Query 008604
Match_columns 560
No_of_seqs 480 out of 4272
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 14:15:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008604.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008604hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02441 fa_ox_alpha_mit fatt 100.0 7E-106 1E-110 897.4 60.7 540 1-550 174-737 (737)
2 TIGR02437 FadB fatty oxidation 100.0 6E-104 1E-108 879.8 61.2 537 1-550 166-714 (714)
3 TIGR02440 FadJ fatty oxidation 100.0 1E-101 3E-106 861.6 59.4 533 1-550 162-699 (699)
4 PRK11730 fadB multifunctional 100.0 2E-101 4E-106 862.1 60.7 537 1-550 166-714 (715)
5 PRK11154 fadJ multifunctional 100.0 5E-101 1E-105 859.3 58.9 533 1-550 167-706 (708)
6 TIGR02279 PaaC-3OHAcCoADH 3-hy 100.0 1.4E-79 3.1E-84 658.5 45.5 402 146-551 4-503 (503)
7 PRK08268 3-hydroxy-acyl-CoA de 100.0 5.3E-78 1.1E-82 648.5 46.4 403 145-551 5-504 (507)
8 COG1250 FadB 3-hydroxyacyl-CoA 100.0 3.7E-70 8E-75 541.6 31.3 280 146-425 2-285 (307)
9 KOG2304 3-hydroxyacyl-CoA dehy 100.0 2.7E-69 5.8E-74 493.7 19.4 280 145-424 9-298 (298)
10 KOG1683 Hydroxyacyl-CoA dehydr 100.0 1.1E-66 2.4E-71 512.3 17.7 378 158-551 1-380 (380)
11 PRK07819 3-hydroxybutyryl-CoA 100.0 2.9E-63 6.2E-68 499.5 31.7 278 146-423 4-286 (286)
12 PRK08293 3-hydroxybutyryl-CoA 100.0 1.9E-58 4.2E-63 466.7 31.8 279 146-424 2-287 (287)
13 PRK09260 3-hydroxybutyryl-CoA 100.0 6.5E-58 1.4E-62 463.3 32.9 281 147-427 1-284 (288)
14 PRK06035 3-hydroxyacyl-CoA deh 100.0 2.9E-57 6.3E-62 459.2 32.2 278 146-423 2-290 (291)
15 PRK05808 3-hydroxybutyryl-CoA 100.0 3.2E-57 6.8E-62 457.1 31.4 277 147-423 3-282 (282)
16 PLN02545 3-hydroxybutyryl-CoA 100.0 1.3E-56 2.8E-61 455.5 33.1 282 146-427 3-287 (295)
17 PRK07530 3-hydroxybutyryl-CoA 100.0 2.9E-56 6.2E-61 452.4 32.7 281 146-426 3-286 (292)
18 PRK08269 3-hydroxybutyryl-CoA 100.0 5.5E-56 1.2E-60 450.9 31.1 268 158-425 1-284 (314)
19 PRK07066 3-hydroxybutyryl-CoA 100.0 4.6E-56 9.9E-61 449.4 25.1 277 145-425 5-298 (321)
20 PRK06130 3-hydroxybutyryl-CoA 100.0 4.3E-47 9.3E-52 388.9 30.9 277 146-427 3-286 (311)
21 PRK06129 3-hydroxyacyl-CoA deh 100.0 1.1E-40 2.4E-45 340.3 29.7 263 147-409 2-275 (308)
22 PF02737 3HCDH_N: 3-hydroxyacy 100.0 6.1E-41 1.3E-45 314.3 20.7 180 149-328 1-180 (180)
23 PRK07531 bifunctional 3-hydrox 100.0 3.7E-37 8.1E-42 332.6 26.7 244 146-393 3-254 (495)
24 KOG2305 3-hydroxyacyl-CoA dehy 100.0 8E-35 1.7E-39 267.2 15.3 229 147-378 3-242 (313)
25 PRK08268 3-hydroxy-acyl-CoA de 100.0 1.5E-28 3.1E-33 265.3 17.5 165 251-422 337-504 (507)
26 PF00725 3HCDH: 3-hydroxyacyl- 99.9 1.5E-25 3.2E-30 189.0 9.0 94 330-423 1-97 (97)
27 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.9 1.1E-22 2.3E-27 219.1 16.0 118 293-410 378-498 (503)
28 PF00725 3HCDH: 3-hydroxyacyl- 99.8 1.1E-19 2.3E-24 153.2 8.6 88 461-552 2-97 (97)
29 COG2084 MmsB 3-hydroxyisobutyr 99.7 4.2E-17 9.1E-22 161.2 17.2 188 148-365 1-211 (286)
30 KOG2304 3-hydroxyacyl-CoA dehy 99.7 6.7E-18 1.4E-22 156.0 9.8 91 459-553 199-298 (298)
31 TIGR01505 tartro_sem_red 2-hyd 99.7 1.2E-16 2.6E-21 162.2 15.9 187 149-365 1-209 (291)
32 PRK09260 3-hydroxybutyryl-CoA 99.7 5.4E-17 1.2E-21 164.4 11.2 93 460-556 185-284 (288)
33 PRK05808 3-hydroxybutyryl-CoA 99.7 1.4E-16 3E-21 161.0 11.5 91 458-552 184-282 (282)
34 PRK11559 garR tartronate semia 99.7 1.1E-15 2.4E-20 155.5 17.6 188 147-365 2-212 (296)
35 PRK07819 3-hydroxybutyryl-CoA 99.7 1.7E-16 3.7E-21 160.1 11.2 89 460-552 190-286 (286)
36 PRK07417 arogenate dehydrogena 99.7 9.4E-15 2E-19 147.3 22.2 154 148-326 1-166 (279)
37 PLN02545 3-hydroxybutyryl-CoA 99.7 3.4E-16 7.5E-21 159.1 11.5 95 459-557 186-288 (295)
38 PRK07530 3-hydroxybutyryl-CoA 99.6 1.2E-15 2.7E-20 154.8 11.0 92 460-555 187-286 (292)
39 COG1250 FadB 3-hydroxyacyl-CoA 99.6 2E-15 4.4E-20 150.7 10.2 92 459-554 185-285 (307)
40 PRK08293 3-hydroxybutyryl-CoA 99.6 3.6E-15 7.8E-20 151.0 11.3 90 460-553 189-287 (287)
41 PRK06035 3-hydroxyacyl-CoA deh 99.6 2.9E-15 6.4E-20 152.0 10.4 89 460-552 189-290 (291)
42 KOG0409 Predicted dehydrogenas 99.6 5.8E-14 1.3E-18 136.2 17.4 188 146-362 34-242 (327)
43 PRK08269 3-hydroxybutyryl-CoA 99.6 1E-14 2.3E-19 148.7 11.4 95 460-555 183-285 (314)
44 PRK11199 tyrA bifunctional cho 99.6 2.9E-13 6.4E-18 141.6 21.1 171 146-357 97-277 (374)
45 PRK06130 3-hydroxybutyryl-CoA 99.5 4.2E-14 9.1E-19 145.0 11.1 96 460-556 184-286 (311)
46 PRK15461 NADH-dependent gamma- 99.5 3.5E-13 7.6E-18 136.9 17.6 183 148-362 2-207 (296)
47 PLN02688 pyrroline-5-carboxyla 99.5 1.4E-12 3.1E-17 130.6 19.9 186 148-362 1-202 (266)
48 TIGR01692 HIBADH 3-hydroxyisob 99.5 6.2E-13 1.4E-17 134.7 15.8 182 152-365 1-206 (288)
49 TIGR02441 fa_ox_alpha_mit fatt 99.5 1E-13 2.2E-18 156.3 10.1 105 310-421 626-737 (737)
50 TIGR02440 FadJ fatty oxidation 99.5 1.4E-13 2.9E-18 154.9 11.1 91 459-555 487-584 (699)
51 PRK15059 tartronate semialdehy 99.5 9E-13 1.9E-17 133.4 15.9 182 149-362 2-205 (292)
52 PRK11154 fadJ multifunctional 99.5 1.8E-13 3.8E-18 154.3 11.1 89 460-554 493-588 (708)
53 PF03446 NAD_binding_2: NAD bi 99.5 3.3E-13 7.1E-18 124.9 10.6 147 147-325 1-160 (163)
54 PLN02350 phosphogluconate dehy 99.4 2.7E-12 5.8E-17 137.3 17.9 190 146-362 5-225 (493)
55 PRK08507 prephenate dehydrogen 99.4 1.6E-11 3.5E-16 123.6 21.3 152 149-327 2-168 (275)
56 cd05297 GH4_alpha_glucosidase_ 99.4 3.9E-14 8.5E-19 150.4 2.1 160 149-322 2-185 (423)
57 PRK11880 pyrroline-5-carboxyla 99.4 1.8E-11 3.8E-16 122.8 20.8 188 147-362 2-203 (267)
58 PRK06545 prephenate dehydrogen 99.4 4.2E-12 9.1E-17 132.5 15.9 221 148-392 1-249 (359)
59 PRK11730 fadB multifunctional 99.4 1.1E-12 2.4E-17 147.9 10.5 92 459-555 495-595 (715)
60 PTZ00142 6-phosphogluconate de 99.4 1E-11 2.3E-16 132.7 17.2 189 148-363 2-220 (470)
61 PRK08655 prephenate dehydrogen 99.4 2.4E-11 5.1E-16 129.7 19.3 154 148-326 1-162 (437)
62 TIGR02437 FadB fatty oxidation 99.4 1.8E-12 3.8E-17 146.0 10.2 91 460-555 496-595 (714)
63 PRK07679 pyrroline-5-carboxyla 99.4 2.7E-11 5.8E-16 122.2 17.8 189 147-362 3-207 (279)
64 PRK11064 wecC UDP-N-acetyl-D-m 99.4 3.4E-11 7.4E-16 127.8 19.1 198 147-362 3-248 (415)
65 PLN02858 fructose-bisphosphate 99.4 1.7E-11 3.6E-16 146.1 18.4 187 147-365 4-217 (1378)
66 COG0287 TyrA Prephenate dehydr 99.3 1.3E-11 2.9E-16 122.9 14.7 158 147-326 3-170 (279)
67 PRK12491 pyrroline-5-carboxyla 99.3 6.2E-11 1.3E-15 118.7 19.6 189 148-362 3-205 (272)
68 TIGR00872 gnd_rel 6-phosphoglu 99.3 4.7E-11 1E-15 121.5 19.1 188 149-362 2-209 (298)
69 TIGR03026 NDP-sugDHase nucleot 99.3 1.9E-11 4E-16 130.1 16.6 201 148-362 1-244 (411)
70 PRK09599 6-phosphogluconate de 99.3 4.6E-11 1E-15 121.8 18.1 182 149-362 2-211 (301)
71 PRK07502 cyclohexadienyl dehyd 99.3 4.3E-11 9.3E-16 122.5 17.2 156 146-326 5-178 (307)
72 PRK12478 enoyl-CoA hydratase; 99.3 3.6E-12 7.7E-17 129.3 8.4 98 1-134 173-279 (298)
73 PLN02600 enoyl-CoA hydratase 99.3 5.3E-12 1.2E-16 125.1 9.5 97 1-133 152-248 (251)
74 PRK08150 enoyl-CoA hydratase; 99.3 5.9E-12 1.3E-16 125.1 9.6 97 1-133 156-252 (255)
75 PRK05862 enoyl-CoA hydratase; 99.3 5.4E-12 1.2E-16 125.6 9.3 97 1-133 158-254 (257)
76 PRK12490 6-phosphogluconate de 99.3 7.9E-11 1.7E-15 119.9 17.9 181 149-362 2-210 (299)
77 PLN02858 fructose-bisphosphate 99.3 3.4E-11 7.3E-16 143.5 17.2 191 145-365 322-537 (1378)
78 PLN02888 enoyl-CoA hydratase 99.3 7.2E-12 1.6E-16 125.1 9.7 99 1-135 163-263 (265)
79 PRK15057 UDP-glucose 6-dehydro 99.3 2.3E-11 4.9E-16 127.6 13.6 193 149-362 2-233 (388)
80 TIGR02280 PaaB1 phenylacetate 99.3 8.4E-12 1.8E-16 124.2 9.4 97 1-133 157-253 (256)
81 PRK07658 enoyl-CoA hydratase; 99.3 9.7E-12 2.1E-16 123.9 9.8 97 1-133 158-254 (257)
82 PRK05980 enoyl-CoA hydratase; 99.3 8.2E-12 1.8E-16 124.6 9.0 96 1-132 164-259 (260)
83 PRK08138 enoyl-CoA hydratase; 99.3 1.1E-11 2.5E-16 123.6 10.0 97 1-133 162-258 (261)
84 PRK08258 enoyl-CoA hydratase; 99.3 9.4E-12 2E-16 125.2 9.3 97 1-133 178-274 (277)
85 KOG1680 Enoyl-CoA hydratase [L 99.3 6.6E-12 1.4E-16 120.4 7.5 97 1-133 191-287 (290)
86 PRK08139 enoyl-CoA hydratase; 99.3 1E-11 2.2E-16 124.2 9.2 97 1-133 167-263 (266)
87 PRK07938 enoyl-CoA hydratase; 99.3 7.6E-12 1.6E-16 123.9 8.0 95 1-131 155-249 (249)
88 PRK12557 H(2)-dependent methyl 99.3 3.8E-10 8.2E-15 116.2 20.3 205 159-386 32-260 (342)
89 PRK07799 enoyl-CoA hydratase; 99.3 1.5E-11 3.3E-16 122.8 9.6 97 1-133 164-260 (263)
90 PRK08140 enoyl-CoA hydratase; 99.3 1.6E-11 3.4E-16 122.7 9.5 97 1-133 163-259 (262)
91 PRK09076 enoyl-CoA hydratase; 99.3 1.8E-11 3.9E-16 121.9 9.8 97 1-133 159-255 (258)
92 PRK06495 enoyl-CoA hydratase; 99.3 1.7E-11 3.6E-16 122.1 9.4 97 1-133 158-254 (257)
93 PRK05809 3-hydroxybutyryl-CoA 99.3 1.7E-11 3.8E-16 122.2 9.4 97 1-133 161-257 (260)
94 PRK06127 enoyl-CoA hydratase; 99.3 1.8E-11 4E-16 122.6 9.5 97 1-133 170-266 (269)
95 PLN02256 arogenate dehydrogena 99.2 1.8E-10 3.9E-15 116.9 16.6 153 147-326 36-203 (304)
96 PRK08252 enoyl-CoA hydratase; 99.2 2.1E-11 4.5E-16 121.2 9.5 97 1-133 155-251 (254)
97 PRK06143 enoyl-CoA hydratase; 99.2 1.8E-11 3.8E-16 121.7 8.8 94 1-130 163-256 (256)
98 PRK09674 enoyl-CoA hydratase-i 99.2 2.4E-11 5.2E-16 120.8 9.7 97 1-133 156-252 (255)
99 PRK06563 enoyl-CoA hydratase; 99.2 2.1E-11 4.4E-16 121.3 9.2 97 1-133 156-252 (255)
100 TIGR00873 gnd 6-phosphoglucona 99.2 1.3E-10 2.9E-15 124.3 15.9 188 149-364 1-218 (467)
101 PRK05981 enoyl-CoA hydratase; 99.2 2.7E-11 5.8E-16 121.3 9.5 97 1-133 167-263 (266)
102 PRK07468 enoyl-CoA hydratase; 99.2 2.6E-11 5.5E-16 121.1 9.3 97 1-133 163-259 (262)
103 PRK07657 enoyl-CoA hydratase; 99.2 3.1E-11 6.6E-16 120.4 9.6 97 1-133 161-257 (260)
104 PRK09245 enoyl-CoA hydratase; 99.2 3E-11 6.5E-16 121.0 9.5 97 1-133 167-263 (266)
105 PRK05995 enoyl-CoA hydratase; 99.2 2.9E-11 6.3E-16 120.8 9.3 97 1-133 162-259 (262)
106 PLN02664 enoyl-CoA hydratase/d 99.2 3E-11 6.5E-16 121.4 9.5 97 1-133 175-272 (275)
107 PRK06494 enoyl-CoA hydratase; 99.2 2.8E-11 6.1E-16 120.6 9.0 97 1-133 158-256 (259)
108 PRK06142 enoyl-CoA hydratase; 99.2 3E-11 6.5E-16 121.3 9.0 97 1-133 173-270 (272)
109 PLN03214 probable enoyl-CoA hy 99.2 2.3E-11 5E-16 122.2 8.1 98 1-134 172-269 (278)
110 PRK07511 enoyl-CoA hydratase; 99.2 4.3E-11 9.3E-16 119.4 9.0 96 1-132 162-257 (260)
111 PRK06210 enoyl-CoA hydratase; 99.2 4.3E-11 9.4E-16 120.2 9.1 98 1-133 172-269 (272)
112 PRK08184 benzoyl-CoA-dihydrodi 99.2 2.3E-11 5E-16 132.1 7.0 97 2-134 446-546 (550)
113 PRK00094 gpsA NAD(P)H-dependen 99.2 7.1E-10 1.5E-14 114.4 17.8 165 147-330 1-182 (325)
114 PRK03580 carnitinyl-CoA dehydr 99.2 4.9E-11 1.1E-15 119.0 8.8 97 1-133 158-258 (261)
115 PRK06688 enoyl-CoA hydratase; 99.2 5.8E-11 1.3E-15 118.4 9.3 97 1-133 160-256 (259)
116 TIGR03222 benzo_boxC benzoyl-C 99.2 2.7E-11 5.8E-16 131.1 6.8 97 1-133 441-541 (546)
117 PTZ00082 L-lactate dehydrogena 99.2 6.3E-11 1.4E-15 121.3 9.1 126 147-284 6-153 (321)
118 PRK08259 enoyl-CoA hydratase; 99.2 6.5E-11 1.4E-15 117.5 8.7 93 1-130 157-249 (254)
119 PRK07659 enoyl-CoA hydratase; 99.2 6.1E-11 1.3E-15 118.3 8.5 96 1-133 162-257 (260)
120 PRK05674 gamma-carboxygeranoyl 99.2 7.7E-11 1.7E-15 117.8 8.7 97 1-133 164-261 (265)
121 PRK08818 prephenate dehydrogen 99.2 3.5E-10 7.5E-15 117.1 13.6 137 148-326 5-154 (370)
122 PRK07260 enoyl-CoA hydratase; 99.2 9.6E-11 2.1E-15 116.5 8.9 94 1-130 162-255 (255)
123 TIGR01929 menB naphthoate synt 99.1 6.7E-11 1.4E-15 117.8 7.7 96 1-133 161-256 (259)
124 cd01339 LDH-like_MDH L-lactate 99.1 7.8E-11 1.7E-15 120.0 8.3 122 150-283 1-139 (300)
125 PRK07396 dihydroxynaphthoic ac 99.1 1.1E-10 2.4E-15 117.2 8.8 96 1-133 171-266 (273)
126 PRK11423 methylmalonyl-CoA dec 99.1 1.1E-10 2.4E-15 116.3 8.8 97 1-133 160-258 (261)
127 PRK15182 Vi polysaccharide bio 99.1 1.7E-09 3.7E-14 114.9 18.1 195 148-362 7-244 (425)
128 PRK05864 enoyl-CoA hydratase; 99.1 1.4E-10 3E-15 116.7 9.2 97 1-133 174-272 (276)
129 PRK09120 p-hydroxycinnamoyl Co 99.1 1.4E-10 3.1E-15 116.4 9.0 94 1-130 168-264 (275)
130 PRK14806 bifunctional cyclohex 99.1 5.8E-09 1.3E-13 119.4 23.1 156 147-326 3-176 (735)
131 PRK05479 ketol-acid reductoiso 99.1 2E-09 4.4E-14 109.4 16.5 150 148-323 18-177 (330)
132 PLN02921 naphthoate synthase 99.1 1.8E-10 3.8E-15 118.0 8.8 96 1-133 225-320 (327)
133 PRK07680 late competence prote 99.1 4.6E-09 1E-13 105.6 18.5 151 149-326 2-158 (273)
134 TIGR03210 badI 2-ketocyclohexa 99.1 2.1E-10 4.7E-15 114.0 8.4 96 1-133 158-253 (256)
135 PRK08321 naphthoate synthase; 99.1 2.5E-10 5.4E-15 116.2 8.4 96 1-133 200-295 (302)
136 PTZ00117 malate dehydrogenase; 99.1 2.2E-10 4.9E-15 117.3 7.6 125 148-284 6-147 (319)
137 PRK06144 enoyl-CoA hydratase; 99.1 3.4E-10 7.3E-15 113.0 8.6 93 1-133 167-259 (262)
138 PRK06223 malate dehydrogenase; 99.1 4.4E-10 9.6E-15 115.0 9.4 125 147-283 2-143 (307)
139 PRK06476 pyrroline-5-carboxyla 99.0 9.8E-09 2.1E-13 102.4 18.3 181 149-362 2-194 (258)
140 PRK06928 pyrroline-5-carboxyla 99.0 3.3E-09 7.2E-14 106.8 14.8 153 147-324 1-160 (277)
141 PRK06023 enoyl-CoA hydratase; 99.0 4.6E-10 1E-14 111.3 8.0 91 1-128 161-251 (251)
142 COG1004 Ugd Predicted UDP-gluc 99.0 9.7E-09 2.1E-13 104.4 17.4 202 148-361 1-241 (414)
143 PRK08260 enoyl-CoA hydratase; 99.0 7.2E-10 1.6E-14 112.6 9.3 100 1-135 177-277 (296)
144 COG0677 WecC UDP-N-acetyl-D-ma 99.0 2.3E-08 4.9E-13 101.3 19.5 199 148-362 10-251 (436)
145 PRK07509 enoyl-CoA hydratase; 99.0 7E-10 1.5E-14 110.8 8.8 94 1-132 166-259 (262)
146 PRK06072 enoyl-CoA hydratase; 99.0 8.7E-10 1.9E-14 109.1 9.3 94 1-133 152-245 (248)
147 COG0345 ProC Pyrroline-5-carbo 99.0 5.4E-09 1.2E-13 102.9 14.5 150 148-324 2-157 (266)
148 TIGR03189 dienoyl_CoA_hyt cycl 99.0 1.1E-09 2.4E-14 108.5 9.7 95 1-133 152-248 (251)
149 PRK05870 enoyl-CoA hydratase; 99.0 4.9E-10 1.1E-14 111.0 7.0 90 1-128 159-249 (249)
150 PF00378 ECH: Enoyl-CoA hydrat 99.0 4.3E-10 9.3E-15 111.3 6.5 92 1-128 154-245 (245)
151 PRK14618 NAD(P)H-dependent gly 99.0 4.3E-09 9.3E-14 108.8 14.1 161 147-328 4-179 (328)
152 PRK07327 enoyl-CoA hydratase; 99.0 1E-09 2.2E-14 109.9 8.6 93 1-133 170-265 (268)
153 TIGR00465 ilvC ketol-acid redu 99.0 6.4E-09 1.4E-13 105.9 13.9 202 148-380 4-231 (314)
154 PRK14619 NAD(P)H-dependent gly 99.0 1.1E-08 2.3E-13 104.8 15.5 139 148-330 5-158 (308)
155 TIGR01915 npdG NADPH-dependent 99.0 2.6E-08 5.5E-13 96.8 17.2 163 148-327 1-189 (219)
156 PRK07112 polyketide biosynthes 99.0 1.4E-09 3.1E-14 108.1 8.6 94 1-133 159-252 (255)
157 PRK05617 3-hydroxyisobutyryl-C 99.0 8.2E-10 1.8E-14 114.1 6.7 132 1-133 163-323 (342)
158 PRK07827 enoyl-CoA hydratase; 99.0 1.7E-09 3.7E-14 107.9 8.7 94 1-132 164-257 (260)
159 PRK07634 pyrroline-5-carboxyla 99.0 3.5E-08 7.6E-13 97.5 18.1 152 147-324 4-162 (245)
160 PLN02712 arogenate dehydrogena 99.0 8.4E-09 1.8E-13 115.2 15.1 154 146-326 368-536 (667)
161 TIGR01724 hmd_rel H2-forming N 99.0 8.7E-08 1.9E-12 95.4 20.3 147 159-326 32-193 (341)
162 PRK07854 enoyl-CoA hydratase; 98.9 2.3E-09 5E-14 105.7 9.0 91 1-133 150-240 (243)
163 PRK08229 2-dehydropantoate 2-r 98.9 6.9E-09 1.5E-13 107.8 12.9 166 147-329 2-179 (341)
164 PRK07066 3-hydroxybutyryl-CoA 98.9 8.8E-10 1.9E-14 112.3 5.8 85 459-544 187-275 (321)
165 PF02153 PDH: Prephenate dehyd 98.9 3.5E-08 7.6E-13 98.3 15.3 141 162-326 1-157 (258)
166 PRK07110 polyketide biosynthes 98.9 4.2E-09 9E-14 104.4 8.6 90 1-126 158-247 (249)
167 PRK09287 6-phosphogluconate de 98.9 3.2E-08 6.9E-13 105.7 15.5 177 158-362 1-208 (459)
168 PF03721 UDPG_MGDP_dh_N: UDP-g 98.9 1E-08 2.2E-13 96.6 9.2 108 148-268 1-125 (185)
169 PLN02874 3-hydroxyisobutyryl-C 98.8 3.7E-09 8E-14 110.7 6.3 132 1-133 168-336 (379)
170 PTZ00431 pyrroline carboxylate 98.8 4.7E-08 1E-12 97.5 13.9 145 148-324 4-153 (260)
171 PLN02353 probable UDP-glucose 98.8 1.2E-07 2.6E-12 101.8 17.8 204 147-362 1-252 (473)
172 PRK06190 enoyl-CoA hydratase; 98.8 9.2E-09 2E-13 102.3 8.6 95 1-131 158-255 (258)
173 PF01210 NAD_Gly3P_dh_N: NAD-d 98.8 5E-09 1.1E-13 96.2 6.0 105 149-265 1-106 (157)
174 COG2085 Predicted dinucleotide 98.8 1.9E-07 4.1E-12 87.7 16.3 154 147-327 1-180 (211)
175 PLN02712 arogenate dehydrogena 98.8 8.2E-08 1.8E-12 107.4 16.4 153 147-326 52-219 (667)
176 COG0240 GpsA Glycerol-3-phosph 98.8 1.6E-08 3.4E-13 101.5 9.1 166 148-330 2-181 (329)
177 COG1024 CaiD Enoyl-CoA hydrata 98.8 2.4E-08 5.1E-13 99.5 9.3 93 1-131 162-255 (257)
178 PF03807 F420_oxidored: NADP o 98.7 2.2E-08 4.7E-13 83.9 6.9 91 149-263 1-95 (96)
179 COG0447 MenB Dihydroxynaphthoi 98.7 8.9E-09 1.9E-13 95.1 3.5 92 2-133 181-275 (282)
180 TIGR01763 MalateDH_bact malate 98.7 3.5E-08 7.6E-13 100.5 8.2 98 148-258 2-114 (305)
181 PF10727 Rossmann-like: Rossma 98.7 6.8E-08 1.5E-12 84.7 8.6 115 147-285 10-127 (127)
182 cd00650 LDH_MDH_like NAD-depen 98.7 5.6E-08 1.2E-12 97.2 8.5 118 150-283 1-143 (263)
183 COG1023 Gnd Predicted 6-phosph 98.7 1.7E-06 3.6E-11 81.9 17.2 189 148-362 1-210 (300)
184 KOG1679 Enoyl-CoA hydratase [L 98.6 3E-08 6.6E-13 91.4 5.0 97 1-133 188-288 (291)
185 TIGR02354 thiF_fam2 thiamine b 98.6 7.7E-08 1.7E-12 91.8 7.0 104 148-259 22-142 (200)
186 PRK12439 NAD(P)H-dependent gly 98.6 7E-07 1.5E-11 92.6 14.3 166 146-331 6-188 (341)
187 KOG1682 Enoyl-CoA isomerase [L 98.6 9.3E-08 2E-12 87.5 5.6 97 1-133 188-284 (287)
188 PRK08290 enoyl-CoA hydratase; 98.5 1.6E-07 3.5E-12 95.0 6.5 81 1-117 180-262 (288)
189 PRK06444 prephenate dehydrogen 98.5 3.8E-06 8.2E-11 79.6 13.9 114 148-326 1-120 (197)
190 COG0362 Gnd 6-phosphogluconate 98.4 1.3E-05 2.8E-10 81.3 17.8 191 147-365 3-223 (473)
191 PRK06129 3-hydroxyacyl-CoA deh 98.4 1.1E-06 2.4E-11 90.0 10.5 84 460-544 187-274 (308)
192 PRK06213 enoyl-CoA hydratase; 98.4 1.8E-07 3.8E-12 91.6 4.4 73 1-109 156-228 (229)
193 PRK06249 2-dehydropantoate 2-r 98.4 9.9E-06 2.1E-10 83.1 17.2 168 147-330 5-189 (313)
194 PRK08788 enoyl-CoA hydratase; 98.4 8.6E-07 1.9E-11 89.3 9.0 90 1-127 185-275 (287)
195 PRK06522 2-dehydropantoate 2-r 98.4 3.6E-06 7.8E-11 85.9 13.5 113 148-275 1-114 (304)
196 PRK14620 NAD(P)H-dependent gly 98.4 5.8E-06 1.3E-10 85.4 15.0 103 149-265 2-109 (326)
197 TIGR03376 glycerol3P_DH glycer 98.4 3.3E-06 7.2E-11 87.1 12.7 107 149-267 1-121 (342)
198 PRK12480 D-lactate dehydrogena 98.4 1.2E-06 2.7E-11 90.1 9.2 99 148-275 147-249 (330)
199 PLN02157 3-hydroxyisobutyryl-C 98.3 6.4E-07 1.4E-11 94.0 6.4 88 1-126 196-283 (401)
200 PRK12921 2-dehydropantoate 2-r 98.3 4.3E-06 9.3E-11 85.4 11.8 164 148-327 1-177 (305)
201 PRK08272 enoyl-CoA hydratase; 98.3 8.1E-07 1.8E-11 90.6 6.4 42 1-42 188-229 (302)
202 PF00056 Ldh_1_N: lactate/mala 98.3 3.9E-06 8.5E-11 75.5 10.0 98 148-259 1-115 (141)
203 COG4007 Predicted dehydrogenas 98.3 1.8E-05 4E-10 75.5 14.6 146 159-326 33-194 (340)
204 PTZ00345 glycerol-3-phosphate 98.3 4.8E-06 1E-10 86.5 11.3 174 147-330 11-206 (365)
205 PRK13243 glyoxylate reductase; 98.2 5.8E-06 1.3E-10 85.4 10.8 101 148-275 151-255 (333)
206 cd05291 HicDH_like L-2-hydroxy 98.2 3.8E-06 8.2E-11 85.9 8.3 98 148-259 1-114 (306)
207 PRK15076 alpha-galactosidase; 98.2 6.9E-06 1.5E-10 87.5 10.0 76 148-235 2-84 (431)
208 PRK13403 ketol-acid reductoiso 98.2 6.6E-06 1.4E-10 82.8 8.5 87 148-259 17-103 (335)
209 PRK15469 ghrA bifunctional gly 98.1 1.2E-05 2.7E-10 82.0 10.6 112 148-286 137-253 (312)
210 cd05293 LDH_1 A subgroup of L- 98.1 9.2E-06 2E-10 83.0 9.6 98 148-258 4-117 (312)
211 KOG1683 Hydroxyacyl-CoA dehydr 98.1 9.4E-07 2E-11 88.8 1.5 77 329-410 293-375 (380)
212 PRK07574 formate dehydrogenase 98.1 2.8E-05 6.1E-10 81.4 12.2 103 148-275 193-299 (385)
213 PLN03139 formate dehydrogenase 98.1 3.3E-05 7.2E-10 80.8 12.7 129 148-301 200-341 (386)
214 KOG1681 Enoyl-CoA isomerase [L 98.1 7.5E-06 1.6E-10 76.6 6.2 96 1-132 191-287 (292)
215 cd05292 LDH_2 A subgroup of L- 98.1 1.7E-05 3.8E-10 81.0 9.6 97 148-258 1-113 (308)
216 cd01065 NAD_bind_Shikimate_DH 98.0 8.4E-06 1.8E-10 74.4 6.5 106 148-274 20-128 (155)
217 PF07991 IlvN: Acetohydroxy ac 98.0 1.4E-05 3E-10 72.2 7.6 86 148-259 5-92 (165)
218 PRK06436 glycerate dehydrogena 98.0 2.5E-05 5.4E-10 79.4 10.3 123 148-300 123-255 (303)
219 PRK05869 enoyl-CoA hydratase; 98.0 4.9E-06 1.1E-10 80.9 4.7 42 1-42 163-204 (222)
220 PLN02602 lactate dehydrogenase 98.0 1.4E-05 3E-10 82.7 8.2 95 148-257 38-150 (350)
221 cd00300 LDH_like L-lactate deh 98.0 1.8E-05 3.9E-10 80.6 8.3 96 150-259 1-112 (300)
222 PRK00066 ldh L-lactate dehydro 98.0 1.8E-05 4E-10 80.9 8.4 95 148-256 7-117 (315)
223 PRK08605 D-lactate dehydrogena 97.9 2.3E-05 5.1E-10 80.9 7.4 99 148-274 147-250 (332)
224 PLN02928 oxidoreductase family 97.9 6.9E-05 1.5E-09 77.8 10.9 125 148-286 160-289 (347)
225 TIGR01327 PGDH D-3-phosphoglyc 97.9 7.5E-05 1.6E-09 81.9 11.7 129 148-302 139-279 (525)
226 PLN02988 3-hydroxyisobutyryl-C 97.9 5.4E-05 1.2E-09 79.2 10.0 125 1-127 168-328 (381)
227 TIGR00112 proC pyrroline-5-car 97.9 0.0004 8.7E-09 68.6 15.5 167 170-362 9-185 (245)
228 COG0111 SerA Phosphoglycerate 97.9 8E-05 1.7E-09 76.3 10.8 112 148-286 143-260 (324)
229 KOG0016 Enoyl-CoA hydratase/is 97.9 2.7E-05 5.9E-10 74.7 6.6 93 1-129 171-263 (266)
230 PF02826 2-Hacid_dh_C: D-isome 97.9 1.2E-05 2.5E-10 75.5 4.1 113 148-286 37-154 (178)
231 PRK05225 ketol-acid reductoiso 97.9 0.0033 7.1E-08 66.1 22.4 147 148-321 37-200 (487)
232 COG1893 ApbA Ketopantoate redu 97.9 0.00017 3.8E-09 73.5 12.8 124 148-285 1-125 (307)
233 TIGR02853 spore_dpaA dipicolin 97.8 0.00011 2.3E-09 74.3 10.6 89 148-264 152-241 (287)
234 cd05294 LDH-like_MDH_nadp A la 97.8 5.4E-05 1.2E-09 77.4 8.6 123 148-283 1-145 (309)
235 COG0039 Mdh Malate/lactate deh 97.8 4.5E-05 9.7E-10 76.9 7.6 98 148-258 1-114 (313)
236 PRK05708 2-dehydropantoate 2-r 97.8 0.0001 2.2E-09 75.3 10.0 114 148-275 3-118 (305)
237 cd05290 LDH_3 A subgroup of L- 97.8 4.6E-05 9.9E-10 77.7 7.4 93 149-258 1-115 (307)
238 cd01487 E1_ThiF_like E1_ThiF_l 97.8 5.4E-05 1.2E-09 70.7 7.1 95 149-251 1-112 (174)
239 PRK13581 D-3-phosphoglycerate 97.8 0.00013 2.8E-09 80.1 11.1 128 148-302 141-280 (526)
240 PF00670 AdoHcyase_NAD: S-aden 97.8 9.5E-05 2.1E-09 67.2 7.8 97 148-272 24-123 (162)
241 PF02558 ApbA: Ketopantoate re 97.7 0.00024 5.2E-09 64.5 9.6 111 150-277 1-117 (151)
242 PRK05442 malate dehydrogenase; 97.7 9.3E-05 2E-09 76.0 7.1 102 147-262 4-130 (326)
243 PLN00112 malate dehydrogenase 97.6 0.00033 7.2E-09 74.3 10.9 102 147-262 100-226 (444)
244 PLN02267 enoyl-CoA hydratase/i 97.6 6.2E-05 1.3E-09 74.1 4.9 42 1-42 160-202 (239)
245 PRK08410 2-hydroxyacid dehydro 97.6 0.00035 7.5E-09 71.5 10.4 108 148-286 146-258 (311)
246 TIGR01759 MalateDH-SF1 malate 97.6 0.00016 3.5E-09 74.1 7.7 101 147-262 3-129 (323)
247 PRK14194 bifunctional 5,10-met 97.6 9.3E-05 2E-09 74.3 5.5 69 148-260 160-229 (301)
248 PRK15409 bifunctional glyoxyla 97.6 0.00062 1.3E-08 70.0 11.6 101 148-275 146-251 (323)
249 PRK00257 erythronate-4-phospha 97.6 7.1E-05 1.5E-09 78.2 4.8 109 148-286 117-234 (381)
250 cd01338 MDH_choloroplast_like 97.6 9.6E-05 2.1E-09 75.8 5.4 106 148-270 3-134 (322)
251 TIGR01772 MDH_euk_gproteo mala 97.5 0.00018 3.9E-09 73.4 6.7 92 149-259 1-113 (312)
252 PF01488 Shikimate_DH: Shikima 97.5 0.00019 4E-09 64.1 6.1 73 147-237 12-86 (135)
253 PRK11790 D-3-phosphoglycerate 97.5 0.00014 3.1E-09 77.1 6.2 99 148-275 152-254 (409)
254 TIGR01757 Malate-DH_plant mala 97.5 0.00066 1.4E-08 70.9 10.9 102 147-262 44-170 (387)
255 PRK08644 thiamine biosynthesis 97.5 0.00024 5.1E-09 68.5 6.8 104 148-259 29-149 (212)
256 KOG1200 Mitochondrial/plastidi 97.5 0.00014 3.1E-09 67.0 4.6 194 147-361 13-232 (256)
257 PRK08306 dipicolinate synthase 97.4 0.00045 9.7E-09 70.2 8.7 88 148-262 153-241 (296)
258 PLN02851 3-hydroxyisobutyryl-C 97.4 0.00054 1.2E-08 72.1 9.4 124 1-128 201-362 (407)
259 PRK06487 glycerate dehydrogena 97.4 0.00073 1.6E-08 69.3 10.2 107 148-286 149-260 (317)
260 PRK07531 bifunctional 3-hydrox 97.4 0.00042 9.2E-09 75.6 8.6 69 459-528 184-253 (495)
261 PRK06932 glycerate dehydrogena 97.4 0.00075 1.6E-08 69.2 9.8 108 148-286 148-260 (314)
262 PRK15438 erythronate-4-phospha 97.4 0.00016 3.5E-09 75.4 4.8 109 148-286 117-234 (378)
263 cd01337 MDH_glyoxysomal_mitoch 97.4 0.00064 1.4E-08 69.2 9.0 92 148-259 1-114 (310)
264 KOG2380 Prephenate dehydrogena 97.4 0.0033 7.1E-08 62.9 13.4 153 147-326 52-219 (480)
265 PF02056 Glyco_hydro_4: Family 97.4 0.00096 2.1E-08 62.3 9.1 74 149-234 1-81 (183)
266 PLN00106 malate dehydrogenase 97.3 0.00052 1.1E-08 70.3 7.6 92 148-257 19-131 (323)
267 cd00401 AdoHcyase S-adenosyl-L 97.3 0.0011 2.3E-08 70.0 9.9 83 148-259 203-286 (413)
268 COG1748 LYS9 Saccharopine dehy 97.3 0.00032 6.9E-09 72.9 5.8 81 147-240 1-82 (389)
269 PRK13304 L-aspartate dehydroge 97.3 0.0011 2.4E-08 66.3 9.4 67 148-237 2-72 (265)
270 PRK06141 ornithine cyclodeamin 97.3 0.00074 1.6E-08 69.3 8.2 89 147-259 125-216 (314)
271 cd05197 GH4_glycoside_hydrolas 97.3 0.0018 4E-08 68.9 11.2 75 148-234 1-82 (425)
272 COG4221 Short-chain alcohol de 97.3 0.0024 5.3E-08 61.6 10.8 81 149-234 7-89 (246)
273 cd01075 NAD_bind_Leu_Phe_Val_D 97.3 0.00086 1.9E-08 64.1 7.8 39 148-186 29-67 (200)
274 TIGR01758 MDH_euk_cyt malate d 97.3 0.00065 1.4E-08 69.8 7.4 105 149-270 1-131 (324)
275 PLN02306 hydroxypyruvate reduc 97.3 0.00062 1.3E-08 71.5 7.3 116 148-275 166-287 (386)
276 COG1052 LdhA Lactate dehydroge 97.3 0.00052 1.1E-08 70.3 6.6 101 148-275 147-251 (324)
277 PTZ00325 malate dehydrogenase; 97.2 0.00085 1.8E-08 68.7 7.9 94 146-258 7-121 (321)
278 cd00704 MDH Malate dehydrogena 97.2 0.00031 6.7E-09 72.1 4.6 105 149-270 2-132 (323)
279 cd05298 GH4_GlvA_pagL_like Gly 97.2 0.0026 5.7E-08 67.9 11.7 75 148-234 1-82 (437)
280 PRK13302 putative L-aspartate 97.2 0.0019 4.2E-08 64.7 10.1 70 147-238 6-79 (271)
281 TIGR01771 L-LDH-NAD L-lactate 97.2 0.00048 1E-08 70.0 5.8 94 152-259 1-110 (299)
282 KOG2711 Glycerol-3-phosphate d 97.2 0.00091 2E-08 67.0 7.4 117 145-266 19-143 (372)
283 KOG2653 6-phosphogluconate deh 97.2 0.012 2.6E-07 59.3 14.9 195 146-364 5-226 (487)
284 PRK14188 bifunctional 5,10-met 97.1 0.00065 1.4E-08 68.4 5.5 68 148-260 159-228 (296)
285 cd05296 GH4_P_beta_glucosidase 97.1 0.003 6.5E-08 67.2 10.8 75 148-234 1-83 (419)
286 TIGR03200 dearomat_oah 6-oxocy 97.1 0.00085 1.8E-08 68.9 6.4 42 1-42 188-241 (360)
287 TIGR00936 ahcY adenosylhomocys 97.1 0.0017 3.8E-08 68.3 8.6 95 148-272 196-295 (406)
288 PRK12549 shikimate 5-dehydroge 97.1 0.0015 3.2E-08 66.0 7.7 41 148-188 128-169 (284)
289 TIGR03222 benzo_boxC benzoyl-C 97.0 0.00038 8.1E-09 76.1 3.2 42 1-42 188-229 (546)
290 PRK05476 S-adenosyl-L-homocyst 97.0 0.0017 3.7E-08 68.7 7.8 86 148-264 213-300 (425)
291 PLN02494 adenosylhomocysteinas 97.0 0.0049 1.1E-07 65.6 11.2 87 148-264 255-342 (477)
292 PTZ00075 Adenosylhomocysteinas 97.0 0.0021 4.5E-08 68.5 8.1 89 148-267 255-345 (476)
293 cd01336 MDH_cytoplasmic_cytoso 97.0 0.0016 3.5E-08 67.0 7.1 100 148-262 3-128 (325)
294 PRK04148 hypothetical protein; 97.0 0.0018 3.9E-08 57.2 6.1 92 148-260 18-109 (134)
295 TIGR00507 aroE shikimate 5-deh 97.0 0.002 4.4E-08 64.6 7.3 40 148-187 118-157 (270)
296 COG0569 TrkA K+ transport syst 96.9 0.0076 1.6E-07 58.7 11.0 93 148-260 1-99 (225)
297 PRK08184 benzoyl-CoA-dihydrodi 96.9 0.00052 1.1E-08 75.2 3.0 43 1-43 192-234 (550)
298 cd05213 NAD_bind_Glutamyl_tRNA 96.9 0.0019 4.1E-08 66.2 6.7 72 147-239 178-251 (311)
299 KOG3124 Pyrroline-5-carboxylat 96.9 0.0073 1.6E-07 58.5 10.1 150 148-321 1-155 (267)
300 TIGR02371 ala_DH_arch alanine 96.9 0.0034 7.3E-08 64.7 8.4 90 147-260 128-220 (325)
301 PRK14179 bifunctional 5,10-met 96.9 0.0014 3E-08 65.5 5.2 68 148-260 159-228 (284)
302 KOG2666 UDP-glucose/GDP-mannos 96.8 0.018 3.9E-07 57.1 12.0 203 147-361 1-251 (481)
303 KOG0069 Glyoxylate/hydroxypyru 96.8 0.0038 8.2E-08 63.6 7.5 102 147-274 162-267 (336)
304 PRK05086 malate dehydrogenase; 96.8 0.0028 6.1E-08 64.9 6.7 94 148-259 1-115 (312)
305 PRK09186 flagellin modificatio 96.7 0.024 5.3E-07 55.8 12.8 82 148-234 5-91 (256)
306 cd01078 NAD_bind_H4MPT_DH NADP 96.7 0.0031 6.7E-08 59.9 6.1 40 148-187 29-69 (194)
307 COG2910 Putative NADH-flavin r 96.7 0.0026 5.7E-08 58.4 5.2 70 148-235 1-71 (211)
308 COG4091 Predicted homoserine d 96.7 0.024 5.3E-07 57.1 12.0 158 147-326 17-184 (438)
309 PRK00258 aroE shikimate 5-dehy 96.6 0.0048 1E-07 62.2 7.3 71 148-237 124-196 (278)
310 KOG1495 Lactate dehydrogenase 96.6 0.0054 1.2E-07 59.6 7.1 99 147-259 20-134 (332)
311 TIGR00518 alaDH alanine dehydr 96.6 0.0033 7.2E-08 65.9 6.2 40 147-186 167-206 (370)
312 TIGR01470 cysG_Nterm siroheme 96.6 0.013 2.7E-07 56.3 9.6 130 148-317 10-142 (205)
313 PRK07340 ornithine cyclodeamin 96.6 0.0062 1.3E-07 62.2 7.9 88 147-260 125-215 (304)
314 COG0300 DltE Short-chain dehyd 96.6 0.0045 9.8E-08 61.2 6.5 84 146-234 5-92 (265)
315 cd01080 NAD_bind_m-THF_DH_Cycl 96.6 0.0035 7.7E-08 58.0 5.3 34 148-181 45-79 (168)
316 TIGR01809 Shik-DH-AROM shikima 96.6 0.0056 1.2E-07 61.8 7.2 40 148-187 126-166 (282)
317 COG1712 Predicted dinucleotide 96.6 0.012 2.6E-07 55.9 8.8 91 149-266 2-96 (255)
318 PF13460 NAD_binding_10: NADH( 96.6 0.0024 5.2E-08 59.7 4.3 90 150-262 1-99 (183)
319 PRK06718 precorrin-2 dehydroge 96.6 0.022 4.7E-07 54.5 10.8 129 148-317 11-142 (202)
320 PRK09310 aroDE bifunctional 3- 96.6 0.0054 1.2E-07 66.6 7.5 70 148-238 333-402 (477)
321 PRK09424 pntA NAD(P) transhydr 96.5 0.0093 2E-07 64.7 9.0 41 147-187 165-205 (509)
322 PRK13301 putative L-aspartate 96.5 0.013 2.9E-07 57.7 9.1 63 148-235 3-71 (267)
323 PRK08339 short chain dehydroge 96.5 0.033 7.1E-07 55.5 11.9 81 148-234 9-93 (263)
324 COG0169 AroE Shikimate 5-dehyd 96.5 0.0071 1.5E-07 60.6 7.0 42 148-189 127-169 (283)
325 TIGR01035 hemA glutamyl-tRNA r 96.4 0.006 1.3E-07 65.1 6.8 38 148-185 181-219 (417)
326 TIGR02356 adenyl_thiF thiazole 96.4 0.0073 1.6E-07 57.8 6.8 32 148-179 22-54 (202)
327 COG1064 AdhP Zn-dependent alco 96.4 0.13 2.9E-06 52.6 16.1 40 148-187 168-207 (339)
328 PRK08618 ornithine cyclodeamin 96.4 0.0073 1.6E-07 62.3 7.1 91 147-261 127-220 (325)
329 smart00859 Semialdhyde_dh Semi 96.4 0.012 2.6E-07 51.3 7.4 100 149-268 1-105 (122)
330 PRK00045 hemA glutamyl-tRNA re 96.3 0.0045 9.8E-08 66.3 5.1 38 148-185 183-221 (423)
331 PF01113 DapB_N: Dihydrodipico 96.3 0.018 3.9E-07 50.5 8.0 102 148-270 1-106 (124)
332 COG0059 IlvC Ketol-acid reduct 96.3 0.057 1.2E-06 53.7 12.1 88 147-259 18-106 (338)
333 PF01118 Semialdhyde_dh: Semia 96.3 0.0044 9.6E-08 54.1 4.0 99 149-268 1-103 (121)
334 TIGR02992 ectoine_eutC ectoine 96.3 0.016 3.5E-07 59.7 8.9 73 147-236 129-204 (326)
335 PRK12475 thiamine/molybdopteri 96.3 0.0071 1.5E-07 62.6 6.1 33 148-180 25-58 (338)
336 PLN00203 glutamyl-tRNA reducta 96.2 0.0056 1.2E-07 66.7 5.3 40 147-186 266-306 (519)
337 PF03435 Saccharop_dh: Sacchar 96.2 0.0045 9.8E-08 65.5 4.4 38 150-187 1-40 (386)
338 PLN02819 lysine-ketoglutarate 96.2 0.034 7.3E-07 65.1 11.5 77 144-239 566-661 (1042)
339 PF03059 NAS: Nicotianamine sy 96.2 0.011 2.4E-07 58.9 6.4 100 147-261 121-229 (276)
340 PRK06153 hypothetical protein; 96.2 0.01 2.2E-07 61.6 6.3 32 148-179 177-209 (393)
341 PRK00961 H(2)-dependent methyl 96.1 0.23 5.1E-06 48.6 15.0 106 218-326 133-242 (342)
342 COG0373 HemA Glutamyl-tRNA red 96.1 0.0076 1.7E-07 63.2 5.2 41 148-188 179-220 (414)
343 TIGR00561 pntA NAD(P) transhyd 96.1 0.013 2.9E-07 63.4 7.2 41 147-187 164-204 (511)
344 TIGR00745 apbA_panE 2-dehydrop 96.1 0.068 1.5E-06 54.0 12.0 104 158-275 2-107 (293)
345 PRK12828 short chain dehydroge 96.1 0.0092 2E-07 57.9 5.5 39 148-186 8-47 (239)
346 cd05311 NAD_bind_2_malic_enz N 96.0 0.042 9.1E-07 53.5 9.8 32 148-179 26-60 (226)
347 COG1486 CelF Alpha-galactosida 96.0 0.059 1.3E-06 56.8 11.3 75 148-234 4-85 (442)
348 PF02254 TrkA_N: TrkA-N domain 96.0 0.028 6E-07 48.3 7.5 88 150-259 1-94 (116)
349 PRK06603 enoyl-(acyl carrier p 96.0 0.086 1.9E-06 52.4 12.1 81 148-234 9-94 (260)
350 PRK06194 hypothetical protein; 96.0 0.026 5.6E-07 56.8 8.4 42 148-189 7-49 (287)
351 TIGR01921 DAP-DH diaminopimela 96.0 0.058 1.3E-06 55.0 10.8 33 148-180 4-38 (324)
352 KOG2018 Predicted dinucleotide 95.9 0.024 5.1E-07 56.2 7.5 111 123-248 61-186 (430)
353 TIGR01723 hmd_TIGR 5,10-methen 95.9 0.38 8.2E-06 47.3 15.5 106 218-326 131-240 (340)
354 PRK13940 glutamyl-tRNA reducta 95.9 0.0093 2E-07 63.4 5.0 68 148-235 182-251 (414)
355 PRK08340 glucose-1-dehydrogena 95.9 0.014 3E-07 57.9 6.1 81 149-234 2-84 (259)
356 PRK12829 short chain dehydroge 95.9 0.026 5.6E-07 55.9 8.0 83 148-235 12-95 (264)
357 PRK14027 quinate/shikimate deh 95.9 0.014 3.1E-07 58.7 6.1 41 148-188 128-169 (283)
358 PRK12548 shikimate 5-dehydroge 95.9 0.014 3E-07 59.2 6.0 34 148-181 127-161 (289)
359 PRK08291 ectoine utilization p 95.9 0.021 4.6E-07 59.0 7.5 73 147-236 132-207 (330)
360 PRK14175 bifunctional 5,10-met 95.9 0.014 3E-07 58.5 5.8 71 148-262 159-230 (286)
361 PRK01438 murD UDP-N-acetylmura 95.9 0.25 5.3E-06 53.9 16.1 47 134-181 4-50 (480)
362 cd05191 NAD_bind_amino_acid_DH 95.8 0.032 6.9E-07 45.4 6.8 32 147-178 23-55 (86)
363 PF01408 GFO_IDH_MocA: Oxidore 95.8 0.11 2.4E-06 44.7 10.7 38 149-186 2-42 (120)
364 PRK13303 L-aspartate dehydroge 95.8 0.013 2.8E-07 58.7 5.1 29 148-176 2-31 (265)
365 PRK07688 thiamine/molybdopteri 95.8 0.017 3.7E-07 59.8 6.1 33 148-180 25-58 (339)
366 PF00070 Pyr_redox: Pyridine n 95.8 0.016 3.6E-07 46.3 4.7 35 149-183 1-35 (80)
367 PRK11861 bifunctional prephena 95.8 0.062 1.3E-06 61.1 11.1 95 230-326 1-110 (673)
368 PRK06196 oxidoreductase; Provi 95.7 0.021 4.5E-07 58.5 6.7 80 148-234 27-107 (315)
369 PRK14192 bifunctional 5,10-met 95.7 0.023 5E-07 57.2 6.7 33 148-180 160-193 (283)
370 COG2423 Predicted ornithine cy 95.7 0.04 8.7E-07 56.4 8.5 91 146-259 129-222 (330)
371 PRK07326 short chain dehydroge 95.7 0.014 3.1E-07 56.7 5.2 40 148-187 7-47 (237)
372 PRK00048 dihydrodipicolinate r 95.7 0.022 4.7E-07 56.7 6.3 36 148-183 2-40 (257)
373 PRK05866 short chain dehydroge 95.7 0.02 4.2E-07 58.2 6.1 42 148-189 41-83 (293)
374 cd01483 E1_enzyme_family Super 95.7 0.02 4.4E-07 51.4 5.4 32 149-180 1-33 (143)
375 PRK07831 short chain dehydroge 95.6 0.017 3.7E-07 57.3 5.5 44 147-190 17-62 (262)
376 PRK07062 short chain dehydroge 95.6 0.02 4.4E-07 56.8 6.0 43 148-190 9-52 (265)
377 PRK06823 ornithine cyclodeamin 95.6 0.048 1.1E-06 55.8 8.7 72 147-236 128-202 (315)
378 KOG1201 Hydroxysteroid 17-beta 95.6 0.013 2.8E-07 58.3 4.2 43 149-191 40-83 (300)
379 PRK07825 short chain dehydroge 95.6 0.022 4.7E-07 56.9 6.1 80 148-234 6-86 (273)
380 PRK07890 short chain dehydroge 95.6 0.019 4.1E-07 56.7 5.4 42 148-189 6-48 (258)
381 PRK07774 short chain dehydroge 95.5 0.021 4.6E-07 56.0 5.6 40 148-187 7-47 (250)
382 PRK07370 enoyl-(acyl carrier p 95.5 0.06 1.3E-06 53.4 8.9 83 148-235 7-96 (258)
383 PRK06079 enoyl-(acyl carrier p 95.5 0.017 3.8E-07 57.0 5.0 33 148-180 8-43 (252)
384 PRK07454 short chain dehydroge 95.5 0.022 4.9E-07 55.6 5.7 40 147-186 6-46 (241)
385 PRK07832 short chain dehydroge 95.5 0.031 6.6E-07 55.9 6.8 39 149-187 2-41 (272)
386 PRK08267 short chain dehydroge 95.5 0.018 3.8E-07 57.1 4.8 39 148-186 2-41 (260)
387 PRK09496 trkA potassium transp 95.5 0.14 3E-06 55.4 12.1 39 148-186 1-39 (453)
388 KOG1205 Predicted dehydrogenas 95.5 0.11 2.4E-06 51.9 10.3 82 148-234 12-99 (282)
389 COG0686 Ald Alanine dehydrogen 95.4 0.03 6.6E-07 55.7 6.1 93 147-260 168-266 (371)
390 PRK07231 fabG 3-ketoacyl-(acyl 95.4 0.028 6.1E-07 55.1 6.1 40 148-187 6-46 (251)
391 PRK06057 short chain dehydroge 95.4 0.023 4.9E-07 56.2 5.4 39 148-186 8-47 (255)
392 PRK06407 ornithine cyclodeamin 95.4 0.062 1.3E-06 54.7 8.6 73 147-236 117-192 (301)
393 PRK07063 short chain dehydroge 95.4 0.022 4.7E-07 56.5 5.2 43 148-190 8-51 (260)
394 PRK06046 alanine dehydrogenase 95.4 0.054 1.2E-06 55.9 8.3 43 147-189 129-173 (326)
395 PRK10669 putative cation:proto 95.4 0.053 1.1E-06 60.3 8.7 96 148-259 418-513 (558)
396 COG1648 CysG Siroheme synthase 95.4 0.32 7E-06 46.7 12.9 130 148-317 13-145 (210)
397 TIGR03736 PRTRC_ThiF PRTRC sys 95.4 0.031 6.6E-07 54.9 6.0 98 148-250 12-129 (244)
398 PRK06719 precorrin-2 dehydroge 95.4 0.14 3.1E-06 46.8 10.0 32 148-179 14-45 (157)
399 PRK00683 murD UDP-N-acetylmura 95.4 0.12 2.7E-06 55.2 11.1 37 147-183 3-39 (418)
400 PRK05562 precorrin-2 dehydroge 95.4 0.11 2.4E-06 50.2 9.6 127 148-315 26-156 (223)
401 PRK13394 3-hydroxybutyrate deh 95.4 0.031 6.7E-07 55.2 6.2 43 148-190 8-51 (262)
402 PRK08643 acetoin reductase; Va 95.4 0.025 5.5E-07 55.8 5.5 41 148-188 3-44 (256)
403 PRK07523 gluconate 5-dehydroge 95.3 0.025 5.4E-07 55.8 5.4 41 148-188 11-52 (255)
404 PRK08300 acetaldehyde dehydrog 95.3 0.46 1E-05 48.1 14.4 97 148-265 5-104 (302)
405 PRK12429 3-hydroxybutyrate deh 95.3 0.031 6.7E-07 55.0 6.0 41 148-188 5-46 (258)
406 PRK06139 short chain dehydroge 95.3 0.026 5.6E-07 58.4 5.7 82 148-234 8-92 (330)
407 PRK12409 D-amino acid dehydrog 95.3 0.017 3.6E-07 61.6 4.4 33 148-180 2-34 (410)
408 PRK07478 short chain dehydroge 95.3 0.029 6.3E-07 55.3 5.8 43 148-190 7-50 (254)
409 PRK05650 short chain dehydroge 95.3 0.032 6.9E-07 55.6 6.1 40 149-188 2-42 (270)
410 PRK10538 malonic semialdehyde 95.3 0.027 5.9E-07 55.4 5.5 39 148-186 1-40 (248)
411 PRK07024 short chain dehydroge 95.3 0.023 5E-07 56.2 4.9 39 148-186 3-42 (257)
412 PRK05854 short chain dehydroge 95.3 0.034 7.4E-07 57.0 6.3 82 148-234 15-101 (313)
413 PRK05867 short chain dehydroge 95.3 0.025 5.4E-07 55.8 5.1 42 148-189 10-52 (253)
414 PRK08265 short chain dehydroge 95.3 0.021 4.6E-07 56.7 4.6 81 148-234 7-88 (261)
415 PF13241 NAD_binding_7: Putati 95.2 0.066 1.4E-06 45.2 6.9 73 148-249 8-82 (103)
416 PRK12550 shikimate 5-dehydroge 95.2 0.057 1.2E-06 54.1 7.6 39 148-186 123-162 (272)
417 PRK09496 trkA potassium transp 95.2 0.084 1.8E-06 57.0 9.6 41 147-187 231-271 (453)
418 PLN03209 translocon at the inn 95.2 0.067 1.5E-06 58.7 8.6 41 148-188 81-122 (576)
419 PRK03659 glutathione-regulated 95.2 0.061 1.3E-06 60.3 8.6 94 148-263 401-500 (601)
420 KOG0023 Alcohol dehydrogenase, 95.2 0.91 2E-05 45.8 15.6 40 147-187 182-222 (360)
421 PRK12749 quinate/shikimate deh 95.2 0.032 7E-07 56.4 5.8 34 148-181 125-159 (288)
422 PRK09242 tropinone reductase; 95.2 0.033 7.1E-07 55.0 5.6 42 148-189 10-52 (257)
423 PRK07067 sorbitol dehydrogenas 95.2 0.024 5.3E-07 56.0 4.7 40 148-187 7-47 (257)
424 PRK03369 murD UDP-N-acetylmura 95.2 0.2 4.3E-06 54.8 12.1 35 148-182 13-47 (488)
425 PRK07877 hypothetical protein; 95.1 0.014 3.1E-07 65.8 3.2 94 148-250 108-219 (722)
426 PRK07814 short chain dehydroge 95.1 0.037 8E-07 55.0 5.7 41 148-188 11-52 (263)
427 PRK08277 D-mannonate oxidoredu 95.1 0.039 8.4E-07 55.3 5.9 41 148-188 11-52 (278)
428 PRK12939 short chain dehydroge 95.1 0.033 7.3E-07 54.5 5.3 41 148-188 8-49 (250)
429 PRK07677 short chain dehydroge 95.1 0.033 7.2E-07 54.9 5.3 41 148-188 2-43 (252)
430 PRK06197 short chain dehydroge 95.1 0.041 9E-07 56.0 6.2 43 148-190 17-60 (306)
431 PRK07109 short chain dehydroge 95.1 0.036 7.8E-07 57.4 5.7 82 148-234 9-93 (334)
432 TIGR02355 moeB molybdopterin s 95.1 0.043 9.4E-07 53.9 6.0 34 148-181 25-59 (240)
433 PRK08251 short chain dehydroge 95.0 0.041 8.9E-07 53.9 5.9 40 148-187 3-43 (248)
434 PRK06940 short chain dehydroge 95.0 0.033 7.2E-07 55.9 5.3 79 149-234 4-84 (275)
435 PRK00141 murD UDP-N-acetylmura 95.0 0.27 5.8E-06 53.6 12.6 38 145-182 13-50 (473)
436 PRK12826 3-ketoacyl-(acyl-carr 95.0 0.034 7.4E-07 54.4 5.1 40 148-187 7-47 (251)
437 PRK06200 2,3-dihydroxy-2,3-dih 95.0 0.036 7.9E-07 55.0 5.3 39 148-186 7-46 (263)
438 PRK05876 short chain dehydroge 95.0 0.045 9.8E-07 54.9 6.0 41 148-188 7-48 (275)
439 PRK06505 enoyl-(acyl carrier p 95.0 0.044 9.5E-07 54.9 5.9 81 148-234 8-93 (271)
440 PRK06199 ornithine cyclodeamin 95.0 0.065 1.4E-06 56.4 7.3 75 146-235 154-232 (379)
441 PRK05872 short chain dehydroge 94.9 0.037 8E-07 56.2 5.4 40 148-187 10-50 (296)
442 PRK08862 short chain dehydroge 94.9 0.044 9.6E-07 53.3 5.7 43 148-190 6-49 (227)
443 PRK07074 short chain dehydroge 94.9 0.032 6.9E-07 55.1 4.7 40 148-187 3-43 (257)
444 PRK07576 short chain dehydroge 94.9 0.059 1.3E-06 53.6 6.6 40 148-187 10-50 (264)
445 PRK08085 gluconate 5-dehydroge 94.9 0.045 9.7E-07 54.0 5.7 42 148-189 10-52 (254)
446 cd00755 YgdL_like Family of ac 94.9 0.064 1.4E-06 52.3 6.5 33 148-180 12-45 (231)
447 CHL00194 ycf39 Ycf39; Provisio 94.9 0.078 1.7E-06 54.4 7.6 36 148-183 1-37 (317)
448 PRK07589 ornithine cyclodeamin 94.9 0.12 2.7E-06 53.5 8.9 72 146-235 128-202 (346)
449 PRK03562 glutathione-regulated 94.8 0.1 2.2E-06 58.7 9.0 91 147-259 400-496 (621)
450 PRK06172 short chain dehydroge 94.8 0.047 1E-06 53.7 5.7 41 148-188 8-49 (253)
451 PRK08416 7-alpha-hydroxysteroi 94.8 0.12 2.6E-06 51.2 8.6 82 148-234 9-95 (260)
452 PRK05600 thiamine biosynthesis 94.8 0.056 1.2E-06 56.7 6.4 32 148-179 42-74 (370)
453 PRK14189 bifunctional 5,10-met 94.8 0.035 7.6E-07 55.6 4.6 68 148-260 159-228 (285)
454 PRK05690 molybdopterin biosynt 94.8 0.058 1.3E-06 53.2 6.1 32 148-179 33-65 (245)
455 PRK12384 sorbitol-6-phosphate 94.8 0.051 1.1E-06 53.6 5.8 41 148-188 3-44 (259)
456 PRK07984 enoyl-(acyl carrier p 94.8 0.062 1.4E-06 53.5 6.4 81 148-234 7-92 (262)
457 PRK05786 fabG 3-ketoacyl-(acyl 94.8 0.1 2.2E-06 50.7 7.8 39 148-186 6-45 (238)
458 PRK06138 short chain dehydroge 94.8 0.037 8E-07 54.3 4.7 40 148-187 6-46 (252)
459 KOG0725 Reductases with broad 94.7 0.13 2.7E-06 51.7 8.4 173 148-336 8-201 (270)
460 KOG0022 Alcohol dehydrogenase, 94.7 0.44 9.6E-06 47.8 11.9 167 148-352 194-367 (375)
461 PRK08217 fabG 3-ketoacyl-(acyl 94.7 0.061 1.3E-06 52.7 6.2 40 148-187 6-46 (253)
462 PRK07666 fabG 3-ketoacyl-(acyl 94.7 0.063 1.4E-06 52.3 6.2 40 148-187 8-48 (239)
463 PF13380 CoA_binding_2: CoA bi 94.7 0.16 3.5E-06 43.9 8.0 80 148-258 1-85 (116)
464 COG1063 Tdh Threonine dehydrog 94.7 0.035 7.6E-07 57.9 4.5 40 149-188 171-211 (350)
465 PRK08223 hypothetical protein; 94.7 0.067 1.4E-06 53.7 6.2 33 148-180 28-61 (287)
466 PRK06500 short chain dehydroge 94.7 0.037 8E-07 54.2 4.4 38 148-185 7-45 (249)
467 PRK06124 gluconate 5-dehydroge 94.7 0.056 1.2E-06 53.3 5.8 42 147-188 11-53 (256)
468 PLN02253 xanthoxin dehydrogena 94.7 0.036 7.7E-07 55.6 4.4 39 148-186 19-58 (280)
469 PRK15116 sulfur acceptor prote 94.7 0.053 1.1E-06 54.0 5.4 33 148-180 31-64 (268)
470 TIGR03325 BphB_TodD cis-2,3-di 94.6 0.039 8.5E-07 54.7 4.6 38 148-185 6-44 (262)
471 PRK07035 short chain dehydroge 94.6 0.053 1.1E-06 53.3 5.5 41 148-188 9-50 (252)
472 PRK07097 gluconate 5-dehydroge 94.6 0.06 1.3E-06 53.5 5.8 42 148-189 11-53 (265)
473 cd01484 E1-2_like Ubiquitin ac 94.6 0.078 1.7E-06 51.8 6.3 32 149-180 1-33 (234)
474 PRK08213 gluconate 5-dehydroge 94.6 0.062 1.4E-06 53.1 5.9 41 148-188 13-54 (259)
475 TIGR03206 benzo_BadH 2-hydroxy 94.6 0.055 1.2E-06 53.0 5.5 40 148-187 4-44 (250)
476 PRK05693 short chain dehydroge 94.6 0.045 9.8E-07 54.7 4.9 37 148-184 2-39 (274)
477 PRK08589 short chain dehydroge 94.6 0.051 1.1E-06 54.3 5.2 42 148-190 7-49 (272)
478 PRK05875 short chain dehydroge 94.5 0.064 1.4E-06 53.5 5.8 40 148-187 8-48 (276)
479 PRK06270 homoserine dehydrogen 94.5 0.14 3.1E-06 53.1 8.5 22 148-169 3-24 (341)
480 COG0623 FabI Enoyl-[acyl-carri 94.5 0.13 2.8E-06 49.2 7.3 174 148-332 7-191 (259)
481 PRK05599 hypothetical protein; 94.5 0.067 1.5E-06 52.6 5.8 80 149-234 2-85 (246)
482 PRK08415 enoyl-(acyl carrier p 94.5 0.051 1.1E-06 54.5 5.0 81 148-234 6-91 (274)
483 PRK07069 short chain dehydroge 94.5 0.053 1.2E-06 53.1 5.1 38 149-186 1-40 (251)
484 PRK06720 hypothetical protein; 94.5 0.085 1.8E-06 48.9 6.1 39 148-186 17-56 (169)
485 PRK05653 fabG 3-ketoacyl-(acyl 94.5 0.082 1.8E-06 51.4 6.3 39 148-186 6-45 (246)
486 PRK06182 short chain dehydroge 94.4 0.057 1.2E-06 53.9 5.2 38 148-185 4-42 (273)
487 PRK14106 murD UDP-N-acetylmura 94.4 0.44 9.6E-06 51.4 12.5 33 148-180 6-38 (450)
488 PRK06949 short chain dehydroge 94.4 0.072 1.6E-06 52.5 5.9 40 148-187 10-50 (258)
489 COG1062 AdhC Zn-dependent alco 94.4 0.54 1.2E-05 47.8 11.8 40 148-187 187-227 (366)
490 PRK05597 molybdopterin biosynt 94.4 0.046 1E-06 57.0 4.7 33 148-180 29-62 (355)
491 COG1179 Dinucleotide-utilizing 94.4 0.14 3.1E-06 49.3 7.4 99 148-250 31-144 (263)
492 cd00757 ThiF_MoeB_HesA_family 94.4 0.12 2.5E-06 50.5 7.1 33 148-180 22-55 (228)
493 PRK08762 molybdopterin biosynt 94.4 0.059 1.3E-06 56.8 5.3 32 148-179 136-168 (376)
494 TIGR00036 dapB dihydrodipicoli 94.4 0.15 3.2E-06 51.0 7.9 32 148-179 2-36 (266)
495 PRK05717 oxidoreductase; Valid 94.4 0.052 1.1E-06 53.6 4.7 38 148-185 11-49 (255)
496 TIGR02415 23BDH acetoin reduct 94.3 0.07 1.5E-06 52.4 5.6 40 148-187 1-41 (254)
497 PRK08594 enoyl-(acyl carrier p 94.3 0.051 1.1E-06 53.9 4.5 82 148-234 8-95 (257)
498 PRK04207 glyceraldehyde-3-phos 94.3 0.16 3.4E-06 52.8 8.1 106 148-264 2-111 (341)
499 PRK06180 short chain dehydroge 94.3 0.059 1.3E-06 54.0 4.9 39 147-185 4-43 (277)
500 PRK05855 short chain dehydroge 94.2 0.11 2.5E-06 57.5 7.7 42 148-189 316-358 (582)
No 1
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=100.00 E-value=6.5e-106 Score=897.41 Aligned_cols=540 Identities=31% Similarity=0.504 Sum_probs=487.7
Q ss_pred CcccCCCCChHHHHhCCCcceecCC-------------cchHHHHHHHHHhhhccCCCchhhhcccCCCCC-----chhH
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAP-------------NQLVSTARQWALDILEHRRPWVATLYKTDKIEP-----LGEA 62 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~-------------~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~-----~~~~ 62 (560)
|+|||++++|++|+++||||+|||+ +++.+.|.+++++++..+.+..+......++.+ ....
T Consensus 174 l~ltG~~i~a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~~l~~~A~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (737)
T TIGR02441 174 MMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANGKLSINRDKGLVHKITQYVMTNPFVR 253 (737)
T ss_pred HHHcCCcCCHHHHHHCCCCeEecCCcccccccchhhhHHHHHHHHHHHHHHhhcccCCccccccccCccchhhcccchhH
Confidence 5899999999999999999999987 458888999998876643222111111111111 0123
Q ss_pred HHHHHHHHHHHHHhCCC-CCcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhccCCCCCCCCCCCC
Q 008604 63 REIFKFARAQARKQAPN-LTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLG 141 (560)
Q Consensus 63 ~~~~~~~~~~~~~~~~~-~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~~~~~~~~~~ 141 (560)
...+..+++++.++.++ ||||.+++++|+.+...+++++++.|++.|.+|+.|++++++++.|+.++.+++.+..
T Consensus 254 ~~~~~~~~~~~~~~~~g~~~Ap~~~l~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~al~~~f~~~~~~~~~~~~---- 329 (737)
T TIGR02441 254 QQVYKTAEDKVMKQTKGLYPAPLKILDVVRTGYDQGPDAGYEAESKAFGELSMTFESKALIGLFHGQTDCKKNKFG---- 329 (737)
T ss_pred HHHHHHHHHHHHHhccCCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCCC----
Confidence 45777888888888776 9999999999999999999999999999999999999999999999999999886431
Q ss_pred CCcccceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 008604 142 LAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (560)
Q Consensus 142 ~~~~~~~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (560)
..+++|++|+|||+|+||++||..++.+|++|+++|++++.++++.+++.+.+++.+++|.+++++.++.+++|++++++
T Consensus 330 ~~~~~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 409 (737)
T TIGR02441 330 KPQRPVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDY 409 (737)
T ss_pred CCCCcccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCH
Confidence 13467999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccHHHHHhhccCCCcEeecccCCCCCCCCeEEEEeCC
Q 008604 222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTN 301 (560)
Q Consensus 222 ~~~~~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~~la~~~~~~~r~~g~hf~~P~~~~~lvEiv~g~ 301 (560)
+++++||+|||||+|++++|+++|+++++++++++||+||||+++++++++.+.+|+||+|+|||||++.|+||||++|+
T Consensus 410 ~~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m~LvEvv~g~ 489 (737)
T TIGR02441 410 SGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQLLEIITHD 489 (737)
T ss_pred HHhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccCceEEEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHhcCCceEEecCccccchhchHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHHHHhhhHH
Q 008604 302 QTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGV 381 (560)
Q Consensus 302 ~t~~e~~~~~~~l~~~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~~~~dID~a~~~~G~~~GPf~~~D~~Gld~ 381 (560)
.|++++++.+..+++.+||+||+++|+||||+||++.++++||++++++|++++|||.+++++|||||||+++|.+|||+
T Consensus 490 ~Ts~~~~~~~~~~~~~lgk~pv~v~d~pGFi~NRi~~~~~~ea~~lv~eGv~~~~ID~a~~~~G~p~GP~~l~D~vGld~ 569 (737)
T TIGR02441 490 GTSKDTLASAVAVGLKQGKVVIVVKDGPGFYTTRCLGPMLAEVIRLLQEGVDPKKLDKLTTKFGFPVGAATLADEVGVDV 569 (737)
T ss_pred CCCHHHHHHHHHHHHHCCCeEEEECCcCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCCHHHHHHHhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCc--ccchHHHHHHCCCCccccCceeeeecCCC--CCCCChhHHHHHHHHhhccCccCCcccccC
Q 008604 382 AIATGMQFIENFPERTY--KSMIIPIMQEDKRAGETTRKGFYLYDERR--KASPDPEVKKFIEKARSMSGVAIDPKFAKL 457 (560)
Q Consensus 382 ~~~~~~~l~~~~~~~~~--~~~~l~~~v~~G~~G~k~g~GfY~y~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (560)
+.++++.++..+++++. |++++.+|+++|++|+|||+|||+|++++ +..+++++..++...... + .....
T Consensus 570 ~~~v~~~l~~~~~~~~~~~~~~~l~~~v~~G~~G~k~G~GfY~y~~~~~~~~~~~~~v~~~~~~~~k~----p--~~~~~ 643 (737)
T TIGR02441 570 AEHVAEDLGKAFGERFGGGSAELLSELVKAGFLGRKSGKGIFIYQEGKKGSKKVNSDADEILAQYKLP----P--KAEVS 643 (737)
T ss_pred HHHHHHHHHHhcCcccccccCHHHHHHHHCCCCcccCCCeeEEcCCCCCCcCCCCHHHHHHHHHhccC----c--ccccC
Confidence 99999999998887653 57899999999999999999999998654 467889888876544321 1 00124
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCcH
Q 008604 458 SEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCA 537 (560)
Q Consensus 458 ~~~~i~~r~l~~~~~ea~~~l~egv~~~~~diD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~ 537 (560)
++.+|.||++.+|+|||++||+|||+.+|+|||.+|++|+|||+|+||||+|+|.+|++.+++.++.|++.+|++|.|++
T Consensus 644 ~~g~I~~Rll~~~~nEA~rlLeEGV~a~~~DID~a~~~G~GfP~~~gGP~~~aD~~Gld~v~~~~~~l~~~~g~~~~p~~ 723 (737)
T TIGR02441 644 SPEDIQIRLVSRFVNEAVLCLEEGILASPSEGDIGAVFGLGFPPFLGGPFRFVDLYGADKLVDKMEKYAAAYGVQFTPCQ 723 (737)
T ss_pred ChHHHHHHHHHHHHHHHHHHhhcCccCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHHHHHHHHHHHHhCCCcCCCH
Confidence 67899999999999999999999997799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHc-CCCCc
Q 008604 538 FLAERAGK-GATLS 550 (560)
Q Consensus 538 ~l~~~~~~-g~~f~ 550 (560)
+|++|+++ |++||
T Consensus 724 lL~~~~~~~g~~f~ 737 (737)
T TIGR02441 724 LLLDHAKSPGKKFY 737 (737)
T ss_pred HHHHHHHhcCCCCC
Confidence 99999999 99997
No 2
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=100.00 E-value=6.5e-104 Score=879.82 Aligned_cols=537 Identities=31% Similarity=0.556 Sum_probs=481.6
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCC----CchhHHHHHHHHHHHH-HH
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIE----PLGEAREIFKFARAQA-RK 75 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~ 75 (560)
|+|||++++|++|+++||||+|||+++++++|.++++++.....+|.+... .+.. +.......+..+++++ ++
T Consensus 166 llltG~~~~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (714)
T TIGR02437 166 WIASGKENRAEDALKVGAVDAVVTADKLGAAALQLLKDAINGKLDWKAKRQ--PKLEPLKLSKIEAMMSFTTAKGMVAQV 243 (714)
T ss_pred HHHcCCcCCHHHHHHCCCCcEeeChhHHHHHHHHHHHHHhhcCCcccccCC--CCcccccccchHHHHHHHHHHHHHHHh
Confidence 579999999999999999999999999999999999887664223222111 1111 1111123455566634 44
Q ss_pred hCCCCCcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhccCCCCCCCCCCCCCCcccceEEEEEcC
Q 008604 76 QAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGG 155 (560)
Q Consensus 76 ~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~~~~~~~~~~~~~~~~~~V~VIG~ 155 (560)
+.++||||..++++++.+...+++++++.|++.|.+|+.|+++++++++|+.+|.+++.+.. .+..+++|++|+|||+
T Consensus 244 ~~~~~pap~~~~~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~~l~~~ff~~r~~~~~~~~--~~~~~~~i~~v~ViGa 321 (714)
T TIGR02437 244 AGPHYPAPMTAVKTIEKAARFGRDKALEIEAKGFVKLAKTSEAKALIGLFLNDQYVKGKAKK--ADKIAKDVKQAAVLGA 321 (714)
T ss_pred hcCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhHhhcCCCCC--CCCCccccceEEEECC
Confidence 56789999999999999999999999999999999999999999999999999999886422 1234578999999999
Q ss_pred ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCCEEEEecc
Q 008604 156 GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAII 235 (560)
Q Consensus 156 G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~ 235 (560)
|+||++||..++.+|++|+++|++++.++++.+++.+.++..+++|.+++++.++.+++|+++++++++++||+|||||+
T Consensus 322 G~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlViEav~ 401 (714)
T TIGR02437 322 GIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAGFDNVDIVVEAVV 401 (714)
T ss_pred chHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhcCCCEEEEcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhcCCCceeeccCCcccHHHHHhhccCCCcEeecccCCCCCCCCeEEEEeCCCCcHHHHHHHHHHH
Q 008604 236 ENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIG 315 (560)
Q Consensus 236 e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~~la~~~~~~~r~~g~hf~~P~~~~~lvEiv~g~~t~~e~~~~~~~l~ 315 (560)
|++++|+++|+++++++++++||+||||++++++|++.+.+|+||+|+|||||++.||||||++|+.|++++++.+..++
T Consensus 402 E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~lvEvv~g~~Ts~~~~~~~~~~~ 481 (714)
T TIGR02437 402 ENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKSSDETIATVVAYA 481 (714)
T ss_pred ccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEeecCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCceEEecCccccchhchHHHHHHHHHHHHHcCCCHHHHHHHHH-hcCCCccHHHHHHHhhhHHHHHHHHHHHHhCC
Q 008604 316 KKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIATGMQFIENFP 394 (560)
Q Consensus 316 ~~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~~~~dID~a~~-~~G~~~GPf~~~D~~Gld~~~~~~~~l~~~~~ 394 (560)
+.+||+||+|+|+||||+||++.++++||++++++|+++++||.+++ ++|||||||+++|.+|||+++++++.++..++
T Consensus 482 ~~lgk~pv~v~d~pGfi~NRl~~~~~~ea~~l~~eG~~~~~ID~a~~~~~G~p~GPf~l~D~~Gld~~~~i~~~~~~~~~ 561 (714)
T TIGR02437 482 SKMGKTPIVVNDCPGFFVNRVLFPYFGGFSKLLRDGADFVRIDKVMEKQFGWPMGPAYLLDVVGIDTGHHAQAVMAEGFP 561 (714)
T ss_pred HHcCCEEEEeCCcccchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhcCCCccCHHHHHHhhhHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999998 89999999999999999999999999998888
Q ss_pred CCCc--ccchHHHHHHCCCCccccCceeeeecCC---C-CCCCChhHHHHHHHHhhccCccCCcccccCCHHHHHHHHHH
Q 008604 395 ERTY--KSMIIPIMQEDKRAGETTRKGFYLYDER---R-KASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFF 468 (560)
Q Consensus 395 ~~~~--~~~~l~~~v~~G~~G~k~g~GfY~y~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~l~ 468 (560)
+++. +++++.+|+++|++|+|||+|||+|+++ + +..+|+++..++...+. . ...++.++|+||++.
T Consensus 562 ~~~~~~~~~~l~~~v~~G~lG~K~g~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~----~----~~~~~~~~i~~Rll~ 633 (714)
T TIGR02437 562 DRMGKDGRDAIDALFEAKRLGQKNGKGFYAYEADKKGKPKKLVDSSVLELLKPVVY----E----QRDFDDEEIIARMMI 633 (714)
T ss_pred cccccchhHHHHHHHHCCCCcccCCCEEEecccCcCccccCCCCHHHHHHHHHhhc----c----cCCCCHHHHHHHHHH
Confidence 7642 4689999999999999999999999643 2 45678888777654321 0 114677899999999
Q ss_pred HHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHcCCC
Q 008604 469 PVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAGKGAT 548 (560)
Q Consensus 469 ~~~~ea~~~l~egv~~~~~diD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~~ 548 (560)
+++|||++||+|||+.+|+|||.+|++|+|||+|+||||+|+|.+|++++++.++.|. .+|++|.|+++|++|+++|++
T Consensus 634 ~~~nEa~~ll~eGiva~~~dID~~~~~G~Gfp~~~gGP~~~~D~~Gl~~~~~~~~~~~-~~g~~~~p~~~l~~~~~~g~~ 712 (714)
T TIGR02437 634 PMINETVRCLEEGIVATAAEADMGLVYGLGFPPFRGGAFRYLDSIGVANFVALADQYA-ELGALYQVTAKLREMAKNGQS 712 (714)
T ss_pred HHHHHHHHHHhCCCcCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHHHHHHHHHH-HhCCCCCCCHHHHHHHHcCCC
Confidence 9999999999999887999999999999999999999999999999999999999766 789999999999999999999
Q ss_pred Cc
Q 008604 549 LS 550 (560)
Q Consensus 549 f~ 550 (560)
||
T Consensus 713 f~ 714 (714)
T TIGR02437 713 FY 714 (714)
T ss_pred CC
Confidence 97
No 3
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=100.00 E-value=1.3e-101 Score=861.64 Aligned_cols=533 Identities=34% Similarity=0.556 Sum_probs=479.6
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCC--CCchhHHHHHHHHHHHHHHhC-
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKI--EPLGEAREIFKFARAQARKQA- 77 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~- 77 (560)
|+|||++++|++|+++||||+|||+++++++|.++|++. . +.+++......+ .++......+..+.++++++.
T Consensus 162 llltG~~~~a~eA~~~GLV~~vv~~~~l~~~a~~~A~~~--~--~~~~~~~~~~~~~~~~~~a~~~~~~~~~k~~~~~~~ 237 (699)
T TIGR02440 162 MILTGKQLRAKQALKLGLVDDVVPQSILLDTAVEMALKG--K--PIRKPLSLQERLLEGTPLGRALLFDQAAKKTAKKTQ 237 (699)
T ss_pred HHHcCCcCCHHHHHhCCCCcEecChhHHHHHHHHHHHhC--C--CCCCCccchhhhcccCchhHHHHHHHHHHHHHHhcc
Confidence 578999999999999999999999999999999999751 1 111110000111 111122345555666666654
Q ss_pred CCCCcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhccCCCCCCCCCCCCCCcccceEEEEEcCcc
Q 008604 78 PNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGL 157 (560)
Q Consensus 78 ~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~~~~~~~~~~~~~~~~~~V~VIG~G~ 157 (560)
++|||+.++|++++++...+++++++.|++.|..++.|+|+++++++|+.++..++.+... ..+.++++|+|||+|+
T Consensus 238 ~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~~f~~~~~~~~~~~~~---~~~~~i~~v~ViGaG~ 314 (699)
T TIGR02440 238 GNYPAAERILDVVRQGLAQGMQKGLDAEARAFGELVMTPESAALRSIFFATTEMKKETGSD---ATPAKIKKVGILGGGL 314 (699)
T ss_pred cCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCCC---CCcccccEEEEECCcH
Confidence 4799999999999999999999999999999999999999999999999999887764421 2345789999999999
Q ss_pred chHHHHHHHH-hCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCCEEEEeccC
Q 008604 158 MGSGIATALI-LSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIE 236 (560)
Q Consensus 158 mG~~iA~~l~-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~e 236 (560)
||++||..++ ++|++|+++|++++.++++..++.+.+++.+++|.+++++.+..+++|+++++++++++||+|||||||
T Consensus 315 mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~adlViEav~E 394 (699)
T TIGR02440 315 MGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYRGFKDVDIVIEAVFE 394 (699)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChHHhccCCEEEEeccc
Confidence 9999999998 589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhhcCCCceeeccCCcccHHHHHhhccCCCcEeecccCCCCCCCCeEEEEeCCCCcHHHHHHHHHHHH
Q 008604 237 NVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGK 316 (560)
Q Consensus 237 ~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~~la~~~~~~~r~~g~hf~~P~~~~~lvEiv~g~~t~~e~~~~~~~l~~ 316 (560)
++++|+++|+++++++++++||+||||++++++|++.+.+|+||+|+|||||++.+++|||++|+.|++++++.+..|++
T Consensus 395 ~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~HffnP~~~~~lVEvv~g~~T~~~~~~~~~~~~~ 474 (699)
T TIGR02440 395 DLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIPHAGTSEQTIATTVALAK 474 (699)
T ss_pred cHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCceEEecCccccchhchHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHHHHhhhHHHHHHHHHHHHhCCCC
Q 008604 317 KIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPER 396 (560)
Q Consensus 317 ~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~~~~dID~a~~~~G~~~GPf~~~D~~Gld~~~~~~~~l~~~~~~~ 396 (560)
.+||+||+|+|.||||+||++.++++|+++++++|++++|||.+++++|||||||+++|.+|+|++.++++.+++.++++
T Consensus 475 ~~gk~pv~v~d~pGfi~nRl~~~~~~Ea~~l~~~G~~~~dID~a~~~~G~p~GPf~l~D~vGld~~~~i~~~l~~~~~~~ 554 (699)
T TIGR02440 475 KQGKTPIVVADKAGFYVNRILAPYMNEAARLLLEGEPVEHIDKALVKFGFPVGPITLLDEVGIDVGAKISPILEAELGER 554 (699)
T ss_pred HcCCeEEEEccccchHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcCCCcCHHHHHHHhchHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CcccchHHHHHHCCCCccccCceeeeecCC-CCCCCChhHHHHHHHHhhccCccCCcccccCCHHHHHHHHHHHHHHHHH
Q 008604 397 TYKSMIIPIMQEDKRAGETTRKGFYLYDER-RKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEAC 475 (560)
Q Consensus 397 ~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~l~~~~~ea~ 475 (560)
+.|++++.+|+++|++|+|||+|||+|+++ .+..+++.+..++.. .+ ...++..++.||++.+++|||+
T Consensus 555 ~~~~~~l~~~v~~G~lG~ksg~GfY~y~~~~~~~~~~~~~~~~~~~-------~~---~~~~~~g~v~~Rll~~~~~Ea~ 624 (699)
T TIGR02440 555 FKAPAVFDKLLSDDRKGRKNGKGFYLYGAATKKKAVDESVYGLLGI-------KP---GVDKEASAVAERCVMLMLNEAV 624 (699)
T ss_pred CCCcHHHHHHHHCCCCcccCCcEEEeCCCCCCcCCCCHHHHHHhCc-------CC---CCCCCHHHHHHHHHHHHHHHHH
Confidence 888899999999999999999999999854 345677777655411 10 1145678999999999999999
Q ss_pred HHhhcCcCCChhHHHHHHHHhcCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHcCCCCc
Q 008604 476 RVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAGKGATLS 550 (560)
Q Consensus 476 ~~l~egv~~~~~diD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~~f~ 550 (560)
+|++|||+.+|+|||.+|++|+|||+|+||||+|+|.+|++.+++.++.|++.+|++|.|+++|++|++.|++||
T Consensus 625 ~ll~eGvva~~~dID~~~~~g~G~p~~~~Gpf~~~D~~Gld~~~~~~~~l~~~~g~~~~p~~~L~~~~~~~~~f~ 699 (699)
T TIGR02440 625 RCLDEGVIRSPRDGDIGAIFGIGFPPFLGGPFRYIDTLGADNVVKILERLQTQYGDRFTPCQRLVAMAAEKQSFY 699 (699)
T ss_pred HHHHCCCcCCHHHHHHHHHhcCCCCCCcCCHHHHHHHhCHHHHHHHHHHHHHHcCCCcCCCHHHHHHHHcCCCcC
Confidence 999999966999999999999999999999999999999999999999999999999999999999999999997
No 4
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=2.1e-101 Score=862.09 Aligned_cols=537 Identities=34% Similarity=0.579 Sum_probs=482.5
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCc----hhHHHHHHHHHHHH-HH
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPL----GEAREIFKFARAQA-RK 75 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~ 75 (560)
|+|||++++|+||+++||||+|||+++++++|.++|++++..+.+|.+.. .....+. ......++.+++.+ ++
T Consensus 166 llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~--~~~~~p~a~~~~~~~~~~~~~k~~~~~~ 243 (715)
T PRK11730 166 WIAAGKDVRAEDALKVGAVDAVVAPEKLQEAALALLKQAIAGKLDWKARR--QPKLEPLKLSKIEAMMSFTTAKGMVAQK 243 (715)
T ss_pred HHHcCCcCCHHHHHHCCCCeEecCHHHHHHHHHHHHHHHhhcCCcccccc--CcccccccccchhHHHHHHHHHHHHHHh
Confidence 57999999999999999999999999999999999999998633332221 1111111 12234566666665 44
Q ss_pred hCCCCCcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhccCCCCCCCCCCCCCCcccceEEEEEcC
Q 008604 76 QAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGG 155 (560)
Q Consensus 76 ~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~~~~~~~~~~~~~~~~~~V~VIG~ 155 (560)
..++|||+..++++++.+...+++++++.|.+.|..++.|+|+++++++|+++|.+++.+... ...+++|++|+|||+
T Consensus 244 ~~~~~pa~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~d~~egi~aF~~~~~~~~~~~~~--~~~~~~i~~v~ViGa 321 (715)
T PRK11730 244 AGKHYPAPMTAVKTIEAAAGLGRDEALELEAKGFVKLAKTNVARALVGIFLNDQYVKGKAKKL--AKDAKPVKQAAVLGA 321 (715)
T ss_pred hccCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCCC--CCCccccceEEEECC
Confidence 566899999999999999988999999999999999999999999999999999998765321 123467999999999
Q ss_pred ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCCEEEEecc
Q 008604 156 GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAII 235 (560)
Q Consensus 156 G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~ 235 (560)
|+||++||..++.+|++|+++|++++.++++.+++.+.+++.+++|.+++++.++.+++|+++++++++++||+|||||+
T Consensus 322 G~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlViEav~ 401 (715)
T PRK11730 322 GIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGFERVDVVVEAVV 401 (715)
T ss_pred chhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhcCCCEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhcCCCceeeccCCcccHHHHHhhccCCCcEeecccCCCCCCCCeEEEEeCCCCcHHHHHHHHHHH
Q 008604 236 ENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIG 315 (560)
Q Consensus 236 e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~~la~~~~~~~r~~g~hf~~P~~~~~lvEiv~g~~t~~e~~~~~~~l~ 315 (560)
|++++|+++|+++++++++++||+||||++|+++|++.+.+|+||+|+|||||++.++||||++|+.|++++++.+..++
T Consensus 402 E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~~T~~~~~~~~~~~~ 481 (715)
T PRK11730 402 ENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIATVVAYA 481 (715)
T ss_pred CcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEEeeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCceEEecCccccchhchHHHHHHHHHHHHHcCCCHHHHHHHHH-hcCCCccHHHHHHHhhhHHHHHHHHHHHHhCC
Q 008604 316 KKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIATGMQFIENFP 394 (560)
Q Consensus 316 ~~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~~~~dID~a~~-~~G~~~GPf~~~D~~Gld~~~~~~~~l~~~~~ 394 (560)
+.+||.||+|+|+||||+||++.++++|+++++++|++++|||.+++ ++|||||||+++|.+|||++.++++.++..++
T Consensus 482 ~~lgk~pv~v~d~pGfv~nRi~~~~~~ea~~lv~~Ga~~e~ID~a~~~~~G~~~GP~~~~D~~Gld~~~~~~~~~~~~~~ 561 (715)
T PRK11730 482 SKMGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDGADFRQIDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAVMAEGFP 561 (715)
T ss_pred HHhCCceEEecCcCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhCCCccCHHHHHHhhchHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999998 89999999999999999999999999999888
Q ss_pred CCCc--ccchHHHHHHCCCCccccCceeeeecCCC----CCCCChhHHHHHHHHhhccCccCCcccccCCHHHHHHHHHH
Q 008604 395 ERTY--KSMIIPIMQEDKRAGETTRKGFYLYDERR----KASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFF 468 (560)
Q Consensus 395 ~~~~--~~~~l~~~v~~G~~G~k~g~GfY~y~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~l~ 468 (560)
++.. +++++.+|+++|++|+|||+|||+|+++. +...|+.+..++..... . ...++.++|.||++.
T Consensus 562 ~~~~~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~----~----~~~~~~~~i~nRll~ 633 (715)
T PRK11730 562 DRMKKDYRDAIDVLFEAKRFGQKNGKGFYRYEEDKKGKPKKEVDPAVYELLAPVVQ----P----KREFSDEEIIARMMI 633 (715)
T ss_pred CccccchhHHHHHHHHCCCCccccCCEeEecccCCCcccccCCCHHHHHHHHHhcc----c----cCCCCHHHHHHHHHH
Confidence 7642 46899999999999999999999997432 34577887776654321 0 124678899999999
Q ss_pred HHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHcCCC
Q 008604 469 PVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAGKGAT 548 (560)
Q Consensus 469 ~~~~ea~~~l~egv~~~~~diD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~~ 548 (560)
+++|||++|++|||+.+|+|||.+|++|+|||+|+||||+|+|.+|++.+++.++.|. .++++|+|+++|++|+++|++
T Consensus 634 ~~~~Ea~~ll~eGvva~~~dID~a~~~g~G~p~~~gGPf~~~D~~Gld~~~~~~~~~~-~~~~~~~p~~~L~~~v~~~~~ 712 (715)
T PRK11730 634 PMINEVVRCLEEGIVASPAEADMALVYGLGFPPFRGGAFRYLDTLGVANYVALADKYA-HLGPLYQVPEGLREMAANGES 712 (715)
T ss_pred HHHHHHHHHHhcCCcCCHHHHHHHHHhCCCCCCCcCCHHHHHHHhCHHHHHHHHHHHH-HcCCCCCCCHHHHHHHHcCCC
Confidence 9999999999999866999999999999999999999999999999999999999876 588899999999999999999
Q ss_pred Cc
Q 008604 549 LS 550 (560)
Q Consensus 549 f~ 550 (560)
||
T Consensus 713 f~ 714 (715)
T PRK11730 713 YY 714 (715)
T ss_pred CC
Confidence 97
No 5
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=4.9e-101 Score=859.26 Aligned_cols=533 Identities=35% Similarity=0.555 Sum_probs=481.8
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCC--CchhHHHHHHHHHHHHHHhCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIE--PLGEAREIFKFARAQARKQAP 78 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 78 (560)
|+|||++++|+||+++||||+|||+++++++|.++|+++.. ++++.....++. ++......+..++++++++.+
T Consensus 167 llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~A~~~~~----~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 242 (708)
T PRK11154 167 MILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAKKGKP----ARRPLPVRERLLEGNPLGRALLFKQARKKTLAKTQ 242 (708)
T ss_pred HHHhCCcCCHHHHHHCCCCcEecChHHHHHHHHHHHHhcCC----ccCcCCchhhhcccCchhHHHHHHHHHHHHHHhcc
Confidence 57999999999999999999999999999999999988421 111100000111 111224567777888888765
Q ss_pred -CCCcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhccCCCCCCCCCCCCCCcccceEEEEEcCcc
Q 008604 79 -NLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGL 157 (560)
Q Consensus 79 -~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~~~~~~~~~~~~~~~~~~V~VIG~G~ 157 (560)
+|+|+..+|++++.+...+++++++.|.+.|..++.|+|+++++++|+.++.+++.+... ..++++++|+|||+|+
T Consensus 243 g~~~A~~~~k~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~aF~~~~~~~~~~~~~---~~~~~i~~v~ViGaG~ 319 (708)
T PRK11154 243 GNYPAPERILDVVRTGLEKGMSSGYEAEARAFGELAMTPESAALRSIFFATTEMKKDTGSD---AKPRPVNKVGVLGGGL 319 (708)
T ss_pred cCChHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCCC---CCCCcccEEEEECCch
Confidence 799999999999999999999999999999999999999999999999999887764422 1346799999999999
Q ss_pred chHHHHHHHH-hCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCCEEEEeccC
Q 008604 158 MGSGIATALI-LSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIE 236 (560)
Q Consensus 158 mG~~iA~~l~-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~e 236 (560)
||++||..++ .+|++|+++|++++.++++..++++.+++.+++|.+++++.++.+++|+++++++++++||+|||||+|
T Consensus 320 mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aDlViEav~E 399 (708)
T PRK11154 320 MGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRGFKHADVVIEAVFE 399 (708)
T ss_pred hhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChHHhccCCEEeecccc
Confidence 9999999999 889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhhcCCCceeeccCCcccHHHHHhhccCCCcEeecccCCCCCCCCeEEEEeCCCCcHHHHHHHHHHHH
Q 008604 237 NVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGK 316 (560)
Q Consensus 237 ~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~~la~~~~~~~r~~g~hf~~P~~~~~lvEiv~g~~t~~e~~~~~~~l~~ 316 (560)
++++|+++|+++++++++++||+||||++++++|++.+.+|+||+|+|||||++.+|+|||++|++|++++++.+..+++
T Consensus 400 ~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~g~~Ts~~~~~~~~~~~~ 479 (708)
T PRK11154 400 DLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETIATTVALAK 479 (708)
T ss_pred cHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCceEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCceEEecCccccchhchHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCccHHHHHHHhhhHHHHHHHHHHHHhCCCC
Q 008604 317 KIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPER 396 (560)
Q Consensus 317 ~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~~~~dID~a~~~~G~~~GPf~~~D~~Gld~~~~~~~~l~~~~~~~ 396 (560)
.+||.|++++|+||||+||++.++++|+++++++|++++|||.+++++|||+|||+++|.+|+|++.++++.+++.++++
T Consensus 480 ~~gk~pv~v~d~pGfi~nRl~~~~~~EA~~lv~eGv~~~dID~a~~~~G~p~GPf~~~D~~Gld~~~~i~~~l~~~~~~~ 559 (708)
T PRK11154 480 KQGKTPIVVRDGAGFYVNRILAPYINEAARLLLEGEPIEHIDAALVKFGFPVGPITLLDEVGIDVGTKIIPILEAALGER 559 (708)
T ss_pred HcCCceEEEeccCcHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCCHHHHHHHhhhHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CcccchHHHHHHCCCCccccCceeeeecCCC---CCCCChhHHHHHHHHhhccCccCCcccccCCHHHHHHHHHHHHHHH
Q 008604 397 TYKSMIIPIMQEDKRAGETTRKGFYLYDERR---KASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNE 473 (560)
Q Consensus 397 ~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~l~~~~~e 473 (560)
+.+++++++|+++|++|+|||+|||+|+++. +...++++...+.. .+ ...++..+|.||++.+|+||
T Consensus 560 ~~~~~~l~~~v~~g~~G~k~g~GfY~y~~~~~~~~~~~~~~~~~~~~~-------~~---~~~~~~g~i~~Rll~~~~nE 629 (708)
T PRK11154 560 FSAPAAFDKLLNDDRKGRKNGRGFYLYGQKGKKSKKQVDESVYPLLGI-------TP---QSRLSANEIAERCVMLMLNE 629 (708)
T ss_pred CCCCHHHHHHHHCCCCcccCCceEEECCCCcccccccCCHHHHHHhcc-------CC---CCCCCHHHHHHHHHHHHHHH
Confidence 7788999999999999999999999998532 24567766554311 11 12477889999999999999
Q ss_pred HHHHhhcCcCCChhHHHHHHHHhcCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHcCCCCc
Q 008604 474 ACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAGKGATLS 550 (560)
Q Consensus 474 a~~~l~egv~~~~~diD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~~f~ 550 (560)
|++|++|||+.+|+|||.+|++|+|||+|+||||+|+|.+|++.+++.++.|++.+|++|.|+++|++|+++|++||
T Consensus 630 a~~ll~eGvva~~~dID~~~~~G~G~p~~~gGp~~~~D~~Gld~~~~~~~~l~~~~~~~~~p~~~l~~~~~~~~~f~ 706 (708)
T PRK11154 630 AVRCLDEGIIRSARDGDIGAVFGIGFPPFLGGPFRYMDSLGAGEVVAILERLAAQYGDRFTPCERLVEMAERGESFY 706 (708)
T ss_pred HHHHHHCCCcCCHHHHHHHHHhcCCCCCccCCHHHHHHHhCHHHHHHHHHHHHHhcCCccCCCHHHHHHHHcCCCCC
Confidence 99999999966999999999999999999999999999999999999999999999999999999999999999997
No 6
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=100.00 E-value=1.4e-79 Score=658.47 Aligned_cols=402 Identities=32% Similarity=0.522 Sum_probs=359.6
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 008604 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (560)
Q Consensus 146 ~~~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (560)
++++|+|||+|+||++||.+++++|++|++||+++++++++.+++++.++..+++|.+++++.++.+++++++++++++.
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l~ 83 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHALA 83 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHhC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccHHHHHhhccCCCcEeecccCCCCCCCCeEEEEeCCCCcH
Q 008604 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP 305 (560)
Q Consensus 226 ~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~~la~~~~~~~r~~g~hf~~P~~~~~lvEiv~g~~t~~ 305 (560)
+||+|||||+|++++|+.+|+++++.+++++||+||||+++++++++.+.+|+|++|+|||||++.++|+||++|+.|++
T Consensus 84 ~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~~~~~p~r~~G~HFf~Papv~~LvEvv~g~~Ts~ 163 (503)
T TIGR02279 84 DAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVAGLHFFNPAPVMALVEVVSGLATAA 163 (503)
T ss_pred CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCcccceEEEeccCccccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCceEEecCccccchhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHHHHhhhHHHH
Q 008604 306 QVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAI 383 (560)
Q Consensus 306 e~~~~~~~l~~~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~-~~~dID~a~~-~~G~~~GPf~~~D~~Gld~~~ 383 (560)
++++.+.++++.+||.|++++|+|||++||++.++++||+.++++|. ++++||.+++ ++|||||||+++|++|+|+++
T Consensus 164 e~~~~~~~l~~~lgk~pv~v~d~pGfi~Nrl~~~~~~EA~~l~e~g~a~~~~ID~al~~~~G~~mGPf~l~D~~Gldv~~ 243 (503)
T TIGR02279 164 EVAEQLYETALAWGKQPVHCHSTPGFIVNRVARPYYAEALRALEEQVAAPAVLDAALRDGAGFPMGPFELTDLIGHDVNF 243 (503)
T ss_pred HHHHHHHHHHHHcCCeeeEeCCCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999985 9999999999 899999999999999999999
Q ss_pred HHHHHHHHhC-CCC-CcccchHHHHHHCCCCccccCceeeeecCCCCC-CC-----------------------------
Q 008604 384 ATGMQFIENF-PER-TYKSMIIPIMQEDKRAGETTRKGFYLYDERRKA-SP----------------------------- 431 (560)
Q Consensus 384 ~~~~~l~~~~-~~~-~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~~~~-~~----------------------------- 431 (560)
++++.+++.+ ++. +.|++++++|+++|++|+|||+|||+|+++.+. .+
T Consensus 244 ~v~~~~~~~~~~~~~~~p~~~~~~~v~~G~lG~KtG~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (503)
T TIGR02279 244 AVTCSVFNAFWQDRRFLPSLVQQELVIAGRLGRKSGLGVYDYREEAEAVVPLEAVSDSFSPRVTVVGDIGAAAPLLARLE 323 (503)
T ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHCCCCccccCCEeeeCCCCCCCCCCccccccccccceeecccccchhhHHHHHH
Confidence 9999988764 554 446788999999999999999999999864321 11
Q ss_pred ----------------------------------------ChhHHHHHHHHhhccCc--cCCc-----------------
Q 008604 432 ----------------------------------------DPEVKKFIEKARSMSGV--AIDP----------------- 452 (560)
Q Consensus 432 ----------------------------------------~~~~~~~~~~~~~~~~~--~~~~----------------- 452 (560)
|+.+..++........+ .+..
T Consensus 324 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~vEv~~~~~Ts~e~~~~a~~~~~~~ 403 (503)
T TIGR02279 324 AAGIKVEKKSGRGVTQIGDALLALTDGRTAQARAIELARPNLVLFDLVLDYSTGKRIAIAAAAVNPDSATRKAIYYLQQA 403 (503)
T ss_pred hccccccccccccccccchhhhhhccccchhhhhhhcCCCCchHHHHHhhhcccCeEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 11111111111110111 0110
Q ss_pred --ccccCCH--HHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 008604 453 --KFAKLSE--KDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSL 528 (560)
Q Consensus 453 --~~~~~~~--~~i~~r~l~~~~~ea~~~l~egv~~~~~diD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~ 528 (560)
.+..+.+ .+|+||++.+++|||+++++|||+ +|+|||.+|++|+|||. |||+|+|.+|++.+++.++.|++.
T Consensus 404 Gk~pi~v~D~pGfi~nRil~~~~nEA~~ll~eGva-s~~dID~a~~~g~G~P~---GP~~~~D~~Gld~~~~~l~~l~~~ 479 (503)
T TIGR02279 404 GKKVLQIADYPGLLILRTVAMLANEAADAVLQGVA-SAQDIDTAMRLGVNYPY---GPLAWAAQLGWQRILRVLENLQHH 479 (503)
T ss_pred CCeEEEeCCcccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhCCCCCc---CHHHHHHHhCHHHHHHHHHHHHHH
Confidence 0112233 589999999999999999999999 99999999999999998 999999999999999999999999
Q ss_pred hCC-CCCCcHHHHHHHHcCCCCcC
Q 008604 529 YGE-FFKPCAFLAERAGKGATLSA 551 (560)
Q Consensus 529 ~~~-~~~p~~~l~~~~~~g~~f~~ 551 (560)
+++ +|.|+++|++|++.|.+|.+
T Consensus 480 ~~~~~~~p~~~L~~~v~~g~~~~~ 503 (503)
T TIGR02279 480 YGEERYRPSSLLRRRALLGSGYED 503 (503)
T ss_pred cCCCcCCcCHHHHHHHHcCCCcCC
Confidence 995 89999999999999998853
No 7
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=5.3e-78 Score=648.53 Aligned_cols=403 Identities=33% Similarity=0.547 Sum_probs=360.5
Q ss_pred ccceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc
Q 008604 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (560)
Q Consensus 145 ~~~~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 224 (560)
+++++|+|||+|.||++||.+++++|++|++||+++++++++.+++++.+++.+++|.+++++.++.+++++++++++++
T Consensus 5 ~~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~~ 84 (507)
T PRK08268 5 PSIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALADL 84 (507)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccHHHHHhhccCCCcEeecccCCCCCCCCeEEEEeCCCCc
Q 008604 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTS 304 (560)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~~la~~~~~~~r~~g~hf~~P~~~~~lvEiv~g~~t~ 304 (560)
.+||+|||||+|++++|+.+|++++..+++++||+|||||+++++++..+.+|+|++|+|||+|++.++|+||++|+.|+
T Consensus 85 ~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~~~~~p~r~~G~hff~Pa~v~~LvEvv~g~~Ts 164 (507)
T PRK08268 85 ADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAAALKHPERVAGLHFFNPVPLMKLVEVVSGLATD 164 (507)
T ss_pred CCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEeecCCcccCeeEEEeCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCceEEecCccccchhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHHHHhhhHHH
Q 008604 305 PQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVA 382 (560)
Q Consensus 305 ~e~~~~~~~l~~~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~-~~~dID~a~~-~~G~~~GPf~~~D~~Gld~~ 382 (560)
+++++.+.++++.+||.|++++|+|||++||++.++++|++.++++|. ++++||.+++ ++|||||||+++|.+|+|+.
T Consensus 165 ~~~~~~~~~l~~~lgk~pv~v~d~pGfi~Nrll~~~~~Ea~~l~~~g~~~~~~iD~al~~~~G~~mGPf~l~D~~Gldv~ 244 (507)
T PRK08268 165 PAVADALYALARAWGKTPVRAKDTPGFIVNRAARPYYTEALRVLEEGVADPATIDAILREAAGFRMGPFELMDLIGLDVN 244 (507)
T ss_pred HHHHHHHHHHHHHcCCceEEecCCCChHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhchHHH
Confidence 999999999999999999999999999999999999999999999985 9999999998 89999999999999999999
Q ss_pred HHHHHHHHHhC-CC-CCcccchHHHHHHCCCCccccCceeeeecCCCC-CCCChh--------------------HHHHH
Q 008604 383 IATGMQFIENF-PE-RTYKSMIIPIMQEDKRAGETTRKGFYLYDERRK-ASPDPE--------------------VKKFI 439 (560)
Q Consensus 383 ~~~~~~l~~~~-~~-~~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~~~-~~~~~~--------------------~~~~~ 439 (560)
+++.+.+.+.+ ++ ++.+++++++|+++|++|+|+|+|||+|+++++ ..++++ ..+++
T Consensus 245 ~~v~~~~~~~~~~~~~~~~~~~~~~lv~~g~lG~ksG~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (507)
T PRK08268 245 HAVMESVYRQFYQEPRFRPSLIQQELVAAGRLGRKSGQGFYRYADGAKQPPAEAAPPAALPPVWVSADVEGDLAALARLL 324 (507)
T ss_pred HHHHHHHHHHhcCCCcCCccHHHHHHHHCCCCccccCCeeeECCCCCCCCCCCccccccCccccccccccchhHHHHHHH
Confidence 99999888764 44 455788999999999999999999999975432 222222 22221
Q ss_pred HHHh----------------------------hccCccC-Cc------------ccccC---------------------
Q 008604 440 EKAR----------------------------SMSGVAI-DP------------KFAKL--------------------- 457 (560)
Q Consensus 440 ~~~~----------------------------~~~~~~~-~~------------~~~~~--------------------- 457 (560)
.... ......+ +. ...++
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~r~vg~Hf~~P~~~~~lvEvv~~~~Ts~e~~~~~~~~~~~~ 404 (507)
T PRK08268 325 ERLGATIETGEGPSADGLVLLAPTGGDTTTAAAREGLDAARVVLIDLLLDYAAAKRRTLMAAPATSPAARDAAHALFQQD 404 (507)
T ss_pred HhhccccccccccccccceEeeccCcchHHHHHHhcCCcccEEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 1000 0000000 00 00000
Q ss_pred ---------CHHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 008604 458 ---------SEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSL 528 (560)
Q Consensus 458 ---------~~~~i~~r~l~~~~~ea~~~l~egv~~~~~diD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~ 528 (560)
+..+|.||++.+++|||++|++|||+ +|+|||.+|++|+|||+ |||+|+|.+|++.++++++.+++.
T Consensus 405 gk~pi~v~d~~Gfi~nRll~~~~nEa~~ll~eGva-s~~dID~a~~~g~G~p~---GP~~~~D~~Gld~~~~~~~~l~~~ 480 (507)
T PRK08268 405 GKAVSVIRDSPGFVAQRTVAMIVNEAADIAQQGIA-SPADIDLAMRLGLNYPL---GPLAWGDRLGAARILRVLENLQAL 480 (507)
T ss_pred CCeeEEeCCCccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhcCCCCc---CHHHHHHHhCHHHHHHHHHHHHHH
Confidence 34689999999999999999999998 99999999999999999 999999999999999999999999
Q ss_pred hCC-CCCCcHHHHHHHHcCCCCcC
Q 008604 529 YGE-FFKPCAFLAERAGKGATLSA 551 (560)
Q Consensus 529 ~~~-~~~p~~~l~~~~~~g~~f~~ 551 (560)
+|+ +|.|+++|++|++.|..||.
T Consensus 481 ~g~~~~~p~~ll~~~v~~G~~~~~ 504 (507)
T PRK08268 481 YGDPRYRPSPWLRRRAALGLSLRS 504 (507)
T ss_pred hCCCcCCcCHHHHHHHHcCCCcCC
Confidence 995 99999999999999999986
No 8
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=100.00 E-value=3.7e-70 Score=541.65 Aligned_cols=280 Identities=38% Similarity=0.679 Sum_probs=271.0
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 008604 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (560)
Q Consensus 146 ~~~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (560)
.|++|+|||+|+||++||..++..|++|+++|++++.+++++..+.+.+++++++|++++++.+..+++|++++++.+++
T Consensus 2 ~i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~l~ 81 (307)
T COG1250 2 EIKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAALK 81 (307)
T ss_pred CccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhHhc
Confidence 47999999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccHHHHHhhccCCCcEeecccCCCCCCCCeEEEEeCCCCcH
Q 008604 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP 305 (560)
Q Consensus 226 ~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~~la~~~~~~~r~~g~hf~~P~~~~~lvEiv~g~~t~~ 305 (560)
+||+|||+|+||+++|+++|+++++++++++|++|||||+|++++++.+.+|+||+|+|||||++.|+||||++|..|++
T Consensus 82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~~~rper~iG~HFfNP~~~m~LVEvI~g~~T~~ 161 (307)
T COG1250 82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGEKTSD 161 (307)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHHhCCchhEEEEeccCCCCcceeEEEecCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCceEEecCccccchhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHHHHhhhHHHH
Q 008604 306 QVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAI 383 (560)
Q Consensus 306 e~~~~~~~l~~~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~-~~~dID~a~~-~~G~~~GPf~~~D~~Gld~~~ 383 (560)
++++.+.+|++.+||+|++++|+||||+||++.++++||++++.+|+ ++++||.+|+ ++|||||||+++|++|+|+++
T Consensus 162 e~~~~~~~~~~~igK~~vv~~D~pGFi~NRil~~~~~eA~~l~~eGva~~e~ID~~~~~~~G~pmGpf~l~D~~GlD~~~ 241 (307)
T COG1250 162 ETVERVVEFAKKIGKTPVVVKDVPGFIVNRLLAALLNEAIRLLEEGVATPEEIDAAMRQGLGLPMGPFELADLIGLDVML 241 (307)
T ss_pred HHHHHHHHHHHHcCCCCEeecCCCceehHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCCccHHHHHHHHhHHHHH
Confidence 99999999999999999888999999999999999999999999996 9999999999 899999999999999999999
Q ss_pred HHHHHHHHhCCCC-Cc-ccchHHHHHHCCCCccccCceeeeecC
Q 008604 384 ATGMQFIENFPER-TY-KSMIIPIMQEDKRAGETTRKGFYLYDE 425 (560)
Q Consensus 384 ~~~~~l~~~~~~~-~~-~~~~l~~~v~~G~~G~k~g~GfY~y~~ 425 (560)
++++.+++.++++ .+ +++++++|++.|++|+|||+|||+|.+
T Consensus 242 ~i~~~~~~~~~~~~~~~~~~~~~~~v~~g~lG~Ksg~GfY~y~~ 285 (307)
T COG1250 242 HIMKVLNETLGDDPYYRPPPLLRKLVEAGRLGRKSGKGFYDYRG 285 (307)
T ss_pred HHHHHHHHhcCCCccccccHHHHHHHhcccccccCCCcceeccc
Confidence 9999999888833 33 678999999999999999999999975
No 9
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=2.7e-69 Score=493.66 Aligned_cols=280 Identities=36% Similarity=0.574 Sum_probs=265.8
Q ss_pred ccceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHH-----HHhhhccccccc
Q 008604 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEK-----FEKTISLLTGVL 219 (560)
Q Consensus 145 ~~~~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~-----~~~~~~~i~~~~ 219 (560)
..++.|+|||+|.||++||+..+.+|++|+++|.|+.++.++.+.|.+.+.+..+++..+... ++..+++|..++
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~t 88 (298)
T KOG2304|consen 9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTST 88 (298)
T ss_pred ccccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcC
Confidence 458899999999999999999999999999999999999999999999999888887765333 477889999999
Q ss_pred Ccc-cccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccHHHHHhhccCCCcEeecccCCCCCCCCeEEEE
Q 008604 220 DYE-SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIV 298 (560)
Q Consensus 220 ~~~-~~~~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~~la~~~~~~~r~~g~hf~~P~~~~~lvEiv 298 (560)
+.+ .+.++|+|||++.|++++|+.+|++++..+++++|++|||||+.+++++..+.+|.||.|+|||||+..|+||||+
T Consensus 89 nv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~~~~~~srf~GlHFfNPvPvMKLvEVi 168 (298)
T KOG2304|consen 89 NVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIASATQRPSRFAGLHFFNPVPVMKLVEVI 168 (298)
T ss_pred CHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHhhccChhhhceeeccCCchhHHHhhhh
Confidence 885 5788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCcHHHHHHHHHHHHhcCCceEEecCccccchhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHHHH
Q 008604 299 RTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADL 376 (560)
Q Consensus 299 ~g~~t~~e~~~~~~~l~~~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~-~~~dID~a~~-~~G~~~GPf~~~D~ 376 (560)
+++.|+++++.....|.+.+||+++-++|.||||+||++.+|++||+++++.|. +.+|||.+|+ |.|+||||||++|+
T Consensus 169 r~~~TS~eTf~~l~~f~k~~gKttVackDtpGFIVNRlLiPyl~ea~r~yerGdAskeDIDtaMklGagyPMGPfEL~Dy 248 (298)
T KOG2304|consen 169 RTDDTSDETFNALVDFGKAVGKTTVACKDTPGFIVNRLLIPYLMEAIRMYERGDASKEDIDTAMKLGAGYPMGPFELADY 248 (298)
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCceeecCCCchhhhHHHHHHHHHHHHHHHhcCCcHhhHHHHHhccCCCCCChHHHHHH
Confidence 999999999999999999999999999999999999999999999999999997 9999999999 99999999999999
Q ss_pred hhhHHHHHHHHHHHHhCCCC--CcccchHHHHHHCCCCccccCceeeeec
Q 008604 377 VGFGVAIATGMQFIENFPER--TYKSMIIPIMQEDKRAGETTRKGFYLYD 424 (560)
Q Consensus 377 ~Gld~~~~~~~~l~~~~~~~--~~~~~~l~~~v~~G~~G~k~g~GfY~y~ 424 (560)
+|||++..+|+.|++.++++ +.|+|++.++|++|++|+|+|+|||+|.
T Consensus 249 vGLDt~kfvmdgwhe~~pe~~~f~psPll~klVaegklGrKtg~GfY~Yk 298 (298)
T KOG2304|consen 249 VGLDTCKFVMDGWHEGYPEDSLFAPSPLLDKLVAEGKLGRKTGEGFYKYK 298 (298)
T ss_pred hhHHHHHHHHHHHHhcCCcccccCCChHHHHHHhccccccccCccceecC
Confidence 99999999999999998653 4589999999999999999999999983
No 10
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=1.1e-66 Score=512.26 Aligned_cols=378 Identities=42% Similarity=0.670 Sum_probs=347.8
Q ss_pred chHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCCEEEEeccCC
Q 008604 158 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 237 (560)
Q Consensus 158 mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~e~ 237 (560)
||++||..+..+|++|+++|.|...++++..++...+.+.+.+++++..+....+.++..+.|+..+++||+|||+|+||
T Consensus 1 MG~gia~~~~~~~i~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~~~~~~~~L~~~~Dy~~~~~~dmvieav~ed 80 (380)
T KOG1683|consen 1 MGAGIAIVFILAGIRTVLVDANVALLARGILQLAAHLNSEVKRGRLSGLEREKTKSNLVETLDYTGFANADMVIEAVFED 80 (380)
T ss_pred CcchHHHHHHHcCCcEEEEeccHHHHHHhHHHHHHhhhHHHhhccccccchhhhhhhcccccccccccccceeccchhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhcCCCceeeccCCcccHHHHHhhccCCCcEeecccCCCCCCCCeEEEEeCCCCcHHHHHHHHHHHHh
Q 008604 238 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKK 317 (560)
Q Consensus 238 ~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~~la~~~~~~~r~~g~hf~~P~~~~~lvEiv~g~~t~~e~~~~~~~l~~~ 317 (560)
+++|++++.+|++.++++||++||||+++++++++.+..|++++|+|||+|++.|+|+||+.+.+||..++..+.+....
T Consensus 81 l~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~m~LlEii~~~~tS~~~iA~Ain~~~~ 160 (380)
T KOG1683|consen 81 LELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHWMQLLEIILALYTSKLTIATAINGGSP 160 (380)
T ss_pred HHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHHHHHHHHHHhcCCCchHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEecCccccchhchHHHHHHHHHHHHHc-CCCHHHHHHHHHhcCCCccHHHHHHHhhhHHHHHHHHHHHHhCCCC
Q 008604 318 IKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVER-GTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPER 396 (560)
Q Consensus 318 lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~-G~~~~dID~a~~~~G~~~GPf~~~D~~Gld~~~~~~~~l~~~~~~~ 396 (560)
.|+.|++|++++||.+||++.+|++++.++..+ |++|.++|.....||||+|||.+.|..|+|+..++...+...++++
T Consensus 161 ~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fGf~~g~~~L~d~~gfdv~eal~~gl~~~~~~r 240 (380)
T KOG1683|consen 161 AGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFGFRVGERALADGVGFDVAEALAVGLGDEIGPR 240 (380)
T ss_pred cCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcCccccHHHHhhccCccHHHHHhhccchhccch
Confidence 999999999999999999999999999998877 9999999999999999999999999999999887766655544433
Q ss_pred CcccchHHHHHHCCCCccccCceeeeecCCCCCCCCh-hHHHHHHHHhhccCccCCcccccCCHHHHHHHHHHHHHHHHH
Q 008604 397 TYKSMIIPIMQEDKRAGETTRKGFYLYDERRKASPDP-EVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEAC 475 (560)
Q Consensus 397 ~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~l~~~~~ea~ 475 (560)
+.++|++.|+.|+|||+|||.|+++.+...++ +....+.... ....+...++++++++++.+++|||+
T Consensus 241 -----~~eel~~~~~~g~kT~kg~y~y~~~l~k~~~~~~~~~~~r~l~------~~~~~r~~~~ed~v~~~~~p~VnEal 309 (380)
T KOG1683|consen 241 -----IEEELLEKGRAGIKTGKGIYPYARGLTKKMKRDEMEALLRRLS------LTPNPRVADDEDFVEFLLSPFVNEAL 309 (380)
T ss_pred -----hHHHHHHHHhhhhhccCcccccccccccCCChhhHHHHHHHhc------cCCCcccCCHHHHHHHHhhHHHHHHH
Confidence 78899999999999999999999775444444 3333333322 11122356889999999999999999
Q ss_pred HHhhcCcCCChhHHHHHHHHhcCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHcCCCCcC
Q 008604 476 RVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFLAERAGKGATLSA 551 (560)
Q Consensus 476 ~~l~egv~~~~~diD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~g~~f~~ 551 (560)
+|++|||..+|+++|++.++|+|||+++||||+|+|..|++++++.|+.|+. |+|+.+|++++++|+-||.
T Consensus 310 ~~l~EGi~~~~~~~Di~~v~G~gfp~~~GGp~~~~d~~G~~ki~~~l~~~~~-----f~P~~~l~~~a~~~~~~~~ 380 (380)
T KOG1683|consen 310 RCLLEGLKASPSDGDIASVFGLGFPPFRGGPMRFVDLYGADKIVSRLQKWSS-----FEPCQLLKDHAKSGKKFYN 380 (380)
T ss_pred HHHHHHHhcCccccceeeeeccCCCCcCCCceeeeeccChHHHHHHHHHHhc-----CCHHHHHHHHHhhhccccC
Confidence 9999999999999999999999999999999999999999999999999997 9999999999999999984
No 11
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=2.9e-63 Score=499.54 Aligned_cols=278 Identities=33% Similarity=0.550 Sum_probs=269.8
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 008604 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (560)
Q Consensus 146 ~~~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (560)
++++|+|||+|.||.+||..++.+|++|++||++++.++.+.+++++.+++.+++|.+++.+.++.++++++++++++++
T Consensus 4 ~~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 83 (286)
T PRK07819 4 AIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGDFA 83 (286)
T ss_pred CccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHHhC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhc-CCCceeeccCCcccHHHHHhhccCCCcEeecccCCCCCCCCeEEEEeCCCCc
Q 008604 226 DVDMVIEAIIENVSLKQQIFADLEKYC-PPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTS 304 (560)
Q Consensus 226 ~aDlVIeav~e~~~~k~~~~~~l~~~~-~~~~ii~sntSsl~i~~la~~~~~~~r~~g~hf~~P~~~~~lvEiv~g~~t~ 304 (560)
+||+|||||||++++|+++|+++++.+ ++++||+||||++++++++..+.+|+|++|+|||+|++.++++||+++..|+
T Consensus 84 ~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvElv~~~~T~ 163 (286)
T PRK07819 84 DRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVELVPTLVTS 163 (286)
T ss_pred CCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEEEeCCCCCC
Confidence 999999999999999999999999999 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-hcCCceEEecCccccchhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHHHHhhhHH
Q 008604 305 PQVIVDLLDIGK-KIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGV 381 (560)
Q Consensus 305 ~e~~~~~~~l~~-~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~-~~~dID~a~~-~~G~~~GPf~~~D~~Gld~ 381 (560)
+++++.+..++. .+||.|++++|.|||++||++.++++|+++++++|+ +++|||.+++ ++|||+|||+++|.+|+|+
T Consensus 164 ~~~~~~~~~~~~~~lgk~pv~v~d~pGfi~nRi~~~~~~Ea~~ll~eGv~~~~dID~~~~~g~G~p~Gpf~~~D~~Gld~ 243 (286)
T PRK07819 164 EATVARAEEFASDVLGKQVVRAQDRSGFVVNALLVPYLLSAIRMVESGFATAEDIDKAMVLGCAHPMGPLRLSDLVGLDT 243 (286)
T ss_pred HHHHHHHHHHHHHhCCCCceEecCCCChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhccHH
Confidence 999999999988 599999999999999999999999999999999997 9999999998 9999999999999999999
Q ss_pred HHHHHHHHHHhCCCCC-cccchHHHHHHCCCCccccCceeeee
Q 008604 382 AIATGMQFIENFPERT-YKSMIIPIMQEDKRAGETTRKGFYLY 423 (560)
Q Consensus 382 ~~~~~~~l~~~~~~~~-~~~~~l~~~v~~G~~G~k~g~GfY~y 423 (560)
+.++++.+++.+++++ .|++++++|+++|++|+|+|+|||+|
T Consensus 244 ~~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~k~g~GfY~y 286 (286)
T PRK07819 244 VKAIADSMYEEFKEPLYAPPPLLLRMVEAGLLGKKSGRGFYTY 286 (286)
T ss_pred HHHHHHHHHHHcCCCCCCCCHHHHHHHHCCCCcccCCCEeccC
Confidence 9999999999998744 58899999999999999999999998
No 12
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.9e-58 Score=466.69 Aligned_cols=279 Identities=27% Similarity=0.445 Sum_probs=265.4
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHH-HHhhhcccccccCcc-c
Q 008604 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEK-FEKTISLLTGVLDYE-S 223 (560)
Q Consensus 146 ~~~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~-~~~~~~~i~~~~~~~-~ 223 (560)
++++|+|||+|.||.+||..++.+|++|++||++++.++++.+.+++.+....+.+.++.++ .+...++++.+++++ .
T Consensus 2 ~~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a 81 (287)
T PRK08293 2 DIKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEA 81 (287)
T ss_pred CccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHH
Confidence 36899999999999999999999999999999999999999999989898999998888777 777888999888885 5
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccHHHHHhhccCCCcEeecccCCCCCCCCeEEEEeCCCC
Q 008604 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQT 303 (560)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~~la~~~~~~~r~~g~hf~~P~~~~~lvEiv~g~~t 303 (560)
+++||+||||+||+.++|+.+++++.+.+++++||+||||+++++++++.+.+|+||+|+|||+|++.++++|+++++.|
T Consensus 82 ~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~~~~~~~r~vg~Hf~~p~~~~~lvevv~~~~t 161 (287)
T PRK08293 82 VKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAEATGRPEKFLALHFANEIWKNNTAEIMGHPGT 161 (287)
T ss_pred hcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHhhcCCcccEEEEcCCCCCCcCCeEEEeCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCceEEec-CccccchhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHHHHhhhH
Q 008604 304 SPQVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFG 380 (560)
Q Consensus 304 ~~e~~~~~~~l~~~lGk~~i~v~-d~~G~i~nri~~~~~~ea~~l~~~G~-~~~dID~a~~-~~G~~~GPf~~~D~~Gld 380 (560)
++++++.+..+++.+|+.|++++ |.|||++||++.++++||++++++|+ +++|||.+++ ++|+|+|||+++|.+|+|
T Consensus 162 ~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~nRi~~~~~~ea~~l~~~g~a~~~~iD~a~~~~~g~~~Gp~~~~D~~Gld 241 (287)
T PRK08293 162 DPEVFDTVVAFAKAIGMVPIVLKKEQPGYILNSLLVPFLSAALALWAKGVADPETIDKTWMIATGAPMGPFGILDIVGLD 241 (287)
T ss_pred CHHHHHHHHHHHHHcCCeEEEecCCCCCHhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCcCHHHHHHHhchH
Confidence 99999999999999999999995 99999999999999999999999997 9999999998 999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCc--ccchHHHHHHCCCCccccCceeeeec
Q 008604 381 VAIATGMQFIENFPERTY--KSMIIPIMQEDKRAGETTRKGFYLYD 424 (560)
Q Consensus 381 ~~~~~~~~l~~~~~~~~~--~~~~l~~~v~~G~~G~k~g~GfY~y~ 424 (560)
++.++++++++.++++++ +++++++|+++|++|+|+|+|||+|+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~g~~G~k~g~Gfy~y~ 287 (287)
T PRK08293 242 TAYNITSNWAEATDDENAKKAAALLKEYIDKGKLGVATGEGFYNYP 287 (287)
T ss_pred HHHHHHHHHHHHhCCcccccchHHHHHHHHCCCCcccCCCccccCc
Confidence 999999999999988753 78999999999999999999999994
No 13
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=6.5e-58 Score=463.31 Aligned_cols=281 Identities=29% Similarity=0.517 Sum_probs=268.8
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 008604 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (560)
Q Consensus 147 ~~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (560)
+++|+|||+|.||.+||..++++|++|++||++++.++++.+++...+...++.|.+++.+.++.+++++.++++ +.++
T Consensus 1 ~~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 80 (288)
T PRK09260 1 IEKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVA 80 (288)
T ss_pred CcEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhc
Confidence 468999999999999999999999999999999999999988888888888889999998888899999988888 5689
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccHHHHHhhccCCCcEeecccCCCCCCCCeEEEEeCCCCcH
Q 008604 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP 305 (560)
Q Consensus 226 ~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~~la~~~~~~~r~~g~hf~~P~~~~~lvEiv~g~~t~~ 305 (560)
+||+||+|+||+.++|+.+++++.+.+++++||++||||++++++++.+.+|+|++|+|||+|++.++|+|+++|+.|++
T Consensus 81 ~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~~Pv~~~~Lve~v~g~~t~~ 160 (288)
T PRK09260 81 DADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFFNPVHKMKLVELIRGLETSD 160 (288)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCceEEecCccccchhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHHHHhhhHHHH
Q 008604 306 QVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAI 383 (560)
Q Consensus 306 e~~~~~~~l~~~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~-~~~dID~a~~-~~G~~~GPf~~~D~~Gld~~~ 383 (560)
++++.+.++++.+|+.|++++|.|||++||++.++++||++++++|+ +++|||.+++ ++|||+|||+++|.+|+|++.
T Consensus 161 ~~~~~~~~~l~~lg~~~v~v~d~~Gf~~nRl~~~~~~ea~~~~~~gv~~~~~iD~~~~~g~g~p~Gp~~~~D~~Gl~~~~ 240 (288)
T PRK09260 161 ETVQVAKEVAEQMGKETVVVNEFPGFVTSRISALVGNEAFYMLQEGVATAEDIDKAIRLGLNFPMGPLELGDLVGLDTRL 240 (288)
T ss_pred HHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhHHHHH
Confidence 99999999999999999999999999999999999999999999997 9999999999 999999999999999999999
Q ss_pred HHHHHHHHhCCCCCcccchHHHHHHCCCCccccCceeeeecCCC
Q 008604 384 ATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLYDERR 427 (560)
Q Consensus 384 ~~~~~l~~~~~~~~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~~ 427 (560)
++++.+++.+++++.|++++.+|+++|++|+|+|+|||+|++++
T Consensus 241 ~~~~~l~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~~~~ 284 (288)
T PRK09260 241 NNLKYLHETLGEKYRPAPLLEKYVKAGRLGRKTGRGVYDYTNRE 284 (288)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHCCCCccccCCEEEECCCCC
Confidence 99999999998888899999999999999999999999998654
No 14
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=2.9e-57 Score=459.24 Aligned_cols=278 Identities=32% Similarity=0.553 Sum_probs=264.2
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHH---HHHHHHHcCCCCHHHHHhhhcccccccCcc
Q 008604 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRA---NLQSRVKKGKMTQEKFEKTISLLTGVLDYE 222 (560)
Q Consensus 146 ~~~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~---~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (560)
++++|+|||+|.||.+||..++++|++|++||++++.++.+.+++.+ .+...++.|.+++++.++.++++..+++++
T Consensus 2 ~i~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 81 (291)
T PRK06035 2 DIKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSYE 81 (291)
T ss_pred CCcEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCHH
Confidence 36899999999999999999999999999999999999988887766 366778889888888888899998888888
Q ss_pred cccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccHHHHHhhccCCCcEeecccCCCCCCCCeEEEEeCCC
Q 008604 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQ 302 (560)
Q Consensus 223 ~~~~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~~la~~~~~~~r~~g~hf~~P~~~~~lvEiv~g~~ 302 (560)
.+++||+||||+||+.++|+.+++++++.+++++||+||||+++++++++.+.+|+|++|+|||+|++.++++|+++|+.
T Consensus 82 ~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~~~~~~~r~ig~hf~~P~~~~~~vEv~~g~~ 161 (291)
T PRK06035 82 SLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIATALERKDRFIGMHWFNPAPVMKLIEVVRAAL 161 (291)
T ss_pred HhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCccEEEeCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHhcCCceEEecCccccchhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHHHHhhhH
Q 008604 303 TSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFG 380 (560)
Q Consensus 303 t~~e~~~~~~~l~~~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~-~~~dID~a~~-~~G~~~GPf~~~D~~Gld 380 (560)
|++++++.+.++++.+|+.|++++|.|||++||++.++++||++++++|+ +++|||.+++ ++|+|+|||+++|.+|+|
T Consensus 162 T~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~nRl~~~~~~ea~~~~~~g~a~~~~iD~~~~~~~g~~~Gp~~~~D~~Gl~ 241 (291)
T PRK06035 162 TSEETFNTTVELSKKIGKIPIEVADVPGFFTTRFIEGWLLEAIRSFEIGIATIKDIDEMCKLAFGFPMGPFELMDIIGID 241 (291)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEeCCCCCeeHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhcCCCccCHHHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999999997 9999999998 999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCC-cccchHHHHHHCCCCcccc-----Cceeeee
Q 008604 381 VAIATGMQFIENFPERT-YKSMIIPIMQEDKRAGETT-----RKGFYLY 423 (560)
Q Consensus 381 ~~~~~~~~l~~~~~~~~-~~~~~l~~~v~~G~~G~k~-----g~GfY~y 423 (560)
++.++++.+++.+++++ .|+++|++|+++|++|+|| |+|||+|
T Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~l~~~v~~g~~G~k~~~~~~g~Gfy~y 290 (291)
T PRK06035 242 TVYHIAEYLYEETGDPQFIPPNSLKQMVLNGYVGDKKVKYGSKGGWFDY 290 (291)
T ss_pred HHHHHHHHHHHHcCCCcCCccHHHHHHHHCCCCcCCCCCCCCCceeeec
Confidence 99999999999998865 4778999999999999999 9999998
No 15
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=3.2e-57 Score=457.09 Aligned_cols=277 Identities=35% Similarity=0.613 Sum_probs=267.4
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 008604 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (560)
Q Consensus 147 ~~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (560)
+++|+|||+|.||.+||..++++|++|+++|++++.++++.+++++.++...+.|.++.++.++.+.+++++++++.+++
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 82 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDDLKD 82 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhcc
Confidence 67999999999999999999999999999999999999999999999999999999998888888899998888888999
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccHHHHHhhccCCCcEeecccCCCCCCCCeEEEEeCCCCcHH
Q 008604 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQ 306 (560)
Q Consensus 227 aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~~la~~~~~~~r~~g~hf~~P~~~~~lvEiv~g~~t~~e 306 (560)
||+||||+||++++|+++++++++++++++||+||||+++++++++.+.+|+|++|+||++|++.++++|+++|+.|+++
T Consensus 83 aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~r~ig~h~~~P~~~~~~vev~~g~~t~~e 162 (282)
T PRK05808 83 ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAATKRPDKVIGMHFFNPVPVMKLVEIIRGLATSDA 162 (282)
T ss_pred CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCcceEEeeccCCcccCccEEEeCCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCceEEecCccccchhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHHHHhhhHHHHH
Q 008604 307 VIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIA 384 (560)
Q Consensus 307 ~~~~~~~l~~~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~-~~~dID~a~~-~~G~~~GPf~~~D~~Gld~~~~ 384 (560)
+++.+..++..+|+.|++++|.|||++||++.++++|+++++++|+ +++|||.+++ |+|||+|||+++|.+|+|++.+
T Consensus 163 ~~~~~~~l~~~lGk~pv~~~d~~g~i~~Ri~~~~~~ea~~~~~~gv~~~~diD~~~~~g~g~p~Gp~~~~D~~Gl~~~~~ 242 (282)
T PRK05808 163 THEAVEALAKKIGKTPVEVKNAPGFVVNRILIPMINEAIFVLAEGVATAEDIDEGMKLGCNHPIGPLALADLIGLDTCLA 242 (282)
T ss_pred HHHHHHHHHHHcCCeeEEecCccChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhhHHHHH
Confidence 9999999999999999999999999999999999999999999997 9999999999 9999999999999999999999
Q ss_pred HHHHHHHhCCCCC-cccchHHHHHHCCCCccccCceeeee
Q 008604 385 TGMQFIENFPERT-YKSMIIPIMQEDKRAGETTRKGFYLY 423 (560)
Q Consensus 385 ~~~~l~~~~~~~~-~~~~~l~~~v~~G~~G~k~g~GfY~y 423 (560)
+++.+++.+++++ .|++++++|+++|++|+|+|+|||+|
T Consensus 243 ~~~~l~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y 282 (282)
T PRK05808 243 IMEVLYEGFGDSKYRPCPLLRKMVAAGWLGRKTGRGFYDY 282 (282)
T ss_pred HHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCcccCC
Confidence 9999999998744 57889999999999999999999998
No 16
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=100.00 E-value=1.3e-56 Score=455.53 Aligned_cols=282 Identities=31% Similarity=0.554 Sum_probs=270.3
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 008604 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (560)
Q Consensus 146 ~~~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (560)
++++|+|||+|.||.+||..++++|++|++||++++.++.+.+++++.++.+++.|.+++++.++.++++.++++++.++
T Consensus 3 ~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 82 (295)
T PLN02545 3 EIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELR 82 (295)
T ss_pred CcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhC
Confidence 47899999999999999999999999999999999999999999999999999999999999888888888888888899
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccHHHHHhhccCCCcEeecccCCCCCCCCeEEEEeCCCCcH
Q 008604 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP 305 (560)
Q Consensus 226 ~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~~la~~~~~~~r~~g~hf~~P~~~~~lvEiv~g~~t~~ 305 (560)
+||+|||||+|++++|+.+|+++.+.+++++||+||||+++++++++.+.++.|++|+||++|++.++++|+++++.|++
T Consensus 83 ~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~~lveiv~g~~t~~ 162 (295)
T PLN02545 83 DADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIMKLVEIIRGADTSD 162 (295)
T ss_pred CCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCceEEecCccccchhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHHHHhhhHHHH
Q 008604 306 QVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAI 383 (560)
Q Consensus 306 e~~~~~~~l~~~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~-~~~dID~a~~-~~G~~~GPf~~~D~~Gld~~~ 383 (560)
++++.+..++..+|+.+++++|.|||++||++.++++|+++++++|+ +++|||.+++ ++|||+|||+++|.+|+|++.
T Consensus 163 e~~~~~~~ll~~lG~~~~~~~d~~g~i~nri~~~~~~ea~~~~~~gv~~~~~iD~~~~~g~g~~~Gp~~~~D~~Gl~~~~ 242 (295)
T PLN02545 163 EVFDATKALAERFGKTVVCSQDYPGFIVNRILMPMINEAFYALYTGVASKEDIDTGMKLGTNHPMGPLHLADFIGLDTCL 242 (295)
T ss_pred HHHHHHHHHHHHcCCeeEEecCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCCCHHHHHHHhchHHHH
Confidence 99999999999999999999999999999999999999999999997 9999999999 999999999999999999999
Q ss_pred HHHHHHHHhCCCC-CcccchHHHHHHCCCCccccCceeeeecCCC
Q 008604 384 ATGMQFIENFPER-TYKSMIIPIMQEDKRAGETTRKGFYLYDERR 427 (560)
Q Consensus 384 ~~~~~l~~~~~~~-~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~~ 427 (560)
++++.+++.++++ +.|++++.+|+++|++|+|+|+|||+|++++
T Consensus 243 ~~~~~l~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~~~~ 287 (295)
T PLN02545 243 SIMKVLHEGLGDSKYRPCPLLVQYVDAGRLGRKSGRGVYHYDGKK 287 (295)
T ss_pred HHHHHHHHHcCCCcCCCCHHHHHHHHCCCCcccCCCeeeECCCCC
Confidence 9999999999875 4578999999999999999999999998654
No 17
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=2.9e-56 Score=452.36 Aligned_cols=281 Identities=32% Similarity=0.528 Sum_probs=268.3
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 008604 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (560)
Q Consensus 146 ~~~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (560)
++++|+|||+|.||.+||..++++|++|++||++++.++.+.+++.+.+...++.|.++..+.++.+.+++++++++.++
T Consensus 3 ~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 82 (292)
T PRK07530 3 AIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLEDLA 82 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHHhc
Confidence 47899999999999999999999999999999999999999999999888889999999888888889999888888899
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccHHHHHhhccCCCcEeecccCCCCCCCCeEEEEeCCCCcH
Q 008604 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP 305 (560)
Q Consensus 226 ~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~~la~~~~~~~r~~g~hf~~P~~~~~lvEiv~g~~t~~ 305 (560)
+||+||+|+||+.++|+.+++++.+.+++++||+||||+++++++++.+.+|+|++|+|||+|++.++++|+++|..|++
T Consensus 83 ~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~~~~~~~r~~g~h~~~p~~~~~~vei~~g~~t~~ 162 (292)
T PRK07530 83 DCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLASATDRPERFIGIHFMNPVPVMKLVELIRGIATDE 162 (292)
T ss_pred CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEeeccCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999998999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCceEEecCccccchhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHHHHhhhHHHH
Q 008604 306 QVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAI 383 (560)
Q Consensus 306 e~~~~~~~l~~~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~-~~~dID~a~~-~~G~~~GPf~~~D~~Gld~~~ 383 (560)
++++.+.+++..+|+.+++++|.|||++||++.++++|+++++++|+ ++++||.+++ ++|||+|||+++|.+|+|++.
T Consensus 163 ~~~~~~~~~~~~~gk~~v~~~d~pg~i~nRl~~~~~~ea~~~~~~g~~~~~~iD~~~~~g~g~~~GP~~~~D~~Gl~~~~ 242 (292)
T PRK07530 163 ATFEAAKEFVTKLGKTITVAEDFPAFIVNRILLPMINEAIYTLYEGVGSVEAIDTAMKLGANHPMGPLELADFIGLDTCL 242 (292)
T ss_pred HHHHHHHHHHHHcCCeEEEecCcCChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999998 9999999999 999999999999999999999
Q ss_pred HHHHHHHHhCCCC-CcccchHHHHHHCCCCccccCceeeeecCC
Q 008604 384 ATGMQFIENFPER-TYKSMIIPIMQEDKRAGETTRKGFYLYDER 426 (560)
Q Consensus 384 ~~~~~l~~~~~~~-~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~ 426 (560)
++++.+++.++++ +.|++++.+|+++|++|+|+|+|||+|+++
T Consensus 243 ~~~~~~~~~~~~~~~~p~~~l~~~v~~g~~G~k~g~Gfy~y~~~ 286 (292)
T PRK07530 243 SIMQVLHDGLADSKYRPCPLLVKYVEAGWLGRKTGRGFYDYRGE 286 (292)
T ss_pred HHHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCEeeeCCCC
Confidence 9999999998874 457889999999999999999999999654
No 18
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=5.5e-56 Score=450.94 Aligned_cols=268 Identities=26% Similarity=0.393 Sum_probs=255.6
Q ss_pred chHHHHHHHHhCCCcEEEEeCCHH-------HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC--c-ccccCC
Q 008604 158 MGSGIATALILSNYPVILKEVNEK-------FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD--Y-ESFKDV 227 (560)
Q Consensus 158 mG~~iA~~l~~~G~~V~l~d~~~~-------~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--~-~~~~~a 227 (560)
||++||..++.+|++|+++|++++ .++++.+++.+.++.++++|.+++++.++.+++|+++++ . +++++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 899999999999999999999995 467799999999999999999999999999999998764 3 568999
Q ss_pred CEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccHHHHHhhccCCCcEeecccCCCCCCCCeEEEEeCCCCcHHH
Q 008604 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQV 307 (560)
Q Consensus 228 DlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~~la~~~~~~~r~~g~hf~~P~~~~~lvEiv~g~~t~~e~ 307 (560)
|+|||||+|++++|+.+|+++++.+++++||+||||+++++++++.+.+|+|++|+|||||++.+++|||++|+.|++++
T Consensus 81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lvEVv~g~~t~~e~ 160 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSDATDPAV 160 (314)
T ss_pred CEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHhhcCCcccEEEEecCCccccCceEEEeCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCceEEecCccccchhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCC---ccHHHHHHHhhhHHH
Q 008604 308 IVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMP---MGPFRLADLVGFGVA 382 (560)
Q Consensus 308 ~~~~~~l~~~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~-~~~dID~a~~-~~G~~---~GPf~~~D~~Gld~~ 382 (560)
++.+.+++..+||.|++++|.|||++||++.++++|++.++++|+ ++++||.+++ ++||| +|||+++|.+|+|++
T Consensus 161 ~~~~~~ll~~lGk~~v~v~d~~Gfi~nri~~~~l~EAl~l~e~g~~~~e~iD~a~~~g~G~~~~~~Gpf~~~D~~Gld~~ 240 (314)
T PRK08269 161 VDRLAALLERIGKVPVVCGPSPGYIVPRIQALAMNEAARMVEEGVASAEDIDKAIRTGFGLRFAVLGLLEFIDWGGCDIL 240 (314)
T ss_pred HHHHHHHHHHcCCcEEEecCCCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccCcCHHHHHHhhhHHHH
Confidence 999999999999999999999999999999999999999999885 9999999999 99999 699999999999999
Q ss_pred HHHHHHHHHhCCC-CCcccchHHHHHHCCCCccccCceeeeecC
Q 008604 383 IATGMQFIENFPE-RTYKSMIIPIMQEDKRAGETTRKGFYLYDE 425 (560)
Q Consensus 383 ~~~~~~l~~~~~~-~~~~~~~l~~~v~~G~~G~k~g~GfY~y~~ 425 (560)
.++++.+++.+++ ++.|++++++|+++|++|+|||+|||+|++
T Consensus 241 ~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~ksG~GfY~y~~ 284 (314)
T PRK08269 241 YYASRYLAGEIGPDRFAPPAIVVRNMEEGRDGLRTGAGFYDYAG 284 (314)
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHCCCCcccCCCcceeCCC
Confidence 9999999998888 556889999999999999999999999964
No 19
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=4.6e-56 Score=449.40 Aligned_cols=277 Identities=22% Similarity=0.294 Sum_probs=248.4
Q ss_pred ccceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 008604 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (560)
Q Consensus 145 ~~~~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (560)
.++++|+|||+|+||++||..++.+|++|++||++++.++.+..++.+.++.+.+.+ +++. ...++++.++++ +.
T Consensus 5 ~~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~-~~~~---~~~~~i~~~~~l~~a 80 (321)
T PRK07066 5 TDIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQG-LAPG---ASPARLRFVATIEAC 80 (321)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcC-CChh---hHHhhceecCCHHHH
Confidence 457899999999999999999999999999999999999999999998888888877 4432 344688888888 46
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccHHHHHhhccCCCcEeecccCCCCCCCCeEEEEeCCCC
Q 008604 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQT 303 (560)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~~la~~~~~~~r~~g~hf~~P~~~~~lvEiv~g~~t 303 (560)
+++||+|||||||++++|+.+|+++++.+++++||+||||+++++++++.+.+|+|++|+|||||++.+|||||++|+.|
T Consensus 81 v~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~pLVEVv~g~~T 160 (321)
T PRK07066 81 VADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGERT 160 (321)
T ss_pred hcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCceEEe-cCccccchhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCC---ccHHHHHHHh
Q 008604 304 SPQVIVDLLDIGKKIKKTPIVV-GNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMP---MGPFRLADLV 377 (560)
Q Consensus 304 ~~e~~~~~~~l~~~lGk~~i~v-~d~~G~i~nri~~~~~~ea~~l~~~G~-~~~dID~a~~-~~G~~---~GPf~~~D~~ 377 (560)
++++++.+..|++.+||.||++ +|.||||+||++.++++||++++++|+ +++|||++|+ |+|+| +|||+++|++
T Consensus 161 ~~e~~~~~~~f~~~lGk~pV~v~kd~pGFi~NRl~~a~~~EA~~lv~eGvas~edID~a~~~g~g~r~~~~Gpf~~~Dl~ 240 (321)
T PRK07066 161 APEAVDAAMGIYRALGMRPLHVRKEVPGFIADRLLEALWREALHLVNEGVATTGEIDDAIRFGAGIRWSFMGTFLTYTLA 240 (321)
T ss_pred CHHHHHHHHHHHHHcCCEeEecCCCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccCcCHHHHhhhc
Confidence 9999999999999999999999 699999999999999999999999997 9999999999 99998 9999999999
Q ss_pred hhHH-HHHHHHHHHHhCCCC---CcccchHHHHHH------CCCCccccCceeeeecC
Q 008604 378 GFGV-AIATGMQFIENFPER---TYKSMIIPIMQE------DKRAGETTRKGFYLYDE 425 (560)
Q Consensus 378 Gld~-~~~~~~~l~~~~~~~---~~~~~~l~~~v~------~G~~G~k~g~GfY~y~~ 425 (560)
|+|. +.+.++++.+.+.+. ...+++..+|++ ++.+|.++..++|.|.+
T Consensus 241 Gld~g~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd 298 (321)
T PRK07066 241 GGDAGMRHFMQQFGPALELPWTKLVAPELTDALIDRVVEGTAEQQGPRSIKALERYRD 298 (321)
T ss_pred ChHHHHHHHHHHhhhhhhHHHHhcCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 9998 445555555544221 223557778887 78899999999998864
No 20
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=4.3e-47 Score=388.87 Aligned_cols=277 Identities=31% Similarity=0.535 Sum_probs=248.0
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cc
Q 008604 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SF 224 (560)
Q Consensus 146 ~~~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~ 224 (560)
.+++|+|||+|.||.+||..|+++|++|+++|++++.++.+.+.+........+.+. ....+.+++.+++++ .+
T Consensus 3 ~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~ 77 (311)
T PRK06130 3 PIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGI-----ASAGMGRIRMEAGLAAAV 77 (311)
T ss_pred CccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhccc-----HHHHhhceEEeCCHHHHh
Confidence 478999999999999999999999999999999999988877665544333222211 012345566667775 48
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccHHHHHhhccCCCcEeecccCCCCCCCCeEEEEeCCCCc
Q 008604 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTS 304 (560)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~~la~~~~~~~r~~g~hf~~P~~~~~lvEiv~g~~t~ 304 (560)
++||+||+|+|++.++|+.+++++...+++++||+|+||+++++++++.+.++.+++|+||++|++.++++|+++++.++
T Consensus 78 ~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~~~~~~~~ig~h~~~p~~~~~l~~i~~g~~t~ 157 (311)
T PRK06130 78 SGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQAVTRPERFVGTHFFTPADVIPLVEVVRGDKTS 157 (311)
T ss_pred ccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEccCCCCccCceEEEeCCCCCC
Confidence 89999999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCceEEec-CccccchhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCC---ccHHHHHHHhh
Q 008604 305 PQVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMP---MGPFRLADLVG 378 (560)
Q Consensus 305 ~e~~~~~~~l~~~lGk~~i~v~-d~~G~i~nri~~~~~~ea~~l~~~G~-~~~dID~a~~-~~G~~---~GPf~~~D~~G 378 (560)
+++++.+.+++..+|+.+++++ +.|||++||++.++++||+.++++|. ++++||.+++ ++||| +|||+++|.+|
T Consensus 158 ~~~~~~v~~l~~~~G~~~v~~~~d~~G~i~nr~~~~~~~Ea~~l~~~g~~~~~~id~~~~~~~g~~~~~~Gp~~~~D~~G 237 (311)
T PRK06130 158 PQTVATTMALLRSIGKRPVLVKKDIPGFIANRIQHALAREAISLLEKGVASAEDIDEVVKWSLGIRLALTGPLEQRDMNG 237 (311)
T ss_pred HHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCccCCCHHHHhhhhc
Confidence 9999999999999999999996 78999999999999999999999885 9999999998 99998 79999999999
Q ss_pred hHHHHHHHHHHHHhCCCCCcccchHHHHHHCCCCccccCceeeeecCCC
Q 008604 379 FGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLYDERR 427 (560)
Q Consensus 379 ld~~~~~~~~l~~~~~~~~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~~ 427 (560)
+|++.++++.+++.+++++.|++++++|+++|++|+|+|+|||+|+++.
T Consensus 238 l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~g~~G~~~g~gfy~y~~~~ 286 (311)
T PRK06130 238 LDVHLAVASYLYQDLENRTTPSPLLEEKVEAGELGAKSGQGFYAWPPER 286 (311)
T ss_pred cchHHHHHHHHHHhcCCcCCCCHHHHHHHHcCCccccCCCcCccCCCCC
Confidence 9999999999999998887889999999999999999999999997543
No 21
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.1e-40 Score=340.32 Aligned_cols=263 Identities=24% Similarity=0.338 Sum_probs=245.7
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-ccc
Q 008604 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFK 225 (560)
Q Consensus 147 ~~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~ 225 (560)
|++|+|||+|.||++||..++++|++|++||++++.++.+.++++..++..++.|.++.++....++++..+++++ .++
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~ 81 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVA 81 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhC
Confidence 5789999999999999999999999999999999999999999999999999999998888888889998888885 579
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccHHHHHhhccCCCcEeecccCCCCCCCCeEEEEeCCCCcH
Q 008604 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP 305 (560)
Q Consensus 226 ~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~~la~~~~~~~r~~g~hf~~P~~~~~lvEiv~g~~t~~ 305 (560)
+||+||+|+||+.++|+.+++++.+.+++++|++||||+++++++++.+.++.++++.|||+|++.++++|+++++.|++
T Consensus 82 ~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~~~~~~~~~~~~hp~~p~~~~~lveiv~~~~t~~ 161 (308)
T PRK06129 82 DADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTEHLAGRERCLVAHPINPPYLIPVVEVVPAPWTAP 161 (308)
T ss_pred CCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHHhcCCcccEEEEecCCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCceEEec-CccccchhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCC---ccHHHHHHHh--
Q 008604 306 QVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMP---MGPFRLADLV-- 377 (560)
Q Consensus 306 e~~~~~~~l~~~lGk~~i~v~-d~~G~i~nri~~~~~~ea~~l~~~G~-~~~dID~a~~-~~G~~---~GPf~~~D~~-- 377 (560)
++++.+.++++.+|+.+++++ +.+||++||++.++++||+.++++|. ++++||.+++ ++|++ +|||++.|..
T Consensus 162 ~~~~~~~~~~~~lG~~~v~v~~~~~G~i~nrl~~a~~~EA~~l~~~g~~~~~~id~~~~~~~g~~~~~~gp~~~~d~~~~ 241 (308)
T PRK06129 162 ATLARAEALYRAAGQSPVRLRREIDGFVLNRLQGALLREAFRLVADGVASVDDIDAVIRDGLGLRWSFMGPFETIDLNAP 241 (308)
T ss_pred HHHHHHHHHHHHcCCEEEEecCCCccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCccCcCHHHHHhcccc
Confidence 999999999999999999995 78999999999999999999999885 9999999999 89998 8999999987
Q ss_pred -hhHHHHHHHHHHHHhCCCCC-cccchHHHHHHC
Q 008604 378 -GFGVAIATGMQFIENFPERT-YKSMIIPIMQED 409 (560)
Q Consensus 378 -Gld~~~~~~~~l~~~~~~~~-~~~~~l~~~v~~ 409 (560)
|++.+......++..+++.. .|+|++.+|+++
T Consensus 242 ~g~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~~ 275 (308)
T PRK06129 242 GGVADYAQRYGPMYRRMAAERGQPVPWDGELVAR 275 (308)
T ss_pred ccHHHHHHHHHHHHHhhccccCCCchhhHHHHHH
Confidence 89999999889988887755 477888888873
No 22
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=100.00 E-value=6.1e-41 Score=314.29 Aligned_cols=180 Identities=38% Similarity=0.648 Sum_probs=162.1
Q ss_pred EEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCC
Q 008604 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVD 228 (560)
Q Consensus 149 ~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD 228 (560)
+|+|||+|.||++||..++.+|++|+++|++++.++++.+++++.++..+++|.+++++.++.+++++++++++++.+||
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~~ad 80 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAVDAD 80 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGCTES
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHhhhh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999888999
Q ss_pred EEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccHHHHHhhccCCCcEeecccCCCCCCCCeEEEEeCCCCcHHHH
Q 008604 229 MVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVI 308 (560)
Q Consensus 229 lVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~~la~~~~~~~r~~g~hf~~P~~~~~lvEiv~g~~t~~e~~ 308 (560)
+||||++|++++|+++|++|++.+++++||+||||+++++++++.+.+|+|++|+|||||++.+|+|||++++.|+++++
T Consensus 81 lViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~ 160 (180)
T PF02737_consen 81 LVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFNPPHLMPLVEVVPGPKTSPETV 160 (180)
T ss_dssp EEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTTT--EEEEEE-TTS-HHHH
T ss_pred eehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecccccccCceEEEeCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCceEEecCc
Q 008604 309 VDLLDIGKKIKKTPIVVGNC 328 (560)
Q Consensus 309 ~~~~~l~~~lGk~~i~v~d~ 328 (560)
+.+..+++.+||.|++++|+
T Consensus 161 ~~~~~~~~~~gk~pv~v~D~ 180 (180)
T PF02737_consen 161 DRVRALLRSLGKTPVVVKDT 180 (180)
T ss_dssp HHHHHHHHHTT-EEEEEES-
T ss_pred HHHHHHHHHCCCEEEEecCC
Confidence 99999999999999999874
No 23
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=100.00 E-value=3.7e-37 Score=332.62 Aligned_cols=244 Identities=23% Similarity=0.320 Sum_probs=206.5
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccc
Q 008604 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (560)
Q Consensus 146 ~~~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 224 (560)
.+++|+|||+|+||++||..|+++|++|++||+++++++...+.+...... .. .+.... ....+++++++++ +.+
T Consensus 3 ~i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~-~~--~l~~~~-~~~~g~i~~~~~~~ea~ 78 (495)
T PRK07531 3 MIMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERA-YA--MLTDAP-LPPEGRLTFCASLAEAV 78 (495)
T ss_pred CcCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHH-Hh--hhccch-hhhhhceEeeCCHHHHh
Confidence 367999999999999999999999999999999999887643322221111 11 111111 1123456777777 468
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccHHHHHhhccCCCcEeecccCCCCCCCCeEEEEeCCCCc
Q 008604 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTS 304 (560)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~~la~~~~~~~r~~g~hf~~P~~~~~lvEiv~g~~t~ 304 (560)
++||+||||+||+.++|+.+|+++.+.+++++||+||||+++++++++.+.+|.++++.|||||++.++++|+++|+.|+
T Consensus 79 ~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~nP~~~~~Lvevv~g~~t~ 158 (495)
T PRK07531 79 AGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPVYLLPLVELVGGGKTS 158 (495)
T ss_pred cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecCCCcccCceEEEcCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCceEEec-CccccchhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCC---ccHHHHHHHhh
Q 008604 305 PQVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMP---MGPFRLADLVG 378 (560)
Q Consensus 305 ~e~~~~~~~l~~~lGk~~i~v~-d~~G~i~nri~~~~~~ea~~l~~~G~-~~~dID~a~~-~~G~~---~GPf~~~D~~G 378 (560)
+++++.++++++.+|+.+++++ +.+||++||++.++++||+.++++|. ++++||.+++ ++|++ +|||++.|+.|
T Consensus 159 ~e~~~~~~~~~~~lG~~~v~~~k~~~gfi~nrl~~a~~~EA~~L~~~g~~s~~~id~~~~~g~g~~~~~~Gpf~~~dl~g 238 (495)
T PRK07531 159 PETIRRAKEILREIGMKPVHIAKEIDAFVGDRLLEALWREALWLVKDGIATTEEIDDVIRYSFGLRWAQMGLFETYRIAG 238 (495)
T ss_pred HHHHHHHHHHHHHcCCEEEeecCCCcchhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccccchHHHHHhcC
Confidence 9999999999999999999995 89999999999999999999999875 9999999999 87764 89999999998
Q ss_pred hH-HHHHHHHHHHHhC
Q 008604 379 FG-VAIATGMQFIENF 393 (560)
Q Consensus 379 ld-~~~~~~~~l~~~~ 393 (560)
++ .+.+.++++.+.+
T Consensus 239 ~~~g~~~~~~~~~~~~ 254 (495)
T PRK07531 239 GEAGMRHFLAQFGPCL 254 (495)
T ss_pred cHHHHHHHHHHhchhh
Confidence 65 4555555554443
No 24
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=8e-35 Score=267.19 Aligned_cols=229 Identities=28% Similarity=0.466 Sum_probs=211.1
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHc----CCCCHHHHHhhhcccccccCc-
Q 008604 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKK----GKMTQEKFEKTISLLTGVLDY- 221 (560)
Q Consensus 147 ~~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~----g~~~~~~~~~~~~~i~~~~~~- 221 (560)
..||+|+|.|..|+++|..|++.||+|.+||+.++.++-+++.+++.+..+-+. |.++. ++.+..|.+++++
T Consensus 3 ~~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa---~eqla~is~t~~l~ 79 (313)
T KOG2305|consen 3 FGKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSA---DEQLALISGTTSLN 79 (313)
T ss_pred ccceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccH---HHHHHHHhCCccHH
Confidence 579999999999999999999999999999999999999999998887776554 55554 4566788889998
Q ss_pred ccccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccHHHHHhhccCCCcEeecccCCCCCCCCeEEEEeCC
Q 008604 222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTN 301 (560)
Q Consensus 222 ~~~~~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~~la~~~~~~~r~~g~hf~~P~~~~~lvEiv~g~ 301 (560)
+.+++|=.|-|||||++++|+++|+++++.+.+.+|++|+||++.++.+.+.+.+.++++..|+.|||...||||++|.+
T Consensus 80 E~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~gL~~k~q~lvaHPvNPPyfiPLvElVPaP 159 (313)
T KOG2305|consen 80 ELVKGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPSKFSAGLINKEQCLVAHPVNPPYFIPLVELVPAP 159 (313)
T ss_pred HHHhhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccChHHHhhhhhhhhheeEecCCCCCcccchheeccCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHhcCCceEEec-CccccchhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCC---ccHHHHHH
Q 008604 302 QTSPQVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMP---MGPFRLAD 375 (560)
Q Consensus 302 ~t~~e~~~~~~~l~~~lGk~~i~v~-d~~G~i~nri~~~~~~ea~~l~~~G~-~~~dID~a~~-~~G~~---~GPf~~~D 375 (560)
-|+++++++..++.+.+|..|+... +.-||..||+..+++||.-+++..|+ +..|+|.+|. |+|.+ .||+|.+.
T Consensus 160 wTsp~tVdrt~~lM~sigq~pV~l~rei~Gf~lnriq~Ailne~wrLvasGil~v~dvD~VmS~GLG~RYAflG~lET~H 239 (313)
T KOG2305|consen 160 WTSPDTVDRTRALMRSIGQEPVTLKREILGFALNRIQYAILNETWRLVASGILNVNDVDAVMSAGLGPRYAFLGPLETAH 239 (313)
T ss_pred CCChhHHHHHHHHHHHhCCCCcccccccccceeccccHHHHHHHHHHHHccCcchhhHHHHHhcCCCcchhcccchhhhh
Confidence 9999999999999999999999885 68999999999999999999999997 9999999999 99986 59999876
Q ss_pred Hhh
Q 008604 376 LVG 378 (560)
Q Consensus 376 ~~G 378 (560)
+.-
T Consensus 240 LNA 242 (313)
T KOG2305|consen 240 LNA 242 (313)
T ss_pred cCc
Confidence 543
No 25
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.96 E-value=1.5e-28 Score=265.28 Aligned_cols=165 Identities=15% Similarity=0.103 Sum_probs=153.7
Q ss_pred hcCCCceeeccCCcccHHHHHhhccCCCcEeecccCCCCCCCCeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEecCccc
Q 008604 251 YCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG 330 (560)
Q Consensus 251 ~~~~~~ii~sntSsl~i~~la~~~~~~~r~~g~hf~~P~~~~~lvEiv~g~~t~~e~~~~~~~l~~~lGk~~i~v~d~~G 330 (560)
.+.+++++++++++.+.+..+....+|+|++|+|||||++.++++||++++.|++++++.+..+++.+||.|++++|+||
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~r~vg~Hf~~P~~~~~lvEvv~~~~Ts~e~~~~~~~~~~~~gk~pi~v~d~~G 416 (507)
T PRK08268 337 PSADGLVLLAPTGGDTTTAAAREGLDAARVVLIDLLLDYAAAKRRTLMAAPATSPAARDAAHALFQQDGKAVSVIRDSPG 416 (507)
T ss_pred cccccceEeeccCcchHHHHHHhcCCcccEEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEeCCCcc
Confidence 45678888888888878887777778999999999999999999999999999999999999999999999999999999
Q ss_pred cchhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHHHHhhhHHHHHHHHHHHHhCCC-CCcccchHHHHH
Q 008604 331 FAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIATGMQFIENFPE-RTYKSMIIPIMQ 407 (560)
Q Consensus 331 ~i~nri~~~~~~ea~~l~~~G~-~~~dID~a~~-~~G~~~GPf~~~D~~Gld~~~~~~~~l~~~~~~-~~~~~~~l~~~v 407 (560)
||+||++.++++|+++++++|+ +++|||.+|+ ++|||+|||+|+|.+|+|+++++++++++.+++ ++.|++++++|+
T Consensus 417 fi~nRll~~~~nEa~~ll~eGvas~~dID~a~~~g~G~p~GP~~~~D~~Gld~~~~~~~~l~~~~g~~~~~p~~ll~~~v 496 (507)
T PRK08268 417 FVAQRTVAMIVNEAADIAQQGIASPADIDLAMRLGLNYPLGPLAWGDRLGAARILRVLENLQALYGDPRYRPSPWLRRRA 496 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhCHHHHHHHHHHHHHHhCCCcCCcCHHHHHHH
Confidence 9999999999999999999998 9999999999 999999999999999999999999999999996 556889999999
Q ss_pred HCCCCccccCceeee
Q 008604 408 EDKRAGETTRKGFYL 422 (560)
Q Consensus 408 ~~G~~G~k~g~GfY~ 422 (560)
++| ..||.
T Consensus 497 ~~G-------~~~~~ 504 (507)
T PRK08268 497 ALG-------LSLRS 504 (507)
T ss_pred HcC-------CCcCC
Confidence 986 66764
No 26
>PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A ....
Probab=99.92 E-value=1.5e-25 Score=189.00 Aligned_cols=94 Identities=40% Similarity=0.635 Sum_probs=87.5
Q ss_pred ccchhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccHHHHHHHhhhHHHHHHHHHHHHhCCCCCc-ccchHHHH
Q 008604 330 GFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTY-KSMIIPIM 406 (560)
Q Consensus 330 G~i~nri~~~~~~ea~~l~~~G~-~~~dID~a~~-~~G~~~GPf~~~D~~Gld~~~~~~~~l~~~~~~~~~-~~~~l~~~ 406 (560)
|||+||++.++++||++++++|+ +++|||.+++ ++|||+|||+++|.+|+|++.++++++.+.++++.+ |++++++|
T Consensus 1 GFi~nRl~~~~~~ea~~l~~egvas~~~ID~~~~~~~G~p~Gpf~l~D~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~m 80 (97)
T PF00725_consen 1 GFIVNRLLAALLNEAARLVEEGVASPEDIDRAMRYGLGFPMGPFELADLVGLDVVYHILEYLAAALGDRAFRPSPLLKEM 80 (97)
T ss_dssp TTTHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTHSSTHHHHHHHHHHHHHHHHHHHHHHHHCCGGGSS-HHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCccchHHHHhCchHHHHHHHHHHHhcCCCcCCchHHHHHH
Confidence 89999999999999999999996 9999999999 899999999999999999999999999999998854 68999999
Q ss_pred HHCCCCccccCceeeee
Q 008604 407 QEDKRAGETTRKGFYLY 423 (560)
Q Consensus 407 v~~G~~G~k~g~GfY~y 423 (560)
+++|++|+|+|+|||+|
T Consensus 81 v~~g~~G~k~g~Gfy~Y 97 (97)
T PF00725_consen 81 VEEGRLGRKSGKGFYDY 97 (97)
T ss_dssp HHTT--BGGGTBSSSBE
T ss_pred HHCCCCcCcCCCcceeC
Confidence 99999999999999998
No 27
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.89 E-value=1.1e-22 Score=219.08 Aligned_cols=118 Identities=15% Similarity=0.148 Sum_probs=113.1
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEecCccccchhchHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCccH
Q 008604 293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGP 370 (560)
Q Consensus 293 ~lvEiv~g~~t~~e~~~~~~~l~~~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~-~~~dID~a~~-~~G~~~GP 370 (560)
+.+||+++..|++++++.+..++..+||.|++++|.||||+||++.+++|||++++++|+ +++|||.+|+ ++|||+||
T Consensus 378 ~~vEv~~~~~Ts~e~~~~a~~~~~~~Gk~pi~v~D~pGfi~nRil~~~~nEA~~ll~eGvas~~dID~a~~~g~G~P~GP 457 (503)
T TIGR02279 378 KRIAIAAAAVNPDSATRKAIYYLQQAGKKVLQIADYPGLLILRTVAMLANEAADAVLQGVASAQDIDTAMRLGVNYPYGP 457 (503)
T ss_pred CeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCcCH
Confidence 578999999999999999999999999999999999999999999999999999999998 8999999998 99999999
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhCCC-CCcccchHHHHHHCC
Q 008604 371 FRLADLVGFGVAIATGMQFIENFPE-RTYKSMIIPIMQEDK 410 (560)
Q Consensus 371 f~~~D~~Gld~~~~~~~~l~~~~~~-~~~~~~~l~~~v~~G 410 (560)
|+|+|.+|+|+++++++++++.+++ ++.|+++|++|+..|
T Consensus 458 ~~~~D~~Gld~~~~~l~~l~~~~~~~~~~p~~~L~~~v~~g 498 (503)
T TIGR02279 458 LAWAAQLGWQRILRVLENLQHHYGEERYRPSSLLRRRALLG 498 (503)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHcCCCcCCcCHHHHHHHHcC
Confidence 9999999999999999999999996 556889999999987
No 28
>PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A ....
Probab=99.80 E-value=1.1e-19 Score=153.18 Aligned_cols=88 Identities=33% Similarity=0.516 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHHhCCC-CCCcHHH
Q 008604 461 DIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEF-FKPCAFL 539 (560)
Q Consensus 461 ~i~~r~l~~~~~ea~~~l~egv~~~~~diD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~~-~~p~~~l 539 (560)
+|+||++.+++|||+++++|||+ +|+|||.+++.|+|||. |||+++|.+|++.+.+.++.|.+.+++. |.|+++|
T Consensus 2 Fi~nRl~~~~~~ea~~l~~egva-s~~~ID~~~~~~~G~p~---Gpf~l~D~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l 77 (97)
T PF00725_consen 2 FIVNRLLAALLNEAARLVEEGVA-SPEDIDRAMRYGLGFPM---GPFELADLVGLDVVYHILEYLAAALGDRAFRPSPLL 77 (97)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTSS-SHHHHHHHHHHHHTHSS---THHHHHHHHHHHHHHHHHHHHHHHHCCGGGSS-HHH
T ss_pred hHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHhCCCCC---ccchHHHHhCchHHHHHHHHHHHhcCCCcCCchHHH
Confidence 47899999999999999999999 89999999999999997 9999999999999999999999999984 8999999
Q ss_pred HHHHH-------cCCCCcCC
Q 008604 540 AERAG-------KGATLSAP 552 (560)
Q Consensus 540 ~~~~~-------~g~~f~~~ 552 (560)
++|++ +|+|||+|
T Consensus 78 ~~mv~~g~~G~k~g~Gfy~Y 97 (97)
T PF00725_consen 78 KEMVEEGRLGRKSGKGFYDY 97 (97)
T ss_dssp HHHHHTT--BGGGTBSSSBE
T ss_pred HHHHHCCCCcCcCCCcceeC
Confidence 99995 79999998
No 29
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.74 E-value=4.2e-17 Score=161.19 Aligned_cols=188 Identities=20% Similarity=0.256 Sum_probs=144.3
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (560)
++|+|||+|.||.+||.+|.++||+|++||+++++..+.. .+.|... ..+..+.+.+|
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~----------~~~Ga~~------------a~s~~eaa~~a 58 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELL----------AAAGATV------------AASPAEAAAEA 58 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHH----------HHcCCcc------------cCCHHHHHHhC
Confidence 4899999999999999999999999999999998843221 2334321 12234678999
Q ss_pred CEEEEeccCChHHHHHHHH--HHHhhcCCCceeeccCCcccHH---HHHhhccCCCcEeecccCC-CCCCC-------Ce
Q 008604 228 DMVIEAIIENVSLKQQIFA--DLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFFS-PAHVM-------PL 294 (560)
Q Consensus 228 DlVIeav~e~~~~k~~~~~--~l~~~~~~~~ii~sntSsl~i~---~la~~~~~~~r~~g~hf~~-P~~~~-------~l 294 (560)
|+||.||+++.++...++. .+.+.+++++++++ .||++++ ++++.+. -.|.+|+. |+... .|
T Consensus 59 DvVitmv~~~~~V~~V~~g~~g~~~~~~~G~i~ID-mSTisp~~a~~~a~~~~----~~G~~~lDAPVsGg~~~A~~GtL 133 (286)
T COG2084 59 DVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVID-MSTISPETARELAAALA----AKGLEFLDAPVSGGVPGAAAGTL 133 (286)
T ss_pred CEEEEecCCHHHHHHHHhCccchhhcCCCCCEEEE-CCCCCHHHHHHHHHHHH----hcCCcEEecCccCCchhhhhCce
Confidence 9999999999999999885 58888899998874 4455544 4554442 35788874 76542 45
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhcCCceEEecCc-cc---cchhchHHHH----HHHHHHHHH-cCCCHHHHHHHHH-hc
Q 008604 295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC-TG---FAVNRMFFPY----TQAAFLLVE-RGTDLYLIDRAIT-KF 364 (560)
Q Consensus 295 vEiv~g~~t~~e~~~~~~~l~~~lGk~~i~v~d~-~G---~i~nri~~~~----~~ea~~l~~-~G~~~~dID~a~~-~~ 364 (560)
.-++.| +++.+++++++++.+|+..+++++. .| .++|+++... +.||+.+.+ .|++++.+..++. +.
T Consensus 134 timvGG---~~~~f~r~~pvl~~~g~~i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~~ 210 (286)
T COG2084 134 TIMVGG---DAEAFERAKPVLEAMGKNIVHVGPVGAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVISGGA 210 (286)
T ss_pred EEEeCC---CHHHHHHHHHHHHHhcCceEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccc
Confidence 545555 8999999999999999999999874 44 3788888754 589999886 6899999999998 54
Q ss_pred C
Q 008604 365 G 365 (560)
Q Consensus 365 G 365 (560)
+
T Consensus 211 ~ 211 (286)
T COG2084 211 A 211 (286)
T ss_pred c
Confidence 3
No 30
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=99.74 E-value=6.7e-18 Score=155.99 Aligned_cols=91 Identities=27% Similarity=0.442 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHHhCC--CCCCc
Q 008604 459 EKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGE--FFKPC 536 (560)
Q Consensus 459 ~~~i~~r~l~~~~~ea~~~l~egv~~~~~diD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~--~~~p~ 536 (560)
.-+|+||+|.++++||+|+++.|.+ +.+|||.+|.+|.|||+ |||+++|.+|+|++.-+|+-|+..+++ .|.|+
T Consensus 199 pGFIVNRlLiPyl~ea~r~yerGdA-skeDIDtaMklGagyPM---GPfEL~DyvGLDt~kfvmdgwhe~~pe~~~f~ps 274 (298)
T KOG2304|consen 199 PGFIVNRLLIPYLMEAIRMYERGDA-SKEDIDTAMKLGAGYPM---GPFELADYVGLDTCKFVMDGWHEGYPEDSLFAPS 274 (298)
T ss_pred CchhhhHHHHHHHHHHHHHHHhcCC-cHhhHHHHHhccCCCCC---ChHHHHHHhhHHHHHHHHHHHHhcCCcccccCCC
Confidence 3589999999999999999999999 89999999999999999 999999999999999999999999964 89999
Q ss_pred HHHHHHHH-------cCCCCcCCC
Q 008604 537 AFLAERAG-------KGATLSAPV 553 (560)
Q Consensus 537 ~~l~~~~~-------~g~~f~~~~ 553 (560)
|+|.+++. +|+|||+|.
T Consensus 275 Pll~klVaegklGrKtg~GfY~Yk 298 (298)
T KOG2304|consen 275 PLLDKLVAEGKLGRKTGEGFYKYK 298 (298)
T ss_pred hHHHHHHhccccccccCccceecC
Confidence 99999994 799999994
No 31
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.71 E-value=1.2e-16 Score=162.23 Aligned_cols=187 Identities=17% Similarity=0.279 Sum_probs=139.6
Q ss_pred EEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCC
Q 008604 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVD 228 (560)
Q Consensus 149 ~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD 228 (560)
+|+|||+|.||.+||..++++|++|++||+++++++... +.|.. ..++..+.+++||
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~-----------~~g~~------------~~~~~~~~~~~aD 57 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELL-----------AAGAV------------TAETARQVTEQAD 57 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HCCCc------------ccCCHHHHHhcCC
Confidence 599999999999999999999999999999998776532 23321 1122235678999
Q ss_pred EEEEeccCChHHHHHHHH--HHHhhcCCCceeeccCCcccHH---HHHhhccCCCcEeecccCC-CCCC------CCeEE
Q 008604 229 MVIEAIIENVSLKQQIFA--DLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFFS-PAHV------MPLLE 296 (560)
Q Consensus 229 lVIeav~e~~~~k~~~~~--~l~~~~~~~~ii~sntSsl~i~---~la~~~~~~~r~~g~hf~~-P~~~------~~lvE 296 (560)
+||+|+|++..++..++. .+.+.++++++|+ |+|+.++. ++.+.+.. .|+||+. |+.. ...+.
T Consensus 58 ivi~~vp~~~~~~~v~~~~~~~~~~~~~g~iiv-d~st~~~~~~~~l~~~l~~----~g~~~~~~pv~g~~~~a~~g~l~ 132 (291)
T TIGR01505 58 VIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLV-DMSSISPIESKRFAKAVKE----KGIDYLDAPVSGGEIGAIEGTLS 132 (291)
T ss_pred EEEEecCCHHHHHHHHcCcchHhhcCCCCCEEE-ECCCCCHHHHHHHHHHHHH----cCCCEEecCCCCCHHHHhcCCEE
Confidence 999999998888877664 3666778888886 55565553 45555533 2677765 4331 23345
Q ss_pred EEeCCCCcHHHHHHHHHHHHhcCCceEEecC-ccc---cchhchHHHH----HHHHHHHHH-cCCCHHHHHHHHH-hcC
Q 008604 297 IVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTG---FAVNRMFFPY----TQAAFLLVE-RGTDLYLIDRAIT-KFG 365 (560)
Q Consensus 297 iv~g~~t~~e~~~~~~~l~~~lGk~~i~v~d-~~G---~i~nri~~~~----~~ea~~l~~-~G~~~~dID~a~~-~~G 365 (560)
++.+ .++++++.+.++++.+|+.++.+++ .+| +++|+++... ++|++.+.+ .|++++++.+++. +.+
T Consensus 133 i~~g--g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~ 209 (291)
T TIGR01505 133 IMVG--GDQAVFDRVKPLFEALGKNIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLA 209 (291)
T ss_pred EEec--CCHHHHHHHHHHHHHhcCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcc
Confidence 5555 3689999999999999999999975 566 4889988865 789998885 6899999999998 544
No 32
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.70 E-value=5.4e-17 Score=164.43 Aligned_cols=93 Identities=26% Similarity=0.341 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCcHHH
Q 008604 460 KDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFL 539 (560)
Q Consensus 460 ~~i~~r~l~~~~~ea~~~l~egv~~~~~diD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l 539 (560)
-++.||++.+++|||++|+++||+ +|+|||.+|++|+|||+ |||+++|.+|++.+++.++.+++.++++|.|+++|
T Consensus 185 Gf~~nRl~~~~~~ea~~~~~~gv~-~~~~iD~~~~~g~g~p~---Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~~~l 260 (288)
T PRK09260 185 GFVTSRISALVGNEAFYMLQEGVA-TAEDIDKAIRLGLNFPM---GPLELGDLVGLDTRLNNLKYLHETLGEKYRPAPLL 260 (288)
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhCCCCCC---CHHHHHHHhhHHHHHHHHHHHHHHhCCCCCCCHHH
Confidence 489999999999999999999998 99999999999999998 99999999999999999999999999999999999
Q ss_pred HHHHH-------cCCCCcCCCccc
Q 008604 540 AERAG-------KGATLSAPVEEA 556 (560)
Q Consensus 540 ~~~~~-------~g~~f~~~~~~~ 556 (560)
++|++ +|+|||+|++++
T Consensus 261 ~~~~~~g~~G~k~g~Gfy~y~~~~ 284 (288)
T PRK09260 261 EKYVKAGRLGRKTGRGVYDYTNRE 284 (288)
T ss_pred HHHHHCCCCccccCCEEEECCCCC
Confidence 99995 799999998865
No 33
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.68 E-value=1.4e-16 Score=160.96 Aligned_cols=91 Identities=29% Similarity=0.469 Sum_probs=86.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHHhCC-CCCCc
Q 008604 458 SEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGE-FFKPC 536 (560)
Q Consensus 458 ~~~~i~~r~l~~~~~ea~~~l~egv~~~~~diD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~ 536 (560)
...+|.||++.+++|||++|+++||+ +|+|||.+|++|+|||+ |||+++|.+|++.+.++++.|++.+++ +|+|+
T Consensus 184 ~~g~i~~Ri~~~~~~ea~~~~~~gv~-~~~diD~~~~~g~g~p~---Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~~ 259 (282)
T PRK05808 184 APGFVVNRILIPMINEAIFVLAEGVA-TAEDIDEGMKLGCNHPI---GPLALADLIGLDTCLAIMEVLYEGFGDSKYRPC 259 (282)
T ss_pred ccChHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCC---CHHHHHHHhhhHHHHHHHHHHHHHcCCCcCCCC
Confidence 44689999999999999999999998 79999999999999997 999999999999999999999999986 89999
Q ss_pred HHHHHHHH-------cCCCCcCC
Q 008604 537 AFLAERAG-------KGATLSAP 552 (560)
Q Consensus 537 ~~l~~~~~-------~g~~f~~~ 552 (560)
++|++|++ +|+|||+|
T Consensus 260 ~~l~~~~~~g~~G~k~g~Gfy~y 282 (282)
T PRK05808 260 PLLRKMVAAGWLGRKTGRGFYDY 282 (282)
T ss_pred HHHHHHHHCCCCccccCCcccCC
Confidence 99999995 78999998
No 34
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.68 E-value=1.1e-15 Score=155.53 Aligned_cols=188 Identities=17% Similarity=0.273 Sum_probs=139.9
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 008604 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (560)
Q Consensus 147 ~~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (560)
+++|+|||+|.||..+|..+++.|++|++||++++..+... +.|. ..++++ +.+.
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~-----------~~g~-------------~~~~~~~e~~~ 57 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVI-----------AAGA-------------ETASTAKAVAE 57 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HCCC-------------eecCCHHHHHh
Confidence 36899999999999999999999999999999998765432 2221 123343 3468
Q ss_pred CCCEEEEeccCChHHHHHHHH--HHHhhcCCCceeeccCCcccHH---HHHhhccCCCcEeecccCC-CCCCC------C
Q 008604 226 DVDMVIEAIIENVSLKQQIFA--DLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFFS-PAHVM------P 293 (560)
Q Consensus 226 ~aDlVIeav~e~~~~k~~~~~--~l~~~~~~~~ii~sntSsl~i~---~la~~~~~~~r~~g~hf~~-P~~~~------~ 293 (560)
+||+||.|+|+...++..++. .+.+.++++++|+ ++|+.++. ++++.+.. .|.||++ |+... .
T Consensus 58 ~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~g~iii-d~st~~~~~~~~l~~~~~~----~g~~~~d~pv~g~~~~a~~g 132 (296)
T PRK11559 58 QCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVVI-DMSSIAPLASREIAAALKA----KGIEMLDAPVSGGEPKAIDG 132 (296)
T ss_pred cCCEEEEeCCCHHHHHHHHcCcchHhhcCCCCcEEE-ECCCCCHHHHHHHHHHHHH----cCCcEEEcCCCCCHHHHhhC
Confidence 999999999998888777653 4677788899886 56666554 45555432 2778775 43321 3
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCceEEecC-ccccc---hhchHHHH----HHHHHHHHH-cCCCHHHHHHHHH-h
Q 008604 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGFA---VNRMFFPY----TQAAFLLVE-RGTDLYLIDRAIT-K 363 (560)
Q Consensus 294 lvEiv~g~~t~~e~~~~~~~l~~~lGk~~i~v~d-~~G~i---~nri~~~~----~~ea~~l~~-~G~~~~dID~a~~-~ 363 (560)
.++++.| .+++.++.+.++++.+|+.++.+++ .+|++ +|+++... ++|++.+.+ .|+++++++.+++ +
T Consensus 133 ~l~i~~g--g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~ 210 (296)
T PRK11559 133 TLSVMVG--GDKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGG 210 (296)
T ss_pred cEEEEEC--CCHHHHHHHHHHHHHhcCCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 3556655 3689999999999999999999975 56764 78877653 799999886 6889999999997 5
Q ss_pred cC
Q 008604 364 FG 365 (560)
Q Consensus 364 ~G 365 (560)
++
T Consensus 211 ~~ 212 (296)
T PRK11559 211 LA 212 (296)
T ss_pred cc
Confidence 44
No 35
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.68 E-value=1.7e-16 Score=160.07 Aligned_cols=89 Identities=22% Similarity=0.347 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHHhCC-CCCCcHH
Q 008604 460 KDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGE-FFKPCAF 538 (560)
Q Consensus 460 ~~i~~r~l~~~~~ea~~~l~egv~~~~~diD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~~~ 538 (560)
-++.||++.+++|||++|++||++ +|+|||.++++|+|||+ |||+++|.+|++.+++.++.+++.+++ +|.|+++
T Consensus 190 Gfi~nRi~~~~~~Ea~~ll~eGv~-~~~dID~~~~~g~G~p~---Gpf~~~D~~Gld~~~~~~~~l~~~~~~~~~~p~~~ 265 (286)
T PRK07819 190 GFVVNALLVPYLLSAIRMVESGFA-TAEDIDKAMVLGCAHPM---GPLRLSDLVGLDTVKAIADSMYEEFKEPLYAPPPL 265 (286)
T ss_pred ChHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCC---CHHHHHHHhccHHHHHHHHHHHHHcCCCCCCCCHH
Confidence 489999999999999999999998 89999999999999998 999999999999999999999999986 8999999
Q ss_pred HHHHHH-------cCCCCcCC
Q 008604 539 LAERAG-------KGATLSAP 552 (560)
Q Consensus 539 l~~~~~-------~g~~f~~~ 552 (560)
|++|++ +|+|||+|
T Consensus 266 l~~~v~~g~~G~k~g~GfY~y 286 (286)
T PRK07819 266 LLRMVEAGLLGKKSGRGFYTY 286 (286)
T ss_pred HHHHHHCCCCcccCCCEeccC
Confidence 999995 79999998
No 36
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.66 E-value=9.4e-15 Score=147.27 Aligned_cols=154 Identities=19% Similarity=0.228 Sum_probs=120.0
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (560)
++|+|||+|.||.+||..|.++|++|++||++++.++.+. +.|..+ ..+++.+.+.+|
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~-----------~~g~~~-----------~~~~~~~~~~~a 58 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAI-----------ERGLVD-----------EASTDLSLLKDC 58 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----------HCCCcc-----------cccCCHhHhcCC
Confidence 3799999999999999999999999999999998876543 233221 123344567899
Q ss_pred CEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccHHHHHhhccCCCcEeecccCCCCC------------CCCeE
Q 008604 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH------------VMPLL 295 (560)
Q Consensus 228 DlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~~la~~~~~~~r~~g~hf~~P~~------------~~~lv 295 (560)
|+||.|+|++.. .++++++.+.++++++| ++++|+....+......+.+|+|+||+.+.. ..+.+
T Consensus 59 DlVilavp~~~~--~~~~~~l~~~l~~~~ii-~d~~Svk~~~~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~ 135 (279)
T PRK07417 59 DLVILALPIGLL--LPPSEQLIPALPPEAIV-TDVGSVKAPIVEAWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPW 135 (279)
T ss_pred CEEEEcCCHHHH--HHHHHHHHHhCCCCcEE-EeCcchHHHHHHHHHHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcE
Confidence 999999996543 45788898888889877 5666677665555545556899999975332 24556
Q ss_pred EEEeCCCCcHHHHHHHHHHHHhcCCceEEec
Q 008604 296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (560)
Q Consensus 296 Eiv~g~~t~~e~~~~~~~l~~~lGk~~i~v~ 326 (560)
-+++++.++++.++.+..+++.+|..++.++
T Consensus 136 ~l~p~~~~~~~~~~~v~~l~~~lG~~~v~~~ 166 (279)
T PRK07417 136 VLTPTENTDLNALAIVEELAVSLGSKIYTAD 166 (279)
T ss_pred EEccCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 6889999999999999999999999998886
No 37
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.66 E-value=3.4e-16 Score=159.12 Aligned_cols=95 Identities=24% Similarity=0.403 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHHhCC-CCCCcH
Q 008604 459 EKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGE-FFKPCA 537 (560)
Q Consensus 459 ~~~i~~r~l~~~~~ea~~~l~egv~~~~~diD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~~ 537 (560)
..++.||++.+++|||++|+++||+ +++|||.++++|+|||+ |||+++|.+|++.+.+.++.+++.+|+ +|.|++
T Consensus 186 ~g~i~nri~~~~~~ea~~~~~~gv~-~~~~iD~~~~~g~g~~~---Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~~~ 261 (295)
T PLN02545 186 PGFIVNRILMPMINEAFYALYTGVA-SKEDIDTGMKLGTNHPM---GPLHLADFIGLDTCLSIMKVLHEGLGDSKYRPCP 261 (295)
T ss_pred ccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhccCCCC---CHHHHHHHhchHHHHHHHHHHHHHcCCCcCCCCH
Confidence 3589999999999999999999998 89999999999999998 999999999999999999999998986 899999
Q ss_pred HHHHHHH-------cCCCCcCCCcccc
Q 008604 538 FLAERAG-------KGATLSAPVEEAK 557 (560)
Q Consensus 538 ~l~~~~~-------~g~~f~~~~~~~~ 557 (560)
+|++|++ +|+|||+|..++.
T Consensus 262 ~l~~~~~~g~~G~k~g~Gfy~y~~~~~ 288 (295)
T PLN02545 262 LLVQYVDAGRLGRKSGRGVYHYDGKKR 288 (295)
T ss_pred HHHHHHHCCCCcccCCCeeeECCCCCC
Confidence 9999995 7899999987653
No 38
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.63 E-value=1.2e-15 Score=154.80 Aligned_cols=92 Identities=25% Similarity=0.385 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHHhCC-CCCCcHH
Q 008604 460 KDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGE-FFKPCAF 538 (560)
Q Consensus 460 ~~i~~r~l~~~~~ea~~~l~egv~~~~~diD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~~~ 538 (560)
-.+.||++.+++|||++++++|++ +++|||.+|++|+|||. |||+++|.+|++.+.+.++.+++.+++ +|.|+++
T Consensus 187 g~i~nRl~~~~~~ea~~~~~~g~~-~~~~iD~~~~~g~g~~~---GP~~~~D~~Gl~~~~~~~~~~~~~~~~~~~~p~~~ 262 (292)
T PRK07530 187 AFIVNRILLPMINEAIYTLYEGVG-SVEAIDTAMKLGANHPM---GPLELADFIGLDTCLSIMQVLHDGLADSKYRPCPL 262 (292)
T ss_pred ChHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCC---CHHHHHHHhhhHHHHHHHHHHHHHcCCCcCCCCHH
Confidence 479999999999999999999998 89999999999999997 999999999999999999999998886 8999999
Q ss_pred HHHHH-------HcCCCCcCCCcc
Q 008604 539 LAERA-------GKGATLSAPVEE 555 (560)
Q Consensus 539 l~~~~-------~~g~~f~~~~~~ 555 (560)
|++|+ ++|+|||+|+.+
T Consensus 263 l~~~v~~g~~G~k~g~Gfy~y~~~ 286 (292)
T PRK07530 263 LVKYVEAGWLGRKTGRGFYDYRGE 286 (292)
T ss_pred HHHHHHCCCCccccCCEeeeCCCC
Confidence 99999 589999999655
No 39
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=99.61 E-value=2e-15 Score=150.73 Aligned_cols=92 Identities=24% Similarity=0.404 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHHhC--CCCCCc
Q 008604 459 EKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYG--EFFKPC 536 (560)
Q Consensus 459 ~~~i~~r~l~~~~~ea~~~l~egv~~~~~diD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~--~~~~p~ 536 (560)
+-+|.||++.++++||++++++|++ +|++||.+|++|+|||+ |||+++|.+|+|..++.++.+...++ +.|.|+
T Consensus 185 pGFi~NRil~~~~~eA~~l~~eGva-~~e~ID~~~~~~~G~pm---Gpf~l~D~~GlD~~~~i~~~~~~~~~~~~~~~~~ 260 (307)
T COG1250 185 PGFIVNRLLAALLNEAIRLLEEGVA-TPEEIDAAMRQGLGLPM---GPFELADLIGLDVMLHIMKVLNETLGDDPYYRPP 260 (307)
T ss_pred CceehHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhccCCCc---cHHHHHHHHhHHHHHHHHHHHHHhcCCCcccccc
Confidence 3589999999999999999999999 89999999999999998 99999999999999999999998888 368899
Q ss_pred HHHHHHHH-------cCCCCcCCCc
Q 008604 537 AFLAERAG-------KGATLSAPVE 554 (560)
Q Consensus 537 ~~l~~~~~-------~g~~f~~~~~ 554 (560)
+++++|++ +|+|||+|..
T Consensus 261 ~~~~~~v~~g~lG~Ksg~GfY~y~~ 285 (307)
T COG1250 261 PLLRKLVEAGRLGRKSGKGFYDYRG 285 (307)
T ss_pred HHHHHHHhcccccccCCCcceeccc
Confidence 99999995 8999999985
No 40
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.60 E-value=3.6e-15 Score=150.96 Aligned_cols=90 Identities=21% Similarity=0.325 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHHhCCCC--CCcH
Q 008604 460 KDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFF--KPCA 537 (560)
Q Consensus 460 ~~i~~r~l~~~~~ea~~~l~egv~~~~~diD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~~~--~p~~ 537 (560)
.++.||++.+++|||++++++|++ +|+|||.+|..|+|||. |||+++|.+|+|.+.+.++.++..+++.+ .|++
T Consensus 189 gfi~nRi~~~~~~ea~~l~~~g~a-~~~~iD~a~~~~~g~~~---Gp~~~~D~~Gld~~~~~~~~~~~~~~~~~~~~~~~ 264 (287)
T PRK08293 189 GYILNSLLVPFLSAALALWAKGVA-DPETIDKTWMIATGAPM---GPFGILDIVGLDTAYNITSNWAEATDDENAKKAAA 264 (287)
T ss_pred CHhHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhccCCCc---CHHHHHHHhchHHHHHHHHHHHHHhCCcccccchH
Confidence 589999999999999999999999 89999999999999998 99999999999999999999999888743 4899
Q ss_pred HHHHHHH-------cCCCCcCCC
Q 008604 538 FLAERAG-------KGATLSAPV 553 (560)
Q Consensus 538 ~l~~~~~-------~g~~f~~~~ 553 (560)
+|++|++ +|+|||+|.
T Consensus 265 ~l~~~v~~g~~G~k~g~Gfy~y~ 287 (287)
T PRK08293 265 LLKEYIDKGKLGVATGEGFYNYP 287 (287)
T ss_pred HHHHHHHCCCCcccCCCccccCc
Confidence 9999995 799999994
No 41
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.60 E-value=2.9e-15 Score=151.95 Aligned_cols=89 Identities=25% Similarity=0.224 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHHhCC-CCCCcHH
Q 008604 460 KDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGE-FFKPCAF 538 (560)
Q Consensus 460 ~~i~~r~l~~~~~ea~~~l~egv~~~~~diD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~~~ 538 (560)
-.+.||++.+++|||+++++||++ +++|||.+|+.++|||. |||+++|.+|++.+.+.++.+++.+++ +|.|+++
T Consensus 189 gfv~nRl~~~~~~ea~~~~~~g~a-~~~~iD~~~~~~~g~~~---Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~~~~ 264 (291)
T PRK06035 189 GFFTTRFIEGWLLEAIRSFEIGIA-TIKDIDEMCKLAFGFPM---GPFELMDIIGIDTVYHIAEYLYEETGDPQFIPPNS 264 (291)
T ss_pred CeeHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHhhcCCCcc---CHHHHHHHhhHHHHHHHHHHHHHHcCCCcCCccHH
Confidence 479999999999999999999999 89999999999999998 999999999999999999999998987 7899999
Q ss_pred HHHHHH-------c-----CCCCcCC
Q 008604 539 LAERAG-------K-----GATLSAP 552 (560)
Q Consensus 539 l~~~~~-------~-----g~~f~~~ 552 (560)
|++|++ + |+|||+|
T Consensus 265 l~~~v~~g~~G~k~~~~~~g~Gfy~y 290 (291)
T PRK06035 265 LKQMVLNGYVGDKKVKYGSKGGWFDY 290 (291)
T ss_pred HHHHHHCCCCcCCCCCCCCCceeeec
Confidence 999995 6 8999998
No 42
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=99.59 E-value=5.8e-14 Score=136.24 Aligned_cols=188 Identities=20% Similarity=0.227 Sum_probs=137.2
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 008604 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (560)
Q Consensus 146 ~~~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (560)
..++|++||+|.||.+|+.+|.++||+|++|||+.++.+.. .+.|... ..+..|..+
T Consensus 34 s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f-----------~~~Ga~v------------~~sPaeVae 90 (327)
T KOG0409|consen 34 SKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEF-----------QEAGARV------------ANSPAEVAE 90 (327)
T ss_pred ccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHH-----------HHhchhh------------hCCHHHHHh
Confidence 47899999999999999999999999999999999887653 3455321 123346678
Q ss_pred CCCEEEEeccCChHHHHHHHHH--HHhhcCCCceeeccCCcccH---HHHHhhccCCCcEeecccC-CCCCCC------C
Q 008604 226 DVDMVIEAIIENVSLKQQIFAD--LEKYCPPHCILASNTSTIDL---NLIGERTYSKDRIVGAHFF-SPAHVM------P 293 (560)
Q Consensus 226 ~aDlVIeav~e~~~~k~~~~~~--l~~~~~~~~ii~sntSsl~i---~~la~~~~~~~r~~g~hf~-~P~~~~------~ 293 (560)
+||+||.+||...+++..++.. +.+..+++.......||+.+ .+|++.+.+. +..|. .|++.. -
T Consensus 91 ~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~----~~~~vDAPVSGg~~~A~~G 166 (327)
T KOG0409|consen 91 DSDVVITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNK----GGRFVDAPVSGGVKGAEEG 166 (327)
T ss_pred hcCEEEEEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhC----CCeEEeccccCCchhhhcC
Confidence 9999999999999999988875 33333343332124444443 4777766432 44454 366532 2
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCceEEecC-ccc---cchhchHHHH----HHHHHHHHH-cCCCHHHHHHHHH
Q 008604 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTG---FAVNRMFFPY----TQAAFLLVE-RGTDLYLIDRAIT 362 (560)
Q Consensus 294 lvEiv~g~~t~~e~~~~~~~l~~~lGk~~i~v~d-~~G---~i~nri~~~~----~~ea~~l~~-~G~~~~dID~a~~ 362 (560)
.+.++.| .++++++++.++++.+||+.+.++. ..| .+.|+++.+. +.|++.+.+ .|+++..+-.++.
T Consensus 167 ~Ltimag--Gde~~~~~~~~~~~~mGk~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln 242 (327)
T KOG0409|consen 167 TLTIMAG--GDEALFEAASPVFKLMGKNVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDAKKLLEILN 242 (327)
T ss_pred eEEEEec--CcHHHHHHHHHHHHHhcceEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 3445554 5899999999999999999999975 344 4788887754 588888875 6889998888887
No 43
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.57 E-value=1e-14 Score=148.66 Aligned_cols=95 Identities=27% Similarity=0.291 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHHhCC-CCCCcHH
Q 008604 460 KDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGE-FFKPCAF 538 (560)
Q Consensus 460 ~~i~~r~l~~~~~ea~~~l~egv~~~~~diD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~-~~~p~~~ 538 (560)
..+.||++.++++||+.|+++|++ ++++||.++..|+|||++++|||.++|.+|++.+.+.++.+++.+++ +|.|+++
T Consensus 183 Gfi~nri~~~~l~EAl~l~e~g~~-~~e~iD~a~~~g~G~~~~~~Gpf~~~D~~Gld~~~~~~~~l~~~~~~~~~~p~~~ 261 (314)
T PRK08269 183 GYIVPRIQALAMNEAARMVEEGVA-SAEDIDKAIRTGFGLRFAVLGLLEFIDWGGCDILYYASRYLAGEIGPDRFAPPAI 261 (314)
T ss_pred CcchHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCccCcCHHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCCHH
Confidence 368999999999999999999998 89999999999999999899999999999999999999999998887 8999999
Q ss_pred HHHHHH-------cCCCCcCCCcc
Q 008604 539 LAERAG-------KGATLSAPVEE 555 (560)
Q Consensus 539 l~~~~~-------~g~~f~~~~~~ 555 (560)
|++|++ +|+|||+|.+.
T Consensus 262 l~~~v~~g~~G~ksG~GfY~y~~~ 285 (314)
T PRK08269 262 VVRNMEEGRDGLRTGAGFYDYAGV 285 (314)
T ss_pred HHHHHHCCCCcccCCCcceeCCCC
Confidence 999995 79999999653
No 44
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.56 E-value=2.9e-13 Score=141.57 Aligned_cols=171 Identities=21% Similarity=0.235 Sum_probs=122.9
Q ss_pred cceEEEEEc-CccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc
Q 008604 146 RVKKVAILG-GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (560)
Q Consensus 146 ~~~~V~VIG-~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 224 (560)
.+++|+||| +|.||.++|..|..+|++|++||+++.. + . .+.+
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~~---------------------~---~------------~~~~ 140 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDWD---------------------R---A------------EDIL 140 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcch---------------------h---H------------HHHH
Confidence 468999998 8999999999999999999999986310 0 0 0235
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCc--ccHHHHHhhccCCCcEeecccCCCCCCCCeEE--EEeC
Q 008604 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTYSKDRIVGAHFFSPAHVMPLLE--IVRT 300 (560)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSs--l~i~~la~~~~~~~r~~g~hf~~P~~~~~lvE--iv~g 300 (560)
.+||+||+|+|++. ...+++++.+ +++++||++++|+ .++..+..... .+|+|.||++++....+.. ++..
T Consensus 141 ~~aDlVilavP~~~--~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~--~~fvg~HPm~G~~~~~~~~~~vv~~ 215 (374)
T PRK11199 141 ADAGMVIVSVPIHL--TEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS--GPVLGLHPMFGPDVGSLAKQVVVVC 215 (374)
T ss_pred hcCCEEEEeCcHHH--HHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhCC--CCEEeeCCCCCCCCcccCCCEEEEc
Confidence 68999999999764 5788888888 8999999998885 34667766543 3699999998765543333 4556
Q ss_pred CCCcHHHHHHHHHHHHhcCCceEEecC-ccccchhchH-HHH---HHHHHHHHHcCCCHHHH
Q 008604 301 NQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGFAVNRMF-FPY---TQAAFLLVERGTDLYLI 357 (560)
Q Consensus 301 ~~t~~e~~~~~~~l~~~lGk~~i~v~d-~~G~i~nri~-~~~---~~ea~~l~~~G~~~~dI 357 (560)
+.++++.++.+.+++..+|..++.++. ....++..+. .+. +.++..+.+.+.+.+++
T Consensus 216 ~~~~~~~~~~~~~l~~~lG~~v~~~~~~~HD~~~a~vshLpH~~a~al~~~l~~~~~~~~~~ 277 (374)
T PRK11199 216 DGRQPEAYQWLLEQIQVWGARLHRISAVEHDQNMAFIQALRHFATFAYGLHLAKENVDLEQL 277 (374)
T ss_pred CCCCchHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 667888999999999999999999863 3333322221 122 23444444555555553
No 45
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.52 E-value=4.2e-14 Score=144.98 Aligned_cols=96 Identities=20% Similarity=0.148 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCcHHH
Q 008604 460 KDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFL 539 (560)
Q Consensus 460 ~~i~~r~l~~~~~ea~~~l~egv~~~~~diD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l 539 (560)
-.+.||++.++++||+.++++|++ +|++||.++..|+|||+++.|||+++|.+|++.+.+.+..+++.++++|.|+++|
T Consensus 184 G~i~nr~~~~~~~Ea~~l~~~g~~-~~~~id~~~~~~~g~~~~~~Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~~~~l 262 (311)
T PRK06130 184 GFIANRIQHALAREAISLLEKGVA-SAEDIDEVVKWSLGIRLALTGPLEQRDMNGLDVHLAVASYLYQDLENRTTPSPLL 262 (311)
T ss_pred CcHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhcCCCCccCCCHHHHhhhhccchHHHHHHHHHHhcCCcCCCCHHH
Confidence 359999999999999999999999 8999999999999999999999999999999999999999999898899999999
Q ss_pred HHHH-------HcCCCCcCCCccc
Q 008604 540 AERA-------GKGATLSAPVEEA 556 (560)
Q Consensus 540 ~~~~-------~~g~~f~~~~~~~ 556 (560)
++|+ ++|+|||+|.++.
T Consensus 263 ~~~~~~g~~G~~~g~gfy~y~~~~ 286 (311)
T PRK06130 263 EEKVEAGELGAKSGQGFYAWPPER 286 (311)
T ss_pred HHHHHcCCccccCCCcCccCCCCC
Confidence 9999 5899999997554
No 46
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.52 E-value=3.5e-13 Score=136.92 Aligned_cols=183 Identities=18% Similarity=0.214 Sum_probs=130.5
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (560)
++|+|||+|.||.+||..|+++|++|++||+++++++... +.|. ....+. +.+.+
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~-----------~~g~-------------~~~~s~~~~~~~ 57 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALV-----------DKGA-------------TPAASPAQAAAG 57 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HcCC-------------cccCCHHHHHhc
Confidence 5899999999999999999999999999999998876432 2221 122333 45789
Q ss_pred CCEEEEeccCChHHHHHHHH--HHHhhcCCCceeeccCCcccHH---HHHhhccCCCcEeecccC-CCCCC-------CC
Q 008604 227 VDMVIEAIIENVSLKQQIFA--DLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFF-SPAHV-------MP 293 (560)
Q Consensus 227 aDlVIeav~e~~~~k~~~~~--~l~~~~~~~~ii~sntSsl~i~---~la~~~~~~~r~~g~hf~-~P~~~-------~~ 293 (560)
||+||.|+|++..++..++. .+.+.++++++++ ++||.++. ++++.+.. .|.+|. .|+.. ..
T Consensus 58 aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~g~lvi-d~sT~~p~~~~~l~~~l~~----~g~~~ldapV~g~~~~a~~g~ 132 (296)
T PRK15461 58 AEFVITMLPNGDLVRSVLFGENGVCEGLSRDALVI-DMSTIHPLQTDKLIADMQA----KGFSMMDVPVGRTSDNAITGT 132 (296)
T ss_pred CCEEEEecCCHHHHHHHHcCcccHhhcCCCCCEEE-ECCCCCHHHHHHHHHHHHH----cCCcEEEccCCCCHHHHHhCc
Confidence 99999999988777766653 3566677888774 66776654 44444321 244444 24432 34
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCceEEecC-ccc---cchhchHH----HHHHHHHHHHH-cCCCHHHHHHHHH
Q 008604 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTG---FAVNRMFF----PYTQAAFLLVE-RGTDLYLIDRAIT 362 (560)
Q Consensus 294 lvEiv~g~~t~~e~~~~~~~l~~~lGk~~i~v~d-~~G---~i~nri~~----~~~~ea~~l~~-~G~~~~dID~a~~ 362 (560)
++-++.| +++.++.++++++.+|+..+++++ ..| .++|+++. ..+.|++.+.+ .|++++.+-.++.
T Consensus 133 l~~~~gg---~~~~~~~~~p~l~~~g~~~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l~ 207 (296)
T PRK15461 133 LLLLAGG---TAEQVERATPILMAMGNELINAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVMS 207 (296)
T ss_pred EEEEECC---CHHHHHHHHHHHHHHcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 5545555 789999999999999999999886 233 35666554 33588888875 6899999877776
No 47
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.50 E-value=1.4e-12 Score=130.58 Aligned_cols=186 Identities=18% Similarity=0.138 Sum_probs=132.7
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC----cEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-
Q 008604 148 KKVAILGGGLMGSGIATALILSNY----PVILK-EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY- 221 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~----~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~- 221 (560)
+||+|||+|.||.+|+..|+++|+ +|+++ |+++++.+... +.| +....+.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~-----------~~g-------------~~~~~~~~ 56 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQ-----------SLG-------------VKTAASNT 56 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHH-----------HcC-------------CEEeCChH
Confidence 479999999999999999999998 89999 99988765321 222 1222333
Q ss_pred ccccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccHHHHHhhccCCCcEeecccCCCCCCCCeEE-EEeC
Q 008604 222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLE-IVRT 300 (560)
Q Consensus 222 ~~~~~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~~la~~~~~~~r~~g~hf~~P~~~~~lvE-iv~g 300 (560)
+.+.+||+||.|++ .....+++.++.+.+.++++|+|.+++++++.+....... +++..++..|.....-+. ++.+
T Consensus 57 e~~~~aDvVil~v~--~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~~~~~~-~vvr~mP~~~~~~~~~~~~l~~~ 133 (266)
T PLN02688 57 EVVKSSDVIILAVK--PQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQEWAGGR-RVVRVMPNTPCLVGEAASVMSLG 133 (266)
T ss_pred HHHhcCCEEEEEEC--cHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHHHHcCCC-CEEEECCCcHHHHhCceEEEEeC
Confidence 45678999999995 4456777788888888889888888999999888766543 688877777765544444 5567
Q ss_pred CCCcHHHHHHHHHHHHhcCCceEEecCc-----cccc--hhchHHHHHHHHHH--HHHcCCCHHHHHHHHH
Q 008604 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNC-----TGFA--VNRMFFPYTQAAFL--LVERGTDLYLIDRAIT 362 (560)
Q Consensus 301 ~~t~~e~~~~~~~l~~~lGk~~i~v~d~-----~G~i--~nri~~~~~~ea~~--l~~~G~~~~dID~a~~ 362 (560)
..++++..+.+++++..+|+ ++++++. -|.. ...++ ..+.+++. ....|+++++.-.++.
T Consensus 134 ~~~~~~~~~~v~~l~~~~G~-~~~~~e~~~d~~~~~~g~g~a~~-~~~~~a~~ea~~~~Gl~~~~a~~~~~ 202 (266)
T PLN02688 134 PAATADDRDLVATLFGAVGK-IWVVDEKLLDAVTGLSGSGPAYI-FLAIEALADGGVAAGLPRDVALSLAA 202 (266)
T ss_pred CCCCHHHHHHHHHHHHhCCC-EEEeCHHHcchhHhhhcCHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 77899999999999999999 7776421 0111 11112 22222221 3457899999888876
No 48
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=99.48 E-value=6.2e-13 Score=134.69 Aligned_cols=182 Identities=20% Similarity=0.218 Sum_probs=132.1
Q ss_pred EEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccCCCEE
Q 008604 152 ILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMV 230 (560)
Q Consensus 152 VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlV 230 (560)
|||+|.||.+||..|+++|++|++||+++++.+... +.|. ..+.+. +.+.+||+|
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~g~-------------~~~~s~~~~~~~advV 56 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAV-----------AAGA-------------QAAASPAEAAEGADRV 56 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHH-----------HcCC-------------eecCCHHHHHhcCCEE
Confidence 689999999999999999999999999998776432 2231 123333 457899999
Q ss_pred EEeccCChHHHHHHH--HHHHhhcCCCceeeccCCcccHH---HHHhhccCCCcEeecccCC-CCCC-------CCeEEE
Q 008604 231 IEAIIENVSLKQQIF--ADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFFS-PAHV-------MPLLEI 297 (560)
Q Consensus 231 Ieav~e~~~~k~~~~--~~l~~~~~~~~ii~sntSsl~i~---~la~~~~~~~r~~g~hf~~-P~~~-------~~lvEi 297 (560)
|.|||.+..++..++ ..+.+.++++++++ ++||+++. ++++.+.. .|.+|.. |+.. ..+.-+
T Consensus 57 il~vp~~~~~~~v~~g~~~l~~~~~~g~~vi-d~st~~p~~~~~~~~~~~~----~g~~~vdaPv~Gg~~~a~~g~l~~~ 131 (288)
T TIGR01692 57 ITMLPAGQHVISVYSGDEGILPKVAKGSLLI-DCSTIDPDSARKLAELAAA----HGAVFMDAPVSGGVGGARAGTLTFM 131 (288)
T ss_pred EEeCCChHHHHHHHcCcchHhhcCCCCCEEE-ECCCCCHHHHHHHHHHHHH----cCCcEEECCCCCCHHHHhhCcEEEE
Confidence 999998766655443 56777778888775 55576665 33333321 3666653 5542 355666
Q ss_pred EeCCCCcHHHHHHHHHHHHhcCCceEEecC-cccc---chhchHHH----HHHHHHHHHH-cCCCHHHHHHHHH-hcC
Q 008604 298 VRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGF---AVNRMFFP----YTQAAFLLVE-RGTDLYLIDRAIT-KFG 365 (560)
Q Consensus 298 v~g~~t~~e~~~~~~~l~~~lGk~~i~v~d-~~G~---i~nri~~~----~~~ea~~l~~-~G~~~~dID~a~~-~~G 365 (560)
+.| +++.++.+++++..+|+..+++++ ..|. ++|+++.. .+.|++.+.+ .|++++++..++. +.|
T Consensus 132 ~gg---~~~~~~~~~~~l~~~g~~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~ 206 (288)
T TIGR01692 132 VGG---VAEEFAAAEPVLGPMGRNIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSG 206 (288)
T ss_pred ECC---CHHHHHHHHHHHHHhcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCc
Confidence 666 678899999999999999999986 4554 67777654 3689998885 6899999999998 554
No 49
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=99.47 E-value=1e-13 Score=156.30 Aligned_cols=105 Identities=21% Similarity=0.253 Sum_probs=94.1
Q ss_pred HHHHHHHhcCCceEEecCccccchhchHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCc---cHHHHHHHhhhHHHH
Q 008604 310 DLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT--DLYLIDRAIT-KFGMPM---GPFRLADLVGFGVAI 383 (560)
Q Consensus 310 ~~~~l~~~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~--~~~dID~a~~-~~G~~~---GPf~~~D~~Gld~~~ 383 (560)
.+..++..+++.|+.+.+.+|||+||++.++++|+++++++|+ +++|||.+|. |+|||+ |||+++|.+|+|.+.
T Consensus 626 ~v~~~~~~~~k~p~~~~~~~g~I~~Rll~~~~nEA~rlLeEGV~a~~~DID~a~~~G~GfP~~~gGP~~~aD~~Gld~v~ 705 (737)
T TIGR02441 626 DADEILAQYKLPPKAEVSSPEDIQIRLVSRFVNEAVLCLEEGILASPSEGDIGAVFGLGFPPFLGGPFRFVDLYGADKLV 705 (737)
T ss_pred HHHHHHHHhccCcccccCChHHHHHHHHHHHHHHHHHHhhcCccCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHHH
Confidence 3445556678777766678999999999999999999999997 9999999999 999996 999999999999999
Q ss_pred HHHHHHHHhCCCCCcccchHHHHHHC-CCCccccCceee
Q 008604 384 ATGMQFIENFPERTYKSMIIPIMQED-KRAGETTRKGFY 421 (560)
Q Consensus 384 ~~~~~l~~~~~~~~~~~~~l~~~v~~-G~~G~k~g~GfY 421 (560)
++++.+++.+++++.|+++|.+|+++ | +.||
T Consensus 706 ~~~~~l~~~~g~~~~p~~lL~~~~~~~g-------~~f~ 737 (737)
T TIGR02441 706 DKMEKYAAAYGVQFTPCQLLLDHAKSPG-------KKFY 737 (737)
T ss_pred HHHHHHHHHhCCCcCCCHHHHHHHHhcC-------CCCC
Confidence 99999999999888899999999987 6 5676
No 50
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.47 E-value=1.4e-13 Score=154.90 Aligned_cols=91 Identities=26% Similarity=0.273 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCcHH
Q 008604 459 EKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAF 538 (560)
Q Consensus 459 ~~~i~~r~l~~~~~ea~~~l~egv~~~~~diD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~ 538 (560)
.-+|.||++.+++|||++++++|+ +++|||.+|. ++|||+ |||+++|.+|+|.+++.++.+++.+|++|.|+++
T Consensus 487 pGfi~nRl~~~~~~Ea~~l~~~G~--~~~dID~a~~-~~G~p~---GPf~l~D~vGld~~~~i~~~l~~~~~~~~~~~~~ 560 (699)
T TIGR02440 487 AGFYVNRILAPYMNEAARLLLEGE--PVEHIDKALV-KFGFPV---GPITLLDEVGIDVGAKISPILEAELGERFKAPAV 560 (699)
T ss_pred cchHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHH-HcCCCc---CHHHHHHHhchHHHHHHHHHHHHhcCCCCCCcHH
Confidence 358999999999999999999995 7999999996 999998 9999999999999999999999999999999999
Q ss_pred HHHHHH-------cCCCCcCCCcc
Q 008604 539 LAERAG-------KGATLSAPVEE 555 (560)
Q Consensus 539 l~~~~~-------~g~~f~~~~~~ 555 (560)
|++|++ +|+|||+|.+.
T Consensus 561 l~~~v~~G~lG~ksg~GfY~y~~~ 584 (699)
T TIGR02440 561 FDKLLSDDRKGRKNGKGFYLYGAA 584 (699)
T ss_pred HHHHHHCCCCcccCCcEEEeCCCC
Confidence 999995 78999999754
No 51
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.47 E-value=9e-13 Score=133.43 Aligned_cols=182 Identities=15% Similarity=0.241 Sum_probs=126.7
Q ss_pred EEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCC
Q 008604 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVD 228 (560)
Q Consensus 149 ~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD 228 (560)
+|+|||+|.||.+||..|.++|++|++||+++. .+.. .+.|.. ...+..+.+.+||
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~-----------~~~g~~------------~~~s~~~~~~~ad 57 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADEL-----------LSLGAV------------SVETARQVTEASD 57 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHH-----------HHcCCe------------ecCCHHHHHhcCC
Confidence 799999999999999999999999999999874 2221 122321 1112224568999
Q ss_pred EEEEeccCChHHHHHHHHH--HHhhcCCCceeeccCCcccHH---HHHhhccCCCcEeecccCC-CCC-------CCCeE
Q 008604 229 MVIEAIIENVSLKQQIFAD--LEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFFS-PAH-------VMPLL 295 (560)
Q Consensus 229 lVIeav~e~~~~k~~~~~~--l~~~~~~~~ii~sntSsl~i~---~la~~~~~~~r~~g~hf~~-P~~-------~~~lv 295 (560)
+||.|+|++..++..++.. +.+.+.++.+++ ++||+++. ++++.+.. .|.+|.. |+. ...|.
T Consensus 58 vVi~~v~~~~~v~~v~~~~~g~~~~~~~g~ivv-d~sT~~p~~~~~~~~~~~~----~G~~~vdaPVsGg~~~a~~g~l~ 132 (292)
T PRK15059 58 IIFIMVPDTPQVEEVLFGENGCTKASLKGKTIV-DMSSISPIETKRFARQVNE----LGGDYLDAPVSGGEIGAREGTLS 132 (292)
T ss_pred EEEEeCCChHHHHHHHcCCcchhccCCCCCEEE-ECCCCCHHHHHHHHHHHHH----cCCCEEEecCCCCHHHHhcCcEE
Confidence 9999999987777766543 555567777765 55666654 44444421 1444432 332 34555
Q ss_pred EEEeCCCCcHHHHHHHHHHHHhcCCceEEecCc-cc---cchhchHHHH----HHHHHHHHH-cCCCHHHHHHHHH
Q 008604 296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC-TG---FAVNRMFFPY----TQAAFLLVE-RGTDLYLIDRAIT 362 (560)
Q Consensus 296 Eiv~g~~t~~e~~~~~~~l~~~lGk~~i~v~d~-~G---~i~nri~~~~----~~ea~~l~~-~G~~~~dID~a~~ 362 (560)
-++.| +++.++.++++++.+|+..+++++. .| .++|+++... +.|++.+.+ .|++++.+-.++.
T Consensus 133 ~~~gG---~~~~~~~~~p~l~~~g~~~~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l~ 205 (292)
T PRK15059 133 IMVGG---DEAVFERVKPLFELLGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQALM 205 (292)
T ss_pred EEEcC---CHHHHHHHHHHHHHHcCCcEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 56655 7899999999999999999999862 33 3566766542 588888875 6899998888876
No 52
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.46 E-value=1.8e-13 Score=154.33 Aligned_cols=89 Identities=26% Similarity=0.297 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCcHHH
Q 008604 460 KDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFFKPCAFL 539 (560)
Q Consensus 460 ~~i~~r~l~~~~~ea~~~l~egv~~~~~diD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~~~~p~~~l 539 (560)
-+|.||++.+++|||+++++||+ +++|||.+++ ++|||+ |||+++|.+|++.+.++++.+++.++++|.|+++|
T Consensus 493 Gfi~nRl~~~~~~EA~~lv~eGv--~~~dID~a~~-~~G~p~---GPf~~~D~~Gld~~~~i~~~l~~~~~~~~~~~~~l 566 (708)
T PRK11154 493 GFYVNRILAPYINEAARLLLEGE--PIEHIDAALV-KFGFPV---GPITLLDEVGIDVGTKIIPILEAALGERFSAPAAF 566 (708)
T ss_pred cHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHH-HcCCCC---CHHHHHHHhhhHHHHHHHHHHHHHcCCCCCCCHHH
Confidence 47999999999999999999997 5999999998 899998 99999999999999999999999899999999999
Q ss_pred HHHHH-------cCCCCcCCCc
Q 008604 540 AERAG-------KGATLSAPVE 554 (560)
Q Consensus 540 ~~~~~-------~g~~f~~~~~ 554 (560)
++|++ +|+|||+|.+
T Consensus 567 ~~~v~~g~~G~k~g~GfY~y~~ 588 (708)
T PRK11154 567 DKLLNDDRKGRKNGRGFYLYGQ 588 (708)
T ss_pred HHHHHCCCCcccCCceEEECCC
Confidence 99995 7999999975
No 53
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.46 E-value=3.3e-13 Score=124.88 Aligned_cols=147 Identities=20% Similarity=0.249 Sum_probs=101.8
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 008604 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (560)
Q Consensus 147 ~~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (560)
|++|+|||+|.||++||.+|+++|++|++||+++++.++.. +.| .+...+. +.+.
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~-----------~~g-------------~~~~~s~~e~~~ 56 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALA-----------EAG-------------AEVADSPAEAAE 56 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHH-----------HTT-------------EEEESSHHHHHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhH-----------Hhh-------------hhhhhhhhhHhh
Confidence 57999999999999999999999999999999998877543 222 2334444 5578
Q ss_pred CCCEEEEeccCChHHHHHHHH-HHHhhcCCCceeeccCCcccHH---HHHhhccCCCcEeecccCC-CCC-------CCC
Q 008604 226 DVDMVIEAIIENVSLKQQIFA-DLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFFS-PAH-------VMP 293 (560)
Q Consensus 226 ~aDlVIeav~e~~~~k~~~~~-~l~~~~~~~~ii~sntSsl~i~---~la~~~~~~~r~~g~hf~~-P~~-------~~~ 293 (560)
+||+||.|++++.+++..++. .+.+.+.++.+++ ++||.+++ ++++.+.. .|.||.. |+. ..+
T Consensus 57 ~~dvvi~~v~~~~~v~~v~~~~~i~~~l~~g~iii-d~sT~~p~~~~~~~~~~~~----~g~~~vdapV~Gg~~~a~~g~ 131 (163)
T PF03446_consen 57 QADVVILCVPDDDAVEAVLFGENILAGLRPGKIII-DMSTISPETSRELAERLAA----KGVRYVDAPVSGGPPGAEEGT 131 (163)
T ss_dssp HBSEEEE-SSSHHHHHHHHHCTTHGGGS-TTEEEE-E-SS--HHHHHHHHHHHHH----TTEEEEEEEEESHHHHHHHTT
T ss_pred cccceEeecccchhhhhhhhhhHHhhccccceEEE-ecCCcchhhhhhhhhhhhh----ccceeeeeeeecccccccccc
Confidence 899999999987776555443 1778888888776 55555554 44444421 3566653 443 356
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCceEEe
Q 008604 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVV 325 (560)
Q Consensus 294 lvEiv~g~~t~~e~~~~~~~l~~~lGk~~i~v 325 (560)
+.-++.| +++.++.++++++.+++..+++
T Consensus 132 l~~~~gG---~~~~~~~~~~~l~~~~~~v~~~ 160 (163)
T PF03446_consen 132 LTIMVGG---DEEAFERVRPLLEAMGKNVYHY 160 (163)
T ss_dssp EEEEEES----HHHHHHHHHHHHHHEEEEEEE
T ss_pred eEEEccC---CHHHHHHHHHHHHHHhCCceee
Confidence 7778888 7899999999999999877743
No 54
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.44 E-value=2.7e-12 Score=137.34 Aligned_cols=190 Identities=16% Similarity=0.200 Sum_probs=128.4
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc---
Q 008604 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE--- 222 (560)
Q Consensus 146 ~~~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~--- 222 (560)
.+++|+|||+|.||.+||.+|+++|++|++||+++++.+...+.. ...|.. .+....+.+
T Consensus 5 ~~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~-------~~~Ga~----------~~~~a~s~~e~v 67 (493)
T PLN02350 5 ALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA-------KKEGNL----------PLYGFKDPEDFV 67 (493)
T ss_pred CCCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhh-------hhcCCc----------ccccCCCHHHHH
Confidence 356899999999999999999999999999999999877543210 001210 011222332
Q ss_pred -cccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccHH---HHHhhccCCCcEeecccCC-CCC-------
Q 008604 223 -SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFFS-PAH------- 290 (560)
Q Consensus 223 -~~~~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~---~la~~~~~~~r~~g~hf~~-P~~------- 290 (560)
.++.||+||.||+.+..+...+ ..+.+.+.++.||+. +|+..+. ++++.+. -.|+||+. |+.
T Consensus 68 ~~l~~~dvIi~~v~~~~aV~~Vi-~gl~~~l~~G~iiID-~sT~~~~~t~~~~~~l~----~~Gi~fldapVSGG~~gA~ 141 (493)
T PLN02350 68 LSIQKPRSVIILVKAGAPVDQTI-KALSEYMEPGDCIID-GGNEWYENTERRIKEAA----EKGLLYLGMGVSGGEEGAR 141 (493)
T ss_pred hcCCCCCEEEEECCCcHHHHHHH-HHHHhhcCCCCEEEE-CCCCCHHHHHHHHHHHH----HcCCeEEeCCCcCCHHHhc
Confidence 2445999999999887776554 778888888887764 3444332 3444332 23667663 554
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHHHHHhcCCc------eEEecC-cccc---chhchHH----HHHHHHHHHHHc--CCCH
Q 008604 291 VMPLLEIVRTNQTSPQVIVDLLDIGKKIKKT------PIVVGN-CTGF---AVNRMFF----PYTQAAFLLVER--GTDL 354 (560)
Q Consensus 291 ~~~lvEiv~g~~t~~e~~~~~~~l~~~lGk~------~i~v~d-~~G~---i~nri~~----~~~~ea~~l~~~--G~~~ 354 (560)
..+ .-++.| ++++++.++++++.++.. .+++++ ..|. ++|+.+. ..+.|++.+.+. |+++
T Consensus 142 ~G~-~im~GG---~~~a~~~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~ 217 (493)
T PLN02350 142 NGP-SLMPGG---SFEAYKNIEDILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSN 217 (493)
T ss_pred CCC-eEEecC---CHHHHHHHHHHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCH
Confidence 345 334444 889999999999999853 778876 3332 4555543 236899988864 8899
Q ss_pred HHHHHHHH
Q 008604 355 YLIDRAIT 362 (560)
Q Consensus 355 ~dID~a~~ 362 (560)
+++-.++.
T Consensus 218 ~~l~~vf~ 225 (493)
T PLN02350 218 EELAEVFA 225 (493)
T ss_pred HHHHHHHH
Confidence 99998854
No 55
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.43 E-value=1.6e-11 Score=123.58 Aligned_cols=152 Identities=18% Similarity=0.223 Sum_probs=109.7
Q ss_pred EEEEEcCccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 008604 149 KVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (560)
Q Consensus 149 ~V~VIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (560)
+|+|||+|.||.++|..|.++|+ +|+++|++++.++.+. +.|..+ ...+.+.+.+
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~-----------~~g~~~------------~~~~~~~~~~ 58 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKAL-----------ELGLVD------------EIVSFEELKK 58 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH-----------HCCCCc------------ccCCHHHHhc
Confidence 79999999999999999999996 7899999998766432 223211 1123333456
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCccc-HHHHHhhccCCCcEeecccCC------CCC------CCC
Q 008604 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID-LNLIGERTYSKDRIVGAHFFS------PAH------VMP 293 (560)
Q Consensus 227 aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~-i~~la~~~~~~~r~~g~hf~~------P~~------~~~ 293 (560)
||+||.|+|.+ ...+++.++.+ ++++++|++.+|+.+ +.+..... .+.+|++.||+. |.. ...
T Consensus 59 aD~Vilavp~~--~~~~~~~~l~~-l~~~~iv~d~gs~k~~i~~~~~~~-~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~ 134 (275)
T PRK08507 59 CDVIFLAIPVD--AIIEILPKLLD-IKENTTIIDLGSTKAKIIESVPKH-IRKNFIAAHPMAGTENSGPKAAIKGLYEGK 134 (275)
T ss_pred CCEEEEeCcHH--HHHHHHHHHhc-cCCCCEEEECccchHHHHHHHHHh-cCCCEEecCCcCcCchhhHHhccHHHhCCC
Confidence 99999999954 44567778877 888988876544322 22222211 235799999984 322 345
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCceEEecC
Q 008604 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (560)
Q Consensus 294 lvEiv~g~~t~~e~~~~~~~l~~~lGk~~i~v~d 327 (560)
.+.+++++.++++.++.+..+++.+|..++.++.
T Consensus 135 ~~il~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~ 168 (275)
T PRK08507 135 VVVLCDVEKSGEKHQERAKEIFSGLGMRIVYMDA 168 (275)
T ss_pred eEEEecCCCCCHHHHHHHHHHHHHhCCEEEEeCH
Confidence 6778888888999999999999999999998863
No 56
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=99.42 E-value=3.9e-14 Score=150.41 Aligned_cols=160 Identities=17% Similarity=0.139 Sum_probs=120.6
Q ss_pred EEEEEcCccchHHHHH--HH----HhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-
Q 008604 149 KVAILGGGLMGSGIAT--AL----ILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY- 221 (560)
Q Consensus 149 ~V~VIG~G~mG~~iA~--~l----~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~- 221 (560)
||+|||+|.||.+.+. .+ +.+|++|++||++++.++.....+...+. ... ...++..++|+
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~----~~~--------~~~~I~~ttD~~ 69 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVE----ELG--------APLKIEATTDRR 69 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHH----hcC--------CCeEEEEeCCHH
Confidence 7999999999998665 23 55689999999999988776554433322 111 11366777885
Q ss_pred ccccCCCEEEEecc----------CChHHHHHHHHHHHhhcCCCceeeccCCcccHHHHHhhccC--CCcEeecccCCCC
Q 008604 222 ESFKDVDMVIEAII----------ENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYS--KDRIVGAHFFSPA 289 (560)
Q Consensus 222 ~~~~~aDlVIeav~----------e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~~la~~~~~--~~r~~g~hf~~P~ 289 (560)
+++++||+||++++ |++.+|..+++++.+.+++++++.+|+|+..+.+++..+.+ | +++.+||+||+
T Consensus 70 eal~~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p-~a~~i~~tNPv 148 (423)
T cd05297 70 EALDGADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCP-DAWLLNYANPM 148 (423)
T ss_pred HHhcCCCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCC-CCEEEEcCChH
Confidence 67999999999998 46899999999999999999999999999999999988764 7 99999999998
Q ss_pred CCC-----CeEEEEeCCCCcHHHHHHHHHHHHhcCCce
Q 008604 290 HVM-----PLLEIVRTNQTSPQVIVDLLDIGKKIKKTP 322 (560)
Q Consensus 290 ~~~-----~lvEiv~g~~t~~e~~~~~~~l~~~lGk~~ 322 (560)
..+ +..+ ++.-.+...+......+.+.+|..+
T Consensus 149 ~i~t~~~~k~~~-~rviG~c~~~~~~~~~~a~~l~~~~ 185 (423)
T cd05297 149 AELTWALNRYTP-IKTVGLCHGVQGTAEQLAKLLGEPP 185 (423)
T ss_pred HHHHHHHHHhCC-CCEEEECCcHHHHHHHHHHHhCCCH
Confidence 654 3333 1211223335666667777777643
No 57
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.42 E-value=1.8e-11 Score=122.78 Aligned_cols=188 Identities=18% Similarity=0.185 Sum_probs=131.2
Q ss_pred ceEEEEEcCccchHHHHHHHHhCC---CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-c
Q 008604 147 VKKVAILGGGLMGSGIATALILSN---YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E 222 (560)
Q Consensus 147 ~~~V~VIG~G~mG~~iA~~l~~~G---~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 222 (560)
+++|+|||+|.||..++..+.++| ++|.++|++++..+...+.. | +..+.+. +
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~----------g-------------~~~~~~~~~ 58 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEY----------G-------------VRAATDNQE 58 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhc----------C-------------CeecCChHH
Confidence 468999999999999999999999 78999999988765432110 1 1122333 3
Q ss_pred cccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccHHHHHhhccCCCcEeecccCCCCCCCCeEE-EEeCC
Q 008604 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLE-IVRTN 301 (560)
Q Consensus 223 ~~~~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~~la~~~~~~~r~~g~hf~~P~~~~~lvE-iv~g~ 301 (560)
.+.+||+||.|++. ..-.++++++.+.+ +++|+|.+++++...+...+++..+++.+|+..|.....-+. ++++.
T Consensus 59 ~~~~advVil~v~~--~~~~~v~~~l~~~~--~~~vvs~~~gi~~~~l~~~~~~~~~iv~~~P~~p~~~~~~~~~i~~~~ 134 (267)
T PRK11880 59 AAQEADVVVLAVKP--QVMEEVLSELKGQL--DKLVVSIAAGVTLARLERLLGADLPVVRAMPNTPALVGAGMTALTANA 134 (267)
T ss_pred HHhcCCEEEEEcCH--HHHHHHHHHHHhhc--CCEEEEecCCCCHHHHHHhcCCCCcEEEecCCchHHHcCceEEEecCC
Confidence 46789999999973 34566777776665 467778888999998888776667899999988866554444 56777
Q ss_pred CCcHHHHHHHHHHHHhcCCceEEec-Cc--cccc-hh----chHHHHHHHHHHH-HHcCCCHHHHHHHHH
Q 008604 302 QTSPQVIVDLLDIGKKIKKTPIVVG-NC--TGFA-VN----RMFFPYTQAAFLL-VERGTDLYLIDRAIT 362 (560)
Q Consensus 302 ~t~~e~~~~~~~l~~~lGk~~i~v~-d~--~G~i-~n----ri~~~~~~ea~~l-~~~G~~~~dID~a~~ 362 (560)
.++++..+.+..++..+|..+ .+. +. .... .. ..+..++...... ...|+++++....+.
T Consensus 135 ~~~~~~~~~v~~l~~~lG~~~-~~~~e~~~d~~~a~~~~~pa~~~~~~~~~~~~~~~~Gl~~~~a~~~~~ 203 (267)
T PRK11880 135 LVSAEDRELVENLLSAFGKVV-WVDDEKQMDAVTAVSGSGPAYVFLFIEALADAGVKLGLPREQARKLAA 203 (267)
T ss_pred CCCHHHHHHHHHHHHhCCeEE-EECChHhcchHHHHhcChHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 889999999999999999744 444 21 1111 11 1222223333332 347888888776664
No 58
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.40 E-value=4.2e-12 Score=132.47 Aligned_cols=221 Identities=17% Similarity=0.181 Sum_probs=140.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (560)
++|+|||+|.||.+||..|.++|++|.+++++++..+... ....+..+ ..++++ +.+.+
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~---------a~~~~~~~-----------~~~~~~~~~~~~ 60 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLAR---------ALGFGVID-----------ELAADLQRAAAE 60 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHH---------HhcCCCCc-----------ccccCHHHHhcC
Confidence 4799999999999999999999999999999876543221 11122111 112333 45789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHh-hcCCCceeeccCCcc--cHHHHHhhccCCCcEeecccCCCCC------------C
Q 008604 227 VDMVIEAIIENVSLKQQIFADLEK-YCPPHCILASNTSTI--DLNLIGERTYSKDRIVGAHFFSPAH------------V 291 (560)
Q Consensus 227 aDlVIeav~e~~~~k~~~~~~l~~-~~~~~~ii~sntSsl--~i~~la~~~~~~~r~~g~hf~~P~~------------~ 291 (560)
||+||.|+|.+ ....+++++.+ .++++++|.+.+|.- .+..+.....+..+|+|.||+.... .
T Consensus 61 aDlVilavP~~--~~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~ 138 (359)
T PRK06545 61 ADLIVLAVPVD--ATAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHPMAGSHKSGVAAARADLFE 138 (359)
T ss_pred CCEEEEeCCHH--HHHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCCcCcCchhhHHHhcHHHHC
Confidence 99999999964 56788899887 478888886555442 2345555445678999999874321 2
Q ss_pred CCeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEec-CccccchhchHH--HHHHHHHHHHHcCCCHHHHHHHHHhcCCC-
Q 008604 292 MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRMFF--PYTQAAFLLVERGTDLYLIDRAITKFGMP- 367 (560)
Q Consensus 292 ~~lvEiv~g~~t~~e~~~~~~~l~~~lGk~~i~v~-d~~G~i~nri~~--~~~~ea~~l~~~G~~~~dID~a~~~~G~~- 367 (560)
....-+++++.++++.++.++.++..+|..++.+. +....++..+.. .++.+++ ....+.+..+.-. +.+-||.
T Consensus 139 g~~~il~~~~~~~~~~~~~v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~ia~al-~~~~~~~~~~~~~-la~~gfrd 216 (359)
T PRK06545 139 NAPWVLTPDDHTDPDAVAELKDLLSGTGAKFVVLDAEEHDRAVALVSHLPHILASSL-AARLAGEHPLALR-LAAGGFRD 216 (359)
T ss_pred CCcEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHhHHHhHhccHHHHHHHHH-HHhhccCchHHHh-hhcccccC
Confidence 33455788888999999999999999999998885 334444443322 2344443 1222222222111 1133443
Q ss_pred ------ccHHHHHHHhhhH--HHHHHHHHHHHh
Q 008604 368 ------MGPFRLADLVGFG--VAIATGMQFIEN 392 (560)
Q Consensus 368 ------~GPf~~~D~~Gld--~~~~~~~~l~~~ 392 (560)
.-|=.|.|.+--. .+...++.+...
T Consensus 217 ~tRia~~~p~~w~di~~~N~~~~~~~l~~~~~~ 249 (359)
T PRK06545 217 ITRIASSDPGMWRDILESNAEALLDALDEWIED 249 (359)
T ss_pred CccccCCCHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 2566777776532 344444444433
No 59
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.38 E-value=1.1e-12 Score=147.90 Aligned_cols=92 Identities=14% Similarity=0.157 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHHhCCC--CCCc
Q 008604 459 EKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEF--FKPC 536 (560)
Q Consensus 459 ~~~i~~r~l~~~~~ea~~~l~egv~~~~~diD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~~--~~p~ 536 (560)
.-+|.||++.+++|||++++++| + +++|||.+|..++|||. |||+++|.+|+|.+.+.++.++..++++ +.|+
T Consensus 495 pGfv~nRi~~~~~~ea~~lv~~G-a-~~e~ID~a~~~~~G~~~---GP~~~~D~~Gld~~~~~~~~~~~~~~~~~~~~~~ 569 (715)
T PRK11730 495 PGFFVNRVLFPYFAGFSQLLRDG-A-DFRQIDKVMEKQFGWPM---GPAYLLDVVGIDTAHHAQAVMAEGFPDRMKKDYR 569 (715)
T ss_pred CchhHHHHHHHHHHHHHHHHHcC-C-CHHHHHHHHHhhCCCcc---CHHHHHHhhchHHHHHHHHHHHHhcCCccccchh
Confidence 35899999999999999999999 6 89999999999999998 9999999999999999999999888875 3467
Q ss_pred HHHHHHHH-------cCCCCcCCCcc
Q 008604 537 AFLAERAG-------KGATLSAPVEE 555 (560)
Q Consensus 537 ~~l~~~~~-------~g~~f~~~~~~ 555 (560)
++|++|++ +|+|||+|++.
T Consensus 570 ~~l~~~v~~G~~G~k~g~GfY~y~~~ 595 (715)
T PRK11730 570 DAIDVLFEAKRFGQKNGKGFYRYEED 595 (715)
T ss_pred HHHHHHHHCCCCccccCCEeEecccC
Confidence 99999995 79999999743
No 60
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.38 E-value=1e-11 Score=132.72 Aligned_cols=189 Identities=15% Similarity=0.156 Sum_probs=130.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc----
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES---- 223 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~---- 223 (560)
.+|+|||+|.||.+||..|+++|++|++||+++++.+...+.- ...|. .+..+.++++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~-------~~~g~-----------~i~~~~s~~e~v~~ 63 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKA-------KEGNT-----------RVKGYHTLEELVNS 63 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhh-------hhcCC-----------cceecCCHHHHHhc
Confidence 4799999999999999999999999999999999877643210 01121 1223334432
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccHH--HHHhhccCCCcEeecccCC-CCCC-------CC
Q 008604 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN--LIGERTYSKDRIVGAHFFS-PAHV-------MP 293 (560)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~--~la~~~~~~~r~~g~hf~~-P~~~-------~~ 293 (560)
+.++|+||.+|+....++ .++.++.+.+.++.||+..+++.+.+ .....+. -.|+||+. |+.. .+
T Consensus 64 l~~~d~Iil~v~~~~~v~-~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~----~~Gi~fldapVSGG~~gA~~G~ 138 (470)
T PTZ00142 64 LKKPRKVILLIKAGEAVD-ETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCE----EKGILYLGMGVSGGEEGARYGP 138 (470)
T ss_pred CCCCCEEEEEeCChHHHH-HHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHH----HcCCeEEcCCCCCCHHHHhcCC
Confidence 346899999998766554 45588888899999887665555433 2333321 23777763 5543 34
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCc------eEEecC-cccc---chhchH-HH---HHHHHHHHHH--cCCCHHHH
Q 008604 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKT------PIVVGN-CTGF---AVNRMF-FP---YTQAAFLLVE--RGTDLYLI 357 (560)
Q Consensus 294 lvEiv~g~~t~~e~~~~~~~l~~~lGk~------~i~v~d-~~G~---i~nri~-~~---~~~ea~~l~~--~G~~~~dI 357 (560)
.-++.| ++++++.++++++.++.. ...+++ ..|. ++++.+ .. .+.|++.+.+ .|++++++
T Consensus 139 -~lm~GG---~~~a~~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l 214 (470)
T PTZ00142 139 -SLMPGG---NKEAYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEEL 214 (470)
T ss_pred -EEEEeC---CHHHHHHHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHH
Confidence 434445 789999999999999977 567775 3442 344433 33 3689999985 68899999
Q ss_pred HHHHHh
Q 008604 358 DRAITK 363 (560)
Q Consensus 358 D~a~~~ 363 (560)
-.++..
T Consensus 215 ~~v~~~ 220 (470)
T PTZ00142 215 SEVFNK 220 (470)
T ss_pred HHHHHH
Confidence 888864
No 61
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.37 E-value=2.4e-11 Score=129.69 Aligned_cols=154 Identities=19% Similarity=0.185 Sum_probs=118.4
Q ss_pred eEEEEEc-CccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 008604 148 KKVAILG-GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (560)
Q Consensus 148 ~~V~VIG-~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (560)
++|+||| +|.||.++|..|..+|++|+++|++++....... +.| +..+++. +.+.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~----------~~g-------------v~~~~~~~e~~~ 57 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAK----------ELG-------------VEYANDNIDAAK 57 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHH----------HcC-------------CeeccCHHHHhc
Confidence 3799997 7999999999999999999999999876532211 112 1123333 4578
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCc--ccHHHHHhhccCCCcEeecccCC----CCCCCCeEEEEe
Q 008604 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTYSKDRIVGAHFFS----PAHVMPLLEIVR 299 (560)
Q Consensus 226 ~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSs--l~i~~la~~~~~~~r~~g~hf~~----P~~~~~lvEiv~ 299 (560)
+||+||.|+|. .....++.++.+.++++++|++.+|+ .+...+.+.++...+|++.||+. |......+.+++
T Consensus 58 ~aDvVIlavp~--~~~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~~~V~~HPmaGp~~~~~~g~~~il~p 135 (437)
T PRK08655 58 DADIVIISVPI--NVTEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPEGVEILPTHPMFGPRTPSLKGQVVILTP 135 (437)
T ss_pred cCCEEEEecCH--HHHHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhcCCCCEEEEcCCCCCCCCcccCCCEEEEec
Confidence 99999999995 34468888998889999998877764 34556666665556899999874 334566777888
Q ss_pred CCCCcHHHHHHHHHHHHhcCCceEEec
Q 008604 300 TNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (560)
Q Consensus 300 g~~t~~e~~~~~~~l~~~lGk~~i~v~ 326 (560)
++.++++.++.+.+++..+|..++.+.
T Consensus 136 ~~~~~~~~~~~v~~ll~~~G~~v~~~~ 162 (437)
T PRK08655 136 TEKRSNPWFDKVKNFLEKEGARVIVTS 162 (437)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEECC
Confidence 888899999999999999999888775
No 62
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.36 E-value=1.8e-12 Score=145.96 Aligned_cols=91 Identities=14% Similarity=0.181 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHHhCCCC--CCcH
Q 008604 460 KDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKYIYSRLEEWSSLYGEFF--KPCA 537 (560)
Q Consensus 460 ~~i~~r~l~~~~~ea~~~l~egv~~~~~diD~~~~~g~g~p~~~gGp~~~~d~~G~~~~~~~~~~~~~~~~~~~--~p~~ 537 (560)
-+|.||++.++++||++++++| + +|+|||.+|..++|||+ |||+++|.+|+|..+++++.+...+++++ .|++
T Consensus 496 Gfi~NRl~~~~~~ea~~l~~eG-~-~~~~ID~a~~~~~G~p~---GPf~l~D~~Gld~~~~i~~~~~~~~~~~~~~~~~~ 570 (714)
T TIGR02437 496 GFFVNRVLFPYFGGFSKLLRDG-A-DFVRIDKVMEKQFGWPM---GPAYLLDVVGIDTGHHAQAVMAEGFPDRMGKDGRD 570 (714)
T ss_pred cchHHHHHHHHHHHHHHHHHCC-C-CHHHHHHHHHhcCCCcc---CHHHHHHhhhHHHHHHHHHHHHHhcCcccccchhH
Confidence 5899999999999999999999 5 89999999999999998 99999999999999999999998888754 4578
Q ss_pred HHHHHHH-------cCCCCcCCCcc
Q 008604 538 FLAERAG-------KGATLSAPVEE 555 (560)
Q Consensus 538 ~l~~~~~-------~g~~f~~~~~~ 555 (560)
+|++|++ +|+|||+|+..
T Consensus 571 ~l~~~v~~G~lG~K~g~GfY~y~~~ 595 (714)
T TIGR02437 571 AIDALFEAKRLGQKNGKGFYAYEAD 595 (714)
T ss_pred HHHHHHHCCCCcccCCCEEEecccC
Confidence 9999995 79999999643
No 63
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.36 E-value=2.7e-11 Score=122.18 Aligned_cols=189 Identities=15% Similarity=0.158 Sum_probs=131.0
Q ss_pred ceEEEEEcCccchHHHHHHHHhCC----CcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 008604 147 VKKVAILGGGLMGSGIATALILSN----YPVILKEVNEK-FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (560)
Q Consensus 147 ~~~V~VIG~G~mG~~iA~~l~~~G----~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (560)
.++|+|||+|.||.+|+..|+++| ++|+++|++++ .++.... +.| +..+.+.
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~----------~~g-------------~~~~~~~ 59 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQ----------KYG-------------VKGTHNK 59 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHH----------hcC-------------ceEeCCH
Confidence 468999999999999999999998 89999999764 3332211 112 1222333
Q ss_pred -ccccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccHHHHHhhccCCCcEeecccCCCCCC-CCeEEEEe
Q 008604 222 -ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHV-MPLLEIVR 299 (560)
Q Consensus 222 -~~~~~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~~la~~~~~~~r~~g~hf~~P~~~-~~lvEiv~ 299 (560)
+.+.+||+||.||+.+ .-.+++..+.+.+.++++|+|..++++++.+.+.+.+..++++.|+..|... ..+.-+++
T Consensus 60 ~e~~~~aDvVilav~p~--~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~~~~~~v~r~mPn~~~~~~~~~t~~~~ 137 (279)
T PRK07679 60 KELLTDANILFLAMKPK--DVAEALIPFKEYIHNNQLIISLLAGVSTHSIRNLLQKDVPIIRAMPNTSAAILKSATAISP 137 (279)
T ss_pred HHHHhcCCEEEEEeCHH--HHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCeEEEECCCHHHHHhcccEEEee
Confidence 4568899999999843 3445667887778888888888899999988887765567999998655443 34455567
Q ss_pred CCCCcHHHHHHHHHHHHhcCCceEEecCc--c---ccch--hchHHHHHHHHHH--HHHcCCCHHHHHHHHH
Q 008604 300 TNQTSPQVIVDLLDIGKKIKKTPIVVGNC--T---GFAV--NRMFFPYTQAAFL--LVERGTDLYLIDRAIT 362 (560)
Q Consensus 300 g~~t~~e~~~~~~~l~~~lGk~~i~v~d~--~---G~i~--nri~~~~~~ea~~--l~~~G~~~~dID~a~~ 362 (560)
++..+++..+.+++++..+|+. +.+.+. . |... ... ...+.|++. ....|+++++.-.++.
T Consensus 138 ~~~~~~~~~~~v~~l~~~~G~~-~~v~e~~~~~~~a~~Gsgpa~-~~~~~eal~e~~~~~Gl~~~~a~~~~~ 207 (279)
T PRK07679 138 SKHATAEHIQTAKALFETIGLV-SVVEEEDMHAVTALSGSGPAY-IYYVVEAMEKAAKKIGLKEDVAKSLIL 207 (279)
T ss_pred CCCCCHHHHHHHHHHHHhCCcE-EEeCHHHhhhHHHhhcCHHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 8788899999999999999984 444321 0 1100 111 223334433 3467888888888875
No 64
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.35 E-value=3.4e-11 Score=127.80 Aligned_cols=198 Identities=14% Similarity=0.175 Sum_probs=127.6
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH--------HHHHHHHHHHcCCCCHHHHHhhhcccccc
Q 008604 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGR--------VRANLQSRVKKGKMTQEKFEKTISLLTGV 218 (560)
Q Consensus 147 ~~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~--------i~~~~~~~~~~g~~~~~~~~~~~~~i~~~ 218 (560)
+++|+|||+|.||.++|..|+++|++|++||+|+++++..... +...+.+.++. +++..+
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~------------g~l~~~ 70 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEG------------GYLRAT 70 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhc------------Cceeee
Confidence 5789999999999999999999999999999999987753211 11111111122 233334
Q ss_pred cCcccccCCCEEEEeccCC--------hHHHHHHHHHHHhhcCCCceeeccCCcccHH---HHHhhccC--CC-cE--e-
Q 008604 219 LDYESFKDVDMVIEAIIEN--------VSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYS--KD-RI--V- 281 (560)
Q Consensus 219 ~~~~~~~~aDlVIeav~e~--------~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~---~la~~~~~--~~-r~--~- 281 (560)
++ +.+||+||.|+|.+ +..-..+.+.+.++++++++|+ ..||+++. ++...+.. +. ++ .
T Consensus 71 ~~---~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI-~~STv~pgtt~~~~~~l~~~~~~~~~~~~~ 146 (415)
T PRK11064 71 TT---PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVI-LESTSPVGATEQMAEWLAEARPDLTFPQQA 146 (415)
T ss_pred cc---cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEE-EeCCCCCCHHHHHHHHHHHhccCCcccccc
Confidence 33 45899999999964 3444556678888899998775 45555532 33322211 00 00 0
Q ss_pred --eccc---CCC--CCCCCeE-------EEEeCCCCcHHHHHHHHHHHHhcCCceEEecC-ccc---cchhchHH----H
Q 008604 282 --GAHF---FSP--AHVMPLL-------EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTG---FAVNRMFF----P 339 (560)
Q Consensus 282 --g~hf---~~P--~~~~~lv-------Eiv~g~~t~~e~~~~~~~l~~~lGk~~i~v~d-~~G---~i~nri~~----~ 339 (560)
+..| ++| +..+..+ -++.| .+++..+.+++++..+++..+.+.+ ..+ .++++++. +
T Consensus 147 g~~~~f~v~~~PE~~~~G~~~~~~~~~~~vvgG--~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia 224 (415)
T PRK11064 147 GEQADINIAYCPERVLPGQVMVELIKNDRVIGG--MTPVCSARASELYKIFLEGECVVTNSRTAEMCKLTENSFRDVNIA 224 (415)
T ss_pred cCCCCeEEEECCCccCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHHHHHHHHHHH
Confidence 0011 244 2222111 35555 3789999999999999988777765 222 35566554 4
Q ss_pred HHHHHHHHHH-cCCCHHHHHHHHH
Q 008604 340 YTQAAFLLVE-RGTDLYLIDRAIT 362 (560)
Q Consensus 340 ~~~ea~~l~~-~G~~~~dID~a~~ 362 (560)
++||+..+.+ .|+++.++-+++.
T Consensus 225 ~~nE~~~lae~~GiD~~~v~~~~~ 248 (415)
T PRK11064 225 FANELSLICADQGINVWELIRLAN 248 (415)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHhc
Confidence 5799988885 6899999988874
No 65
>PLN02858 fructose-bisphosphate aldolase
Probab=99.35 E-value=1.7e-11 Score=146.15 Aligned_cols=187 Identities=16% Similarity=0.128 Sum_probs=138.0
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 008604 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (560)
Q Consensus 147 ~~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (560)
-++|+|||+|.||.+||.+|+++||+|++||+++++.+... +.|.. ..++. +.+.
T Consensus 4 ~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~-----------~~Ga~-------------~~~s~~e~a~ 59 (1378)
T PLN02858 4 AGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFC-----------ELGGH-------------RCDSPAEAAK 59 (1378)
T ss_pred CCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HcCCe-------------ecCCHHHHHh
Confidence 36899999999999999999999999999999998876542 33421 12233 5567
Q ss_pred CCCEEEEeccCChHHHHHHHH--HHHhhcCCCceeeccCCcccHH---HHHhhccCCCcEee--cccC-CCCC-------
Q 008604 226 DVDMVIEAIIENVSLKQQIFA--DLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVG--AHFF-SPAH------- 290 (560)
Q Consensus 226 ~aDlVIeav~e~~~~k~~~~~--~l~~~~~~~~ii~sntSsl~i~---~la~~~~~~~r~~g--~hf~-~P~~------- 290 (560)
+||+||.|+|++..++..++. .+.+.+.++.+++ ++||+++. ++++.+.. .| .+|. .|+.
T Consensus 60 ~advVi~~l~~~~~v~~V~~g~~g~~~~l~~g~iiv-d~STi~p~~~~~la~~l~~----~g~~~~~lDaPVsGg~~~A~ 134 (1378)
T PLN02858 60 DAAALVVVLSHPDQVDDVFFGDEGAAKGLQKGAVIL-IRSTILPLQLQKLEKKLTE----RKEQIFLVDAYVSKGMSDLL 134 (1378)
T ss_pred cCCEEEEEcCChHHHHHHHhchhhHHhcCCCcCEEE-ECCCCCHHHHHHHHHHHHh----cCCceEEEEccCcCCHHHHh
Confidence 899999999999888877663 4666777888765 56666655 44444422 24 5565 3554
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEe-cC-ccc---cchhchHHH----HHHHHHHHHH-cCCCHHHHHHH
Q 008604 291 VMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVV-GN-CTG---FAVNRMFFP----YTQAAFLLVE-RGTDLYLIDRA 360 (560)
Q Consensus 291 ~~~lvEiv~g~~t~~e~~~~~~~l~~~lGk~~i~v-~d-~~G---~i~nri~~~----~~~ea~~l~~-~G~~~~dID~a 360 (560)
...|.-++.| +++.++.+++++..+|+..+++ ++ +.| .++|+++.. .+.|++.+.+ .|++++.+-.+
T Consensus 135 ~G~L~imvGG---~~~~~~~~~p~l~~~g~~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~v 211 (1378)
T PLN02858 135 NGKLMIIASG---RSDAITRAQPFLSAMCQKLYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDI 211 (1378)
T ss_pred cCCeEEEEcC---CHHHHHHHHHHHHHhcCceEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 3467777777 7889999999999999988765 54 333 367777653 3689988875 79999999999
Q ss_pred HH-hcC
Q 008604 361 IT-KFG 365 (560)
Q Consensus 361 ~~-~~G 365 (560)
+. +.|
T Consensus 212 l~~s~g 217 (1378)
T PLN02858 212 ISNAAG 217 (1378)
T ss_pred HhcCCc
Confidence 98 654
No 66
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.35 E-value=1.3e-11 Score=122.92 Aligned_cols=158 Identities=16% Similarity=0.203 Sum_probs=119.2
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC--cccc
Q 008604 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD--YESF 224 (560)
Q Consensus 147 ~~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--~~~~ 224 (560)
.++|+|+|+|.||+++|..+..+|+.|.+++++........ ..+.|..++ .+.+ .+.+
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~---------a~~lgv~d~-----------~~~~~~~~~~ 62 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKA---------ALELGVIDE-----------LTVAGLAEAA 62 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHH---------HhhcCcccc-----------cccchhhhhc
Confidence 47899999999999999999999999977776654332211 123343221 1112 3567
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCccc--HHHHHhhccCCCcEeecccCCCCC------CCCeEE
Q 008604 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERTYSKDRIVGAHFFSPAH------VMPLLE 296 (560)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~--i~~la~~~~~~~r~~g~hf~~P~~------~~~lvE 296 (560)
.++|+||.||| +.....+++++.+.++++++|+..+|+.. +..+....+...+|+|.||+..++ ....+-
T Consensus 63 ~~aD~VivavP--i~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~~~~v 140 (279)
T COG0287 63 AEADLVIVAVP--IEATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLFENAVVV 140 (279)
T ss_pred ccCCEEEEecc--HHHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCCCCCCcccccccCCCEEE
Confidence 88999999999 77888999999999999999998888754 455555443322899999987541 245666
Q ss_pred EEeCCCCcHHHHHHHHHHHHhcCCceEEec
Q 008604 297 IVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (560)
Q Consensus 297 iv~g~~t~~e~~~~~~~l~~~lGk~~i~v~ 326 (560)
+++++.++.+.+..++.+++.+|-.++.+.
T Consensus 141 ltp~~~~~~~~~~~~~~~~~~~ga~~v~~~ 170 (279)
T COG0287 141 LTPSEGTEKEWVEEVKRLWEALGARLVEMD 170 (279)
T ss_pred EcCCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 888888899999999999999998888775
No 67
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.35 E-value=6.2e-11 Score=118.68 Aligned_cols=189 Identities=16% Similarity=0.151 Sum_probs=134.8
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-c
Q 008604 148 KKVAILGGGLMGSGIATALILSNY----PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E 222 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 222 (560)
++|+|||+|.||.+|+..|.++|+ +|+++|+++++++...++ .| +..+++. +
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~----------~g-------------~~~~~~~~e 59 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDK----------YG-------------ITITTNNNE 59 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHh----------cC-------------cEEeCCcHH
Confidence 379999999999999999999885 699999999876543211 12 1122333 4
Q ss_pred cccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccHHHHHhhccCCCcEeecccCCCCCCCCeEEE-EeCC
Q 008604 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEI-VRTN 301 (560)
Q Consensus 223 ~~~~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~~la~~~~~~~r~~g~hf~~P~~~~~lvEi-v~g~ 301 (560)
.+.+||+||.|++. ..-.++++++.+.++++++|+|-..+++++.+.+.++...+++-..|.-|+....-+.. .+++
T Consensus 60 ~~~~aDiIiLavkP--~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN~~~~vg~g~t~~~~~~ 137 (272)
T PRK12491 60 VANSADILILSIKP--DLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVGEGMSALCFNE 137 (272)
T ss_pred HHhhCCEEEEEeCh--HHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcEEEECCChHHHHcCceEEEEeCC
Confidence 56899999999993 56677788888888889999999999999999998876667888888777766555554 4677
Q ss_pred CCcHHHHHHHHHHHHhcCCceEEecCc--ccc-chhchH---HHHHHHHHH--HHHcCCCHHHHHHHHH
Q 008604 302 QTSPQVIVDLLDIGKKIKKTPIVVGNC--TGF-AVNRMF---FPYTQAAFL--LVERGTDLYLIDRAIT 362 (560)
Q Consensus 302 ~t~~e~~~~~~~l~~~lGk~~i~v~d~--~G~-i~nri~---~~~~~ea~~--l~~~G~~~~dID~a~~ 362 (560)
..+++..+.+..++..+|+. +.+.+. ..+ .+.-.. ..++.|++. .++.|++.++-.....
T Consensus 138 ~~~~~~~~~v~~lf~~~G~~-~~~~E~~~d~~talsgsgPAf~~~~~eal~~a~v~~Gl~~~~A~~l~~ 205 (272)
T PRK12491 138 MVTEKDIKEVLNIFNIFGQT-EVVNEKLMDVVTSISGSSPAYVYMFIEAMADAAVLGGMPRKQAYKFAA 205 (272)
T ss_pred CCCHHHHHHHHHHHHcCCCE-EEEcHHHhhhHHHhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 78889999999999999987 455421 100 011111 122333332 2356777777766664
No 68
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.35 E-value=4.7e-11 Score=121.45 Aligned_cols=188 Identities=9% Similarity=0.055 Sum_probs=122.7
Q ss_pred EEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccCC
Q 008604 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDV 227 (560)
Q Consensus 149 ~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~a 227 (560)
+|+|||+|.||.+||..++++|++|++||+++++.+... +.|.....+. .++ +.+.++
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~-----------~~g~~~~~s~----------~~~~~~~~~~ 60 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMK-----------EDRTTGVANL----------RELSQRLSAP 60 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----------HcCCcccCCH----------HHHHhhcCCC
Confidence 799999999999999999999999999999998876543 2221100000 011 235679
Q ss_pred CEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccH--HHHHhhc-cCCCcEeecccCCCCC--CCCeEEEEeCCC
Q 008604 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL--NLIGERT-YSKDRIVGAHFFSPAH--VMPLLEIVRTNQ 302 (560)
Q Consensus 228 DlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i--~~la~~~-~~~~r~~g~hf~~P~~--~~~lvEiv~g~~ 302 (560)
|+||.++|.+ .-..++.++.+.++++.+|++.+++.+. .++...+ .+..+|+.++....+. ...+.-++.|
T Consensus 61 dvIi~~vp~~--~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G~~~~~gG-- 136 (298)
T TIGR00872 61 RVVWVMVPHG--IVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERGYCFMIGG-- 136 (298)
T ss_pred CEEEEEcCch--HHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCeeeeCC--
Confidence 9999999976 4466668888888888877655444432 2333333 2222333333221111 1123435555
Q ss_pred CcHHHHHHHHHHHHhcCC---ceEEecC-cccc---chhchH-HH---HHHHHHHHHHc-C--CCHHHHHHHHH
Q 008604 303 TSPQVIVDLLDIGKKIKK---TPIVVGN-CTGF---AVNRMF-FP---YTQAAFLLVER-G--TDLYLIDRAIT 362 (560)
Q Consensus 303 t~~e~~~~~~~l~~~lGk---~~i~v~d-~~G~---i~nri~-~~---~~~ea~~l~~~-G--~~~~dID~a~~ 362 (560)
+++.++.++++++.++. ..+++++ ..|. ++++.+ .. .+.|++.+++. | ++++++-.+|+
T Consensus 137 -~~~~~~~~~~~l~~~~~~~~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~~ 209 (298)
T TIGR00872 137 -DGEAFARAEPLFADVAPEEQGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVWR 209 (298)
T ss_pred -CHHHHHHHHHHHHHhcCcCCCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHc
Confidence 78999999999999986 4677775 2332 344443 32 25888888865 4 59999999987
No 69
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.35 E-value=1.9e-11 Score=130.15 Aligned_cols=201 Identities=17% Similarity=0.192 Sum_probs=130.4
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH----HHHHHHHHHcCCCCHHHHHhhhcccccccCcc-
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV----RANLQSRVKKGKMTQEKFEKTISLLTGVLDYE- 222 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i----~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~- 222 (560)
++|+|||+|.||.++|..|+++|++|++||+++++++...+.. +..+++.+.+. ...++++.+++++
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~--------~~~g~l~~~~~~~~ 72 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKA--------LAAGRLRATTDYED 72 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHh--------hhcCCeEEECCHHH
Confidence 3799999999999999999999999999999999876533110 00000010000 0013455666664
Q ss_pred cccCCCEEEEeccCChH--------HHHHHHHHHHhhcCCCceeeccCCcccHH---HHHh-hccC-------CCcEeec
Q 008604 223 SFKDVDMVIEAIIENVS--------LKQQIFADLEKYCPPHCILASNTSTIDLN---LIGE-RTYS-------KDRIVGA 283 (560)
Q Consensus 223 ~~~~aDlVIeav~e~~~--------~k~~~~~~l~~~~~~~~ii~sntSsl~i~---~la~-~~~~-------~~r~~g~ 283 (560)
.+++||+||.|||.... ....+...+.+.++++++|+ ++||+++. ++.. .+.+ .+-.+..
T Consensus 73 ~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi-~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~ 151 (411)
T TIGR03026 73 AIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVV-LESTVPPGTTEEVVKPILERASGLKLGEDFYLAY 151 (411)
T ss_pred HHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEE-EeCcCCCCchHHHHHHHHHhhcCCCCCCCceEEE
Confidence 58899999999987642 34555677888888888775 45666543 3332 2111 0011222
Q ss_pred ccCCCCCCC--Ce-------EEEEeCCCCcHHHHHHHHHHHHhcC-CceEEecCc-cc---cchhchH----HHHHHHHH
Q 008604 284 HFFSPAHVM--PL-------LEIVRTNQTSPQVIVDLLDIGKKIK-KTPIVVGNC-TG---FAVNRMF----FPYTQAAF 345 (560)
Q Consensus 284 hf~~P~~~~--~l-------vEiv~g~~t~~e~~~~~~~l~~~lG-k~~i~v~d~-~G---~i~nri~----~~~~~ea~ 345 (560)
+|.... .+ --++.| .+++..+.+++++..++ +.++.+++. .+ .++++++ .++++|+.
T Consensus 152 ---~Pe~~~~G~~~~~~~~~~~iv~G--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~ 226 (411)
T TIGR03026 152 ---NPEFLREGNAVHDLLNPDRIVGG--ETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELA 226 (411)
T ss_pred ---CCCcCCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332211 11 134555 48899999999999998 577777652 22 3556665 35689999
Q ss_pred HHHH-cCCCHHHHHHHHH
Q 008604 346 LLVE-RGTDLYLIDRAIT 362 (560)
Q Consensus 346 ~l~~-~G~~~~dID~a~~ 362 (560)
.+.+ .|++++++-.++.
T Consensus 227 ~la~~~GiD~~~v~~~~~ 244 (411)
T TIGR03026 227 RICEALGIDVYEVIEAAG 244 (411)
T ss_pred HHHHHhCCCHHHHHHHhC
Confidence 9886 6899999998886
No 70
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.34 E-value=4.6e-11 Score=121.78 Aligned_cols=182 Identities=18% Similarity=0.151 Sum_probs=123.0
Q ss_pred EEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc----c
Q 008604 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES----F 224 (560)
Q Consensus 149 ~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~----~ 224 (560)
+|+|||+|.||.+||..|+++|++|++||+++++.+... +.|. ....+.++ +
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~-----------~~g~-------------~~~~~~~e~~~~~ 57 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALA-----------EEGA-------------TGADSLEELVAKL 57 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHH-----------HCCC-------------eecCCHHHHHhhc
Confidence 799999999999999999999999999999998776432 2231 11222222 2
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCccc--HHHHHhhccCCCcEeecccCC-CCCCC------CeE
Q 008604 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERTYSKDRIVGAHFFS-PAHVM------PLL 295 (560)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~--i~~la~~~~~~~r~~g~hf~~-P~~~~------~lv 295 (560)
.++|+||.++|.+..++ .++..+.+.++++.++++.+++.+ ..++++.+.. .|.+|.. |+... .+.
T Consensus 58 ~~~dvvi~~v~~~~~~~-~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~----~g~~~~dapvsG~~~~a~~g~~ 132 (301)
T PRK09599 58 PAPRVVWLMVPAGEITD-ATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAE----KGIHFVDVGTSGGVWGLERGYC 132 (301)
T ss_pred CCCCEEEEEecCCcHHH-HHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHH----cCCEEEeCCCCcCHHHHhcCCe
Confidence 34799999999765554 445677777888887764333333 2234444321 2566653 54321 233
Q ss_pred EEEeCCCCcHHHHHHHHHHHHhcCC----ceEEecC-cccc---chhchHH-H---HHHHHHHHHH---cCCCHHHHHHH
Q 008604 296 EIVRTNQTSPQVIVDLLDIGKKIKK----TPIVVGN-CTGF---AVNRMFF-P---YTQAAFLLVE---RGTDLYLIDRA 360 (560)
Q Consensus 296 Eiv~g~~t~~e~~~~~~~l~~~lGk----~~i~v~d-~~G~---i~nri~~-~---~~~ea~~l~~---~G~~~~dID~a 360 (560)
-++.| ++++++.++++++.+++ ..+++++ ..|. ++|+.+. . .+.|++.+.+ .|++++++-.+
T Consensus 133 ~~~gG---~~~~~~~~~~~l~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~ 209 (301)
T PRK09599 133 LMIGG---DKEAVERLEPIFKALAPRAEDGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEV 209 (301)
T ss_pred EEecC---CHHHHHHHHHHHHHHcccccCCeEeECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 33444 78999999999999998 7788886 2332 4555443 2 2588988886 56899999999
Q ss_pred HH
Q 008604 361 IT 362 (560)
Q Consensus 361 ~~ 362 (560)
|+
T Consensus 210 ~~ 211 (301)
T PRK09599 210 WR 211 (301)
T ss_pred Hh
Confidence 87
No 71
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.33 E-value=4.3e-11 Score=122.45 Aligned_cols=156 Identities=14% Similarity=0.167 Sum_probs=113.4
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-c
Q 008604 146 RVKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E 222 (560)
Q Consensus 146 ~~~~V~VIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 222 (560)
.+++|+|||+|.||.++|..+.++|+ +|++||++++.++.+. +.|... ....+. +
T Consensus 5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~-----------~~g~~~-----------~~~~~~~~ 62 (307)
T PRK07502 5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAR-----------ELGLGD-----------RVTTSAAE 62 (307)
T ss_pred CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH-----------hCCCCc-----------eecCCHHH
Confidence 35799999999999999999999995 8999999998765432 223210 112233 4
Q ss_pred cccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCccc---HHHHHhhccCCCcEeecccCCCCCC--------
Q 008604 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID---LNLIGERTYSKDRIVGAHFFSPAHV-------- 291 (560)
Q Consensus 223 ~~~~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~---i~~la~~~~~~~r~~g~hf~~P~~~-------- 291 (560)
.+.+||+||.|+|.. ....++.++.+.++++++|++. ++.. +..+........++++.|++.+...
T Consensus 63 ~~~~aDvViiavp~~--~~~~v~~~l~~~l~~~~iv~dv-gs~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~ 139 (307)
T PRK07502 63 AVKGADLVILCVPVG--ASGAVAAEIAPHLKPGAIVTDV-GSVKASVIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFA 139 (307)
T ss_pred HhcCCCEEEECCCHH--HHHHHHHHHHhhCCCCCEEEeC-ccchHHHHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCH
Confidence 578999999999953 4567788888888889877644 4433 3344444444558999999864321
Q ss_pred ----CCeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEec
Q 008604 292 ----MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (560)
Q Consensus 292 ----~~lvEiv~g~~t~~e~~~~~~~l~~~lGk~~i~v~ 326 (560)
...+.+++...++++.++.+..++..+|..++.+.
T Consensus 140 ~l~~g~~~~l~~~~~~~~~~~~~~~~l~~~lG~~~~~~~ 178 (307)
T PRK07502 140 ELFENRWCILTPPEGTDPAAVARLTAFWRALGARVEEMD 178 (307)
T ss_pred HHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 23455777777889999999999999999888875
No 72
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=99.31 E-value=3.6e-12 Score=129.31 Aligned_cols=98 Identities=13% Similarity=0.041 Sum_probs=88.1
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|+|||++|+|+||+++||||+|||+++|++++.++|++++..+ |
T Consensus 173 llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~-p----------------------------------- 216 (298)
T PRK12478 173 HSLTGRPLTGVQAAEAELINEAVPFERLEARVAEVATELARIP-L----------------------------------- 216 (298)
T ss_pred HHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5799999999999999999999999999999999999999852 2
Q ss_pred CcHHHHHHHHHHhhh-CChHHHHHHHHHHHhHHhcCHHHH--------HHHHHHHhccCCCCC
Q 008604 81 THPIVCIDVVEAGVV-SGPRAGLQKEAEDFQKLLRSETCK--------SLVHIFFAQRGTSKV 134 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~-~~~~~~l~~E~~~f~~l~~s~~~~--------~~~~aF~~kr~~~~~ 134 (560)
.++..+|++++.+.. .+++++++.|...+..++.|+|++ +++.+|++||++...
T Consensus 217 ~a~~~~K~~l~~~~~~~~l~~~~~~e~~~~~~~~~s~d~~e~~~~~~~egv~Af~ekR~p~f~ 279 (298)
T PRK12478 217 SQLQAQKLIVNQAYENMGLASTQTLGGILDGLMRNTPDALEFIRTAETQGVRAAVERRDGPFG 279 (298)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 478889999998776 469999999999999999999997 599999999987653
No 73
>PLN02600 enoyl-CoA hydratase
Probab=99.31 E-value=5.3e-12 Score=125.12 Aligned_cols=97 Identities=21% Similarity=0.306 Sum_probs=88.6
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|+|||++++|+||+++||||+|||++++++++.++|+++++.+ |
T Consensus 152 l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~la~~~-p----------------------------------- 195 (251)
T PLN02600 152 LIFTGRRIGAREAASMGLVNYCVPAGEAYEKALELAQEINQKG-P----------------------------------- 195 (251)
T ss_pred HHHhCCccCHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999852 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhccCCCC
Q 008604 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~~ 133 (560)
.++..+|++++.....+++++++.|...+..++.|+++++++++|++||++..
T Consensus 196 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~~ 248 (251)
T PLN02600 196 LAIKMAKKAINEGSEVDMASGLEIEEECYEQVLKTKDRLEGLAAFAEKRKPVY 248 (251)
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCC
Confidence 37778999999888889999999999999999999999999999999987654
No 74
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=99.31 E-value=5.9e-12 Score=125.06 Aligned_cols=97 Identities=19% Similarity=0.240 Sum_probs=88.2
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|+|||++++|+||+++||||+|||++++++.+.++|++++..+ |
T Consensus 156 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 199 (255)
T PRK08150 156 MMLTGRVYDAQEGERLGLAQYLVPAGEALDKAMELARRIAQNA-P----------------------------------- 199 (255)
T ss_pred HHHcCCcCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5799999999999999999999999999999999999999852 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhccCCCC
Q 008604 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~~ 133 (560)
.+...+|++++.....+++++++.|.+.+..++.|+|+++++.+|++||++++
T Consensus 200 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~~kr~p~~ 252 (255)
T PRK08150 200 LTNFAVLNALPRIADMSADDGLFVESLMAAVAQSAPEAKERLRAFLEKKAAKV 252 (255)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCC
Confidence 37778899999887888999999999999999999999999999999988765
No 75
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=99.31 E-value=5.4e-12 Score=125.64 Aligned_cols=97 Identities=25% Similarity=0.284 Sum_probs=88.6
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|+|||++++|+||+++||||+|||+++++++|.+++++++..+ +
T Consensus 158 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~------------------------------------~ 201 (257)
T PRK05862 158 LCLTGRMMDAAEAERAGLVSRVVPADKLLDEALAAATTIASFS------------------------------------L 201 (257)
T ss_pred HHHhCCccCHHHHHHcCCCCEeeCHhHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999998842 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhccCCCC
Q 008604 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~~ 133 (560)
+++..+|++++.....+++++++.|.+.+..++.|+++++++++|++||++..
T Consensus 202 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~e~i~af~~kr~p~~ 254 (257)
T PRK05862 202 PAVMMAKEAVNRAYETTLAEGLLFERRLFHSLFATEDQKEGMAAFVEKRKPVF 254 (257)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCCC
Confidence 47888999999988889999999999999999999999999999999987653
No 76
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.31 E-value=7.9e-11 Score=119.94 Aligned_cols=181 Identities=17% Similarity=0.132 Sum_probs=122.4
Q ss_pred EEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-cc--
Q 008604 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FK-- 225 (560)
Q Consensus 149 ~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~-- 225 (560)
+|+|||+|.||.+||..++++|++|++||+++++.+... +.|. ....+.++ +.
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~-----------~~g~-------------~~~~s~~~~~~~~ 57 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAG-----------KLGI-------------TARHSLEELVSKL 57 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH-----------HCCC-------------eecCCHHHHHHhC
Confidence 799999999999999999999999999999998765432 2221 12223322 22
Q ss_pred -CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccH---HHHHhhccCCCcEeecccCC-CCCCC------Ce
Q 008604 226 -DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL---NLIGERTYSKDRIVGAHFFS-PAHVM------PL 294 (560)
Q Consensus 226 -~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i---~~la~~~~~~~r~~g~hf~~-P~~~~------~l 294 (560)
++|+||.|+|.+..++. ++..+.+.++++.+|+ ++|+..+ .++++.+.. .|.+|.. |+... ..
T Consensus 58 ~~advVi~~vp~~~~~~~-v~~~i~~~l~~g~ivi-d~st~~~~~~~~~~~~~~~----~g~~~vdapV~G~~~~a~~g~ 131 (299)
T PRK12490 58 EAPRTIWVMVPAGEVTES-VIKDLYPLLSPGDIVV-DGGNSRYKDDLRRAEELAE----RGIHYVDCGTSGGVWGLRNGY 131 (299)
T ss_pred CCCCEEEEEecCchHHHH-HHHHHhccCCCCCEEE-ECCCCCchhHHHHHHHHHH----cCCeEEeCCCCCCHHHHhcCC
Confidence 37999999997755544 4567777777787775 3444332 344444421 2456653 44321 12
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhcCC---ceEEecC-ccc---cchhchHHH----HHHHHHHHHH-cC--CCHHHHHHH
Q 008604 295 LEIVRTNQTSPQVIVDLLDIGKKIKK---TPIVVGN-CTG---FAVNRMFFP----YTQAAFLLVE-RG--TDLYLIDRA 360 (560)
Q Consensus 295 vEiv~g~~t~~e~~~~~~~l~~~lGk---~~i~v~d-~~G---~i~nri~~~----~~~ea~~l~~-~G--~~~~dID~a 360 (560)
.-++.| +++.++.++++++.+|. ..+++++ ..| .++|+++.. .+.|++.+.+ .| ++++++-.+
T Consensus 132 ~~~~gG---~~~~~~~~~~~l~~~~~~~~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~ 208 (299)
T PRK12490 132 CLMVGG---DKEIYDRLEPVFKALAPEGPGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARL 208 (299)
T ss_pred eEEecC---CHHHHHHHHHHHHHhcCcCCcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHH
Confidence 334455 78899999999999997 6788875 222 256665543 2589999886 56 788888888
Q ss_pred HH
Q 008604 361 IT 362 (560)
Q Consensus 361 ~~ 362 (560)
|.
T Consensus 209 ~~ 210 (299)
T PRK12490 209 WR 210 (299)
T ss_pred Hc
Confidence 86
No 77
>PLN02858 fructose-bisphosphate aldolase
Probab=99.30 E-value=3.4e-11 Score=143.54 Aligned_cols=191 Identities=19% Similarity=0.215 Sum_probs=136.2
Q ss_pred ccceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 008604 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (560)
Q Consensus 145 ~~~~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (560)
+..++|+|||+|.||.+||..|+.+|++|++||+++++.+... +.|.. ...+. +.
T Consensus 322 ~~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~Ga~-------------~~~s~~e~ 377 (1378)
T PLN02858 322 KPVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFE-----------NAGGL-------------AGNSPAEV 377 (1378)
T ss_pred cCCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HcCCe-------------ecCCHHHH
Confidence 3458999999999999999999999999999999998876432 22321 12232 55
Q ss_pred ccCCCEEEEeccCChHHHHHHHH--HHHhhcCCCceeeccCCcccHH---HHHhhccCCCcEeecccCC-CCC-------
Q 008604 224 FKDVDMVIEAIIENVSLKQQIFA--DLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFFS-PAH------- 290 (560)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~~~~--~l~~~~~~~~ii~sntSsl~i~---~la~~~~~~~r~~g~hf~~-P~~------- 290 (560)
+.+||+||.||+++.+++..++. .+.+.+.++.+++ ++||+++. ++++.+.. .-.|.+|.. |+.
T Consensus 378 ~~~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l~~g~ivV-d~STvsP~~~~~la~~l~~--~g~g~~~lDAPVsGg~~~A~ 454 (1378)
T PLN02858 378 AKDVDVLVIMVANEVQAENVLFGDLGAVSALPAGASIV-LSSTVSPGFVIQLERRLEN--EGRDIKLVDAPVSGGVKRAA 454 (1378)
T ss_pred HhcCCEEEEecCChHHHHHHHhchhhHHhcCCCCCEEE-ECCCCCHHHHHHHHHHHHh--hCCCcEEEEccCCCChhhhh
Confidence 78999999999988887777654 3556667777765 55666654 34443321 114667663 543
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEecCccc-----cchhchHHH----HHHHHHHHHH-cCCCHHHHHHH
Q 008604 291 VMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG-----FAVNRMFFP----YTQAAFLLVE-RGTDLYLIDRA 360 (560)
Q Consensus 291 ~~~lvEiv~g~~t~~e~~~~~~~l~~~lGk~~i~v~d~~G-----~i~nri~~~----~~~ea~~l~~-~G~~~~dID~a 360 (560)
...|.-++.| +++.++.++++++.+|+..+++...+| .++|+++.. .+.|++.+.+ .|++++.+-++
T Consensus 455 ~G~L~imvgG---~~~~~~~~~plL~~lg~~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~ev 531 (1378)
T PLN02858 455 MGTLTIMASG---TDEALKSAGSVLSALSEKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDI 531 (1378)
T ss_pred cCCceEEEEC---CHHHHHHHHHHHHHHhCcEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 3456667777 678999999999999998777543234 367777653 3688988874 79999999888
Q ss_pred HH-hcC
Q 008604 361 IT-KFG 365 (560)
Q Consensus 361 ~~-~~G 365 (560)
+. +.|
T Consensus 532 l~~s~g 537 (1378)
T PLN02858 532 ISNAGG 537 (1378)
T ss_pred HHhhcc
Confidence 87 544
No 78
>PLN02888 enoyl-CoA hydratase
Probab=99.30 E-value=7.2e-12 Score=125.10 Aligned_cols=99 Identities=25% Similarity=0.309 Sum_probs=89.0
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|+|||++++|+||+++||||+|||++++.+.|.++|++++..+ |
T Consensus 163 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 206 (265)
T PLN02888 163 VSLTAMPLTAETAERWGLVNHVVEESELLKKAREVAEAIIKNN-Q----------------------------------- 206 (265)
T ss_pred HHHhCCccCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999852 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHh--cCHHHHHHHHHHHhccCCCCCC
Q 008604 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLL--RSETCKSLVHIFFAQRGTSKVP 135 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~--~s~~~~~~~~aF~~kr~~~~~~ 135 (560)
.+...+|++++.....+++++++.|.+.+..++ .++++++++++|++||+++|.|
T Consensus 207 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~e~~~af~ekr~~~~~~ 263 (265)
T PLN02888 207 GMVLRYKSVINDGLKLDLGHALQLEKERAHDYYNGMTKEQFQKMQEFIAGRSSKKPS 263 (265)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCCC
Confidence 478889999998888889999999999888885 5999999999999999988864
No 79
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=99.30 E-value=2.3e-11 Score=127.62 Aligned_cols=193 Identities=17% Similarity=0.225 Sum_probs=118.9
Q ss_pred EEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHH----HHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 008604 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRA----NLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (560)
Q Consensus 149 ~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~----~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (560)
+|+|||+|.||.++|..++. ||+|++||+++++++...+.+.. .+++.+.+ ...+++.+++. +.
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~----------~~~~l~~t~~~~~~ 70 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQS----------DKIHFNATLDKNEA 70 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHh----------CCCcEEEecchhhh
Confidence 79999999999999988875 99999999999998876543211 11111111 12234444544 45
Q ss_pred ccCCCEEEEeccCChHHH---------HHHHHHHHhhcCCCceeeccCCcccHH---HHHhhccCCCcEeecccCCCCCC
Q 008604 224 FKDVDMVIEAIIENVSLK---------QQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFFSPAHV 291 (560)
Q Consensus 224 ~~~aDlVIeav~e~~~~k---------~~~~~~l~~~~~~~~ii~sntSsl~i~---~la~~~~~~~r~~g~hf~~P~~~ 291 (560)
+.+||+||+|||++.+.| ..+.+.+.+ ++++.+++ ..||+|+. ++...+. + .|+.| +|...
T Consensus 71 ~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV-~~STv~pgtt~~l~~~~~--~--~~v~~-~PE~l 143 (388)
T PRK15057 71 YRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMV-IKSTVPVGFTAAMHKKYR--T--ENIIF-SPEFL 143 (388)
T ss_pred hcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEE-EeeecCCchHHHHHHHhh--c--CcEEE-Ccccc
Confidence 789999999999875443 344566766 57777664 56666654 3433221 1 12332 44321
Q ss_pred --CCe--------EEEEeCCCCcHHHHHHHHHHHHh--cCC-ceEEecC-ccc---cchhchHH----HHHHHHHHHHH-
Q 008604 292 --MPL--------LEIVRTNQTSPQVIVDLLDIGKK--IKK-TPIVVGN-CTG---FAVNRMFF----PYTQAAFLLVE- 349 (560)
Q Consensus 292 --~~l--------vEiv~g~~t~~e~~~~~~~l~~~--lGk-~~i~v~d-~~G---~i~nri~~----~~~~ea~~l~~- 349 (560)
+.+ .-++.+ +++..+.+.+++.. ++. .++++.+ ..+ .++++++. +++||...+.+
T Consensus 144 ~~G~a~~d~~~p~rvv~G~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~ 220 (388)
T PRK15057 144 REGKALYDNLHPSRIVIGE---RSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAES 220 (388)
T ss_pred cCCcccccccCCCEEEEEc---CcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112 223333 34556777777643 444 3434554 223 34565554 45799988875
Q ss_pred cCCCHHHHHHHHH
Q 008604 350 RGTDLYLIDRAIT 362 (560)
Q Consensus 350 ~G~~~~dID~a~~ 362 (560)
.|+++.++-.++.
T Consensus 221 ~GiD~~eV~~a~~ 233 (388)
T PRK15057 221 LGLNTRQIIEGVC 233 (388)
T ss_pred hCcCHHHHHHHhc
Confidence 6999999999984
No 80
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=99.29 E-value=8.4e-12 Score=124.17 Aligned_cols=97 Identities=19% Similarity=0.212 Sum_probs=88.6
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|+|+|++++|+||+++||||+|||++++++++.++|++++..+ |
T Consensus 157 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 200 (256)
T TIGR02280 157 LAMLGEKLDARTAASWGLIWQVVDDAALMDEAQALAVHLAAQP-T----------------------------------- 200 (256)
T ss_pred HHHcCCCCCHHHHHHcCCcceeeChHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999852 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhccCCCC
Q 008604 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~~ 133 (560)
.++..+|+.++.....+++++++.|.+.+..++.|+++++++++|++||++..
T Consensus 201 ~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 253 (256)
T TIGR02280 201 RGLALTKRAIQAAATNSLDTQLDLERDLQRELGRSADYAEGVTAFLDKRNPQF 253 (256)
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHcCCCCCC
Confidence 37788999999888888999999999999999999999999999999987764
No 81
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=99.29 E-value=9.7e-12 Score=123.87 Aligned_cols=97 Identities=31% Similarity=0.467 Sum_probs=88.1
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|+++|++++|+||+++||||+|||++++++.|.++|+++++.+ |
T Consensus 158 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~----------------------------------- 201 (257)
T PRK07658 158 MMLTSEPITGAEALKWGLVNGVFPEETLLDDAKKLAKKIAGKS-P----------------------------------- 201 (257)
T ss_pred HHHcCCCcCHHHHHHcCCcCeecChhHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998842 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhccCCCC
Q 008604 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~~ 133 (560)
.++..+|++++.+...+++++++.|...+..++.|+++++++++|++||+++.
T Consensus 202 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~ 254 (257)
T PRK07658 202 ATTRAVLELLQTTKSSSYYEGVKREAKIFGEVFTSEDAKEGVQAFLEKRKPSF 254 (257)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence 37788999999888788999999999999999999999999999999987654
No 82
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=99.28 E-value=8.2e-12 Score=124.59 Aligned_cols=96 Identities=27% Similarity=0.422 Sum_probs=87.7
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|+|+|++++|+||+++||||+|||++++++++.++|++++..+ |
T Consensus 164 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-p----------------------------------- 207 (260)
T PRK05980 164 LLLTGDAFSAERALEIGLVNAVVPHEELLPAARALARRIIRHS-P----------------------------------- 207 (260)
T ss_pred HHHcCCccCHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998852 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhccCCC
Q 008604 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~ 132 (560)
.++..+|++++.....+++++++.|.+.+..++.|+++++++.+|++||+++
T Consensus 208 ~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p~ 259 (260)
T PRK05980 208 VAVAAILTAVTRGLNLSIAEGLLIESEQFARMAGSADLREGLAAWIERRRPA 259 (260)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCC
Confidence 3777889999988888899999999999999999999999999999998764
No 83
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=99.28 E-value=1.1e-11 Score=123.56 Aligned_cols=97 Identities=31% Similarity=0.284 Sum_probs=87.9
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|+|+|++++|+||+++||||+|||++++++++.++|+++++.+ +
T Consensus 162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~------------------------------------~ 205 (261)
T PRK08138 162 MALTGCMVPAPEALAIGLVSEVVEDEQTLPRALELAREIARMP------------------------------------P 205 (261)
T ss_pred HHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999998742 1
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhccCCCC
Q 008604 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~~ 133 (560)
.++..+|++++.....++++++..|.+.+..++.|+++++++++|++||+++.
T Consensus 206 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~af~~kr~~~~ 258 (261)
T PRK08138 206 LALAQIKEVVLAGADAPLDAALALERKAFQLLFDSEDQKEGMDAFLEKRKPAY 258 (261)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCC
Confidence 37788999999888888999999999999999999999999999999987654
No 84
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=99.28 E-value=9.4e-12 Score=125.22 Aligned_cols=97 Identities=16% Similarity=0.246 Sum_probs=88.8
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|+|+|++++|+||+++||||+|||++++++.+.++|++++..+ |
T Consensus 178 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 221 (277)
T PRK08258 178 LLYTGRSMSAEEGERWGFFNRLVEPEELLAEAQALARRLAAGP-T----------------------------------- 221 (277)
T ss_pred HHHcCCCCCHHHHHHcCCCcEecCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998852 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhccCCCC
Q 008604 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~~ 133 (560)
.+...+|++++.....++++.++.|...+..++.|+|+++++.+|++||+++.
T Consensus 222 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~ 274 (277)
T PRK08258 222 FAHGMTKTMLHQEWDMGLEEAIEAEAQAQAICMQTEDFRRAYEAFVAKRKPVF 274 (277)
T ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence 37788999999888889999999999999999999999999999999998764
No 85
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=99.28 E-value=6.6e-12 Score=120.42 Aligned_cols=97 Identities=24% Similarity=0.269 Sum_probs=90.1
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|++||++++|+||+++||||+|||.++++.+|..|+++|+.++ |
T Consensus 191 ~~ltg~~~~AqeA~~~GlVn~Vvp~~~~l~eAv~l~~~Ia~~~-~----------------------------------- 234 (290)
T KOG1680|consen 191 MILTGRRLGAQEAKKIGLVNKVVPSGDALGEAVKLAEQIAKNS-P----------------------------------- 234 (290)
T ss_pred HHHhcCcccHHHHHhCCceeEeecchhHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5799999999999999999999999999999999999999963 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhccCCCC
Q 008604 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~~ 133 (560)
.++.+.|+.++.+.+.+..+++..|...|...+.+++.+|++.+|.+||++++
T Consensus 235 ~~v~~~K~svn~~~e~~l~e~l~~e~~~~~s~~~~~d~~Eg~~~f~~kr~~~~ 287 (290)
T KOG1680|consen 235 LVVRADKESVNAAYETTLFEGLELERDLFGSTFATEDRLEGMTAFAEKRKPKF 287 (290)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHhhhhhhhhhhhhHHHHHHHHHhcccCCccc
Confidence 37778999999999999999999999999999999999999999999888765
No 86
>PRK08139 enoyl-CoA hydratase; Validated
Probab=99.28 E-value=1e-11 Score=124.17 Aligned_cols=97 Identities=16% Similarity=0.190 Sum_probs=88.5
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|+|||++++|+||+++||||+|||++++++.+.++|++++..+ |
T Consensus 167 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 210 (266)
T PRK08139 167 MLLTGEFIDAATAREWGLVNRVVPADALDAAVARLAAVIAAKS-P----------------------------------- 210 (266)
T ss_pred HHHcCCccCHHHHHHcCCccEeeChhHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999852 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhccCCCC
Q 008604 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~~ 133 (560)
.+...+|++++.....++++++..|.+.+..++.++++++++++|++||+++.
T Consensus 211 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 263 (266)
T PRK08139 211 AAVRIGKEAFYRQAEMPLADAYAYAGDVMAENMMAEDAEEGIDAFLEKRPPEW 263 (266)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence 37778999999988888999999999999999999999999999999987654
No 87
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=99.27 E-value=7.6e-12 Score=123.85 Aligned_cols=95 Identities=17% Similarity=0.136 Sum_probs=86.3
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|+|||++++|+||+++||||+|||++++++.+.++|++++..+ |
T Consensus 155 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 198 (249)
T PRK07938 155 LFFTAATITAAELHHFGSVEEVVPRDQLDEAALEVARKIAAKD-T----------------------------------- 198 (249)
T ss_pred HHHhCCcCCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999852 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhccCC
Q 008604 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGT 131 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~ 131 (560)
.++..+|++++.....+++++++.|...+..++.++|+++++.+|++||++
T Consensus 199 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p 249 (249)
T PRK07938 199 RVIRAAKEALNGIDPQDVERSYRWEQGFTFELNLAGVSDEHRDAFVEKRKA 249 (249)
T ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHhcCCC
Confidence 377789999988877889999999999999999999999999999999864
No 88
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.27 E-value=3.8e-10 Score=116.18 Aligned_cols=205 Identities=16% Similarity=0.108 Sum_probs=135.5
Q ss_pred hHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccCCCEEEEeccCC
Q 008604 159 GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIEN 237 (560)
Q Consensus 159 G~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVIeav~e~ 237 (560)
|.+||..|+++|++|++||++++.++... .+...+.| ++.+++. +.+.+||+||.|+|..
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~------~~~l~~~G-------------i~~asd~~eaa~~ADvVIlaVP~~ 92 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEEL------WKKVEDAG-------------VKVVSDDAEAAKHGEIHILFTPFG 92 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHH------HHHHHHCC-------------CEEeCCHHHHHhCCCEEEEECCCc
Confidence 89999999999999999999998654311 11122223 2333343 5678999999999965
Q ss_pred hHHHHHHHHHHHhhcCCCceeeccCCcccHHH----HHhhccCCCcEeecccCCCCCC----CCeEEEEeCC------CC
Q 008604 238 VSLKQQIFADLEKYCPPHCILASNTSTIDLNL----IGERTYSKDRIVGAHFFSPAHV----MPLLEIVRTN------QT 303 (560)
Q Consensus 238 ~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~~----la~~~~~~~r~~g~hf~~P~~~----~~lvEiv~g~------~t 303 (560)
. ..+.++..+.+.++++++|+ ++|+.++.. +.+.+..+.+.+|+||+.|... ..-++++.+. ..
T Consensus 93 ~-~v~~Vl~~L~~~L~~g~IVI-d~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~Gae~g~l~Vm~gg~t~~~~~~ 170 (342)
T PRK12557 93 K-KTVEIAKNILPHLPENAVIC-NTCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPGTPQHGHYVIAGKTTNGTELA 170 (342)
T ss_pred H-HHHHHHHHHHhhCCCCCEEE-EecCCCHHHHHHHHHHHhcccccccCeeecCCccccccccchheEEeCCCcccccCC
Confidence 4 45667788988899998876 566666553 3345554556778888776532 2234555543 33
Q ss_pred cHHHHHHHHHHHHhcCCceEEecCcccc---chhchHHHH----HHHHHHHHH-cCCCHHHHHHHHH-hcCCCccHHHHH
Q 008604 304 SPQVIVDLLDIGKKIKKTPIVVGNCTGF---AVNRMFFPY----TQAAFLLVE-RGTDLYLIDRAIT-KFGMPMGPFRLA 374 (560)
Q Consensus 304 ~~e~~~~~~~l~~~lGk~~i~v~d~~G~---i~nri~~~~----~~ea~~l~~-~G~~~~dID~a~~-~~G~~~GPf~~~ 374 (560)
+++.++.++++++.+|+.+++++...|. .+|+++.+. ..|++.+.+ .|.+|.+.-.-+- .. -.|--.++
T Consensus 171 ~~e~~e~v~~LL~a~G~~v~~~~~g~~~~vk~~~n~l~av~~a~~aE~~~l~~~~~~~p~~~~~~~~~~~--~~~~a~l~ 248 (342)
T PRK12557 171 TEEQIEKCVELAESIGKEPYVVPADVVSAVADMGSLVTAVALSGVLDYYSVGTKIIKAPKEMIEKQILMT--LQTMASLV 248 (342)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH--HHHHHHHH
Confidence 8899999999999999988888743332 355665544 477777775 4566655544432 21 13566677
Q ss_pred HHhhhHHHHHHH
Q 008604 375 DLVGFGVAIATG 386 (560)
Q Consensus 375 D~~Gld~~~~~~ 386 (560)
-..|+|...+.+
T Consensus 249 ~~~~~~~~~~~~ 260 (342)
T PRK12557 249 ETSGVDGLLKAL 260 (342)
T ss_pred HHhChHHHHHhc
Confidence 777777665544
No 89
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=99.26 E-value=1.5e-11 Score=122.78 Aligned_cols=97 Identities=19% Similarity=0.193 Sum_probs=88.2
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|+|||++++|+||+++||||+|||++++++++.+++++++..+ |
T Consensus 164 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~~~~~-~----------------------------------- 207 (263)
T PRK07799 164 LLLTGRHITAAEAKEIGLIGHVVPDGQALDKALELAELINANG-P----------------------------------- 207 (263)
T ss_pred HHHcCCCCCHHHHHHcCCccEecCcchHHHHHHHHHHHHHhcC-h-----------------------------------
Confidence 5799999999999999999999999999999999999998852 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhccCCCC
Q 008604 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~~ 133 (560)
.++..+|++++.....+++++++.|.+.+..++.++++++++++|++||+++.
T Consensus 208 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~~ 260 (263)
T PRK07799 208 LAVQAILRTIRETEGMHENEAFKIDTKIGIPVFLSEDAKEGPRAFAEKRAPNF 260 (263)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCCC
Confidence 37788999999888888999999999999999999999999999999887654
No 90
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=99.26 E-value=1.6e-11 Score=122.70 Aligned_cols=97 Identities=21% Similarity=0.199 Sum_probs=88.0
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|+|+|++++|+||+++||||+|||++++++++.++|++++..+ |
T Consensus 163 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~-~----------------------------------- 206 (262)
T PRK08140 163 LALLGEKLSAEQAEQWGLIWRVVDDAALADEAQQLAAHLATQP-T----------------------------------- 206 (262)
T ss_pred HHHcCCCcCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhccCCCC
Q 008604 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~~ 133 (560)
.++..+|++++.....+++++++.|...+..++.|+++++++.+|++||++..
T Consensus 207 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p~~ 259 (262)
T PRK08140 207 RGLALIKQAMNASATNTLDAQLDLERDLQREAGRSADYAEGVSAFLEKRAPRF 259 (262)
T ss_pred HHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence 37778999999888889999999999999999999999999999999987653
No 91
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=99.26 E-value=1.8e-11 Score=121.94 Aligned_cols=97 Identities=24% Similarity=0.310 Sum_probs=88.1
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|+|+|++++|+||+++||||+|||++++++.+.++|++++..+ +
T Consensus 159 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~------------------------------------~ 202 (258)
T PRK09076 159 MILCGERVDAATALRIGLVEEVVEKGEAREAALALAQKVANQS------------------------------------P 202 (258)
T ss_pred HHHcCCcCCHHHHHHCCCCceecCchhHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999999852 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhccCCCC
Q 008604 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~~ 133 (560)
.++..+|++++.....++++.++.|.+.+..++.++++++++.+|++||+++.
T Consensus 203 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~ 255 (258)
T PRK09076 203 SAVAACKTLIQAARNGPRAAALALERELFVDLFDTEDQREGVNAFLEKRAPQW 255 (258)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence 47788999999887788999999999999999999999999999999987654
No 92
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=99.26 E-value=1.7e-11 Score=122.11 Aligned_cols=97 Identities=25% Similarity=0.309 Sum_probs=88.5
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|+|+|++++|++|+++||||+|||++++++.+.+++++++..+ |
T Consensus 158 lll~g~~~~a~eA~~~GLv~~vv~~~~~~~~a~~~a~~l~~~~-~----------------------------------- 201 (257)
T PRK06495 158 MMLTGYRVPAAELYRRGVIEACLPPEELMPEAMEIAREIASKS-P----------------------------------- 201 (257)
T ss_pred HHHcCCeeCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999852 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhccCCCC
Q 008604 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~~ 133 (560)
.+...+|++++.....+++++++.|...+..++.|++.++++.+|++||++..
T Consensus 202 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~af~~kr~p~~ 254 (257)
T PRK06495 202 LATRLAKDALNTIENMSLRDGYRYEQDITAKLAKTEDAKEAQRAFLEKRPPVF 254 (257)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhccCCCCC
Confidence 47788999999888889999999999999999999999999999999987754
No 93
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=99.25 E-value=1.7e-11 Score=122.22 Aligned_cols=97 Identities=27% Similarity=0.424 Sum_probs=88.6
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|+++|++++|+||+++||||+|||++++++.|.+++++++..+ |
T Consensus 161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 204 (260)
T PRK05809 161 LIYTGDMINAEEALRIGLVNKVVEPEKLMEEAKALANKIAANA-P----------------------------------- 204 (260)
T ss_pred HHHhCCCCCHHHHHHcCCCCcccChHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999852 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhccCCCC
Q 008604 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~~ 133 (560)
.++..+|++++.+...+++++++.|.+.+..++.|+++++++++|++||+++.
T Consensus 205 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~~ 257 (260)
T PRK05809 205 IAVKLCKDAINRGMQVDIDTAVAIEAEDFGECFSTEDQTEGMTAFVEKREKNF 257 (260)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCC
Confidence 47888999999888889999999999999999999999999999999987654
No 94
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=99.25 E-value=1.8e-11 Score=122.58 Aligned_cols=97 Identities=18% Similarity=0.214 Sum_probs=88.1
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|+|||++++|+||+++||||+|||++++++++.++|++++..+ |
T Consensus 170 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~----------------------------------- 213 (269)
T PRK06127 170 LFYTARRFDAAEALRIGLVHRVTAADDLETALADYAATIAGNA-P----------------------------------- 213 (269)
T ss_pred HHHcCCCCCHHHHHHcCCCCEeeCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhccCCCC
Q 008604 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~~ 133 (560)
.++..+|++++.....++++.++.|...+..++.|+++++++.+|++||++..
T Consensus 214 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p~~ 266 (269)
T PRK06127 214 LTLRAAKRAIAELLKDEPERDMAACQALVAACFDSEDYREGRAAFMEKRKPVF 266 (269)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCC
Confidence 37778999999888888999999999999999999999999999999987654
No 95
>PLN02256 arogenate dehydrogenase
Probab=99.25 E-value=1.8e-10 Score=116.92 Aligned_cols=153 Identities=13% Similarity=0.066 Sum_probs=109.3
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-c-
Q 008604 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F- 224 (560)
Q Consensus 147 ~~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~- 224 (560)
.++|+|||+|.||.++|..+.+.|++|+++|++... +.+. +.|. ...++.+. +
T Consensus 36 ~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~-----------~~gv-------------~~~~~~~e~~~ 90 (304)
T PLN02256 36 KLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAA-----------ELGV-------------SFFRDPDDFCE 90 (304)
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHH-----------HcCC-------------eeeCCHHHHhh
Confidence 358999999999999999999999999999998632 1111 1121 11233332 3
Q ss_pred cCCCEEEEeccCChHHHHHHHHHH-HhhcCCCceeeccCC--cccHHHHHhhccCCCcEeecccCCCCCCC------CeE
Q 008604 225 KDVDMVIEAIIENVSLKQQIFADL-EKYCPPHCILASNTS--TIDLNLIGERTYSKDRIVGAHFFSPAHVM------PLL 295 (560)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~~~~~l-~~~~~~~~ii~sntS--sl~i~~la~~~~~~~r~~g~hf~~P~~~~------~lv 295 (560)
.+||+||.|+|. ..-..++.++ ...++++++|++-+| +.++..+...++...+|+|+|++.++... .-+
T Consensus 91 ~~aDvVilavp~--~~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~~~V~~HPmaG~e~~~~~~~~~~~ 168 (304)
T PLN02256 91 EHPDVVLLCTSI--LSTEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEFDILCTHPMFGPESGKGGWAGLPF 168 (304)
T ss_pred CCCCEEEEecCH--HHHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCCCCeEEecCCCCCCCCCccccCCCeE
Confidence 469999999994 3456777777 566788999887777 35566777666555689999999766532 111
Q ss_pred EEEeC----CCCcHHHHHHHHHHHHhcCCceEEec
Q 008604 296 EIVRT----NQTSPQVIVDLLDIGKKIKKTPIVVG 326 (560)
Q Consensus 296 Eiv~g----~~t~~e~~~~~~~l~~~lGk~~i~v~ 326 (560)
-+.+. +.++++.++.+..+++.+|..++.+.
T Consensus 169 ~~~~~~i~~~~~~~~~~~~l~~l~~~lGa~v~~~~ 203 (304)
T PLN02256 169 VYDKVRIGDEGEREARCERFLDIFEEEGCRMVEMS 203 (304)
T ss_pred EEecceecCCCCCHHHHHHHHHHHHHCCCEEEEeC
Confidence 11111 56788899999999999999998885
No 96
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=99.25 E-value=2.1e-11 Score=121.19 Aligned_cols=97 Identities=22% Similarity=0.237 Sum_probs=87.7
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|+|+|++++|+||+++||||+|||++++++.+.+++++++..+ |
T Consensus 155 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~----------------------------------- 198 (254)
T PRK08252 155 LALTGDMLTAERAHELGLVNRLTEPGQALDAALELAERIAANG-P----------------------------------- 198 (254)
T ss_pred HHHcCCccCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998842 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhccCCCC
Q 008604 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~~ 133 (560)
.+...+|++++.+...++++.++.|...+..++.++++++++.+|++||+++.
T Consensus 199 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~ 251 (254)
T PRK08252 199 LAVAASKRIVVESGDWSEDEMFARQRELIAPVFTSADAKEGATAFAEKRAPVW 251 (254)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence 37778999999887788999999999999999999999999999999887653
No 97
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=99.24 E-value=1.8e-11 Score=121.73 Aligned_cols=94 Identities=15% Similarity=0.198 Sum_probs=86.2
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|+++|++++|+||+++||||+|||++++.+.+.++|++++..+ |
T Consensus 163 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 206 (256)
T PRK06143 163 LLLTGETIDAAQALAWGLVDRVVPLAELDAAVERLAASLAGCG-P----------------------------------- 206 (256)
T ss_pred HHHcCCcCCHHHHHHCCCcCeecCHHHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence 5799999999999999999999999999999999999999852 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhccC
Q 008604 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRG 130 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~ 130 (560)
.+...+|+.++.....++++++..|.+.+..++.|+|+++++++|++||+
T Consensus 207 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~ 256 (256)
T PRK06143 207 QALRQQKRLLREWEDMPLDVAIDDSVAEFGAAFLTGEPQRHMAAFLNRKR 256 (256)
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhcC
Confidence 37778999999888888999999999999999999999999999999874
No 98
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=99.24 E-value=2.4e-11 Score=120.82 Aligned_cols=97 Identities=25% Similarity=0.326 Sum_probs=88.3
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|+|+|++++|+||+++||||+|||++++++.|.++|++++..+ |
T Consensus 156 l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~-~----------------------------------- 199 (255)
T PRK09674 156 MVLTGESITAQQAQQAGLVSEVFPPELTLERALQLASKIARHS-P----------------------------------- 199 (255)
T ss_pred HHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998852 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhccCCCC
Q 008604 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~~ 133 (560)
.++..+|+.++.....+++++++.|.+.+..++.++++++++.+|++||+++.
T Consensus 200 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~i~af~~kr~p~~ 252 (255)
T PRK09674 200 LALRAAKQALRQSQEVDLQAGLAQERQLFTLLAATEDRHEGISAFLEKRTPDF 252 (255)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCC
Confidence 37788999999888888999999999999999999999999999999987654
No 99
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=99.24 E-value=2.1e-11 Score=121.33 Aligned_cols=97 Identities=27% Similarity=0.339 Sum_probs=87.7
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|+|||++++|+||+++||||+|||++++.+++.+++++++..+ |
T Consensus 156 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 199 (255)
T PRK06563 156 YLLTGDEFDAQEALRLGLVQEVVPPGEQLERAIELAERIARAA-P----------------------------------- 199 (255)
T ss_pred HHHcCCCcCHHHHHHcCCCcEeeCHHHHHHHHHHHHHHHHhcC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998742 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhccCCCC
Q 008604 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~~ 133 (560)
.+...+|++++.....++.++++.|...+..++.++++++++.+|++||++..
T Consensus 200 ~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 252 (255)
T PRK06563 200 LGVQATLASARAAVREGEAAAAAQLPPELRPLFTSEDAKEGVQAFLERRPARF 252 (255)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence 37778899998887888999999999999999999999999999999987653
No 100
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.24 E-value=1.3e-10 Score=124.27 Aligned_cols=188 Identities=15% Similarity=0.167 Sum_probs=125.1
Q ss_pred EEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc----ccc
Q 008604 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY----ESF 224 (560)
Q Consensus 149 ~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~----~~~ 224 (560)
+|+|||+|.||.+||..|+++|++|++||+++++.+...+. ...|. .+....+. +.+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~--------~~~g~-----------~~~~~~s~~e~v~~l 61 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAE--------HAKGK-----------KIVGAYSIEEFVQSL 61 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhh--------ccCCC-----------CceecCCHHHHHhhc
Confidence 48999999999999999999999999999999987654311 00010 01111222 234
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccHH--HHHhhccCCCcEeecccCC-CCCC-------CCe
Q 008604 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN--LIGERTYSKDRIVGAHFFS-PAHV-------MPL 294 (560)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~--~la~~~~~~~r~~g~hf~~-P~~~-------~~l 294 (560)
..+|+||.+||.+..+. .++.++.+.+.++.||+..+++.+.. .....+. -.|.||+. |+.. .+
T Consensus 62 ~~~dvIil~v~~~~~v~-~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~----~~gi~fvdapVsGG~~gA~~G~- 135 (467)
T TIGR00873 62 ERPRKIMLMVKAGAPVD-AVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELK----AKGILFVGSGVSGGEEGARKGP- 135 (467)
T ss_pred CCCCEEEEECCCcHHHH-HHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHH----hcCCEEEcCCCCCCHHHHhcCC-
Confidence 67999999999876554 46688888888888887555444433 2333331 12566652 4432 23
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhcCCce------EEecC-cccc---chhchH-HH---HHHHHHHHHH--cCCCHHHHH
Q 008604 295 LEIVRTNQTSPQVIVDLLDIGKKIKKTP------IVVGN-CTGF---AVNRMF-FP---YTQAAFLLVE--RGTDLYLID 358 (560)
Q Consensus 295 vEiv~g~~t~~e~~~~~~~l~~~lGk~~------i~v~d-~~G~---i~nri~-~~---~~~ea~~l~~--~G~~~~dID 358 (560)
-++.| .++++++.++++++.++... .++++ ..|. ++|+.+ .. .+.|++.++. .|++++++-
T Consensus 136 -~im~G--G~~~a~~~~~p~L~~ia~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~ 212 (467)
T TIGR00873 136 -SIMPG--GSAEAWPLVAPIFQKIAAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIA 212 (467)
T ss_pred -cCCCC--CCHHHHHHHHHHHHHHhhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 23333 37899999999999998763 56765 3342 455443 33 3689999873 688999998
Q ss_pred HHHHhc
Q 008604 359 RAITKF 364 (560)
Q Consensus 359 ~a~~~~ 364 (560)
.++..+
T Consensus 213 ~v~~~w 218 (467)
T TIGR00873 213 EVFTEW 218 (467)
T ss_pred HHHHHh
Confidence 888643
No 101
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=99.23 E-value=2.7e-11 Score=121.32 Aligned_cols=97 Identities=20% Similarity=0.152 Sum_probs=87.9
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|+|||++++|+||+++||||+|||++++++.+.++|++++..+ |
T Consensus 167 l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~-~----------------------------------- 210 (266)
T PRK05981 167 LSLLGEKLPAETALQWGLVNRVVDDAELMAEAMKLAHELANGP-T----------------------------------- 210 (266)
T ss_pred HHHhCCCcCHHHHHHcCCceEeeCHhHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998842 1
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhccCCCC
Q 008604 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~~ 133 (560)
.++..+|++++.....++.++++.|...+..++.|+|+++++.+|++||+++.
T Consensus 211 ~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~~ 263 (266)
T PRK05981 211 VALGLIRKLYWDSPENDFEEQLNLEREAQRIAGKTEDFKEGVGAFLQKRPAQF 263 (266)
T ss_pred HHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence 37778999998887888999999999999999999999999999999987754
No 102
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=99.23 E-value=2.6e-11 Score=121.09 Aligned_cols=97 Identities=20% Similarity=0.237 Sum_probs=86.4
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|+|||++++|+||+++||||+|||++++.+.+.+++++++..+ |
T Consensus 163 lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~-~----------------------------------- 206 (262)
T PRK07468 163 VFMSARLFDAEEAVRLGLLSRVVPAERLDAAVEAEVTPYLSCA-P----------------------------------- 206 (262)
T ss_pred HHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcC-H-----------------------------------
Confidence 5799999999999999999999999999999999999998842 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhccCCCC
Q 008604 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~~ 133 (560)
.+...+|++++.......+..++.|...+..++.|+++++++.+|++||+++.
T Consensus 207 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~~ 259 (262)
T PRK07468 207 GAVAAAKALVRALGAPIDEAVIDATIEALADTWETEEAREGIAAFFDKRAPAW 259 (262)
T ss_pred HHHHHHHHHHHhhhccChHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCC
Confidence 37778899998776566788899999999999999999999999999997754
No 103
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=99.23 E-value=3.1e-11 Score=120.44 Aligned_cols=97 Identities=20% Similarity=0.266 Sum_probs=88.3
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|+|+|++++|+||+++||||+|||++++++.+.+++++++..+ +
T Consensus 161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~------------------------------------~ 204 (260)
T PRK07657 161 LIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAIEIAEKIASNG------------------------------------P 204 (260)
T ss_pred HHHhCCCCCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999998842 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhccCCCC
Q 008604 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~~ 133 (560)
.|+..+|++++.....++++++..|...+..++.|+++++++++|+++|+++.
T Consensus 205 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~~r~~~~ 257 (260)
T PRK07657 205 IAVRQAKEAISNGIQVDLHTGLQIEKQAYEGTIPTKDRLEGLQAFKEKRKPMY 257 (260)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCCC
Confidence 37888999999888888999999999999999999999999999999987653
No 104
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=99.23 E-value=3e-11 Score=120.97 Aligned_cols=97 Identities=22% Similarity=0.236 Sum_probs=88.0
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|+++|++++|+||+++||||+|||++++++++.+++++++..+ |
T Consensus 167 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~----------------------------------- 210 (266)
T PRK09245 167 MAFTGDAIDAATALEWGLVSRVVPADQLLPAARALAERIAANP-P----------------------------------- 210 (266)
T ss_pred HHHcCCCcCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999852 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhccCCCC
Q 008604 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~~ 133 (560)
.+...+|++++.....++++.++.|.+.+..++.|+|+++++.+|++||++..
T Consensus 211 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 263 (266)
T PRK09245 211 HALRLTKRLLREGQHASLDTLLELSAAYQALAHHTADHREAVDAFLEKRPPVF 263 (266)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHHcCCCCCC
Confidence 37788999999888888999999999999999999999999999999987654
No 105
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=99.22 E-value=2.9e-11 Score=120.78 Aligned_cols=97 Identities=19% Similarity=0.187 Sum_probs=87.2
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|+|+|++++|+||+++||||+|||++++.+++.++|++++..+ +
T Consensus 162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 205 (262)
T PRK05995 162 YFLTAERFDAAEALRLGLVHEVVPAEALDAKVDELLAALVANS------------------------------------P 205 (262)
T ss_pred HHHcCCccCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5799999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhhCChHHH-HHHHHHHHhHHhcCHHHHHHHHHHHhccCCCC
Q 008604 81 THPIVCIDVVEAGVVSGPRAG-LQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~-l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~~ 133 (560)
.+...+|++++.....++.+. ++.|...+..++.|+++++++.+|++||++..
T Consensus 206 ~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~~kr~p~~ 259 (262)
T PRK05995 206 QAVRAGKRLVRDVAGRPIDAALIADTASRIALIRATEEAREGVAAFLEKRKPAW 259 (262)
T ss_pred HHHHHHHHHHHhhhcCChhhHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCC
Confidence 377889999998877888888 88999999999999999999999999987654
No 106
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=99.22 E-value=3e-11 Score=121.42 Aligned_cols=97 Identities=24% Similarity=0.194 Sum_probs=87.1
Q ss_pred CcccCCCCChHHHHhCCCcceecCC-cchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAP-NQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPN 79 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~-~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (560)
|+|||++++|+||+++||||+|||+ +++.+++.++|++++..+ |
T Consensus 175 l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~~~~~a~~ia~~~-p---------------------------------- 219 (275)
T PLN02664 175 LALTGRRFSGSEAKELGLVSRVFGSKEDLDEGVRLIAEGIAAKS-P---------------------------------- 219 (275)
T ss_pred HHHhCCCCCHHHHHHcCCCceeeCChhHHHHHHHHHHHHHHhCC-H----------------------------------
Confidence 5789999999999999999999995 889999999999999852 2
Q ss_pred CCcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhccCCCC
Q 008604 80 LTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (560)
Q Consensus 80 ~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~~ 133 (560)
.+...+|++++.....+++++++.|...+..++.|+++++++.+|++||++..
T Consensus 220 -~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~~ 272 (275)
T PLN02664 220 -LAVTGTKAVLLRSRELSVEQGLDYVATWNSAMLVSDDLNEAVSAQIQKRKPVF 272 (275)
T ss_pred -HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCCC
Confidence 37778899999887788999999999999999999999999999999987654
No 107
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=99.22 E-value=2.8e-11 Score=120.60 Aligned_cols=97 Identities=24% Similarity=0.306 Sum_probs=86.2
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|+|||++++|+||+++||||+|||++++++.+.++|++++..+ |
T Consensus 158 lll~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 201 (259)
T PRK06494 158 MILTGRRVTAREGLELGFVNEVVPAGELLAAAERWADDILACS-P----------------------------------- 201 (259)
T ss_pred HHHcCCcCCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhcC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999852 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHH--HHHHhHHhcCHHHHHHHHHHHhccCCCC
Q 008604 81 THPIVCIDVVEAGVVSGPRAGLQKE--AEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E--~~~f~~l~~s~~~~~~~~aF~~kr~~~~ 133 (560)
.++..+|++++.....+++++++.| ...+..++.|+++++++.+|++||+++.
T Consensus 202 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~eg~~af~~kr~p~~ 256 (259)
T PRK06494 202 LSIRASKQAVYRGLEVSLEEAITAQRDYPAVEARRASQDYIEGPKAFAEKRPPRW 256 (259)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCCC
Confidence 3778899999988888899999999 5578899999999999999999887653
No 108
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=99.22 E-value=3e-11 Score=121.30 Aligned_cols=97 Identities=21% Similarity=0.210 Sum_probs=87.1
Q ss_pred CcccCCCCChHHHHhCCCcceecCC-cchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAP-NQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPN 79 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~-~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (560)
|+++|++++|+||+++||||+|||+ +++++++.+++++++..+ |
T Consensus 173 l~l~g~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~ia~~~-~---------------------------------- 217 (272)
T PRK06142 173 LALTGRDIDAAEAEKIGLVNRVYDDADALLAAAHATAREIAAKS-P---------------------------------- 217 (272)
T ss_pred HHHhCCCcCHHHHHHcCCccEecCCHHHHHHHHHHHHHHHHhCC-H----------------------------------
Confidence 5789999999999999999999986 889999999999998842 2
Q ss_pred CCcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhccCCCC
Q 008604 80 LTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (560)
Q Consensus 80 ~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~~ 133 (560)
.++..+|+++++....+++++++.|...+..++.|+++++++.+|++||+++.
T Consensus 218 -~a~~~~K~~l~~~~~~~l~~~~~~~~~~~~~~~~~~d~~egv~af~~kr~p~~ 270 (272)
T PRK06142 218 -LAVRGTKEVLDYMRDHRVADGLRYVATWNAAMLPSKDLTEAIAAHMEKRPPEF 270 (272)
T ss_pred -HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhcCCCCCC
Confidence 37778999999887888999999999999999999999999999999987653
No 109
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=99.21 E-value=2.3e-11 Score=122.21 Aligned_cols=98 Identities=19% Similarity=0.193 Sum_probs=88.9
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|+|||+.++|+||+++||||+|||.+++++.+.+++++++..+ |
T Consensus 172 llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~----------------------------------- 215 (278)
T PLN03214 172 LLLRGRLVRPAEAKQLGLIDEVVPAAALMEAAASAMERALKLP-S----------------------------------- 215 (278)
T ss_pred HHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence 5799999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhccCCCCC
Q 008604 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV 134 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~~~ 134 (560)
.+...+|++++.....+++++++.|.+.+..++.|+++++++.+|++|.+.+|.
T Consensus 216 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~aflek~~~~~~ 269 (278)
T PLN03214 216 AARAATKALLREEFSAAWEAYYEEEAKGGWKMLSEPSIIKALGGVMERLSSGKE 269 (278)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccc
Confidence 377789999998888889999999999999999999999999999999887764
No 110
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=99.20 E-value=4.3e-11 Score=119.41 Aligned_cols=96 Identities=21% Similarity=0.330 Sum_probs=87.3
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|+|||++++|+||+++||||+|||++++++++.++|++++..+ |
T Consensus 162 l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~-~----------------------------------- 205 (260)
T PRK07511 162 LLLEGKPISAERLHALGVVNRLAEPGQALAEALALADQLAAGS-P----------------------------------- 205 (260)
T ss_pred HHHhCCCCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998842 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhccCCC
Q 008604 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~ 132 (560)
.++..+|+.++.+...+++++++.|...+..++.++++++++++|+++|++.
T Consensus 206 ~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~~f~~~r~~~ 257 (260)
T PRK07511 206 NALARIKSLIADAPEATLAAQLEAERDHFVASLHHADALEGIAAFLEKRAPD 257 (260)
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhccCCCC
Confidence 3777889999988888999999999999999999999999999999998764
No 111
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=99.20 E-value=4.3e-11 Score=120.18 Aligned_cols=98 Identities=20% Similarity=0.295 Sum_probs=87.9
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|+|||++++|++|+++||||+|||++++++++.++|++++....|
T Consensus 172 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~p----------------------------------- 216 (272)
T PRK06210 172 LLLSARTFYAEEALRLGLVNRVVPPDELMERTLAYAEDLARNVSP----------------------------------- 216 (272)
T ss_pred HHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcCCH-----------------------------------
Confidence 579999999999999999999999999999999999999873112
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhccCCCC
Q 008604 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~~ 133 (560)
.+...+|++++.....+++++++.|...+..++.++++++++.+|++||++..
T Consensus 217 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~ 269 (272)
T PRK06210 217 ASMAVIKRQLYEDAFQTLAEATARANREMHESLQRPDFIEGVASFLEKRPPRF 269 (272)
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCC
Confidence 37788999999888888999999999999999999999999999999987654
No 112
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=99.19 E-value=2.3e-11 Score=132.08 Aligned_cols=97 Identities=9% Similarity=0.010 Sum_probs=90.1
Q ss_pred cccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCCC
Q 008604 2 MLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNLT 81 (560)
Q Consensus 2 lltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (560)
++||++|+|+||+++||||+|||++++++++.++|+++++.+ | .
T Consensus 446 ~~tg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~ia~~~-p-----------------------------------~ 489 (550)
T PRK08184 446 AKIGQPLDADAAEELGLVTAAPDDIDWEDEVRIALEERASLS-P-----------------------------------D 489 (550)
T ss_pred HHhCCcCCHHHHHHcCCcccccChHHHHHHHHHHHHHHHhCC-H-----------------------------------H
Confidence 589999999999999999999999999999999999999952 2 4
Q ss_pred cHHHHHHHHHHhhhCChHHH-HHHHHHHHhHHhcCHHHHH---HHHHHHhccCCCCC
Q 008604 82 HPIVCIDVVEAGVVSGPRAG-LQKEAEDFQKLLRSETCKS---LVHIFFAQRGTSKV 134 (560)
Q Consensus 82 A~~~~~~~i~~~~~~~~~~~-l~~E~~~f~~l~~s~~~~~---~~~aF~~kr~~~~~ 134 (560)
|+..+|++++.+...+++++ +..|.+.|..++.|+|+++ ++++|++||+++..
T Consensus 490 a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ekr~~~f~ 546 (550)
T PRK08184 490 ALTGMEANLRFAGPETMETRIFGRLTAWQNWIFQRPNAVGEKGALKVYGTGQKAQFD 546 (550)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCcccccchHHHHhccCCCCCCC
Confidence 88899999999999999999 9999999999999999999 99999999998653
No 113
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.19 E-value=7.1e-10 Score=114.38 Aligned_cols=165 Identities=17% Similarity=0.194 Sum_probs=103.7
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCH--HHHHhhhcccccccCcc-c
Q 008604 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQ--EKFEKTISLLTGVLDYE-S 223 (560)
Q Consensus 147 ~~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~--~~~~~~~~~i~~~~~~~-~ 223 (560)
|++|+|||+|.||..+|..|+++|++|++||++++.++...+. +.... ... .....+..+++.+ .
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~-----------~~~~~~~~~~-~~~~~~~~~~~~~~~ 68 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINAD-----------RENPRYLPGI-KLPDNLRATTDLAEA 68 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHc-----------CcccccCCCC-cCCCCeEEeCCHHHH
Confidence 3589999999999999999999999999999998876654321 10000 000 0001233344543 5
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccHH------H-HHhhccCCCcEeecccCCCCC------
Q 008604 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN------L-IGERTYSKDRIVGAHFFSPAH------ 290 (560)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~------~-la~~~~~~~r~~g~hf~~P~~------ 290 (560)
+.+||+||.|++. .....++.++.+.+.+++++++.++++.+. + +.+........ .-...|..
T Consensus 69 ~~~~D~vi~~v~~--~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~--~~~~~P~~~~~~~~ 144 (325)
T PRK00094 69 LADADLILVAVPS--QALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPI--AVLSGPSFAKEVAR 144 (325)
T ss_pred HhCCCEEEEeCCH--HHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCce--EEEECccHHHHHHc
Confidence 6799999999996 356777788888888899887666555442 2 22222110010 11113332
Q ss_pred -CCCeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEecCccc
Q 008604 291 -VMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG 330 (560)
Q Consensus 291 -~~~lvEiv~g~~t~~e~~~~~~~l~~~lGk~~i~v~d~~G 330 (560)
...++.+.. .+.+.++.+.++++..|..+....|..|
T Consensus 145 g~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~d~~g 182 (325)
T PRK00094 145 GLPTAVVIAS---TDEELAERVQELFHSPYFRVYTNTDVIG 182 (325)
T ss_pred CCCcEEEEEe---CCHHHHHHHHHHhCCCCEEEEecCCcch
Confidence 123344433 3688899999999999977766655433
No 114
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=99.19 E-value=4.9e-11 Score=119.00 Aligned_cols=97 Identities=20% Similarity=0.257 Sum_probs=85.9
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|+|+|++++|+||+++||||+|||++++++++.+++++++..+ |
T Consensus 158 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 201 (261)
T PRK03580 158 MVMTGRRMDAEEALRWGIVNRVVPQAELMDRARELAQQLVNSA-P----------------------------------- 201 (261)
T ss_pred HHHhCCccCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999852 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHH----HHhHHhcCHHHHHHHHHHHhccCCCC
Q 008604 81 THPIVCIDVVEAGVVSGPRAGLQKEAE----DFQKLLRSETCKSLVHIFFAQRGTSK 133 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~----~f~~l~~s~~~~~~~~aF~~kr~~~~ 133 (560)
.+...+|++++.....+++++++.|.. .+..++.|+++++++.+|++||+++.
T Consensus 202 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~d~~e~~~af~ekr~~~~ 258 (261)
T PRK03580 202 LAIAALKEIYRETSEMPVEEAYRYIRSGVLKHYPSVLHSEDALEGPRAFAEKRDPVW 258 (261)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHhcCccHHHHHHHHhcCCCCCC
Confidence 377788999988878889999988864 78889999999999999999987654
No 115
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=99.19 E-value=5.8e-11 Score=118.43 Aligned_cols=97 Identities=25% Similarity=0.348 Sum_probs=87.3
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|+++|++++|+||+++||||+|||++++++.|.++|++++..+ |
T Consensus 160 l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~i~~~~-~----------------------------------- 203 (259)
T PRK06688 160 MLLLGEPLSAEEALRIGLVNRVVPAAELDAEADAQAAKLAAGP-A----------------------------------- 203 (259)
T ss_pred HHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998842 1
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhccCCCC
Q 008604 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~~ 133 (560)
.+...+|++++.....+++++++.|.+.+..++.++++++++++|++||+++.
T Consensus 204 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~af~~~~~p~~ 256 (259)
T PRK06688 204 SALRYTKRAINAATLTELEEALAREAAGFGRLLRTPDFREGATAFIEKRKPDF 256 (259)
T ss_pred HHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence 36677889999888889999999999999999999999999999999887653
No 116
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=99.18 E-value=2.7e-11 Score=131.09 Aligned_cols=97 Identities=10% Similarity=-0.002 Sum_probs=89.7
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|+|||++|+|+||++|||||+|||++++++++.++|++++..+ |
T Consensus 441 ~~ltg~~i~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-p----------------------------------- 484 (546)
T TIGR03222 441 RDKIGQALDAEEAERLGLVTAAPDDIDWEDEIRIALEERASFS-P----------------------------------- 484 (546)
T ss_pred HHHhCCCCCHHHHHHcCCcccccCchHHHHHHHHHHHHHHhcC-H-----------------------------------
Confidence 4789999999999999999999999999999999999999952 2
Q ss_pred CcHHHHHHHHHHhhhCChHHH-HHHHHHHHhHHhcCHHHHH---HHHHHHhccCCCC
Q 008604 81 THPIVCIDVVEAGVVSGPRAG-LQKEAEDFQKLLRSETCKS---LVHIFFAQRGTSK 133 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~-l~~E~~~f~~l~~s~~~~~---~~~aF~~kr~~~~ 133 (560)
.|+..+|++++.+...+++++ +..|...|..++.|+|+++ ++.+|++||+++.
T Consensus 485 ~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ekr~p~f 541 (546)
T TIGR03222 485 DALTGLEANLRFAGPETMETRIFGRLTAWQNWIFNRPNAVGENGALKVYGSGKKAQF 541 (546)
T ss_pred HHHHHHHHHHhhcCCcChhhhHHHHHHHHHHHHhcCCcccchhhHHHHHccCCCCCC
Confidence 478889999999999999999 9999999999999999999 9999999998765
No 117
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=99.18 E-value=6.3e-11 Score=121.27 Aligned_cols=126 Identities=21% Similarity=0.400 Sum_probs=96.4
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 008604 147 VKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (560)
Q Consensus 147 ~~~V~VIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (560)
.+||+|||+|.||.++|..++..|+ +|+++|++++.+.. . .++.... ........++..++|+++++
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~-~-----~ld~~~~------~~~~~~~~~I~~~~d~~~l~ 73 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQG-K-----ALDISHS------NVIAGSNSKVIGTNNYEDIA 73 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhH-H-----HHHHHhh------hhccCCCeEEEECCCHHHhC
Confidence 3699999999999999999999996 99999999986532 1 1111111 01111223677678899999
Q ss_pred CCCEEEEec-------------------cCChHHHHHHHHHHHhhcCCC-ceeeccCCcccHHHHHhhccCC-CcEeecc
Q 008604 226 DVDMVIEAI-------------------IENVSLKQQIFADLEKYCPPH-CILASNTSTIDLNLIGERTYSK-DRIVGAH 284 (560)
Q Consensus 226 ~aDlVIeav-------------------~e~~~~k~~~~~~l~~~~~~~-~ii~sntSsl~i~~la~~~~~~-~r~~g~h 284 (560)
+||+||+++ .++..+++++++++.+++++. .|++||++.+....+......| .|++|++
T Consensus 74 ~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg 153 (321)
T PTZ00082 74 GSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA 153 (321)
T ss_pred CCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence 999999955 568889999999999999774 5678999988888877776665 8999985
No 118
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=99.17 E-value=6.5e-11 Score=117.53 Aligned_cols=93 Identities=23% Similarity=0.178 Sum_probs=83.7
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|+|+|++++|+||+++||||+|||++++++.|.++|+++++.+ |
T Consensus 157 lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 200 (254)
T PRK08259 157 LILTGRPVDADEALAIGLANRVVPKGQARAAAEELAAELAAFP-Q----------------------------------- 200 (254)
T ss_pred HHHcCCccCHHHHHHcCCCCEeeChhHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999852 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhccC
Q 008604 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRG 130 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~ 130 (560)
.++..+|++++.....+++++++.|...+..++. +|+++++.+|++|++
T Consensus 201 ~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~-~d~~egi~af~~~~~ 249 (254)
T PRK08259 201 TCLRADRLSALEQWGLPEEAALANEFAHGLAVLA-AEALEGAARFAAGAG 249 (254)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHh-hHHHHHHHHHHhhhc
Confidence 3777889999888778899999999998888887 999999999999876
No 119
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=99.17 E-value=6.1e-11 Score=118.25 Aligned_cols=96 Identities=20% Similarity=0.169 Sum_probs=86.6
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|+|||++++|+||+++||||+|| ++++.+++.+++++++..+ |
T Consensus 162 l~ltg~~~~a~eA~~~Glv~~vv-~~~~~~~a~~~a~~l~~~~-~----------------------------------- 204 (260)
T PRK07659 162 IIWEGKKLSATEALDLGLIDEVI-GGDFQTAAKQKISEWLQKP-L----------------------------------- 204 (260)
T ss_pred HHHhCCccCHHHHHHcCChHHHh-hhHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 57899999999999999999999 7889999999999998852 1
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhccCCCC
Q 008604 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~~ 133 (560)
.++..+|++++.....+++++++.|.+.+..++.|+++++++.+|++||+++.
T Consensus 205 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~ 257 (260)
T PRK07659 205 KAMIETKQIYCELNRSQLEQVLQLEKRAQYAMRQTADHKEGIRAFLEKRLPVF 257 (260)
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCCC
Confidence 37778999998887888999999999999999999999999999999987654
No 120
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=99.16 E-value=7.7e-11 Score=117.79 Aligned_cols=97 Identities=16% Similarity=0.253 Sum_probs=85.0
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|+|||++|+|+||+++||||+|||+++|.+++.++|++++..+ |
T Consensus 164 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-p----------------------------------- 207 (265)
T PRK05674 164 YALTAERFDGRRARELGLLAESYPAAELEAQVEAWIANLLLNS-P----------------------------------- 207 (265)
T ss_pred HHHhCcccCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHhcC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999852 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHH-HHHHHhHHhcCHHHHHHHHHHHhccCCCC
Q 008604 81 THPIVCIDVVEAGVVSGPRAGLQK-EAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~-E~~~f~~l~~s~~~~~~~~aF~~kr~~~~ 133 (560)
.+...+|++++.....++++++.. +...+..++.|+++++++.+|++||+++.
T Consensus 208 ~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~e~~~af~~kr~p~~ 261 (265)
T PRK05674 208 QALRASKDLLREVGDGELSPALRRYCENAIARIRVSAEGQEGLRAFLEKRTPAW 261 (265)
T ss_pred HHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHhcCHHHHHHHHHHHccCCCCC
Confidence 377789999998888888888765 45678889999999999999999987654
No 121
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.16 E-value=3.5e-10 Score=117.09 Aligned_cols=137 Identities=14% Similarity=0.116 Sum_probs=102.1
Q ss_pred eEEEEEcC-ccchHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC-cccc
Q 008604 148 KKVAILGG-GLMGSGIATALILS-NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD-YESF 224 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~~ 224 (560)
++|+|||. |.||.++|..|.+. |++|+.+|++.+. ..+ .+.+
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~~-----------------------------------~~~~~~~v 49 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADPG-----------------------------------SLDPATLL 49 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCccc-----------------------------------cCCHHHHh
Confidence 58999999 99999999999864 9999999985211 111 1457
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHhh---cCCCceeeccCCccc-H-HHHHhhccCCCcEeecccCCCCCC-----CCe
Q 008604 225 KDVDMVIEAIIENVSLKQQIFADLEKY---CPPHCILASNTSTID-L-NLIGERTYSKDRIVGAHFFSPAHV-----MPL 294 (560)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~~~~~l~~~---~~~~~ii~sntSsl~-i-~~la~~~~~~~r~~g~hf~~P~~~-----~~l 294 (560)
.+||+||.|+| +..-.++++++.++ ++++++|+.-+|+-. + ..+ .....+|+|.||+..++. ...
T Consensus 50 ~~aDlVilavP--v~~~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~---~~~~~~fVG~HPMaG~E~s~lf~g~~ 124 (370)
T PRK08818 50 QRADVLIFSAP--IRHTAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAAM---LASQAEVVGLHPMTAPPKSPTLKGRV 124 (370)
T ss_pred cCCCEEEEeCC--HHHHHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHHH---HhcCCCEEeeCCCCCCCCCcccCCCe
Confidence 89999999999 66777888888876 689999987777653 3 333 233347999999975543 333
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhcCCceEEec
Q 008604 295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (560)
Q Consensus 295 vEiv~g~~t~~e~~~~~~~l~~~lGk~~i~v~ 326 (560)
+-++++ ...+.++.++.+++.+|..++.+.
T Consensus 125 ~iltp~--~~~~~~~~v~~l~~~~Ga~v~~~~ 154 (370)
T PRK08818 125 MVVCEA--RLQHWSPWVQSLCSALQAECVYAT 154 (370)
T ss_pred EEEeCC--CchhHHHHHHHHHHHcCCEEEEcC
Confidence 345554 445557889999999999888885
No 122
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=99.15 E-value=9.6e-11 Score=116.53 Aligned_cols=94 Identities=19% Similarity=0.143 Sum_probs=86.1
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|+|+|++++|++|+++||||+|||++++++.+.+++++++..+ |
T Consensus 162 l~l~g~~~sa~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 205 (255)
T PRK07260 162 LAMTGEALTAEKALEYGFVYRVAESEKLEKTCEQLLKKLRRGS-S----------------------------------- 205 (255)
T ss_pred HHHhCCccCHHHHHHcCCcceecCHhHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence 5799999999999999999999999999999999999999842 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhccC
Q 008604 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRG 130 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~ 130 (560)
.+...+|+.++.....++++.+..|...+..++.|+++++++.+|.+||+
T Consensus 206 ~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~ 255 (255)
T PRK07260 206 NSYAAIKSLVWESFFKGWEDYAKLELALQESLAFKEDFKEGVRAFSERRR 255 (255)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Confidence 37778999999888889999999999999999999999999999999874
No 123
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=99.15 E-value=6.7e-11 Score=117.85 Aligned_cols=96 Identities=17% Similarity=0.227 Sum_probs=82.1
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|+++|++++|+||+++||||+|||++++.+++.++|++++..+ |
T Consensus 161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 204 (259)
T TIGR01929 161 IWFLCRQYDAEQALDMGLVNTVVPLADLEKETVRWCREILQKS-P----------------------------------- 204 (259)
T ss_pred HHHhCCccCHHHHHHcCCcccccCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999852 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhccCCCC
Q 008604 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~~ 133 (560)
.++..+|++++..... ....+..|...+..++.|+|+++++.+|++||+++.
T Consensus 205 ~a~~~~K~~l~~~~~~-~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~~ 256 (259)
T TIGR01929 205 MAIRMLKAALNADCDG-QAGLQELAGNATMLFYMTEEGQEGRNAFLEKRQPDF 256 (259)
T ss_pred HHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCC
Confidence 3777888888876443 355566678899999999999999999999987654
No 124
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=99.15 E-value=7.8e-11 Score=120.03 Aligned_cols=122 Identities=21% Similarity=0.351 Sum_probs=91.3
Q ss_pred EEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCC
Q 008604 150 VAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVD 228 (560)
Q Consensus 150 V~VIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD 228 (560)
|+|||+|.||.++|..++..|+ +|+++|++++.+ .+... ... .. ........+++.+++++++++||
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~-~g~~~--dl~-~~--------~~~~~~~~~I~~t~d~~~l~dAD 68 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLP-QGKAL--DIS-QA--------APILGSDTKVTGTNDYEDIAGSD 68 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHH-HHHHH--HHH-Hh--------hhhcCCCeEEEEcCCHHHhCCCC
Confidence 6899999999999999999887 999999997754 22211 000 00 01111224666667888999999
Q ss_pred EEEEec--------------cCChHHHHHHHHHHHhhcCCCc-eeeccCCcccHHHHHhhccC-CCcEeec
Q 008604 229 MVIEAI--------------IENVSLKQQIFADLEKYCPPHC-ILASNTSTIDLNLIGERTYS-KDRIVGA 283 (560)
Q Consensus 229 lVIeav--------------~e~~~~k~~~~~~l~~~~~~~~-ii~sntSsl~i~~la~~~~~-~~r~~g~ 283 (560)
+||+++ +++..+++++++++.++++++. |++||.+.+....+...... |.|++|+
T Consensus 69 iVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGl 139 (300)
T cd01339 69 VVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGM 139 (300)
T ss_pred EEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEe
Confidence 999876 6789999999999999998877 46788887777777666554 5788886
No 125
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=99.14 E-value=1.1e-10 Score=117.17 Aligned_cols=96 Identities=17% Similarity=0.232 Sum_probs=82.1
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|++||++++|+||+++||||+|||++++++++.++|+++++.+ |
T Consensus 171 l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 214 (273)
T PRK07396 171 IWFLCRQYDAQEALDMGLVNTVVPLADLEKETVRWCREMLQNS-P----------------------------------- 214 (273)
T ss_pred HHHhCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999852 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhccCCCC
Q 008604 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~~ 133 (560)
.+...+|++++.... ..+...+.|.+.+..++.|+++++++.+|++||++..
T Consensus 215 ~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~~ 266 (273)
T PRK07396 215 MALRCLKAALNADCD-GQAGLQELAGNATMLFYMTEEAQEGRNAFNEKRQPDF 266 (273)
T ss_pred HHHHHHHHHHHhhhc-cHHHHHHHHHHHHHHHhcChhHHHHHHHHhCCCCCCC
Confidence 377788888877643 3455556788889999999999999999999987754
No 126
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=99.14 E-value=1.1e-10 Score=116.34 Aligned_cols=97 Identities=19% Similarity=0.202 Sum_probs=83.6
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|+|+|++++|+||+++||||+|||++++++.+.+++++++..+ |
T Consensus 160 l~l~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~l~~~~-~----------------------------------- 203 (261)
T PRK11423 160 MFFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKA-P----------------------------------- 203 (261)
T ss_pred HHHcCCCcCHHHHHHcCCcCcccCHHHHHHHHHHHHHHHHhcC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999852 2
Q ss_pred CcHHHHHHHHHHhhh-CCh-HHHHHHHHHHHhHHhcCHHHHHHHHHHHhccCCCC
Q 008604 81 THPIVCIDVVEAGVV-SGP-RAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~-~~~-~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~~ 133 (560)
.+...+|++++.... .+. +..++.|.+.+..++.|+|+++++.+|++||+++.
T Consensus 204 ~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~eg~~af~~kr~p~~ 258 (261)
T PRK11423 204 LAIAVIKEQLRVLGEAHPMNPDEFERIQGLRRAVYDSEDYQEGMNAFLEKRKPVF 258 (261)
T ss_pred HHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHhCChhHHHHHHHHhccCCCCC
Confidence 377788998886543 344 57888899999999999999999999999987654
No 127
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.14 E-value=1.7e-09 Score=114.87 Aligned_cols=195 Identities=17% Similarity=0.152 Sum_probs=125.4
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC-----CHHHHHhhhcccccccCcc
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKM-----TQEKFEKTISLLTGVLDYE 222 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~-----~~~~~~~~~~~i~~~~~~~ 222 (560)
++|+|||+|.||..+|..|+. |++|++||+++++++... .|.. ..++... ..++.++++.+
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~------------~G~~~~~e~~~~~l~~-~g~l~~t~~~~ 72 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK------------NGVDVNLETTEEELRE-ARYLKFTSEIE 72 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH------------CcCCCCCCCCHHHHHh-hCCeeEEeCHH
Confidence 689999999999999999877 699999999999887643 2221 0111111 23566777777
Q ss_pred cccCCCEEEEeccCCh------HHHHHH--HHHHHhhcCCCceeeccCCcccHH---HHH-hhccCCCcEeeccc-----
Q 008604 223 SFKDVDMVIEAIIENV------SLKQQI--FADLEKYCPPHCILASNTSTIDLN---LIG-ERTYSKDRIVGAHF----- 285 (560)
Q Consensus 223 ~~~~aDlVIeav~e~~------~~k~~~--~~~l~~~~~~~~ii~sntSsl~i~---~la-~~~~~~~r~~g~hf----- 285 (560)
.+.+||++|.|||... ++.... .+.+.++++++.+|+ ..||+++. ++. ..+.. ..|.+|
T Consensus 73 ~~~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI-~~STv~pgtt~~~~~~~l~~---~~g~~~~~~~~ 148 (425)
T PRK15182 73 KIKECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVV-YESTVYPGCTEEECVPILAR---MSGMTFNQDFY 148 (425)
T ss_pred HHcCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEE-EecCCCCcchHHHHHHHHHh---ccCCCcCCCee
Confidence 8899999999998652 222222 356888888888775 55666543 221 11111 012211
Q ss_pred --CCCCCC---------CCeEEEEeCCCCcHHHHHHHHHHHHhcC-CceEEecC-ccc---cchhchHH----HHHHHHH
Q 008604 286 --FSPAHV---------MPLLEIVRTNQTSPQVIVDLLDIGKKIK-KTPIVVGN-CTG---FAVNRMFF----PYTQAAF 345 (560)
Q Consensus 286 --~~P~~~---------~~lvEiv~g~~t~~e~~~~~~~l~~~lG-k~~i~v~d-~~G---~i~nri~~----~~~~ea~ 345 (560)
|+|... ..+--++.|. +++..+.+..+++.+. ..++++.+ ..+ .++|+++. +++||+.
T Consensus 149 ~~~~PE~v~~G~a~~~~~~~~riv~G~--~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a 226 (425)
T PRK15182 149 VGYSPERINPGDKKHRLTNIKKITSGS--TAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELA 226 (425)
T ss_pred EeeCCCcCCCCcccccccCCCeEEECC--CHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123211 1222256663 4778889999998875 33566654 233 35666665 4579998
Q ss_pred HHHH-cCCCHHHHHHHHH
Q 008604 346 LLVE-RGTDLYLIDRAIT 362 (560)
Q Consensus 346 ~l~~-~G~~~~dID~a~~ 362 (560)
.+.+ .|+++.++-.++.
T Consensus 227 ~lae~~GiD~~~v~~a~~ 244 (425)
T PRK15182 227 IIFNRLNIDTEAVLRAAG 244 (425)
T ss_pred HHHHHhCcCHHHHHHHhc
Confidence 8885 6899999988875
No 128
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=99.13 E-value=1.4e-10 Score=116.67 Aligned_cols=97 Identities=23% Similarity=0.183 Sum_probs=81.6
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|+|+|++++|+||+++||||+|||++++++++.++|++++..+ |
T Consensus 174 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-p----------------------------------- 217 (276)
T PRK05864 174 IMLTGRDVDAEEAERIGLVSRQVPDEQLLDTCYAIAARMAGFS-R----------------------------------- 217 (276)
T ss_pred HHHcCCccCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999852 2
Q ss_pred CcHHHHHHHHHHhhhC-ChHHHHHHHHHHHh-HHhcCHHHHHHHHHHHhccCCCC
Q 008604 81 THPIVCIDVVEAGVVS-GPRAGLQKEAEDFQ-KLLRSETCKSLVHIFFAQRGTSK 133 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~~-~~~~~l~~E~~~f~-~l~~s~~~~~~~~aF~~kr~~~~ 133 (560)
.++..+|++++..... ++++.+..|..... .++.|+++++++.+|++||++..
T Consensus 218 ~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~d~~e~~~af~~kr~p~~ 272 (276)
T PRK05864 218 PGIELTKRTLWSGLDAASLEAHMQAEGLGQLFVRLLTANFEEAVAARAEKRPPVF 272 (276)
T ss_pred HHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCCC
Confidence 3777889999877654 68888887875322 35789999999999999987654
No 129
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=99.13 E-value=1.4e-10 Score=116.40 Aligned_cols=94 Identities=19% Similarity=0.193 Sum_probs=83.1
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|+|||++++|+||+++||||+|||+++|++.+.++|++++..+ |
T Consensus 168 llltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-p----------------------------------- 211 (275)
T PRK09120 168 YIMTGETFTGRKAAEMGLVNESVPLAQLRARTRELAAKLLEKN-P----------------------------------- 211 (275)
T ss_pred HHhcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5799999999999999999999999999999999999999852 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHH--HHhHHhcCH-HHHHHHHHHHhccC
Q 008604 81 THPIVCIDVVEAGVVSGPRAGLQKEAE--DFQKLLRSE-TCKSLVHIFFAQRG 130 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~--~f~~l~~s~-~~~~~~~aF~~kr~ 130 (560)
.++..+|++++.....+++++++.|.. .+..++.++ |+++++.+|++||.
T Consensus 212 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~d~~eg~~afl~kr~ 264 (275)
T PRK09120 212 VVLRAAKDGFKRVRELTWDQAEDYLYAKLEQANSLDPEGGREEGLKQFLDDKS 264 (275)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhccc
Confidence 378889999999888889999888764 455678898 89999999999987
No 130
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.12 E-value=5.8e-09 Score=119.43 Aligned_cols=156 Identities=19% Similarity=0.229 Sum_probs=116.3
Q ss_pred ceEEEEEcCccchHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 008604 147 VKKVAILGGGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (560)
Q Consensus 147 ~~~V~VIG~G~mG~~iA~~l~~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (560)
+++|+|||+|.||.+++..+.++| ++|++||+++++++.+. +.|... ...++. +.
T Consensus 3 ~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~-----------~~g~~~-----------~~~~~~~~~ 60 (735)
T PRK14806 3 FGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAV-----------SLGVID-----------RGEEDLAEA 60 (735)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHH-----------HCCCCC-----------cccCCHHHH
Confidence 578999999999999999999999 48999999988765432 223210 112233 34
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcc--cHHHHHhhcc-CCCcEeecccCCCCC----------
Q 008604 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTY-SKDRIVGAHFFSPAH---------- 290 (560)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl--~i~~la~~~~-~~~r~~g~hf~~P~~---------- 290 (560)
+.+||+||.|+|. .....+++++.++++++++|.+.+|+- .+..+.+.+. .+.|+++.|++....
T Consensus 61 ~~~aDvVilavp~--~~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~ 138 (735)
T PRK14806 61 VSGADVIVLAVPV--LAMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANAD 138 (735)
T ss_pred hcCCCEEEECCCH--HHHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhH
Confidence 7899999999995 467888889988888888775444322 2556655543 367899999975221
Q ss_pred --CCCeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEec
Q 008604 291 --VMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (560)
Q Consensus 291 --~~~lvEiv~g~~t~~e~~~~~~~l~~~lGk~~i~v~ 326 (560)
....+.++++..++++..+.+..+++.+|..++.+.
T Consensus 139 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~~~ 176 (735)
T PRK14806 139 LFRNHKVILTPLAETDPAALARVDRLWRAVGADVLHMD 176 (735)
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 234567888888999999999999999999888885
No 131
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.11 E-value=2e-09 Score=109.39 Aligned_cols=150 Identities=17% Similarity=0.089 Sum_probs=107.3
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (560)
++|+|||.|.||.++|..|..+|++|++++++.++..... .+.|. ...+..+.++.|
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A----------~~~G~-------------~~~s~~eaa~~A 74 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKA----------EADGF-------------EVLTVAEAAKWA 74 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHH----------HHCCC-------------eeCCHHHHHhcC
Confidence 6899999999999999999999999999988754332111 11221 112222567899
Q ss_pred CEEEEeccCChHHHHHHH-HHHHhhcCCCceeeccCCcccHHHHHhhccCCCcEeecccCCCCC-------CCCeE-EEE
Q 008604 228 DMVIEAIIENVSLKQQIF-ADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH-------VMPLL-EIV 298 (560)
Q Consensus 228 DlVIeav~e~~~~k~~~~-~~l~~~~~~~~ii~sntSsl~i~~la~~~~~~~r~~g~hf~~P~~-------~~~lv-Eiv 298 (560)
|+||.++|.... ..++ .++.+.++++++| +-.+++++.......+...+++-+.+-.|.+ .+.-+ -++
T Consensus 75 DVVvLaVPd~~~--~~V~~~~I~~~Lk~g~iL-~~a~G~~i~~~~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~ 151 (330)
T PRK05479 75 DVIMILLPDEVQ--AEVYEEEIEPNLKEGAAL-AFAHGFNIHFGQIVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCLI 151 (330)
T ss_pred CEEEEcCCHHHH--HHHHHHHHHhcCCCCCEE-EECCCCChhhceeccCCCCcEEEeCCCCCchhhhhhhhcCCCceEEE
Confidence 999999996543 6666 7798899999988 7788888887655444445677777766766 22111 123
Q ss_pred -eCCCCcHHHHHHHHHHHHhcCCceE
Q 008604 299 -RTNQTSPQVIVDLLDIGKKIKKTPI 323 (560)
Q Consensus 299 -~g~~t~~e~~~~~~~l~~~lGk~~i 323 (560)
.+...+.+..+.+..++..+|-++.
T Consensus 152 av~~d~t~~a~~~a~~l~~aiG~~~~ 177 (330)
T PRK05479 152 AVHQDASGNAKDLALAYAKGIGGTRA 177 (330)
T ss_pred EecCCCCHHHHHHHHHHHHHcCCCcc
Confidence 3455668889999999999998875
No 132
>PLN02921 naphthoate synthase
Probab=99.11 E-value=1.8e-10 Score=118.01 Aligned_cols=96 Identities=20% Similarity=0.216 Sum_probs=80.7
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|+|+|++++|+||+++||||+|||++++++++.++|++|+..+ |
T Consensus 225 llltG~~~~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~-p----------------------------------- 268 (327)
T PLN02921 225 MWFLARFYTASEALKMGLVNTVVPLDELEGETVKWCREILRNS-P----------------------------------- 268 (327)
T ss_pred HHHcCCcCCHHHHHHCCCceEEeCHHHHHHHHHHHHHHHHccC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999852 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhccCCCC
Q 008604 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~~ 133 (560)
.++..+|++++..... .......|...+..++.|+|+++++.+|++||++..
T Consensus 269 ~al~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d~~egi~Af~ekr~p~f 320 (327)
T PLN02921 269 TAIRVLKSALNAADDG-HAGLQELGGNATLLFYGSEEGNEGRTAYLEGRAPDF 320 (327)
T ss_pred HHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCC
Confidence 3777889988876543 333344455888899999999999999999998765
No 133
>PRK07680 late competence protein ComER; Validated
Probab=99.10 E-value=4.6e-09 Score=105.59 Aligned_cols=151 Identities=13% Similarity=0.058 Sum_probs=105.5
Q ss_pred EEEEEcCccchHHHHHHHHhCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 008604 149 KVAILGGGLMGSGIATALILSNY----PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (560)
Q Consensus 149 ~V~VIG~G~mG~~iA~~l~~~G~----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (560)
+|+|||+|.||..|+..|.++|+ +|+++|++++..+...++ . ..+..+.+. +.
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~----------~------------~g~~~~~~~~~~ 59 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKER----------Y------------PGIHVAKTIEEV 59 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHH----------c------------CCeEEECCHHHH
Confidence 69999999999999999999994 799999998876443210 0 012223333 44
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccHHHHHhhccCCCcEeecccCCCCCC-CCeEEEEeCCC
Q 008604 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHV-MPLLEIVRTNQ 302 (560)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~~la~~~~~~~r~~g~hf~~P~~~-~~lvEiv~g~~ 302 (560)
+.+||+||.|++ ...-.++++++.+++.++++|++.++++++..+...++ .+++-.++..|... ....-++.++.
T Consensus 60 ~~~aDiVilav~--p~~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~~~~--~~~~r~~p~~~~~~~~G~t~~~~g~~ 135 (273)
T PRK07680 60 ISQSDLIFICVK--PLDIYPLLQKLAPHLTDEHCLVSITSPISVEQLETLVP--CQVARIIPSITNRALSGASLFTFGSR 135 (273)
T ss_pred HHhCCEEEEecC--HHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcC--CCEEEECCChHHHHhhccEEEeeCCC
Confidence 789999999997 33456777888888888888888888899888887664 23344444223211 11222345666
Q ss_pred CcHHHHHHHHHHHHhcCCceEEec
Q 008604 303 TSPQVIVDLLDIGKKIKKTPIVVG 326 (560)
Q Consensus 303 t~~e~~~~~~~l~~~lGk~~i~v~ 326 (560)
.+++..+.+.+++..+|. ++.+.
T Consensus 136 ~~~~~~~~~~~ll~~~G~-~~~i~ 158 (273)
T PRK07680 136 CSEEDQQKLERLFSNIST-PLVIE 158 (273)
T ss_pred CCHHHHHHHHHHHHcCCC-EEEEC
Confidence 788888999999999995 55554
No 134
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=99.09 E-value=2.1e-10 Score=114.01 Aligned_cols=96 Identities=19% Similarity=0.261 Sum_probs=78.4
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|++||++++|+||+++||||+|||++++++++.++|++++..+ |
T Consensus 158 lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~-~----------------------------------- 201 (256)
T TIGR03210 158 IWYLCRRYTAQEALAMGLVNAVVPHDQLDAEVQKWCDEIVEKS-P----------------------------------- 201 (256)
T ss_pred HHHhCCCcCHHHHHHcCCceeeeCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999852 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhccCCCC
Q 008604 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~~ 133 (560)
.++..+|++++.....+... ...|...+..++.|+++++++.+|++||++..
T Consensus 202 ~a~~~~K~~l~~~~~~~~~~-~~~~~~~~~~~~~~~d~~e~~~af~~kr~p~~ 253 (256)
T TIGR03210 202 TAIAIAKRSFNMDTAHQRGI-AGMGMYALKLYYDTAESREGVKAFQEKRKPEF 253 (256)
T ss_pred HHHHHHHHHHHHhhcccchH-HHHHHHHHHHHccChhHHHHHHHHhccCCCCC
Confidence 37778888888764432111 12356788889999999999999999987654
No 135
>PRK08321 naphthoate synthase; Validated
Probab=99.08 E-value=2.5e-10 Score=116.17 Aligned_cols=96 Identities=20% Similarity=0.217 Sum_probs=82.3
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|+|||++++|+||+++||||+|||++++++++.++|++++..+ |
T Consensus 200 l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 243 (302)
T PRK08321 200 IFFLGRTYSAEEAHDMGAVNAVVPHAELETEALEWAREINGKS-P----------------------------------- 243 (302)
T ss_pred HHHcCCccCHHHHHHCCCceEeeCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5799999999999999999999999999999999999999852 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhccCCCC
Q 008604 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~~ 133 (560)
.++..+|++++..... ..+....|.+.+..++.++++++++.+|++||++..
T Consensus 244 ~a~~~~K~~l~~~~~~-~~~~~~~e~~~~~~~~~~~d~~egi~af~ekr~p~~ 295 (302)
T PRK08321 244 TAMRMLKYAFNLTDDG-LVGQQLFAGEATRLAYMTDEAQEGRDAFLEKRDPDW 295 (302)
T ss_pred HHHHHHHHHHHhhhcc-cHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCC
Confidence 3777888988776543 444455689999999999999999999999987654
No 136
>PTZ00117 malate dehydrogenase; Provisional
Probab=99.07 E-value=2.2e-10 Score=117.32 Aligned_cols=125 Identities=23% Similarity=0.391 Sum_probs=93.3
Q ss_pred eEEEEEcCccchHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 008604 148 KKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (560)
+||+|||+|.||.++|..++..| .+|+++|++++.++ +.. ++.... ........+++.+++++++++
T Consensus 6 ~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~-g~~-----lDl~~~------~~~~~~~~~i~~~~d~~~l~~ 73 (319)
T PTZ00117 6 KKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQ-GKA-----LDLKHF------STLVGSNINILGTNNYEDIKD 73 (319)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccch-hHH-----HHHhhh------ccccCCCeEEEeCCCHHHhCC
Confidence 58999999999999999999999 69999999987654 221 111000 000111135565678899999
Q ss_pred CCEEEEec--cCCh------------HHHHHHHHHHHhhcCCC-ceeeccCCcccHHHHHhhccCC-CcEeecc
Q 008604 227 VDMVIEAI--IENV------------SLKQQIFADLEKYCPPH-CILASNTSTIDLNLIGERTYSK-DRIVGAH 284 (560)
Q Consensus 227 aDlVIeav--~e~~------------~~k~~~~~~l~~~~~~~-~ii~sntSsl~i~~la~~~~~~-~r~~g~h 284 (560)
||+||+++ +++. .+++++.+.+.+++++. .|++||.+.+....+......| .|++|++
T Consensus 74 ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~g 147 (319)
T PTZ00117 74 SDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMA 147 (319)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEec
Confidence 99999999 6666 78999999999999877 5677898877777776666555 8888875
No 137
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=99.07 E-value=3.4e-10 Score=112.99 Aligned_cols=93 Identities=24% Similarity=0.253 Sum_probs=78.8
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|+|+|++++|+||+++||||+|||++++++.+.++|++++..+ |
T Consensus 167 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~-~----------------------------------- 210 (262)
T PRK06144 167 MLFTARLLEAEEALAAGLVNEVVEDAALDARADALAELLAAHA-P----------------------------------- 210 (262)
T ss_pred HHHcCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999852 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhccCCCC
Q 008604 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~~ 133 (560)
.+...+|+.++..... .++.+.+.+..++.++++++++.+|++||++..
T Consensus 211 ~a~~~~K~~l~~~~~~----~l~~~~~~~~~~~~~~~~~e~~~af~~kr~p~~ 259 (262)
T PRK06144 211 LTLRATKEALRRLRRE----GLPDGDDLIRMCYMSEDFREGVEAFLEKRPPKW 259 (262)
T ss_pred HHHHHHHHHHHHhhhc----CHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCC
Confidence 3677788888776543 345566788899999999999999999987653
No 138
>PRK06223 malate dehydrogenase; Reviewed
Probab=99.06 E-value=4.4e-10 Score=115.00 Aligned_cols=125 Identities=23% Similarity=0.335 Sum_probs=86.1
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 008604 147 VKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (560)
Q Consensus 147 ~~~V~VIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (560)
|+||+|||+|.||.++|..++..|+ +|+++|++++.++.....+... . .......+++.++++++++
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~---~---------~~~~~~~~i~~~~d~~~~~ 69 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEA---A---------PVEGFDTKITGTNDYEDIA 69 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhh---h---------hhcCCCcEEEeCCCHHHHC
Confidence 5799999999999999999999876 9999999988754221111110 0 0111123566667888899
Q ss_pred CCCEEEEec--------------cCChHHHHHHHHHHHhhcCCCc-eeeccCCcccHHHHHhhccC-CCcEeec
Q 008604 226 DVDMVIEAI--------------IENVSLKQQIFADLEKYCPPHC-ILASNTSTIDLNLIGERTYS-KDRIVGA 283 (560)
Q Consensus 226 ~aDlVIeav--------------~e~~~~k~~~~~~l~~~~~~~~-ii~sntSsl~i~~la~~~~~-~~r~~g~ 283 (560)
+||+||.++ .++..+++++++++.+.+++.. |++||.+.+-...+...... |.|++|+
T Consensus 70 ~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~ 143 (307)
T PRK06223 70 GSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGM 143 (307)
T ss_pred CCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEe
Confidence 999999886 4677899999999999987663 44566655443333333222 3566665
No 139
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.05 E-value=9.8e-09 Score=102.36 Aligned_cols=181 Identities=13% Similarity=0.074 Sum_probs=117.3
Q ss_pred EEEEEcCccchHHHHHHHHhCCCc---EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccc
Q 008604 149 KVAILGGGLMGSGIATALILSNYP---VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (560)
Q Consensus 149 ~V~VIG~G~mG~~iA~~l~~~G~~---V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 224 (560)
+|+|||+|.||.+|+..+.++|++ |.++|+++++++...+. .+ ....+.+. +.+
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~----------~~------------~~~~~~~~~~~~ 59 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAER----------FP------------KVRIAKDNQAVV 59 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHH----------cC------------CceEeCCHHHHH
Confidence 799999999999999999999865 57899998876543211 00 11222333 346
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccHHHHHhhccCCCcEeecccCCCCCCCCeEEEEeCCCCc
Q 008604 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTS 304 (560)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~~la~~~~~~~r~~g~hf~~P~~~~~lvEiv~g~~t~ 304 (560)
.+||+||.|++. +....++.++. ..++.+|+|..+++++..+...+....+++-.|+..|.....-+..+.+ +
T Consensus 60 ~~aDvVilav~p--~~~~~vl~~l~--~~~~~~vis~~ag~~~~~l~~~~~~~~~~~r~~P~~~~a~~~g~t~~~~---~ 132 (258)
T PRK06476 60 DRSDVVFLAVRP--QIAEEVLRALR--FRPGQTVISVIAATDRAALLEWIGHDVKLVRAIPLPFVAERKGVTAIYP---P 132 (258)
T ss_pred HhCCEEEEEeCH--HHHHHHHHHhc--cCCCCEEEEECCCCCHHHHHHHhCCCCCEEEECCCChhhhCCCCeEecC---C
Confidence 789999999993 34456666652 4577788888889999999888765556677777666543332333322 1
Q ss_pred HHHHHHHHHHHHhcCCceEEecC--cccc-----chhchHHHHHHHHHHHH-HcCCCHHHHHHHHH
Q 008604 305 PQVIVDLLDIGKKIKKTPIVVGN--CTGF-----AVNRMFFPYTQAAFLLV-ERGTDLYLIDRAIT 362 (560)
Q Consensus 305 ~e~~~~~~~l~~~lGk~~i~v~d--~~G~-----i~nri~~~~~~ea~~l~-~~G~~~~dID~a~~ 362 (560)
.+.+.+++..+|..+.+..+ ...+ ....++ .++.++.... ..|+++++...++.
T Consensus 133 ---~~~~~~l~~~lG~~~~~~~e~~~d~~~a~~s~~a~~~-~~~~~~~~~~~~~Gl~~~~a~~~~~ 194 (258)
T PRK06476 133 ---DPFVAALFDALGTAVECDSEEEYDLLAAASALMATYF-GILETATGWLEEQGLKRQKARAYLA 194 (258)
T ss_pred ---HHHHHHHHHhcCCcEEECChHhccceeehhccHHHHH-HHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 25788999999987764322 1111 111111 2445555444 57888888777664
No 140
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.05 E-value=3.3e-09 Score=106.77 Aligned_cols=153 Identities=15% Similarity=0.072 Sum_probs=113.6
Q ss_pred ceEEEEEcCccchHHHHHHHHhCC----CcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 008604 147 VKKVAILGGGLMGSGIATALILSN----YPVILKEVNEKF-LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (560)
Q Consensus 147 ~~~V~VIG~G~mG~~iA~~l~~~G----~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (560)
|++|+|||+|.||.+|+..+.++| ++|++|+++.+. ++... ... ..+..+.+.
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~-----------~~~-----------~~~~~~~~~ 58 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLY-----------DKY-----------PTVELADNE 58 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHH-----------HHc-----------CCeEEeCCH
Confidence 358999999999999999999998 789999987532 22111 000 011223333
Q ss_pred -ccccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccHHHHHhhccCCCcEeecccCCCCCCCCeEEEE-e
Q 008604 222 -ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIV-R 299 (560)
Q Consensus 222 -~~~~~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~~la~~~~~~~r~~g~hf~~P~~~~~lvEiv-~ 299 (560)
+.+.++|+||.|+| ...-.+++.++.+.++++++|+|-+.++++.++.+.++. .+++-+.+.-|+....-+..+ .
T Consensus 59 ~e~~~~aDvVilavp--p~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~~-~~vvR~MPN~~~~~g~g~t~~~~ 135 (277)
T PRK06928 59 AEIFTKCDHSFICVP--PLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPG-LQVSRLIPSLTSAVGVGTSLVAH 135 (277)
T ss_pred HHHHhhCCEEEEecC--HHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCC-CCEEEEeCccHHHHhhhcEEEec
Confidence 35789999999998 444567888888888888888888889999999887753 478888777776655544444 5
Q ss_pred CCCCcHHHHHHHHHHHHhcCCceEE
Q 008604 300 TNQTSPQVIVDLLDIGKKIKKTPIV 324 (560)
Q Consensus 300 g~~t~~e~~~~~~~l~~~lGk~~i~ 324 (560)
++..+++..+.+..++..+|+...+
T Consensus 136 ~~~~~~~~~~~v~~l~~~~G~~~~v 160 (277)
T PRK06928 136 AETVNEANKSRLEETLSHFSHVMTI 160 (277)
T ss_pred CCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 6678899999999999999986644
No 141
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=99.04 E-value=4.6e-10 Score=111.33 Aligned_cols=91 Identities=16% Similarity=0.255 Sum_probs=80.4
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|+++|++++|+||+++||||+|||++++.+++.++|++++..+ |
T Consensus 161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~----------------------------------- 204 (251)
T PRK06023 161 LLALGEGFSAEAAQEAGLIWKIVDEEAVEAETLKAAEELAAKP-P----------------------------------- 204 (251)
T ss_pred HHHhCCCCCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 4789999999999999999999999999999999999998852 1
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhc
Q 008604 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQ 128 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~k 128 (560)
.+...+|++++... .++.+.+..|.+.+..++.|+++++++++|++|
T Consensus 205 ~a~~~~K~~l~~~~-~~l~~~~~~e~~~~~~~~~~~~~~e~~~af~e~ 251 (251)
T PRK06023 205 QALQIARDLMRGPR-EDILARIDEEAKHFAARLKSAEARAAFEAFMRR 251 (251)
T ss_pred HHHHHHHHHHHhch-hhHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcC
Confidence 36777888887654 468888999999999999999999999999874
No 142
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.03 E-value=9.7e-09 Score=104.39 Aligned_cols=202 Identities=18% Similarity=0.262 Sum_probs=129.1
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH----HHHHHHHHHcCCCCHHHHHhhhcccccccCcc-
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV----RANLQSRVKKGKMTQEKFEKTISLLTGVLDYE- 222 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i----~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~- 222 (560)
+||+|||+|..|...+.+|+..||+|+.+|+++++++...+.+ +..++.+++++..+ +|+++|+|++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~--------gRl~fTtd~~~ 72 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLAS--------GRLRFTTDYEE 72 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhcccc--------CcEEEEcCHHH
Confidence 5899999999999999999999999999999999987655432 23455555544322 4689999985
Q ss_pred cccCCCEEEEeccC--------ChHHHHHHHHHHHhhcCCCceeeccCCcccHH---HHHhhcc--CCCcEeecccCCCC
Q 008604 223 SFKDVDMVIEAIIE--------NVSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTY--SKDRIVGAHFFSPA 289 (560)
Q Consensus 223 ~~~~aDlVIeav~e--------~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~---~la~~~~--~~~r~~g~hf~~P~ 289 (560)
+++++|++|.||+. |+.....+.+++.++++..++|+ +-||+|+. .+...+. .+.+-.++- +||-
T Consensus 73 a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV-~KSTVPvGt~~~v~~~i~~~~~~~~f~v~-~NPE 150 (414)
T COG1004 73 AVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVV-IKSTVPVGTTEEVRAKIREENSGKDFEVA-SNPE 150 (414)
T ss_pred HHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEE-EcCCCCCCchHHHHHHHHhhcccCCceEe-cChH
Confidence 68999999999963 45566777788999888866553 77888864 3333221 111100110 2332
Q ss_pred C----------CCCeEEEEeCCCCcHHHHHHHHHHHHhc--CCceEEecCc-cc----cchhchHH---HHHHHHHHHHH
Q 008604 290 H----------VMPLLEIVRTNQTSPQVIVDLLDIGKKI--KKTPIVVGNC-TG----FAVNRMFF---PYTQAAFLLVE 349 (560)
Q Consensus 290 ~----------~~~lvEiv~g~~t~~e~~~~~~~l~~~l--Gk~~i~v~d~-~G----~i~nri~~---~~~~ea~~l~~ 349 (560)
. ..|-- ++-|.. ++.+.+.+..++... ...|+++.+. .. +..|-++. .++||-..+.+
T Consensus 151 FLREG~Av~D~~~PdR-IViG~~-~~~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia~ice 228 (414)
T COG1004 151 FLREGSAVYDFLYPDR-IVIGVR-SERAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKISFINEIANICE 228 (414)
T ss_pred HhcCcchhhhccCCCe-EEEccC-ChhHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 01111 333432 222445555555443 5677776542 22 23454443 46789888876
Q ss_pred -cCCCHHHHHHHH
Q 008604 350 -RGTDLYLIDRAI 361 (560)
Q Consensus 350 -~G~~~~dID~a~ 361 (560)
.|++.++|-.++
T Consensus 229 ~~g~D~~~V~~gI 241 (414)
T COG1004 229 KVGADVKQVAEGI 241 (414)
T ss_pred HhCCCHHHHHHHc
Confidence 588888887766
No 143
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=99.03 E-value=7.2e-10 Score=112.60 Aligned_cols=100 Identities=20% Similarity=0.222 Sum_probs=82.4
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|+|+|++++|+||+++||||+|||+++++++|.++|++++....|
T Consensus 177 llltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~i~~~~~~----------------------------------- 221 (296)
T PRK08260 177 WVYSGRVFDAQEALDGGLVRSVHPPDELLPAARALAREIADNTSP----------------------------------- 221 (296)
T ss_pred HHHcCCccCHHHHHHCCCceeecCHHHHHHHHHHHHHHHHhcCCh-----------------------------------
Confidence 579999999999999999999999999999999999999873112
Q ss_pred CcHHHHHHHHHHhhhCC-hHHHHHHHHHHHhHHhcCHHHHHHHHHHHhccCCCCCC
Q 008604 81 THPIVCIDVVEAGVVSG-PRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVP 135 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~~~-~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~~~~ 135 (560)
.++..+|++++...... ..+....|...+..++.|+++++++.+|++||++...+
T Consensus 222 ~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~f~~ 277 (296)
T PRK08260 222 VSVALTRQMMWRMAGADHPMEAHRVDSRAIYSRGRSGDGKEGVSSFLEKRPAVFPG 277 (296)
T ss_pred HHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHccChhHHHHHHHHhcCCCCCCCC
Confidence 37778899998764321 22344668888999999999999999999999876543
No 144
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.03 E-value=2.3e-08 Score=101.29 Aligned_cols=199 Identities=18% Similarity=0.200 Sum_probs=131.5
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHH---HH-----HHHHHHHHHcCCCCHHHHHhhhccccccc
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIG---RV-----RANLQSRVKKGKMTQEKFEKTISLLTGVL 219 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~---~i-----~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 219 (560)
.+|+|||+|.+|.++|..++++|++|+.+|+|+.+.+.... .| ...+...++. ++++.|+
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~------------g~lraTt 77 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVES------------GKLRATT 77 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhc------------CCceEec
Confidence 79999999999999999999999999999999998765432 11 1112233333 4577899
Q ss_pred CcccccCCCEEEEeccC--------ChHHHHHHHHHHHhhcCCCceeeccCCccc--HHHHHhh-------ccCCCcEee
Q 008604 220 DYESFKDVDMVIEAIIE--------NVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGER-------TYSKDRIVG 282 (560)
Q Consensus 220 ~~~~~~~aDlVIeav~e--------~~~~k~~~~~~l~~~~~~~~ii~sntSsl~--i~~la~~-------~~~~~r~~g 282 (560)
+.+.++.||++|.|||. |+..-....+.+.+++.++.+++.-+++.| .+++..- +..+..|--
T Consensus 78 d~~~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~l 157 (436)
T COG0677 78 DPEELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYL 157 (436)
T ss_pred ChhhcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeE
Confidence 99999999999999974 455666777889999999998765544444 2333322 222222222
Q ss_pred cccCCCCCC---CCeEE------EEeCCCCcHHHHHHHHHHHHhcCCceEEecCc-cc---cchhchH----HHHHHHHH
Q 008604 283 AHFFSPAHV---MPLLE------IVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC-TG---FAVNRMF----FPYTQAAF 345 (560)
Q Consensus 283 ~hf~~P~~~---~~lvE------iv~g~~t~~e~~~~~~~l~~~lGk~~i~v~d~-~G---~i~nri~----~~~~~ea~ 345 (560)
.| +|-.. ..+.| |+.| .+++..+.+..+++.+=+..+.+.+. .. .+..+++ .++.||-.
T Consensus 158 ay--sPERv~PG~~~~el~~~~kVIgG--~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNEla 233 (436)
T COG0677 158 AY--SPERVLPGNVLKELVNNPKVIGG--VTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTENTFRDVNIALANELA 233 (436)
T ss_pred ee--CccccCCCchhhhhhcCCceeec--CCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 21 33221 12333 4555 57889999999999876666666542 22 2233333 36678876
Q ss_pred HHH-HcCCCHHHHHHHHH
Q 008604 346 LLV-ERGTDLYLIDRAIT 362 (560)
Q Consensus 346 ~l~-~~G~~~~dID~a~~ 362 (560)
.+. +.|++..++-++..
T Consensus 234 li~~~~GIdvwevIeaAn 251 (436)
T COG0677 234 LICNAMGIDVWEVIEAAN 251 (436)
T ss_pred HHHHHhCCcHHHHHHHhc
Confidence 665 46888777766664
No 145
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=99.02 E-value=7e-10 Score=110.84 Aligned_cols=94 Identities=22% Similarity=0.234 Sum_probs=83.6
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|+|||++++|+||+++||||+||+ ++.+.+.++|++++..+ +
T Consensus 166 l~ltg~~~~a~eA~~~Glv~~vv~--~~~~~a~~~a~~l~~~~------------------------------------~ 207 (262)
T PRK07509 166 LTYTARVFSAEEALELGLVTHVSD--DPLAAALALAREIAQRS------------------------------------P 207 (262)
T ss_pred HHHcCCCcCHHHHHHcCChhhhhc--hHHHHHHHHHHHHHhCC------------------------------------H
Confidence 578999999999999999999995 37889999999998842 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhccCCC
Q 008604 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~ 132 (560)
.++..+|+.++.....++++++..|.+.+..++.++++++++.+|++||++.
T Consensus 208 ~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p~ 259 (262)
T PRK07509 208 DAIAAAKRLINRSWTASVRALLARESVEQIRLLLGKNQKIAVKAQMKKRAPK 259 (262)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCC
Confidence 3777889999988888899999999999999999999999999999998764
No 146
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=99.02 E-value=8.7e-10 Score=109.14 Aligned_cols=94 Identities=18% Similarity=0.124 Sum_probs=82.3
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|+|||++++|+||+++||||.+ ++++++|.++|++++..+ |
T Consensus 152 lll~g~~~~a~eA~~~Glv~~~---~~~~~~a~~~a~~la~~~-~----------------------------------- 192 (248)
T PRK06072 152 ILVLGGEFTAEEAERWGLLKIS---EDPLSDAEEMANRISNGP-F----------------------------------- 192 (248)
T ss_pred HHHhCCccCHHHHHHCCCcccc---chHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5789999999999999999953 457889999999998842 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhccCCCC
Q 008604 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~~ 133 (560)
.+...+|++++.....++++.++.|.+.+..++.|+++++++.+|++||++..
T Consensus 193 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 245 (248)
T PRK06072 193 QSYIAAKRMINLVLYNDLEEFLEYESAIQGYLGKTEDFKEGISSFKEKREPKF 245 (248)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhCChhHHHHHHHHhcCCCCCC
Confidence 37778899999887788999999999999999999999999999999987654
No 147
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.02 E-value=5.4e-09 Score=102.85 Aligned_cols=150 Identities=19% Similarity=0.197 Sum_probs=118.5
Q ss_pred eEEEEEcCccchHHHHHHHHhCC----CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC-cc
Q 008604 148 KKVAILGGGLMGSGIATALILSN----YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD-YE 222 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G----~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~ 222 (560)
++|+|||+|+||.+|+..|.++| .+|++.|++++.++...++ -| ... +++ .+
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~----------~g------------~~~-~~~~~~ 58 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAE----------YG------------VVT-TTDNQE 58 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHH----------cC------------Ccc-cCcHHH
Confidence 68999999999999999999999 6899999999987632211 11 111 333 35
Q ss_pred cccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccHHHHHhhccCCCcEeecccCCCCCCCCeEEEE-eCC
Q 008604 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIV-RTN 301 (560)
Q Consensus 223 ~~~~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~~la~~~~~~~r~~g~hf~~P~~~~~lvEiv-~g~ 301 (560)
.+.++|+||.||. +..-.+++.++.. ..++.+|+|-..+++++.+...++ ..+++-..+..|+....-+..+ .+.
T Consensus 59 ~~~~advv~LavK--Pq~~~~vl~~l~~-~~~~~lvISiaAGv~~~~l~~~l~-~~~vvR~MPNt~a~vg~g~t~i~~~~ 134 (266)
T COG0345 59 AVEEADVVFLAVK--PQDLEEVLSKLKP-LTKDKLVISIAAGVSIETLERLLG-GLRVVRVMPNTPALVGAGVTAISANA 134 (266)
T ss_pred HHhhCCEEEEEeC--hHhHHHHHHHhhc-ccCCCEEEEEeCCCCHHHHHHHcC-CCceEEeCCChHHHHcCcceeeecCc
Confidence 6788999999996 4566778888877 778999999999999999999887 6788888887777655555544 567
Q ss_pred CCcHHHHHHHHHHHHhcCCceEE
Q 008604 302 QTSPQVIVDLLDIGKKIKKTPIV 324 (560)
Q Consensus 302 ~t~~e~~~~~~~l~~~lGk~~i~ 324 (560)
..+++..+.+..++..+|+...+
T Consensus 135 ~~~~~~~~~v~~l~~~~G~v~~v 157 (266)
T COG0345 135 NVSEEDKAFVEALLSAVGKVVEV 157 (266)
T ss_pred cCCHHHHHHHHHHHHhcCCeEEe
Confidence 88999999999999999976544
No 148
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=99.01 E-value=1.1e-09 Score=108.55 Aligned_cols=95 Identities=16% Similarity=0.274 Sum_probs=79.0
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHH-HHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQW-ALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPN 79 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~-a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (560)
|+|||++++|+||+++||||+|||++ .+.+.++ ++++++.+
T Consensus 152 l~ltg~~~~a~eA~~~Glv~~v~~~~--~~~a~~~~a~~la~~~------------------------------------ 193 (251)
T TIGR03189 152 LLYSGRSIDGAEGARIGLANAVAEDP--ENAALAWFDEHPAKLS------------------------------------ 193 (251)
T ss_pred HHHcCCCCCHHHHHHCCCcceecCcH--HHHHHHHHHHHHHhCC------------------------------------
Confidence 57999999999999999999999754 3566666 57888742
Q ss_pred CCcHHHHHHHHHHhhhCChHHHH-HHHHHHHhHHhcCHHHHHHHHHHHhccCCCC
Q 008604 80 LTHPIVCIDVVEAGVVSGPRAGL-QKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (560)
Q Consensus 80 ~~A~~~~~~~i~~~~~~~~~~~l-~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~~ 133 (560)
+.|+..+|++++.....++++++ ..|.+.+..++.|+|+++++++|++||++..
T Consensus 194 p~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~ 248 (251)
T TIGR03189 194 ASSLRFAVRAARLGMNERVKAKIAEVEALYLEELMATHDAVEGLNAFLEKRPALW 248 (251)
T ss_pred HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhcCCCCC
Confidence 24777889999888777888776 4788889999999999999999999998754
No 149
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=99.01 E-value=4.9e-10 Score=111.02 Aligned_cols=90 Identities=14% Similarity=0.040 Sum_probs=81.5
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|+|||++++|+||+++||||+|| +++++++.++|++++..+ |
T Consensus 159 l~ltg~~~~a~eA~~~Glv~~vv--~~l~~~a~~~a~~la~~~-~----------------------------------- 200 (249)
T PRK05870 159 ALLFGMRFDAEAAVRHGLALMVA--DDPVAAALELAAGPAAAP-R----------------------------------- 200 (249)
T ss_pred HHHhCCccCHHHHHHcCCHHHHH--hhHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 57899999999999999999999 679999999999999852 2
Q ss_pred CcHHHHHHHHHHhhh-CChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhc
Q 008604 81 THPIVCIDVVEAGVV-SGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQ 128 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~-~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~k 128 (560)
.+...+|+.++.... .+++++++.|.+.+..++.|+|+++++++|+++
T Consensus 201 ~a~~~~K~~~~~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~~ 249 (249)
T PRK05870 201 ELVLATKASMRATASLAQHAAAVEFELGPQAASVQSPEFAARLAAAQRR 249 (249)
T ss_pred HHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcC
Confidence 478889999998877 789999999999999999999999999999874
No 150
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=99.01 E-value=4.3e-10 Score=111.26 Aligned_cols=92 Identities=25% Similarity=0.370 Sum_probs=84.6
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|+|+|++++|++|+++||||+|+|++++.+.+.+++++++..+ |
T Consensus 154 l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~-~----------------------------------- 197 (245)
T PF00378_consen 154 LLLTGEPISAEEALELGLVDEVVPDEELDEEALELAKRLAAKP-P----------------------------------- 197 (245)
T ss_dssp HHHHTCEEEHHHHHHTTSSSEEESGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred cccccccchhHHHHhhcceeEEcCchhhhHHHHHHHHHHhcCC-H-----------------------------------
Confidence 4689999999999999999999999999999999999999952 1
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhc
Q 008604 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQ 128 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~k 128 (560)
.+...+|+.++.....+..+.+..|.+.+..++.++++++++++|++|
T Consensus 198 ~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~f~eK 245 (245)
T PF00378_consen 198 SALRATKKALNRALEQSLEEALEFEQDLFAECFKSEDFQEGIAAFLEK 245 (245)
T ss_dssp HHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCc
Confidence 377788999999888889999999999999999999999999999986
No 151
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.01 E-value=4.3e-09 Score=108.76 Aligned_cols=161 Identities=17% Similarity=0.155 Sum_probs=96.8
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 008604 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (560)
Q Consensus 147 ~~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (560)
.++|+|||+|.||.+||..|+++|++|++|+++++..+..... ...+..-+. .....++..+++. +.+.
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~--------~~~~~~~~g--~~~~~~~~~~~~~~e~~~ 73 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAE--------RENREYLPG--VALPAELYPTADPEEALA 73 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHh--------CcccccCCC--CcCCCCeEEeCCHHHHHc
Confidence 3589999999999999999999999999999998876543311 000000000 0011123344555 4578
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCccc-----HHHHHhhccC--CCcEeecccC-CCCC------C
Q 008604 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID-----LNLIGERTYS--KDRIVGAHFF-SPAH------V 291 (560)
Q Consensus 226 ~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~-----i~~la~~~~~--~~r~~g~hf~-~P~~------~ 291 (560)
+||+||.|++... + .++.+.+++++++++.+.++. ...+++.+.. ..++ .+. .|.. .
T Consensus 74 ~aD~Vi~~v~~~~-~-----~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~---~~~~gP~~a~~~~~~ 144 (328)
T PRK14618 74 GADFAVVAVPSKA-L-----RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARV---AVLSGPNHAEEIARF 144 (328)
T ss_pred CCCEEEEECchHH-H-----HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCe---EEEECccHHHHHHcC
Confidence 9999999999762 2 333345667777766555444 3344444321 0111 111 2221 1
Q ss_pred CCeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEecCc
Q 008604 292 MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC 328 (560)
Q Consensus 292 ~~lvEiv~g~~t~~e~~~~~~~l~~~lGk~~i~v~d~ 328 (560)
.+.+.++.+ .+++.++.+++++...|..+....|.
T Consensus 145 ~~~~~~~~~--~~~~~~~~v~~ll~~~~~~v~~~~di 179 (328)
T PRK14618 145 LPAATVVAS--PEPGLARRVQAAFSGPSFRVYTSRDR 179 (328)
T ss_pred CCeEEEEEe--CCHHHHHHHHHHhCCCcEEEEecCCc
Confidence 123334444 37888999999999999777654443
No 152
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=98.99 E-value=1e-09 Score=109.89 Aligned_cols=93 Identities=19% Similarity=0.158 Sum_probs=75.2
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|+|||++++|+||+++||||+|||+++++++|.++|+++++.+ |
T Consensus 170 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 213 (268)
T PRK07327 170 YLLLCEPVSGEEAERIGLVSLAVDDDELLPKALEVAERLAAGS-Q----------------------------------- 213 (268)
T ss_pred HHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999999852 2
Q ss_pred CcHHHHHHHHHHhhh---CChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhccCCCC
Q 008604 81 THPIVCIDVVEAGVV---SGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~---~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~~ 133 (560)
.++..+|++++.... .+++..+..| ..++.|+++++++.+|++||++..
T Consensus 214 ~a~~~~K~~l~~~~~~~~~~~~~~~~~~----~~~~~~~d~~eg~~af~ekr~p~~ 265 (268)
T PRK07327 214 TAIRWTKYALNNWLRMAGPTFDTSLALE----FMGFSGPDVREGLASLREKRAPDF 265 (268)
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHH----HHHccChhHHHHHHHHHhcCCCCC
Confidence 366778888876432 2345555444 246789999999999999987754
No 153
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=98.98 E-value=6.4e-09 Score=105.85 Aligned_cols=202 Identities=14% Similarity=0.077 Sum_probs=131.4
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVN-EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~-~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (560)
++|+|||+|.||.++|..|..+|++|+++++. .+..+.+. +.| +..++..+.+++
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~-----------~~G-------------v~~~s~~ea~~~ 59 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKAT-----------EDG-------------FKVGTVEEAIPQ 59 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHH-----------HCC-------------CEECCHHHHHhc
Confidence 57999999999999999999999998876654 33333221 122 112222355789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccHHHHHhhccCCCcEeecccCCCCCC-------CCeE-EEE
Q 008604 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHV-------MPLL-EIV 298 (560)
Q Consensus 227 aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~~la~~~~~~~r~~g~hf~~P~~~-------~~lv-Eiv 298 (560)
||+||.++|+... ...+.+++.+.++++. ++|-..++++..+...++...+++-+.|-.|.+. +.-+ -++
T Consensus 60 ADiVvLaVpp~~~-~~~v~~ei~~~l~~g~-iVs~aaG~~i~~~~~~~~~~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~ 137 (314)
T TIGR00465 60 ADLIMNLLPDEVQ-HEVYEAEIQPLLKEGK-TLGFSHGFNIHFVQIVPPKDVDVVMVAPKGPGTLVREEYKEGFGVPTLI 137 (314)
T ss_pred CCEEEEeCCcHhH-HHHHHHHHHhhCCCCc-EEEEeCCccHhhccccCCCCCcEEEECCCCCcHHHHHHhhcCCCeeEEE
Confidence 9999999996533 4566677888888887 4577788999888766655557887888778763 3333 343
Q ss_pred -eCCCCcHHHHHHHHHHHHhcCCc-------eE--Eec-Ccccc--chhchHHHHH---HHHHHHHHcCCCHHHHHHHHH
Q 008604 299 -RTNQTSPQVIVDLLDIGKKIKKT-------PI--VVG-NCTGF--AVNRMFFPYT---QAAFLLVERGTDLYLIDRAIT 362 (560)
Q Consensus 299 -~g~~t~~e~~~~~~~l~~~lGk~-------~i--~v~-d~~G~--i~nri~~~~~---~ea~~l~~~G~~~~dID~a~~ 362 (560)
.+...+.+..+.+..++..+|.. .. .+. |--+. ...-...+++ .|++ ++.|++++.--....
T Consensus 138 a~~~~~~~~~~~~~~~~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa~v~~~~eal--v~~G~~~e~A~~~~~ 215 (314)
T TIGR00465 138 AVEQDPTGEAMAIALAYAKAIGGGRAGVLETTFKEETESDLFGEQAVLCGGLTALIKAGFDTL--VEAGYQPELAYFETV 215 (314)
T ss_pred EecCCCCHHHHHHHHHHHHHcCCCccceeechhHhhhhHHhcCcchhHHhHHHHHHHHHHHHH--HHcCCCHHHHHHHHH
Confidence 66677888999999999999988 21 221 11111 1122222332 2333 678887776655543
Q ss_pred -hcCCCccHHHHHHHhhhH
Q 008604 363 -KFGMPMGPFRLADLVGFG 380 (560)
Q Consensus 363 -~~G~~~GPf~~~D~~Gld 380 (560)
.+ .|--+++-..|+.
T Consensus 216 ~~~---~g~~~l~~e~g~~ 231 (314)
T TIGR00465 216 HEL---KLIVDLIYEGGIT 231 (314)
T ss_pred HHH---HHHHHHHHHhcHH
Confidence 22 4666666666663
No 154
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.97 E-value=1.1e-08 Score=104.76 Aligned_cols=139 Identities=18% Similarity=0.215 Sum_probs=92.1
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (560)
++|+|||+|.||.+||..|+.+|++|++||++... ++ +.+.+
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~~-------------------------------------~~~~~~~~ 47 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRSGL-------------------------------------SLAAVLAD 47 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCCC-------------------------------------CHHHHHhc
Confidence 57999999999999999999999999999998530 11 33568
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhh-cCCCceeeccCCcccHH------HHHh-hccCCCcEeecccCCCCC------CC
Q 008604 227 VDMVIEAIIENVSLKQQIFADLEKY-CPPHCILASNTSTIDLN------LIGE-RTYSKDRIVGAHFFSPAH------VM 292 (560)
Q Consensus 227 aDlVIeav~e~~~~k~~~~~~l~~~-~~~~~ii~sntSsl~i~------~la~-~~~~~~r~~g~hf~~P~~------~~ 292 (560)
+|+||.++|.+ ..+.++.++..+ +++++++++.+.++.+. ++.. ... ..+++. +..|.. ..
T Consensus 48 advvi~~vp~~--~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~-~~~v~~--i~gp~~a~ei~~~~ 122 (308)
T PRK14619 48 ADVIVSAVSMK--GVRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQAAFP-NHPVVV--LSGPNLSKEIQQGL 122 (308)
T ss_pred CCEEEEECChH--HHHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcC-CCceEE--EECCCcHHHHhcCC
Confidence 99999999963 566777888764 67888887766544432 2221 111 112210 112211 11
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEecCccc
Q 008604 293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG 330 (560)
Q Consensus 293 ~lvEiv~g~~t~~e~~~~~~~l~~~lGk~~i~v~d~~G 330 (560)
+..-++.+ .+.+..+.+++++...+..++..+|..|
T Consensus 123 ~~~~~~ag--~~~~~~~~v~~ll~~~~~~~~~~~d~~G 158 (308)
T PRK14619 123 PAATVVAS--RDLAAAETVQQIFSSERFRVYTNSDPLG 158 (308)
T ss_pred CeEEEEEe--CCHHHHHHHHHHhCCCcEEEEecCCchh
Confidence 22223333 2688899999999999888876666434
No 155
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=98.97 E-value=2.6e-08 Score=96.82 Aligned_cols=163 Identities=18% Similarity=0.159 Sum_probs=103.3
Q ss_pred eEEEEEc-CccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 008604 148 KKVAILG-GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (560)
Q Consensus 148 ~~V~VIG-~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (560)
++|+||| +|.||..++..|+++|++|+++++++++++........ .....|. . ..+..+++.+.+.+
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~---~~~~~g~-~--------~~~~~~~~~ea~~~ 68 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALE---ELGHGGS-D--------IKVTGADNAEAAKR 68 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHh---hccccCC-C--------ceEEEeChHHHHhc
Confidence 4799997 89999999999999999999999999887654322110 0000110 0 01122233466889
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccH-----------------HHHHhhccCCCcEeecccCCCC
Q 008604 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL-----------------NLIGERTYSKDRIVGAHFFSPA 289 (560)
Q Consensus 227 aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i-----------------~~la~~~~~~~r~~g~hf~~P~ 289 (560)
+|+||.|+|. ..-..+++++...+.. ++|++.+-+++. +.+++.++...+++..-...|.
T Consensus 69 aDvVilavp~--~~~~~~l~~l~~~l~~-~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~VVka~~~~~a 145 (219)
T TIGR01915 69 ADVVILAVPW--DHVLKTLESLRDELSG-KLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPETSRVVAAFHNLSA 145 (219)
T ss_pred CCEEEEECCH--HHHHHHHHHHHHhccC-CEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCCCeEeeccccCCH
Confidence 9999999983 3345666677665554 666666555554 3355555433677765322121
Q ss_pred -------CCCCeEEEEeCCCCcHHHHHHHHHHHHhc-CCceEEecC
Q 008604 290 -------HVMPLLEIVRTNQTSPQVIVDLLDIGKKI-KKTPIVVGN 327 (560)
Q Consensus 290 -------~~~~lvEiv~g~~t~~e~~~~~~~l~~~l-Gk~~i~v~d 327 (560)
...+..-.+.|+ +++..+.+..+.+.+ |..|+.++.
T Consensus 146 ~~~~~~~~~~~~~~~v~Gd--d~~ak~~v~~L~~~~~G~~~vd~G~ 189 (219)
T TIGR01915 146 VLLQDVDDEVDCDVLVCGD--DEEAKEVVAELAGRIDGLRALDAGP 189 (219)
T ss_pred HHhcCCCCCCCCCEEEECC--CHHHHHHHHHHHHhcCCCCcccCCc
Confidence 111222345664 566888899999999 999988763
No 156
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=98.97 E-value=1.4e-09 Score=108.09 Aligned_cols=94 Identities=16% Similarity=0.073 Sum_probs=79.3
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|+|+|++++|+||+++||||+|||+++. .+.+++++++..+ +
T Consensus 159 l~l~g~~~~a~eA~~~Glv~~vv~~~~~--~~~~~a~~l~~~~------------------------------------p 200 (255)
T PRK07112 159 MTLMTQPVTAQQAFSWGLVDAYGANSDT--LLRKHLLRLRCLN------------------------------------K 200 (255)
T ss_pred HHHhCCcccHHHHHHcCCCceecCcHHH--HHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999987653 5777888888742 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhccCCCC
Q 008604 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~~ 133 (560)
.+...+|++++.. ..++.++++.|.+.+..++.|+|+++++.+|++||++..
T Consensus 201 ~a~~~~K~~~~~~-~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~ 252 (255)
T PRK07112 201 AAVARYKSYASTL-DDTVAAARPAALAANIEMFADPENLRKIARYVETGKFPW 252 (255)
T ss_pred HHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHcChHHHHHHHHHHcCCCCCC
Confidence 4777888888765 446888999999999999999999999999999987643
No 157
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=98.96 E-value=8.2e-10 Score=114.13 Aligned_cols=132 Identities=17% Similarity=0.148 Sum_probs=85.0
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHH------------hhhccCCCchhh------hcccCCCCCchhH
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWAL------------DILEHRRPWVAT------LYKTDKIEPLGEA 62 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~------------~la~~~~p~~~~------~~~~~~~~~~~~~ 62 (560)
|+|||++++|++|+++||||+|||++++.+...++++ .+.....+.... ....+-++.. ..
T Consensus 163 llltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~ 241 (342)
T PRK05617 163 LALTGARISAADALYAGLADHFVPSADLPALLDALISLRWDSGADVVDAALAAFATPAPASELAAQRAWIDECFAGD-TV 241 (342)
T ss_pred HHHcCCCCCHHHHHHcCCcceecCHHHHHHHHHHHHhcCCccchhHHHHHHHHhccCCCcchhHHHHHHHHHHhCCC-CH
Confidence 5799999999999999999999999888766333221 011100000000 0000000000 00
Q ss_pred HHHHH--------HHHHHHHHh-CCCCCcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhcCHHHHHHHHHHH-hc-cCC
Q 008604 63 REIFK--------FARAQARKQ-APNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFF-AQ-RGT 131 (560)
Q Consensus 63 ~~~~~--------~~~~~~~~~-~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~-~k-r~~ 131 (560)
..++. .+.+.+++- .+++.++..+|++++.+...+++++++.|...+..++.|+|+++++++|+ +| |++
T Consensus 242 ~~~~~~l~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~egv~afl~ek~r~p 321 (342)
T PRK05617 242 EDIIAALEADGGEFAAKTADTLRSRSPTSLKVTLEQLRRARGLTLEECLRRELRLALAMLRSPDFVEGVRAVLIDKDRNP 321 (342)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCchhhccceEEEcCCCCC
Confidence 01111 122333332 34677999999999998888999999999999999999999999999997 66 555
Q ss_pred CC
Q 008604 132 SK 133 (560)
Q Consensus 132 ~~ 133 (560)
+.
T Consensus 322 ~~ 323 (342)
T PRK05617 322 KW 323 (342)
T ss_pred CC
Confidence 43
No 158
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=98.96 E-value=1.7e-09 Score=107.90 Aligned_cols=94 Identities=18% Similarity=0.220 Sum_probs=83.9
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|+++|++++|+||+++||||++++ ++.+.+.++|++++..+ +
T Consensus 164 l~l~g~~~~a~eA~~~Glv~~v~~--~l~~~a~~~a~~la~~~------------------------------------~ 205 (260)
T PRK07827 164 YYLTGEKFGAAEAARIGLVTAAAD--DVDAAVAALLADLRRGS------------------------------------P 205 (260)
T ss_pred HHHhCCccCHHHHHHcCCcccchH--HHHHHHHHHHHHHHhCC------------------------------------H
Confidence 578999999999999999999974 58999999999999842 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhccCCC
Q 008604 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~ 132 (560)
.+...+|++++.....++++.++.|...+..++.++++++++.+|++||+++
T Consensus 206 ~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~kr~p~ 257 (260)
T PRK07827 206 QGLAESKALTTAAVLAGFDRDAEELTEESARLFVSDEAREGMTAFLQKRPPR 257 (260)
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCC
Confidence 4778899999998888899999999999999999999999999999998654
No 159
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.96 E-value=3.5e-08 Score=97.54 Aligned_cols=152 Identities=15% Similarity=0.196 Sum_probs=108.3
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCC---c-EEEEeC-CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 008604 147 VKKVAILGGGLMGSGIATALILSNY---P-VILKEV-NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (560)
Q Consensus 147 ~~~V~VIG~G~mG~~iA~~l~~~G~---~-V~l~d~-~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (560)
..||+|||+|.||.+++..++++|. + |+++++ ++++++..... .+ +..+.+.
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~----------~~-------------~~~~~~~ 60 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQAR----------YN-------------VSTTTDW 60 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHH----------cC-------------cEEeCCh
Confidence 3589999999999999999998873 3 777887 45655432211 01 1223344
Q ss_pred -ccccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccHHHHHhhccCCCcEeecccCCCCCCCCeEE-EEe
Q 008604 222 -ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLE-IVR 299 (560)
Q Consensus 222 -~~~~~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~~la~~~~~~~r~~g~hf~~P~~~~~lvE-iv~ 299 (560)
+.+.++|+||.|+|.. .-.++++++.++.+ +.+|+|.+.+++++.+...++...+++-.|+..|.....-+. ++.
T Consensus 61 ~~~~~~~DiViiavp~~--~~~~v~~~l~~~~~-~~~vis~~~gi~~~~l~~~~~~~~~v~r~~Pn~a~~v~~g~~~~~~ 137 (245)
T PRK07634 61 KQHVTSVDTIVLAMPPS--AHEELLAELSPLLS-NQLVVTVAAGIGPSYLEERLPKGTPVAWIMPNTAAEIGKSISLYTM 137 (245)
T ss_pred HHHHhcCCEEEEecCHH--HHHHHHHHHHhhcc-CCEEEEECCCCCHHHHHHHcCCCCeEEEECCcHHHHHhcCCeEEee
Confidence 3468899999999954 44677788877665 567888899999999988876555677788765544322222 234
Q ss_pred CCCCcHHHHHHHHHHHHhcCCceEE
Q 008604 300 TNQTSPQVIVDLLDIGKKIKKTPIV 324 (560)
Q Consensus 300 g~~t~~e~~~~~~~l~~~lGk~~i~ 324 (560)
+...+++..+.+..++..+|..+.+
T Consensus 138 ~~~~~~~~~~~v~~lf~~~G~~~~~ 162 (245)
T PRK07634 138 GQSVNETHKETLQLILKGIGTSQLC 162 (245)
T ss_pred CCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 5567889999999999999988864
No 160
>PLN02712 arogenate dehydrogenase
Probab=98.96 E-value=8.4e-09 Score=115.24 Aligned_cols=154 Identities=13% Similarity=0.100 Sum_probs=106.8
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-c
Q 008604 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F 224 (560)
Q Consensus 146 ~~~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 224 (560)
..++|+|||+|.||.++|..+.+.|++|++||++.+. +.+ .+.|. ...++++. +
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a-----------~~~Gv-------------~~~~~~~el~ 422 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEA-----------QKLGV-------------SYFSDADDLC 422 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHH-----------HHcCC-------------eEeCCHHHHH
Confidence 3468999999999999999999999999999998542 211 11221 12234433 3
Q ss_pred c-CCCEEEEeccCChHHHHHHHHHHHh-hcCCCceeeccCCc--ccHHHHHhhccCCCcEeecccCCCCCCCC-------
Q 008604 225 K-DVDMVIEAIIENVSLKQQIFADLEK-YCPPHCILASNTST--IDLNLIGERTYSKDRIVGAHFFSPAHVMP------- 293 (560)
Q Consensus 225 ~-~aDlVIeav~e~~~~k~~~~~~l~~-~~~~~~ii~sntSs--l~i~~la~~~~~~~r~~g~hf~~P~~~~~------- 293 (560)
. +||+||.|+|. ..-..++.++.. .++++++|++.+|+ .++..+....+...+|+|.|++.++....
T Consensus 423 ~~~aDvVILavP~--~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~~HPm~G~e~~~~G~~~~~ 500 (667)
T PLN02712 423 EEHPEVILLCTSI--LSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILCTHPMFGPESGKNGWNNLA 500 (667)
T ss_pred hcCCCEEEECCCh--HHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceEeeCCCCCccccccchhhhh
Confidence 3 58999999993 455666677654 57789999877766 45566666655556799999997665321
Q ss_pred -eEE--EEeCCCCcHHHHHHHHHHHHhcCCceEEec
Q 008604 294 -LLE--IVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (560)
Q Consensus 294 -lvE--iv~g~~t~~e~~~~~~~l~~~lGk~~i~v~ 326 (560)
+++ ++.++....+.++.+..++..+|..++.+.
T Consensus 501 ~lf~~~~v~~~~~~~~~~~~l~~l~~~lGa~vv~ms 536 (667)
T PLN02712 501 FVFDKVRIGSDDRRVSRCDSFLDIFAREGCRMVEMS 536 (667)
T ss_pred hhccCcEeCCCcchHHHHHHHHHHHHHcCCEEEEeC
Confidence 111 223444456667777899999998888875
No 161
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=98.96 E-value=8.7e-08 Score=95.37 Aligned_cols=147 Identities=18% Similarity=0.174 Sum_probs=97.6
Q ss_pred hHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC-cccccCCCEEEEeccCC
Q 008604 159 GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD-YESFKDVDMVIEAIIEN 237 (560)
Q Consensus 159 G~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~~~~aDlVIeav~e~ 237 (560)
|.+||.+|+++||+|++||+++++.+... .+.+.+.|. ..+++ .+.+++||+||.|+|++
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~------~e~LaeaGA-------------~~AaS~aEAAa~ADVVIL~LPd~ 92 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDL------WKKVEDAGV-------------KVVSDDKEAAKHGEIHVLFTPFG 92 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhh------hHHHHHCCC-------------eecCCHHHHHhCCCEEEEecCCH
Confidence 89999999999999999999987654211 112233342 12233 36788999999999976
Q ss_pred hHHHHHHHHHHHhhcCCCceeeccCCcccHHHHHhhcc----CCCcEeecccCCCCC----CCCeEEEEeC------CCC
Q 008604 238 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTY----SKDRIVGAHFFSPAH----VMPLLEIVRT------NQT 303 (560)
Q Consensus 238 ~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~~la~~~~----~~~r~~g~hf~~P~~----~~~lvEiv~g------~~t 303 (560)
..++.. +..+.+.++++++|+ ++||+++..+...+. ...+-+|+..|.|.. ...-.=++.| ...
T Consensus 93 aaV~eV-l~GLaa~L~~GaIVI-D~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~~~~~~~~~~~~~~~~~~~~A 170 (341)
T TIGR01724 93 KGTFSI-ARTIIEHVPENAVIC-NTCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPGTPQHGHYVIGGKPTAGKEMA 170 (341)
T ss_pred HHHHHH-HHHHHhcCCCCCEEE-ECCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCCCCCCceeeeccccccccccC
Confidence 666554 477888889998875 678888765544332 122334544444421 1111112222 235
Q ss_pred cHHHHHHHHHHHHhcCCceEEec
Q 008604 304 SPQVIVDLLDIGKKIKKTPIVVG 326 (560)
Q Consensus 304 ~~e~~~~~~~l~~~lGk~~i~v~ 326 (560)
++|.++.+..+.+..|+.++++.
T Consensus 171 ~ee~i~~~~el~~~~~~~~~~~p 193 (341)
T TIGR01724 171 TEEQISKCVELAKSTGKKAYVVP 193 (341)
T ss_pred CHHHHHHHHHHHHHhCCCeeecc
Confidence 78999999999999999999985
No 162
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=98.95 E-value=2.3e-09 Score=105.75 Aligned_cols=91 Identities=18% Similarity=0.198 Sum_probs=78.4
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|+|||++++|+||+++||||+|++ + +.+.++|+++++.+ +
T Consensus 150 l~ltg~~~~a~eA~~~Glv~~v~~---~-~~a~~~a~~l~~~~------------------------------------~ 189 (243)
T PRK07854 150 MLLGAEKLTAEQALATGMANRIGT---L-ADAQAWAAEIAGLA------------------------------------P 189 (243)
T ss_pred HHHcCCCcCHHHHHHCCCcccccC---H-HHHHHHHHHHHhCC------------------------------------H
Confidence 579999999999999999999975 3 37899999998842 1
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhccCCCC
Q 008604 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~~ 133 (560)
.++..+|++++.. .+++++++.|...+..++.|+++++++.+|++||++..
T Consensus 190 ~a~~~~K~~l~~~--~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 240 (243)
T PRK07854 190 LALQHAKRVLNDD--GAIEEAWPAHKELFDKAWASQDAIEAQVARIEKRPPKF 240 (243)
T ss_pred HHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHhcCchHHHHHHHHhCCCCCCC
Confidence 3777889988875 67899999999999999999999999999999987654
No 163
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=98.94 E-value=6.9e-09 Score=107.84 Aligned_cols=166 Identities=12% Similarity=0.104 Sum_probs=104.1
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC-C---HHHHHhhhcccccccCcc
Q 008604 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKM-T---QEKFEKTISLLTGVLDYE 222 (560)
Q Consensus 147 ~~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~-~---~~~~~~~~~~i~~~~~~~ 222 (560)
+++|+|||+|.||..+|..|+++|++|+++|+++. .+... +.|.. + ..+......++..+++.+
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~-----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELR-----------AHGLTLTDYRGRDVRVPPSAIAFSTDPA 69 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHH-----------hcCceeecCCCcceecccceeEeccChh
Confidence 46899999999999999999999999999999653 22211 11110 0 000001112344455666
Q ss_pred cccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccH-HHHHhhccCCCcEeecccC-----CCCCC--CCe
Q 008604 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL-NLIGERTYSKDRIVGAHFF-----SPAHV--MPL 294 (560)
Q Consensus 223 ~~~~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i-~~la~~~~~~~r~~g~hf~-----~P~~~--~~l 294 (560)
.+.++|+||.|++.. ...++++.+.+.++++++|++.++++.. ..+...++....+.|.+++ .|... ...
T Consensus 70 ~~~~~D~vil~vk~~--~~~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~~~~~~~~~~g~~~~~~~~~~pg~~~~~~~ 147 (341)
T PRK08229 70 ALATADLVLVTVKSA--ATADAAAALAGHARPGAVVVSFQNGVRNADVLRAALPGATVLAGMVPFNVISRGPGAFHQGTS 147 (341)
T ss_pred hccCCCEEEEEecCc--chHHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHHhCCCCcEEEEEEEEEEEecCCceEEecCC
Confidence 788999999999754 3467788899989999988877777764 4565555433334444443 22110 000
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhcCCceEEecCcc
Q 008604 295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCT 329 (560)
Q Consensus 295 vEiv~g~~t~~e~~~~~~~l~~~lGk~~i~v~d~~ 329 (560)
-++.-+. .+.++.+..++...|.....++|..
T Consensus 148 g~l~~~~---~~~~~~~~~~l~~~g~~~~~~~di~ 179 (341)
T PRK08229 148 GALAIEA---SPALRPFAAAFARAGLPLVTHEDMR 179 (341)
T ss_pred CceEecC---CchHHHHHHHHHhcCCCceecchhH
Confidence 1122221 2446788888888887777777743
No 164
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.94 E-value=8.8e-10 Score=112.28 Aligned_cols=85 Identities=14% Similarity=0.118 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCcHHHHHHHhCHHH-HHHHHHHHHHHhCC---CCC
Q 008604 459 EKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLGSKY-IYSRLEEWSSLYGE---FFK 534 (560)
Q Consensus 459 ~~~i~~r~l~~~~~ea~~~l~egv~~~~~diD~~~~~g~g~p~~~gGp~~~~d~~G~~~-~~~~~~~~~~~~~~---~~~ 534 (560)
.-+|.||++.+++|||++++++||+ +++|||.+|++|+|+|+..-|||+.+|.+|++. +.+.++++...+.+ .+.
T Consensus 187 pGFi~NRl~~a~~~EA~~lv~eGva-s~edID~a~~~g~g~r~~~~Gpf~~~Dl~Gld~g~~~~~~~~g~~~~~~~~~~~ 265 (321)
T PRK07066 187 PGFIADRLLEALWREALHLVNEGVA-TTGEIDDAIRFGAGIRWSFMGTFLTYTLAGGDAGMRHFMQQFGPALELPWTKLV 265 (321)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCccCcCHHHHhhhcChHHHHHHHHHHhhhhhhHHHHhcC
Confidence 3589999999999999999999999 899999999999999844459999999999997 55666665544321 244
Q ss_pred CcHHHHHHHH
Q 008604 535 PCAFLAERAG 544 (560)
Q Consensus 535 p~~~l~~~~~ 544 (560)
+++++.++++
T Consensus 266 ~p~~~~~~~~ 275 (321)
T PRK07066 266 APELTDALID 275 (321)
T ss_pred CCcccHHHHH
Confidence 4445555553
No 165
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=98.89 E-value=3.5e-08 Score=98.25 Aligned_cols=141 Identities=19% Similarity=0.228 Sum_probs=102.4
Q ss_pred HHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCCEEEEeccCChH
Q 008604 162 IATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVS 239 (560)
Q Consensus 162 iA~~l~~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~e~~~ 239 (560)
||..|.++| ++|+.+|++++.++.+. +.|..+. ...+.+.+.+||+||.|+| +.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~-----------~~g~~~~-----------~~~~~~~~~~~DlvvlavP--~~ 56 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAAL-----------ELGIIDE-----------ASTDIEAVEDADLVVLAVP--VS 56 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHH-----------HTTSSSE-----------EESHHHHGGCCSEEEE-S---HH
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHH-----------HCCCeee-----------ccCCHhHhcCCCEEEEcCC--HH
Confidence 678888998 78999999999877653 4454421 1222567899999999999 77
Q ss_pred HHHHHHHHHHhhcCCCceeeccCCcc--cHHHHHhhccCCCcEeecccCCCC------------CCCCeEEEEeCCCCcH
Q 008604 240 LKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTYSKDRIVGAHFFSPA------------HVMPLLEIVRTNQTSP 305 (560)
Q Consensus 240 ~k~~~~~~l~~~~~~~~ii~sntSsl--~i~~la~~~~~~~r~~g~hf~~P~------------~~~~lvEiv~g~~t~~ 305 (560)
.-..+++++.++++++++|.+-+|.- ++..+.+..+...+|+|.|++..+ .....+-+++++.+++
T Consensus 57 ~~~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~ 136 (258)
T PF02153_consen 57 AIEDVLEEIAPYLKPGAIVTDVGSVKAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDP 136 (258)
T ss_dssp HHHHHHHHHHCGS-TTSEEEE--S-CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-H
T ss_pred HHHHHHHHhhhhcCCCcEEEEeCCCCHHHHHHHHHhcCcccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChH
Confidence 78899999999999999998777764 344555555557899999998644 1356788999999999
Q ss_pred HHHHHHHHHHHhcCCceEEec
Q 008604 306 QVIVDLLDIGKKIKKTPIVVG 326 (560)
Q Consensus 306 e~~~~~~~l~~~lGk~~i~v~ 326 (560)
+.++.+..++..+|..++.+.
T Consensus 137 ~~~~~~~~l~~~~Ga~~~~~~ 157 (258)
T PF02153_consen 137 EALELVEELWEALGARVVEMD 157 (258)
T ss_dssp HHHHHHHHHHHHCT-EEEE--
T ss_pred HHHHHHHHHHHHCCCEEEEcC
Confidence 999999999999998888774
No 166
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=98.89 E-value=4.2e-09 Score=104.36 Aligned_cols=90 Identities=17% Similarity=0.203 Sum_probs=81.5
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|++||++++|++|+++||||+|||++++++++.++|+++++.+ +
T Consensus 158 llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 201 (249)
T PRK07110 158 MLLTARYYRGAELKKRGVPFPVLPRAEVLEKALELARSLAEKP------------------------------------R 201 (249)
T ss_pred HHHcCCccCHHHHHHcCCCeEEeChHHHHHHHHHHHHHHHhCC------------------------------------H
Confidence 5789999999999999999999999999999999999999852 1
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhcCHHHHHHHHHHH
Q 008604 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFF 126 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~ 126 (560)
.+...+|+.++.....+++++++.|...+..++.|+++++++....
T Consensus 202 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~~~~ 247 (249)
T PRK07110 202 HSLVLLKDHLVADRRRRLPEVIEQEVAMHEKTFHQPEVKRRIESLY 247 (249)
T ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhCCHhHHHHHHHhc
Confidence 3777899999998888999999999999999999999999988643
No 167
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=98.88 E-value=3.2e-08 Score=105.68 Aligned_cols=177 Identities=14% Similarity=0.127 Sum_probs=119.3
Q ss_pred chHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc----ccCCCEEEEe
Q 008604 158 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES----FKDVDMVIEA 233 (560)
Q Consensus 158 mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~----~~~aDlVIea 233 (560)
||.+||.+|+++|++|++||+++++.+...+. .|.- ..+....++++ +..+|+||.+
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~----------~g~~---------~g~~~~~s~~e~v~~l~~~~~Ii~m 61 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAE----------EGKG---------KKIVPAYTLEEFVASLEKPRKILLM 61 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHh----------hCCC---------CCeEeeCCHHHHHhhCCCCCEEEEE
Confidence 89999999999999999999999988754320 1100 01223334432 3458999999
Q ss_pred ccCChHHHHHHHHHHHhhcCCCceeeccCCcccHH--HHHhhccCCCcEeecccCC-CCCC-------CCeEEEEeCCCC
Q 008604 234 IIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN--LIGERTYSKDRIVGAHFFS-PAHV-------MPLLEIVRTNQT 303 (560)
Q Consensus 234 v~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~--~la~~~~~~~r~~g~hf~~-P~~~-------~~lvEiv~g~~t 303 (560)
||.+..+... +..+.+.+.++.||+..+++.+-. ..++.+. -.|+||+. |+.. .+ .-++.|
T Consensus 62 v~~g~~v~~V-i~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~----~~Gi~fvdapVSGG~~gA~~G~-siM~GG--- 132 (459)
T PRK09287 62 VKAGAPVDAV-IEQLLPLLEKGDIIIDGGNSNYKDTIRREKELA----EKGIHFIGMGVSGGEEGALHGP-SIMPGG--- 132 (459)
T ss_pred CCCchHHHHH-HHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHH----hcCCeEEecCCCCCHHHHhcCC-EEEEeC---
Confidence 9988766554 577888888888876544333322 3333332 23677763 5543 34 334445
Q ss_pred cHHHHHHHHHHHHhcCCce-------EEecC-cccc---chhchH-HH---HHHHHHHHHH--cCCCHHHHHHHHH
Q 008604 304 SPQVIVDLLDIGKKIKKTP-------IVVGN-CTGF---AVNRMF-FP---YTQAAFLLVE--RGTDLYLIDRAIT 362 (560)
Q Consensus 304 ~~e~~~~~~~l~~~lGk~~-------i~v~d-~~G~---i~nri~-~~---~~~ea~~l~~--~G~~~~dID~a~~ 362 (560)
++++++.++++++.++... .++++ ..|. ++|+.+ .. .+.|++.+.+ .|++++++-.++.
T Consensus 133 ~~~a~~~~~piL~~ia~~~~~g~~c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~~ 208 (459)
T PRK09287 133 QKEAYELVAPILEKIAAKVEDGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVFA 208 (459)
T ss_pred CHHHHHHHHHHHHHHhhhhcCCCCceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 7899999999999999776 77875 3442 455444 33 3689998887 4889999988885
No 168
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=98.85 E-value=1e-08 Score=96.65 Aligned_cols=108 Identities=23% Similarity=0.318 Sum_probs=72.7
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCC--HHH----HHhh--hccccccc
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMT--QEK----FEKT--ISLLTGVL 219 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~--~~~----~~~~--~~~i~~~~ 219 (560)
+||+|||+|.+|..+|..|+.+|++|+.+|+|++.++...+ |... +.. ..+. -+++++++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~------------g~~p~~E~~l~~ll~~~~~~~~l~~t~ 68 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNN------------GELPIYEPGLDELLKENVSAGRLRATT 68 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHT------------TSSSS-CTTHHHHHHHHHHTTSEEEES
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhh------------ccccccccchhhhhccccccccchhhh
Confidence 58999999999999999999999999999999998775432 2211 101 1111 24677888
Q ss_pred Cccc-ccCCCEEEEeccC--------ChHHHHHHHHHHHhhcCCCceeeccCCcccHH
Q 008604 220 DYES-FKDVDMVIEAIIE--------NVSLKQQIFADLEKYCPPHCILASNTSTIDLN 268 (560)
Q Consensus 220 ~~~~-~~~aDlVIeav~e--------~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~ 268 (560)
+.+. +.+||++|.|||. |+..-......|.+++.++.+|+ .-||+|+.
T Consensus 69 ~~~~ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV-~~STvppG 125 (185)
T PF03721_consen 69 DIEEAIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVV-IESTVPPG 125 (185)
T ss_dssp EHHHHHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEE-ESSSSSTT
T ss_pred hhhhhhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEE-EccEEEEe
Confidence 8755 8999999999963 44556777888999999988775 56666653
No 169
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=98.84 E-value=3.7e-09 Score=110.69 Aligned_cols=132 Identities=16% Similarity=0.199 Sum_probs=82.8
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHH----------Hhhhcc-CCCchhh--------hcccCCCCCchh
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWA----------LDILEH-RRPWVAT--------LYKTDKIEPLGE 61 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a----------~~la~~-~~p~~~~--------~~~~~~~~~~~~ 61 (560)
|+|||++|+|++|+++||||+|||++++.+.+.+++ .++... ..++... ....+-++.. .
T Consensus 168 l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~-~ 246 (379)
T PLN02874 168 LALTGARLNGKEMVACGLATHFVPSEKLPELEKRLLNLNSGDESAVQEAIEEFSKDVQADEDSILNKQSWINECFSKD-T 246 (379)
T ss_pred HHHcCCcccHHHHHHcCCccEEeCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHhCCC-C
Confidence 579999999999999999999999888876322221 011100 0000000 0000000000 0
Q ss_pred HHHHHH------------HHHHHHHHh-CCCCCcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhc---CHHHHHHHHHH
Q 008604 62 AREIFK------------FARAQARKQ-APNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLR---SETCKSLVHIF 125 (560)
Q Consensus 62 ~~~~~~------------~~~~~~~~~-~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~---s~~~~~~~~aF 125 (560)
....++ ++.+.++.- .+++.++..+|++++.+...+++++++.|.+....++. ++|+++++++|
T Consensus 247 ~~eii~al~~~~~~~~~~~A~~~a~~l~~~sP~al~~tk~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~D~~EGv~Af 326 (379)
T PLN02874 247 VEEIIKAFESEASKTGNEWIKETLKGLRRSSPTGLKITLRSIREGRKQSLAECLKKEFRLTMNILRSTVSDDVYEGIRAL 326 (379)
T ss_pred HHHHHHHHhhcccccccHHHHHHHHHHHhcChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCcCcchhhccceE
Confidence 011111 122333332 35677899999999998888999999999888888877 99999999999
Q ss_pred H-hc-cCCCC
Q 008604 126 F-AQ-RGTSK 133 (560)
Q Consensus 126 ~-~k-r~~~~ 133 (560)
+ +| |+++.
T Consensus 327 lidK~r~P~w 336 (379)
T PLN02874 327 VIDKDNAPKW 336 (379)
T ss_pred EEcCCCCCCC
Confidence 7 77 55544
No 170
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=98.83 E-value=4.7e-08 Score=97.52 Aligned_cols=145 Identities=19% Similarity=0.190 Sum_probs=104.9
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 008604 148 KKVAILGGGLMGSGIATALILSNY----PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (560)
++|+|||+|.||++|+..+.++|. +|+++|++++.. +. ....++.+.
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~-----------------~~------------~~~~~~~~~ 54 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT-----------------PF------------VYLQSNEEL 54 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC-----------------Ce------------EEeCChHHH
Confidence 479999999999999999999872 499999887532 00 011122234
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccHHHHHhhccCCCcEeecccCCCCCCCC-eEEEEeCCC
Q 008604 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMP-LLEIVRTNQ 302 (560)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~~la~~~~~~~r~~g~hf~~P~~~~~-lvEiv~g~~ 302 (560)
+.+||+||.|++ ...-..++.++.++++++ +|+|..++++++.+...++...+++.+.+..|..... ..-++++..
T Consensus 55 ~~~~D~Vilavk--p~~~~~vl~~i~~~l~~~-~iIS~~aGi~~~~l~~~~~~~~~vvr~mPn~p~~~g~g~t~i~~~~~ 131 (260)
T PTZ00431 55 AKTCDIIVLAVK--PDLAGKVLLEIKPYLGSK-LLISICGGLNLKTLEEMVGVEAKIVRVMPNTPSLVGQGSLVFCANNN 131 (260)
T ss_pred HHhCCEEEEEeC--HHHHHHHHHHHHhhccCC-EEEEEeCCccHHHHHHHcCCCCeEEEECCCchhHhcceeEEEEeCCC
Confidence 678999999997 556678888888777655 5568888999988887765444455555545554433 344567777
Q ss_pred CcHHHHHHHHHHHHhcCCceEE
Q 008604 303 TSPQVIVDLLDIGKKIKKTPIV 324 (560)
Q Consensus 303 t~~e~~~~~~~l~~~lGk~~i~ 324 (560)
.+++..+.+..++..+|....+
T Consensus 132 ~~~~~~~~v~~l~~~~G~~~~v 153 (260)
T PTZ00431 132 VDSTDKKKVIDIFSACGIIQEI 153 (260)
T ss_pred CCHHHHHHHHHHHHhCCcEEEE
Confidence 8889999999999999976644
No 171
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=98.83 E-value=1.2e-07 Score=101.85 Aligned_cols=204 Identities=16% Similarity=0.206 Sum_probs=126.0
Q ss_pred ceEEEEEcCccchHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHH----HHHHHHHHHcCCCCHHHHHhhhcccccccC
Q 008604 147 VKKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRV----RANLQSRVKKGKMTQEKFEKTISLLTGVLD 220 (560)
Q Consensus 147 ~~~V~VIG~G~mG~~iA~~l~~~--G~~V~l~d~~~~~~~~~~~~i----~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 220 (560)
+++|+|||+|.+|..+|..|+.+ |++|+.+|+++++++...+.. +..++.++.++ .-.++.++++
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~---------~~~~l~~t~~ 71 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQC---------RGKNLFFSTD 71 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHh---------hcCCEEEEcC
Confidence 36899999999999999999988 588999999999987643221 01111111110 1124778888
Q ss_pred cc-cccCCCEEEEeccC-------------ChHHHHHHHHHHHhhcCCCceeeccCCcccHH---HHHhhccCCCcEeec
Q 008604 221 YE-SFKDVDMVIEAIIE-------------NVSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGA 283 (560)
Q Consensus 221 ~~-~~~~aDlVIeav~e-------------~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~---~la~~~~~~~r~~g~ 283 (560)
++ ++.+||++|.||+. |+..-....++|.++++++++|+ ..||+|+. .+...+.... -|.
T Consensus 72 ~~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv-~~STvp~Gtt~~~~~~l~~~~--~g~ 148 (473)
T PLN02353 72 VEKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVV-EKSTVPVKTAEAIEKILTHNS--KGI 148 (473)
T ss_pred HHHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEE-EeCCCCCChHHHHHHHHHhhC--CCC
Confidence 75 68999999999952 33355677788999999888765 55666543 3322221100 021
Q ss_pred cc---CCCCCCC---------CeEEEE-eCC--CCcHHHHHHHHHHHHhcCC-ceEEecCc----cccchhchH----HH
Q 008604 284 HF---FSPAHVM---------PLLEIV-RTN--QTSPQVIVDLLDIGKKIKK-TPIVVGNC----TGFAVNRMF----FP 339 (560)
Q Consensus 284 hf---~~P~~~~---------~lvEiv-~g~--~t~~e~~~~~~~l~~~lGk-~~i~v~d~----~G~i~nri~----~~ 339 (560)
.| ++|-... ..--|+ .+. .+.++..+.+..++..+-+ .++.+.+. -..++.+.+ .+
T Consensus 149 ~f~v~~~PErl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~Ia 228 (473)
T PLN02353 149 NFQILSNPEFLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRIS 228 (473)
T ss_pred CeEEEECCCccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHHHH
Confidence 12 1332111 111243 443 2225678888888887643 45555431 122343333 36
Q ss_pred HHHHHHHHHH-cCCCHHHHHHHHH
Q 008604 340 YTQAAFLLVE-RGTDLYLIDRAIT 362 (560)
Q Consensus 340 ~~~ea~~l~~-~G~~~~dID~a~~ 362 (560)
++||...+.+ .|++..+|-.++.
T Consensus 229 f~NEla~lce~~giD~~eV~~~~~ 252 (473)
T PLN02353 229 SVNAMSALCEATGADVSQVSHAVG 252 (473)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHhC
Confidence 6899888775 6899999999986
No 172
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=98.83 E-value=9.2e-09 Score=102.30 Aligned_cols=95 Identities=24% Similarity=0.256 Sum_probs=82.8
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|+|||++++|+||+++||||+|||+++++++|.+++++++..+ |
T Consensus 158 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 201 (258)
T PRK06190 158 MSLTGDFLDAADALRAGLVTEVVPHDELLPRARRLAASIAGNN-P----------------------------------- 201 (258)
T ss_pred HHHhCCccCHHHHHHcCCCeEecCHhHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence 5789999999999999999999999999999999999998852 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhcC---HHHHHHHHHHHhccCC
Q 008604 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRS---ETCKSLVHIFFAQRGT 131 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s---~~~~~~~~aF~~kr~~ 131 (560)
.+...+|++++.....+++++++.|...+..++.| ....+....|.++-++
T Consensus 202 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 255 (258)
T PRK06190 202 AAVRALKASYDDGAAAQTGDALALEAEAARAHNRSVSPDGIAARREAVMARGRA 255 (258)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhhhh
Confidence 37788999999888889999999999999999998 6667777777775443
No 173
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=98.82 E-value=5e-09 Score=96.23 Aligned_cols=105 Identities=23% Similarity=0.286 Sum_probs=74.0
Q ss_pred EEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccCC
Q 008604 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDV 227 (560)
Q Consensus 149 ~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~a 227 (560)
||+|||+|.||.++|..++.+|++|++|.++++.++...+. .......+. ...-..+..++|+ +.++++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~--------~~n~~~~~~--~~l~~~i~~t~dl~~a~~~a 70 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINET--------RQNPKYLPG--IKLPENIKATTDLEEALEDA 70 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHH--------TSETTTSTT--SBEETTEEEESSHHHHHTT-
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHh--------CCCCCCCCC--cccCcccccccCHHHHhCcc
Confidence 79999999999999999999999999999999776643321 000000000 1122356677887 468999
Q ss_pred CEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcc
Q 008604 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI 265 (560)
Q Consensus 228 DlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl 265 (560)
|+||.++|- ..-+.+++++.+++++++++++.+-++
T Consensus 71 d~IiiavPs--~~~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 71 DIIIIAVPS--QAHREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp SEEEE-S-G--GGHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred cEEEecccH--HHHHHHHHHHhhccCCCCEEEEecCCc
Confidence 999999994 345789999999999999888776555
No 174
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=98.82 E-value=1.9e-07 Score=87.74 Aligned_cols=154 Identities=19% Similarity=0.196 Sum_probs=103.0
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 008604 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK-FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (560)
Q Consensus 147 ~~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (560)
|++++|+|+|.||.++|..|+++||+|++-.++.+ +++.+.+. ....+++.+..++++
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~---------------------l~~~i~~~~~~dA~~ 59 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAA---------------------LGPLITGGSNEDAAA 59 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHh---------------------hccccccCChHHHHh
Confidence 47899999999999999999999999999976654 44332211 112345556667889
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcc----------------cHHH-HHhhccCCCcEeec-ccC-
Q 008604 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI----------------DLNL-IGERTYSKDRIVGA-HFF- 286 (560)
Q Consensus 226 ~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl----------------~i~~-la~~~~~~~r~~g~-hf~- 286 (560)
.||+||.+|| .+--..+.+++..... +.||++.|-.+ +.++ +++.++.. +++.. |-.
T Consensus 60 ~aDVVvLAVP--~~a~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~a-kVVkAFn~i~ 135 (211)
T COG2085 60 LADVVVLAVP--FEAIPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGA-KVVKAFNTIP 135 (211)
T ss_pred cCCEEEEecc--HHHHHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCc-chhhhhcccC
Confidence 9999999999 5566778888877666 66666544321 2222 33444443 44332 111
Q ss_pred -----C-CCCCCCeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEecC
Q 008604 287 -----S-PAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (560)
Q Consensus 287 -----~-P~~~~~lvEiv~g~~t~~e~~~~~~~l~~~lGk~~i~v~d 327 (560)
+ +....+..-.++|+ +.+..+.+..+.+.+|..|+.++.
T Consensus 136 a~~l~~~~~~~~~~~v~vagD--D~~Ak~~v~~L~~~iG~~~ld~G~ 180 (211)
T COG2085 136 AAVLADLAKPGGRRDVLVAGD--DAEAKAVVAELAEDIGFRPLDAGP 180 (211)
T ss_pred HHHhccCCCcCCceeEEEecC--cHHHHHHHHHHHHhcCcceeeccc
Confidence 1 11113444455663 778899999999999999999864
No 175
>PLN02712 arogenate dehydrogenase
Probab=98.81 E-value=8.2e-08 Score=107.37 Aligned_cols=153 Identities=15% Similarity=0.121 Sum_probs=102.5
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-c-
Q 008604 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F- 224 (560)
Q Consensus 147 ~~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~- 224 (560)
.++|+|||+|.||..+|..+.+.|++|+++|++... +.+ .+.| +...++.++ +
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A-----------~~~G-------------v~~~~d~~e~~~ 106 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAA-----------RSLG-------------VSFFLDPHDLCE 106 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHH-----------HHcC-------------CEEeCCHHHHhh
Confidence 358999999999999999999999999999998543 111 1112 112233433 3
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHH-hhcCCCceeeccCCccc--HHHHHhhccCCCcEeecccCCCCCC-----CCeEE
Q 008604 225 KDVDMVIEAIIENVSLKQQIFADLE-KYCPPHCILASNTSTID--LNLIGERTYSKDRIVGAHFFSPAHV-----MPLLE 296 (560)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~~~~~l~-~~~~~~~ii~sntSsl~--i~~la~~~~~~~r~~g~hf~~P~~~-----~~lvE 296 (560)
.+||+||.|+|. ..-..++.++. ..++++++|++.+|.-. +..+...++...+|+|+|++..+.. .....
T Consensus 107 ~~aDvViLavP~--~~~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~~~~~v~~HPMaG~e~~~~g~~~~~~ 184 (667)
T PLN02712 107 RHPDVILLCTSI--ISTENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPEDFDIICSHPMFGPQSAKHGWDGLRF 184 (667)
T ss_pred cCCCEEEEcCCH--HHHHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhcCCCCeEEeeCCcCCCccccchhccCcE
Confidence 469999999993 45567777775 56788998876555432 3345555544457999999864431 11122
Q ss_pred EEe-----CCCCcHHHHHHHHHHHHhcCCceEEec
Q 008604 297 IVR-----TNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (560)
Q Consensus 297 iv~-----g~~t~~e~~~~~~~l~~~lGk~~i~v~ 326 (560)
++. .+....+.++.+..+++.+|..++.+.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~l~~l~~~lGa~v~~ms 219 (667)
T PLN02712 185 VYEKVRIGNEELRVSRCKSFLEVFEREGCKMVEMS 219 (667)
T ss_pred EEeeccCCCccccHHHHHHHHHHHHHcCCEEEEeC
Confidence 222 222334567788899999999988885
No 176
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.80 E-value=1.6e-08 Score=101.50 Aligned_cols=166 Identities=17% Similarity=0.203 Sum_probs=106.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cccC
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD 226 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 226 (560)
++|+|||+|.+|.++|..++++|++|++|.++++..++.... + .-.+++. |.. .-..+..++|++ .+.+
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~-~-~N~~yLp-~i~-------lp~~l~at~Dl~~a~~~ 71 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINET-R-ENPKYLP-GIL-------LPPNLKATTDLAEALDG 71 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhc-C-cCccccC-Ccc-------CCcccccccCHHHHHhc
Confidence 689999999999999999999999999999999987764321 0 0111111 111 123566778874 5777
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcc------cHHHHHhhccCCCcEeecccCCCC-------CCCC
Q 008604 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI------DLNLIGERTYSKDRIVGAHFFSPA-------HVMP 293 (560)
Q Consensus 227 aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl------~i~~la~~~~~~~r~~g~hf~~P~-------~~~~ 293 (560)
||+|+.+|| ...-+.+++++..++++++++++.+-++ .++++.+..-...++ + +.+.| ...|
T Consensus 72 ad~iv~avP--s~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~-~--vLSGPs~A~EVa~g~p 146 (329)
T COG0240 72 ADIIVIAVP--SQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPI-A--VLSGPSFAKEVAQGLP 146 (329)
T ss_pred CCEEEEECC--hHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeE-E--EEECccHHHHHhcCCC
Confidence 999999999 5567888888888888999888765443 345554433111111 1 11222 2334
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCceEEecCccc
Q 008604 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG 330 (560)
Q Consensus 294 lvEiv~g~~t~~e~~~~~~~l~~~lGk~~i~v~d~~G 330 (560)
..-++.+ .+++..+.++.++..--.+++...|..|
T Consensus 147 ta~~vas--~d~~~a~~v~~~f~~~~Frvy~~~Dv~G 181 (329)
T COG0240 147 TAVVVAS--NDQEAAEKVQALFSSPYFRVYTSTDVIG 181 (329)
T ss_pred cEEEEec--CCHHHHHHHHHHhCCCcEEEEecCchhh
Confidence 4445555 4677777777776653333444445444
No 177
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=98.77 E-value=2.4e-08 Score=99.51 Aligned_cols=93 Identities=30% Similarity=0.425 Sum_probs=82.1
Q ss_pred CcccCCCCChHHHHhCCCcceecCC-cchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAP-NQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPN 79 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~-~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (560)
|++||+.++|+||+++||||++|+. +++++.+.++++++++ .|
T Consensus 162 l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~a~--~~---------------------------------- 205 (257)
T COG1024 162 LLLTGEPISAAEALELGLVDEVVPDAEELLERALELARRLAA--PP---------------------------------- 205 (257)
T ss_pred HHHcCCcCCHHHHHHcCCcCeeeCCHHHHHHHHHHHHHHHcc--CH----------------------------------
Confidence 5799999999999999999999985 6999999999999886 12
Q ss_pred CCcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhccCC
Q 008604 80 LTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGT 131 (560)
Q Consensus 80 ~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~ 131 (560)
.+...+|+.++.+...++++.+..|...+...+.++++++++.+|++ |++
T Consensus 206 -~a~~~~k~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~eg~~a~~~-r~p 255 (257)
T COG1024 206 -LALAATKRLVRAALEADLAEALEAEALAFARLFSSEDFREGVRAFLE-RKP 255 (257)
T ss_pred -HHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhcChhHHHHHHHHHc-cCC
Confidence 27778899999887777899999999999998999999999999999 544
No 178
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.74 E-value=2.2e-08 Score=83.87 Aligned_cols=91 Identities=22% Similarity=0.242 Sum_probs=66.0
Q ss_pred EEEEEcCccchHHHHHHHHhCC---CcEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc
Q 008604 149 KVAILGGGLMGSGIATALILSN---YPVILK-EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (560)
Q Consensus 149 ~V~VIG~G~mG~~iA~~l~~~G---~~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 224 (560)
||+|||+|.||.+|+..|.++| ++|.++ +++++++++..++ .+ ..+...+..+.+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~----------~~-----------~~~~~~~~~~~~ 59 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKE----------YG-----------VQATADDNEEAA 59 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHH----------CT-----------TEEESEEHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHh----------hc-----------cccccCChHHhh
Confidence 7999999999999999999999 999966 9999988765422 11 011111334667
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCC
Q 008604 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (560)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntS 263 (560)
.++|+||.|++ ...-.+++.++ ....++.+++|-+.
T Consensus 60 ~~advvilav~--p~~~~~v~~~i-~~~~~~~~vis~~a 95 (96)
T PF03807_consen 60 QEADVVILAVK--PQQLPEVLSEI-PHLLKGKLVISIAA 95 (96)
T ss_dssp HHTSEEEE-S---GGGHHHHHHHH-HHHHTTSEEEEEST
T ss_pred ccCCEEEEEEC--HHHHHHHHHHH-hhccCCCEEEEeCC
Confidence 89999999998 44556788888 66677887776543
No 179
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=98.70 E-value=8.9e-09 Score=95.06 Aligned_cols=92 Identities=24% Similarity=0.365 Sum_probs=67.5
Q ss_pred cccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCCC
Q 008604 2 MLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNLT 81 (560)
Q Consensus 2 lltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (560)
.+.+|..+|+||+++||||.|||-++|++++.+||+++.+++ | .
T Consensus 181 wfLcR~Y~A~eal~MGlVN~Vvp~~~LE~e~v~W~~E~l~kS-P-----------------------------------~ 224 (282)
T COG0447 181 WFLCRQYDAEEALDMGLVNTVVPHADLEKETVQWAREMLAKS-P-----------------------------------T 224 (282)
T ss_pred hhhhhhccHHHHHhcCceeeeccHHHHHHHHHHHHHHHHhcC-h-----------------------------------H
Confidence 467899999999999999999999999999999999999963 3 2
Q ss_pred cHHHHHHHHHHhhhCChH--HHHHH-HHHHHhHHhcCHHHHHHHHHHHhccCCCC
Q 008604 82 HPIVCIDVVEAGVVSGPR--AGLQK-EAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (560)
Q Consensus 82 A~~~~~~~i~~~~~~~~~--~~l~~-E~~~f~~l~~s~~~~~~~~aF~~kr~~~~ 133 (560)
| +++++.+.+.+-+ .++.. --.+-.-.++|+|++|+..+|++||++..
T Consensus 225 A----lR~LK~Afnad~DGlaG~q~~ag~at~L~YmTdEa~EGr~AF~eKR~Pdf 275 (282)
T COG0447 225 A----LRMLKAAFNADCDGLAGLQELAGNATLLYYMTDEAQEGRDAFLEKRKPDF 275 (282)
T ss_pred H----HHHHHHHhcCCCchhhHHHHhcccceEEEEechhhhhhHHHHhhccCCCh
Confidence 3 4555555443322 12211 11112224689999999999999998754
No 180
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=98.70 E-value=3.5e-08 Score=100.51 Aligned_cols=98 Identities=19% Similarity=0.300 Sum_probs=68.8
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 008604 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (560)
+||+|||+|.||.++|..++..|+ +|+++|++++.. .+... ... +.+ .......+++++++++++++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~-~g~a~--d~~----~~~-----~~~~~~~~i~~t~d~~~~~~ 69 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIP-QGKAL--DMY----EAS-----PVGGFDTKVTGTNNYADTAN 69 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChh-HHHHH--hhh----hhh-----hccCCCcEEEecCCHHHhCC
Confidence 489999999999999999999887 899999976633 32210 000 111 11112357777888888999
Q ss_pred CCEEEEecc--------------CChHHHHHHHHHHHhhcCCCcee
Q 008604 227 VDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCIL 258 (560)
Q Consensus 227 aDlVIeav~--------------e~~~~k~~~~~~l~~~~~~~~ii 258 (560)
||+||.++. .|..+-+++.+++.++.+ ++++
T Consensus 70 aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p-~~~i 114 (305)
T TIGR01763 70 SDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSP-NPII 114 (305)
T ss_pred CCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEE
Confidence 999999986 244566677777888864 4443
No 181
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=98.69 E-value=6.8e-08 Score=84.70 Aligned_cols=115 Identities=17% Similarity=0.218 Sum_probs=69.9
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEE-EeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 008604 147 VKKVAILGGGLMGSGIATALILSNYPVIL-KEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (560)
Q Consensus 147 ~~~V~VIG~G~mG~~iA~~l~~~G~~V~l-~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (560)
-.||+|||+|.+|..++..|.++|++|.. +.++.+..+++...+ ......+..+.+.
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~----------------------~~~~~~~~~~~~~ 67 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFI----------------------GAGAILDLEEILR 67 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC------------------------TT-----TTGGGC
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCccccccccccc----------------------ccccccccccccc
Confidence 46999999999999999999999999876 467777666543211 1111122225578
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhh--cCCCceeeccCCcccHHHHHhhccCCCcEeeccc
Q 008604 226 DVDMVIEAIIENVSLKQQIFADLEKY--CPPHCILASNTSTIDLNLIGERTYSKDRIVGAHF 285 (560)
Q Consensus 226 ~aDlVIeav~e~~~~k~~~~~~l~~~--~~~~~ii~sntSsl~i~~la~~~~~~~r~~g~hf 285 (560)
++|++|.+||++ .-..+.++|... ..++.+|+=.+-+++.+-+............+|+
T Consensus 68 ~aDlv~iavpDd--aI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~~~~Ga~~~s~HP 127 (127)
T PF10727_consen 68 DADLVFIAVPDD--AIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPARERGAIVASLHP 127 (127)
T ss_dssp C-SEEEE-S-CC--HHHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHHHHTT-EEEEEEE
T ss_pred cCCEEEEEechH--HHHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhHHHCCCeEEEeCc
Confidence 999999999987 457788888876 6788887633334555555444444455566664
No 182
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=98.67 E-value=5.6e-08 Score=97.17 Aligned_cols=118 Identities=24% Similarity=0.392 Sum_probs=83.0
Q ss_pred EEEEcC-ccchHHHHHHHHhCC----CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC-ccc
Q 008604 150 VAILGG-GLMGSGIATALILSN----YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD-YES 223 (560)
Q Consensus 150 V~VIG~-G~mG~~iA~~l~~~G----~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~ 223 (560)
|+|||+ |.||.+++..++..| .+|+++|+++++++.....++...... ...+++.++| +++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~-------------~~~~i~~~~d~~~~ 67 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPL-------------ADIKVSITDDPYEA 67 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhc-------------cCcEEEECCchHHH
Confidence 689999 999999999999999 799999999987766444333222110 1235666677 588
Q ss_pred ccCCCEEEE--------------eccCChHHHHHHHHHHHhhcCCCceeeccCCcccHHHHHhhc----c-CCCcEeec
Q 008604 224 FKDVDMVIE--------------AIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERT----Y-SKDRIVGA 283 (560)
Q Consensus 224 ~~~aDlVIe--------------av~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~~la~~~----~-~~~r~~g~ 283 (560)
+++||+||+ .+.++..+++++.+++.+++ +++++..- |-|...+...+ . .+.|++|+
T Consensus 68 ~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~~--tNP~d~~t~~~~~~sg~~~~kviG~ 143 (263)
T cd00650 68 FKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIVV--SNPVDIITYLVWRYSGLPKEKVIGL 143 (263)
T ss_pred hCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEe--cCcHHHHHHHHHHHhCCCchhEEEe
Confidence 999999999 56778889999999999998 55544322 24444333322 1 24566664
No 183
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.66 E-value=1.7e-06 Score=81.91 Aligned_cols=189 Identities=14% Similarity=0.185 Sum_probs=126.1
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (560)
++|++||+|.||..|+..|.+.|++|+.||+|+++.+++. ..|.......++.+ ..+...
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~-----------~~ga~~a~sl~el~---------~~L~~p 60 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELK-----------DEGATGAASLDELV---------AKLSAP 60 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHH-----------hcCCccccCHHHHH---------HhcCCC
Confidence 4789999999999999999999999999999999887654 22311111111111 235556
Q ss_pred CEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccHHHHHhhccCCCcEeecccCCC-----CCC--CCeEEEEeC
Q 008604 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSP-----AHV--MPLLEIVRT 300 (560)
Q Consensus 228 DlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~~la~~~~~~~r~~g~hf~~P-----~~~--~~lvEiv~g 300 (560)
-.|-.+||-. ++...++.++.+.+.++-+|+...-|..-..+...-. -.-.|+||+.- ++. ....-+|.|
T Consensus 61 r~vWlMvPag-~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~--l~~kgi~flD~GTSGG~~G~~~G~~lMiGG 137 (300)
T COG1023 61 RIVWLMVPAG-DITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKL--LAEKGIHFLDVGTSGGVWGAERGYCLMIGG 137 (300)
T ss_pred cEEEEEccCC-CchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHH--HHhcCCeEEeccCCCCchhhhcCceEEecC
Confidence 7888888843 3678899999999999888876655544333322110 11258899742 111 123335566
Q ss_pred CCCcHHHHHHHHHHHHhcCC---ceEEecC-cccc----chhchHHHH---HHHHHHHHHcC---CCHHHHHHHHH
Q 008604 301 NQTSPQVIVDLLDIGKKIKK---TPIVVGN-CTGF----AVNRMFFPY---TQAAFLLVERG---TDLYLIDRAIT 362 (560)
Q Consensus 301 ~~t~~e~~~~~~~l~~~lGk---~~i~v~d-~~G~----i~nri~~~~---~~ea~~l~~~G---~~~~dID~a~~ 362 (560)
+.+.++.+.++++.+.- --.+++. ..|. |-|-|-..+ +.|.+.++++. ++.++|-++++
T Consensus 138 ---~~~a~~~~~pif~~lA~ge~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW~ 210 (300)
T COG1023 138 ---DEEAVERLEPIFKALAPGEDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEVWN 210 (300)
T ss_pred ---cHHHHHHHHHHHHhhCcCcCccccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHh
Confidence 78999999999998653 2244553 4554 346555444 57889998765 48888988887
No 184
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=98.64 E-value=3e-08 Score=91.39 Aligned_cols=97 Identities=22% Similarity=0.281 Sum_probs=84.6
Q ss_pred CcccCCCCChHHHHhCCCcceecCCc----chHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHh
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPN----QLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQ 76 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~----~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (560)
+|+|||.+++.||..+||||+||... ...+.|+++|+++.-+
T Consensus 188 LIftarvl~g~eA~~lGlVnhvv~qneegdaa~~kal~lA~eilp~---------------------------------- 233 (291)
T KOG1679|consen 188 LIFTARVLNGAEAAKLGLVNHVVEQNEEGDAAYQKALELAREILPQ---------------------------------- 233 (291)
T ss_pred HhhhheeccchhHHhcchHHHHHhcCccccHHHHHHHHHHHHhccC----------------------------------
Confidence 58999999999999999999999865 4455677777776553
Q ss_pred CCCCCcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhccCCCC
Q 008604 77 APNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (560)
Q Consensus 77 ~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~~ 133 (560)
++.|+..+|-+|+.+.+.++..++..|..-+++...+.|--+++.+|.+||.+..
T Consensus 234 --gPiavr~aKlAIn~G~evdiasgl~iEe~CYaq~i~t~drLeglaaf~ekr~p~y 288 (291)
T KOG1679|consen 234 --GPIAVRLAKLAINLGMEVDIASGLSIEEMCYAQIIPTKDRLEGLAAFKEKRKPEY 288 (291)
T ss_pred --CchhhhHHHHHhccCceecccccccHHHHHHHhcCcHHHHHHHHHHHHhhcCCCc
Confidence 3458889999999999999999999999999999999999999999999998754
No 185
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=98.61 E-value=7.7e-08 Score=91.75 Aligned_cols=104 Identities=26% Similarity=0.325 Sum_probs=75.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCC---HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-
Q 008604 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN---EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE- 222 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~-~V~l~d~~---~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~- 222 (560)
.+|+|||+|.||+.+|..|++.|+ +|+++|.+ .+.+.+-. . .. -+.|....+.....+.++.+..+.+
T Consensus 22 ~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~-~----~~--~~iG~~Ka~~~~~~l~~inp~~~i~~ 94 (200)
T TIGR02354 22 ATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQ-Y----KA--SQVGEPKTEALKENISEINPYTEIEA 94 (200)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEccccccccc-C----Ch--hhCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 689999999999999999999999 69999999 66554311 0 00 1223333333444555554433322
Q ss_pred ------------cccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceee
Q 008604 223 ------------SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILA 259 (560)
Q Consensus 223 ------------~~~~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~ 259 (560)
.+.++|+||+| .|+.+.|..++.++....+...+++
T Consensus 95 ~~~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~ 142 (200)
T TIGR02354 95 YDEKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIA 142 (200)
T ss_pred eeeeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 36789999999 7999999999999998887777765
No 186
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.59 E-value=7e-07 Score=92.64 Aligned_cols=166 Identities=14% Similarity=0.130 Sum_probs=103.1
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC---CHHHHHhhhcccccccCc-
Q 008604 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKM---TQEKFEKTISLLTGVLDY- 221 (560)
Q Consensus 146 ~~~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~---~~~~~~~~~~~i~~~~~~- 221 (560)
.+++|+|||+|.||+.+|..|+++| +|++|.++++..+...+ .+.. .++. .....++..++++
T Consensus 6 ~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~-----------~~~~~~~l~~~-~~l~~~i~~t~d~~ 72 (341)
T PRK12439 6 REPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDIND-----------NHRNSRYLGND-VVLSDTLRATTDFA 72 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHh-----------cCCCcccCCCC-cccCCCeEEECCHH
Confidence 3578999999999999999999999 79999999887654331 1100 0000 0011234556666
Q ss_pred ccccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccH------HH-HHhhccCCCcEeecccCCCCC----
Q 008604 222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL------NL-IGERTYSKDRIVGAHFFSPAH---- 290 (560)
Q Consensus 222 ~~~~~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i------~~-la~~~~~~~r~~g~hf~~P~~---- 290 (560)
+.+.++|+||.++| ...-..+++++.++++++++++|-+-++.. ++ +.+.++. .++.. ...|-.
T Consensus 73 ~a~~~aDlVilavp--s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~-~~~~~--l~GP~~a~ev 147 (341)
T PRK12439 73 EAANCADVVVMGVP--SHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPG-HPAGI--LAGPNIAREV 147 (341)
T ss_pred HHHhcCCEEEEEeC--HHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCC-CCeEE--EECCCHHHHH
Confidence 45789999999998 455677889999988888766665556654 33 3333321 12111 112211
Q ss_pred --CCCeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEecCcccc
Q 008604 291 --VMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGF 331 (560)
Q Consensus 291 --~~~lvEiv~g~~t~~e~~~~~~~l~~~lGk~~i~v~d~~G~ 331 (560)
..+..-++.+. +++..+.+..++..-+..+....|..|-
T Consensus 148 ~~g~~t~~via~~--~~~~~~~v~~lf~~~~~~v~~s~Di~gv 188 (341)
T PRK12439 148 AEGYAAAAVLAMP--DQHLATRLSPLFRTRRFRVYTTDDVVGV 188 (341)
T ss_pred HcCCCeEEEEEeC--CHHHHHHHHHHhCCCCEEEEEcCchHHH
Confidence 22323333332 5677777888877766666555665553
No 187
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=98.56 E-value=9.3e-08 Score=87.46 Aligned_cols=97 Identities=21% Similarity=0.241 Sum_probs=78.6
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|++||.||++++|+.-|||.+|||+++|..++..++++|-..++.
T Consensus 188 ML~Tg~Pi~~eeAl~sGlvskvVp~~el~~e~~~i~~~i~~~sra----------------------------------- 232 (287)
T KOG1682|consen 188 MLMTGLPITGEEALISGLVSKVVPAEELDKEIEEITNAIKAKSRA----------------------------------- 232 (287)
T ss_pred HHHhCCCCchHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhhhHHH-----------------------------------
Confidence 689999999999999999999999999999999999988774210
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhccCCCC
Q 008604 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK 133 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~~ 133 (560)
-....|+-.+....++..+++....+-.-.-++-.|.+|++.+|++||.+..
T Consensus 233 -v~slgk~f~y~q~~ms~~ea~~~~~~~m~~n~ql~d~kegiasf~~krp~~~ 284 (287)
T KOG1682|consen 233 -VISLGKEFYYKQLAMSQAEAFSAAQEKMCENFQLGDTKEGIASFFEKRPPNW 284 (287)
T ss_pred -HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcccccchHHHHHHHhccCCCCc
Confidence 2234455566656667677777777777777888899999999999998754
No 188
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=98.50 E-value=1.6e-07 Score=94.98 Aligned_cols=81 Identities=23% Similarity=0.268 Sum_probs=70.6
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|+|||++|+|+||+++||||+|||++++++.+.+++++++..+ |
T Consensus 180 llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~-~----------------------------------- 223 (288)
T PRK08290 180 LLFTGDRLTADEAHRLGMVNRVVPRDELEAETLELARRIAAMP-P----------------------------------- 223 (288)
T ss_pred HHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence 5799999999999999999999999999999999999999852 1
Q ss_pred CcHHHHHHHHHHhhhC-ChHHHHHHHHHHHhHHh-cCHH
Q 008604 81 THPIVCIDVVEAGVVS-GPRAGLQKEAEDFQKLL-RSET 117 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~~-~~~~~l~~E~~~f~~l~-~s~~ 117 (560)
.++..+|+.++..... +++++++.|...+.... ++++
T Consensus 224 ~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (288)
T PRK08290 224 FGLRLTKRAVNQTLDAQGFRAALDAVFDLHQLGHAHNAE 262 (288)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHccccchh
Confidence 3777889999887765 68999999999888877 6776
No 189
>PRK06444 prephenate dehydrogenase; Provisional
Probab=98.45 E-value=3.8e-06 Score=79.63 Aligned_cols=114 Identities=11% Similarity=0.058 Sum_probs=78.1
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (560)
++|+|||+ |.||+-++..|.++|+.|++ .+
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~~-------------------------------------------------~~ 31 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVYI-------------------------------------------------KK 31 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEEE-------------------------------------------------CC
Confidence 37999988 99999999999999999861 37
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccHHHHHhhccCCCcEeecccCCCCCC-C----CeEEEEeCC
Q 008604 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHV-M----PLLEIVRTN 301 (560)
Q Consensus 227 aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~~la~~~~~~~r~~g~hf~~P~~~-~----~lvEiv~g~ 301 (560)
||+||.|+|. ..-.++++++. .+|+.-+|.-. .+.+. ..+|+|.||+..+.. . ..+-+ ..+
T Consensus 32 ~DlVilavPv--~~~~~~i~~~~------~~v~Dv~SvK~--~i~~~---~~~~vg~HPMfGp~~a~~~lf~~~iv-~~~ 97 (197)
T PRK06444 32 ADHAFLSVPI--DAALNYIESYD------NNFVEISSVKW--PFKKY---SGKIVSIHPLFGPMSYNDGVHRTVIF-IND 97 (197)
T ss_pred CCEEEEeCCH--HHHHHHHHHhC------CeEEeccccCH--HHHHh---cCCEEecCCCCCCCcCcccccceEEE-ECC
Confidence 8999999994 34445555543 25655555443 12221 347999999864322 1 22223 356
Q ss_pred CCcHHHHHHHHHHHHhcCCceEEec
Q 008604 302 QTSPQVIVDLLDIGKKIKKTPIVVG 326 (560)
Q Consensus 302 ~t~~e~~~~~~~l~~~lGk~~i~v~ 326 (560)
.++++.++.+.++++ |..++.+.
T Consensus 98 ~~~~~~~~~~~~l~~--G~~~~~~t 120 (197)
T PRK06444 98 ISRDNYLNEINEMFR--GYHFVEMT 120 (197)
T ss_pred CCCHHHHHHHHHHHc--CCEEEEeC
Confidence 778888888888887 66666553
No 190
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.43 E-value=1.3e-05 Score=81.29 Aligned_cols=191 Identities=14% Similarity=0.156 Sum_probs=126.2
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc----
Q 008604 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE---- 222 (560)
Q Consensus 147 ~~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~---- 222 (560)
...|+|||+|+||+.+|.+++++||+|.+|+|+.++.++..+. .+. ...|.+..+++
T Consensus 3 ~~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~----------~~~---------~k~i~~~~sieefV~ 63 (473)
T COG0362 3 KADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAE----------RAK---------GKNIVPAYSIEEFVA 63 (473)
T ss_pred ccceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHh----------Ccc---------CCCccccCcHHHHHH
Confidence 3579999999999999999999999999999999988765431 110 01334444443
Q ss_pred cccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccHHHHH---hhccCCCcEeecccC-------CCCCCC
Q 008604 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIG---ERTYSKDRIVGAHFF-------SPAHVM 292 (560)
Q Consensus 223 ~~~~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~~la---~~~~~~~r~~g~hf~-------~P~~~~ 292 (560)
.++...-|+.+|.-. .....++++|.+++.++-||+...-|...+.+. +....--.|+|+--- +.|+
T Consensus 64 ~Le~PRkI~lMVkAG-~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPS-- 140 (473)
T COG0362 64 SLEKPRKILLMVKAG-TPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPS-- 140 (473)
T ss_pred HhcCCceEEEEEecC-CcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCC--
Confidence 355667777777544 233678889999999999888755444433222 122333456665442 2233
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHHHhcCC----ce--EEec-Cccccc----hhchHH---HHHHHHHHHHHcC--CCHHH
Q 008604 293 PLLEIVRTNQTSPQVIVDLLDIGKKIKK----TP--IVVG-NCTGFA----VNRMFF---PYTQAAFLLVERG--TDLYL 356 (560)
Q Consensus 293 ~lvEiv~g~~t~~e~~~~~~~l~~~lGk----~~--i~v~-d~~G~i----~nri~~---~~~~ea~~l~~~G--~~~~d 356 (560)
++|| .+++..+.+.+++..+.- .| ..++ +..|.. -|-|=. .++.|+..++..+ .+.++
T Consensus 141 ----iMpG--G~~eay~~v~pil~~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~e 214 (473)
T COG0362 141 ----IMPG--GQKEAYELVAPILTKIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEE 214 (473)
T ss_pred ----cCCC--CCHHHHHHHHHHHHHHHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 3444 588999999998877532 12 2233 456643 355543 4679999999765 59999
Q ss_pred HHHHHHhcC
Q 008604 357 IDRAITKFG 365 (560)
Q Consensus 357 ID~a~~~~G 365 (560)
|-.++..|+
T Consensus 215 i~~vF~~WN 223 (473)
T COG0362 215 IAEVFEEWN 223 (473)
T ss_pred HHHHHHHhc
Confidence 999887543
No 191
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.43 E-value=1.1e-06 Score=89.99 Aligned_cols=84 Identities=19% Similarity=0.133 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCcHHHHHHHh---CHHHHHHHHHHHHHHhCC-CCCC
Q 008604 460 KDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSL---GSKYIYSRLEEWSSLYGE-FFKP 535 (560)
Q Consensus 460 ~~i~~r~l~~~~~ea~~~l~egv~~~~~diD~~~~~g~g~p~~~gGp~~~~d~~---G~~~~~~~~~~~~~~~~~-~~~p 535 (560)
..+.||++.++++||+.++++|++ ++++||.++..|+|+++..-||+.++|.. |++........++...++ .+.|
T Consensus 187 G~i~nrl~~a~~~EA~~l~~~g~~-~~~~id~~~~~~~g~~~~~~gp~~~~d~~~~~g~~~~~~k~~~l~~~~~~~~~~~ 265 (308)
T PRK06129 187 GFVLNRLQGALLREAFRLVADGVA-SVDDIDAVIRDGLGLRWSFMGPFETIDLNAPGGVADYAQRYGPMYRRMAAERGQP 265 (308)
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhccCCCccCcCHHHHHhccccccHHHHHHHHHHHHHhhccccCCC
Confidence 369999999999999999999999 89999999999999985445999999987 999999999999888876 7899
Q ss_pred cHHHHHHHH
Q 008604 536 CAFLAERAG 544 (560)
Q Consensus 536 ~~~l~~~~~ 544 (560)
+|+++++++
T Consensus 266 ~~~~~~~~~ 274 (308)
T PRK06129 266 VPWDGELVA 274 (308)
T ss_pred chhhHHHHH
Confidence 999999886
No 192
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=98.43 E-value=1.8e-07 Score=91.57 Aligned_cols=73 Identities=25% Similarity=0.349 Sum_probs=63.4
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|+++|++++|+||+++||||+|||++++.+.+.+++++++..+ +
T Consensus 156 lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~------------------------------------~ 199 (229)
T PRK06213 156 AVINAEMFDPEEAVAAGFLDEVVPPEQLLARAQAAARELAGLN------------------------------------M 199 (229)
T ss_pred HHHcCcccCHHHHHHCCCceeccChHHHHHHHHHHHHHHhcCC------------------------------------H
Confidence 4789999999999999999999999999999999999998842 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHH
Q 008604 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDF 109 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f 109 (560)
.+...+|++++.....+++++++.|...|
T Consensus 200 ~a~~~~K~~l~~~~~~~l~~~~~~~~~~~ 228 (229)
T PRK06213 200 GAHAATKLKVRAAALEAIRAAIEGDAAEF 228 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHhchhhhhhhc
Confidence 47778899998877777888888887765
No 193
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=98.42 E-value=9.9e-06 Score=83.15 Aligned_cols=168 Identities=10% Similarity=0.118 Sum_probs=97.2
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHhhhcccccccCccccc
Q 008604 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKM-TQEKFEKTISLLTGVLDYESFK 225 (560)
Q Consensus 147 ~~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~-~~~~~~~~~~~i~~~~~~~~~~ 225 (560)
.++|+|||+|.||+.+|..|+++|++|+++.++.. +... +.|.. ....-+.....+...++.+.+.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~-----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVR-----------ENGLQVDSVHGDFHLPPVQAYRSAEDMP 71 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHH-----------hCCeEEEeCCCCeeecCceEEcchhhcC
Confidence 46899999999999999999999999999999853 1111 11110 0000000001122233445567
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccHH-HHHhhccCCCcEee-cccC-----CCCC---C-CCe
Q 008604 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN-LIGERTYSKDRIVG-AHFF-----SPAH---V-MPL 294 (560)
Q Consensus 226 ~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~-~la~~~~~~~r~~g-~hf~-----~P~~---~-~~l 294 (560)
.+|+||.|++-.. + .++++.+.+.+.+++++++-.-++... .+...++ ++++++ +.++ .|.. . ..-
T Consensus 72 ~~D~vilavK~~~-~-~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~~~~-~~~v~~g~~~~~a~~~~pg~v~~~~~g~ 148 (313)
T PRK06249 72 PCDWVLVGLKTTA-N-ALLAPLIPQVAAPDAKVLLLQNGLGVEEQLREILP-AEHLLGGLCFICSNRVGPGVIHHLAYGR 148 (313)
T ss_pred CCCEEEEEecCCC-h-HhHHHHHhhhcCCCCEEEEecCCCCcHHHHHHHCC-CCcEEEEeeeEeEecCCCeEEEECCCCc
Confidence 8999999997432 2 467788888888888776666667654 4444443 345443 2222 2321 1 011
Q ss_pred EEEEeCCCCc-----HHHHHHHHHHHHhcCCceEEecCccc
Q 008604 295 LEIVRTNQTS-----PQVIVDLLDIGKKIKKTPIVVGNCTG 330 (560)
Q Consensus 295 vEiv~g~~t~-----~e~~~~~~~l~~~lGk~~i~v~d~~G 330 (560)
+.+-..+..+ .+..+.+..+++..|-......|...
T Consensus 149 ~~iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~ 189 (313)
T PRK06249 149 VNLGYHSGPAADDGITARVEEGAALFRAAGIDSQAMPDLAQ 189 (313)
T ss_pred EEEecCCCCcccchHHHHHHHHHHHHHhCCCCceeCchHHH
Confidence 1111111112 45666777778888876666666444
No 194
>PRK08788 enoyl-CoA hydratase; Validated
Probab=98.41 E-value=8.6e-07 Score=89.26 Aligned_cols=90 Identities=16% Similarity=0.075 Sum_probs=71.9
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|+|||+.++|+||++|||||+|||++++++++.+++++++.. |
T Consensus 185 llltG~~l~A~eA~~~GLV~~vv~~~el~~~a~~~a~~ia~~--~----------------------------------- 227 (287)
T PRK08788 185 LILSGKLYTAEELHDMGLVDVLVEDGQGEAAVRTFIRKSKRK--L----------------------------------- 227 (287)
T ss_pred HHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHhcC--c-----------------------------------
Confidence 579999999999999999999999999999999999999973 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhcCHH-HHHHHHHHHh
Q 008604 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSET-CKSLVHIFFA 127 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~-~~~~~~aF~~ 127 (560)
.++..+|+..+.....++++.++.|...+..++++.+ .++-+..|..
T Consensus 228 ~~~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (287)
T PRK08788 228 NGWRAMLRARRRVNPLSLEELMDITEIWVDAALQLEEKDLRTMERLVR 275 (287)
T ss_pred cHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 2455666666666667888999999888887666554 4566677654
No 195
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=98.40 E-value=3.6e-06 Score=85.86 Aligned_cols=113 Identities=20% Similarity=0.169 Sum_probs=75.4
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (560)
++|+|||+|.||..+|..|+++|++|++++++++..+...+ .|... .+ ......+..+++.+.+.++
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~-----------~g~~~-~~-~~~~~~~~~~~~~~~~~~~ 67 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNE-----------NGLRL-ED-GEITVPVLAADDPAELGPQ 67 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHH-----------cCCcc-cC-CceeecccCCCChhHcCCC
Confidence 37999999999999999999999999999998776654321 12100 00 0000112223444445899
Q ss_pred CEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCccc-HHHHHhhcc
Q 008604 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID-LNLIGERTY 275 (560)
Q Consensus 228 DlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~-i~~la~~~~ 275 (560)
|+||.+++.. + -..+++.+.+.+.++++|++...++. ...+...+.
T Consensus 68 d~vila~k~~-~-~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~~~~ 114 (304)
T PRK06522 68 DLVILAVKAY-Q-LPAALPSLAPLLGPDTPVLFLQNGVGHLEELAAYIG 114 (304)
T ss_pred CEEEEecccc-c-HHHHHHHHhhhcCCCCEEEEecCCCCcHHHHHHhcC
Confidence 9999999843 2 36778888888888877766665665 344454443
No 196
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.40 E-value=5.8e-06 Score=85.39 Aligned_cols=103 Identities=19% Similarity=0.191 Sum_probs=69.9
Q ss_pred EEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC--CCHHHHHhhhcccccccCcc-cc-
Q 008604 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK--MTQEKFEKTISLLTGVLDYE-SF- 224 (560)
Q Consensus 149 ~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~--~~~~~~~~~~~~i~~~~~~~-~~- 224 (560)
+|+|||+|.||..+|..|+++|++|++|+++++.++...+. ..+. +.. ......+..+++++ .+
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~---------~~~~~~~~~---~~~~~~i~~~~~~~~~~~ 69 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTK---------RKNLKYLPT---CHLPDNISVKSAIDEVLS 69 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHc---------CCCcccCCC---CcCCCCeEEeCCHHHHHh
Confidence 69999999999999999999999999999998766543211 0010 000 00012334455554 34
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHh-hcCCCceeeccCCcc
Q 008604 225 KDVDMVIEAIIENVSLKQQIFADLEK-YCPPHCILASNTSTI 265 (560)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~~~~~l~~-~~~~~~ii~sntSsl 265 (560)
.++|+||.+++. ..-.++++++.+ ++.+++.+.+.+.++
T Consensus 70 ~~~Dliiiavks--~~~~~~l~~l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 70 DNATCIILAVPT--QQLRTICQQLQDCHLKKNTPILICSKGI 109 (326)
T ss_pred CCCCEEEEEeCH--HHHHHHHHHHHHhcCCCCCEEEEEEcCe
Confidence 589999999983 345667788887 777887665555555
No 197
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=98.38 E-value=3.3e-06 Score=87.06 Aligned_cols=107 Identities=21% Similarity=0.207 Sum_probs=73.1
Q ss_pred EEEEEcCccchHHHHHHHHhCC--------CcEEEEeC-----CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccc
Q 008604 149 KVAILGGGLMGSGIATALILSN--------YPVILKEV-----NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLL 215 (560)
Q Consensus 149 ~V~VIG~G~mG~~iA~~l~~~G--------~~V~l~d~-----~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i 215 (560)
||+|||+|.+|.++|..++.+| ++|++|.+ +++-.+ ... . ..+....-+. -...+++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~-~in---~----~~~n~~ylpg--i~Lp~~i 70 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTE-IIN---T----THENVKYLPG--IKLPANL 70 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHH-HHH---h----cCCCccccCC--CcCCCCe
Confidence 5899999999999999999999 99999998 333222 111 1 1000000000 0112356
Q ss_pred ccccCcc-cccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccH
Q 008604 216 TGVLDYE-SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL 267 (560)
Q Consensus 216 ~~~~~~~-~~~~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i 267 (560)
..++|++ .+.+||+||.+|| ...-+.++.++.++++++.+++|.+-++..
T Consensus 71 ~at~dl~eal~~ADiIIlAVP--s~~i~~vl~~l~~~l~~~~~iVs~tKGie~ 121 (342)
T TIGR03376 71 VAVPDLVEAAKGADILVFVIP--HQFLEGICKQLKGHVKPNARAISCIKGLEV 121 (342)
T ss_pred EEECCHHHHHhcCCEEEEECC--hHHHHHHHHHHHhhcCCCCEEEEEeCCccc
Confidence 6777874 5799999999999 456678888999888888877776555443
No 198
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=98.37 E-value=1.2e-06 Score=90.08 Aligned_cols=99 Identities=18% Similarity=0.077 Sum_probs=76.3
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (560)
++|+|||+|.||.++|..+...|++|++||++++..... +....++ +.+++
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~----------------------------~~~~~~l~ell~~ 198 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF----------------------------LTYKDSVKEAIKD 198 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh----------------------------hhccCCHHHHHhc
Confidence 489999999999999999999999999999997542110 0112334 45789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCc---ccHHHHHhhcc
Q 008604 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY 275 (560)
Q Consensus 227 aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSs---l~i~~la~~~~ 275 (560)
||+|+.++|...+.+..+.+++.+.++++++|+ |+|- +.-..+.+++.
T Consensus 199 aDiVil~lP~t~~t~~li~~~~l~~mk~gavlI-N~aRG~~vd~~aL~~aL~ 249 (330)
T PRK12480 199 ADIISLHVPANKESYHLFDKAMFDHVKKGAILV-NAARGAVINTPDLIAAVN 249 (330)
T ss_pred CCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEE-EcCCccccCHHHHHHHHH
Confidence 999999999998888888888888999999886 5553 33446666664
No 199
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=98.34 E-value=6.4e-07 Score=93.95 Aligned_cols=88 Identities=14% Similarity=0.271 Sum_probs=72.4
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|+|||+.++|++|+++||||++||++++ +++.+++.+++..+ |
T Consensus 196 L~LTG~~i~A~eA~~~GLv~~vVp~~~l-~~~~~~~~~i~~~~-p----------------------------------- 238 (401)
T PLN02157 196 LGLTGLKLSGAEMLACGLATHYIRSEEI-PVMEEQLKKLLTDD-P----------------------------------- 238 (401)
T ss_pred HHHcCCcCCHHHHHHcCCceEEeCHhHH-HHHHHHHHHHHcCC-H-----------------------------------
Confidence 5789999999999999999999999998 67778888887742 2
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhcCHHHHHHHHHHH
Q 008604 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFF 126 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~ 126 (560)
.++..+|+.+... ..+...++..|...+..++.+++.++.+.+|.
T Consensus 239 ~av~~~k~~~~~~-~~~~~~~l~~~~~~i~~~f~~~d~~ei~~al~ 283 (401)
T PLN02157 239 SVVESCLEKCAEV-AHPEKTGVIRRIDLLEKCFSHDTVEEIIDSLE 283 (401)
T ss_pred HHHHHHHHHHhcc-cCCcchhHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 2566777777654 24456778888999999999999999999994
No 200
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=98.32 E-value=4.3e-06 Score=85.42 Aligned_cols=164 Identities=15% Similarity=0.141 Sum_probs=91.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHhhhcccccccCccc-cc
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKM-TQEKFEKTISLLTGVLDYES-FK 225 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~-~~~~~~~~~~~i~~~~~~~~-~~ 225 (560)
++|+|||+|.||..+|..|+++|++|+++++ .+.++... +.|.. ....-+.. -.....++.+. ..
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~-----------~~g~~~~~~~~~~~-~~~~~~~~~~~~~~ 67 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALR-----------ERGLVIRSDHGDAV-VPGPVITDPEELTG 67 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHH-----------hCCeEEEeCCCeEE-ecceeecCHHHccC
Confidence 4799999999999999999999999999999 66554322 11110 00000000 01112334433 48
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCccc-HHHHHhhccCCCcEe-ecccC-----CCCCC--CCeEE
Q 008604 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID-LNLIGERTYSKDRIV-GAHFF-----SPAHV--MPLLE 296 (560)
Q Consensus 226 ~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~-i~~la~~~~~~~r~~-g~hf~-----~P~~~--~~lvE 296 (560)
++|+||.|++.. .-..+++++.+.+.++++|.+..-++. .+.+...++. .+++ |+.++ .|-.. ...-.
T Consensus 68 ~~d~vilavk~~--~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~~~~~-~~v~~g~~~~~~~~~~~g~v~~~~~~~ 144 (305)
T PRK12921 68 PFDLVILAVKAY--QLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEPYFGR-ERVLGGVVFISAQLNGDGVVVQRADHR 144 (305)
T ss_pred CCCEEEEEeccc--CHHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHHhCCc-ccEEEEEEEEEEEECCCeEEEEcCCCc
Confidence 899999999853 235567788888888887765544565 3445444432 2444 33332 22110 00001
Q ss_pred EEeC--CCCcHHHHHHHHHHHHhcCCceEEecC
Q 008604 297 IVRT--NQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (560)
Q Consensus 297 iv~g--~~t~~e~~~~~~~l~~~lGk~~i~v~d 327 (560)
+.-| +....+..+.+...+...|.......|
T Consensus 145 ~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~d 177 (305)
T PRK12921 145 LTFGEIPGQRSERTRAVRDALAGARLEVVLSEN 177 (305)
T ss_pred EEEcCCCCCcCHHHHHHHHHHHhCCCCceecHH
Confidence 1222 122345555666667766655444444
No 201
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=98.32 E-value=8.1e-07 Score=90.59 Aligned_cols=42 Identities=21% Similarity=0.343 Sum_probs=40.1
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhcc
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~ 42 (560)
|+|||++|+|+||+++||||+|||++++++++.++|++++..
T Consensus 188 llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~la~~ia~~ 229 (302)
T PRK08272 188 LLFTGDCITGAQAAEWGLAVEAVPPEELDERTERLVERIAAV 229 (302)
T ss_pred HHHcCCccCHHHHHHcCCCceecCHHHHHHHHHHHHHHHHcC
Confidence 579999999999999999999999999999999999999985
No 202
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=98.32 E-value=3.9e-06 Score=75.49 Aligned_cols=98 Identities=28% Similarity=0.376 Sum_probs=65.6
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc
Q 008604 148 KKVAILGG-GLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 224 (560)
+||+|||+ |.+|..+|..+...|+ +++++|++++.++.-...++.... ..+ ........+++++
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~---~~~----------~~~~i~~~~~~~~ 67 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASA---PLP----------SPVRITSGDYEAL 67 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHH---GST----------EEEEEEESSGGGG
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhh---hcc----------ccccccccccccc
Confidence 48999999 9999999999999864 899999998865543322221110 000 0111223578899
Q ss_pred cCCCEEEEecc--------------CChHHHHHHHHHHHhhcCCCceee
Q 008604 225 KDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILA 259 (560)
Q Consensus 225 ~~aDlVIeav~--------------e~~~~k~~~~~~l~~~~~~~~ii~ 259 (560)
++||+||.+.- .+..+-+++..++.+++ ++++++
T Consensus 68 ~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~-p~~~vi 115 (141)
T PF00056_consen 68 KDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYA-PDAIVI 115 (141)
T ss_dssp TTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHS-TTSEEE
T ss_pred ccccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhC-CccEEE
Confidence 99999998872 13335666667788888 455444
No 203
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=98.31 E-value=1.8e-05 Score=75.53 Aligned_cols=146 Identities=16% Similarity=0.177 Sum_probs=100.7
Q ss_pred hHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc-ccCcccccCCCEEEEeccCC
Q 008604 159 GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLDYESFKDVDMVIEAIIEN 237 (560)
Q Consensus 159 G~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~~~aDlVIeav~e~ 237 (560)
|+.||..++.+||+|++.|.|.+-.+.. .+++.-+.| +.. ++|.++++.+.+.|...|-.
T Consensus 33 Ga~mAiefAeAGHDVVLaePn~d~~dd~------~w~~vedAG-------------V~vv~dD~eaa~~~Ei~VLFTPFG 93 (340)
T COG4007 33 GARMAIEFAEAGHDVVLAEPNRDIMDDE------HWKRVEDAG-------------VEVVSDDAEAAEHGEIHVLFTPFG 93 (340)
T ss_pred chHHHHHHHHcCCcEEeecCCccccCHH------HHHHHHhcC-------------cEEecCchhhhhcceEEEEecccc
Confidence 7899999999999999999987765432 122223333 223 34568899999999988854
Q ss_pred hHHHHHHHHHHHhhcCCCceeeccCCcccHHHH----HhhccCCCcEeecccCCCCCC-----CCeEEEEeCC------C
Q 008604 238 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLI----GERTYSKDRIVGAHFFSPAHV-----MPLLEIVRTN------Q 302 (560)
Q Consensus 238 ~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~~l----a~~~~~~~r~~g~hf~~P~~~-----~~lvEiv~g~------~ 302 (560)
. ..-.+.++|.++++++++|+ ||.+.|+-.+ ...+..+.+-+|...|.|... .... ++.|. -
T Consensus 94 k-~T~~Iarei~~hvpEgAVic-nTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~h~~y-viagr~t~g~el 170 (340)
T COG4007 94 K-ATFGIAREILEHVPEGAVIC-NTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQHGHY-VIAGRSTEGKEL 170 (340)
T ss_pred h-hhHHHHHHHHhhCcCCcEec-ccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCCCCCCceE-EEeccCCCceee
Confidence 2 33466788999999999986 6666665433 334455656677766665421 1122 33322 2
Q ss_pred CcHHHHHHHHHHHHhcCCceEEec
Q 008604 303 TSPQVIVDLLDIGKKIKKTPIVVG 326 (560)
Q Consensus 303 t~~e~~~~~~~l~~~lGk~~i~v~ 326 (560)
.+++.++++..+++..||.++++.
T Consensus 171 ATeEQi~r~velaes~Gk~~yv~p 194 (340)
T COG4007 171 ATEEQIERCVELAESTGKEVYVLP 194 (340)
T ss_pred ccHHHHHHHHHHHHhcCCceEecC
Confidence 368899999999999999999885
No 204
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.28 E-value=4.8e-06 Score=86.49 Aligned_cols=174 Identities=14% Similarity=0.045 Sum_probs=99.7
Q ss_pred ceEEEEEcCccchHHHHHHHHhCC-------CcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc
Q 008604 147 VKKVAILGGGLMGSGIATALILSN-------YPVILKEVNEKF-LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV 218 (560)
Q Consensus 147 ~~~V~VIG~G~mG~~iA~~l~~~G-------~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~ 218 (560)
.++|+|||+|.||.++|..++.+| ++|.+|.++++. -+...+.|... ......-+. -..-+++..+
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~----~~N~~ylp~--~~Lp~ni~~t 84 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTK----HENVKYLPG--IKLPDNIVAV 84 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhc----CCCcccCCC--CcCCCceEEe
Confidence 468999999999999999999998 899999999762 01111111110 000000000 0122466677
Q ss_pred cCcc-cccCCCEEEEeccCChHHHHHHHHHHHh--hcCCCceeeccCCccc--------HHHHHh-hccCCCcEeec-cc
Q 008604 219 LDYE-SFKDVDMVIEAIIENVSLKQQIFADLEK--YCPPHCILASNTSTID--------LNLIGE-RTYSKDRIVGA-HF 285 (560)
Q Consensus 219 ~~~~-~~~~aDlVIeav~e~~~~k~~~~~~l~~--~~~~~~ii~sntSsl~--------i~~la~-~~~~~~r~~g~-hf 285 (560)
+|++ .+.+||+||.+|| ...-+++++++.+ .++++++++|.+-++. ++++.. .+..+--++.. .|
T Consensus 85 sdl~eav~~aDiIvlAVP--sq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~~~~~LsGPs~ 162 (365)
T PTZ00345 85 SDLKEAVEDADLLIFVIP--HQFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGIPCCALSGANV 162 (365)
T ss_pred cCHHHHHhcCCEEEEEcC--hHHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCCCeEEEECCCH
Confidence 7774 6899999999999 5567888888887 7777777766544433 444333 23222111111 11
Q ss_pred CCCC-CCCCeEEEEeCCCCcHHHHHHHHHHHHhcCCceEEecCccc
Q 008604 286 FSPA-HVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG 330 (560)
Q Consensus 286 ~~P~-~~~~lvEiv~g~~t~~e~~~~~~~l~~~lGk~~i~v~d~~G 330 (560)
..-+ ...|..-++.+ .+.+....++.++..--..+....|..|
T Consensus 163 A~Eva~~~pt~~vias--~~~~~a~~~~~lf~~~~frvy~s~Dv~G 206 (365)
T PTZ00345 163 ANDVAREEFSEATIGC--EDKDDALIWQRLFDRPYFKINCVPDVIG 206 (365)
T ss_pred HHHHHcCCCcEEEEEe--CCHHHHHHHHHHhCCCcEEEEEcCCccc
Confidence 1101 12333334444 2677777777777654444444445444
No 205
>PRK13243 glyoxylate reductase; Reviewed
Probab=98.24 E-value=5.8e-06 Score=85.36 Aligned_cols=101 Identities=18% Similarity=0.151 Sum_probs=75.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (560)
++|+|||.|.||..+|..+...|++|.+||++...... ...+. . ..++ +.+++
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~------------~~~~~-------------~-~~~l~ell~~ 204 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEAE------------KELGA-------------E-YRPLEELLRE 204 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhhH------------HHcCC-------------E-ecCHHHHHhh
Confidence 69999999999999999999999999999998643210 01110 1 1233 45789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccH---HHHHhhcc
Q 008604 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL---NLIGERTY 275 (560)
Q Consensus 227 aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i---~~la~~~~ 275 (560)
||+|+.++|-..+.+.-+-++..+.++++++++ |+|.-.+ ..+.+.+.
T Consensus 205 aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lI-N~aRg~~vd~~aL~~aL~ 255 (333)
T PRK13243 205 SDFVSLHVPLTKETYHMINEERLKLMKPTAILV-NTARGKVVDTKALVKALK 255 (333)
T ss_pred CCEEEEeCCCChHHhhccCHHHHhcCCCCeEEE-ECcCchhcCHHHHHHHHH
Confidence 999999999888888777778888899999875 6765443 45555553
No 206
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=98.20 E-value=3.8e-06 Score=85.90 Aligned_cols=98 Identities=23% Similarity=0.297 Sum_probs=66.6
Q ss_pred eEEEEEcCccchHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 008604 148 KKVAILGGGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (560)
+||+|||+|.+|+.+|..++..| ++|+++|++++.++.....+.... ...+. ...+. +.+++++.
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~---~~~~~---------~~~i~-~~~~~~l~ 67 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDAL---AFLPS---------PVKIK-AGDYSDCK 67 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHh---hccCC---------CeEEE-cCCHHHhC
Confidence 48999999999999999999999 589999999887654433322211 00000 00122 35667899
Q ss_pred CCCEEEEeccC--------------ChHHHHHHHHHHHhhcCCCceee
Q 008604 226 DVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILA 259 (560)
Q Consensus 226 ~aDlVIeav~e--------------~~~~k~~~~~~l~~~~~~~~ii~ 259 (560)
+||+||.++.. +..+-+++...+.++++ ++++.
T Consensus 68 ~aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~-~~~vi 114 (306)
T cd05291 68 DADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGF-DGIFL 114 (306)
T ss_pred CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEE
Confidence 99999999842 33456667777888776 55443
No 207
>PRK15076 alpha-galactosidase; Provisional
Probab=98.18 E-value=6.9e-06 Score=87.54 Aligned_cols=76 Identities=24% Similarity=0.281 Sum_probs=54.2
Q ss_pred eEEEEEcCccchHHHHH--HH----HhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC-
Q 008604 148 KKVAILGGGLMGSGIAT--AL----ILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD- 220 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~--~l----~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~- 220 (560)
+||+|||+|.||...+. .+ ...|.+|+++|+++++++.+...++..+... + ...+++.++|
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~---~---------~~~~i~~ttD~ 69 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESL---G---------ASAKITATTDR 69 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhc---C---------CCeEEEEECCH
Confidence 68999999999965554 33 3347799999999998876554444333222 1 1135677788
Q ss_pred cccccCCCEEEEecc
Q 008604 221 YESFKDVDMVIEAII 235 (560)
Q Consensus 221 ~~~~~~aDlVIeav~ 235 (560)
.+++++||+||+++-
T Consensus 70 ~eal~dADfVv~ti~ 84 (431)
T PRK15076 70 REALQGADYVINAIQ 84 (431)
T ss_pred HHHhCCCCEEeEeee
Confidence 588999999999983
No 208
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=98.15 E-value=6.6e-06 Score=82.78 Aligned_cols=87 Identities=21% Similarity=0.155 Sum_probs=62.8
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (560)
++|+|||.|.||.++|..|...|++|+++|+.....+.+. ..|. ...+-.+.++.|
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~-----------~~G~-------------~v~sl~Eaak~A 72 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAK-----------ADGF-------------EVMSVSEAVRTA 72 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHH-----------HcCC-------------EECCHHHHHhcC
Confidence 6899999999999999999999999999987633322111 1121 111112568899
Q ss_pred CEEEEeccCChHHHHHHHHHHHhhcCCCceee
Q 008604 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILA 259 (560)
Q Consensus 228 DlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~ 259 (560)
|+|+.++|. .+.+..+..++.+.++++++++
T Consensus 73 DVV~llLPd-~~t~~V~~~eil~~MK~GaiL~ 103 (335)
T PRK13403 73 QVVQMLLPD-EQQAHVYKAEVEENLREGQMLL 103 (335)
T ss_pred CEEEEeCCC-hHHHHHHHHHHHhcCCCCCEEE
Confidence 999999996 4444433457888899999775
No 209
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=98.14 E-value=1.2e-05 Score=82.02 Aligned_cols=112 Identities=17% Similarity=0.159 Sum_probs=79.8
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (560)
++|+|||.|.||..+|..+...|++|+.||++.+..... . ......++ +.+++
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~------------~--------------~~~~~~~l~e~l~~ 190 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGV------------Q--------------SFAGREELSAFLSQ 190 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCc------------e--------------eecccccHHHHHhc
Confidence 689999999999999999999999999999875432100 0 00011233 45789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCc---ccHHHHHhhcc-CCCcEeecccC
Q 008604 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY-SKDRIVGAHFF 286 (560)
Q Consensus 227 aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSs---l~i~~la~~~~-~~~r~~g~hf~ 286 (560)
||+|+.++|.+.+.+.-+-++..+.++++++++ |++- +.-..+.+++. ..-+-.++--|
T Consensus 191 aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lI-N~aRG~vVde~aL~~aL~~g~i~gaalDVf 253 (312)
T PRK15469 191 TRVLINLLPNTPETVGIINQQLLEQLPDGAYLL-NLARGVHVVEDDLLAALDSGKVKGAMLDVF 253 (312)
T ss_pred CCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEE-ECCCccccCHHHHHHHHhcCCeeeEEecCC
Confidence 999999999999988888778888899999775 7764 33456666664 23333444434
No 210
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.14 E-value=9.2e-06 Score=82.95 Aligned_cols=98 Identities=22% Similarity=0.319 Sum_probs=66.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 008604 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (560)
.||+|||+|.+|+.+|..++..|. +++++|++++.++.....+.... ... ....+..+.++++++
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~------~~~-------~~~~v~~~~dy~~~~ 70 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGS------AFL-------KNPKIEADKDYSVTA 70 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhh------ccC-------CCCEEEECCCHHHhC
Confidence 499999999999999999998876 79999999876543222211110 000 012455567889999
Q ss_pred CCCEEEEecc--------------CChHHHHHHHHHHHhhcCCCcee
Q 008604 226 DVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCIL 258 (560)
Q Consensus 226 ~aDlVIeav~--------------e~~~~k~~~~~~l~~~~~~~~ii 258 (560)
+||+||.+.- .+..+-+++.+.+.++++...++
T Consensus 71 ~adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vi 117 (312)
T cd05293 71 NSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILL 117 (312)
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEE
Confidence 9999998662 12334566667788886555443
No 211
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=98.11 E-value=9.4e-07 Score=88.85 Aligned_cols=77 Identities=18% Similarity=0.207 Sum_probs=69.1
Q ss_pred cccchhchHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCc---cHHHHHHHhhhHHHHHHHHHHHHhCCCCCcccch
Q 008604 329 TGFAVNRMFFPYTQAAFLLVERGT--DLYLIDRAIT-KFGMPM---GPFRLADLVGFGVAIATGMQFIENFPERTYKSMI 402 (560)
Q Consensus 329 ~G~i~nri~~~~~~ea~~l~~~G~--~~~dID~a~~-~~G~~~---GPf~~~D~~Gld~~~~~~~~l~~~~~~~~~~~~~ 402 (560)
+--++++++.+++||++++++||+ ++.++|.+.- |+|||. |||.|.|..|++.++..++.|.. +.|+.+
T Consensus 293 ~ed~v~~~~~p~VnEal~~l~EGi~~~~~~~Di~~v~G~gfp~~~GGp~~~~d~~G~~ki~~~l~~~~~-----f~P~~~ 367 (380)
T KOG1683|consen 293 DEDFVEFLLSPFVNEALRCLLEGLKASPSDGDIASVFGLGFPPFRGGPMRFVDLYGADKIVSRLQKWSS-----FEPCQL 367 (380)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhcCccccceeeeeccCCCCcCCCceeeeeccChHHHHHHHHHHhc-----CCHHHH
Confidence 445899999999999999999997 9999999998 999994 99999999999999999988765 678888
Q ss_pred HHHHHHCC
Q 008604 403 IPIMQEDK 410 (560)
Q Consensus 403 l~~~v~~G 410 (560)
+.++..+|
T Consensus 368 l~~~a~~~ 375 (380)
T KOG1683|consen 368 LKDHAKSG 375 (380)
T ss_pred HHHHHhhh
Confidence 98888774
No 212
>PRK07574 formate dehydrogenase; Provisional
Probab=98.10 E-value=2.8e-05 Score=81.36 Aligned_cols=103 Identities=17% Similarity=0.102 Sum_probs=75.1
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (560)
++|+|||.|.||..+|..+...|++|+.||++....+.. ...| +....++ +.+++
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~-----------~~~g-------------~~~~~~l~ell~~ 248 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVE-----------QELG-------------LTYHVSFDSLVSV 248 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhH-----------hhcC-------------ceecCCHHHHhhc
Confidence 689999999999999999999999999999985321110 0111 1112234 45789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccH---HHHHhhcc
Q 008604 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL---NLIGERTY 275 (560)
Q Consensus 227 aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i---~~la~~~~ 275 (560)
||+|+.++|-+.+.+.-+=++..+.++++++|+ |+|.-.+ ..+.+++.
T Consensus 249 aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lI-N~aRG~iVDe~AL~~AL~ 299 (385)
T PRK07574 249 CDVVTIHCPLHPETEHLFDADVLSRMKRGSYLV-NTARGKIVDRDAVVRALE 299 (385)
T ss_pred CCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEE-ECCCCchhhHHHHHHHHH
Confidence 999999999988887777677888899999875 7765443 35555553
No 213
>PLN03139 formate dehydrogenase; Provisional
Probab=98.09 E-value=3.3e-05 Score=80.77 Aligned_cols=129 Identities=14% Similarity=0.112 Sum_probs=86.7
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (560)
++|+|||.|.||..+|..+...|.+|+.||++....+.. .+.| +....++ +.+++
T Consensus 200 ktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~-----------~~~g-------------~~~~~~l~ell~~ 255 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELE-----------KETG-------------AKFEEDLDAMLPK 255 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhH-----------hhcC-------------ceecCCHHHHHhh
Confidence 689999999999999999999999999999875321110 0111 1122344 34689
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccH---HHHHhhcc-CCCcEeecccC--CCC------CCCCe
Q 008604 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL---NLIGERTY-SKDRIVGAHFF--SPA------HVMPL 294 (560)
Q Consensus 227 aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i---~~la~~~~-~~~r~~g~hf~--~P~------~~~~l 294 (560)
||+|+.++|.+.+.+.-+-+++.+.++++++|+ |++.-.+ ..+.+.+. ..-+-.++--| .|. +.++-
T Consensus 256 sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lI-N~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp~d~pL~~~pN 334 (386)
T PLN03139 256 CDVVVINTPLTEKTRGMFNKERIAKMKKGVLIV-NNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRYMPN 334 (386)
T ss_pred CCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEE-ECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCCCCCChhhcCCC
Confidence 999999999988888877778888999999875 7765443 35655553 22333344433 232 23455
Q ss_pred EEEEeCC
Q 008604 295 LEIVRTN 301 (560)
Q Consensus 295 vEiv~g~ 301 (560)
+-+.|+-
T Consensus 335 vilTPHi 341 (386)
T PLN03139 335 HAMTPHI 341 (386)
T ss_pred eEEcccc
Confidence 5566654
No 214
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=98.06 E-value=7.5e-06 Score=76.61 Aligned_cols=96 Identities=19% Similarity=0.100 Sum_probs=83.6
Q ss_pred CcccCCCCChHHHHhCCCcceecCC-cchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAP-NQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPN 79 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~-~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (560)
+.+|+|.++|.||++.|||.+|+|. +++++.+..+|..|+.++ |
T Consensus 191 lafTar~f~a~EAl~~GLvSrvf~dk~~ll~~~l~mA~~Ia~KS-p---------------------------------- 235 (292)
T KOG1681|consen 191 LAFTARKFSADEALDSGLVSRVFPDKEELLNGALPMAELIASKS-P---------------------------------- 235 (292)
T ss_pred HHhhhhhcchhhhhhcCcchhhcCCHHHHHhhhHHHHHHhccCC-c----------------------------------
Confidence 3589999999999999999999985 789999999999999853 3
Q ss_pred CCcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhccCCC
Q 008604 80 LTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS 132 (560)
Q Consensus 80 ~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr~~~ 132 (560)
.|+.-+|+.+..+.+++.+++|..-+..-...+-|+|....+.+-++|+++.
T Consensus 236 -vaVqgTK~~L~ysrehsv~~sLnyvatwNms~L~s~Dl~~av~a~m~k~k~~ 287 (292)
T KOG1681|consen 236 -VAVQGTKENLLYSREHSVEESLNYVATWNMSMLLSDDLVKAVMAQMEKLKTV 287 (292)
T ss_pred -eeeechHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 4888899999999999999999998888777888999998888888866543
No 215
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.06 E-value=1.7e-05 Score=81.02 Aligned_cols=97 Identities=28% Similarity=0.405 Sum_probs=66.4
Q ss_pred eEEEEEcCccchHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 008604 148 KKVAILGGGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (560)
+||+|||+|.+|..+|..++.+| .+|+++|++++.++.....+.. ...... . ..+. ++++++++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~-------~~~~~~----~--~~i~-~~d~~~l~ 66 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAH-------GTPFVK----P--VRIY-AGDYADCK 66 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHc-------cccccC----C--eEEe-eCCHHHhC
Confidence 37999999999999999999999 5899999998876522111111 000000 0 1222 46788899
Q ss_pred CCCEEEEeccC--------------ChHHHHHHHHHHHhhcCCCcee
Q 008604 226 DVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCIL 258 (560)
Q Consensus 226 ~aDlVIeav~e--------------~~~~k~~~~~~l~~~~~~~~ii 258 (560)
+||+||.+++. +..+-+++.+++.++.+.+.++
T Consensus 67 ~aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giii 113 (308)
T cd05292 67 GADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILL 113 (308)
T ss_pred CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 99999999853 3345666777788887665544
No 216
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.05 E-value=8.4e-06 Score=74.40 Aligned_cols=106 Identities=18% Similarity=0.166 Sum_probs=65.1
Q ss_pred eEEEEEcCccchHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 008604 148 KKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (560)
++|+|||+|.||.+++..+++.| ++|+++|++++..++..+.+.. .. . ... ..+. +.+.
T Consensus 20 ~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~-------~~-~----------~~~-~~~~~~~~~ 80 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGE-------LG-I----------AIA-YLDLEELLA 80 (155)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhh-------cc-c----------cee-ecchhhccc
Confidence 68999999999999999999996 8899999998877654322110 00 0 001 1222 3378
Q ss_pred CCCEEEEeccCChH-HHHHHHHHHHhhcCCCceeeccCCcccHHHHHhhc
Q 008604 226 DVDMVIEAIIENVS-LKQQIFADLEKYCPPHCILASNTSTIDLNLIGERT 274 (560)
Q Consensus 226 ~aDlVIeav~e~~~-~k~~~~~~l~~~~~~~~ii~sntSsl~i~~la~~~ 274 (560)
++|+||.|+|.... +....+. ...+++++++...+|....+++.+.+
T Consensus 81 ~~Dvvi~~~~~~~~~~~~~~~~--~~~~~~~~~v~D~~~~~~~~~l~~~~ 128 (155)
T cd01065 81 EADLIINTTPVGMKPGDELPLP--PSLLKPGGVVYDVVYNPLETPLLKEA 128 (155)
T ss_pred cCCEEEeCcCCCCCCCCCCCCC--HHHcCCCCEEEEcCcCCCCCHHHHHH
Confidence 99999999987653 1111111 12356777775443332223444433
No 217
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.05 E-value=1.4e-05 Score=72.17 Aligned_cols=86 Identities=21% Similarity=0.255 Sum_probs=59.6
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK-FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (560)
++|+|||.|..|.+.|++|..+|++|++-.+..+ ..+++ .+.|. .+.+-.++++.
T Consensus 5 k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A-----------~~~Gf-------------~v~~~~eAv~~ 60 (165)
T PF07991_consen 5 KTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKA-----------KADGF-------------EVMSVAEAVKK 60 (165)
T ss_dssp SEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHH-----------HHTT--------------ECCEHHHHHHC
T ss_pred CEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHH-----------HHCCC-------------eeccHHHHHhh
Confidence 6899999999999999999999999999998766 33333 23342 22233367899
Q ss_pred CCEEEEeccCChHHHHHHH-HHHHhhcCCCceee
Q 008604 227 VDMVIEAIIENVSLKQQIF-ADLEKYCPPHCILA 259 (560)
Q Consensus 227 aDlVIeav~e~~~~k~~~~-~~l~~~~~~~~ii~ 259 (560)
+|+|+..+|+ ++-.++| +++.+.++++.++.
T Consensus 61 aDvV~~L~PD--~~q~~vy~~~I~p~l~~G~~L~ 92 (165)
T PF07991_consen 61 ADVVMLLLPD--EVQPEVYEEEIAPNLKPGATLV 92 (165)
T ss_dssp -SEEEE-S-H--HHHHHHHHHHHHHHS-TT-EEE
T ss_pred CCEEEEeCCh--HHHHHHHHHHHHhhCCCCCEEE
Confidence 9999999994 4556777 78999999999875
No 218
>PRK06436 glycerate dehydrogenase; Provisional
Probab=98.04 E-value=2.5e-05 Score=79.39 Aligned_cols=123 Identities=14% Similarity=0.086 Sum_probs=84.0
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (560)
++|+|||.|.||..+|..+...|++|+.||++... .+. . ....++ +.+++
T Consensus 123 ktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~-----------------~~~-~-----------~~~~~l~ell~~ 173 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN-----------------DGI-S-----------SIYMEPEDIMKK 173 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc-----------------cCc-c-----------cccCCHHHHHhh
Confidence 79999999999999999888789999999987421 010 0 001233 34689
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCccc---HHHHHhhccC-CCcEeecccC--CCC---CCCCeEEE
Q 008604 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID---LNLIGERTYS-KDRIVGAHFF--SPA---HVMPLLEI 297 (560)
Q Consensus 227 aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~---i~~la~~~~~-~~r~~g~hf~--~P~---~~~~lvEi 297 (560)
||+|+.++|.+.+.+.-+-++..+.++++++++ |+|.-+ -..+.+.+.. .....++--| .|. +..+-+-+
T Consensus 174 aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lI-N~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~~~~~~nvii 252 (303)
T PRK06436 174 SDFVLISLPLTDETRGMINSKMLSLFRKGLAII-NVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITETNPDNVIL 252 (303)
T ss_pred CCEEEECCCCCchhhcCcCHHHHhcCCCCeEEE-ECCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCccCCCCCEEE
Confidence 999999999988887777677777899999875 776544 3456565542 3344444444 232 23455666
Q ss_pred EeC
Q 008604 298 VRT 300 (560)
Q Consensus 298 v~g 300 (560)
.|+
T Consensus 253 TPH 255 (303)
T PRK06436 253 SPH 255 (303)
T ss_pred CCc
Confidence 666
No 219
>PRK05869 enoyl-CoA hydratase; Validated
Probab=98.02 E-value=4.9e-06 Score=80.88 Aligned_cols=42 Identities=33% Similarity=0.646 Sum_probs=40.0
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhcc
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~ 42 (560)
|++||++++|++|+++||||+|+|++++++++.++|++++..
T Consensus 163 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~ 204 (222)
T PRK05869 163 LVFSGRFFDAEEALALGLIDEMVAPDDVYDAAAAWARRFLDG 204 (222)
T ss_pred HHHcCCCcCHHHHHHCCCCCEeeCchHHHHHHHHHHHHHHcC
Confidence 578999999999999999999999999999999999999985
No 220
>PLN02602 lactate dehydrogenase
Probab=98.02 E-value=1.4e-05 Score=82.68 Aligned_cols=95 Identities=24% Similarity=0.388 Sum_probs=65.5
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhh--cccccccCccc
Q 008604 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTI--SLLTGVLDYES 223 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~--~~i~~~~~~~~ 223 (560)
.||+|||+|.+|+.+|..++..|. +++++|++++.++...-.+... ...+ ..+..+.++++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~---------------~~~~~~~~i~~~~dy~~ 102 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHA---------------AAFLPRTKILASTDYAV 102 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhh---------------hhcCCCCEEEeCCCHHH
Confidence 599999999999999999998886 7999999987654332222111 1111 13443457888
Q ss_pred ccCCCEEEEecc--------------CChHHHHHHHHHHHhhcCCCce
Q 008604 224 FKDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCI 257 (560)
Q Consensus 224 ~~~aDlVIeav~--------------e~~~~k~~~~~~l~~~~~~~~i 257 (560)
+++||+||.+.- .+..+-+++...+.++++...+
T Consensus 103 ~~daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~iv 150 (350)
T PLN02602 103 TAGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTIL 150 (350)
T ss_pred hCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEE
Confidence 999999999862 1223455666778887765543
No 221
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=97.99 E-value=1.8e-05 Score=80.58 Aligned_cols=96 Identities=24% Similarity=0.366 Sum_probs=66.4
Q ss_pred EEEEcCccchHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 008604 150 VAILGGGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (560)
Q Consensus 150 V~VIG~G~mG~~iA~~l~~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (560)
|+|||+|.+|+.+|..++..| .+++++|++++.++.....+....... ...++..+++++++++|
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~-------------~~~~i~~~~~~~~l~~a 67 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFL-------------ATGTIVRGGDYADAADA 67 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhcccc-------------CCCeEEECCCHHHhCCC
Confidence 689999999999999999998 689999999887654433322211000 01133434568899999
Q ss_pred CEEEEeccC--------------ChHHHHHHHHHHHhhcCCCceee
Q 008604 228 DMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILA 259 (560)
Q Consensus 228 DlVIeav~e--------------~~~~k~~~~~~l~~~~~~~~ii~ 259 (560)
|+||.++.- +..+-+++..++.+++ ++++++
T Consensus 68 DiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~vi 112 (300)
T cd00300 68 DIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYG-PDAIIL 112 (300)
T ss_pred CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEE
Confidence 999998831 3345666777888888 455443
No 222
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=97.99 E-value=1.8e-05 Score=80.95 Aligned_cols=95 Identities=20% Similarity=0.272 Sum_probs=64.6
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 008604 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (560)
+||+|||+|.+|+.+|..++..|+ +++++|++++.++.....+....... ....+. +.++++++
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~-------------~~~~i~-~~~~~~~~ 72 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFT-------------SPTKIY-AGDYSDCK 72 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhcccc-------------CCeEEE-eCCHHHhC
Confidence 599999999999999999999998 89999999887654332222211000 001233 45788999
Q ss_pred CCCEEEEeccC--------------ChHHHHHHHHHHHhhcCCCc
Q 008604 226 DVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHC 256 (560)
Q Consensus 226 ~aDlVIeav~e--------------~~~~k~~~~~~l~~~~~~~~ 256 (560)
+||+||.+.-. |..+-+++..++.++.+...
T Consensus 73 ~adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~ 117 (315)
T PRK00066 73 DADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGI 117 (315)
T ss_pred CCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeE
Confidence 99999987621 33355666667777765433
No 223
>PRK08605 D-lactate dehydrogenase; Validated
Probab=97.91 E-value=2.3e-05 Score=80.88 Aligned_cols=99 Identities=18% Similarity=0.102 Sum_probs=68.6
Q ss_pred eEEEEEcCccchHHHHHHHH-hCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 008604 148 KKVAILGGGLMGSGIATALI-LSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (560)
++|+|||+|.||..+|..++ ..|.+|+.+|++...... .+ +....++ +.++
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~--------------~~-------------~~~~~~l~ell~ 199 (332)
T PRK08605 147 LKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAA--------------TY-------------VDYKDTIEEAVE 199 (332)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhHH--------------hh-------------ccccCCHHHHHH
Confidence 58999999999999999994 468999999998643210 00 1112344 4578
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccH---HHHHhhc
Q 008604 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL---NLIGERT 274 (560)
Q Consensus 226 ~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i---~~la~~~ 274 (560)
+||+|+.++|.....+.-+-.++.+.++++++|+ |+|.-.+ ..+.+.+
T Consensus 200 ~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailI-N~sRG~~vd~~aL~~aL 250 (332)
T PRK08605 200 GADIVTLHMPATKYNHYLFNADLFKHFKKGAVFV-NCARGSLVDTKALLDAL 250 (332)
T ss_pred hCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEE-ECCCCcccCHHHHHHHH
Confidence 9999999999877665433345677789999775 6665332 3555554
No 224
>PLN02928 oxidoreductase family protein
Probab=97.90 E-value=6.9e-05 Score=77.79 Aligned_cols=125 Identities=14% Similarity=0.060 Sum_probs=79.1
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (560)
++|+|||.|.||..+|..+...|.+|+.||++........ .+ +................++ +.+++
T Consensus 160 ktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~------------~~-~~~~~~~~~~~~~~~~~~L~ell~~ 226 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDG------------LL-IPNGDVDDLVDEKGGHEDIYEFAGE 226 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhh------------hc-cccccccccccccCcccCHHHHHhh
Confidence 6999999999999999999999999999999732211000 00 0000000000000011234 45789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCc---ccHHHHHhhccC-CCcEeecccC
Q 008604 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTYS-KDRIVGAHFF 286 (560)
Q Consensus 227 aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSs---l~i~~la~~~~~-~~r~~g~hf~ 286 (560)
||+|+.++|-+.+.+.-+-++..+.++++++|+ |++- +.-..+.+++.. .-...++-.|
T Consensus 227 aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lI-NvaRG~lVde~AL~~AL~~g~i~gAaLDV~ 289 (347)
T PLN02928 227 ADIVVLCCTLTKETAGIVNDEFLSSMKKGALLV-NIARGGLLDYDAVLAALESGHLGGLAIDVA 289 (347)
T ss_pred CCEEEECCCCChHhhcccCHHHHhcCCCCeEEE-ECCCccccCHHHHHHHHHcCCeeEEEEccC
Confidence 999999999888876666677888899999885 7764 344566666642 2333445544
No 225
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=97.90 E-value=7.5e-05 Score=81.90 Aligned_cols=129 Identities=16% Similarity=0.071 Sum_probs=84.6
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (560)
++|+|||.|.||..+|..+...|++|+.||+.... +.. .+.| +....++ +.+++
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~-----------~~~g-------------~~~~~~l~ell~~ 193 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISP-ERA-----------EQLG-------------VELVDDLDELLAR 193 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHH-----------HhcC-------------CEEcCCHHHHHhh
Confidence 68999999999999999999999999999985221 110 0111 1112234 44789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCccc---HHHHHhhccC-CCcEeecccC--CCC-----CCCCeE
Q 008604 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID---LNLIGERTYS-KDRIVGAHFF--SPA-----HVMPLL 295 (560)
Q Consensus 227 aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~---i~~la~~~~~-~~r~~g~hf~--~P~-----~~~~lv 295 (560)
||+|+.++|-+.+.+.-+=++..+.++++++++ |+|.-. -..+.+++.. .-+..++--| .|+ +..+-|
T Consensus 194 aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lI-N~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nv 272 (525)
T TIGR01327 194 ADFITVHTPLTPETRGLIGAEELAKMKKGVIIV-NCARGGIIDEAALYEALEEGHVRAAALDVFEKEPPTDNPLFDLDNV 272 (525)
T ss_pred CCEEEEccCCChhhccCcCHHHHhcCCCCeEEE-EcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCCCCChhhcCCCe
Confidence 999999999888776666566777889999775 676533 4466666542 3333444434 243 234455
Q ss_pred EEEeCCC
Q 008604 296 EIVRTNQ 302 (560)
Q Consensus 296 Eiv~g~~ 302 (560)
-+.||-.
T Consensus 273 i~TPHia 279 (525)
T TIGR01327 273 IATPHLG 279 (525)
T ss_pred EECCCcc
Confidence 5666543
No 226
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=97.90 E-value=5.4e-05 Score=79.24 Aligned_cols=125 Identities=16% Similarity=0.189 Sum_probs=85.9
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhh---hcccCCC----CCc-------------h
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVAT---LYKTDKI----EPL-------------G 60 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~---~~~~~~~----~~~-------------~ 60 (560)
|+|||++++|++|+++||||++||++++.+.+.+++ +++..+ |.... ....... .+. .
T Consensus 168 l~LTG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~la-~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~ 245 (381)
T PLN02988 168 VGLTGARLDGAEMLACGLATHFVPSTRLTALEADLC-RIGSND-PTFASTILDAYTQHPRLKPQSAYHRLDVIDRCFSRR 245 (381)
T ss_pred HHHcCCCCCHHHHHHcCCceEecCHhHHHHHHHHHH-HhhccC-HHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCC
Confidence 579999999999999999999999999988888887 554431 11110 0000000 000 0
Q ss_pred hHHHHHH------------HHHHHHHH-hCCCCCcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhc---CHHHHHHHHH
Q 008604 61 EAREIFK------------FARAQARK-QAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLR---SETCKSLVHI 124 (560)
Q Consensus 61 ~~~~~~~------------~~~~~~~~-~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~---s~~~~~~~~a 124 (560)
....+++ +++...+. +.++|.++..+.+.++++..+++.+.|..|-+.-..++. ++|+.|||+|
T Consensus 246 ~~~~i~~~L~~~~~~~~~~wa~~~~~~l~~~sP~sl~vt~~~~~~~~~~sl~e~~~~e~~~~~~~~~~~~~~DF~EGVRA 325 (381)
T PLN02988 246 TVEEIISALEREATQEADGWISATIQALKKASPASLKISLRSIREGRLQGVGQCLIREYRMVCHVMKGEISKDFVEGCRA 325 (381)
T ss_pred CHHHHHHHHHhhccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCchHHHhHHH
Confidence 0011111 12222222 245677888999999999999999999999999999988 6999999998
Q ss_pred HHh
Q 008604 125 FFA 127 (560)
Q Consensus 125 F~~ 127 (560)
-+-
T Consensus 326 ~Li 328 (381)
T PLN02988 326 ILV 328 (381)
T ss_pred Hhc
Confidence 875
No 227
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=97.89 E-value=0.0004 Score=68.62 Aligned_cols=167 Identities=17% Similarity=0.135 Sum_probs=110.0
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccCCCEEEEeccCChHHHHHHHHHH
Q 008604 170 NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIENVSLKQQIFADL 248 (560)
Q Consensus 170 G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVIeav~e~~~~k~~~~~~l 248 (560)
-++|+++++++++++...+. -| +..+.+. +.+.+||+||.||+ ...-..++.++
T Consensus 9 ~~~I~v~~R~~e~~~~l~~~----------~g-------------~~~~~~~~e~~~~aDiIiLaVk--P~~i~~vl~~l 63 (245)
T TIGR00112 9 AYDIIVINRSPEKLAALAKE----------LG-------------IVASSDAQEAVKEADVVFLAVK--PQDLEEVLSEL 63 (245)
T ss_pred CCeEEEEcCCHHHHHHHHHH----------cC-------------cEEeCChHHHHhhCCEEEEEeC--HHHHHHHHHHH
Confidence 36899999999876543211 11 1122333 34678999999998 44556777888
Q ss_pred HhhcCCCceeeccCCcccHHHHHhhccCCCcEeecccCCCCCCCCeEE-EEeCCCCcHHHHHHHHHHHHhcCCceEEecC
Q 008604 249 EKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLE-IVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327 (560)
Q Consensus 249 ~~~~~~~~ii~sntSsl~i~~la~~~~~~~r~~g~hf~~P~~~~~lvE-iv~g~~t~~e~~~~~~~l~~~lGk~~i~v~d 327 (560)
...+.++.+|+|.+.+++++.+...++...+++-+.+..|.....-+. +..++..+++..+.+..++..+|+.. .+.+
T Consensus 64 ~~~~~~~~~ivS~~agi~~~~l~~~~~~~~~ivR~mPn~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~-~v~E 142 (245)
T TIGR00112 64 KSEKGKDKLLISIAAGVTLEKLSQLLGGTRRVVRVMPNTPAKVGAGVTAIAANANVSEEDRALVLALFKAVGEVV-ELPE 142 (245)
T ss_pred hhhccCCCEEEEecCCCCHHHHHHHcCCCCeEEEECCChHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCEE-EECH
Confidence 777777889999999999999988876545677777766665544333 45677788889999999999999655 4432
Q ss_pred c--cccc-hhchHHHH---HHHHH--HHHHcCCCHHHHHHHHH
Q 008604 328 C--TGFA-VNRMFFPY---TQAAF--LLVERGTDLYLIDRAIT 362 (560)
Q Consensus 328 ~--~G~i-~nri~~~~---~~ea~--~l~~~G~~~~dID~a~~ 362 (560)
. ..+. ..-..-++ +.+++ ..+..|+++++-...+.
T Consensus 143 ~~~~~~talsgsgPA~~~~~~~al~~~~v~~Gl~~~~A~~lv~ 185 (245)
T TIGR00112 143 ALMDAVTALSGSGPAYVFLFIEALADAGVKQGLPRELALELAA 185 (245)
T ss_pred HHcchHHhhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 1 1111 11111122 23332 23457888888877775
No 228
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=97.89 E-value=8e-05 Score=76.27 Aligned_cols=112 Identities=21% Similarity=0.177 Sum_probs=79.5
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeC-CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-ccc
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEV-NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFK 225 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~-~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~ 225 (560)
++|||||+|.+|+.+|..+..-|.+|+.||+ +....... .+ .....+++ .++
T Consensus 143 kTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~-------------~~-------------~~~~~~Ld~lL~ 196 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGV-------------DG-------------VVGVDSLDELLA 196 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhcc-------------cc-------------ceecccHHHHHh
Confidence 6899999999999999999999999999999 43322110 01 11223453 478
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcc---cHHHHHhhccC-CCcEeecccC
Q 008604 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI---DLNLIGERTYS-KDRIVGAHFF 286 (560)
Q Consensus 226 ~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl---~i~~la~~~~~-~~r~~g~hf~ 286 (560)
.||+|+..+|...+.+.-+=++..+.+++++++ .|+|-- .-..+.+++.. .-+-.++-.|
T Consensus 197 ~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gail-IN~aRG~vVde~aL~~AL~~G~i~gA~lDVf 260 (324)
T COG0111 197 EADILTLHLPLTPETRGLINAEELAKMKPGAIL-INAARGGVVDEDALLAALDSGKIAGAALDVF 260 (324)
T ss_pred hCCEEEEcCCCCcchhcccCHHHHhhCCCCeEE-EECCCcceecHHHHHHHHHcCCcceEEecCC
Confidence 999999999998887777777777889999966 488753 34466666643 2233445445
No 229
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=97.87 E-value=2.7e-05 Score=74.72 Aligned_cols=93 Identities=12% Similarity=0.156 Sum_probs=82.8
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhhcccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL 80 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (560)
|||-|++++|+||.+.|||+++++.+.+.+.++.-+++++.- | +
T Consensus 171 ~ll~~~kltA~Ea~~~glVskif~~~tf~~~v~~~ikq~s~l--~----------------------------------p 214 (266)
T KOG0016|consen 171 MLLFGEKLTAQEACEKGLVSKIFPAETFNEEVLKKIKQYSKL--S----------------------------------P 214 (266)
T ss_pred HHHhCCcccHHHHHhcCchhhhcChHHHHHHHHHHHHHHhcC--C----------------------------------H
Confidence 578999999999999999999999999999999999998883 2 1
Q ss_pred CcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHhcCHHHHHHHHHHHhcc
Q 008604 81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQR 129 (560)
Q Consensus 81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~~s~~~~~~~~aF~~kr 129 (560)
......|++++......+..+.+.|.......+.|+|+-+.+..|+.+.
T Consensus 215 ~sl~~~K~L~rs~~k~~l~~an~~E~~~l~~~W~s~e~~~~~~~~~~~~ 263 (266)
T KOG0016|consen 215 ESLLGMKKLLRSNIKEELIKANEEECNVLLKQWVSAECLARFKQYLSKK 263 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccChHHHHHHHHHhccc
Confidence 3667788888887777888999999999999999999999999998864
No 230
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=97.87 E-value=1.2e-05 Score=75.53 Aligned_cols=113 Identities=22% Similarity=0.206 Sum_probs=75.0
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (560)
++|+|||.|.+|..+|..+..-|.+|+.||++........ ..+ .. ..++ +.++.
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~-----------~~~-------------~~-~~~l~ell~~ 91 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGAD-----------EFG-------------VE-YVSLDELLAQ 91 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHH-----------HTT-------------EE-ESSHHHHHHH
T ss_pred CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcc-----------ccc-------------ce-eeehhhhcch
Confidence 6999999999999999999999999999999977543110 111 11 2244 44788
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCc---ccHHHHHhhccC-CCcEeecccC
Q 008604 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTYS-KDRIVGAHFF 286 (560)
Q Consensus 227 aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSs---l~i~~la~~~~~-~~r~~g~hf~ 286 (560)
||+|+.++|-+.+.+.-+=++..+.++++++++ |++- +.-..+.+.+.. +-+-.++--|
T Consensus 92 aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lv-N~aRG~~vde~aL~~aL~~g~i~ga~lDV~ 154 (178)
T PF02826_consen 92 ADIVSLHLPLTPETRGLINAEFLAKMKPGAVLV-NVARGELVDEDALLDALESGKIAGAALDVF 154 (178)
T ss_dssp -SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEE-ESSSGGGB-HHHHHHHHHTTSEEEEEESS-
T ss_pred hhhhhhhhccccccceeeeeeeeeccccceEEE-eccchhhhhhhHHHHHHhhccCceEEEECC
Confidence 999999999777666555566777899999875 6664 334466666542 3333444433
No 231
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=97.87 E-value=0.0033 Score=66.13 Aligned_cols=147 Identities=14% Similarity=0.120 Sum_probs=89.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEE------EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVI------LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~------l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (560)
++|+|||.|.+|..-|..+...|++|+ .+|.+.+.-+.+ .+.|. .+.+..
T Consensus 37 KtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA-----------~~dGF-------------~v~~~~ 92 (487)
T PRK05225 37 KKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKA-----------TENGF-------------KVGTYE 92 (487)
T ss_pred CEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHH-----------HhcCC-------------ccCCHH
Confidence 799999999999999999999999999 444333333322 12231 122223
Q ss_pred ccccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccHHHHHhhccCCCcEeecccCCCCC----------C
Q 008604 222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH----------V 291 (560)
Q Consensus 222 ~~~~~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~~la~~~~~~~r~~g~hf~~P~~----------~ 291 (560)
+.++.||+|+..+|+. . ...+++++.+.+++++++.-+ -+..|..-.-..+....++-+-|=.|-+ .
T Consensus 93 Ea~~~ADvVviLlPDt-~-q~~v~~~i~p~LK~Ga~L~fs-HGFni~~~~i~~~~dvdVimvAPKgpG~~vR~~y~~G~G 169 (487)
T PRK05225 93 ELIPQADLVINLTPDK-Q-HSDVVRAVQPLMKQGAALGYS-HGFNIVEVGEQIRKDITVVMVAPKCPGTEVREEYKRGFG 169 (487)
T ss_pred HHHHhCCEEEEcCChH-H-HHHHHHHHHhhCCCCCEEEec-CCceeeeCceeCCCCCcEEEECCCCCCchHHHHHhcCCC
Confidence 5689999999999977 3 788889999999999988532 2333332111111111222222212211 1
Q ss_pred CC-eEEEEeCCCCcHHHHHHHHHHHHhcCCc
Q 008604 292 MP-LLEIVRTNQTSPQVIVDLLDIGKKIKKT 321 (560)
Q Consensus 292 ~~-lvEiv~g~~t~~e~~~~~~~l~~~lGk~ 321 (560)
.| ++-|-.-...+-...+.+..+...+|..
T Consensus 170 vp~l~AV~~~qD~~g~a~~~ala~a~~iG~~ 200 (487)
T PRK05225 170 VPTLIAVHPENDPKGEGMAIAKAWAAATGGH 200 (487)
T ss_pred ceEEEEEeecCCCCchHHHHHHHHHHHhCCC
Confidence 22 3333321334555788888888888865
No 232
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=97.86 E-value=0.00017 Score=73.47 Aligned_cols=124 Identities=19% Similarity=0.205 Sum_probs=79.4
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (560)
+||.|+|+|.||+-++..|+++|++|+++-+++. +++.. +.|..-.+.............+.+.+..+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~-----------~~GL~i~~~~~~~~~~~~~~~~~~~~~~~ 68 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALK-----------KKGLRIEDEGGNFTTPVVAATDAEALGPA 68 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHH-----------hCCeEEecCCCccccccccccChhhcCCC
Confidence 5899999999999999999999988888888875 44332 22221100000011111222334567799
Q ss_pred CEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccHH-HHHhhccCCCcEeeccc
Q 008604 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN-LIGERTYSKDRIVGAHF 285 (560)
Q Consensus 228 DlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~-~la~~~~~~~r~~g~hf 285 (560)
|+||.++-- ---.+.++.+.+.++++++|.+.--++.-. .+....++..-+.|+-+
T Consensus 69 Dlviv~vKa--~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~~~~~~~il~G~~~ 125 (307)
T COG1893 69 DLVIVTVKA--YQLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRKILPKETVLGGVTT 125 (307)
T ss_pred CEEEEEecc--ccHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHHhCCcceEEEEEee
Confidence 999999852 234577889999999999877766667644 45555443323444433
No 233
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=97.84 E-value=0.00011 Score=74.35 Aligned_cols=89 Identities=22% Similarity=0.280 Sum_probs=59.4
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (560)
++|+|||.|.||..+|..+...|.+|+++|++++.++.+. +.|.. .+. ..++ +.+.+
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~-----------~~g~~----------~~~-~~~l~~~l~~ 209 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARIT-----------EMGLI----------PFP-LNKLEEKVAE 209 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HCCCe----------eec-HHHHHHHhcc
Confidence 6899999999999999999999999999999987654321 11210 000 1122 34679
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCc
Q 008604 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (560)
Q Consensus 227 aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSs 264 (560)
+|+||+++|..+- . ++..+.+++++++. |+++
T Consensus 210 aDiVint~P~~ii-~----~~~l~~~k~~aliI-Dlas 241 (287)
T TIGR02853 210 IDIVINTIPALVL-T----ADVLSKLPKHAVII-DLAS 241 (287)
T ss_pred CCEEEECCChHHh-C----HHHHhcCCCCeEEE-EeCc
Confidence 9999999985421 1 23334556677664 4433
No 234
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=97.84 E-value=5.4e-05 Score=77.38 Aligned_cols=123 Identities=19% Similarity=0.209 Sum_probs=76.3
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCc--EEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYP--VILKEVNE--KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE 222 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~--V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (560)
+||+|||+ |..|..++..++..|+. |+++|+++ +.++.....+. +.....+ ...+++.+++++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~---d~~~~~~---------~~~~i~~~~d~~ 68 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIY---DALAAAG---------IDAEIKISSDLS 68 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhh---hchhccC---------CCcEEEECCCHH
Confidence 48999998 99999999999999975 99999964 33332221111 1111111 011455566788
Q ss_pred cccCCCEEEEecc----C--C-h-------HHHHHHHHHHHhhcCCCceeeccCCcccHHH--HHhhccC-CCcEeec
Q 008604 223 SFKDVDMVIEAII----E--N-V-------SLKQQIFADLEKYCPPHCILASNTSTIDLNL--IGERTYS-KDRIVGA 283 (560)
Q Consensus 223 ~~~~aDlVIeav~----e--~-~-------~~k~~~~~~l~~~~~~~~ii~sntSsl~i~~--la~~~~~-~~r~~g~ 283 (560)
++.+||+||.++. + + . .+-+++...+.+.++ ++++...++..++-. +...... +.|++|+
T Consensus 69 ~l~~aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~-~~~viv~~npvd~~t~~~~~~~g~~~~~viG~ 145 (309)
T cd05294 69 DVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAP-DTKILVVTNPVDVMTYKALKESGFDKNRVFGL 145 (309)
T ss_pred HhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEeCCchHHHHHHHHHhcCCCHHHEeec
Confidence 8999999999983 1 1 1 345566667777775 666666666665432 2222222 3566665
No 235
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=97.83 E-value=4.5e-05 Score=76.89 Aligned_cols=98 Identities=29% Similarity=0.398 Sum_probs=64.3
Q ss_pred eEEEEEcCccchHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 008604 148 KKVAILGGGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (560)
+||+|||+|.+|+++|..++..+ .+++++|++++.++.-...+.... .....-.++..+.++++++
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~------------~~~~~~~~i~~~~~y~~~~ 68 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAA------------APLGSDVKITGDGDYEDLK 68 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcc------------hhccCceEEecCCChhhhc
Confidence 48999999999999999998775 489999999654432111111000 0000001233224489999
Q ss_pred CCCEEEEec--c------------CChHHHHHHHHHHHhhcCCCcee
Q 008604 226 DVDMVIEAI--I------------ENVSLKQQIFADLEKYCPPHCIL 258 (560)
Q Consensus 226 ~aDlVIeav--~------------e~~~~k~~~~~~l~~~~~~~~ii 258 (560)
++|+||.+. | .|..+.+++-+++.+.++ +.++
T Consensus 69 ~aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~-d~iv 114 (313)
T COG0039 69 GADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAP-DAIV 114 (313)
T ss_pred CCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCC-CeEE
Confidence 999999987 2 245577777788888887 4443
No 236
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=97.80 E-value=0.0001 Score=75.32 Aligned_cols=114 Identities=18% Similarity=0.141 Sum_probs=73.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhhhcccccccCcccccC
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQEKFEKTISLLTGVLDYESFKD 226 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~~~~ 226 (560)
+||+|||+|.||+-+|..|+++|++|++++++.+.++...+ +.|. +....-.... .+. ..+.+....
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~----------~~Gl~i~~~g~~~~~-~~~-~~~~~~~~~ 70 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQ----------AGGLTLVEQGQASLY-AIP-AETADAAEP 70 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhh----------cCCeEEeeCCcceee-ccC-CCCcccccc
Confidence 58999999999999999999999999999998766653321 0111 0000000000 011 111233568
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccH-HHHHhhcc
Q 008604 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL-NLIGERTY 275 (560)
Q Consensus 227 aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i-~~la~~~~ 275 (560)
+|+||.|+-- .++ .+.++.+.+++.++++|++-.-++.. +.+...++
T Consensus 71 ~D~viv~vK~-~~~-~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~~~ 118 (305)
T PRK05708 71 IHRLLLACKA-YDA-EPAVASLAHRLAPGAELLLLQNGLGSQDAVAARVP 118 (305)
T ss_pred cCEEEEECCH-HhH-HHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHhCC
Confidence 9999999853 233 35678888899999988776666664 34555544
No 237
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.80 E-value=4.6e-05 Score=77.66 Aligned_cols=93 Identities=17% Similarity=0.335 Sum_probs=62.0
Q ss_pred EEEEEcCccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhh---c-ccccccCcc
Q 008604 149 KVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTI---S-LLTGVLDYE 222 (560)
Q Consensus 149 ~V~VIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~---~-~i~~~~~~~ 222 (560)
||+|||+|.+|+.+|..++..|. +++++|++++.++.-...+... .... . ++. +.+++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~---------------~~~~~~~~~~i~-~~~y~ 64 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHA---------------TALTYSTNTKIR-AGDYD 64 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhh---------------hccCCCCCEEEE-ECCHH
Confidence 69999999999999999999886 7999999877654322111110 0111 1 233 45789
Q ss_pred cccCCCEEEEecc------CC----------hHHHHHHHHHHHhhcCCCcee
Q 008604 223 SFKDVDMVIEAII------EN----------VSLKQQIFADLEKYCPPHCIL 258 (560)
Q Consensus 223 ~~~~aDlVIeav~------e~----------~~~k~~~~~~l~~~~~~~~ii 258 (560)
++++||+||.+.- ++ ..+-+++..++.++.+ ++++
T Consensus 65 ~~~~aDivvitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p-~~i~ 115 (307)
T cd05290 65 DCADADIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTK-EAVI 115 (307)
T ss_pred HhCCCCEEEECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCC-CeEE
Confidence 9999999998862 11 2244555566777774 4444
No 238
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=97.79 E-value=5.4e-05 Score=70.66 Aligned_cols=95 Identities=26% Similarity=0.325 Sum_probs=62.9
Q ss_pred EEEEEcCccchHHHHHHHHhCCCc-EEEEeCCH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc---
Q 008604 149 KVAILGGGLMGSGIATALILSNYP-VILKEVNE---KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY--- 221 (560)
Q Consensus 149 ~V~VIG~G~mG~~iA~~l~~~G~~-V~l~d~~~---~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--- 221 (560)
+|+|||+|.||+.++..|++.|.. ++++|.+. +.+.+-. .... +-|....+.....+.++.+..+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~-----~~~~--~vg~~Ka~~~~~~l~~lnp~v~i~~~ 73 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQ-----YFLS--QIGEPKVEALKENLREINPFVKIEAI 73 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhccc-----ccHh--hCCChHHHHHHHHHHHHCCCCEEEEE
Confidence 589999999999999999999984 99999885 3333211 0001 12322233333334333222211
Q ss_pred ----------ccccCCCEEEEeccCChHHHHHHHHHHHhh
Q 008604 222 ----------ESFKDVDMVIEAIIENVSLKQQIFADLEKY 251 (560)
Q Consensus 222 ----------~~~~~aDlVIeav~e~~~~k~~~~~~l~~~ 251 (560)
+.++++|+||+| .++.+.|..+...+.+.
T Consensus 74 ~~~~~~~~~~~~l~~~DlVi~~-~d~~~~r~~i~~~~~~~ 112 (174)
T cd01487 74 NIKIDENNLEGLFGDCDIVVEA-FDNAETKAMLAESLLGN 112 (174)
T ss_pred EeecChhhHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHH
Confidence 236889999999 78899998888887765
No 239
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=97.79 E-value=0.00013 Score=80.09 Aligned_cols=128 Identities=18% Similarity=0.112 Sum_probs=85.3
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (560)
++|+|||.|.||..+|..+...|++|+.||++.... .. ...| +... ++ +.+++
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~-~~-----------~~~g-------------~~~~-~l~ell~~ 194 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISPE-RA-----------AQLG-------------VELV-SLDELLAR 194 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChh-HH-----------HhcC-------------CEEE-cHHHHHhh
Confidence 689999999999999999999999999999853211 10 0111 1112 33 45789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCccc---HHHHHhhccC-CCcEeecccC--CCC-----CCCCeE
Q 008604 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID---LNLIGERTYS-KDRIVGAHFF--SPA-----HVMPLL 295 (560)
Q Consensus 227 aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~---i~~la~~~~~-~~r~~g~hf~--~P~-----~~~~lv 295 (560)
||+|+.++|-..+.+.-+-++..+.++++++++ |+|.-. -..+.+++.. .-+-.++.-| .|+ +..+-|
T Consensus 195 aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lI-N~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nv 273 (526)
T PRK13581 195 ADFITLHTPLTPETRGLIGAEELAKMKPGVRII-NCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTDSPLFELPNV 273 (526)
T ss_pred CCEEEEccCCChHhhcCcCHHHHhcCCCCeEEE-ECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCCCchhhcCCCe
Confidence 999999999888877766577888899999875 666433 4466666532 3333444444 233 234555
Q ss_pred EEEeCCC
Q 008604 296 EIVRTNQ 302 (560)
Q Consensus 296 Eiv~g~~ 302 (560)
-+.||-.
T Consensus 274 ilTPHia 280 (526)
T PRK13581 274 VVTPHLG 280 (526)
T ss_pred eEcCccc
Confidence 5666643
No 240
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=97.75 E-value=9.5e-05 Score=67.21 Aligned_cols=97 Identities=24% Similarity=0.298 Sum_probs=59.3
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (560)
+++.|+|.|..|+++|+.|...|..|+++|++|-++-++. ..| .+..+-.+++..+
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~-----------~dG-------------f~v~~~~~a~~~a 79 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAA-----------MDG-------------FEVMTLEEALRDA 79 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHH-----------HTT--------------EEE-HHHHTTT-
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhh-----------hcC-------------cEecCHHHHHhhC
Confidence 5899999999999999999999999999999996543322 122 2222222568899
Q ss_pred CEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCc---ccHHHHHh
Q 008604 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGE 272 (560)
Q Consensus 228 DlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSs---l~i~~la~ 272 (560)
|++|.+.-..--+..+-| +.+++++|+++.++. +.+..+.+
T Consensus 80 di~vtaTG~~~vi~~e~~----~~mkdgail~n~Gh~d~Eid~~~L~~ 123 (162)
T PF00670_consen 80 DIFVTATGNKDVITGEHF----RQMKDGAILANAGHFDVEIDVDALEA 123 (162)
T ss_dssp SEEEE-SSSSSSB-HHHH----HHS-TTEEEEESSSSTTSBTHHHHHT
T ss_pred CEEEECCCCccccCHHHH----HHhcCCeEEeccCcCceeEeeccccc
Confidence 999988754332333333 357889999755543 34445443
No 241
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=97.69 E-value=0.00024 Score=64.47 Aligned_cols=111 Identities=23% Similarity=0.223 Sum_probs=70.4
Q ss_pred EEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhhhcccccc---cCc-ccc
Q 008604 150 VAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQEKFEKTISLLTGV---LDY-ESF 224 (560)
Q Consensus 150 V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~---~~~-~~~ 224 (560)
|+|+|+|.||.-+|..|+++|++|+++++++ .++... +.|. ++..+ --..+... .+. +..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~-----------~~g~~~~~~~---~~~~~~~~~~~~~~~~~~ 65 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIK-----------EQGLTITGPD---GDETVQPPIVISAPSADA 65 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHH-----------HHCEEEEETT---EEEEEEEEEEESSHGHHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhh-----------heeEEEEecc---cceecccccccCcchhcc
Confidence 7899999999999999999999999999998 555422 1121 00000 00001111 111 246
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccH-HHHHhhccCC
Q 008604 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL-NLIGERTYSK 277 (560)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i-~~la~~~~~~ 277 (560)
..+|+||.|+.- .++ ..+++.+.+++.+++.|++-.-++.. +.+.+..+.+
T Consensus 66 ~~~D~viv~vKa-~~~-~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~~~~~ 117 (151)
T PF02558_consen 66 GPYDLVIVAVKA-YQL-EQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEYFPRP 117 (151)
T ss_dssp STESEEEE-SSG-GGH-HHHHHHHCTGEETTEEEEEESSSSSHHHHHHCHSTGS
T ss_pred CCCcEEEEEecc-cch-HHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHHcCCC
Confidence 789999999963 233 45777799999999777666666764 4455555433
No 242
>PRK05442 malate dehydrogenase; Provisional
Probab=97.66 E-value=9.3e-05 Score=75.96 Aligned_cols=102 Identities=15% Similarity=0.080 Sum_probs=65.7
Q ss_pred ceEEEEEcC-ccchHHHHHHHHhCCC-------cEEEEeCCHH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccc
Q 008604 147 VKKVAILGG-GLMGSGIATALILSNY-------PVILKEVNEK--FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLT 216 (560)
Q Consensus 147 ~~~V~VIG~-G~mG~~iA~~l~~~G~-------~V~l~d~~~~--~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~ 216 (560)
..||+|||+ |.+|+.+|..++..|+ +++++|+++. .++.-.-.+..... .......
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~--------------~~~~~~~ 69 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAF--------------PLLAGVV 69 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhh--------------hhcCCcE
Confidence 469999998 9999999999988765 7999999643 23211111111000 0111112
Q ss_pred c-ccCcccccCCCEEEEecc--------------CChHHHHHHHHHHHhhcCCCceeeccC
Q 008604 217 G-VLDYESFKDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNT 262 (560)
Q Consensus 217 ~-~~~~~~~~~aDlVIeav~--------------e~~~~k~~~~~~l~~~~~~~~ii~snt 262 (560)
. +.+++++++||+||.+.- .+..+-+++..+|.++.++++++..-|
T Consensus 70 i~~~~y~~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs 130 (326)
T PRK05442 70 ITDDPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG 130 (326)
T ss_pred EecChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 2 456799999999998762 133456667778888887777665444
No 243
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=97.63 E-value=0.00033 Score=74.29 Aligned_cols=102 Identities=16% Similarity=0.170 Sum_probs=69.6
Q ss_pred ceEEEEEcC-ccchHHHHHHHHhC-------CC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccc
Q 008604 147 VKKVAILGG-GLMGSGIATALILS-------NY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLT 216 (560)
Q Consensus 147 ~~~V~VIG~-G~mG~~iA~~l~~~-------G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~ 216 (560)
.-||+|||+ |.+|..+|..++.. |+ +++++|++++.++.-.-.++.... ..+..+.
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~--------------~~~~~v~ 165 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLY--------------PLLREVS 165 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhh--------------hhcCceE
Confidence 469999999 99999999999988 76 899999999887643322222110 1112233
Q ss_pred -cccCcccccCCCEEEEecc--------------CChHHHHHHHHHHHhhcCCCceeeccC
Q 008604 217 -GVLDYESFKDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNT 262 (560)
Q Consensus 217 -~~~~~~~~~~aDlVIeav~--------------e~~~~k~~~~~~l~~~~~~~~ii~snt 262 (560)
.+.+++++++||+||.+.- .|..+-+++...|.++..+++++..-+
T Consensus 166 i~~~~ye~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs 226 (444)
T PLN00112 166 IGIDPYEVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG 226 (444)
T ss_pred EecCCHHHhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC
Confidence 2467899999999998762 123355666667777666677665333
No 244
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=97.62 E-value=6.2e-05 Score=74.05 Aligned_cols=42 Identities=21% Similarity=0.378 Sum_probs=38.8
Q ss_pred CcccCCCCChHHHHhCCCcceecCC-cchHHHHHHHHHhhhcc
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAP-NQLVSTARQWALDILEH 42 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~-~~l~~~A~~~a~~la~~ 42 (560)
|++||++++|+||+++||||+|||+ +++++.|.++|++++..
T Consensus 160 llltG~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~A~~ia~~ 202 (239)
T PLN02267 160 VLLRAAKLTAEEAVEMGIVDSAHDSAEETVEAAVRLGEELAAR 202 (239)
T ss_pred HHHcCCcCCHHHHHHCCCcceecCCHHHHHHHHHHHHHHHhhc
Confidence 5789999999999999999999985 68999999999999885
No 245
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=97.61 E-value=0.00035 Score=71.52 Aligned_cols=108 Identities=19% Similarity=0.129 Sum_probs=78.7
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (560)
++|+|||.|.+|+.+|..+..-|.+|..||++....+ .+ .. ..++ +.++.
T Consensus 146 ktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~~---------------~~-------------~~-~~~l~ell~~ 196 (311)
T PRK08410 146 KKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNKN---------------EE-------------YE-RVSLEELLKT 196 (311)
T ss_pred CEEEEECCCHHHHHHHHHHhhcCCEEEEECCCccccc---------------cC-------------ce-eecHHHHhhc
Confidence 6999999999999999999988999999998632100 01 01 1234 34789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCc---ccHHHHHhhccC-CCcEeecccC
Q 008604 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTYS-KDRIVGAHFF 286 (560)
Q Consensus 227 aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSs---l~i~~la~~~~~-~~r~~g~hf~ 286 (560)
||+|+.++|-+.+.+.-+=++..+.++++++++ |+|- +.-..+.+++.. .-+ .++-.|
T Consensus 197 sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lI-N~aRG~vVDe~AL~~AL~~g~i~-AaLDV~ 258 (311)
T PRK08410 197 SDIISIHAPLNEKTKNLIAYKELKLLKDGAILI-NVGRGGIVNEKDLAKALDEKDIY-AGLDVL 258 (311)
T ss_pred CCEEEEeCCCCchhhcccCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHHHcCCeE-EEEecC
Confidence 999999999888877777777888899999885 7774 334566666643 333 566555
No 246
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=97.59 E-value=0.00016 Score=74.10 Aligned_cols=101 Identities=19% Similarity=0.157 Sum_probs=66.6
Q ss_pred ceEEEEEcC-ccchHHHHHHHHhCCC-------cEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhc--c
Q 008604 147 VKKVAILGG-GLMGSGIATALILSNY-------PVILKEVNE--KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTIS--L 214 (560)
Q Consensus 147 ~~~V~VIG~-G~mG~~iA~~l~~~G~-------~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~--~ 214 (560)
.-||+|||+ |.+|+.+|..+...|+ +++++|+++ +.++.-.-.+.. .. + .... .
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~--------~~-~-----~~~~~~~ 68 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELED--------CA-F-----PLLAGVV 68 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhh--------cc-c-----cccCCcE
Confidence 358999998 9999999999998885 899999965 223221111111 00 0 0011 1
Q ss_pred cccccCcccccCCCEEEEecc--------------CChHHHHHHHHHHHhhcCCCceeeccC
Q 008604 215 LTGVLDYESFKDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNT 262 (560)
Q Consensus 215 i~~~~~~~~~~~aDlVIeav~--------------e~~~~k~~~~~~l~~~~~~~~ii~snt 262 (560)
++ +.+++++++||+||.+.- .+..+-+++..++.+++++++++...|
T Consensus 69 i~-~~~~~~~~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs 129 (323)
T TIGR01759 69 AT-TDPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG 129 (323)
T ss_pred Ee-cChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence 22 456899999999998761 133456677778888888677665444
No 247
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.57 E-value=9.3e-05 Score=74.29 Aligned_cols=69 Identities=14% Similarity=0.281 Sum_probs=53.9
Q ss_pred eEEEEEcCc-cchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 008604 148 KKVAILGGG-LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (560)
Q Consensus 148 ~~V~VIG~G-~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (560)
++|+|||.| .||.+||..|.++|++|++|++....++ +.+++
T Consensus 160 k~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l~-------------------------------------e~~~~ 202 (301)
T PRK14194 160 KHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAK-------------------------------------ALCRQ 202 (301)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCHH-------------------------------------HHHhc
Confidence 689999996 9999999999999999999986543211 23568
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeec
Q 008604 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260 (560)
Q Consensus 227 aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~s 260 (560)
||+||.+++....++..+ ++++++++.
T Consensus 203 ADIVIsavg~~~~v~~~~-------ik~GaiVID 229 (301)
T PRK14194 203 ADIVVAAVGRPRLIDADW-------LKPGAVVID 229 (301)
T ss_pred CCEEEEecCChhcccHhh-------ccCCcEEEE
Confidence 999999998664444333 778888864
No 248
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=97.57 E-value=0.00062 Score=69.97 Aligned_cols=101 Identities=16% Similarity=0.090 Sum_probs=73.3
Q ss_pred eEEEEEcCccchHHHHHHHH-hCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 008604 148 KKVAILGGGLMGSGIATALI-LSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (560)
++|+|||.|.+|..+|..+. .-|.+|..+|+....... ...+ +.. .++ +.++
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~~------------~~~~-------------~~~-~~l~ell~ 199 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAE------------ERFN-------------ARY-CDLDTLLQ 199 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhhH------------HhcC-------------cEe-cCHHHHHH
Confidence 79999999999999999987 679999999986421110 0011 111 234 4478
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcc---cHHHHHhhcc
Q 008604 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI---DLNLIGERTY 275 (560)
Q Consensus 226 ~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl---~i~~la~~~~ 275 (560)
+||+|+.++|-+.+.+.-+=++..+.++++++++ |++-- .-..+.+++.
T Consensus 200 ~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lI-N~aRG~vVde~AL~~AL~ 251 (323)
T PRK15409 200 ESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFI-NAGRGPVVDENALIAALQ 251 (323)
T ss_pred hCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEE-ECCCccccCHHHHHHHHH
Confidence 9999999999888877777677888899999885 77643 3456666664
No 249
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=97.57 E-value=7.1e-05 Score=78.23 Aligned_cols=109 Identities=14% Similarity=0.145 Sum_probs=71.7
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cccC
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD 226 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 226 (560)
++|+|||.|.||+.+|..+...|++|++||+.....+ +. .. ..+++ .+++
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~~----------------~~------------~~-~~~l~ell~~ 167 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAE----------------GD------------GD-FVSLERILEE 167 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCcccccc----------------cC------------cc-ccCHHHHHhh
Confidence 6899999999999999999999999999998643210 00 00 12343 4689
Q ss_pred CCEEEEeccCChH----HHHHHHHHHHhhcCCCceeeccCCccc---HHHHHhhcc-CCCcEeecccC
Q 008604 227 VDMVIEAIIENVS----LKQQIFADLEKYCPPHCILASNTSTID---LNLIGERTY-SKDRIVGAHFF 286 (560)
Q Consensus 227 aDlVIeav~e~~~----~k~~~~~~l~~~~~~~~ii~sntSsl~---i~~la~~~~-~~~r~~g~hf~ 286 (560)
||+|+.++|-..+ ...-+=++..+.++++++++ |+|.-+ -..+.+.+. ......++--|
T Consensus 168 aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailI-N~aRG~vVde~AL~~aL~~g~i~~a~LDV~ 234 (381)
T PRK00257 168 CDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLI-NASRGAVVDNQALREALLSGEDLDAVLDVW 234 (381)
T ss_pred CCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEE-ECCCCcccCHHHHHHHHHhCCCcEEEEeCC
Confidence 9999999996552 32333345667789999875 777543 345555553 23333444444
No 250
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.55 E-value=9.6e-05 Score=75.83 Aligned_cols=106 Identities=16% Similarity=0.108 Sum_probs=67.8
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCC-------cEEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhc--cc
Q 008604 148 KKVAILGG-GLMGSGIATALILSNY-------PVILKEVNEKF--LEAGIGRVRANLQSRVKKGKMTQEKFEKTIS--LL 215 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~-------~V~l~d~~~~~--~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~--~i 215 (560)
.||+|||+ |.+|.++|..++..|. +++|+|++++. ++.-.-.+ .... + ..+. .+
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl--------~~~~-~-----~~~~~~~i 68 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMEL--------EDCA-F-----PLLAEIVI 68 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhh--------hhcc-c-----cccCceEE
Confidence 59999999 9999999999999887 89999996432 22111000 0000 0 0011 23
Q ss_pred ccccCcccccCCCEEEEecc--------------CChHHHHHHHHHHHhhcCCCceeeccCCcccHHHH
Q 008604 216 TGVLDYESFKDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLI 270 (560)
Q Consensus 216 ~~~~~~~~~~~aDlVIeav~--------------e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~~l 270 (560)
. +.+++++++||+||.+.- .|..+-+++..++.+++++++++...| -|+.-+
T Consensus 69 ~-~~~~~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~ 134 (322)
T cd01338 69 T-DDPNVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG--NPCNTN 134 (322)
T ss_pred e-cCcHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec--CcHHHH
Confidence 2 456899999999998761 123456667777888886666655443 444433
No 251
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=97.52 E-value=0.00018 Score=73.39 Aligned_cols=92 Identities=22% Similarity=0.373 Sum_probs=61.0
Q ss_pred EEEEEcC-ccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc-c-cC--c
Q 008604 149 KVAILGG-GLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-V-LD--Y 221 (560)
Q Consensus 149 ~V~VIG~-G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~-~~--~ 221 (560)
||+|||+ |.+|+.+|..++..|+ +++++|+++ ....+++ +.... ....+.. + .+ +
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~-a~g~a~D---------L~~~~--------~~~~i~~~~~~~~~~ 62 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG-AAGVAAD---------LSHIP--------TAASVKGFSGEEGLE 62 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC-CcEEEch---------hhcCC--------cCceEEEecCCCchH
Confidence 6999999 9999999999998876 899999987 2111111 11110 0113442 2 23 7
Q ss_pred ccccCCCEEEEec--------------cCChHHHHHHHHHHHhhcCCCceee
Q 008604 222 ESFKDVDMVIEAI--------------IENVSLKQQIFADLEKYCPPHCILA 259 (560)
Q Consensus 222 ~~~~~aDlVIeav--------------~e~~~~k~~~~~~l~~~~~~~~ii~ 259 (560)
+++++||+||.+. ..+..+-+++...+.++. |++++.
T Consensus 63 ~~~~daDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~-p~~iii 113 (312)
T TIGR01772 63 NALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESC-PKAMIL 113 (312)
T ss_pred HHcCCCCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhC-CCeEEE
Confidence 8999999999886 234446666667788875 555543
No 252
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.52 E-value=0.00019 Score=64.11 Aligned_cols=73 Identities=21% Similarity=0.219 Sum_probs=51.1
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccc
Q 008604 147 VKKVAILGGGLMGSGIATALILSNYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (560)
Q Consensus 147 ~~~V~VIG~G~mG~~iA~~l~~~G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 224 (560)
-++|.|||+|.||++++..|+..|.+ |++++|+.++++...+.+ ....+ .+...+++ +.+
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~--------~~~~~----------~~~~~~~~~~~~ 73 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF--------GGVNI----------EAIPLEDLEEAL 73 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH--------TGCSE----------EEEEGGGHCHHH
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc--------Ccccc----------ceeeHHHHHHHH
Confidence 47999999999999999999999987 999999998876544321 00000 01112222 346
Q ss_pred cCCCEEEEeccCC
Q 008604 225 KDVDMVIEAIIEN 237 (560)
Q Consensus 225 ~~aDlVIeav~e~ 237 (560)
.++|+||.|.+-.
T Consensus 74 ~~~DivI~aT~~~ 86 (135)
T PF01488_consen 74 QEADIVINATPSG 86 (135)
T ss_dssp HTESEEEE-SSTT
T ss_pred hhCCeEEEecCCC
Confidence 7899999998744
No 253
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=97.51 E-value=0.00014 Score=77.09 Aligned_cols=99 Identities=23% Similarity=0.245 Sum_probs=73.4
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (560)
++|+|||.|.+|+.+|..+...|.+|+.||+++... .+ ......++ +.++.
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~----------------~~------------~~~~~~~l~ell~~ 203 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP----------------LG------------NARQVGSLEELLAQ 203 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccc----------------cC------------CceecCCHHHHHhh
Confidence 699999999999999999999999999999864210 00 01112244 44789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcc---cHHHHHhhcc
Q 008604 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI---DLNLIGERTY 275 (560)
Q Consensus 227 aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl---~i~~la~~~~ 275 (560)
||+|+.++|-+.+.+.-+=++..+.++++++++ |+|-- .-..+.+++.
T Consensus 204 sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lI-N~aRG~~vde~aL~~aL~ 254 (409)
T PRK11790 204 SDVVSLHVPETPSTKNMIGAEELALMKPGAILI-NASRGTVVDIDALADALK 254 (409)
T ss_pred CCEEEEcCCCChHHhhccCHHHHhcCCCCeEEE-ECCCCcccCHHHHHHHHH
Confidence 999999999888877766677778899999875 77743 3446666654
No 254
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=97.50 E-value=0.00066 Score=70.94 Aligned_cols=102 Identities=19% Similarity=0.210 Sum_probs=66.8
Q ss_pred ceEEEEEcC-ccchHHHHHHHHhCCC-------cEEEE--eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccc
Q 008604 147 VKKVAILGG-GLMGSGIATALILSNY-------PVILK--EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLT 216 (560)
Q Consensus 147 ~~~V~VIG~-G~mG~~iA~~l~~~G~-------~V~l~--d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~ 216 (560)
.-||+|||+ |.+|..+|..++..|+ .++|+ |++.+.++.-.-.+..... ..+..++
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~--------------~~~~~v~ 109 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLY--------------PLLREVS 109 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhh--------------hhcCceE
Confidence 469999999 9999999999998875 24445 8888776543222211110 1112233
Q ss_pred -cccCcccccCCCEEEEecc--------------CChHHHHHHHHHHHhhcCCCceeeccC
Q 008604 217 -GVLDYESFKDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNT 262 (560)
Q Consensus 217 -~~~~~~~~~~aDlVIeav~--------------e~~~~k~~~~~~l~~~~~~~~ii~snt 262 (560)
.+.+++++++||+||.+.- .+..+-+++...|.++.++++++..-|
T Consensus 110 i~~~~y~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVs 170 (387)
T TIGR01757 110 IGIDPYEVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVG 170 (387)
T ss_pred EecCCHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcC
Confidence 2457899999999998761 133456666677888887888665433
No 255
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=97.48 E-value=0.00024 Score=68.53 Aligned_cols=104 Identities=27% Similarity=0.329 Sum_probs=62.7
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCc-EEEEeCC---HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccc----
Q 008604 148 KKVAILGGGLMGSGIATALILSNYP-VILKEVN---EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL---- 219 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~-V~l~d~~---~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~---- 219 (560)
.+|+|||+|.+|+.+|..|++.|.. ++++|.+ .+.+.+- + .... +-|....+.....+.++.+..
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq---~--~~~~--dvG~~Ka~~a~~~l~~lnp~v~v~~ 101 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQ---Q--YFIS--QIGMPKVEALKENLLEINPFVEIEA 101 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEecccccccc---E--eehh--hCCChHHHHHHHHHHHHCCCCEEEE
Confidence 5899999999999999999999985 9999988 3333211 0 0000 112211222222222221111
Q ss_pred --------Cc-ccccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceee
Q 008604 220 --------DY-ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILA 259 (560)
Q Consensus 220 --------~~-~~~~~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~ 259 (560)
+. +.+.++|+||+| .++.+.+..+.....+......|.+
T Consensus 102 ~~~~i~~~~~~~~~~~~DvVI~a-~D~~~~r~~l~~~~~~~~~~p~I~~ 149 (212)
T PRK08644 102 HNEKIDEDNIEELFKDCDIVVEA-FDNAETKAMLVETVLEHPGKKLVAA 149 (212)
T ss_pred EeeecCHHHHHHHHcCCCEEEEC-CCCHHHHHHHHHHHHHhCCCCEEEe
Confidence 11 236789999999 5788888888877666533333433
No 256
>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]
Probab=97.46 E-value=0.00014 Score=67.01 Aligned_cols=194 Identities=14% Similarity=0.148 Sum_probs=102.2
Q ss_pred ceEEEEE-c-CccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHH-HHHHHHcCCCCHHHHHhhhcccccccCccc
Q 008604 147 VKKVAIL-G-GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRAN-LQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (560)
Q Consensus 147 ~~~V~VI-G-~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~-~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (560)
..++++| | .-.+|.+|++.|+++|++|.+.|++.+.+++....+... -......+.-.+.+++..+... ...
T Consensus 13 ~sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A~ata~~L~g~~~h~aF~~DVS~a~~v~~~l~e~-----~k~ 87 (256)
T KOG1200|consen 13 MSKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATAGDLGGYGDHSAFSCDVSKAHDVQNTLEEM-----EKS 87 (256)
T ss_pred hcceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhHHHHHhhcCCCCccceeeeccCcHHHHHHHHHHH-----HHh
Confidence 3566666 4 456899999999999999999999988766654433221 0011122222233333322211 123
Q ss_pred ccCCCEEEEeccCC-----hHHHHHHHHHHHhhcCCCceeeccCCcccHHHHHhhc-----cCCCcEeecccCCCCCCCC
Q 008604 224 FKDVDMVIEAIIEN-----VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERT-----YSKDRIVGAHFFSPAHVMP 293 (560)
Q Consensus 224 ~~~aDlVIeav~e~-----~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~~la~~~-----~~~~r~~g~hf~~P~~~~~ 293 (560)
+...+++++|.--. +..|++-|.++...--.++.+ +++.+... .+|-+++...-
T Consensus 88 ~g~psvlVncAGItrD~~Llrmkq~qwd~vi~vNL~gvfl--------~tqaa~r~~~~~~~~~~sIiNvsS-------- 151 (256)
T KOG1200|consen 88 LGTPSVLVNCAGITRDGLLLRMKQEQWDSVIAVNLTGVFL--------VTQAAVRAMVMNQQQGLSIINVSS-------- 151 (256)
T ss_pred cCCCcEEEEcCccccccceeeccHHHHHHHHHhhchhhHH--------HHHHHHHHHHHhcCCCceEEeehh--------
Confidence 56678888886321 124555555444332222222 22222111 12223322211
Q ss_pred eEEEEe------CCCCcHHHHHHHHHHHHhcCCceEEecC-ccccchhchHHHH----HHHHHHHHHcCC--CHHHHHHH
Q 008604 294 LLEIVR------TNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGFAVNRMFFPY----TQAAFLLVERGT--DLYLIDRA 360 (560)
Q Consensus 294 lvEiv~------g~~t~~e~~~~~~~l~~~lGk~~i~v~d-~~G~i~nri~~~~----~~ea~~l~~~G~--~~~dID~a 360 (560)
.|-.+. ...++.-++...+..++.+++.-|.|+. .||||...|-..+ +.+.+.+++.|- ++|||..+
T Consensus 152 IVGkiGN~GQtnYAAsK~GvIgftktaArEla~knIrvN~VlPGFI~tpMT~~mp~~v~~ki~~~iPmgr~G~~EevA~~ 231 (256)
T KOG1200|consen 152 IVGKIGNFGQTNYAASKGGVIGFTKTAARELARKNIRVNVVLPGFIATPMTEAMPPKVLDKILGMIPMGRLGEAEEVANL 231 (256)
T ss_pred hhcccccccchhhhhhcCceeeeeHHHHHHHhhcCceEeEeccccccChhhhhcCHHHHHHHHccCCccccCCHHHHHHH
Confidence 111111 0123344555566777888888999985 7999998876543 344455555552 55555544
Q ss_pred H
Q 008604 361 I 361 (560)
Q Consensus 361 ~ 361 (560)
+
T Consensus 232 V 232 (256)
T KOG1200|consen 232 V 232 (256)
T ss_pred H
Confidence 4
No 257
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=97.45 E-value=0.00045 Score=70.19 Aligned_cols=88 Identities=18% Similarity=0.248 Sum_probs=59.9
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (560)
++|+|||.|.+|..++..+...|.+|+++|+++++.+.+. +.|.. .+. ..++ +.+.+
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~-----------~~G~~----------~~~-~~~l~~~l~~ 210 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARIT-----------EMGLS----------PFH-LSELAEEVGK 210 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----------HcCCe----------eec-HHHHHHHhCC
Confidence 6899999999999999999999999999999987654322 11210 000 0122 34678
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccC
Q 008604 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (560)
Q Consensus 227 aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~snt 262 (560)
+|+||+++|..+ +-++..+.++++++|....
T Consensus 211 aDiVI~t~p~~~-----i~~~~l~~~~~g~vIIDla 241 (296)
T PRK08306 211 IDIIFNTIPALV-----LTKEVLSKMPPEALIIDLA 241 (296)
T ss_pred CCEEEECCChhh-----hhHHHHHcCCCCcEEEEEc
Confidence 999999998421 2233445567777775433
No 258
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=97.45 E-value=0.00054 Score=72.15 Aligned_cols=124 Identities=15% Similarity=0.081 Sum_probs=82.7
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccCCCchhhh-----cccC-----------------CCCC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATL-----YKTD-----------------KIEP 58 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~~p~~~~~-----~~~~-----------------~~~~ 58 (560)
|+|||++++|++|+++||+|++||++++ +.+.+.+.++... +..... .... -++.
T Consensus 201 L~LTG~~i~a~eA~~~GLa~~~v~~~~l-~~l~~~l~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~F~~ 277 (407)
T PLN02851 201 LALTGQKLNGVEMIACGLATHYCLNARL-PLIEERLGKLLTD--DPAVIEDSLAQYGDLVYPDKSSVLHKIETIDKCFGH 277 (407)
T ss_pred HHHhCCcCCHHHHHHCCCceeecCHhhH-HHHHHHHHhhccC--CHHHHHHHHHHhccccCCCcccHHHHHHHHHHHhCC
Confidence 5789999999999999999999999887 5566666554332 100100 0000 0010
Q ss_pred chhHHHHHH------------HHHHHHHH-hCCCCCcHHHHHHHHHHhhhCChHHHHHHHHHHHhHHh---cCHHHHHHH
Q 008604 59 LGEAREIFK------------FARAQARK-QAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLL---RSETCKSLV 122 (560)
Q Consensus 59 ~~~~~~~~~------------~~~~~~~~-~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~l~---~s~~~~~~~ 122 (560)
. ....+++ .+++..+. ..++|.+...+.+.++++..+++++.|..|.+.-..++ .++|+.|||
T Consensus 278 ~-sv~~I~~~L~~~~~~~~~~wa~~~~~~l~~~SP~Sl~vt~~~~~~~~~~sl~e~l~~E~~l~~~~~~~~~~~DF~EGV 356 (407)
T PLN02851 278 D-TVEEIIEALENEAASSYDEWCKKALKKIKEASPLSLKVTLQSIREGRFQTLDQCLAREYRISLCGVSKWVSGDFCEGV 356 (407)
T ss_pred C-CHHHHHHHHHhcccccchHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCccchHHHHH
Confidence 0 0011111 12222222 24567788899999999999999999999999988887 489999999
Q ss_pred HHHHhc
Q 008604 123 HIFFAQ 128 (560)
Q Consensus 123 ~aF~~k 128 (560)
+|-+-.
T Consensus 357 RA~LID 362 (407)
T PLN02851 357 RARLVD 362 (407)
T ss_pred HHHhcC
Confidence 987753
No 259
>PRK06487 glycerate dehydrogenase; Provisional
Probab=97.44 E-value=0.00073 Score=69.33 Aligned_cols=107 Identities=18% Similarity=0.162 Sum_probs=77.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (560)
++|+|||.|.+|+.+|..+..-|.+|+.||+..... . . . ..++ +.++.
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~~-----------------~-~------------~-~~~l~ell~~ 197 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRPA-----------------R-P------------D-RLPLDELLPQ 197 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCcc-----------------c-c------------c-ccCHHHHHHh
Confidence 699999999999999999998899999999863210 0 0 0 0133 34789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCc---ccHHHHHhhccC-CCcEeecccC
Q 008604 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTYS-KDRIVGAHFF 286 (560)
Q Consensus 227 aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSs---l~i~~la~~~~~-~~r~~g~hf~ 286 (560)
||+|+.++|-+.+.+.-+=++..+.++++++++ |+|- +.-..+.+++.. .-.-.++-.|
T Consensus 198 sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lI-N~aRG~vVde~AL~~AL~~g~i~gAaLDVf 260 (317)
T PRK06487 198 VDALTLHCPLTEHTRHLIGARELALMKPGALLI-NTARGGLVDEQALADALRSGHLGGAATDVL 260 (317)
T ss_pred CCEEEECCCCChHHhcCcCHHHHhcCCCCeEEE-ECCCccccCHHHHHHHHHcCCeeEEEeecC
Confidence 999999999888877777777888899999885 7774 334566666642 2333444444
No 260
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=97.42 E-value=0.00042 Score=75.61 Aligned_cols=69 Identities=14% Similarity=0.145 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcCCChhHHHHHHHHhcCCCCCCCcHHHHHHHhC-HHHHHHHHHHHHHH
Q 008604 459 EKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRGGIMFWADSLG-SKYIYSRLEEWSSL 528 (560)
Q Consensus 459 ~~~i~~r~l~~~~~ea~~~l~egv~~~~~diD~~~~~g~g~p~~~gGp~~~~d~~G-~~~~~~~~~~~~~~ 528 (560)
+..+.||++.++++||+.++++|++ ++++||.++..|+|+++..-|||...|..| .+.+.+.++++...
T Consensus 184 ~gfi~nrl~~a~~~EA~~L~~~g~~-s~~~id~~~~~g~g~~~~~~Gpf~~~dl~g~~~g~~~~~~~~~~~ 253 (495)
T PRK07531 184 DAFVGDRLLEALWREALWLVKDGIA-TTEEIDDVIRYSFGLRWAQMGLFETYRIAGGEAGMRHFLAQFGPC 253 (495)
T ss_pred cchhHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHhhccCCCccccchHHHHHhcCcHHHHHHHHHHhchh
Confidence 4589999999999999999999999 899999999999988755569999999988 45566666665443
No 261
>PRK06932 glycerate dehydrogenase; Provisional
Probab=97.41 E-value=0.00075 Score=69.15 Aligned_cols=108 Identities=17% Similarity=0.208 Sum_probs=77.1
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (560)
++|+|||.|.+|+.+|..+..-|.+|+.||++.... ...+ ..++ +.++.
T Consensus 148 ktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~--------------~~~~----------------~~~l~ell~~ 197 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASV--------------CREG----------------YTPFEEVLKQ 197 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCcccc--------------cccc----------------cCCHHHHHHh
Confidence 699999999999999999988899999999753210 0000 1233 44789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCc---ccHHHHHhhccC-CCcEeecccC
Q 008604 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTYS-KDRIVGAHFF 286 (560)
Q Consensus 227 aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSs---l~i~~la~~~~~-~~r~~g~hf~ 286 (560)
||+|+.++|-..+.+.-+=++..+.++++++++ |+|- +.-..+.+++.. .-+-.++--|
T Consensus 198 sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lI-N~aRG~~Vde~AL~~aL~~g~i~gAaLDV~ 260 (314)
T PRK06932 198 ADIVTLHCPLTETTQNLINAETLALMKPTAFLI-NTGRGPLVDEQALLDALENGKIAGAALDVL 260 (314)
T ss_pred CCEEEEcCCCChHHhcccCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHHHcCCccEEEEecC
Confidence 999999999888876666677888899999885 7764 344566666642 3333445444
No 262
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=97.40 E-value=0.00016 Score=75.39 Aligned_cols=109 Identities=14% Similarity=0.051 Sum_probs=71.6
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cccC
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD 226 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 226 (560)
++|||||.|.||+.+|..+...|.+|.+||+..... +. ... ..+++ .+++
T Consensus 117 ktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~-----------------~~-----------~~~-~~~L~ell~~ 167 (378)
T PRK15438 117 RTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADR-----------------GD-----------EGD-FRSLDELVQE 167 (378)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCccccc-----------------cc-----------ccc-cCCHHHHHhh
Confidence 699999999999999999999999999999753210 00 000 12343 4689
Q ss_pred CCEEEEeccCChH----HHHHHHHHHHhhcCCCceeeccCCccc---HHHHHhhcc-CCCcEeecccC
Q 008604 227 VDMVIEAIIENVS----LKQQIFADLEKYCPPHCILASNTSTID---LNLIGERTY-SKDRIVGAHFF 286 (560)
Q Consensus 227 aDlVIeav~e~~~----~k~~~~~~l~~~~~~~~ii~sntSsl~---i~~la~~~~-~~~r~~g~hf~ 286 (560)
||+|+..+|-..+ ...-+=++..+.++++++++ |+|--+ -..+.+.+. ....-.++--|
T Consensus 168 sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailI-N~aRG~vVDe~AL~~aL~~g~~~ga~LDV~ 234 (378)
T PRK15438 168 ADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILI-NACRGAVVDNTALLTCLNEGQKLSVVLDVW 234 (378)
T ss_pred CCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEE-ECCCchhcCHHHHHHHHHhCCCcEEEEecC
Confidence 9999999985443 33333345667789999885 777533 345555553 23334445444
No 263
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.39 E-value=0.00064 Score=69.24 Aligned_cols=92 Identities=22% Similarity=0.326 Sum_probs=60.9
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCC--cEEEEeCCHHHHH-HHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-c-C-
Q 008604 148 KKVAILGG-GLMGSGIATALILSNY--PVILKEVNEKFLE-AGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-L-D- 220 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~-~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~-~- 220 (560)
.||+|||+ |.+|+.+|..++..|+ +++++|++ .++ .+++ +.... ..-.+..+ . +
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alD---------L~~~~--------~~~~i~~~~~~~~ 61 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAAD---------LSHIN--------TPAKVTGYLGPEE 61 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehH---------hHhCC--------CcceEEEecCCCc
Confidence 38999999 9999999999998885 89999998 221 1110 11110 00134432 3 2
Q ss_pred -cccccCCCEEEEecc--------------CChHHHHHHHHHHHhhcCCCceee
Q 008604 221 -YESFKDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILA 259 (560)
Q Consensus 221 -~~~~~~aDlVIeav~--------------e~~~~k~~~~~~l~~~~~~~~ii~ 259 (560)
++++++||+||.+.- .|..+-+++...+.++.+ ++++.
T Consensus 62 ~y~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p-~a~vi 114 (310)
T cd01337 62 LKKALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACP-KALIL 114 (310)
T ss_pred hHHhcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEE
Confidence 799999999998761 234466666777888754 66554
No 264
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=97.39 E-value=0.0033 Score=62.88 Aligned_cols=153 Identities=15% Similarity=0.084 Sum_probs=102.4
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc--c
Q 008604 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES--F 224 (560)
Q Consensus 147 ~~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~--~ 224 (560)
..+|+|||.|.||.=+|..+.++|+.|...||++- +.+..+ ...+.. +++.+ -
T Consensus 52 tl~IaIIGfGnmGqflAetli~aGh~li~hsRsdy--ssaa~~--------yg~~~f---------------t~lhdlce 106 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSDY--SSAAEK--------YGSAKF---------------TLLHDLCE 106 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHhcCceeEecCcchh--HHHHHH--------hccccc---------------ccHHHHHh
Confidence 46899999999999999999999999999999872 112111 111111 11211 2
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHhh-cCCCceeeccCCccc--HHHHHhhccCCCcEeecccCCCCC-------CCCe
Q 008604 225 KDVDMVIEAIIENVSLKQQIFADLEKY-CPPHCILASNTSTID--LNLIGERTYSKDRIVGAHFFSPAH-------VMPL 294 (560)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~~~~~l~~~-~~~~~ii~sntSsl~--i~~la~~~~~~~r~~g~hf~~P~~-------~~~l 294 (560)
...|+|+.|+. ..-...+++..-.. .+.+||+...+|--. .+.+..-++..-.++.+|++..|. ..|+
T Consensus 107 rhpDvvLlcts--ilsiekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPksvnh~wqglpf 184 (480)
T KOG2380|consen 107 RHPDVVLLCTS--ILSIEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPF 184 (480)
T ss_pred cCCCEEEEEeh--hhhHHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCCcCCCccccCce
Confidence 56899999985 22233444444333 567899988888643 444555667777889999985332 2366
Q ss_pred EEEE--eC-CCCcHHHHHHHHHHHHhcCCceEEec
Q 008604 295 LEIV--RT-NQTSPQVIVDLLDIGKKIKKTPIVVG 326 (560)
Q Consensus 295 vEiv--~g-~~t~~e~~~~~~~l~~~lGk~~i~v~ 326 (560)
|-+- .| ....++..+.+..++...|...|.+.
T Consensus 185 VydkvRig~~~~r~ercE~fleIf~cegckmVemS 219 (480)
T KOG2380|consen 185 VYDKVRIGYAASRPERCEFFLEIFACEGCKMVEMS 219 (480)
T ss_pred EEEEeeccccccchHHHHHHHHHHHhcCCeEEEEE
Confidence 6432 22 23458999999999999998888764
No 265
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=97.37 E-value=0.00096 Score=62.27 Aligned_cols=74 Identities=23% Similarity=0.313 Sum_probs=46.1
Q ss_pred EEEEEcCccchHHH--HHHHHhC----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-
Q 008604 149 KVAILGGGLMGSGI--ATALILS----NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY- 221 (560)
Q Consensus 149 ~V~VIG~G~mG~~i--A~~l~~~----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~- 221 (560)
||+|||+|..-.+. -..+... +.+|+++|+|+++++....-.+.. ++.-..+ -++..++|.
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~----~~~~~~~--------~~v~~ttd~~ 68 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRM----VEEAGAD--------LKVEATTDRR 68 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHH----HHHCTTS--------SEEEEESSHH
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHH----HHhcCCC--------eEEEEeCCHH
Confidence 79999999875553 2333332 458999999999987544332222 2221111 245667787
Q ss_pred ccccCCCEEEEec
Q 008604 222 ESFKDVDMVIEAI 234 (560)
Q Consensus 222 ~~~~~aDlVIeav 234 (560)
+++.+||+||.++
T Consensus 69 eAl~gADfVi~~i 81 (183)
T PF02056_consen 69 EALEGADFVINQI 81 (183)
T ss_dssp HHHTTESEEEE--
T ss_pred HHhCCCCEEEEEe
Confidence 6799999999987
No 266
>PLN00106 malate dehydrogenase
Probab=97.34 E-value=0.00052 Score=70.32 Aligned_cols=92 Identities=21% Similarity=0.314 Sum_probs=60.6
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc-ccC---
Q 008604 148 KKVAILGG-GLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLD--- 220 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~--- 220 (560)
.||+|||+ |.+|+.+|..++..|+ +++++|+++ ....+++ +.... . .-.+.. +.+
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~-~~g~a~D---------l~~~~-------~-~~~i~~~~~~~d~ 80 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN-TPGVAAD---------VSHIN-------T-PAQVRGFLGDDQL 80 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC-CCeeEch---------hhhCC-------c-CceEEEEeCCCCH
Confidence 59999999 9999999999998775 899999987 1111110 00000 0 012221 223
Q ss_pred cccccCCCEEEEec--------------cCChHHHHHHHHHHHhhcCCCce
Q 008604 221 YESFKDVDMVIEAI--------------IENVSLKQQIFADLEKYCPPHCI 257 (560)
Q Consensus 221 ~~~~~~aDlVIeav--------------~e~~~~k~~~~~~l~~~~~~~~i 257 (560)
++++++||+||.+. +.|..+-+++.+.+.++.+...+
T Consensus 81 ~~~l~~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aiv 131 (323)
T PLN00106 81 GDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALV 131 (323)
T ss_pred HHHcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEE
Confidence 57899999999876 23455677777888888754443
No 267
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.32 E-value=0.0011 Score=70.02 Aligned_cols=83 Identities=20% Similarity=0.187 Sum_probs=59.4
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (560)
++|+|+|+|.+|..++..+...|.+|+++|+++.+++.+. ..|.. .....+.+.++
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~-----------~~G~~-------------~~~~~e~v~~a 258 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAA-----------MEGYE-------------VMTMEEAVKEG 258 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHH-----------hcCCE-------------EccHHHHHcCC
Confidence 5899999999999999999999999999999998876543 22320 00011345689
Q ss_pred CEEEEeccCChHHHHHHHH-HHHhhcCCCceee
Q 008604 228 DMVIEAIIENVSLKQQIFA-DLEKYCPPHCILA 259 (560)
Q Consensus 228 DlVIeav~e~~~~k~~~~~-~l~~~~~~~~ii~ 259 (560)
|+||+|.... .++. .....++++++++
T Consensus 259 DVVI~atG~~-----~~i~~~~l~~mk~Ggilv 286 (413)
T cd00401 259 DIFVTTTGNK-----DIITGEHFEQMKDGAIVC 286 (413)
T ss_pred CEEEECCCCH-----HHHHHHHHhcCCCCcEEE
Confidence 9999997532 2333 3455678888775
No 268
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.32 E-value=0.00032 Score=72.92 Aligned_cols=81 Identities=21% Similarity=0.252 Sum_probs=54.9
Q ss_pred ceEEEEEcCccchHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 008604 147 VKKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (560)
Q Consensus 147 ~~~V~VIG~G~mG~~iA~~l~~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (560)
+++|.|||+|.+|+.+|..|+++| .+|++.||+.++++++...+.. .++.-.++..+.++. .+.++
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~----~v~~~~vD~~d~~al---------~~li~ 67 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGG----KVEALQVDAADVDAL---------VALIK 67 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccc----cceeEEecccChHHH---------HHHHh
Confidence 468999999999999999999999 9999999999988776432111 000000000000000 13467
Q ss_pred CCCEEEEeccCChHH
Q 008604 226 DVDMVIEAIIENVSL 240 (560)
Q Consensus 226 ~aDlVIeav~e~~~~ 240 (560)
+.|+||.|+|.....
T Consensus 68 ~~d~VIn~~p~~~~~ 82 (389)
T COG1748 68 DFDLVINAAPPFVDL 82 (389)
T ss_pred cCCEEEEeCCchhhH
Confidence 889999999976554
No 269
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.30 E-value=0.0011 Score=66.25 Aligned_cols=67 Identities=28% Similarity=0.355 Sum_probs=47.5
Q ss_pred eEEEEEcCccchHHHHHHHHhC--CCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-
Q 008604 148 KKVAILGGGLMGSGIATALILS--NYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~--G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (560)
.||+|||+|.||..++..+.+. +++ +.++|+++++.+...+ ..+ ....+++++
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~----------~~~-------------~~~~~~~~el 58 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLAS----------KTG-------------AKACLSIDEL 58 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHH----------hcC-------------CeeECCHHHH
Confidence 5899999999999999999876 466 5579999887654321 011 112344443
Q ss_pred ccCCCEEEEeccCC
Q 008604 224 FKDVDMVIEAIIEN 237 (560)
Q Consensus 224 ~~~aDlVIeav~e~ 237 (560)
+.++|+|++|++.+
T Consensus 59 l~~~DvVvi~a~~~ 72 (265)
T PRK13304 59 VEDVDLVVECASVN 72 (265)
T ss_pred hcCCCEEEEcCChH
Confidence 47899999999743
No 270
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.29 E-value=0.00074 Score=69.26 Aligned_cols=89 Identities=19% Similarity=0.184 Sum_probs=57.6
Q ss_pred ceEEEEEcCccchHHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 008604 147 VKKVAILGGGLMGSGIATALIL--SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (560)
Q Consensus 147 ~~~V~VIG~G~mG~~iA~~l~~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (560)
.++|+|||+|.||..++..++. ...+|++|++++++.++..+.+.+ .|. .+....+. +.
T Consensus 125 ~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~-------~g~-----------~~~~~~~~~~a 186 (314)
T PRK06141 125 ASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRA-------QGF-----------DAEVVTDLEAA 186 (314)
T ss_pred CceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh-------cCC-----------ceEEeCCHHHH
Confidence 4689999999999999975554 457899999999987765433211 110 12223343 46
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceee
Q 008604 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILA 259 (560)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~ 259 (560)
+.+||+||.|.+... .++. .+.++++++|.
T Consensus 187 v~~aDIVi~aT~s~~----pvl~--~~~l~~g~~i~ 216 (314)
T PRK06141 187 VRQADIISCATLSTE----PLVR--GEWLKPGTHLD 216 (314)
T ss_pred HhcCCEEEEeeCCCC----CEec--HHHcCCCCEEE
Confidence 789999988887442 2221 13456777554
No 271
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=97.28 E-value=0.0018 Score=68.92 Aligned_cols=75 Identities=23% Similarity=0.344 Sum_probs=49.9
Q ss_pred eEEEEEcCccc-hHHHHHHHHhC-----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 008604 148 KKVAILGGGLM-GSGIATALILS-----NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (560)
Q Consensus 148 ~~V~VIG~G~m-G~~iA~~l~~~-----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (560)
.||+|||+|.- ...+...+++. +-+|+++|+++++++... ....+.++....+ -++..|+|.
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~----~l~~~~~~~~g~~--------~~v~~ttD~ 68 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIIL----TIAKRYVEEVGAD--------IKFEKTMDL 68 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHH----HHHHHHHHhhCCC--------eEEEEeCCH
Confidence 48999999874 44555555543 578999999999887632 2222223221111 146667787
Q ss_pred -ccccCCCEEEEec
Q 008604 222 -ESFKDVDMVIEAI 234 (560)
Q Consensus 222 -~~~~~aDlVIeav 234 (560)
+++.+||+||.++
T Consensus 69 ~~Al~gADfVi~~i 82 (425)
T cd05197 69 EDAIIDADFVINQF 82 (425)
T ss_pred HHHhCCCCEEEEee
Confidence 6799999999987
No 272
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=97.27 E-value=0.0024 Score=61.62 Aligned_cols=81 Identities=26% Similarity=0.332 Sum_probs=53.9
Q ss_pred EEEEE-cC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 008604 149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (560)
Q Consensus 149 ~V~VI-G~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (560)
||++| |+ ..+|.++|..|+.+|++|++..|..+++++...++.+.-...+.-+..+.++++..+..+. +.+.+
T Consensus 7 kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~-----~~~g~ 81 (246)
T COG4221 7 KVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGAGAALALALDVTDRAAVEAAIEALP-----EEFGR 81 (246)
T ss_pred cEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHHH-----HhhCc
Confidence 55555 77 7789999999999999999999999999887666542000111223333344433333222 45778
Q ss_pred CCEEEEec
Q 008604 227 VDMVIEAI 234 (560)
Q Consensus 227 aDlVIeav 234 (560)
.|++|++.
T Consensus 82 iDiLvNNA 89 (246)
T COG4221 82 IDILVNNA 89 (246)
T ss_pred ccEEEecC
Confidence 89999876
No 273
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=97.27 E-value=0.00086 Score=64.06 Aligned_cols=39 Identities=28% Similarity=0.425 Sum_probs=35.6
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~ 186 (560)
++|+|+|.|.||..+|+.|.+.|++|+++|+++++++..
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~ 67 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARA 67 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence 589999999999999999999999999999998776543
No 274
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=97.27 E-value=0.00065 Score=69.79 Aligned_cols=105 Identities=17% Similarity=0.199 Sum_probs=64.9
Q ss_pred EEEEEcC-ccchHHHHHHHHhCCC-------cEEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCCHHHHH-hhhccccc
Q 008604 149 KVAILGG-GLMGSGIATALILSNY-------PVILKEVNEKF--LEAGIGRVRANLQSRVKKGKMTQEKFE-KTISLLTG 217 (560)
Q Consensus 149 ~V~VIG~-G~mG~~iA~~l~~~G~-------~V~l~d~~~~~--~~~~~~~i~~~~~~~~~~g~~~~~~~~-~~~~~i~~ 217 (560)
||+|||+ |.+|+.+|..++..|+ +++++|+++.. ++. . ... + .+.. .....+..
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g-~-----------~~D-l--~d~~~~~~~~~~~ 65 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEG-V-----------VME-L--MDCAFPLLDGVVP 65 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccce-e-----------Eee-h--hcccchhcCceec
Confidence 6899999 9999999999998654 59999996542 211 0 000 0 0001 11122333
Q ss_pred c-cCcccccCCCEEEEecc--------------CChHHHHHHHHHHHhhcCCCceeeccCCcccHHHH
Q 008604 218 V-LDYESFKDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLI 270 (560)
Q Consensus 218 ~-~~~~~~~~aDlVIeav~--------------e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~~l 270 (560)
+ .+++++++||+||.+.- .+..+-+++..++.+++++++++..-| -|+.-+
T Consensus 66 ~~~~~~~~~~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvs--NPvDv~ 131 (324)
T TIGR01758 66 THDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVG--NPANTN 131 (324)
T ss_pred cCChHHHhCCCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHH
Confidence 3 34789999999998761 122345666677888876677665433 444433
No 275
>PLN02306 hydroxypyruvate reductase
Probab=97.26 E-value=0.00062 Score=71.51 Aligned_cols=116 Identities=16% Similarity=0.171 Sum_probs=74.6
Q ss_pred eEEEEEcCccchHHHHHHHH-hCCCcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cc
Q 008604 148 KKVAILGGGLMGSGIATALI-LSNYPVILKEVNEKF-LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SF 224 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~-~~G~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~ 224 (560)
++|+|||.|.+|+.+|..+. .-|.+|+.||++... .+........ .....+.. . .......+++ .+
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~---~l~~~~~~---~-----~~~~~~~~L~ell 234 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQ---FLKANGEQ---P-----VTWKRASSMEEVL 234 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcc---cccccccc---c-----ccccccCCHHHHH
Confidence 69999999999999999986 679999999987532 1110000000 00000000 0 0011123554 47
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCc---ccHHHHHhhcc
Q 008604 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY 275 (560)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSs---l~i~~la~~~~ 275 (560)
+.||+|+.++|-+.+.+.-+=++..+.++++++++ |++- +.-..+.+++.
T Consensus 235 ~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lI-N~aRG~lVDe~AL~~AL~ 287 (386)
T PLN02306 235 READVISLHPVLDKTTYHLINKERLALMKKEAVLV-NASRGPVIDEVALVEHLK 287 (386)
T ss_pred hhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHHH
Confidence 89999999999888777777777888899999885 7774 33445666653
No 276
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=97.26 E-value=0.00052 Score=70.28 Aligned_cols=101 Identities=20% Similarity=0.107 Sum_probs=75.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (560)
++|+|||.|.+|..+|..+..-|.+|..||+++.. + .. +.+ ...... + +.+++
T Consensus 147 ktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~~-~-~~-----------~~~------------~~~y~~-l~ell~~ 200 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPNP-E-AE-----------KEL------------GARYVD-LDELLAE 200 (324)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCCh-H-HH-----------hhc------------Cceecc-HHHHHHh
Confidence 79999999999999999999789999999998641 1 00 000 011122 3 45789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCccc---HHHHHhhcc
Q 008604 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID---LNLIGERTY 275 (560)
Q Consensus 227 aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~---i~~la~~~~ 275 (560)
+|+|+..+|-..+...-+=++..+.++++++|+ ||+--+ -..+.+++.
T Consensus 201 sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lV-NtaRG~~VDe~ALi~AL~ 251 (324)
T COG1052 201 SDIISLHCPLTPETRHLINAEELAKMKPGAILV-NTARGGLVDEQALIDALK 251 (324)
T ss_pred CCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHHH
Confidence 999999999988888777788888999999874 887533 345555553
No 277
>PTZ00325 malate dehydrogenase; Provisional
Probab=97.24 E-value=0.00085 Score=68.68 Aligned_cols=94 Identities=19% Similarity=0.279 Sum_probs=57.8
Q ss_pred cceEEEEEcC-ccchHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC--
Q 008604 146 RVKKVAILGG-GLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD-- 220 (560)
Q Consensus 146 ~~~~V~VIG~-G~mG~~iA~~l~~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-- 220 (560)
.+.||+|||+ |.+|+.+|..++..| .+++++|++.... .+++ + ... .. .-.+...++
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g-~a~D-l--------~~~-------~~-~~~v~~~td~~ 68 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPG-VAAD-L--------SHI-------DT-PAKVTGYADGE 68 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcc-cccc-h--------hhc-------Cc-CceEEEecCCC
Confidence 4679999999 999999999999665 5899999932111 0110 0 000 00 012332222
Q ss_pred --cccccCCCEEEEecc--------------CChHHHHHHHHHHHhhcCCCcee
Q 008604 221 --YESFKDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCIL 258 (560)
Q Consensus 221 --~~~~~~aDlVIeav~--------------e~~~~k~~~~~~l~~~~~~~~ii 258 (560)
++++++||+||.+.- .|..+-+.+...+.++.+ +.++
T Consensus 69 ~~~~~l~gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~-~~iv 121 (321)
T PTZ00325 69 LWEKALRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAP-KAIV 121 (321)
T ss_pred chHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEE
Confidence 688999999998762 122244556666777654 4444
No 278
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.23 E-value=0.00031 Score=72.14 Aligned_cols=105 Identities=20% Similarity=0.169 Sum_probs=66.0
Q ss_pred EEEEEcC-ccchHHHHHHHHhCCC-------cEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHH-hhhccccc
Q 008604 149 KVAILGG-GLMGSGIATALILSNY-------PVILKEVNE--KFLEAGIGRVRANLQSRVKKGKMTQEKFE-KTISLLTG 217 (560)
Q Consensus 149 ~V~VIG~-G~mG~~iA~~l~~~G~-------~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~-~~~~~i~~ 217 (560)
||+|||+ |.+|+.+|..++..|+ +++++|+++ +.++.-...+ .+.. ..+.....
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl---------------~d~~~~~~~~~~i 66 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMEL---------------QDCAFPLLKGVVI 66 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeeh---------------hhhcccccCCcEE
Confidence 7999999 9999999999998764 599999987 4332110000 0000 00111112
Q ss_pred -ccCcccccCCCEEEEecc--------------CChHHHHHHHHHHHhhcCCCceeeccCCcccHHHH
Q 008604 218 -VLDYESFKDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLI 270 (560)
Q Consensus 218 -~~~~~~~~~aDlVIeav~--------------e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~~l 270 (560)
+.+++++++||+||.+.- .+..+-+++..++.+++.++++++..| -|+.-+
T Consensus 67 ~~~~~~~~~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~ 132 (323)
T cd00704 67 TTDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG--NPANTN 132 (323)
T ss_pred ecChHHHhCCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC--CcHHHH
Confidence 346789999999998761 134466677778888875666655433 444433
No 279
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=97.23 E-value=0.0026 Score=67.89 Aligned_cols=75 Identities=24% Similarity=0.298 Sum_probs=50.2
Q ss_pred eEEEEEcCccc-hHHHHHHHHhC-----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 008604 148 KKVAILGGGLM-GSGIATALILS-----NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (560)
Q Consensus 148 ~~V~VIG~G~m-G~~iA~~l~~~-----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (560)
+||+|||+|.. +..+...+++. +-+|+++|+++++++... ....+.+++.... -++..|+|.
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~----~l~~~~~~~~g~~--------~~v~~Ttdr 68 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVA----EAVKILFKENYPE--------IKFVYTTDP 68 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHH----HHHHHHHHhhCCC--------eEEEEECCH
Confidence 48999999875 33455555433 578999999999987632 2233333321111 146667787
Q ss_pred -ccccCCCEEEEec
Q 008604 222 -ESFKDVDMVIEAI 234 (560)
Q Consensus 222 -~~~~~aDlVIeav 234 (560)
+++.+||+||.++
T Consensus 69 ~eAl~gADfVi~~i 82 (437)
T cd05298 69 EEAFTDADFVFAQI 82 (437)
T ss_pred HHHhCCCCEEEEEe
Confidence 6899999999987
No 280
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=97.22 E-value=0.0019 Score=64.70 Aligned_cols=70 Identities=24% Similarity=0.198 Sum_probs=49.1
Q ss_pred ceEEEEEcCccchHHHHHHHHhC--CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-
Q 008604 147 VKKVAILGGGLMGSGIATALILS--NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE- 222 (560)
Q Consensus 147 ~~~V~VIG~G~mG~~iA~~l~~~--G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~- 222 (560)
..||+|||+|.||..++..+.+. |++|+ ++|+++++.+...+. .|. ....++++
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~----------~g~------------~~~~~~~ee 63 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWG----------LRR------------PPPVVPLDQ 63 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHh----------cCC------------CcccCCHHH
Confidence 47899999999999999999863 78876 889998876543211 110 11123333
Q ss_pred cccCCCEEEEeccCCh
Q 008604 223 SFKDVDMVIEAIIENV 238 (560)
Q Consensus 223 ~~~~aDlVIeav~e~~ 238 (560)
.+.++|+|++|.|.+.
T Consensus 64 ll~~~D~Vvi~tp~~~ 79 (271)
T PRK13302 64 LATHADIVVEAAPASV 79 (271)
T ss_pred HhcCCCEEEECCCcHH
Confidence 3567999999999654
No 281
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=97.22 E-value=0.00048 Score=70.01 Aligned_cols=94 Identities=24% Similarity=0.282 Sum_probs=60.7
Q ss_pred EEcCccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCCE
Q 008604 152 ILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDM 229 (560)
Q Consensus 152 VIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDl 229 (560)
|||+|.+|+.+|..++..|. +++++|++++.++.-...+..... -.+ .-..+. +.+++++++||+
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~---~~~---------~~~~i~-~~~~~~~~daDi 67 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAAS---FLP---------TPKKIR-SGDYSDCKDADL 67 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhc---ccC---------CCeEEe-cCCHHHHCCCCE
Confidence 68999999999999998886 799999988765433222211110 000 001222 356899999999
Q ss_pred EEEeccC--------------ChHHHHHHHHHHHhhcCCCceee
Q 008604 230 VIEAIIE--------------NVSLKQQIFADLEKYCPPHCILA 259 (560)
Q Consensus 230 VIeav~e--------------~~~~k~~~~~~l~~~~~~~~ii~ 259 (560)
||.+.-. +..+-+++...+.++. ++++++
T Consensus 68 vVitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~-p~~~vi 110 (299)
T TIGR01771 68 VVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSG-FDGIFL 110 (299)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEE
Confidence 9987621 3335566667787775 455443
No 282
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=97.21 E-value=0.00091 Score=67.01 Aligned_cols=117 Identities=23% Similarity=0.263 Sum_probs=73.9
Q ss_pred ccceEEEEEcCccchHHHHHHHHhC--CC-----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc
Q 008604 145 RRVKKVAILGGGLMGSGIATALILS--NY-----PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG 217 (560)
Q Consensus 145 ~~~~~V~VIG~G~mG~~iA~~l~~~--G~-----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~ 217 (560)
+...||+|||+|++|+.||..+... ++ +|.+|-...+.-.+ ...+.+.+.+.-+.-+.-+. ...-.++..
T Consensus 19 ~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~-~~~L~eiIN~~heN~KYlpg--~~lP~NvvA 95 (372)
T KOG2711|consen 19 RDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGE-AEKLTEIINSRHENVKYLPG--IKLPENVVA 95 (372)
T ss_pred cCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCCh-hHHHHHHhccccccccccCC--ccCCCCeEe
Confidence 3457999999999999999988765 33 57777665443321 11111111111110000000 111234566
Q ss_pred ccCc-ccccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCccc
Q 008604 218 VLDY-ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID 266 (560)
Q Consensus 218 ~~~~-~~~~~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~ 266 (560)
++|+ +++.++|++|.++| .+....++++|..++++++..+|.+-++.
T Consensus 96 v~dl~ea~~dADilvf~vP--hQf~~~ic~~l~g~vk~~~~aISL~KG~e 143 (372)
T KOG2711|consen 96 VPDLVEAAKDADILVFVVP--HQFIPRICEQLKGYVKPGATAISLIKGVE 143 (372)
T ss_pred cchHHHHhccCCEEEEeCC--hhhHHHHHHHHhcccCCCCeEEEeeccee
Confidence 6776 66889999999999 55677899999999999998877654443
No 283
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.19 E-value=0.012 Score=59.26 Aligned_cols=195 Identities=17% Similarity=0.198 Sum_probs=119.3
Q ss_pred cceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc---
Q 008604 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE--- 222 (560)
Q Consensus 146 ~~~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~--- 222 (560)
+...|++||+++||..++...+.+|+.|.+|+|+..+.++.+.+- .+|. .|.+..+++
T Consensus 5 ~~~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flane--------ak~~-----------~i~ga~S~ed~v 65 (487)
T KOG2653|consen 5 PKADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANE--------AKGT-----------KIIGAYSLEDFV 65 (487)
T ss_pred cccchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHh--------hcCC-----------cccCCCCHHHHH
Confidence 357899999999999999999999999999999999888765331 1110 122223333
Q ss_pred -cccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccC-CcccHH--HHHhhccCCCcEeecccCC---CCCCCCeE
Q 008604 223 -SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT-STIDLN--LIGERTYSKDRIVGAHFFS---PAHVMPLL 295 (560)
Q Consensus 223 -~~~~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~snt-Ssl~i~--~la~~~~~~~r~~g~hf~~---P~~~~~lv 295 (560)
.++....||..|.-... ...++++|.+++.++-||+... |.++=+ ...+....---|+|+.-.- .+...|
T Consensus 66 ~klk~PR~iillvkAG~p-VD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GP-- 142 (487)
T KOG2653|consen 66 SKLKKPRVIILLVKAGAP-VDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGP-- 142 (487)
T ss_pred HhcCCCcEEEEEeeCCCc-HHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCC--
Confidence 24566777777744332 3567788999998877776543 334322 1111223333466655431 112222
Q ss_pred EEEeCCCCcHHHHHHHHHHHHhcCC-----ce--EEecC-ccccch----hchH---HHHHHHHHHHHHc--CCCHHHHH
Q 008604 296 EIVRTNQTSPQVIVDLLDIGKKIKK-----TP--IVVGN-CTGFAV----NRMF---FPYTQAAFLLVER--GTDLYLID 358 (560)
Q Consensus 296 Eiv~g~~t~~e~~~~~~~l~~~lGk-----~~--i~v~d-~~G~i~----nri~---~~~~~ea~~l~~~--G~~~~dID 358 (560)
.++|| .+++.-..++.++..+.- .| ..+++ ..|.++ |-|- +.++.|+..++.. |.+-++|-
T Consensus 143 SlMpG--g~~~Awp~ik~ifq~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia 220 (487)
T KOG2653|consen 143 SLMPG--GSKEAWPHIKDIFQKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIA 220 (487)
T ss_pred ccCCC--CChHHHHHHHHHHHHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHH
Confidence 13344 477777777777765421 22 33454 455432 4443 3568999988865 56888888
Q ss_pred HHHHhc
Q 008604 359 RAITKF 364 (560)
Q Consensus 359 ~a~~~~ 364 (560)
.++..|
T Consensus 221 ~vF~~W 226 (487)
T KOG2653|consen 221 EVFDDW 226 (487)
T ss_pred HHHHhh
Confidence 887654
No 284
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.12 E-value=0.00065 Score=68.39 Aligned_cols=68 Identities=18% Similarity=0.337 Sum_probs=52.5
Q ss_pred eEEEEEc-CccchHHHHHHHHhCCCcEEEEe-CCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 008604 148 KKVAILG-GGLMGSGIATALILSNYPVILKE-VNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (560)
Q Consensus 148 ~~V~VIG-~G~mG~~iA~~l~~~G~~V~l~d-~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (560)
++|+||| .|.||.+||..|.++|++|++|+ ++.. ++ +.++
T Consensus 159 k~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~-l~-------------------------------------e~~~ 200 (296)
T PRK14188 159 LNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRD-LP-------------------------------------AVCR 200 (296)
T ss_pred CEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCC-HH-------------------------------------HHHh
Confidence 6899999 89999999999999999999995 5542 11 2356
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeec
Q 008604 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260 (560)
Q Consensus 226 ~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~s 260 (560)
+||+||.|++..-.++.. +++++++++.
T Consensus 201 ~ADIVIsavg~~~~v~~~-------~lk~GavVID 228 (296)
T PRK14188 201 RADILVAAVGRPEMVKGD-------WIKPGATVID 228 (296)
T ss_pred cCCEEEEecCChhhcchh-------eecCCCEEEE
Confidence 799999999865433332 2778888764
No 285
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=97.12 E-value=0.003 Score=67.16 Aligned_cols=75 Identities=25% Similarity=0.306 Sum_probs=48.5
Q ss_pred eEEEEEcCccchH-HHHHHHHhC-----CCcEEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC
Q 008604 148 KKVAILGGGLMGS-GIATALILS-----NYPVILKEVN-EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD 220 (560)
Q Consensus 148 ~~V~VIG~G~mG~-~iA~~l~~~-----G~~V~l~d~~-~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 220 (560)
.||+|||+|..-. .+...+++. +-+|+++|++ +++++.... .....++....+ -++..|+|
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~----~~~~~~~~~~~~--------~~v~~t~d 68 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGA----LAKRMVKKAGLP--------IKVHLTTD 68 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHH----HHHHHHHhhCCC--------eEEEEeCC
Confidence 4899999988633 455555542 4689999999 787765322 222222221111 14566777
Q ss_pred c-ccccCCCEEEEec
Q 008604 221 Y-ESFKDVDMVIEAI 234 (560)
Q Consensus 221 ~-~~~~~aDlVIeav 234 (560)
+ +++.+||+||.++
T Consensus 69 ~~~al~gadfVi~~~ 83 (419)
T cd05296 69 RREALEGADFVFTQI 83 (419)
T ss_pred HHHHhCCCCEEEEEE
Confidence 7 6799999999987
No 286
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=97.12 E-value=0.00085 Score=68.85 Aligned_cols=42 Identities=14% Similarity=0.151 Sum_probs=35.3
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcch------------HHHHHHHHHhhhcc
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQL------------VSTARQWALDILEH 42 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l------------~~~A~~~a~~la~~ 42 (560)
|+++|++++|++|+++||||+|||+.++ ++.+.++++.+...
T Consensus 188 llltGe~~sA~EA~~~GLVd~VVp~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 241 (360)
T TIGR03200 188 SGTLCEPWSAHKAKRLGIIMDVVPALKVDGKFVANPLVVTDRYLDEFGRIVHGE 241 (360)
T ss_pred HHHhCCcCcHHHHHHcCChheecCchhcCcchhcCcccchHHHHHHHhHHhcCC
Confidence 5789999999999999999999998887 66666677666654
No 287
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=97.09 E-value=0.0017 Score=68.27 Aligned_cols=95 Identities=25% Similarity=0.210 Sum_probs=64.0
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (560)
++|+|+|.|.+|.++|+.+...|.+|+++|+++.+...+. ..|. ...+..+.+.++
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~-----------~~G~-------------~v~~leeal~~a 251 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAA-----------MDGF-------------RVMTMEEAAKIG 251 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHH-----------hcCC-------------EeCCHHHHHhcC
Confidence 6899999999999999999999999999999987643322 1221 001111346789
Q ss_pred CEEEEeccCChHHHHHHHH-HHHhhcCCCceeeccCCc----ccHHHHHh
Q 008604 228 DMVIEAIIENVSLKQQIFA-DLEKYCPPHCILASNTST----IDLNLIGE 272 (560)
Q Consensus 228 DlVIeav~e~~~~k~~~~~-~l~~~~~~~~ii~sntSs----l~i~~la~ 272 (560)
|+||++... ..++. +....++++++++ |++. +....+.+
T Consensus 252 DVVItaTG~-----~~vI~~~~~~~mK~Gaili-N~G~~~~eId~~aL~~ 295 (406)
T TIGR00936 252 DIFITATGN-----KDVIRGEHFENMKDGAIVA-NIGHFDVEIDVKALEE 295 (406)
T ss_pred CEEEECCCC-----HHHHHHHHHhcCCCCcEEE-EECCCCceeCHHHHHH
Confidence 999998752 22333 3556788899886 4443 33445544
No 288
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.08 E-value=0.0015 Score=65.98 Aligned_cols=41 Identities=24% Similarity=0.300 Sum_probs=36.5
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHHH
Q 008604 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIG 188 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~~ 188 (560)
++|.|||+|.+|++++..|+..|. +|+++||+.++++...+
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~ 169 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALAD 169 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 689999999999999999999998 79999999988765443
No 289
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=97.05 E-value=0.00038 Score=76.07 Aligned_cols=42 Identities=26% Similarity=0.400 Sum_probs=40.0
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhcc
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~ 42 (560)
|+|||++|+|+||++|||||+|||++++++++.++|+++++.
T Consensus 188 llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~ 229 (546)
T TIGR03222 188 FCTIEEGVRGKRAKEWRLVDEVVKPSQFDAAIAERAAELAAQ 229 (546)
T ss_pred HHHcCCCccHHHHHHcCCceEEeChHHHHHHHHHHHHHHHhC
Confidence 468999999999999999999999999999999999999986
No 290
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.03 E-value=0.0017 Score=68.72 Aligned_cols=86 Identities=23% Similarity=0.205 Sum_probs=60.6
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (560)
++|+|+|.|.+|.++|..+...|.+|+++|+++.+...+. ..|. .. .++ +.+.+
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~-----------~~G~-------------~v-~~l~eal~~ 267 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAA-----------MDGF-------------RV-MTMEEAAEL 267 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHH-----------hcCC-------------Ee-cCHHHHHhC
Confidence 5899999999999999999999999999999987654321 1121 00 111 34568
Q ss_pred CCEEEEeccCChHHHHHHHH-HHHhhcCCCceeeccCCc
Q 008604 227 VDMVIEAIIENVSLKQQIFA-DLEKYCPPHCILASNTST 264 (560)
Q Consensus 227 aDlVIeav~e~~~~k~~~~~-~l~~~~~~~~ii~sntSs 264 (560)
+|+||++... ..++. +....++++++++ |.+.
T Consensus 268 aDVVI~aTG~-----~~vI~~~~~~~mK~Gaili-NvG~ 300 (425)
T PRK05476 268 GDIFVTATGN-----KDVITAEHMEAMKDGAILA-NIGH 300 (425)
T ss_pred CCEEEECCCC-----HHHHHHHHHhcCCCCCEEE-EcCC
Confidence 9999998742 22343 4666788999885 4443
No 291
>PLN02494 adenosylhomocysteinase
Probab=97.03 E-value=0.0049 Score=65.59 Aligned_cols=87 Identities=22% Similarity=0.285 Sum_probs=60.7
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (560)
++|+|+|.|.+|.++|+.+...|.+|+++|+++.+...+. ..|.- . .++ +.+..
T Consensus 255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~-----------~~G~~-------------v-v~leEal~~ 309 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQAL-----------MEGYQ-------------V-LTLEDVVSE 309 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHH-----------hcCCe-------------e-ccHHHHHhh
Confidence 6899999999999999999999999999999987643332 11210 0 011 34678
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCc
Q 008604 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (560)
Q Consensus 227 aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSs 264 (560)
+|+||++... +..+..+..+.++++++|+ |++.
T Consensus 310 ADVVI~tTGt----~~vI~~e~L~~MK~GAiLi-NvGr 342 (477)
T PLN02494 310 ADIFVTTTGN----KDIIMVDHMRKMKNNAIVC-NIGH 342 (477)
T ss_pred CCEEEECCCC----ccchHHHHHhcCCCCCEEE-EcCC
Confidence 9999986542 2233455566789999886 4443
No 292
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=96.99 E-value=0.0021 Score=68.53 Aligned_cols=89 Identities=22% Similarity=0.282 Sum_probs=62.9
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD 226 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 226 (560)
++|+|||.|.+|.++|..+...|.+|+++|+++.....+. ..|. . ..++ +.++.
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~-----------~~G~-------------~-~~~leell~~ 309 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAA-----------MEGY-------------Q-VVTLEDVVET 309 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHH-----------hcCc-------------e-eccHHHHHhc
Confidence 6899999999999999999999999999999987643321 1121 0 1122 34678
Q ss_pred CCEEEEeccCChHHHHHHH-HHHHhhcCCCceeeccCCcccH
Q 008604 227 VDMVIEAIIENVSLKQQIF-ADLEKYCPPHCILASNTSTIDL 267 (560)
Q Consensus 227 aDlVIeav~e~~~~k~~~~-~~l~~~~~~~~ii~sntSsl~i 267 (560)
+|+||.+.. + +.++ .+..+.++++++|+ |++....
T Consensus 310 ADIVI~atG-t----~~iI~~e~~~~MKpGAiLI-NvGr~d~ 345 (476)
T PTZ00075 310 ADIFVTATG-N----KDIITLEHMRRMKNNAIVG-NIGHFDN 345 (476)
T ss_pred CCEEEECCC-c----ccccCHHHHhccCCCcEEE-EcCCCch
Confidence 999999863 2 2344 35556788999885 6766553
No 293
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.98 E-value=0.0016 Score=66.97 Aligned_cols=100 Identities=20% Similarity=0.252 Sum_probs=63.0
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCC-------CcEEEEeCCHH--HHHHHHHHHHHHHHHHHHcCCCCHHHHH-hhhcccc
Q 008604 148 KKVAILGG-GLMGSGIATALILSN-------YPVILKEVNEK--FLEAGIGRVRANLQSRVKKGKMTQEKFE-KTISLLT 216 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G-------~~V~l~d~~~~--~~~~~~~~i~~~~~~~~~~g~~~~~~~~-~~~~~i~ 216 (560)
-||+|+|+ |.+|+.++..|+..| .+|+++|+++. .++. . .++-.+.. .....++
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g-~--------------~~Dl~d~~~~~~~~~~ 67 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEG-V--------------VMELQDCAFPLLKSVV 67 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccc-e--------------eeehhhccccccCCce
Confidence 47999999 999999999998855 58999999653 1211 0 00000000 1112333
Q ss_pred cccC-cccccCCCEEEEecc------C--------ChHHHHHHHHHHHhhcCCCceeeccC
Q 008604 217 GVLD-YESFKDVDMVIEAII------E--------NVSLKQQIFADLEKYCPPHCILASNT 262 (560)
Q Consensus 217 ~~~~-~~~~~~aDlVIeav~------e--------~~~~k~~~~~~l~~~~~~~~ii~snt 262 (560)
...+ ++++++||+||-+.- + |..+-+++...+.++++++++++.-|
T Consensus 68 ~~~~~~~~l~~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvs 128 (325)
T cd01336 68 ATTDPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVG 128 (325)
T ss_pred ecCCHHHHhCCCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 3455 488999999998761 1 22234666677888877777665433
No 294
>PRK04148 hypothetical protein; Provisional
Probab=96.96 E-value=0.0018 Score=57.17 Aligned_cols=92 Identities=24% Similarity=0.254 Sum_probs=62.0
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (560)
++|.+||+| -|..+|..|++.|++|+.+|+|+++.+.+.+. +. ....+.+ +..+.+--.++
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~-----------~~------~~v~dDl-f~p~~~~y~~a 78 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKL-----------GL------NAFVDDL-FNPNLEIYKNA 78 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh-----------CC------eEEECcC-CCCCHHHHhcC
Confidence 589999999 89999999999999999999999987765422 10 0000111 12234446789
Q ss_pred CEEEEeccCChHHHHHHHHHHHhhcCCCceeec
Q 008604 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260 (560)
Q Consensus 228 DlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~s 260 (560)
|+|-+.-|. .++. .-+-++.+-...+.+|..
T Consensus 79 ~liysirpp-~el~-~~~~~la~~~~~~~~i~~ 109 (134)
T PRK04148 79 KLIYSIRPP-RDLQ-PFILELAKKINVPLIIKP 109 (134)
T ss_pred CEEEEeCCC-HHHH-HHHHHHHHHcCCCEEEEc
Confidence 999988763 4443 334456666677777653
No 295
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=96.95 E-value=0.002 Score=64.59 Aligned_cols=40 Identities=23% Similarity=0.293 Sum_probs=36.0
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~ 187 (560)
++|.|+|+|.+|.+++..++..|++|+++|+++++++...
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la 157 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELA 157 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 5899999999999999999999999999999988776543
No 296
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.94 E-value=0.0076 Score=58.69 Aligned_cols=93 Identities=25% Similarity=0.327 Sum_probs=60.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC---c--c
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD---Y--E 222 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~---~--~ 222 (560)
+++.|||+|.+|.++|..|.+.|++|+++|.+++..++..+. .+...+-.| . .++ + .
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~---~~~~~~v~g--------------d-~t~~~~L~~a 62 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLAD---ELDTHVVIG--------------D-ATDEDVLEEA 62 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhh---hcceEEEEe--------------c-CCCHHHHHhc
Confidence 479999999999999999999999999999999987763320 000000000 0 111 1 1
Q ss_pred cccCCCEEEEeccCChHHHHHHHHHHH-hhcCCCceeec
Q 008604 223 SFKDVDMVIEAIIENVSLKQQIFADLE-KYCPPHCILAS 260 (560)
Q Consensus 223 ~~~~aDlVIeav~e~~~~k~~~~~~l~-~~~~~~~ii~s 260 (560)
.+.++|.+|-+..+|.. ..++..+. +.+....+++-
T Consensus 63 gi~~aD~vva~t~~d~~--N~i~~~la~~~~gv~~viar 99 (225)
T COG0569 63 GIDDADAVVAATGNDEV--NSVLALLALKEFGVPRVIAR 99 (225)
T ss_pred CCCcCCEEEEeeCCCHH--HHHHHHHHHHhcCCCcEEEE
Confidence 37889999999876543 34444443 32444555553
No 297
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=96.92 E-value=0.00052 Score=75.16 Aligned_cols=43 Identities=23% Similarity=0.350 Sum_probs=40.3
Q ss_pred CcccCCCCChHHHHhCCCcceecCCcchHHHHHHHHHhhhccC
Q 008604 1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHR 43 (560)
Q Consensus 1 mlltG~~i~A~eA~~~GLVd~vv~~~~l~~~A~~~a~~la~~~ 43 (560)
|+|||++++|+||++|||||+|||++++++++.++|+++++.+
T Consensus 192 llltG~~i~AeeA~~~GLVd~vv~~d~l~~~a~~~A~~ia~~~ 234 (550)
T PRK08184 192 FCTIEEGVRGKRAVDWRLVDEVVKPSKFDAKVAERAAELAAAS 234 (550)
T ss_pred HHHhCCcccHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhCC
Confidence 4689999999999999999999999999999999999999963
No 298
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.89 E-value=0.0019 Score=66.20 Aligned_cols=72 Identities=22% Similarity=0.224 Sum_probs=49.9
Q ss_pred ceEEEEEcCccchHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccc
Q 008604 147 VKKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF 224 (560)
Q Consensus 147 ~~~V~VIG~G~mG~~iA~~l~~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 224 (560)
-++|+|||+|.||..++..+...| .+|+++|+++++.....+.+ |. . .+. ..++ +.+
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~----------g~-~---------~~~-~~~~~~~l 236 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKEL----------GG-N---------AVP-LDELLELL 236 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc----------CC-e---------EEe-HHHHHHHH
Confidence 468999999999999999998865 68999999988765432211 11 0 000 0112 346
Q ss_pred cCCCEEEEeccCChH
Q 008604 225 KDVDMVIEAIIENVS 239 (560)
Q Consensus 225 ~~aDlVIeav~e~~~ 239 (560)
.++|+||.|++....
T Consensus 237 ~~aDvVi~at~~~~~ 251 (311)
T cd05213 237 NEADVVISATGAPHY 251 (311)
T ss_pred hcCCEEEECCCCCch
Confidence 789999999985443
No 299
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=96.89 E-value=0.0073 Score=58.46 Aligned_cols=150 Identities=13% Similarity=0.144 Sum_probs=105.9
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 008604 148 KKVAILGGGLMGSGIATALILSNY----PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (560)
.+|++||+|.|...++..+..+|. +++.+-.+...... .....| .-.+.++.+.
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~----------~~~~~g------------~~~~~~n~~~ 58 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGL----------MFEALG------------VKTVFTNLEV 58 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhh----------hhhcCC------------ceeeechHHH
Confidence 369999999999999999999985 33433332211111 011112 1122344567
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccHHHHHhhccCCCcEeecccCCCCCCCCeEE-EEeCCC
Q 008604 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLE-IVRTNQ 302 (560)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~~la~~~~~~~r~~g~hf~~P~~~~~lvE-iv~g~~ 302 (560)
+..+|+++.++- ..+-..++.++......+.||.|..-+.+++.+...+.-+.|++-..+..|....-... +..+..
T Consensus 59 ~~~s~v~~~svK--p~~i~~vls~~~~~~~~~~iivS~aaG~tl~~l~~~l~~~~rviRvmpNtp~~v~eg~sv~~~g~~ 136 (267)
T KOG3124|consen 59 LQASDVVFLSVK--PQVIESVLSEIKPKVSKGKIIVSVAAGKTLSSLESKLSPPTRVIRVMPNTPSVVGEGASVYAIGCH 136 (267)
T ss_pred HhhccceeEeec--chhHHHHhhcCccccccceEEEEEeecccHHHHHHhcCCCCceEEecCCChhhhhcCcEEEeeCCC
Confidence 789999999985 44555666666655666778888888999998888887778999998888887665555 446777
Q ss_pred CcHHHHHHHHHHHHhcCCc
Q 008604 303 TSPQVIVDLLDIGKKIKKT 321 (560)
Q Consensus 303 t~~e~~~~~~~l~~~lGk~ 321 (560)
...+..+.+..++...|+-
T Consensus 137 ~~~~D~~l~~~ll~~vG~~ 155 (267)
T KOG3124|consen 137 ATNEDLELVEELLSAVGLC 155 (267)
T ss_pred cchhhHHHHHHHHHhcCcc
Confidence 8888889999999998853
No 300
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=96.88 E-value=0.0034 Score=64.74 Aligned_cols=90 Identities=12% Similarity=0.051 Sum_probs=58.4
Q ss_pred ceEEEEEcCccchHHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 008604 147 VKKVAILGGGLMGSGIATALIL--SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (560)
Q Consensus 147 ~~~V~VIG~G~mG~~iA~~l~~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (560)
.++|+|||+|.||...+..+.. ...+|.+||+++++++...+++. +.|. .+....+. +.
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~-------~~g~-----------~v~~~~~~~ea 189 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRAS-------DYEV-----------PVRAATDPREA 189 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHH-------hhCC-----------cEEEeCCHHHH
Confidence 5689999999999996665543 46789999999999876544332 1110 12223343 56
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeec
Q 008604 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260 (560)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~s 260 (560)
+.+||+||.|++... .++. .+.+++++.|.+
T Consensus 190 v~~aDiVitaT~s~~----P~~~--~~~l~~g~~v~~ 220 (325)
T TIGR02371 190 VEGCDILVTTTPSRK----PVVK--ADWVSEGTHINA 220 (325)
T ss_pred hccCCEEEEecCCCC----cEec--HHHcCCCCEEEe
Confidence 889999999997532 2221 234567776643
No 301
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.87 E-value=0.0014 Score=65.48 Aligned_cols=68 Identities=18% Similarity=0.343 Sum_probs=52.3
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (560)
++|+|||. |.||.++|..|.++|++|+++..... ++ +.++
T Consensus 159 k~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t~--------------------------------------~l~~~~~ 200 (284)
T PRK14179 159 KHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRTR--------------------------------------NLAEVAR 200 (284)
T ss_pred CEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCCC--------------------------------------CHHHHHh
Confidence 68999999 99999999999999999999842211 11 3467
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeec
Q 008604 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260 (560)
Q Consensus 226 ~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~s 260 (560)
+||+||.|+...-.++.. +++++++++.
T Consensus 201 ~ADIVI~avg~~~~v~~~-------~ik~GavVID 228 (284)
T PRK14179 201 KADILVVAIGRGHFVTKE-------FVKEGAVVID 228 (284)
T ss_pred hCCEEEEecCccccCCHH-------HccCCcEEEE
Confidence 899999999755444433 3788888864
No 302
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=96.78 E-value=0.018 Score=57.08 Aligned_cols=203 Identities=18% Similarity=0.234 Sum_probs=113.8
Q ss_pred ceEEEEEcCccchHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHH---H-HHHHHHHHHcCCCCHHHHHhhhcccccccC
Q 008604 147 VKKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGR---V-RANLQSRVKKGKMTQEKFEKTISLLTGVLD 220 (560)
Q Consensus 147 ~~~V~VIG~G~mG~~iA~~l~~~--G~~V~l~d~~~~~~~~~~~~---i-~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 220 (560)
|.||+-||+|.+|.+-...++.. .++|+++|+|..++....+. | +-.++..++. ..=.++-+++|
T Consensus 1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~---------crgknlffstd 71 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQ---------CRGKNLFFSTD 71 (481)
T ss_pred CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHH---------hcCCceeeecc
Confidence 46899999999999888777655 67999999999887643221 0 1112222211 11124567778
Q ss_pred cc-cccCCCEEEEecc-------------CChHHHHHHHHHHHhhcCCCceeeccCCcccHH---HHHhhccCCCcEeec
Q 008604 221 YE-SFKDVDMVIEAII-------------ENVSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGA 283 (560)
Q Consensus 221 ~~-~~~~aDlVIeav~-------------e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~---~la~~~~~~~r~~g~ 283 (560)
.+ ++.++|+|+.+|- .|+......-+.+.+....+.|+ .--|+.|+. .+...+.+. --|+
T Consensus 72 iekai~eadlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kiv-vekstvpv~aaesi~~il~~n--~~~i 148 (481)
T KOG2666|consen 72 IEKAIKEADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIV-VEKSTVPVKAAESIEKILNHN--SKGI 148 (481)
T ss_pred hHHHhhhcceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEE-EeeccccchHHHHHHHHHhcC--CCCc
Confidence 74 6899999999982 24555556666677777777766 467888864 233333221 2355
Q ss_pred ccC---CCCC----------CCCeEEEEeCCCCcH--HHHHHHHHHHHhc-CCceEEecC-----ccccchhchHHHH--
Q 008604 284 HFF---SPAH----------VMPLLEIVRTNQTSP--QVIVDLLDIGKKI-KKTPIVVGN-----CTGFAVNRMFFPY-- 340 (560)
Q Consensus 284 hf~---~P~~----------~~~lvEiv~g~~t~~--e~~~~~~~l~~~l-Gk~~i~v~d-----~~G~i~nri~~~~-- 340 (560)
||- ||-. ..|---++.|..|.+ ..++.+..+...+ -+.-|.... -.-..+|..+..-
T Consensus 149 ~fqilsnpeflaegtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaanaflaqris 228 (481)
T KOG2666|consen 149 KFQILSNPEFLAEGTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFLAQRIS 228 (481)
T ss_pred eeEeccChHHhcccchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHHHHHHh
Confidence 551 3321 112223666665532 3445555555554 233344321 1112333333221
Q ss_pred -HHHHHHHHH-cCCCHHHHHHHH
Q 008604 341 -TQAAFLLVE-RGTDLYLIDRAI 361 (560)
Q Consensus 341 -~~ea~~l~~-~G~~~~dID~a~ 361 (560)
+|....+.+ -|.+..++..++
T Consensus 229 sins~salceatgadv~eva~av 251 (481)
T KOG2666|consen 229 SINSMSALCEATGADVSEVAYAV 251 (481)
T ss_pred hhHHHHHHHHhcCCCHHHHHHHh
Confidence 233333333 577888888776
No 303
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=96.77 E-value=0.0038 Score=63.57 Aligned_cols=102 Identities=22% Similarity=0.083 Sum_probs=71.8
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 008604 147 VKKVAILGGGLMGSGIATALILSNYPVILK-EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (560)
Q Consensus 147 ~~~V~VIG~G~mG~~iA~~l~~~G~~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (560)
=++|+|+|+|.+|..||+.|...| .++.| .+++..-+... +.+. . ..+..+-+.
T Consensus 162 gK~vgilG~G~IG~~ia~rL~~Fg-~~i~y~~r~~~~~~~~~-----------~~~~-----------~--~~d~~~~~~ 216 (336)
T KOG0069|consen 162 GKTVGILGLGRIGKAIAKRLKPFG-CVILYHSRTQLPPEEAY-----------EYYA-----------E--FVDIEELLA 216 (336)
T ss_pred CCEEEEecCcHHHHHHHHhhhhcc-ceeeeecccCCchhhHH-----------Hhcc-----------c--ccCHHHHHh
Confidence 479999999999999999999999 55554 45443332221 1110 0 122235578
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCccc---HHHHHhhc
Q 008604 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID---LNLIGERT 274 (560)
Q Consensus 226 ~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~---i~~la~~~ 274 (560)
++|+||.|.|-+.+...-+-+++.+.++++++|+ |++--. -.++.+++
T Consensus 217 ~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlV-N~aRG~iide~~l~eaL 267 (336)
T KOG0069|consen 217 NSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLV-NTARGAIIDEEALVEAL 267 (336)
T ss_pred hCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEE-eccccccccHHHHHHHH
Confidence 9999999999999988888889999999999885 665322 33555555
No 304
>PRK05086 malate dehydrogenase; Provisional
Probab=96.76 E-value=0.0028 Score=64.87 Aligned_cols=94 Identities=20% Similarity=0.308 Sum_probs=57.8
Q ss_pred eEEEEEcC-ccchHHHHHHHHh---CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc--ccC-
Q 008604 148 KKVAILGG-GLMGSGIATALIL---SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG--VLD- 220 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~---~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~--~~~- 220 (560)
+||+|||+ |.+|..++..+.. .+++++++|+++.....+++ +... .....+.. .++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alD---------l~~~--------~~~~~i~~~~~~d~ 63 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVD---------LSHI--------PTAVKIKGFSGEDP 63 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehh---------hhcC--------CCCceEEEeCCCCH
Confidence 58999999 9999999998855 35799999998542100010 0100 00012222 235
Q ss_pred cccccCCCEEEEeccC--------------ChHHHHHHHHHHHhhcCCCceee
Q 008604 221 YESFKDVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILA 259 (560)
Q Consensus 221 ~~~~~~aDlVIeav~e--------------~~~~k~~~~~~l~~~~~~~~ii~ 259 (560)
++++++||+||.|.-- |..+-+.+...+.++. ++++++
T Consensus 64 ~~~l~~~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~-~~~ivi 115 (312)
T PRK05086 64 TPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTC-PKACIG 115 (312)
T ss_pred HHHcCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEE
Confidence 5789999999998731 2225556666777775 445443
No 305
>PRK09186 flagellin modification protein A; Provisional
Probab=96.70 E-value=0.024 Score=55.78 Aligned_cols=82 Identities=23% Similarity=0.368 Sum_probs=53.4
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHH----HHHcCCCCHHHHHhhhcccccccCcc
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQS----RVKKGKMTQEKFEKTISLLTGVLDYE 222 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~----~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (560)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+.+...... .+..+..+++++.+.++.+. +
T Consensus 5 k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~-----~ 79 (256)
T PRK09186 5 KTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSA-----E 79 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHH-----H
Confidence 56788876 89999999999999999999999988877665554322100 11223334444444433322 2
Q ss_pred cccCCCEEEEec
Q 008604 223 SFKDVDMVIEAI 234 (560)
Q Consensus 223 ~~~~aDlVIeav 234 (560)
.....|+||.+.
T Consensus 80 ~~~~id~vi~~A 91 (256)
T PRK09186 80 KYGKIDGAVNCA 91 (256)
T ss_pred HcCCccEEEECC
Confidence 234578888876
No 306
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.70 E-value=0.0031 Score=59.92 Aligned_cols=40 Identities=25% Similarity=0.315 Sum_probs=35.5
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~ 187 (560)
++|.|+|+ |.+|..++..++..|++|++++++.++++...
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~ 69 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAA 69 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 58999996 99999999999999999999999988776543
No 307
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=96.69 E-value=0.0026 Score=58.43 Aligned_cols=70 Identities=26% Similarity=0.184 Sum_probs=50.0
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (560)
+||+|||+ |..|+.|+.-..+.||+|+.+-||++++.... .+ ..++++... .+...+++.+
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~-~~-----~i~q~Difd------------~~~~a~~l~g 62 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQ-GV-----TILQKDIFD------------LTSLASDLAG 62 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccc-cc-----eeecccccC------------hhhhHhhhcC
Confidence 58999998 99999999999999999999999999875310 00 011222211 1111256889
Q ss_pred CCEEEEecc
Q 008604 227 VDMVIEAII 235 (560)
Q Consensus 227 aDlVIeav~ 235 (560)
-|.||.+.-
T Consensus 63 ~DaVIsA~~ 71 (211)
T COG2910 63 HDAVISAFG 71 (211)
T ss_pred CceEEEecc
Confidence 999999873
No 308
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=96.65 E-value=0.024 Score=57.14 Aligned_cols=158 Identities=16% Similarity=0.161 Sum_probs=85.3
Q ss_pred ceEEEEEcCccchHHHHHHHHh-CCCcEEE-EeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-
Q 008604 147 VKKVAILGGGLMGSGIATALIL-SNYPVIL-KEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES- 223 (560)
Q Consensus 147 ~~~V~VIG~G~mG~~iA~~l~~-~G~~V~l-~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 223 (560)
.-||++||+|.||++|+....+ .|++|+. -|++.....++..+...--...++....+.-..+-.-+.+..|.|.+.
T Consensus 17 PiRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D~~~i 96 (438)
T COG4091 17 PIRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDDAELI 96 (438)
T ss_pred ceEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecchhhh
Confidence 4589999999999999987765 6998764 678887776665432111111112111111111111234555666554
Q ss_pred --ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCC-----cccHHHHHhhccCCCcEeecccCCCCCCCCeEE
Q 008604 224 --FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS-----TIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLE 296 (560)
Q Consensus 224 --~~~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntS-----sl~i~~la~~~~~~~r~~g~hf~~P~~~~~lvE 296 (560)
....|+||++.--..---+-. ++.......++-.|.- +..+.+.+.. .|+-|
T Consensus 97 ~~~~~IdvIIdATG~p~vGA~~~---l~Ai~h~KHlVMmNVEaDvtIGp~Lk~~Ad~-------~Gviy----------- 155 (438)
T COG4091 97 IANDLIDVIIDATGVPEVGAKIA---LEAILHGKHLVMMNVEADVTIGPILKQQADA-------AGVIY----------- 155 (438)
T ss_pred hcCCcceEEEEcCCCcchhhHhH---HHHHhcCCeEEEEEeeeceeecHHHHHHHhh-------cCeEE-----------
Confidence 345788998862111111122 2333334445555543 1122233322 23221
Q ss_pred EEeCCCCcHHHHHHHHHHHHhcCCceEEec
Q 008604 297 IVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (560)
Q Consensus 297 iv~g~~t~~e~~~~~~~l~~~lGk~~i~v~ 326 (560)
..+..-.|..+-.+..|.+.+|.+++..+
T Consensus 156 -S~~~GDeP~~~mEL~efa~a~G~evv~aG 184 (438)
T COG4091 156 -SGGAGDEPSSCMELYEFASALGFEVVSAG 184 (438)
T ss_pred -eccCCCCcHHHHHHHHHHHhcCCeEEecc
Confidence 12222356677788899999999999886
No 309
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=96.64 E-value=0.0048 Score=62.18 Aligned_cols=71 Identities=21% Similarity=0.210 Sum_probs=50.8
Q ss_pred eEEEEEcCccchHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC-ccccc
Q 008604 148 KKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD-YESFK 225 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~~~ 225 (560)
++|.|+|+|.+|.+++..|+..| .+|++++|+.++++...+.+.. .+ .+....+ .+.+.
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~-------~~------------~~~~~~~~~~~~~ 184 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGA-------LG------------KAELDLELQEELA 184 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhh-------cc------------ceeecccchhccc
Confidence 58999999999999999999999 7899999999877654432210 00 0111111 14567
Q ss_pred CCCEEEEeccCC
Q 008604 226 DVDMVIEAIIEN 237 (560)
Q Consensus 226 ~aDlVIeav~e~ 237 (560)
++|+||.|+|-.
T Consensus 185 ~~DivInaTp~g 196 (278)
T PRK00258 185 DFDLIINATSAG 196 (278)
T ss_pred cCCEEEECCcCC
Confidence 899999999843
No 310
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=96.64 E-value=0.0054 Score=59.57 Aligned_cols=99 Identities=26% Similarity=0.428 Sum_probs=66.8
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc
Q 008604 147 VKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (560)
Q Consensus 147 ~~~V~VIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 224 (560)
..||.|||.|..|.++|..++.+|. +++++|.++++++...-. ++.|.. =-...++....||..-
T Consensus 20 ~~KItVVG~G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MD--------LqH~s~-----f~~~~~V~~~~Dy~~s 86 (332)
T KOG1495|consen 20 HNKITVVGVGQVGMACAISILLKGLADELVLVDVNEDKLKGEMMD--------LQHGSA-----FLSTPNVVASKDYSVS 86 (332)
T ss_pred CceEEEEccchHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhh--------hccccc-----cccCCceEecCccccc
Confidence 6799999999999999999999986 899999999877643211 111110 0112355666788999
Q ss_pred cCCCEEEEeccC--------------ChHHHHHHHHHHHhhcCCCceee
Q 008604 225 KDVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILA 259 (560)
Q Consensus 225 ~~aDlVIeav~e--------------~~~~k~~~~~~l~~~~~~~~ii~ 259 (560)
+++++||..+-- +.++-+.++.++-++ +|++++.
T Consensus 87 a~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~y-Spd~~ll 134 (332)
T KOG1495|consen 87 ANSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKY-SPDCILL 134 (332)
T ss_pred CCCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhc-CCCeEEE
Confidence 999999987721 233344444455554 5677554
No 311
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=96.63 E-value=0.0033 Score=65.93 Aligned_cols=40 Identities=25% Similarity=0.305 Sum_probs=35.9
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 008604 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (560)
Q Consensus 147 ~~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~ 186 (560)
..+|.|||+|.+|...+..+...|.+|+++|+++++++..
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l 206 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQL 206 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHH
Confidence 3679999999999999999999999999999998876543
No 312
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.62 E-value=0.013 Score=56.28 Aligned_cols=130 Identities=16% Similarity=0.227 Sum_probs=75.9
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK-FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (560)
++|.|||+|.+|..-+..|+..|.+|++++.+.. .+. .+.+.|.+. .+...-..+.+.+
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~-----------~l~~~~~i~---------~~~~~~~~~dl~~ 69 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELT-----------LLAEQGGIT---------WLARCFDADILEG 69 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHH-----------HHHHcCCEE---------EEeCCCCHHHhCC
Confidence 5899999999999999999999999999987643 111 112223221 1111111245789
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccHHHHHhhccCCCcEeecccCCC--CCCCCeEEEEeCCCCc
Q 008604 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSP--AHVMPLLEIVRTNQTS 304 (560)
Q Consensus 227 aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~~la~~~~~~~r~~g~hf~~P--~~~~~lvEiv~g~~t~ 304 (560)
+|+||-|. ++.++...++....+ ..+++ |..+ .|+. ..|+.| +...+++--+.....+
T Consensus 70 ~~lVi~at-~d~~ln~~i~~~a~~----~~ilv-n~~d-----------~~e~---~~f~~pa~~~~g~l~iaisT~G~s 129 (205)
T TIGR01470 70 AFLVIAAT-DDEELNRRVAHAARA----RGVPV-NVVD-----------DPEL---CSFIFPSIVDRSPVVVAISSGGAA 129 (205)
T ss_pred cEEEEECC-CCHHHHHHHHHHHHH----cCCEE-EECC-----------Cccc---CeEEEeeEEEcCCEEEEEECCCCC
Confidence 99999774 555666666554432 23332 3221 1111 234455 3445666666666667
Q ss_pred HHHHHHHHHHHHh
Q 008604 305 PQVIVDLLDIGKK 317 (560)
Q Consensus 305 ~e~~~~~~~l~~~ 317 (560)
|.....++.-+..
T Consensus 130 P~la~~lr~~ie~ 142 (205)
T TIGR01470 130 PVLARLLRERIET 142 (205)
T ss_pred cHHHHHHHHHHHH
Confidence 7666655554433
No 313
>PRK07340 ornithine cyclodeaminase; Validated
Probab=96.60 E-value=0.0062 Score=62.16 Aligned_cols=88 Identities=16% Similarity=0.168 Sum_probs=58.4
Q ss_pred ceEEEEEcCccchHHHHHHHHh-CC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 008604 147 VKKVAILGGGLMGSGIATALIL-SN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (560)
Q Consensus 147 ~~~V~VIG~G~mG~~iA~~l~~-~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (560)
.++|+|||+|.||...+..+.. .+ .+|.+||++++++++..+++.. .+. .+. ..+. +.
T Consensus 125 ~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~-------~~~-----------~~~-~~~~~~a 185 (304)
T PRK07340 125 PGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARA-------LGP-----------TAE-PLDGEAI 185 (304)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHh-------cCC-----------eeE-ECCHHHH
Confidence 4689999999999999999875 56 4799999999987765443311 110 011 2333 46
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeec
Q 008604 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260 (560)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~s 260 (560)
+.++|+||.|.+-.. .++.. .+++++.|..
T Consensus 186 v~~aDiVitaT~s~~----Pl~~~---~~~~g~hi~~ 215 (304)
T PRK07340 186 PEAVDLVVTATTSRT----PVYPE---AARAGRLVVA 215 (304)
T ss_pred hhcCCEEEEccCCCC----ceeCc---cCCCCCEEEe
Confidence 789999999987442 23322 2467776643
No 314
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=96.59 E-value=0.0045 Score=61.20 Aligned_cols=84 Identities=21% Similarity=0.233 Sum_probs=57.2
Q ss_pred cceEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHH---HHHHcCCCCHHHHHhhhcccccccCc
Q 008604 146 RVKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQ---SRVKKGKMTQEKFEKTISLLTGVLDY 221 (560)
Q Consensus 146 ~~~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~---~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (560)
..+++.|-|+ +.+|..+|..|+++|++|+++.|+.+++++..+++++... ..+..+...++++....+.+.
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~----- 79 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELK----- 79 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHH-----
Confidence 3567888898 9999999999999999999999999999988777655431 112223333333333322222
Q ss_pred ccccCCCEEEEec
Q 008604 222 ESFKDVDMVIEAI 234 (560)
Q Consensus 222 ~~~~~aDlVIeav 234 (560)
+.....|++|++.
T Consensus 80 ~~~~~IdvLVNNA 92 (265)
T COG0300 80 ERGGPIDVLVNNA 92 (265)
T ss_pred hcCCcccEEEECC
Confidence 2234688888886
No 315
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.57 E-value=0.0035 Score=57.97 Aligned_cols=34 Identities=29% Similarity=0.397 Sum_probs=30.9
Q ss_pred eEEEEEcCccc-hHHHHHHHHhCCCcEEEEeCCHH
Q 008604 148 KKVAILGGGLM-GSGIATALILSNYPVILKEVNEK 181 (560)
Q Consensus 148 ~~V~VIG~G~m-G~~iA~~l~~~G~~V~l~d~~~~ 181 (560)
++|.|||+|.| |..+|..|.+.|.+|++.+++.+
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~ 79 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTK 79 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCch
Confidence 68999999987 88899999999999999998853
No 316
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.57 E-value=0.0056 Score=61.81 Aligned_cols=40 Identities=15% Similarity=0.098 Sum_probs=35.7
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 008604 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI 187 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~ 187 (560)
++|.|||+|.+|++++..|+..|. +|++++|+.++.+...
T Consensus 126 k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La 166 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLV 166 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence 579999999999999999999997 6999999998876544
No 317
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=96.57 E-value=0.012 Score=55.89 Aligned_cols=91 Identities=19% Similarity=0.239 Sum_probs=57.7
Q ss_pred EEEEEcCccchHHHHHHHHhC--CC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-c
Q 008604 149 KVAILGGGLMGSGIATALILS--NY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F 224 (560)
Q Consensus 149 ~V~VIG~G~mG~~iA~~l~~~--G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 224 (560)
+|++||+|.+|..+...+... ++ -|.+||++.+++....+. +.. ...+++++ +
T Consensus 2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~----------------------~~~-~~~s~ide~~ 58 (255)
T COG1712 2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEAS----------------------VGR-RCVSDIDELI 58 (255)
T ss_pred eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhh----------------------cCC-CccccHHHHh
Confidence 799999999999999988654 34 478999999987654321 011 11245544 5
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCccc
Q 008604 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID 266 (560)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~ 266 (560)
.+.|+|+||.. .+.-++...++.+. .-++||. +++.+.
T Consensus 59 ~~~DlvVEaAS--~~Av~e~~~~~L~~-g~d~iV~-SVGALa 96 (255)
T COG1712 59 AEVDLVVEAAS--PEAVREYVPKILKA-GIDVIVM-SVGALA 96 (255)
T ss_pred hccceeeeeCC--HHHHHHHhHHHHhc-CCCEEEE-echhcc
Confidence 89999999997 33333333333221 3466665 455555
No 318
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.57 E-value=0.0024 Score=59.65 Aligned_cols=90 Identities=20% Similarity=0.283 Sum_probs=57.4
Q ss_pred EEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-cCc----cc
Q 008604 150 VAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LDY----ES 223 (560)
Q Consensus 150 V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~----~~ 223 (560)
|.|+|+ |.+|..++..|++.|++|+++-|++++++. ... +..+... .+. +.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--------------~~~---------~~~~~~d~~d~~~~~~a 57 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--------------SPG---------VEIIQGDLFDPDSVKAA 57 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--------------CTT---------EEEEESCTTCHHHHHHH
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--------------ccc---------cccceeeehhhhhhhhh
Confidence 689997 999999999999999999999999987653 000 1111111 111 34
Q ss_pred ccCCCEEEEeccC---ChHHHHHHHHHHHhhcCCCceeeccC
Q 008604 224 FKDVDMVIEAIIE---NVSLKQQIFADLEKYCPPHCILASNT 262 (560)
Q Consensus 224 ~~~aDlVIeav~e---~~~~k~~~~~~l~~~~~~~~ii~snt 262 (560)
+++||.||.+++. +.+.-+.+++.+.+.-.+..++.|..
T Consensus 58 l~~~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~s~~ 99 (183)
T PF13460_consen 58 LKGADAVIHAAGPPPKDVDAAKNIIEAAKKAGVKRVVYLSSA 99 (183)
T ss_dssp HTTSSEEEECCHSTTTHHHHHHHHHHHHHHTTSSEEEEEEET
T ss_pred hhhcchhhhhhhhhcccccccccccccccccccccceeeecc
Confidence 7799999999963 33344445555544332333443433
No 319
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.56 E-value=0.022 Score=54.54 Aligned_cols=129 Identities=23% Similarity=0.278 Sum_probs=75.3
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK-FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (560)
++|.|||+|.+|...+..|..+|++|++++.+.. .+.. ..+.+.+.- ..-.-..+.+.+
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~-----------l~~~~~i~~---------~~~~~~~~~l~~ 70 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVK-----------LVEEGKIRW---------KQKEFEPSDIVD 70 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHH-----------HHhCCCEEE---------EecCCChhhcCC
Confidence 6899999999999999999999999999987532 1211 122222110 000111246889
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccHHHHHhhccCCCcEeecccCCCC--CCCCeEEEEeCCCCc
Q 008604 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPA--HVMPLLEIVRTNQTS 304 (560)
Q Consensus 227 aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~~la~~~~~~~r~~g~hf~~P~--~~~~lvEiv~g~~t~ 304 (560)
+|+||-|.. +.++-+.+.... ..+. ++ |.. ..|+. ..|+.|. ...+++--+.....+
T Consensus 71 adlViaaT~-d~elN~~i~~~a----~~~~-lv-n~~-----------d~~~~---~~f~~Pa~~~~g~l~iaIsT~G~s 129 (202)
T PRK06718 71 AFLVIAATN-DPRVNEQVKEDL----PENA-LF-NVI-----------TDAES---GNVVFPSALHRGKLTISVSTDGAS 129 (202)
T ss_pred ceEEEEcCC-CHHHHHHHHHHH----HhCC-cE-EEC-----------CCCcc---CeEEEeeEEEcCCeEEEEECCCCC
Confidence 999887754 556655554433 2333 32 332 22222 2455553 345666666666667
Q ss_pred HHHHHHHHHHHHh
Q 008604 305 PQVIVDLLDIGKK 317 (560)
Q Consensus 305 ~e~~~~~~~l~~~ 317 (560)
|.....++.-+..
T Consensus 130 P~la~~lr~~ie~ 142 (202)
T PRK06718 130 PKLAKKIRDELEA 142 (202)
T ss_pred hHHHHHHHHHHHH
Confidence 7666665554443
No 320
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=96.56 E-value=0.0054 Score=66.57 Aligned_cols=70 Identities=21% Similarity=0.318 Sum_probs=50.8
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (560)
++|+|+|+|.||.+++..++..|++|+++|++.++++...+.+ .....+ ..+...+.++
T Consensus 333 k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~--------~~~~~~-------------~~~~~~l~~~ 391 (477)
T PRK09310 333 QHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRC--------QGKAFP-------------LESLPELHRI 391 (477)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--------ccceec-------------hhHhcccCCC
Confidence 5899999999999999999999999999999988765433211 000010 1122336789
Q ss_pred CEEEEeccCCh
Q 008604 228 DMVIEAIIENV 238 (560)
Q Consensus 228 DlVIeav~e~~ 238 (560)
|+||.|+|...
T Consensus 392 DiVInatP~g~ 402 (477)
T PRK09310 392 DIIINCLPPSV 402 (477)
T ss_pred CEEEEcCCCCC
Confidence 99999998654
No 321
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.53 E-value=0.0093 Score=64.71 Aligned_cols=41 Identities=20% Similarity=0.090 Sum_probs=37.6
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008604 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (560)
Q Consensus 147 ~~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~ 187 (560)
-.+|.|+|+|.+|...++.+...|.+|+++|+++++++.+.
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~ae 205 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVE 205 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 47999999999999999999999999999999999987654
No 322
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=96.51 E-value=0.013 Score=57.66 Aligned_cols=63 Identities=21% Similarity=0.249 Sum_probs=43.7
Q ss_pred eEEEEEcCccchHHHHHHHHhCC---Cc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 008604 148 KKVAILGGGLMGSGIATALILSN---YP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G---~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (560)
.||+|||+|.||..++..+.+.+ ++ +.++++++++.+.... .....+++++
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~-------------------------~~~~~~~l~~ 57 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAG-------------------------RVALLDGLPG 57 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhc-------------------------cCcccCCHHH
Confidence 68999999999999999987643 54 4457777755443210 1223445555
Q ss_pred c--cCCCEEEEecc
Q 008604 224 F--KDVDMVIEAII 235 (560)
Q Consensus 224 ~--~~aDlVIeav~ 235 (560)
+ ..+|+||||..
T Consensus 58 ll~~~~DlVVE~A~ 71 (267)
T PRK13301 58 LLAWRPDLVVEAAG 71 (267)
T ss_pred HhhcCCCEEEECCC
Confidence 3 67999999997
No 323
>PRK08339 short chain dehydrogenase; Provisional
Probab=96.45 E-value=0.033 Score=55.47 Aligned_cols=81 Identities=21% Similarity=0.252 Sum_probs=51.9
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHH---HHHHcCCCCHHHHHhhhcccccccCccc
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQ---SRVKKGKMTQEKFEKTISLLTGVLDYES 223 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~---~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (560)
+.+.|.|+ |.+|..+|..|++.|++|++.+++.+.++...+.+..... ..+..+..+++++++.++.+. .
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~------~ 82 (263)
T PRK08339 9 KLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELK------N 82 (263)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHH------h
Confidence 34566666 8899999999999999999999998887766554432110 012223344445555444321 2
Q ss_pred ccCCCEEEEec
Q 008604 224 FKDVDMVIEAI 234 (560)
Q Consensus 224 ~~~aDlVIeav 234 (560)
+...|++|.+.
T Consensus 83 ~g~iD~lv~na 93 (263)
T PRK08339 83 IGEPDIFFFST 93 (263)
T ss_pred hCCCcEEEECC
Confidence 45678888765
No 324
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=96.45 E-value=0.0071 Score=60.64 Aligned_cols=42 Identities=24% Similarity=0.204 Sum_probs=37.4
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHH
Q 008604 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGR 189 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~~~ 189 (560)
++|.|+|+|.++++++..|++.|. ++++++|+.+++++..+.
T Consensus 127 ~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~ 169 (283)
T COG0169 127 KRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADL 169 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Confidence 689999999999999999999995 799999999988765543
No 325
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=96.44 E-value=0.006 Score=65.15 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=34.5
Q ss_pred eEEEEEcCccchHHHHHHHHhCC-CcEEEEeCCHHHHHH
Q 008604 148 KKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEA 185 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G-~~V~l~d~~~~~~~~ 185 (560)
++|+|||+|.||..++..|...| .+|+++|++.++++.
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~ 219 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAED 219 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHH
Confidence 68999999999999999999999 789999999887653
No 326
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.44 E-value=0.0073 Score=57.81 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=30.3
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCC
Q 008604 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN 179 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~-~V~l~d~~ 179 (560)
++|.|||+|.+|+.+|..|+..|. +++++|.+
T Consensus 22 ~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 589999999999999999999997 89999987
No 327
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.43 E-value=0.13 Score=52.63 Aligned_cols=40 Identities=28% Similarity=0.198 Sum_probs=34.3
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~ 187 (560)
++|+|+|+|.+|..-.+.....|.+|+.+|+++++++.++
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~ 207 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAK 207 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHH
Confidence 6899999998887666766668999999999999987664
No 328
>PRK08618 ornithine cyclodeaminase; Validated
Probab=96.42 E-value=0.0073 Score=62.31 Aligned_cols=91 Identities=12% Similarity=0.145 Sum_probs=59.0
Q ss_pred ceEEEEEcCccchHHHHHHHHh-CC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 008604 147 VKKVAILGGGLMGSGIATALIL-SN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (560)
Q Consensus 147 ~~~V~VIG~G~mG~~iA~~l~~-~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (560)
.++|+|||+|.+|...+..++. .+ -+|.++|+++++.++..+++...+ + . .+....++ +.
T Consensus 127 ~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~------~-~----------~~~~~~~~~~~ 189 (325)
T PRK08618 127 AKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKF------N-T----------EIYVVNSADEA 189 (325)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhc------C-C----------cEEEeCCHHHH
Confidence 4689999999999998877653 45 479999999998776554332110 1 0 11223343 45
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeecc
Q 008604 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASN 261 (560)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sn 261 (560)
+.++|+||.|.|.. ..++. +.+++++.|.+.
T Consensus 190 ~~~aDiVi~aT~s~----~p~i~---~~l~~G~hV~~i 220 (325)
T PRK08618 190 IEEADIIVTVTNAK----TPVFS---EKLKKGVHINAV 220 (325)
T ss_pred HhcCCEEEEccCCC----CcchH---HhcCCCcEEEec
Confidence 78899999998744 23332 345677766443
No 329
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=96.39 E-value=0.012 Score=51.30 Aligned_cols=100 Identities=20% Similarity=0.169 Sum_probs=59.3
Q ss_pred EEEEEcC-ccchHHHHHHHHhC-CCcEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc--
Q 008604 149 KVAILGG-GLMGSGIATALILS-NYPVILK-EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-- 223 (560)
Q Consensus 149 ~V~VIG~-G~mG~~iA~~l~~~-G~~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-- 223 (560)
||+|||+ |.+|..++..+... +++|+.+ +++.+..+... . ..+.++. .+....+.+.
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~----~------~~~~~~~--------~~~~~~~~~~~~ 62 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVS----E------AGPHLKG--------EVVLELEPEDFE 62 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHH----H------HCccccc--------ccccccccCChh
Confidence 5899995 99999999999885 8888876 54432211111 0 0011100 0000111122
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccHH
Q 008604 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN 268 (560)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~ 268 (560)
..++|+||.|+|.+...+. ...+...+.+++++++.+|++...
T Consensus 63 ~~~~DvV~~~~~~~~~~~~--~~~~~~~~~~g~~viD~s~~~~~~ 105 (122)
T smart00859 63 ELAVDIVFLALPHGVSKEI--APLLPKAAEAGVKVIDLSSAFRMD 105 (122)
T ss_pred hcCCCEEEEcCCcHHHHHH--HHHHHhhhcCCCEEEECCccccCC
Confidence 2489999999997754432 223344567899998888877654
No 330
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=96.33 E-value=0.0045 Score=66.25 Aligned_cols=38 Identities=26% Similarity=0.326 Sum_probs=34.6
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHH
Q 008604 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEA 185 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~ 185 (560)
++|+|||+|.||..++..+...|+ +|+++++++++++.
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~ 221 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEE 221 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHH
Confidence 689999999999999999999997 79999999987654
No 331
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=96.32 E-value=0.018 Score=50.52 Aligned_cols=102 Identities=20% Similarity=0.168 Sum_probs=57.0
Q ss_pred eEEEEEcC-ccchHHHHHHHHh-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-c
Q 008604 148 KKVAILGG-GLMGSGIATALIL-SNYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-S 223 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~-~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~ 223 (560)
.||+|+|+ |.||+.|+..+.. .|++++ .+|++++.... +.+ ......+ -..+..+++++ .
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g--~d~----g~~~~~~----------~~~~~v~~~l~~~ 64 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVG--KDV----GELAGIG----------PLGVPVTDDLEEL 64 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTT--SBC----HHHCTSS----------T-SSBEBS-HHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCccccc--chh----hhhhCcC----------CcccccchhHHHh
Confidence 48999999 9999999999998 689854 67877622110 000 0000000 01233345554 3
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccHHHH
Q 008604 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLI 270 (560)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~~l 270 (560)
+..+|+||+... ++.-...++...+ .+.-+++.|++++-.++
T Consensus 65 ~~~~DVvIDfT~--p~~~~~~~~~~~~---~g~~~ViGTTG~~~~~~ 106 (124)
T PF01113_consen 65 LEEADVVIDFTN--PDAVYDNLEYALK---HGVPLVIGTTGFSDEQI 106 (124)
T ss_dssp TTH-SEEEEES---HHHHHHHHHHHHH---HT-EEEEE-SSSHHHHH
T ss_pred cccCCEEEEcCC--hHHhHHHHHHHHh---CCCCEEEECCCCCHHHH
Confidence 667999999873 3333344444333 36667777888875543
No 332
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=96.31 E-value=0.057 Score=53.70 Aligned_cols=88 Identities=22% Similarity=0.216 Sum_probs=65.0
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 008604 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (560)
Q Consensus 147 ~~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (560)
-++|+|||.|.-|.+-|..|..+|.+|++--+..... +.+..+.| +.+-+--++++.
T Consensus 18 gK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s----------~~kA~~dG-------------f~V~~v~ea~k~ 74 (338)
T COG0059 18 GKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSS----------WKKAKEDG-------------FKVYTVEEAAKR 74 (338)
T ss_pred CCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchh----------HHHHHhcC-------------CEeecHHHHhhc
Confidence 3699999999999999999999999998866544331 11222333 122222367899
Q ss_pred CCEEEEeccCChHHHHHHHH-HHHhhcCCCceee
Q 008604 227 VDMVIEAIIENVSLKQQIFA-DLEKYCPPHCILA 259 (560)
Q Consensus 227 aDlVIeav~e~~~~k~~~~~-~l~~~~~~~~ii~ 259 (560)
+|+|+.-+|+. +..++++ +|.+.+..+..+.
T Consensus 75 ADvim~L~PDe--~q~~vy~~~I~p~Lk~G~aL~ 106 (338)
T COG0059 75 ADVVMILLPDE--QQKEVYEKEIAPNLKEGAALG 106 (338)
T ss_pred CCEEEEeCchh--hHHHHHHHHhhhhhcCCceEE
Confidence 99999999954 5567777 7999999998764
No 333
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=96.30 E-value=0.0044 Score=54.07 Aligned_cols=99 Identities=19% Similarity=0.223 Sum_probs=58.7
Q ss_pred EEEEEc-CccchHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccc-Ccccc
Q 008604 149 KVAILG-GGLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL-DYESF 224 (560)
Q Consensus 149 ~V~VIG-~G~mG~~iA~~l~~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~ 224 (560)
||+||| .|.+|..+...|+++ .++++ ++.++.+.-.... ..... ......+.... +.+.+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~--------~~~~~--------~~~~~~~~~~~~~~~~~ 64 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLS--------EVFPH--------PKGFEDLSVEDADPEEL 64 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHH--------HTTGG--------GTTTEEEBEEETSGHHH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeee--------hhccc--------cccccceeEeecchhHh
Confidence 799999 799999999999985 45544 4555542111100 00000 00011222222 44568
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccHH
Q 008604 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN 268 (560)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~ 268 (560)
.++|+||.|++. ....++...+ ...++.|.++++.+...
T Consensus 65 ~~~Dvvf~a~~~--~~~~~~~~~~---~~~g~~ViD~s~~~R~~ 103 (121)
T PF01118_consen 65 SDVDVVFLALPH--GASKELAPKL---LKAGIKVIDLSGDFRLD 103 (121)
T ss_dssp TTESEEEE-SCH--HHHHHHHHHH---HHTTSEEEESSSTTTTS
T ss_pred hcCCEEEecCch--hHHHHHHHHH---hhCCcEEEeCCHHHhCC
Confidence 999999999984 3445555544 45788888888877654
No 334
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=96.29 E-value=0.016 Score=59.72 Aligned_cols=73 Identities=19% Similarity=0.207 Sum_probs=51.3
Q ss_pred ceEEEEEcCccchHHHHHHHH-hCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 008604 147 VKKVAILGGGLMGSGIATALI-LSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (560)
Q Consensus 147 ~~~V~VIG~G~mG~~iA~~l~-~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (560)
.++|+|||+|.+|...+..++ ..+. +|++|++++++++...+++...+ | + .+....+. +.
T Consensus 129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~------g-~----------~v~~~~~~~~a 191 (326)
T TIGR02992 129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLL------G-I----------DVTAATDPRAA 191 (326)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhc------C-c----------eEEEeCCHHHH
Confidence 368999999999999999887 4674 69999999998876554432110 1 0 12223344 35
Q ss_pred ccCCCEEEEeccC
Q 008604 224 FKDVDMVIEAIIE 236 (560)
Q Consensus 224 ~~~aDlVIeav~e 236 (560)
+.+||+||.|.+.
T Consensus 192 v~~aDiVvtaT~s 204 (326)
T TIGR02992 192 MSGADIIVTTTPS 204 (326)
T ss_pred hccCCEEEEecCC
Confidence 7899999999874
No 335
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.28 E-value=0.0071 Score=62.55 Aligned_cols=33 Identities=27% Similarity=0.467 Sum_probs=31.0
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCH
Q 008604 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~-~V~l~d~~~ 180 (560)
++|.|||+|.+|+.+|..|+++|+ +++++|.+.
T Consensus 25 ~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 589999999999999999999998 899999985
No 336
>PLN00203 glutamyl-tRNA reductase
Probab=96.23 E-value=0.0056 Score=66.71 Aligned_cols=40 Identities=20% Similarity=0.336 Sum_probs=35.8
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHH
Q 008604 147 VKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAG 186 (560)
Q Consensus 147 ~~~V~VIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~ 186 (560)
-++|+|||+|.||..++..|...|. +|++++++.++++..
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~L 306 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAAL 306 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHH
Confidence 4689999999999999999999997 699999999887654
No 337
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=96.23 E-value=0.0045 Score=65.47 Aligned_cols=38 Identities=29% Similarity=0.395 Sum_probs=32.2
Q ss_pred EEEEcCccchHHHHHHHHhCC-C-cEEEEeCCHHHHHHHH
Q 008604 150 VAILGGGLMGSGIATALILSN-Y-PVILKEVNEKFLEAGI 187 (560)
Q Consensus 150 V~VIG~G~mG~~iA~~l~~~G-~-~V~l~d~~~~~~~~~~ 187 (560)
|.|||+|.+|+.++..|++.+ + +|++.|+|.+++++..
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~ 40 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLA 40 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHH
Confidence 789999999999999999986 5 8999999999987654
No 338
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=96.18 E-value=0.034 Score=65.15 Aligned_cols=77 Identities=22% Similarity=0.242 Sum_probs=52.1
Q ss_pred cccceEEEEEcCccchHHHHHHHHhC-CCc-------------EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Q 008604 144 PRRVKKVAILGGGLMGSGIATALILS-NYP-------------VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFE 209 (560)
Q Consensus 144 ~~~~~~V~VIG~G~mG~~iA~~l~~~-G~~-------------V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~ 209 (560)
...+++|+|||+|.||..+|..|++. +++ |++.|++.+.+++..+.. .+ .+
T Consensus 566 ~~~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~---------~~-~~----- 630 (1042)
T PLN02819 566 TKKSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGI---------EN-AE----- 630 (1042)
T ss_pred cccCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhc---------CC-Cc-----
Confidence 34578999999999999999999875 444 999999988776543211 01 00
Q ss_pred hhhccccc-ccCcc----cccCCCEEEEeccCChH
Q 008604 210 KTISLLTG-VLDYE----SFKDVDMVIEAIIENVS 239 (560)
Q Consensus 210 ~~~~~i~~-~~~~~----~~~~aDlVIeav~e~~~ 239 (560)
.+.. .+|.+ .++++|+||.|+|....
T Consensus 631 ----~v~lDv~D~e~L~~~v~~~DaVIsalP~~~H 661 (1042)
T PLN02819 631 ----AVQLDVSDSESLLKYVSQVDVVISLLPASCH 661 (1042)
T ss_pred ----eEEeecCCHHHHHHhhcCCCEEEECCCchhh
Confidence 0111 12222 24679999999997554
No 339
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.16 E-value=0.011 Score=58.87 Aligned_cols=100 Identities=19% Similarity=0.198 Sum_probs=53.5
Q ss_pred ceEEEEEcCccchHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-cC---
Q 008604 147 VKKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LD--- 220 (560)
Q Consensus 147 ~~~V~VIG~G~mG~~iA~~l~~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~--- 220 (560)
.++|++||.|.+-...-...... |..|..+|+++++.+.+.+-+.... .+. .++.+. .|
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~--~L~-------------~~m~f~~~d~~~ 185 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDL--GLS-------------KRMSFITADVLD 185 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH-----HH--------------SSEEEEES-GGG
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcc--ccc-------------CCeEEEecchhc
Confidence 46999999999976554444333 5679999999999887654333111 011 112221 12
Q ss_pred c-ccccCCCEEEEecc--CChHHHHHHHHHHHhhcCCCceeecc
Q 008604 221 Y-ESFKDVDMVIEAII--ENVSLKQQIFADLEKYCPPHCILASN 261 (560)
Q Consensus 221 ~-~~~~~aDlVIeav~--e~~~~k~~~~~~l~~~~~~~~ii~sn 261 (560)
. .++.++|+|+.|.- .+.+-|.+++..|.+++++|++|+.-
T Consensus 186 ~~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 186 VTYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp G-GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred cccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 1 35788999999863 34557999999999999999988754
No 340
>PRK06153 hypothetical protein; Provisional
Probab=96.15 E-value=0.01 Score=61.61 Aligned_cols=32 Identities=25% Similarity=0.291 Sum_probs=29.8
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCC
Q 008604 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN 179 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~-~V~l~d~~ 179 (560)
.+|+|||+|..|+.++..|++.|. +++++|-+
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 589999999999999999999997 89999976
No 341
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=96.13 E-value=0.23 Score=48.61 Aligned_cols=106 Identities=16% Similarity=0.155 Sum_probs=73.5
Q ss_pred ccCcccccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccHHHHHhhc---cC-CCcEeecccCCCCCCCC
Q 008604 218 VLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERT---YS-KDRIVGAHFFSPAHVMP 293 (560)
Q Consensus 218 ~~~~~~~~~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~~la~~~---~~-~~r~~g~hf~~P~~~~~ 293 (560)
++|.++++++|++|.-.|..- ..-.+++++..++++++|| +||.++|...+...+ .+ .-.+..+|+-. +..++
T Consensus 133 sDD~EAvk~aei~I~ftPfG~-~t~~Iikki~~~ipEgAII-~~tCTIpt~~ly~~le~l~R~DvgIsS~HPaa-VPgt~ 209 (342)
T PRK00961 133 TDDREAVADADIVITWLPKGG-MQPDIIEKFADDIKEGAIV-THACTIPTTKFAKIFKDLGRDDLNVTSYHPGA-VPEMK 209 (342)
T ss_pred cCcHHHhcCCCEEEEecCCCC-CchHHHHHHHhhCCCCCEE-eccccCCHHHHHHHHHHhCcccCCeeccCCCC-CCCCC
Confidence 456789999999999998653 2346778889999999988 488888877655444 22 23344445432 11222
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCceEEec
Q 008604 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (560)
Q Consensus 294 lvEiv~g~~t~~e~~~~~~~l~~~lGk~~i~v~ 326 (560)
---.+.-...++|.++.+..+.+..|+.++.+.
T Consensus 210 Gq~~i~egyAtEEqI~klveL~~sa~k~ay~~P 242 (342)
T PRK00961 210 GQVYIAEGYADEEAVEKLYEIGKKARGNAFKMP 242 (342)
T ss_pred CceecccccCCHHHHHHHHHHHHHhCCCeeecc
Confidence 111223345789999999999999999999985
No 342
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.10 E-value=0.0076 Score=63.19 Aligned_cols=41 Identities=24% Similarity=0.251 Sum_probs=36.6
Q ss_pred eEEEEEcCccchHHHHHHHHhCC-CcEEEEeCCHHHHHHHHH
Q 008604 148 KKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIG 188 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G-~~V~l~d~~~~~~~~~~~ 188 (560)
++|.|||+|-||..+|.+|+.+| ..|++.+|+.+++.+..+
T Consensus 179 ~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~ 220 (414)
T COG0373 179 KKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAK 220 (414)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHH
Confidence 58999999999999999999999 689999999998876543
No 343
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=96.09 E-value=0.013 Score=63.36 Aligned_cols=41 Identities=20% Similarity=0.103 Sum_probs=36.9
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008604 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (560)
Q Consensus 147 ~~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~ 187 (560)
-.+|.|+|+|.+|...+..+...|..|+++|+++++++.+.
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~ 204 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQ 204 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 37999999999999999999999999999999999876553
No 344
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=96.07 E-value=0.068 Score=53.96 Aligned_cols=104 Identities=16% Similarity=0.044 Sum_probs=63.9
Q ss_pred chHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhhhcccccccCcccccCCCEEEEeccC
Q 008604 158 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIE 236 (560)
Q Consensus 158 mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~~~~aDlVIeav~e 236 (560)
||+-+|..|+++|++|++++++ +..+... +.|. +....-......+..+++.+.+..+|+||.|+.-
T Consensus 2 iG~~~a~~L~~~G~~V~l~~r~-~~~~~i~-----------~~Gl~i~~~~~~~~~~~~~~~~~~~~~~~~D~iiv~vKs 69 (293)
T TIGR00745 2 VGSLYGAYLARAGHDVTLLARG-EQLEALN-----------QEGLRIVSLGGEFQFRPVSAATSPEELPPADLVIITVKA 69 (293)
T ss_pred chHHHHHHHHhCCCcEEEEecH-HHHHHHH-----------HCCcEEEecCCcEEEcccccccChhhcCCCCEEEEeccc
Confidence 7999999999999999999997 4333221 1121 0000000000022334455557789999999974
Q ss_pred ChHHHHHHHHHHHhhcCCCceeeccCCcccH-HHHHhhcc
Q 008604 237 NVSLKQQIFADLEKYCPPHCILASNTSTIDL-NLIGERTY 275 (560)
Q Consensus 237 ~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i-~~la~~~~ 275 (560)
. + -..+++.+.+++.++++|.+..-++.. ..+...++
T Consensus 70 ~-~-~~~~l~~l~~~l~~~~~iv~~qNG~g~~~~l~~~~~ 107 (293)
T TIGR00745 70 Y-Q-TEEAAALLLPLIGKNTKVLFLQNGLGHEERLRELLP 107 (293)
T ss_pred h-h-HHHHHHHhHhhcCCCCEEEEccCCCCCHHHHHHHhC
Confidence 3 2 356678888888888877765556653 34444443
No 345
>PRK12828 short chain dehydrogenase; Provisional
Probab=96.07 E-value=0.0092 Score=57.92 Aligned_cols=39 Identities=33% Similarity=0.290 Sum_probs=33.9
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~ 186 (560)
++|.|+|+ |.+|..++..+++.|++|++.+++++.....
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~ 47 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQT 47 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHH
Confidence 57888876 9999999999999999999999998765543
No 346
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=96.04 E-value=0.042 Score=53.53 Aligned_cols=32 Identities=25% Similarity=0.427 Sum_probs=30.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCc---EEEEeCC
Q 008604 148 KKVAILGGGLMGSGIATALILSNYP---VILKEVN 179 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~---V~l~d~~ 179 (560)
++|.|+|+|.+|.++|..|...|.+ |+++|++
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 5899999999999999999999985 9999999
No 347
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=96.02 E-value=0.059 Score=56.79 Aligned_cols=75 Identities=21% Similarity=0.270 Sum_probs=49.7
Q ss_pred eEEEEEcCccchHHHH-HH-HHh----CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 008604 148 KKVAILGGGLMGSGIA-TA-LIL----SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA-~~-l~~----~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (560)
.||+|||+|..+.+-- .. +.+ .+.++.++|+++++++. +....++.+++-... -+++.++|.
T Consensus 4 ~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~----i~~~~~~~v~~~g~~--------~kv~~ttd~ 71 (442)
T COG1486 4 FKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKI----IAILAKKLVEEAGAP--------VKVEATTDR 71 (442)
T ss_pred ceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHH----HHHHHHHHHHhhCCC--------eEEEEecCH
Confidence 5899999998765432 22 222 26799999999998872 223333444332221 245667776
Q ss_pred -ccccCCCEEEEec
Q 008604 222 -ESFKDVDMVIEAI 234 (560)
Q Consensus 222 -~~~~~aDlVIeav 234 (560)
+++.+||+||.++
T Consensus 72 ~eAl~gAdfVi~~~ 85 (442)
T COG1486 72 REALEGADFVITQI 85 (442)
T ss_pred HHHhcCCCEEEEEE
Confidence 6799999999987
No 348
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=95.98 E-value=0.028 Score=48.31 Aligned_cols=88 Identities=22% Similarity=0.239 Sum_probs=56.5
Q ss_pred EEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-cC---c--cc
Q 008604 150 VAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LD---Y--ES 223 (560)
Q Consensus 150 V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~---~--~~ 223 (560)
|.|+|.|.+|..++..|.+.+.+|+++|.+++..+.+.+ .|. .-+.+. ++ + ..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~-----------~~~----------~~i~gd~~~~~~l~~a~ 59 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE-----------EGV----------EVIYGDATDPEVLERAG 59 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH-----------TTS----------EEEES-TTSHHHHHHTT
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh-----------ccc----------ccccccchhhhHHhhcC
Confidence 679999999999999999988899999999998766542 221 111111 11 1 23
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceee
Q 008604 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILA 259 (560)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~ 259 (560)
+.+|+.||-+..++ +....+...+.+..+.-.|++
T Consensus 60 i~~a~~vv~~~~~d-~~n~~~~~~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 60 IEKADAVVILTDDD-EENLLIALLARELNPDIRIIA 94 (116)
T ss_dssp GGCESEEEEESSSH-HHHHHHHHHHHHHTTTSEEEE
T ss_pred ccccCEEEEccCCH-HHHHHHHHHHHHHCCCCeEEE
Confidence 67899999888755 333344344455445445554
No 349
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.98 E-value=0.086 Score=52.36 Aligned_cols=81 Identities=14% Similarity=0.123 Sum_probs=49.5
Q ss_pred eEEEEEcCc---cchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHH--HHHHcCCCCHHHHHhhhcccccccCcc
Q 008604 148 KKVAILGGG---LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQ--SRVKKGKMTQEKFEKTISLLTGVLDYE 222 (560)
Q Consensus 148 ~~V~VIG~G---~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~--~~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (560)
+.+.|.|++ .+|..+|..|++.|++|++.+++.. .++..+.+..... ..+..+..+++++++.++.+. +
T Consensus 9 k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~-~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~-----~ 82 (260)
T PRK06603 9 KKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEV-LEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIK-----E 82 (260)
T ss_pred cEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchH-HHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHH-----H
Confidence 345566885 5999999999999999999998843 2333333322110 112334455555655554432 3
Q ss_pred cccCCCEEEEec
Q 008604 223 SFKDVDMVIEAI 234 (560)
Q Consensus 223 ~~~~aDlVIeav 234 (560)
.+...|++|.++
T Consensus 83 ~~g~iDilVnna 94 (260)
T PRK06603 83 KWGSFDFLLHGM 94 (260)
T ss_pred HcCCccEEEEcc
Confidence 356788888876
No 350
>PRK06194 hypothetical protein; Provisional
Probab=95.98 E-value=0.026 Score=56.76 Aligned_cols=42 Identities=19% Similarity=0.267 Sum_probs=35.4
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR 189 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~ 189 (560)
++|.|.|+ |.+|..+|..|++.|++|+++|++.+.+++..+.
T Consensus 7 k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~ 49 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAE 49 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH
Confidence 56788876 8999999999999999999999998776655443
No 351
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=95.97 E-value=0.058 Score=55.03 Aligned_cols=33 Identities=18% Similarity=0.329 Sum_probs=28.5
Q ss_pred eEEEEEcCccchHHHHHHHHhC-CCcEE-EEeCCH
Q 008604 148 KKVAILGGGLMGSGIATALILS-NYPVI-LKEVNE 180 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~-G~~V~-l~d~~~ 180 (560)
-||+|||.|.||..++..+.+. +++++ ++|+++
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~ 38 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRG 38 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCc
Confidence 5899999999999999988765 88877 479985
No 352
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.024 Score=56.20 Aligned_cols=111 Identities=20% Similarity=0.264 Sum_probs=68.5
Q ss_pred HHHHhccCCCCCCCCCCCCCCcccceEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcC
Q 008604 123 HIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKG 201 (560)
Q Consensus 123 ~aF~~kr~~~~~~~~~~~~~~~~~~~~V~VIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g 201 (560)
.+||....+.|.. -+=|.|||+|.+|+-.+..|+++|. ++.++|.++-.+...-.. ....+.+-|
T Consensus 61 ~aFfGee~m~kl~-----------~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrH---s~Atl~DVG 126 (430)
T KOG2018|consen 61 YAFFGEEGMEKLT-----------NSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRH---SCATLADVG 126 (430)
T ss_pred HhhhhhhHHHHhc-----------CcEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhhhhh---hhhhHhhcC
Confidence 3677766665531 2468999999999999999999997 588889876555432211 112222223
Q ss_pred CCCHHHHHhhhcccccc------------cCccc--ccCCCEEEEeccCChHHHHHHHHHH
Q 008604 202 KMTQEKFEKTISLLTGV------------LDYES--FKDVDMVIEAIIENVSLKQQIFADL 248 (560)
Q Consensus 202 ~~~~~~~~~~~~~i~~~------------~~~~~--~~~aDlVIeav~e~~~~k~~~~~~l 248 (560)
.-.......++..|.+. ++-++ .++.|+|++|+ +|++.|-.+++-.
T Consensus 127 ~PK~~clkkh~skiaPw~eIdar~~l~~~~s~edll~gnPdFvvDci-DNidtKVdLL~y~ 186 (430)
T KOG2018|consen 127 TPKVMCLKKHFSKIAPWCEIDARNMLWTSSSEEDLLSGNPDFVVDCI-DNIDTKVDLLEYC 186 (430)
T ss_pred CchHHHHHHHHHhhCccceecHHHhhcCCCchhhhhcCCCCeEeEhh-hhhhhhhHHHHHH
Confidence 22222223333333221 12222 47899999999 5889998887754
No 353
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=95.94 E-value=0.38 Score=47.29 Aligned_cols=106 Identities=16% Similarity=0.169 Sum_probs=72.7
Q ss_pred ccCcccccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccHHHHHh---hccC-CCcEeecccCCCCCCCC
Q 008604 218 VLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGE---RTYS-KDRIVGAHFFSPAHVMP 293 (560)
Q Consensus 218 ~~~~~~~~~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~~la~---~~~~-~~r~~g~hf~~P~~~~~ 293 (560)
++|.++++++|++|.-.|..- ..-.+++++..++++++|| +||.++|...+.. .+.+ .-.+..+|+-. +..++
T Consensus 131 sDD~EAv~~aei~I~ftPfG~-~q~~Iikkii~~lpEgAII-~~tCTIpt~~ly~ilE~l~R~DvgVsS~HPaa-VPgt~ 207 (340)
T TIGR01723 131 TDDREAVEDADIIITWLPKGN-KQPDIIKKFIDDIPEGAIV-THACTIPTTKFAKIFEDLGREDLNVTSYHPGC-VPEMK 207 (340)
T ss_pred cCcHHHhcCCCEEEEEcCCCC-CchHHHHHHHhhCCCCCEE-eccccCChHHHHHHHHhhCcccCCeeccCCCC-CCCCC
Confidence 456789999999999998653 2346778888999999988 4888888764443 3332 23344455532 11122
Q ss_pred eEEEEeCCCCcHHHHHHHHHHHHhcCCceEEec
Q 008604 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (560)
Q Consensus 294 lvEiv~g~~t~~e~~~~~~~l~~~lGk~~i~v~ 326 (560)
---++.-...+++.++.+..+.+..|+.++.+.
T Consensus 208 ~q~Yi~egyAtEEqI~klveL~~sa~k~ay~~P 240 (340)
T TIGR01723 208 GQVYIAEGYASEEAVNKLYELGKKARGKAFKMP 240 (340)
T ss_pred CceEeecccCCHHHHHHHHHHHHHhCCCeeecc
Confidence 111222345789999999999999999999985
No 354
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=95.93 E-value=0.0093 Score=63.38 Aligned_cols=68 Identities=16% Similarity=0.192 Sum_probs=48.9
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC-ccccc
Q 008604 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD-YESFK 225 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~~~ 225 (560)
++|.|||+|.||..++..|+..|. ++++++|+.++.+...+.+ ..+. ....++ .+.+.
T Consensus 182 kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~--------~~~~------------~~~~~~l~~~l~ 241 (414)
T PRK13940 182 KNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAF--------RNAS------------AHYLSELPQLIK 241 (414)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHh--------cCCe------------EecHHHHHHHhc
Confidence 589999999999999999999995 7999999988765433211 0000 111122 24578
Q ss_pred CCCEEEEecc
Q 008604 226 DVDMVIEAII 235 (560)
Q Consensus 226 ~aDlVIeav~ 235 (560)
++|+||.|.+
T Consensus 242 ~aDiVI~aT~ 251 (414)
T PRK13940 242 KADIIIAAVN 251 (414)
T ss_pred cCCEEEECcC
Confidence 8999999985
No 355
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=95.93 E-value=0.014 Score=57.85 Aligned_cols=81 Identities=16% Similarity=0.195 Sum_probs=51.0
Q ss_pred EEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHH-HHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 008604 149 KVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANL-QSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (560)
Q Consensus 149 ~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~-~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (560)
+|.|.|+ |.+|.++|..|++.|++|++.+++++.+++..+.+...- ...+..+..+.+++++.+..+. +.+..
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~-----~~~g~ 76 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAW-----ELLGG 76 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHH-----HhcCC
Confidence 6888876 889999999999999999999999988776655443210 0011222333444443333221 22455
Q ss_pred CCEEEEec
Q 008604 227 VDMVIEAI 234 (560)
Q Consensus 227 aDlVIeav 234 (560)
.|+||.+.
T Consensus 77 id~li~na 84 (259)
T PRK08340 77 IDALVWNA 84 (259)
T ss_pred CCEEEECC
Confidence 67777764
No 356
>PRK12829 short chain dehydrogenase; Provisional
Probab=95.91 E-value=0.026 Score=55.86 Aligned_cols=83 Identities=20% Similarity=0.262 Sum_probs=50.7
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (560)
++|.|+|+ |.+|..++..|+.+|++|++.+++.+.++...+...+.-...+..+..+++++...++.+. +.+.+
T Consensus 12 ~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~-----~~~~~ 86 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGAKVTATVADVADPAQVERVFDTAV-----ERFGG 86 (264)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCceEEEEccCCCHHHHHHHHHHHH-----HHhCC
Confidence 68899977 9999999999999999999999998766543322111000001122223333333322221 22457
Q ss_pred CCEEEEecc
Q 008604 227 VDMVIEAII 235 (560)
Q Consensus 227 aDlVIeav~ 235 (560)
+|.||.+..
T Consensus 87 ~d~vi~~ag 95 (264)
T PRK12829 87 LDVLVNNAG 95 (264)
T ss_pred CCEEEECCC
Confidence 899998764
No 357
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=95.91 E-value=0.014 Score=58.74 Aligned_cols=41 Identities=20% Similarity=0.293 Sum_probs=36.0
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHHH
Q 008604 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIG 188 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~~ 188 (560)
++|.|+|+|..|++|+..|+..|. +|+++||+.++.+...+
T Consensus 128 k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~ 169 (283)
T PRK14027 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALAD 169 (283)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHH
Confidence 589999999999999999999997 79999999988765443
No 358
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=95.91 E-value=0.014 Score=59.18 Aligned_cols=34 Identities=18% Similarity=0.386 Sum_probs=31.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCc-EEEEeCCHH
Q 008604 148 KKVAILGGGLMGSGIATALILSNYP-VILKEVNEK 181 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~-V~l~d~~~~ 181 (560)
+++.|+|+|.+|.+|+..|+..|++ |++++|+.+
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~ 161 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDD 161 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCch
Confidence 5789999999999999999999997 999999973
No 359
>PRK08291 ectoine utilization protein EutC; Validated
Probab=95.91 E-value=0.021 Score=59.02 Aligned_cols=73 Identities=23% Similarity=0.252 Sum_probs=50.7
Q ss_pred ceEEEEEcCccchHHHHHHHHh-CC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 008604 147 VKKVAILGGGLMGSGIATALIL-SN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (560)
Q Consensus 147 ~~~V~VIG~G~mG~~iA~~l~~-~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (560)
.++|+|||+|.+|...+..+.. .+ .+|.+|++++++++...+++.+.+ | + .+....++ +.
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~------g-~----------~v~~~~d~~~a 194 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAEL------G-I----------PVTVARDVHEA 194 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhcc------C-c----------eEEEeCCHHHH
Confidence 4689999999999999888875 45 579999999998876554332110 1 0 12223444 45
Q ss_pred ccCCCEEEEeccC
Q 008604 224 FKDVDMVIEAIIE 236 (560)
Q Consensus 224 ~~~aDlVIeav~e 236 (560)
+.++|+||.|.+-
T Consensus 195 l~~aDiVi~aT~s 207 (330)
T PRK08291 195 VAGADIIVTTTPS 207 (330)
T ss_pred HccCCEEEEeeCC
Confidence 7889999988864
No 360
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.88 E-value=0.014 Score=58.53 Aligned_cols=71 Identities=15% Similarity=0.266 Sum_probs=52.2
Q ss_pred eEEEEEcCcc-chHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 008604 148 KKVAILGGGL-MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (560)
Q Consensus 148 ~~V~VIG~G~-mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (560)
++|.|||.|. +|..+|..|.+.|.+|++.+.....+. +.+++
T Consensus 159 k~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~~l~-------------------------------------~~~~~ 201 (286)
T PRK14175 159 KNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMA-------------------------------------SYLKD 201 (286)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHH-------------------------------------HHHhh
Confidence 6999999977 999999999999999999986532221 23678
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccC
Q 008604 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262 (560)
Q Consensus 227 aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~snt 262 (560)
||+||.++.-.--++. +.+++++++..-.
T Consensus 202 ADIVIsAvg~p~~i~~-------~~vk~gavVIDvG 230 (286)
T PRK14175 202 ADVIVSAVGKPGLVTK-------DVVKEGAVIIDVG 230 (286)
T ss_pred CCEEEECCCCCcccCH-------HHcCCCcEEEEcC
Confidence 9999999964321222 2467788776533
No 361
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.87 E-value=0.25 Score=53.90 Aligned_cols=47 Identities=23% Similarity=0.273 Sum_probs=36.5
Q ss_pred CCCCCCCCCCcccceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHH
Q 008604 134 VPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEK 181 (560)
Q Consensus 134 ~~~~~~~~~~~~~~~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~ 181 (560)
+|++...+.. ..-++|.|||+|..|.++|..|++.|++|+++|.++.
T Consensus 4 ~~~~~~~~~~-~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~ 50 (480)
T PRK01438 4 PPGLTSWHSD-WQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD 50 (480)
T ss_pred ccchhhcccC-cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 3444333432 2346899999999999999999999999999997653
No 362
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=95.84 E-value=0.032 Score=45.42 Aligned_cols=32 Identities=38% Similarity=0.493 Sum_probs=29.0
Q ss_pred ceEEEEEcCccchHHHHHHHHhC-CCcEEEEeC
Q 008604 147 VKKVAILGGGLMGSGIATALILS-NYPVILKEV 178 (560)
Q Consensus 147 ~~~V~VIG~G~mG~~iA~~l~~~-G~~V~l~d~ 178 (560)
-++++|+|+|.+|.+++..+... +.+|.++|+
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 36899999999999999999998 678999987
No 363
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=95.82 E-value=0.11 Score=44.71 Aligned_cols=38 Identities=29% Similarity=0.448 Sum_probs=31.4
Q ss_pred EEEEEcCccchHHHHHHHHhC--CCcEE-EEeCCHHHHHHH
Q 008604 149 KVAILGGGLMGSGIATALILS--NYPVI-LKEVNEKFLEAG 186 (560)
Q Consensus 149 ~V~VIG~G~mG~~iA~~l~~~--G~~V~-l~d~~~~~~~~~ 186 (560)
||+|||+|.+|......+... +.+|+ ++|+++++.+..
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~ 42 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAF 42 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHH
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHH
Confidence 799999999999999888776 56654 799999887654
No 364
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=95.79 E-value=0.013 Score=58.65 Aligned_cols=29 Identities=28% Similarity=0.339 Sum_probs=24.3
Q ss_pred eEEEEEcCccchHHHHHHHHhC-CCcEEEE
Q 008604 148 KKVAILGGGLMGSGIATALILS-NYPVILK 176 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~-G~~V~l~ 176 (560)
.||+|||+|.||..++..+.+. +.++..+
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v 31 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWV 31 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEE
Confidence 5899999999999999998876 6666543
No 365
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=95.77 E-value=0.017 Score=59.79 Aligned_cols=33 Identities=27% Similarity=0.449 Sum_probs=31.0
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCH
Q 008604 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~-~V~l~d~~~ 180 (560)
.+|.|||+|.+|+.+|..|+.+|. +++++|.+.
T Consensus 25 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 25 KHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 589999999999999999999999 899999874
No 366
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=95.76 E-value=0.016 Score=46.31 Aligned_cols=35 Identities=34% Similarity=0.597 Sum_probs=32.5
Q ss_pred EEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHH
Q 008604 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFL 183 (560)
Q Consensus 149 ~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~ 183 (560)
||+|||+|..|.-+|..++..|.+|+++++++.-+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 68999999999999999999999999999987654
No 367
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=95.75 E-value=0.062 Score=61.10 Aligned_cols=95 Identities=12% Similarity=0.117 Sum_probs=75.5
Q ss_pred EEEeccCChHHHHHHHHHHHhhcCCCceeeccCCccc-H-HHHHhhccC-CCcEeecccCCCCC------------CCCe
Q 008604 230 VIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID-L-NLIGERTYS-KDRIVGAHFFSPAH------------VMPL 294 (560)
Q Consensus 230 VIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~-i-~~la~~~~~-~~r~~g~hf~~P~~------------~~~l 294 (560)
||.|+| +..-.++++++.++++++++|++-+|+-. + ..+.+.+.. +.+|+|.||+...+ ....
T Consensus 1 vila~P--v~~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~~~ 78 (673)
T PRK11861 1 VLLAAP--VAQTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVGRN 78 (673)
T ss_pred CEEEcC--HHHHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCCCe
Confidence 678888 77778999999999999999988777753 3 455455443 35799999986432 3467
Q ss_pred EEEEeCCCCcHHHHHHHHHHHHhcCCceEEec
Q 008604 295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326 (560)
Q Consensus 295 vEiv~g~~t~~e~~~~~~~l~~~lGk~~i~v~ 326 (560)
+-+++.+.++++.++.+.+++..+|..++.+.
T Consensus 79 ~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~ 110 (673)
T PRK11861 79 VVLCALPENAPDALARVEAMWRAARADVRAMS 110 (673)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHcCCEEEECC
Confidence 77889999999999999999999998888875
No 368
>PRK06196 oxidoreductase; Provisional
Probab=95.75 E-value=0.021 Score=58.55 Aligned_cols=80 Identities=16% Similarity=0.186 Sum_probs=52.5
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (560)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++.....+.. -..+..+..+.+++.+..+.+. +....
T Consensus 27 k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~~--v~~~~~Dl~d~~~v~~~~~~~~-----~~~~~ 99 (315)
T PRK06196 27 KTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGIDG--VEVVMLDLADLESVRAFAERFL-----DSGRR 99 (315)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhh--CeEEEccCCCHHHHHHHHHHHH-----hcCCC
Confidence 46778877 8999999999999999999999998877655443321 0112233334444444333222 22456
Q ss_pred CCEEEEec
Q 008604 227 VDMVIEAI 234 (560)
Q Consensus 227 aDlVIeav 234 (560)
+|+||.+.
T Consensus 100 iD~li~nA 107 (315)
T PRK06196 100 IDILINNA 107 (315)
T ss_pred CCEEEECC
Confidence 88888876
No 369
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.74 E-value=0.023 Score=57.19 Aligned_cols=33 Identities=21% Similarity=0.347 Sum_probs=30.0
Q ss_pred eEEEEEcCcc-chHHHHHHHHhCCCcEEEEeCCH
Q 008604 148 KKVAILGGGL-MGSGIATALILSNYPVILKEVNE 180 (560)
Q Consensus 148 ~~V~VIG~G~-mG~~iA~~l~~~G~~V~l~d~~~ 180 (560)
++|.|||.|. .|.+++..|.+.|.+|+++++..
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t 193 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNANATVTICHSRT 193 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc
Confidence 5899999997 99999999999999999999743
No 370
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=95.74 E-value=0.04 Score=56.45 Aligned_cols=91 Identities=18% Similarity=0.199 Sum_probs=61.1
Q ss_pred cceEEEEEcCccchHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-c
Q 008604 146 RVKKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E 222 (560)
Q Consensus 146 ~~~~V~VIG~G~mG~~iA~~l~~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 222 (560)
+.+.++|||+|.++......+..- .-+|.+|+++++..++...++.+. +.. .+...++. +
T Consensus 129 da~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~-------~~~----------~v~a~~s~~~ 191 (330)
T COG2423 129 DASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKR-------GGE----------AVGAADSAEE 191 (330)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhh-------cCc----------cceeccCHHH
Confidence 467899999999999999887763 458999999999987765443222 110 12334443 5
Q ss_pred cccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceee
Q 008604 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILA 259 (560)
Q Consensus 223 ~~~~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~ 259 (560)
++.+||+||.|.+.+..+ +. .+++++++.|.
T Consensus 192 av~~aDiIvt~T~s~~Pi----l~--~~~l~~G~hI~ 222 (330)
T COG2423 192 AVEGADIVVTATPSTEPV----LK--AEWLKPGTHIN 222 (330)
T ss_pred HhhcCCEEEEecCCCCCe----ec--HhhcCCCcEEE
Confidence 689999999998754321 11 23455676663
No 371
>PRK07326 short chain dehydrogenase; Provisional
Probab=95.73 E-value=0.014 Score=56.73 Aligned_cols=40 Identities=35% Similarity=0.449 Sum_probs=34.7
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~ 187 (560)
++|.|+|+ |.+|..++..|+..|++|++.+++++.++...
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~ 47 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAA 47 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHH
Confidence 57888876 99999999999999999999999987765543
No 372
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=95.70 E-value=0.022 Score=56.71 Aligned_cols=36 Identities=25% Similarity=0.339 Sum_probs=29.3
Q ss_pred eEEEEEcC-ccchHHHHHHHHhC-CCcEEE-EeCCHHHH
Q 008604 148 KKVAILGG-GLMGSGIATALILS-NYPVIL-KEVNEKFL 183 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~-G~~V~l-~d~~~~~~ 183 (560)
.||+|+|+ |.||..++..+.+. +++|+. +|++++..
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~ 40 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPL 40 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccc
Confidence 58999998 99999999988764 788664 88887644
No 373
>PRK05866 short chain dehydrogenase; Provisional
Probab=95.69 E-value=0.02 Score=58.17 Aligned_cols=42 Identities=21% Similarity=0.306 Sum_probs=35.8
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR 189 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~ 189 (560)
++|.|.|+ |.+|..+|..|++.|++|++.+++.+.++...+.
T Consensus 41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~ 83 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADR 83 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 57888876 9999999999999999999999998877655433
No 374
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=95.65 E-value=0.02 Score=51.39 Aligned_cols=32 Identities=31% Similarity=0.425 Sum_probs=29.4
Q ss_pred EEEEEcCccchHHHHHHHHhCCC-cEEEEeCCH
Q 008604 149 KVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (560)
Q Consensus 149 ~V~VIG~G~mG~~iA~~l~~~G~-~V~l~d~~~ 180 (560)
+|.|||+|.+|+.++..|++.|+ +++++|.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 58999999999999999999998 699999763
No 375
>PRK07831 short chain dehydrogenase; Provisional
Probab=95.65 E-value=0.017 Score=57.28 Aligned_cols=44 Identities=20% Similarity=0.286 Sum_probs=37.0
Q ss_pred ceEEEEEcC-c-cchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 008604 147 VKKVAILGG-G-LMGSGIATALILSNYPVILKEVNEKFLEAGIGRV 190 (560)
Q Consensus 147 ~~~V~VIG~-G-~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i 190 (560)
-+++.|.|+ | .+|..++..|+..|++|++.|++.+.++...+.+
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~ 62 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADEL 62 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence 367888887 6 6999999999999999999999988777665544
No 376
>PRK07062 short chain dehydrogenase; Provisional
Probab=95.64 E-value=0.02 Score=56.80 Aligned_cols=43 Identities=19% Similarity=0.274 Sum_probs=35.4
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV 190 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i 190 (560)
+.+.|.|+ |.+|..+|..|++.|++|++.+++++.++...+.+
T Consensus 9 k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~ 52 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARL 52 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHH
Confidence 35667776 88999999999999999999999998776654443
No 377
>PRK06823 ornithine cyclodeaminase; Validated
Probab=95.62 E-value=0.048 Score=55.84 Aligned_cols=72 Identities=17% Similarity=0.145 Sum_probs=50.5
Q ss_pred ceEEEEEcCccchHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 008604 147 VKKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (560)
Q Consensus 147 ~~~V~VIG~G~mG~~iA~~l~~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (560)
.++++|||+|.++...+..+..- --+|.+||+++++++...+.++ +.+ + .+...++. ++
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~-------~~~-~----------~v~~~~~~~~a 189 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQ-------ALG-F----------AVNTTLDAAEV 189 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHH-------hcC-C----------cEEEECCHHHH
Confidence 56899999999999998877653 3589999999998876543321 111 0 12333444 56
Q ss_pred ccCCCEEEEeccC
Q 008604 224 FKDVDMVIEAIIE 236 (560)
Q Consensus 224 ~~~aDlVIeav~e 236 (560)
+.+||+|+.|.+.
T Consensus 190 v~~ADIV~taT~s 202 (315)
T PRK06823 190 AHAANLIVTTTPS 202 (315)
T ss_pred hcCCCEEEEecCC
Confidence 8899999988763
No 378
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.61 E-value=0.013 Score=58.30 Aligned_cols=43 Identities=26% Similarity=0.316 Sum_probs=33.9
Q ss_pred EEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHH
Q 008604 149 KVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVR 191 (560)
Q Consensus 149 ~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~ 191 (560)
.|.|-|+ +.+|+.||..+++.|..+++||+|.+...+..+.++
T Consensus 40 ~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~ 83 (300)
T KOG1201|consen 40 IVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIR 83 (300)
T ss_pred EEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHH
Confidence 3444455 678999999999999999999999987776555443
No 379
>PRK07825 short chain dehydrogenase; Provisional
Probab=95.61 E-value=0.022 Score=56.91 Aligned_cols=80 Identities=18% Similarity=0.221 Sum_probs=51.8
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (560)
++|.|.|+ |.+|..++..|++.|++|++.+++++.++.....+.. ...+..+..++++.++.+..+. +....
T Consensus 6 ~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~--~~~~~~D~~~~~~~~~~~~~~~-----~~~~~ 78 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAAELGL--VVGGPLDVTDPASFAAFLDAVE-----ADLGP 78 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcc--ceEEEccCCCHHHHHHHHHHHH-----HHcCC
Confidence 46888877 9999999999999999999999999887654333210 0111223334444444443332 22356
Q ss_pred CCEEEEec
Q 008604 227 VDMVIEAI 234 (560)
Q Consensus 227 aDlVIeav 234 (560)
.|++|.+.
T Consensus 79 id~li~~a 86 (273)
T PRK07825 79 IDVLVNNA 86 (273)
T ss_pred CCEEEECC
Confidence 78888775
No 380
>PRK07890 short chain dehydrogenase; Provisional
Probab=95.56 E-value=0.019 Score=56.66 Aligned_cols=42 Identities=19% Similarity=0.165 Sum_probs=35.2
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR 189 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~ 189 (560)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+.
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~ 48 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAE 48 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH
Confidence 56778876 9999999999999999999999998776554433
No 381
>PRK07774 short chain dehydrogenase; Provisional
Probab=95.53 E-value=0.021 Score=55.97 Aligned_cols=40 Identities=25% Similarity=0.307 Sum_probs=34.4
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~ 187 (560)
++|.|.|+ |.+|..++..|++.|++|++.+++++..+...
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~ 47 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVA 47 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 56888887 99999999999999999999999987665443
No 382
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=95.53 E-value=0.06 Score=53.39 Aligned_cols=83 Identities=14% Similarity=0.221 Sum_probs=49.1
Q ss_pred eEEEEEcC---ccchHHHHHHHHhCCCcEEEEeCCHH--HHHHHHHHHHHHHH--HHHHcCCCCHHHHHhhhcccccccC
Q 008604 148 KKVAILGG---GLMGSGIATALILSNYPVILKEVNEK--FLEAGIGRVRANLQ--SRVKKGKMTQEKFEKTISLLTGVLD 220 (560)
Q Consensus 148 ~~V~VIG~---G~mG~~iA~~l~~~G~~V~l~d~~~~--~~~~~~~~i~~~~~--~~~~~g~~~~~~~~~~~~~i~~~~~ 220 (560)
+.+.|.|+ +.+|..+|..|++.|++|++.+++.+ +.+...+.+..... ..+..+.-+++++++..+.+.
T Consensus 7 k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~---- 82 (258)
T PRK07370 7 KKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEETFETIK---- 82 (258)
T ss_pred cEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHHHHHHHH----
Confidence 45677787 48999999999999999998876543 22222222222111 112334444555555444332
Q ss_pred cccccCCCEEEEecc
Q 008604 221 YESFKDVDMVIEAII 235 (560)
Q Consensus 221 ~~~~~~aDlVIeav~ 235 (560)
+.+...|++|.+.-
T Consensus 83 -~~~g~iD~lv~nag 96 (258)
T PRK07370 83 -QKWGKLDILVHCLA 96 (258)
T ss_pred -HHcCCCCEEEEccc
Confidence 33457888888763
No 383
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.53 E-value=0.017 Score=57.04 Aligned_cols=33 Identities=27% Similarity=0.327 Sum_probs=28.8
Q ss_pred eEEEEEcCc---cchHHHHHHHHhCCCcEEEEeCCH
Q 008604 148 KKVAILGGG---LMGSGIATALILSNYPVILKEVNE 180 (560)
Q Consensus 148 ~~V~VIG~G---~mG~~iA~~l~~~G~~V~l~d~~~ 180 (560)
+.+.|.|++ .+|.++|..|++.|++|++.+++.
T Consensus 8 k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~ 43 (252)
T PRK06079 8 KKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND 43 (252)
T ss_pred CEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch
Confidence 456677875 799999999999999999999984
No 384
>PRK07454 short chain dehydrogenase; Provisional
Probab=95.52 E-value=0.022 Score=55.58 Aligned_cols=40 Identities=23% Similarity=0.274 Sum_probs=34.8
Q ss_pred ceEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 008604 147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (560)
Q Consensus 147 ~~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~ 186 (560)
+++|.|.|+ |.+|..++..|++.|++|++.+++++..+..
T Consensus 6 ~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~ 46 (241)
T PRK07454 6 MPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEAL 46 (241)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 567888876 9999999999999999999999998766543
No 385
>PRK07832 short chain dehydrogenase; Provisional
Probab=95.52 E-value=0.031 Score=55.88 Aligned_cols=39 Identities=15% Similarity=0.219 Sum_probs=33.6
Q ss_pred EEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008604 149 KVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (560)
Q Consensus 149 ~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~ 187 (560)
+|.|+|+ |.+|..++..|++.|++|++++++++.++...
T Consensus 2 ~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~ 41 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTV 41 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 5778876 99999999999999999999999987765543
No 386
>PRK08267 short chain dehydrogenase; Provisional
Probab=95.48 E-value=0.018 Score=57.08 Aligned_cols=39 Identities=26% Similarity=0.238 Sum_probs=34.5
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~ 186 (560)
++|.|+|+ |.+|..++..|++.|++|++.+++.+.++..
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~ 41 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAAL 41 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence 57888876 9999999999999999999999998876654
No 387
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.47 E-value=0.14 Score=55.36 Aligned_cols=39 Identities=28% Similarity=0.344 Sum_probs=35.6
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~ 186 (560)
++|.|+|+|.+|..++..|...|++|+++|++++.++..
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~ 39 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRL 39 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHH
Confidence 479999999999999999999999999999999887654
No 388
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.47 E-value=0.11 Score=51.93 Aligned_cols=82 Identities=18% Similarity=0.236 Sum_probs=54.4
Q ss_pred eEEEEE-cC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHH----HHcCCCCHHHHHhhhcccccccCc
Q 008604 148 KKVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSR----VKKGKMTQEKFEKTISLLTGVLDY 221 (560)
Q Consensus 148 ~~V~VI-G~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~----~~~g~~~~~~~~~~~~~i~~~~~~ 221 (560)
.||++| |+ ..+|..+|..++++|..++++.+..+++++..+.+++..... +..+..+.+++.+.++.+.
T Consensus 12 ~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~----- 86 (282)
T KOG1205|consen 12 GKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAI----- 86 (282)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHH-----
Confidence 356655 88 789999999999999999999999988887655554443222 1122333444443332221
Q ss_pred ccccCCCEEEEec
Q 008604 222 ESFKDVDMVIEAI 234 (560)
Q Consensus 222 ~~~~~aDlVIeav 234 (560)
..+++.|++|++.
T Consensus 87 ~~fg~vDvLVNNA 99 (282)
T KOG1205|consen 87 RHFGRVDVLVNNA 99 (282)
T ss_pred HhcCCCCEEEecC
Confidence 3578889999875
No 389
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=95.44 E-value=0.03 Score=55.75 Aligned_cols=93 Identities=22% Similarity=0.289 Sum_probs=64.3
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc--c--cCc-
Q 008604 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG--V--LDY- 221 (560)
Q Consensus 147 ~~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~--~--~~~- 221 (560)
-.+|+|||.|..|..-|....--|.+|++.|+|.+++...-. .. . .|+.. + .++
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd--------~f-~------------~rv~~~~st~~~ie 226 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDD--------LF-G------------GRVHTLYSTPSNIE 226 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhH--------hh-C------------ceeEEEEcCHHHHH
Confidence 368999999999999999999999999999999998764321 11 1 12211 1 122
Q ss_pred ccccCCCEEEEecc-CChHHHHHHHHHHHhhcCCCceeec
Q 008604 222 ESFKDVDMVIEAII-ENVSLKQQIFADLEKYCPPHCILAS 260 (560)
Q Consensus 222 ~~~~~aDlVIeav~-e~~~~k~~~~~~l~~~~~~~~ii~s 260 (560)
+.+..+|+||-+|- .....-+-+.+++.+.++++++|++
T Consensus 227 e~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 227 EAVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred HHhhhccEEEEEEEecCCCCceehhHHHHHhcCCCcEEEE
Confidence 46889999999981 1111123455667778889998864
No 390
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.44 E-value=0.028 Score=55.07 Aligned_cols=40 Identities=25% Similarity=0.317 Sum_probs=35.1
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~ 187 (560)
++|.|+|+ |.+|..++..|++.|++|++.+++++..+...
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~ 46 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVA 46 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 57889987 99999999999999999999999987765543
No 391
>PRK06057 short chain dehydrogenase; Provisional
Probab=95.44 E-value=0.023 Score=56.15 Aligned_cols=39 Identities=21% Similarity=0.304 Sum_probs=34.4
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~ 186 (560)
++|.|+|+ |.+|..++..+++.|++|++.++++..++..
T Consensus 8 ~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~ 47 (255)
T PRK06057 8 RVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAA 47 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 67889988 9999999999999999999999998765543
No 392
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=95.42 E-value=0.062 Score=54.73 Aligned_cols=73 Identities=16% Similarity=0.183 Sum_probs=51.3
Q ss_pred ceEEEEEcCccchHHHHHHHHhC-C-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 008604 147 VKKVAILGGGLMGSGIATALILS-N-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES 223 (560)
Q Consensus 147 ~~~V~VIG~G~mG~~iA~~l~~~-G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 223 (560)
.++++|||+|.+|...+..++.- . -+|.+||++++++++..+++...+ |. .+....+. ++
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~------~~-----------~v~~~~~~~ea 179 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEF------GV-----------DIRPVDNAEAA 179 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhc------CC-----------cEEEeCCHHHH
Confidence 47899999999999888877653 4 479999999999876654432211 10 12333444 56
Q ss_pred ccCCCEEEEeccC
Q 008604 224 FKDVDMVIEAIIE 236 (560)
Q Consensus 224 ~~~aDlVIeav~e 236 (560)
+.+||+|+.+.+.
T Consensus 180 v~~aDIV~taT~s 192 (301)
T PRK06407 180 LRDADTITSITNS 192 (301)
T ss_pred HhcCCEEEEecCC
Confidence 8899999988763
No 393
>PRK07063 short chain dehydrogenase; Provisional
Probab=95.42 E-value=0.022 Score=56.46 Aligned_cols=43 Identities=21% Similarity=0.311 Sum_probs=35.9
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV 190 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i 190 (560)
++|.|.|+ |.+|..++..|++.|++|++.+++++.++...+.+
T Consensus 8 k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~ 51 (260)
T PRK07063 8 KVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAI 51 (260)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 46777776 89999999999999999999999988776655444
No 394
>PRK06046 alanine dehydrogenase; Validated
Probab=95.41 E-value=0.054 Score=55.90 Aligned_cols=43 Identities=23% Similarity=0.176 Sum_probs=35.1
Q ss_pred ceEEEEEcCccchHHHHHHHHhC-CC-cEEEEeCCHHHHHHHHHH
Q 008604 147 VKKVAILGGGLMGSGIATALILS-NY-PVILKEVNEKFLEAGIGR 189 (560)
Q Consensus 147 ~~~V~VIG~G~mG~~iA~~l~~~-G~-~V~l~d~~~~~~~~~~~~ 189 (560)
.++|+|||+|.+|...+..++.. +. .|.+||+++++.++..++
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~ 173 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVER 173 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHH
Confidence 46899999999999999888743 44 688999999888766544
No 395
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.40 E-value=0.053 Score=60.34 Aligned_cols=96 Identities=18% Similarity=0.252 Sum_probs=60.6
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV 227 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 227 (560)
.+|.|+|+|.+|..+|..|.+.|++|+++|.|+++.+++.+. ...+-.|..+..+ .+ ....+.+|
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~-----g~~~i~GD~~~~~---~L-------~~a~i~~a 482 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER-----GIRAVLGNAANEE---IM-------QLAHLDCA 482 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC-----CCeEEEcCCCCHH---HH-------HhcCcccc
Confidence 689999999999999999999999999999999987765321 0000001111000 00 00236799
Q ss_pred CEEEEeccCChHHHHHHHHHHHhhcCCCceee
Q 008604 228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILA 259 (560)
Q Consensus 228 DlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~ 259 (560)
|.||-++++|.+... +...+.+..+.-.|++
T Consensus 483 ~~viv~~~~~~~~~~-iv~~~~~~~~~~~iia 513 (558)
T PRK10669 483 RWLLLTIPNGYEAGE-IVASAREKRPDIEIIA 513 (558)
T ss_pred CEEEEEcCChHHHHH-HHHHHHHHCCCCeEEE
Confidence 999999988765433 2233444444334554
No 396
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=95.39 E-value=0.32 Score=46.67 Aligned_cols=130 Identities=25% Similarity=0.271 Sum_probs=80.1
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCH-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE-KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~-~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (560)
++|.|||+|..|..=+..|++.|.+|+++..+. +.+.. .++.+.+.. +.-.-+.+.+.+
T Consensus 13 k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~-----------~~~~~~i~~---------~~~~~~~~~~~~ 72 (210)
T COG1648 13 KKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKA-----------LIEEGKIKW---------IEREFDAEDLDD 72 (210)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHH-----------HHHhcCcch---------hhcccChhhhcC
Confidence 589999999999999999999999999998776 22222 223333211 111122355677
Q ss_pred CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccHHHHHhhccCCCcEeecccCCCC--CCCCeEEEEeCCCCc
Q 008604 227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPA--HVMPLLEIVRTNQTS 304 (560)
Q Consensus 227 aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~~la~~~~~~~r~~g~hf~~P~--~~~~lvEiv~g~~t~ 304 (560)
+++||-|+. |.++.+.+++...+. .+++ |.. ..|+. ++|+.|. ...++.--|.....+
T Consensus 73 ~~lviaAt~-d~~ln~~i~~~a~~~----~i~v-Nv~-----------D~p~~---~~f~~Pa~~~r~~l~iaIsT~G~s 132 (210)
T COG1648 73 AFLVIAATD-DEELNERIAKAARER----RILV-NVV-----------DDPEL---CDFIFPAIVDRGPLQIAISTGGKS 132 (210)
T ss_pred ceEEEEeCC-CHHHHHHHHHHHHHh----CCce-ecc-----------CCccc---CceecceeeccCCeEEEEECCCCC
Confidence 999998875 667777777655543 2332 321 22322 4555564 345666666666666
Q ss_pred HHHHHHHHHHHHh
Q 008604 305 PQVIVDLLDIGKK 317 (560)
Q Consensus 305 ~e~~~~~~~l~~~ 317 (560)
|.....++.-...
T Consensus 133 P~la~~ir~~Ie~ 145 (210)
T COG1648 133 PVLARLLREKIEA 145 (210)
T ss_pred hHHHHHHHHHHHH
Confidence 6665555554433
No 397
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=95.39 E-value=0.031 Score=54.87 Aligned_cols=98 Identities=14% Similarity=0.141 Sum_probs=56.5
Q ss_pred eEEEEEcCccchHHHHHHHHhCC-----------CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccc-
Q 008604 148 KKVAILGGGLMGSGIATALILSN-----------YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLL- 215 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G-----------~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i- 215 (560)
.+|.|||+|..|+.++..|++.| .+++++|.|.=..... .+++-...+-|....+...+.+..+
T Consensus 12 ~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNL----nRQlf~~~dVG~~Ka~v~~~ri~~~~ 87 (244)
T TIGR03736 12 VSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANV----GRQAFYPADVGQNKAIVLVNRLNQAM 87 (244)
T ss_pred CeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchh----hcccCChhHCCcHHHHHHHHHHHhcc
Confidence 58999999999999999999864 3899999763211110 0000001122322222222222222
Q ss_pred --ccc--c-C---cccccCCCEEEEeccCChHHHHHHHHHHHh
Q 008604 216 --TGV--L-D---YESFKDVDMVIEAIIENVSLKQQIFADLEK 250 (560)
Q Consensus 216 --~~~--~-~---~~~~~~aDlVIeav~e~~~~k~~~~~~l~~ 250 (560)
... . . .+.+.++|+||.|+ ++.+.+..+.+.+.+
T Consensus 88 ~~~i~a~~~~~~~~~~~~~~DiVi~av-Dn~~aR~~l~~~~~~ 129 (244)
T TIGR03736 88 GTDWTAHPERVERSSTLHRPDIVIGCV-DNRAARLAILRAFEG 129 (244)
T ss_pred CceEEEEEeeeCchhhhcCCCEEEECC-CCHHHHHHHHHHHHH
Confidence 111 0 0 11256799999998 577888888777655
No 398
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.37 E-value=0.14 Score=46.80 Aligned_cols=32 Identities=28% Similarity=0.292 Sum_probs=29.5
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCC
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVN 179 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~ 179 (560)
++|.|||+|.+|...+..|...|++|++++.+
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence 68999999999999999999999999999643
No 399
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.37 E-value=0.12 Score=55.22 Aligned_cols=37 Identities=30% Similarity=0.351 Sum_probs=33.4
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHH
Q 008604 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFL 183 (560)
Q Consensus 147 ~~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~ 183 (560)
.++|.|||.|.+|.++|..|.+.|++|+++|.+++.+
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~ 39 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEAL 39 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcccc
Confidence 3689999999999999999999999999999887643
No 400
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.36 E-value=0.11 Score=50.20 Aligned_cols=127 Identities=20% Similarity=0.236 Sum_probs=73.4
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCC--HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVN--EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK 225 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~--~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 225 (560)
++|.|||+|.++..=+..|+..|.+|+++..+ ++ +.. ..+.|.++ .+.-.-..+++.
T Consensus 26 ~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~e-l~~-----------l~~~~~i~---------~~~r~~~~~dl~ 84 (223)
T PRK05562 26 IKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKE-FLD-----------LKKYGNLK---------LIKGNYDKEFIK 84 (223)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHH-HHH-----------HHhCCCEE---------EEeCCCChHHhC
Confidence 48999999999999999999999999999654 33 211 12223221 111011224588
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccHHHHHhhccCCCcEeecccCCCC--CCCCeEEEEeCCCC
Q 008604 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPA--HVMPLLEIVRTNQT 303 (560)
Q Consensus 226 ~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~~la~~~~~~~r~~g~hf~~P~--~~~~lvEiv~g~~t 303 (560)
++++||-|. +|.++-+.+.+. +....+++.+.. .|+. ..|+.|. ...+++--|.....
T Consensus 85 g~~LViaAT-dD~~vN~~I~~~----a~~~~~lvn~vd------------~p~~---~dFi~PAiv~rg~l~IaIST~G~ 144 (223)
T PRK05562 85 DKHLIVIAT-DDEKLNNKIRKH----CDRLYKLYIDCS------------DYKK---GLCIIPYQRSTKNFVFALNTKGG 144 (223)
T ss_pred CCcEEEECC-CCHHHHHHHHHH----HHHcCCeEEEcC------------Cccc---CeEEeeeEEecCCEEEEEECCCc
Confidence 999999886 566665555543 333233332221 1111 2355553 34566666666666
Q ss_pred cHHHHHHHHHHH
Q 008604 304 SPQVIVDLLDIG 315 (560)
Q Consensus 304 ~~e~~~~~~~l~ 315 (560)
+|.....++.-+
T Consensus 145 sP~lar~lR~~i 156 (223)
T PRK05562 145 SPKTSVFIGEKV 156 (223)
T ss_pred CcHHHHHHHHHH
Confidence 776655555443
No 401
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=95.36 E-value=0.031 Score=55.19 Aligned_cols=43 Identities=21% Similarity=0.268 Sum_probs=36.8
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV 190 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i 190 (560)
++|.|.|+ |.+|..++..|++.|++|++.+++++..++..+.+
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~ 51 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEI 51 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Confidence 57888877 99999999999999999999999998776655443
No 402
>PRK08643 acetoin reductase; Validated
Probab=95.36 E-value=0.025 Score=55.77 Aligned_cols=41 Identities=24% Similarity=0.332 Sum_probs=33.9
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~ 188 (560)
+++.|+|+ |.+|..++..|++.|++|++.+++.+.++....
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~ 44 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAAD 44 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 35666766 899999999999999999999999887665443
No 403
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=95.35 E-value=0.025 Score=55.80 Aligned_cols=41 Identities=22% Similarity=0.279 Sum_probs=35.3
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~ 188 (560)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 52 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAE 52 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 57888876 999999999999999999999999887665443
No 404
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=95.35 E-value=0.46 Score=48.07 Aligned_cols=97 Identities=19% Similarity=0.226 Sum_probs=56.9
Q ss_pred eEEEEEcCccchHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCC-HHHHHhhhcccccccCcccc
Q 008604 148 KKVAILGGGLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMT-QEKFEKTISLLTGVLDYESF 224 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~-~~~~~~~~~~i~~~~~~~~~ 224 (560)
-+|+|||+|.+|......+.+. +.++. ++|++++....... .+.|... ....+..++ ..++
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A---------~~~Gi~~~~~~ie~LL~-------~~~~ 68 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARA---------RRLGVATSAEGIDGLLA-------MPEF 68 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHH---------HHcCCCcccCCHHHHHh-------CcCC
Confidence 4899999999999977777654 67765 68898864321111 1223211 111222221 0124
Q ss_pred cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcc
Q 008604 225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI 265 (560)
Q Consensus 225 ~~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl 265 (560)
.+.|+|+++.+.... .+. .......++.+.++++..
T Consensus 69 ~dIDiVf~AT~a~~H--~e~---a~~a~eaGk~VID~sPA~ 104 (302)
T PRK08300 69 DDIDIVFDATSAGAH--VRH---AAKLREAGIRAIDLTPAA 104 (302)
T ss_pred CCCCEEEECCCHHHH--HHH---HHHHHHcCCeEEECCccc
Confidence 679999999985433 222 233345678888888754
No 405
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=95.34 E-value=0.031 Score=55.03 Aligned_cols=41 Identities=24% Similarity=0.301 Sum_probs=35.6
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~ 188 (560)
++|.|.|+ |.+|..++..|+..|++|++++++++..+....
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~ 46 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAE 46 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence 57888985 999999999999999999999999887765443
No 406
>PRK06139 short chain dehydrogenase; Provisional
Probab=95.34 E-value=0.026 Score=58.37 Aligned_cols=82 Identities=17% Similarity=0.152 Sum_probs=52.8
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHH--HHHcCCCCHHHHHhhhcccccccCcccc
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQS--RVKKGKMTQEKFEKTISLLTGVLDYESF 224 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~--~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 224 (560)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.+++..+.+...-.. .+..+..+.+++++..+.+. +..
T Consensus 8 k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~-----~~~ 82 (330)
T PRK06139 8 AVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAA-----SFG 82 (330)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHH-----Hhc
Confidence 56777777 89999999999999999999999998887665444321000 11222333444444333221 223
Q ss_pred cCCCEEEEec
Q 008604 225 KDVDMVIEAI 234 (560)
Q Consensus 225 ~~aDlVIeav 234 (560)
...|++|.+.
T Consensus 83 g~iD~lVnnA 92 (330)
T PRK06139 83 GRIDVWVNNV 92 (330)
T ss_pred CCCCEEEECC
Confidence 5678888876
No 407
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=95.33 E-value=0.017 Score=61.56 Aligned_cols=33 Identities=27% Similarity=0.484 Sum_probs=31.4
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCH
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~ 180 (560)
.+|+|||+|.+|.++|..|++.|++|+++|++.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 589999999999999999999999999999875
No 408
>PRK07478 short chain dehydrogenase; Provisional
Probab=95.32 E-value=0.029 Score=55.29 Aligned_cols=43 Identities=16% Similarity=0.199 Sum_probs=35.7
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV 190 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i 190 (560)
+++.|.|+ |.+|..+|..|++.|++|++.+++++.++...+.+
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~ 50 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEI 50 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 46777776 89999999999999999999999988776654443
No 409
>PRK05650 short chain dehydrogenase; Provisional
Probab=95.31 E-value=0.032 Score=55.63 Aligned_cols=40 Identities=28% Similarity=0.330 Sum_probs=34.7
Q ss_pred EEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 008604 149 KVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (560)
Q Consensus 149 ~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~ 188 (560)
+|.|+|+ |.+|..++..|++.|++|++.+++.+.++....
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~ 42 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLK 42 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 6788876 999999999999999999999999887765543
No 410
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=95.31 E-value=0.027 Score=55.38 Aligned_cols=39 Identities=21% Similarity=0.181 Sum_probs=33.8
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~ 186 (560)
++|.|+|+ |.+|..+|..|++.|++|++.+++++.++..
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~ 40 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQEL 40 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 36888886 9999999999999999999999998876543
No 411
>PRK07024 short chain dehydrogenase; Provisional
Probab=95.28 E-value=0.023 Score=56.23 Aligned_cols=39 Identities=23% Similarity=0.149 Sum_probs=33.6
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~ 186 (560)
++|.|.|+ |.+|..++..|++.|++|++.+++.+.+++.
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~ 42 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAF 42 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 46778875 9999999999999999999999998776543
No 412
>PRK05854 short chain dehydrogenase; Provisional
Probab=95.26 E-value=0.034 Score=56.97 Aligned_cols=82 Identities=20% Similarity=0.202 Sum_probs=51.8
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHH----HHHHcCCCCHHHHHhhhcccccccCcc
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQ----SRVKKGKMTQEKFEKTISLLTGVLDYE 222 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~----~~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (560)
+++.|.|+ +.+|..+|..|++.|++|++.+++.+..+++.+.+..... ..+..+..+.+++.+..+.+. +
T Consensus 15 k~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~-----~ 89 (313)
T PRK05854 15 KRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLR-----A 89 (313)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHH-----H
Confidence 45666665 8899999999999999999999999888776655533210 011223333444443333221 2
Q ss_pred cccCCCEEEEec
Q 008604 223 SFKDVDMVIEAI 234 (560)
Q Consensus 223 ~~~~aDlVIeav 234 (560)
.....|++|.+.
T Consensus 90 ~~~~iD~li~nA 101 (313)
T PRK05854 90 EGRPIHLLINNA 101 (313)
T ss_pred hCCCccEEEECC
Confidence 234578888765
No 413
>PRK05867 short chain dehydrogenase; Provisional
Probab=95.26 E-value=0.025 Score=55.80 Aligned_cols=42 Identities=21% Similarity=0.203 Sum_probs=35.2
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR 189 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~ 189 (560)
+++.|.|+ |.+|..+|..|++.|++|++.+++.+.++...+.
T Consensus 10 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~ 52 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADE 52 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH
Confidence 46777777 8999999999999999999999998877655443
No 414
>PRK08265 short chain dehydrogenase; Provisional
Probab=95.26 E-value=0.021 Score=56.67 Aligned_cols=81 Identities=17% Similarity=0.311 Sum_probs=49.9
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (560)
+++.|.|+ |.+|..+|..|++.|++|++.+++.+.+++..+.+... ...+..+..+.+++.+.+..+. +.+..
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~Dl~~~~~~~~~~~~~~-----~~~g~ 80 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASLGER-ARFIATDITDDAAIERAVATVV-----ARFGR 80 (261)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCe-eEEEEecCCCHHHHHHHHHHHH-----HHhCC
Confidence 56777776 99999999999999999999999987665543322100 0011223333444444333221 22456
Q ss_pred CCEEEEec
Q 008604 227 VDMVIEAI 234 (560)
Q Consensus 227 aDlVIeav 234 (560)
.|++|.+.
T Consensus 81 id~lv~~a 88 (261)
T PRK08265 81 VDILVNLA 88 (261)
T ss_pred CCEEEECC
Confidence 78888765
No 415
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.25 E-value=0.066 Score=45.23 Aligned_cols=73 Identities=26% Similarity=0.457 Sum_probs=50.1
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-cCc-cccc
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LDY-ESFK 225 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~~~~ 225 (560)
++|.|||+|.+|..=+..|++.|.+|+++..+.+..+ +.+ ... ..+ +.+.
T Consensus 8 ~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~----------------~~i------------~~~~~~~~~~l~ 59 (103)
T PF13241_consen 8 KRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSE----------------GLI------------QLIRREFEEDLD 59 (103)
T ss_dssp -EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHH----------------TSC------------EEEESS-GGGCT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhh----------------hHH------------HHHhhhHHHHHh
Confidence 6899999999999999999999999999998861111 111 111 112 5688
Q ss_pred CCCEEEEeccCChHHHHHHHHHHH
Q 008604 226 DVDMVIEAIIENVSLKQQIFADLE 249 (560)
Q Consensus 226 ~aDlVIeav~e~~~~k~~~~~~l~ 249 (560)
++|+||.+. ++.++.+.+.+...
T Consensus 60 ~~~lV~~at-~d~~~n~~i~~~a~ 82 (103)
T PF13241_consen 60 GADLVFAAT-DDPELNEAIYADAR 82 (103)
T ss_dssp TESEEEE-S-S-HHHHHHHHHHHH
T ss_pred hheEEEecC-CCHHHHHHHHHHHh
Confidence 899999655 56666666665543
No 416
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=95.24 E-value=0.057 Score=54.09 Aligned_cols=39 Identities=31% Similarity=0.238 Sum_probs=34.6
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHH
Q 008604 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAG 186 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~ 186 (560)
++|.|+|+|..+++++..|+..|. +|++++|++++.+..
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~l 162 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKAL 162 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence 479999999999999999999997 599999999877553
No 417
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.24 E-value=0.084 Score=56.97 Aligned_cols=41 Identities=37% Similarity=0.421 Sum_probs=37.2
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008604 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (560)
Q Consensus 147 ~~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~ 187 (560)
.++|.|+|+|.+|..++..|...|++|+++|.+++..+...
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~ 271 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELA 271 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHH
Confidence 57899999999999999999999999999999998876543
No 418
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=95.24 E-value=0.067 Score=58.67 Aligned_cols=41 Identities=17% Similarity=0.171 Sum_probs=35.2
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~ 188 (560)
+.|.|.|+ |.+|..++..|++.|++|++++++.+.++....
T Consensus 81 KvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~ 122 (576)
T PLN03209 81 DLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQ 122 (576)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence 46778877 999999999999999999999999987765443
No 419
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=95.24 E-value=0.061 Score=60.26 Aligned_cols=94 Identities=17% Similarity=0.162 Sum_probs=63.7
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-cC---c--
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LD---Y-- 221 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~---~-- 221 (560)
.+|.|+|.|.+|..++..|.+.|++|+++|.|+++.+.+.+ .|.. -+.+. ++ +
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~-----------~g~~----------v~~GDat~~~~L~~ 459 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK-----------YGYK----------VYYGDATQLELLRA 459 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh-----------CCCe----------EEEeeCCCHHHHHh
Confidence 58999999999999999999999999999999998876531 1210 01110 11 1
Q ss_pred ccccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCC
Q 008604 222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263 (560)
Q Consensus 222 ~~~~~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntS 263 (560)
..+.+||.||-++.++.. -..+...+.+..++-.|++-..+
T Consensus 460 agi~~A~~vv~~~~d~~~-n~~i~~~~r~~~p~~~IiaRa~~ 500 (601)
T PRK03659 460 AGAEKAEAIVITCNEPED-TMKIVELCQQHFPHLHILARARG 500 (601)
T ss_pred cCCccCCEEEEEeCCHHH-HHHHHHHHHHHCCCCeEEEEeCC
Confidence 246799999999987643 33344445555555566654333
No 420
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.23 E-value=0.91 Score=45.81 Aligned_cols=40 Identities=28% Similarity=0.255 Sum_probs=31.7
Q ss_pred ceEEEEEcCccchHHHHHHHHhC-CCcEEEEeCCHHHHHHHH
Q 008604 147 VKKVAILGGGLMGSGIATALILS-NYPVILKEVNEKFLEAGI 187 (560)
Q Consensus 147 ~~~V~VIG~G~mG~~iA~~l~~~-G~~V~l~d~~~~~~~~~~ 187 (560)
=++|+|+|+|.+| ++|..++++ |++|+++|.+..+-+++.
T Consensus 182 G~~vgI~GlGGLG-h~aVq~AKAMG~rV~vis~~~~kkeea~ 222 (360)
T KOG0023|consen 182 GKWVGIVGLGGLG-HMAVQYAKAMGMRVTVISTSSKKKEEAI 222 (360)
T ss_pred CcEEEEecCcccc-hHHHHHHHHhCcEEEEEeCCchhHHHHH
Confidence 3689999998877 677777776 999999999976555544
No 421
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=95.22 E-value=0.032 Score=56.38 Aligned_cols=34 Identities=18% Similarity=0.298 Sum_probs=31.0
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHH
Q 008604 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEK 181 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~ 181 (560)
++|.|||+|..+++|+..++..|. +|++++|+++
T Consensus 125 k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~ 159 (288)
T PRK12749 125 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE 159 (288)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc
Confidence 589999999999999999999986 7999999965
No 422
>PRK09242 tropinone reductase; Provisional
Probab=95.17 E-value=0.033 Score=55.04 Aligned_cols=42 Identities=17% Similarity=0.180 Sum_probs=35.2
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR 189 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~ 189 (560)
+++.|+|+ |.+|..++..|++.|++|++.+++.+.+++..+.
T Consensus 10 k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~ 52 (257)
T PRK09242 10 QTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDE 52 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH
Confidence 46778876 8999999999999999999999998876654433
No 423
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=95.17 E-value=0.024 Score=55.95 Aligned_cols=40 Identities=13% Similarity=0.233 Sum_probs=34.6
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~ 187 (560)
++|.|.|+ |.+|..+|..|++.|++|++.+++.+.++...
T Consensus 7 ~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~ 47 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAA 47 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH
Confidence 46778876 99999999999999999999999988766543
No 424
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.16 E-value=0.2 Score=54.77 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=32.0
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHH
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKF 182 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~ 182 (560)
++|.|+|+|..|.+.+..|...|++|+++|.+++.
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~ 47 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDA 47 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 68999999999999999999999999999987654
No 425
>PRK07877 hypothetical protein; Provisional
Probab=95.14 E-value=0.014 Score=65.83 Aligned_cols=94 Identities=15% Similarity=0.196 Sum_probs=56.6
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC--cEEEEeCCH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc----
Q 008604 148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNE---KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV---- 218 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~--~V~l~d~~~---~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~---- 218 (560)
.+|+|||+| +|+.+|..|+.+|. +++++|.+. ..+.+- +-..-.-|....+.....+..|.+.
T Consensus 108 ~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq-------~~~~~diG~~Kv~~a~~~l~~inp~i~v~ 179 (722)
T PRK07877 108 LRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRV-------PAGVFDLGVNKAVVAARRIAELDPYLPVE 179 (722)
T ss_pred CCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccc-------cCChhhcccHHHHHHHHHHHHHCCCCEEE
Confidence 589999999 89999999999995 899999763 223221 0011112222222222232222211
Q ss_pred --------cCcc-cccCCCEEEEeccCChHHHHHHHHHHHh
Q 008604 219 --------LDYE-SFKDVDMVIEAIIENVSLKQQIFADLEK 250 (560)
Q Consensus 219 --------~~~~-~~~~aDlVIeav~e~~~~k~~~~~~l~~ 250 (560)
.+.+ .+.++|+||+|+ ++.+.|..+.....+
T Consensus 180 ~~~~~i~~~n~~~~l~~~DlVvD~~-D~~~~R~~ln~~a~~ 219 (722)
T PRK07877 180 VFTDGLTEDNVDAFLDGLDVVVEEC-DSLDVKVLLREAARA 219 (722)
T ss_pred EEeccCCHHHHHHHhcCCCEEEECC-CCHHHHHHHHHHHHH
Confidence 1122 267899999998 478888777655443
No 426
>PRK07814 short chain dehydrogenase; Provisional
Probab=95.09 E-value=0.037 Score=54.99 Aligned_cols=41 Identities=20% Similarity=0.238 Sum_probs=34.8
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~ 188 (560)
++|.|.|+ |.+|..++..|++.|++|++.+++++.++...+
T Consensus 11 ~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~ 52 (263)
T PRK07814 11 QVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAE 52 (263)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 57888876 789999999999999999999999887665443
No 427
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=95.08 E-value=0.039 Score=55.25 Aligned_cols=41 Identities=29% Similarity=0.436 Sum_probs=34.2
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~ 188 (560)
+++.|.|+ |.+|..++..|++.|++|++++++.+.++...+
T Consensus 11 k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 52 (278)
T PRK08277 11 KVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVA 52 (278)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 46777776 999999999999999999999999876655433
No 428
>PRK12939 short chain dehydrogenase; Provisional
Probab=95.07 E-value=0.033 Score=54.48 Aligned_cols=41 Identities=17% Similarity=0.139 Sum_probs=35.3
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~ 188 (560)
++|.|+|+ |.+|..+|..|++.|++|++.+++++.++...+
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~ 49 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAA 49 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 57888886 999999999999999999999999887765443
No 429
>PRK07677 short chain dehydrogenase; Provisional
Probab=95.07 E-value=0.033 Score=54.87 Aligned_cols=41 Identities=27% Similarity=0.291 Sum_probs=34.1
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~ 188 (560)
+++.|.|+ |.+|..++..|++.|+.|++.+++.+.++...+
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~ 43 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKL 43 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 35777766 889999999999999999999999877665443
No 430
>PRK06197 short chain dehydrogenase; Provisional
Probab=95.07 E-value=0.041 Score=56.02 Aligned_cols=43 Identities=23% Similarity=0.210 Sum_probs=35.8
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV 190 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i 190 (560)
++|.|.|+ |.+|..+|..|++.|++|++.+++.+..+.+.+.+
T Consensus 17 k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l 60 (306)
T PRK06197 17 RVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARI 60 (306)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 46777776 99999999999999999999999988776555443
No 431
>PRK07109 short chain dehydrogenase; Provisional
Probab=95.05 E-value=0.036 Score=57.40 Aligned_cols=82 Identities=22% Similarity=0.180 Sum_probs=52.0
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHH--HHHHcCCCCHHHHHhhhcccccccCcccc
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQ--SRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~--~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 224 (560)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+.+...-. ..+..+..+.+++++..+.+. +.+
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~-----~~~ 83 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAE-----EEL 83 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHH-----HHC
Confidence 56777776 9999999999999999999999998877665544322100 011223333444444333221 234
Q ss_pred cCCCEEEEec
Q 008604 225 KDVDMVIEAI 234 (560)
Q Consensus 225 ~~aDlVIeav 234 (560)
...|++|.+.
T Consensus 84 g~iD~lInnA 93 (334)
T PRK07109 84 GPIDTWVNNA 93 (334)
T ss_pred CCCCEEEECC
Confidence 5678888776
No 432
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=95.05 E-value=0.043 Score=53.94 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=30.5
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHH
Q 008604 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEK 181 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~ 181 (560)
.+|.|+|+|.+|+.+|..|+..|. +++++|.+.-
T Consensus 25 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v 59 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV 59 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence 589999999999999999999996 7889998753
No 433
>PRK08251 short chain dehydrogenase; Provisional
Probab=95.05 E-value=0.041 Score=53.92 Aligned_cols=40 Identities=23% Similarity=0.260 Sum_probs=34.0
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~ 187 (560)
++|.|.|+ |.+|..++..|++.|++|++.+++++.++...
T Consensus 3 k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~ 43 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELK 43 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 46777775 99999999999999999999999988766543
No 434
>PRK06940 short chain dehydrogenase; Provisional
Probab=95.04 E-value=0.033 Score=55.85 Aligned_cols=79 Identities=22% Similarity=0.270 Sum_probs=48.6
Q ss_pred EEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHH--HHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 008604 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANL--QSRVKKGKMTQEKFEKTISLLTGVLDYESFKD 226 (560)
Q Consensus 149 ~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~--~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (560)
.+.|.|+|.+|..+|..|+ .|++|++.+++.+.++...+.+...- ...+..+..+.+++.+.++.+ +....
T Consensus 4 ~~lItGa~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~------~~~g~ 76 (275)
T PRK06940 4 VVVVIGAGGIGQAIARRVG-AGKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATA------QTLGP 76 (275)
T ss_pred EEEEECCChHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHH------HhcCC
Confidence 3445588999999999996 89999999999887765544432210 001222333444444443322 12356
Q ss_pred CCEEEEec
Q 008604 227 VDMVIEAI 234 (560)
Q Consensus 227 aDlVIeav 234 (560)
.|++|.+.
T Consensus 77 id~li~nA 84 (275)
T PRK06940 77 VTGLVHTA 84 (275)
T ss_pred CCEEEECC
Confidence 78888876
No 435
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.03 E-value=0.27 Score=53.56 Aligned_cols=38 Identities=29% Similarity=0.402 Sum_probs=33.7
Q ss_pred ccceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHH
Q 008604 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKF 182 (560)
Q Consensus 145 ~~~~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~ 182 (560)
...++|.|+|+|..|.++|..|++.|++|+++|++...
T Consensus 13 ~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~ 50 (473)
T PRK00141 13 ELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETA 50 (473)
T ss_pred ccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHH
Confidence 34578999999999999999999999999999987643
No 436
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=94.99 E-value=0.034 Score=54.40 Aligned_cols=40 Identities=20% Similarity=0.209 Sum_probs=34.2
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~ 187 (560)
++|.|.|+ |.+|..++..|+++|++|++.+++.+.+....
T Consensus 7 ~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~ 47 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATA 47 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 57888885 99999999999999999999999987665433
No 437
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=94.98 E-value=0.036 Score=54.95 Aligned_cols=39 Identities=18% Similarity=0.230 Sum_probs=33.4
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~ 186 (560)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++..
T Consensus 7 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 46 (263)
T PRK06200 7 QVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASL 46 (263)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 46777776 8899999999999999999999998776543
No 438
>PRK05876 short chain dehydrogenase; Provisional
Probab=94.97 E-value=0.045 Score=54.90 Aligned_cols=41 Identities=22% Similarity=0.335 Sum_probs=33.9
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~ 188 (560)
++|.|.|+ |.+|..+|..|++.|++|++.+++.+.+++..+
T Consensus 7 k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~ 48 (275)
T PRK05876 7 RGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVN 48 (275)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 45666665 899999999999999999999999887765443
No 439
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=94.96 E-value=0.044 Score=54.90 Aligned_cols=81 Identities=17% Similarity=0.206 Sum_probs=49.5
Q ss_pred eEEEEEcCc---cchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHH--HHHHcCCCCHHHHHhhhcccccccCcc
Q 008604 148 KKVAILGGG---LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQ--SRVKKGKMTQEKFEKTISLLTGVLDYE 222 (560)
Q Consensus 148 ~~V~VIG~G---~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~--~~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (560)
+.+.|.|++ .+|..+|..|++.|++|++.+++.+..+. .+.+...+. ..+..+..+.+++++.++.+. +
T Consensus 8 k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~-~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~~~~-----~ 81 (271)
T PRK06505 8 KRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKR-VKPLAESLGSDFVLPCDVEDIASVDAVFEALE-----K 81 (271)
T ss_pred CEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHH-HHHHHHhcCCceEEeCCCCCHHHHHHHHHHHH-----H
Confidence 356666886 79999999999999999999988643322 222211110 112334444555555544432 3
Q ss_pred cccCCCEEEEec
Q 008604 223 SFKDVDMVIEAI 234 (560)
Q Consensus 223 ~~~~aDlVIeav 234 (560)
.+...|++|.+.
T Consensus 82 ~~g~iD~lVnnA 93 (271)
T PRK06505 82 KWGKLDFVVHAI 93 (271)
T ss_pred HhCCCCEEEECC
Confidence 345678888876
No 440
>PRK06199 ornithine cyclodeaminase; Validated
Probab=94.95 E-value=0.065 Score=56.36 Aligned_cols=75 Identities=23% Similarity=0.220 Sum_probs=51.5
Q ss_pred cceEEEEEcCccchHHHHHHHHhC--C-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-
Q 008604 146 RVKKVAILGGGLMGSGIATALILS--N-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY- 221 (560)
Q Consensus 146 ~~~~V~VIG~G~mG~~iA~~l~~~--G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~- 221 (560)
+.++++|||+|.++......++.- . -+|.+|+++++++++..+++...+ . +. ..+....+.
T Consensus 154 da~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~----~-~~----------~~v~~~~s~~ 218 (379)
T PRK06199 154 DSKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETY----P-QI----------TNVEVVDSIE 218 (379)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhc----C-CC----------ceEEEeCCHH
Confidence 357899999999999999888762 2 489999999998876554432211 0 10 013334444
Q ss_pred ccccCCCEEEEecc
Q 008604 222 ESFKDVDMVIEAII 235 (560)
Q Consensus 222 ~~~~~aDlVIeav~ 235 (560)
+++.+||+|+.|.+
T Consensus 219 eav~~ADIVvtaT~ 232 (379)
T PRK06199 219 EVVRGSDIVTYCNS 232 (379)
T ss_pred HHHcCCCEEEEccC
Confidence 56889999998775
No 441
>PRK05872 short chain dehydrogenase; Provisional
Probab=94.94 E-value=0.037 Score=56.19 Aligned_cols=40 Identities=25% Similarity=0.248 Sum_probs=34.6
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~ 187 (560)
++|.|.|+ |.+|..+|..|++.|++|++.+++.+.++...
T Consensus 10 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~ 50 (296)
T PRK05872 10 KVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALA 50 (296)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 56778876 99999999999999999999999988776544
No 442
>PRK08862 short chain dehydrogenase; Provisional
Probab=94.93 E-value=0.044 Score=53.33 Aligned_cols=43 Identities=14% Similarity=0.207 Sum_probs=35.9
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV 190 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i 190 (560)
+++.|.|+ +.+|.++|..|++.|++|++.+++++.+++..+.+
T Consensus 6 k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i 49 (227)
T PRK08862 6 SIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQC 49 (227)
T ss_pred eEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHH
Confidence 46777776 66999999999999999999999998887665544
No 443
>PRK07074 short chain dehydrogenase; Provisional
Probab=94.92 E-value=0.032 Score=55.10 Aligned_cols=40 Identities=18% Similarity=0.310 Sum_probs=34.4
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~ 187 (560)
++|.|+|+ |.+|..++..|++.|++|++.+++++.++...
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~ 43 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFA 43 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 46888877 89999999999999999999999988765543
No 444
>PRK07576 short chain dehydrogenase; Provisional
Probab=94.90 E-value=0.059 Score=53.59 Aligned_cols=40 Identities=25% Similarity=0.405 Sum_probs=34.5
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~ 187 (560)
++|.|.|+ |.+|..++..|+..|++|++.+++++.++...
T Consensus 10 k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 50 (264)
T PRK07576 10 KNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAV 50 (264)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 57888877 89999999999999999999999987765443
No 445
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=94.89 E-value=0.045 Score=53.95 Aligned_cols=42 Identities=21% Similarity=0.315 Sum_probs=35.2
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR 189 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~ 189 (560)
+++.|.|+ |.+|..+|..|++.|++|++.+++++.++...+.
T Consensus 10 k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~ 52 (254)
T PRK08085 10 KNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAK 52 (254)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHH
Confidence 46777776 8999999999999999999999998877655443
No 446
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=94.86 E-value=0.064 Score=52.34 Aligned_cols=33 Identities=33% Similarity=0.342 Sum_probs=30.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCH
Q 008604 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~-~V~l~d~~~ 180 (560)
.+|.|||+|.+|+.++..|++.|. +++++|.+.
T Consensus 12 ~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 12 AHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 589999999999999999999997 899999763
No 447
>CHL00194 ycf39 Ycf39; Provisional
Probab=94.86 E-value=0.078 Score=54.35 Aligned_cols=36 Identities=19% Similarity=0.261 Sum_probs=32.2
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHH
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFL 183 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~ 183 (560)
++|.|+|+ |.+|+.++..|+++|++|++.+|+.+..
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~ 37 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKA 37 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHh
Confidence 37999986 9999999999999999999999997643
No 448
>PRK07589 ornithine cyclodeaminase; Validated
Probab=94.86 E-value=0.12 Score=53.52 Aligned_cols=72 Identities=13% Similarity=0.145 Sum_probs=50.0
Q ss_pred cceEEEEEcCccchHHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-c
Q 008604 146 RVKKVAILGGGLMGSGIATALIL--SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E 222 (560)
Q Consensus 146 ~~~~V~VIG~G~mG~~iA~~l~~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 222 (560)
+.++++|||+|..+...+..+.. .=-+|++|++++++.+...+++++ .+. .+...++. +
T Consensus 128 da~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~-------~~~-----------~v~~~~~~~~ 189 (346)
T PRK07589 128 DSRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAG-------PGL-----------RIVACRSVAE 189 (346)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHh-------cCC-----------cEEEeCCHHH
Confidence 35789999999999888765543 345899999999988765544321 110 12333444 5
Q ss_pred cccCCCEEEEecc
Q 008604 223 SFKDVDMVIEAII 235 (560)
Q Consensus 223 ~~~~aDlVIeav~ 235 (560)
++.+||+|+.|.+
T Consensus 190 av~~ADIIvtaT~ 202 (346)
T PRK07589 190 AVEGADIITTVTA 202 (346)
T ss_pred HHhcCCEEEEecC
Confidence 6889999998885
No 449
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=94.85 E-value=0.1 Score=58.67 Aligned_cols=91 Identities=19% Similarity=0.206 Sum_probs=61.3
Q ss_pred ceEEEEEcCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-cC---c-
Q 008604 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LD---Y- 221 (560)
Q Consensus 147 ~~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~---~- 221 (560)
-++|.|+|.|.+|..+++.|.+.|++|+++|.|+++.+.+.+ .|. .-+... ++ +
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~-----------~g~----------~v~~GDat~~~~L~ 458 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK-----------FGM----------KVFYGDATRMDLLE 458 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh-----------cCC----------eEEEEeCCCHHHHH
Confidence 368999999999999999999999999999999998876532 121 001110 11 1
Q ss_pred -ccccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceee
Q 008604 222 -ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILA 259 (560)
Q Consensus 222 -~~~~~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~ 259 (560)
..+.++|+||.++.++. .-..+...+.++.+.-.|++
T Consensus 459 ~agi~~A~~vvv~~~d~~-~n~~i~~~ar~~~p~~~iia 496 (621)
T PRK03562 459 SAGAAKAEVLINAIDDPQ-TSLQLVELVKEHFPHLQIIA 496 (621)
T ss_pred hcCCCcCCEEEEEeCCHH-HHHHHHHHHHHhCCCCeEEE
Confidence 24678999999986543 33334444555544445554
No 450
>PRK06172 short chain dehydrogenase; Provisional
Probab=94.83 E-value=0.047 Score=53.69 Aligned_cols=41 Identities=20% Similarity=0.225 Sum_probs=35.4
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~ 188 (560)
++|.|+|+ |.+|..+|..|++.|++|++.+++++.++...+
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~ 49 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVA 49 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 57888877 899999999999999999999999887665443
No 451
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=94.83 E-value=0.12 Score=51.18 Aligned_cols=82 Identities=17% Similarity=0.221 Sum_probs=49.9
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEe-CCHHHHHHHHHHHHHHHH---HHHHcCCCCHHHHHhhhcccccccCcc
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKE-VNEKFLEAGIGRVRANLQ---SRVKKGKMTQEKFEKTISLLTGVLDYE 222 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d-~~~~~~~~~~~~i~~~~~---~~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (560)
++|.|.|+ +.+|..+|..|++.|++|++.. ++.+.++...+.+..... ..+..+..+++++++.++.+. +
T Consensus 9 k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~-----~ 83 (260)
T PRK08416 9 KTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKID-----E 83 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH-----H
Confidence 46777776 8999999999999999999875 466665544433322110 011223334445544443332 2
Q ss_pred cccCCCEEEEec
Q 008604 223 SFKDVDMVIEAI 234 (560)
Q Consensus 223 ~~~~aDlVIeav 234 (560)
.+...|++|.+.
T Consensus 84 ~~g~id~lv~nA 95 (260)
T PRK08416 84 DFDRVDFFISNA 95 (260)
T ss_pred hcCCccEEEECc
Confidence 345688888876
No 452
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=94.82 E-value=0.056 Score=56.68 Aligned_cols=32 Identities=19% Similarity=0.368 Sum_probs=30.0
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCC
Q 008604 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN 179 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~-~V~l~d~~ 179 (560)
.+|.|||+|.+|+.++..|+..|. +++++|.+
T Consensus 42 ~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 42 ARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 589999999999999999999997 89999987
No 453
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.80 E-value=0.035 Score=55.59 Aligned_cols=68 Identities=15% Similarity=0.300 Sum_probs=51.1
Q ss_pred eEEEEEcCccc-hHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 008604 148 KKVAILGGGLM-GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK 225 (560)
Q Consensus 148 ~~V~VIG~G~m-G~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 225 (560)
++|+|||.|.. |.++|..|.+.|..|++..... .++ +.++
T Consensus 159 k~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t--------------------------------------~~l~~~~~ 200 (285)
T PRK14189 159 AHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKT--------------------------------------RDLAAHTR 200 (285)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEecCCC--------------------------------------CCHHHHhh
Confidence 68999999777 9999999999999999865321 122 3467
Q ss_pred CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeec
Q 008604 226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260 (560)
Q Consensus 226 ~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~s 260 (560)
+||+||.+++-. .++.. .+++++++++.
T Consensus 201 ~ADIVV~avG~~-----~~i~~--~~ik~gavVID 228 (285)
T PRK14189 201 QADIVVAAVGKR-----NVLTA--DMVKPGATVID 228 (285)
T ss_pred hCCEEEEcCCCc-----CccCH--HHcCCCCEEEE
Confidence 899999999732 23332 56888998764
No 454
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=94.79 E-value=0.058 Score=53.25 Aligned_cols=32 Identities=19% Similarity=0.344 Sum_probs=29.6
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCC
Q 008604 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN 179 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~-~V~l~d~~ 179 (560)
.+|.|||+|.+|+.++..|+..|. +++++|.+
T Consensus 33 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 33 ARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 589999999999999999999997 79999876
No 455
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=94.79 E-value=0.051 Score=53.64 Aligned_cols=41 Identities=17% Similarity=0.315 Sum_probs=34.2
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~ 188 (560)
++|.|.|+ |.+|..+|..|++.|++|+++|++.+.++....
T Consensus 3 k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~ 44 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQ 44 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 35777776 899999999999999999999999877655443
No 456
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=94.77 E-value=0.062 Score=53.54 Aligned_cols=81 Identities=16% Similarity=0.212 Sum_probs=49.6
Q ss_pred eEEEEEcCc---cchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHH--HHHHcCCCCHHHHHhhhcccccccCcc
Q 008604 148 KKVAILGGG---LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQ--SRVKKGKMTQEKFEKTISLLTGVLDYE 222 (560)
Q Consensus 148 ~~V~VIG~G---~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~--~~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (560)
+.+.|.|++ .+|.++|..|++.|+.|++.+++. .++...+.+..... ..+..+..+++++++..+.+. +
T Consensus 7 k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~-~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~-----~ 80 (262)
T PRK07984 7 KRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND-KLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELG-----K 80 (262)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecch-hHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHH-----h
Confidence 456677886 699999999999999999999873 33333333322110 122334445555555544332 2
Q ss_pred cccCCCEEEEec
Q 008604 223 SFKDVDMVIEAI 234 (560)
Q Consensus 223 ~~~~aDlVIeav 234 (560)
.+...|++|.+.
T Consensus 81 ~~g~iD~linnA 92 (262)
T PRK07984 81 VWPKFDGFVHSI 92 (262)
T ss_pred hcCCCCEEEECC
Confidence 345678888876
No 457
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.77 E-value=0.1 Score=50.73 Aligned_cols=39 Identities=31% Similarity=0.294 Sum_probs=34.5
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~ 186 (560)
++|.|.|+ |.+|..+++.+++.|++|++.+++++.++..
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~ 45 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRM 45 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 57888977 8899999999999999999999998876654
No 458
>PRK06138 short chain dehydrogenase; Provisional
Probab=94.75 E-value=0.037 Score=54.29 Aligned_cols=40 Identities=13% Similarity=0.162 Sum_probs=34.2
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~ 187 (560)
++|.|+|+ |.+|..++..|++.|++|++.+++.+..+...
T Consensus 6 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 46 (252)
T PRK06138 6 RVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVA 46 (252)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHH
Confidence 57888877 99999999999999999999999987665433
No 459
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=94.73 E-value=0.13 Score=51.66 Aligned_cols=173 Identities=18% Similarity=0.209 Sum_probs=88.1
Q ss_pred eEEEEE--cCccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHH-----HHHcCCCCHHHHHhhhcccccccC
Q 008604 148 KKVAIL--GGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQS-----RVKKGKMTQEKFEKTISLLTGVLD 220 (560)
Q Consensus 148 ~~V~VI--G~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~-----~~~~g~~~~~~~~~~~~~i~~~~~ 220 (560)
.+|++| |.-.+|.+||..|++.|.+|++.+++.+.++.....+...... .+..+.-+++++.+.....
T Consensus 8 gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~----- 82 (270)
T KOG0725|consen 8 GKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFA----- 82 (270)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHH-----
Confidence 467777 5578999999999999999999999999887766543321100 0111111223332222111
Q ss_pred ccc-ccCCCEEEEeccCC------hHHHHHHHHHHHhhcCCCceeeccCC--cccHHHHHh-hcc--CCCcEeecccCCC
Q 008604 221 YES-FKDVDMVIEAIIEN------VSLKQQIFADLEKYCPPHCILASNTS--TIDLNLIGE-RTY--SKDRIVGAHFFSP 288 (560)
Q Consensus 221 ~~~-~~~aDlVIeav~e~------~~~k~~~~~~l~~~~~~~~ii~sntS--sl~i~~la~-~~~--~~~r~~g~hf~~P 288 (560)
.+. ...-|++|.+..-. .+.-.+.|..+. .+|.- .+-+...+. .+. ....++-+-....
T Consensus 83 ~~~~~GkidiLvnnag~~~~~~~~~~~s~e~~d~~~---------~~Nl~G~~~~~~~~a~~~~~~~~gg~I~~~ss~~~ 153 (270)
T KOG0725|consen 83 VEKFFGKIDILVNNAGALGLTGSILDLSEEVFDKIM---------ATNLRGSAFCLKQAARPMLKKSKGGSIVNISSVAG 153 (270)
T ss_pred HHHhCCCCCEEEEcCCcCCCCCChhhCCHHHHHHHH---------hhhchhHHHHHHHHHHHHHHhcCCceEEEEecccc
Confidence 122 45677777765211 222222222222 22222 111221111 111 1111111110000
Q ss_pred CCCCCeEEE-EeCCCCcHHHHHHHHHHHHhcCCceEEecC-ccccchhch
Q 008604 289 AHVMPLLEI-VRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGFAVNRM 336 (560)
Q Consensus 289 ~~~~~lvEi-v~g~~t~~e~~~~~~~l~~~lGk~~i~v~d-~~G~i~nri 336 (560)
.. +..-. .....++....+..+.++..+++.-++|+. .||.+...+
T Consensus 154 ~~--~~~~~~~~Y~~sK~al~~ltr~lA~El~~~gIRvN~v~PG~i~T~~ 201 (270)
T KOG0725|consen 154 VG--PGPGSGVAYGVSKAALLQLTRSLAKELAKHGIRVNSVSPGLVKTSL 201 (270)
T ss_pred cc--CCCCCcccchhHHHHHHHHHHHHHHHHhhcCcEEEEeecCcEeCCc
Confidence 00 00000 112334667788888899999999999986 799988876
No 460
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.73 E-value=0.44 Score=47.81 Aligned_cols=167 Identities=19% Similarity=0.208 Sum_probs=89.5
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC---CCHHHHHh-hhcccccccCcc
Q 008604 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGK---MTQEKFEK-TISLLTGVLDYE 222 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~---~~~~~~~~-~~~~i~~~~~~~ 222 (560)
++|+|.|+|.+|.+.++....+|. +++.+|+|+++.+.+.+ .|. +.+.+... ..+.|.--+
T Consensus 194 stvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~-----------fGaTe~iNp~d~~~~i~evi~EmT--- 259 (375)
T KOG0022|consen 194 STVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKE-----------FGATEFINPKDLKKPIQEVIIEMT--- 259 (375)
T ss_pred CEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHh-----------cCcceecChhhccccHHHHHHHHh---
Confidence 689999999999999999999986 79999999999887652 222 12221111 111111011
Q ss_pred cccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCc--ccHHHHHhhccCCCcEeecccCCCCCCCCeEEEEeC
Q 008604 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300 (560)
Q Consensus 223 ~~~~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSs--l~i~~la~~~~~~~r~~g~hf~~P~~~~~lvEiv~g 300 (560)
+ .++|+-+||+- +.++-++.+....+-.....+|-...++ +++..+. .+ +.....|. +..|
T Consensus 260 d-gGvDysfEc~G-~~~~m~~al~s~h~GwG~sv~iGv~~~~~~i~~~p~~-l~-~GR~~~Gs-------------~FGG 322 (375)
T KOG0022|consen 260 D-GGVDYSFECIG-NVSTMRAALESCHKGWGKSVVIGVAAAGQEISTRPFQ-LV-TGRTWKGS-------------AFGG 322 (375)
T ss_pred c-CCceEEEEecC-CHHHHHHHHHHhhcCCCeEEEEEecCCCcccccchhh-hc-cccEEEEE-------------eccc
Confidence 1 67999999995 4555444444433332223333322222 2221111 00 00011121 1122
Q ss_pred CCCcHHHHHHHHHHHHhcCCceEEecCccccchhchHHHHHHHHHHHHHcCC
Q 008604 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT 352 (560)
Q Consensus 301 ~~t~~e~~~~~~~l~~~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~ 352 (560)
-+...+.=..+..+++. -+ +-.-||.+++-+--+|+|+.++.+|-
T Consensus 323 ~K~~~~iP~lV~~y~~~----~l---~ld~~ITh~l~f~~In~AF~ll~~Gk 367 (375)
T KOG0022|consen 323 FKSKSDIPKLVKDYMKK----KL---NLDEFITHELPFEEINKAFDLLHEGK 367 (375)
T ss_pred ccchhhhhHHHHHHHhC----cc---chhhhhhcccCHHHHHHHHHHHhCCc
Confidence 23333333333333322 01 12357788887888999999998884
No 461
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.72 E-value=0.061 Score=52.65 Aligned_cols=40 Identities=28% Similarity=0.408 Sum_probs=34.8
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~ 187 (560)
+++.|+|+ |.+|..++..+++.|+.|++.+++++.++...
T Consensus 6 ~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~ 46 (253)
T PRK08217 6 KVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAV 46 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 46888887 99999999999999999999999987765543
No 462
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.72 E-value=0.063 Score=52.30 Aligned_cols=40 Identities=30% Similarity=0.237 Sum_probs=34.1
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~ 187 (560)
++|.|.|+ |.+|..++..|+..|++|++.+++++.++...
T Consensus 8 ~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~ 48 (239)
T PRK07666 8 KNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVA 48 (239)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 56888876 89999999999999999999999987765443
No 463
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=94.71 E-value=0.16 Score=43.91 Aligned_cols=80 Identities=14% Similarity=0.163 Sum_probs=52.1
Q ss_pred eEEEEEc----CccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 008604 148 KKVAILG----GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES 223 (560)
Q Consensus 148 ~~V~VIG----~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 223 (560)
++|+||| .+..|.-+...+.++|++|+.++.....+. -+....++++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~-----------------------------G~~~y~sl~e 51 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEIL-----------------------------GIKCYPSLAE 51 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEET-----------------------------TEE-BSSGGG
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEEC-----------------------------cEEeeccccC
Confidence 5799999 588899999999999999999987653321 1222344544
Q ss_pred c-cCCCEEEEeccCChHHHHHHHHHHHhhcCCCcee
Q 008604 224 F-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCIL 258 (560)
Q Consensus 224 ~-~~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii 258 (560)
. ...|+++.++| .+.--++++++.+.-....++
T Consensus 52 ~p~~iDlavv~~~--~~~~~~~v~~~~~~g~~~v~~ 85 (116)
T PF13380_consen 52 IPEPIDLAVVCVP--PDKVPEIVDEAAALGVKAVWL 85 (116)
T ss_dssp CSST-SEEEE-S---HHHHHHHHHHHHHHT-SEEEE
T ss_pred CCCCCCEEEEEcC--HHHHHHHHHHHHHcCCCEEEE
Confidence 4 68999999998 555667777776654444444
No 464
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.69 E-value=0.035 Score=57.91 Aligned_cols=40 Identities=23% Similarity=0.218 Sum_probs=34.7
Q ss_pred EEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHHH
Q 008604 149 KVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIG 188 (560)
Q Consensus 149 ~V~VIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~~ 188 (560)
+|.|+|+|.||...++.+...|. +|++.|+++++++.+.+
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~ 211 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKE 211 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH
Confidence 89999999999998888888884 78888999999987653
No 465
>PRK08223 hypothetical protein; Validated
Probab=94.68 E-value=0.067 Score=53.67 Aligned_cols=33 Identities=21% Similarity=0.192 Sum_probs=30.0
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCH
Q 008604 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~-~V~l~d~~~ 180 (560)
.+|.|||+|.+|+.++..|+.+|. +++++|-+.
T Consensus 28 s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 28 SRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 589999999999999999999997 789999764
No 466
>PRK06500 short chain dehydrogenase; Provisional
Probab=94.67 E-value=0.037 Score=54.18 Aligned_cols=38 Identities=26% Similarity=0.300 Sum_probs=33.3
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA 185 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~ 185 (560)
++|.|.|+ |.+|..++..|++.|++|++.+++.+.++.
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~ 45 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEA 45 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHH
Confidence 47888877 999999999999999999999999776554
No 467
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=94.67 E-value=0.056 Score=53.26 Aligned_cols=42 Identities=26% Similarity=0.252 Sum_probs=35.5
Q ss_pred ceEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 008604 147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (560)
Q Consensus 147 ~~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~ 188 (560)
-++|.|+|+ |.+|..++..|++.|++|++++++++.++...+
T Consensus 11 ~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~ 53 (256)
T PRK06124 11 GQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVA 53 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH
Confidence 367888876 899999999999999999999999877665443
No 468
>PLN02253 xanthoxin dehydrogenase
Probab=94.67 E-value=0.036 Score=55.58 Aligned_cols=39 Identities=15% Similarity=0.215 Sum_probs=32.6
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~ 186 (560)
++|.|.|+ |.+|..+|..|++.|++|++.+++++..++.
T Consensus 19 k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~ 58 (280)
T PLN02253 19 KVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQNV 58 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 45777765 8999999999999999999999987765543
No 469
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=94.67 E-value=0.053 Score=54.04 Aligned_cols=33 Identities=24% Similarity=0.366 Sum_probs=30.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCC-CcEEEEeCCH
Q 008604 148 KKVAILGGGLMGSGIATALILSN-YPVILKEVNE 180 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G-~~V~l~d~~~ 180 (560)
.+|.|||+|.+|+.+|..|+++| -+++++|.+.
T Consensus 31 s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 31 AHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 58999999999999999999999 5899999774
No 470
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=94.65 E-value=0.039 Score=54.71 Aligned_cols=38 Identities=18% Similarity=0.279 Sum_probs=32.8
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA 185 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~ 185 (560)
+++.|+|+ |.+|..+|..|++.|++|++.+++.+.++.
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~ 44 (262)
T TIGR03325 6 EVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQE 44 (262)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 46777776 889999999999999999999999876654
No 471
>PRK07035 short chain dehydrogenase; Provisional
Probab=94.63 E-value=0.053 Score=53.31 Aligned_cols=41 Identities=22% Similarity=0.140 Sum_probs=34.4
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~ 188 (560)
++|.|.|+ |.+|..++..|++.|++|++.+++.+.++...+
T Consensus 9 k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~ 50 (252)
T PRK07035 9 KIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVAD 50 (252)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 46777765 999999999999999999999999877665443
No 472
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=94.60 E-value=0.06 Score=53.47 Aligned_cols=42 Identities=21% Similarity=0.402 Sum_probs=35.1
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR 189 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~ 189 (560)
+++.|.|+ |.+|..++..|+..|++|++.+++++.+++....
T Consensus 11 k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~ 53 (265)
T PRK07097 11 KIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAA 53 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHH
Confidence 46777776 8999999999999999999999998877655433
No 473
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=94.59 E-value=0.078 Score=51.85 Aligned_cols=32 Identities=22% Similarity=0.493 Sum_probs=28.8
Q ss_pred EEEEEcCccchHHHHHHHHhCCC-cEEEEeCCH
Q 008604 149 KVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (560)
Q Consensus 149 ~V~VIG~G~mG~~iA~~l~~~G~-~V~l~d~~~ 180 (560)
||.|||+|.+|+.++..|+..|+ +++++|.+.
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~ 33 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDT 33 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 58999999999999999999997 688888763
No 474
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=94.58 E-value=0.062 Score=53.09 Aligned_cols=41 Identities=29% Similarity=0.298 Sum_probs=35.0
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG 188 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~ 188 (560)
++|.|.|+ |.+|..+|..|++.|++|++.+++.+.++...+
T Consensus 13 k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 54 (259)
T PRK08213 13 KTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAA 54 (259)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 57888876 999999999999999999999999877665443
No 475
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=94.58 E-value=0.055 Score=52.96 Aligned_cols=40 Identities=20% Similarity=0.266 Sum_probs=34.4
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~ 187 (560)
++|.|.|+ |.+|..++..|++.|++|++++++.+..++..
T Consensus 4 ~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~ 44 (250)
T TIGR03206 4 KTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVA 44 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHH
Confidence 57888876 99999999999999999999999987765443
No 476
>PRK05693 short chain dehydrogenase; Provisional
Probab=94.58 E-value=0.045 Score=54.69 Aligned_cols=37 Identities=24% Similarity=0.264 Sum_probs=32.5
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHH
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLE 184 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~ 184 (560)
++|.|.|+ |.+|..++..+++.|++|++.+++.+.++
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~ 39 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVE 39 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 56778876 99999999999999999999999987654
No 477
>PRK08589 short chain dehydrogenase; Validated
Probab=94.56 E-value=0.051 Score=54.30 Aligned_cols=42 Identities=19% Similarity=0.261 Sum_probs=33.9
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV 190 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i 190 (560)
+++.|.|+ |.+|..+|..|++.|++|++.+++ +.++...+.+
T Consensus 7 k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~ 49 (272)
T PRK08589 7 KVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKI 49 (272)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHH
Confidence 46777777 899999999999999999999999 6555444333
No 478
>PRK05875 short chain dehydrogenase; Provisional
Probab=94.52 E-value=0.064 Score=53.54 Aligned_cols=40 Identities=25% Similarity=0.419 Sum_probs=34.8
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~ 187 (560)
++|.|.|+ |.+|..++..|++.|++|++++++++.++...
T Consensus 8 k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 48 (276)
T PRK05875 8 RTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAA 48 (276)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 67888887 89999999999999999999999987765443
No 479
>PRK06270 homoserine dehydrogenase; Provisional
Probab=94.51 E-value=0.14 Score=53.08 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=19.8
Q ss_pred eEEEEEcCccchHHHHHHHHhC
Q 008604 148 KKVAILGGGLMGSGIATALILS 169 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~ 169 (560)
-+|+|+|+|+||+.++..+...
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~ 24 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEK 24 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHh
Confidence 4899999999999999988765
No 480
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=94.50 E-value=0.13 Score=49.25 Aligned_cols=174 Identities=16% Similarity=0.225 Sum_probs=100.9
Q ss_pred eEEEEEcC---ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHH--HHHcCCCCHHHHHhhhcccccccCcc
Q 008604 148 KKVAILGG---GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQS--RVKKGKMTQEKFEKTISLLTGVLDYE 222 (560)
Q Consensus 148 ~~V~VIG~---G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~--~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (560)
+++.|.|- =.++-+||+.+.++|.++.+.-.++ ++++-.+.+.+.+.. .++++..+.+++++.+..+. +
T Consensus 7 K~~lI~Gvan~rSIAwGIAk~l~~~GAeL~fTy~~e-~l~krv~~la~~~~s~~v~~cDV~~d~~i~~~f~~i~-----~ 80 (259)
T COG0623 7 KRILIMGVANNRSIAWGIAKALAEQGAELAFTYQGE-RLEKRVEELAEELGSDLVLPCDVTNDESIDALFATIK-----K 80 (259)
T ss_pred ceEEEEEecccccHHHHHHHHHHHcCCEEEEEeccH-HHHHHHHHHHhhccCCeEEecCCCCHHHHHHHHHHHH-----H
Confidence 45666665 4578899999999999998877666 343333333222222 24666677777777776665 5
Q ss_pred cccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCcccHHHHHhhc----cCCCcEeecccCCCCCCCCeEEEE
Q 008604 223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERT----YSKDRIVGAHFFSPAHVMPLLEIV 298 (560)
Q Consensus 223 ~~~~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSsl~i~~la~~~----~~~~r~~g~hf~~P~~~~~lvEiv 298 (560)
....-|+++-|+.-- -|.++-....+.-.++-.++-+.|+++...++... ..-...+.+-|.--...+|-.-++
T Consensus 81 ~~g~lD~lVHsIaFa--~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~~ggSiltLtYlgs~r~vPnYNvM 158 (259)
T COG0623 81 KWGKLDGLVHSIAFA--PKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMNNGGSILTLTYLGSERVVPNYNVM 158 (259)
T ss_pred hhCcccEEEEEeccC--ChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcCCCCcEEEEEeccceeecCCCchh
Confidence 677889999998421 12222222222223333455678888887777654 234556666665332222222122
Q ss_pred eCCCCcHHHHHH-HHHHHHhcCCceEEecC-ccccc
Q 008604 299 RTNQTSPQVIVD-LLDIGKKIKKTPIVVGN-CTGFA 332 (560)
Q Consensus 299 ~g~~t~~e~~~~-~~~l~~~lGk~~i~v~d-~~G~i 332 (560)
.- ..+.++. ++-++..+|+.-|+|+. +.|-|
T Consensus 159 Gv---AKAaLEasvRyLA~dlG~~gIRVNaISAGPI 191 (259)
T COG0623 159 GV---AKAALEASVRYLAADLGKEGIRVNAISAGPI 191 (259)
T ss_pred HH---HHHHHHHHHHHHHHHhCccCeEEeeecccch
Confidence 21 2344444 44455669999999985 34433
No 481
>PRK05599 hypothetical protein; Provisional
Probab=94.49 E-value=0.067 Score=52.63 Aligned_cols=80 Identities=16% Similarity=0.181 Sum_probs=50.1
Q ss_pred EEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHH---HHHHcCCCCHHHHHhhhcccccccCcccc
Q 008604 149 KVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQ---SRVKKGKMTQEKFEKTISLLTGVLDYESF 224 (560)
Q Consensus 149 ~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~---~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 224 (560)
.|.|.|+ +.+|.++|..|+ .|++|++.+++.+.+++..+.++..-. ..+..+..+.+++++..+.+. +..
T Consensus 2 ~vlItGas~GIG~aia~~l~-~g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~-----~~~ 75 (246)
T PRK05599 2 SILILGGTSDIAGEIATLLC-HGEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQ-----ELA 75 (246)
T ss_pred eEEEEeCccHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHH-----Hhc
Confidence 4677777 779999999998 599999999999888766555433210 012223334444444443332 223
Q ss_pred cCCCEEEEec
Q 008604 225 KDVDMVIEAI 234 (560)
Q Consensus 225 ~~aDlVIeav 234 (560)
...|++|.+.
T Consensus 76 g~id~lv~na 85 (246)
T PRK05599 76 GEISLAVVAF 85 (246)
T ss_pred CCCCEEEEec
Confidence 5567777654
No 482
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=94.49 E-value=0.051 Score=54.53 Aligned_cols=81 Identities=19% Similarity=0.267 Sum_probs=48.3
Q ss_pred eEEEEEcC---ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHH--HHHHcCCCCHHHHHhhhcccccccCcc
Q 008604 148 KKVAILGG---GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQ--SRVKKGKMTQEKFEKTISLLTGVLDYE 222 (560)
Q Consensus 148 ~~V~VIG~---G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~--~~~~~g~~~~~~~~~~~~~i~~~~~~~ 222 (560)
+.|.|.|+ +.+|..+|..|++.|++|++.+++.+. .+..+.+...+. ..+..+..+.+++++..+.+. +
T Consensus 6 k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~-~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~i~-----~ 79 (274)
T PRK08415 6 KKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEAL-KKRVEPIAQELGSDYVYELDVSKPEHFKSLAESLK-----K 79 (274)
T ss_pred cEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHH-HHHHHHHHHhcCCceEEEecCCCHHHHHHHHHHHH-----H
Confidence 46667787 479999999999999999999998532 222222211110 112233344444554444332 2
Q ss_pred cccCCCEEEEec
Q 008604 223 SFKDVDMVIEAI 234 (560)
Q Consensus 223 ~~~~aDlVIeav 234 (560)
.+...|++|.+.
T Consensus 80 ~~g~iDilVnnA 91 (274)
T PRK08415 80 DLGKIDFIVHSV 91 (274)
T ss_pred HcCCCCEEEECC
Confidence 345678888776
No 483
>PRK07069 short chain dehydrogenase; Validated
Probab=94.48 E-value=0.053 Score=53.10 Aligned_cols=38 Identities=29% Similarity=0.363 Sum_probs=31.3
Q ss_pred EEEEEcC-ccchHHHHHHHHhCCCcEEEEeCC-HHHHHHH
Q 008604 149 KVAILGG-GLMGSGIATALILSNYPVILKEVN-EKFLEAG 186 (560)
Q Consensus 149 ~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~-~~~~~~~ 186 (560)
+|.|.|+ |.+|..++..|++.|++|++.+++ .+.++..
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~ 40 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQGAKVFLTDINDAAGLDAF 40 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcchHHHHH
Confidence 3677765 999999999999999999999998 5555443
No 484
>PRK06720 hypothetical protein; Provisional
Probab=94.47 E-value=0.085 Score=48.91 Aligned_cols=39 Identities=23% Similarity=0.262 Sum_probs=31.8
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~ 186 (560)
+.+.|.|+ |.+|.++|..|++.|++|+++|++.+.++..
T Consensus 17 k~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~ 56 (169)
T PRK06720 17 KVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQAT 56 (169)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 35666677 5699999999999999999999998765443
No 485
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=94.46 E-value=0.082 Score=51.38 Aligned_cols=39 Identities=28% Similarity=0.303 Sum_probs=34.4
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG 186 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~ 186 (560)
++|.|.|+ |.+|..++..|++.|++|++++++++..+..
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~ 45 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEAL 45 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHH
Confidence 57889987 9999999999999999999999998766543
No 486
>PRK06182 short chain dehydrogenase; Validated
Probab=94.44 E-value=0.057 Score=53.93 Aligned_cols=38 Identities=21% Similarity=0.213 Sum_probs=33.5
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA 185 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~ 185 (560)
++|.|.|+ |.+|..++..|++.|++|++.+++++.++.
T Consensus 4 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~ 42 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMED 42 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 57888886 999999999999999999999999877653
No 487
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.43 E-value=0.44 Score=51.39 Aligned_cols=33 Identities=36% Similarity=0.482 Sum_probs=31.5
Q ss_pred eEEEEEcCccchHHHHHHHHhCCCcEEEEeCCH
Q 008604 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE 180 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~~V~l~d~~~ 180 (560)
++|.|+|+|.+|..+|..|++.|++|+++|++.
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 689999999999999999999999999999985
No 488
>PRK06949 short chain dehydrogenase; Provisional
Probab=94.43 E-value=0.072 Score=52.45 Aligned_cols=40 Identities=20% Similarity=0.183 Sum_probs=35.2
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~ 187 (560)
++|.|.|+ |.+|..++..|++.|++|++.+++++.++...
T Consensus 10 k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~ 50 (258)
T PRK06949 10 KVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELR 50 (258)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 67888876 99999999999999999999999988766544
No 489
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=94.42 E-value=0.54 Score=47.84 Aligned_cols=40 Identities=23% Similarity=0.262 Sum_probs=35.7
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 008604 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI 187 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~ 187 (560)
.+|+|+|+|.+|.+-.+.+..+|. .++.+|+++++++.++
T Consensus 187 ~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~ 227 (366)
T COG1062 187 DTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAK 227 (366)
T ss_pred CeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHH
Confidence 589999999999999999999986 5788999999988765
No 490
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=94.42 E-value=0.046 Score=57.03 Aligned_cols=33 Identities=24% Similarity=0.320 Sum_probs=30.3
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCH
Q 008604 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~-~V~l~d~~~ 180 (560)
.+|.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 29 ~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 29 AKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 589999999999999999999997 799999874
No 491
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=94.39 E-value=0.14 Score=49.35 Aligned_cols=99 Identities=25% Similarity=0.290 Sum_probs=57.4
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc--------
Q 008604 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-------- 218 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-------- 218 (560)
++|.|||.|.+|+-.+..|++.|. +++++|.+.=.+...-.++...+ -.-|...-+-+.+.+..|.+.
T Consensus 31 ~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~---~~iGk~Kv~vm~eri~~InP~c~V~~~~~ 107 (263)
T COG1179 31 AHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALL---GDIGKPKVEVMKERIKQINPECEVTAIND 107 (263)
T ss_pred CcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhh---hhcccHHHHHHHHHHHhhCCCceEeehHh
Confidence 589999999999999999999997 78888876533222111111110 011111111122222221111
Q ss_pred ----cCccc--ccCCCEEEEeccCChHHHHHHHHHHHh
Q 008604 219 ----LDYES--FKDVDMVIEAIIENVSLKQQIFADLEK 250 (560)
Q Consensus 219 ----~~~~~--~~~aDlVIeav~e~~~~k~~~~~~l~~ 250 (560)
.++++ ..+-|+||+|+ +++..|..++.....
T Consensus 108 f~t~en~~~~~~~~~DyvIDai-D~v~~Kv~Li~~c~~ 144 (263)
T COG1179 108 FITEENLEDLLSKGFDYVIDAI-DSVRAKVALIAYCRR 144 (263)
T ss_pred hhCHhHHHHHhcCCCCEEEEch-hhhHHHHHHHHHHHH
Confidence 11222 35789999998 578888888775544
No 492
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=94.37 E-value=0.12 Score=50.54 Aligned_cols=33 Identities=24% Similarity=0.299 Sum_probs=29.8
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCCH
Q 008604 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE 180 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~-~V~l~d~~~ 180 (560)
.+|.|||+|.+|+.+|..|+..|. +++++|.+.
T Consensus 22 ~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 589999999999999999999997 788998653
No 493
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=94.37 E-value=0.059 Score=56.79 Aligned_cols=32 Identities=22% Similarity=0.327 Sum_probs=30.2
Q ss_pred eEEEEEcCccchHHHHHHHHhCCC-cEEEEeCC
Q 008604 148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN 179 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~G~-~V~l~d~~ 179 (560)
++|.|||+|..|+.++..|+..|. +++++|.+
T Consensus 136 ~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 136 ARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 589999999999999999999998 79999987
No 494
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=94.35 E-value=0.15 Score=51.02 Aligned_cols=32 Identities=28% Similarity=0.404 Sum_probs=26.3
Q ss_pred eEEEEEc-CccchHHHHHHHHh-CCCcEEE-EeCC
Q 008604 148 KKVAILG-GGLMGSGIATALIL-SNYPVIL-KEVN 179 (560)
Q Consensus 148 ~~V~VIG-~G~mG~~iA~~l~~-~G~~V~l-~d~~ 179 (560)
.||+|+| +|.||..++..+.. .+++++. +|++
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~ 36 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERH 36 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 4899999 59999999999986 5888665 7743
No 495
>PRK05717 oxidoreductase; Validated
Probab=94.35 E-value=0.052 Score=53.56 Aligned_cols=38 Identities=24% Similarity=0.372 Sum_probs=32.8
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA 185 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~ 185 (560)
++|.|.|+ |.+|..+|..|++.|++|++.|++.+..+.
T Consensus 11 k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~ 49 (255)
T PRK05717 11 RVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSK 49 (255)
T ss_pred CEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHH
Confidence 56778876 999999999999999999999998776544
No 496
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=94.34 E-value=0.07 Score=52.40 Aligned_cols=40 Identities=28% Similarity=0.434 Sum_probs=33.6
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI 187 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~ 187 (560)
+++.|+|+ |.+|..++..|++.|++|++++++.+.++...
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 41 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETA 41 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 35778876 99999999999999999999999977665443
No 497
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=94.29 E-value=0.051 Score=53.90 Aligned_cols=82 Identities=15% Similarity=0.141 Sum_probs=46.9
Q ss_pred eEEEEEcC---ccchHHHHHHHHhCCCcEEEEeCCH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 008604 148 KKVAILGG---GLMGSGIATALILSNYPVILKEVNE---KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221 (560)
Q Consensus 148 ~~V~VIG~---G~mG~~iA~~l~~~G~~V~l~d~~~---~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 221 (560)
+.+.|.|+ +.+|..+|..|++.|++|++.+++. +.+++..+.+...-...+..+..+++++++..+.+.
T Consensus 8 k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~----- 82 (257)
T PRK08594 8 KTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIK----- 82 (257)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHH-----
Confidence 46777787 5899999999999999999998753 233322221110000112233444445544443332
Q ss_pred ccccCCCEEEEec
Q 008604 222 ESFKDVDMVIEAI 234 (560)
Q Consensus 222 ~~~~~aDlVIeav 234 (560)
+.+...|++|.++
T Consensus 83 ~~~g~ld~lv~na 95 (257)
T PRK08594 83 EEVGVIHGVAHCI 95 (257)
T ss_pred HhCCCccEEEECc
Confidence 2345677777765
No 498
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=94.28 E-value=0.16 Score=52.80 Aligned_cols=106 Identities=13% Similarity=0.069 Sum_probs=55.8
Q ss_pred eEEEEEcCccchHHHHHHHHhC-CCcEEE-EeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhh-hcccccccCcc-c
Q 008604 148 KKVAILGGGLMGSGIATALILS-NYPVIL-KEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKT-ISLLTGVLDYE-S 223 (560)
Q Consensus 148 ~~V~VIG~G~mG~~iA~~l~~~-G~~V~l-~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~-~~~i~~~~~~~-~ 223 (560)
.||+|+|+|.||..++..+... +++|+. .|.+++......++. .++.. +. .++..... -..+....+++ .
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~--G~~~~---~~-~~~~~~~~~~~~i~V~~~~~el 75 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEK--GYPLY---VA-DPEREKAFEEAGIPVAGTIEDL 75 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhc--CCCcc---cc-CccccccccCCceEEcCChhHh
Confidence 5899999999999999988764 777665 555554333221110 00000 00 00000000 01133333443 3
Q ss_pred ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeccCCc
Q 008604 224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264 (560)
Q Consensus 224 ~~~aDlVIeav~e~~~~k~~~~~~l~~~~~~~~ii~sntSs 264 (560)
+.++|+||+|.+.... .+... .++..++.+++|.|.
T Consensus 76 ~~~vDVVIdaT~~~~~--~e~a~---~~~~aGk~VI~~~~~ 111 (341)
T PRK04207 76 LEKADIVVDATPGGVG--AKNKE---LYEKAGVKAIFQGGE 111 (341)
T ss_pred hccCCEEEECCCchhh--HHHHH---HHHHCCCEEEEcCCC
Confidence 4689999999985533 22222 334445666667664
No 499
>PRK06180 short chain dehydrogenase; Provisional
Probab=94.26 E-value=0.059 Score=53.97 Aligned_cols=39 Identities=21% Similarity=0.135 Sum_probs=33.8
Q ss_pred ceEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 008604 147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA 185 (560)
Q Consensus 147 ~~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~ 185 (560)
.++|.|.|+ |.+|..++..|++.|++|++.+++++.++.
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~ 43 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARAD 43 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHH
Confidence 356888877 999999999999999999999999876543
No 500
>PRK05855 short chain dehydrogenase; Validated
Probab=94.24 E-value=0.11 Score=57.55 Aligned_cols=42 Identities=21% Similarity=0.229 Sum_probs=35.8
Q ss_pred eEEEEEcC-ccchHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 008604 148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR 189 (560)
Q Consensus 148 ~~V~VIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~ 189 (560)
+++.|+|+ |.+|..+|..|++.|++|++.+++.+.++...+.
T Consensus 316 ~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~ 358 (582)
T PRK05855 316 KLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAEL 358 (582)
T ss_pred CEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 57888876 9999999999999999999999998877655433
Done!