Query 008605
Match_columns 560
No_of_seqs 333 out of 2392
Neff 7.1
Searched_HMMs 46136
Date Thu Mar 28 14:16:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008605.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008605hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0330 ATP-dependent RNA heli 100.0 2.1E-46 4.5E-51 379.2 21.6 265 266-553 59-324 (476)
2 KOG0331 ATP-dependent RNA heli 100.0 6.6E-45 1.4E-49 388.9 27.4 271 266-553 89-365 (519)
3 COG0513 SrmB Superfamily II DN 100.0 1E-42 2.3E-47 382.7 30.7 267 268-553 29-297 (513)
4 KOG0338 ATP-dependent RNA heli 100.0 2.9E-42 6.3E-47 358.1 20.7 268 268-552 181-449 (691)
5 KOG0328 Predicted ATP-dependen 100.0 6.6E-42 1.4E-46 333.8 18.8 267 265-553 24-290 (400)
6 PTZ00110 helicase; Provisional 100.0 1.5E-40 3.3E-45 368.5 31.8 267 268-552 130-400 (545)
7 KOG0333 U5 snRNP-like RNA heli 100.0 4.7E-41 1E-45 350.4 24.0 308 218-553 209-541 (673)
8 PRK04837 ATP-dependent RNA hel 100.0 4.5E-40 9.7E-45 355.0 32.4 271 267-553 7-279 (423)
9 PRK11776 ATP-dependent RNA hel 100.0 5.1E-40 1.1E-44 358.2 31.6 263 268-553 4-266 (460)
10 KOG0341 DEAD-box protein abstr 100.0 1.4E-42 3.1E-47 350.1 9.1 314 222-550 122-442 (610)
11 PRK11634 ATP-dependent RNA hel 100.0 1E-39 2.2E-44 366.0 31.9 264 268-553 6-269 (629)
12 PRK10590 ATP-dependent RNA hel 100.0 1.2E-39 2.6E-44 354.8 31.3 267 269-552 2-268 (456)
13 KOG0343 RNA Helicase [RNA proc 100.0 1.4E-40 3E-45 348.2 22.3 267 267-553 68-337 (758)
14 PRK04537 ATP-dependent RNA hel 100.0 2.3E-39 4.9E-44 360.6 31.5 270 268-553 9-281 (572)
15 PLN00206 DEAD-box ATP-dependen 100.0 4.3E-39 9.3E-44 355.4 32.7 270 267-553 120-391 (518)
16 KOG0326 ATP-dependent RNA heli 100.0 5.3E-41 1.2E-45 332.1 14.8 263 267-553 84-346 (459)
17 PRK11192 ATP-dependent RNA hel 100.0 3.7E-38 8E-43 341.1 32.7 266 269-552 2-268 (434)
18 KOG0342 ATP-dependent RNA heli 100.0 4.1E-39 8.9E-44 334.7 23.9 269 266-552 80-353 (543)
19 KOG0345 ATP-dependent RNA heli 100.0 9.1E-39 2E-43 330.1 25.8 268 268-552 4-278 (567)
20 KOG0339 ATP-dependent RNA heli 100.0 4.1E-39 8.8E-44 334.2 23.1 269 266-551 221-490 (731)
21 KOG0346 RNA helicase [RNA proc 100.0 4.9E-39 1.1E-43 329.5 22.3 270 268-553 19-292 (569)
22 KOG0335 ATP-dependent RNA heli 100.0 6.4E-39 1.4E-43 337.9 19.5 273 268-553 74-361 (482)
23 PRK01297 ATP-dependent RNA hel 100.0 8.7E-37 1.9E-41 334.1 35.0 270 268-553 87-359 (475)
24 KOG0348 ATP-dependent RNA heli 100.0 3.4E-38 7.4E-43 329.5 21.5 273 264-552 132-448 (708)
25 KOG0340 ATP-dependent RNA heli 100.0 4.3E-38 9.2E-43 315.7 20.0 264 267-553 6-278 (442)
26 KOG0334 RNA helicase [RNA proc 100.0 2.5E-37 5.4E-42 345.6 21.0 270 267-553 364-637 (997)
27 PTZ00424 helicase 45; Provisio 100.0 6.3E-36 1.4E-40 319.9 30.4 263 268-552 28-290 (401)
28 KOG0336 ATP-dependent RNA heli 100.0 2.3E-37 5E-42 314.3 17.0 264 268-549 219-485 (629)
29 KOG0332 ATP-dependent RNA heli 100.0 3.5E-37 7.7E-42 310.6 17.1 274 260-557 82-358 (477)
30 KOG0347 RNA helicase [RNA proc 100.0 1.7E-36 3.8E-41 317.5 16.6 272 266-552 179-486 (731)
31 KOG0337 ATP-dependent RNA heli 100.0 8.6E-36 1.9E-40 304.4 17.2 265 268-554 21-286 (529)
32 KOG4284 DEAD box protein [Tran 100.0 1.7E-35 3.7E-40 314.1 17.1 272 267-552 24-295 (980)
33 KOG0327 Translation initiation 100.0 7.6E-35 1.6E-39 296.0 16.0 261 268-553 26-287 (397)
34 KOG0329 ATP-dependent RNA heli 100.0 1.1E-33 2.3E-38 273.0 14.4 253 268-541 42-295 (387)
35 TIGR03817 DECH_helic helicase/ 100.0 3.9E-31 8.4E-36 302.0 30.4 258 275-552 21-294 (742)
36 KOG0350 DEAD-box ATP-dependent 100.0 1.8E-31 3.9E-36 277.7 22.3 266 268-555 127-456 (620)
37 cd00268 DEADc DEAD-box helicas 100.0 4.9E-30 1.1E-34 248.9 25.0 202 270-480 1-202 (203)
38 PRK00254 ski2-like helicase; P 100.0 4.7E-30 1E-34 293.9 27.4 253 269-551 2-260 (720)
39 PRK02362 ski2-like helicase; P 100.0 3.6E-30 7.7E-35 295.6 26.2 258 269-552 2-266 (737)
40 COG1201 Lhr Lhr-like helicases 100.0 7.1E-29 1.5E-33 279.0 25.2 262 275-553 8-277 (814)
41 PRK13767 ATP-dependent helicas 100.0 2.1E-28 4.6E-33 284.4 27.0 267 275-552 18-307 (876)
42 TIGR02621 cas3_GSU0051 CRISPR- 100.0 4.6E-28 9.9E-33 273.8 26.3 240 286-553 12-296 (844)
43 KOG0344 ATP-dependent RNA heli 100.0 7.5E-29 1.6E-33 263.6 17.5 271 267-552 131-410 (593)
44 PRK01172 ski2-like helicase; P 100.0 6.8E-28 1.5E-32 274.5 24.7 255 269-552 2-259 (674)
45 TIGR00614 recQ_fam ATP-depende 100.0 4.1E-27 9E-32 257.4 27.3 232 285-553 6-250 (470)
46 PLN03137 ATP-dependent DNA hel 100.0 5.2E-27 1.1E-31 269.0 26.4 249 268-553 435-704 (1195)
47 PRK09401 reverse gyrase; Revie 100.0 1.8E-26 4E-31 272.5 27.9 234 286-553 77-355 (1176)
48 PRK11057 ATP-dependent DNA hel 99.9 1E-25 2.2E-30 253.3 27.1 239 276-553 10-260 (607)
49 TIGR01389 recQ ATP-dependent D 99.9 1E-25 2.2E-30 253.1 27.0 232 282-552 4-247 (591)
50 PRK14701 reverse gyrase; Provi 99.9 1.6E-25 3.4E-30 269.9 27.9 245 277-552 66-356 (1638)
51 TIGR01054 rgy reverse gyrase. 99.9 7.1E-25 1.5E-29 259.4 26.9 242 277-552 65-352 (1171)
52 PF00270 DEAD: DEAD/DEAH box h 99.9 2.8E-25 6E-30 208.3 18.2 164 292-467 1-167 (169)
53 COG1204 Superfamily II helicas 99.9 6.4E-25 1.4E-29 249.4 20.7 251 275-551 16-275 (766)
54 TIGR00580 mfd transcription-re 99.9 2.3E-23 5E-28 241.2 28.8 237 275-552 436-683 (926)
55 PRK10689 transcription-repair 99.9 2.7E-23 5.9E-28 245.3 29.5 234 278-552 589-832 (1147)
56 PRK09751 putative ATP-dependen 99.9 1.2E-23 2.7E-28 249.9 24.6 236 310-552 1-267 (1490)
57 COG1202 Superfamily II helicas 99.9 6.2E-24 1.4E-28 224.5 19.5 254 268-552 194-463 (830)
58 COG1205 Distinct helicase fami 99.9 3.9E-23 8.5E-28 237.8 26.8 263 276-553 56-334 (851)
59 KOG0952 DNA/RNA helicase MER3/ 99.9 6.2E-24 1.4E-28 236.8 19.4 255 285-554 105-374 (1230)
60 PRK10917 ATP-dependent DNA hel 99.9 6.1E-22 1.3E-26 225.3 27.6 236 277-552 248-502 (681)
61 TIGR03158 cas3_cyano CRISPR-as 99.9 1.1E-21 2.4E-26 207.4 26.5 237 294-552 1-295 (357)
62 KOG0349 Putative DEAD-box RNA 99.9 5.6E-23 1.2E-27 210.8 12.9 210 344-554 285-530 (725)
63 PHA02653 RNA helicase NPH-II; 99.9 1.6E-21 3.5E-26 219.1 25.0 239 292-552 166-418 (675)
64 TIGR00643 recG ATP-dependent D 99.9 2.7E-21 5.9E-26 218.4 26.8 165 278-466 224-400 (630)
65 TIGR01587 cas3_core CRISPR-ass 99.9 1.8E-21 4E-26 205.4 20.2 220 307-553 1-246 (358)
66 PRK11664 ATP-dependent RNA hel 99.9 1.5E-20 3.3E-25 216.1 25.9 222 296-551 11-234 (812)
67 TIGR01970 DEAH_box_HrpB ATP-de 99.9 2.6E-20 5.6E-25 213.9 26.1 223 295-551 7-231 (819)
68 COG0514 RecQ Superfamily II DN 99.9 7.1E-21 1.5E-25 207.9 18.9 235 281-552 7-253 (590)
69 PHA02558 uvsW UvsW helicase; P 99.8 1E-19 2.2E-24 200.7 20.3 239 288-553 112-368 (501)
70 KOG0947 Cytoplasmic exosomal R 99.8 1.8E-19 4E-24 199.4 20.3 162 285-474 293-454 (1248)
71 COG4581 Superfamily II RNA hel 99.8 4.1E-19 8.9E-24 203.2 21.2 246 283-552 113-402 (1041)
72 KOG0948 Nuclear exosomal RNA h 99.8 2.3E-19 4.9E-24 194.6 16.5 236 290-552 129-406 (1041)
73 smart00487 DEXDc DEAD-like hel 99.8 2E-18 4.3E-23 163.5 20.3 184 285-480 3-188 (201)
74 PRK12899 secA preprotein trans 99.8 1.9E-19 4E-24 203.6 14.5 149 271-434 65-229 (970)
75 KOG0951 RNA helicase BRR2, DEA 99.8 6.4E-19 1.4E-23 199.2 17.6 260 274-551 295-568 (1674)
76 KOG0351 ATP-dependent DNA heli 99.8 1.7E-18 3.6E-23 199.1 21.2 241 278-553 251-509 (941)
77 PRK13766 Hef nuclease; Provisi 99.8 1.5E-17 3.2E-22 192.8 27.5 161 287-462 12-172 (773)
78 PRK12898 secA preprotein trans 99.8 6.6E-18 1.4E-22 187.9 23.2 129 287-433 101-255 (656)
79 KOG0353 ATP-dependent DNA heli 99.8 5.4E-18 1.2E-22 172.0 18.3 248 272-553 75-341 (695)
80 KOG0352 ATP-dependent DNA heli 99.8 1.8E-18 3.8E-23 178.0 14.1 241 278-552 6-278 (641)
81 PRK09200 preprotein translocas 99.8 6.5E-17 1.4E-21 183.5 24.3 131 286-433 75-212 (790)
82 PRK09694 helicase Cas3; Provis 99.8 5.7E-17 1.2E-21 186.7 24.1 175 288-474 284-492 (878)
83 TIGR03714 secA2 accessory Sec 99.8 6.6E-17 1.4E-21 182.0 22.6 133 286-434 67-209 (762)
84 TIGR00963 secA preprotein tran 99.7 3.8E-17 8.1E-22 183.0 20.0 130 287-434 54-190 (745)
85 PRK05580 primosome assembly pr 99.7 1.7E-16 3.8E-21 180.4 24.7 157 290-470 144-312 (679)
86 PRK11131 ATP-dependent RNA hel 99.7 4E-16 8.6E-21 183.6 23.8 221 295-552 79-309 (1294)
87 COG1111 MPH1 ERCC4-like helica 99.7 3E-15 6.6E-20 158.2 20.7 163 287-464 12-174 (542)
88 PRK13104 secA preprotein trans 99.7 2.6E-15 5.5E-20 170.6 21.5 128 290-434 82-216 (896)
89 KOG0354 DEAD-box like helicase 99.7 9.3E-16 2E-20 170.1 15.1 163 287-463 59-222 (746)
90 cd00046 DEXDc DEAD-like helica 99.6 4.8E-15 1E-19 132.1 15.9 144 306-462 1-144 (144)
91 PRK12904 preprotein translocas 99.6 1.2E-14 2.6E-19 164.9 22.3 129 287-433 79-214 (830)
92 TIGR00603 rad25 DNA repair hel 99.6 8.5E-15 1.8E-19 165.0 17.7 234 289-550 254-517 (732)
93 COG1061 SSL2 DNA or RNA helica 99.6 6.5E-15 1.4E-19 160.0 15.5 234 289-552 35-306 (442)
94 TIGR01967 DEAH_box_HrpA ATP-de 99.6 9.6E-14 2.1E-18 164.2 24.7 234 286-552 60-302 (1283)
95 TIGR00595 priA primosomal prot 99.6 7E-14 1.5E-18 154.0 20.3 137 309-469 1-146 (505)
96 KOG0950 DNA polymerase theta/e 99.5 2.4E-14 5.2E-19 160.3 12.8 185 274-477 206-400 (1008)
97 PF04851 ResIII: Type III rest 99.5 2.8E-14 6.1E-19 134.8 10.6 151 290-463 3-183 (184)
98 PRK11448 hsdR type I restricti 99.5 5.1E-13 1.1E-17 158.2 22.9 161 290-465 413-597 (1123)
99 COG1200 RecG RecG-like helicas 99.5 1.3E-12 2.8E-17 143.5 20.4 226 275-543 247-487 (677)
100 COG1197 Mfd Transcription-repa 99.5 5.6E-12 1.2E-16 145.4 24.0 223 287-552 592-826 (1139)
101 COG1110 Reverse gyrase [DNA re 99.5 6.3E-12 1.4E-16 141.8 23.1 233 287-553 80-362 (1187)
102 COG4098 comFA Superfamily II D 99.5 1.4E-11 3.1E-16 124.9 23.1 227 290-555 97-332 (441)
103 PRK13107 preprotein translocas 99.4 2.3E-12 4.9E-17 146.5 17.1 128 290-434 82-216 (908)
104 COG1203 CRISPR-associated heli 99.4 3E-12 6.4E-17 147.3 17.1 245 290-554 195-465 (733)
105 TIGR00348 hsdR type I site-spe 99.3 7.6E-11 1.7E-15 134.3 20.9 151 291-463 239-403 (667)
106 COG4096 HsdR Type I site-speci 99.3 7E-11 1.5E-15 131.7 18.1 159 289-474 164-332 (875)
107 KOG0951 RNA helicase BRR2, DEA 99.3 3E-11 6.5E-16 138.0 13.8 236 288-554 1141-1384(1674)
108 TIGR01407 dinG_rel DnaQ family 99.3 8.3E-11 1.8E-15 137.7 16.7 96 276-384 232-333 (850)
109 KOG0949 Predicted helicase, DE 99.2 4.5E-11 9.8E-16 133.9 12.2 159 290-463 511-672 (1330)
110 COG1643 HrpA HrpA-like helicas 99.2 6.2E-10 1.4E-14 127.5 21.7 226 295-551 55-281 (845)
111 COG1198 PriA Primosomal protei 99.2 6.1E-10 1.3E-14 125.9 20.5 223 289-542 197-433 (730)
112 TIGR03117 cas_csf4 CRISPR-asso 99.2 2.7E-10 6E-15 127.5 15.3 74 300-383 11-86 (636)
113 PRK12906 secA preprotein trans 99.1 1.9E-09 4.2E-14 122.5 19.6 129 287-433 78-213 (796)
114 PRK04914 ATP-dependent helicas 99.1 3E-09 6.5E-14 124.2 20.9 157 290-462 152-315 (956)
115 KOG0922 DEAH-box RNA helicase 99.1 8.5E-09 1.8E-13 112.9 22.4 224 295-553 56-282 (674)
116 PRK07246 bifunctional ATP-depe 99.1 9.2E-10 2E-14 127.9 15.1 132 286-433 242-449 (820)
117 KOG0920 ATP-dependent RNA heli 99.1 6.7E-09 1.5E-13 119.0 21.2 243 292-553 175-437 (924)
118 PRK12326 preprotein translocas 99.0 4.5E-08 9.7E-13 109.7 21.8 129 287-433 76-211 (764)
119 smart00488 DEXDc2 DEAD-like he 98.9 1.1E-08 2.3E-13 105.5 14.3 73 290-368 8-84 (289)
120 smart00489 DEXDc3 DEAD-like he 98.9 1.1E-08 2.3E-13 105.5 14.3 73 290-368 8-84 (289)
121 PF07652 Flavi_DEAD: Flaviviru 98.9 6.1E-09 1.3E-13 95.1 9.9 134 305-466 4-140 (148)
122 PRK08074 bifunctional ATP-depe 98.9 2.1E-08 4.6E-13 118.4 15.8 83 287-383 255-345 (928)
123 KOG0926 DEAH-box RNA helicase 98.8 6.8E-08 1.5E-12 107.1 16.0 227 297-552 263-504 (1172)
124 KOG0925 mRNA splicing factor A 98.8 2.8E-07 6E-12 97.6 19.1 250 267-551 24-275 (699)
125 PF00176 SNF2_N: SNF2 family N 98.8 4.5E-08 9.7E-13 100.0 12.3 145 305-462 25-172 (299)
126 PLN03142 Probable chromatin-re 98.7 4.6E-07 9.9E-12 106.7 17.5 154 290-462 169-329 (1033)
127 KOG2340 Uncharacterized conser 98.7 4E-07 8.7E-12 97.3 14.9 263 287-552 213-575 (698)
128 CHL00122 secA preprotein trans 98.7 1.2E-06 2.7E-11 100.0 19.7 130 286-433 73-209 (870)
129 KOG0952 DNA/RNA helicase MER3/ 98.6 2.3E-08 4.9E-13 113.7 4.9 238 290-552 927-1176(1230)
130 PRK13103 secA preprotein trans 98.6 1.2E-07 2.6E-12 108.7 10.4 128 289-433 81-215 (913)
131 KOG0924 mRNA splicing factor A 98.6 1.5E-06 3.3E-11 95.2 18.3 222 292-551 358-585 (1042)
132 KOG0923 mRNA splicing factor A 98.6 1E-06 2.2E-11 96.3 16.1 224 292-553 267-497 (902)
133 PF06862 DUF1253: Protein of u 98.6 3.5E-06 7.5E-11 90.7 19.7 208 340-550 32-321 (442)
134 KOG4150 Predicted ATP-dependen 98.6 1.2E-06 2.6E-11 94.3 15.2 258 279-552 275-548 (1034)
135 PF07517 SecA_DEAD: SecA DEAD- 98.6 1.1E-06 2.5E-11 89.0 14.1 130 289-435 76-212 (266)
136 PRK14873 primosome assembly pr 98.5 1.1E-06 2.4E-11 99.8 15.5 135 314-470 169-311 (665)
137 KOG1123 RNA polymerase II tran 98.5 2E-07 4.4E-12 98.9 8.4 148 289-463 301-459 (776)
138 TIGR02562 cas3_yersinia CRISPR 98.5 8.6E-07 1.9E-11 102.7 13.8 172 290-474 408-646 (1110)
139 PRK11747 dinG ATP-dependent DN 98.5 2E-06 4.3E-11 98.9 14.7 64 287-362 23-95 (697)
140 PRK12903 secA preprotein trans 98.4 2E-05 4.4E-10 90.1 20.6 129 287-433 76-211 (925)
141 PRK15483 type III restriction- 98.4 2.9E-06 6.2E-11 98.5 13.5 144 306-464 60-240 (986)
142 COG1199 DinG Rad3-related DNA 98.4 1.7E-06 3.7E-11 99.0 11.6 74 284-368 9-86 (654)
143 PF02399 Herpes_ori_bp: Origin 98.3 1.2E-05 2.5E-10 91.3 15.8 223 308-553 52-306 (824)
144 KOG0390 DNA repair protein, SN 98.2 4.3E-05 9.3E-10 86.9 18.4 161 290-463 238-415 (776)
145 COG4889 Predicted helicase [Ge 98.2 5.9E-06 1.3E-10 92.8 10.9 139 279-433 150-317 (1518)
146 KOG0385 Chromatin remodeling c 98.2 2.3E-05 5E-10 87.3 14.4 154 290-462 167-327 (971)
147 PRK12902 secA preprotein trans 98.1 1.1E-05 2.4E-10 92.4 10.8 127 290-433 85-218 (939)
148 PF13086 AAA_11: AAA domain; P 98.0 7E-05 1.5E-09 73.1 11.8 73 291-367 2-75 (236)
149 COG0610 Type I site-specific r 97.9 6.6E-05 1.4E-09 89.0 13.1 136 306-462 274-413 (962)
150 PF13604 AAA_30: AAA domain; P 97.9 4.8E-05 1E-09 74.0 9.7 124 290-462 1-131 (196)
151 PF02562 PhoH: PhoH-like prote 97.8 8.3E-05 1.8E-09 72.7 9.4 144 290-461 4-155 (205)
152 KOG0387 Transcription-coupled 97.8 0.00016 3.4E-09 81.2 12.6 164 273-463 196-376 (923)
153 KOG0389 SNF2 family DNA-depend 97.7 0.00018 3.8E-09 80.7 11.1 155 291-463 400-563 (941)
154 KOG0391 SNF2 family DNA-depend 97.6 0.0015 3.4E-08 75.8 16.7 152 291-462 616-775 (1958)
155 PF13872 AAA_34: P-loop contai 97.6 0.00095 2E-08 68.5 13.4 171 272-466 25-224 (303)
156 PRK10536 hypothetical protein; 97.5 0.0021 4.6E-08 64.8 14.0 146 286-459 55-210 (262)
157 TIGR00604 rad3 DNA repair heli 97.5 0.00043 9.3E-09 80.1 10.4 74 287-369 7-84 (705)
158 KOG1000 Chromatin remodeling p 97.5 0.00065 1.4E-08 72.9 10.7 150 290-462 198-348 (689)
159 COG3587 Restriction endonuclea 97.5 0.00045 9.8E-09 78.3 9.5 144 307-467 76-247 (985)
160 PF09848 DUF2075: Uncharacteri 97.5 0.0005 1.1E-08 72.9 9.5 109 307-448 3-117 (352)
161 KOG4439 RNA polymerase II tran 97.4 0.00044 9.5E-09 76.8 8.8 139 290-433 325-476 (901)
162 KOG1002 Nucleotide excision re 97.4 0.0012 2.7E-08 70.7 11.8 126 290-433 184-329 (791)
163 TIGR01448 recD_rel helicase, p 97.4 0.0021 4.6E-08 74.4 14.6 131 289-461 322-452 (720)
164 PRK10875 recD exonuclease V su 97.4 0.0013 2.8E-08 74.5 12.5 142 292-461 154-301 (615)
165 KOG1802 RNA helicase nonsense 97.4 0.0011 2.4E-08 73.2 11.0 72 286-368 406-477 (935)
166 PF14617 CMS1: U3-containing 9 97.3 0.00061 1.3E-08 68.6 7.2 87 342-430 123-211 (252)
167 TIGR01447 recD exodeoxyribonuc 97.3 0.0031 6.7E-08 71.2 13.5 143 292-461 147-295 (586)
168 PF12340 DUF3638: Protein of u 97.3 0.0056 1.2E-07 60.7 13.5 151 269-433 4-185 (229)
169 KOG1803 DNA helicase [Replicat 97.2 0.0012 2.7E-08 72.5 9.4 64 290-365 185-249 (649)
170 TIGR00376 DNA helicase, putati 97.2 0.0028 6.1E-08 72.4 12.5 66 290-367 157-223 (637)
171 PF13245 AAA_19: Part of AAA d 97.1 0.0025 5.5E-08 52.3 7.5 60 298-365 2-62 (76)
172 PRK12900 secA preprotein trans 97.0 0.0012 2.6E-08 76.9 7.2 127 290-433 138-271 (1025)
173 PRK13889 conjugal transfer rel 97.0 0.0077 1.7E-07 71.5 13.2 123 290-461 346-470 (988)
174 TIGR02768 TraA_Ti Ti-type conj 96.9 0.015 3.2E-07 67.8 15.0 121 290-459 352-474 (744)
175 KOG1132 Helicase of the DEAD s 96.9 0.0083 1.8E-07 68.6 12.3 79 290-368 21-133 (945)
176 PRK08181 transposase; Validate 96.8 0.014 3E-07 59.6 11.9 21 302-322 103-123 (269)
177 PF13401 AAA_22: AAA domain; P 96.8 0.0021 4.6E-08 57.2 5.2 20 304-323 3-22 (131)
178 PRK12901 secA preprotein trans 96.7 0.0028 6E-08 74.1 7.0 127 290-433 169-303 (1112)
179 KOG0392 SNF2 family DNA-depend 96.7 0.013 2.9E-07 68.9 12.1 159 291-462 976-1138(1549)
180 KOG0384 Chromodomain-helicase 96.7 0.0071 1.5E-07 71.2 9.9 152 289-462 369-535 (1373)
181 KOG0989 Replication factor C, 96.7 0.0085 1.8E-07 61.4 9.1 57 415-473 124-183 (346)
182 PRK05703 flhF flagellar biosyn 96.6 0.074 1.6E-06 57.9 16.7 70 402-475 285-355 (424)
183 PRK12723 flagellar biosynthesi 96.6 0.04 8.7E-07 59.2 14.3 68 403-474 241-309 (388)
184 PRK06526 transposase; Provisio 96.6 0.0082 1.8E-07 60.8 8.5 22 302-323 95-116 (254)
185 COG3421 Uncharacterized protei 96.6 0.0051 1.1E-07 67.7 7.1 144 310-465 2-168 (812)
186 COG1875 NYN ribonuclease and A 96.5 0.021 4.5E-07 59.9 11.2 143 286-459 224-385 (436)
187 PF00580 UvrD-helicase: UvrD/R 96.5 0.0061 1.3E-07 62.4 7.2 123 291-430 1-125 (315)
188 cd00009 AAA The AAA+ (ATPases 96.5 0.031 6.7E-07 49.5 10.9 17 305-321 19-35 (151)
189 PRK13826 Dtr system oriT relax 96.5 0.05 1.1E-06 65.3 15.4 137 275-461 367-505 (1102)
190 KOG0388 SNF2 family DNA-depend 96.3 0.019 4.2E-07 64.2 10.0 151 291-463 568-734 (1185)
191 PRK14722 flhF flagellar biosyn 96.3 0.029 6.4E-07 59.8 11.2 53 418-470 213-265 (374)
192 COG0556 UvrB Helicase subunit 96.3 0.0047 1E-07 67.2 4.9 65 290-369 12-81 (663)
193 PRK05642 DNA replication initi 96.2 0.018 3.9E-07 57.5 8.4 45 420-464 97-141 (234)
194 KOG0921 Dosage compensation co 96.1 0.017 3.7E-07 66.1 8.5 147 298-465 386-538 (1282)
195 PRK06893 DNA replication initi 96.1 0.019 4.1E-07 57.1 8.1 47 419-465 90-137 (229)
196 KOG0953 Mitochondrial RNA heli 96.1 0.0056 1.2E-07 66.8 4.3 95 308-433 194-288 (700)
197 PF05970 PIF1: PIF1-like helic 96.0 0.026 5.6E-07 60.2 9.1 59 291-361 2-66 (364)
198 PRK06921 hypothetical protein; 96.0 0.068 1.5E-06 54.5 11.6 27 304-331 116-142 (266)
199 KOG1805 DNA replication helica 96.0 0.024 5.1E-07 65.6 8.9 128 290-433 669-809 (1100)
200 TIGR02760 TraI_TIGR conjugativ 96.0 0.59 1.3E-05 60.0 22.1 209 290-551 429-648 (1960)
201 PRK07764 DNA polymerase III su 95.9 0.061 1.3E-06 63.1 12.2 45 419-466 119-163 (824)
202 PRK14974 cell division protein 95.9 0.092 2E-06 55.4 12.5 52 420-471 222-273 (336)
203 PRK06835 DNA replication prote 95.9 0.059 1.3E-06 56.7 11.0 27 304-331 182-208 (329)
204 PRK11889 flhF flagellar biosyn 95.9 0.13 2.8E-06 55.3 13.5 74 401-475 302-375 (436)
205 PRK08084 DNA replication initi 95.9 0.029 6.2E-07 56.1 8.1 43 421-464 98-142 (235)
206 PRK04296 thymidine kinase; Pro 95.9 0.019 4.1E-07 55.4 6.5 36 306-353 3-38 (190)
207 PRK08727 hypothetical protein; 95.8 0.034 7.4E-07 55.5 8.5 48 419-466 92-140 (233)
208 COG0553 HepA Superfamily II DN 95.8 0.041 8.8E-07 64.8 10.2 158 289-462 337-510 (866)
209 PHA02533 17 large terminase pr 95.8 0.07 1.5E-06 59.8 11.4 149 290-462 59-210 (534)
210 smart00382 AAA ATPases associa 95.7 0.018 3.9E-07 50.3 5.4 18 305-322 2-19 (148)
211 TIGR03420 DnaA_homol_Hda DnaA 95.7 0.055 1.2E-06 53.0 9.3 19 304-322 37-55 (226)
212 PRK07952 DNA replication prote 95.7 0.15 3.4E-06 51.3 12.6 48 418-466 160-209 (244)
213 KOG0386 Chromatin remodeling c 95.7 0.039 8.6E-07 64.0 8.9 154 289-462 393-554 (1157)
214 PRK12402 replication factor C 95.6 0.091 2E-06 54.8 11.0 40 419-460 124-163 (337)
215 PF03354 Terminase_1: Phage Te 95.6 0.062 1.3E-06 59.4 10.1 71 293-371 1-80 (477)
216 PRK00149 dnaA chromosomal repl 95.6 0.098 2.1E-06 57.4 11.6 45 306-361 149-193 (450)
217 PRK14087 dnaA chromosomal repl 95.6 0.072 1.6E-06 58.5 10.3 47 419-465 205-252 (450)
218 PRK08116 hypothetical protein; 95.4 0.24 5.2E-06 50.6 12.9 25 307-332 116-140 (268)
219 TIGR00631 uvrb excinuclease AB 95.3 0.089 1.9E-06 60.4 10.5 66 290-370 9-79 (655)
220 PHA02544 44 clamp loader, smal 95.3 0.12 2.6E-06 53.6 10.4 40 420-460 100-139 (316)
221 PTZ00112 origin recognition co 95.2 0.35 7.5E-06 56.6 14.4 23 308-331 784-806 (1164)
222 PF00448 SRP54: SRP54-type pro 95.1 0.095 2.1E-06 51.0 8.5 55 419-473 82-136 (196)
223 cd01120 RecA-like_NTPases RecA 95.1 0.1 2.2E-06 47.5 8.2 45 419-463 84-137 (165)
224 PRK14088 dnaA chromosomal repl 95.0 0.17 3.6E-06 55.5 11.1 47 420-466 194-241 (440)
225 TIGR00362 DnaA chromosomal rep 95.0 0.13 2.8E-06 55.6 10.2 25 306-331 137-161 (405)
226 PRK07003 DNA polymerase III su 95.0 0.19 4.2E-06 57.9 11.7 41 268-323 13-56 (830)
227 PF00308 Bac_DnaA: Bacterial d 95.0 0.045 9.7E-07 54.2 5.9 49 418-466 95-144 (219)
228 PRK14949 DNA polymerase III su 95.0 0.19 4.2E-06 58.9 11.7 45 419-466 118-162 (944)
229 COG1419 FlhF Flagellar GTP-bin 94.9 0.55 1.2E-05 50.3 14.2 133 305-475 203-336 (407)
230 PRK14964 DNA polymerase III su 94.9 0.36 7.8E-06 53.5 13.2 42 268-324 10-54 (491)
231 PRK14952 DNA polymerase III su 94.9 0.41 8.8E-06 54.2 13.7 45 419-466 117-161 (584)
232 PRK11331 5-methylcytosine-spec 94.8 0.13 2.8E-06 56.0 9.3 29 294-322 183-211 (459)
233 COG0653 SecA Preprotein transl 94.8 0.097 2.1E-06 60.5 8.7 127 290-433 80-213 (822)
234 PRK14723 flhF flagellar biosyn 94.8 0.64 1.4E-05 54.0 15.3 70 401-474 248-317 (767)
235 PRK14958 DNA polymerase III su 94.8 0.23 5E-06 55.4 11.5 39 419-459 118-156 (509)
236 PRK12422 chromosomal replicati 94.7 0.17 3.6E-06 55.6 10.0 48 419-466 201-249 (445)
237 PLN03025 replication factor C 94.7 0.31 6.7E-06 50.9 11.6 38 420-459 99-136 (319)
238 PRK12727 flagellar biosynthesi 94.6 1 2.2E-05 50.3 15.7 56 404-464 416-471 (559)
239 PRK11054 helD DNA helicase IV; 94.6 0.23 5.1E-06 57.3 11.3 82 289-381 195-276 (684)
240 PF05621 TniB: Bacterial TniB 94.6 0.11 2.4E-06 53.6 7.7 56 306-366 62-117 (302)
241 PRK12726 flagellar biosynthesi 94.5 0.79 1.7E-05 49.1 14.1 63 402-465 268-330 (407)
242 COG1484 DnaC DNA replication p 94.5 0.25 5.5E-06 50.0 10.0 50 304-366 104-153 (254)
243 TIGR01075 uvrD DNA helicase II 94.4 0.088 1.9E-06 61.2 7.4 72 289-370 3-74 (715)
244 PHA03368 DNA packaging termina 94.4 0.28 6.2E-06 55.6 10.8 139 302-464 251-392 (738)
245 PRK06731 flhF flagellar biosyn 94.3 0.79 1.7E-05 46.9 13.3 71 403-475 138-209 (270)
246 cd01124 KaiC KaiC is a circadi 94.3 0.13 2.8E-06 48.7 7.2 48 308-368 2-49 (187)
247 PRK08769 DNA polymerase III su 94.3 0.2 4.3E-06 52.5 9.0 142 288-461 2-152 (319)
248 PRK05298 excinuclease ABC subu 94.2 0.22 4.8E-06 57.3 10.1 66 290-370 12-82 (652)
249 PRK07994 DNA polymerase III su 94.2 0.39 8.5E-06 54.9 11.8 43 419-464 118-160 (647)
250 PRK08691 DNA polymerase III su 94.2 0.38 8.2E-06 55.2 11.6 42 268-324 13-57 (709)
251 PRK09183 transposase/IS protei 94.2 0.26 5.7E-06 50.0 9.6 22 302-323 99-120 (259)
252 PRK00411 cdc6 cell division co 94.2 0.48 1E-05 50.7 12.0 16 306-321 56-71 (394)
253 KOG0991 Replication factor C, 94.2 0.13 2.8E-06 51.0 6.8 41 419-461 112-152 (333)
254 KOG1131 RNA polymerase II tran 94.2 1 2.2E-05 49.5 14.0 73 287-367 13-89 (755)
255 PRK05707 DNA polymerase III su 94.2 0.18 3.8E-06 53.1 8.4 33 291-323 4-40 (328)
256 PRK08903 DnaA regulatory inact 94.1 0.32 6.9E-06 48.0 9.6 43 420-464 90-133 (227)
257 PRK12323 DNA polymerase III su 94.0 0.21 4.6E-06 56.7 9.0 40 419-460 123-162 (700)
258 COG2805 PilT Tfp pilus assembl 94.0 0.29 6.4E-06 50.4 9.2 47 267-333 105-152 (353)
259 COG1474 CDC6 Cdc6-related prot 94.0 0.51 1.1E-05 50.5 11.5 25 306-331 43-67 (366)
260 PF06745 KaiC: KaiC; InterPro 93.9 0.27 5.8E-06 48.4 8.7 133 304-462 18-160 (226)
261 PRK12377 putative replication 93.9 0.4 8.8E-06 48.4 10.0 26 305-331 101-126 (248)
262 PRK11773 uvrD DNA-dependent he 93.9 0.11 2.5E-06 60.3 6.9 71 290-370 9-79 (721)
263 PRK13709 conjugal transfer nic 93.9 0.61 1.3E-05 58.8 13.4 64 290-361 967-1032(1747)
264 PF13173 AAA_14: AAA domain 93.9 0.51 1.1E-05 42.2 9.7 38 420-461 61-98 (128)
265 PRK14721 flhF flagellar biosyn 93.8 0.95 2.1E-05 49.2 13.3 58 418-475 267-324 (420)
266 PRK14712 conjugal transfer nic 93.7 0.44 9.5E-06 59.4 11.7 63 290-362 835-901 (1623)
267 KOG0738 AAA+-type ATPase [Post 93.7 0.14 3.1E-06 54.2 6.5 46 3-50 5-50 (491)
268 PRK10919 ATP-dependent DNA hel 93.7 0.12 2.6E-06 59.7 6.5 70 290-369 2-71 (672)
269 PRK14956 DNA polymerase III su 93.6 0.37 7.9E-06 53.1 9.8 42 268-324 15-59 (484)
270 PRK14951 DNA polymerase III su 93.6 0.72 1.6E-05 52.6 12.4 42 268-324 13-57 (618)
271 cd01122 GP4d_helicase GP4d_hel 93.5 0.21 4.5E-06 50.6 7.3 118 302-433 27-153 (271)
272 PRK04195 replication factor C 93.5 0.63 1.4E-05 51.6 11.7 44 267-322 10-56 (482)
273 PF13177 DNA_pol3_delta2: DNA 93.5 0.36 7.8E-06 45.4 8.4 42 419-462 101-142 (162)
274 PRK14086 dnaA chromosomal repl 93.5 0.25 5.4E-06 55.9 8.4 48 419-466 376-424 (617)
275 PRK00440 rfc replication facto 93.5 1.1 2.4E-05 46.1 12.8 38 420-459 102-139 (319)
276 PHA03333 putative ATPase subun 93.4 1.1 2.4E-05 51.2 13.2 150 291-463 170-333 (752)
277 PRK14965 DNA polymerase III su 93.4 0.77 1.7E-05 52.1 12.3 46 418-466 117-162 (576)
278 KOG1015 Transcription regulato 93.4 0.72 1.6E-05 53.8 11.7 144 305-462 696-859 (1567)
279 TIGR02881 spore_V_K stage V sp 93.3 0.6 1.3E-05 47.3 10.2 18 306-323 43-60 (261)
280 PRK14960 DNA polymerase III su 93.2 0.73 1.6E-05 52.6 11.5 39 419-459 117-155 (702)
281 PRK00771 signal recognition pa 93.1 0.68 1.5E-05 50.6 10.9 51 422-472 177-227 (437)
282 TIGR02928 orc1/cdc6 family rep 93.0 1.7 3.6E-05 46.0 13.5 24 306-330 41-64 (365)
283 PRK05563 DNA polymerase III su 93.0 0.78 1.7E-05 51.8 11.4 43 268-325 13-58 (559)
284 TIGR00596 rad1 DNA repair prot 92.9 0.54 1.2E-05 55.2 10.4 68 396-464 7-74 (814)
285 PRK12724 flagellar biosynthesi 92.9 1.7 3.8E-05 47.1 13.4 56 419-474 298-356 (432)
286 TIGR02785 addA_Gpos recombinat 92.9 0.33 7.1E-06 59.9 9.0 123 291-431 2-126 (1232)
287 PRK13894 conjugal transfer ATP 92.9 0.29 6.4E-06 51.3 7.4 65 281-357 125-190 (319)
288 PRK14969 DNA polymerase III su 92.9 0.95 2.1E-05 50.8 11.9 39 419-459 118-156 (527)
289 TIGR01073 pcrA ATP-dependent D 92.8 0.24 5.1E-06 57.8 7.3 72 289-370 3-74 (726)
290 PRK09111 DNA polymerase III su 92.6 0.64 1.4E-05 52.9 10.2 42 268-324 21-65 (598)
291 PF05127 Helicase_RecD: Helica 92.6 0.058 1.3E-06 51.6 1.6 124 309-463 1-124 (177)
292 TIGR03881 KaiC_arch_4 KaiC dom 92.5 1 2.2E-05 44.3 10.5 52 304-368 19-70 (229)
293 TIGR02760 TraI_TIGR conjugativ 92.5 0.8 1.7E-05 58.9 11.8 62 289-361 1018-1084(1960)
294 PHA00729 NTP-binding motif con 92.4 1 2.2E-05 44.8 10.1 76 397-472 59-138 (226)
295 PRK08939 primosomal protein Dn 92.4 1.8 3.9E-05 45.1 12.5 25 305-330 156-180 (306)
296 PF00004 AAA: ATPase family as 92.4 0.6 1.3E-05 41.0 7.9 14 308-321 1-14 (132)
297 TIGR03015 pepcterm_ATPase puta 92.4 3.1 6.8E-05 41.7 14.0 33 290-322 23-60 (269)
298 cd00984 DnaB_C DnaB helicase C 92.2 0.56 1.2E-05 46.5 8.2 111 304-433 12-136 (242)
299 TIGR01547 phage_term_2 phage t 92.2 0.4 8.7E-06 51.5 7.6 137 307-464 3-142 (396)
300 TIGR01074 rep ATP-dependent DN 92.2 0.43 9.4E-06 54.9 8.3 69 291-369 2-70 (664)
301 PRK06645 DNA polymerase III su 92.1 1.1 2.5E-05 49.9 11.1 42 268-324 18-62 (507)
302 CHL00181 cbbX CbbX; Provisiona 92.0 1.4 3E-05 45.5 11.0 19 305-323 59-77 (287)
303 PRK12900 secA preprotein trans 92.0 0.72 1.6E-05 54.6 9.7 40 514-553 581-622 (1025)
304 PRK14959 DNA polymerase III su 92.0 0.9 1.9E-05 51.7 10.2 43 268-325 13-58 (624)
305 COG1444 Predicted P-loop ATPas 92.0 1 2.2E-05 52.1 10.6 148 283-463 207-357 (758)
306 PRK13833 conjugal transfer pro 91.9 0.49 1.1E-05 49.7 7.6 57 291-357 129-186 (323)
307 PRK08451 DNA polymerase III su 91.9 1.4 3E-05 49.4 11.5 40 418-459 115-154 (535)
308 COG0470 HolB ATPase involved i 91.9 0.66 1.4E-05 47.8 8.7 45 418-465 107-151 (325)
309 TIGR03877 thermo_KaiC_1 KaiC d 91.8 0.54 1.2E-05 46.9 7.5 53 304-369 20-72 (237)
310 PRK14961 DNA polymerase III su 91.7 1.1 2.5E-05 47.6 10.3 39 419-459 118-156 (363)
311 PRK14955 DNA polymerase III su 91.7 1.8 3.9E-05 46.8 11.9 42 268-324 13-57 (397)
312 PRK14957 DNA polymerase III su 91.7 1.7 3.7E-05 48.9 12.0 40 418-459 117-156 (546)
313 TIGR00064 ftsY signal recognit 91.5 2.7 5.9E-05 43.0 12.5 55 419-473 153-213 (272)
314 PRK09112 DNA polymerase III su 91.4 2.6 5.7E-05 44.8 12.6 40 419-460 140-179 (351)
315 PRK14963 DNA polymerase III su 91.3 1 2.2E-05 50.3 9.6 41 268-323 11-54 (504)
316 PRK07133 DNA polymerase III su 91.2 1.2 2.7E-05 51.4 10.4 46 418-466 116-161 (725)
317 PRK08699 DNA polymerase III su 91.2 0.75 1.6E-05 48.4 8.1 40 419-460 112-151 (325)
318 PRK06964 DNA polymerase III su 91.1 0.61 1.3E-05 49.4 7.4 42 418-461 130-171 (342)
319 PRK14962 DNA polymerase III su 91.0 1.6 3.5E-05 48.3 10.8 42 268-324 11-55 (472)
320 KOG0298 DEAD box-containing he 90.8 0.62 1.3E-05 55.8 7.6 151 305-463 374-551 (1394)
321 KOG1133 Helicase of the DEAD s 90.8 0.37 8E-06 54.3 5.5 44 290-333 15-62 (821)
322 PRK10867 signal recognition pa 90.7 3.5 7.6E-05 45.1 12.9 17 308-324 103-119 (433)
323 TIGR00959 ffh signal recogniti 90.7 3.3 7.1E-05 45.2 12.7 18 307-324 101-118 (428)
324 PRK14954 DNA polymerase III su 90.6 2.6 5.6E-05 48.2 12.2 42 268-324 13-57 (620)
325 PRK14950 DNA polymerase III su 90.5 1.4 3E-05 50.1 10.0 42 268-324 13-57 (585)
326 TIGR01425 SRP54_euk signal rec 90.5 2.9 6.4E-05 45.6 12.0 46 420-465 182-227 (429)
327 TIGR02782 TrbB_P P-type conjug 90.5 0.91 2E-05 47.1 7.9 57 291-357 117-174 (299)
328 TIGR03499 FlhF flagellar biosy 90.4 2.4 5.2E-05 43.6 10.9 18 306-323 195-212 (282)
329 PRK11823 DNA repair protein Ra 90.4 1.4 3E-05 48.5 9.6 90 305-433 80-169 (446)
330 PF05876 Terminase_GpA: Phage 90.4 0.33 7.1E-06 54.8 4.9 126 290-433 16-147 (557)
331 KOG1001 Helicase-like transcri 90.3 1.2 2.6E-05 51.3 9.2 149 307-474 154-304 (674)
332 PRK07993 DNA polymerase III su 90.0 0.83 1.8E-05 48.2 7.2 41 418-460 106-146 (334)
333 PRK14948 DNA polymerase III su 90.0 1.5 3.2E-05 50.3 9.7 42 268-324 13-57 (620)
334 TIGR03689 pup_AAA proteasome A 89.8 1.3 2.9E-05 49.3 8.9 17 305-321 216-232 (512)
335 TIGR02880 cbbX_cfxQ probable R 89.8 2.8 6.1E-05 43.1 10.8 18 305-322 58-75 (284)
336 PRK06871 DNA polymerase III su 89.7 1.1 2.5E-05 47.0 7.9 40 419-460 106-145 (325)
337 PF03237 Terminase_6: Terminas 89.7 5 0.00011 41.6 12.8 118 309-448 1-124 (384)
338 PF05729 NACHT: NACHT domain 89.6 2.4 5.2E-05 38.6 9.3 41 423-463 84-131 (166)
339 PRK06995 flhF flagellar biosyn 89.6 7.4 0.00016 43.2 14.4 22 305-326 256-277 (484)
340 PRK07940 DNA polymerase III su 89.6 1.7 3.7E-05 47.0 9.3 45 419-466 116-160 (394)
341 PF01695 IstB_IS21: IstB-like 89.5 0.64 1.4E-05 44.4 5.4 47 302-361 44-90 (178)
342 COG2909 MalT ATP-dependent tra 89.4 1.1 2.3E-05 52.1 7.8 42 421-463 130-171 (894)
343 PRK06090 DNA polymerase III su 89.3 1.2 2.6E-05 46.7 7.7 42 418-461 106-147 (319)
344 PRK05896 DNA polymerase III su 89.2 3.7 7.9E-05 46.7 11.9 42 268-324 13-57 (605)
345 cd03115 SRP The signal recogni 89.2 6.1 0.00013 37.0 11.8 55 419-473 81-135 (173)
346 TIGR03600 phage_DnaB phage rep 89.1 2.4 5.2E-05 46.0 10.2 141 304-460 193-352 (421)
347 COG4962 CpaF Flp pilus assembl 88.9 0.66 1.4E-05 48.7 5.3 81 262-360 134-215 (355)
348 PRK06647 DNA polymerase III su 88.9 5.3 0.00011 45.3 13.0 42 268-324 13-57 (563)
349 PRK06305 DNA polymerase III su 88.9 3.5 7.6E-05 45.4 11.3 42 268-324 14-58 (451)
350 PRK06067 flagellar accessory p 88.9 2.7 5.9E-05 41.6 9.7 51 305-368 25-75 (234)
351 PRK05973 replicative DNA helic 88.6 2.6 5.6E-05 42.3 9.2 55 302-369 61-115 (237)
352 KOG0741 AAA+-type ATPase [Post 88.5 1.5 3.3E-05 48.4 7.9 138 255-459 203-376 (744)
353 COG3973 Superfamily I DNA and 88.5 2.2 4.8E-05 47.8 9.2 93 272-370 186-285 (747)
354 PRK08533 flagellar accessory p 88.5 1.3 2.8E-05 44.2 7.0 53 303-368 22-74 (230)
355 cd01126 TraG_VirD4 The TraG/Tr 88.5 0.35 7.6E-06 51.8 3.2 48 307-368 1-48 (384)
356 KOG0742 AAA+-type ATPase [Post 88.3 1.4 3.1E-05 47.1 7.3 16 306-321 385-400 (630)
357 PRK13342 recombination factor 88.1 2.8 6E-05 45.5 9.8 17 306-322 37-53 (413)
358 PRK13900 type IV secretion sys 88.1 4.5 9.8E-05 42.7 11.1 44 301-357 156-199 (332)
359 TIGR00767 rho transcription te 87.9 1.5 3.2E-05 47.3 7.3 19 303-321 166-184 (415)
360 PRK13851 type IV secretion sys 87.9 0.72 1.6E-05 48.9 4.9 46 300-358 157-202 (344)
361 PF02534 T4SS-DNA_transf: Type 87.8 0.46 1E-05 52.2 3.6 49 306-368 45-93 (469)
362 TIGR01650 PD_CobS cobaltochela 87.7 3.6 7.8E-05 43.3 9.9 21 301-321 60-80 (327)
363 PRK14970 DNA polymerase III su 87.5 3.1 6.7E-05 44.2 9.6 41 268-323 14-57 (367)
364 PF03969 AFG1_ATPase: AFG1-lik 87.5 5.3 0.00011 42.7 11.3 46 419-466 126-172 (362)
365 PRK07471 DNA polymerase III su 87.5 2.9 6.4E-05 44.7 9.3 42 418-461 139-180 (365)
366 TIGR00678 holB DNA polymerase 87.4 4 8.6E-05 38.9 9.5 40 418-459 94-133 (188)
367 PHA03372 DNA packaging termina 87.3 5.9 0.00013 44.8 11.6 130 303-462 200-337 (668)
368 PRK06904 replicative DNA helic 87.1 5.7 0.00012 44.0 11.6 141 305-460 221-382 (472)
369 PHA00012 I assembly protein 87.1 4.7 0.0001 42.3 10.2 24 308-331 4-27 (361)
370 PRK10416 signal recognition pa 87.1 10 0.00022 39.8 12.9 55 419-473 195-255 (318)
371 TIGR02525 plasmid_TraJ plasmid 86.8 1.4 3.1E-05 47.2 6.5 45 268-331 130-174 (372)
372 PF01637 Arch_ATPase: Archaeal 86.6 1.7 3.6E-05 42.0 6.5 56 403-462 105-165 (234)
373 COG2804 PulE Type II secretory 86.4 1 2.2E-05 49.6 5.1 39 292-331 243-283 (500)
374 PRK10689 transcription-repair 86.3 2.9 6.3E-05 51.2 9.5 79 345-432 809-891 (1147)
375 TIGR03878 thermo_KaiC_2 KaiC d 86.2 3.8 8.2E-05 41.5 9.0 37 304-352 35-71 (259)
376 PRK14953 DNA polymerase III su 86.1 7 0.00015 43.5 11.7 42 268-324 13-57 (486)
377 PRK13341 recombination factor 85.9 3.2 6.9E-05 48.4 9.2 39 420-464 109-147 (725)
378 TIGR00665 DnaB replicative DNA 85.9 4.4 9.5E-05 44.2 9.9 139 305-460 195-353 (434)
379 cd03239 ABC_SMC_head The struc 85.8 1.6 3.4E-05 41.7 5.7 43 418-461 114-157 (178)
380 PF03796 DnaB_C: DnaB-like hel 85.7 1.3 2.7E-05 44.7 5.2 138 306-461 20-179 (259)
381 PRK07004 replicative DNA helic 85.6 3.7 8.1E-05 45.3 9.2 64 397-460 296-372 (460)
382 PRK05748 replicative DNA helic 85.3 5.8 0.00013 43.5 10.5 141 305-461 203-364 (448)
383 TIGR02655 circ_KaiC circadian 85.2 4.1 8.9E-05 45.2 9.4 53 304-369 262-314 (484)
384 cd00079 HELICc Helicase superf 85.2 2.8 6.2E-05 36.4 6.7 37 515-551 12-50 (131)
385 TIGR00708 cobA cob(I)alamin ad 85.2 13 0.00028 35.5 11.4 50 418-468 95-146 (173)
386 TIGR00602 rad24 checkpoint pro 85.2 4.3 9.4E-05 46.5 9.6 48 268-323 81-128 (637)
387 TIGR03880 KaiC_arch_3 KaiC dom 85.1 3.7 7.9E-05 40.3 8.1 52 305-369 16-67 (224)
388 TIGR00580 mfd transcription-re 85.1 3.7 7.9E-05 49.2 9.3 80 344-432 659-742 (926)
389 PRK04328 hypothetical protein; 85.1 5.7 0.00012 40.0 9.6 53 304-369 22-74 (249)
390 PRK08506 replicative DNA helic 85.0 4.3 9.3E-05 45.0 9.3 140 305-460 192-350 (472)
391 PRK13897 type IV secretion sys 84.9 0.77 1.7E-05 52.2 3.5 49 306-368 159-207 (606)
392 TIGR00635 ruvB Holliday juncti 84.9 1.9 4.1E-05 44.4 6.2 16 306-321 31-46 (305)
393 KOG0344 ATP-dependent RNA heli 84.8 18 0.00038 40.6 13.6 98 314-431 366-467 (593)
394 COG2256 MGS1 ATPase related to 84.7 4.4 9.5E-05 43.5 8.7 18 306-323 49-66 (436)
395 PRK05986 cob(I)alamin adenolsy 84.4 10 0.00022 36.9 10.4 50 418-468 113-164 (191)
396 PRK13764 ATPase; Provisional 84.4 1.8 3.8E-05 49.2 6.0 45 268-331 238-282 (602)
397 TIGR02397 dnaX_nterm DNA polym 84.3 6.5 0.00014 41.2 10.1 40 268-322 11-53 (355)
398 COG0552 FtsY Signal recognitio 84.3 23 0.00051 37.2 13.7 126 308-469 142-276 (340)
399 COG4626 Phage terminase-like p 84.3 6.7 0.00014 43.8 10.2 145 290-460 61-223 (546)
400 TIGR00763 lon ATP-dependent pr 84.2 4.2 9E-05 47.9 9.3 19 304-322 346-364 (775)
401 PRK11034 clpA ATP-dependent Cl 84.2 4.6 0.0001 47.3 9.5 18 305-322 207-224 (758)
402 COG0630 VirB11 Type IV secreto 83.9 3.4 7.4E-05 43.2 7.6 75 265-357 107-182 (312)
403 TIGR01243 CDC48 AAA family ATP 83.9 4.6 0.0001 47.2 9.5 52 267-321 174-228 (733)
404 cd00561 CobA_CobO_BtuR ATP:cor 83.5 13 0.00027 35.1 10.4 51 417-468 92-144 (159)
405 PRK08840 replicative DNA helic 83.5 13 0.00027 41.2 12.1 58 403-460 312-377 (464)
406 PRK08760 replicative DNA helic 83.3 5.5 0.00012 44.2 9.3 137 306-460 230-387 (476)
407 PF05496 RuvB_N: Holliday junc 83.3 2.9 6.2E-05 41.7 6.3 42 268-321 21-66 (233)
408 PRK14971 DNA polymerase III su 83.1 9.6 0.00021 43.7 11.3 42 418-462 119-160 (614)
409 KOG2228 Origin recognition com 82.9 27 0.00057 37.0 13.2 76 405-481 122-202 (408)
410 PF12846 AAA_10: AAA-like doma 82.9 1.4 3.1E-05 44.5 4.2 42 306-359 2-43 (304)
411 PRK08006 replicative DNA helic 82.9 14 0.00029 41.0 12.1 64 397-460 308-384 (471)
412 KOG0739 AAA+-type ATPase [Post 82.8 11 0.00024 39.1 10.3 61 421-481 226-297 (439)
413 PRK09376 rho transcription ter 82.6 7.8 0.00017 41.9 9.6 30 292-321 153-185 (416)
414 cd01121 Sms Sms (bacterial rad 82.6 6.3 0.00014 42.2 9.1 90 305-433 82-171 (372)
415 KOG0732 AAA+-type ATPase conta 82.4 2.3 5E-05 50.7 6.1 52 267-321 261-315 (1080)
416 PF05707 Zot: Zonular occluden 82.3 1.3 2.8E-05 42.8 3.4 54 420-474 79-137 (193)
417 PRK10436 hypothetical protein; 82.2 1.6 3.4E-05 48.2 4.5 47 268-330 195-242 (462)
418 KOG1513 Nuclear helicase MOP-3 82.1 2.5 5.3E-05 48.7 5.8 153 289-462 263-454 (1300)
419 TIGR02524 dot_icm_DotB Dot/Icm 81.8 1.3 2.8E-05 47.2 3.5 26 304-330 133-158 (358)
420 TIGR02538 type_IV_pilB type IV 81.8 1.8 3.9E-05 49.0 4.8 24 306-330 317-340 (564)
421 PRK13850 type IV secretion sys 81.8 1.2 2.5E-05 51.4 3.4 49 306-368 140-188 (670)
422 TIGR02237 recomb_radB DNA repa 81.7 7.6 0.00016 37.5 8.7 38 305-354 12-49 (209)
423 cd01130 VirB11-like_ATPase Typ 81.6 1.8 3.9E-05 41.4 4.1 33 290-322 9-42 (186)
424 cd01125 repA Hexameric Replica 81.2 8.5 0.00018 38.2 9.0 58 308-365 4-64 (239)
425 PF02572 CobA_CobO_BtuR: ATP:c 80.9 24 0.00053 33.6 11.4 136 308-468 6-145 (172)
426 COG1219 ClpX ATP-dependent pro 80.9 1 2.2E-05 46.9 2.1 18 306-323 98-115 (408)
427 TIGR01243 CDC48 AAA family ATP 80.8 5.1 0.00011 46.9 8.3 52 268-322 450-504 (733)
428 PRK08058 DNA polymerase III su 80.7 8.7 0.00019 40.4 9.3 41 418-460 108-148 (329)
429 PRK05636 replicative DNA helic 80.5 7.3 0.00016 43.5 9.0 42 419-460 374-423 (505)
430 KOG1016 Predicted DNA helicase 80.5 32 0.00069 40.1 13.6 181 275-469 247-480 (1387)
431 PRK07399 DNA polymerase III su 80.2 13 0.00029 38.8 10.3 52 406-461 111-162 (314)
432 COG2109 BtuR ATP:corrinoid ade 80.0 10 0.00022 36.7 8.5 49 420-469 122-172 (198)
433 PRK04841 transcriptional regul 80.0 19 0.00042 42.7 13.0 41 422-463 123-163 (903)
434 COG4185 Uncharacterized protei 79.9 5.3 0.00011 37.7 6.3 20 308-327 5-24 (187)
435 COG1132 MdlB ABC-type multidru 79.8 0.92 2E-05 51.2 1.7 41 418-459 481-521 (567)
436 TIGR02533 type_II_gspE general 79.7 2.5 5.4E-05 47.0 5.0 35 295-330 230-266 (486)
437 TIGR01420 pilT_fam pilus retra 79.6 4.7 0.0001 42.7 6.8 19 304-322 121-139 (343)
438 KOG0744 AAA+-type ATPase [Post 79.6 7.8 0.00017 40.6 8.0 68 306-382 178-257 (423)
439 PF00437 T2SE: Type II/IV secr 79.5 1.8 3.9E-05 43.8 3.6 44 302-357 124-167 (270)
440 cd01129 PulE-GspE PulE/GspE Th 79.4 2.2 4.7E-05 43.5 4.1 35 295-330 68-104 (264)
441 PF06733 DEAD_2: DEAD_2; Inte 79.4 1.7 3.7E-05 41.0 3.1 45 389-433 112-158 (174)
442 COG1435 Tdk Thymidine kinase [ 79.1 8.2 0.00018 37.5 7.6 48 398-448 61-108 (201)
443 TIGR00416 sms DNA repair prote 78.7 11 0.00023 41.7 9.4 90 305-433 94-183 (454)
444 CHL00176 ftsH cell division pr 78.6 9.6 0.00021 43.9 9.3 18 305-322 216-233 (638)
445 TIGR03819 heli_sec_ATPase heli 78.5 4.5 9.7E-05 42.8 6.3 63 280-357 154-217 (340)
446 COG3267 ExeA Type II secretory 78.5 9.8 0.00021 38.6 8.2 52 268-323 14-69 (269)
447 COG1197 Mfd Transcription-repa 78.3 31 0.00067 41.9 13.5 123 295-433 732-886 (1139)
448 PRK13876 conjugal transfer cou 78.0 1.9 4.1E-05 49.7 3.4 48 306-367 145-192 (663)
449 PRK04537 ATP-dependent RNA hel 77.7 16 0.00034 41.5 10.8 75 344-429 256-334 (572)
450 PRK13880 conjugal transfer cou 77.7 2.4 5.2E-05 48.7 4.2 46 306-365 176-221 (636)
451 cd01128 rho_factor Transcripti 77.7 10 0.00022 38.3 8.3 19 302-320 13-31 (249)
452 TIGR02639 ClpA ATP-dependent C 77.6 14 0.0003 43.3 10.5 18 306-323 204-221 (731)
453 PRK06321 replicative DNA helic 77.6 16 0.00034 40.6 10.4 63 397-460 309-387 (472)
454 TIGR02640 gas_vesic_GvpN gas v 77.5 2 4.4E-05 43.5 3.2 28 296-323 12-39 (262)
455 PRK05564 DNA polymerase III su 77.4 19 0.0004 37.4 10.5 40 418-459 91-130 (313)
456 PRK13822 conjugal transfer cou 77.4 2.6 5.6E-05 48.4 4.3 49 306-368 225-273 (641)
457 PF01443 Viral_helicase1: Vira 76.9 2.4 5.2E-05 41.5 3.5 14 308-321 1-14 (234)
458 PRK09165 replicative DNA helic 76.8 18 0.00039 40.3 10.7 123 306-433 218-354 (497)
459 TIGR00631 uvrb excinuclease AB 76.7 59 0.0013 37.7 15.1 119 344-473 441-564 (655)
460 KOG0737 AAA+-type ATPase [Post 76.5 15 0.00032 39.1 9.2 52 268-322 89-144 (386)
461 PF05505 Ebola_NP: Ebola nucle 76.3 1E+02 0.0022 34.2 15.4 27 62-88 445-471 (717)
462 KOG0990 Replication factor C, 76.1 4.9 0.00011 41.9 5.4 39 420-460 131-169 (360)
463 TIGR02868 CydC thiol reductant 76.0 5.9 0.00013 44.2 6.7 20 302-321 358-377 (529)
464 TIGR03346 chaperone_ClpB ATP-d 76.0 21 0.00046 42.6 11.6 18 306-323 195-212 (852)
465 PRK10865 protein disaggregatio 75.6 6.1 0.00013 47.1 7.0 18 306-323 200-217 (857)
466 PRK05595 replicative DNA helic 75.4 18 0.00038 39.7 10.0 42 419-460 310-359 (444)
467 COG2255 RuvB Holliday junction 75.3 21 0.00045 36.9 9.6 26 404-433 91-116 (332)
468 PRK07773 replicative DNA helic 75.0 11 0.00024 45.1 9.0 111 306-433 218-340 (886)
469 TIGR02767 TraG-Ti Ti-type conj 74.8 2.4 5.3E-05 48.4 3.3 49 306-368 212-260 (623)
470 TIGR03345 VI_ClpV1 type VI sec 74.7 8.4 0.00018 45.9 7.8 17 306-322 209-225 (852)
471 TIGR02012 tigrfam_recA protein 74.7 10 0.00022 39.9 7.5 43 304-358 54-96 (321)
472 PHA00350 putative assembly pro 74.7 15 0.00033 39.7 9.0 17 308-324 4-20 (399)
473 cd01127 TrwB Bacterial conjuga 74.5 2.6 5.6E-05 45.7 3.2 32 299-331 36-67 (410)
474 KOG0331 ATP-dependent RNA heli 74.5 9.6 0.00021 42.4 7.6 73 343-426 339-415 (519)
475 PHA02542 41 41 helicase; Provi 74.5 12 0.00025 41.6 8.3 59 403-461 283-353 (473)
476 KOG0058 Peptide exporter, ABC 74.3 4.6 9.9E-05 46.3 5.1 41 418-460 620-660 (716)
477 PRK11192 ATP-dependent RNA hel 74.0 19 0.00041 39.1 9.9 71 345-426 245-319 (434)
478 PRK04837 ATP-dependent RNA hel 74.0 20 0.00044 38.8 10.1 73 345-428 255-331 (423)
479 PF12775 AAA_7: P-loop contain 73.9 2.1 4.6E-05 43.8 2.2 20 302-321 30-49 (272)
480 PF10412 TrwB_AAD_bind: Type I 73.9 3.2 6.8E-05 44.7 3.7 48 303-362 13-60 (386)
481 cd00983 recA RecA is a bacter 73.7 5.8 0.00012 41.7 5.4 42 305-358 55-96 (325)
482 PRK10263 DNA translocase FtsK; 73.1 12 0.00027 45.8 8.6 25 307-331 1012-1036(1355)
483 PRK09354 recA recombinase A; P 72.9 7.4 0.00016 41.3 6.1 43 305-359 60-102 (349)
484 PRK12608 transcription termina 72.3 22 0.00047 38.2 9.4 29 293-321 118-149 (380)
485 PRK09087 hypothetical protein; 71.9 13 0.00027 37.0 7.2 17 305-321 44-60 (226)
486 COG5008 PilU Tfp pilus assembl 71.8 4.1 8.9E-05 41.5 3.6 37 267-322 107-144 (375)
487 KOG1514 Origin recognition com 71.3 29 0.00062 40.0 10.3 42 419-462 507-551 (767)
488 CHL00095 clpC Clp protease ATP 71.2 6.1 0.00013 46.9 5.5 98 308-459 542-659 (821)
489 COG0210 UvrD Superfamily I DNA 70.9 7.9 0.00017 44.5 6.3 71 290-370 2-72 (655)
490 TIGR03743 SXT_TraD conjugative 70.7 7.9 0.00017 44.5 6.1 53 305-369 176-230 (634)
491 TIGR00643 recG ATP-dependent D 70.7 30 0.00065 39.8 10.8 80 344-432 447-538 (630)
492 PF01078 Mg_chelatase: Magnesi 70.7 3.5 7.6E-05 40.5 2.8 20 303-322 20-39 (206)
493 KOG1806 DEAD box containing he 70.4 7.7 0.00017 46.0 5.8 72 287-368 735-806 (1320)
494 KOG2543 Origin recognition com 70.4 28 0.0006 37.4 9.5 47 419-466 114-162 (438)
495 COG0467 RAD55 RecA-superfamily 70.4 5.1 0.00011 40.4 4.1 53 304-369 22-74 (260)
496 PRK09435 membrane ATPase/prote 69.9 69 0.0015 33.8 12.5 71 397-468 170-250 (332)
497 cd01393 recA_like RecA is a b 69.8 15 0.00031 35.9 7.1 22 305-326 19-40 (226)
498 PRK10590 ATP-dependent RNA hel 69.3 32 0.00068 37.8 10.3 71 345-426 245-319 (456)
499 TIGR03345 VI_ClpV1 type VI sec 69.2 14 0.00031 44.0 8.0 15 308-322 599-613 (852)
500 cd03114 ArgK-like The function 69.2 34 0.00073 31.5 9.0 16 308-323 2-17 (148)
No 1
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-46 Score=379.17 Aligned_cols=265 Identities=29% Similarity=0.411 Sum_probs=249.8
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCC
Q 008605 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGS 345 (560)
Q Consensus 266 ~~~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~ 345 (560)
+..+|.+|++++++++++...||..||+||+++||.++.|+|||+.|+||||||.+|++|++++++++ +..
T Consensus 59 ~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~---------p~~ 129 (476)
T KOG0330|consen 59 SFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQE---------PKL 129 (476)
T ss_pred hhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcC---------CCC
Confidence 45799999999999999999999999999999999999999999999999999999999999999875 345
Q ss_pred CEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHH-hccccCCCccEE
Q 008605 346 PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIK-EGILQLINLRCA 424 (560)
Q Consensus 346 ~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~-~~~~~l~~l~~L 424 (560)
++++|++||||||.||.+++..++. +.++++.++.||.++..|...+.+.+||||+|||+|.+++. .+.+.+..+++|
T Consensus 130 ~~~lVLtPtRELA~QI~e~fe~Lg~-~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~L 208 (476)
T KOG0330|consen 130 FFALVLTPTRELAQQIAEQFEALGS-GIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFL 208 (476)
T ss_pred ceEEEecCcHHHHHHHHHHHHHhcc-ccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHH
Confidence 8999999999999999999999987 48999999999999999999999999999999999999998 478899999999
Q ss_pred EEccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCCC
Q 008605 425 ILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504 (560)
Q Consensus 425 ViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~ 504 (560)
|+||||+++ |+.|...+..|++.+|..+|+++||||||..+.......+.++..+..+..+.+.++++|.|+.++..
T Consensus 209 VlDEADrlL-d~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k-- 285 (476)
T KOG0330|consen 209 VLDEADRLL-DMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGK-- 285 (476)
T ss_pred hhchHHhhh-hhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEecccc--
Confidence 999999999 89999999999999999999999999999999988888889999999999999999999999999874
Q ss_pred CCCChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhhc
Q 008605 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFFS 553 (560)
Q Consensus 505 ~~~~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l~ 553 (560)
+|..+|..++++..+..+|||||+..+++.++-.|+.++
T Consensus 286 ----------~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg 324 (476)
T KOG0330|consen 286 ----------DKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLG 324 (476)
T ss_pred ----------ccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhcC
Confidence 677999999999888999999999999999999998764
No 2
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.6e-45 Score=388.93 Aligned_cols=271 Identities=33% Similarity=0.495 Sum_probs=239.0
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCC
Q 008605 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGS 345 (560)
Q Consensus 266 ~~~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~ 345 (560)
+...|++++|+++++.+|+..||..|||||.++||.++.|+|++.+|.|||||||+|++|++.++.... .......+
T Consensus 89 ~~~~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~---~~~~~~~~ 165 (519)
T KOG0331|consen 89 SSAAFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQ---GKLSRGDG 165 (519)
T ss_pred cchhhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhcc---ccccCCCC
Confidence 344899999999999999999999999999999999999999999999999999999999999998631 12245679
Q ss_pred CEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEE
Q 008605 346 PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAI 425 (560)
Q Consensus 346 ~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LV 425 (560)
|++|||+||||||.|+...+.+++.. ..+++.+++||.+...|.+.+.++++|+|+||++|.++++.+.+.|++|.|+|
T Consensus 166 P~vLVL~PTRELA~QV~~~~~~~~~~-~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylV 244 (519)
T KOG0331|consen 166 PIVLVLAPTRELAVQVQAEAREFGKS-LRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLV 244 (519)
T ss_pred CeEEEEcCcHHHHHHHHHHHHHHcCC-CCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEE
Confidence 99999999999999999999999874 56889999999999999999999999999999999999999999999999999
Q ss_pred EccccccCCCCChHHHHHHHHhhC-CCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCC--ccccCCCceeEEEEcCCC
Q 008605 426 LDEVDILFNDEDFEVALQSLISSS-PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPG--MHRISPGLEEFLVDCSGD 502 (560)
Q Consensus 426 iDEah~ll~d~~f~~~l~~Il~~~-~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~--~~~~~~~i~~~~v~~~~~ 502 (560)
+||||+|+ |++|+++++.|+..+ +..+|++++|||||..+..+...++.++..+..-. ......++.|....|..
T Consensus 245 LDEADrMl-dmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~- 322 (519)
T KOG0331|consen 245 LDEADRML-DMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDE- 322 (519)
T ss_pred eccHHhhh-ccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCH-
Confidence 99999999 999999999999999 55669999999999999998888888765554332 33566778887777763
Q ss_pred CCCCCChhhhhhhHHHHHHHHHHhC---CCCcEEEEeCchHHHHHHHHHHHhhc
Q 008605 503 QESDKTPETAFLNKKSALLQLIEKS---PVSKTIVFCNKVCFSYKCNNLFGFFS 553 (560)
Q Consensus 503 ~~~~~~~~~~~~~K~~~L~~lL~~~---~~~ktIIFcnS~~~a~~la~~Lk~l~ 553 (560)
..|...|..+|+.. ..+++||||+|++.|++|+..|++.+
T Consensus 323 -----------~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~ 365 (519)
T KOG0331|consen 323 -----------TAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKG 365 (519)
T ss_pred -----------HHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcC
Confidence 36677777777664 46799999999999999999998853
No 3
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-42 Score=382.74 Aligned_cols=267 Identities=30% Similarity=0.442 Sum_probs=241.2
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCE
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 347 (560)
.+|++|+|++.++++|.++||..|||||.++||.++.|+|+++.|+||||||++|++|+++.+.... .....+
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~------~~~~~~- 101 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSV------ERKYVS- 101 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhccc------ccCCCc-
Confidence 5799999999999999999999999999999999999999999999999999999999999976320 111112
Q ss_pred EEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEc
Q 008605 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427 (560)
Q Consensus 348 aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViD 427 (560)
+||++||||||.|+++.++.+..+...+++.+++||.....+...+..++||||+||+||++++.++.+.+..++++|+|
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlD 181 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLD 181 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEec
Confidence 99999999999999999999988533789999999999999999998899999999999999999999999999999999
Q ss_pred cccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccc--cCCCceeEEEEcCCCCCC
Q 008605 428 EVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHR--ISPGLEEFLVDCSGDQES 505 (560)
Q Consensus 428 Eah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~--~~~~i~~~~v~~~~~~~~ 505 (560)
|||+|+ +++|.+.+..|+..++.++|+++||||+|..+..+...++.++..+....... +...+.|+++.+...
T Consensus 182 EADrmL-d~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~--- 257 (513)
T COG0513 182 EADRML-DMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESE--- 257 (513)
T ss_pred cHhhhh-cCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCH---
Confidence 999999 89999999999999999999999999999999998889998887666553333 788999999999863
Q ss_pred CCChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhhc
Q 008605 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFFS 553 (560)
Q Consensus 506 ~~~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l~ 553 (560)
.+|...|..++......++||||+|+..|+.++..|+..+
T Consensus 258 --------~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g 297 (513)
T COG0513 258 --------EEKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRG 297 (513)
T ss_pred --------HHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCC
Confidence 1499999999998887899999999999999999998876
No 4
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.9e-42 Score=358.07 Aligned_cols=268 Identities=25% Similarity=0.396 Sum_probs=241.2
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCE
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 347 (560)
.+|.+|+|+-.+++++..+||..|||||..+||..+.|+|++.||.||||||.+|++|+|.+++-.+ ......+
T Consensus 181 ~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrP------k~~~~TR 254 (691)
T KOG0338|consen 181 ESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRP------KKVAATR 254 (691)
T ss_pred hhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCc------ccCccee
Confidence 5899999999999999999999999999999999999999999999999999999999999998643 2245668
Q ss_pred EEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHh-ccccCCCccEEEE
Q 008605 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE-GILQLINLRCAIL 426 (560)
Q Consensus 348 aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~-~~~~l~~l~~LVi 426 (560)
+|||+|||||+.|++.+.++++++ .++.++++.||.+...|...|+.++||+|+|||+|.+++++ ..+.++++.+||+
T Consensus 255 VLVL~PTRELaiQv~sV~~qlaqF-t~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvl 333 (691)
T KOG0338|consen 255 VLVLVPTRELAIQVHSVTKQLAQF-TDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVL 333 (691)
T ss_pred EEEEeccHHHHHHHHHHHHHHHhh-ccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEe
Confidence 999999999999999999999997 67999999999999999999999999999999999999987 5678999999999
Q ss_pred ccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCCCCC
Q 008605 427 DEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506 (560)
Q Consensus 427 DEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~~~ 506 (560)
||||+|+ +.+|..+|..|++.+++++|+++|||||...+..++.-.+..++.++.+......+.+.|.|+.+...-.
T Consensus 334 DEADRML-eegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re-- 410 (691)
T KOG0338|consen 334 DEADRML-EEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKRE-- 410 (691)
T ss_pred chHHHHH-HHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccc--
Confidence 9999999 8899999999999999999999999999999999888889999998888878888889888887764321
Q ss_pred CChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhh
Q 008605 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFF 552 (560)
Q Consensus 507 ~~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l 552 (560)
.++-..|..++...-..++|||+.|++.|+.+.-.|--+
T Consensus 411 -------~dRea~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLl 449 (691)
T KOG0338|consen 411 -------GDREAMLASLITRTFQDRTIVFVRTKKQAHRLRILLGLL 449 (691)
T ss_pred -------cccHHHHHHHHHHhcccceEEEEehHHHHHHHHHHHHHh
Confidence 245577777777655689999999999999987766433
No 5
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.6e-42 Score=333.83 Aligned_cols=267 Identities=25% Similarity=0.385 Sum_probs=248.2
Q ss_pred cccccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCC
Q 008605 265 FSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSG 344 (560)
Q Consensus 265 ~~~~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~ 344 (560)
..+.+|++|||.++++++++..||++|+.+|++|+++++.|+|+++.|+.|+|||.+|.+.+++.+.-. .+
T Consensus 24 ~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~---------~r 94 (400)
T KOG0328|consen 24 KVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDIS---------VR 94 (400)
T ss_pred ccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccc---------cc
Confidence 345799999999999999999999999999999999999999999999999999999999998876432 34
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEE
Q 008605 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCA 424 (560)
Q Consensus 345 ~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~L 424 (560)
..+++|++||||||.|+.+.+..++.+ .++.+..+.||.+..+.++.+..|++++.+||++++++++++.+....+++|
T Consensus 95 ~tQ~lilsPTRELa~Qi~~vi~alg~~-mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkml 173 (400)
T KOG0328|consen 95 ETQALILSPTRELAVQIQKVILALGDY-MNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKML 173 (400)
T ss_pred eeeEEEecChHHHHHHHHHHHHHhccc-ccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEE
Confidence 568999999999999999999999886 7899999999999999999999999999999999999999999999999999
Q ss_pred EEccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCCC
Q 008605 425 ILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504 (560)
Q Consensus 425 ViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~ 504 (560)
|+||||.|+ +.+|..++-.|.+++|+..|++++|||+|.++.+...+++.+++.+.....+.+...|+++|+.+..++
T Consensus 174 VLDEaDemL-~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~Ee- 251 (400)
T KOG0328|consen 174 VLDEADEML-NKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEE- 251 (400)
T ss_pred EeccHHHHH-HhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhh-
Confidence 999999999 789999999999999999999999999999999999999999998888877888888999999988752
Q ss_pred CCCChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhhc
Q 008605 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFFS 553 (560)
Q Consensus 505 ~~~~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l~ 553 (560)
.|.+.|..++......+++|||||+..+.++.+.++...
T Consensus 252 ----------wKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~n 290 (400)
T KOG0328|consen 252 ----------WKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREAN 290 (400)
T ss_pred ----------hhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhhC
Confidence 689999999999888999999999999999999998754
No 6
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.5e-40 Score=368.50 Aligned_cols=267 Identities=27% Similarity=0.423 Sum_probs=228.8
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCE
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 347 (560)
.+|++++|++.++++|.++||.+||++|.++||.+++|+|+|++||||||||++|++|++.++..... .....+|+
T Consensus 130 ~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~----~~~~~gp~ 205 (545)
T PTZ00110 130 VSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPL----LRYGDGPI 205 (545)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhccc----ccCCCCcE
Confidence 68999999999999999999999999999999999999999999999999999999999988765321 12245789
Q ss_pred EEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEc
Q 008605 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427 (560)
Q Consensus 348 aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViD 427 (560)
+|||+||||||.|+++.++++... ..+++.+++||.....+...+..+++|+|+||++|.+++..+...+.++++||||
T Consensus 206 ~LIL~PTreLa~Qi~~~~~~~~~~-~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViD 284 (545)
T PTZ00110 206 VLVLAPTRELAEQIREQCNKFGAS-SKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLD 284 (545)
T ss_pred EEEECChHHHHHHHHHHHHHHhcc-cCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEee
Confidence 999999999999999999999764 6789999999999988888899999999999999999999888889999999999
Q ss_pred cccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCC-CeEEeCCCc-cccCCCceeEEEEcCCCCCC
Q 008605 428 EVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGM-HRISPGLEEFLVDCSGDQES 505 (560)
Q Consensus 428 Eah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~-~~~i~~~~~-~~~~~~i~~~~v~~~~~~~~ 505 (560)
|||+|+ +++|...++.|+..+++.+|+++||||+|.++..+...++.. +..+..... .....++.+.+..+..
T Consensus 285 EAd~ml-d~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~---- 359 (545)
T PTZ00110 285 EADRML-DMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEE---- 359 (545)
T ss_pred hHHhhh-hcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEec----
Confidence 999999 899999999999999999999999999999988877766643 433332222 2344567777666543
Q ss_pred CCChhhhhhhHHHHHHHHHHhC--CCCcEEEEeCchHHHHHHHHHHHhh
Q 008605 506 DKTPETAFLNKKSALLQLIEKS--PVSKTIVFCNKVCFSYKCNNLFGFF 552 (560)
Q Consensus 506 ~~~~~~~~~~K~~~L~~lL~~~--~~~ktIIFcnS~~~a~~la~~Lk~l 552 (560)
.+|...|.+++... ...++||||+++++|+.++..|+..
T Consensus 360 --------~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~ 400 (545)
T PTZ00110 360 --------HEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLD 400 (545)
T ss_pred --------hhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHc
Confidence 25677777777664 4679999999999999999999753
No 7
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=4.7e-41 Score=350.36 Aligned_cols=308 Identities=25% Similarity=0.340 Sum_probs=274.6
Q ss_pred cccCCCCCCCCcCCCCCccCCCcccCcccccCcCCccccccCCCCCccccccccccCCCHHHHHHHHHCCCCCChHHHHH
Q 008605 218 NSRSNKHEKSGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAM 297 (560)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~ 297 (560)
.+|+.+...... .++|+......++++.+...|.|. .+|++.+|+.++++.+...||..|+|||.+
T Consensus 209 rhW~~k~l~Em~--~rdwri~redynis~kg~~lpnpl------------rnwEE~~~P~e~l~~I~~~~y~eptpIqR~ 274 (673)
T KOG0333|consen 209 RHWSEKVLAEMT--ERDWRIFREDYNISIKGGRLPNPL------------RNWEESGFPLELLSVIKKPGYKEPTPIQRQ 274 (673)
T ss_pred cchhhhhHHhcC--CccceeeecceeeeecCCCCCccc------------cChhhcCCCHHHHHHHHhcCCCCCchHHHh
Confidence 566666655444 678998888888888888888765 789999999999999999999999999999
Q ss_pred HHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceE
Q 008605 298 AFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRS 377 (560)
Q Consensus 298 aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v 377 (560)
|||..++.+|+|.+|.||||||++|++|++..+..-+.....-....+|+++|++|||+|++||.++-.+++.. .++++
T Consensus 275 aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~-lg~r~ 353 (673)
T KOG0333|consen 275 AIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKP-LGIRT 353 (673)
T ss_pred hccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhccc-ccceE
Confidence 99999999999999999999999999999988865321000112356999999999999999999999999875 67999
Q ss_pred EEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCCChHHHHHHHHhhCCC------
Q 008605 378 MVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPV------ 451 (560)
Q Consensus 378 ~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~------ 451 (560)
+.+.||....++--.+..+|+|+|+||++|.+.+.+..+.++++.+||+||||+|+ |++|++++..++.++|.
T Consensus 354 vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmi-DmgfE~dv~~iL~~mPssn~k~~ 432 (673)
T KOG0333|consen 354 VSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMI-DMGFEPDVQKILEQMPSSNAKPD 432 (673)
T ss_pred EEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhh-cccccHHHHHHHHhCCccccCCC
Confidence 99999999999988888999999999999999999999999999999999999999 99999999999999872
Q ss_pred -------------------CCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCCCCCCChhhh
Q 008605 452 -------------------TAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETA 512 (560)
Q Consensus 452 -------------------~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~ 512 (560)
-+|+++||||+|+.+...+..++..++++.....+...+.++|.++.+..+
T Consensus 433 tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed---------- 502 (673)
T KOG0333|consen 433 TDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSED---------- 502 (673)
T ss_pred ccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecch----------
Confidence 179999999999999999999999999999888899999999999988874
Q ss_pred hhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhhc
Q 008605 513 FLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFFS 553 (560)
Q Consensus 513 ~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l~ 553 (560)
.|...|.++|......++|||+|+++.|+.||+.|..++
T Consensus 503 --~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g 541 (673)
T KOG0333|consen 503 --EKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAG 541 (673)
T ss_pred --HHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhcc
Confidence 678999999998877899999999999999999999876
No 8
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=4.5e-40 Score=355.00 Aligned_cols=271 Identities=25% Similarity=0.355 Sum_probs=234.0
Q ss_pred cccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCC
Q 008605 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (560)
Q Consensus 267 ~~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~ 346 (560)
..+|++++|++.++++|.++||..||++|.+|||.++.|+|++++||||||||++|++|+++.+...... ......++
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~--~~~~~~~~ 84 (423)
T PRK04837 7 EQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAP--EDRKVNQP 84 (423)
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccc--cccccCCc
Confidence 3689999999999999999999999999999999999999999999999999999999999998764321 11123468
Q ss_pred EEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEE
Q 008605 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (560)
Q Consensus 347 ~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LVi 426 (560)
++|||+||+|||.|+++.+..+... .++++..++||.....+...+..+++|+|+||++|.+++..+.+.+.++++|||
T Consensus 85 ~~lil~PtreLa~Qi~~~~~~l~~~-~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lVi 163 (423)
T PRK04837 85 RALIMAPTRELAVQIHADAEPLAQA-TGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVL 163 (423)
T ss_pred eEEEECCcHHHHHHHHHHHHHHhcc-CCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEE
Confidence 9999999999999999999998874 678999999999988888888888999999999999999988889999999999
Q ss_pred ccccccCCCCChHHHHHHHHhhCCC--CCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCCC
Q 008605 427 DEVDILFNDEDFEVALQSLISSSPV--TAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504 (560)
Q Consensus 427 DEah~ll~d~~f~~~l~~Il~~~~~--~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~ 504 (560)
||||+|+ +.+|...+..++..++. ..|.++||||++..+...+...+.++..+...........+.+.++....
T Consensus 164 DEad~l~-~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~--- 239 (423)
T PRK04837 164 DEADRMF-DLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSN--- 239 (423)
T ss_pred ecHHHHh-hcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCH---
Confidence 9999999 88999999999998874 56789999999999988888888777666554444455566666655432
Q ss_pred CCCChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhhc
Q 008605 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFFS 553 (560)
Q Consensus 505 ~~~~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l~ 553 (560)
.+|...|..++......++||||+++..|+.++..|+..+
T Consensus 240 ---------~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g 279 (423)
T PRK04837 240 ---------EEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADG 279 (423)
T ss_pred ---------HHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCC
Confidence 3678889999888777899999999999999999997653
No 9
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=5.1e-40 Score=358.24 Aligned_cols=263 Identities=27% Similarity=0.409 Sum_probs=234.5
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCE
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 347 (560)
.+|++|+|++.++++|.++||..|||+|.+|||.++.|+|++++||||||||++|++|+++.+... ...++
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~---------~~~~~ 74 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK---------RFRVQ 74 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc---------cCCce
Confidence 579999999999999999999999999999999999999999999999999999999999987532 23568
Q ss_pred EEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEc
Q 008605 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427 (560)
Q Consensus 348 aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViD 427 (560)
+|||+||++||.|+.+.++.+.....++++..++||.+...+...+..+++|+|+||++|.+++.++.+.+.++++||||
T Consensus 75 ~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViD 154 (460)
T PRK11776 75 ALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLD 154 (460)
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEE
Confidence 99999999999999999999877545789999999999999988898999999999999999999888889999999999
Q ss_pred cccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCCCCCC
Q 008605 428 EVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507 (560)
Q Consensus 428 Eah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~~~~ 507 (560)
|||+|+ +++|...+..++..++...|+++||||+|+.+..+...++.++..+...... ....+.+.++.+..
T Consensus 155 Ead~~l-~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~------ 226 (460)
T PRK11776 155 EADRML-DMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH-DLPAIEQRFYEVSP------ 226 (460)
T ss_pred CHHHHh-CcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-CCCCeeEEEEEeCc------
Confidence 999999 8999999999999999999999999999999988887777777665544332 34557888887765
Q ss_pred ChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhhc
Q 008605 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFFS 553 (560)
Q Consensus 508 ~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l~ 553 (560)
..|...|..++......++|||||++++|+.+++.|+..+
T Consensus 227 ------~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~ 266 (460)
T PRK11776 227 ------DERLPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQG 266 (460)
T ss_pred ------HHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhCC
Confidence 2588889999988777899999999999999999997754
No 10
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=1.4e-42 Score=350.12 Aligned_cols=314 Identities=25% Similarity=0.349 Sum_probs=272.3
Q ss_pred CCCCCCCcCCCCCccCCCcccCcccccCcCCccccccCCCCCcc--ccccccccCCCHHHHHHHHHCCCCCChHHHHHHH
Q 008605 222 NKHEKSGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFF--SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAF 299 (560)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~--~~~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~ai 299 (560)
.+..+..++....|+++..+..++.+..+..+...++..+++.. ++++|.+|.|+..+++.|++.|+.+|||||.+.+
T Consensus 122 akGi~Y~ePi~T~WkPP~hir~mS~e~~e~vRk~~~I~veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGl 201 (610)
T KOG0341|consen 122 AKGITYEEPIKTAWKPPRHIRKMSEEQRELVRKQLHILVEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGL 201 (610)
T ss_pred hCCCcccCcchhccCCcHHHHHhhHHHHHHHHHhheEEeeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCc
Confidence 34456778899999999999988888877776666777777766 5689999999999999999999999999999999
Q ss_pred HHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhhc----C-CCC
Q 008605 300 PPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK----C-GVP 374 (560)
Q Consensus 300 p~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~----~-~~~ 374 (560)
|.+++|+|+|.+|-||||||++|.||++...++++. .++.....+|..|||||+||||.|+++.+..+.. . .+.
T Consensus 202 PvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~-~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~ 280 (610)
T KOG0341|consen 202 PVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEM-MLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPE 280 (610)
T ss_pred ceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHh-cCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 999999999999999999999999999999887754 4677888999999999999999999998877643 1 256
Q ss_pred ceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCCChHHHHHHHHhhCCCCCc
Q 008605 375 FRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQ 454 (560)
Q Consensus 375 i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q 454 (560)
++..++.||.+..+|...++.|+||+|+||++|.+++..+.+.|.-++||++||||+|+ |++|...++.|+..+...+|
T Consensus 281 lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmi-DmGFEddir~iF~~FK~QRQ 359 (610)
T KOG0341|consen 281 LRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMI-DMGFEDDIRTIFSFFKGQRQ 359 (610)
T ss_pred hhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHh-hccchhhHHHHHHHHhhhhh
Confidence 89999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred EEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCCCCCCChhhhhhhHHHHHHHHHHhCCCCcEEE
Q 008605 455 YLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIV 534 (560)
Q Consensus 455 ~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~K~~~L~~lL~~~~~~ktII 534 (560)
+++||||+|..++.+....+-.++.+........+.++-|.+-++.. ..|+-.|.+-|... ..++||
T Consensus 360 TLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVkq------------EaKiVylLeCLQKT-~PpVLI 426 (610)
T KOG0341|consen 360 TLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQ------------EAKIVYLLECLQKT-SPPVLI 426 (610)
T ss_pred eeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHHHh------------hhhhhhHHHHhccC-CCceEE
Confidence 99999999999999998888888777665555555554443333322 35667777776553 368999
Q ss_pred EeCchHHHHHHHHHHH
Q 008605 535 FCNKVCFSYKCNNLFG 550 (560)
Q Consensus 535 FcnS~~~a~~la~~Lk 550 (560)
||..+.+++.+.++|-
T Consensus 427 FaEkK~DVD~IhEYLL 442 (610)
T KOG0341|consen 427 FAEKKADVDDIHEYLL 442 (610)
T ss_pred EeccccChHHHHHHHH
Confidence 9999999999999984
No 11
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1e-39 Score=365.99 Aligned_cols=264 Identities=27% Similarity=0.427 Sum_probs=236.4
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCE
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 347 (560)
.+|.+|+|++.++++|.++||..|||+|.++||.++.|+|+|++||||||||++|++|+++.+... ...++
T Consensus 6 ~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~---------~~~~~ 76 (629)
T PRK11634 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE---------LKAPQ 76 (629)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc---------cCCCe
Confidence 579999999999999999999999999999999999999999999999999999999999887532 34679
Q ss_pred EEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEc
Q 008605 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427 (560)
Q Consensus 348 aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViD 427 (560)
+|||+||++||.|+++.+..+..+..++.+..++||.....+...+..+++|+|+||++|++++.++.+.++++++||||
T Consensus 77 ~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlD 156 (629)
T PRK11634 77 ILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLD 156 (629)
T ss_pred EEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEec
Confidence 99999999999999999999877555789999999999999988888899999999999999999988899999999999
Q ss_pred cccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCCCCCC
Q 008605 428 EVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507 (560)
Q Consensus 428 Eah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~~~~ 507 (560)
|||+|+ +++|...+..|+..++...|+++||||+|..+......++.++..+.........+.+.+.++.+..
T Consensus 157 EAd~ml-~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~------ 229 (629)
T PRK11634 157 EADEML-RMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWG------ 229 (629)
T ss_pred cHHHHh-hcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEech------
Confidence 999999 8999999999999999999999999999999988888888877666555445556677777776654
Q ss_pred ChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhhc
Q 008605 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFFS 553 (560)
Q Consensus 508 ~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l~ 553 (560)
.+|...|..++......++||||+|+..|+.++..|+..+
T Consensus 230 ------~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g 269 (629)
T PRK11634 230 ------MRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNG 269 (629)
T ss_pred ------hhHHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhCC
Confidence 3678889999988777899999999999999999998653
No 12
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1.2e-39 Score=354.84 Aligned_cols=267 Identities=28% Similarity=0.412 Sum_probs=231.7
Q ss_pred cccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEE
Q 008605 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRV 348 (560)
Q Consensus 269 sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~a 348 (560)
+|++|+|++.++++|.++||..||++|.++||.++.|+|+|++||||||||++|++|+++.+...... ......+++
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~---~~~~~~~~a 78 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPH---AKGRRPVRA 78 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccc---cccCCCceE
Confidence 69999999999999999999999999999999999999999999999999999999999998654211 111234689
Q ss_pred EEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEcc
Q 008605 349 VILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDE 428 (560)
Q Consensus 349 Lil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDE 428 (560)
|||+||++||.|+++.++.+..+ .++++..++|+.....+...+..+++|+|+||++|++++....+.++++++|||||
T Consensus 79 Lil~PtreLa~Qi~~~~~~~~~~-~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDE 157 (456)
T PRK10590 79 LILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDE 157 (456)
T ss_pred EEEeCcHHHHHHHHHHHHHHhcc-CCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeec
Confidence 99999999999999999998774 67899999999999888888888899999999999999988888899999999999
Q ss_pred ccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCCCCCCC
Q 008605 429 VDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508 (560)
Q Consensus 429 ah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~~~~~ 508 (560)
||+|+ +++|...++.++..++...|+++||||++.++..+...++.++..+...........+.+.+..+..
T Consensus 158 ah~ll-~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~------- 229 (456)
T PRK10590 158 ADRML-DMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDK------- 229 (456)
T ss_pred HHHHh-ccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCH-------
Confidence 99999 8899999999999999999999999999999888777888777655544344455567777766553
Q ss_pred hhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhh
Q 008605 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFF 552 (560)
Q Consensus 509 ~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l 552 (560)
..+...|..++......++|||||++..|+.+++.|+..
T Consensus 230 -----~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~ 268 (456)
T PRK10590 230 -----KRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKD 268 (456)
T ss_pred -----HHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHC
Confidence 256677888887777789999999999999999999764
No 13
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-40 Score=348.17 Aligned_cols=267 Identities=27% Similarity=0.364 Sum_probs=243.3
Q ss_pred cccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCC
Q 008605 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (560)
Q Consensus 267 ~~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~ 346 (560)
++.|++|+|+...+++|++.+|..||.+|+.+||..+.|+|||..|.|||||||||++|+++.+...+| .+..|.
T Consensus 68 ~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kW-----s~~DGl 142 (758)
T KOG0343|consen 68 IKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKW-----SPTDGL 142 (758)
T ss_pred hhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCC-----CCCCCc
Confidence 468999999999999999999999999999999999999999999999999999999999999998766 446678
Q ss_pred EEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhc-cccCCCccEEE
Q 008605 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG-ILQLINLRCAI 425 (560)
Q Consensus 347 ~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~-~~~l~~l~~LV 425 (560)
-||||+||||||.|+++.+.+++++ ..+..+++.||........++. +++|||||||||++++... .+...++.+||
T Consensus 143 GalIISPTRELA~QtFevL~kvgk~-h~fSaGLiiGG~~~k~E~eRi~-~mNILVCTPGRLLQHmde~~~f~t~~lQmLv 220 (758)
T KOG0343|consen 143 GALIISPTRELALQTFEVLNKVGKH-HDFSAGLIIGGKDVKFELERIS-QMNILVCTPGRLLQHMDENPNFSTSNLQMLV 220 (758)
T ss_pred eeEEecchHHHHHHHHHHHHHHhhc-cccccceeecCchhHHHHHhhh-cCCeEEechHHHHHHhhhcCCCCCCcceEEE
Confidence 8999999999999999999999986 7899999999999887777764 4999999999999999874 56788999999
Q ss_pred EccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeC--CCccccCCCceeEEEEcCCCC
Q 008605 426 LDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMG--PGMHRISPGLEEFLVDCSGDQ 503 (560)
Q Consensus 426 iDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~--~~~~~~~~~i~~~~v~~~~~~ 503 (560)
+||||+|+ |++|...+..|++.+|+.+|+++||||....+..++.-.+.++.++-. .....++.++.|+|+.++-
T Consensus 221 LDEADR~L-DMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l-- 297 (758)
T KOG0343|consen 221 LDEADRML-DMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPL-- 297 (758)
T ss_pred eccHHHHH-HHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEeh--
Confidence 99999999 999999999999999999999999999999998877777787766543 3446788899999999886
Q ss_pred CCCCChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhhc
Q 008605 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFFS 553 (560)
Q Consensus 504 ~~~~~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l~ 553 (560)
.+|+..|..+++.+...++|||+.|.++++.+++.+.+|.
T Consensus 298 ----------~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlr 337 (758)
T KOG0343|consen 298 ----------EDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLR 337 (758)
T ss_pred ----------hhHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhcC
Confidence 3799999999999999999999999999999999998873
No 14
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.3e-39 Score=360.61 Aligned_cols=270 Identities=29% Similarity=0.416 Sum_probs=231.7
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCE
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 347 (560)
.+|++|+|++.++++|.++||..||++|.++||.++.|+|++++||||||||++|++|+++.+..... ........++
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~--~~~~~~~~~r 86 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPA--LADRKPEDPR 86 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc--ccccccCCce
Confidence 46999999999999999999999999999999999999999999999999999999999998875321 0111223689
Q ss_pred EEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhc-cccCCCccEEEE
Q 008605 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG-ILQLINLRCAIL 426 (560)
Q Consensus 348 aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~-~~~l~~l~~LVi 426 (560)
+|||+||+||+.|+++.++.++.. .++++..++|+.....+...+..+++|||+||++|++++... .+.+..+++|||
T Consensus 87 aLIl~PTreLa~Qi~~~~~~l~~~-~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lVi 165 (572)
T PRK04537 87 ALILAPTRELAIQIHKDAVKFGAD-LGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVL 165 (572)
T ss_pred EEEEeCcHHHHHHHHHHHHHHhcc-CCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEe
Confidence 999999999999999999999874 678999999999998888888888999999999999998764 567889999999
Q ss_pred ccccccCCCCChHHHHHHHHhhCCC--CCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCCC
Q 008605 427 DEVDILFNDEDFEVALQSLISSSPV--TAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504 (560)
Q Consensus 427 DEah~ll~d~~f~~~l~~Il~~~~~--~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~ 504 (560)
||||+|+ +.+|...+..|++.++. ..|+++||||++..+..++..++..+..+...........+.+.++.+..
T Consensus 166 DEAh~ll-d~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~--- 241 (572)
T PRK04537 166 DEADRMF-DLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPAD--- 241 (572)
T ss_pred cCHHHHh-hcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCH---
Confidence 9999999 88999999999999886 78999999999999988888888776555444334455567777666543
Q ss_pred CCCChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhhc
Q 008605 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFFS 553 (560)
Q Consensus 505 ~~~~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l~ 553 (560)
.+|...|..++......++||||||+..|+.+++.|...+
T Consensus 242 ---------~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g 281 (572)
T PRK04537 242 ---------EEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHG 281 (572)
T ss_pred ---------HHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcC
Confidence 3678888889888777899999999999999999997653
No 15
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=4.3e-39 Score=355.38 Aligned_cols=270 Identities=25% Similarity=0.398 Sum_probs=229.1
Q ss_pred cccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCC
Q 008605 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (560)
Q Consensus 267 ~~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~ 346 (560)
..+|++++|++.++++|.++||..|||+|.++||.++.|+|++++||||||||++|++|++.++...... ......++
T Consensus 120 i~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~--~~~~~~~~ 197 (518)
T PLN00206 120 ILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSG--HPSEQRNP 197 (518)
T ss_pred hcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccc--cccccCCc
Confidence 3689999999999999999999999999999999999999999999999999999999999988643211 11223678
Q ss_pred EEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEE
Q 008605 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (560)
Q Consensus 347 ~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LVi 426 (560)
++|||+||||||.|+++.++.+... .++++..++||.....+...+..+++|+|+||++|.+++.++.+.+.++++|||
T Consensus 198 ~aLIL~PTreLa~Qi~~~~~~l~~~-~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lVi 276 (518)
T PLN00206 198 LAMVLTPTRELCVQVEDQAKVLGKG-LPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVL 276 (518)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhCC-CCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEe
Confidence 9999999999999999999988763 578899999999988888888889999999999999999988889999999999
Q ss_pred ccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCCCCC
Q 008605 427 DEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506 (560)
Q Consensus 427 DEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~~~ 506 (560)
||||+|+ +++|...+..|+..++ ..|+++||||++..+..+....+.++..+...........+.+.++.+..
T Consensus 277 DEad~ml-~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~----- 349 (518)
T PLN00206 277 DEVDCML-ERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVET----- 349 (518)
T ss_pred ecHHHHh-hcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccc-----
Confidence 9999999 8899999999998885 68999999999999887777777776665544444455567777776654
Q ss_pred CChhhhhhhHHHHHHHHHHhCC--CCcEEEEeCchHHHHHHHHHHHhhc
Q 008605 507 KTPETAFLNKKSALLQLIEKSP--VSKTIVFCNKVCFSYKCNNLFGFFS 553 (560)
Q Consensus 507 ~~~~~~~~~K~~~L~~lL~~~~--~~ktIIFcnS~~~a~~la~~Lk~l~ 553 (560)
..|...|.+++.... ..++||||+++..|+.+++.|....
T Consensus 350 -------~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~ 391 (518)
T PLN00206 350 -------KQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVT 391 (518)
T ss_pred -------hhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhcc
Confidence 245667777776532 3689999999999999999997643
No 16
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.3e-41 Score=332.13 Aligned_cols=263 Identities=25% Similarity=0.407 Sum_probs=243.7
Q ss_pred cccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCC
Q 008605 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (560)
Q Consensus 267 ~~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~ 346 (560)
...|+++.|..+++..+.+.||+.|+|+|.++||.++.|+|+++.|..|+|||.+|.+|++..+... ....
T Consensus 84 G~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~---------~~~I 154 (459)
T KOG0326|consen 84 GNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPK---------KNVI 154 (459)
T ss_pred CccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCcc---------ccce
Confidence 3689999999999999999999999999999999999999999999999999999999999987533 4567
Q ss_pred EEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEE
Q 008605 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (560)
Q Consensus 347 ~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LVi 426 (560)
+++|++||||||.|+...+++++++ .++.+...+||++..+.+-++...+|++|+||+|++++...+...++++.++|+
T Consensus 155 Q~~ilVPtrelALQtSqvc~~lskh-~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~ 233 (459)
T KOG0326|consen 155 QAIILVPTRELALQTSQVCKELSKH-LGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVM 233 (459)
T ss_pred eEEEEeecchhhHHHHHHHHHHhcc-cCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEe
Confidence 8999999999999999999999985 679999999999999999899999999999999999999999999999999999
Q ss_pred ccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCCCCC
Q 008605 427 DEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506 (560)
Q Consensus 427 DEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~~~ 506 (560)
||||.|+ +..|.+.++.++..+|+.+|++++|||+|-.+..++.+++.++..+.-. .+.+...+.|+|.++..
T Consensus 234 DEADKlL-s~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM-~eLtl~GvtQyYafV~e----- 306 (459)
T KOG0326|consen 234 DEADKLL-SVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLM-EELTLKGVTQYYAFVEE----- 306 (459)
T ss_pred chhhhhh-chhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehh-hhhhhcchhhheeeech-----
Confidence 9999999 7899999999999999999999999999999999999999888776443 56778889999999876
Q ss_pred CChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhhc
Q 008605 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFFS 553 (560)
Q Consensus 507 ~~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l~ 553 (560)
..|+..|..++.+....+.||||||.++++.+|..+.+++
T Consensus 307 -------~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITelG 346 (459)
T KOG0326|consen 307 -------RQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELG 346 (459)
T ss_pred -------hhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhcc
Confidence 3688999999998888999999999999999999988876
No 17
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=3.7e-38 Score=341.12 Aligned_cols=266 Identities=29% Similarity=0.445 Sum_probs=229.3
Q ss_pred cccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEE
Q 008605 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRV 348 (560)
Q Consensus 269 sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~a 348 (560)
+|++|+|++.++++|.++||..|+++|.++|++++.|+|++++||||+|||++|++|+++.+.... ......+++
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~-----~~~~~~~~~ 76 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFP-----RRKSGPPRI 76 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhcc-----ccCCCCceE
Confidence 699999999999999999999999999999999999999999999999999999999999886531 122345799
Q ss_pred EEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEcc
Q 008605 349 VILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDE 428 (560)
Q Consensus 349 Lil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDE 428 (560)
|||+||++||.|+++.++.+... .++.+..++|+.....+...+..+++|+|+||++|++++..+.+.+.++++|||||
T Consensus 77 lil~Pt~eLa~Q~~~~~~~l~~~-~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDE 155 (434)
T PRK11192 77 LILTPTRELAMQVADQARELAKH-THLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDE 155 (434)
T ss_pred EEECCcHHHHHHHHHHHHHHHcc-CCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEEC
Confidence 99999999999999999999874 67899999999999888888888899999999999999999888899999999999
Q ss_pred ccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHH-HHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCCCCCC
Q 008605 429 VDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVE-IYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507 (560)
Q Consensus 429 ah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~-v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~~~~ 507 (560)
||+|+ +++|...+..+...++...|+++||||++.. +..+....+.++..+...........+.+.++.+...
T Consensus 156 ah~~l-~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~----- 229 (434)
T PRK11192 156 ADRML-DMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDL----- 229 (434)
T ss_pred HHHHh-CCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCH-----
Confidence 99999 8999999999999998899999999999864 5454555555665554444445556677777665432
Q ss_pred ChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhh
Q 008605 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFF 552 (560)
Q Consensus 508 ~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l 552 (560)
..|...|..+++.....++||||+++++|+.++..|+..
T Consensus 230 ------~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~ 268 (434)
T PRK11192 230 ------EHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKA 268 (434)
T ss_pred ------HHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhC
Confidence 367888889988767789999999999999999999864
No 18
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=4.1e-39 Score=334.69 Aligned_cols=269 Identities=29% Similarity=0.429 Sum_probs=237.9
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCC
Q 008605 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGS 345 (560)
Q Consensus 266 ~~~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~ 345 (560)
....|+++.|++..+++++++||..+|++|..+|+.++.|+|+++.|.||||||+||++|+++.+.... +...++
T Consensus 80 ~~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~-----~~~r~~ 154 (543)
T KOG0342|consen 80 TTFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLK-----FKPRNG 154 (543)
T ss_pred hhhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcc-----cCCCCC
Confidence 456899999999999999999999999999999999999999999999999999999999999998753 344578
Q ss_pred CEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHh-ccccCCCccEE
Q 008605 346 PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE-GILQLINLRCA 424 (560)
Q Consensus 346 ~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~-~~~~l~~l~~L 424 (560)
..+||||||||||.|++.+++++..++..+.+..+.||.......+++..+|+|+|+|||+|++++++ ..+.+.+++++
T Consensus 155 ~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~l 234 (543)
T KOG0342|consen 155 TGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCL 234 (543)
T ss_pred eeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhcccee
Confidence 88999999999999999999999998678999999999999988899989999999999999999988 44567788999
Q ss_pred EEccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCC-CeEEeC--CCccccCCCceeEEEEcCC
Q 008605 425 ILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMG--PGMHRISPGLEEFLVDCSG 501 (560)
Q Consensus 425 ViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~-~~~i~~--~~~~~~~~~i~~~~v~~~~ 501 (560)
|+||||+++ +.+|+..++.|+..+|..+|.++||||.|..+.+...-.+.. +.++-. .....+...+.|-|+.++.
T Consensus 235 vlDEADrlL-d~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~ 313 (543)
T KOG0342|consen 235 VLDEADRLL-DIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPS 313 (543)
T ss_pred Eeecchhhh-hcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccc
Confidence 999999999 899999999999999999999999999999998766655543 444433 3445677789998888877
Q ss_pred CCCCCCChhhhhhhHHHHHHHHHHhCCC-CcEEEEeCchHHHHHHHHHHHhh
Q 008605 502 DQESDKTPETAFLNKKSALLQLIEKSPV-SKTIVFCNKVCFSYKCNNLFGFF 552 (560)
Q Consensus 502 ~~~~~~~~~~~~~~K~~~L~~lL~~~~~-~ktIIFcnS~~~a~~la~~Lk~l 552 (560)
+ .++..|..+|+++.. .++||||.|...+..+++.|+++
T Consensus 314 ~------------~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~ 353 (543)
T KOG0342|consen 314 D------------SRFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYI 353 (543)
T ss_pred c------------chHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhc
Confidence 4 456888888888754 89999999999999999999854
No 19
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.1e-39 Score=330.07 Aligned_cols=268 Identities=26% Similarity=0.412 Sum_probs=238.0
Q ss_pred ccccccCC--CHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCC
Q 008605 268 KSFKELGC--SDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGS 345 (560)
Q Consensus 268 ~sF~~l~L--~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~ 345 (560)
.+|++++. +++++++|..+||..+||+|..+||.++.++||++.|+||||||+||++|++..+..+... .....
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~----~~~~~ 79 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAK----TPPGQ 79 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccC----CCccc
Confidence 46777765 5999999999999999999999999999999999999999999999999999999654321 11224
Q ss_pred CEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhc-CCCcEEEECHHHHHHHHHhcc--ccCCCcc
Q 008605 346 PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ-EGVDVLIATPGRFMFLIKEGI--LQLINLR 422 (560)
Q Consensus 346 ~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~-~~~~IlV~TP~~L~~ll~~~~--~~l~~l~ 422 (560)
.-+|||+|||||+.||.+++..+..+..++.+.+++||....+....+. ++++|+|||||||.+++++.. +.+.++.
T Consensus 80 vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe 159 (567)
T KOG0345|consen 80 VGALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLE 159 (567)
T ss_pred eeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccc
Confidence 6799999999999999999999887667899999999999888887775 579999999999999999844 4556999
Q ss_pred EEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccc--cCCCceeEEEEcC
Q 008605 423 CAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHR--ISPGLEEFLVDCS 500 (560)
Q Consensus 423 ~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~--~~~~i~~~~v~~~ 500 (560)
+||+||||+++ |++|...++.|++.+|+.+++-+||||...++.++....+.+++.+....... ++..+..+|+.|.
T Consensus 160 ~LVLDEADrLl-dmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~ 238 (567)
T KOG0345|consen 160 ILVLDEADRLL-DMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCE 238 (567)
T ss_pred eEEecchHhHh-cccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEec
Confidence 99999999999 99999999999999999999999999999999998888899988776654443 7888999999998
Q ss_pred CCCCCCCChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhh
Q 008605 501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFF 552 (560)
Q Consensus 501 ~~~~~~~~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l 552 (560)
.+ .|...|.++|.....+++|||..|-..++..+..|..+
T Consensus 239 a~------------eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~ 278 (567)
T KOG0345|consen 239 AD------------EKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRL 278 (567)
T ss_pred HH------------HHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHH
Confidence 74 79999999999988899999999999999999999887
No 20
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.1e-39 Score=334.24 Aligned_cols=269 Identities=26% Similarity=0.426 Sum_probs=243.1
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCC
Q 008605 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGS 345 (560)
Q Consensus 266 ~~~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~ 345 (560)
++.+|+++++.+.|+.++++..|++|||+|.+++|..+.|+|++.+|.||||||.+|+.|++.++..++. -....+
T Consensus 221 pvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~e----L~~g~g 296 (731)
T KOG0339|consen 221 PVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPE----LKPGEG 296 (731)
T ss_pred CcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhh----hcCCCC
Confidence 5689999999999999999999999999999999999999999999999999999999999999986532 134789
Q ss_pred CEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEE
Q 008605 346 PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAI 425 (560)
Q Consensus 346 ~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LV 425 (560)
|.+||++|||+||.|++.++++|++ ..++++++++||.+..+|...|..++.||||||+||++++..+..++.++.+||
T Consensus 297 Pi~vilvPTrela~Qi~~eaKkf~K-~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV 375 (731)
T KOG0339|consen 297 PIGVILVPTRELASQIFSEAKKFGK-AYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLV 375 (731)
T ss_pred CeEEEEeccHHHHHHHHHHHHHhhh-hccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEE
Confidence 9999999999999999999999987 378999999999999999999999999999999999999999999999999999
Q ss_pred EccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCCCC
Q 008605 426 LDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505 (560)
Q Consensus 426 iDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~~ 505 (560)
|||||+|+ +++|.++++.|...+.+++|+|+||||++..+..+....+.+++.++.-........|.|.+..|.+++
T Consensus 376 ~DEadrmf-dmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~-- 452 (731)
T KOG0339|consen 376 LDEADRMF-DMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEE-- 452 (731)
T ss_pred Eechhhhh-ccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcH--
Confidence 99999999 999999999999999999999999999999999999999988877776667778889999999988753
Q ss_pred CCChhhhhhhHHHHHHHHHHh-CCCCcEEEEeCchHHHHHHHHHHHh
Q 008605 506 DKTPETAFLNKKSALLQLIEK-SPVSKTIVFCNKVCFSYKCNNLFGF 551 (560)
Q Consensus 506 ~~~~~~~~~~K~~~L~~lL~~-~~~~ktIIFcnS~~~a~~la~~Lk~ 551 (560)
.|+.-|..-|-. ...+++|||+..+..+++++..|+.
T Consensus 453 ---------~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lkl 490 (731)
T KOG0339|consen 453 ---------KKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKL 490 (731)
T ss_pred ---------HHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhcc
Confidence 455444443333 3457999999999999999999864
No 21
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.9e-39 Score=329.50 Aligned_cols=270 Identities=26% Similarity=0.415 Sum_probs=231.6
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCE
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 347 (560)
++|++|||.+.+++++.+.||.+||-+|+.|||.++.|+|+++.|.||||||++|++|+++.++...... ....++.
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~---~~e~~~s 95 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTN---DGEQGPS 95 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcc---cccccce
Confidence 6899999999999999999999999999999999999999999999999999999999999998775432 4567999
Q ss_pred EEEEcCCHHHHHHHHHHHHhhhcCC-CCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhcc-ccCCCccEEE
Q 008605 348 VVILAPTAELASQVLSNCRSLSKCG-VPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGI-LQLINLRCAI 425 (560)
Q Consensus 348 aLil~PtreLa~Qi~~~l~~l~~~~-~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~-~~l~~l~~LV 425 (560)
++||+||||||+|++..+.++..+. ..+++.-+..+.+.......+...++|+|+||++++.++..+. ..+..+++||
T Consensus 96 a~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LV 175 (569)
T KOG0346|consen 96 AVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLV 175 (569)
T ss_pred eEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEE
Confidence 9999999999999999999987643 3677777776665555556677779999999999999999876 6788999999
Q ss_pred EccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCC-CccccCCCceeEEEEcCCCCC
Q 008605 426 LDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGP-GMHRISPGLEEFLVDCSGDQE 504 (560)
Q Consensus 426 iDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~-~~~~~~~~i~~~~v~~~~~~~ 504 (560)
+||||.++ ..||...++.|.+.+|+..|.++||||+..++..+=.-.+.++.++.-. .....+..+.|+++.|..
T Consensus 176 vDEADLll-sfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse--- 251 (569)
T KOG0346|consen 176 VDEADLLL-SFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSE--- 251 (569)
T ss_pred echhhhhh-hcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEecc---
Confidence 99999999 7999999999999999999999999999999977555555777765433 223445678999999984
Q ss_pred CCCChhhhhhhHHHHHHHHHHhC-CCCcEEEEeCchHHHHHHHHHHHhhc
Q 008605 505 SDKTPETAFLNKKSALLQLIEKS-PVSKTIVFCNKVCFSYKCNNLFGFFS 553 (560)
Q Consensus 505 ~~~~~~~~~~~K~~~L~~lL~~~-~~~ktIIFcnS~~~a~~la~~Lk~l~ 553 (560)
.+|...|+.+++-. =.+++|||+|+.+.|.++.-+|..++
T Consensus 252 ---------~DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFG 292 (569)
T KOG0346|consen 252 ---------EDKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFG 292 (569)
T ss_pred ---------chhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhC
Confidence 36888888887643 35799999999999999999998875
No 22
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.4e-39 Score=337.92 Aligned_cols=273 Identities=29% Similarity=0.439 Sum_probs=239.1
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCC-CCCC
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKST-SGSP 346 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~-~~~~ 346 (560)
.+|.+..+.+.+..++...||..|||+|+.+||.+..|+++++||+||||||.+|++|++.+++.+......... ...|
T Consensus 74 ~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P 153 (482)
T KOG0335|consen 74 PTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYP 153 (482)
T ss_pred ccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCC
Confidence 478988999999999999999999999999999999999999999999999999999999999887543322222 2479
Q ss_pred EEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEE
Q 008605 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (560)
Q Consensus 347 ~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LVi 426 (560)
++||++||||||.|++++.+++.. ...+++...+||.+...+.+.+.++|+|+|+||++|.+++..+.+.|.++++|||
T Consensus 154 ~~lIlapTReL~~Qi~nea~k~~~-~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vL 232 (482)
T KOG0335|consen 154 RALILAPTRELVDQIYNEARKFSY-LSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVL 232 (482)
T ss_pred ceEEEeCcHHHhhHHHHHHHhhcc-cccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEe
Confidence 999999999999999999999864 5789999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCChHHHHHHHHhhCCC----CCcEEEEeccCCHHHHHHHHHhCCC-CeEEeCCCccccCCCceeEEEEcCC
Q 008605 427 DEVDILFNDEDFEVALQSLISSSPV----TAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSG 501 (560)
Q Consensus 427 DEah~ll~d~~f~~~l~~Il~~~~~----~~Q~IllSATlp~~v~~~l~~~~~~-~~~i~~~~~~~~~~~i~~~~v~~~~ 501 (560)
||||+|++.++|.+.|+.|+.+... .+|.++||||+|..+...+..++.+ +..+..........++.|.+.++..
T Consensus 233 DEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~ 312 (482)
T KOG0335|consen 233 DEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVNE 312 (482)
T ss_pred cchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeeecc
Confidence 9999999339999999999988753 7899999999999999866666665 5555556667888899999999876
Q ss_pred CCCCCCChhhhhhhHHHHHHHHHHhCC----C-----CcEEEEeCchHHHHHHHHHHHhhc
Q 008605 502 DQESDKTPETAFLNKKSALLQLIEKSP----V-----SKTIVFCNKVCFSYKCNNLFGFFS 553 (560)
Q Consensus 502 ~~~~~~~~~~~~~~K~~~L~~lL~~~~----~-----~ktIIFcnS~~~a~~la~~Lk~l~ 553 (560)
.+|...|.++|.... . +.++|||.+++.|..++.+|...+
T Consensus 313 ------------~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~ 361 (482)
T KOG0335|consen 313 ------------MEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNG 361 (482)
T ss_pred ------------hhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCC
Confidence 468888888887432 2 389999999999999999997653
No 23
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=8.7e-37 Score=334.11 Aligned_cols=270 Identities=26% Similarity=0.380 Sum_probs=228.6
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCE
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 347 (560)
..|.+++|++.++++|.++||..|+++|.++|+.++.|+|+|+++|||||||++|++|+++.+...... .......++
T Consensus 87 ~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~--~~~~~~~~~ 164 (475)
T PRK01297 87 TRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPP--KERYMGEPR 164 (475)
T ss_pred CCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcc--cccccCCce
Confidence 579999999999999999999999999999999999999999999999999999999999998754210 001123579
Q ss_pred EEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhc-CCCcEEEECHHHHHHHHHhccccCCCccEEEE
Q 008605 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ-EGVDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (560)
Q Consensus 348 aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~-~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LVi 426 (560)
+|||+||++||.|+++.++.+..+ .++.+..++||.....+.+.+. ..++|+|+||++|+.++..+...+.++++|||
T Consensus 165 aLil~PtreLa~Q~~~~~~~l~~~-~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lVi 243 (475)
T PRK01297 165 ALIIAPTRELVVQIAKDAAALTKY-TGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVL 243 (475)
T ss_pred EEEEeCcHHHHHHHHHHHHHhhcc-CCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEe
Confidence 999999999999999999999764 5788999999988877766664 46899999999999999888888999999999
Q ss_pred ccccccCCCCChHHHHHHHHhhCCC--CCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCCC
Q 008605 427 DEVDILFNDEDFEVALQSLISSSPV--TAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504 (560)
Q Consensus 427 DEah~ll~d~~f~~~l~~Il~~~~~--~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~ 504 (560)
||||+++ +.+|...++.|++.++. ..|++++|||++..+.+.+..++.++..+...........+.+.++.+..
T Consensus 244 DEah~l~-~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--- 319 (475)
T PRK01297 244 DEADRML-DMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAG--- 319 (475)
T ss_pred chHHHHH-hcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecc---
Confidence 9999999 78999999999998864 57999999999999888888888777665544444445556666666554
Q ss_pred CCCChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhhc
Q 008605 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFFS 553 (560)
Q Consensus 505 ~~~~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l~ 553 (560)
.+|...|..++......++||||+++++|+.+++.|...+
T Consensus 320 ---------~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~ 359 (475)
T PRK01297 320 ---------SDKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDG 359 (475)
T ss_pred ---------hhHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcC
Confidence 3577888888888777899999999999999999997653
No 24
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.4e-38 Score=329.47 Aligned_cols=273 Identities=27% Similarity=0.358 Sum_probs=223.5
Q ss_pred ccccccccccCCCHHHHHHHHH-CCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCC
Q 008605 264 FFSRKSFKELGCSDYMIESLKR-QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKST 342 (560)
Q Consensus 264 ~~~~~sF~~l~L~~~ll~~L~~-~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~ 342 (560)
.+....|..|||++.+...|.. +++..||.+|.++||.+++|+|++|.++||||||++|++|+++.+...+. ...+
T Consensus 132 ~fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~---ki~R 208 (708)
T KOG0348|consen 132 PFTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEP---KIQR 208 (708)
T ss_pred ccccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCc---cccc
Confidence 3455789999999999999955 69999999999999999999999999999999999999999999976532 2246
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHh-ccccCCCc
Q 008605 343 SGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE-GILQLINL 421 (560)
Q Consensus 343 ~~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~-~~~~l~~l 421 (560)
..|+.||||+||||||.|+|+.+.++.++..=|..+.+.||........++++|++|||+|||||++++.+ ..+.++++
T Consensus 209 s~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~L 288 (708)
T KOG0348|consen 209 SDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRL 288 (708)
T ss_pred cCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeee
Confidence 78999999999999999999999999875333556778999999888899999999999999999999987 66789999
Q ss_pred cEEEEccccccCCCCChHHHHHHHHhhCC-------------CCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCc---
Q 008605 422 RCAILDEVDILFNDEDFEVALQSLISSSP-------------VTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGM--- 485 (560)
Q Consensus 422 ~~LViDEah~ll~d~~f~~~l~~Il~~~~-------------~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~--- 485 (560)
+|||+||+|+++ +.||+..+..|++.+. ...|.+++|||+...+.++..-.+.++..|-.+..
T Consensus 289 RwlVlDEaDrll-eLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~ 367 (708)
T KOG0348|consen 289 RWLVLDEADRLL-ELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQ 367 (708)
T ss_pred eEEEecchhHHH-hccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhh
Confidence 999999999999 8999999999988762 24789999999999998877667777777651111
Q ss_pred ----------------------cccCCCceeEEEEcCCCCCCCCChhhhhhhHHHHHHHHHH----hCCCCcEEEEeCch
Q 008605 486 ----------------------HRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIE----KSPVSKTIVFCNKV 539 (560)
Q Consensus 486 ----------------------~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~K~~~L~~lL~----~~~~~ktIIFcnS~ 539 (560)
..++..+.+.|..++.. -++-.|..+|. .....++|||..+.
T Consensus 368 ~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpK------------LRLV~Laa~L~~~~k~~~~qk~iVF~S~~ 435 (708)
T KOG0348|consen 368 LNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPK------------LRLVALAALLLNKVKFEEKQKMIVFFSCS 435 (708)
T ss_pred cCcchhhhhhcCCcccccccccccCcHHhhhceEecCCc------------hhHHHHHHHHHHHhhhhhhceeEEEEech
Confidence 12334455555555542 34444444443 34556899999999
Q ss_pred HHHHHHHHHHHhh
Q 008605 540 CFSYKCNNLFGFF 552 (560)
Q Consensus 540 ~~a~~la~~Lk~l 552 (560)
+.++.=+..|...
T Consensus 436 d~VeFHy~lf~~~ 448 (708)
T KOG0348|consen 436 DSVEFHYSLFSEA 448 (708)
T ss_pred hHHHHHHHHHHhh
Confidence 9999988888764
No 25
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.3e-38 Score=315.67 Aligned_cols=264 Identities=25% Similarity=0.331 Sum_probs=230.1
Q ss_pred cccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCC
Q 008605 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (560)
Q Consensus 267 ~~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~ 346 (560)
.+.|+.|||++|+.+.|+.+|+..|||+|..|||.|+.|+|+|.+|.||||||++|.+|+++++.++ +.+.
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsed---------P~gi 76 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSED---------PYGI 76 (442)
T ss_pred cCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccC---------CCcc
Confidence 4689999999999999999999999999999999999999999999999999999999999999765 5688
Q ss_pred EEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhc----cccCCCcc
Q 008605 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG----ILQLINLR 422 (560)
Q Consensus 347 ~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~----~~~l~~l~ 422 (560)
.++|+.||||||.|+.++|..+++. ..+++.+++||.+.-.+...|...+||+|+|||++.+++..+ ...+.+++
T Consensus 77 FalvlTPTrELA~QiaEQF~alGk~-l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlk 155 (442)
T KOG0340|consen 77 FALVLTPTRELALQIAEQFIALGKL-LNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLK 155 (442)
T ss_pred eEEEecchHHHHHHHHHHHHHhccc-ccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhcee
Confidence 9999999999999999999999885 789999999999999999999999999999999999998875 23588999
Q ss_pred EEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCC--CeEEeCCCccccCCCceeEEEEcC
Q 008605 423 CAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPD--CKVVMGPGMHRISPGLEEFLVDCS 500 (560)
Q Consensus 423 ~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~--~~~i~~~~~~~~~~~i~~~~v~~~ 500 (560)
++|+||||.|+ +..|...++.+.+.+|..+|+++||||+...+.....--... +..........+...+.+.|+.++
T Consensus 156 flVlDEADrvL-~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~ 234 (442)
T KOG0340|consen 156 FLVLDEADRVL-AGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVS 234 (442)
T ss_pred eEEecchhhhh-ccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecc
Confidence 99999999999 789999999999999999999999999998876544322222 222223233456677888899888
Q ss_pred CCCCCCCChhhhhhhHHHHHHHHHHhC---CCCcEEEEeCchHHHHHHHHHHHhhc
Q 008605 501 GDQESDKTPETAFLNKKSALLQLIEKS---PVSKTIVFCNKVCFSYKCNNLFGFFS 553 (560)
Q Consensus 501 ~~~~~~~~~~~~~~~K~~~L~~lL~~~---~~~ktIIFcnS~~~a~~la~~Lk~l~ 553 (560)
.+ .|-.+|+.+|+.. ..+.++||+|+..+|+.++..|+.|+
T Consensus 235 ~~------------vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le 278 (442)
T KOG0340|consen 235 ID------------VKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLE 278 (442)
T ss_pred hh------------hhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhc
Confidence 64 5668888888764 35789999999999999999998874
No 26
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-37 Score=345.62 Aligned_cols=270 Identities=27% Similarity=0.421 Sum_probs=240.4
Q ss_pred cccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCC
Q 008605 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (560)
Q Consensus 267 ~~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~ 346 (560)
..+|.+.|++..++..++++||..|++||.+|||+|+.|+|||++|.||||||++|+||++.++..++ +.....||
T Consensus 364 v~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr----~~~~gdGP 439 (997)
T KOG0334|consen 364 VTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQR----PLEEGDGP 439 (997)
T ss_pred cchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCC----ChhhCCCc
Confidence 47999999999999999999999999999999999999999999999999999999999997765442 22345699
Q ss_pred EEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccc---cCCCccE
Q 008605 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGIL---QLINLRC 423 (560)
Q Consensus 347 ~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~---~l~~l~~ 423 (560)
.+||++|||+|+.||++.+++|... .++++++++|+.....++..+++++.|+||||+++++++-.+.. ++.++.+
T Consensus 440 i~li~aPtrela~QI~r~~~kf~k~-l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~ 518 (997)
T KOG0334|consen 440 IALILAPTRELAMQIHREVRKFLKL-LGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTY 518 (997)
T ss_pred eEEEEcCCHHHHHHHHHHHHHHHhh-cCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccce
Confidence 9999999999999999999999986 89999999999999999999999999999999999998866444 4555669
Q ss_pred EEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCC
Q 008605 424 AILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503 (560)
Q Consensus 424 LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~ 503 (560)
+|+||||+|+ +++|.+++..|+..+++.+|+++||||+|..+.....+.+..+..++..........+.+.+..|..+
T Consensus 519 lv~deaDrmf-dmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e- 596 (997)
T KOG0334|consen 519 LVLDEADRMF-DMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIE- 596 (997)
T ss_pred eeechhhhhh-eeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCc-
Confidence 9999999999 99999999999999999999999999999998888778887777777677778888899999888854
Q ss_pred CCCCChhhhhhhHHHHHHHHHHhC-CCCcEEEEeCchHHHHHHHHHHHhhc
Q 008605 504 ESDKTPETAFLNKKSALLQLIEKS-PVSKTIVFCNKVCFSYKCNNLFGFFS 553 (560)
Q Consensus 504 ~~~~~~~~~~~~K~~~L~~lL~~~-~~~ktIIFcnS~~~a~~la~~Lk~l~ 553 (560)
.+|+..|.++|... ...++||||.+...|..+.+.|.+.+
T Consensus 597 ----------~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag 637 (997)
T KOG0334|consen 597 ----------NEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAG 637 (997)
T ss_pred ----------hHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcC
Confidence 37888888888763 46899999999999999999998653
No 27
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=6.3e-36 Score=319.86 Aligned_cols=263 Identities=25% Similarity=0.388 Sum_probs=226.3
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCE
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 347 (560)
.+|+++++++.++++|..+||..|+++|.++|+.+++|+|++++||||||||++|++|+++.+... ..+.+
T Consensus 28 ~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~---------~~~~~ 98 (401)
T PTZ00424 28 DSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD---------LNACQ 98 (401)
T ss_pred CCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC---------CCCce
Confidence 689999999999999999999999999999999999999999999999999999999999876421 34678
Q ss_pred EEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEc
Q 008605 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427 (560)
Q Consensus 348 aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViD 427 (560)
+|||+||++|+.|+.+.++.++.. ..+.+..+.|+.....+...+..+++|+|+||++|.+++.++...+.++++||||
T Consensus 99 ~lil~Pt~~L~~Q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViD 177 (401)
T PTZ00424 99 ALILAPTRELAQQIQKVVLALGDY-LKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILD 177 (401)
T ss_pred EEEECCCHHHHHHHHHHHHHHhhh-cCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEe
Confidence 999999999999999999988764 5677888899988888888888889999999999999998888889999999999
Q ss_pred cccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCCCCCC
Q 008605 428 EVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507 (560)
Q Consensus 428 Eah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~~~~ 507 (560)
|||+++ +.+|...+..+++.++...|++++|||+|..+......++.++..+...........+.++++.+...
T Consensus 178 Eah~~~-~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 251 (401)
T PTZ00424 178 EADEML-SRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKE----- 251 (401)
T ss_pred cHHHHH-hcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChH-----
Confidence 999999 77899899999999999999999999999998887777777666554443344455667776665432
Q ss_pred ChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhh
Q 008605 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFF 552 (560)
Q Consensus 508 ~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l 552 (560)
..+...+..++......++||||+++++|+.+++.|+..
T Consensus 252 ------~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~ 290 (401)
T PTZ00424 252 ------EWKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHER 290 (401)
T ss_pred ------HHHHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHC
Confidence 245677778887777789999999999999999999764
No 28
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-37 Score=314.34 Aligned_cols=264 Identities=25% Similarity=0.438 Sum_probs=228.5
Q ss_pred cccccc-CCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCC
Q 008605 268 KSFKEL-GCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (560)
Q Consensus 268 ~sF~~l-~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~ 346 (560)
-+|++. ...+++++++++.||.+|||||.+|||.+++|.|++++|+||+|||++|++|.+.++..... ......+|
T Consensus 219 ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~---~~~qr~~p 295 (629)
T KOG0336|consen 219 CTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPK---RREQRNGP 295 (629)
T ss_pred CcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccch---hhhccCCC
Confidence 467764 57899999999999999999999999999999999999999999999999999877754321 12346789
Q ss_pred EEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEE
Q 008605 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (560)
Q Consensus 347 ~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LVi 426 (560)
.+|+++|||+|+.|+.-++.++.- .+++..+++||....++.+.+..+++|+|+||++|.++...+.+++..+.|||+
T Consensus 296 ~~lvl~ptreLalqie~e~~kysy--ng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVl 373 (629)
T KOG0336|consen 296 GVLVLTPTRELALQIEGEVKKYSY--NGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVL 373 (629)
T ss_pred ceEEEeccHHHHHHHHhHHhHhhh--cCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEe
Confidence 999999999999999999988864 578999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCcc-ccCCCceeEEEEcCCCCCC
Q 008605 427 DEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMH-RISPGLEEFLVDCSGDQES 505 (560)
Q Consensus 427 DEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~-~~~~~i~~~~v~~~~~~~~ 505 (560)
||||+|+ |++|++++++|+-.+.+++|+++.|||||+.+..+...++.++.++....+. .....++|.++ +..+
T Consensus 374 DEADrML-DMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~-v~~d--- 448 (629)
T KOG0336|consen 374 DEADRML-DMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNII-VTTD--- 448 (629)
T ss_pred cchhhhh-cccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEE-eccc---
Confidence 9999999 9999999999999999999999999999999999999999988777655443 33445677664 3332
Q ss_pred CCChhhhhhhHHHHHHHHHHhC-CCCcEEEEeCchHHHHHHHHHH
Q 008605 506 DKTPETAFLNKKSALLQLIEKS-PVSKTIVFCNKVCFSYKCNNLF 549 (560)
Q Consensus 506 ~~~~~~~~~~K~~~L~~lL~~~-~~~ktIIFcnS~~~a~~la~~L 549 (560)
.+|+..+..++... ...++||||.++..|..|...|
T Consensus 449 --------~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~ 485 (629)
T KOG0336|consen 449 --------SEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDF 485 (629)
T ss_pred --------HHHHHHHHHHHHhcCCCceEEEEEechhhhhhccchh
Confidence 46777777777664 4679999999999988887766
No 29
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.5e-37 Score=310.60 Aligned_cols=274 Identities=23% Similarity=0.383 Sum_probs=243.6
Q ss_pred CCCCccccccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC--CcEEEEcCCCCcchhhcHHHHHHHHHHHHhhc
Q 008605 260 ADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG--KSCILADQSGSGKTLAYLLPVIQRLRQEELQG 337 (560)
Q Consensus 260 ~~~~~~~~~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g--~dvlv~apTGSGKTla~llpil~~l~~~~~~~ 337 (560)
.+.++++.++|++|+|.++++++|+.|+|.+|+.||..|+|.++.. +|+|..++.|+|||.||.|.+|.++.-.
T Consensus 82 pnsPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~---- 157 (477)
T KOG0332|consen 82 PNSPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD---- 157 (477)
T ss_pred CCCCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc----
Confidence 4567899999999999999999999999999999999999999975 6899999999999999999999887532
Q ss_pred cCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHh-ccc
Q 008605 338 LSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE-GIL 416 (560)
Q Consensus 338 ~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~-~~~ 416 (560)
...|+++.|+||||||.|+.+.+.+++++ .++...+..-+.....- .. -..+|+|+||+.+++++.. +.+
T Consensus 158 -----~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf-~~ita~yair~sk~~rG-~~--i~eqIviGTPGtv~Dlm~klk~i 228 (477)
T KOG0332|consen 158 -----VVVPQCICLAPTRELAPQTGEVVEEMGKF-TELTASYAIRGSKAKRG-NK--LTEQIVIGTPGTVLDLMLKLKCI 228 (477)
T ss_pred -----ccCCCceeeCchHHHHHHHHHHHHHhcCc-eeeeEEEEecCcccccC-Cc--chhheeeCCCccHHHHHHHHHhh
Confidence 46789999999999999999999999987 37787777766522110 00 1258999999999999988 889
Q ss_pred cCCCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEE
Q 008605 417 QLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFL 496 (560)
Q Consensus 417 ~l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~ 496 (560)
.+..++.+|+||||.|++..||.++-.+|...+|.++|+++||||+.+.+..+..+.++++..++.........+|+|+|
T Consensus 229 d~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQly 308 (477)
T KOG0332|consen 229 DLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLY 308 (477)
T ss_pred ChhhceEEEecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhhe
Confidence 99999999999999999778899999999999999999999999999999999999999988887777778888999999
Q ss_pred EEcCCCCCCCCChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhhccccc
Q 008605 497 VDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFFSEIRN 557 (560)
Q Consensus 497 v~~~~~~~~~~~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l~~~~~ 557 (560)
+.|..++ +|+++|.+++.-...+++||||.|++.|.+++..|+..++...
T Consensus 309 v~C~~~~-----------~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~ 358 (477)
T KOG0332|consen 309 VLCACRD-----------DKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVS 358 (477)
T ss_pred eeccchh-----------hHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeE
Confidence 9999863 8999999999888889999999999999999999999987653
No 30
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-36 Score=317.52 Aligned_cols=272 Identities=27% Similarity=0.442 Sum_probs=213.6
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC-CcEEEEcCCCCcchhhcHHHHHHHHHHHHh--hccCCCC
Q 008605 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG-KSCILADQSGSGKTLAYLLPVIQRLRQEEL--QGLSKST 342 (560)
Q Consensus 266 ~~~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g-~dvlv~apTGSGKTla~llpil~~l~~~~~--~~~~~~~ 342 (560)
....|.+|+|+..++++|..+||..||+||...||++..| .|++..|.|||||||||-+|++..+.+... +.+....
T Consensus 179 DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~ 258 (731)
T KOG0347|consen 179 DVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTS 258 (731)
T ss_pred ChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHH
Confidence 3456999999999999999999999999999999999999 699999999999999999999996654210 1111122
Q ss_pred CC--CCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccc---c
Q 008605 343 SG--SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGIL---Q 417 (560)
Q Consensus 343 ~~--~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~---~ 417 (560)
.. .+.+||++||||||.|+.+.+..+..+ .++++..++||.....|.+.+...++|+|+|||||+.++..+.. .
T Consensus 259 ~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~-t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~ 337 (731)
T KOG0347|consen 259 AKYVKPIALVVTPTRELAHQVKQHLKAIAEK-TQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGN 337 (731)
T ss_pred hccCcceeEEecChHHHHHHHHHHHHHhccc-cCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhh
Confidence 23 345999999999999999999999885 89999999999999999999999999999999999999987544 5
Q ss_pred CCCccEEEEccccccCCCCChHHHHHHHHhhCC-----CCCcEEEEeccCCHH---------------------HHHHHH
Q 008605 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSP-----VTAQYLFVTATLPVE---------------------IYNKLV 471 (560)
Q Consensus 418 l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~-----~~~Q~IllSATlp~~---------------------v~~~l~ 471 (560)
+..+++||+||+|+|+ ..++-..+..|++.+. ..+|+++||||+.-. +..++.
T Consensus 338 ~k~vkcLVlDEaDRmv-ekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk 416 (731)
T KOG0347|consen 338 FKKVKCLVLDEADRMV-EKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMK 416 (731)
T ss_pred hhhceEEEEccHHHHh-hhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHH
Confidence 7789999999999999 6676677777777664 468999999998322 111121
Q ss_pred Hh--CCCCeEEeCCCccccCCCceeEEEEcCCCCCCCCChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHH
Q 008605 472 EV--FPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLF 549 (560)
Q Consensus 472 ~~--~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~L 549 (560)
+. ...+.++-......+...+....+.|+.. +|-..|+-+|..++ +++|||||++..+.+++-+|
T Consensus 417 ~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~------------eKD~ylyYfl~ryP-GrTlVF~NsId~vKRLt~~L 483 (731)
T KOG0347|consen 417 KIGFRGKPKIIDLTPQSATASTLTESLIECPPL------------EKDLYLYYFLTRYP-GRTLVFCNSIDCVKRLTVLL 483 (731)
T ss_pred HhCccCCCeeEecCcchhHHHHHHHHhhcCCcc------------ccceeEEEEEeecC-CceEEEechHHHHHHHHHHH
Confidence 11 12334443333444555566666666553 45566666776766 68999999999999999999
Q ss_pred Hhh
Q 008605 550 GFF 552 (560)
Q Consensus 550 k~l 552 (560)
+.+
T Consensus 484 ~~L 486 (731)
T KOG0347|consen 484 NNL 486 (731)
T ss_pred hhc
Confidence 876
No 31
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.6e-36 Score=304.45 Aligned_cols=265 Identities=29% Similarity=0.438 Sum_probs=240.3
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCE
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 347 (560)
-.|+.|||...+++++.+.||..|||+|+..||.++.|+|++..|.||||||.||++|+++++... ...+.+
T Consensus 21 g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~--------s~~g~R 92 (529)
T KOG0337|consen 21 GGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSH--------SQTGLR 92 (529)
T ss_pred CCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhc--------cccccc
Confidence 479999999999999999999999999999999999999999999999999999999999998764 256789
Q ss_pred EEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEc
Q 008605 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427 (560)
Q Consensus 348 aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViD 427 (560)
+++++|||+|+.|+.+.++.+++ +.++++.+++||....+++..+..++|||++||++++.+.-.-.+.|+.+.|+|+|
T Consensus 93 alilsptreLa~qtlkvvkdlgr-gt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfd 171 (529)
T KOG0337|consen 93 ALILSPTRELALQTLKVVKDLGR-GTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFD 171 (529)
T ss_pred eeeccCcHHHHHHHHHHHHHhcc-ccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeeh
Confidence 99999999999999999999998 48899999999999999999999899999999999998877766889999999999
Q ss_pred cccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCCCCCC
Q 008605 428 EVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507 (560)
Q Consensus 428 Eah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~~~~ 507 (560)
|+|.++ .++|..++..++..++..+|+++||||+|..+..+....+.++..+-.+-...+...++..+..+..
T Consensus 172 Eadrlf-emgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~------ 244 (529)
T KOG0337|consen 172 EADRLF-EMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRK------ 244 (529)
T ss_pred hhhHHH-hhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeecc------
Confidence 999999 8999999999999999999999999999999999999888887777655556677777777777766
Q ss_pred ChhhhhhhHHHHHHHHHHhCC-CCcEEEEeCchHHHHHHHHHHHhhcc
Q 008605 508 TPETAFLNKKSALLQLIEKSP-VSKTIVFCNKVCFSYKCNNLFGFFSE 554 (560)
Q Consensus 508 ~~~~~~~~K~~~L~~lL~~~~-~~ktIIFcnS~~~a~~la~~Lk~l~~ 554 (560)
.+|..+|..++...- .++++|||.|+..++.+...|+..+-
T Consensus 245 ------a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~ 286 (529)
T KOG0337|consen 245 ------AEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGG 286 (529)
T ss_pred ------HHHHHHHHHHHhccccccceeEEecccchHHHHHHHHHhcCC
Confidence 378899999987753 46899999999999999999987653
No 32
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=1.7e-35 Score=314.08 Aligned_cols=272 Identities=25% Similarity=0.379 Sum_probs=245.3
Q ss_pred cccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCC
Q 008605 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (560)
Q Consensus 267 ~~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~ 346 (560)
...|++|.|...++.+|+..+|..||++|..|||+++.+.|+||.|..|+|||++|.+.+++.+.. ....+
T Consensus 24 ~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~---------~~~~~ 94 (980)
T KOG4284|consen 24 TPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDS---------RSSHI 94 (980)
T ss_pred CCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCc---------ccCcc
Confidence 368999999999999999999999999999999999999999999999999999999999887753 35678
Q ss_pred EEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEE
Q 008605 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (560)
Q Consensus 347 ~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LVi 426 (560)
+++||+||||+|.||.+.+.+++....++++.++.||+.......+++. ++|+|+||||+.+++..+.++.+.++++|+
T Consensus 95 q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~-~rIvIGtPGRi~qL~el~~~n~s~vrlfVL 173 (980)
T KOG4284|consen 95 QKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQ-TRIVIGTPGRIAQLVELGAMNMSHVRLFVL 173 (980)
T ss_pred eeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhh-ceEEecCchHHHHHHHhcCCCccceeEEEe
Confidence 9999999999999999999999886688999999999998877777654 899999999999999999999999999999
Q ss_pred ccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCCCCC
Q 008605 427 DEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506 (560)
Q Consensus 427 DEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~~~ 506 (560)
||||.|++...|..++..|+..+|..+|+++||||.|..+.+.|.+++.++..+.........-.|+|+++..+...
T Consensus 174 DEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~n--- 250 (980)
T KOG4284|consen 174 DEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPN--- 250 (980)
T ss_pred ccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCc---
Confidence 99999995578999999999999999999999999999999999999999888776666667778999988877642
Q ss_pred CChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhh
Q 008605 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFF 552 (560)
Q Consensus 507 ~~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l 552 (560)
.....+..|++.|-++++..+..+.||||+....|+-++..|+.-
T Consensus 251 -nsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ss 295 (980)
T KOG4284|consen 251 -NSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSS 295 (980)
T ss_pred -chHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhcc
Confidence 223345679999999999999999999999999999999999754
No 33
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.6e-35 Score=295.99 Aligned_cols=261 Identities=23% Similarity=0.416 Sum_probs=234.5
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCE
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 347 (560)
.+|++|+|+++|+++++..||++|+.||++||..+..|.|+++.+++|+|||.+|.+++++.+... .....
T Consensus 26 dsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~---------~ke~q 96 (397)
T KOG0327|consen 26 DSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMS---------VKETQ 96 (397)
T ss_pred hhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcc---------hHHHH
Confidence 689999999999999999999999999999999999999999999999999999999999987432 33557
Q ss_pred EEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhc-CCCcEEEECHHHHHHHHHhccccCCCccEEEE
Q 008605 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ-EGVDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (560)
Q Consensus 348 aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~-~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LVi 426 (560)
||+++|||+||.|+..+.+.++.+ .++++..+.||.....+...+. ..++|+|+||+++.++++.+.+....++++|+
T Consensus 97 alilaPtreLa~qi~~v~~~lg~~-~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvl 175 (397)
T KOG0327|consen 97 ALILAPTRELAQQIQKVVRALGDH-MDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVL 175 (397)
T ss_pred HHHhcchHHHHHHHHHHHHhhhcc-cceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEee
Confidence 999999999999999999999875 6789999999988875554444 56899999999999999999888888999999
Q ss_pred ccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCCCCC
Q 008605 427 DEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506 (560)
Q Consensus 427 DEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~~~ 506 (560)
||||.|+ ..+|...+..|++.++.+.|++++|||+|.++.+.-.+++.+++.+.......+...++|+++.+..+
T Consensus 176 DEaDEmL-s~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~---- 250 (397)
T KOG0327|consen 176 DEADEML-SRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKE---- 250 (397)
T ss_pred cchHhhh-ccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeecccc----
Confidence 9999999 78999999999999999999999999999999998888888888888777778888899999988764
Q ss_pred CChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhhc
Q 008605 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFFS 553 (560)
Q Consensus 507 ~~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l~ 553 (560)
.|+..|..+++ ...+.+||||++..+..+...|...+
T Consensus 251 --------~k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~~ 287 (397)
T KOG0327|consen 251 --------EKLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAHG 287 (397)
T ss_pred --------ccccHHHHHHH--hhhcceEEecchhhHHHHHHHHhhCC
Confidence 38899999988 45799999999999999999995543
No 34
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-33 Score=273.00 Aligned_cols=253 Identities=23% Similarity=0.372 Sum_probs=227.3
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCE
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 347 (560)
.-|.++-|.+++++++-..||.+|+.+|.++||...-|.|+++.|.+|.|||.+|.+..++.+. .......
T Consensus 42 sgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqie---------pv~g~vs 112 (387)
T KOG0329|consen 42 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIE---------PVDGQVS 112 (387)
T ss_pred cchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcC---------CCCCeEE
Confidence 4699999999999999999999999999999999999999999999999999999999998874 2244667
Q ss_pred EEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEc
Q 008605 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427 (560)
Q Consensus 348 aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViD 427 (560)
++++|.|||||-||.+++..+.+|.+++++.+++||.........+.+-++|+|+||++++.+.+++.+.+++++++|+|
T Consensus 113 vlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlD 192 (387)
T KOG0329|consen 113 VLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLD 192 (387)
T ss_pred EEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehh
Confidence 99999999999999999999999999999999999999988888888889999999999999999999999999999999
Q ss_pred cccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCC-ccccCCCceeEEEEcCCCCCCC
Q 008605 428 EVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPG-MHRISPGLEEFLVDCSGDQESD 506 (560)
Q Consensus 428 Eah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~-~~~~~~~i~~~~v~~~~~~~~~ 506 (560)
|||.|+++...+..++.|++..|...|+++||||++.++.....+++.++..++.+. ...+...+.|+|+.+..
T Consensus 193 Ecdkmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke----- 267 (387)
T KOG0329|consen 193 ECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKE----- 267 (387)
T ss_pred hHHHHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhh-----
Confidence 999999777899999999999999999999999999999888888888866665554 44566778888887765
Q ss_pred CChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHH
Q 008605 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCF 541 (560)
Q Consensus 507 ~~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~ 541 (560)
.+|...|.++|......+++||+.|+.+
T Consensus 268 -------~eKNrkl~dLLd~LeFNQVvIFvKsv~R 295 (387)
T KOG0329|consen 268 -------NEKNRKLNDLLDVLEFNQVVIFVKSVQR 295 (387)
T ss_pred -------hhhhhhhhhhhhhhhhcceeEeeehhhh
Confidence 3566778888887788899999998776
No 35
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=3.9e-31 Score=301.99 Aligned_cols=258 Identities=19% Similarity=0.189 Sum_probs=189.8
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCC
Q 008605 275 CSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPT 354 (560)
Q Consensus 275 L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~Pt 354 (560)
|++.+.++|.+.||..|+++|.++|+.++.|+|+++++|||||||+||++|+++.+... .++++|||+||
T Consensus 21 l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~----------~~~~aL~l~Pt 90 (742)
T TIGR03817 21 AHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD----------PRATALYLAPT 90 (742)
T ss_pred CCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC----------CCcEEEEEcCh
Confidence 88999999999999999999999999999999999999999999999999999988642 35789999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHh-c---cccCCCccEEEEcccc
Q 008605 355 AELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE-G---ILQLINLRCAILDEVD 430 (560)
Q Consensus 355 reLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~-~---~~~l~~l~~LViDEah 430 (560)
|||++|+++.++++.. .++++..+.|+... .+...+..+++|+|+||++|...+.. . ...++++++|||||||
T Consensus 91 raLa~q~~~~l~~l~~--~~i~v~~~~Gdt~~-~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah 167 (742)
T TIGR03817 91 KALAADQLRAVRELTL--RGVRPATYDGDTPT-EERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECH 167 (742)
T ss_pred HHHHHHHHHHHHHhcc--CCeEEEEEeCCCCH-HHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChh
Confidence 9999999999999862 46888877777764 44456667799999999999753321 1 1237899999999999
Q ss_pred ccCCCCChHHHHHHHHh-------hCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCC
Q 008605 431 ILFNDEDFEVALQSLIS-------SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503 (560)
Q Consensus 431 ~ll~d~~f~~~l~~Il~-------~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~ 503 (560)
.|. + .|+..+..+++ ..+.++|++++|||++.... .+..++..+..++... .. +....+..+......
T Consensus 168 ~~~-g-~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~i~~~-~~-~~~~~~~~~~~p~~~ 242 (742)
T TIGR03817 168 SYR-G-VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVAVTED-GS-PRGARTVALWEPPLT 242 (742)
T ss_pred hcc-C-ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEEECCC-CC-CcCceEEEEecCCcc
Confidence 997 4 46655444433 34567899999999987753 4556666554443321 11 122222222222100
Q ss_pred CC-----CCChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhh
Q 008605 504 ES-----DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFF 552 (560)
Q Consensus 504 ~~-----~~~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l 552 (560)
.. .........++...|..++.. ..++||||||++.|+.++..|+..
T Consensus 243 ~~~~~~~~~~r~~~~~~~~~~l~~l~~~--~~~~IVF~~sr~~ae~l~~~l~~~ 294 (742)
T TIGR03817 243 ELTGENGAPVRRSASAEAADLLADLVAE--GARTLTFVRSRRGAELVAAIARRL 294 (742)
T ss_pred ccccccccccccchHHHHHHHHHHHHHC--CCCEEEEcCCHHHHHHHHHHHHHH
Confidence 00 000011223566777777765 379999999999999999998764
No 36
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.98 E-value=1.8e-31 Score=277.67 Aligned_cols=266 Identities=25% Similarity=0.346 Sum_probs=204.8
Q ss_pred ccccccCCCHHH----------HHHHHHCCCCCChHHHHHHHHHHH---------cCCcEEEEcCCCCcchhhcHHHHHH
Q 008605 268 KSFKELGCSDYM----------IESLKRQNFLRPSQIQAMAFPPVV---------EGKSCILADQSGSGKTLAYLLPVIQ 328 (560)
Q Consensus 268 ~sF~~l~L~~~l----------l~~L~~~g~~~pt~iQ~~aip~il---------~g~dvlv~apTGSGKTla~llpil~ 328 (560)
.-|+.+++++.+ ..+|.++++....|+|...+|.++ .++|+.|.||||||||++|.+||++
T Consensus 127 q~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ 206 (620)
T KOG0350|consen 127 QIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQ 206 (620)
T ss_pred eeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHH
Confidence 346667666544 445899999999999999999985 2579999999999999999999999
Q ss_pred HHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcC-----CCcEEEEC
Q 008605 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQE-----GVDVLIAT 403 (560)
Q Consensus 329 ~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~-----~~~IlV~T 403 (560)
.+.... .+..+||||+||++|+.|+++.|..+.. +.++.|+.+.|........+.+.. ..||+|+|
T Consensus 207 ~L~~R~--------v~~LRavVivPtr~L~~QV~~~f~~~~~-~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaT 277 (620)
T KOG0350|consen 207 LLSSRP--------VKRLRAVVIVPTRELALQVYDTFKRLNS-GTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVAT 277 (620)
T ss_pred HHccCC--------ccceEEEEEeeHHHHHHHHHHHHHHhcc-CCceEEEecccccchHHHHHHHhcCCCccccceEEcC
Confidence 987653 3456899999999999999999999987 588999999999888777777743 24899999
Q ss_pred HHHHHHHHHh-ccccCCCccEEEEccccccCCCCChHHHHHHHHhhC---------------------------------
Q 008605 404 PGRFMFLIKE-GILQLINLRCAILDEVDILFNDEDFEVALQSLISSS--------------------------------- 449 (560)
Q Consensus 404 P~~L~~ll~~-~~~~l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~--------------------------------- 449 (560)
||||.+++++ ..+.|++++|+||||||+|+ +..|..-+-.+...+
T Consensus 278 PGRLVDHl~~~k~f~Lk~LrfLVIDEADRll-~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~ 356 (620)
T KOG0350|consen 278 PGRLVDHLNNTKSFDLKHLRFLVIDEADRLL-DQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGK 356 (620)
T ss_pred chHHHHhccCCCCcchhhceEEEechHHHHH-HHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCC
Confidence 9999999985 77899999999999999998 554443333222211
Q ss_pred -CCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCC----CccccCCCceeEEEEcCCCCCCCCChhhhhhhHHHHHHHHH
Q 008605 450 -PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGP----GMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLI 524 (560)
Q Consensus 450 -~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~----~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~K~~~L~~lL 524 (560)
.+..+.+++|||+...-.....-.+..+..+... ....++..+.+..+.+... .|.-.++.++
T Consensus 357 ~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~------------~kpl~~~~lI 424 (620)
T KOG0350|consen 357 LYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPK------------FKPLAVYALI 424 (620)
T ss_pred cCchhHhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccc------------cchHhHHHHH
Confidence 1234688899998533322222233344333222 4567777888888877652 5667889999
Q ss_pred HhCCCCcEEEEeCchHHHHHHHHHHH-hhccc
Q 008605 525 EKSPVSKTIVFCNKVCFSYKCNNLFG-FFSEI 555 (560)
Q Consensus 525 ~~~~~~ktIIFcnS~~~a~~la~~Lk-~l~~~ 555 (560)
......++|||+||...+.+++..|+ .++..
T Consensus 425 ~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~ 456 (620)
T KOG0350|consen 425 TSNKLNRTLCFVNSVSSANRLAHVLKVEFCSD 456 (620)
T ss_pred HHhhcceEEEEecchHHHHHHHHHHHHHhccc
Confidence 88888999999999999999999998 55544
No 37
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.97 E-value=4.9e-30 Score=248.85 Aligned_cols=202 Identities=33% Similarity=0.584 Sum_probs=182.0
Q ss_pred ccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEE
Q 008605 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVV 349 (560)
Q Consensus 270 F~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aL 349 (560)
|+++++++.+.+.|.++|+..|+++|.++++.+.+|+|+++++|||+|||++|++|++..+.... ...++++|
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~-------~~~~~~vi 73 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP-------KKDGPQAL 73 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc-------ccCCceEE
Confidence 78899999999999999999999999999999999999999999999999999999999887641 13578999
Q ss_pred EEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccc
Q 008605 350 ILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEV 429 (560)
Q Consensus 350 il~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEa 429 (560)
|++|+++|+.|+...++.+... .++.+..++|+.........+..+++|+|+||++|..++.+....+.+++++|+||+
T Consensus 74 ii~p~~~L~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~ 152 (203)
T cd00268 74 ILAPTRELALQIAEVARKLGKH-TNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEA 152 (203)
T ss_pred EEcCCHHHHHHHHHHHHHHhcc-CCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeCh
Confidence 9999999999999999998764 578889999998887777777678999999999999999888788899999999999
Q ss_pred cccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEE
Q 008605 430 DILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVV 480 (560)
Q Consensus 430 h~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i 480 (560)
|.+. +.++...+..++..++..+|++++|||+++.+..++...+.++..+
T Consensus 153 h~~~-~~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 153 DRML-DMGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred HHhh-ccChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 9998 7889999999999999899999999999999888888887766554
No 38
>PRK00254 ski2-like helicase; Provisional
Probab=99.97 E-value=4.7e-30 Score=293.93 Aligned_cols=253 Identities=23% Similarity=0.274 Sum_probs=193.8
Q ss_pred cccccCCCHHHHHHHHHCCCCCChHHHHHHHHH-HHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCE
Q 008605 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPP-VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (560)
Q Consensus 269 sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~-il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 347 (560)
+|+++++++.+.+.|.+.||..|+|+|.++++. ++.|+|+++++|||||||++|.+|++..+... +.+
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~-----------~~~ 70 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE-----------GGK 70 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc-----------CCe
Confidence 589999999999999999999999999999986 78999999999999999999999999887532 458
Q ss_pred EEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEc
Q 008605 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427 (560)
Q Consensus 348 aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViD 427 (560)
+|||+|+++|+.|+++.++.+.. .++++..++|+......+ ...++|+|+||+++..+++++...++++++||||
T Consensus 71 ~l~l~P~~aLa~q~~~~~~~~~~--~g~~v~~~~Gd~~~~~~~---~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViD 145 (720)
T PRK00254 71 AVYLVPLKALAEEKYREFKDWEK--LGLRVAMTTGDYDSTDEW---LGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVAD 145 (720)
T ss_pred EEEEeChHHHHHHHHHHHHHHhh--cCCEEEEEeCCCCCchhh---hccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEc
Confidence 99999999999999999988754 468899999987654322 2458999999999999988776778999999999
Q ss_pred cccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeE-----EEEcCCC
Q 008605 428 EVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF-----LVDCSGD 502 (560)
Q Consensus 428 Eah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~-----~v~~~~~ 502 (560)
|+|.+. +.+++..++.++..+....|+|++|||++.. ..+.+|+....+. ......+ +... +......
T Consensus 146 E~H~l~-~~~rg~~le~il~~l~~~~qiI~lSATl~n~--~~la~wl~~~~~~--~~~rpv~--l~~~~~~~~~~~~~~~ 218 (720)
T PRK00254 146 EIHLIG-SYDRGATLEMILTHMLGRAQILGLSATVGNA--EELAEWLNAELVV--SDWRPVK--LRKGVFYQGFLFWEDG 218 (720)
T ss_pred CcCccC-CccchHHHHHHHHhcCcCCcEEEEEccCCCH--HHHHHHhCCcccc--CCCCCCc--ceeeEecCCeeeccCc
Confidence 999998 7789999999999998899999999999753 3455666543221 1111111 1111 1111110
Q ss_pred CCCCCChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHh
Q 008605 503 QESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGF 551 (560)
Q Consensus 503 ~~~~~~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~ 551 (560)
.....+ ......+.+++.. .+++||||||++.|+.++..|..
T Consensus 219 -~~~~~~----~~~~~~~~~~i~~--~~~vLVF~~sr~~~~~~a~~l~~ 260 (720)
T PRK00254 219 -KIERFP----NSWESLVYDAVKK--GKGALVFVNTRRSAEKEALELAK 260 (720)
T ss_pred -chhcch----HHHHHHHHHHHHh--CCCEEEEEcChHHHHHHHHHHHH
Confidence 000000 1222344555543 47999999999999999888854
No 39
>PRK02362 ski2-like helicase; Provisional
Probab=99.97 E-value=3.6e-30 Score=295.61 Aligned_cols=258 Identities=18% Similarity=0.230 Sum_probs=190.1
Q ss_pred cccccCCCHHHHHHHHHCCCCCChHHHHHHHHH-HHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCE
Q 008605 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPP-VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (560)
Q Consensus 269 sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~-il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 347 (560)
.|++++|++.++++|.+.||..|+|+|.+|++. ++.|+|++++||||||||++|.+|+++.+.. +.+
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~------------~~k 69 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR------------GGK 69 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc------------CCc
Confidence 589999999999999999999999999999998 7789999999999999999999999988742 457
Q ss_pred EEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEc
Q 008605 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427 (560)
Q Consensus 348 aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViD 427 (560)
+|||+|+++||.|+++.++.+.. .++++..++|+...... ....++|+|+||+++..++++....+.++++||||
T Consensus 70 al~i~P~raLa~q~~~~~~~~~~--~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViD 144 (737)
T PRK02362 70 ALYIVPLRALASEKFEEFERFEE--LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVD 144 (737)
T ss_pred EEEEeChHHHHHHHHHHHHHhhc--CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEE
Confidence 99999999999999999998754 36889999998765432 22458999999999999998766678999999999
Q ss_pred cccccCCCCChHHHHHHHHhhC---CCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCC---
Q 008605 428 EVDILFNDEDFEVALQSLISSS---PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSG--- 501 (560)
Q Consensus 428 Eah~ll~d~~f~~~l~~Il~~~---~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~--- 501 (560)
|+|++. +.+++..++.++..+ ....|+|++|||++.. +.+.+|+....+ ....... .+...+.....
T Consensus 145 E~H~l~-d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~--~~la~wl~~~~~--~~~~rpv--~l~~~v~~~~~~~~ 217 (737)
T PRK02362 145 EVHLID-SANRGPTLEVTLAKLRRLNPDLQVVALSATIGNA--DELADWLDAELV--DSEWRPI--DLREGVFYGGAIHF 217 (737)
T ss_pred CccccC-CCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCH--HHHHHHhCCCcc--cCCCCCC--CCeeeEecCCeecc
Confidence 999998 778888888776544 5679999999999753 234555543211 1111111 11111110000
Q ss_pred CCCCCCChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhh
Q 008605 502 DQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFF 552 (560)
Q Consensus 502 ~~~~~~~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l 552 (560)
.+................+.+.+. ..+++||||+|++.|+.++..|...
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~ 266 (737)
T PRK02362 218 DDSQREVEVPSKDDTLNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASA 266 (737)
T ss_pred ccccccCCCccchHHHHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHH
Confidence 000000000000123344444443 4579999999999999999999765
No 40
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.97 E-value=7.1e-29 Score=279.00 Aligned_cols=262 Identities=21% Similarity=0.253 Sum_probs=201.8
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCC
Q 008605 275 CSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPT 354 (560)
Q Consensus 275 L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~Pt 354 (560)
|++.+.+.++.. |..||+.|.+|||.+.+|+|+|++||||||||++++||++..+.+.. ......+..||||+|.
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~----~~~~~~~i~~lYIsPL 82 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLG----KGKLEDGIYALYISPL 82 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhcc----CCCCCCceEEEEeCcH
Confidence 789999999887 99999999999999999999999999999999999999999998762 2233457899999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhcc--ccCCCccEEEEcccccc
Q 008605 355 AELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGI--LQLINLRCAILDEVDIL 432 (560)
Q Consensus 355 reLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~--~~l~~l~~LViDEah~l 432 (560)
|+|.+++.+.++.++.. .++.+.+-+|+++..+..+...+.+||+|+|||.|.-++.... -.|.+++++||||+|.+
T Consensus 83 kALn~Di~~rL~~~~~~-~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel 161 (814)
T COG1201 83 KALNNDIRRRLEEPLRE-LGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHAL 161 (814)
T ss_pred HHHHHHHHHHHHHHHHH-cCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhh
Confidence 99999999999998874 7888899999999988888888999999999999988876533 25889999999999999
Q ss_pred CCCCC----hHHHHHHHHhhCCCCCcEEEEeccCC--HHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCCCCC
Q 008605 433 FNDED----FEVALQSLISSSPVTAQYLFVTATLP--VEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506 (560)
Q Consensus 433 l~d~~----f~~~l~~Il~~~~~~~Q~IllSATlp--~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~~~ 506 (560)
.+ .. ..-.++++....+ ..|.|++|||.. .++.+++...-..+.++.... ....+..++....+....
T Consensus 162 ~~-sKRG~~Lsl~LeRL~~l~~-~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~----~k~~~i~v~~p~~~~~~~ 235 (814)
T COG1201 162 AE-SKRGVQLALSLERLRELAG-DFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSA----AKKLEIKVISPVEDLIYD 235 (814)
T ss_pred hc-cccchhhhhhHHHHHhhCc-ccEEEeehhccCCHHHHHHHhcCCCCceEEEEccc----CCcceEEEEecCCccccc
Confidence 83 33 4555667766666 899999999995 333333322222334443222 122333333322210000
Q ss_pred CChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhhc
Q 008605 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFFS 553 (560)
Q Consensus 507 ~~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l~ 553 (560)
.......+..+.++++++ ..+|||+||+..++.++..|+++.
T Consensus 236 ---~~~~~~~~~~i~~~v~~~--~ttLIF~NTR~~aE~l~~~L~~~~ 277 (814)
T COG1201 236 ---EELWAALYERIAELVKKH--RTTLIFTNTRSGAERLAFRLKKLG 277 (814)
T ss_pred ---cchhHHHHHHHHHHHhhc--CcEEEEEeChHHHHHHHHHHHHhc
Confidence 112234667777888777 589999999999999999999875
No 41
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.96 E-value=2.1e-28 Score=284.44 Aligned_cols=267 Identities=21% Similarity=0.213 Sum_probs=183.0
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCC
Q 008605 275 CSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPT 354 (560)
Q Consensus 275 L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~Pt 354 (560)
|++.+.+.+.+ +|..|+|+|.+||+.+++|+|++++||||||||++|++|+++.+...... .....++++|||+||
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~---~~~~~~~~~LyIsPt 93 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGRE---GELEDKVYCLYVSPL 93 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccc---cCCCCCeEEEEEcCH
Confidence 56777776665 89999999999999999999999999999999999999999988753211 111357889999999
Q ss_pred HHHHHHHHHHHHh-------hh----cCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccc--cCCCc
Q 008605 355 AELASQVLSNCRS-------LS----KCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGIL--QLINL 421 (560)
Q Consensus 355 reLa~Qi~~~l~~-------l~----~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~--~l~~l 421 (560)
++|++|+++.+.. +. ....++++...+|+.....+.+.+.+.++|+|+||++|..++....+ .+.++
T Consensus 94 raLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l 173 (876)
T PRK13767 94 RALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTV 173 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcC
Confidence 9999999886653 21 11126789999999988887777778899999999999888765433 57899
Q ss_pred cEEEEccccccCCCCChHHH----HHHHHhhCCCCCcEEEEeccCCH--HHHHHHHHhC----CCCeEEeCCCccccCCC
Q 008605 422 RCAILDEVDILFNDEDFEVA----LQSLISSSPVTAQYLFVTATLPV--EIYNKLVEVF----PDCKVVMGPGMHRISPG 491 (560)
Q Consensus 422 ~~LViDEah~ll~d~~f~~~----l~~Il~~~~~~~Q~IllSATlp~--~v~~~l~~~~----~~~~~i~~~~~~~~~~~ 491 (560)
++|||||+|.+. +..++.. ++++....+...|+|++|||+++ .+..++.... .....+..... ...
T Consensus 174 ~~VVIDE~H~l~-~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~---~k~ 249 (876)
T PRK13767 174 KWVIVDEIHSLA-ENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARF---VKP 249 (876)
T ss_pred CEEEEechhhhc-cCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCC---Ccc
Confidence 999999999998 5554444 45555555567899999999975 3333332211 11112221110 011
Q ss_pred ceeEEEEcCCCCCCCCChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhh
Q 008605 492 LEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFF 552 (560)
Q Consensus 492 i~~~~v~~~~~~~~~~~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l 552 (560)
+... +.++..+................|.++++. .+++||||||+..|+.++..|+..
T Consensus 250 ~~i~-v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~--~~~~LVF~nTr~~ae~la~~L~~~ 307 (876)
T PRK13767 250 FDIK-VISPVDDLIHTPAEEISEALYETLHELIKE--HRTTLIFTNTRSGAERVLYNLRKR 307 (876)
T ss_pred ceEE-EeccCccccccccchhHHHHHHHHHHHHhc--CCCEEEEeCCHHHHHHHHHHHHHh
Confidence 1111 111111000000111112334455555544 368999999999999999999874
No 42
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.96 E-value=4.6e-28 Score=273.80 Aligned_cols=240 Identities=15% Similarity=0.124 Sum_probs=173.8
Q ss_pred CCCCCChHHHHHHHHHHHcCC-cEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEE-EcCCHHHHHHHHH
Q 008605 286 QNFLRPSQIQAMAFPPVVEGK-SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVI-LAPTAELASQVLS 363 (560)
Q Consensus 286 ~g~~~pt~iQ~~aip~il~g~-dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLi-l~PtreLa~Qi~~ 363 (560)
.||. |||||.++||.++.|+ ++++.+|||||||.+|.++++... . ....++.|| ++|||+||.|+++
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~-~---------~~~~~~rLv~~vPtReLa~Qi~~ 80 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVE-I---------GAKVPRRLVYVVNRRTVVDQVTE 80 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhcccc-c---------cccccceEEEeCchHHHHHHHHH
Confidence 4898 9999999999999998 577789999999997765555321 1 123455555 7799999999999
Q ss_pred HHHhhhcCC----------------------CCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccc-----
Q 008605 364 NCRSLSKCG----------------------VPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGIL----- 416 (560)
Q Consensus 364 ~l~~l~~~~----------------------~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~----- 416 (560)
.++++++.. ..+++.+++||.....++..+..+++|||+|++.+ .++.+
T Consensus 81 ~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i----~sr~L~~gYg 156 (844)
T TIGR02621 81 EAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMI----GSRLLFSGYG 156 (844)
T ss_pred HHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHH----cCCccccccc
Confidence 999987632 24889999999999999999999999999996544 33333
Q ss_pred -----------cCCCccEEEEccccccCCCCChHHHHHHHHhhC--CC---CCcEEEEeccCCHHHHHHHHHhCCCCeEE
Q 008605 417 -----------QLINLRCAILDEVDILFNDEDFEVALQSLISSS--PV---TAQYLFVTATLPVEIYNKLVEVFPDCKVV 480 (560)
Q Consensus 417 -----------~l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~--~~---~~Q~IllSATlp~~v~~~l~~~~~~~~~i 480 (560)
.+.++++||||||| + +++|...+..|++.+ +. .+|+++||||+|.++.........+...+
T Consensus 157 ~~~~~~pi~ag~L~~v~~LVLDEAD--L-d~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i 233 (844)
T TIGR02621 157 CGFKSRPLHAGFLGQDALIVHDEAH--L-EPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKH 233 (844)
T ss_pred cccccccchhhhhccceEEEEehhh--h-ccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCcee
Confidence 27889999999999 4 689999999999964 33 26999999999987766555555444333
Q ss_pred eCCCccccCCCceeEEEEcCCCCCCCCChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhhc
Q 008605 481 MGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFFS 553 (560)
Q Consensus 481 ~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l~ 553 (560)
...........+.++ +.+.... ....+...|..++. ...+++||||||+++|+.+++.|+..+
T Consensus 234 ~V~~~~l~a~ki~q~-v~v~~e~--------Kl~~lv~~L~~ll~-e~g~~vLVF~NTv~~Aq~L~~~L~~~g 296 (844)
T TIGR02621 234 PVLKKRLAAKKIVKL-VPPSDEK--------FLSTMVKELNLLMK-DSGGAILVFCRTVKHVRKVFAKLPKEK 296 (844)
T ss_pred ecccccccccceEEE-EecChHH--------HHHHHHHHHHHHHh-hCCCcEEEEECCHHHHHHHHHHHHhcC
Confidence 333233333445553 3332210 01122233333333 345789999999999999999998643
No 43
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=7.5e-29 Score=263.56 Aligned_cols=271 Identities=25% Similarity=0.333 Sum_probs=219.9
Q ss_pred cccccc----cCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCC
Q 008605 267 RKSFKE----LGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKST 342 (560)
Q Consensus 267 ~~sF~~----l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~ 342 (560)
..+|.+ ..++..+++.+...+|..|+|+|.+|+|.++.+++++.|||||||||++|.+|+++++..... ...
T Consensus 131 l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~----~~~ 206 (593)
T KOG0344|consen 131 LLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQ----EKH 206 (593)
T ss_pred cccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhc----ccC
Confidence 467887 468899999999999999999999999999999999999999999999999999999976532 133
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHhhhc-CCCCceEEEEeCCcch-HHHHHHhcCCCcEEEECHHHHHHHHHhcc--ccC
Q 008605 343 SGSPRVVILAPTAELASQVLSNCRSLSK-CGVPFRSMVVTGGFRQ-KTQLENLQEGVDVLIATPGRFMFLIKEGI--LQL 418 (560)
Q Consensus 343 ~~~~~aLil~PtreLa~Qi~~~l~~l~~-~~~~i~v~~l~gg~~~-~~~~~~l~~~~~IlV~TP~~L~~ll~~~~--~~l 418 (560)
..+-+++|+.|||+|+.|++.++.++.. .+..+++..+...... ..........++|+|+||-++..++.... +.+
T Consensus 207 ~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl 286 (593)
T KOG0344|consen 207 KVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDL 286 (593)
T ss_pred ccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchh
Confidence 5678999999999999999999999972 1344454444333211 11111122347999999999999998865 789
Q ss_pred CCccEEEEccccccCCCCChHHHHHHHHhhCC-CCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEE
Q 008605 419 INLRCAILDEVDILFNDEDFEVALQSLISSSP-VTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLV 497 (560)
Q Consensus 419 ~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~-~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v 497 (560)
..|.++|+||+|++++...|..++..|+..+. ++..+-+||||++..+.+++.....+...+...........+.|..+
T Consensus 287 ~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~Qelv 366 (593)
T KOG0344|consen 287 SKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELV 366 (593)
T ss_pred heeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhhe
Confidence 99999999999999943389999999987764 56778899999999999998888877666655545556677899999
Q ss_pred EcCCCCCCCCChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhh
Q 008605 498 DCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFF 552 (560)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l 552 (560)
+|..+ ..|+-++.+++...-..++|||+.+.++|.+|...|..+
T Consensus 367 F~gse-----------~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~ 410 (593)
T KOG0344|consen 367 FCGSE-----------KGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIY 410 (593)
T ss_pred eeecc-----------hhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhc
Confidence 99875 378899999998876679999999999999999999633
No 44
>PRK01172 ski2-like helicase; Provisional
Probab=99.96 E-value=6.8e-28 Score=274.52 Aligned_cols=255 Identities=18% Similarity=0.233 Sum_probs=186.4
Q ss_pred cccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEE
Q 008605 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRV 348 (560)
Q Consensus 269 sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~a 348 (560)
.|++++|++.+++.+...+|. ++++|.++++.+.+|+|++++||||||||++|.++++..+.. +.++
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~------------~~k~ 68 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA------------GLKS 68 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh------------CCcE
Confidence 588999999999999999997 999999999999999999999999999999999999887643 3579
Q ss_pred EEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEcc
Q 008605 349 VILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDE 428 (560)
Q Consensus 349 Lil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDE 428 (560)
|||+|+++||.|+++.++++.. .++++...+|+...... ....++|+|+||+++..++++....+.++++||+||
T Consensus 69 v~i~P~raLa~q~~~~~~~l~~--~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDE 143 (674)
T PRK01172 69 IYIVPLRSLAMEKYEELSRLRS--LGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADE 143 (674)
T ss_pred EEEechHHHHHHHHHHHHHHhh--cCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEec
Confidence 9999999999999999988754 46788888887754332 124589999999999999888766789999999999
Q ss_pred ccccCCCCChHHHHHHHHhh---CCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCCCC
Q 008605 429 VDILFNDEDFEVALQSLISS---SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505 (560)
Q Consensus 429 ah~ll~d~~f~~~l~~Il~~---~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~~ 505 (560)
+|++. +.+++..++.++.. ++.+.|+|++|||++.. ..+.+|+....+. ......+ +...++...... .
T Consensus 144 aH~l~-d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~--~~la~wl~~~~~~--~~~r~vp--l~~~i~~~~~~~-~ 215 (674)
T PRK01172 144 IHIIG-DEDRGPTLETVLSSARYVNPDARILALSATVSNA--NELAQWLNASLIK--SNFRPVP--LKLGILYRKRLI-L 215 (674)
T ss_pred chhcc-CCCccHHHHHHHHHHHhcCcCCcEEEEeCccCCH--HHHHHHhCCCccC--CCCCCCC--eEEEEEecCeee-e
Confidence 99998 67788888877653 45688999999999753 3456666533221 1111111 121111111000 0
Q ss_pred CCChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhh
Q 008605 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFF 552 (560)
Q Consensus 506 ~~~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l 552 (560)
. ............+.+.+ ...+++||||+++++|+.++..|...
T Consensus 216 ~-~~~~~~~~~~~~i~~~~--~~~~~vLVF~~sr~~~~~~a~~L~~~ 259 (674)
T PRK01172 216 D-GYERSQVDINSLIKETV--NDGGQVLVFVSSRKNAEDYAEMLIQH 259 (674)
T ss_pred c-ccccccccHHHHHHHHH--hCCCcEEEEeccHHHHHHHHHHHHHh
Confidence 0 00000001112222222 23579999999999999999999764
No 45
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.96 E-value=4.1e-27 Score=257.40 Aligned_cols=232 Identities=15% Similarity=0.194 Sum_probs=168.5
Q ss_pred HCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHH
Q 008605 285 RQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (560)
Q Consensus 285 ~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~ 364 (560)
.+||..|+|+|.++|+++++|+|+++++|||+|||++|++|++.. +..+|||+|+++|+.|++..
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~---------------~~~~lVi~P~~~L~~dq~~~ 70 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS---------------DGITLVISPLISLMEDQVLQ 70 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc---------------CCcEEEEecHHHHHHHHHHH
Confidence 469999999999999999999999999999999999999998742 34699999999999999888
Q ss_pred HHhhhcCCCCceEEEEeCCcchHHHHH---Hh-cCCCcEEEECHHHHHHHH-Hhccc-cCCCccEEEEccccccCCCCC-
Q 008605 365 CRSLSKCGVPFRSMVVTGGFRQKTQLE---NL-QEGVDVLIATPGRFMFLI-KEGIL-QLINLRCAILDEVDILFNDED- 437 (560)
Q Consensus 365 l~~l~~~~~~i~v~~l~gg~~~~~~~~---~l-~~~~~IlV~TP~~L~~ll-~~~~~-~l~~l~~LViDEah~ll~d~~- 437 (560)
+..+ ++.+..+.++....++.. .+ ...++|+++||+++.... ....+ ...++++|||||||+++ +++
T Consensus 71 l~~~-----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~-~~g~ 144 (470)
T TIGR00614 71 LKAS-----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCIS-QWGH 144 (470)
T ss_pred HHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccC-cccc
Confidence 8754 456677777766543322 22 234899999999986422 11122 56789999999999998 554
Q ss_pred -hHHHHHHH--HhhCCCCCcEEEEeccCCHHHHHHHHHhCC--CCeEEeCCCccccCCCceeEEEEcCCCCCCCCChhhh
Q 008605 438 -FEVALQSL--ISSSPVTAQYLFVTATLPVEIYNKLVEVFP--DCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETA 512 (560)
Q Consensus 438 -f~~~l~~I--l~~~~~~~Q~IllSATlp~~v~~~l~~~~~--~~~~i~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~ 512 (560)
|...+..+ +....++.|++++|||+++.+...+.+.+. .+.++... ...+++...+....
T Consensus 145 ~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s---~~r~nl~~~v~~~~------------ 209 (470)
T TIGR00614 145 DFRPDYKALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTS---FDRPNLYYEVRRKT------------ 209 (470)
T ss_pred ccHHHHHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCC---CCCCCcEEEEEeCC------------
Confidence 77776655 222335789999999999988877777763 34433322 12233332222111
Q ss_pred hhhHHHHHHHHHH-hCCCCcEEEEeCchHHHHHHHHHHHhhc
Q 008605 513 FLNKKSALLQLIE-KSPVSKTIVFCNKVCFSYKCNNLFGFFS 553 (560)
Q Consensus 513 ~~~K~~~L~~lL~-~~~~~ktIIFcnS~~~a~~la~~Lk~l~ 553 (560)
......+..++. ..+.+.+||||+|+++|+.++..|+..+
T Consensus 210 -~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g 250 (470)
T TIGR00614 210 -PKILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLG 250 (470)
T ss_pred -ccHHHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcC
Confidence 134455666665 4556677999999999999999998653
No 46
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.95 E-value=5.2e-27 Score=269.01 Aligned_cols=249 Identities=18% Similarity=0.175 Sum_probs=180.4
Q ss_pred ccccccC--CCHHHHHHHHH-CCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCC
Q 008605 268 KSFKELG--CSDYMIESLKR-QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSG 344 (560)
Q Consensus 268 ~sF~~l~--L~~~ll~~L~~-~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~ 344 (560)
..|...+ ....+...++. +||..|+|+|.++|++++.|+|+|+++|||+|||+||++|++..
T Consensus 435 ~~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~--------------- 499 (1195)
T PLN03137 435 KKWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC--------------- 499 (1195)
T ss_pred ccccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc---------------
Confidence 4566544 44667666654 69999999999999999999999999999999999999999842
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhc------CCCcEEEECHHHHHH--HHHhc--
Q 008605 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ------EGVDVLIATPGRFMF--LIKEG-- 414 (560)
Q Consensus 345 ~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~------~~~~IlV~TP~~L~~--ll~~~-- 414 (560)
...+|||+|+++|+.++...+.. .++.+..+.++....++...+. ..++|||+||++|.. .+.+.
T Consensus 500 ~GiTLVISPLiSLmqDQV~~L~~-----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~ 574 (1195)
T PLN03137 500 PGITLVISPLVSLIQDQIMNLLQ-----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLE 574 (1195)
T ss_pred CCcEEEEeCHHHHHHHHHHHHHh-----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHH
Confidence 24699999999999866555543 3578888999888766654443 358999999999862 22221
Q ss_pred -cccCCCccEEEEccccccCCCCC--hHHHHHHH--HhhCCCCCcEEEEeccCCHHHHHHHHHhCCC--CeEEeCCCccc
Q 008605 415 -ILQLINLRCAILDEVDILFNDED--FEVALQSL--ISSSPVTAQYLFVTATLPVEIYNKLVEVFPD--CKVVMGPGMHR 487 (560)
Q Consensus 415 -~~~l~~l~~LViDEah~ll~d~~--f~~~l~~I--l~~~~~~~Q~IllSATlp~~v~~~l~~~~~~--~~~i~~~~~~~ 487 (560)
......+.+|||||||+++ +++ |++.++.| +....+.+|+++||||++..+...+...+.- +.++.. ..
T Consensus 575 ~L~~~~~LslIVIDEAHcVS-qWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~---Sf 650 (1195)
T PLN03137 575 NLNSRGLLARFVIDEAHCVS-QWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQ---SF 650 (1195)
T ss_pred hhhhccccceeccCcchhhh-hcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeec---cc
Confidence 1123458999999999999 665 88887764 4444457899999999999988888777642 333221 12
Q ss_pred cCCCceeEEEEcCCCCCCCCChhhhhhhHHHHHHHHHHhC-CCCcEEEEeCchHHHHHHHHHHHhhc
Q 008605 488 ISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKS-PVSKTIVFCNKVCFSYKCNNLFGFFS 553 (560)
Q Consensus 488 ~~~~i~~~~v~~~~~~~~~~~~~~~~~~K~~~L~~lL~~~-~~~ktIIFcnS~~~a~~la~~Lk~l~ 553 (560)
..+++...++ ... ......|..++... ...++||||+|+++|+.++..|+..+
T Consensus 651 ~RpNL~y~Vv--~k~-----------kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~G 704 (1195)
T PLN03137 651 NRPNLWYSVV--PKT-----------KKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFG 704 (1195)
T ss_pred CccceEEEEe--ccc-----------hhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCC
Confidence 3334433222 211 12234566666543 35689999999999999999998654
No 47
>PRK09401 reverse gyrase; Reviewed
Probab=99.95 E-value=1.8e-26 Score=272.55 Aligned_cols=234 Identities=15% Similarity=0.128 Sum_probs=174.6
Q ss_pred CCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHH
Q 008605 286 QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (560)
Q Consensus 286 ~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l 365 (560)
.|+ .|+++|..++|.++.|+|++++||||+|||+ |.++++..+.. .++++|||+||++|+.|+++.+
T Consensus 77 ~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~-----------~g~~alIL~PTreLa~Qi~~~l 143 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK-----------KGKKSYIIFPTRLLVEQVVEKL 143 (1176)
T ss_pred cCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh-----------cCCeEEEEeccHHHHHHHHHHH
Confidence 377 8999999999999999999999999999996 55555544421 3678999999999999999999
Q ss_pred HhhhcCCCCceEEEEeCCcc-----hHHHHHHhc-CCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCC-----
Q 008605 366 RSLSKCGVPFRSMVVTGGFR-----QKTQLENLQ-EGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFN----- 434 (560)
Q Consensus 366 ~~l~~~~~~i~v~~l~gg~~-----~~~~~~~l~-~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~----- 434 (560)
+.++.. .++.+..++|+.. ...+...+. ..++|+|+||++|.+++. .+....+++|||||||+|+.
T Consensus 144 ~~l~~~-~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~i 220 (1176)
T PRK09401 144 EKFGEK-VGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNI 220 (1176)
T ss_pred HHHhhh-cCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccch
Confidence 999874 5677777776654 233344444 359999999999998876 45566799999999999983
Q ss_pred -----CCChH-HHHHHHHhhCCC------------------------CCcEEEEeccCCHH-HHHHHHHhCCCCeEEeCC
Q 008605 435 -----DEDFE-VALQSLISSSPV------------------------TAQYLFVTATLPVE-IYNKLVEVFPDCKVVMGP 483 (560)
Q Consensus 435 -----d~~f~-~~l~~Il~~~~~------------------------~~Q~IllSATlp~~-v~~~l~~~~~~~~~i~~~ 483 (560)
..+|. ..++.+++.++. ..|++++|||+++. +... .+.+...+...
T Consensus 221 d~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~---l~~~ll~~~v~ 297 (1176)
T PRK09401 221 DKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVK---LFRELLGFEVG 297 (1176)
T ss_pred hhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHH---HhhccceEEec
Confidence 15674 677777776654 68999999999864 3322 22222222222
Q ss_pred CccccCCCceeEEEEcCCCCCCCCChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHH---HHHHHHHHHhhc
Q 008605 484 GMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCF---SYKCNNLFGFFS 553 (560)
Q Consensus 484 ~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~---a~~la~~Lk~l~ 553 (560)
.......++.+.++.+. ++...|..+++... .++||||++++. |+.+++.|+..+
T Consensus 298 ~~~~~~rnI~~~yi~~~--------------~k~~~L~~ll~~l~-~~~LIFv~t~~~~~~ae~l~~~L~~~g 355 (1176)
T PRK09401 298 SPVFYLRNIVDSYIVDE--------------DSVEKLVELVKRLG-DGGLIFVPSDKGKEYAEELAEYLEDLG 355 (1176)
T ss_pred CcccccCCceEEEEEcc--------------cHHHHHHHHHHhcC-CCEEEEEecccChHHHHHHHHHHHHCC
Confidence 22345567888877653 25567778877654 589999999887 999999998764
No 48
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.94 E-value=1e-25 Score=253.26 Aligned_cols=239 Identities=16% Similarity=0.220 Sum_probs=172.6
Q ss_pred CHHHHHHHHH-CCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCC
Q 008605 276 SDYMIESLKR-QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPT 354 (560)
Q Consensus 276 ~~~ll~~L~~-~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~Pt 354 (560)
.+.....|++ +||..|+|+|.++|+++++|+|+++++|||+|||++|++|++.. ...+|||+|+
T Consensus 10 ~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~---------------~g~tlVisPl 74 (607)
T PRK11057 10 ESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL---------------DGLTLVVSPL 74 (607)
T ss_pred hhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc---------------CCCEEEEecH
Confidence 3344445544 69999999999999999999999999999999999999999842 2359999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHH---hc-CCCcEEEECHHHHHHHHHhccccCCCccEEEEcccc
Q 008605 355 AELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLEN---LQ-EGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVD 430 (560)
Q Consensus 355 reLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~---l~-~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah 430 (560)
++|+.|+.+.++.+ ++.+..+.++......... +. ...+|+++||+++........+...++++|||||||
T Consensus 75 ~sL~~dqv~~l~~~-----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH 149 (607)
T PRK11057 75 ISLMKDQVDQLLAN-----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAH 149 (607)
T ss_pred HHHHHHHHHHHHHc-----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCcc
Confidence 99999999888765 3566667666655443322 22 347899999999873222223345578999999999
Q ss_pred ccCCCCC--hHHHHHHH---HhhCCCCCcEEEEeccCCHHHHHHHHHhC--CCCeEEeCCCccccCCCceeEEEEcCCCC
Q 008605 431 ILFNDED--FEVALQSL---ISSSPVTAQYLFVTATLPVEIYNKLVEVF--PDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503 (560)
Q Consensus 431 ~ll~d~~--f~~~l~~I---l~~~~~~~Q~IllSATlp~~v~~~l~~~~--~~~~~i~~~~~~~~~~~i~~~~v~~~~~~ 503 (560)
++. +++ |.+.+..| ...+ +..|++++|||++..+...+...+ .++.+.... ...+++...++. .
T Consensus 150 ~i~-~~G~~fr~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~---~~r~nl~~~v~~--~-- 220 (607)
T PRK11057 150 CIS-QWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQISS---FDRPNIRYTLVE--K-- 220 (607)
T ss_pred ccc-cccCcccHHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECC---CCCCcceeeeee--c--
Confidence 998 554 77766554 3333 578999999999988777666654 344443322 122333322221 1
Q ss_pred CCCCChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhhc
Q 008605 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFFS 553 (560)
Q Consensus 504 ~~~~~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l~ 553 (560)
..+...|..++.....+++||||+|+++|+.++..|+..+
T Consensus 221 ----------~~~~~~l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~g 260 (607)
T PRK11057 221 ----------FKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRG 260 (607)
T ss_pred ----------cchHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCC
Confidence 1344667777777777899999999999999999998753
No 49
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.94 E-value=1e-25 Score=253.14 Aligned_cols=232 Identities=20% Similarity=0.231 Sum_probs=175.2
Q ss_pred HHHH-CCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHH
Q 008605 282 SLKR-QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQ 360 (560)
Q Consensus 282 ~L~~-~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Q 360 (560)
.|++ +||..|+++|.++|++++.|+|+++++|||+|||++|++|++.. ...+|||+|+++|+.|
T Consensus 4 ~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~---------------~g~~lVisPl~sL~~d 68 (591)
T TIGR01389 4 VLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL---------------KGLTVVISPLISLMKD 68 (591)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc---------------CCcEEEEcCCHHHHHH
Confidence 4544 79999999999999999999999999999999999999999732 2358999999999999
Q ss_pred HHHHHHhhhcCCCCceEEEEeCCcchHHHHHH---h-cCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCC
Q 008605 361 VLSNCRSLSKCGVPFRSMVVTGGFRQKTQLEN---L-QEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDE 436 (560)
Q Consensus 361 i~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~---l-~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~ 436 (560)
+++.++.+ ++.+..+.++....+.... + ....+|+++||+++........+...++++|||||||++. ++
T Consensus 69 q~~~l~~~-----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~-~~ 142 (591)
T TIGR01389 69 QVDQLRAA-----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVS-QW 142 (591)
T ss_pred HHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccc-cc
Confidence 99988875 3567778887766544332 2 2458999999999975444444566789999999999998 54
Q ss_pred C--hHHHHHHHHh---hCCCCCcEEEEeccCCHHHHHHHHHhCC--CCeEEeCCCccccCCCceeEEEEcCCCCCCCCCh
Q 008605 437 D--FEVALQSLIS---SSPVTAQYLFVTATLPVEIYNKLVEVFP--DCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509 (560)
Q Consensus 437 ~--f~~~l~~Il~---~~~~~~Q~IllSATlp~~v~~~l~~~~~--~~~~i~~~~~~~~~~~i~~~~v~~~~~~~~~~~~ 509 (560)
+ |.+.+..+.. .++ ..+++++|||.+..+...+..++. .+..+... ...+++...+.. .
T Consensus 143 g~~frp~y~~l~~l~~~~~-~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~---~~r~nl~~~v~~--~-------- 208 (591)
T TIGR01389 143 GHDFRPEYQRLGSLAERFP-QVPRIALTATADAETRQDIRELLRLADANEFITS---FDRPNLRFSVVK--K-------- 208 (591)
T ss_pred cCccHHHHHHHHHHHHhCC-CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecC---CCCCCcEEEEEe--C--------
Confidence 4 8877766643 333 556999999999998888887764 33333221 122333322222 1
Q ss_pred hhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhh
Q 008605 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFF 552 (560)
Q Consensus 510 ~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l 552 (560)
..+...|.+++..+...++||||+|++.|+.+++.|+..
T Consensus 209 ----~~~~~~l~~~l~~~~~~~~IIf~~sr~~~e~la~~L~~~ 247 (591)
T TIGR01389 209 ----NNKQKFLLDYLKKHRGQSGIIYASSRKKVEELAERLESQ 247 (591)
T ss_pred ----CCHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhC
Confidence 135567788887776789999999999999999999764
No 50
>PRK14701 reverse gyrase; Provisional
Probab=99.94 E-value=1.6e-25 Score=269.92 Aligned_cols=245 Identities=15% Similarity=0.120 Sum_probs=178.9
Q ss_pred HHHHHHHHH-CCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCH
Q 008605 277 DYMIESLKR-QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTA 355 (560)
Q Consensus 277 ~~ll~~L~~-~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~Ptr 355 (560)
.++.+.+++ +|| .|+++|.++|+.++.|+|++++||||+|||++++++++.... .+.++|||+||+
T Consensus 66 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~------------~g~~aLVl~PTr 132 (1638)
T PRK14701 66 EEFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL------------KGKKCYIILPTT 132 (1638)
T ss_pred HHHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh------------cCCeEEEEECHH
Confidence 345555655 799 699999999999999999999999999999976666554321 356899999999
Q ss_pred HHHHHHHHHHHhhhcC-CCCceEEEEeCCcchHHHH---HHhcC-CCcEEEECHHHHHHHHHhccccCCCccEEEEcccc
Q 008605 356 ELASQVLSNCRSLSKC-GVPFRSMVVTGGFRQKTQL---ENLQE-GVDVLIATPGRFMFLIKEGILQLINLRCAILDEVD 430 (560)
Q Consensus 356 eLa~Qi~~~l~~l~~~-~~~i~v~~l~gg~~~~~~~---~~l~~-~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah 430 (560)
+|+.|+++.++.++.. +.++++..++|+.+..++. ..+.. .++|+|+||++|...+... . ..++++|||||||
T Consensus 133 eLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l-~-~~~i~~iVVDEAD 210 (1638)
T PRK14701 133 LLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM-K-HLKFDFIFVDDVD 210 (1638)
T ss_pred HHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH-h-hCCCCEEEEECce
Confidence 9999999999998763 2357788889998876653 34444 4899999999998776542 2 2679999999999
Q ss_pred ccCC----------CCChHHHHHH----HHh----------------------hCCCCCc-EEEEeccCCHHHHHHHHHh
Q 008605 431 ILFN----------DEDFEVALQS----LIS----------------------SSPVTAQ-YLFVTATLPVEIYNKLVEV 473 (560)
Q Consensus 431 ~ll~----------d~~f~~~l~~----Il~----------------------~~~~~~Q-~IllSATlp~~v~~~l~~~ 473 (560)
+|+. ..+|.+++.. |+. .++...| ++++|||++..- .....
T Consensus 211 ~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~--~~~~l 288 (1638)
T PRK14701 211 AFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKG--DRVKL 288 (1638)
T ss_pred eccccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchh--HHHHH
Confidence 9982 1478877764 322 2344556 677999998531 12233
Q ss_pred CCCCeEEeCCCccccCCCceeEEEEcCCCCCCCCChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHH---HHHHHHHHH
Q 008605 474 FPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCF---SYKCNNLFG 550 (560)
Q Consensus 474 ~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~---a~~la~~Lk 550 (560)
+.++..+..........++.+.++.+... .+ ..|.++++.. +.++||||+|++. |+.+++.|+
T Consensus 289 ~~~~l~f~v~~~~~~lr~i~~~yi~~~~~------------~k-~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~ 354 (1638)
T PRK14701 289 YRELLGFEVGSGRSALRNIVDVYLNPEKI------------IK-EHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLL 354 (1638)
T ss_pred hhcCeEEEecCCCCCCCCcEEEEEECCHH------------HH-HHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHH
Confidence 44444444444445566788887765431 23 5677788766 4689999999886 589999998
Q ss_pred hh
Q 008605 551 FF 552 (560)
Q Consensus 551 ~l 552 (560)
..
T Consensus 355 ~~ 356 (1638)
T PRK14701 355 ED 356 (1638)
T ss_pred HC
Confidence 75
No 51
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.93 E-value=7.1e-25 Score=259.37 Aligned_cols=242 Identities=21% Similarity=0.205 Sum_probs=171.3
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHH
Q 008605 277 DYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAE 356 (560)
Q Consensus 277 ~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~Ptre 356 (560)
.++.+.+.+.....|+++|..+++.++.|+|++++||||+|||+ |.+|++..+.. .++++|||+||++
T Consensus 65 ~~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~-----------~g~~vLIL~PTre 132 (1171)
T TIGR01054 65 KEFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK-----------KGKRCYIILPTTL 132 (1171)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh-----------cCCeEEEEeCHHH
Confidence 34445555544458999999999999999999999999999997 66777665532 2678999999999
Q ss_pred HHHHHHHHHHhhhcCCCCce---EEEEeCCcchHHH---HHHhcC-CCcEEEECHHHHHHHHHhccccCCCccEEEEccc
Q 008605 357 LASQVLSNCRSLSKCGVPFR---SMVVTGGFRQKTQ---LENLQE-GVDVLIATPGRFMFLIKEGILQLINLRCAILDEV 429 (560)
Q Consensus 357 La~Qi~~~l~~l~~~~~~i~---v~~l~gg~~~~~~---~~~l~~-~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEa 429 (560)
||.|+++.++.++.. .++. +.+++|+.+...+ ...+.+ +++|+|+||++|.+.+..- .. +++++|||||
T Consensus 133 La~Qi~~~l~~l~~~-~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l--~~-~~~~iVvDEa 208 (1171)
T TIGR01054 133 LVIQVAEKISSLAEK-AGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDEL--GP-KFDFIFVDDV 208 (1171)
T ss_pred HHHHHHHHHHHHHHh-cCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHh--cC-CCCEEEEeCh
Confidence 999999999998763 3333 3356788776554 333443 5999999999998877642 12 8999999999
Q ss_pred cccCCC----------CChHHH-HHHHH----------------------hhCCCCCc--EEEEecc-CCHHHHHHHHHh
Q 008605 430 DILFND----------EDFEVA-LQSLI----------------------SSSPVTAQ--YLFVTAT-LPVEIYNKLVEV 473 (560)
Q Consensus 430 h~ll~d----------~~f~~~-l~~Il----------------------~~~~~~~Q--~IllSAT-lp~~v~~~l~~~ 473 (560)
|+|+.. .||... ++.++ +.++..+| ++++||| +|..+...+
T Consensus 209 D~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l--- 285 (1171)
T TIGR01054 209 DALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKL--- 285 (1171)
T ss_pred HhhhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHH---
Confidence 999931 467653 44432 23445555 6779999 676554322
Q ss_pred CCCCeEEeCCCccccCCCceeEEEEcCCCCCCCCChhhhhhhHHHHHHHHHHhCCCCcEEEEeCch---HHHHHHHHHHH
Q 008605 474 FPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKV---CFSYKCNNLFG 550 (560)
Q Consensus 474 ~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~---~~a~~la~~Lk 550 (560)
+.+...+..........++.+.++.+.. +...|.++++... .++||||+++ +.|+.+++.|+
T Consensus 286 ~r~ll~~~v~~~~~~~r~I~~~~~~~~~--------------~~~~L~~ll~~l~-~~~IVFv~t~~~~~~a~~l~~~L~ 350 (1171)
T TIGR01054 286 FRELLGFEVGGGSDTLRNVVDVYVEDED--------------LKETLLEIVKKLG-TGGIVYVSIDYGKEKAEEIAEFLE 350 (1171)
T ss_pred cccccceEecCccccccceEEEEEeccc--------------HHHHHHHHHHHcC-CCEEEEEeccccHHHHHHHHHHHH
Confidence 3333222222233455677777765331 2345677776653 6899999999 99999999998
Q ss_pred hh
Q 008605 551 FF 552 (560)
Q Consensus 551 ~l 552 (560)
..
T Consensus 351 ~~ 352 (1171)
T TIGR01054 351 NH 352 (1171)
T ss_pred hC
Confidence 75
No 52
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.93 E-value=2.8e-25 Score=208.33 Aligned_cols=164 Identities=32% Similarity=0.543 Sum_probs=140.8
Q ss_pred hHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhhcC
Q 008605 292 SQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKC 371 (560)
Q Consensus 292 t~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~~ 371 (560)
||+|.++|+.+.+|+++++.+|||+|||++|++|+++.+.+. ...++||++|+++|++|+++.+..++..
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~----------~~~~~lii~P~~~l~~q~~~~~~~~~~~ 70 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG----------KDARVLIIVPTRALAEQQFERLRKFFSN 70 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT----------SSSEEEEEESSHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC----------CCceEEEEeecccccccccccccccccc
Confidence 789999999999999999999999999999999999888653 2348999999999999999999999874
Q ss_pred CCCceEEEEeCCcchH-HHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCCChHHHHHHHHhhCC
Q 008605 372 GVPFRSMVVTGGFRQK-TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSP 450 (560)
Q Consensus 372 ~~~i~v~~l~gg~~~~-~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~ 450 (560)
..+++..++|+.... .....+..+++|+|+||+++.+++......+.++++|||||+|.+. ...+...+..|+..+.
T Consensus 71 -~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~-~~~~~~~~~~i~~~~~ 148 (169)
T PF00270_consen 71 -TNVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLS-DETFRAMLKSILRRLK 148 (169)
T ss_dssp -TTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHH-HTTHHHHHHHHHHHSH
T ss_pred -cccccccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccc-cccHHHHHHHHHHHhc
Confidence 678999999988765 4445555679999999999999999865577789999999999999 5588888999888873
Q ss_pred --CCCcEEEEeccCCHHHH
Q 008605 451 --VTAQYLFVTATLPVEIY 467 (560)
Q Consensus 451 --~~~Q~IllSATlp~~v~ 467 (560)
.+.|++++|||++..+.
T Consensus 149 ~~~~~~~i~~SAT~~~~~~ 167 (169)
T PF00270_consen 149 RFKNIQIILLSATLPSNVE 167 (169)
T ss_dssp TTTTSEEEEEESSSTHHHH
T ss_pred CCCCCcEEEEeeCCChhHh
Confidence 36899999999996543
No 53
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.93 E-value=6.4e-25 Score=249.44 Aligned_cols=251 Identities=20% Similarity=0.250 Sum_probs=184.0
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHH-HcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcC
Q 008605 275 CSDYMIESLKRQNFLRPSQIQAMAFPPV-VEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAP 353 (560)
Q Consensus 275 L~~~ll~~L~~~g~~~pt~iQ~~aip~i-l~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~P 353 (560)
+.+.+.+.++..++..+.+-|+.++... ..++|+||++|||||||+.+++.++..+.+. +.++|||||
T Consensus 16 ~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~-----------~~k~vYivP 84 (766)
T COG1204 16 LDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG-----------GGKVVYIVP 84 (766)
T ss_pred ccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc-----------CCcEEEEeC
Confidence 6778888888889988888888887664 4569999999999999999999999998763 457999999
Q ss_pred CHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccC
Q 008605 354 TAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILF 433 (560)
Q Consensus 354 treLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll 433 (560)
+++||.|+++.++.+.. .+++|...+|+...... . ..+++|+|+||+++..++++....+..+++|||||+|.+.
T Consensus 85 lkALa~Ek~~~~~~~~~--~GirV~~~TgD~~~~~~--~-l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~ 159 (766)
T COG1204 85 LKALAEEKYEEFSRLEE--LGIRVGISTGDYDLDDE--R-LARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLG 159 (766)
T ss_pred hHHHHHHHHHHhhhHHh--cCCEEEEecCCcccchh--h-hccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecC
Confidence 99999999999996654 57999999999876542 1 2358999999999999999988889999999999999998
Q ss_pred CCCChHHHHHHHHhhCC---CCCcEEEEeccCCHHHHHHHHHhCCCCeEE----eCCCccccCCCceeEEEEcCCCCCCC
Q 008605 434 NDEDFEVALQSLISSSP---VTAQYLFVTATLPVEIYNKLVEVFPDCKVV----MGPGMHRISPGLEEFLVDCSGDQESD 506 (560)
Q Consensus 434 ~d~~f~~~l~~Il~~~~---~~~Q~IllSATlp~~v~~~l~~~~~~~~~i----~~~~~~~~~~~i~~~~v~~~~~~~~~ 506 (560)
+...++.++.|+..+. ..+|++++|||+|.- ..+..|++...+. ..+.....+ ..+.++.......
T Consensus 160 -d~~RG~~lE~iv~r~~~~~~~~rivgLSATlpN~--~evA~wL~a~~~~~~~rp~~l~~~v~--~~~~~~~~~~~~k-- 232 (766)
T COG1204 160 -DRTRGPVLESIVARMRRLNELIRIVGLSATLPNA--EEVADWLNAKLVESDWRPVPLRRGVP--YVGAFLGADGKKK-- 232 (766)
T ss_pred -CcccCceehhHHHHHHhhCcceEEEEEeeecCCH--HHHHHHhCCcccccCCCCcccccCCc--cceEEEEecCccc--
Confidence 6667777787776654 347999999999964 3456666543221 111111111 2233333332211
Q ss_pred CChhhhhhhHHHHHHHHHHh-CCCCcEEEEeCchHHHHHHHHHHHh
Q 008605 507 KTPETAFLNKKSALLQLIEK-SPVSKTIVFCNKVCFSYKCNNLFGF 551 (560)
Q Consensus 507 ~~~~~~~~~K~~~L~~lL~~-~~~~ktIIFcnS~~~a~~la~~Lk~ 551 (560)
..+.. .....+..++.. ..++++||||+|++.+..+|+.|+.
T Consensus 233 ~~~~~---~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~ 275 (766)
T COG1204 233 TWPLL---IDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRI 275 (766)
T ss_pred ccccc---chHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHH
Confidence 00111 111222222222 2458999999999999999999985
No 54
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.92 E-value=2.3e-23 Score=241.24 Aligned_cols=237 Identities=16% Similarity=0.148 Sum_probs=171.0
Q ss_pred CCHHHHHHH-HHCCCCCChHHHHHHHHHHHcC------CcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCE
Q 008605 275 CSDYMIESL-KRQNFLRPSQIQAMAFPPVVEG------KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (560)
Q Consensus 275 L~~~ll~~L-~~~g~~~pt~iQ~~aip~il~g------~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 347 (560)
.+..++..+ ..++| .||++|.+||+.++++ +|++++|+||||||++|++|++..+.. +.+
T Consensus 436 ~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~------------g~q 502 (926)
T TIGR00580 436 PDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD------------GKQ 502 (926)
T ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh------------CCe
Confidence 345566655 44688 5999999999999975 799999999999999999999887642 468
Q ss_pred EEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHH---HHHhcC-CCcEEEECHHHHHHHHHhccccCCCccE
Q 008605 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ---LENLQE-GVDVLIATPGRFMFLIKEGILQLINLRC 423 (560)
Q Consensus 348 aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~---~~~l~~-~~~IlV~TP~~L~~ll~~~~~~l~~l~~ 423 (560)
++||+||++||.|+++.+++++.. .++++..++|+....++ ...+.. .++|+|+||.. + .+.+.+.++++
T Consensus 503 vlvLvPT~~LA~Q~~~~f~~~~~~-~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~l----l-~~~v~f~~L~l 576 (926)
T TIGR00580 503 VAVLVPTTLLAQQHFETFKERFAN-FPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKL----L-QKDVKFKDLGL 576 (926)
T ss_pred EEEEeCcHHHHHHHHHHHHHHhcc-CCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHH----h-hCCCCcccCCE
Confidence 999999999999999999988763 57888888887765443 333444 48999999943 2 34567899999
Q ss_pred EEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCC
Q 008605 424 AILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503 (560)
Q Consensus 424 LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~ 503 (560)
|||||+|++. ...+..++.++.++|+++||||+.+.........+.++.++......+ ..+..++.....
T Consensus 577 lVIDEahrfg------v~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R--~~V~t~v~~~~~-- 646 (926)
T TIGR00580 577 LIIDEEQRFG------VKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDR--LPVRTFVMEYDP-- 646 (926)
T ss_pred EEeecccccc------hhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCc--cceEEEEEecCH--
Confidence 9999999864 223445566677899999999987665554444555665554433222 224444443211
Q ss_pred CCCCChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhh
Q 008605 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFF 552 (560)
Q Consensus 504 ~~~~~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l 552 (560)
......+...+. .+++++||||++++++.+++.|+.+
T Consensus 647 ----------~~i~~~i~~el~--~g~qv~if~n~i~~~e~l~~~L~~~ 683 (926)
T TIGR00580 647 ----------ELVREAIRRELL--RGGQVFYVHNRIESIEKLATQLREL 683 (926)
T ss_pred ----------HHHHHHHHHHHH--cCCeEEEEECCcHHHHHHHHHHHHh
Confidence 011122222222 3479999999999999999999875
No 55
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.92 E-value=2.7e-23 Score=245.25 Aligned_cols=234 Identities=19% Similarity=0.178 Sum_probs=174.3
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHcC------CcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEE
Q 008605 278 YMIESLKRQNFLRPSQIQAMAFPPVVEG------KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVIL 351 (560)
Q Consensus 278 ~ll~~L~~~g~~~pt~iQ~~aip~il~g------~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil 351 (560)
...+....++| .||++|.+||+.++.+ +|++++++||+|||++|+.+++..+. .+.+++||
T Consensus 589 ~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~------------~g~qvlvL 655 (1147)
T PRK10689 589 QYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE------------NHKQVAVL 655 (1147)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH------------cCCeEEEE
Confidence 34445577788 7999999999999987 89999999999999999988876542 36689999
Q ss_pred cCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHh---c-CCCcEEEECHHHHHHHHHhccccCCCccEEEEc
Q 008605 352 APTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427 (560)
Q Consensus 352 ~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l---~-~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViD 427 (560)
+||++||.|+++.+++.+.. .++++.+++|+.+..++...+ . ..++|+|+||+.+ ...+.+.++++||||
T Consensus 656 vPT~eLA~Q~~~~f~~~~~~-~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL-----~~~v~~~~L~lLVID 729 (1147)
T PRK10689 656 VPTTLLAQQHYDNFRDRFAN-WPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL-----QSDVKWKDLGLLIVD 729 (1147)
T ss_pred eCcHHHHHHHHHHHHHhhcc-CCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH-----hCCCCHhhCCEEEEe
Confidence 99999999999999986552 468888888888776665443 2 3589999999643 234567899999999
Q ss_pred cccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCCCCCC
Q 008605 428 EVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507 (560)
Q Consensus 428 Eah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~~~~ 507 (560)
|+|++. +.. ...++.++.++|+++||||+++.........+.++.++..+.... ..+++++......
T Consensus 730 EahrfG----~~~--~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r--~~v~~~~~~~~~~----- 796 (1147)
T PRK10689 730 EEHRFG----VRH--KERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARR--LAVKTFVREYDSL----- 796 (1147)
T ss_pred chhhcc----hhH--HHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCC--CCceEEEEecCcH-----
Confidence 999974 221 344566778999999999988777776666777777765443322 2344444432210
Q ss_pred ChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhh
Q 008605 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFF 552 (560)
Q Consensus 508 ~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l 552 (560)
..+...+.++. ..++++||||+++.++.+++.|+.+
T Consensus 797 ------~~k~~il~el~---r~gqv~vf~n~i~~ie~la~~L~~~ 832 (1147)
T PRK10689 797 ------VVREAILREIL---RGGQVYYLYNDVENIQKAAERLAEL 832 (1147)
T ss_pred ------HHHHHHHHHHh---cCCeEEEEECCHHHHHHHHHHHHHh
Confidence 11223333443 2478999999999999999999876
No 56
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.92 E-value=1.2e-23 Score=249.89 Aligned_cols=236 Identities=20% Similarity=0.256 Sum_probs=159.1
Q ss_pred EEcCCCCcchhhcHHHHHHHHHHHHhhcc-CCCCCCCCEEEEEcCCHHHHHHHHHHHHhhh-----------cCCCCceE
Q 008605 310 LADQSGSGKTLAYLLPVIQRLRQEELQGL-SKSTSGSPRVVILAPTAELASQVLSNCRSLS-----------KCGVPFRS 377 (560)
Q Consensus 310 v~apTGSGKTla~llpil~~l~~~~~~~~-~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~-----------~~~~~i~v 377 (560)
|+||||||||++|+||++..+..+..... ......+.++|||+|+++|++|+++.++... ....++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 57999999999999999999875421000 0011346899999999999999999987521 12246899
Q ss_pred EEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhc-cccCCCccEEEEccccccCCCCC----hHHHHHHHHhhCCCC
Q 008605 378 MVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG-ILQLINLRCAILDEVDILFNDED----FEVALQSLISSSPVT 452 (560)
Q Consensus 378 ~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~-~~~l~~l~~LViDEah~ll~d~~----f~~~l~~Il~~~~~~ 452 (560)
...+|+.+..++.+.+.+.++|||+||++|..++.++ ...++++++|||||+|.|. +.. +...+++|...++.+
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~-g~kRG~~Lel~LeRL~~l~~~~ 159 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVA-GSKRGAHLALSLERLDALLHTS 159 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhc-ccccccHHHHHHHHHHHhCCCC
Confidence 9999999998887777788999999999999887653 3468999999999999999 433 556777887777888
Q ss_pred CcEEEEeccCCHHHHHHHHHhCC--CCeEEeCCCccccCCCceeEEEEcCCCCCCC--------CCh--hhhh--hhHHH
Q 008605 453 AQYLFVTATLPVEIYNKLVEVFP--DCKVVMGPGMHRISPGLEEFLVDCSGDQESD--------KTP--ETAF--LNKKS 518 (560)
Q Consensus 453 ~Q~IllSATlp~~v~~~l~~~~~--~~~~i~~~~~~~~~~~i~~~~v~~~~~~~~~--------~~~--~~~~--~~K~~ 518 (560)
.|+|++|||+++. +.+.+++. .+..++..... ....++ .++......... ... .... .....
T Consensus 160 ~QrIgLSATI~n~--eevA~~L~g~~pv~Iv~~~~~-r~~~l~-v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~ 235 (1490)
T PRK09751 160 AQRIGLSATVRSA--SDVAAFLGGDRPVTVVNPPAM-RHPQIR-IVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIET 235 (1490)
T ss_pred CeEEEEEeeCCCH--HHHHHHhcCCCCEEEECCCCC-cccceE-EEEecCchhhccccccccccccchhhhhhhhHHHHH
Confidence 9999999999863 23556663 23344332211 112232 222221100000 000 0000 00111
Q ss_pred HHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhh
Q 008605 519 ALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFF 552 (560)
Q Consensus 519 ~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l 552 (560)
.+...+. ...++||||||+..|+.++..|+++
T Consensus 236 ~il~~i~--~~~stLVFvNSR~~AE~La~~L~~~ 267 (1490)
T PRK09751 236 GILDEVL--RHRSTIVFTNSRGLAEKLTARLNEL 267 (1490)
T ss_pred HHHHHHh--cCCCEEEECCCHHHHHHHHHHHHHh
Confidence 2222222 3478999999999999999999875
No 57
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.92 E-value=6.2e-24 Score=224.46 Aligned_cols=254 Identities=22% Similarity=0.275 Sum_probs=196.0
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHH-HHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCC
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPP-VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~-il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~ 346 (560)
....+|.+++.+.+.|+..|++.+.|+|.-|+.+ ++.|.|.+|+++|+||||++..++-+..++. .+.
T Consensus 194 ~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~-----------~g~ 262 (830)
T COG1202 194 VPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS-----------GGK 262 (830)
T ss_pred ccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh-----------CCC
Confidence 3467899999999999999999999999999988 7899999999999999999999999888875 356
Q ss_pred EEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHH----HHhcCCCcEEEECHHHHHHHHHhccccCCCcc
Q 008605 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQL----ENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422 (560)
Q Consensus 347 ~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~----~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~ 422 (560)
+.||++|..+||+|.++.|+.-... .++.+.+-.|-....... ......+||||+|.+-+..+++.+ ..+.++.
T Consensus 263 KmlfLvPLVALANQKy~dF~~rYs~-LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiG 340 (830)
T COG1202 263 KMLFLVPLVALANQKYEDFKERYSK-LGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIG 340 (830)
T ss_pred eEEEEehhHHhhcchHHHHHHHhhc-ccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-Ccccccc
Confidence 8999999999999999999765442 566776666655443321 111234899999999999999887 5789999
Q ss_pred EEEEccccccCCCCChHHHHHHHHh---hCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEc
Q 008605 423 CAILDEVDILFNDEDFEVALQSLIS---SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDC 499 (560)
Q Consensus 423 ~LViDEah~ll~d~~f~~~l~~Il~---~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~ 499 (560)
.+||||+|.+- |...++-+..++. .+-+..|+|.+|||+-..- .+.+.+....+.+.. -+..++.+++.+
T Consensus 341 tVVIDEiHtL~-deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp~--elA~~l~a~lV~y~~----RPVplErHlvf~ 413 (830)
T COG1202 341 TVVIDEIHTLE-DEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNPE--ELAKKLGAKLVLYDE----RPVPLERHLVFA 413 (830)
T ss_pred eEEeeeeeecc-chhcccchhhHHHHHHHhCCCCeEEEEEeecCChH--HHHHHhCCeeEeecC----CCCChhHeeeee
Confidence 99999999987 6565555555443 3445899999999995432 244555544444322 233466667777
Q ss_pred CCCCCCCCChhhhhhhHHHHHHHHHHhC--------CCCcEEEEeCchHHHHHHHHHHHhh
Q 008605 500 SGDQESDKTPETAFLNKKSALLQLIEKS--------PVSKTIVFCNKVCFSYKCNNLFGFF 552 (560)
Q Consensus 500 ~~~~~~~~~~~~~~~~K~~~L~~lL~~~--------~~~ktIIFcnS~~~a~~la~~Lk~l 552 (560)
.++ .+|...+..+.+.. -.+|||||++|+..|+.+|.+|..-
T Consensus 414 ~~e-----------~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~k 463 (830)
T COG1202 414 RNE-----------SEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGK 463 (830)
T ss_pred cCc-----------hHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcC
Confidence 654 47888888877541 2579999999999999999999854
No 58
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.91 E-value=3.9e-23 Score=237.79 Aligned_cols=263 Identities=21% Similarity=0.201 Sum_probs=188.2
Q ss_pred CHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCH
Q 008605 276 SDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTA 355 (560)
Q Consensus 276 ~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~Ptr 355 (560)
...+..+|.+.|+..++.+|.+|+..+.+|+|+||+++||||||++|++||++.+.+.+ ..+||||.||+
T Consensus 56 ~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~----------~a~AL~lYPtn 125 (851)
T COG1205 56 DESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDP----------SARALLLYPTN 125 (851)
T ss_pred hhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCc----------CccEEEEechh
Confidence 34557888888999999999999999999999999999999999999999999998753 33899999999
Q ss_pred HHHHHHHHHHHhhhcCCC-CceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhc----cccCCCccEEEEcccc
Q 008605 356 ELASQVLSNCRSLSKCGV-PFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG----ILQLINLRCAILDEVD 430 (560)
Q Consensus 356 eLa~Qi~~~l~~l~~~~~-~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~----~~~l~~l~~LViDEah 430 (560)
+||+++.+.++++..... ++.+..+.|+....+....+.+.++||++||++|..++.+. ...+.++++||+||+|
T Consensus 126 ALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElH 205 (851)
T COG1205 126 ALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELH 205 (851)
T ss_pred hhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecce
Confidence 999999999999876422 58888888888887766677788999999999999866443 2357789999999999
Q ss_pred ccCCC--CChHHHHHHHHhhC---CCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCCCC
Q 008605 431 ILFND--EDFEVALQSLISSS---PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505 (560)
Q Consensus 431 ~ll~d--~~f~~~l~~Il~~~---~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~~ 505 (560)
.+-.- ....-.+++++..+ +...|+|+.|||+...- ++..+.+......... ....+...+.++..-+.....
T Consensus 206 tYrGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~-e~~~~l~~~~f~~~v~-~~g~~~~~~~~~~~~p~~~~~ 283 (851)
T COG1205 206 TYRGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPG-EFAEELFGRDFEVPVD-EDGSPRGLRYFVRREPPIREL 283 (851)
T ss_pred eccccchhHHHHHHHHHHHHHhccCCCceEEEEeccccChH-HHHHHhcCCcceeecc-CCCCCCCceEEEEeCCcchhh
Confidence 98631 12444445554443 45789999999996543 4566666554333122 223333444444443321000
Q ss_pred CCChhhhhhhHHHHHHHHHHh--CCCCcEEEEeCchHHHHHHH----HHHHhhc
Q 008605 506 DKTPETAFLNKKSALLQLIEK--SPVSKTIVFCNKVCFSYKCN----NLFGFFS 553 (560)
Q Consensus 506 ~~~~~~~~~~K~~~L~~lL~~--~~~~ktIIFcnS~~~a~~la----~~Lk~l~ 553 (560)
.......+...+..+... ...-++|+||.+++.++.++ ..+.+++
T Consensus 284 ---~~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~ 334 (851)
T COG1205 284 ---AESIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREG 334 (851)
T ss_pred ---hhhcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcc
Confidence 000112344444444433 24579999999999999997 4444444
No 59
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.91 E-value=6.2e-24 Score=236.82 Aligned_cols=255 Identities=15% Similarity=0.240 Sum_probs=179.9
Q ss_pred HCCCCCChHHHHHHHHHHHc-CCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHH
Q 008605 285 RQNFLRPSQIQAMAFPPVVE-GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLS 363 (560)
Q Consensus 285 ~~g~~~pt~iQ~~aip~il~-g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~ 363 (560)
-++|..++.+|.+++|.+.. ..|+|||||||+|||..|+|.|++.+.+..-. ........++|||+|+++||.++++
T Consensus 105 ~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~--~~i~k~~fKiVYIaPmKALa~Em~~ 182 (1230)
T KOG0952|consen 105 FFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQ--GDIAKDDFKIVYIAPMKALAAEMVD 182 (1230)
T ss_pred cccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccc--cccccCCceEEEEechHHHHHHHHH
Confidence 35888999999999999875 56999999999999999999999999863211 1223467899999999999999999
Q ss_pred HHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhcc---ccCCCccEEEEccccccCCCCChHH
Q 008605 364 NCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGI---LQLINLRCAILDEVDILFNDEDFEV 440 (560)
Q Consensus 364 ~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~---~~l~~l~~LViDEah~ll~d~~f~~ 440 (560)
.+.+-... .++.|..++|+....... + ..++|||+||+++.-..++.. ..++.+++|||||+|.+- ...++
T Consensus 183 ~~~kkl~~-~gi~v~ELTGD~ql~~te--i-~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLh--d~RGp 256 (1230)
T KOG0952|consen 183 KFSKKLAP-LGISVRELTGDTQLTKTE--I-ADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLH--DDRGP 256 (1230)
T ss_pred HHhhhccc-ccceEEEecCcchhhHHH--H-HhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhc--Ccccc
Confidence 88665543 689999999998764432 2 238999999999865554422 246679999999999997 35666
Q ss_pred HHHHHHhhC-------CCCCcEEEEeccCCHHHHHHHHHhCCC----CeEEeCCCccccCCCceeEEEEcCCCCCCCCCh
Q 008605 441 ALQSLISSS-------PVTAQYLFVTATLPVEIYNKLVEVFPD----CKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509 (560)
Q Consensus 441 ~l~~Il~~~-------~~~~Q~IllSATlp~~v~~~l~~~~~~----~~~i~~~~~~~~~~~i~~~~v~~~~~~~~~~~~ 509 (560)
.++.|+.++ ....+++++|||+|.- ..+..+++- -.+.+... .-+..+.+.++.++.. +.....
T Consensus 257 vlEtiVaRtlr~vessqs~IRivgLSATlPN~--eDvA~fL~vn~~~glfsFd~~--yRPvpL~~~~iG~k~~-~~~~~~ 331 (1230)
T KOG0952|consen 257 VLETIVARTLRLVESSQSMIRIVGLSATLPNY--EDVARFLRVNPYAGLFSFDQR--YRPVPLTQGFIGIKGK-KNRQQK 331 (1230)
T ss_pred hHHHHHHHHHHHHHhhhhheEEEEeeccCCCH--HHHHHHhcCCCccceeeeccc--ccccceeeeEEeeecc-cchhhh
Confidence 666665443 3568899999999943 234444432 22333332 2333366667766553 111111
Q ss_pred hhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhhcc
Q 008605 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFFSE 554 (560)
Q Consensus 510 ~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l~~ 554 (560)
.....-.++.+.+.+.+ +.+++|||.+++++.+.|+.|.+...
T Consensus 332 ~~~d~~~~~kv~e~~~~--g~qVlvFvhsR~~Ti~tA~~l~~~a~ 374 (1230)
T KOG0952|consen 332 KNIDEVCYDKVVEFLQE--GHQVLVFVHSRNETIRTAKKLRERAE 374 (1230)
T ss_pred hhHHHHHHHHHHHHHHc--CCeEEEEEecChHHHHHHHHHHHHHH
Confidence 11122344445555543 47999999999999999999977643
No 60
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.90 E-value=6.1e-22 Score=225.28 Aligned_cols=236 Identities=17% Similarity=0.192 Sum_probs=159.4
Q ss_pred HHHHHHH-HHCCCCCChHHHHHHHHHHHcC------CcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEE
Q 008605 277 DYMIESL-KRQNFLRPSQIQAMAFPPVVEG------KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVV 349 (560)
Q Consensus 277 ~~ll~~L-~~~g~~~pt~iQ~~aip~il~g------~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aL 349 (560)
..+.+.+ ..++| .||++|.+|++.+..+ +++|++|+||||||++|++|++..+. .+.+++
T Consensus 248 ~~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~------------~g~q~l 314 (681)
T PRK10917 248 GELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE------------AGYQAA 314 (681)
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH------------cCCeEE
Confidence 3444444 55688 6999999999999887 48999999999999999999998763 366899
Q ss_pred EEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHH---HHHhcC-CCcEEEECHHHHHHHHHhccccCCCccEEE
Q 008605 350 ILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ---LENLQE-GVDVLIATPGRFMFLIKEGILQLINLRCAI 425 (560)
Q Consensus 350 il~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~---~~~l~~-~~~IlV~TP~~L~~ll~~~~~~l~~l~~LV 425 (560)
|++||++||.|+++.++++... .++++.+++|+....+. ...+.. .++|+|+||+.+. ..+.+.+++++|
T Consensus 315 ilaPT~~LA~Q~~~~l~~l~~~-~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~-----~~v~~~~l~lvV 388 (681)
T PRK10917 315 LMAPTEILAEQHYENLKKLLEP-LGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQ-----DDVEFHNLGLVI 388 (681)
T ss_pred EEeccHHHHHHHHHHHHHHHhh-cCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhc-----ccchhcccceEE
Confidence 9999999999999999998763 57899999999885433 334444 4999999998773 345688999999
Q ss_pred EccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCCCC
Q 008605 426 LDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505 (560)
Q Consensus 426 iDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~~ 505 (560)
|||+|++. . . .+..+......+++++||||+.+...... .+.+..+............+...++.....
T Consensus 389 IDE~Hrfg-~-~----qr~~l~~~~~~~~iL~~SATp~prtl~~~--~~g~~~~s~i~~~p~~r~~i~~~~~~~~~~--- 457 (681)
T PRK10917 389 IDEQHRFG-V-E----QRLALREKGENPHVLVMTATPIPRTLAMT--AYGDLDVSVIDELPPGRKPITTVVIPDSRR--- 457 (681)
T ss_pred Eechhhhh-H-H----HHHHHHhcCCCCCEEEEeCCCCHHHHHHH--HcCCCceEEEecCCCCCCCcEEEEeCcccH---
Confidence 99999874 2 1 22233334556899999999765543322 233322221111111122344443322110
Q ss_pred CCChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchH--------HHHHHHHHHHhh
Q 008605 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKVC--------FSYKCNNLFGFF 552 (560)
Q Consensus 506 ~~~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~--------~a~~la~~Lk~l 552 (560)
...++.+...+ ..+.+++|||+.++ .++.+++.|+..
T Consensus 458 --------~~~~~~i~~~~--~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~ 502 (681)
T PRK10917 458 --------DEVYERIREEI--AKGRQAYVVCPLIEESEKLDLQSAEETYEELQEA 502 (681)
T ss_pred --------HHHHHHHHHHH--HcCCcEEEEEcccccccchhHHHHHHHHHHHHHH
Confidence 11123333333 24579999999654 455667777653
No 61
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.90 E-value=1.1e-21 Score=207.37 Aligned_cols=237 Identities=16% Similarity=0.205 Sum_probs=154.0
Q ss_pred HHHHHHHHHHcCCc--EEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhhcC
Q 008605 294 IQAMAFPPVVEGKS--CILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKC 371 (560)
Q Consensus 294 iQ~~aip~il~g~d--vlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~~ 371 (560)
+|.++|+++.++.+ ++++||||||||++|++|++.. ..+++|++|+++|++|+++.++.+...
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~---------------~~~~~~~~P~~aL~~~~~~~~~~~~~~ 65 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG---------------ENDTIALYPTNALIEDQTEAIKEFVDV 65 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc---------------CCCEEEEeChHHHHHHHHHHHHHHHHh
Confidence 59999999998874 7889999999999999998841 235899999999999999999887631
Q ss_pred ---CCCceEEEEeCCcchH--HHH------------------HHhcCCCcEEEECHHHHHHHHHhcc-----c---cCCC
Q 008605 372 ---GVPFRSMVVTGGFRQK--TQL------------------ENLQEGVDVLIATPGRFMFLIKEGI-----L---QLIN 420 (560)
Q Consensus 372 ---~~~i~v~~l~gg~~~~--~~~------------------~~l~~~~~IlV~TP~~L~~ll~~~~-----~---~l~~ 420 (560)
..++.+..+.|..... ... ......++|+++||+.|..+++... . .+..
T Consensus 66 ~~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~ 145 (357)
T TIGR03158 66 FKPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTK 145 (357)
T ss_pred cCCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcC
Confidence 1346666666653221 000 0112358899999999987765421 1 2578
Q ss_pred ccEEEEccccccCCCCC-----hHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHh--CCCCeEEeCCC-c-------
Q 008605 421 LRCAILDEVDILFNDED-----FEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEV--FPDCKVVMGPG-M------- 485 (560)
Q Consensus 421 l~~LViDEah~ll~d~~-----f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~--~~~~~~i~~~~-~------- 485 (560)
+++|||||+|.+.. .. +...+..+++......+++++|||+++.+...+... +..+...+... .
T Consensus 146 ~~~iV~DE~H~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~ 224 (357)
T TIGR03158 146 FSTVIFDEFHLYDA-KQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPE 224 (357)
T ss_pred CCEEEEecccccCc-ccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChh
Confidence 99999999999873 22 112233444444445799999999999988888765 33332221111 0
Q ss_pred ----------cccCCCceeEEEEcCCCCCCCCChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhh
Q 008605 486 ----------HRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFF 552 (560)
Q Consensus 486 ----------~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l 552 (560)
....+.+.+.++. .... .......-...+.+.++....+++||||||++.|+.++..|+..
T Consensus 225 ~~~~~~~~~~~~~~~~i~~~~~~-~~~~-----~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~ 295 (357)
T TIGR03158 225 LEADNKTQSFRPVLPPVELELIP-APDF-----KEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQ 295 (357)
T ss_pred hhccccccccceeccceEEEEEe-CCch-----hHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhh
Confidence 0111345555544 2110 00000111122233333345679999999999999999999874
No 62
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.89 E-value=5.6e-23 Score=210.85 Aligned_cols=210 Identities=22% Similarity=0.330 Sum_probs=148.4
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHhhhcC--CCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCc
Q 008605 344 GSPRVVILAPTAELASQVLSNCRSLSKC--GVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421 (560)
Q Consensus 344 ~~~~aLil~PtreLa~Qi~~~l~~l~~~--~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l 421 (560)
+.|.+||+-|+|||+.|++++++++..+ ++.++..++.||.....|...+..+.+|+|+||+|+.+++..+.+.+..+
T Consensus 285 Nap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~c 364 (725)
T KOG0349|consen 285 NAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHC 364 (725)
T ss_pred CCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeee
Confidence 4588999999999999999988877543 35678889999999999999999999999999999999999999999999
Q ss_pred cEEEEccccccCCCCChHHHHHHHHhhCC------CCCcEEEEeccCCHHHHHHHHHhC-CCCeEEeCCCccccCCCcee
Q 008605 422 RCAILDEVDILFNDEDFEVALQSLISSSP------VTAQYLFVTATLPVEIYNKLVEVF-PDCKVVMGPGMHRISPGLEE 494 (560)
Q Consensus 422 ~~LViDEah~ll~d~~f~~~l~~Il~~~~------~~~Q~IllSATlp~~v~~~l~~~~-~~~~~i~~~~~~~~~~~i~~ 494 (560)
+++|+||+|.++ ..++...+.++...+| ...|.+++|||+...-...+.+.+ .-+..+--......+..+.+
T Consensus 365 rFlvlDead~lL-~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHh 443 (725)
T KOG0349|consen 365 RFLVLDEADLLL-GQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHH 443 (725)
T ss_pred EEEEecchhhhh-hcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhcc
Confidence 999999999999 6789999998887776 357999999998632222222222 21222222223333333444
Q ss_pred EEEEcCCCCC------------------CC-----CChhhh----hhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHH
Q 008605 495 FLVDCSGDQE------------------SD-----KTPETA----FLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNN 547 (560)
Q Consensus 495 ~~v~~~~~~~------------------~~-----~~~~~~----~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~ 547 (560)
.+..+...-. .. ..++.. ..-|-+.-...++++...++||||.|+.+|+.+.+
T Consensus 444 vv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer 523 (725)
T KOG0349|consen 444 VVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLER 523 (725)
T ss_pred ceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHH
Confidence 3333322100 00 001100 01122333344556677899999999999999999
Q ss_pred HHHhhcc
Q 008605 548 LFGFFSE 554 (560)
Q Consensus 548 ~Lk~l~~ 554 (560)
++++-+.
T Consensus 524 ~~~qkgg 530 (725)
T KOG0349|consen 524 MMNQKGG 530 (725)
T ss_pred HHHHcCC
Confidence 9987654
No 63
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.89 E-value=1.6e-21 Score=219.07 Aligned_cols=239 Identities=17% Similarity=0.135 Sum_probs=161.1
Q ss_pred hHHHHHHHHHHHcCCcEEEEcCCCCcchhh---------cHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHH
Q 008605 292 SQIQAMAFPPVVEGKSCILADQSGSGKTLA---------YLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVL 362 (560)
Q Consensus 292 t~iQ~~aip~il~g~dvlv~apTGSGKTla---------~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~ 362 (560)
-.+|.++++.+++|+++|++|+||||||.+ |++|.+..+..-. ......+++|++|||+||.|+.
T Consensus 166 ~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~------~~~~~~~ilvt~PrreLa~qi~ 239 (675)
T PHA02653 166 PDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID------PNFIERPIVLSLPRVALVRLHS 239 (675)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc------cccCCcEEEEECcHHHHHHHHH
Confidence 357999999999999999999999999997 4455555442110 1124568999999999999999
Q ss_pred HHHHhhhcC--CCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCCChHH
Q 008605 363 SNCRSLSKC--GVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEV 440 (560)
Q Consensus 363 ~~l~~l~~~--~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~ 440 (560)
..+.+..++ ..++.+.+.+||... .+........+|+|+|++. ....+.++++|||||||.+. ..+ +
T Consensus 240 ~~i~~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L-------~l~~L~~v~~VVIDEaHEr~-~~~--D 308 (675)
T PHA02653 240 ITLLKSLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKL-------TLNKLFDYGTVIIDEVHEHD-QIG--D 308 (675)
T ss_pred HHHHHHhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCcc-------cccccccCCEEEccccccCc-cch--h
Confidence 998776543 135677888999873 2223333468999999752 12257889999999999997 333 4
Q ss_pred HHHHHHhhC-CCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCCCCCCChhhhhhhHHHH
Q 008605 441 ALQSLISSS-PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSA 519 (560)
Q Consensus 441 ~l~~Il~~~-~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~K~~~ 519 (560)
.+..+++.. +..+|+++||||++.++.. +.+++.++..+..++ .....++++++........ ........+...
T Consensus 309 llL~llk~~~~~~rq~ILmSATl~~dv~~-l~~~~~~p~~I~I~g--rt~~pV~~~yi~~~~~~~~--~~~y~~~~k~~~ 383 (675)
T PHA02653 309 IIIAVARKHIDKIRSLFLMTATLEDDRDR-IKEFFPNPAFVHIPG--GTLFPISEVYVKNKYNPKN--KRAYIEEEKKNI 383 (675)
T ss_pred HHHHHHHHhhhhcCEEEEEccCCcHhHHH-HHHHhcCCcEEEeCC--CcCCCeEEEEeecCccccc--chhhhHHHHHHH
Confidence 455555443 3346999999999988755 578888777665543 2345577777654321100 000001122222
Q ss_pred HHHHHHh--CCCCcEEEEeCchHHHHHHHHHHHhh
Q 008605 520 LLQLIEK--SPVSKTIVFCNKVCFSYKCNNLFGFF 552 (560)
Q Consensus 520 L~~lL~~--~~~~ktIIFcnS~~~a~~la~~Lk~l 552 (560)
+..+... ...+++||||+++.+|+.+++.|+..
T Consensus 384 l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~ 418 (675)
T PHA02653 384 VTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKR 418 (675)
T ss_pred HHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhh
Confidence 2222221 23468999999999999999999865
No 64
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.89 E-value=2.7e-21 Score=218.41 Aligned_cols=165 Identities=22% Similarity=0.284 Sum_probs=128.2
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHcC------CcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEE
Q 008605 278 YMIESLKRQNFLRPSQIQAMAFPPVVEG------KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVIL 351 (560)
Q Consensus 278 ~ll~~L~~~g~~~pt~iQ~~aip~il~g------~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil 351 (560)
.+.+.+..++| .||++|.+||+.++.+ .+.+++++||||||++|++|++..+. .+.+++|+
T Consensus 224 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~------------~g~qvlil 290 (630)
T TIGR00643 224 LLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE------------AGYQVALM 290 (630)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH------------cCCcEEEE
Confidence 34455677899 7999999999999876 36899999999999999999998764 25689999
Q ss_pred cCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHH---HHHHhc-CCCcEEEECHHHHHHHHHhccccCCCccEEEEc
Q 008605 352 APTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT---QLENLQ-EGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427 (560)
Q Consensus 352 ~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~---~~~~l~-~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViD 427 (560)
+||++||.|+++.+++++.. .++++.+++|+..... ....+. ..++|+|+||+.+.+ ...+.+++++|||
T Consensus 291 aPT~~LA~Q~~~~~~~l~~~-~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVID 364 (630)
T TIGR00643 291 APTEILAEQHYNSLRNLLAP-LGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIID 364 (630)
T ss_pred CCHHHHHHHHHHHHHHHhcc-cCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEe
Confidence 99999999999999998763 5789999999987654 333443 348999999987742 4567899999999
Q ss_pred cccccCCCCChHHHHHHHHhhCC--CCCcEEEEeccCCHHH
Q 008605 428 EVDILFNDEDFEVALQSLISSSP--VTAQYLFVTATLPVEI 466 (560)
Q Consensus 428 Eah~ll~d~~f~~~l~~Il~~~~--~~~Q~IllSATlp~~v 466 (560)
|+|++. .. .. ..+..... ..+|+++||||+.+..
T Consensus 365 EaH~fg-~~-qr---~~l~~~~~~~~~~~~l~~SATp~prt 400 (630)
T TIGR00643 365 EQHRFG-VE-QR---KKLREKGQGGFTPHVLVMSATPIPRT 400 (630)
T ss_pred chhhcc-HH-HH---HHHHHhcccCCCCCEEEEeCCCCcHH
Confidence 999875 21 11 22222222 2679999999975543
No 65
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.88 E-value=1.8e-21 Score=205.38 Aligned_cols=220 Identities=15% Similarity=0.092 Sum_probs=138.0
Q ss_pred cEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcch
Q 008605 307 SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386 (560)
Q Consensus 307 dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~ 386 (560)
++++.||||||||++|++|++..+.. ..+.+++|++|+++|+.|+++.+..++.. .+..++++...
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~----------~~~~~ii~v~P~~~L~~q~~~~l~~~f~~----~~~~~~~~~~~ 66 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS----------QKADRVIIALPTRATINAMYRRAKELFGS----NLGLLHSSSSF 66 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh----------CCCCeEEEEeehHHHHHHHHHHHHHHhCc----ccEEeeccHHH
Confidence 58999999999999999999987643 23568999999999999999999987531 33344443221
Q ss_pred H------------HHHHHh------cCCCcEEEECHHHHHHHHHhcc----ccCC--CccEEEEccccccCCCCChHHHH
Q 008605 387 K------------TQLENL------QEGVDVLIATPGRFMFLIKEGI----LQLI--NLRCAILDEVDILFNDEDFEVAL 442 (560)
Q Consensus 387 ~------------~~~~~l------~~~~~IlV~TP~~L~~ll~~~~----~~l~--~l~~LViDEah~ll~d~~f~~~l 442 (560)
. ...... ....+|+|+||+++...+.... ..+. ..++|||||+|.+. +.++.. +
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~-~~~~~~-l 144 (358)
T TIGR01587 67 KRIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYD-EYTLAL-I 144 (358)
T ss_pred HHHhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCC-HHHHHH-H
Confidence 0 001111 1236899999999987765521 1111 23789999999998 544444 4
Q ss_pred HHHHhhC-CCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCCCCCCChhhhhhhHHHHHH
Q 008605 443 QSLISSS-PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALL 521 (560)
Q Consensus 443 ~~Il~~~-~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~K~~~L~ 521 (560)
..+++.+ ..+.|+++||||+|..+.+++............. .........+.+..+.... ..+...+.
T Consensus 145 ~~~l~~l~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----------~~~~~~l~ 213 (358)
T TIGR01587 145 LAVLEVLKDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLD-LKEERRFERHRFIKIESDK----------VGEISSLE 213 (358)
T ss_pred HHHHHHHHHcCCCEEEEecCchHHHHHHHhcCCCcccccCCC-Cccccccccccceeecccc----------ccCHHHHH
Confidence 5554444 3578999999999987766554432221111000 0000001122222211110 12344555
Q ss_pred HHHHh-CCCCcEEEEeCchHHHHHHHHHHHhhc
Q 008605 522 QLIEK-SPVSKTIVFCNKVCFSYKCNNLFGFFS 553 (560)
Q Consensus 522 ~lL~~-~~~~ktIIFcnS~~~a~~la~~Lk~l~ 553 (560)
++++. ...+++|||||++++|+.+++.|+..+
T Consensus 214 ~l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~ 246 (358)
T TIGR01587 214 RLLEFIKKGGKIAIIVNTVDRAQEFYQQLKENA 246 (358)
T ss_pred HHHHHhhCCCeEEEEECCHHHHHHHHHHHHhhc
Confidence 55544 245799999999999999999997753
No 66
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.87 E-value=1.5e-20 Score=216.10 Aligned_cols=222 Identities=16% Similarity=0.150 Sum_probs=158.3
Q ss_pred HHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCc
Q 008605 296 AMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPF 375 (560)
Q Consensus 296 ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i 375 (560)
.+.+.++.++++++++|+||||||++|.+++++... ...++||+.|||++|.|+++.+.+......+.
T Consensus 11 ~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~------------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~ 78 (812)
T PRK11664 11 PELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG------------INGKIIMLEPRRLAARNVAQRLAEQLGEKPGE 78 (812)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC------------cCCeEEEECChHHHHHHHHHHHHHHhCcccCc
Confidence 455566778899999999999999999999886421 12489999999999999999986543323456
Q ss_pred eEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccc-cCCCCCh-HHHHHHHHhhCCCCC
Q 008605 376 RSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDI-LFNDEDF-EVALQSLISSSPVTA 453 (560)
Q Consensus 376 ~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~-ll~d~~f-~~~l~~Il~~~~~~~ 453 (560)
.+++.+++.... ....+|+|+||++|++++... ..+.++++|||||+|. .+ +.++ ...+..+++.++.+.
T Consensus 79 ~VGy~vr~~~~~------~~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l-~~Dl~L~ll~~i~~~lr~~l 150 (812)
T PRK11664 79 TVGYRMRAESKV------GPNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSL-QADLALALLLDVQQGLRDDL 150 (812)
T ss_pred eEEEEecCcccc------CCCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCcccc-ccchHHHHHHHHHHhCCccc
Confidence 777777665422 234689999999999988864 4799999999999997 34 3333 233455667777889
Q ss_pred cEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCCCCCCChhhhhhhHHHHHHHHHHhCCCCcEE
Q 008605 454 QYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTI 533 (560)
Q Consensus 454 Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~K~~~L~~lL~~~~~~ktI 533 (560)
|+|+||||++... +.+++.+..++...+. ...++++|+.+...+. . . ......|..++.. ..+++|
T Consensus 151 qlilmSATl~~~~---l~~~~~~~~~I~~~gr---~~pV~~~y~~~~~~~~---~-~---~~v~~~l~~~l~~-~~g~iL 216 (812)
T PRK11664 151 KLLIMSATLDNDR---LQQLLPDAPVIVSEGR---SFPVERRYQPLPAHQR---F-D---EAVARATAELLRQ-ESGSLL 216 (812)
T ss_pred eEEEEecCCCHHH---HHHhcCCCCEEEecCc---cccceEEeccCchhhh---H-H---HHHHHHHHHHHHh-CCCCEE
Confidence 9999999999753 4677776655554432 1236666665543210 0 0 0111244555544 357899
Q ss_pred EEeCchHHHHHHHHHHHh
Q 008605 534 VFCNKVCFSYKCNNLFGF 551 (560)
Q Consensus 534 IFcnS~~~a~~la~~Lk~ 551 (560)
|||+++.+++.+++.|+.
T Consensus 217 VFlpg~~ei~~l~~~L~~ 234 (812)
T PRK11664 217 LFLPGVGEIQRVQEQLAS 234 (812)
T ss_pred EEcCCHHHHHHHHHHHHH
Confidence 999999999999999986
No 67
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.86 E-value=2.6e-20 Score=213.86 Aligned_cols=223 Identities=19% Similarity=0.164 Sum_probs=159.4
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhhcCCCC
Q 008605 295 QAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVP 374 (560)
Q Consensus 295 Q~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~ 374 (560)
-.+.+.++.++.++|++|+||||||.+|.+++++... .+.++||+.|+|++|.|+++.+.+......+
T Consensus 7 ~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~------------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g 74 (819)
T TIGR01970 7 LPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG------------IGGKIIMLEPRRLAARSAAQRLASQLGEAVG 74 (819)
T ss_pred HHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc------------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcC
Confidence 3455666778899999999999999999999987642 2458999999999999999998654332234
Q ss_pred ceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccc-cCCCCChHH-HHHHHHhhCCCC
Q 008605 375 FRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDI-LFNDEDFEV-ALQSLISSSPVT 452 (560)
Q Consensus 375 i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~-ll~d~~f~~-~l~~Il~~~~~~ 452 (560)
..|++.+++.. ......+|+|+||++|++++... ..+.++++|||||+|. ++ +.++.. .+..+...++.+
T Consensus 75 ~~VGy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L-~~Dl~L~ll~~i~~~lr~d 146 (819)
T TIGR01970 75 QTVGYRVRGEN------KVSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSL-DADLGLALALDVQSSLRED 146 (819)
T ss_pred cEEEEEEcccc------ccCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhh-ccchHHHHHHHHHHhcCCC
Confidence 55666555432 22345799999999999988764 5789999999999995 66 555543 345566667788
Q ss_pred CcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCCCCCCChhhhhhhHHHHHHHHHHhCCCCcE
Q 008605 453 AQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKT 532 (560)
Q Consensus 453 ~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~K~~~L~~lL~~~~~~kt 532 (560)
.|+|+||||++... +.+++.++.++...+. ...++++|..+...+. ........+..++... .+++
T Consensus 147 lqlIlmSATl~~~~---l~~~l~~~~vI~~~gr---~~pVe~~y~~~~~~~~-------~~~~v~~~l~~~l~~~-~g~i 212 (819)
T TIGR01970 147 LKILAMSATLDGER---LSSLLPDAPVVESEGR---SFPVEIRYLPLRGDQR-------LEDAVSRAVEHALASE-TGSI 212 (819)
T ss_pred ceEEEEeCCCCHHH---HHHHcCCCcEEEecCc---ceeeeeEEeecchhhh-------HHHHHHHHHHHHHHhc-CCcE
Confidence 99999999999764 4667766555544432 1235666665533210 0011223455555443 4789
Q ss_pred EEEeCchHHHHHHHHHHHh
Q 008605 533 IVFCNKVCFSYKCNNLFGF 551 (560)
Q Consensus 533 IIFcnS~~~a~~la~~Lk~ 551 (560)
||||+++.+++.+++.|+.
T Consensus 213 LVFlpg~~eI~~l~~~L~~ 231 (819)
T TIGR01970 213 LVFLPGQAEIRRVQEQLAE 231 (819)
T ss_pred EEEECCHHHHHHHHHHHHh
Confidence 9999999999999999986
No 68
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.86 E-value=7.1e-21 Score=207.94 Aligned_cols=235 Identities=16% Similarity=0.203 Sum_probs=172.3
Q ss_pred HHHHH-CCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHH
Q 008605 281 ESLKR-QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELAS 359 (560)
Q Consensus 281 ~~L~~-~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~ 359 (560)
..|++ +||..+.+-|.++|..+++|+|+++..|||+||++||.+|++-. ...+|||+|..+|..
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~---------------~G~TLVVSPLiSLM~ 71 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL---------------EGLTLVVSPLISLMK 71 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc---------------CCCEEEECchHHHHH
Confidence 44544 49999999999999999999999999999999999999999843 125999999999999
Q ss_pred HHHHHHHhhhcCCCCceEEEEeCCcchHHHHHH---hcC-CCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCC
Q 008605 360 QVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLEN---LQE-GVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFND 435 (560)
Q Consensus 360 Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~---l~~-~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d 435 (560)
.+.+.++.. ++.+..+.+..+..+.... +.. ..+++.-+||+|..---.+.+.-..+.++|||||||+. +
T Consensus 72 DQV~~l~~~-----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiS-q 145 (590)
T COG0514 72 DQVDQLEAA-----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCIS-Q 145 (590)
T ss_pred HHHHHHHHc-----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHh-h
Confidence 888888765 4677777776555444332 223 38999999999974332223335578899999999999 7
Q ss_pred CC--hHHHHHHHHhh---CCCCCcEEEEeccCCHHHHHHHHHhCCC--CeEEeCCCccccCCCceeEEEEcCCCCCCCCC
Q 008605 436 ED--FEVALQSLISS---SPVTAQYLFVTATLPVEIYNKLVEVFPD--CKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508 (560)
Q Consensus 436 ~~--f~~~l~~Il~~---~~~~~Q~IllSATlp~~v~~~l~~~~~~--~~~i~~~~~~~~~~~i~~~~v~~~~~~~~~~~ 508 (560)
|| |++.+.++-.. ++ +.+++.+|||-++.+...+.+.+.. +.++.. ....+++...++....
T Consensus 146 WGhdFRP~Y~~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~---sfdRpNi~~~v~~~~~------- 214 (590)
T COG0514 146 WGHDFRPDYRRLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRG---SFDRPNLALKVVEKGE------- 214 (590)
T ss_pred cCCccCHhHHHHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEe---cCCCchhhhhhhhccc-------
Confidence 86 99999887543 34 7899999999999999999888743 223222 2233444433332211
Q ss_pred hhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhh
Q 008605 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFF 552 (560)
Q Consensus 509 ~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l 552 (560)
...++..|.. +.....+..||||.|++.|+.+++.|+.-
T Consensus 215 ----~~~q~~fi~~-~~~~~~~~GIIYc~sRk~~E~ia~~L~~~ 253 (590)
T COG0514 215 ----PSDQLAFLAT-VLPQLSKSGIIYCLTRKKVEELAEWLRKN 253 (590)
T ss_pred ----HHHHHHHHHh-hccccCCCeEEEEeeHHhHHHHHHHHHHC
Confidence 0123332222 12445677999999999999999999876
No 69
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.84 E-value=1e-19 Score=200.70 Aligned_cols=239 Identities=15% Similarity=0.084 Sum_probs=149.2
Q ss_pred CCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHh
Q 008605 288 FLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS 367 (560)
Q Consensus 288 ~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~ 367 (560)
...|+++|.+|++.++.+++.++++|||+|||+++... ...+... ...++|||+||++|+.|+.+.+++
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l-~~~~~~~----------~~~~vLilvpt~eL~~Q~~~~l~~ 180 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLL-SRYYLEN----------YEGKVLIIVPTTSLVTQMIDDFVD 180 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHH-HHHHHhc----------CCCeEEEEECcHHHHHHHHHHHHH
Confidence 45899999999999999999999999999999976532 2222211 234899999999999999999998
Q ss_pred hhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCCChHHHHHHHHh
Q 008605 368 LSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447 (560)
Q Consensus 368 l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~l~~Il~ 447 (560)
+... ....+..+.+|.... .+.+|+|+||+++..... ..+.++++||+||||++. ... +..++.
T Consensus 181 ~~~~-~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~-~~~----~~~il~ 244 (501)
T PHA02558 181 YRLF-PREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFT-GKS----LTSIIT 244 (501)
T ss_pred hccc-cccceeEEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhccc-chh----HHHHHH
Confidence 8653 234455566665432 347999999999875432 246789999999999998 333 456666
Q ss_pred hCCCCCcEEEEeccCCHHHHHH--HHHhCCCCeEEeCCCc---cccCCCceeEEEEcCCCCC---------CCCCh--hh
Q 008605 448 SSPVTAQYLFVTATLPVEIYNK--LVEVFPDCKVVMGPGM---HRISPGLEEFLVDCSGDQE---------SDKTP--ET 511 (560)
Q Consensus 448 ~~~~~~Q~IllSATlp~~v~~~--l~~~~~~~~~i~~~~~---~~~~~~i~~~~v~~~~~~~---------~~~~~--~~ 511 (560)
.++...|+++||||++...... +...++.......... ......++...+.+..... ..... ..
T Consensus 245 ~~~~~~~~lGLTATp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~ 324 (501)
T PHA02558 245 KLDNCKFKFGLTGSLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYIT 324 (501)
T ss_pred hhhccceEEEEeccCCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHh
Confidence 6666789999999997532211 2223443222211100 0000011111111111000 00000 00
Q ss_pred hhhhHHHHHHHHHHh--CCCCcEEEEeCchHHHHHHHHHHHhhc
Q 008605 512 AFLNKKSALLQLIEK--SPVSKTIVFCNKVCFSYKCNNLFGFFS 553 (560)
Q Consensus 512 ~~~~K~~~L~~lL~~--~~~~ktIIFcnS~~~a~~la~~Lk~l~ 553 (560)
....+...+..++.. ..+.++||||+++++|+.+++.|+..+
T Consensus 325 ~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g 368 (501)
T PHA02558 325 SHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVY 368 (501)
T ss_pred ccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcC
Confidence 011233444444332 235689999999999999999998753
No 70
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.83 E-value=1.8e-19 Score=199.42 Aligned_cols=162 Identities=19% Similarity=0.260 Sum_probs=138.2
Q ss_pred HCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHH
Q 008605 285 RQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (560)
Q Consensus 285 ~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~ 364 (560)
.+.| .|-..|++||-++..|..|+|.|+|.+|||+++..++.-.- .++.++||.+|.++|.+|.++.
T Consensus 293 ~~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq------------~h~TR~iYTSPIKALSNQKfRD 359 (1248)
T KOG0947|consen 293 IYPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQ------------KHMTRTIYTSPIKALSNQKFRD 359 (1248)
T ss_pred hCCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHH------------hhccceEecchhhhhccchHHH
Confidence 3455 68899999999999999999999999999999766654322 2356899999999999999999
Q ss_pred HHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCCChHHHHHH
Q 008605 365 CRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444 (560)
Q Consensus 365 l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~l~~ 444 (560)
|+..+. .+.+++|+..... .+.++|+|.+.|..++.++...+.++.++|+||+|.+. |...+..++.
T Consensus 360 Fk~tF~-----DvgLlTGDvqinP-------eAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiN-D~eRGvVWEE 426 (1248)
T KOG0947|consen 360 FKETFG-----DVGLLTGDVQINP-------EASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYIN-DVERGVVWEE 426 (1248)
T ss_pred HHHhcc-----ccceeecceeeCC-------CcceEeehHHHHHHHHhcccchhhccceEEEeeeeecc-ccccccccee
Confidence 988754 3348899887654 47899999999999999988889999999999999998 8899999999
Q ss_pred HHhhCCCCCcEEEEeccCCHHHHHHHHHhC
Q 008605 445 LISSSPVTAQYLFVTATLPVEIYNKLVEVF 474 (560)
Q Consensus 445 Il~~~~~~~Q~IllSATlp~~v~~~l~~~~ 474 (560)
++-.+|.++++|++|||+|.... +..|+
T Consensus 427 ViIMlP~HV~~IlLSATVPN~~E--FA~WI 454 (1248)
T KOG0947|consen 427 VIIMLPRHVNFILLSATVPNTLE--FADWI 454 (1248)
T ss_pred eeeeccccceEEEEeccCCChHH--HHHHh
Confidence 99999999999999999996642 44555
No 71
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.82 E-value=4.1e-19 Score=203.21 Aligned_cols=246 Identities=20% Similarity=0.281 Sum_probs=177.6
Q ss_pred HHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHH
Q 008605 283 LKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVL 362 (560)
Q Consensus 283 L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~ 362 (560)
....+| .+-++|++|+-++..|.+|+|+||||+|||++...++...+.. +-+++|..|.++|.+|.+
T Consensus 113 ~~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~------------~qrviYTsPIKALsNQKy 179 (1041)
T COG4581 113 AREYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD------------GQRVIYTSPIKALSNQKY 179 (1041)
T ss_pred HHhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc------------CCceEeccchhhhhhhHH
Confidence 345677 6899999999999999999999999999999988887766653 335999999999999999
Q ss_pred HHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCCChHHHH
Q 008605 363 SNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVAL 442 (560)
Q Consensus 363 ~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~l 442 (560)
+.+...... ..-.+++++|+.+.+ .++.|+|.|.+.|..++.++...+..+.+||+||+|.|. |...+...
T Consensus 180 rdl~~~fgd-v~~~vGL~TGDv~IN-------~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~-D~eRG~VW 250 (1041)
T COG4581 180 RDLLAKFGD-VADMVGLMTGDVSIN-------PDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIG-DRERGVVW 250 (1041)
T ss_pred HHHHHHhhh-hhhhccceecceeeC-------CCCceEEeeHHHHHHHhccCcccccccceEEEEeeeecc-ccccchhH
Confidence 999876541 122468888888765 458999999999999999998899999999999999999 88999999
Q ss_pred HHHHhhCCCCCcEEEEeccCCHH--HHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCC-----CCCC----CCCh--
Q 008605 443 QSLISSSPVTAQYLFVTATLPVE--IYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSG-----DQES----DKTP-- 509 (560)
Q Consensus 443 ~~Il~~~~~~~Q~IllSATlp~~--v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~-----~~~~----~~~~-- 509 (560)
+.++-.+|.+.|+|+||||+|.. ...|+...-..+..++... ++..+ +.++++.-.. +++. +..+
T Consensus 251 EE~Ii~lP~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~-~RpvP-L~~~~~~~~~l~~lvde~~~~~~~~~~~a 328 (1041)
T COG4581 251 EEVIILLPDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTE-HRPVP-LEHFVYVGKGLFDLVDEKKKFNAENFPSA 328 (1041)
T ss_pred HHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeec-CCCCC-eEEEEecCCceeeeecccccchhhcchhh
Confidence 99999999999999999999854 3333332222333333332 22222 3333332211 0100 0000
Q ss_pred hhhhh-------------------------------hHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhh
Q 008605 510 ETAFL-------------------------------NKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFF 552 (560)
Q Consensus 510 ~~~~~-------------------------------~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l 552 (560)
...+. .+...+...+.....-++|+||-|+..|+..+..+..+
T Consensus 329 ~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~l 402 (1041)
T COG4581 329 NRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTL 402 (1041)
T ss_pred hhhhhccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhccc
Confidence 00000 00122344444445679999999999999999998754
No 72
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.81 E-value=2.3e-19 Score=194.56 Aligned_cols=236 Identities=18% Similarity=0.232 Sum_probs=178.8
Q ss_pred CChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhh
Q 008605 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (560)
Q Consensus 290 ~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~ 369 (560)
.+-|+|..||-++-++..|+|+|.|.+|||.++..+|.+.+...+ |+||..|.++|.+|.|+.+..-+
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQ------------RVIYTSPIKALSNQKYREl~~EF 196 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREKQ------------RVIYTSPIKALSNQKYRELLEEF 196 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhcC------------eEEeeChhhhhcchhHHHHHHHh
Confidence 578899999999999999999999999999999998888887543 79999999999999999987654
Q ss_pred cCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCCChHHHHHHHHhhC
Q 008605 370 KCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449 (560)
Q Consensus 370 ~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~ 449 (560)
+ .|++++|+.+... .+..+|+|.+.|..++.++.-.+..+.++|+||+|.|- |...+-.++.-+-.+
T Consensus 197 ~-----DVGLMTGDVTInP-------~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMR-DkERGVVWEETIIll 263 (1041)
T KOG0948|consen 197 K-----DVGLMTGDVTINP-------DASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMR-DKERGVVWEETIILL 263 (1041)
T ss_pred c-----ccceeecceeeCC-------CCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhcc-ccccceeeeeeEEec
Confidence 3 5788899987654 37899999999999999988889999999999999999 788888888777788
Q ss_pred CCCCcEEEEeccCCHHH--HHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCCC------CCCChhhhhhh------
Q 008605 450 PVTAQYLFVTATLPVEI--YNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE------SDKTPETAFLN------ 515 (560)
Q Consensus 450 ~~~~Q~IllSATlp~~v--~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~------~~~~~~~~~~~------ 515 (560)
|.+.+++++|||+|... .+|+...-..+..++-.....++ ++|+++....+.- ..++.+.+|..
T Consensus 264 P~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTP--LQHyifP~ggdGlylvVDek~~FrednF~~am~~l~ 341 (1041)
T KOG0948|consen 264 PDNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTP--LQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLR 341 (1041)
T ss_pred cccceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCc--ceeeeecCCCCeeEEEEecccccchHHHHHHHHHhh
Confidence 99999999999999654 23333333444333322223333 5666555444211 11222222211
Q ss_pred ----------------------------HHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhh
Q 008605 516 ----------------------------KKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFF 552 (560)
Q Consensus 516 ----------------------------K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l 552 (560)
.+..+...+-.....++|||+-|+++|+..|-.+..+
T Consensus 342 ~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kl 406 (1041)
T KOG0948|consen 342 KAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKL 406 (1041)
T ss_pred ccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccC
Confidence 1123334444456689999999999999999988765
No 73
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.81 E-value=2e-18 Score=163.46 Aligned_cols=184 Identities=35% Similarity=0.524 Sum_probs=148.8
Q ss_pred HCCCCCChHHHHHHHHHHHcC-CcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHH
Q 008605 285 RQNFLRPSQIQAMAFPPVVEG-KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLS 363 (560)
Q Consensus 285 ~~g~~~pt~iQ~~aip~il~g-~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~ 363 (560)
..++..|+++|.+++..+... +++++.++||+|||.++..+++..+... ...++||++|+++++.|+..
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~----------~~~~~l~~~p~~~~~~~~~~ 72 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRG----------KGKRVLVLVPTRELAEQWAE 72 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhccc----------CCCcEEEEeCCHHHHHHHHH
Confidence 356789999999999999998 9999999999999999999988877542 13479999999999999999
Q ss_pred HHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCC-cEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCCChHHHH
Q 008605 364 NCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGV-DVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVAL 442 (560)
Q Consensus 364 ~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~-~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~l 442 (560)
.+..+... .........++......+..+..+. +|+++|++.+...+.........++++|+||+|.+. ...+...+
T Consensus 73 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~-~~~~~~~~ 150 (201)
T smart00487 73 ELKKLGPS-LGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLL-DGGFGDQL 150 (201)
T ss_pred HHHHHhcc-CCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHh-cCCcHHHH
Confidence 99887653 2224444555555455555566666 999999999999998876677789999999999998 44788888
Q ss_pred HHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEE
Q 008605 443 QSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVV 480 (560)
Q Consensus 443 ~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i 480 (560)
..++..++...+++++|||++.........++.....+
T Consensus 151 ~~~~~~~~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~ 188 (201)
T smart00487 151 EKLLKLLPKNVQLLLLSATPPEEIENLLELFLNDPVFI 188 (201)
T ss_pred HHHHHhCCccceEEEEecCCchhHHHHHHHhcCCCEEE
Confidence 89988888889999999999988777666666654444
No 74
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=1.9e-19 Score=203.63 Aligned_cols=149 Identities=19% Similarity=0.241 Sum_probs=131.0
Q ss_pred cccCCCHHHHHHHH-----HCCCCCC---hHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCC
Q 008605 271 KELGCSDYMIESLK-----RQNFLRP---SQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKST 342 (560)
Q Consensus 271 ~~l~L~~~ll~~L~-----~~g~~~p---t~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~ 342 (560)
+.|++..++.+.+. .+||..| +|+|.++++.+..++++++.++||+|||++|++|++..+...
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g--------- 135 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTG--------- 135 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhc---------
Confidence 56788888888876 6799999 999999999999999999999999999999999999877532
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHH-HHHHHhccccCC--
Q 008605 343 SGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF-MFLIKEGILQLI-- 419 (560)
Q Consensus 343 ~~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L-~~ll~~~~~~l~-- 419 (560)
..++||+||++||.|+.+.+..+..+ .++++.+++||.....+...+ +++|+|+||++| .++++.+.+.++
T Consensus 136 ---~~v~IVTpTrELA~Qdae~m~~L~k~-lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~ 209 (970)
T PRK12899 136 ---KPVHLVTVNDYLAQRDCEWVGSVLRW-LGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKE 209 (970)
T ss_pred ---CCeEEEeCCHHHHHHHHHHHHHHHhh-cCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHH
Confidence 13889999999999999999999885 679999999999988877665 599999999999 999998766655
Q ss_pred -----CccEEEEccccccCC
Q 008605 420 -----NLRCAILDEVDILFN 434 (560)
Q Consensus 420 -----~l~~LViDEah~ll~ 434 (560)
.+.++||||||.|+-
T Consensus 210 ~~vqr~~~~~IIDEADsmLi 229 (970)
T PRK12899 210 EQVGRGFYFAIIDEVDSILI 229 (970)
T ss_pred HhhcccccEEEEechhhhhh
Confidence 458999999999874
No 75
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.80 E-value=6.4e-19 Score=199.16 Aligned_cols=260 Identities=17% Similarity=0.253 Sum_probs=182.1
Q ss_pred CCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC-CcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEc
Q 008605 274 GCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG-KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILA 352 (560)
Q Consensus 274 ~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g-~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~ 352 (560)
.+|.+-..++. |...++.+|.....+++.+ .|+++|||||+|||..+++-+++.+..+... .........+++|++
T Consensus 295 elP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~-dgs~nl~~fKIVYIA 371 (1674)
T KOG0951|consen 295 ELPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLRE-DGSVNLAPFKIVYIA 371 (1674)
T ss_pred CCcchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhccccc-ccceecccceEEEEe
Confidence 35555555543 6677999999999998876 4899999999999999999999998765221 111223456899999
Q ss_pred CCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHH-HHHHhcCCCcEEEECHHHHHHHHHhcc--ccCCCccEEEEccc
Q 008605 353 PTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT-QLENLQEGVDVLIATPGRFMFLIKEGI--LQLINLRCAILDEV 429 (560)
Q Consensus 353 PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~-~~~~l~~~~~IlV~TP~~L~~ll~~~~--~~l~~l~~LViDEa 429 (560)
|+++|++.+...+.+.... .+++|..++|+..... +. .+.+|+|+||+++.-+.++.. ...+-++++|+||+
T Consensus 372 PmKaLvqE~VgsfSkRla~-~GI~V~ElTgD~~l~~~qi----eeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEI 446 (1674)
T KOG0951|consen 372 PMKALVQEMVGSFSKRLAP-LGITVLELTGDSQLGKEQI----EETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEI 446 (1674)
T ss_pred eHHHHHHHHHHHHHhhccc-cCcEEEEecccccchhhhh----hcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhh
Confidence 9999999999877665553 6899999999876532 22 347999999999866555422 23446889999999
Q ss_pred cccCCCCChHHHHHHHHhhC-------CCCCcEEEEeccCC--HHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcC
Q 008605 430 DILFNDEDFEVALQSLISSS-------PVTAQYLFVTATLP--VEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCS 500 (560)
Q Consensus 430 h~ll~d~~f~~~l~~Il~~~-------~~~~Q~IllSATlp--~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~ 500 (560)
|.+- ...++.++.|..++ ...++++++|||+| .++..++.-. ..-.+.+.+... +..+.|.++.+.
T Consensus 447 HLLh--DdRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~-~~glf~fd~syR--pvPL~qq~Igi~ 521 (1674)
T KOG0951|consen 447 HLLH--DDRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVD-PEGLFYFDSSYR--PVPLKQQYIGIT 521 (1674)
T ss_pred hhcc--cccchHHHHHHHHHHHHhhhcccCceeeeecccCCchhhhHHHhccC-cccccccCcccC--cCCccceEeccc
Confidence 9986 35566665554332 34789999999999 4444433322 222333333332 334778888776
Q ss_pred CCCCCCCChhhhhhhHHHHHHH-HHHhCCCCcEEEEeCchHHHHHHHHHHHh
Q 008605 501 GDQESDKTPETAFLNKKSALLQ-LIEKSPVSKTIVFCNKVCFSYKCNNLFGF 551 (560)
Q Consensus 501 ~~~~~~~~~~~~~~~K~~~L~~-lL~~~~~~ktIIFcnS~~~a~~la~~Lk~ 551 (560)
. +.+...+....++.++ +++....+|+||||.||+++-++|++++.
T Consensus 522 e-----k~~~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd 568 (1674)
T KOG0951|consen 522 E-----KKPLKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRD 568 (1674)
T ss_pred c-----CCchHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHH
Confidence 4 3344434444445444 45555668999999999999999999983
No 76
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.80 E-value=1.7e-18 Score=199.05 Aligned_cols=241 Identities=15% Similarity=0.176 Sum_probs=174.9
Q ss_pred HHHHHH-HHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHH
Q 008605 278 YMIESL-KRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAE 356 (560)
Q Consensus 278 ~ll~~L-~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~Ptre 356 (560)
+++..+ ..+|+..+.+-|.++|..++.|+|++|.+|||.||++||.+|++- .++.+|||.|..+
T Consensus 251 ~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l---------------~~gitvVISPL~S 315 (941)
T KOG0351|consen 251 ELELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALL---------------LGGVTVVISPLIS 315 (941)
T ss_pred HHHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccc---------------cCCceEEeccHHH
Confidence 344444 556999999999999999999999999999999999999999973 2347999999999
Q ss_pred HHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHH---HhcC---CCcEEEECHHHHHHH--HHhccccCCC---ccEEE
Q 008605 357 LASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLE---NLQE---GVDVLIATPGRFMFL--IKEGILQLIN---LRCAI 425 (560)
Q Consensus 357 La~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~---~l~~---~~~IlV~TP~~L~~l--l~~~~~~l~~---l~~LV 425 (560)
|++.+...+.. .+|....+.++....++.. .+.. .++|+..||+++... +......+.. +.++|
T Consensus 316 Lm~DQv~~L~~-----~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~v 390 (941)
T KOG0351|consen 316 LMQDQVTHLSK-----KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFV 390 (941)
T ss_pred HHHHHHHhhhh-----cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEE
Confidence 97776655532 4678888888877754433 3333 489999999999732 2222233444 89999
Q ss_pred EccccccCCCCC--hHHHHHHHHhh--CCCCCcEEEEeccCCHHHHHHHHHhCC--CCeEEeCCCccccCCCceeEEEEc
Q 008605 426 LDEVDILFNDED--FEVALQSLISS--SPVTAQYLFVTATLPVEIYNKLVEVFP--DCKVVMGPGMHRISPGLEEFLVDC 499 (560)
Q Consensus 426 iDEah~ll~d~~--f~~~l~~Il~~--~~~~~Q~IllSATlp~~v~~~l~~~~~--~~~~i~~~~~~~~~~~i~~~~v~~ 499 (560)
|||||++. +|+ |++.++++... ..+.+.+|.+|||....+...+.+.+. ++.++. ....++++...+..-
T Consensus 391 IDEAHCVS-qWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~---~sfnR~NL~yeV~~k 466 (941)
T KOG0351|consen 391 IDEAHCVS-QWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFK---SSFNRPNLKYEVSPK 466 (941)
T ss_pred ecHHHHhh-hhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceec---ccCCCCCceEEEEec
Confidence 99999998 564 99998877432 233589999999999999988888774 444332 233445555444432
Q ss_pred CCCCCCCCChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhhc
Q 008605 500 SGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFFS 553 (560)
Q Consensus 500 ~~~~~~~~~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l~ 553 (560)
... ..-...+..+-..++...+||||.++.+|+.++..|+..+
T Consensus 467 ~~~-----------~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~ 509 (941)
T KOG0351|consen 467 TDK-----------DALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLG 509 (941)
T ss_pred cCc-----------cchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhc
Confidence 211 0112223333334677899999999999999999999876
No 77
>PRK13766 Hef nuclease; Provisional
Probab=99.79 E-value=1.5e-17 Score=192.76 Aligned_cols=161 Identities=22% Similarity=0.254 Sum_probs=127.6
Q ss_pred CCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Q 008605 287 NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (560)
Q Consensus 287 g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~ 366 (560)
+.-.|+++|.+++..++.+ |+++++|||+|||+++++++...+.. .+.++|||+||++|+.|+...++
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~-----------~~~~vLvl~Pt~~L~~Q~~~~~~ 79 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK-----------KGGKVLILAPTKPLVEQHAEFFR 79 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh-----------CCCeEEEEeCcHHHHHHHHHHHH
Confidence 3447899999999888876 99999999999999999988877631 34589999999999999999999
Q ss_pred hhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCCChHHHHHHHH
Q 008605 367 SLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446 (560)
Q Consensus 367 ~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~l~~Il 446 (560)
++... ....+..++|+...... ..+..+++|+|+||+.+...+..+.+.+.++++|||||||++.++..+...++...
T Consensus 80 ~~~~~-~~~~v~~~~g~~~~~~r-~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~ 157 (773)
T PRK13766 80 KFLNI-PEEKIVVFTGEVSPEKR-AELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYH 157 (773)
T ss_pred HHhCC-CCceEEEEeCCCCHHHH-HHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHH
Confidence 87642 24577778887766543 34445689999999999888777778889999999999999985545554444433
Q ss_pred hhCCCCCcEEEEeccC
Q 008605 447 SSSPVTAQYLFVTATL 462 (560)
Q Consensus 447 ~~~~~~~Q~IllSATl 462 (560)
......++++||||.
T Consensus 158 -~~~~~~~il~lTaTP 172 (773)
T PRK13766 158 -EDAKNPLVLGLTASP 172 (773)
T ss_pred -hcCCCCEEEEEEcCC
Confidence 334467899999997
No 78
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.79 E-value=6.6e-18 Score=187.87 Aligned_cols=129 Identities=22% Similarity=0.240 Sum_probs=106.3
Q ss_pred CCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Q 008605 287 NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (560)
Q Consensus 287 g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~ 366 (560)
|. .|+++|..+++.++.|+ |+.+.||+|||++|.+|++.... .++.++||+||++||.|.++.+.
T Consensus 101 g~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al------------~G~~v~VvTptreLA~qdae~~~ 165 (656)
T PRK12898 101 GQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAAL------------AGLPVHVITVNDYLAERDAELMR 165 (656)
T ss_pred CC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhh------------cCCeEEEEcCcHHHHHHHHHHHH
Confidence 44 79999999999999999 99999999999999999997653 35689999999999999999999
Q ss_pred hhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHH-HHHHhccc-------------------------cCCC
Q 008605 367 SLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFM-FLIKEGIL-------------------------QLIN 420 (560)
Q Consensus 367 ~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~-~ll~~~~~-------------------------~l~~ 420 (560)
.+..+ .++++.+++|+.... .+....+++|+|+|...+- ++|+.+.. ....
T Consensus 166 ~l~~~-lGlsv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~ 242 (656)
T PRK12898 166 PLYEA-LGLTVGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRG 242 (656)
T ss_pred HHHhh-cCCEEEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccc
Confidence 99875 689999999997643 4445567999999998874 45543311 1345
Q ss_pred ccEEEEccccccC
Q 008605 421 LRCAILDEVDILF 433 (560)
Q Consensus 421 l~~LViDEah~ll 433 (560)
+.+.||||+|.++
T Consensus 243 ~~~aIvDEvDSiL 255 (656)
T PRK12898 243 LHFAIVDEADSVL 255 (656)
T ss_pred cceeEeeccccee
Confidence 7889999999654
No 79
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.78 E-value=5.4e-18 Score=172.02 Aligned_cols=248 Identities=16% Similarity=0.206 Sum_probs=177.2
Q ss_pred ccCCCHHHHHHHHHC-CCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEE
Q 008605 272 ELGCSDYMIESLKRQ-NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVI 350 (560)
Q Consensus 272 ~l~L~~~ll~~L~~~-g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLi 350 (560)
+++.+.+....|++. ...+++|.|..+|++.+.|.+++++.|||.||++||.+|++.. ...+|+
T Consensus 75 ~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a---------------dg~alv 139 (695)
T KOG0353|consen 75 DFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA---------------DGFALV 139 (695)
T ss_pred CCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc---------------CCceEe
Confidence 345566666666543 6678999999999999999999999999999999999999853 335999
Q ss_pred EcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHh-------cCCCcEEEECHHHHHH---HHHh--ccccC
Q 008605 351 LAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL-------QEGVDVLIATPGRFMF---LIKE--GILQL 418 (560)
Q Consensus 351 l~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l-------~~~~~IlV~TP~~L~~---ll~~--~~~~l 418 (560)
|||...|+.++.-+++.++. ....+....+..+ .... .....+|..||+++.. ++++ +.+..
T Consensus 140 i~plislmedqil~lkqlgi-----~as~lnansske~-~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~ 213 (695)
T KOG0353|consen 140 ICPLISLMEDQILQLKQLGI-----DASMLNANSSKEE-AKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEA 213 (695)
T ss_pred echhHHHHHHHHHHHHHhCc-----chhhccCcccHHH-HHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhc
Confidence 99999999988888888754 3333333333222 1111 2346799999999863 2222 45567
Q ss_pred CCccEEEEccccccCCCCC--hHHHHHHH--HhhCCCCCcEEEEeccCCHHHHHHHHHhCCC-CeEEeCCCccccCCCce
Q 008605 419 INLRCAILDEVDILFNDED--FEVALQSL--ISSSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLE 493 (560)
Q Consensus 419 ~~l~~LViDEah~ll~d~~--f~~~l~~I--l~~~~~~~Q~IllSATlp~~v~~~l~~~~~~-~~~i~~~~~~~~~~~i~ 493 (560)
..++++.|||+|+.. +|+ |++.+..+ +++--++..+|+++||-...+.......+.- ..+.+. .....+++.
T Consensus 214 ~~~~~iaidevhccs-qwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~--a~fnr~nl~ 290 (695)
T KOG0353|consen 214 GFFKLIAIDEVHCCS-QWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFR--AGFNRPNLK 290 (695)
T ss_pred ceeEEEeecceeehh-hhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheee--cccCCCCce
Confidence 788999999999988 554 77777654 4554568899999999998888777666532 111122 234556666
Q ss_pred eEEEEcCCCCCCCCChhhhhhhHHHHHHHHHHh-CCCCcEEEEeCchHHHHHHHHHHHhhc
Q 008605 494 EFLVDCSGDQESDKTPETAFLNKKSALLQLIEK-SPVSKTIVFCNKVCFSYKCNNLFGFFS 553 (560)
Q Consensus 494 ~~~v~~~~~~~~~~~~~~~~~~K~~~L~~lL~~-~~~~ktIIFcnS~~~a~~la~~Lk~l~ 553 (560)
..+..-+..+ .+-.+.+..+++. +.+...||||-|+++|++++..|+..+
T Consensus 291 yev~qkp~n~----------dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~g 341 (695)
T KOG0353|consen 291 YEVRQKPGNE----------DDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHG 341 (695)
T ss_pred eEeeeCCCCh----------HHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcC
Confidence 6555544421 2445566666654 456789999999999999999998764
No 80
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.78 E-value=1.8e-18 Score=177.99 Aligned_cols=241 Identities=15% Similarity=0.176 Sum_probs=161.3
Q ss_pred HHHHHHHH-CCCCCC-hHHHHHHHHHHHcC-CcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCC
Q 008605 278 YMIESLKR-QNFLRP-SQIQAMAFPPVVEG-KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPT 354 (560)
Q Consensus 278 ~ll~~L~~-~g~~~p-t~iQ~~aip~il~g-~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~Pt 354 (560)
.+.++|++ +|+..+ ++.|++|+.++..+ +||.|++|||+||+|||.||.|.. +..+||+.|.
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~---------------~gITIV~SPL 70 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH---------------GGITIVISPL 70 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh---------------CCeEEEehHH
Confidence 45567765 488766 89999999998765 599999999999999999999843 3379999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHH------hcCCCcEEEECHHHHHHH----HHhccccCCCccEE
Q 008605 355 AELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLEN------LQEGVDVLIATPGRFMFL----IKEGILQLINLRCA 424 (560)
Q Consensus 355 reLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~------l~~~~~IlV~TP~~L~~l----l~~~~~~l~~l~~L 424 (560)
.+|+.++.+.+..|. +.+..+.+..+..+..+. -+....++.-||+....- +.+....-..+.||
T Consensus 71 iALIkDQiDHL~~LK-----Vp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~ 145 (641)
T KOG0352|consen 71 IALIKDQIDHLKRLK-----VPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYI 145 (641)
T ss_pred HHHHHHHHHHHHhcC-----CchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeE
Confidence 999998888887763 333333333333332222 234578999999986522 12223344568999
Q ss_pred EEccccccCCCCC--hHHHHHHHH--hhCCCCCcEEEEeccCCHHHHHHHHHhC--CCCeEEeCCCccccCCCceeEEEE
Q 008605 425 ILDEVDILFNDED--FEVALQSLI--SSSPVTAQYLFVTATLPVEIYNKLVEVF--PDCKVVMGPGMHRISPGLEEFLVD 498 (560)
Q Consensus 425 ViDEah~ll~d~~--f~~~l~~Il--~~~~~~~Q~IllSATlp~~v~~~l~~~~--~~~~~i~~~~~~~~~~~i~~~~v~ 498 (560)
|+||||++. +|+ |++++-++- +..-.++..+.++||-...+.+.+...+ .+++-++... .-..+.+++
T Consensus 146 vVDEAHCVS-QWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP-----~FR~NLFYD 219 (641)
T KOG0352|consen 146 VVDEAHCVS-QWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTP-----TFRDNLFYD 219 (641)
T ss_pred EechhhhHh-hhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCc-----chhhhhhHH
Confidence 999999998 665 888887763 3333578899999999999998887665 4455444221 111112222
Q ss_pred cCCCCCCCCChhhhhhhHHHHHHHHHHh----------C---CCCcEEEEeCchHHHHHHHHHHHhh
Q 008605 499 CSGDQESDKTPETAFLNKKSALLQLIEK----------S---PVSKTIVFCNKVCFSYKCNNLFGFF 552 (560)
Q Consensus 499 ~~~~~~~~~~~~~~~~~K~~~L~~lL~~----------~---~~~ktIIFcnS~~~a~~la~~Lk~l 552 (560)
+.- .....+-+..|.++... . ..+-.||||.|+++|+++|-.|...
T Consensus 220 ~~~--------K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~ 278 (641)
T KOG0352|consen 220 NHM--------KSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIA 278 (641)
T ss_pred HHH--------HHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhc
Confidence 110 00112333444444321 1 1356899999999999999888643
No 81
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.76 E-value=6.5e-17 Score=183.45 Aligned_cols=131 Identities=18% Similarity=0.268 Sum_probs=108.8
Q ss_pred CCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHH
Q 008605 286 QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (560)
Q Consensus 286 ~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l 365 (560)
+|. .|+++|..+++.+..|+ |+.+.||+|||++|++|++.... .+..++|++||++||.|.++.+
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al------------~G~~v~VvTpt~~LA~qd~e~~ 139 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNAL------------EGKGVHLITVNDYLAKRDAEEM 139 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHH------------cCCCeEEEeCCHHHHHHHHHHH
Confidence 466 89999999999998887 99999999999999999986554 2567999999999999999999
Q ss_pred HhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHH-HHHHHhcc------ccCCCccEEEEccccccC
Q 008605 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF-MFLIKEGI------LQLINLRCAILDEVDILF 433 (560)
Q Consensus 366 ~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L-~~ll~~~~------~~l~~l~~LViDEah~ll 433 (560)
..+..+ .++.+.++.|+.....+.+.. .+++|+++||+++ .++++.+. ..+..+.++||||||.|+
T Consensus 140 ~~l~~~-lGl~v~~i~g~~~~~~~r~~~-y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiL 212 (790)
T PRK09200 140 GQVYEF-LGLTVGLNFSDIDDASEKKAI-YEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSIL 212 (790)
T ss_pred HHHHhh-cCCeEEEEeCCCCcHHHHHHh-cCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccce
Confidence 999886 689999999998843333333 4599999999999 45555432 356789999999999876
No 82
>PRK09694 helicase Cas3; Provisional
Probab=99.76 E-value=5.7e-17 Score=186.70 Aligned_cols=175 Identities=19% Similarity=0.231 Sum_probs=119.7
Q ss_pred CCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHh
Q 008605 288 FLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS 367 (560)
Q Consensus 288 ~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~ 367 (560)
...|+|+|..+.........+|+.||||+|||.++++.+...+.. ....+++|.+||+++++|+++++++
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~----------~~~~gi~~aLPT~Atan~m~~Rl~~ 353 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQ----------GLADSIIFALPTQATANAMLSRLEA 353 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHh----------CCCCeEEEECcHHHHHHHHHHHHHH
Confidence 458999999886544445678999999999999987766543322 2245799999999999999999986
Q ss_pred hhcC-CCCceEEEEeCCcchHHHHHH---------------------hc---C---CCcEEEECHHHHHHHHHh-ccccC
Q 008605 368 LSKC-GVPFRSMVVTGGFRQKTQLEN---------------------LQ---E---GVDVLIATPGRFMFLIKE-GILQL 418 (560)
Q Consensus 368 l~~~-~~~i~v~~l~gg~~~~~~~~~---------------------l~---~---~~~IlV~TP~~L~~ll~~-~~~~l 418 (560)
+... .....+.+++|.......... +. + -.+|+|||.++++..+-. +...+
T Consensus 354 ~~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~l 433 (878)
T PRK09694 354 LASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFI 433 (878)
T ss_pred HHHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHH
Confidence 5431 123456777776542211100 00 1 168999999999854332 22222
Q ss_pred CC----ccEEEEccccccCCCCChHHHHHHHHhhC-CCCCcEEEEeccCCHHHHHHHHHhC
Q 008605 419 IN----LRCAILDEVDILFNDEDFEVALQSLISSS-PVTAQYLFVTATLPVEIYNKLVEVF 474 (560)
Q Consensus 419 ~~----l~~LViDEah~ll~d~~f~~~l~~Il~~~-~~~~Q~IllSATlp~~v~~~l~~~~ 474 (560)
.. -++|||||+|.+ +..+...+..+++.+ .....+|+||||+|....+.+.+.+
T Consensus 434 R~~~La~svvIiDEVHAy--D~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~ 492 (878)
T PRK09694 434 RGFGLGRSVLIVDEVHAY--DAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTY 492 (878)
T ss_pred HHHhhccCeEEEechhhC--CHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHh
Confidence 22 248999999988 455556667776654 3467899999999998887776654
No 83
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.75 E-value=6.6e-17 Score=181.99 Aligned_cols=133 Identities=15% Similarity=0.152 Sum_probs=100.0
Q ss_pred CCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHH
Q 008605 286 QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (560)
Q Consensus 286 ~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l 365 (560)
.|. .|+++|..+...+..| .|+.++||+|||++|++|++..... +..++||+|+++||.|.++.+
T Consensus 67 lgl-rpydVQlig~l~l~~G--~Iaem~TGeGKTLta~Lpa~l~aL~------------g~~V~VVTpn~yLA~Rdae~m 131 (762)
T TIGR03714 67 LGM-FPYDVQVLGAIVLHQG--NIAEMKTGEGKTLTATMPLYLNALT------------GKGAMLVTTNDYLAKRDAEEM 131 (762)
T ss_pred cCC-CccHHHHHHHHHhcCC--ceeEecCCcchHHHHHHHHHHHhhc------------CCceEEeCCCHHHHHHHHHHH
Confidence 354 6666666666555555 7999999999999999998765542 346999999999999999999
Q ss_pred HhhhcCCCCceEEEEeCCc---chHHHHHHhcCCCcEEEECHHHH-HHHHHhc------cccCCCccEEEEccccccCC
Q 008605 366 RSLSKCGVPFRSMVVTGGF---RQKTQLENLQEGVDVLIATPGRF-MFLIKEG------ILQLINLRCAILDEVDILFN 434 (560)
Q Consensus 366 ~~l~~~~~~i~v~~l~gg~---~~~~~~~~l~~~~~IlV~TP~~L-~~ll~~~------~~~l~~l~~LViDEah~ll~ 434 (560)
..+..+ .++.+.+++++. ......+....+++|+++||++| .+++..+ ...+..+.++||||||.|+-
T Consensus 132 ~~l~~~-LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILi 209 (762)
T TIGR03714 132 GPVYEW-LGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLL 209 (762)
T ss_pred HHHHhh-cCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhh
Confidence 998875 678888877652 12233334446799999999999 4555432 23467899999999998853
No 84
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.75 E-value=3.8e-17 Score=182.97 Aligned_cols=130 Identities=20% Similarity=0.261 Sum_probs=109.6
Q ss_pred CCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Q 008605 287 NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (560)
Q Consensus 287 g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~ 366 (560)
|. .|+++|..+.+.+..|+ |+.++||+|||++|.+|++..... +..++|++||++||.|.++.+.
T Consensus 54 g~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~------------G~~V~VvTpt~~LA~qdae~~~ 118 (745)
T TIGR00963 54 GM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT------------GKGVHVVTVNDYLAQRDAEWMG 118 (745)
T ss_pred CC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh------------CCCEEEEcCCHHHHHHHHHHHH
Confidence 54 79999999999888776 999999999999999999644332 3359999999999999999999
Q ss_pred hhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHH-HHHHHhc------cccCCCccEEEEccccccCC
Q 008605 367 SLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF-MFLIKEG------ILQLINLRCAILDEVDILFN 434 (560)
Q Consensus 367 ~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L-~~ll~~~------~~~l~~l~~LViDEah~ll~ 434 (560)
.+..+ .++++.+++|+.....+...+ .++|+++||++| .++++.+ ...+..+.++||||+|.|+-
T Consensus 119 ~l~~~-LGLsv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LI 190 (745)
T TIGR00963 119 QVYRF-LGLSVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILI 190 (745)
T ss_pred HHhcc-CCCeEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhH
Confidence 99885 689999999998876554443 489999999999 8888776 34678899999999998874
No 85
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.74 E-value=1.7e-16 Score=180.41 Aligned_cols=157 Identities=22% Similarity=0.270 Sum_probs=118.6
Q ss_pred CChHHHHHHHHHHHcC---CcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Q 008605 290 RPSQIQAMAFPPVVEG---KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (560)
Q Consensus 290 ~pt~iQ~~aip~il~g---~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~ 366 (560)
.+++.|.++++.+..+ +++++.++||||||++|+.++...+.. +.++|||+|+++|+.|+++.++
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~------------g~~vLvLvPt~~L~~Q~~~~l~ 211 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ------------GKQALVLVPEIALTPQMLARFR 211 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc------------CCeEEEEeCcHHHHHHHHHHHH
Confidence 6899999999999874 789999999999999998877766532 4579999999999999999998
Q ss_pred hhhcCCCCceEEEEeCCcchHHHH---HHhc-CCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCC--CCh--
Q 008605 367 SLSKCGVPFRSMVVTGGFRQKTQL---ENLQ-EGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFND--EDF-- 438 (560)
Q Consensus 367 ~l~~~~~~i~v~~l~gg~~~~~~~---~~l~-~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d--~~f-- 438 (560)
+.+ +..+..++|+.+..++. ..+. ..++|+|+|+..+. ..+.++++|||||+|...-. ...
T Consensus 212 ~~f----g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y 280 (679)
T PRK05580 212 ARF----GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRY 280 (679)
T ss_pred HHh----CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCC
Confidence 764 35788889887765443 3333 45899999998763 46789999999999976511 111
Q ss_pred -HHHHHHHHhhCCCCCcEEEEeccCCHHHHHHH
Q 008605 439 -EVALQSLISSSPVTAQYLFVTATLPVEIYNKL 470 (560)
Q Consensus 439 -~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l 470 (560)
...+ .+.+....+.|+|++|||++.+....+
T Consensus 281 ~~r~v-a~~ra~~~~~~~il~SATps~~s~~~~ 312 (679)
T PRK05580 281 HARDL-AVVRAKLENIPVVLGSATPSLESLANA 312 (679)
T ss_pred cHHHH-HHHHhhccCCCEEEEcCCCCHHHHHHH
Confidence 1122 223334568899999999886655443
No 86
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.72 E-value=4e-16 Score=183.59 Aligned_cols=221 Identities=16% Similarity=0.219 Sum_probs=137.2
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcC----CHHHHHHHHHHHHh-hh
Q 008605 295 QAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAP----TAELASQVLSNCRS-LS 369 (560)
Q Consensus 295 Q~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~P----treLa~Qi~~~l~~-l~ 369 (560)
..+.+.++..++.++|+|+||||||. .+|.+..-... .....+++.-| +++||.|+.+++.. ++
T Consensus 79 r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~---------g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG 147 (1294)
T PRK11131 79 KQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGR---------GVKGLIGHTQPRRLAARTVANRIAEELETELG 147 (1294)
T ss_pred HHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCC---------CCCCceeeCCCcHHHHHHHHHHHHHHHhhhhc
Confidence 34455556666678889999999999 57744321110 11112333335 56888888888865 33
Q ss_pred cCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEcccc-ccCCCCChHH-HHHHHHh
Q 008605 370 KCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVD-ILFNDEDFEV-ALQSLIS 447 (560)
Q Consensus 370 ~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah-~ll~d~~f~~-~l~~Il~ 447 (560)
. ..++.+ .... ....+++|+|+|||+|++.+.... .+.++++||||||| +++ +.+|.. .++.++.
T Consensus 148 ~-~VGY~v-------rf~~---~~s~~t~I~v~TpG~LL~~l~~d~-~Ls~~~~IIIDEAHERsL-n~DfLLg~Lk~lL~ 214 (1294)
T PRK11131 148 G-CVGYKV-------RFND---QVSDNTMVKLMTDGILLAEIQQDR-LLMQYDTIIIDEAHERSL-NIDFILGYLKELLP 214 (1294)
T ss_pred c-eeceee-------cCcc---ccCCCCCEEEEChHHHHHHHhcCC-ccccCcEEEecCcccccc-ccchHHHHHHHhhh
Confidence 2 122222 1111 113468999999999999988754 48999999999999 477 666654 3444443
Q ss_pred hCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCCCCCCChhhhhhhHHHHHHHHHH--
Q 008605 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIE-- 525 (560)
Q Consensus 448 ~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~K~~~L~~lL~-- 525 (560)
.. ++.|+|+||||++.+ .+.++|.+..++...+.. ..++.+|..+...+.. ...+.+..+...+.
T Consensus 215 ~r-pdlKvILmSATid~e---~fs~~F~~apvI~V~Gr~---~pVei~y~p~~~~~~~------~~~d~l~~ll~~V~~l 281 (1294)
T PRK11131 215 RR-PDLKVIITSATIDPE---RFSRHFNNAPIIEVSGRT---YPVEVRYRPIVEEADD------TERDQLQAIFDAVDEL 281 (1294)
T ss_pred cC-CCceEEEeeCCCCHH---HHHHHcCCCCEEEEcCcc---ccceEEEeecccccch------hhHHHHHHHHHHHHHH
Confidence 32 468999999999864 456677654444444321 2356666654332110 00122333333222
Q ss_pred -hCCCCcEEEEeCchHHHHHHHHHHHhh
Q 008605 526 -KSPVSKTIVFCNKVCFSYKCNNLFGFF 552 (560)
Q Consensus 526 -~~~~~ktIIFcnS~~~a~~la~~Lk~l 552 (560)
....+.+||||+++.+++.+++.|+..
T Consensus 282 ~~~~~GdILVFLpg~~EIe~lae~L~~~ 309 (1294)
T PRK11131 282 GREGPGDILIFMSGEREIRDTADALNKL 309 (1294)
T ss_pred hcCCCCCEEEEcCCHHHHHHHHHHHHhc
Confidence 234578999999999999999999864
No 87
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.67 E-value=3e-15 Score=158.17 Aligned_cols=163 Identities=23% Similarity=0.256 Sum_probs=133.6
Q ss_pred CCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Q 008605 287 NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (560)
Q Consensus 287 g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~ 366 (560)
+.-.++.+|.......+.+ |+|++.|||-|||+.+++-+..++... .+ ++|+++||+-|+.|.+..|+
T Consensus 12 ~~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~----------~~-kvlfLAPTKPLV~Qh~~~~~ 79 (542)
T COG1111 12 NTIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWF----------GG-KVLFLAPTKPLVLQHAEFCR 79 (542)
T ss_pred ccccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhc----------CC-eEEEecCCchHHHHHHHHHH
Confidence 3456788888887777764 999999999999999988888887653 23 89999999999999999999
Q ss_pred hhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCCChHHHHHHHH
Q 008605 367 SLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446 (560)
Q Consensus 367 ~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~l~~Il 446 (560)
+...- ..-.++.++|.....+..... ...+|+|+||..+..-+..+.+++.++.++|+||||+-.++..|....+..+
T Consensus 80 ~v~~i-p~~~i~~ltGev~p~~R~~~w-~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~ 157 (542)
T COG1111 80 KVTGI-PEDEIAALTGEVRPEEREELW-AKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYL 157 (542)
T ss_pred HHhCC-ChhheeeecCCCChHHHHHHH-hhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHH
Confidence 98762 556788999988876554433 3479999999999999999999999999999999999885555666666666
Q ss_pred hhCCCCCcEEEEeccCCH
Q 008605 447 SSSPVTAQYLFVTATLPV 464 (560)
Q Consensus 447 ~~~~~~~Q~IllSATlp~ 464 (560)
+. ..++.++++|||.-.
T Consensus 158 ~~-~k~~~ilgLTASPGs 174 (542)
T COG1111 158 RS-AKNPLILGLTASPGS 174 (542)
T ss_pred Hh-ccCceEEEEecCCCC
Confidence 55 357789999999853
No 88
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.67 E-value=2.6e-15 Score=170.56 Aligned_cols=128 Identities=23% Similarity=0.276 Sum_probs=105.0
Q ss_pred CChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhh
Q 008605 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (560)
Q Consensus 290 ~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~ 369 (560)
.|+++|...--++..| -|+.++||+|||++|.+|++..+.. +..++||+||++||.|.++.+..+.
T Consensus 82 ~~ydvQliGg~~Lh~G--~Iaem~TGeGKTL~a~Lpa~~~al~------------G~~V~VvTpn~yLA~qd~e~m~~l~ 147 (896)
T PRK13104 82 RHFDVQLIGGMVLHEG--NIAEMRTGEGKTLVATLPAYLNAIS------------GRGVHIVTVNDYLAKRDSQWMKPIY 147 (896)
T ss_pred CcchHHHhhhhhhccC--ccccccCCCCchHHHHHHHHHHHhc------------CCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 6778887765445444 4889999999999999999977643 2359999999999999999999998
Q ss_pred cCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHH-HHHHHhc-cccC-----CCccEEEEccccccCC
Q 008605 370 KCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF-MFLIKEG-ILQL-----INLRCAILDEVDILFN 434 (560)
Q Consensus 370 ~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L-~~ll~~~-~~~l-----~~l~~LViDEah~ll~ 434 (560)
.+ .++.+.+++|+.....+...+ .++|+|+||++| .++++.+ .+.+ ..+.++||||||.|+-
T Consensus 148 ~~-lGLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLI 216 (896)
T PRK13104 148 EF-LGLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILI 216 (896)
T ss_pred cc-cCceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhh
Confidence 86 689999999998877665544 589999999999 8888876 3334 5899999999998763
No 89
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.66 E-value=9.3e-16 Score=170.09 Aligned_cols=163 Identities=21% Similarity=0.252 Sum_probs=131.5
Q ss_pred CCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Q 008605 287 NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (560)
Q Consensus 287 g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~ 366 (560)
..-.++.+|.+....++ |+|+||++|||+|||.++..-++.++... ...++|+++|++-|+.|+...+.
T Consensus 59 ~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~----------p~~KiVF~aP~~pLv~QQ~a~~~ 127 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWR----------PKGKVVFLAPTRPLVNQQIACFS 127 (746)
T ss_pred CcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcC----------CcceEEEeeCCchHHHHHHHHHh
Confidence 44578899999998888 99999999999999999998888887653 34789999999999999986666
Q ss_pred hhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccc-cCCCccEEEEccccccCCCCChHHHHHHH
Q 008605 367 SLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGIL-QLINLRCAILDEVDILFNDEDFEVALQSL 445 (560)
Q Consensus 367 ~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~-~l~~l~~LViDEah~ll~d~~f~~~l~~I 445 (560)
.++. +..+....||.........+-...+|+|+||..|...|..+.. .|+.+.++||||||+-..+..|...++.+
T Consensus 128 ~~~~---~~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~ 204 (746)
T KOG0354|consen 128 IYLI---PYSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREY 204 (746)
T ss_pred hccC---cccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHH
Confidence 6653 3666666666443333334445689999999999988877543 36899999999999998777788888888
Q ss_pred HhhCCCCCcEEEEeccCC
Q 008605 446 ISSSPVTAQYLFVTATLP 463 (560)
Q Consensus 446 l~~~~~~~Q~IllSATlp 463 (560)
+.......|+|++|||+-
T Consensus 205 l~~k~~~~qILgLTASpG 222 (746)
T KOG0354|consen 205 LDLKNQGNQILGLTASPG 222 (746)
T ss_pred HHhhhccccEEEEecCCC
Confidence 877766669999999995
No 90
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.65 E-value=4.8e-15 Score=132.11 Aligned_cols=144 Identities=33% Similarity=0.449 Sum_probs=111.0
Q ss_pred CcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcc
Q 008605 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385 (560)
Q Consensus 306 ~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~ 385 (560)
+++++.++||+|||..++..+...... ....+++|++|++.++.|..+.+...... .+.+..+.+...
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~----------~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~ 68 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS----------LKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTS 68 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc----------ccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcc
Confidence 478999999999999988888776643 23568999999999999999988887643 567777777776
Q ss_pred hHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccC
Q 008605 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATL 462 (560)
Q Consensus 386 ~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATl 462 (560)
............+|+++|++.+...+..........+++||||+|.+. ...+...............+++++|||+
T Consensus 69 ~~~~~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~-~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 69 IKQQEKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLL-NQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred hhHHHHHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHh-hcchHHHHHHHHhhCCccceEEEEeccC
Confidence 665555556779999999999988877665556678999999999998 3443333222334445678999999995
No 91
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.64 E-value=1.2e-14 Score=164.90 Aligned_cols=129 Identities=23% Similarity=0.286 Sum_probs=106.2
Q ss_pred CCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Q 008605 287 NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (560)
Q Consensus 287 g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~ 366 (560)
|. .|+++|.-..-++..|+ |+.++||+|||+++.+|++-..+. +..+-|++||..||.|.++.+.
T Consensus 79 g~-~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~------------G~~V~IvTpn~yLA~rd~e~~~ 143 (830)
T PRK12904 79 GM-RHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALT------------GKGVHVVTVNDYLAKRDAEWMG 143 (830)
T ss_pred CC-CCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHc------------CCCEEEEecCHHHHHHHHHHHH
Confidence 44 78899988876666664 899999999999999999643332 2237799999999999999999
Q ss_pred hhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHH-HHHHHhcc------ccCCCccEEEEccccccC
Q 008605 367 SLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF-MFLIKEGI------LQLINLRCAILDEVDILF 433 (560)
Q Consensus 367 ~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L-~~ll~~~~------~~l~~l~~LViDEah~ll 433 (560)
.+..+ .++.+.+++|+.+..++...+ .++|+++||++| .++++.+. ..+..+.++||||||.|+
T Consensus 144 ~l~~~-LGlsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiL 214 (830)
T PRK12904 144 PLYEF-LGLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSIL 214 (830)
T ss_pred HHHhh-cCCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhhe
Confidence 99875 689999999998887766664 489999999999 78887654 236789999999999876
No 92
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.62 E-value=8.5e-15 Score=164.96 Aligned_cols=234 Identities=18% Similarity=0.101 Sum_probs=142.7
Q ss_pred CCChHHHHHHHHHHH-cC--CcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHH
Q 008605 289 LRPSQIQAMAFPPVV-EG--KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (560)
Q Consensus 289 ~~pt~iQ~~aip~il-~g--~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l 365 (560)
..++++|.+|+..+. +| +..++++|||+|||+..+..+. .+ +.++|||||+.+|+.|+.+.+
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~-~l--------------~k~tLILvps~~Lv~QW~~ef 318 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAAC-TV--------------KKSCLVLCTSAVSVEQWKQQF 318 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHH-Hh--------------CCCEEEEeCcHHHHHHHHHHH
Confidence 368999999998877 44 3789999999999999765443 22 124999999999999999999
Q ss_pred HhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHh--------ccccCCCccEEEEccccccCCCCC
Q 008605 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE--------GILQLINLRCAILDEVDILFNDED 437 (560)
Q Consensus 366 ~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~--------~~~~l~~l~~LViDEah~ll~d~~ 437 (560)
.++... ....+..++|+.... ......|+|+|+..+.....+ ..+.-....+||+||||++. .
T Consensus 319 ~~~~~l-~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lp-A-- 389 (732)
T TIGR00603 319 KMWSTI-DDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVP-A-- 389 (732)
T ss_pred HHhcCC-CCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEcccccc-H--
Confidence 988542 345566666654321 112368999999877533221 11222457899999999986 3
Q ss_pred hHHHHHHHHhhCCCCCcEEEEeccCCHHH--HHHHHHhCCCCeEEeCCCc------cccCCCceeEEEEcCCCC------
Q 008605 438 FEVALQSLISSSPVTAQYLFVTATLPVEI--YNKLVEVFPDCKVVMGPGM------HRISPGLEEFLVDCSGDQ------ 503 (560)
Q Consensus 438 f~~~l~~Il~~~~~~~Q~IllSATlp~~v--~~~l~~~~~~~~~i~~~~~------~~~~~~i~~~~v~~~~~~------ 503 (560)
...+.++..+. ....+++|||+.... ...+...++...+ ..+.. ...+.......+.+..+.
T Consensus 390 --~~fr~il~~l~-a~~RLGLTATP~ReD~~~~~L~~LiGP~vy-e~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~ 465 (732)
T TIGR00603 390 --AMFRRVLTIVQ-AHCKLGLTATLVREDDKITDLNFLIGPKLY-EANWMELQKKGFIANVQCAEVWCPMTPEFYREYLR 465 (732)
T ss_pred --HHHHHHHHhcC-cCcEEEEeecCcccCCchhhhhhhcCCeee-ecCHHHHHhCCccccceEEEEEecCCHHHHHHHHH
Confidence 33444555543 345799999996322 1123233332221 11110 111111112222222100
Q ss_pred --CCCC-ChhhhhhhHHHHHHHHHHhC--CCCcEEEEeCchHHHHHHHHHHH
Q 008605 504 --ESDK-TPETAFLNKKSALLQLIEKS--PVSKTIVFCNKVCFSYKCNNLFG 550 (560)
Q Consensus 504 --~~~~-~~~~~~~~K~~~L~~lL~~~--~~~ktIIFcnS~~~a~~la~~Lk 550 (560)
...+ ........|+..+..+++.+ .+.++||||++...++.++..|.
T Consensus 466 ~~~~~k~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~ 517 (732)
T TIGR00603 466 ENSRKRMLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG 517 (732)
T ss_pred hcchhhhHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC
Confidence 0000 00112235777777788765 67899999999999999888773
No 93
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.61 E-value=6.5e-15 Score=159.97 Aligned_cols=234 Identities=19% Similarity=0.139 Sum_probs=140.5
Q ss_pred CCChHHHHHHHHHHHc----CCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHH
Q 008605 289 LRPSQIQAMAFPPVVE----GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (560)
Q Consensus 289 ~~pt~iQ~~aip~il~----g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~ 364 (560)
..++++|++|+.++.. .+..++++|||+|||.+++..+.. + +..+|||||+++|+.|..+.
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~-~--------------~~~~Lvlv~~~~L~~Qw~~~ 99 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAE-L--------------KRSTLVLVPTKELLDQWAEA 99 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHH-h--------------cCCEEEEECcHHHHHHHHHH
Confidence 4699999999999988 889999999999999987654432 2 12399999999999999877
Q ss_pred HHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCCChHHHHHH
Q 008605 365 CRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444 (560)
Q Consensus 365 l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~l~~ 444 (560)
+...... .-.+..+.|+..... . ..|.|+|...+........+......+||+||||++. ...+......
T Consensus 100 ~~~~~~~--~~~~g~~~~~~~~~~------~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~-a~~~~~~~~~ 169 (442)
T COG1061 100 LKKFLLL--NDEIGIYGGGEKELE------P-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLP-APSYRRILEL 169 (442)
T ss_pred HHHhcCC--ccccceecCceeccC------C-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCC-cHHHHHHHHh
Confidence 7766432 223344444332211 1 3699999988876421122334468999999999998 4444444333
Q ss_pred HHhhCCCCCcEEEEeccCCHHHHHH---HHHhCCCCeEEeCCCcc----ccCCCceeEEEEcCCCCCCC--------CC-
Q 008605 445 LISSSPVTAQYLFVTATLPVEIYNK---LVEVFPDCKVVMGPGMH----RISPGLEEFLVDCSGDQESD--------KT- 508 (560)
Q Consensus 445 Il~~~~~~~Q~IllSATlp~~v~~~---l~~~~~~~~~i~~~~~~----~~~~~i~~~~v~~~~~~~~~--------~~- 508 (560)
+... ...++||||++...... +...++ +.+....... ..........+.+....... ..
T Consensus 170 ~~~~----~~~LGLTATp~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~ 244 (442)
T COG1061 170 LSAA----YPRLGLTATPEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFR 244 (442)
T ss_pred hhcc----cceeeeccCceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhh
Confidence 3222 22899999987443122 222222 1222111111 11111222222221110000 00
Q ss_pred -----------------hhhhhhhHHHHHHHHHHhC-CCCcEEEEeCchHHHHHHHHHHHhh
Q 008605 509 -----------------PETAFLNKKSALLQLIEKS-PVSKTIVFCNKVCFSYKCNNLFGFF 552 (560)
Q Consensus 509 -----------------~~~~~~~K~~~L~~lL~~~-~~~ktIIFcnS~~~a~~la~~Lk~l 552 (560)
...+...+...+..++..+ ...++||||.++.+++.++..|...
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~ 306 (442)
T COG1061 245 ELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAP 306 (442)
T ss_pred hhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCC
Confidence 0011123455556666655 4679999999999999999998754
No 94
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.60 E-value=9.6e-14 Score=164.18 Aligned_cols=234 Identities=18% Similarity=0.165 Sum_probs=143.4
Q ss_pred CCCCCChHHHH---HHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHH
Q 008605 286 QNFLRPSQIQA---MAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVL 362 (560)
Q Consensus 286 ~g~~~pt~iQ~---~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~ 362 (560)
..|...-|+.. +.+.++..++.+||+|+||||||. .+|.+..-.. .....++++.-|.|--|..++
T Consensus 60 ~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~~---------~~~~~~I~~tQPRRlAA~svA 128 (1283)
T TIGR01967 60 IRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTT--QLPKICLELG---------RGSHGLIGHTQPRRLAARTVA 128 (1283)
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHcC---------CCCCceEecCCccHHHHHHHH
Confidence 35554445543 445556566778899999999998 4565532111 011234555668887777777
Q ss_pred HHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEcccc-ccCCCCChHHH
Q 008605 363 SNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVD-ILFNDEDFEVA 441 (560)
Q Consensus 363 ~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah-~ll~d~~f~~~ 441 (560)
..+.+......+-.|++-.. ...+ ......|.|+|+|.|+..+.... .+..+++||||||| +++ +.+|...
T Consensus 129 ~RvA~elg~~lG~~VGY~vR---~~~~---~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL-~~D~LL~ 200 (1283)
T TIGR01967 129 QRIAEELGTPLGEKVGYKVR---FHDQ---VSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSL-NIDFLLG 200 (1283)
T ss_pred HHHHHHhCCCcceEEeeEEc---CCcc---cCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhc-cchhHHH
Confidence 66655432112223332221 1111 12457899999999999887654 48899999999999 477 5666553
Q ss_pred -HHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCCCCCCChhhhhhhHHHHH
Q 008605 442 -LQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSAL 520 (560)
Q Consensus 442 -l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~K~~~L 520 (560)
++.++... ++.|+|+||||++.. .+.++|.+..++...+.. ..++..|..+....... . .++...+
T Consensus 201 lLk~il~~r-pdLKlIlmSATld~~---~fa~~F~~apvI~V~Gr~---~PVev~Y~~~~~~~~~~---~---~~~~~~i 267 (1283)
T TIGR01967 201 YLKQLLPRR-PDLKIIITSATIDPE---RFSRHFNNAPIIEVSGRT---YPVEVRYRPLVEEQEDD---D---LDQLEAI 267 (1283)
T ss_pred HHHHHHhhC-CCCeEEEEeCCcCHH---HHHHHhcCCCEEEECCCc---ccceeEEecccccccch---h---hhHHHHH
Confidence 66665544 478999999999853 466777665455444321 22444454432211000 0 1222333
Q ss_pred H----HHHHhCCCCcEEEEeCchHHHHHHHHHHHhh
Q 008605 521 L----QLIEKSPVSKTIVFCNKVCFSYKCNNLFGFF 552 (560)
Q Consensus 521 ~----~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l 552 (560)
. .++.. ..+.+||||+++.+++.+++.|+..
T Consensus 268 ~~~I~~l~~~-~~GdILVFLpg~~EI~~l~~~L~~~ 302 (1283)
T TIGR01967 268 LDAVDELFAE-GPGDILIFLPGEREIRDAAEILRKR 302 (1283)
T ss_pred HHHHHHHHhh-CCCCEEEeCCCHHHHHHHHHHHHhc
Confidence 3 33333 4578999999999999999999864
No 95
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.58 E-value=7e-14 Score=154.05 Aligned_cols=137 Identities=21% Similarity=0.270 Sum_probs=96.1
Q ss_pred EEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHH
Q 008605 309 ILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388 (560)
Q Consensus 309 lv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~ 388 (560)
|+.++||||||++|+..+...+. .+.++|||+|+++|+.|+++.+++.+ +..+..++++.+..+
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~------------~g~~vLvlvP~i~L~~Q~~~~l~~~f----~~~v~vlhs~~~~~e 64 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLA------------LGKSVLVLVPEIALTPQMIQRFKYRF----GSQVAVLHSGLSDSE 64 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHH------------cCCeEEEEeCcHHHHHHHHHHHHHHh----CCcEEEEECCCCHHH
Confidence 46899999999999765544432 24579999999999999999998764 346777888776544
Q ss_pred H---HHHhc-CCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCC--Ch---HHHHHHHHhhCCCCCcEEEEe
Q 008605 389 Q---LENLQ-EGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDE--DF---EVALQSLISSSPVTAQYLFVT 459 (560)
Q Consensus 389 ~---~~~l~-~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~--~f---~~~l~~Il~~~~~~~Q~IllS 459 (560)
. +..+. ..++|+|+|+..+. ..+.++++|||||+|...-.. .. ...+..+. ....+.++|++|
T Consensus 65 r~~~~~~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~r-a~~~~~~vil~S 136 (505)
T TIGR00595 65 KLQAWRKVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYR-AKKFNCPVVLGS 136 (505)
T ss_pred HHHHHHHHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHH-HHhcCCCEEEEe
Confidence 3 33333 34799999998762 457899999999999865111 11 11222222 233578999999
Q ss_pred ccCCHHHHHH
Q 008605 460 ATLPVEIYNK 469 (560)
Q Consensus 460 ATlp~~v~~~ 469 (560)
||.+.+....
T Consensus 137 ATPsles~~~ 146 (505)
T TIGR00595 137 ATPSLESYHN 146 (505)
T ss_pred CCCCHHHHHH
Confidence 9987655433
No 96
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.55 E-value=2.4e-14 Score=160.30 Aligned_cols=185 Identities=20% Similarity=0.227 Sum_probs=142.3
Q ss_pred CCCHHHHH-HHHHCCCCCChHHHHHHH--HHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEE
Q 008605 274 GCSDYMIE-SLKRQNFLRPSQIQAMAF--PPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVI 350 (560)
Q Consensus 274 ~L~~~ll~-~L~~~g~~~pt~iQ~~ai--p~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLi 350 (560)
.+++.+.. .....|...++.||.+++ |.++.++|+|..+||+.|||++..+-++..+... +..++.
T Consensus 206 ~~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~-----------rr~~ll 274 (1008)
T KOG0950|consen 206 RLPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR-----------RRNVLL 274 (1008)
T ss_pred cCchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH-----------hhceeE
Confidence 34444444 456679999999999997 6788999999999999999999999998887754 335999
Q ss_pred EcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHh--ccccCCCccEEEEcc
Q 008605 351 LAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE--GILQLINLRCAILDE 428 (560)
Q Consensus 351 l~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~--~~~~l~~l~~LViDE 428 (560)
+.|..+.+++-...+..+... .++.+-..+|........ +.-++.|||-++-..+++. ..-.+..+++|||||
T Consensus 275 ilp~vsiv~Ek~~~l~~~~~~-~G~~ve~y~g~~~p~~~~----k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdE 349 (1008)
T KOG0950|consen 275 ILPYVSIVQEKISALSPFSID-LGFPVEEYAGRFPPEKRR----KRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDE 349 (1008)
T ss_pred ecceeehhHHHHhhhhhhccc-cCCcchhhcccCCCCCcc----cceeeeeeehHhhHhHHHHHHhcCCccccCcEEEee
Confidence 999999998888888877663 677777777766554332 3368999999998876655 233567899999999
Q ss_pred ccccCCCCChHHHHHHHHhhC-----CCCCcEEEEeccCCHHHHHHHHHhCCCC
Q 008605 429 VDILFNDEDFEVALQSLISSS-----PVTAQYLFVTATLPVEIYNKLVEVFPDC 477 (560)
Q Consensus 429 ah~ll~d~~f~~~l~~Il~~~-----~~~~Q~IllSATlp~~v~~~l~~~~~~~ 477 (560)
.|++. |.+.+..++.++..+ ....|+|+||||+|.. ..+..++...
T Consensus 350 lhmi~-d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~--~lL~~~L~A~ 400 (1008)
T KOG0950|consen 350 LHMIG-DKGRGAILELLLAKILYENLETSVQIIGMSATIPNN--SLLQDWLDAF 400 (1008)
T ss_pred eeeee-ccccchHHHHHHHHHHHhccccceeEeeeecccCCh--HHHHHHhhhh
Confidence 99999 888888888777543 2346799999999854 3455666543
No 97
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.54 E-value=2.8e-14 Score=134.79 Aligned_cols=151 Identities=22% Similarity=0.235 Sum_probs=101.4
Q ss_pred CChHHHHHHHHHHHc-------CCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHH
Q 008605 290 RPSQIQAMAFPPVVE-------GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVL 362 (560)
Q Consensus 290 ~pt~iQ~~aip~il~-------g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~ 362 (560)
+|+++|.+++..+.. .+++++.+|||||||.+++..+..... ++||++|+..|+.|..
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~---------------~~l~~~p~~~l~~Q~~ 67 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR---------------KVLIVAPNISLLEQWY 67 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC---------------EEEEEESSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc---------------ceeEecCHHHHHHHHH
Confidence 578999999988873 588999999999999998754443331 6999999999999999
Q ss_pred HHHHhhhcCCCCceEE------------EEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhc-----------cccCC
Q 008605 363 SNCRSLSKCGVPFRSM------------VVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG-----------ILQLI 419 (560)
Q Consensus 363 ~~l~~l~~~~~~i~v~------------~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~-----------~~~l~ 419 (560)
+.+..+... ..... ...................+++++|...|....... .....
T Consensus 68 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 145 (184)
T PF04851_consen 68 DEFDDFGSE--KYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKN 145 (184)
T ss_dssp HHHHHHSTT--SEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGG
T ss_pred HHHHHhhhh--hhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccc
Confidence 999666432 11111 011111111222233456899999999998776541 12344
Q ss_pred CccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCC
Q 008605 420 NLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLP 463 (560)
Q Consensus 420 ~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp 463 (560)
...+||+||||++..+.. .+.++. .....+|+||||++
T Consensus 146 ~~~~vI~DEaH~~~~~~~----~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 146 KFDLVIIDEAHHYPSDSS----YREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp SESEEEEETGGCTHHHHH----HHHHHH--SSCCEEEEEESS-S
T ss_pred cCCEEEEehhhhcCCHHH----HHHHHc--CCCCeEEEEEeCcc
Confidence 678999999998872211 444444 45677999999986
No 98
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.53 E-value=5.1e-13 Score=158.21 Aligned_cols=161 Identities=19% Similarity=0.161 Sum_probs=107.5
Q ss_pred CChHHHHHHHHHHH----cC-CcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHH
Q 008605 290 RPSQIQAMAFPPVV----EG-KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (560)
Q Consensus 290 ~pt~iQ~~aip~il----~g-~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~ 364 (560)
.++++|.+|+..+. .| +.++++++||||||.+++ .++.++... ....++|||+|+++|+.|+.+.
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai-~li~~L~~~---------~~~~rVLfLvDR~~L~~Qa~~~ 482 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAI-ALMYRLLKA---------KRFRRILFLVDRSALGEQAEDA 482 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHH-HHHHHHHhc---------CccCeEEEEecHHHHHHHHHHH
Confidence 58999999998765 33 579999999999998843 455555432 2345899999999999999999
Q ss_pred HHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHh-----ccccCCCccEEEEccccccCC-C---
Q 008605 365 CRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE-----GILQLINLRCAILDEVDILFN-D--- 435 (560)
Q Consensus 365 l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~-----~~~~l~~l~~LViDEah~ll~-d--- 435 (560)
|+.+... .......+++....... .......|+|+|...+...+.. ....+..+++||+||||+-.. +
T Consensus 483 F~~~~~~-~~~~~~~i~~i~~L~~~--~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~ 559 (1123)
T PRK11448 483 FKDTKIE-GDQTFASIYDIKGLEDK--FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEM 559 (1123)
T ss_pred HHhcccc-cccchhhhhchhhhhhh--cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCcccccc
Confidence 9876421 11111111111111111 1123478999999998765432 124567889999999998531 0
Q ss_pred ----C------ChHHHHHHHHhhCCCCCcEEEEeccCCHH
Q 008605 436 ----E------DFEVALQSLISSSPVTAQYLFVTATLPVE 465 (560)
Q Consensus 436 ----~------~f~~~l~~Il~~~~~~~Q~IllSATlp~~ 465 (560)
. .+...++.++.++. ...|+||||+...
T Consensus 560 ~~~~~~~~~~~~~~~~yr~iL~yFd--A~~IGLTATP~r~ 597 (1123)
T PRK11448 560 SEGELQFRDQLDYVSKYRRVLDYFD--AVKIGLTATPALH 597 (1123)
T ss_pred ccchhccchhhhHHHHHHHHHhhcC--ccEEEEecCCccc
Confidence 0 12456777887663 5689999998643
No 99
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.49 E-value=1.3e-12 Score=143.53 Aligned_cols=226 Identities=21% Similarity=0.316 Sum_probs=161.7
Q ss_pred CCHHHHHHH-HHCCCCCChHHHHHHHHHHHcC------CcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCE
Q 008605 275 CSDYMIESL-KRQNFLRPSQIQAMAFPPVVEG------KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (560)
Q Consensus 275 L~~~ll~~L-~~~g~~~pt~iQ~~aip~il~g------~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 347 (560)
....+++.+ ..+.| ++|..|++++..|..+ .+=++++.-|||||+++++.++..+. .|.+
T Consensus 247 ~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~------------~G~Q 313 (677)
T COG1200 247 ANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE------------AGYQ 313 (677)
T ss_pred ccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH------------cCCe
Confidence 445555554 66677 7999999999999865 35689999999999999999998874 4668
Q ss_pred EEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHH---HHHhcCC-CcEEEECHHHHHHHHHhccccCCCccE
Q 008605 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ---LENLQEG-VDVLIATPGRFMFLIKEGILQLINLRC 423 (560)
Q Consensus 348 aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~---~~~l~~~-~~IlV~TP~~L~~ll~~~~~~l~~l~~ 423 (560)
+..++||.-||.|.++.+.++... .+++|..++|....... ...+.+| .+|+|+|-. ++ ...+.++++.+
T Consensus 314 ~ALMAPTEILA~QH~~~~~~~l~~-~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHA----Li-Qd~V~F~~LgL 387 (677)
T COG1200 314 AALMAPTEILAEQHYESLRKWLEP-LGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHA----LI-QDKVEFHNLGL 387 (677)
T ss_pred eEEeccHHHHHHHHHHHHHHHhhh-cCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcch----hh-hcceeecceeE
Confidence 999999999999999999999874 57999999998765444 3344445 999999943 33 45678999999
Q ss_pred EEEccccccCCCCChHHHHHHHHhhCCC-CCcEEEEeccC-CHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCC
Q 008605 424 AILDEVDILFNDEDFEVALQSLISSSPV-TAQYLFVTATL-PVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSG 501 (560)
Q Consensus 424 LViDEah~ll~d~~f~~~l~~Il~~~~~-~~Q~IllSATl-p~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~ 501 (560)
+|+||=|+.. -.=+..+..... .+-+++||||. |..+ ....+.+..+.+.+........|....+...
T Consensus 388 VIiDEQHRFG------V~QR~~L~~KG~~~Ph~LvMTATPIPRTL---Alt~fgDldvS~IdElP~GRkpI~T~~i~~~- 457 (677)
T COG1200 388 VIIDEQHRFG------VHQRLALREKGEQNPHVLVMTATPIPRTL---ALTAFGDLDVSIIDELPPGRKPITTVVIPHE- 457 (677)
T ss_pred EEEecccccc------HHHHHHHHHhCCCCCcEEEEeCCCchHHH---HHHHhccccchhhccCCCCCCceEEEEeccc-
Confidence 9999999765 222444444444 56789999996 5543 4566777666555544444444555555432
Q ss_pred CCCCCCChhhhhhhHHHHHHHHHHh--CCCCcEEEEeCchHHHH
Q 008605 502 DQESDKTPETAFLNKKSALLQLIEK--SPVSKTIVFCNKVCFSY 543 (560)
Q Consensus 502 ~~~~~~~~~~~~~~K~~~L~~lL~~--~~~~ktIIFcnS~~~a~ 543 (560)
+...+++.++. ..+.|+.|.|+-+++.+
T Consensus 458 --------------~~~~v~e~i~~ei~~GrQaY~VcPLIeESE 487 (677)
T COG1200 458 --------------RRPEVYERIREEIAKGRQAYVVCPLIEESE 487 (677)
T ss_pred --------------cHHHHHHHHHHHHHcCCEEEEEeccccccc
Confidence 22334444332 25689999999776554
No 100
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.47 E-value=5.6e-12 Score=145.43 Aligned_cols=223 Identities=20% Similarity=0.192 Sum_probs=168.7
Q ss_pred CCCCChHHHHHHHHHHHcC------CcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHH
Q 008605 287 NFLRPSQIQAMAFPPVVEG------KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQ 360 (560)
Q Consensus 287 g~~~pt~iQ~~aip~il~g------~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Q 360 (560)
+| .-|+-|..||..+.+. .|=|+|+--|-|||.+++=+++..+. .+.++.|||||.-||+|
T Consensus 592 Py-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~------------~GKQVAvLVPTTlLA~Q 658 (1139)
T COG1197 592 PY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVM------------DGKQVAVLVPTTLLAQQ 658 (1139)
T ss_pred CC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhc------------CCCeEEEEcccHHhHHH
Confidence 44 5699999999998753 48899999999999998888877664 46789999999999999
Q ss_pred HHHHHHhhhcCCCCceEEEEeCCcchHHHHHHh---c-CCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCC
Q 008605 361 VLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDE 436 (560)
Q Consensus 361 i~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l---~-~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~ 436 (560)
.++.|++-+. +.+++|..+..-.+.+++...+ . ...||||||.- +| ...+.++++.+|||||-|+.. .
T Consensus 659 Hy~tFkeRF~-~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHr----LL-~kdv~FkdLGLlIIDEEqRFG--V 730 (1139)
T COG1197 659 HYETFKERFA-GFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHR----LL-SKDVKFKDLGLLIIDEEQRFG--V 730 (1139)
T ss_pred HHHHHHHHhc-CCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechH----hh-CCCcEEecCCeEEEechhhcC--c
Confidence 9999998877 4789999988777776665444 3 34999999943 33 446789999999999999875 3
Q ss_pred ChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCCCCCCChhhhhhhH
Q 008605 437 DFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNK 516 (560)
Q Consensus 437 ~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~K 516 (560)
..... ++.+..++-++-+|||.=+...++....+++..+|..+...+.+ |+.++...+.
T Consensus 731 k~KEk----LK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~p--V~T~V~~~d~--------------- 789 (1139)
T COG1197 731 KHKEK----LKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLP--VKTFVSEYDD--------------- 789 (1139)
T ss_pred cHHHH----HHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcc--eEEEEecCCh---------------
Confidence 33333 44445677799999997555557777788888888777655443 4544444332
Q ss_pred HHHHHHHHH-h-CCCCcEEEEeCchHHHHHHHHHHHhh
Q 008605 517 KSALLQLIE-K-SPVSKTIVFCNKVCFSYKCNNLFGFF 552 (560)
Q Consensus 517 ~~~L~~lL~-~-~~~~ktIIFcnS~~~a~~la~~Lk~l 552 (560)
..+.+.+. + ..++|+-..+|.++..++++..|+.+
T Consensus 790 -~~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~L 826 (1139)
T COG1197 790 -LLIREAILRELLRGGQVFYVHNRVESIEKKAERLREL 826 (1139)
T ss_pred -HHHHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHh
Confidence 33333332 2 35689999999999999999999886
No 101
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.46 E-value=6.3e-12 Score=141.83 Aligned_cols=233 Identities=21% Similarity=0.243 Sum_probs=148.9
Q ss_pred CCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Q 008605 287 NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (560)
Q Consensus 287 g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~ 366 (560)
|| .|+..|+-....+..|+++-+.||||.|||..-++..+.... .+.+++||+||..|+.|+++.+.
T Consensus 80 G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~------------kgkr~yii~PT~~Lv~Q~~~kl~ 146 (1187)
T COG1110 80 GF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAK------------KGKRVYIIVPTTTLVRQVYERLK 146 (1187)
T ss_pred CC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHh------------cCCeEEEEecCHHHHHHHHHHHH
Confidence 55 999999999999999999999999999999765554443332 35689999999999999999999
Q ss_pred hhhcCCCCceEEE-EeCCcchHH---HHHHhcC-CCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCC-----
Q 008605 367 SLSKCGVPFRSMV-VTGGFRQKT---QLENLQE-GVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDE----- 436 (560)
Q Consensus 367 ~l~~~~~~i~v~~-l~gg~~~~~---~~~~l~~-~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~----- 436 (560)
+++.....+.+.+ .++..+..+ ...++.+ +.||+|+|..-|...+.. +.-.+++++++|++|.++...
T Consensus 147 ~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~--L~~~kFdfifVDDVDA~LkaskNvDr 224 (1187)
T COG1110 147 KFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE--LSKLKFDFIFVDDVDAILKASKNVDR 224 (1187)
T ss_pred HHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH--hcccCCCEEEEccHHHHHhccccHHH
Confidence 9975322344443 455433333 2344443 589999998777654443 111368899999999776311
Q ss_pred -----ChHHH-------HHHHHhh------------------------CCCCCcEEEEeccCC-HHHHHHHHHhCCCCeE
Q 008605 437 -----DFEVA-------LQSLISS------------------------SPVTAQYLFVTATLP-VEIYNKLVEVFPDCKV 479 (560)
Q Consensus 437 -----~f~~~-------l~~Il~~------------------------~~~~~Q~IllSATlp-~~v~~~l~~~~~~~~~ 479 (560)
||... +..+... -.+..++|+.|||.. ......+.+.+.+..+
T Consensus 225 iL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgFev 304 (1187)
T COG1110 225 LLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGFEV 304 (1187)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCCcc
Confidence 22211 1111111 013468999999984 2222233333332222
Q ss_pred EeCCCccccCCCceeEEEEcCCCCCCCCChhhhhhhHHHHHHHHHHhCCCCcEEEEeCc---hHHHHHHHHHHHhhc
Q 008605 480 VMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNK---VCFSYKCNNLFGFFS 553 (560)
Q Consensus 480 i~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS---~~~a~~la~~Lk~l~ 553 (560)
+. ......||...++... -...+.++++... .-.|||++. ++.+++++++|+..+
T Consensus 305 --G~-~~~~LRNIvD~y~~~~---------------~~e~~~elvk~lG-~GgLIfV~~d~G~e~aeel~e~Lr~~G 362 (1187)
T COG1110 305 --GS-GGEGLRNIVDIYVESE---------------SLEKVVELVKKLG-DGGLIFVPIDYGREKAEELAEYLRSHG 362 (1187)
T ss_pred --Cc-cchhhhheeeeeccCc---------------cHHHHHHHHHHhC-CCeEEEEEcHHhHHHHHHHHHHHHhcC
Confidence 11 1223334554444431 2355566666654 359999999 999999999998864
No 102
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.46 E-value=1.4e-11 Score=124.90 Aligned_cols=227 Identities=16% Similarity=0.141 Sum_probs=150.6
Q ss_pred CChHHHHHHHHHHH----cCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHH
Q 008605 290 RPSQIQAMAFPPVV----EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (560)
Q Consensus 290 ~pt~iQ~~aip~il----~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l 365 (560)
++|+.|+.+-..+. +.+++||.|-||+|||... .+.++..+. .|.++.+.+|....+.+++.++
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMi-f~~i~~al~-----------~G~~vciASPRvDVclEl~~Rl 164 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMI-FQGIEQALN-----------QGGRVCIASPRVDVCLELYPRL 164 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhh-HHHHHHHHh-----------cCCeEEEecCcccchHHHHHHH
Confidence 78999998876654 5679999999999999874 455555543 3678999999999999999999
Q ss_pred HhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCCChHHHHHH-
Q 008605 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS- 444 (560)
Q Consensus 366 ~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~l~~- 444 (560)
+.-+. +..+.+++|+....-+ .+++|+|..+|+..-. .++++||||+|..- ..-.+.+..
T Consensus 165 k~aF~---~~~I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk~-------aFD~liIDEVDAFP--~~~d~~L~~A 225 (441)
T COG4098 165 KQAFS---NCDIDLLYGDSDSYFR-------APLVVATTHQLLRFKQ-------AFDLLIIDEVDAFP--FSDDQSLQYA 225 (441)
T ss_pred HHhhc---cCCeeeEecCCchhcc-------ccEEEEehHHHHHHHh-------hccEEEEecccccc--ccCCHHHHHH
Confidence 87653 4678899988765432 6899999888766544 46789999999864 111122222
Q ss_pred HHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCCCCCCChhhhhhhHH-HHHHHH
Q 008605 445 LISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKK-SALLQL 523 (560)
Q Consensus 445 Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~K~-~~L~~l 523 (560)
+.+......-+|.+|||.+..+...+... +...+..+......+-....++.+..-. ......|+ ..|..+
T Consensus 226 v~~ark~~g~~IylTATp~k~l~r~~~~g--~~~~~klp~RfH~~pLpvPkf~w~~~~~------k~l~r~kl~~kl~~~ 297 (441)
T COG4098 226 VKKARKKEGATIYLTATPTKKLERKILKG--NLRILKLPARFHGKPLPVPKFVWIGNWN------KKLQRNKLPLKLKRW 297 (441)
T ss_pred HHHhhcccCceEEEecCChHHHHHHhhhC--CeeEeecchhhcCCCCCCCceEEeccHH------HHhhhccCCHHHHHH
Confidence 22333456678999999998876544332 2222222222222222233344444311 01111222 257777
Q ss_pred HHhC--CCCcEEEEeCchHHHHHHHHHH-Hhhccc
Q 008605 524 IEKS--PVSKTIVFCNKVCFSYKCNNLF-GFFSEI 555 (560)
Q Consensus 524 L~~~--~~~ktIIFcnS~~~a~~la~~L-k~l~~~ 555 (560)
|+.+ .+.+++||+++++..++++..| +.+...
T Consensus 298 lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~ 332 (441)
T COG4098 298 LEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKE 332 (441)
T ss_pred HHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCcc
Confidence 7664 4589999999999999999999 444443
No 103
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.43 E-value=2.3e-12 Score=146.49 Aligned_cols=128 Identities=21% Similarity=0.250 Sum_probs=102.1
Q ss_pred CChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhh
Q 008605 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (560)
Q Consensus 290 ~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~ 369 (560)
.|+++|...--++. ..-|+.++||.|||++|.+|++...+. +..+.||+|+.+||.|..+.+..+.
T Consensus 82 ~~ydVQliGgl~L~--~G~IaEm~TGEGKTL~a~lp~~l~al~------------g~~VhIvT~ndyLA~RD~e~m~~l~ 147 (908)
T PRK13107 82 RHFDVQLLGGMVLD--SNRIAEMRTGEGKTLTATLPAYLNALT------------GKGVHVITVNDYLARRDAENNRPLF 147 (908)
T ss_pred CcCchHHhcchHhc--CCccccccCCCCchHHHHHHHHHHHhc------------CCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 67778876543443 445889999999999999999876653 3349999999999999999999998
Q ss_pred cCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHH-HHHHHhc-cccC-----CCccEEEEccccccCC
Q 008605 370 KCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF-MFLIKEG-ILQL-----INLRCAILDEVDILFN 434 (560)
Q Consensus 370 ~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L-~~ll~~~-~~~l-----~~l~~LViDEah~ll~ 434 (560)
.+ .++.+.++.++......... -.++|+++||+.| .++|+.+ .+.. ..+.++||||||.|+-
T Consensus 148 ~~-lGlsv~~i~~~~~~~~r~~~--Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLi 216 (908)
T PRK13107 148 EF-LGLTVGINVAGLGQQEKKAA--YNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILI 216 (908)
T ss_pred Hh-cCCeEEEecCCCCHHHHHhc--CCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhcc
Confidence 86 78999999998876443222 3689999999999 7888776 3333 6789999999998874
No 104
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.42 E-value=3e-12 Score=147.25 Aligned_cols=245 Identities=18% Similarity=0.194 Sum_probs=146.9
Q ss_pred CChHHHHHHHHHHHcC---C-cEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHH
Q 008605 290 RPSQIQAMAFPPVVEG---K-SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (560)
Q Consensus 290 ~pt~iQ~~aip~il~g---~-dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l 365 (560)
...+.|..++..+... . .+++.||||+|||++.+.+++..+... .....+.|++.|++.+++++++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~--------~~~~~r~i~vlP~~t~ie~~~~r~ 266 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK--------IKLKSRVIYVLPFRTIIEDMYRRA 266 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc--------ccccceEEEEccHHHHHHHHHHHH
Confidence 3488999999888754 3 678999999999999999998776542 125779999999999999999999
Q ss_pred HhhhcCCCCceEEEEeCCcchHHHHHH-----h---------cCCCcEEEECHHHHHHHHHh-cccc-C--CCccEEEEc
Q 008605 366 RSLSKCGVPFRSMVVTGGFRQKTQLEN-----L---------QEGVDVLIATPGRFMFLIKE-GILQ-L--INLRCAILD 427 (560)
Q Consensus 366 ~~l~~~~~~i~v~~l~gg~~~~~~~~~-----l---------~~~~~IlV~TP~~L~~ll~~-~~~~-l--~~l~~LViD 427 (560)
+.+.... .+.....+|.......... . .....++++||..+...... .... + -..+.+|+|
T Consensus 267 ~~~~~~~-~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlD 345 (733)
T COG1203 267 KEIFGLF-SVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILD 345 (733)
T ss_pred Hhhhccc-ccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhc
Confidence 9876521 1111112222211111000 0 01245667777666552211 1111 1 124679999
Q ss_pred cccccCCCCChHHHHHHHHhh-CCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCCCCC
Q 008605 428 EVDILFNDEDFEVALQSLISS-SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506 (560)
Q Consensus 428 Eah~ll~d~~f~~~l~~Il~~-~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~~~ 506 (560)
|+|.+. +......+..++.. ...+..+|++|||+|+...+.+...+.....+..... ..+......+......
T Consensus 346 E~h~~~-~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~--~~~~~~e~~~~~~~~~--- 419 (733)
T COG1203 346 EVHLYA-DETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAK--FCPKEDEPGLKRKERV--- 419 (733)
T ss_pred cHHhhc-ccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceecccc--ccccccccccccccch---
Confidence 999998 44234444444433 3457889999999999999999888865444332211 0000011111100000
Q ss_pred CChhhhhhhH--HHHHHHHHHh-CCCCcEEEEeCchHHHHHHHHHHHhhcc
Q 008605 507 KTPETAFLNK--KSALLQLIEK-SPVSKTIVFCNKVCFSYKCNNLFGFFSE 554 (560)
Q Consensus 507 ~~~~~~~~~K--~~~L~~lL~~-~~~~ktIIFcnS~~~a~~la~~Lk~l~~ 554 (560)
...+. ...+...... ..+++++|.|||+..|++++..|+..+.
T Consensus 420 -----~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~ 465 (733)
T COG1203 420 -----DVEDGPQEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGP 465 (733)
T ss_pred -----hhhhhhhHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCC
Confidence 00000 0111111111 3468999999999999999999998765
No 105
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.32 E-value=7.6e-11 Score=134.34 Aligned_cols=151 Identities=21% Similarity=0.198 Sum_probs=98.0
Q ss_pred ChHHHHHHHHHHH----c------CCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHH
Q 008605 291 PSQIQAMAFPPVV----E------GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQ 360 (560)
Q Consensus 291 pt~iQ~~aip~il----~------g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Q 360 (560)
+.++|.+|+..+. . .+..++.++||||||++.+..+...+ .. ...+++|||+|+++|..|
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~-~~---------~~~~~vl~lvdR~~L~~Q 308 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKAL-EL---------LKNPKVFFVVDRRELDYQ 308 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHH-hh---------cCCCeEEEEECcHHHHHH
Confidence 7889999987753 2 24689999999999998665443333 21 346789999999999999
Q ss_pred HHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhc-CCCcEEEECHHHHHHHHHhc--cccCCCc-cEEEEccccccCCCC
Q 008605 361 VLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ-EGVDVLIATPGRFMFLIKEG--ILQLINL-RCAILDEVDILFNDE 436 (560)
Q Consensus 361 i~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~-~~~~IlV~TP~~L~~ll~~~--~~~l~~l-~~LViDEah~ll~d~ 436 (560)
+.+.+..+... .. .+..+.......+. ....|+|+|..++...+... ......- -+||+||||+.. ..
T Consensus 309 ~~~~f~~~~~~--~~-----~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~-~~ 380 (667)
T TIGR00348 309 LMKEFQSLQKD--CA-----ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQ-YG 380 (667)
T ss_pred HHHHHHhhCCC--CC-----cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCcccc-ch
Confidence 99999887531 11 11112222223332 23689999999998644331 1111111 179999999876 22
Q ss_pred ChHHHHHHHHhhCCCCCcEEEEeccCC
Q 008605 437 DFEVALQSLISSSPVTAQYLFVTATLP 463 (560)
Q Consensus 437 ~f~~~l~~Il~~~~~~~Q~IllSATlp 463 (560)
.+...++ ..++ +..+++||||+-
T Consensus 381 ~~~~~l~---~~~p-~a~~lGfTaTP~ 403 (667)
T TIGR00348 381 ELAKNLK---KALK-NASFFGFTGTPI 403 (667)
T ss_pred HHHHHHH---hhCC-CCcEEEEeCCCc
Confidence 3333332 3343 578999999985
No 106
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.30 E-value=7e-11 Score=131.71 Aligned_cols=159 Identities=19% Similarity=0.212 Sum_probs=110.1
Q ss_pred CCChHHHHHHHHHHH----cCCc-EEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHH
Q 008605 289 LRPSQIQAMAFPPVV----EGKS-CILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLS 363 (560)
Q Consensus 289 ~~pt~iQ~~aip~il----~g~d-vlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~ 363 (560)
..|+.+|..||..+. .|++ +|+++.||+|||..+ +.++.+|.+.. .--++|+|+-+++|+.|.+.
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTA-iaii~rL~r~~---------~~KRVLFLaDR~~Lv~QA~~ 233 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTA-IAIIDRLIKSG---------WVKRVLFLADRNALVDQAYG 233 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeH-HHHHHHHHhcc---------hhheeeEEechHHHHHHHHH
Confidence 368899999987654 5553 999999999999874 46666766543 23479999999999999999
Q ss_pred HHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhc-----cccCCCccEEEEccccccCCCCCh
Q 008605 364 NCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG-----ILQLINLRCAILDEVDILFNDEDF 438 (560)
Q Consensus 364 ~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~-----~~~l~~l~~LViDEah~ll~d~~f 438 (560)
.+..+...+..++...-..+. ..+.|.|+|...+...+... .+....+++|||||||+-.
T Consensus 234 af~~~~P~~~~~n~i~~~~~~----------~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi----- 298 (875)
T COG4096 234 AFEDFLPFGTKMNKIEDKKGD----------TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI----- 298 (875)
T ss_pred HHHHhCCCccceeeeecccCC----------cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH-----
Confidence 988886543333332222221 14799999999998777653 3456679999999999754
Q ss_pred HHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhC
Q 008605 439 EVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVF 474 (560)
Q Consensus 439 ~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~ 474 (560)
....+.|+.++..-. ++++||+...+...-..+|
T Consensus 299 ~~~~~~I~dYFdA~~--~gLTATP~~~~d~~T~~~F 332 (875)
T COG4096 299 YSEWSSILDYFDAAT--QGLTATPKETIDRSTYGFF 332 (875)
T ss_pred HhhhHHHHHHHHHHH--HhhccCccccccccccccc
Confidence 233446666654332 3349998765444344455
No 107
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.27 E-value=3e-11 Score=138.00 Aligned_cols=236 Identities=17% Similarity=0.199 Sum_probs=159.6
Q ss_pred CCCChHHHHHHHHHHHcC-CcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Q 008605 288 FLRPSQIQAMAFPPVVEG-KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (560)
Q Consensus 288 ~~~pt~iQ~~aip~il~g-~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~ 366 (560)
|...+++|.+.++.+.+. .++++.+|+|||||.++.++++. +....+++|+.|.-+.+..+++.+.
T Consensus 1141 f~~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~-------------~~~~~~~vyi~p~~~i~~~~~~~w~ 1207 (1674)
T KOG0951|consen 1141 FQDFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR-------------PDTIGRAVYIAPLEEIADEQYRDWE 1207 (1674)
T ss_pred ccccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC-------------CccceEEEEecchHHHHHHHHHHHH
Confidence 334589999999998765 56999999999999999988875 1346689999999999999998887
Q ss_pred hhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCCC-----hHHH
Q 008605 367 SLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDED-----FEVA 441 (560)
Q Consensus 367 ~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~-----f~~~ 441 (560)
+-.....+..+..+.|.....-. +....+|+|+||+++..+ + ..+.+++.|.||+|.+.+..+ .-.
T Consensus 1208 ~~f~~~~G~~~~~l~ge~s~~lk---l~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~~g~v~evi~S- 1278 (1674)
T KOG0951|consen 1208 KKFSKLLGLRIVKLTGETSLDLK---LLQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGVYGAVYEVICS- 1278 (1674)
T ss_pred HhhccccCceEEecCCccccchH---HhhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhcccCCceEEEEee-
Confidence 66555578888888888776543 233479999999998666 2 567899999999999873111 112
Q ss_pred HHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCCCCCCChhhhhhhHHHHHH
Q 008605 442 LQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALL 521 (560)
Q Consensus 442 l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~K~~~L~ 521 (560)
++.|-.++.++.+++.+|..+... ..+.-.-....+-+.+.....+..+.-..+.....+ ...+ ......+
T Consensus 1279 ~r~ia~q~~k~ir~v~ls~~lana--~d~ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~------~~~~-am~~~~~ 1349 (1674)
T KOG0951|consen 1279 MRYIASQLEKKIRVVALSSSLANA--RDLIGASSSGVFNFSPSVRPVPLEIHIQSVDISHFE------SRML-AMTKPTY 1349 (1674)
T ss_pred HHHHHHHHHhheeEEEeehhhccc--hhhccccccceeecCcccCCCceeEEEEEeccchhH------HHHH-HhhhhHH
Confidence 566666777888999999887542 112111122344444444445544444444333211 1111 1111122
Q ss_pred HHHHh--CCCCcEEEEeCchHHHHHHHHHHHhhcc
Q 008605 522 QLIEK--SPVSKTIVFCNKVCFSYKCNNLFGFFSE 554 (560)
Q Consensus 522 ~lL~~--~~~~ktIIFcnS~~~a~~la~~Lk~l~~ 554 (560)
..+.+ ...++++||+++++.|..++..|-.++.
T Consensus 1350 ~ai~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~ 1384 (1674)
T KOG0951|consen 1350 TAIVRHAGNRKPAIVFLPTRKHARLVAVDLVTFSH 1384 (1674)
T ss_pred HHHHHHhcCCCCeEEEeccchhhhhhhhccchhhc
Confidence 22222 2468999999999999999988766543
No 108
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.25 E-value=8.3e-11 Score=137.70 Aligned_cols=96 Identities=23% Similarity=0.308 Sum_probs=73.4
Q ss_pred CHHHHHHHHHCCCCCChHHHHHHHH----HHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEE
Q 008605 276 SDYMIESLKRQNFLRPSQIQAMAFP----PVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVIL 351 (560)
Q Consensus 276 ~~~ll~~L~~~g~~~pt~iQ~~aip----~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil 351 (560)
++.+.+.+...||+ +++.|.+.+. ++..++++++.||||+|||++|++|++.... .+.++||.
T Consensus 232 ~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~------------~~~~vvi~ 298 (850)
T TIGR01407 232 SSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI------------TEKPVVIS 298 (850)
T ss_pred cHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc------------CCCeEEEE
Confidence 45677778888986 8899998666 5557889999999999999999999987653 13379999
Q ss_pred cCCHHHHHHHHH-HHHhhhcC-CCCceEEEEeCCc
Q 008605 352 APTAELASQVLS-NCRSLSKC-GVPFRSMVVTGGF 384 (560)
Q Consensus 352 ~PtreLa~Qi~~-~l~~l~~~-~~~i~v~~l~gg~ 384 (560)
+||++|..|+.. .+..+.+. +.++++.++.|+.
T Consensus 299 t~t~~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~ 333 (850)
T TIGR01407 299 TNTKVLQSQLLEKDIPLLNEILNFKINAALIKGKS 333 (850)
T ss_pred eCcHHHHHHHHHHHHHHHHHHcCCCceEEEEEcch
Confidence 999999999865 45544431 2346777666654
No 109
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.23 E-value=4.5e-11 Score=133.87 Aligned_cols=159 Identities=23% Similarity=0.311 Sum_probs=117.7
Q ss_pred CChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhh
Q 008605 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (560)
Q Consensus 290 ~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~ 369 (560)
.|..||.+.+..+-.+..++|+|||.+|||.+-.. ++...++. .....+||++||++|++|+...+....
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY-~iEKVLRe---------sD~~VVIyvaPtKaLVnQvsa~VyaRF 580 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFY-AIEKVLRE---------SDSDVVIYVAPTKALVNQVSANVYARF 580 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHH-HHHHHHhh---------cCCCEEEEecchHHHhhhhhHHHHHhh
Confidence 48899999999999999999999999999986433 44444433 234579999999999999988887665
Q ss_pred cCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHh---ccccCCCccEEEEccccccCCCCChHHHHHHHH
Q 008605 370 KCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE---GILQLINLRCAILDEVDILFNDEDFEVALQSLI 446 (560)
Q Consensus 370 ~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~---~~~~l~~l~~LViDEah~ll~d~~f~~~l~~Il 446 (560)
....-.+...+.|..+.+.+.. ...|+|+|+-|+.+-.++.. ..-+..+++++|+||+|.+. ...-....+.++
T Consensus 581 ~~~t~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG-~~ed~l~~Eqll 657 (1330)
T KOG0949|consen 581 DTKTFLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIG-NEEDGLLWEQLL 657 (1330)
T ss_pred ccCccccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhcc-ccccchHHHHHH
Confidence 4323344455555554443322 23599999999999988876 45578899999999999998 444344444444
Q ss_pred hhCCCCCcEEEEeccCC
Q 008605 447 SSSPVTAQYLFVTATLP 463 (560)
Q Consensus 447 ~~~~~~~Q~IllSATlp 463 (560)
-.. .+.++++|||+.
T Consensus 658 ~li--~CP~L~LSATig 672 (1330)
T KOG0949|consen 658 LLI--PCPFLVLSATIG 672 (1330)
T ss_pred Hhc--CCCeeEEecccC
Confidence 443 678999999994
No 110
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.23 E-value=6.2e-10 Score=127.52 Aligned_cols=226 Identities=14% Similarity=0.084 Sum_probs=144.0
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhhcCCCC
Q 008605 295 QAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVP 374 (560)
Q Consensus 295 Q~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~ 374 (560)
..+.+.++.+..-++|+++||||||...-..+++... .....+++.=|.|--|..++..+.+-.....+
T Consensus 55 ~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~-----------~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G 123 (845)
T COG1643 55 RDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL-----------GIAGKIGCTQPRRLAARSVAERVAEELGEKLG 123 (845)
T ss_pred HHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc-----------ccCCeEEecCchHHHHHHHHHHHHHHhCCCcC
Confidence 3445556666778999999999999864433333221 22345667779887777777766554332233
Q ss_pred ceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCCCh-HHHHHHHHhhCCCCC
Q 008605 375 FRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDF-EVALQSLISSSPVTA 453 (560)
Q Consensus 375 i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f-~~~l~~Il~~~~~~~ 453 (560)
-.|++..-..+. ......|-++|.|.|+..+.... .|+.+++|||||||.=.-+..+ .-.+..++...+.+.
T Consensus 124 ~~VGY~iRfe~~------~s~~Trik~mTdGiLlrei~~D~-~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DL 196 (845)
T COG1643 124 ETVGYSIRFESK------VSPRTRIKVMTDGILLREIQNDP-LLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDL 196 (845)
T ss_pred ceeeEEEEeecc------CCCCceeEEeccHHHHHHHhhCc-ccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCc
Confidence 334333221111 11236799999999999998755 4899999999999964422222 233455566677778
Q ss_pred cEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCCCCCCChhhhhhhHHHHHHHHHHhCCCCcEE
Q 008605 454 QYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTI 533 (560)
Q Consensus 454 Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~K~~~L~~lL~~~~~~ktI 533 (560)
.+|+||||+..+ .+.++|++..++..++.... ++.+|......+. ...+.+....++......+.+|
T Consensus 197 KiIimSATld~~---rfs~~f~~apvi~i~GR~fP---Vei~Y~~~~~~d~-------~l~~ai~~~v~~~~~~~~GdIL 263 (845)
T COG1643 197 KLIIMSATLDAE---RFSAYFGNAPVIEIEGRTYP---VEIRYLPEAEADY-------ILLDAIVAAVDIHLREGSGSIL 263 (845)
T ss_pred eEEEEecccCHH---HHHHHcCCCCEEEecCCccc---eEEEecCCCCcch-------hHHHHHHHHHHHhccCCCCCEE
Confidence 999999999875 47889988777766643222 3444433222110 0122223333333334578999
Q ss_pred EEeCchHHHHHHHHHHHh
Q 008605 534 VFCNKVCFSYKCNNLFGF 551 (560)
Q Consensus 534 IFcnS~~~a~~la~~Lk~ 551 (560)
||.+...+.+.+++.|+.
T Consensus 264 vFLpG~~EI~~~~~~L~~ 281 (845)
T COG1643 264 VFLPGQREIERTAEWLEK 281 (845)
T ss_pred EECCcHHHHHHHHHHHHh
Confidence 999999999999999987
No 111
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.22 E-value=6.1e-10 Score=125.85 Aligned_cols=223 Identities=19% Similarity=0.222 Sum_probs=138.1
Q ss_pred CCChHHHHHHHHHHHcC----CcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHH
Q 008605 289 LRPSQIQAMAFPPVVEG----KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (560)
Q Consensus 289 ~~pt~iQ~~aip~il~g----~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~ 364 (560)
..+++-|..|+..+... ...++.+.||||||.+|+=.+-..+.+ |..+|+|+|-.+|..|+...
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~------------GkqvLvLVPEI~Ltpq~~~r 264 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ------------GKQVLVLVPEIALTPQLLAR 264 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc------------CCEEEEEeccccchHHHHHH
Confidence 35788999999998765 568999999999999998666665543 55799999999999999999
Q ss_pred HHhhhcCCCCceEEEEeCCcchHHH---HHHh-cCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccC--CCCC-
Q 008605 365 CRSLSKCGVPFRSMVVTGGFRQKTQ---LENL-QEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILF--NDED- 437 (560)
Q Consensus 365 l~~l~~~~~~i~v~~l~gg~~~~~~---~~~l-~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll--~d~~- 437 (560)
++..+. .++.+++++.+..+. |.+. ...+.|+|||=-.+ ...|.++.+|||||-|--. .+.+
T Consensus 265 f~~rFg----~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-------F~Pf~~LGLIIvDEEHD~sYKq~~~p 333 (730)
T COG1198 265 FKARFG----AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-------FLPFKNLGLIIVDEEHDSSYKQEDGP 333 (730)
T ss_pred HHHHhC----CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-------cCchhhccEEEEeccccccccCCcCC
Confidence 998764 466667666554332 3333 35689999995444 4568899999999999532 1111
Q ss_pred --hHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCcc-ccCCCceeEEEEcCCCCCCCCChhhhhh
Q 008605 438 --FEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMH-RISPGLEEFLVDCSGDQESDKTPETAFL 514 (560)
Q Consensus 438 --f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~-~~~~~i~~~~v~~~~~~~~~~~~~~~~~ 514 (560)
...++-.+ +.-..++++|+-|||..-+-...+...-. .......... ...+ ...++++.......... ...
T Consensus 334 rYhARdvA~~-Ra~~~~~pvvLgSATPSLES~~~~~~g~y-~~~~L~~R~~~a~~p--~v~iiDmr~e~~~~~~~--lS~ 407 (730)
T COG1198 334 RYHARDVAVL-RAKKENAPVVLGSATPSLESYANAESGKY-KLLRLTNRAGRARLP--RVEIIDMRKEPLETGRS--LSP 407 (730)
T ss_pred CcCHHHHHHH-HHHHhCCCEEEecCCCCHHHHHhhhcCce-EEEEccccccccCCC--cceEEeccccccccCcc--CCH
Confidence 22233332 33335789999999998655443322211 1222222222 1122 33455555432111000 001
Q ss_pred hHHHHHHHHHHhCCCCcEEEEeCchHHH
Q 008605 515 NKKSALLQLIEKSPVSKTIVFCNKVCFS 542 (560)
Q Consensus 515 ~K~~~L~~lL~~~~~~ktIIFcnS~~~a 542 (560)
.-++.+.+-++ .+.++|||.|.+.-+
T Consensus 408 ~Ll~~i~~~l~--~geQ~llflnRRGys 433 (730)
T COG1198 408 ALLEAIRKTLE--RGEQVLLFLNRRGYA 433 (730)
T ss_pred HHHHHHHHHHh--cCCeEEEEEccCCcc
Confidence 12223333332 458999999987543
No 112
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.18 E-value=2.7e-10 Score=127.52 Aligned_cols=74 Identities=23% Similarity=0.406 Sum_probs=58.0
Q ss_pred HHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhh-c-CCCCceE
Q 008605 300 PPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS-K-CGVPFRS 377 (560)
Q Consensus 300 p~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~-~-~~~~i~v 377 (560)
.++..++.+++.|+||+|||++|++|++..+... .+.++||++||++|+.|+++.+..+. + .+.++++
T Consensus 11 ~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~----------~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~ 80 (636)
T TIGR03117 11 TSLRQKRIGMLEASTGVGKTLAMIMAALTMLKER----------PDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQA 80 (636)
T ss_pred HHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc----------cCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeE
Confidence 4455778899999999999999999999877531 24689999999999999999888776 2 1235666
Q ss_pred EEEeCC
Q 008605 378 MVVTGG 383 (560)
Q Consensus 378 ~~l~gg 383 (560)
.++.|.
T Consensus 81 ~~lkGr 86 (636)
T TIGR03117 81 GFFPGS 86 (636)
T ss_pred EEEECC
Confidence 655544
No 113
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.14 E-value=1.9e-09 Score=122.53 Aligned_cols=129 Identities=21% Similarity=0.274 Sum_probs=101.7
Q ss_pred CCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Q 008605 287 NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (560)
Q Consensus 287 g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~ 366 (560)
|. .|+++|..+--++..|+ |..+.||+|||++..+|++..... |..+-+++||.-||.|-++.+.
T Consensus 78 g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~------------G~~v~vvT~neyLA~Rd~e~~~ 142 (796)
T PRK12906 78 GL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT------------GKGVHVVTVNEYLSSRDATEMG 142 (796)
T ss_pred CC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc------------CCCeEEEeccHHHHHhhHHHHH
Confidence 44 78999988876676766 899999999999999998877654 4569999999999999999999
Q ss_pred hhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHH-HHHHhcc------ccCCCccEEEEccccccC
Q 008605 367 SLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFM-FLIKEGI------LQLINLRCAILDEVDILF 433 (560)
Q Consensus 367 ~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~-~ll~~~~------~~l~~l~~LViDEah~ll 433 (560)
.+..+ .++.+.++.++.+..+....+ .|+|+.+|...+- ++|+.+. .....+.+.||||+|.++
T Consensus 143 ~~~~~-LGl~vg~i~~~~~~~~r~~~y--~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiL 213 (796)
T PRK12906 143 ELYRW-LGLTVGLNLNSMSPDEKRAAY--NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSIL 213 (796)
T ss_pred HHHHh-cCCeEEEeCCCCCHHHHHHHh--cCCCeecCCccccccchhhccccchhhhhccCcceeeeccchhee
Confidence 99885 689999999887666544443 4899999998775 4444321 123467889999999765
No 114
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.12 E-value=3e-09 Score=124.21 Aligned_cols=157 Identities=21% Similarity=0.122 Sum_probs=95.5
Q ss_pred CChHHHHHHHHHHHcC--CcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHh
Q 008605 290 RPSQIQAMAFPPVVEG--KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS 367 (560)
Q Consensus 290 ~pt~iQ~~aip~il~g--~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~ 367 (560)
.|.|+|..+...++.. ..+|+.-..|.|||+-..+.+-..+.. ....++|||||. .|..|...++.+
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~----------g~~~rvLIVvP~-sL~~QW~~El~~ 220 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLT----------GRAERVLILVPE-TLQHQWLVEMLR 220 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHc----------CCCCcEEEEcCH-HHHHHHHHHHHH
Confidence 5999999998776543 368999999999998876554443332 123469999997 899999888865
Q ss_pred hhcCCCCceEEEEeCCcchHHHHH---HhcCCCcEEEECHHHHHHHHH-hccccCCCccEEEEccccccCCCCC-hHHHH
Q 008605 368 LSKCGVPFRSMVVTGGFRQKTQLE---NLQEGVDVLIATPGRFMFLIK-EGILQLINLRCAILDEVDILFNDED-FEVAL 442 (560)
Q Consensus 368 l~~~~~~i~v~~l~gg~~~~~~~~---~l~~~~~IlV~TP~~L~~ll~-~~~~~l~~l~~LViDEah~ll~d~~-f~~~l 442 (560)
.+. +...++.++. ...... ......+++|+|.+.+...-. ...+.-...++|||||||++-...+ -...+
T Consensus 221 kF~----l~~~i~~~~~-~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y 295 (956)
T PRK04914 221 RFN----LRFSLFDEER-YAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREY 295 (956)
T ss_pred HhC----CCeEEEcCcc-hhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHH
Confidence 432 2333332221 111000 111236899999887764211 1122223678999999999962111 11223
Q ss_pred HHHHhhCCCCCcEEEEeccC
Q 008605 443 QSLISSSPVTAQYLFVTATL 462 (560)
Q Consensus 443 ~~Il~~~~~~~Q~IllSATl 462 (560)
+.+.........++++|||+
T Consensus 296 ~~v~~La~~~~~~LLLTATP 315 (956)
T PRK04914 296 QVVEQLAEVIPGVLLLTATP 315 (956)
T ss_pred HHHHHHhhccCCEEEEEcCc
Confidence 33322222344689999998
No 115
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.11 E-value=8.5e-09 Score=112.93 Aligned_cols=224 Identities=16% Similarity=0.143 Sum_probs=139.3
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhhcCCCC
Q 008605 295 QAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVP 374 (560)
Q Consensus 295 Q~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~ 374 (560)
-.+.+..+.+.+-+||.++||||||.- +-+.+.+..+. ...++.+.-|.|--|.-++.+...-.....+
T Consensus 56 r~~il~~ve~nqvlIviGeTGsGKSTQ----ipQyL~eaG~~-------~~g~I~~TQPRRVAavslA~RVAeE~~~~lG 124 (674)
T KOG0922|consen 56 RDQILYAVEDNQVLIVIGETGSGKSTQ----IPQYLAEAGFA-------SSGKIACTQPRRVAAVSLAKRVAEEMGCQLG 124 (674)
T ss_pred HHHHHHHHHHCCEEEEEcCCCCCcccc----HhHHHHhcccc-------cCCcEEeecCchHHHHHHHHHHHHHhCCCcC
Confidence 345666677778899999999999975 23344443221 2223666778887666666555432222223
Q ss_pred ceEEEEe--CCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCC-ChHHHHHHHHhhCCC
Q 008605 375 FRSMVVT--GGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDE-DFEVALQSLISSSPV 451 (560)
Q Consensus 375 i~v~~l~--gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~-~f~~~l~~Il~~~~~ 451 (560)
-.|+... .+... ....|.+.|-|.|++-+.... .|+..++|||||||.-.-.. -..-.++.+++.- +
T Consensus 125 ~~VGY~IRFed~ts--------~~TrikymTDG~LLRE~l~Dp-~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R-~ 194 (674)
T KOG0922|consen 125 EEVGYTIRFEDSTS--------KDTRIKYMTDGMLLREILKDP-LLSKYSVIILDEAHERSLHTDILLGLLKKILKKR-P 194 (674)
T ss_pred ceeeeEEEecccCC--------CceeEEEecchHHHHHHhcCC-ccccccEEEEechhhhhhHHHHHHHHHHHHHhcC-C
Confidence 3333322 22211 125799999999987666543 47899999999999632000 1222334444332 3
Q ss_pred CCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCCCCCCChhhhhhhHHHHHHHHHHhCCCCc
Q 008605 452 TAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSK 531 (560)
Q Consensus 452 ~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~K~~~L~~lL~~~~~~k 531 (560)
+..+|++|||+..+ .+.++|.++.++..++.... ++..|..-+..+ -...-+..+.++-...+.+-
T Consensus 195 ~LklIimSATlda~---kfS~yF~~a~i~~i~GR~fP---Vei~y~~~p~~d--------Yv~a~~~tv~~Ih~~E~~GD 260 (674)
T KOG0922|consen 195 DLKLIIMSATLDAE---KFSEYFNNAPILTIPGRTFP---VEILYLKEPTAD--------YVDAALITVIQIHLTEPPGD 260 (674)
T ss_pred CceEEEEeeeecHH---HHHHHhcCCceEeecCCCCc---eeEEeccCCchh--------hHHHHHHHHHHHHccCCCCC
Confidence 57899999999854 58899988777766653322 343443322211 01233444555555567789
Q ss_pred EEEEeCchHHHHHHHHHHHhhc
Q 008605 532 TIVFCNKVCFSYKCNNLFGFFS 553 (560)
Q Consensus 532 tIIFcnS~~~a~~la~~Lk~l~ 553 (560)
+|||....++.+.+++.|.+..
T Consensus 261 ILvFLtGqeEIe~~~~~l~e~~ 282 (674)
T KOG0922|consen 261 ILVFLTGQEEIEAACELLRERA 282 (674)
T ss_pred EEEEeCCHHHHHHHHHHHHHHh
Confidence 9999999999999999998863
No 116
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.10 E-value=9.2e-10 Score=127.92 Aligned_cols=132 Identities=17% Similarity=0.338 Sum_probs=93.6
Q ss_pred CCCCCChHHHHHHHHH----HHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHH
Q 008605 286 QNFLRPSQIQAMAFPP----VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQV 361 (560)
Q Consensus 286 ~g~~~pt~iQ~~aip~----il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi 361 (560)
.|| .+++-|.+.... +..+..+++.|+||+|||++|++|++... .+.++||++||++|++|+
T Consensus 242 ~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~-------------~~~~vvI~t~T~~Lq~Ql 307 (820)
T PRK07246 242 LGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS-------------DQRQIIVSVPTKILQDQI 307 (820)
T ss_pred CCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc-------------CCCcEEEEeCcHHHHHHH
Confidence 355 689999885444 44677899999999999999999988643 245799999999999999
Q ss_pred H-HHHHhhhcCCCCceEEEEeCCcchHH-----------------------------------------------HHHHh
Q 008605 362 L-SNCRSLSKCGVPFRSMVVTGGFRQKT-----------------------------------------------QLENL 393 (560)
Q Consensus 362 ~-~~l~~l~~~~~~i~v~~l~gg~~~~~-----------------------------------------------~~~~l 393 (560)
. +.+..+.+. .++.+.++.|+.++-- .+..+
T Consensus 308 ~~~~i~~l~~~-~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i 386 (820)
T PRK07246 308 MAEEVKAIQEV-FHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQL 386 (820)
T ss_pred HHHHHHHHHHh-cCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHh
Confidence 4 667766653 4566666666542100 00110
Q ss_pred ------------------------cCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccC
Q 008605 394 ------------------------QEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILF 433 (560)
Q Consensus 394 ------------------------~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll 433 (560)
...++|+|+...-|+..+.... .+...+++||||||++.
T Consensus 387 ~~~~~~~~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~ 449 (820)
T PRK07246 387 KHDGNLSQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLM 449 (820)
T ss_pred hccCCCCCCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhH
Confidence 0126899999887776654433 36678999999999875
No 117
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.09 E-value=6.7e-09 Score=119.00 Aligned_cols=243 Identities=15% Similarity=0.131 Sum_probs=149.6
Q ss_pred hHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhhcC
Q 008605 292 SQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKC 371 (560)
Q Consensus 292 t~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~~ 371 (560)
+..+.+.+.++.+...++|++.||+|||.-.--.+++..... ....++|+.-|.|--|..+++++..=-..
T Consensus 175 ~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~---------~~~~~IicTQPRRIsAIsvAeRVa~ER~~ 245 (924)
T KOG0920|consen 175 YKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIES---------GAACNIICTQPRRISAISVAERVAKERGE 245 (924)
T ss_pred HHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhc---------CCCCeEEecCCchHHHHHHHHHHHHHhcc
Confidence 456778888888889999999999999987555555554433 13445777779987777777766432111
Q ss_pred CCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCCChHHHHHHHHhhCCC
Q 008605 372 GVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPV 451 (560)
Q Consensus 372 ~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~ 451 (560)
..+-.|+.-.+..... .....+++||.|.|++.+.. .-.+..+.++|+||+|.-.-+..|.-.+.+.+-...+
T Consensus 246 ~~g~~VGYqvrl~~~~------s~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p 318 (924)
T KOG0920|consen 246 SLGEEVGYQVRLESKR------SRETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNP 318 (924)
T ss_pred ccCCeeeEEEeeeccc------CCceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCC
Confidence 1222333332222211 12367999999999999887 4468899999999999865455565555555444557
Q ss_pred CCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCC-----ceeEEEEcCCCCCCCCChhhh-----------hhh
Q 008605 452 TAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPG-----LEEFLVDCSGDQESDKTPETA-----------FLN 515 (560)
Q Consensus 452 ~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~-----i~~~~v~~~~~~~~~~~~~~~-----------~~~ 515 (560)
+.++|+||||+.. +.+..+|+.+.++..++....... +.....+...++.....++.. ..-
T Consensus 319 ~LkvILMSAT~da---e~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 395 (924)
T KOG0920|consen 319 DLKVILMSATLDA---ELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEI 395 (924)
T ss_pred CceEEEeeeecch---HHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccc
Confidence 9999999999994 457889988777765543111100 000000000000000000000 012
Q ss_pred HHHHHHHHHH----hCCCCcEEEEeCchHHHHHHHHHHHhhc
Q 008605 516 KKSALLQLIE----KSPVSKTIVFCNKVCFSYKCNNLFGFFS 553 (560)
Q Consensus 516 K~~~L~~lL~----~~~~~ktIIFcnS~~~a~~la~~Lk~l~ 553 (560)
....+.+++. ....+.+|||.+...+...+.+.|....
T Consensus 396 d~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~ 437 (924)
T KOG0920|consen 396 DYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNL 437 (924)
T ss_pred cHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhcc
Confidence 2333334333 2346899999999999999999997643
No 118
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.98 E-value=4.5e-08 Score=109.68 Aligned_cols=129 Identities=21% Similarity=0.242 Sum_probs=102.1
Q ss_pred CCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Q 008605 287 NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (560)
Q Consensus 287 g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~ 366 (560)
|. .|+++|..+.-.++.|+ |+.+.||+|||++..+|++..... |..+.|++|+.-||.|-++.+.
T Consensus 76 g~-r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~------------G~~VhvvT~NdyLA~RDae~m~ 140 (764)
T PRK12326 76 GL-RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQ------------GRRVHVITVNDYLARRDAEWMG 140 (764)
T ss_pred CC-CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHc------------CCCeEEEcCCHHHHHHHHHHHH
Confidence 44 79999999998888774 779999999999999999876653 4569999999999999999999
Q ss_pred hhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHH-HHHHhcc------ccCCCccEEEEccccccC
Q 008605 367 SLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFM-FLIKEGI------LQLINLRCAILDEVDILF 433 (560)
Q Consensus 367 ~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~-~ll~~~~------~~l~~l~~LViDEah~ll 433 (560)
.+..+ .++.+.++.++.+..+....+ .|||+.+|..-+- ++|+.+. .....+.+.||||+|.++
T Consensus 141 ~ly~~-LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiL 211 (764)
T PRK12326 141 PLYEA-LGLTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVL 211 (764)
T ss_pred HHHHh-cCCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhhe
Confidence 98875 789999999887766544443 4899999987764 3443321 123557899999999766
No 119
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.95 E-value=1.1e-08 Score=105.50 Aligned_cols=73 Identities=27% Similarity=0.279 Sum_probs=57.3
Q ss_pred CChHHHHHH----HHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHH
Q 008605 290 RPSQIQAMA----FPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (560)
Q Consensus 290 ~pt~iQ~~a----ip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l 365 (560)
.|+|.|.+. +..+..|.++++.||||+|||++|++|++..+..... .....+++|+++|..+..|....+
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~------~~~~~kvi~~t~T~~~~~q~i~~l 81 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPE------RIQKIKLIYLSRTVSEIEKRLEEL 81 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcc------cccccceeEEeccHHHHHHHHHHH
Confidence 369999994 4456678999999999999999999999987654311 012347999999999999888777
Q ss_pred Hhh
Q 008605 366 RSL 368 (560)
Q Consensus 366 ~~l 368 (560)
+++
T Consensus 82 ~~~ 84 (289)
T smart00488 82 RKL 84 (289)
T ss_pred Hhc
Confidence 665
No 120
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.95 E-value=1.1e-08 Score=105.50 Aligned_cols=73 Identities=27% Similarity=0.279 Sum_probs=57.3
Q ss_pred CChHHHHHH----HHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHH
Q 008605 290 RPSQIQAMA----FPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (560)
Q Consensus 290 ~pt~iQ~~a----ip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l 365 (560)
.|+|.|.+. +..+..|.++++.||||+|||++|++|++..+..... .....+++|+++|..+..|....+
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~------~~~~~kvi~~t~T~~~~~q~i~~l 81 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPE------RIQKIKLIYLSRTVSEIEKRLEEL 81 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcc------cccccceeEEeccHHHHHHHHHHH
Confidence 369999994 4456678999999999999999999999987654311 012347999999999999888777
Q ss_pred Hhh
Q 008605 366 RSL 368 (560)
Q Consensus 366 ~~l 368 (560)
+++
T Consensus 82 ~~~ 84 (289)
T smart00489 82 RKL 84 (289)
T ss_pred Hhc
Confidence 665
No 121
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.92 E-value=6.1e-09 Score=95.09 Aligned_cols=134 Identities=23% Similarity=0.283 Sum_probs=81.3
Q ss_pred CCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCc
Q 008605 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~ 384 (560)
|+-.++-..+|+|||--.+.-++...... +.++|||.|||.++..+.+.++.. ++++..-.-+
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~~-----------~~rvLvL~PTRvva~em~~aL~~~-----~~~~~t~~~~- 66 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIKR-----------RLRVLVLAPTRVVAEEMYEALKGL-----PVRFHTNARM- 66 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHHT-----------T--EEEEESSHHHHHHHHHHTTTS-----SEEEESTTSS-
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHHc-----------cCeEEEecccHHHHHHHHHHHhcC-----CcccCceeee-
Confidence 44467889999999987666666655443 557999999999999999888654 2333211110
Q ss_pred chHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCCC---hHHHHHHHHhhCCCCCcEEEEecc
Q 008605 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDED---FEVALQSLISSSPVTAQYLFVTAT 461 (560)
Q Consensus 385 ~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~---f~~~l~~Il~~~~~~~Q~IllSAT 461 (560)
. ....+.-|-|+|...+.+.+.+ ...+.+.+++|+||||.. |.. +.-.+..+-. ...+.+|++|||
T Consensus 67 --~----~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~--Dp~sIA~rg~l~~~~~--~g~~~~i~mTAT 135 (148)
T PF07652_consen 67 --R----THFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFT--DPTSIAARGYLRELAE--SGEAKVIFMTAT 135 (148)
T ss_dssp ----------SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT----SHHHHHHHHHHHHHHH--TTS-EEEEEESS
T ss_pred --c----cccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccC--CHHHHhhheeHHHhhh--ccCeeEEEEeCC
Confidence 0 1123467889999998877766 455789999999999986 322 2222222211 124679999999
Q ss_pred CCHHH
Q 008605 462 LPVEI 466 (560)
Q Consensus 462 lp~~v 466 (560)
.|-..
T Consensus 136 PPG~~ 140 (148)
T PF07652_consen 136 PPGSE 140 (148)
T ss_dssp -TT--
T ss_pred CCCCC
Confidence 98653
No 122
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.89 E-value=2.1e-08 Score=118.38 Aligned_cols=83 Identities=24% Similarity=0.397 Sum_probs=61.2
Q ss_pred CCCCChHHHHHHHHHH----HcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHH
Q 008605 287 NFLRPSQIQAMAFPPV----VEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVL 362 (560)
Q Consensus 287 g~~~pt~iQ~~aip~i----l~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~ 362 (560)
|| .+++-|.+.+..+ ..++.+++.||||+|||++|++|++..... .+.++||-++|+.|-+|+.
T Consensus 255 ~~-e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~-----------~~~~vvIsT~T~~LQ~Ql~ 322 (928)
T PRK08074 255 KY-EKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKK-----------KEEPVVISTYTIQLQQQLL 322 (928)
T ss_pred CC-cCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhc-----------cCCeEEEEcCCHHHHHHHH
Confidence 44 7899999865543 467889999999999999999999876543 2457999999999999986
Q ss_pred HH----HHhhhcCCCCceEEEEeCC
Q 008605 363 SN----CRSLSKCGVPFRSMVVTGG 383 (560)
Q Consensus 363 ~~----l~~l~~~~~~i~v~~l~gg 383 (560)
.. ++++. +.++++.++-|.
T Consensus 323 ~kDiP~L~~~~--~~~~~~~~lKGr 345 (928)
T PRK08074 323 EKDIPLLQKIF--PFPVEAALLKGR 345 (928)
T ss_pred HhhHHHHHHHc--CCCceEEEEEcc
Confidence 62 34433 234555555544
No 123
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=6.8e-08 Score=107.07 Aligned_cols=227 Identities=17% Similarity=0.157 Sum_probs=126.4
Q ss_pred HHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHH-HhhhcCCCCc
Q 008605 297 MAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC-RSLSKCGVPF 375 (560)
Q Consensus 297 ~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l-~~l~~~~~~i 375 (560)
+++.+|..+--+|||+.||||||.- +| +++.+..... ........+=|.-|.|--|..+..+. .+++.++..+
T Consensus 263 ~IMEaIn~n~vvIIcGeTGsGKTTQ--vP--QFLYEAGf~s--~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eV 336 (1172)
T KOG0926|consen 263 RIMEAINENPVVIICGETGSGKTTQ--VP--QFLYEAGFAS--EQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEV 336 (1172)
T ss_pred HHHHHhhcCCeEEEecCCCCCcccc--ch--HHHHHcccCC--ccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccce
Confidence 4455555555689999999999975 23 3444432211 11122334556678887666665544 3444433334
Q ss_pred eEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCCChHHHH----HHHHhh---
Q 008605 376 RSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVAL----QSLISS--- 448 (560)
Q Consensus 376 ~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~l----~~Il~~--- 448 (560)
...+-+.+... ....|.++|-|.|+.-+.+. +.|...+.|||||||.-. -+.+.+ .+|+..
T Consensus 337 sYqIRfd~ti~--------e~T~IkFMTDGVLLrEi~~D-flL~kYSvIIlDEAHERS---vnTDILiGmLSRiV~LR~k 404 (1172)
T KOG0926|consen 337 SYQIRFDGTIG--------EDTSIKFMTDGVLLREIEND-FLLTKYSVIILDEAHERS---VNTDILIGMLSRIVPLRQK 404 (1172)
T ss_pred eEEEEeccccC--------CCceeEEecchHHHHHHHHh-HhhhhceeEEechhhhcc---chHHHHHHHHHHHHHHHHH
Confidence 44444444322 23689999999999887764 458889999999999643 122222 222221
Q ss_pred CC------CCCcEEEEeccCCHHHHHHHHHhCCC-CeEEeCCCccccCCCceeEEEEcCCCCCCCCChhhhhhhHHHHHH
Q 008605 449 SP------VTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALL 521 (560)
Q Consensus 449 ~~------~~~Q~IllSATlp~~v~~~l~~~~~~-~~~i~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~K~~~L~ 521 (560)
.. ....+|+||||+--.....-...|+. +.++..+... -+..| |+--.. .++ -..+-+....
T Consensus 405 ~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQ-fPVsI-HF~krT-~~D--------Yi~eAfrKtc 473 (1172)
T KOG0926|consen 405 YYKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQ-FPVSI-HFNKRT-PDD--------YIAEAFRKTC 473 (1172)
T ss_pred HhhhhcccCceeEEEEeeeEEecccccCceecCCCCceeeeeccc-CceEE-EeccCC-Cch--------HHHHHHHHHH
Confidence 11 14569999999853321111223332 1222222111 11111 111111 110 0112233344
Q ss_pred HHHHhCCCCcEEEEeCchHHHHHHHHHHHhh
Q 008605 522 QLIEKSPVSKTIVFCNKVCFSYKCNNLFGFF 552 (560)
Q Consensus 522 ~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l 552 (560)
.|-+..+.+-+|||+....++..+++.|++-
T Consensus 474 ~IH~kLP~G~ILVFvTGQqEV~qL~~kLRK~ 504 (1172)
T KOG0926|consen 474 KIHKKLPPGGILVFVTGQQEVDQLCEKLRKR 504 (1172)
T ss_pred HHhhcCCCCcEEEEEeChHHHHHHHHHHHhh
Confidence 4545668889999999999999999999874
No 124
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.81 E-value=2.8e-07 Score=97.64 Aligned_cols=250 Identities=16% Similarity=0.094 Sum_probs=141.2
Q ss_pred cccccccCCCHHHHHHHHHCCCCCChHHHHHH-HHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCC
Q 008605 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMA-FPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGS 345 (560)
Q Consensus 267 ~~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~a-ip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~ 345 (560)
...|...++++...+.|++- -.-|---|++- +..+.+.+-+++++.||||||.-.--+.+...... .
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R-~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~-----------~ 91 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKR-RELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH-----------L 91 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHH-hcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhh-----------c
Confidence 35688888888888888663 23344444444 45566677788999999999987544454444332 1
Q ss_pred CEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEE
Q 008605 346 PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAI 425 (560)
Q Consensus 346 ~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LV 425 (560)
..+.-.-|.|--|.++..+...-. ++..+.-.|-.-..+... ....-+-.+|-+.|++-.-.. -.+...++||
T Consensus 92 ~~v~CTQprrvaamsva~RVadEM----Dv~lG~EVGysIrfEdC~--~~~T~Lky~tDgmLlrEams~-p~l~~y~vii 164 (699)
T KOG0925|consen 92 TGVACTQPRRVAAMSVAQRVADEM----DVTLGEEVGYSIRFEDCT--SPNTLLKYCTDGMLLREAMSD-PLLGRYGVII 164 (699)
T ss_pred cceeecCchHHHHHHHHHHHHHHh----ccccchhccccccccccC--ChhHHHHHhcchHHHHHHhhC-cccccccEEE
Confidence 224455588877777665553321 111111111100000000 000001134444444322221 2477889999
Q ss_pred EccccccC-CCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCCC
Q 008605 426 LDEVDILF-NDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504 (560)
Q Consensus 426 iDEah~ll-~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~ 504 (560)
+||||.-. ....+.-.++.++..- ++..+|++|||+... .+..+|.++.++..++.+. ++.+|..-...+
T Consensus 165 LDeahERtlATDiLmGllk~v~~~r-pdLk~vvmSatl~a~---Kfq~yf~n~Pll~vpg~~P----vEi~Yt~e~erD- 235 (699)
T KOG0925|consen 165 LDEAHERTLATDILMGLLKEVVRNR-PDLKLVVMSATLDAE---KFQRYFGNAPLLAVPGTHP----VEIFYTPEPERD- 235 (699)
T ss_pred echhhhhhHHHHHHHHHHHHHHhhC-CCceEEEeecccchH---HHHHHhCCCCeeecCCCCc----eEEEecCCCChh-
Confidence 99999532 1112333445555544 488999999999754 5788999988887765222 333332221111
Q ss_pred CCCChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHh
Q 008605 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGF 551 (560)
Q Consensus 505 ~~~~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~ 551 (560)
.+...+..+.++-.....+.+|||....++.+..++.+.+
T Consensus 236 -------ylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~r 275 (699)
T KOG0925|consen 236 -------YLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISR 275 (699)
T ss_pred -------HHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHH
Confidence 1112233444444445578899999999999998888873
No 125
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.79 E-value=4.5e-08 Score=100.00 Aligned_cols=145 Identities=21% Similarity=0.223 Sum_probs=83.4
Q ss_pred CCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCc
Q 008605 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~ 384 (560)
.+.+|++-.+|+|||+..+..+. .+.... .....-.+|||+|. .+..|...++.++... ..+++..+.|..
T Consensus 25 ~~g~lL~de~GlGKT~~~i~~~~-~l~~~~------~~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~-~~~~v~~~~~~~ 95 (299)
T PF00176_consen 25 PRGGLLADEMGLGKTITAIALIS-YLKNEF------PQRGEKKTLIVVPS-SLLSQWKEEIEKWFDP-DSLRVIIYDGDS 95 (299)
T ss_dssp T-EEEE---TTSSHHHHHHHHHH-HHHHCC------TTSS-S-EEEEE-T-TTHHHHHHHHHHHSGT--TS-EEEESSSC
T ss_pred CCCEEEEECCCCCchhhhhhhhh-hhhhcc------ccccccceeEeecc-chhhhhhhhhcccccc-cccccccccccc
Confidence 35689999999999987654443 333221 00111249999999 8889999999988752 256777777665
Q ss_pred chHHHHHHhcCCCcEEEECHHHHHHHHHh---ccccCCCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEecc
Q 008605 385 RQKTQLENLQEGVDVLIATPGRFMFLIKE---GILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTAT 461 (560)
Q Consensus 385 ~~~~~~~~l~~~~~IlV~TP~~L~~ll~~---~~~~l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSAT 461 (560)
.............+|+|+|.+.+...... ..+.-...++||+||+|.+- + ........+.. +. ....+++|||
T Consensus 96 ~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k-~-~~s~~~~~l~~-l~-~~~~~lLSgT 171 (299)
T PF00176_consen 96 ERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLK-N-KDSKRYKALRK-LR-ARYRWLLSGT 171 (299)
T ss_dssp HHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGT-T-TTSHHHHHHHC-CC-ECEEEEE-SS
T ss_pred ccccccccccccceeeeccccccccccccccccccccccceeEEEecccccc-c-ccccccccccc-cc-cceEEeeccc
Confidence 22222222234589999999999811000 11111347899999999995 2 22223333333 44 5667889999
Q ss_pred C
Q 008605 462 L 462 (560)
Q Consensus 462 l 462 (560)
+
T Consensus 172 P 172 (299)
T PF00176_consen 172 P 172 (299)
T ss_dssp -
T ss_pred c
Confidence 6
No 126
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=98.68 E-value=4.6e-07 Score=106.68 Aligned_cols=154 Identities=19% Similarity=0.233 Sum_probs=102.5
Q ss_pred CChHHHHHHHHHHH----cCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHH
Q 008605 290 RPSQIQAMAFPPVV----EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (560)
Q Consensus 290 ~pt~iQ~~aip~il----~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l 365 (560)
.+.++|.+++..++ .|.+.|++-..|.|||+..+ .++..+.... .....+|||||. .+..+..+.+
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaI-alL~~L~~~~--------~~~gp~LIVvP~-SlL~nW~~Ei 238 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTI-SLLGYLHEYR--------GITGPHMVVAPK-STLGNWMNEI 238 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHH-HHHHHHHHhc--------CCCCCEEEEeCh-HHHHHHHHHH
Confidence 67899999998765 57889999999999998754 3344443211 122358999996 5678888888
Q ss_pred HhhhcCCCCceEEEEeCCcchHHHHHH---hcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCCChHHHH
Q 008605 366 RSLSKCGVPFRSMVVTGGFRQKTQLEN---LQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVAL 442 (560)
Q Consensus 366 ~~l~~~~~~i~v~~l~gg~~~~~~~~~---l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~l 442 (560)
.+++ ..+++..++|.......... .....+|+|+|++.+..... .+.--..++|||||||++-+ ....+
T Consensus 239 ~kw~---p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~--~L~k~~W~~VIvDEAHrIKN---~~Skl 310 (1033)
T PLN03142 239 RRFC---PVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT--ALKRFSWRYIIIDEAHRIKN---ENSLL 310 (1033)
T ss_pred HHHC---CCCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH--HhccCCCCEEEEcCccccCC---HHHHH
Confidence 8875 45777778876543322211 12357999999998865322 12222467999999999973 22333
Q ss_pred HHHHhhCCCCCcEEEEeccC
Q 008605 443 QSLISSSPVTAQYLFVTATL 462 (560)
Q Consensus 443 ~~Il~~~~~~~Q~IllSATl 462 (560)
..++..+. ....+++|+|+
T Consensus 311 skalr~L~-a~~RLLLTGTP 329 (1033)
T PLN03142 311 SKTMRLFS-TNYRLLITGTP 329 (1033)
T ss_pred HHHHHHhh-cCcEEEEecCC
Confidence 44444444 33458899997
No 127
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.66 E-value=4e-07 Score=97.32 Aligned_cols=263 Identities=15% Similarity=0.139 Sum_probs=150.7
Q ss_pred CCCCChHHHHHHHHHHHcCCcEEEEcCC-CCcc--hhhcHHHHHHHHHHHHhhcc-------------------CCCCCC
Q 008605 287 NFLRPSQIQAMAFPPVVEGKSCILADQS-GSGK--TLAYLLPVIQRLRQEELQGL-------------------SKSTSG 344 (560)
Q Consensus 287 g~~~pt~iQ~~aip~il~g~dvlv~apT-GSGK--Tla~llpil~~l~~~~~~~~-------------------~~~~~~ 344 (560)
.-..+|+.|.+.+....+.+|++..-.| +.|+ +-.|++.+++++.+.+..-+ ......
T Consensus 213 ~s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~t 292 (698)
T KOG2340|consen 213 KSEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFT 292 (698)
T ss_pred ccCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCC
Confidence 4456899999999999999998853322 3444 56789999998876332111 122346
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHhhhcCCCCce--E------EEEeCCc--------chHHHHHHh---------------
Q 008605 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFR--S------MVVTGGF--------RQKTQLENL--------------- 393 (560)
Q Consensus 345 ~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~--v------~~l~gg~--------~~~~~~~~l--------------- 393 (560)
.|++|||||+|+-|..+.+.+..+......-+ | .--++|. ...+..+.+
T Consensus 293 RpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~f 372 (698)
T KOG2340|consen 293 RPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAF 372 (698)
T ss_pred CceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHH
Confidence 89999999999999999999887732111100 0 0111110 000111111
Q ss_pred ----------cCCCcEEEECHHHHHHHHHh------ccccCCCccEEEEccccccCCCCChHHHHHHHHhhCC---C---
Q 008605 394 ----------QEGVDVLIATPGRFMFLIKE------GILQLINLRCAILDEVDILFNDEDFEVALQSLISSSP---V--- 451 (560)
Q Consensus 394 ----------~~~~~IlV~TP~~L~~ll~~------~~~~l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~---~--- 451 (560)
....|||||+|--|..++.+ ....|+.+.++|||.||.|+ ...|.. +..|+..+. .
T Consensus 373 tkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l-~QNwEh-l~~ifdHLn~~P~k~h 450 (698)
T KOG2340|consen 373 TKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIML-MQNWEH-LLHIFDHLNLQPSKQH 450 (698)
T ss_pred HHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHH-HhhHHH-HHHHHHHhhcCccccc
Confidence 12479999999998888863 12347789999999999998 444444 455555442 1
Q ss_pred ------------------CCcEEEEeccCCHHHHHHHHHhCCCC--eEEeCCC-----ccccCCCceeEEEEcCCCCCCC
Q 008605 452 ------------------TAQYLFVTATLPVEIYNKLVEVFPDC--KVVMGPG-----MHRISPGLEEFLVDCSGDQESD 506 (560)
Q Consensus 452 ------------------~~Q~IllSATlp~~v~~~l~~~~~~~--~~i~~~~-----~~~~~~~i~~~~v~~~~~~~~~ 506 (560)
-+|+++||+-..+....++..+..+. .+...+- ....-..+.|.+..+.... ..
T Consensus 451 ~~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~s-i~ 529 (698)
T KOG2340|consen 451 DVDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKS-II 529 (698)
T ss_pred CCChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccC-cc
Confidence 25999999988877766665554331 1111110 1111112223222222111 11
Q ss_pred CChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhh
Q 008605 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFF 552 (560)
Q Consensus 507 ~~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l 552 (560)
..+...|..-...++--+......-+|||.+|--+--.+..+++.-
T Consensus 530 ~~~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e 575 (698)
T KOG2340|consen 530 ETPDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKE 575 (698)
T ss_pred cCchHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhh
Confidence 1122222222222222222333456899999988888888877653
No 128
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.66 E-value=1.2e-06 Score=100.04 Aligned_cols=130 Identities=18% Similarity=0.207 Sum_probs=97.8
Q ss_pred CCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHH
Q 008605 286 QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (560)
Q Consensus 286 ~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l 365 (560)
.|. .|+++|..+.=++ .+.-|+.+.||.|||+++.+|+.-..+. |..+.||+++..||.+-++.+
T Consensus 73 lG~-r~ydvQlig~l~L--~~G~IaEm~TGEGKTL~a~l~ayl~aL~------------G~~VhVvT~NdyLA~RD~e~m 137 (870)
T CHL00122 73 LGL-RHFDVQLIGGLVL--NDGKIAEMKTGEGKTLVATLPAYLNALT------------GKGVHIVTVNDYLAKRDQEWM 137 (870)
T ss_pred hCC-CCCchHhhhhHhh--cCCccccccCCCCchHHHHHHHHHHHhc------------CCceEEEeCCHHHHHHHHHHH
Confidence 355 5888888765333 4568899999999999999998644332 445899999999999999999
Q ss_pred HhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHH-HHHHhcc------ccCCCccEEEEccccccC
Q 008605 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFM-FLIKEGI------LQLINLRCAILDEVDILF 433 (560)
Q Consensus 366 ~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~-~ll~~~~------~~l~~l~~LViDEah~ll 433 (560)
..+..+ .++.|.++.++.+..+..... .|+|+.+|..-+- ++|+.+. .....+.+.||||+|.++
T Consensus 138 ~pvy~~-LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 138 GQIYRF-LGLTVGLIQEGMSSEERKKNY--LKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred HHHHHH-cCCceeeeCCCCChHHHHHhc--CCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 988875 689999988887765544443 4899999987654 4444322 124568899999999765
No 129
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.63 E-value=2.3e-08 Score=113.72 Aligned_cols=238 Identities=18% Similarity=0.247 Sum_probs=150.9
Q ss_pred CChHHHHHHHHHHH-cCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhh
Q 008605 290 RPSQIQAMAFPPVV-EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (560)
Q Consensus 290 ~pt~iQ~~aip~il-~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l 368 (560)
.+.|+|.+.+-.+. ...++++-+|||+|||++|.+.++..+.. ..+.+++|++|.++|+....+.+.+.
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~----------~p~~kvvyIap~kalvker~~Dw~~r 996 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSY----------YPGSKVVYIAPDKALVKERSDDWSKR 996 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhcc----------CCCccEEEEcCCchhhcccccchhhh
Confidence 56677777765543 34688999999999999999998876643 45678999999999999998888776
Q ss_pred hcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHh--ccccCCCccEEEEccccccCCCCChHHHHHHHH
Q 008605 369 SKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE--GILQLINLRCAILDEVDILFNDEDFEVALQSLI 446 (560)
Q Consensus 369 ~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~--~~~~l~~l~~LViDEah~ll~d~~f~~~l~~Il 446 (560)
... .++++.-+.|+..... ..+ ...+|+|+||+++..+.+. ..-.+.++..+|+||.|++. .++.+.++.+.
T Consensus 997 ~~~-~g~k~ie~tgd~~pd~--~~v-~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg--~~rgPVle~iv 1070 (1230)
T KOG0952|consen 997 DEL-PGIKVIELTGDVTPDV--KAV-READIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLG--EDRGPVLEVIV 1070 (1230)
T ss_pred ccc-CCceeEeccCccCCCh--hhe-ecCceEEcccccccCccccccchhhhccccceeeccccccc--CCCcceEEEEe
Confidence 654 4889999999887652 222 2479999999999888773 34457889999999999997 46666666655
Q ss_pred hhC-------CCCCcEEEEeccCCHHHHHHHHHhCCCCeE-EeCCCccccCCCceeEEEEcCCCCCCCCChhhhhhhHHH
Q 008605 447 SSS-------PVTAQYLFVTATLPVEIYNKLVEVFPDCKV-VMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKS 518 (560)
Q Consensus 447 ~~~-------~~~~Q~IllSATlp~~v~~~l~~~~~~~~~-i~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~K~~ 518 (560)
... +..+|.+++|--+... ..+.+|+.-... -+.+..+..+ ++..+-..+.. ........+..
T Consensus 1071 sr~n~~s~~t~~~vr~~glsta~~na--~dla~wl~~~~~~nf~~svrpvp--~~~~i~gfp~~-----~~cprm~smnk 1141 (1230)
T KOG0952|consen 1071 SRMNYISSQTEEPVRYLGLSTALANA--NDLADWLNIKDMYNFRPSVRPVP--LEVHIDGFPGQ-----HYCPRMMSMNK 1141 (1230)
T ss_pred eccccCccccCcchhhhhHhhhhhcc--HHHHHHhCCCCcCCCCcccccCC--ceEeecCCCch-----hcchhhhhccc
Confidence 433 3456667665544211 234555532211 1111111111 11111111110 00000011222
Q ss_pred HHHHHHH-hCCCCcEEEEeCchHHHHHHHHHHHhh
Q 008605 519 ALLQLIE-KSPVSKTIVFCNKVCFSYKCNNLFGFF 552 (560)
Q Consensus 519 ~L~~lL~-~~~~~ktIIFcnS~~~a~~la~~Lk~l 552 (560)
...+.++ ..+..++|||+.++......+..|-.+
T Consensus 1142 pa~qaik~~sp~~p~lifv~srrqtrlta~~li~~ 1176 (1230)
T KOG0952|consen 1142 PAFQAIKTHSPIKPVLIFVSSRRQTRLTALDLIAS 1176 (1230)
T ss_pred HHHHHHhcCCCCCceEEEeecccccccchHhHHhh
Confidence 3334444 457889999999988777666665443
No 130
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.63 E-value=1.2e-07 Score=108.67 Aligned_cols=128 Identities=20% Similarity=0.197 Sum_probs=98.7
Q ss_pred CCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhh
Q 008605 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (560)
Q Consensus 289 ~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l 368 (560)
-.|+++|...--++ ..--|+.+.||+|||+++.+|++..... |..+.|++|+.-||.|-++.+..+
T Consensus 81 m~~ydVQliGg~~L--h~G~iaEM~TGEGKTLvA~l~a~l~al~------------G~~VhvvT~ndyLA~RD~e~m~~l 146 (913)
T PRK13103 81 MRHFDVQLIGGMTL--HEGKIAEMRTGEGKTLVGTLAVYLNALS------------GKGVHVVTVNDYLARRDANWMRPL 146 (913)
T ss_pred CCcchhHHHhhhHh--ccCccccccCCCCChHHHHHHHHHHHHc------------CCCEEEEeCCHHHHHHHHHHHHHH
Confidence 36788887664344 3456889999999999999999866543 456999999999999999999999
Q ss_pred hcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHH-HHHHhccc------cCCCccEEEEccccccC
Q 008605 369 SKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFM-FLIKEGIL------QLINLRCAILDEVDILF 433 (560)
Q Consensus 369 ~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~-~ll~~~~~------~l~~l~~LViDEah~ll 433 (560)
..+ .++.+.++.++....+....+. ++|+++|..-+- ++|+.+.. ....+.+.||||+|.++
T Consensus 147 ~~~-lGl~v~~i~~~~~~~err~~Y~--~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiL 215 (913)
T PRK13103 147 YEF-LGLSVGIVTPFQPPEEKRAAYA--ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSIL 215 (913)
T ss_pred hcc-cCCEEEEECCCCCHHHHHHHhc--CCEEEEcccccccchhhccceechhhhcccccceeEechhhhee
Confidence 875 6899999988877665544443 899999988762 44443211 23678999999999876
No 131
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.63 E-value=1.5e-06 Score=95.17 Aligned_cols=222 Identities=14% Similarity=0.134 Sum_probs=126.5
Q ss_pred hHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhhcC
Q 008605 292 SQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKC 371 (560)
Q Consensus 292 t~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~~ 371 (560)
...+.+.+..+...+-++|++.||||||.- +-+.+.+... .....+-+.-|.|.-|..++..+..-...
T Consensus 358 f~~R~~ll~~ir~n~vvvivgETGSGKTTQ----l~QyL~edGY-------~~~GmIGcTQPRRvAAiSVAkrVa~EM~~ 426 (1042)
T KOG0924|consen 358 FACRDQLLSVIRENQVVVIVGETGSGKTTQ----LAQYLYEDGY-------ADNGMIGCTQPRRVAAISVAKRVAEEMGV 426 (1042)
T ss_pred HHHHHHHHHHHhhCcEEEEEecCCCCchhh----hHHHHHhccc-------ccCCeeeecCchHHHHHHHHHHHHHHhCC
Confidence 445566666666677789999999999975 3344554422 11223444559998888887766443221
Q ss_pred CCCceEEEE--eCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCCC-hHHHHHHHHhh
Q 008605 372 GVPFRSMVV--TGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDED-FEVALQSLISS 448 (560)
Q Consensus 372 ~~~i~v~~l--~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~-f~~~l~~Il~~ 448 (560)
..+-.|++. +.+.+. ....|-..|-|.|+.-.... -.|...++||+||||.-.-+.. ..-.++.++..
T Consensus 427 ~lG~~VGYsIRFEdvT~--------~~T~IkymTDGiLLrEsL~d-~~L~kYSviImDEAHERslNtDilfGllk~~lar 497 (1042)
T KOG0924|consen 427 TLGDTVGYSIRFEDVTS--------EDTKIKYMTDGILLRESLKD-RDLDKYSVIIMDEAHERSLNTDILFGLLKKVLAR 497 (1042)
T ss_pred ccccccceEEEeeecCC--------CceeEEEeccchHHHHHhhh-hhhhheeEEEechhhhcccchHHHHHHHHHHHHh
Confidence 112222221 111111 12468899999988543332 2477889999999996541222 11222333332
Q ss_pred CCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCCCCCCChhhhhhhHHHHHHHHHHh--
Q 008605 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEK-- 526 (560)
Q Consensus 449 ~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~K~~~L~~lL~~-- 526 (560)
..+..+|++||||..+ .+..+|+++..+..++.... +...+...+-++ .--.++.+.+.-
T Consensus 498 -RrdlKliVtSATm~a~---kf~nfFgn~p~f~IpGRTyP---V~~~~~k~p~eD-----------YVeaavkq~v~Ihl 559 (1042)
T KOG0924|consen 498 -RRDLKLIVTSATMDAQ---KFSNFFGNCPQFTIPGRTYP---VEIMYTKTPVED-----------YVEAAVKQAVQIHL 559 (1042)
T ss_pred -hccceEEEeeccccHH---HHHHHhCCCceeeecCCccc---eEEEeccCchHH-----------HHHHHHhhheEeec
Confidence 3477899999999864 57889987766665543222 222222222211 112333333322
Q ss_pred -CCCCcEEEEeCchHHHHHHHHHHHh
Q 008605 527 -SPVSKTIVFCNKVCFSYKCNNLFGF 551 (560)
Q Consensus 527 -~~~~ktIIFcnS~~~a~~la~~Lk~ 551 (560)
.+.+.+|||....+..+.++..++.
T Consensus 560 ~~~~GdilIfmtGqediE~t~~~i~~ 585 (1042)
T KOG0924|consen 560 SGPPGDILIFMTGQEDIECTCDIIKE 585 (1042)
T ss_pred cCCCCCEEEecCCCcchhHHHHHHHH
Confidence 2457899999988776666655543
No 132
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.60 E-value=1e-06 Score=96.31 Aligned_cols=224 Identities=17% Similarity=0.155 Sum_probs=136.4
Q ss_pred hHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHH-hhhc
Q 008605 292 SQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR-SLSK 370 (560)
Q Consensus 292 t~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~-~l~~ 370 (560)
+++-.+.+.++...+-+||.+.||||||.- +| +.+.+... ...+.++-+.-|.|--|..++.++. +++.
T Consensus 267 y~ykdell~av~e~QVLiI~GeTGSGKTTQ--iP--QyL~EaGy------tk~gk~IgcTQPRRVAAmSVAaRVA~EMgv 336 (902)
T KOG0923|consen 267 YPYKDELLKAVKEHQVLIIVGETGSGKTTQ--IP--QYLYEAGY------TKGGKKIGCTQPRRVAAMSVAARVAEEMGV 336 (902)
T ss_pred hhhHHHHHHHHHhCcEEEEEcCCCCCcccc--cc--HHHHhccc------ccCCceEeecCcchHHHHHHHHHHHHHhCc
Confidence 444556677777778899999999999975 33 34444322 2234445566799888877766553 3321
Q ss_pred CCCCceEEE--EeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCC-ChHHHHHHHHh
Q 008605 371 CGVPFRSMV--VTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDE-DFEVALQSLIS 447 (560)
Q Consensus 371 ~~~~i~v~~--l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~-~f~~~l~~Il~ 447 (560)
..+-.|+. -+-+... ...-|-++|-|.|+.-+... ..|...+++||||||.---.. -+-..+..|.+
T Consensus 337 -kLG~eVGYsIRFEdcTS--------ekTvlKYMTDGmLlREfL~e-pdLasYSViiiDEAHERTL~TDILfgLvKDIar 406 (902)
T KOG0923|consen 337 -KLGHEVGYSIRFEDCTS--------EKTVLKYMTDGMLLREFLSE-PDLASYSVIIVDEAHERTLHTDILFGLVKDIAR 406 (902)
T ss_pred -ccccccceEEEeccccC--------cceeeeeecchhHHHHHhcc-ccccceeEEEeehhhhhhhhhhHHHHHHHHHHh
Confidence 11111111 1111111 11357789999998665543 368889999999999632111 12222333333
Q ss_pred hCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCCCCCCChhhhhhhHHHHHHHHH---
Q 008605 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLI--- 524 (560)
Q Consensus 448 ~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~K~~~L~~lL--- 524 (560)
+.++..+++.|||+..+ .+..+|.+..++..++.... +.-+|-..+.. . ..-.++..++
T Consensus 407 -~RpdLKllIsSAT~DAe---kFS~fFDdapIF~iPGRRyP---Vdi~Yt~~PEA---------d--YldAai~tVlqIH 468 (902)
T KOG0923|consen 407 -FRPDLKLLISSATMDAE---KFSAFFDDAPIFRIPGRRYP---VDIFYTKAPEA---------D--YLDAAIVTVLQIH 468 (902)
T ss_pred -hCCcceEEeeccccCHH---HHHHhccCCcEEeccCcccc---eeeecccCCch---------h--HHHHHHhhheeeE
Confidence 34688999999999864 57889999888877764332 33333333221 1 1112233333
Q ss_pred HhCCCCcEEEEeCchHHHHHHHHHHHhhc
Q 008605 525 EKSPVSKTIVFCNKVCFSYKCNNLFGFFS 553 (560)
Q Consensus 525 ~~~~~~ktIIFcnS~~~a~~la~~Lk~l~ 553 (560)
...+.+-+|||..-.++.+.+.+.|+.++
T Consensus 469 ~tqp~GDILVFltGQeEIEt~~e~l~~~~ 497 (902)
T KOG0923|consen 469 LTQPLGDILVFLTGQEEIETVKENLKERC 497 (902)
T ss_pred eccCCccEEEEeccHHHHHHHHHHHHHHH
Confidence 23467899999999999999888887764
No 133
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.59 E-value=3.5e-06 Score=90.75 Aligned_cols=208 Identities=16% Similarity=0.178 Sum_probs=130.9
Q ss_pred CCCCCCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCce----EEEEeC--------------CcchHHHHHHhc-------
Q 008605 340 KSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFR----SMVVTG--------------GFRQKTQLENLQ------- 394 (560)
Q Consensus 340 ~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~----v~~l~g--------------g~~~~~~~~~l~------- 394 (560)
...-..|++|||+|+|..|.++.+.+.++......+. -..-+| .......++.+.
T Consensus 32 DQGftRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~ 111 (442)
T PF06862_consen 32 DQGFTRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDC 111 (442)
T ss_pred ccCCCCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccce
Confidence 3456789999999999999999988877753210000 000011 011112222221
Q ss_pred ------------------CCCcEEEECHHHHHHHHHh------ccccCCCccEEEEccccccCCCCChHHHHHHHHhhCC
Q 008605 395 ------------------EGVDVLIATPGRFMFLIKE------GILQLINLRCAILDEVDILFNDEDFEVALQSLISSSP 450 (560)
Q Consensus 395 ------------------~~~~IlV~TP~~L~~ll~~------~~~~l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~ 450 (560)
..+|||||+|=-|...+.. ....|+.+.++|||.||.|+ ++-...+..+++.+.
T Consensus 112 FrlGik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~--MQNW~Hv~~v~~~lN 189 (442)
T PF06862_consen 112 FRLGIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLL--MQNWEHVLHVFEHLN 189 (442)
T ss_pred EEEeEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHH--HhhHHHHHHHHHHhc
Confidence 1379999999999888864 33468899999999999998 454455566665543
Q ss_pred ------------------------CCCcEEEEeccCCHHHHHHHHHhCCCC---eEEeCCC-----ccccCCCceeEEEE
Q 008605 451 ------------------------VTAQYLFVTATLPVEIYNKLVEVFPDC---KVVMGPG-----MHRISPGLEEFLVD 498 (560)
Q Consensus 451 ------------------------~~~Q~IllSATlp~~v~~~l~~~~~~~---~~i~~~~-----~~~~~~~i~~~~v~ 498 (560)
.-+|+|++|+...+++..++.....+. ..+.... .......+.|.+..
T Consensus 190 ~~P~~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r 269 (442)
T PF06862_consen 190 LQPKKSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQR 269 (442)
T ss_pred cCCCCCCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEE
Confidence 136999999999999988877755431 1222111 13455677888877
Q ss_pred cCCCCCCCCChhhhhhhHHHHHHHHHH-hCCCCcEEEEeCchHHHHHHHHHHH
Q 008605 499 CSGDQESDKTPETAFLNKKSALLQLIE-KSPVSKTIVFCNKVCFSYKCNNLFG 550 (560)
Q Consensus 499 ~~~~~~~~~~~~~~~~~K~~~L~~lL~-~~~~~ktIIFcnS~~~a~~la~~Lk 550 (560)
+..... ...+...+..-...+..-+. ....+.+|||++|--+=-.|.++|+
T Consensus 270 ~~~~s~-~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk 321 (442)
T PF06862_consen 270 FDCSSP-ADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLK 321 (442)
T ss_pred ecCCCc-chhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHH
Confidence 654321 12222233332233333333 4556899999999888888888887
No 134
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.57 E-value=1.2e-06 Score=94.25 Aligned_cols=258 Identities=9% Similarity=-0.013 Sum_probs=161.3
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHH
Q 008605 279 MIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELA 358 (560)
Q Consensus 279 ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa 358 (560)
+.+.+..+..+....+|.+++..+..|+++++.-.|.+||.++|.+.....+... +....+++.|+.+++
T Consensus 275 ~~~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~----------~~s~~~~~~~~~~~~ 344 (1034)
T KOG4150|consen 275 IRSLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLC----------HATNSLLPSEMVEHL 344 (1034)
T ss_pred HHHHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcC----------cccceecchhHHHHh
Confidence 3344455666788899999999999999999999999999999999988776543 233578999999998
Q ss_pred HHHHHHHHhhhcCCCC--ceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhcc----ccCCCccEEEEcccccc
Q 008605 359 SQVLSNCRSLSKCGVP--FRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGI----LQLINLRCAILDEVDIL 432 (560)
Q Consensus 359 ~Qi~~~l~~l~~~~~~--i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~----~~l~~l~~LViDEah~l 432 (560)
+...+-+.-....-.. --++-.+.+.+......-++.+.+++.+.|..+...+.-+. ..+-...++++||+|.+
T Consensus 345 ~~~~~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y 424 (1034)
T KOG4150|consen 345 RNGSKGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALY 424 (1034)
T ss_pred hccCCceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeee
Confidence 8754433221110011 12333455555555555556789999999998875543322 23445678999999988
Q ss_pred CCCC--ChHHHHHHHHhhC-----CCCCcEEEEeccCCHHHHHHHHHhCC--CCeEEeCCCccccCCCceeEEEEcCCCC
Q 008605 433 FNDE--DFEVALQSLISSS-----PVTAQYLFVTATLPVEIYNKLVEVFP--DCKVVMGPGMHRISPGLEEFLVDCSGDQ 503 (560)
Q Consensus 433 l~d~--~f~~~l~~Il~~~-----~~~~Q~IllSATlp~~v~~~l~~~~~--~~~~i~~~~~~~~~~~i~~~~v~~~~~~ 503 (560)
+.-. -...+++++++.+ ..+.|++-.|||+...++ ...+.+. ....+..++ .+..-+++++.-++-.
T Consensus 425 ~~~~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~-~~~~~~~~~E~~Li~~DG---SPs~~K~~V~WNP~~~ 500 (1034)
T KOG4150|consen 425 LFPTKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTR-LRSELANLSELELVTIDG---SPSSEKLFVLWNPSAP 500 (1034)
T ss_pred ecchhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHH-HHHHhcCCcceEEEEecC---CCCccceEEEeCCCCC
Confidence 7211 1334555555543 357899999999987664 3444443 334444332 3444566666544421
Q ss_pred CCCC-ChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhh
Q 008605 504 ESDK-TPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFF 552 (560)
Q Consensus 504 ~~~~-~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l 552 (560)
...+ +.+.-..+-...+.+++. .+-++|-||.+++-|+-+....+.+
T Consensus 501 P~~~~~~~~~i~E~s~~~~~~i~--~~~R~IAFC~~R~~CEL~~~~~R~I 548 (1034)
T KOG4150|consen 501 PTSKSEKSSKVVEVSHLFAEMVQ--HGLRCIAFCPSRKLCELVLCLTREI 548 (1034)
T ss_pred CcchhhhhhHHHHHHHHHHHHHH--cCCcEEEeccHHHHHHHHHHHHHHH
Confidence 1111 111111122233344443 3368999999999999877666553
No 135
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.55 E-value=1.1e-06 Score=88.97 Aligned_cols=130 Identities=22% Similarity=0.336 Sum_probs=96.3
Q ss_pred CCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhh
Q 008605 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (560)
Q Consensus 289 ~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l 368 (560)
..|++.|..++=++..|+ |+...||-|||++..+|+....+. |..+-|++.+..||.+=++.+..+
T Consensus 76 ~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~------------G~~V~vvT~NdyLA~RD~~~~~~~ 141 (266)
T PF07517_consen 76 LRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ------------GKGVHVVTSNDYLAKRDAEEMRPF 141 (266)
T ss_dssp ----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT------------SS-EEEEESSHHHHHHHHHHHHHH
T ss_pred CcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh------------cCCcEEEeccHHHhhccHHHHHHH
Confidence 379999999987776666 999999999999998888766543 456889999999999999999988
Q ss_pred hcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHH-HHHHhcc------ccCCCccEEEEccccccCCC
Q 008605 369 SKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFM-FLIKEGI------LQLINLRCAILDEVDILFND 435 (560)
Q Consensus 369 ~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~-~ll~~~~------~~l~~l~~LViDEah~ll~d 435 (560)
..+ .++.+.+..++.......... .++|+.+|...+. +.|+.+. .....+.++||||||.++-|
T Consensus 142 y~~-LGlsv~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~LiD 212 (266)
T PF07517_consen 142 YEF-LGLSVGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSILID 212 (266)
T ss_dssp HHH-TT--EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHTTT
T ss_pred HHH-hhhccccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEEEe
Confidence 875 789999999888765443333 3789999999886 4554421 12467889999999988733
No 136
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.55 E-value=1.1e-06 Score=99.80 Aligned_cols=135 Identities=11% Similarity=0.086 Sum_probs=92.2
Q ss_pred CCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHH---H
Q 008605 314 SGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ---L 390 (560)
Q Consensus 314 TGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~---~ 390 (560)
+|||||.+|+-.+-..+.. +..+|||+|...|+.|+...++..+. .-.+..++++.+..+. +
T Consensus 169 ~GSGKTevyl~~i~~~l~~------------Gk~vLvLvPEi~lt~q~~~rl~~~f~---~~~v~~lhS~l~~~~R~~~w 233 (665)
T PRK14873 169 PGEDWARRLAAAAAATLRA------------GRGALVVVPDQRDVDRLEAALRALLG---AGDVAVLSAGLGPADRYRRW 233 (665)
T ss_pred CCCcHHHHHHHHHHHHHHc------------CCeEEEEecchhhHHHHHHHHHHHcC---CCcEEEECCCCCHHHHHHHH
Confidence 5999999998666555532 55799999999999999999998753 2457778877765443 3
Q ss_pred HHhcCC-CcEEEECHHHHHHHHHhccccCCCccEEEEccccccC--CCCChHHHHHH--HHhhCCCCCcEEEEeccCCHH
Q 008605 391 ENLQEG-VDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILF--NDEDFEVALQS--LISSSPVTAQYLFVTATLPVE 465 (560)
Q Consensus 391 ~~l~~~-~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll--~d~~f~~~l~~--Il~~~~~~~Q~IllSATlp~~ 465 (560)
..+..| +.|+|+|-..+ ...+.++.+|||||-|.-. .+.......+. +.+....+..+|+-|||.+-+
T Consensus 234 ~~~~~G~~~IViGtRSAv-------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSle 306 (665)
T PRK14873 234 LAVLRGQARVVVGTRSAV-------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAE 306 (665)
T ss_pred HHHhCCCCcEEEEcceeE-------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHH
Confidence 344444 89999995443 4578899999999998432 11111111121 222233578899999999877
Q ss_pred HHHHH
Q 008605 466 IYNKL 470 (560)
Q Consensus 466 v~~~l 470 (560)
....+
T Consensus 307 s~~~~ 311 (665)
T PRK14873 307 AQALV 311 (665)
T ss_pred HHHHH
Confidence 65443
No 137
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=98.53 E-value=2e-07 Score=98.85 Aligned_cols=148 Identities=20% Similarity=0.216 Sum_probs=104.1
Q ss_pred CCChHHHHHHHHHHH-cC--CcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHH
Q 008605 289 LRPSQIQAMAFPPVV-EG--KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (560)
Q Consensus 289 ~~pt~iQ~~aip~il-~g--~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l 365 (560)
..++|+|..++.... +| +.-||+.|-|+|||++-+-++.. + ..++|+||.+---+.|...++
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~t-i--------------kK~clvLcts~VSVeQWkqQf 365 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACT-I--------------KKSCLVLCTSAVSVEQWKQQF 365 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeee-e--------------cccEEEEecCccCHHHHHHHH
Confidence 357899999998876 44 57899999999999987655432 2 235999999999999999999
Q ss_pred HhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHh--------ccccCCCccEEEEccccccCCCCC
Q 008605 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE--------GILQLINLRCAILDEVDILFNDED 437 (560)
Q Consensus 366 ~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~--------~~~~l~~l~~LViDEah~ll~d~~ 437 (560)
+.+..- .+-.++.++.+... ....++.|+|+|...+..--++ ..+.-..-.++|+||+|.+- ..-
T Consensus 366 k~wsti-~d~~i~rFTsd~Ke-----~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvP-A~M 438 (776)
T KOG1123|consen 366 KQWSTI-QDDQICRFTSDAKE-----RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVP-AKM 438 (776)
T ss_pred Hhhccc-CccceEEeeccccc-----cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccch-HHH
Confidence 888653 34455556654432 2346789999998665422111 01122346789999999987 455
Q ss_pred hHHHHHHHHhhCCCCCcEEEEeccCC
Q 008605 438 FEVALQSLISSSPVTAQYLFVTATLP 463 (560)
Q Consensus 438 f~~~l~~Il~~~~~~~Q~IllSATlp 463 (560)
|+..+..+...+. ++++||+-
T Consensus 439 FRRVlsiv~aHcK-----LGLTATLv 459 (776)
T KOG1123|consen 439 FRRVLSIVQAHCK-----LGLTATLV 459 (776)
T ss_pred HHHHHHHHHHHhh-----ccceeEEe
Confidence 7766666655543 78999984
No 138
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.53 E-value=8.6e-07 Score=102.70 Aligned_cols=172 Identities=22% Similarity=0.186 Sum_probs=108.8
Q ss_pred CChHHHHHHHHHHHc----C----CcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHH
Q 008605 290 RPSQIQAMAFPPVVE----G----KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQV 361 (560)
Q Consensus 290 ~pt~iQ~~aip~il~----g----~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi 361 (560)
.-..||-.|+..+.. . -=++-.|.||+|||++= .=|++.+.. ...+.|..|-.-.|.|-.|+
T Consensus 408 ~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aN-ARImyaLsd---------~~~g~RfsiALGLRTLTLQT 477 (1110)
T TIGR02562 408 PRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLAN-ARAMYALRD---------DKQGARFAIALGLRSLTLQT 477 (1110)
T ss_pred CCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHH-HHHHHHhCC---------CCCCceEEEEccccceeccc
Confidence 346799999988764 1 12455789999999873 234433332 24567888888889998888
Q ss_pred HHHHHhhhcCCCCceEEEEeCCcchHHHHH-------------------------------------------Hhc----
Q 008605 362 LSNCRSLSKCGVPFRSMVVTGGFRQKTQLE-------------------------------------------NLQ---- 394 (560)
Q Consensus 362 ~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~-------------------------------------------~l~---- 394 (560)
-+.+++-... .+=...+++|+....+..+ .+.
T Consensus 478 Gda~r~rL~L-~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k 556 (1110)
T TIGR02562 478 GHALKTRLNL-SDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDK 556 (1110)
T ss_pred hHHHHHhcCC-CccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChh
Confidence 8888765432 1223344444432211110 000
Q ss_pred ----CCCcEEEECHHHHHHHHHh---ccccCC--C--ccEEEEccccccCCCCChHHHHHHHHhhC-CCCCcEEEEeccC
Q 008605 395 ----EGVDVLIATPGRFMFLIKE---GILQLI--N--LRCAILDEVDILFNDEDFEVALQSLISSS-PVTAQYLFVTATL 462 (560)
Q Consensus 395 ----~~~~IlV~TP~~L~~ll~~---~~~~l~--~--l~~LViDEah~ll~d~~f~~~l~~Il~~~-~~~~Q~IllSATl 462 (560)
-..+|+|||++.++..... +...+. . =+.|||||+|.+- ......+.+++... ..+..++++|||+
T Consensus 557 ~~rll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD--~~~~~~L~rlL~w~~~lG~~VlLmSATL 634 (1110)
T TIGR02562 557 EKTLLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYE--PEDLPALLRLVQLAGLLGSRVLLSSATL 634 (1110)
T ss_pred hhhhhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCC--HHHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 0257999999999977622 122111 1 2579999999884 44555566666643 2467899999999
Q ss_pred CHHHHHHHHHhC
Q 008605 463 PVEIYNKLVEVF 474 (560)
Q Consensus 463 p~~v~~~l~~~~ 474 (560)
|+.+...+.+.+
T Consensus 635 P~~l~~~L~~Ay 646 (1110)
T TIGR02562 635 PPALVKTLFRAY 646 (1110)
T ss_pred CHHHHHHHHHHH
Confidence 999888776655
No 139
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.46 E-value=2e-06 Score=98.88 Aligned_cols=64 Identities=33% Similarity=0.479 Sum_probs=51.4
Q ss_pred CCCCChHHHHHHHHHHH---cC------CcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHH
Q 008605 287 NFLRPSQIQAMAFPPVV---EG------KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAEL 357 (560)
Q Consensus 287 g~~~pt~iQ~~aip~il---~g------~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreL 357 (560)
|| .+++-|.+.+..+. .+ +.++|.||||+|||++|++|++...... +-++||-+.|+.|
T Consensus 23 ~~-e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~-----------~k~vVIST~T~~L 90 (697)
T PRK11747 23 GF-IPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAE-----------KKKLVISTATVAL 90 (697)
T ss_pred CC-CcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHc-----------CCeEEEEcCCHHH
Confidence 55 78999998665543 33 6789999999999999999998766532 3469999999999
Q ss_pred HHHHH
Q 008605 358 ASQVL 362 (560)
Q Consensus 358 a~Qi~ 362 (560)
-+|+.
T Consensus 91 QeQL~ 95 (697)
T PRK11747 91 QEQLV 95 (697)
T ss_pred HHHHH
Confidence 99985
No 140
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.41 E-value=2e-05 Score=90.07 Aligned_cols=129 Identities=16% Similarity=0.209 Sum_probs=96.0
Q ss_pred CCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Q 008605 287 NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (560)
Q Consensus 287 g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~ 366 (560)
|. .|+++|...--.+..| -|..+.||-|||++..+|+.-..+. |..+-||+..--||..=.+.+.
T Consensus 76 G~-r~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL~------------GkgVhVVTvNdYLA~RDae~mg 140 (925)
T PRK12903 76 GK-RPYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNALT------------GKGVIVSTVNEYLAERDAEEMG 140 (925)
T ss_pred CC-CcCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHhc------------CCceEEEecchhhhhhhHHHHH
Confidence 54 7889998887666655 4799999999999999998754432 3347788888899998888888
Q ss_pred hhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHH-HHHHhcc------ccCCCccEEEEccccccC
Q 008605 367 SLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFM-FLIKEGI------LQLINLRCAILDEVDILF 433 (560)
Q Consensus 367 ~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~-~ll~~~~------~~l~~l~~LViDEah~ll 433 (560)
.+..+ .++.|++...+.......... .|||+.+|..-|- ++|+.+. .....+.+.||||+|.++
T Consensus 141 ~vy~f-LGLsvG~i~~~~~~~~rr~aY--~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSIL 211 (925)
T PRK12903 141 KVFNF-LGLSVGINKANMDPNLKREAY--ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSIL 211 (925)
T ss_pred HHHHH-hCCceeeeCCCCChHHHHHhc--cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchhee
Confidence 87775 688998888776655443333 4899999987765 4554432 124567899999999765
No 141
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.38 E-value=2.9e-06 Score=98.51 Aligned_cols=144 Identities=18% Similarity=0.192 Sum_probs=87.2
Q ss_pred CcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHH-----hhhc--C-CCCceE
Q 008605 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR-----SLSK--C-GVPFRS 377 (560)
Q Consensus 306 ~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~-----~l~~--~-~~~i~v 377 (560)
.++.+.++||+|||.+|+-.++...... ...+.||+||+.++-..+.+.+. .++. + +..++.
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~----------~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~ 129 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKY----------GLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIEL 129 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHc----------CCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEE
Confidence 3789999999999999988777655432 34579999999998888776554 2222 1 223555
Q ss_pred EEEeCCc-------chHHHHHHhc-------CCCcEEEECHHHHHHHHH-hcc----------cc---CCCc-cEEEEcc
Q 008605 378 MVVTGGF-------RQKTQLENLQ-------EGVDVLIATPGRFMFLIK-EGI----------LQ---LINL-RCAILDE 428 (560)
Q Consensus 378 ~~l~gg~-------~~~~~~~~l~-------~~~~IlV~TP~~L~~ll~-~~~----------~~---l~~l-~~LViDE 428 (560)
..+.++. .....++.+- +..+|+|.|-+.|..-.. +.. .. +... -.||+||
T Consensus 130 ~~~~S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDE 209 (986)
T PRK15483 130 YVINAGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDE 209 (986)
T ss_pred EEEecCcccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEEC
Confidence 5554332 1122323222 147999999998864211 110 11 1111 2589999
Q ss_pred ccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCH
Q 008605 429 VDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPV 464 (560)
Q Consensus 429 ah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~ 464 (560)
.|++-.+ ....+.| ..+.+.. ++.+|||.+.
T Consensus 210 Ph~~~~~---~k~~~~i-~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 210 PHRFPRD---NKFYQAI-EALKPQM-IIRFGATFPD 240 (986)
T ss_pred CCCCCcc---hHHHHHH-HhcCccc-EEEEeeecCC
Confidence 9999631 2233555 3333333 5679999987
No 142
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.38 E-value=1.7e-06 Score=98.97 Aligned_cols=74 Identities=30% Similarity=0.419 Sum_probs=59.6
Q ss_pred HHCCCCCChHHHHHHHHHHH----cCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHH
Q 008605 284 KRQNFLRPSQIQAMAFPPVV----EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELAS 359 (560)
Q Consensus 284 ~~~g~~~pt~iQ~~aip~il----~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~ 359 (560)
..+....|++.|.+.+..+. .++.+++.||||+|||++|++|++...... +..+||.++|+.|-.
T Consensus 9 ~~~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~-----------~~~viist~t~~lq~ 77 (654)
T COG1199 9 VAFPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREE-----------GKKVIISTRTKALQE 77 (654)
T ss_pred hhCCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHc-----------CCcEEEECCCHHHHH
Confidence 34456689999999885543 456699999999999999999999887653 356999999999999
Q ss_pred HHHHHHHhh
Q 008605 360 QVLSNCRSL 368 (560)
Q Consensus 360 Qi~~~l~~l 368 (560)
|+.+....+
T Consensus 78 q~~~~~~~~ 86 (654)
T COG1199 78 QLLEEDLPI 86 (654)
T ss_pred HHHHhhcch
Confidence 988766543
No 143
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.31 E-value=1.2e-05 Score=91.32 Aligned_cols=223 Identities=14% Similarity=0.167 Sum_probs=127.6
Q ss_pred EEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchH
Q 008605 308 CILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387 (560)
Q Consensus 308 vlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~ 387 (560)
.+|.||.|||||.+..-++-+.+. ....++|+|...+.|+.++...++...- .++....-.++....
T Consensus 52 ~vVRSpMGTGKTtaLi~wLk~~l~-----------~~~~~VLvVShRrSL~~sL~~rf~~~~l--~gFv~Y~d~~~~~i~ 118 (824)
T PF02399_consen 52 LVVRSPMGTGKTTALIRWLKDALK-----------NPDKSVLVVSHRRSLTKSLAERFKKAGL--SGFVNYLDSDDYIID 118 (824)
T ss_pred EEEECCCCCCcHHHHHHHHHHhcc-----------CCCCeEEEEEhHHHHHHHHHHHHhhcCC--Ccceeeecccccccc
Confidence 578999999999875444433321 2355799999999999999999876532 123222211111111
Q ss_pred HHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCCChHHHHH-------HHHhhCCCCCcEEEEec
Q 008605 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ-------SLISSSPVTAQYLFVTA 460 (560)
Q Consensus 388 ~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~l~-------~Il~~~~~~~Q~IllSA 460 (560)
. ...+-+++..+.|..+.. ..+.+.++|||||+-..+ .+-|.+.++ .+...+.....+|++-|
T Consensus 119 ~------~~~~rLivqIdSL~R~~~---~~l~~yDvVIIDEv~svL-~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA 188 (824)
T PF02399_consen 119 G------RPYDRLIVQIDSLHRLDG---SLLDRYDVVIIDEVMSVL-NQLFSPTMRQREEVDNLLKELIRNAKTVIVMDA 188 (824)
T ss_pred c------cccCeEEEEehhhhhccc---ccccccCEEEEehHHHHH-HHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecC
Confidence 0 124677777777755532 246678999999999877 333433333 23334455678999999
Q ss_pred cCCHHHHHHHHHhCCCCeE--EeCCCccccCCCceeEEEEc----------CCCC-CCCCC-----------hhhhhhhH
Q 008605 461 TLPVEIYNKLVEVFPDCKV--VMGPGMHRISPGLEEFLVDC----------SGDQ-ESDKT-----------PETAFLNK 516 (560)
Q Consensus 461 Tlp~~v~~~l~~~~~~~~~--i~~~~~~~~~~~i~~~~v~~----------~~~~-~~~~~-----------~~~~~~~K 516 (560)
++.....+++...-++..+ +........-.+-.-.+... ...+ ..... ......+.
T Consensus 189 ~ln~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (824)
T PF02399_consen 189 DLNDQTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDE 268 (824)
T ss_pred CCCHHHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccch
Confidence 9999999999887655333 32221111111111111100 0000 00000 00011222
Q ss_pred HHHHHHHHHhC-CCCcEEEEeCchHHHHHHHHHHHhhc
Q 008605 517 KSALLQLIEKS-PVSKTIVFCNKVCFSYKCNNLFGFFS 553 (560)
Q Consensus 517 ~~~L~~lL~~~-~~~ktIIFcnS~~~a~~la~~Lk~l~ 553 (560)
......++... .++++-|||+|...++.+++..+.+.
T Consensus 269 ~tF~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~ 306 (824)
T PF02399_consen 269 TTFFSELLARLNAGKNICVFSSTVSFAEIVARFCARFT 306 (824)
T ss_pred hhHHHHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcC
Confidence 23333333332 45678899999999999999888763
No 144
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.24 E-value=4.3e-05 Score=86.93 Aligned_cols=161 Identities=21% Similarity=0.173 Sum_probs=104.0
Q ss_pred CChHHHHHHHHHHHc---CC-------cEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHH
Q 008605 290 RPSQIQAMAFPPVVE---GK-------SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELAS 359 (560)
Q Consensus 290 ~pt~iQ~~aip~il~---g~-------dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~ 359 (560)
.+.|+|++.+..+.. |. -+|+.-..|+|||+..+. +++.+++.. +.....--++|||+|. .|+.
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~Is-flwtlLrq~----P~~~~~~~k~lVV~P~-sLv~ 311 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCIS-FIWTLLRQF----PQAKPLINKPLVVAPS-SLVN 311 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHH-HHHHHHHhC----cCccccccccEEEccH-HHHH
Confidence 578999999987652 22 377888999999998554 444444331 1111122579999996 6888
Q ss_pred HHHHHHHhhhcCCCCceEEEEeCCcch--HHHHHHh-----cCCCcEEEECHHHHHHHHHhccccCCCccEEEEcccccc
Q 008605 360 QVLSNCRSLSKCGVPFRSMVVTGGFRQ--KTQLENL-----QEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDIL 432 (560)
Q Consensus 360 Qi~~~l~~l~~~~~~i~v~~l~gg~~~--~~~~~~l-----~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~l 432 (560)
-.++++.++... ..+....++|.... ..+...+ .....|++-+.+.+.+.++ .+....+++||+||.|.+
T Consensus 312 nWkkEF~KWl~~-~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~--~il~~~~glLVcDEGHrl 388 (776)
T KOG0390|consen 312 NWKKEFGKWLGN-HRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCR--KILLIRPGLLVCDEGHRL 388 (776)
T ss_pred HHHHHHHHhccc-cccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHH--HHhcCCCCeEEECCCCCc
Confidence 899999888753 36777777877763 1111111 1224688888888876655 345668899999999998
Q ss_pred CCCCChHHHHHHHHhhCCCCCcEEEEeccCC
Q 008605 433 FNDEDFEVALQSLISSSPVTAQYLFVTATLP 463 (560)
Q Consensus 433 l~d~~f~~~l~~Il~~~~~~~Q~IllSATlp 463 (560)
-+ +-...+.. +..+. ...-|++|.|+=
T Consensus 389 kN--~~s~~~ka-L~~l~-t~rRVLLSGTp~ 415 (776)
T KOG0390|consen 389 KN--SDSLTLKA-LSSLK-TPRRVLLTGTPI 415 (776)
T ss_pred cc--hhhHHHHH-HHhcC-CCceEEeeCCcc
Confidence 73 22222233 33332 445688899974
No 145
>COG4889 Predicted helicase [General function prediction only]
Probab=98.23 E-value=5.9e-06 Score=92.76 Aligned_cols=139 Identities=23% Similarity=0.279 Sum_probs=94.2
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHHcCCc----EEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCC
Q 008605 279 MIESLKRQNFLRPSQIQAMAFPPVVEGKS----CILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPT 354 (560)
Q Consensus 279 ll~~L~~~g~~~pt~iQ~~aip~il~g~d----vlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~Pt 354 (560)
+..+|.-..=.+|+|+|+.|+.+..+|-. -=+++..|+|||+..+ -+...+. ..++|+|+|+
T Consensus 150 ~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsL-kisEala-------------~~~iL~LvPS 215 (1518)
T COG4889 150 LQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSL-KISEALA-------------AARILFLVPS 215 (1518)
T ss_pred cccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHH-HHHHHHh-------------hhheEeecch
Confidence 33343333446899999999999886621 2234567999998754 3444432 2469999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHH-----------------------HH--HhcCCCcEEEECHHHHHH
Q 008605 355 AELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ-----------------------LE--NLQEGVDVLIATPGRFMF 409 (560)
Q Consensus 355 reLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~-----------------------~~--~l~~~~~IlV~TP~~L~~ 409 (560)
.+|..|..+.+..-.. .+++...++++.....- +. ....+--|+++|...+..
T Consensus 216 IsLLsQTlrew~~~~~--l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~ 293 (1518)
T COG4889 216 ISLLSQTLREWTAQKE--LDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPR 293 (1518)
T ss_pred HHHHHHHHHHHhhccC--ccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHH
Confidence 9999999988865432 45666666655421110 11 112345699999999887
Q ss_pred HHHhccccCCCccEEEEccccccC
Q 008605 410 LIKEGILQLINLRCAILDEVDILF 433 (560)
Q Consensus 410 ll~~~~~~l~~l~~LViDEah~ll 433 (560)
.-.....-+..++++|.||||+--
T Consensus 294 i~eAQe~G~~~fDliicDEAHRTt 317 (1518)
T COG4889 294 IKEAQEAGLDEFDLIICDEAHRTT 317 (1518)
T ss_pred HHHHHHcCCCCccEEEecchhccc
Confidence 766656668899999999999854
No 146
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=98.19 E-value=2.3e-05 Score=87.33 Aligned_cols=154 Identities=21% Similarity=0.298 Sum_probs=100.9
Q ss_pred CChHHHHHHHHHHH----cCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHH
Q 008605 290 RPSQIQAMAFPPVV----EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (560)
Q Consensus 290 ~pt~iQ~~aip~il----~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l 365 (560)
.+.++|.+.+..+. +|-|.|+.-..|-|||+-- +.++..+.... ...|| -||+||.-.|. ...+++
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQt-Is~l~yl~~~~-------~~~GP-fLVi~P~StL~-NW~~Ef 236 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQT-ISLLGYLKGRK-------GIPGP-FLVIAPKSTLD-NWMNEF 236 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHH-HHHHHHHHHhc-------CCCCC-eEEEeeHhhHH-HHHHHH
Confidence 68888988877654 6778999999999999863 34444444321 12344 57889987764 345555
Q ss_pred HhhhcCCCCceEEEEeCCcchHHHHH-Hh--cCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCCChHHHH
Q 008605 366 RSLSKCGVPFRSMVVTGGFRQKTQLE-NL--QEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVAL 442 (560)
Q Consensus 366 ~~l~~~~~~i~v~~l~gg~~~~~~~~-~l--~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~l 442 (560)
+++ .+++++++++|+........ .+ ....+|+|+|.+..+.-- ..+.--.-+|+||||||++-+ -...+
T Consensus 237 ~rf---~P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk--~~lk~~~W~ylvIDEaHRiKN---~~s~L 308 (971)
T KOG0385|consen 237 KRF---TPSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDK--SFLKKFNWRYLVIDEAHRIKN---EKSKL 308 (971)
T ss_pred HHh---CCCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhH--HHHhcCCceEEEechhhhhcc---hhhHH
Confidence 555 47899999999875433322 11 236899999999886431 112222457999999999973 33444
Q ss_pred HHHHhhCCCCCcEEEEeccC
Q 008605 443 QSLISSSPVTAQYLFVTATL 462 (560)
Q Consensus 443 ~~Il~~~~~~~Q~IllSATl 462 (560)
..+++.+.... -+++|.|.
T Consensus 309 ~~~lr~f~~~n-rLLlTGTP 327 (971)
T KOG0385|consen 309 SKILREFKTDN-RLLLTGTP 327 (971)
T ss_pred HHHHHHhcccc-eeEeeCCc
Confidence 56666655333 46667886
No 147
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.13 E-value=1.1e-05 Score=92.40 Aligned_cols=127 Identities=16% Similarity=0.178 Sum_probs=96.3
Q ss_pred CChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhh
Q 008605 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (560)
Q Consensus 290 ~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~ 369 (560)
.|+++|...--++ ..--|+.+.||-|||+++.+|+.-..+. |..+-||+++..||.+=++.+..+.
T Consensus 85 r~ydVQliGgl~L--h~G~IAEM~TGEGKTL~atlpaylnAL~------------GkgVhVVTvNdYLA~RDae~m~~vy 150 (939)
T PRK12902 85 RHFDVQLIGGMVL--HEGQIAEMKTGEGKTLVATLPSYLNALT------------GKGVHVVTVNDYLARRDAEWMGQVH 150 (939)
T ss_pred CcchhHHHhhhhh--cCCceeeecCCCChhHHHHHHHHHHhhc------------CCCeEEEeCCHHHHHhHHHHHHHHH
Confidence 6788887765444 4556889999999999999998865543 4458999999999999999998888
Q ss_pred cCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHH-HHHHhc------cccCCCccEEEEccccccC
Q 008605 370 KCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFM-FLIKEG------ILQLINLRCAILDEVDILF 433 (560)
Q Consensus 370 ~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~-~ll~~~------~~~l~~l~~LViDEah~ll 433 (560)
.+ .++.|.++.++....+... .-.|||+.+|+..|- ++|+.+ ......+.+.||||+|.++
T Consensus 151 ~~-LGLtvg~i~~~~~~~err~--aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 151 RF-LGLSVGLIQQDMSPEERKK--NYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred HH-hCCeEEEECCCCChHHHHH--hcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 75 6899999887766554333 346999999998873 333321 1234678899999999876
No 148
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.97 E-value=7e-05 Score=73.13 Aligned_cols=73 Identities=18% Similarity=0.347 Sum_probs=50.8
Q ss_pred ChHHHHHHHHHHHcCCc-EEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHh
Q 008605 291 PSQIQAMAFPPVVEGKS-CILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS 367 (560)
Q Consensus 291 pt~iQ~~aip~il~g~d-vlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~ 367 (560)
+++-|.+|+..++.... .+|.+|.|+|||.... .++..+..... ......+.++|+++|+..-+.++.+.+.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~-~~i~~~~~~~~---~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTLA-SIIAQLLQRFK---SRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHH-HHHHHH----------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHH-HHHHHhccchh---hhhhhccccceeecCCchhHHHHHHHHHh
Confidence 57889999999999888 9999999999995433 34444321000 00124577899999999999999999887
No 149
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.95 E-value=6.6e-05 Score=89.04 Aligned_cols=136 Identities=23% Similarity=0.283 Sum_probs=90.0
Q ss_pred CcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcc
Q 008605 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385 (560)
Q Consensus 306 ~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~ 385 (560)
+.-+|.--+|||||+..+..+ ..+... ...|.++||+-.++|-.|+.+.+..+.... .... ...+
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A-~~l~~~---------~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~--~~~~---~~~s 338 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLA-RLLLEL---------PKNPKVLFVVDRKDLDDQTSDEFQSFGKVA--FNDP---KAES 338 (962)
T ss_pred CceEEEeecCCchHHHHHHHH-HHHHhc---------cCCCeEEEEechHHHHHHHHHHHHHHHHhh--hhcc---cccC
Confidence 357899999999999854333 333322 467899999999999999999999886521 1111 2334
Q ss_pred hHHHHHHhcCC-CcEEEECHHHHHHHHHhc---cccCCCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEecc
Q 008605 386 QKTQLENLQEG-VDVLIATPGRFMFLIKEG---ILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTAT 461 (560)
Q Consensus 386 ~~~~~~~l~~~-~~IlV~TP~~L~~ll~~~---~~~l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSAT 461 (560)
.....+.+..+ -.|+|+|-.++....... ...-.++ +||+||||+-- ++..-..+...++ +..+++||.|
T Consensus 339 ~~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~i-vvI~DEaHRSQ----~G~~~~~~~~~~~-~a~~~gFTGT 412 (962)
T COG0610 339 TSELKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNV-VVIIDEAHRSQ----YGELAKLLKKALK-KAIFIGFTGT 412 (962)
T ss_pred HHHHHHHHhcCCCcEEEEEecccchhhhcccccccCCCcE-EEEEechhhcc----ccHHHHHHHHHhc-cceEEEeeCC
Confidence 44444445433 489999999998777653 1122222 57889999764 3333233333333 4889999999
Q ss_pred C
Q 008605 462 L 462 (560)
Q Consensus 462 l 462 (560)
+
T Consensus 413 P 413 (962)
T COG0610 413 P 413 (962)
T ss_pred c
Confidence 7
No 150
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.93 E-value=4.8e-05 Score=73.98 Aligned_cols=124 Identities=23% Similarity=0.295 Sum_probs=71.5
Q ss_pred CChHHHHHHHHHHHcCC--cEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHh
Q 008605 290 RPSQIQAMAFPPVVEGK--SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS 367 (560)
Q Consensus 290 ~pt~iQ~~aip~il~g~--dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~ 367 (560)
++++-|.+|+..++... -+++.++.|+|||.+ +-.+...+.. .+.++++++||...+..+.+...
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~-----------~g~~v~~~apT~~Aa~~L~~~~~- 67 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEA-----------AGKRVIGLAPTNKAAKELREKTG- 67 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHH-----------TT--EEEEESSHHHHHHHHHHHT-
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHh-----------CCCeEEEECCcHHHHHHHHHhhC-
Confidence 36788999999997544 367789999999975 3334444433 24579999999998887665531
Q ss_pred hhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhc----cccCCCccEEEEccccccCCCCChHHHHH
Q 008605 368 LSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG----ILQLINLRCAILDEVDILFNDEDFEVALQ 443 (560)
Q Consensus 368 l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~----~~~l~~l~~LViDEah~ll~d~~f~~~l~ 443 (560)
+.+ .|-.+++...... ...+...++||||||-++. ...+.
T Consensus 68 -------~~a------------------------~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~-----~~~~~ 111 (196)
T PF13604_consen 68 -------IEA------------------------QTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD-----SRQLA 111 (196)
T ss_dssp -------S-E------------------------EEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B-----HHHHH
T ss_pred -------cch------------------------hhHHHHHhcCCcccccccccCCcccEEEEecccccC-----HHHHH
Confidence 111 1111111100000 0014566799999998775 34567
Q ss_pred HHHhhCCC-CCcEEEEeccC
Q 008605 444 SLISSSPV-TAQYLFVTATL 462 (560)
Q Consensus 444 ~Il~~~~~-~~Q~IllSATl 462 (560)
.++...+. +.++|++-=+.
T Consensus 112 ~ll~~~~~~~~klilvGD~~ 131 (196)
T PF13604_consen 112 RLLRLAKKSGAKLILVGDPN 131 (196)
T ss_dssp HHHHHS-T-T-EEEEEE-TT
T ss_pred HHHHHHHhcCCEEEEECCcc
Confidence 77777765 67777766543
No 151
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.83 E-value=8.3e-05 Score=72.67 Aligned_cols=144 Identities=14% Similarity=0.186 Sum_probs=72.4
Q ss_pred CChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHH-------H
Q 008605 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQV-------L 362 (560)
Q Consensus 290 ~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi-------~ 362 (560)
-.+.-|..++.+++...-+++.+|.|||||+..+..+++.+... ..-+.+|+-|..+....+ .
T Consensus 4 p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g----------~~~kiii~Rp~v~~~~~lGflpG~~~ 73 (205)
T PF02562_consen 4 PKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEG----------EYDKIIITRPPVEAGEDLGFLPGDLE 73 (205)
T ss_dssp --SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTT----------S-SEEEEEE-S--TT----SS-----
T ss_pred CCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhC----------CCcEEEEEecCCCCccccccCCCCHH
Confidence 45788999999999777789999999999999988888887653 234688888876542221 1
Q ss_pred HHHHhhhcCCC-CceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCCChHHH
Q 008605 363 SNCRSLSKCGV-PFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVA 441 (560)
Q Consensus 363 ~~l~~l~~~~~-~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~ 441 (560)
+.+.-+..+-. .+. .+.+...... +.....|-+..+.-+ + .-.+.+ .+||||||..+. ..+
T Consensus 74 eK~~p~~~p~~d~l~--~~~~~~~~~~----~~~~~~Ie~~~~~~i----R--Grt~~~-~~iIvDEaQN~t-----~~~ 135 (205)
T PF02562_consen 74 EKMEPYLRPIYDALE--ELFGKEKLEE----LIQNGKIEIEPLAFI----R--GRTFDN-AFIIVDEAQNLT-----PEE 135 (205)
T ss_dssp ----TTTHHHHHHHT--TTS-TTCHHH----HHHTTSEEEEEGGGG----T--T--B-S-EEEEE-SGGG-------HHH
T ss_pred HHHHHHHHHHHHHHH--HHhChHhHHH----HhhcCeEEEEehhhh----c--Cccccc-eEEEEecccCCC-----HHH
Confidence 11110100000 000 0001111111 112234555443322 1 112332 689999998665 467
Q ss_pred HHHHHhhCCCCCcEEEEecc
Q 008605 442 LQSLISSSPVTAQYLFVTAT 461 (560)
Q Consensus 442 l~~Il~~~~~~~Q~IllSAT 461 (560)
++.++.++..+++++++--.
T Consensus 136 ~k~ilTR~g~~skii~~GD~ 155 (205)
T PF02562_consen 136 LKMILTRIGEGSKIIITGDP 155 (205)
T ss_dssp HHHHHTTB-TT-EEEEEE--
T ss_pred HHHHHcccCCCcEEEEecCc
Confidence 88889999888888886543
No 152
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=97.83 E-value=0.00016 Score=81.19 Aligned_cols=164 Identities=18% Similarity=0.209 Sum_probs=99.7
Q ss_pred cCCCHHHHHHHHHCCCCCChHHHHHHHHHHH----cCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEE
Q 008605 273 LGCSDYMIESLKRQNFLRPSQIQAMAFPPVV----EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRV 348 (560)
Q Consensus 273 l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il----~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~a 348 (560)
+.+|..|... +.++|+..+..+. ++.--|+--..|-|||.-.+ ..|..+.... .-...|
T Consensus 196 ~~vPg~I~~~--------Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQii-sFLaaL~~S~--------k~~~pa 258 (923)
T KOG0387|consen 196 FKVPGFIWSK--------LFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQII-SFLAALHHSG--------KLTKPA 258 (923)
T ss_pred ccccHHHHHH--------hhHHHHHHHHHHHHHHhccCCCeecccccCccchhHH-HHHHHHhhcc--------cccCce
Confidence 4566666554 4568999987765 34556778899999997532 2222222110 112459
Q ss_pred EEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchH--------HHHHH-----hcCCCcEEEECHHHHHHHHHhcc
Q 008605 349 VILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK--------TQLEN-----LQEGVDVLIATPGRFMFLIKEGI 415 (560)
Q Consensus 349 Lil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~--------~~~~~-----l~~~~~IlV~TP~~L~~ll~~~~ 415 (560)
|||||. .++.|..+++..+. +.++|.+++|..... ..... ...+.+|+|+|.+.+.-. ...
T Consensus 259 LIVCP~-Tii~qW~~E~~~w~---p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~--~d~ 332 (923)
T KOG0387|consen 259 LIVCPA-TIIHQWMKEFQTWW---PPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ--GDD 332 (923)
T ss_pred EEEccH-HHHHHHHHHHHHhC---cceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc--Ccc
Confidence 999997 57788888888775 578998888765420 01111 113467999998776321 112
Q ss_pred ccCCCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCC
Q 008605 416 LQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLP 463 (560)
Q Consensus 416 ~~l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp 463 (560)
+.-..-.++|+||.|.+-+ .. ..+...+..++ ..+.|++|.|+=
T Consensus 333 l~~~~W~y~ILDEGH~IrN-pn--s~islackki~-T~~RiILSGTPi 376 (923)
T KOG0387|consen 333 LLGILWDYVILDEGHRIRN-PN--SKISLACKKIR-TVHRIILSGTPI 376 (923)
T ss_pred cccccccEEEecCcccccC-Cc--cHHHHHHHhcc-ccceEEeeCccc
Confidence 2223457899999999973 22 23333344443 455677788863
No 153
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=97.74 E-value=0.00018 Score=80.74 Aligned_cols=155 Identities=21% Similarity=0.247 Sum_probs=98.7
Q ss_pred ChHHHHHHHHHHH----cCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Q 008605 291 PSQIQAMAFPPVV----EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (560)
Q Consensus 291 pt~iQ~~aip~il----~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~ 366 (560)
+.++|.-.+..+. .+-+.|+.-..|-|||.- .++.+..+.+.. ..|| -|||||.-.| .++++
T Consensus 400 LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~g--------~~gp-HLVVvPsSTl----eNWlr 465 (941)
T KOG0389|consen 400 LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQIG--------NPGP-HLVVVPSSTL----ENWLR 465 (941)
T ss_pred ccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHcC--------CCCC-cEEEecchhH----HHHHH
Confidence 6778888877643 455778889999999965 345555555432 2344 5788898765 34455
Q ss_pred hhhcCCCCceEEEEeCCcchHHHHHHhc----CCCcEEEECHHHHHHHH-HhccccCCCccEEEEccccccCCCCChHHH
Q 008605 367 SLSKCGVPFRSMVVTGGFRQKTQLENLQ----EGVDVLIATPGRFMFLI-KEGILQLINLRCAILDEVDILFNDEDFEVA 441 (560)
Q Consensus 367 ~l~~~~~~i~v~~l~gg~~~~~~~~~l~----~~~~IlV~TP~~L~~ll-~~~~~~l~~l~~LViDEah~ll~d~~f~~~ 441 (560)
++.++.+.++|...+|......+++... ...+|||+|......-- .+..+.-.++.++|+||.|++- +.. ..-
T Consensus 466 Ef~kwCPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLK-N~~-SeR 543 (941)
T KOG0389|consen 466 EFAKWCPSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLK-NRT-SER 543 (941)
T ss_pred HHHHhCCceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhh-ccc-hHH
Confidence 5555557899999999887665544432 25899999986654111 1112223467899999999987 322 222
Q ss_pred HHHHHhhCCCCCcEEEEeccCC
Q 008605 442 LQSLISSSPVTAQYLFVTATLP 463 (560)
Q Consensus 442 l~~Il~~~~~~~Q~IllSATlp 463 (560)
++.++... ..+.|++|.|.-
T Consensus 544 y~~LM~I~--An~RlLLTGTPL 563 (941)
T KOG0389|consen 544 YKHLMSIN--ANFRLLLTGTPL 563 (941)
T ss_pred HHHhcccc--ccceEEeeCCcc
Confidence 33333322 345688888863
No 154
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=97.63 E-value=0.0015 Score=75.83 Aligned_cols=152 Identities=18% Similarity=0.249 Sum_probs=96.9
Q ss_pred ChHHHHHHHHHHH----cCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Q 008605 291 PSQIQAMAFPPVV----EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (560)
Q Consensus 291 pt~iQ~~aip~il----~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~ 366 (560)
++.+|...+..+. +.-|-|+.-..|-|||.- .+.++.++..++- .-|| -|||+||--+.+ ..-+|+
T Consensus 616 LReYQkiGLdWLatLYeknlNGILADEmGLGKTIQ-tISllAhLACeeg-------nWGP-HLIVVpTsviLn-WEMElK 685 (1958)
T KOG0391|consen 616 LREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQ-TISLLAHLACEEG-------NWGP-HLIVVPTSVILN-WEMELK 685 (1958)
T ss_pred HHHHHHhhHHHHHHHHHhcccceehhhhcccchhH-HHHHHHHHHhccc-------CCCC-ceEEeechhhhh-hhHHHh
Confidence 4456887776543 334778889999999976 4566667665532 2344 467788865432 444566
Q ss_pred hhhcCCCCceEEEEeCCcchHHHHHHh---cCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCCChH-HHH
Q 008605 367 SLSKCGVPFRSMVVTGGFRQKTQLENL---QEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFE-VAL 442 (560)
Q Consensus 367 ~l~~~~~~i~v~~l~gg~~~~~~~~~l---~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~-~~l 442 (560)
+++ .++++..++|........+.= .+..||.|+++..+.+-+.. +.-.+-+|+|+||||.+- +|. ..+
T Consensus 686 Rwc---PglKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~A--FkrkrWqyLvLDEaqnIK---nfksqrW 757 (1958)
T KOG0391|consen 686 RWC---PGLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTA--FKRKRWQYLVLDEAQNIK---NFKSQRW 757 (1958)
T ss_pred hhC---CcceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHH--HHhhccceeehhhhhhhc---chhHHHH
Confidence 664 689999999876543322211 13468999998887755442 233466899999999986 333 334
Q ss_pred HHHHhhCCCCCcEEEEeccC
Q 008605 443 QSLISSSPVTAQYLFVTATL 462 (560)
Q Consensus 443 ~~Il~~~~~~~Q~IllSATl 462 (560)
+.++.. + ..|.++++.|.
T Consensus 758 QAllnf-n-sqrRLLLtgTP 775 (1958)
T KOG0391|consen 758 QALLNF-N-SQRRLLLTGTP 775 (1958)
T ss_pred HHHhcc-c-hhheeeecCCc
Confidence 444433 2 34567777775
No 155
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.61 E-value=0.00095 Score=68.49 Aligned_cols=171 Identities=18% Similarity=0.134 Sum_probs=105.8
Q ss_pred ccCCCHHHHHHHHHCCCCCChHHHHHHHHHHH----------cCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCC
Q 008605 272 ELGCSDYMIESLKRQNFLRPSQIQAMAFPPVV----------EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKS 341 (560)
Q Consensus 272 ~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il----------~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~ 341 (560)
.+.|++.++.. ..++..|.+++-.+. ...-+++--.||.||--...--|++.+.+.
T Consensus 25 ~~~lp~~~~~~------g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G-------- 90 (303)
T PF13872_consen 25 RLHLPEEVIDS------GLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG-------- 90 (303)
T ss_pred ccCCCHHHHhc------ccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC--------
Confidence 34566655443 246777888775443 123467777999999876655566665532
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhc---cc--
Q 008605 342 TSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG---IL-- 416 (560)
Q Consensus 342 ~~~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~---~~-- 416 (560)
..++|++..+..|-.+..+.++.++.. .+.+..+.. ..... ...+ .-.||++|...|...-..+ ..
T Consensus 91 ---r~r~vwvS~s~dL~~Da~RDl~DIG~~--~i~v~~l~~-~~~~~-~~~~--~~GvlF~TYs~L~~~~~~~~~~~sRl 161 (303)
T PF13872_consen 91 ---RKRAVWVSVSNDLKYDAERDLRDIGAD--NIPVHPLNK-FKYGD-IIRL--KEGVLFSTYSTLISESQSGGKYRSRL 161 (303)
T ss_pred ---CCceEEEECChhhhhHHHHHHHHhCCC--cccceechh-hccCc-CCCC--CCCccchhHHHHHhHHhccCCccchH
Confidence 346999999999999999999998753 344433321 10000 0112 2469999998887654321 11
Q ss_pred -----cC--CCccEEEEccccccCCCCC-------hHHHHHHHHhhCCCCCcEEEEeccCCHHH
Q 008605 417 -----QL--INLRCAILDEVDILFNDED-------FEVALQSLISSSPVTAQYLFVTATLPVEI 466 (560)
Q Consensus 417 -----~l--~~l~~LViDEah~ll~d~~-------f~~~l~~Il~~~~~~~Q~IllSATlp~~v 466 (560)
++ ..=.+||+||||.+-+... ....+..|...+| +.+++.+|||--.+.
T Consensus 162 ~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP-~ARvvY~SATgasep 224 (303)
T PF13872_consen 162 DQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLP-NARVVYASATGASEP 224 (303)
T ss_pred HHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCC-CCcEEEecccccCCC
Confidence 11 1123799999999874211 3345556666775 556999999985543
No 156
>PRK10536 hypothetical protein; Provisional
Probab=97.50 E-value=0.0021 Score=64.81 Aligned_cols=146 Identities=13% Similarity=0.129 Sum_probs=81.7
Q ss_pred CCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHH-----
Q 008605 286 QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQ----- 360 (560)
Q Consensus 286 ~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Q----- 360 (560)
.++.--+..|...+.++.+...+++.+++|+|||+......++.+...+ .-+++|.-|+.+....
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~----------~~kIiI~RP~v~~ge~LGfLP 124 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKD----------VDRIIVTRPVLQADEDLGFLP 124 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCC----------eeEEEEeCCCCCchhhhCcCC
Confidence 3555678889999999988888899999999999987776666554321 2245555566442211
Q ss_pred --HHHHHHhhhcCCC-CceEEEEeCCcchHHHHHHh--cCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCC
Q 008605 361 --VLSNCRSLSKCGV-PFRSMVVTGGFRQKTQLENL--QEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFND 435 (560)
Q Consensus 361 --i~~~l~~l~~~~~-~i~v~~l~gg~~~~~~~~~l--~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d 435 (560)
+.+.+..+..+-. .+.. +.|.. ..+.+ ...-.|-|... .+++... | .-.+||||||+.+-
T Consensus 125 G~~~eK~~p~~~pi~D~L~~--~~~~~----~~~~~~~~~~~~Iei~~l----~ymRGrt--l-~~~~vIvDEaqn~~-- 189 (262)
T PRK10536 125 GDIAEKFAPYFRPVYDVLVR--RLGAS----FMQYCLRPEIGKVEIAPF----AYMRGRT--F-ENAVVILDEAQNVT-- 189 (262)
T ss_pred CCHHHHHHHHHHHHHHHHHH--HhChH----HHHHHHHhccCcEEEecH----HHhcCCc--c-cCCEEEEechhcCC--
Confidence 1111111111000 0000 01111 11111 11123445442 2233222 3 23789999999775
Q ss_pred CChHHHHHHHHhhCCCCCcEEEEe
Q 008605 436 EDFEVALQSLISSSPVTAQYLFVT 459 (560)
Q Consensus 436 ~~f~~~l~~Il~~~~~~~Q~IllS 459 (560)
..+++.++..+..+.++|++-
T Consensus 190 ---~~~~k~~ltR~g~~sk~v~~G 210 (262)
T PRK10536 190 ---AAQMKMFLTRLGENVTVIVNG 210 (262)
T ss_pred ---HHHHHHHHhhcCCCCEEEEeC
Confidence 267888888888888877754
No 157
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.50 E-value=0.00043 Score=80.08 Aligned_cols=74 Identities=19% Similarity=0.239 Sum_probs=61.3
Q ss_pred CCCCChHHHHHHHHHH----HcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHH
Q 008605 287 NFLRPSQIQAMAFPPV----VEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVL 362 (560)
Q Consensus 287 g~~~pt~iQ~~aip~i----l~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~ 362 (560)
-|..++|.|.+.+..+ ..+.++++.||||+|||++.+.|++...... ...++++|.+.|..=..|+.
T Consensus 7 Py~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~---------~~~~kIiy~sRThsQl~q~i 77 (705)
T TIGR00604 7 PYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEK---------PEVRKIIYASRTHSQLEQAT 77 (705)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhc---------cccccEEEEcccchHHHHHH
Confidence 4666799998887654 4688999999999999999999999876543 23468999999999999999
Q ss_pred HHHHhhh
Q 008605 363 SNCRSLS 369 (560)
Q Consensus 363 ~~l~~l~ 369 (560)
++++++.
T Consensus 78 ~Elk~~~ 84 (705)
T TIGR00604 78 EELRKLM 84 (705)
T ss_pred HHHHhhh
Confidence 9998853
No 158
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=97.49 E-value=0.00065 Score=72.85 Aligned_cols=150 Identities=20% Similarity=0.221 Sum_probs=94.2
Q ss_pred CChHHHHHHHHHHH-cCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhh
Q 008605 290 RPSQIQAMAFPPVV-EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (560)
Q Consensus 290 ~pt~iQ~~aip~il-~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l 368 (560)
.+-|+|.+.+...+ .|-.+++.-..|-|||+-++. +. .....++. .|||||.- |-....+.+..+
T Consensus 198 ~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAla-IA-~yyraEwp-----------lliVcPAs-vrftWa~al~r~ 263 (689)
T KOG1000|consen 198 RLLPFQREGVIFALERGGRILLADEMGLGKTIQALA-IA-RYYRAEWP-----------LLIVCPAS-VRFTWAKALNRF 263 (689)
T ss_pred hhCchhhhhHHHHHhcCCeEEEecccccchHHHHHH-HH-HHHhhcCc-----------EEEEecHH-HhHHHHHHHHHh
Confidence 34578999987755 677899999999999987543 22 22223222 78899963 444566666666
Q ss_pred hcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCCChHHHHHHHHhh
Q 008605 369 SKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448 (560)
Q Consensus 369 ~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~l~~Il~~ 448 (560)
.... ..+.++.++.+.... +.....|.|.+.+.+..+-. .+.-...+++|+||.|++- +.. ..-.+.++..
T Consensus 264 lps~--~pi~vv~~~~D~~~~---~~t~~~v~ivSye~ls~l~~--~l~~~~~~vvI~DEsH~Lk-~sk-tkr~Ka~~dl 334 (689)
T KOG1000|consen 264 LPSI--HPIFVVDKSSDPLPD---VCTSNTVAIVSYEQLSLLHD--ILKKEKYRVVIFDESHMLK-DSK-TKRTKAATDL 334 (689)
T ss_pred cccc--cceEEEecccCCccc---cccCCeEEEEEHHHHHHHHH--HHhcccceEEEEechhhhh-ccc-hhhhhhhhhH
Confidence 5422 234555555443221 11225688999888764433 2333457899999999997 332 2224555555
Q ss_pred CCCCCcEEEEeccC
Q 008605 449 SPVTAQYLFVTATL 462 (560)
Q Consensus 449 ~~~~~Q~IllSATl 462 (560)
+..-..+|++|.|.
T Consensus 335 lk~akhvILLSGTP 348 (689)
T KOG1000|consen 335 LKVAKHVILLSGTP 348 (689)
T ss_pred HHHhhheEEecCCc
Confidence 55556789999997
No 159
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.46 E-value=0.00045 Score=78.26 Aligned_cols=144 Identities=17% Similarity=0.189 Sum_probs=77.9
Q ss_pred cEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHH---hhh-c--C-CCCceEEE
Q 008605 307 SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR---SLS-K--C-GVPFRSMV 379 (560)
Q Consensus 307 dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~---~l~-~--~-~~~i~v~~ 379 (560)
|+=|.+.||+|||.+|+-.++..-.. ..-.+-||+|||.+.-.-++...+ +.+ + + +..+....
T Consensus 76 NiDI~METGTGKTy~YlrtmfeLhk~----------YG~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i 145 (985)
T COG3587 76 NIDILMETGTGKTYTYLRTMFELHKK----------YGLFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYI 145 (985)
T ss_pred eeeEEEecCCCceeeHHHHHHHHHHH----------hCceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEe
Confidence 67899999999999998666554332 234579999999887554333332 222 1 1 12233222
Q ss_pred EeCCcchHHHHHHhcCCCcEEEECHHHHHH------HHHhccccCC--------------Cc-cEEEEccccccCCCCCh
Q 008605 380 VTGGFRQKTQLENLQEGVDVLIATPGRFMF------LIKEGILQLI--------------NL-RCAILDEVDILFNDEDF 438 (560)
Q Consensus 380 l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~------ll~~~~~~l~--------------~l-~~LViDEah~ll~d~~f 438 (560)
. +.......-.-.+.+.|++.|-..+.. +++....... .+ -.+||||-|.|..+..+
T Consensus 146 ~--~~~~~~~~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~~k~ 223 (985)
T COG3587 146 Y--DEDIEKFKFKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEPHRFLGDDKT 223 (985)
T ss_pred e--chHHHHHhhccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEEecChhhcccchHH
Confidence 2 111111111223457888888655532 2222111111 12 25899999999853222
Q ss_pred HHHHHHHHhhCCCCCcEEEEeccCCHHHH
Q 008605 439 EVALQSLISSSPVTAQYLFVTATLPVEIY 467 (560)
Q Consensus 439 ~~~l~~Il~~~~~~~Q~IllSATlp~~v~ 467 (560)
+..|.... ..-++=++||++....
T Consensus 224 ---~~~i~~l~--pl~ilRfgATfkd~y~ 247 (985)
T COG3587 224 ---YGAIKQLN--PLLILRFGATFKDEYN 247 (985)
T ss_pred ---HHHHHhhC--ceEEEEecccchhhhc
Confidence 23332222 1225679999987654
No 160
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.45 E-value=0.0005 Score=72.89 Aligned_cols=109 Identities=17% Similarity=0.168 Sum_probs=67.1
Q ss_pred cEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcch
Q 008605 307 SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386 (560)
Q Consensus 307 dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~ 386 (560)
-++|.+..|||||+..+ -++..+. ....+..++++++...|...+...+......
T Consensus 3 v~~I~G~aGTGKTvla~-~l~~~l~---------~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~--------------- 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVLAL-NLAKELQ---------NSEEGKKVLYLCGNHPLRNKLREQLAKKYNP--------------- 57 (352)
T ss_pred EEEEEecCCcCHHHHHH-HHHHHhh---------ccccCCceEEEEecchHHHHHHHHHhhhccc---------------
Confidence 36889999999998744 3333331 1134667999999999998888777544200
Q ss_pred HHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCC------CChHHHHHHHHhh
Q 008605 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFND------EDFEVALQSLISS 448 (560)
Q Consensus 387 ~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d------~~f~~~l~~Il~~ 448 (560)
......+..+..+...+..........++|||||||++... ......+..+++.
T Consensus 58 --------~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 58 --------KLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred --------chhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 00112233344443333222345667899999999999841 1234667777665
No 161
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.44 E-value=0.00044 Score=76.79 Aligned_cols=139 Identities=20% Similarity=0.220 Sum_probs=88.1
Q ss_pred CChHHHHHHHHHHHc-----CCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHH
Q 008605 290 RPSQIQAMAFPPVVE-----GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (560)
Q Consensus 290 ~pt~iQ~~aip~il~-----g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~ 364 (560)
.+-|+|..++..+.- +.--|+...-|-|||+..+--+++.-.......-.+.... .+|||||- .|+.|.+.+
T Consensus 325 ~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~--~TLII~Pa-Sli~qW~~E 401 (901)
T KOG4439|consen 325 ELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESAS--KTLIICPA-SLIHQWEAE 401 (901)
T ss_pred ecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccC--CeEEeCcH-HHHHHHHHH
Confidence 357899999877652 2346777889999999866556554433332222222222 59999995 588888888
Q ss_pred HHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHH----HHHhc--cccCCCc--cEEEEccccccC
Q 008605 365 CRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMF----LIKEG--ILQLINL--RCAILDEVDILF 433 (560)
Q Consensus 365 l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~----ll~~~--~~~l~~l--~~LViDEah~ll 433 (560)
+..-... ..++|.+++|.....-..+.+ ..+||+|+|+.-+.. -+..+ ...|.+| ..||+||||.+-
T Consensus 402 v~~rl~~-n~LsV~~~HG~n~r~i~~~~L-~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~Ir 476 (901)
T KOG4439|consen 402 VARRLEQ-NALSVYLYHGPNKREISAKEL-RKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIR 476 (901)
T ss_pred HHHHHhh-cceEEEEecCCccccCCHHHH-hhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhc
Confidence 8655432 467888888776433233333 348999999866543 11111 1123334 469999999987
No 162
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.43 E-value=0.0012 Score=70.66 Aligned_cols=126 Identities=21% Similarity=0.258 Sum_probs=85.3
Q ss_pred CChHHHHHHHHHHHcCC-----cEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHH
Q 008605 290 RPSQIQAMAFPPVVEGK-----SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (560)
Q Consensus 290 ~pt~iQ~~aip~il~g~-----dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~ 364 (560)
.+-|+|.+.+-.+.... .-|+.-..|.|||.-.+..++..+ .+...|||+|+.+| .|..++
T Consensus 184 ~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~-------------~ra~tLVvaP~VAl-mQW~nE 249 (791)
T KOG1002|consen 184 PLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEV-------------DRAPTLVVAPTVAL-MQWKNE 249 (791)
T ss_pred cchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhcc-------------ccCCeeEEccHHHH-HHHHHH
Confidence 45678988876655332 346677899999987554444322 23349999999987 577788
Q ss_pred HHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhcc-------------ccCCCcc--EEEEccc
Q 008605 365 CRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGI-------------LQLINLR--CAILDEV 429 (560)
Q Consensus 365 l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~-------------~~l~~l~--~LViDEa 429 (560)
+..+.. ..+++...+|...... .+.+ .+.|++++|...+-...+... ..|.+++ .||+|||
T Consensus 250 I~~~T~--gslkv~~YhG~~R~~n-ikel-~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEA 325 (791)
T KOG1002|consen 250 IERHTS--GSLKVYIYHGAKRDKN-IKEL-MNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEA 325 (791)
T ss_pred HHHhcc--CceEEEEEecccccCC-HHHh-hcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhh
Confidence 877765 4677777777654332 3333 358999999998877765521 1244444 5899999
Q ss_pred cccC
Q 008605 430 DILF 433 (560)
Q Consensus 430 h~ll 433 (560)
|.+-
T Consensus 326 H~IK 329 (791)
T KOG1002|consen 326 HNIK 329 (791)
T ss_pred cccc
Confidence 9987
No 163
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.41 E-value=0.0021 Score=74.40 Aligned_cols=131 Identities=24% Similarity=0.252 Sum_probs=77.9
Q ss_pred CCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhh
Q 008605 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (560)
Q Consensus 289 ~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l 368 (560)
..+++.|.+|+..+..++-+++.++.|+|||.+. -.++..+... .....+++++||-.-|.++.+..
T Consensus 322 ~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~---------~~~~~v~l~ApTg~AA~~L~e~~--- 388 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEEL---------GGLLPVGLAAPTGRAAKRLGEVT--- 388 (720)
T ss_pred CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHc---------CCCceEEEEeCchHHHHHHHHhc---
Confidence 3689999999999998888999999999999753 2333333221 01145788899987776543321
Q ss_pred hcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCCChHHHHHHHHhh
Q 008605 369 SKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448 (560)
Q Consensus 369 ~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~l~~Il~~ 448 (560)
. ... .+.- +.+... ++.... ...-.....++||||||+++- ...+..+++.
T Consensus 389 -g----~~a------~Tih---~lL~~~-------~~~~~~---~~~~~~~~~~llIvDEaSMvd-----~~~~~~Ll~~ 439 (720)
T TIGR01448 389 -G----LTA------STIH---RLLGYG-------PDTFRH---NHLEDPIDCDLLIVDESSMMD-----TWLALSLLAA 439 (720)
T ss_pred -C----Ccc------ccHH---HHhhcc-------CCccch---hhhhccccCCEEEEeccccCC-----HHHHHHHHHh
Confidence 1 100 0000 001000 000000 000112357899999999874 2355777778
Q ss_pred CCCCCcEEEEecc
Q 008605 449 SPVTAQYLFVTAT 461 (560)
Q Consensus 449 ~~~~~Q~IllSAT 461 (560)
++...++|++-=+
T Consensus 440 ~~~~~rlilvGD~ 452 (720)
T TIGR01448 440 LPDHARLLLVGDT 452 (720)
T ss_pred CCCCCEEEEECcc
Confidence 8888888887654
No 164
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.40 E-value=0.0013 Score=74.47 Aligned_cols=142 Identities=17% Similarity=0.201 Sum_probs=85.3
Q ss_pred hHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhhcC
Q 008605 292 SQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKC 371 (560)
Q Consensus 292 t~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~~ 371 (560)
.++|+.|+-..+..+-++|.+++|+|||.... -++..+.+. ......++++++||..-|..+.+.+.....
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~-~ll~~l~~~-------~~~~~~~i~l~APTgkAA~rL~e~~~~~~~- 224 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTVA-KLLAALIQL-------ADGERCRIRLAAPTGKAAARLTESLGKALR- 224 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHH-HHHHHHHHh-------cCCCCcEEEEECCcHHHHHHHHHHHHhhhh-
Confidence 58999999999988889999999999997632 233333221 011235688889999888887776654321
Q ss_pred CCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHH------HhccccCCCccEEEEccccccCCCCChHHHHHHH
Q 008605 372 GVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLI------KEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445 (560)
Q Consensus 372 ~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll------~~~~~~l~~l~~LViDEah~ll~d~~f~~~l~~I 445 (560)
.+.. . .... .....-..|-.+|+... ..+....-.+++|||||+-++- ...+..+
T Consensus 225 --~~~~-------~-~~~~----~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd-----~~lm~~l 285 (615)
T PRK10875 225 --QLPL-------T-DEQK----KRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD-----LPMMARL 285 (615)
T ss_pred --cccc-------c-hhhh----hcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc-----HHHHHHH
Confidence 1100 0 0000 00111223333333221 1111223356899999997653 4566778
Q ss_pred HhhCCCCCcEEEEecc
Q 008605 446 ISSSPVTAQYLFVTAT 461 (560)
Q Consensus 446 l~~~~~~~Q~IllSAT 461 (560)
++.+++..++|++-=.
T Consensus 286 l~al~~~~rlIlvGD~ 301 (615)
T PRK10875 286 IDALPPHARVIFLGDR 301 (615)
T ss_pred HHhcccCCEEEEecch
Confidence 8888888888887654
No 165
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.38 E-value=0.0011 Score=73.24 Aligned_cols=72 Identities=18% Similarity=0.273 Sum_probs=58.1
Q ss_pred CCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHH
Q 008605 286 QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (560)
Q Consensus 286 ~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l 365 (560)
.|+.+++.-|..|..+++...=.|+.+|.|+|||..-.- |+.++.+. ....+|+++|+.--+.|+.+.+
T Consensus 406 ~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~-IVyhl~~~----------~~~~VLvcApSNiAVDqLaeKI 474 (935)
T KOG1802|consen 406 PNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSAT-IVYHLARQ----------HAGPVLVCAPSNIAVDQLAEKI 474 (935)
T ss_pred CCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHH-HHHHHHHh----------cCCceEEEcccchhHHHHHHHH
Confidence 467788999999999999988899999999999987554 44444332 3556999999999999998887
Q ss_pred Hhh
Q 008605 366 RSL 368 (560)
Q Consensus 366 ~~l 368 (560)
.+.
T Consensus 475 h~t 477 (935)
T KOG1802|consen 475 HKT 477 (935)
T ss_pred Hhc
Confidence 654
No 166
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=97.28 E-value=0.00061 Score=68.58 Aligned_cols=87 Identities=26% Similarity=0.411 Sum_probs=69.1
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCc-chHHHHHHhc-CCCcEEEECHHHHHHHHHhccccCC
Q 008605 342 TSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF-RQKTQLENLQ-EGVDVLIATPGRFMFLIKEGILQLI 419 (560)
Q Consensus 342 ~~~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~-~~~~~~~~l~-~~~~IlV~TP~~L~~ll~~~~~~l~ 419 (560)
....|.+|||+.+---|-++.+.++.+.. .+..|.-++.-. ...++...+. ..++|.||||+||..++..+.+.++
T Consensus 123 ~~gsP~~lvvs~SalRa~dl~R~l~~~~~--k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~ 200 (252)
T PF14617_consen 123 EKGSPHVLVVSSSALRAADLIRALRSFKG--KDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLS 200 (252)
T ss_pred CCCCCEEEEEcchHHHHHHHHHHHHhhcc--CCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcc
Confidence 35678999999998888888888877732 234555555443 6677777776 4689999999999999999999999
Q ss_pred CccEEEEcccc
Q 008605 420 NLRCAILDEVD 430 (560)
Q Consensus 420 ~l~~LViDEah 430 (560)
++.+||||--|
T Consensus 201 ~l~~ivlD~s~ 211 (252)
T PF14617_consen 201 NLKRIVLDWSY 211 (252)
T ss_pred cCeEEEEcCCc
Confidence 99999999865
No 167
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.27 E-value=0.0031 Score=71.23 Aligned_cols=143 Identities=15% Similarity=0.249 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhhcC
Q 008605 292 SQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKC 371 (560)
Q Consensus 292 t~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~~ 371 (560)
..+|+.|+..++..+-+++.++.|+|||... ..++..+.... ......++++++||-.-|..+.+.+.....
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v-~~ll~~l~~~~------~~~~~~~I~l~APTGkAA~rL~e~~~~~~~- 218 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTV-ARLLLALVKQS------PKQGKLRIALAAPTGKAAARLAESLRKAVK- 218 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHH-HHHHHHHHHhc------cccCCCcEEEECCcHHHHHHHHHHHHhhhc-
Confidence 3799999999999888999999999999763 23333332210 001135799999998888777766644321
Q ss_pred CCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHH------hccccCCCccEEEEccccccCCCCChHHHHHHH
Q 008605 372 GVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIK------EGILQLINLRCAILDEVDILFNDEDFEVALQSL 445 (560)
Q Consensus 372 ~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~------~~~~~l~~l~~LViDEah~ll~d~~f~~~l~~I 445 (560)
.+.. . .... ....+-..|-.+++.... ........+++||||||=++- ...+..|
T Consensus 219 --~l~~---~-----~~~~----~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd-----~~l~~~l 279 (586)
T TIGR01447 219 --NLAA---A-----EALI----AALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD-----LPLMAKL 279 (586)
T ss_pred --cccc---c-----hhhh----hccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC-----HHHHHHH
Confidence 1110 0 0000 001122344444432211 111223457899999997653 3467778
Q ss_pred HhhCCCCCcEEEEecc
Q 008605 446 ISSSPVTAQYLFVTAT 461 (560)
Q Consensus 446 l~~~~~~~Q~IllSAT 461 (560)
++.++...++|++-=.
T Consensus 280 l~al~~~~rlIlvGD~ 295 (586)
T TIGR01447 280 LKALPPNTKLILLGDK 295 (586)
T ss_pred HHhcCCCCEEEEECCh
Confidence 8888888888887654
No 168
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.25 E-value=0.0056 Score=60.67 Aligned_cols=151 Identities=19% Similarity=0.274 Sum_probs=93.9
Q ss_pred cccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHc---CCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCC
Q 008605 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVE---GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGS 345 (560)
Q Consensus 269 sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~---g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~ 345 (560)
.|+-+..|.+++-.+.. ++ ..++.|.+....+.+ |.|.+...-+|.|||-+ ++|++..+..+ ..
T Consensus 4 ~w~p~~~P~wLl~E~e~-~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAd----------g~ 70 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIES-NI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALAD----------GS 70 (229)
T ss_pred CCCchhChHHHHHHHHc-Cc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcC----------CC
Confidence 45555566777665543 33 578899998888774 57999999999999976 67888777643 23
Q ss_pred CEEEEEcCCHHHHHHHHHHHHhhhcC--CCCceEEEEeCCcchHH----HHH----HhcCCCcEEEECHHHHHHHHHhc-
Q 008605 346 PRVVILAPTAELASQVLSNCRSLSKC--GVPFRSMVVTGGFRQKT----QLE----NLQEGVDVLIATPGRFMFLIKEG- 414 (560)
Q Consensus 346 ~~aLil~PtreLa~Qi~~~l~~l~~~--~~~i~v~~l~gg~~~~~----~~~----~l~~~~~IlV~TP~~L~~ll~~~- 414 (560)
..+.+++| ++|..|.++.++.-... +..+...-+.-...... ... .....-.|+++||+.++.+.-..
T Consensus 71 ~LvrviVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~l 149 (229)
T PF12340_consen 71 RLVRVIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGL 149 (229)
T ss_pred cEEEEEcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHH
Confidence 35666666 57999999888765431 22222222222222211 111 11234569999999987553211
Q ss_pred ------c-----------ccCCCccEEEEccccccC
Q 008605 415 ------I-----------LQLINLRCAILDEVDILF 433 (560)
Q Consensus 415 ------~-----------~~l~~l~~LViDEah~ll 433 (560)
. -.+.....=|+||+|..+
T Consensus 150 e~l~~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L 185 (229)
T PF12340_consen 150 ERLQDGKPEEARELLKIQKWLDEHSRDILDESDEIL 185 (229)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhcCCeEeECchhcc
Confidence 0 023344557899999877
No 169
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.23 E-value=0.0012 Score=72.52 Aligned_cols=64 Identities=22% Similarity=0.311 Sum_probs=50.2
Q ss_pred CChHHHHHHHHHHHcCCc-EEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHH
Q 008605 290 RPSQIQAMAFPPVVEGKS-CILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (560)
Q Consensus 290 ~pt~iQ~~aip~il~g~d-vlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l 365 (560)
.+.+-|..|+....+.++ .++.+|+|+|||.....-+.+.+.+ +-++|+.+||.+-+.-+.+.+
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~------------~k~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ------------KKRVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc------------CCeEEEEcCchHHHHHHHHHh
Confidence 567789999999888866 6789999999998865555444433 457999999999888887754
No 170
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.21 E-value=0.0028 Score=72.38 Aligned_cols=66 Identities=20% Similarity=0.281 Sum_probs=51.5
Q ss_pred CChHHHHHHHHHHHcC-CcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHh
Q 008605 290 RPSQIQAMAFPPVVEG-KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS 367 (560)
Q Consensus 290 ~pt~iQ~~aip~il~g-~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~ 367 (560)
.++..|.+|+..++.. ..++|.+|+|+|||.... .++..+.. .+.++|+++||..-+.++.+.+..
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~-~ii~~~~~-----------~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLV-ELIRQLVK-----------RGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHH-HHHHHHHH-----------cCCCEEEEcCcHHHHHHHHHHHHh
Confidence 5788999999998876 568899999999996643 33333332 245799999999999998888865
No 171
>PF13245 AAA_19: Part of AAA domain
Probab=97.05 E-value=0.0025 Score=52.28 Aligned_cols=60 Identities=23% Similarity=0.379 Sum_probs=39.9
Q ss_pred HHHHHHcCCc-EEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHH
Q 008605 298 AFPPVVEGKS-CILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (560)
Q Consensus 298 aip~il~g~d-vlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l 365 (560)
++...+.+.. ++|.+|.|||||...+--+...+... ... +.++++++|++..+.++.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~-------~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAAR-------ADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHh-------cCC-CCeEEEECCCHHHHHHHHHHH
Confidence 4443333444 55699999999966444444333211 112 568999999999999998887
No 172
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=97.03 E-value=0.0012 Score=76.92 Aligned_cols=127 Identities=20% Similarity=0.186 Sum_probs=89.5
Q ss_pred CChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhh
Q 008605 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (560)
Q Consensus 290 ~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~ 369 (560)
.|+++|...=-++. +--|..+.||-||||+..+|+.-..+. |.-+-||+-.--||..=.+.+..+.
T Consensus 138 ~~ydVQLiGgivLh--~G~IAEM~TGEGKTLvatlp~yLnAL~------------G~gVHvVTvNDYLA~RDaewm~p~y 203 (1025)
T PRK12900 138 VPYDVQLIGGIVLH--SGKISEMATGEGKTLVSTLPTFLNALT------------GRGVHVVTVNDYLAQRDKEWMNPVF 203 (1025)
T ss_pred cccchHHhhhHHhh--cCCccccCCCCCcchHhHHHHHHHHHc------------CCCcEEEeechHhhhhhHHHHHHHH
Confidence 46667765543443 445789999999999999998766553 2236677777889998888888887
Q ss_pred cCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHH-HHHHhcc------ccCCCccEEEEccccccC
Q 008605 370 KCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFM-FLIKEGI------LQLINLRCAILDEVDILF 433 (560)
Q Consensus 370 ~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~-~ll~~~~------~~l~~l~~LViDEah~ll 433 (560)
.+ .++.|.++..+....... -.-.|||..+|..-+- ++|+.+. .....+.+.||||+|-++
T Consensus 204 ~f-lGLtVg~i~~~~~~~~Rr--~aY~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDSvL 271 (1025)
T PRK12900 204 EF-HGLSVGVILNTMRPEERR--EQYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDSVL 271 (1025)
T ss_pred HH-hCCeeeeeCCCCCHHHHH--HhCCCcceecCCCccccccchhccccchhhhhccCCceEEEechhhhh
Confidence 75 689999887665554433 3346999999986664 4443321 123567899999999765
No 173
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.96 E-value=0.0077 Score=71.53 Aligned_cols=123 Identities=19% Similarity=0.142 Sum_probs=76.0
Q ss_pred CChHHHHHHHHHHHcCCc-EEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhh
Q 008605 290 RPSQIQAMAFPPVVEGKS-CILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (560)
Q Consensus 290 ~pt~iQ~~aip~il~g~d-vlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l 368 (560)
.+++-|.+|+..++.+++ +++.+..|+|||.+ +-.+...+.. .+.+++.++||---+..+.+.
T Consensus 346 ~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~-----------~G~~V~~~ApTGkAA~~L~e~---- 409 (988)
T PRK13889 346 VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA-----------AGYEVRGAALSGIAAENLEGG---- 409 (988)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH-----------cCCeEEEecCcHHHHHHHhhc----
Confidence 689999999999998765 67899999999975 3333333322 256799999998665444321
Q ss_pred hcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCCChHHHHHHHHhh
Q 008605 369 SKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448 (560)
Q Consensus 369 ~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~l~~Il~~ 448 (560)
.++.. .|-.+|+.-...+...+...++|||||+-++. . ..+..|++.
T Consensus 410 ----tGi~a------------------------~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~-~----~~m~~LL~~ 456 (988)
T PRK13889 410 ----SGIAS------------------------RTIASLEHGWGQGRDLLTSRDVLVIDEAGMVG-T----RQLERVLSH 456 (988)
T ss_pred ----cCcch------------------------hhHHHHHhhhcccccccccCcEEEEECcccCC-H----HHHHHHHHh
Confidence 11111 02222221112223345677899999998664 2 344555554
Q ss_pred C-CCCCcEEEEecc
Q 008605 449 S-PVTAQYLFVTAT 461 (560)
Q Consensus 449 ~-~~~~Q~IllSAT 461 (560)
. +...++|++-=+
T Consensus 457 a~~~garvVLVGD~ 470 (988)
T PRK13889 457 AADAGAKVVLVGDP 470 (988)
T ss_pred hhhCCCEEEEECCH
Confidence 3 456777777654
No 174
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.92 E-value=0.015 Score=67.76 Aligned_cols=121 Identities=17% Similarity=0.181 Sum_probs=72.3
Q ss_pred CChHHHHHHHHHHHcC-CcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhh
Q 008605 290 RPSQIQAMAFPPVVEG-KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (560)
Q Consensus 290 ~pt~iQ~~aip~il~g-~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l 368 (560)
.+++-|.+|+..++.+ +-+++.++.|+|||...- .++..+.. .+..+++++||---+..+.+.
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~-~i~~~~~~-----------~g~~V~~~ApTg~Aa~~L~~~---- 415 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLK-AAREAWEA-----------AGYRVIGAALSGKAAEGLQAE---- 415 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHH-HHHHHHHh-----------CCCeEEEEeCcHHHHHHHHhc----
Confidence 5899999999998875 457899999999996532 23333322 256799999997666554321
Q ss_pred hcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCCChHHHHHHHHhh
Q 008605 369 SKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448 (560)
Q Consensus 369 ~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~l~~Il~~ 448 (560)
.++... |-.+++.-+......+...++|||||+-++- . ..+..|+..
T Consensus 416 ----~g~~a~------------------------Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~-~----~~~~~Ll~~ 462 (744)
T TIGR02768 416 ----SGIESR------------------------TLASLEYAWANGRDLLSDKDVLVIDEAGMVG-S----RQMARVLKE 462 (744)
T ss_pred ----cCCcee------------------------eHHHHHhhhccCcccCCCCcEEEEECcccCC-H----HHHHHHHHH
Confidence 111111 1122211112223345678899999998775 2 223444442
Q ss_pred C-CCCCcEEEEe
Q 008605 449 S-PVTAQYLFVT 459 (560)
Q Consensus 449 ~-~~~~Q~IllS 459 (560)
. ....++|++-
T Consensus 463 ~~~~~~kliLVG 474 (744)
T TIGR02768 463 AEEAGAKVVLVG 474 (744)
T ss_pred HHhcCCEEEEEC
Confidence 2 3466677665
No 175
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=96.90 E-value=0.0083 Score=68.63 Aligned_cols=79 Identities=19% Similarity=0.307 Sum_probs=51.5
Q ss_pred CChHHHHHHHHHHH----cCCcEEEEcCCCCcchhhcHHHHHHHHHHHH---h------hc-----c-CC----------
Q 008605 290 RPSQIQAMAFPPVV----EGKSCILADQSGSGKTLAYLLPVIQRLRQEE---L------QG-----L-SK---------- 340 (560)
Q Consensus 290 ~pt~iQ~~aip~il----~g~dvlv~apTGSGKTla~llpil~~l~~~~---~------~~-----~-~~---------- 340 (560)
.|++.|...+..++ ...+.++.+|||+|||++.+-..|....... . .. . +.
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 67888987776655 4578999999999999987766554433211 0 00 0 00
Q ss_pred -CC----CCCCEEEEEcCCHHHHHHHHHHHHhh
Q 008605 341 -ST----SGSPRVVILAPTAELASQVLSNCRSL 368 (560)
Q Consensus 341 -~~----~~~~~aLil~PtreLa~Qi~~~l~~l 368 (560)
.. -..|+++|-.-|-.-..|+.+++++.
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT 133 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRT 133 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhc
Confidence 00 12567777777777777888887765
No 176
>PRK08181 transposase; Validated
Probab=96.78 E-value=0.014 Score=59.62 Aligned_cols=21 Identities=24% Similarity=0.422 Sum_probs=17.5
Q ss_pred HHcCCcEEEEcCCCCcchhhc
Q 008605 302 VVEGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 302 il~g~dvlv~apTGSGKTla~ 322 (560)
+..++++++.+|+|+|||...
T Consensus 103 ~~~~~nlll~Gp~GtGKTHLa 123 (269)
T PRK08181 103 LAKGANLLLFGPPGGGKSHLA 123 (269)
T ss_pred HhcCceEEEEecCCCcHHHHH
Confidence 346789999999999999643
No 177
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.77 E-value=0.0021 Score=57.25 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=13.0
Q ss_pred cCCcEEEEcCCCCcchhhcH
Q 008605 304 EGKSCILADQSGSGKTLAYL 323 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~l 323 (560)
.++.+++.+++|+|||....
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~ 22 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIK 22 (131)
T ss_dssp ----EEEEE-TTSSHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHH
Confidence 34568999999999998644
No 178
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=96.73 E-value=0.0028 Score=74.14 Aligned_cols=127 Identities=20% Similarity=0.178 Sum_probs=86.9
Q ss_pred CChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhh
Q 008605 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (560)
Q Consensus 290 ~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~ 369 (560)
.|+++|... .+.-.+--|..+.||-||||+..+|+.-..+.. .-+-||+..--||..=.+.+..+.
T Consensus 169 ~~yDVQliG--givLh~G~IAEM~TGEGKTLvAtlp~yLnAL~G------------kgVHvVTVNDYLA~RDaewmgply 234 (1112)
T PRK12901 169 VHYDVQLIG--GVVLHQGKIAEMATGEGKTLVATLPVYLNALTG------------NGVHVVTVNDYLAKRDSEWMGPLY 234 (1112)
T ss_pred cccchHHhh--hhhhcCCceeeecCCCCchhHHHHHHHHHHHcC------------CCcEEEEechhhhhccHHHHHHHH
Confidence 456666554 333345568899999999999999988666542 236677778889988888887777
Q ss_pred cCCCCceEEEEeC-CcchHHHHHHhcCCCcEEEECHHHHH-HHHHhcc------ccCCCccEEEEccccccC
Q 008605 370 KCGVPFRSMVVTG-GFRQKTQLENLQEGVDVLIATPGRFM-FLIKEGI------LQLINLRCAILDEVDILF 433 (560)
Q Consensus 370 ~~~~~i~v~~l~g-g~~~~~~~~~l~~~~~IlV~TP~~L~-~ll~~~~------~~l~~l~~LViDEah~ll 433 (560)
.+ .++.|.++.. +..... ++-.-.|||..+|..-+- ++|+.+. .....+.+.||||+|-++
T Consensus 235 ~f-LGLsvg~i~~~~~~~~~--rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSIL 303 (1112)
T PRK12901 235 EF-HGLSVDCIDKHQPNSEA--RRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVL 303 (1112)
T ss_pred HH-hCCceeecCCCCCCHHH--HHHhCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhhh
Confidence 75 6788887765 323332 233345999999986664 4443321 124457899999999765
No 179
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=96.71 E-value=0.013 Score=68.92 Aligned_cols=159 Identities=16% Similarity=0.181 Sum_probs=98.6
Q ss_pred ChHHHHHHHHHHH--c--CCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Q 008605 291 PSQIQAMAFPPVV--E--GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (560)
Q Consensus 291 pt~iQ~~aip~il--~--g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~ 366 (560)
++.+|++.+..+. + +-+-|+|--.|-|||+-.+.-+..-....+. ........-.|||||. .|+--...++.
T Consensus 976 LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s---~~~e~~~~PSLIVCPs-TLtGHW~~E~~ 1051 (1549)
T KOG0392|consen 976 LRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRS---ESSEFNRLPSLIVCPS-TLTGHWKSEVK 1051 (1549)
T ss_pred HHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcc---cchhhccCCeEEECCc-hhhhHHHHHHH
Confidence 4668888876543 2 2378999999999999754443333322210 0011122227999997 58888888888
Q ss_pred hhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCCChHHHHHHHH
Q 008605 367 SLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446 (560)
Q Consensus 367 ~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~l~~Il 446 (560)
+++. .+++....|+...+...+.-.+..+|+|++++.+..-+.. +.-...-|+|+||-|.|-+ -...+....
T Consensus 1052 kf~p---fL~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~--l~~~~wNYcVLDEGHVikN---~ktkl~kav 1123 (1549)
T KOG0392|consen 1052 KFFP---FLKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY--LIKIDWNYCVLDEGHVIKN---SKTKLTKAV 1123 (1549)
T ss_pred Hhcc---hhhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH--HHhcccceEEecCcceecc---hHHHHHHHH
Confidence 8864 3788888888776665555556689999999887522111 0011345899999999973 222333333
Q ss_pred hhCCCCCcEEEEeccC
Q 008605 447 SSSPVTAQYLFVTATL 462 (560)
Q Consensus 447 ~~~~~~~Q~IllSATl 462 (560)
+.+..+.+ +++|.|.
T Consensus 1124 kqL~a~hR-LILSGTP 1138 (1549)
T KOG0392|consen 1124 KQLRANHR-LILSGTP 1138 (1549)
T ss_pred HHHhhcce-EEeeCCC
Confidence 44443444 5568886
No 180
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=96.69 E-value=0.0071 Score=71.18 Aligned_cols=152 Identities=18% Similarity=0.257 Sum_probs=93.4
Q ss_pred CCChHHHHHHHHHHH----cCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHH
Q 008605 289 LRPSQIQAMAFPPVV----EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (560)
Q Consensus 289 ~~pt~iQ~~aip~il----~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~ 364 (560)
..++.+|.+.++.++ .+.++|+.-..|-|||+-- +..|..+.... ...|| .|||+|.-.+. ...+.
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqt-i~fl~~l~~~~-------~~~gp-flvvvplst~~-~W~~e 438 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQT-ITFLSYLFHSL-------QIHGP-FLVVVPLSTIT-AWERE 438 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHH-HHHHHHHHHhh-------hccCC-eEEEeehhhhH-HHHHH
Confidence 578889998887765 6789999999999999642 22233332221 12344 46677765543 24445
Q ss_pred HHhhhcCCCCceEEEEeCCcchHHHHHHhc----C-----CCcEEEECHHHHHHHHHhccccCC--CccEEEEccccccC
Q 008605 365 CRSLSKCGVPFRSMVVTGGFRQKTQLENLQ----E-----GVDVLIATPGRFMFLIKEGILQLI--NLRCAILDEVDILF 433 (560)
Q Consensus 365 l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~----~-----~~~IlV~TP~~L~~ll~~~~~~l~--~l~~LViDEah~ll 433 (560)
+..+. .+++++++|.......++... . ..++|++|.+.++.-- -.|+ .-.+++|||||+|-
T Consensus 439 f~~w~----~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk----~~L~~i~w~~~~vDeahrLk 510 (1373)
T KOG0384|consen 439 FETWT----DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDK----AELSKIPWRYLLVDEAHRLK 510 (1373)
T ss_pred HHHHh----hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccH----hhhccCCcceeeecHHhhcC
Confidence 55543 678899999887666555442 1 3789999998875321 1223 34689999999997
Q ss_pred CCCChHHHHHHHHhhCCCCCcEEEEeccC
Q 008605 434 NDEDFEVALQSLISSSPVTAQYLFVTATL 462 (560)
Q Consensus 434 ~d~~f~~~l~~Il~~~~~~~Q~IllSATl 462 (560)
++ -...+.. +..+..+. -+++|.|.
T Consensus 511 N~--~~~l~~~-l~~f~~~~-rllitgTP 535 (1373)
T KOG0384|consen 511 ND--ESKLYES-LNQFKMNH-RLLITGTP 535 (1373)
T ss_pred ch--HHHHHHH-HHHhcccc-eeeecCCC
Confidence 32 2222233 33333333 35567775
No 181
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.66 E-value=0.0085 Score=61.39 Aligned_cols=57 Identities=18% Similarity=0.235 Sum_probs=41.0
Q ss_pred cccCCCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccC---CHHHHHHHHHh
Q 008605 415 ILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATL---PVEIYNKLVEV 473 (560)
Q Consensus 415 ~~~l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATl---p~~v~~~l~~~ 473 (560)
......++.+|+||||.|- ..-...+++.++..+....|++...-+ +..+.....++
T Consensus 124 ~~~~~~fKiiIlDEcdsmt--sdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~Kf 183 (346)
T KOG0989|consen 124 GYPCPPFKIIILDECDSMT--SDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKF 183 (346)
T ss_pred CCCCCcceEEEEechhhhh--HHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHh
Confidence 3456667999999999997 456677888888888888888887764 44444444433
No 182
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.61 E-value=0.074 Score=57.93 Aligned_cols=70 Identities=20% Similarity=0.245 Sum_probs=42.8
Q ss_pred ECHHHHHHHHHhccccCCCccEEEEccccccCCCCChHHHHHHHHhhC-CCCCcEEEEeccCCHHHHHHHHHhCC
Q 008605 402 ATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS-PVTAQYLFVTATLPVEIYNKLVEVFP 475 (560)
Q Consensus 402 ~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~-~~~~Q~IllSATlp~~v~~~l~~~~~ 475 (560)
.++..+...+.. +...++||||.+-+...+......+..++... .+...++++|||........+...|.
T Consensus 285 ~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~ 355 (424)
T PRK05703 285 YDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFS 355 (424)
T ss_pred CCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhC
Confidence 345555555443 33678999999976553444555666676622 23345888999987655555555553
No 183
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.59 E-value=0.04 Score=59.16 Aligned_cols=68 Identities=12% Similarity=0.055 Sum_probs=40.3
Q ss_pred CHHHHHHHHHhccccCCCccEEEEccccccCCCCChHHHHHHHHhhCCCC-CcEEEEeccCCHHHHHHHHHhC
Q 008605 403 TPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVT-AQYLFVTATLPVEIYNKLVEVF 474 (560)
Q Consensus 403 TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~-~Q~IllSATlp~~v~~~l~~~~ 474 (560)
++..+...+.. +.+.++|+||++.++..+......+..++...... --++++|||........+...+
T Consensus 241 ~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~ 309 (388)
T PRK12723 241 SFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQF 309 (388)
T ss_pred cHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHh
Confidence 34444444432 35788999999998863322334555566555433 4678999999755444333333
No 184
>PRK06526 transposase; Provisional
Probab=96.58 E-value=0.0082 Score=60.83 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=18.1
Q ss_pred HHcCCcEEEEcCCCCcchhhcH
Q 008605 302 VVEGKSCILADQSGSGKTLAYL 323 (560)
Q Consensus 302 il~g~dvlv~apTGSGKTla~l 323 (560)
+..+.++++++|+|+|||....
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~ 116 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAI 116 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHH
Confidence 4467899999999999997543
No 185
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.55 E-value=0.0051 Score=67.65 Aligned_cols=144 Identities=14% Similarity=0.202 Sum_probs=75.1
Q ss_pred EEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchH--
Q 008605 310 LADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK-- 387 (560)
Q Consensus 310 v~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~-- 387 (560)
..+.||||||++..--|+....+. ...-|+.|.....+......+..-.....-+.-...+++....
T Consensus 2 f~matgsgkt~~ma~lil~~y~kg-----------yr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ik 70 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKG-----------YRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIK 70 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhc-----------hhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeee
Confidence 457899999998777676655432 2246777766655555443332110000000001111111110
Q ss_pred --HHHHHhcCCCcEEEECHHHHHHHHHh---ccc---cCCCccEE-EEccccccCCC------------CChHHHHHHHH
Q 008605 388 --TQLENLQEGVDVLIATPGRFMFLIKE---GIL---QLINLRCA-ILDEVDILFND------------EDFEVALQSLI 446 (560)
Q Consensus 388 --~~~~~l~~~~~IlV~TP~~L~~ll~~---~~~---~l~~l~~L-ViDEah~ll~d------------~~f~~~l~~Il 446 (560)
........+..|.++|...|...+.+ +.+ ++.+.++| +-||||++-.. ..|...+...+
T Consensus 71 kvn~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~ 150 (812)
T COG3421 71 KVNNFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLAL 150 (812)
T ss_pred eecccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHH
Confidence 00011234578999999999876644 233 34455554 55999998631 12333333223
Q ss_pred hhCCCCCcEEEEeccCCHH
Q 008605 447 SSSPVTAQYLFVTATLPVE 465 (560)
Q Consensus 447 ~~~~~~~Q~IllSATlp~~ 465 (560)
+. .++.-++.+|||.|.+
T Consensus 151 ~~-nkd~~~lef~at~~k~ 168 (812)
T COG3421 151 EQ-NKDNLLLEFSATIPKE 168 (812)
T ss_pred hc-CCCceeehhhhcCCcc
Confidence 32 2355577899999943
No 186
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.55 E-value=0.021 Score=59.91 Aligned_cols=143 Identities=14% Similarity=0.201 Sum_probs=85.7
Q ss_pred CCCCCChHHHHHHHHHHHcCC-c-EEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHH-
Q 008605 286 QNFLRPSQIQAMAFPPVVEGK-S-CILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVL- 362 (560)
Q Consensus 286 ~g~~~pt~iQ~~aip~il~g~-d-vlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~- 362 (560)
+|+.--+..|..|+.+++... + |.+.++.|||||+.++.+.+......+. ..+.|+.=|+..+-+++-
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~---------y~KiiVtRp~vpvG~dIGf 294 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKR---------YRKIIVTRPTVPVGEDIGF 294 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhh---------hceEEEecCCcCcccccCc
Confidence 477777788999999988654 3 5678999999999999988888776532 345777667765543320
Q ss_pred ------HHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCC----------ccEEEE
Q 008605 363 ------SNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLIN----------LRCAIL 426 (560)
Q Consensus 363 ------~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~----------l~~LVi 426 (560)
+.+..+.+ ...+..+.+....+ ++-+.+..++.+..+.+.. =.++||
T Consensus 295 LPG~eEeKm~PWmq--------------~i~DnLE~L~~~~~---~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiII 357 (436)
T COG1875 295 LPGTEEEKMGPWMQ--------------AIFDNLEVLFSPNE---PGDRALEEILSRGRIEVEALTYIRGRSLPDSFIII 357 (436)
T ss_pred CCCchhhhccchHH--------------HHHhHHHHHhcccc---cchHHHHHHHhccceeeeeeeeecccccccceEEE
Confidence 11111110 00011111111000 1233444444444332221 147999
Q ss_pred ccccccCCCCChHHHHHHHHhhCCCCCcEEEEe
Q 008605 427 DEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459 (560)
Q Consensus 427 DEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllS 459 (560)
|||..+- ..+++.|+.+......++++.
T Consensus 358 DEaQNLT-----pheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 358 DEAQNLT-----PHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred ehhhccC-----HHHHHHHHHhccCCCEEEEcC
Confidence 9998765 467899999998888887753
No 187
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.50 E-value=0.0061 Score=62.37 Aligned_cols=123 Identities=19% Similarity=0.166 Sum_probs=72.0
Q ss_pred ChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhhc
Q 008605 291 PSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK 370 (560)
Q Consensus 291 pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~ 370 (560)
+|+-|.+++.. ...+++|.|..|||||.+.+--++..+.... ....++|+|++|+..+.++..++.....
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~--------~~~~~Il~lTft~~aa~e~~~ri~~~l~ 70 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG--------VPPERILVLTFTNAAAQEMRERIRELLE 70 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS--------STGGGEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc--------CChHHheecccCHHHHHHHHHHHHHhcC
Confidence 46789999877 6789999999999999986655555444321 2234699999999999999999887643
Q ss_pred CCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHH-HHhccccCC-CccEEEEcccc
Q 008605 371 CGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFL-IKEGILQLI-NLRCAILDEVD 430 (560)
Q Consensus 371 ~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~l-l~~~~~~l~-~l~~LViDEah 430 (560)
... .. .............-..+.|+|-..+..- ++....... .-.+-++|+..
T Consensus 71 ~~~-~~------~~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 71 EEQ-QE------SSDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp HCC-HC------CTT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred ccc-cc------ccccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 110 00 0000011111112246888888877653 333221111 12356666665
No 188
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.50 E-value=0.031 Score=49.48 Aligned_cols=17 Identities=35% Similarity=0.468 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCCcchhh
Q 008605 305 GKSCILADQSGSGKTLA 321 (560)
Q Consensus 305 g~dvlv~apTGSGKTla 321 (560)
++.+++.+|+|+|||..
T Consensus 19 ~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL 35 (151)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 67899999999999964
No 189
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.48 E-value=0.05 Score=65.27 Aligned_cols=137 Identities=18% Similarity=0.171 Sum_probs=80.9
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHHcC-CcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcC
Q 008605 275 CSDYMIESLKRQNFLRPSQIQAMAFPPVVEG-KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAP 353 (560)
Q Consensus 275 L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g-~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~P 353 (560)
+++..+......+ ..+++-|.+|+..+..+ +-+++.++.|+|||.+. -.+...+.. .+.+++.++|
T Consensus 367 v~~~~l~a~~~~~-~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l-~~~~~~~e~-----------~G~~V~g~Ap 433 (1102)
T PRK13826 367 VREAVLAATFARH-ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMM-KAAREAWEA-----------AGYRVVGGAL 433 (1102)
T ss_pred CCHHHHHHHHhcC-CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHH-HHHHHHHHH-----------cCCeEEEEcC
Confidence 4455555443333 36899999999988653 45788999999999653 233333321 3567899999
Q ss_pred CHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccC
Q 008605 354 TAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILF 433 (560)
Q Consensus 354 treLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll 433 (560)
|-.-+..+.+.. ++... |-.+++.-...+...+..-.+|||||+-++.
T Consensus 434 TgkAA~~L~e~~--------Gi~a~------------------------TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~ 481 (1102)
T PRK13826 434 AGKAAEGLEKEA--------GIQSR------------------------TLSSWELRWNQGRDQLDNKTVFVLDEAGMVA 481 (1102)
T ss_pred cHHHHHHHHHhh--------CCCee------------------------eHHHHHhhhccCccCCCCCcEEEEECcccCC
Confidence 977665543221 12211 1111111111122345667799999998765
Q ss_pred CCCChHHHHHHHHhhCC-CCCcEEEEecc
Q 008605 434 NDEDFEVALQSLISSSP-VTAQYLFVTAT 461 (560)
Q Consensus 434 ~d~~f~~~l~~Il~~~~-~~~Q~IllSAT 461 (560)
. ..+..+++..+ ...++|++.=+
T Consensus 482 -~----~~m~~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 482 -S----RQMALFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred -H----HHHHHHHHHHHhcCCEEEEECCH
Confidence 2 34555565554 46777777654
No 190
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=96.34 E-value=0.019 Score=64.19 Aligned_cols=151 Identities=21% Similarity=0.293 Sum_probs=98.1
Q ss_pred ChHHHHHHHHHHH----cCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Q 008605 291 PSQIQAMAFPPVV----EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (560)
Q Consensus 291 pt~iQ~~aip~il----~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~ 366 (560)
+..+|...+..+. .|-|-|+.-..|-|||.-. +.++.++.+.. .-.|| -|||+|.-.| .+...
T Consensus 568 LKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQs-isvlAhLaE~~-------nIwGP-FLVVtpaStL----~NWaq 634 (1185)
T KOG0388|consen 568 LKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQS-ISVLAHLAETH-------NIWGP-FLVVTPASTL----HNWAQ 634 (1185)
T ss_pred hHHHhhccHHHHHHHHHccccceehhhhccchhHHH-HHHHHHHHHhc-------cCCCc-eEEeehHHHH----hHHHH
Confidence 3456777765543 5778899999999999764 56666666542 22344 4677776554 33444
Q ss_pred hhhcCCCCceEEEEeCCcchHHHHHHh---------cCCCcEEEECHHHHH---HHHHhccccCCCccEEEEccccccCC
Q 008605 367 SLSKCGVPFRSMVVTGGFRQKTQLENL---------QEGVDVLIATPGRFM---FLIKEGILQLINLRCAILDEVDILFN 434 (560)
Q Consensus 367 ~l~~~~~~i~v~~l~gg~~~~~~~~~l---------~~~~~IlV~TP~~L~---~ll~~~~~~l~~l~~LViDEah~ll~ 434 (560)
++..+.+.+++.-+.|+.......++. ..+.||+|+|...+. .+++. -.-.|.|+|||..+-
T Consensus 635 EisrFlP~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDeky~qk-----vKWQYMILDEAQAIK- 708 (1185)
T KOG0388|consen 635 EISRFLPSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQK-----VKWQYMILDEAQAIK- 708 (1185)
T ss_pred HHHHhCccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHHHHHh-----hhhhheehhHHHHhh-
Confidence 555555789999999998766655552 346899999987664 22222 124589999999986
Q ss_pred CCChHHHHHHHHhhCCCCCcEEEEeccCC
Q 008605 435 DEDFEVALQSLISSSPVTAQYLFVTATLP 463 (560)
Q Consensus 435 d~~f~~~l~~Il~~~~~~~Q~IllSATlp 463 (560)
..-..-.+.++..- .+-.++++.|.-
T Consensus 709 -SSsS~RWKtLLsF~--cRNRLLLTGTPI 734 (1185)
T KOG0388|consen 709 -SSSSSRWKTLLSFK--CRNRLLLTGTPI 734 (1185)
T ss_pred -hhhhhHHHHHhhhh--ccceeeecCCcc
Confidence 34444455555542 223578888863
No 191
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.33 E-value=0.029 Score=59.82 Aligned_cols=53 Identities=17% Similarity=0.235 Sum_probs=31.7
Q ss_pred CCCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHH
Q 008605 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKL 470 (560)
Q Consensus 418 l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l 470 (560)
+.+.++|+||.+-+...+......+..+.........++++|||...+....+
T Consensus 213 l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~ev 265 (374)
T PRK14722 213 LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEV 265 (374)
T ss_pred hcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHH
Confidence 34568899999976542333444555443333333458889999865554433
No 192
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=96.29 E-value=0.0047 Score=67.18 Aligned_cols=65 Identities=32% Similarity=0.455 Sum_probs=48.9
Q ss_pred CChHHHHHHHHHHHcC-----CcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHH
Q 008605 290 RPSQIQAMAFPPVVEG-----KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (560)
Q Consensus 290 ~pt~iQ~~aip~il~g-----~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~ 364 (560)
.|+--|-+||..+..| +.-.+.+.||||||+... -++..+. .-+||++|.+.||-|++.+
T Consensus 12 ~PaGDQP~AI~~Lv~gi~~g~~~QtLLGvTGSGKTfT~A-nVI~~~~--------------rPtLV~AhNKTLAaQLy~E 76 (663)
T COG0556 12 KPAGDQPEAIAELVEGIENGLKHQTLLGVTGSGKTFTMA-NVIAKVQ--------------RPTLVLAHNKTLAAQLYSE 76 (663)
T ss_pred CCCCCcHHHHHHHHHHHhcCceeeEEeeeccCCchhHHH-HHHHHhC--------------CCeEEEecchhHHHHHHHH
Confidence 5666788888776644 467788999999998633 2333332 1299999999999999999
Q ss_pred HHhhh
Q 008605 365 CRSLS 369 (560)
Q Consensus 365 l~~l~ 369 (560)
++.++
T Consensus 77 fk~fF 81 (663)
T COG0556 77 FKEFF 81 (663)
T ss_pred HHHhC
Confidence 99985
No 193
>PRK05642 DNA replication initiation factor; Validated
Probab=96.20 E-value=0.018 Score=57.51 Aligned_cols=45 Identities=22% Similarity=0.334 Sum_probs=27.9
Q ss_pred CccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCH
Q 008605 420 NLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPV 464 (560)
Q Consensus 420 ~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~ 464 (560)
.+++||||++|.+.....+...+-.++..+......++++++.++
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 557899999998863444555566666544333334556666544
No 194
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=96.14 E-value=0.017 Score=66.13 Aligned_cols=147 Identities=18% Similarity=0.271 Sum_probs=89.7
Q ss_pred HHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhh-----hc-C
Q 008605 298 AFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL-----SK-C 371 (560)
Q Consensus 298 aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l-----~~-~ 371 (560)
.+.++....-+++-+.||+|||.-+.-.+|..+.++. ......+.+--|+|-.+.-+++.+..- +. .
T Consensus 386 i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns-------~g~~~na~v~qprrisaisiaerva~er~e~~g~tv 458 (1282)
T KOG0921|consen 386 ILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENS-------NGASFNAVVSQPRRISAISLAERVANERGEEVGETC 458 (1282)
T ss_pred HHHHHhcCceeeEeecccccchhHHHHHHHHHHhhcc-------ccccccceeccccccchHHHHHHHHHhhHHhhcccc
Confidence 3444555556888999999999999888888887652 233445666678888777776655321 11 0
Q ss_pred CCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCCChHHHHHHHHhhCCC
Q 008605 372 GVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPV 451 (560)
Q Consensus 372 ~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~ 451 (560)
+..++-. +..+. .---|+.+|-+-++..+... +..+.++|+||.|..-.+..|...+.+=+..+-.
T Consensus 459 gy~vRf~---Sa~pr--------pyg~i~fctvgvllr~~e~g---lrg~sh~i~deiherdv~~dfll~~lr~m~~ty~ 524 (1282)
T KOG0921|consen 459 GYNVRFD---SATPR--------PYGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHERDVDTDFVLIVLREMISTYR 524 (1282)
T ss_pred ccccccc---ccccc--------cccceeeeccchhhhhhhhc---ccccccccchhhhhhccchHHHHHHHHhhhccch
Confidence 0111100 00110 11358999999998888765 4467899999999765344454444433333334
Q ss_pred CCcEEEEeccCCHH
Q 008605 452 TAQYLFVTATLPVE 465 (560)
Q Consensus 452 ~~Q~IllSATlp~~ 465 (560)
....+++|||+..+
T Consensus 525 dl~v~lmsatIdTd 538 (1282)
T KOG0921|consen 525 DLRVVLMSATIDTD 538 (1282)
T ss_pred hhhhhhhhcccchh
Confidence 45556666666544
No 195
>PRK06893 DNA replication initiation factor; Validated
Probab=96.12 E-value=0.019 Score=57.10 Aligned_cols=47 Identities=17% Similarity=0.296 Sum_probs=31.1
Q ss_pred CCccEEEEccccccCCCCChHHHHHHHHhhCC-CCCcEEEEeccCCHH
Q 008605 419 INLRCAILDEVDILFNDEDFEVALQSLISSSP-VTAQYLFVTATLPVE 465 (560)
Q Consensus 419 ~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~-~~~Q~IllSATlp~~ 465 (560)
.++++|||||+|.+..+..+...+-.++.... .+.+++++|++.++.
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 46789999999998744445555555554443 345677888887554
No 196
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=96.11 E-value=0.0056 Score=66.80 Aligned_cols=95 Identities=21% Similarity=0.225 Sum_probs=62.8
Q ss_pred EEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchH
Q 008605 308 CILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387 (560)
Q Consensus 308 vlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~ 387 (560)
++-++||.||||.- +++++.+.+ .++|.-|.|-||.++++.+.+. ++.+-+++|.....
T Consensus 194 i~H~GPTNSGKTy~----ALqrl~~ak------------sGvycGPLrLLA~EV~~r~na~-----gipCdL~TGeE~~~ 252 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYR----ALQRLKSAK------------SGVYCGPLRLLAHEVYDRLNAL-----GIPCDLLTGEERRF 252 (700)
T ss_pred EEEeCCCCCchhHH----HHHHHhhhc------------cceecchHHHHHHHHHHHhhhc-----CCCccccccceeee
Confidence 55588999999975 567765532 4899999999999999999876 45666777765433
Q ss_pred HHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccC
Q 008605 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILF 433 (560)
Q Consensus 388 ~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll 433 (560)
..-. .+.++.+=||-+.. ..-..+++.||||+++|.
T Consensus 253 ~~~~--~~~a~hvScTVEM~--------sv~~~yeVAViDEIQmm~ 288 (700)
T KOG0953|consen 253 VLDN--GNPAQHVSCTVEMV--------SVNTPYEVAVIDEIQMMR 288 (700)
T ss_pred cCCC--CCcccceEEEEEEe--------ecCCceEEEEehhHHhhc
Confidence 2111 12255666665432 011235677788887776
No 197
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.04 E-value=0.026 Score=60.22 Aligned_cols=59 Identities=25% Similarity=0.351 Sum_probs=41.9
Q ss_pred ChHHHHHHHHHH------HcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHH
Q 008605 291 PSQIQAMAFPPV------VEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQV 361 (560)
Q Consensus 291 pt~iQ~~aip~i------l~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi 361 (560)
+++-|++++..+ ..+.++++.++-|+|||..+ -.+..... ..+..+++++||-.-|..+
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~--~~i~~~~~----------~~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLI--KAIIDYLR----------SRGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHH--HHHHHHhc----------cccceEEEecchHHHHHhc
Confidence 567799998887 67789999999999999653 23322221 2345788999997665554
No 198
>PRK06921 hypothetical protein; Provisional
Probab=96.01 E-value=0.068 Score=54.53 Aligned_cols=27 Identities=33% Similarity=0.324 Sum_probs=19.0
Q ss_pred cCCcEEEEcCCCCcchhhcHHHHHHHHH
Q 008605 304 EGKSCILADQSGSGKTLAYLLPVIQRLR 331 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~llpil~~l~ 331 (560)
.+.++++.+++|+|||... ..+...+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa-~aia~~l~ 142 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLL-TAAANELM 142 (266)
T ss_pred CCCeEEEECCCCCcHHHHH-HHHHHHHh
Confidence 3578999999999999643 33444443
No 199
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=96.00 E-value=0.024 Score=65.62 Aligned_cols=128 Identities=16% Similarity=0.217 Sum_probs=78.3
Q ss_pred CChHHHHHHHHHHHcCCc-EEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhh
Q 008605 290 RPSQIQAMAFPPVVEGKS-CILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (560)
Q Consensus 290 ~pt~iQ~~aip~il~g~d-vlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l 368 (560)
.++.-|++|+-.++..+| .+|.+-+|+|||..... ++..+. ..+.++|+.+-|..-+.-+.-.++.+
T Consensus 669 ~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~-LIkiL~-----------~~gkkVLLtsyThsAVDNILiKL~~~ 736 (1100)
T KOG1805|consen 669 RLNNDQRQALLKALAAEDYALILGMPGTGKTTTISL-LIKILV-----------ALGKKVLLTSYTHSAVDNILIKLKGF 736 (1100)
T ss_pred hcCHHHHHHHHHHHhccchheeecCCCCCchhhHHH-HHHHHH-----------HcCCeEEEEehhhHHHHHHHHHHhcc
Confidence 678889999999988887 78899999999976433 222222 13557888888887766666555544
Q ss_pred hcC----C------CCceEEEEeCCcc--hHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccC
Q 008605 369 SKC----G------VPFRSMVVTGGFR--QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILF 433 (560)
Q Consensus 369 ~~~----~------~~i~v~~l~gg~~--~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll 433 (560)
..+ | ..++-.+++.+.+ ..+..+.......|+.+|--.+.+.+ +....+++.|||||-++.
T Consensus 737 ~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~pl----f~~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 737 GIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPL----FVNRQFDYCIIDEASQIL 809 (1100)
T ss_pred CcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchh----hhccccCEEEEccccccc
Confidence 221 0 0011111122221 12233344456889999854443322 234468999999999775
No 200
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.00 E-value=0.59 Score=60.04 Aligned_cols=209 Identities=12% Similarity=0.062 Sum_probs=111.6
Q ss_pred CChHHHHHHHHHHHcCC--cEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHh
Q 008605 290 RPSQIQAMAFPPVVEGK--SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS 367 (560)
Q Consensus 290 ~pt~iQ~~aip~il~g~--dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~ 367 (560)
.+++-|.+|+..++... =.+|.++.|+|||.+. -.++. +.+. .+.+++.++||-.-+.++.+....
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l-~~l~~-~~~~----------~G~~V~~lAPTgrAA~~L~e~~g~ 496 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIA-QLLLH-LASE----------QGYEIQIITAGSLSAQELRQKIPR 496 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHH-HHHHH-HHHh----------cCCeEEEEeCCHHHHHHHHHHhcc
Confidence 57899999999988764 4788999999999652 23333 3222 356799999998776665544321
Q ss_pred hhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCCChHHHHHHHHh
Q 008605 368 LSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447 (560)
Q Consensus 368 l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~l~~Il~ 447 (560)
... +.-.....+.. ..-..|...++ .....+..-++||||||-++. . ..+..|++
T Consensus 497 ~A~--------------Ti~~~l~~l~~--~~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~-~----~~~~~Ll~ 551 (1960)
T TIGR02760 497 LAS--------------TFITWVKNLFN--DDQDHTVQGLL----DKSSPFSNKDIFVVDEANKLS-N----NELLKLID 551 (1960)
T ss_pred hhh--------------hHHHHHHhhcc--cccchhHHHhh----cccCCCCCCCEEEEECCCCCC-H----HHHHHHHH
Confidence 110 00011111111 01112222222 222345667899999998775 2 44566665
Q ss_pred hC-CCCCcEEEEecc--CC----HHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCCCCCCChhhhhhhHHHHH
Q 008605 448 SS-PVTAQYLFVTAT--LP----VEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSAL 520 (560)
Q Consensus 448 ~~-~~~~Q~IllSAT--lp----~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~K~~~L 520 (560)
.. +.+.++|++-=+ +| -.+...+... .-+.+..... ......+ .+.. .++ ..+...+
T Consensus 552 ~a~~~garvVlvGD~~QL~sV~aG~~f~~L~~~-gv~t~~l~~i-~rq~~~v--~i~~--~~~----------~~r~~~i 615 (1960)
T TIGR02760 552 KAEQHNSKLILLNDSAQRQGMSAGSAIDLLKEG-GVTTYAWVDT-KQQKASV--EISE--AVD----------KLRVDYI 615 (1960)
T ss_pred HHhhcCCEEEEEcChhhcCccccchHHHHHHHC-CCcEEEeecc-cccCcce--eeec--cCc----------hHHHHHH
Confidence 54 457888887654 22 2444444432 1112111111 1111111 1111 111 1233334
Q ss_pred HHHHHh-C-CCCcEEEEeCchHHHHHHHHHHHh
Q 008605 521 LQLIEK-S-PVSKTIVFCNKVCFSYKCNNLFGF 551 (560)
Q Consensus 521 ~~lL~~-~-~~~ktIIFcnS~~~a~~la~~Lk~ 551 (560)
.+-+.. . ....++||..+..+.+.|....+.
T Consensus 616 a~~y~~L~~~r~~tliv~~t~~dr~~Ln~~iR~ 648 (1960)
T TIGR02760 616 ASAWLDLTPDRQNSQVLATTHREQQDLTQIIRN 648 (1960)
T ss_pred HHHHHhcccccCceEEEcCCcHHHHHHHHHHHH
Confidence 433322 2 334699999999999998888766
No 201
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.93 E-value=0.061 Score=63.11 Aligned_cols=45 Identities=22% Similarity=0.356 Sum_probs=30.6
Q ss_pred CCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHH
Q 008605 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466 (560)
Q Consensus 419 ~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v 466 (560)
...+++||||+|+|. . .-...|.++++..+..+.+|+++ |-+..+
T Consensus 119 ~~~KV~IIDEad~lt-~-~a~NaLLK~LEEpP~~~~fIl~t-t~~~kL 163 (824)
T PRK07764 119 SRYKIFIIDEAHMVT-P-QGFNALLKIVEEPPEHLKFIFAT-TEPDKV 163 (824)
T ss_pred CCceEEEEechhhcC-H-HHHHHHHHHHhCCCCCeEEEEEe-CChhhh
Confidence 467899999999997 3 34445566666667777777765 544433
No 202
>PRK14974 cell division protein FtsY; Provisional
Probab=95.93 E-value=0.092 Score=55.37 Aligned_cols=52 Identities=8% Similarity=0.125 Sum_probs=41.0
Q ss_pred CccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHH
Q 008605 420 NLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLV 471 (560)
Q Consensus 420 ~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~ 471 (560)
..++|+||.+.++..+..+...++.+.+...+..-+++++||...+..+.+.
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~ 273 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAR 273 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHH
Confidence 5679999999998755667788888888777777889999998766555443
No 203
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.93 E-value=0.059 Score=56.67 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=19.1
Q ss_pred cCCcEEEEcCCCCcchhhcHHHHHHHHH
Q 008605 304 EGKSCILADQSGSGKTLAYLLPVIQRLR 331 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~llpil~~l~ 331 (560)
.+.++++.++||+|||... ..+...+.
T Consensus 182 ~~~~Lll~G~~GtGKThLa-~aIa~~l~ 208 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLS-NCIAKELL 208 (329)
T ss_pred cCCcEEEECCCCCcHHHHH-HHHHHHHH
Confidence 3578999999999999643 23444443
No 204
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.93 E-value=0.13 Score=55.29 Aligned_cols=74 Identities=5% Similarity=0.039 Sum_probs=43.1
Q ss_pred EECHHHHHHHHHhccccCCCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCC
Q 008605 401 IATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFP 475 (560)
Q Consensus 401 V~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~ 475 (560)
+.+|..+.+.+..-. .-.++++|+||-+=+...+......+..+++...+..-++.+|||.-......+.+.|.
T Consensus 302 ~~d~~~L~~aL~~lk-~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F~ 375 (436)
T PRK11889 302 VRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFK 375 (436)
T ss_pred cCCHHHHHHHHHHHH-hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHhc
Confidence 346777766554311 11257899999997766444445555666655555555677999876433333444443
No 205
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.88 E-value=0.029 Score=56.09 Aligned_cols=43 Identities=23% Similarity=0.349 Sum_probs=25.7
Q ss_pred ccEEEEccccccCCCCChHHHHHHHHhhC-CCC-CcEEEEeccCCH
Q 008605 421 LRCAILDEVDILFNDEDFEVALQSLISSS-PVT-AQYLFVTATLPV 464 (560)
Q Consensus 421 l~~LViDEah~ll~d~~f~~~l~~Il~~~-~~~-~Q~IllSATlp~ 464 (560)
+++|+|||+|.+..+..+...+..++... ..+ .++|+ |++.|+
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~-ts~~~p 142 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLI-TGDRPP 142 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEE-eCCCCh
Confidence 46899999999874444555555555443 223 35555 555543
No 206
>PRK04296 thymidine kinase; Provisional
Probab=95.86 E-value=0.019 Score=55.44 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=22.8
Q ss_pred CcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcC
Q 008605 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAP 353 (560)
Q Consensus 306 ~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~P 353 (560)
.=.++.+|+|+|||...+ -++.++.. .+.+++|+-|
T Consensus 3 ~i~litG~~GsGKTT~~l-~~~~~~~~-----------~g~~v~i~k~ 38 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELL-QRAYNYEE-----------RGMKVLVFKP 38 (190)
T ss_pred EEEEEECCCCCHHHHHHH-HHHHHHHH-----------cCCeEEEEec
Confidence 346789999999997543 33333322 2456777766
No 207
>PRK08727 hypothetical protein; Validated
Probab=95.85 E-value=0.034 Score=55.47 Aligned_cols=48 Identities=17% Similarity=0.230 Sum_probs=26.0
Q ss_pred CCccEEEEccccccCCCCChHHHHHHHHhhCC-CCCcEEEEeccCCHHH
Q 008605 419 INLRCAILDEVDILFNDEDFEVALQSLISSSP-VTAQYLFVTATLPVEI 466 (560)
Q Consensus 419 ~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~-~~~Q~IllSATlp~~v 466 (560)
.++++|||||+|.+..+......+-.++.... ...++|+.|-..|..+
T Consensus 92 ~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l 140 (233)
T PRK08727 92 EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGL 140 (233)
T ss_pred hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhh
Confidence 34578999999988733333333334443332 2345555554444443
No 208
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=95.79 E-value=0.041 Score=64.76 Aligned_cols=158 Identities=22% Similarity=0.206 Sum_probs=95.0
Q ss_pred CCChHHHHHHHHHHH-----cCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHH
Q 008605 289 LRPSQIQAMAFPPVV-----EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLS 363 (560)
Q Consensus 289 ~~pt~iQ~~aip~il-----~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~ 363 (560)
..+.++|.+.+..+. .+.+.++....|.|||+..+..+....... ....+.++++||+. ++.++.+
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~--------~~~~~~~liv~p~s-~~~nw~~ 407 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESI--------KVYLGPALIVVPAS-LLSNWKR 407 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcc--------cCCCCCeEEEecHH-HHHHHHH
Confidence 456777888876644 256778889999999987655444412111 11145799999974 5566777
Q ss_pred HHHhhhcCCCCce-EEEEeCCcch----HHHHHHhcC-C----CcEEEECHHHHHHHH-HhccccCCCccEEEEcccccc
Q 008605 364 NCRSLSKCGVPFR-SMVVTGGFRQ----KTQLENLQE-G----VDVLIATPGRFMFLI-KEGILQLINLRCAILDEVDIL 432 (560)
Q Consensus 364 ~l~~l~~~~~~i~-v~~l~gg~~~----~~~~~~l~~-~----~~IlV~TP~~L~~ll-~~~~~~l~~l~~LViDEah~l 432 (560)
.+.++. ..++ +...+|.... ......+.. . .+++++|.+.+.... ....+.-....++|+||+|.+
T Consensus 408 e~~k~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~i 484 (866)
T COG0553 408 EFEKFA---PDLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRI 484 (866)
T ss_pred HHhhhC---ccccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHH
Confidence 776664 3455 6677776641 233333322 2 689999999887732 112233345678999999997
Q ss_pred CCCCChHHHHHHHHhhCCCCCcEEEEeccC
Q 008605 433 FNDEDFEVALQSLISSSPVTAQYLFVTATL 462 (560)
Q Consensus 433 l~d~~f~~~l~~Il~~~~~~~Q~IllSATl 462 (560)
.+... ..-..+. .+..... +.+|.|+
T Consensus 485 kn~~s--~~~~~l~-~~~~~~~-~~LtgTP 510 (866)
T COG0553 485 KNDQS--SEGKALQ-FLKALNR-LDLTGTP 510 (866)
T ss_pred hhhhh--HHHHHHH-HHhhcce-eeCCCCh
Confidence 73221 1112222 2222222 6778887
No 209
>PHA02533 17 large terminase protein; Provisional
Probab=95.78 E-value=0.07 Score=59.75 Aligned_cols=149 Identities=13% Similarity=0.086 Sum_probs=87.0
Q ss_pred CChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhh
Q 008605 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (560)
Q Consensus 290 ~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~ 369 (560)
.|.|+|...+..+..++-.++..+-..|||.+....++...... .+..+++++|++.-|..+++.++.+.
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~----------~~~~v~i~A~~~~QA~~vF~~ik~~i 128 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN----------KDKNVGILAHKASMAAEVLDRTKQAI 128 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC----------CCCEEEEEeCCHHHHHHHHHHHHHHH
Confidence 47899999988776666667888899999988765555444321 24589999999999999998887665
Q ss_pred cCCCCc-eEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCCChHHHHHHHHhh
Q 008605 370 KCGVPF-RSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448 (560)
Q Consensus 370 ~~~~~i-~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~l~~Il~~ 448 (560)
...+.+ +..... . ....-.+.+|..|.+.|-.. +...-.+..++|+||+|.+- + +...+..+...
T Consensus 129 e~~P~l~~~~i~~-~---~~~~I~l~NGS~I~~lss~~-------~t~rG~~~~~liiDE~a~~~-~--~~e~~~ai~p~ 194 (534)
T PHA02533 129 ELLPDFLQPGIVE-W---NKGSIELENGSKIGAYASSP-------DAVRGNSFAMIYIDECAFIP-N--FIDFWLAIQPV 194 (534)
T ss_pred HhCHHHhhcceee-c---CccEEEeCCCCEEEEEeCCC-------CccCCCCCceEEEeccccCC-C--HHHHHHHHHHH
Confidence 421211 111100 0 00111224566665554221 11122356789999999876 3 33333333322
Q ss_pred CC--CCCcEEEEeccC
Q 008605 449 SP--VTAQYLFVTATL 462 (560)
Q Consensus 449 ~~--~~~Q~IllSATl 462 (560)
+. ...+++++|..-
T Consensus 195 lasg~~~r~iiiSTp~ 210 (534)
T PHA02533 195 ISSGRSSKIIITSTPN 210 (534)
T ss_pred HHcCCCceEEEEECCC
Confidence 22 223555655553
No 210
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.73 E-value=0.018 Score=50.35 Aligned_cols=18 Identities=33% Similarity=0.521 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCCcchhhc
Q 008605 305 GKSCILADQSGSGKTLAY 322 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~ 322 (560)
+..+++.+|+|+|||...
T Consensus 2 ~~~~~l~G~~G~GKTtl~ 19 (148)
T smart00382 2 GEVILIVGPPGSGKTTLA 19 (148)
T ss_pred CCEEEEECCCCCcHHHHH
Confidence 567899999999999764
No 211
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.72 E-value=0.055 Score=53.04 Aligned_cols=19 Identities=32% Similarity=0.324 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCCcchhhc
Q 008605 304 EGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~ 322 (560)
.+.++++.+++|+|||...
T Consensus 37 ~~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLL 55 (226)
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4568999999999999754
No 212
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.72 E-value=0.15 Score=51.28 Aligned_cols=48 Identities=17% Similarity=0.284 Sum_probs=28.5
Q ss_pred CCCccEEEEccccccCCCCChHH-HHHHHHhh-CCCCCcEEEEeccCCHHH
Q 008605 418 LINLRCAILDEVDILFNDEDFEV-ALQSLISS-SPVTAQYLFVTATLPVEI 466 (560)
Q Consensus 418 l~~l~~LViDEah~ll~d~~f~~-~l~~Il~~-~~~~~Q~IllSATlp~~v 466 (560)
+..+++|||||++... ...+.. .+..|+.. ......+|+.|---+.++
T Consensus 160 l~~~dlLvIDDig~~~-~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l 209 (244)
T PRK07952 160 LSNVDLLVIDEIGVQT-ESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEM 209 (244)
T ss_pred hccCCEEEEeCCCCCC-CCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHH
Confidence 4468899999999876 444543 33444443 333456666555444443
No 213
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=95.67 E-value=0.039 Score=64.00 Aligned_cols=154 Identities=20% Similarity=0.218 Sum_probs=89.4
Q ss_pred CCChHHHHHHHHHHH---cC-CcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHH
Q 008605 289 LRPSQIQAMAFPPVV---EG-KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (560)
Q Consensus 289 ~~pt~iQ~~aip~il---~g-~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~ 364 (560)
.++.++|...+.... ++ -|-|..-.+|-|||.. .+.++..+.+. ....||. +||+|+-.|.+=. ..
T Consensus 393 G~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQ-tIsLitYLmE~-------K~~~GP~-LvivPlstL~NW~-~E 462 (1157)
T KOG0386|consen 393 GELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQ-TISLITYLMEH-------KQMQGPF-LIIVPLSTLVNWS-SE 462 (1157)
T ss_pred CCCchhhhhhhHHHhhccCCCcccccchhcccchHHH-HHHHHHHHHHH-------cccCCCe-EEeccccccCCch-hh
Confidence 477888888876643 22 3667888999999976 44555666554 2345665 6778988876533 33
Q ss_pred HHhhhcCCCCceEEEEeCCcchHHH--HHHhcCCCcEEEECHHHHHHHHHhccccCC--CccEEEEccccccCCCCChHH
Q 008605 365 CRSLSKCGVPFRSMVVTGGFRQKTQ--LENLQEGVDVLIATPGRFMFLIKEGILQLI--NLRCAILDEVDILFNDEDFEV 440 (560)
Q Consensus 365 l~~l~~~~~~i~v~~l~gg~~~~~~--~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~--~l~~LViDEah~ll~d~~f~~ 440 (560)
+..+. +.+......|....... .+......+||++|.+.+.. ..-.|. +-.++||||-|+|-+ ...
T Consensus 463 f~kWa---PSv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik----dk~lLsKI~W~yMIIDEGHRmKN---a~~ 532 (1157)
T KOG0386|consen 463 FPKWA---PSVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK----DKALLSKISWKYMIIDEGHRMKN---AIC 532 (1157)
T ss_pred ccccc---cceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC----CHHHHhccCCcceeecccccccc---hhh
Confidence 43332 45555555554322211 11112458999999988763 111222 346899999999973 222
Q ss_pred HHHHHHhhCCCCCcEEEEeccC
Q 008605 441 ALQSLISSSPVTAQYLFVTATL 462 (560)
Q Consensus 441 ~l~~Il~~~~~~~Q~IllSATl 462 (560)
.+...+.-.-.....++++.|.
T Consensus 533 KLt~~L~t~y~~q~RLLLTGTP 554 (1157)
T KOG0386|consen 533 KLTDTLNTHYRAQRRLLLTGTP 554 (1157)
T ss_pred HHHHHhhccccchhhhhhcCCh
Confidence 2233232111223346667775
No 214
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.62 E-value=0.091 Score=54.76 Aligned_cols=40 Identities=23% Similarity=0.414 Sum_probs=27.0
Q ss_pred CCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEec
Q 008605 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTA 460 (560)
Q Consensus 419 ~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSA 460 (560)
...++|||||+|.+. ......+..+++..+..+++|+.+.
T Consensus 124 ~~~~vlilDe~~~l~--~~~~~~L~~~le~~~~~~~~Il~~~ 163 (337)
T PRK12402 124 ADYKTILLDNAEALR--EDAQQALRRIMEQYSRTCRFIIATR 163 (337)
T ss_pred CCCcEEEEeCcccCC--HHHHHHHHHHHHhccCCCeEEEEeC
Confidence 456789999999885 2344556666666666666666443
No 215
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=95.59 E-value=0.062 Score=59.43 Aligned_cols=71 Identities=14% Similarity=0.176 Sum_probs=52.6
Q ss_pred HHHHHHHHHHH-----cC----CcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHH
Q 008605 293 QIQAMAFPPVV-----EG----KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLS 363 (560)
Q Consensus 293 ~iQ~~aip~il-----~g----~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~ 363 (560)
|+|.-++-.++ .| +.+++..+-|-|||.....-++..+.-. ...+..+++++++++-|..+++
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~--------g~~~~~i~~~A~~~~QA~~~f~ 72 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD--------GEPGAEIYCAANTRDQAKIVFD 72 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC--------CccCceEEEEeCCHHHHHHHHH
Confidence 57887776666 22 3588888999999987655445444321 2356789999999999999999
Q ss_pred HHHhhhcC
Q 008605 364 NCRSLSKC 371 (560)
Q Consensus 364 ~l~~l~~~ 371 (560)
.++.+...
T Consensus 73 ~~~~~i~~ 80 (477)
T PF03354_consen 73 EAKKMIEA 80 (477)
T ss_pred HHHHHHHh
Confidence 99888663
No 216
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.59 E-value=0.098 Score=57.38 Aligned_cols=45 Identities=13% Similarity=0.231 Sum_probs=26.0
Q ss_pred CcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHH
Q 008605 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQV 361 (560)
Q Consensus 306 ~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi 361 (560)
..+++.+|+|+|||.... .+...+... ..+.+++|+ +..++..+.
T Consensus 149 ~~l~l~G~~G~GKThL~~-ai~~~~~~~---------~~~~~v~yi-~~~~~~~~~ 193 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLH-AIGNYILEK---------NPNAKVVYV-TSEKFTNDF 193 (450)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHHh---------CCCCeEEEE-EHHHHHHHH
Confidence 458999999999996532 333444322 123456665 444554443
No 217
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.55 E-value=0.072 Score=58.48 Aligned_cols=47 Identities=17% Similarity=0.203 Sum_probs=26.7
Q ss_pred CCccEEEEccccccCCCCChHHHHHHHHhhC-CCCCcEEEEeccCCHH
Q 008605 419 INLRCAILDEVDILFNDEDFEVALQSLISSS-PVTAQYLFVTATLPVE 465 (560)
Q Consensus 419 ~~l~~LViDEah~ll~d~~f~~~l~~Il~~~-~~~~Q~IllSATlp~~ 465 (560)
..+++|||||+|.+.........+-.++..+ ..+.|+|+.|-..|..
T Consensus 205 ~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~ 252 (450)
T PRK14087 205 CQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPEL 252 (450)
T ss_pred ccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHH
Confidence 4678999999998863223334444444333 3345666655544433
No 218
>PRK08116 hypothetical protein; Validated
Probab=95.39 E-value=0.24 Score=50.57 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=18.1
Q ss_pred cEEEEcCCCCcchhhcHHHHHHHHHH
Q 008605 307 SCILADQSGSGKTLAYLLPVIQRLRQ 332 (560)
Q Consensus 307 dvlv~apTGSGKTla~llpil~~l~~ 332 (560)
.+++.+++|+|||.... .+.+.+..
T Consensus 116 gl~l~G~~GtGKThLa~-aia~~l~~ 140 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAA-CIANELIE 140 (268)
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHHH
Confidence 49999999999996543 45555543
No 219
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=95.34 E-value=0.089 Score=60.37 Aligned_cols=66 Identities=29% Similarity=0.409 Sum_probs=50.6
Q ss_pred CChHHHHHHHHHHHcC-----CcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHH
Q 008605 290 RPSQIQAMAFPPVVEG-----KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (560)
Q Consensus 290 ~pt~iQ~~aip~il~g-----~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~ 364 (560)
.|+-.|..+|..+.++ +..++.+-||||||+...- ++..+ +..+|||+|++.+|.|+++.
T Consensus 9 ~~~~~Q~~ai~~l~~~~~~~~~~~~l~Gvtgs~kt~~~a~-~~~~~--------------~~p~Lvi~~n~~~A~ql~~e 73 (655)
T TIGR00631 9 QPAGDQPKAIAKLVEGLTDGEKHQTLLGVTGSGKTFTMAN-VIAQV--------------NRPTLVIAHNKTLAAQLYNE 73 (655)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEECCCCcHHHHHHHH-HHHHh--------------CCCEEEEECCHHHHHHHHHH
Confidence 6888999999887543 2567899999999986432 22221 12389999999999999999
Q ss_pred HHhhhc
Q 008605 365 CRSLSK 370 (560)
Q Consensus 365 l~~l~~ 370 (560)
++.+..
T Consensus 74 l~~f~p 79 (655)
T TIGR00631 74 FKEFFP 79 (655)
T ss_pred HHHhCC
Confidence 999864
No 220
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.26 E-value=0.12 Score=53.63 Aligned_cols=40 Identities=20% Similarity=0.270 Sum_probs=28.2
Q ss_pred CccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEec
Q 008605 420 NLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTA 460 (560)
Q Consensus 420 ~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSA 460 (560)
..++|||||+|.+. .......+..+++..+.++++|+.+.
T Consensus 100 ~~~vliiDe~d~l~-~~~~~~~L~~~le~~~~~~~~Ilt~n 139 (316)
T PHA02544 100 GGKVIIIDEFDRLG-LADAQRHLRSFMEAYSKNCSFIITAN 139 (316)
T ss_pred CCeEEEEECccccc-CHHHHHHHHHHHHhcCCCceEEEEcC
Confidence 45789999999984 23355667777777777777776443
No 221
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.20 E-value=0.35 Score=56.60 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=16.3
Q ss_pred EEEEcCCCCcchhhcHHHHHHHHH
Q 008605 308 CILADQSGSGKTLAYLLPVIQRLR 331 (560)
Q Consensus 308 vlv~apTGSGKTla~llpil~~l~ 331 (560)
++|.++||+|||++... ++..+.
T Consensus 784 LYIyG~PGTGKTATVK~-VLrELq 806 (1164)
T PTZ00112 784 LYISGMPGTGKTATVYS-VIQLLQ 806 (1164)
T ss_pred EEEECCCCCCHHHHHHH-HHHHHH
Confidence 35999999999987543 444443
No 222
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.12 E-value=0.095 Score=51.00 Aligned_cols=55 Identities=16% Similarity=0.168 Sum_probs=38.5
Q ss_pred CCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHh
Q 008605 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEV 473 (560)
Q Consensus 419 ~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~ 473 (560)
++.++|+||-+-+...+......++.++....+..-++.+|||...+..+.+..+
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~ 136 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAF 136 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHH
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHH
Confidence 4577899999987664445666777777777666678899999976655544444
No 223
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.07 E-value=0.1 Score=47.53 Aligned_cols=45 Identities=20% Similarity=0.256 Sum_probs=25.5
Q ss_pred CCccEEEEccccccCCC---------CChHHHHHHHHhhCCCCCcEEEEeccCC
Q 008605 419 INLRCAILDEVDILFND---------EDFEVALQSLISSSPVTAQYLFVTATLP 463 (560)
Q Consensus 419 ~~l~~LViDEah~ll~d---------~~f~~~l~~Il~~~~~~~Q~IllSATlp 463 (560)
....++|+||++.+... ......+..+..........+++....+
T Consensus 84 ~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~ 137 (165)
T cd01120 84 GGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVP 137 (165)
T ss_pred CCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecC
Confidence 46789999999987511 1223555555555543334444444443
No 224
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.05 E-value=0.17 Score=55.51 Aligned_cols=47 Identities=13% Similarity=0.263 Sum_probs=25.5
Q ss_pred CccEEEEccccccCCCCChHHHHHHHHhhC-CCCCcEEEEeccCCHHH
Q 008605 420 NLRCAILDEVDILFNDEDFEVALQSLISSS-PVTAQYLFVTATLPVEI 466 (560)
Q Consensus 420 ~l~~LViDEah~ll~d~~f~~~l~~Il~~~-~~~~Q~IllSATlp~~v 466 (560)
.+++|+|||+|.+.+.......+-.++..+ ....|+|+.|-..|..+
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l 241 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKL 241 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHH
Confidence 467899999998873222223333333322 23456665554445443
No 225
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.04 E-value=0.13 Score=55.60 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=17.5
Q ss_pred CcEEEEcCCCCcchhhcHHHHHHHHH
Q 008605 306 KSCILADQSGSGKTLAYLLPVIQRLR 331 (560)
Q Consensus 306 ~dvlv~apTGSGKTla~llpil~~l~ 331 (560)
..+++.+++|+|||... -.+...+.
T Consensus 137 n~l~l~G~~G~GKThL~-~ai~~~l~ 161 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLL-HAIGNEIL 161 (405)
T ss_pred CeEEEECCCCCcHHHHH-HHHHHHHH
Confidence 35889999999999653 34444443
No 226
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.02 E-value=0.19 Score=57.88 Aligned_cols=41 Identities=22% Similarity=0.358 Sum_probs=29.3
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCC--c-EEEEcCCCCcchhhcH
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGK--S-CILADQSGSGKTLAYL 323 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~--d-vlv~apTGSGKTla~l 323 (560)
++|+++--.+.+++.|... +..++ + +|++++.|+|||.+..
T Consensus 13 qtFdEVIGQe~Vv~~L~~a---------------L~~gRL~HAyLFtGPpGvGKTTlAr 56 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHA---------------LDGGRLHHAYLFTGTRGVGKTTLSR 56 (830)
T ss_pred CcHHHHcCcHHHHHHHHHH---------------HhcCCCCeEEEEECCCCCCHHHHHH
Confidence 5788887778777776541 23332 3 5899999999997654
No 227
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.98 E-value=0.045 Score=54.15 Aligned_cols=49 Identities=18% Similarity=0.274 Sum_probs=30.0
Q ss_pred CCCccEEEEccccccCCCCChHHHHHHHHhhC-CCCCcEEEEeccCCHHH
Q 008605 418 LINLRCAILDEVDILFNDEDFEVALQSLISSS-PVTAQYLFVTATLPVEI 466 (560)
Q Consensus 418 l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~-~~~~Q~IllSATlp~~v 466 (560)
+...++|+||++|.+.....+...+-.++..+ ..+.|+|+.|...|.++
T Consensus 95 ~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 95 LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 34678999999999873222344444444433 34667877776766543
No 228
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.96 E-value=0.19 Score=58.87 Aligned_cols=45 Identities=22% Similarity=0.344 Sum_probs=29.1
Q ss_pred CCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHH
Q 008605 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466 (560)
Q Consensus 419 ~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v 466 (560)
...+++||||||+|. ..-...+.++++.-+..+.+|+. .|-+..+
T Consensus 118 gk~KViIIDEAh~LT--~eAqNALLKtLEEPP~~vrFILa-TTe~~kL 162 (944)
T PRK14949 118 GRFKVYLIDEVHMLS--RSSFNALLKTLEEPPEHVKFLLA-TTDPQKL 162 (944)
T ss_pred CCcEEEEEechHhcC--HHHHHHHHHHHhccCCCeEEEEE-CCCchhc
Confidence 457899999999996 33444455556665666666665 4544443
No 229
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.95 E-value=0.55 Score=50.34 Aligned_cols=133 Identities=18% Similarity=0.171 Sum_probs=76.5
Q ss_pred CCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCC-HHHHHHHHHHHHhhhcCCCCceEEEEeCC
Q 008605 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPT-AELASQVLSNCRSLSKCGVPFRSMVVTGG 383 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~Pt-reLa~Qi~~~l~~l~~~~~~i~v~~l~gg 383 (560)
++-+.+++|||-|||....=-+....+.. .....+||-+-| |-=|.++...+-++. ++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~---------~~~kVaiITtDtYRIGA~EQLk~Ya~im----~v-------- 261 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLK---------KKKKVAIITTDTYRIGAVEQLKTYADIM----GV-------- 261 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhc---------cCcceEEEEeccchhhHHHHHHHHHHHh----CC--------
Confidence 67789999999999987433232222111 123345555544 222222222222221 11
Q ss_pred cchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCC
Q 008605 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLP 463 (560)
Q Consensus 384 ~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp 463 (560)
+-.+|-+|.-|...+. .+.++++|.||=+-+-.-|......++.++.....---.+.+|||..
T Consensus 262 -------------p~~vv~~~~el~~ai~----~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K 324 (407)
T COG1419 262 -------------PLEVVYSPKELAEAIE----ALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK 324 (407)
T ss_pred -------------ceEEecCHHHHHHHHH----HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc
Confidence 1234445666655544 35567889999887655454566667777766655556889999998
Q ss_pred HHHHHHHHHhCC
Q 008605 464 VEIYNKLVEVFP 475 (560)
Q Consensus 464 ~~v~~~l~~~~~ 475 (560)
......+...|.
T Consensus 325 ~~dlkei~~~f~ 336 (407)
T COG1419 325 YEDLKEIIKQFS 336 (407)
T ss_pred hHHHHHHHHHhc
Confidence 666555555553
No 230
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.90 E-value=0.36 Score=53.49 Aligned_cols=42 Identities=31% Similarity=0.432 Sum_probs=30.1
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC---CcEEEEcCCCCcchhhcHH
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG---KSCILADQSGSGKTLAYLL 324 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g---~dvlv~apTGSGKTla~ll 324 (560)
.+|+++--.+.+.+.|.. ++..| +.+|+++|.|+|||.++.+
T Consensus 10 ~~f~dliGQe~vv~~L~~---------------a~~~~ri~ha~Lf~Gp~G~GKTT~Ari 54 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRN---------------AFTLNKIPQSILLVGASGVGKTTCARI 54 (491)
T ss_pred CCHHHhcCcHHHHHHHHH---------------HHHcCCCCceEEEECCCCccHHHHHHH
Confidence 578888767777776653 23334 3689999999999986543
No 231
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.85 E-value=0.41 Score=54.24 Aligned_cols=45 Identities=24% Similarity=0.342 Sum_probs=29.0
Q ss_pred CCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHH
Q 008605 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466 (560)
Q Consensus 419 ~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v 466 (560)
...+++||||+|+|. . .-...+...++..+..+-+|+.+ |-+..+
T Consensus 117 ~~~KVvIIDEah~Lt-~-~A~NALLK~LEEpp~~~~fIL~t-te~~kl 161 (584)
T PRK14952 117 SRYRIFIVDEAHMVT-T-AGFNALLKIVEEPPEHLIFIFAT-TEPEKV 161 (584)
T ss_pred CCceEEEEECCCcCC-H-HHHHHHHHHHhcCCCCeEEEEEe-CChHhh
Confidence 567899999999997 3 33334455556556666666655 544443
No 232
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=94.80 E-value=0.13 Score=56.04 Aligned_cols=29 Identities=24% Similarity=0.272 Sum_probs=22.8
Q ss_pred HHHHHHHHHHcCCcEEEEcCCCCcchhhc
Q 008605 294 IQAMAFPPVVEGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 294 iQ~~aip~il~g~dvlv~apTGSGKTla~ 322 (560)
.....+..+..++++++.+|+|+|||..+
T Consensus 183 ~le~l~~~L~~~~~iil~GppGtGKT~lA 211 (459)
T PRK11331 183 TIETILKRLTIKKNIILQGPPGVGKTFVA 211 (459)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCHHHHH
Confidence 34445556778999999999999999764
No 233
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=94.79 E-value=0.097 Score=60.54 Aligned_cols=127 Identities=20% Similarity=0.214 Sum_probs=89.4
Q ss_pred CChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhh
Q 008605 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (560)
Q Consensus 290 ~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~ 369 (560)
.|..+|.-. .+.....-++-+.||-|||++..+|+.-..+. +-.+.++.-.--||..-...+..+.
T Consensus 80 ~~~dVQliG--~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~------------gkgVhvVTvNdYLA~RDae~m~~l~ 145 (822)
T COG0653 80 RHFDVQLLG--GIVLHLGDIAEMRTGEGKTLVATLPAYLNALA------------GKGVHVVTVNDYLARRDAEWMGPLY 145 (822)
T ss_pred ChhhHHHhh--hhhhcCCceeeeecCCchHHHHHHHHHHHhcC------------CCCcEEeeehHHhhhhCHHHHHHHH
Confidence 344455443 44445667889999999999999998654432 3346777778889988888888887
Q ss_pred cCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHH-HHHHhc------cccCCCccEEEEccccccC
Q 008605 370 KCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFM-FLIKEG------ILQLINLRCAILDEVDILF 433 (560)
Q Consensus 370 ~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~-~ll~~~------~~~l~~l~~LViDEah~ll 433 (560)
.+ .++.+++...+....+..... .|||..+|-..|- +.++.+ ......+.+-|+||+|-++
T Consensus 146 ~~-LGlsvG~~~~~m~~~ek~~aY--~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSIL 213 (822)
T COG0653 146 EF-LGLSVGVILAGMSPEEKRAAY--ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSIL 213 (822)
T ss_pred HH-cCCceeeccCCCChHHHHHHH--hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhee
Confidence 75 688999988888766555444 4899999987663 233221 1224467889999999765
No 234
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.78 E-value=0.64 Score=53.97 Aligned_cols=70 Identities=14% Similarity=0.252 Sum_probs=44.6
Q ss_pred EECHHHHHHHHHhccccCCCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhC
Q 008605 401 IATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVF 474 (560)
Q Consensus 401 V~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~ 474 (560)
+.+|..+...+.. +.+.++|+||=+=+...+......+..+.....+..-++++|||...+..+.+.+.|
T Consensus 248 ~~~~~~l~~al~~----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f 317 (767)
T PRK14723 248 VKDAADLRFALAA----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAY 317 (767)
T ss_pred cCCHHHHHHHHHH----hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHH
Confidence 3467776666653 345689999999877644445555666555555556788999998755544444444
No 235
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.77 E-value=0.23 Score=55.36 Aligned_cols=39 Identities=23% Similarity=0.455 Sum_probs=27.0
Q ss_pred CCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEe
Q 008605 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459 (560)
Q Consensus 419 ~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllS 459 (560)
...+++||||+|+|. ...+ ..+.+.++..+..+.+|+.+
T Consensus 118 ~~~kV~iIDE~~~ls-~~a~-naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLS-GHSF-NALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcC-HHHH-HHHHHHHhccCCCeEEEEEE
Confidence 357899999999997 3333 34455666666777777755
No 236
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=94.71 E-value=0.17 Score=55.55 Aligned_cols=48 Identities=6% Similarity=0.176 Sum_probs=27.0
Q ss_pred CCccEEEEccccccCCCCChHHHHHHHHhhC-CCCCcEEEEeccCCHHH
Q 008605 419 INLRCAILDEVDILFNDEDFEVALQSLISSS-PVTAQYLFVTATLPVEI 466 (560)
Q Consensus 419 ~~l~~LViDEah~ll~d~~f~~~l~~Il~~~-~~~~Q~IllSATlp~~v 466 (560)
..+++|+|||+|.+.........+-.++..+ ..+.|+|+.|-+.|..+
T Consensus 201 ~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l 249 (445)
T PRK12422 201 RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDL 249 (445)
T ss_pred ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHH
Confidence 3678999999999873222233333333322 23556666555555544
No 237
>PLN03025 replication factor C subunit; Provisional
Probab=94.69 E-value=0.31 Score=50.92 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=25.9
Q ss_pred CccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEe
Q 008605 420 NLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459 (560)
Q Consensus 420 ~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllS 459 (560)
..+++||||+|.|. ..-...+.++++..+..+.+++.+
T Consensus 99 ~~kviiiDE~d~lt--~~aq~aL~~~lE~~~~~t~~il~~ 136 (319)
T PLN03025 99 RHKIVILDEADSMT--SGAQQALRRTMEIYSNTTRFALAC 136 (319)
T ss_pred CeEEEEEechhhcC--HHHHHHHHHHHhcccCCceEEEEe
Confidence 47899999999987 334555666666655556655543
No 238
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.61 E-value=1 Score=50.25 Aligned_cols=56 Identities=14% Similarity=0.222 Sum_probs=31.7
Q ss_pred HHHHHHHHHhccccCCCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCH
Q 008605 404 PGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPV 464 (560)
Q Consensus 404 P~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~ 464 (560)
++.+...+.. +.+.++|+||.+-....+......+..|.... ...-+++++++...
T Consensus 416 ~~~L~~aL~~----l~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAtss~ 471 (559)
T PRK12727 416 AESLLDLLER----LRDYKLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANAHF 471 (559)
T ss_pred HHHHHHHHHH----hccCCEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCCCh
Confidence 4445555543 34678999999976542322333344443322 33457888888754
No 239
>PRK11054 helD DNA helicase IV; Provisional
Probab=94.61 E-value=0.23 Score=57.30 Aligned_cols=82 Identities=17% Similarity=0.082 Sum_probs=56.2
Q ss_pred CCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhh
Q 008605 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (560)
Q Consensus 289 ~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l 368 (560)
..+++-|.+|+- ....+++|.|..|||||.+..--+...+... .....++|+|+.|+..|..+.+++...
T Consensus 195 ~~L~~~Q~~av~--~~~~~~lV~agaGSGKT~vl~~r~ayLl~~~--------~~~~~~IL~ltft~~AA~em~eRL~~~ 264 (684)
T PRK11054 195 SPLNPSQARAVV--NGEDSLLVLAGAGSGKTSVLVARAGWLLARG--------QAQPEQILLLAFGRQAAEEMDERIRER 264 (684)
T ss_pred CCCCHHHHHHHh--CCCCCeEEEEeCCCCHHHHHHHHHHHHHHhC--------CCCHHHeEEEeccHHHHHHHHHHHHHh
Confidence 468999999874 3345789999999999987544443333221 112347999999999999999988765
Q ss_pred hcCCCCceEEEEe
Q 008605 369 SKCGVPFRSMVVT 381 (560)
Q Consensus 369 ~~~~~~i~v~~l~ 381 (560)
.. ...+.+..++
T Consensus 265 lg-~~~v~v~TFH 276 (684)
T PRK11054 265 LG-TEDITARTFH 276 (684)
T ss_pred cC-CCCcEEEeHH
Confidence 43 1244444433
No 240
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.58 E-value=0.11 Score=53.57 Aligned_cols=56 Identities=20% Similarity=0.275 Sum_probs=34.4
Q ss_pred CcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Q 008605 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (560)
Q Consensus 306 ~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~ 366 (560)
.+++++++|+.|||.. +.++...............|.+++-+|...-....|..+-
T Consensus 62 p~lLivG~snnGKT~I-----i~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL 117 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMI-----IERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAIL 117 (302)
T ss_pred CceEEecCCCCcHHHH-----HHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHH
Confidence 4899999999999973 4444433211111122234677777888776666666553
No 241
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.53 E-value=0.79 Score=49.13 Aligned_cols=63 Identities=6% Similarity=0.049 Sum_probs=36.7
Q ss_pred ECHHHHHHHHHhccccCCCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHH
Q 008605 402 ATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVE 465 (560)
Q Consensus 402 ~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~ 465 (560)
.+|..+...+..-. .....++|+||=+=+...+......+..+.....+..-++.+|||....
T Consensus 268 ~dp~dL~~al~~l~-~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~ 330 (407)
T PRK12726 268 TSPAELEEAVQYMT-YVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSA 330 (407)
T ss_pred CCHHHHHHHHHHHH-hcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccHH
Confidence 35666655554311 2245788898888665434445555566665555444466778877643
No 242
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.48 E-value=0.25 Score=50.04 Aligned_cols=50 Identities=20% Similarity=0.311 Sum_probs=33.2
Q ss_pred cCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Q 008605 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~ 366 (560)
++.++++.+++|+|||..+. ++...+... + .-++.+++.+|+.++...+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~-Ai~~~l~~~-----------g-~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAI-AIGNELLKA-----------G-ISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred cCCcEEEECCCCCcHHHHHH-HHHHHHHHc-----------C-CeEEEEEHHHHHHHHHHHHh
Confidence 67899999999999997643 344444321 2 34455677788777665544
No 243
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=94.43 E-value=0.088 Score=61.23 Aligned_cols=72 Identities=17% Similarity=0.113 Sum_probs=53.0
Q ss_pred CCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhh
Q 008605 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (560)
Q Consensus 289 ~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l 368 (560)
..+++-|.+|+.+ ...+++|.|..|||||.+..--+...+.... ....++|+|+-|+..|.++.+++.++
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~--------v~p~~IL~lTFTnkAA~em~~Rl~~~ 72 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVEN--------ASPHSIMAVTFTNKAAAEMRHRIGAL 72 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCC--------CCHHHeEeeeccHHHHHHHHHHHHHH
Confidence 3588999998854 3468999999999999885444443332211 12346999999999999999999887
Q ss_pred hc
Q 008605 369 SK 370 (560)
Q Consensus 369 ~~ 370 (560)
..
T Consensus 73 ~~ 74 (715)
T TIGR01075 73 LG 74 (715)
T ss_pred hc
Confidence 53
No 244
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=94.35 E-value=0.28 Score=55.55 Aligned_cols=139 Identities=13% Similarity=0.127 Sum_probs=84.4
Q ss_pred HHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhhcCC-CCceEEEE
Q 008605 302 VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCG-VPFRSMVV 380 (560)
Q Consensus 302 il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~~~-~~i~v~~l 380 (560)
....+-.++..|--.|||+... +++..+... ..+.+++|++|.+..++.+++++..+.... ..-.+..+
T Consensus 251 ~fkqk~tVflVPRR~GKTwivv-~iI~~ll~s---------~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~v 320 (738)
T PHA03368 251 HFRQRATVFLVPRRHGKTWFLV-PLIALALAT---------FRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHV 320 (738)
T ss_pred HhhccceEEEecccCCchhhHH-HHHHHHHHh---------CCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeee
Confidence 4455778889999999998765 666655432 246789999999999999999998765421 11112222
Q ss_pred eCCcchHHHHHHhcCC--CcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEE
Q 008605 381 TGGFRQKTQLENLQEG--VDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFV 458 (560)
Q Consensus 381 ~gg~~~~~~~~~l~~~--~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~Ill 458 (560)
.| ... .-.+.+| .-|.+++- -+.+.+.-..++++|||||+.+- +..+...+-.+ . ..++++|++
T Consensus 321 kG-e~I---~i~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk-~~al~~ilp~l-~--~~n~k~I~I 386 (738)
T PHA03368 321 KG-ETI---SFSFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIR-PDAVQTIMGFL-N--QTNCKIIFV 386 (738)
T ss_pred cC-cEE---EEEecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCC-HHHHHHHHHHH-h--ccCccEEEE
Confidence 22 111 0011223 24555531 11223444578999999999987 43333333222 2 248899999
Q ss_pred eccCCH
Q 008605 459 TATLPV 464 (560)
Q Consensus 459 SATlp~ 464 (560)
|.|-..
T Consensus 387 SS~Ns~ 392 (738)
T PHA03368 387 SSTNTG 392 (738)
T ss_pred ecCCCC
Confidence 998643
No 245
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.34 E-value=0.79 Score=46.90 Aligned_cols=71 Identities=6% Similarity=0.075 Sum_probs=40.8
Q ss_pred CHHHHHHHHHhccccCCCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCH-HHHHHHHHhCC
Q 008605 403 TPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPV-EIYNKLVEVFP 475 (560)
Q Consensus 403 TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~-~v~~~l~~~~~ 475 (560)
+|..+...+..- .....+++++||-+=+...+......+..++....+..-++.+|||... ++.+ +.+.|.
T Consensus 138 ~~~~l~~~l~~l-~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~-~~~~f~ 209 (270)
T PRK06731 138 DEAAMTRALTYF-KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIE-IITNFK 209 (270)
T ss_pred CHHHHHHHHHHH-HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHH-HHHHhC
Confidence 455555444321 1123578999999977653333444555555555555457789999764 4444 444443
No 246
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.31 E-value=0.13 Score=48.66 Aligned_cols=48 Identities=23% Similarity=0.277 Sum_probs=31.8
Q ss_pred EEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhh
Q 008605 308 CILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (560)
Q Consensus 308 vlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l 368 (560)
+++.+++|+|||...+--+...+. .+..++|+. +.+-..++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~------------~g~~v~~~s-~e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA------------RGEPGLYVT-LEESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH------------CCCcEEEEE-CCCCHHHHHHHHHHc
Confidence 689999999999765433333332 244577775 446677777777665
No 247
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=94.28 E-value=0.2 Score=52.51 Aligned_cols=142 Identities=13% Similarity=0.098 Sum_probs=72.8
Q ss_pred CCCChHHHHHHHHHHH----cCC---cEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHH
Q 008605 288 FLRPSQIQAMAFPPVV----EGK---SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQ 360 (560)
Q Consensus 288 ~~~pt~iQ~~aip~il----~g~---dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Q 360 (560)
+..++|||..+|..+. .|+ -+++.+|.|.||+..+. .+.+.+.... . .... -|+.
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~-~lA~~LlC~~------~-~~~~----~c~~------ 63 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVAL-ALAEHVLASG------P-DPAA----AQRT------ 63 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHH-HHHHHHhCCC------C-CCCC----cchH------
Confidence 3568899999998765 343 38899999999997543 3334443321 0 0000 1111
Q ss_pred HHHHHHhhh-cCCCCceEEEEeCC-cchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCCCh
Q 008605 361 VLSNCRSLS-KCGVPFRSMVVTGG-FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDF 438 (560)
Q Consensus 361 i~~~l~~l~-~~~~~i~v~~l~gg-~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f 438 (560)
++.+. ..++++.+....-+ ...+ ....|.|-.--.+.+.+.... .....+++|||+||.|. ..-
T Consensus 64 ----c~~~~~g~HPD~~~i~~~p~~~~~k-------~~~~I~idqIR~l~~~~~~~p-~~g~~kV~iI~~ae~m~--~~A 129 (319)
T PRK08769 64 ----RQLIAAGTHPDLQLVSFIPNRTGDK-------LRTEIVIEQVREISQKLALTP-QYGIAQVVIVDPADAIN--RAA 129 (319)
T ss_pred ----HHHHhcCCCCCEEEEecCCCccccc-------ccccccHHHHHHHHHHHhhCc-ccCCcEEEEeccHhhhC--HHH
Confidence 11111 12345544321110 0000 001122211112222222211 23467899999999996 445
Q ss_pred HHHHHHHHhhCCCCCcEEEEecc
Q 008605 439 EVALQSLISSSPVTAQYLFVTAT 461 (560)
Q Consensus 439 ~~~l~~Il~~~~~~~Q~IllSAT 461 (560)
...+-++++.-+.++.+|++|..
T Consensus 130 aNaLLKtLEEPp~~~~fiL~~~~ 152 (319)
T PRK08769 130 CNALLKTLEEPSPGRYLWLISAQ 152 (319)
T ss_pred HHHHHHHhhCCCCCCeEEEEECC
Confidence 55566677776777777777653
No 248
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=94.24 E-value=0.22 Score=57.29 Aligned_cols=66 Identities=35% Similarity=0.461 Sum_probs=50.9
Q ss_pred CChHHHHHHHHHHHcC-----CcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHH
Q 008605 290 RPSQIQAMAFPPVVEG-----KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (560)
Q Consensus 290 ~pt~iQ~~aip~il~g-----~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~ 364 (560)
.|+..|..++..+.++ +..++.+.+|||||+.+. .++... +..+|||+|+..+|.|+++.
T Consensus 12 ~~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~lia-~l~~~~--------------~r~vLIVt~~~~~A~~l~~d 76 (652)
T PRK05298 12 KPAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKTFTMA-NVIARL--------------QRPTLVLAHNKTLAAQLYSE 76 (652)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHHHH-HHHHHh--------------CCCEEEEECCHHHHHHHHHH
Confidence 7999999999887643 257799999999998743 222211 22499999999999999999
Q ss_pred HHhhhc
Q 008605 365 CRSLSK 370 (560)
Q Consensus 365 l~~l~~ 370 (560)
++.+..
T Consensus 77 L~~~~~ 82 (652)
T PRK05298 77 FKEFFP 82 (652)
T ss_pred HHHhcC
Confidence 988853
No 249
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=94.23 E-value=0.39 Score=54.87 Aligned_cols=43 Identities=26% Similarity=0.457 Sum_probs=26.8
Q ss_pred CCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCH
Q 008605 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPV 464 (560)
Q Consensus 419 ~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~ 464 (560)
...+++||||+|+|. ...+. .+.++++.-+..+.+|+. .|-+.
T Consensus 118 g~~KV~IIDEah~Ls-~~a~N-ALLKtLEEPp~~v~FIL~-Tt~~~ 160 (647)
T PRK07994 118 GRFKVYLIDEVHMLS-RHSFN-ALLKTLEEPPEHVKFLLA-TTDPQ 160 (647)
T ss_pred CCCEEEEEechHhCC-HHHHH-HHHHHHHcCCCCeEEEEe-cCCcc
Confidence 467899999999997 33333 344455655556666665 44333
No 250
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=94.23 E-value=0.38 Score=55.18 Aligned_cols=42 Identities=26% Similarity=0.460 Sum_probs=30.2
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC---CcEEEEcCCCCcchhhcHH
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG---KSCILADQSGSGKTLAYLL 324 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g---~dvlv~apTGSGKTla~ll 324 (560)
.+|+++--.+.+++.|... +..+ +.+|+++|.|+|||....+
T Consensus 13 ~tFddIIGQe~vv~~L~~a---------------i~~~rl~Ha~Lf~GP~GvGKTTlAri 57 (709)
T PRK08691 13 KTFADLVGQEHVVKALQNA---------------LDEGRLHHAYLLTGTRGVGKTTIARI 57 (709)
T ss_pred CCHHHHcCcHHHHHHHHHH---------------HHcCCCCeEEEEECCCCCcHHHHHHH
Confidence 5788887777777766541 2233 3579999999999976543
No 251
>PRK09183 transposase/IS protein; Provisional
Probab=94.22 E-value=0.26 Score=50.00 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=18.3
Q ss_pred HHcCCcEEEEcCCCCcchhhcH
Q 008605 302 VVEGKSCILADQSGSGKTLAYL 323 (560)
Q Consensus 302 il~g~dvlv~apTGSGKTla~l 323 (560)
+..+.++++.+|+|+|||....
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~ 120 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAI 120 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHH
Confidence 4568899999999999996543
No 252
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.19 E-value=0.48 Score=50.70 Aligned_cols=16 Identities=25% Similarity=0.464 Sum_probs=14.5
Q ss_pred CcEEEEcCCCCcchhh
Q 008605 306 KSCILADQSGSGKTLA 321 (560)
Q Consensus 306 ~dvlv~apTGSGKTla 321 (560)
.++++.+|+|+|||..
T Consensus 56 ~~~lI~G~~GtGKT~l 71 (394)
T PRK00411 56 LNVLIYGPPGTGKTTT 71 (394)
T ss_pred CeEEEECCCCCCHHHH
Confidence 5799999999999976
No 253
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=94.18 E-value=0.13 Score=51.04 Aligned_cols=41 Identities=20% Similarity=0.213 Sum_probs=30.3
Q ss_pred CCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEecc
Q 008605 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTAT 461 (560)
Q Consensus 419 ~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSAT 461 (560)
.+.+.+|+||||.|- .+-.+.+++-.+...+.+++.+..-+
T Consensus 112 grhKIiILDEADSMT--~gAQQAlRRtMEiyS~ttRFalaCN~ 152 (333)
T KOG0991|consen 112 GRHKIIILDEADSMT--AGAQQALRRTMEIYSNTTRFALACNQ 152 (333)
T ss_pred CceeEEEeeccchhh--hHHHHHHHHHHHHHcccchhhhhhcc
Confidence 667889999999996 57777888877766666666554433
No 254
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=94.16 E-value=1 Score=49.45 Aligned_cols=73 Identities=16% Similarity=0.160 Sum_probs=43.3
Q ss_pred CCCCChHHHHHHHHHH----HcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHH
Q 008605 287 NFLRPSQIQAMAFPPV----VEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVL 362 (560)
Q Consensus 287 g~~~pt~iQ~~aip~i----l~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~ 362 (560)
-|...+|-|.+-+-.+ -.+-+.++.+|+|+|||.+.+--++...... +....+.||..-|..-+....
T Consensus 13 PY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~--------p~~~~KliYCSRTvpEieK~l 84 (755)
T KOG1131|consen 13 PYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHY--------PDEHRKLIYCSRTVPEIEKAL 84 (755)
T ss_pred CCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhC--------CcccceEEEecCcchHHHHHH
Confidence 3555667776654333 3456899999999999988655555443322 123345666666654444444
Q ss_pred HHHHh
Q 008605 363 SNCRS 367 (560)
Q Consensus 363 ~~l~~ 367 (560)
.+++.
T Consensus 85 ~El~~ 89 (755)
T KOG1131|consen 85 EELKR 89 (755)
T ss_pred HHHHH
Confidence 44443
No 255
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=94.16 E-value=0.18 Score=53.13 Aligned_cols=33 Identities=15% Similarity=0.144 Sum_probs=26.2
Q ss_pred ChHHHHHHHHHHHcC-C---cEEEEcCCCCcchhhcH
Q 008605 291 PSQIQAMAFPPVVEG-K---SCILADQSGSGKTLAYL 323 (560)
Q Consensus 291 pt~iQ~~aip~il~g-~---dvlv~apTGSGKTla~l 323 (560)
.+|||...|..+... + -.++++|.|.|||..+.
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~ 40 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAE 40 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHH
Confidence 479999999887743 2 37899999999997644
No 256
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=94.05 E-value=0.32 Score=47.96 Aligned_cols=43 Identities=21% Similarity=0.214 Sum_probs=25.3
Q ss_pred CccEEEEccccccCCCCChHHHHHHHHhhCCCC-CcEEEEeccCCH
Q 008605 420 NLRCAILDEVDILFNDEDFEVALQSLISSSPVT-AQYLFVTATLPV 464 (560)
Q Consensus 420 ~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~-~Q~IllSATlp~ 464 (560)
..++|||||+|.+- . .....+..++...... ..+++++++.++
T Consensus 90 ~~~~liiDdi~~l~-~-~~~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLD-D-AQQIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcC-c-hHHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 46689999999875 2 2333444444433323 335777777654
No 257
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.03 E-value=0.21 Score=56.74 Aligned_cols=40 Identities=20% Similarity=0.470 Sum_probs=26.7
Q ss_pred CCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEec
Q 008605 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTA 460 (560)
Q Consensus 419 ~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSA 460 (560)
...+++||||+|+|. ...+. .+.+.++.-+.++.||+.|-
T Consensus 123 gr~KViIIDEah~Ls-~~AaN-ALLKTLEEPP~~v~FILaTt 162 (700)
T PRK12323 123 GRFKVYMIDEVHMLT-NHAFN-AMLKTLEEPPEHVKFILATT 162 (700)
T ss_pred CCceEEEEEChHhcC-HHHHH-HHHHhhccCCCCceEEEEeC
Confidence 467899999999997 33343 33344555566777777664
No 258
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.02 E-value=0.29 Score=50.37 Aligned_cols=47 Identities=21% Similarity=0.360 Sum_probs=34.2
Q ss_pred cccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCC-cEEEEcCCCCcchhhcHHHHHHHHHHH
Q 008605 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGK-SCILADQSGSGKTLAYLLPVIQRLRQE 333 (560)
Q Consensus 267 ~~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~-dvlv~apTGSGKTla~llpil~~l~~~ 333 (560)
+.+|++|++++-+.+.+.. .+ =++|.+|||||||.. +..++.++.++
T Consensus 105 i~~~e~LglP~i~~~~~~~-------------------~~GLILVTGpTGSGKSTT-lAamId~iN~~ 152 (353)
T COG2805 105 IPTLEELGLPPIVRELAES-------------------PRGLILVTGPTGSGKSTT-LAAMIDYINKH 152 (353)
T ss_pred CCCHHHcCCCHHHHHHHhC-------------------CCceEEEeCCCCCcHHHH-HHHHHHHHhcc
Confidence 3689999999887773321 12 378999999999976 45677777654
No 259
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=93.98 E-value=0.51 Score=50.45 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=17.9
Q ss_pred CcEEEEcCCCCcchhhcHHHHHHHHH
Q 008605 306 KSCILADQSGSGKTLAYLLPVIQRLR 331 (560)
Q Consensus 306 ~dvlv~apTGSGKTla~llpil~~l~ 331 (560)
.|+++.++||+|||.... -++..+.
T Consensus 43 ~n~~iyG~~GTGKT~~~~-~v~~~l~ 67 (366)
T COG1474 43 SNIIIYGPTGTGKTATVK-FVMEELE 67 (366)
T ss_pred ccEEEECCCCCCHhHHHH-HHHHHHH
Confidence 379999999999997633 3444443
No 260
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.91 E-value=0.27 Score=48.45 Aligned_cols=133 Identities=17% Similarity=0.226 Sum_probs=69.6
Q ss_pred cCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCce-------
Q 008605 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFR------- 376 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~------- 376 (560)
.|..+++.+++|+|||...+-.+...+... +-.++|++ +.+-..++.+.++.++. ++.
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~-----------ge~vlyvs-~ee~~~~l~~~~~s~g~---d~~~~~~~g~ 82 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNF-----------GEKVLYVS-FEEPPEELIENMKSFGW---DLEEYEDSGK 82 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHH-----------T--EEEEE-SSS-HHHHHHHHHTTTS----HHHHHHTTS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhc-----------CCcEEEEE-ecCCHHHHHHHHHHcCC---cHHHHhhcCC
Confidence 346789999999999987655555555441 22477777 44555777777776532 110
Q ss_pred EEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCC---CCChHHHHHHHHhhCCCCC
Q 008605 377 SMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFN---DEDFEVALQSLISSSPVTA 453 (560)
Q Consensus 377 v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~---d~~f~~~l~~Il~~~~~~~ 453 (560)
...+........ .. -..++.+...+....-.. ..+++|||-...+.. ...+...+..+...+....
T Consensus 83 l~~~d~~~~~~~--------~~--~~~~~~l~~~i~~~i~~~-~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~ 151 (226)
T PF06745_consen 83 LKIIDAFPERIG--------WS--PNDLEELLSKIREAIEEL-KPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRG 151 (226)
T ss_dssp EEEEESSGGGST---------T--SCCHHHHHHHHHHHHHHH-TSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTT
T ss_pred EEEEeccccccc--------cc--ccCHHHHHHHHHHHHHhc-CCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCC
Confidence 111110000000 00 123444444333311111 237999999988831 2235566666766665555
Q ss_pred cEEEEeccC
Q 008605 454 QYLFVTATL 462 (560)
Q Consensus 454 Q~IllSATl 462 (560)
.++++++..
T Consensus 152 ~t~llt~~~ 160 (226)
T PF06745_consen 152 VTTLLTSEM 160 (226)
T ss_dssp EEEEEEEEE
T ss_pred CEEEEEEcc
Confidence 566666663
No 261
>PRK12377 putative replication protein; Provisional
Probab=93.89 E-value=0.4 Score=48.40 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=18.2
Q ss_pred CCcEEEEcCCCCcchhhcHHHHHHHHH
Q 008605 305 GKSCILADQSGSGKTLAYLLPVIQRLR 331 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~llpil~~l~ 331 (560)
..++++.+++|+|||... ..+...+.
T Consensus 101 ~~~l~l~G~~GtGKThLa-~AIa~~l~ 126 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLA-AAIGNRLL 126 (248)
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHHH
Confidence 357999999999999643 33444443
No 262
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=93.89 E-value=0.11 Score=60.34 Aligned_cols=71 Identities=15% Similarity=0.136 Sum_probs=52.4
Q ss_pred CChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhh
Q 008605 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (560)
Q Consensus 290 ~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~ 369 (560)
.+++-|.+|+.+ ...+++|.|..|||||.+..--+...+.... ...-++|+|+-|+..|.++.+++.++.
T Consensus 9 ~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~--------v~p~~IL~lTFT~kAA~Em~~Rl~~~~ 78 (721)
T PRK11773 9 SLNDKQREAVAA--PLGNMLVLAGAGSGKTRVLVHRIAWLMQVEN--------ASPYSIMAVTFTNKAAAEMRHRIEQLL 78 (721)
T ss_pred hcCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCC--------CChhHeEeeeccHHHHHHHHHHHHHHh
Confidence 588999998754 3468999999999999885444443332211 123469999999999999999998875
Q ss_pred c
Q 008605 370 K 370 (560)
Q Consensus 370 ~ 370 (560)
.
T Consensus 79 ~ 79 (721)
T PRK11773 79 G 79 (721)
T ss_pred c
Confidence 3
No 263
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=93.87 E-value=0.61 Score=58.80 Aligned_cols=64 Identities=25% Similarity=0.311 Sum_probs=44.6
Q ss_pred CChHHHHHHHHHHHcCC--cEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHH
Q 008605 290 RPSQIQAMAFPPVVEGK--SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQV 361 (560)
Q Consensus 290 ~pt~iQ~~aip~il~g~--dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi 361 (560)
.+++.|.+|+..++.+. -++|.+..|+|||... -.++..+... ....+..++.++||-.-+.++
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l-------~~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQF-RAVMSAVNTL-------PESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHh-------hcccCceEEEECCcHHHHHHH
Confidence 68999999999999764 5789999999999763 2333332211 012345688899998766554
No 264
>PF13173 AAA_14: AAA domain
Probab=93.86 E-value=0.51 Score=42.22 Aligned_cols=38 Identities=21% Similarity=0.381 Sum_probs=28.0
Q ss_pred CccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEecc
Q 008605 420 NLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTAT 461 (560)
Q Consensus 420 ~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSAT 461 (560)
.-.+|+|||+|.+- ++...++.+.... .+.++++.+..
T Consensus 61 ~~~~i~iDEiq~~~---~~~~~lk~l~d~~-~~~~ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLP---DWEDALKFLVDNG-PNIKIILTGSS 98 (128)
T ss_pred CCcEEEEehhhhhc---cHHHHHHHHHHhc-cCceEEEEccc
Confidence 45689999999985 6888888888755 45666665443
No 265
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.81 E-value=0.95 Score=49.22 Aligned_cols=58 Identities=14% Similarity=0.244 Sum_probs=33.4
Q ss_pred CCCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCC
Q 008605 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFP 475 (560)
Q Consensus 418 l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~ 475 (560)
+.+.++++||.+-+.-.+......+..+.........++++|||........+...|.
T Consensus 267 l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~ 324 (420)
T PRK14721 267 LRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQ 324 (420)
T ss_pred hcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhc
Confidence 4567789999874433222233444444333334456788999987665555555553
No 266
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=93.73 E-value=0.44 Score=59.37 Aligned_cols=63 Identities=25% Similarity=0.376 Sum_probs=44.9
Q ss_pred CChHHHHHHHHHHHcC--CcEEEEcCCCCcchhhc--HHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHH
Q 008605 290 RPSQIQAMAFPPVVEG--KSCILADQSGSGKTLAY--LLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVL 362 (560)
Q Consensus 290 ~pt~iQ~~aip~il~g--~dvlv~apTGSGKTla~--llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~ 362 (560)
.+++-|.+|+..++.. +-++|.+..|+|||.+. ++-++..+.+ ..+..++.++||-.-+.++.
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e----------~~g~~V~glAPTgkAa~~L~ 901 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPE----------SERPRVVGLGPTHRAVGEMR 901 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhh----------ccCceEEEEechHHHHHHHH
Confidence 6899999999999865 56889999999999763 2222222211 23457888999987666553
No 267
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.72 E-value=0.14 Score=54.23 Aligned_cols=46 Identities=26% Similarity=0.235 Sum_probs=26.6
Q ss_pred chhHHHHHHHHHhhcCCCCCCCcccCCCchhhhhccccccccCCCCCC
Q 008605 3 GRVEQVMLAKAAASFGLPLASPPLRRNSNTDKLMNKCVLPLLNPNPVG 50 (560)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (560)
|-.+..-+|++-+-.|---.+--++| +.--+||+|.++.-+|.+-+
T Consensus 5 g~~~~ak~ar~~al~G~~d~~~~~~~--g~~~~~~r~l~s~~d~~~~~ 50 (491)
T KOG0738|consen 5 GISENAKLAREYALLGNYDSAGIYYR--GLLYLMNRYLVSTGDPYAQG 50 (491)
T ss_pred hHHHHHHHHHHHHHhcCcchhHHHHH--hHHHHHHHHHhccCCcccch
Confidence 44455566666665553222222233 34568999999887776544
No 268
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=93.66 E-value=0.12 Score=59.71 Aligned_cols=70 Identities=17% Similarity=0.135 Sum_probs=51.7
Q ss_pred CChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhh
Q 008605 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (560)
Q Consensus 290 ~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~ 369 (560)
.+++-|.+|+.+ ...+++|.|..|||||.+..--+...+.... ....++|+|+.|+..|.++.+++..+.
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~--------v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG--------YQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC--------CCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 478889998754 3467899999999999885554544443211 123369999999999999998887664
No 269
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.61 E-value=0.37 Score=53.11 Aligned_cols=42 Identities=26% Similarity=0.398 Sum_probs=27.5
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCC---cEEEEcCCCCcchhhcHH
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGK---SCILADQSGSGKTLAYLL 324 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~---dvlv~apTGSGKTla~ll 324 (560)
.+|+++--.+.++..|.. ++..++ .+|+++|.|+|||.++.+
T Consensus 15 ~~f~dvVGQe~iv~~L~~---------------~i~~~ri~ha~Lf~GP~GtGKTTlAri 59 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQN---------------ALKSGKIGHAYIFFGPRGVGKTTIARI 59 (484)
T ss_pred CCHHHHhChHHHHHHHHH---------------HHHcCCCCeEEEEECCCCCCHHHHHHH
Confidence 567777555656555433 233333 379999999999987543
No 270
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.58 E-value=0.72 Score=52.57 Aligned_cols=42 Identities=19% Similarity=0.408 Sum_probs=29.0
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCC--c-EEEEcCCCCcchhhcHH
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGK--S-CILADQSGSGKTLAYLL 324 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~--d-vlv~apTGSGKTla~ll 324 (560)
++|+++--.+.+++.|.. .+..++ + +|+++|.|+|||.+..+
T Consensus 13 ~~f~dviGQe~vv~~L~~---------------~l~~~rl~ha~Lf~Gp~GvGKTtlAr~ 57 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTN---------------ALTQQRLHHAYLFTGTRGVGKTTVSRI 57 (618)
T ss_pred CCHHHhcCcHHHHHHHHH---------------HHHcCCCCeEEEEECCCCCCHHHHHHH
Confidence 578887657777766654 233332 3 58999999999987654
No 271
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.53 E-value=0.21 Score=50.63 Aligned_cols=118 Identities=13% Similarity=0.101 Sum_probs=56.4
Q ss_pred HHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEe
Q 008605 302 VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVT 381 (560)
Q Consensus 302 il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~ 381 (560)
+..|.-+++.|++|+|||...+-.+.+.+.. .+..++|+.- -+-..++...+..... +..+......
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~-----------~g~~vl~iS~-E~~~~~~~~r~~~~~~-~~~~~~~~~~ 93 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQ-----------HGVRVGTISL-EEPVVRTARRLLGQYA-GKRLHLPDTV 93 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh-----------cCceEEEEEc-ccCHHHHHHHHHHHHh-CCCcccCCcc
Confidence 4566788999999999997544333333222 1445777753 2233444444433211 1111110000
Q ss_pred CCcchHHH---HHHhcCCCcEE-EE-----CHHHHHHHHHhccccCCCccEEEEccccccC
Q 008605 382 GGFRQKTQ---LENLQEGVDVL-IA-----TPGRFMFLIKEGILQLINLRCAILDEVDILF 433 (560)
Q Consensus 382 gg~~~~~~---~~~l~~~~~Il-V~-----TP~~L~~ll~~~~~~l~~l~~LViDEah~ll 433 (560)
-....... ...+.....+. +- |++.+...+..-. .-..+++||||.++.+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~~-~~~~~~~vvID~l~~l~ 153 (271)
T cd01122 94 FIYTLEEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMA-VSHGIQHIIIDNLSIMV 153 (271)
T ss_pred ccccHHHHHHHHHHhcCCCcEEEEcCCCccCHHHHHHHHHHHH-hcCCceEEEECCHHHHh
Confidence 01111111 12222112222 21 5556655554321 12368899999999886
No 272
>PRK04195 replication factor C large subunit; Provisional
Probab=93.51 E-value=0.63 Score=51.59 Aligned_cols=44 Identities=20% Similarity=0.246 Sum_probs=30.8
Q ss_pred cccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHc---CCcEEEEcCCCCcchhhc
Q 008605 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVE---GKSCILADQSGSGKTLAY 322 (560)
Q Consensus 267 ~~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~---g~dvlv~apTGSGKTla~ 322 (560)
..+|.++-.++.....|..+ +..... .+.+++.+|+|+|||...
T Consensus 10 P~~l~dlvg~~~~~~~l~~~------------l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREW------------IESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHH------------HHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 36788888888877776542 011112 467999999999999653
No 273
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=93.51 E-value=0.36 Score=45.38 Aligned_cols=42 Identities=24% Similarity=0.374 Sum_probs=31.5
Q ss_pred CCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccC
Q 008605 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATL 462 (560)
Q Consensus 419 ~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATl 462 (560)
...+++||||||.|. ..-...+.+.++.-+.++.+|++|...
T Consensus 101 ~~~KviiI~~ad~l~--~~a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 101 GKYKVIIIDEADKLT--EEAQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp SSSEEEEEETGGGS---HHHHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred CCceEEEeehHhhhh--HHHHHHHHHHhcCCCCCEEEEEEECCh
Confidence 468899999999996 456677777788877777777776554
No 274
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=93.49 E-value=0.25 Score=55.92 Aligned_cols=48 Identities=10% Similarity=0.228 Sum_probs=28.5
Q ss_pred CCccEEEEccccccCCCCChHHHHHHHHhhC-CCCCcEEEEeccCCHHH
Q 008605 419 INLRCAILDEVDILFNDEDFEVALQSLISSS-PVTAQYLFVTATLPVEI 466 (560)
Q Consensus 419 ~~l~~LViDEah~ll~d~~f~~~l~~Il~~~-~~~~Q~IllSATlp~~v 466 (560)
.++++|||||+|.+.........+-.++..+ ..+.|+|+.|-..|.++
T Consensus 376 ~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL 424 (617)
T PRK14086 376 REMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQL 424 (617)
T ss_pred hcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhh
Confidence 4578999999999874333333343444333 33567776555555443
No 275
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=93.46 E-value=1.1 Score=46.12 Aligned_cols=38 Identities=21% Similarity=0.333 Sum_probs=25.4
Q ss_pred CccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEe
Q 008605 420 NLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459 (560)
Q Consensus 420 ~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllS 459 (560)
..++|||||+|.+. . .....+..+++..+....+|+.+
T Consensus 102 ~~~vviiDe~~~l~-~-~~~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLT-S-DAQQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCC-H-HHHHHHHHHHhcCCCCCeEEEEe
Confidence 46789999999886 2 23345566666666666666654
No 276
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=93.45 E-value=1.1 Score=51.20 Aligned_cols=150 Identities=12% Similarity=0.110 Sum_probs=81.2
Q ss_pred ChHHHHHHHHHHH---cCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHh
Q 008605 291 PSQIQAMAFPPVV---EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS 367 (560)
Q Consensus 291 pt~iQ~~aip~il---~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~ 367 (560)
|+|.=.+=|..++ ..+-.++.+|-|.|||.+..+.+...+.. .+.+++|.+|...-++++++.++.
T Consensus 170 ~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f-----------~Gi~IlvTAH~~~ts~evF~rv~~ 238 (752)
T PHA03333 170 PSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF-----------LEIDIVVQAQRKTMCLTLYNRVET 238 (752)
T ss_pred CChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh-----------cCCeEEEECCChhhHHHHHHHHHH
Confidence 4555555454443 44667889999999998866555433321 246799999999999998888776
Q ss_pred hhcC-------CCCceEEEEeCCcchHHHH--HHhcCC-CcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCCC
Q 008605 368 LSKC-------GVPFRSMVVTGGFRQKTQL--ENLQEG-VDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDED 437 (560)
Q Consensus 368 l~~~-------~~~i~v~~l~gg~~~~~~~--~~l~~~-~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~ 437 (560)
+... ....++....|+...-... .....| ..|...+-. .+...-..+++||||||..+- +
T Consensus 239 ~le~lg~~~~fp~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ars-------~~s~RG~~~DLLIVDEAAfI~-~-- 308 (752)
T PHA03333 239 VVHAYQHKPWFPEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLASS-------PNAARGQNPDLVIVDEAAFVN-P-- 308 (752)
T ss_pred HHHHhccccccCCCceEEEeeCCeeEEEEecCcccccCcceeEEeccc-------CCCcCCCCCCEEEEECcccCC-H--
Confidence 6541 1111222222221100000 000000 122222111 122222356899999999886 3
Q ss_pred hHHHHHHHHhhCC-CCCcEEEEeccCC
Q 008605 438 FEVALQSLISSSP-VTAQYLFVTATLP 463 (560)
Q Consensus 438 f~~~l~~Il~~~~-~~~Q~IllSATlp 463 (560)
..+..|+-.+. .+..++++|.+-.
T Consensus 309 --~~l~aIlP~l~~~~~k~IiISS~~~ 333 (752)
T PHA03333 309 --GALLSVLPLMAVKGTKQIHISSPVD 333 (752)
T ss_pred --HHHHHHHHHHccCCCceEEEeCCCC
Confidence 33344443332 3567777788773
No 277
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.43 E-value=0.77 Score=52.10 Aligned_cols=46 Identities=26% Similarity=0.388 Sum_probs=28.7
Q ss_pred CCCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHH
Q 008605 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466 (560)
Q Consensus 418 l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v 466 (560)
....+++||||+|+|. . +-...+...++..+..+.+|+.+ |-+..+
T Consensus 117 ~~~~KVvIIdev~~Lt-~-~a~naLLk~LEepp~~~~fIl~t-~~~~kl 162 (576)
T PRK14965 117 RSRYKIFIIDEVHMLS-T-NAFNALLKTLEEPPPHVKFIFAT-TEPHKV 162 (576)
T ss_pred cCCceEEEEEChhhCC-H-HHHHHHHHHHHcCCCCeEEEEEe-CChhhh
Confidence 3567899999999886 3 33344555555555566666554 544433
No 278
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=93.38 E-value=0.72 Score=53.77 Aligned_cols=144 Identities=21% Similarity=0.192 Sum_probs=78.5
Q ss_pred CCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhhcC---CCCceEEEEe
Q 008605 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKC---GVPFRSMVVT 381 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~~---~~~i~v~~l~ 381 (560)
|--+|+.-=.|-|||+-.+..+-..++... ..--+||||||...+ .-.++.|.++... ...+.|..+.
T Consensus 696 GsGcILAHcMGLGKTlQVvtflhTvL~c~k--------lg~ktaLvV~PlNt~-~NW~~EFekWm~~~e~~~~leV~eL~ 766 (1567)
T KOG1015|consen 696 GSGCILAHCMGLGKTLQVVTFLHTVLLCDK--------LGFKTALVVCPLNTA-LNWMNEFEKWMEGLEDDEKLEVSELA 766 (1567)
T ss_pred CcchHHHHhhcccceehhhHHHHHHHHhhc--------cCCceEEEEcchHHH-HHHHHHHHHhcccccccccceeehhh
Confidence 345777777899999874433322333221 234579999998654 4466677666541 1245555544
Q ss_pred CCcchHHHHHHh---cCCCcEEEECHHHHHHHHHhcc-------------ccCCCccEEEEccccccCCCC-ChHHHHHH
Q 008605 382 GGFRQKTQLENL---QEGVDVLIATPGRFMFLIKEGI-------------LQLINLRCAILDEVDILFNDE-DFEVALQS 444 (560)
Q Consensus 382 gg~~~~~~~~~l---~~~~~IlV~TP~~L~~ll~~~~-------------~~l~~l~~LViDEah~ll~d~-~f~~~l~~ 444 (560)
.-.........| ...-.|+|.-++.+..+...+. +.-..-++||+||+|.|-++. .....+..
T Consensus 767 ~vkr~e~R~~~L~~W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~lvdpGPD~vVCDE~HiLKNeksa~Skam~~ 846 (1567)
T KOG1015|consen 767 TVKRPEERSYMLQRWQEDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNEKSAVSKAMNS 846 (1567)
T ss_pred hccChHHHHHHHHHHHhcCCEEEEehHHHHHHhcccchhhhHHHHHHHHhccCCCCCeEEecchhhhccchHHHHHHHHH
Confidence 333333333333 2233566666666554432211 112245899999999997422 23344444
Q ss_pred HHhhCCCCCcEEEEeccC
Q 008605 445 LISSSPVTAQYLFVTATL 462 (560)
Q Consensus 445 Il~~~~~~~Q~IllSATl 462 (560)
|.. .+ .|+++.|.
T Consensus 847 irt----kR-RI~LTGTP 859 (1567)
T KOG1015|consen 847 IRT----KR-RIILTGTP 859 (1567)
T ss_pred HHh----he-eEEeecCc
Confidence 432 33 45667775
No 279
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=93.27 E-value=0.6 Score=47.27 Aligned_cols=18 Identities=28% Similarity=0.342 Sum_probs=15.2
Q ss_pred CcEEEEcCCCCcchhhcH
Q 008605 306 KSCILADQSGSGKTLAYL 323 (560)
Q Consensus 306 ~dvlv~apTGSGKTla~l 323 (560)
.++++.+|+|+|||...-
T Consensus 43 ~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 478999999999997643
No 280
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.18 E-value=0.73 Score=52.62 Aligned_cols=39 Identities=26% Similarity=0.378 Sum_probs=25.5
Q ss_pred CCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEe
Q 008605 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459 (560)
Q Consensus 419 ~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllS 459 (560)
...+++||||+|+|. .. -...+..+++..+....+|+.+
T Consensus 117 gk~KV~IIDEVh~LS-~~-A~NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 117 GRFKVYLIDEVHMLS-TH-SFNALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred CCcEEEEEechHhcC-HH-HHHHHHHHHhcCCCCcEEEEEE
Confidence 356899999999886 33 3344555566656666666644
No 281
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=93.12 E-value=0.68 Score=50.61 Aligned_cols=51 Identities=16% Similarity=0.152 Sum_probs=35.8
Q ss_pred cEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHH
Q 008605 422 RCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVE 472 (560)
Q Consensus 422 ~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~ 472 (560)
++||||.+-++..+......+..+.....+..-++.++||...+..+.+..
T Consensus 177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~ 227 (437)
T PRK00771 177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKA 227 (437)
T ss_pred CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHH
Confidence 789999996655344566667777666666677888889887666555544
No 282
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=93.01 E-value=1.7 Score=45.96 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=17.7
Q ss_pred CcEEEEcCCCCcchhhcHHHHHHHH
Q 008605 306 KSCILADQSGSGKTLAYLLPVIQRL 330 (560)
Q Consensus 306 ~dvlv~apTGSGKTla~llpil~~l 330 (560)
.++++.+|+|+|||... -.++..+
T Consensus 41 ~~i~I~G~~GtGKT~l~-~~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT-KYVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHH
Confidence 57999999999999753 3344444
No 283
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=92.96 E-value=0.78 Score=51.85 Aligned_cols=43 Identities=21% Similarity=0.427 Sum_probs=29.9
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC---CcEEEEcCCCCcchhhcHHH
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG---KSCILADQSGSGKTLAYLLP 325 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g---~dvlv~apTGSGKTla~llp 325 (560)
.+|+++--.+.+.+.|... +..+ +-.|+++|.|+|||.++-+.
T Consensus 13 ~~f~~viGq~~v~~~L~~~---------------i~~~~~~hayLf~Gp~GtGKTt~Ak~l 58 (559)
T PRK05563 13 QTFEDVVGQEHITKTLKNA---------------IKQGKISHAYLFSGPRGTGKTSAAKIF 58 (559)
T ss_pred CcHHhccCcHHHHHHHHHH---------------HHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 5788887777777766542 2222 34788999999999876543
No 284
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=92.94 E-value=0.54 Score=55.19 Aligned_cols=68 Identities=10% Similarity=0.037 Sum_probs=54.1
Q ss_pred CCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCH
Q 008605 396 GVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPV 464 (560)
Q Consensus 396 ~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~ 464 (560)
...|+++||..|..-+..+.+.+..+..|||||||++.+ ..-...+-++.+.-.+..-+.+|||....
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~-~~~eaFI~rlyr~~n~~gfIkafSdsP~~ 74 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIE-SSQEAFILRLYRQKNKTGFIKAFSDNPEA 74 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccc-cccHHHHHHHHHHhCCCcceEEecCCCcc
Confidence 368999999999876677789999999999999999984 44444455666666667789999999753
No 285
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.89 E-value=1.7 Score=47.14 Aligned_cols=56 Identities=11% Similarity=0.078 Sum_probs=34.4
Q ss_pred CCccEEEEccccccCCCCChHHHHHHHHhhCC---CCCcEEEEeccCCHHHHHHHHHhC
Q 008605 419 INLRCAILDEVDILFNDEDFEVALQSLISSSP---VTAQYLFVTATLPVEIYNKLVEVF 474 (560)
Q Consensus 419 ~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~---~~~Q~IllSATlp~~v~~~l~~~~ 474 (560)
...++||||=+-++..+......+..++.... +.--++++|||........+...|
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f 356 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY 356 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 45688999987665423334445555555432 224578889999875555555555
No 286
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=92.89 E-value=0.33 Score=59.89 Aligned_cols=123 Identities=18% Similarity=0.210 Sum_probs=75.6
Q ss_pred ChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhhc
Q 008605 291 PSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK 370 (560)
Q Consensus 291 pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~ 370 (560)
.|+-|.+||. ..+++++|.|.-|||||.+..--++..+... ..--++++|+=|+..|.++.+++++...
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~---------~~~~~il~~tFt~~aa~e~~~ri~~~l~ 70 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRG---------VDIDRLLVVTFTNAAAREMKERIEEALQ 70 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC---------CCHhhEEEEeccHHHHHHHHHHHHHHHH
Confidence 5888999986 4688999999999999998665566555321 1113599999999999998888866432
Q ss_pred CCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHH-HHHhccccCC-CccEEEEccccc
Q 008605 371 CGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMF-LIKEGILQLI-NLRCAILDEVDI 431 (560)
Q Consensus 371 ~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~-ll~~~~~~l~-~l~~LViDEah~ 431 (560)
. .+.- --.......+...+ ...-|+|-..+.. +++.....+. +-.+=|.||...
T Consensus 71 ~--~~~~--~p~~~~L~~q~~~~---~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 71 K--ALQQ--EPNSKHLRRQLALL---NTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred H--HHhc--CchhHHHHHHHhhc---cCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 1 0100 00011122222222 4567899988874 4444322211 124456888765
No 287
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=92.89 E-value=0.29 Score=51.27 Aligned_cols=65 Identities=22% Similarity=0.319 Sum_probs=41.2
Q ss_pred HHHHHCCCCCChHHHHHHHHH-HHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHH
Q 008605 281 ESLKRQNFLRPSQIQAMAFPP-VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAEL 357 (560)
Q Consensus 281 ~~L~~~g~~~pt~iQ~~aip~-il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreL 357 (560)
..|.+.|+ +++.|.+.+.. +..+++++++++||||||. ++-.++..+... ...-++++|-.+.||
T Consensus 125 ~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTT-ll~aL~~~~~~~---------~~~~rivtIEd~~El 190 (319)
T PRK13894 125 DQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTT-LVNAIINEMVIQ---------DPTERVFIIEDTGEI 190 (319)
T ss_pred HHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHhhhhc---------CCCceEEEEcCCCcc
Confidence 34444454 45667777765 5567899999999999994 444455443211 123467777777776
No 288
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.86 E-value=0.95 Score=50.78 Aligned_cols=39 Identities=23% Similarity=0.468 Sum_probs=25.6
Q ss_pred CCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEe
Q 008605 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459 (560)
Q Consensus 419 ~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllS 459 (560)
...+++||||+|.|. ...+. .+...++..+....+|+.+
T Consensus 118 ~~~kVvIIDEad~ls-~~a~n-aLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 118 GRFKVYIIDEVHMLS-KSAFN-AMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred CCceEEEEcCcccCC-HHHHH-HHHHHHhCCCCCEEEEEEe
Confidence 457899999999887 32333 3444455556667777765
No 289
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=92.81 E-value=0.24 Score=57.78 Aligned_cols=72 Identities=14% Similarity=0.129 Sum_probs=52.9
Q ss_pred CCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhh
Q 008605 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (560)
Q Consensus 289 ~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l 368 (560)
..+++-|.+|+.+ ...+++|.|..|||||.+..--+...+.... ...-++|+++-|+..|.++.+.+.++
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~--------i~P~~IL~lTFT~kAA~em~~Rl~~~ 72 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKN--------VAPWNILAITFTNKAAREMKERVEKL 72 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCC--------CCHHHeeeeeccHHHHHHHHHHHHHH
Confidence 3588999999864 3468999999999999885554444443211 11236999999999999999988877
Q ss_pred hc
Q 008605 369 SK 370 (560)
Q Consensus 369 ~~ 370 (560)
..
T Consensus 73 ~~ 74 (726)
T TIGR01073 73 LG 74 (726)
T ss_pred hc
Confidence 43
No 290
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=92.65 E-value=0.64 Score=52.87 Aligned_cols=42 Identities=24% Similarity=0.431 Sum_probs=30.5
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCC---cEEEEcCCCCcchhhcHH
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGK---SCILADQSGSGKTLAYLL 324 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~---dvlv~apTGSGKTla~ll 324 (560)
.+|+++--.+.+.+.|.. .+..|+ .+|+++|.|+|||....+
T Consensus 21 ~~f~dliGq~~~v~~L~~---------------~~~~gri~ha~L~~Gp~GvGKTt~Ar~ 65 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTN---------------AFETGRIAQAFMLTGVRGVGKTTTARI 65 (598)
T ss_pred CCHHHhcCcHHHHHHHHH---------------HHHcCCCCceEEEECCCCCCHHHHHHH
Confidence 578888777777776654 233443 589999999999987554
No 291
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=92.64 E-value=0.058 Score=51.61 Aligned_cols=124 Identities=16% Similarity=0.210 Sum_probs=53.8
Q ss_pred EEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHH
Q 008605 309 ILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388 (560)
Q Consensus 309 lv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~ 388 (560)
++.|+-|-|||.+.-+.+...+.. ...+++|.+|+.+-++.+++.+..-... .+++..... ....
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~-----------~~~~I~vtAP~~~~~~~lf~~~~~~l~~-~~~~~~~~~---~~~~ 65 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQK-----------GKIRILVTAPSPENVQTLFEFAEKGLKA-LGYKEEKKK---RIGQ 65 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS----------------EEEE-SS--S-HHHHHCC-----------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHh-----------cCceEEEecCCHHHHHHHHHHHHhhccc-ccccccccc---cccc
Confidence 578999999997754443322211 1246999999999888877766433221 111110000 0000
Q ss_pred HHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCC
Q 008605 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLP 463 (560)
Q Consensus 389 ~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp 463 (560)
.......+..|-...|+.+... ....++||||||=.+- .+.+..+++.. ..++||.|+.
T Consensus 66 ~~~~~~~~~~i~f~~Pd~l~~~-------~~~~DlliVDEAAaIp-----~p~L~~ll~~~----~~vv~stTi~ 124 (177)
T PF05127_consen 66 IIKLRFNKQRIEFVAPDELLAE-------KPQADLLIVDEAAAIP-----LPLLKQLLRRF----PRVVFSTTIH 124 (177)
T ss_dssp -------CCC--B--HHHHCCT-----------SCEEECTGGGS------HHHHHHHHCCS----SEEEEEEEBS
T ss_pred ccccccccceEEEECCHHHHhC-------cCCCCEEEEechhcCC-----HHHHHHHHhhC----CEEEEEeecc
Confidence 0000012356777777766322 2235789999996654 35566665433 3678899984
No 292
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=92.52 E-value=1 Score=44.31 Aligned_cols=52 Identities=19% Similarity=0.321 Sum_probs=31.4
Q ss_pred cCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhh
Q 008605 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l 368 (560)
.|..+++.+++|+|||...+--+.+.+.. +-.++|+.- .+...++.+.++.+
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~------------g~~~~~is~-e~~~~~i~~~~~~~ 70 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD------------GDPVIYVTT-EESRESIIRQAAQF 70 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc------------CCeEEEEEc-cCCHHHHHHHHHHh
Confidence 46778999999999997654333333321 335677763 34445555555444
No 293
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=92.51 E-value=0.8 Score=58.91 Aligned_cols=62 Identities=29% Similarity=0.321 Sum_probs=43.9
Q ss_pred CCChHHHHHHHHHHHcCC--cEEEEcCCCCcchhhcH---HHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHH
Q 008605 289 LRPSQIQAMAFPPVVEGK--SCILADQSGSGKTLAYL---LPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQV 361 (560)
Q Consensus 289 ~~pt~iQ~~aip~il~g~--dvlv~apTGSGKTla~l---lpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi 361 (560)
..+++.|.+|+..++.+. -++|.+..|+|||.... -++.+.+. ..+..++.++||-.-+.++
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~-----------~~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFE-----------SEQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHH-----------hcCCeEEEEeChHHHHHHH
Confidence 368999999999988764 46789999999997641 12222221 1356788899997766554
No 294
>PHA00729 NTP-binding motif containing protein
Probab=92.44 E-value=1 Score=44.85 Aligned_cols=76 Identities=12% Similarity=0.080 Sum_probs=38.5
Q ss_pred CcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCCChH----HHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHH
Q 008605 397 VDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFE----VALQSLISSSPVTAQYLFVTATLPVEIYNKLVE 472 (560)
Q Consensus 397 ~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~----~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~ 472 (560)
...++.+.+.+...+....-....+.+|||||+=.-+....|. ...-.+...+...++++.+...-|.++...+.+
T Consensus 59 ~~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~ 138 (226)
T PHA00729 59 QNSYFFELPDALEKIQDAIDNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLRE 138 (226)
T ss_pred CcEEEEEHHHHHHHHHHHHhcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHh
Confidence 3456666666666554322122346789999943222111111 111122222233556777777767777666655
No 295
>PRK08939 primosomal protein DnaI; Reviewed
Probab=92.43 E-value=1.8 Score=45.13 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=17.9
Q ss_pred CCcEEEEcCCCCcchhhcHHHHHHHH
Q 008605 305 GKSCILADQSGSGKTLAYLLPVIQRL 330 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~llpil~~l 330 (560)
++++++.+++|+|||.... .+...+
T Consensus 156 ~~gl~L~G~~G~GKThLa~-Aia~~l 180 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLA-AIANEL 180 (306)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHH
Confidence 4689999999999996533 333343
No 296
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=92.42 E-value=0.6 Score=41.00 Aligned_cols=14 Identities=36% Similarity=0.551 Sum_probs=12.4
Q ss_pred EEEEcCCCCcchhh
Q 008605 308 CILADQSGSGKTLA 321 (560)
Q Consensus 308 vlv~apTGSGKTla 321 (560)
+++.+|.|+|||..
T Consensus 1 ill~G~~G~GKT~l 14 (132)
T PF00004_consen 1 ILLHGPPGTGKTTL 14 (132)
T ss_dssp EEEESSTTSSHHHH
T ss_pred CEEECcCCCCeeHH
Confidence 68999999999975
No 297
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=92.36 E-value=3.1 Score=41.72 Aligned_cols=33 Identities=21% Similarity=0.274 Sum_probs=22.4
Q ss_pred CChHHHHHHHHHHH----cCC-cEEEEcCCCCcchhhc
Q 008605 290 RPSQIQAMAFPPVV----EGK-SCILADQSGSGKTLAY 322 (560)
Q Consensus 290 ~pt~iQ~~aip~il----~g~-dvlv~apTGSGKTla~ 322 (560)
.+++.+.+++..+. .+. .+++.+|+|+|||...
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH
Confidence 45555666665543 333 5889999999999753
No 298
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=92.20 E-value=0.56 Score=46.48 Aligned_cols=111 Identities=16% Similarity=0.212 Sum_probs=54.2
Q ss_pred cCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEc---CCHHHHHHHHHHHHhhhcCCCCceEEEE
Q 008605 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILA---PTAELASQVLSNCRSLSKCGVPFRSMVV 380 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~---PtreLa~Qi~~~l~~l~~~~~~i~v~~l 380 (560)
.|.-+++.|++|+|||...+--+.+.+.. .+..++|++ |..+++.++.... .. .+..- ..
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~-----------~g~~vly~s~E~~~~~~~~r~~~~~---~~--~~~~~-~~ 74 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKK-----------QGKPVLFFSLEMSKEQLLQRLLASE---SG--ISLSK-LR 74 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh-----------CCCceEEEeCCCCHHHHHHHHHHHh---cC--CCHHH-Hh
Confidence 45668899999999996543333333322 144577777 3444444432211 11 11110 11
Q ss_pred eCCcch------HHHHHHhcCCCcEEE-----ECHHHHHHHHHhccccCCCccEEEEccccccC
Q 008605 381 TGGFRQ------KTQLENLQEGVDVLI-----ATPGRFMFLIKEGILQLINLRCAILDEVDILF 433 (560)
Q Consensus 381 ~gg~~~------~~~~~~l~~~~~IlV-----~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll 433 (560)
.+.... ......+. ...+.| .|++.+...+..-. .-..+++||||=.+.+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~l~~~i~~~~-~~~~~~~vvID~l~~l~ 136 (242)
T cd00984 75 TGSLSDEDWERLAEAIGELK-ELPIYIDDSSSLTVSDIRSRARRLK-KEHGLGLIVIDYLQLMS 136 (242)
T ss_pred cCCCCHHHHHHHHHHHHHHh-cCCEEEeCCCCCCHHHHHHHHHHHH-HhcCCCEEEEcCchhcC
Confidence 111111 00111111 223444 25566665554321 11278999999999875
No 299
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=92.20 E-value=0.4 Score=51.52 Aligned_cols=137 Identities=13% Similarity=0.156 Sum_probs=74.2
Q ss_pred cEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHH-HHHHHHHHHHhhhcCCCCceEEEEeCCcc
Q 008605 307 SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAE-LASQVLSNCRSLSKCGVPFRSMVVTGGFR 385 (560)
Q Consensus 307 dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~Ptre-La~Qi~~~l~~l~~~~~~i~v~~l~gg~~ 385 (560)
-.++.+..|||||.+..+-++..+... ..+.+++++-++.. |..-++..+...... .++....-.....
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~---------~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~-~g~~~~~~~~~~~ 72 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAIN---------KKQQNILAARKVQNSIRDSVFKDIENLLSI-EGINYEFKKSKSS 72 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhc---------CCCcEEEEEehhhhHHHHHHHHHHHHHHHH-cCChhheeecCCc
Confidence 357889999999999888888777653 13567899989877 555566666544321 1121111111110
Q ss_pred hHHHHHHhcC-CCcEEEECH-HHHHHHHHhccccCCCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCC
Q 008605 386 QKTQLENLQE-GVDVLIATP-GRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLP 463 (560)
Q Consensus 386 ~~~~~~~l~~-~~~IlV~TP-~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp 463 (560)
. .+ .+.. +..|++..- +....+ . ....+.++.+|||..+. ...|...+.++ +. +...+.+++|.|++
T Consensus 73 ~--~i-~~~~~g~~i~f~g~~d~~~~i-k----~~~~~~~~~idEa~~~~-~~~~~~l~~rl-r~-~~~~~~i~~t~NP~ 141 (396)
T TIGR01547 73 M--EI-KILNTGKKFIFKGLNDKPNKL-K----SGAGIAIIWFEEASQLT-FEDIKELIPRL-RE-TGGKKFIIFSSNPE 141 (396)
T ss_pred c--EE-EecCCCeEEEeecccCChhHh-h----CcceeeeehhhhhhhcC-HHHHHHHHHHh-hc-cCCccEEEEEcCcC
Confidence 0 00 0112 345555443 221111 1 22336899999999886 33344444342 22 22223578888875
Q ss_pred H
Q 008605 464 V 464 (560)
Q Consensus 464 ~ 464 (560)
.
T Consensus 142 ~ 142 (396)
T TIGR01547 142 S 142 (396)
T ss_pred C
Confidence 3
No 300
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=92.15 E-value=0.43 Score=54.94 Aligned_cols=69 Identities=14% Similarity=0.102 Sum_probs=50.9
Q ss_pred ChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhh
Q 008605 291 PSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (560)
Q Consensus 291 pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~ 369 (560)
+++-|.+++.+ ...+++|.|..|||||.+.+--+...+.... ....++++|+.|+..+.++.+.+.++.
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~--------~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCG--------YKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC--------CCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 67889998754 3568999999999999886555554443211 123468999999999999998887654
No 301
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=92.13 E-value=1.1 Score=49.87 Aligned_cols=42 Identities=21% Similarity=0.418 Sum_probs=29.6
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCC---cEEEEcCCCCcchhhcHH
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGK---SCILADQSGSGKTLAYLL 324 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~---dvlv~apTGSGKTla~ll 324 (560)
.+|.++--.+.+++.|.. ++..++ .+|+++|.|+|||.++.+
T Consensus 18 ~~f~dliGq~~vv~~L~~---------------ai~~~ri~~a~Lf~Gp~G~GKTT~Ari 62 (507)
T PRK06645 18 SNFAELQGQEVLVKVLSY---------------TILNDRLAGGYLLTGIRGVGKTTSARI 62 (507)
T ss_pred CCHHHhcCcHHHHHHHHH---------------HHHcCCCCceEEEECCCCCCHHHHHHH
Confidence 578887666666666543 233443 689999999999987543
No 302
>CHL00181 cbbX CbbX; Provisional
Probab=92.01 E-value=1.4 Score=45.48 Aligned_cols=19 Identities=32% Similarity=0.455 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCCcchhhcH
Q 008605 305 GKSCILADQSGSGKTLAYL 323 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~l 323 (560)
|.++++.+|+|+|||..+-
T Consensus 59 ~~~ill~G~pGtGKT~lAr 77 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVAL 77 (287)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4568999999999998654
No 303
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=92.00 E-value=0.72 Score=54.58 Aligned_cols=40 Identities=15% Similarity=0.032 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHHhC--CCCcEEEEeCchHHHHHHHHHHHhhc
Q 008605 514 LNKKSALLQLIEKS--PVSKTIVFCNKVCFSYKCNNLFGFFS 553 (560)
Q Consensus 514 ~~K~~~L~~lL~~~--~~~ktIIFcnS~~~a~~la~~Lk~l~ 553 (560)
.+|..+|.+.+... .+.++||||+|++.++.+++.|+..+
T Consensus 581 ~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~g 622 (1025)
T PRK12900 581 REKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKR 622 (1025)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcC
Confidence 46888999888653 57899999999999999999997653
No 304
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.97 E-value=0.9 Score=51.71 Aligned_cols=43 Identities=21% Similarity=0.312 Sum_probs=28.3
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC---CcEEEEcCCCCcchhhcHHH
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG---KSCILADQSGSGKTLAYLLP 325 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g---~dvlv~apTGSGKTla~llp 325 (560)
++|+++--.+.+.+.|.+ .+.++ ..+|+.+|.|+|||.+..+-
T Consensus 13 ~sf~dIiGQe~v~~~L~~---------------ai~~~ri~ha~Lf~GPpG~GKTtiAril 58 (624)
T PRK14959 13 QTFAEVAGQETVKAILSR---------------AAQENRVAPAYLFSGTRGVGKTTIARIF 58 (624)
T ss_pred CCHHHhcCCHHHHHHHHH---------------HHHcCCCCceEEEECCCCCCHHHHHHHH
Confidence 567777556666555443 23333 35789999999999876543
No 305
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=91.96 E-value=1 Score=52.09 Aligned_cols=148 Identities=15% Similarity=0.164 Sum_probs=86.3
Q ss_pred HHHCCCCCChHHHHHHHHHHHcCC--cEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHH
Q 008605 283 LKRQNFLRPSQIQAMAFPPVVEGK--SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQ 360 (560)
Q Consensus 283 L~~~g~~~pt~iQ~~aip~il~g~--dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Q 360 (560)
+.....+.+..-|.+.+..++..+ -+++.|.-|=|||.+.=+.+....... ...+++|.+|+.+-++.
T Consensus 207 l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~----------~~~~iiVTAP~~~nv~~ 276 (758)
T COG1444 207 LYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLA----------GSVRIIVTAPTPANVQT 276 (758)
T ss_pred HhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhc----------CCceEEEeCCCHHHHHH
Confidence 444445556666666777777654 478899999999988766663222111 14579999999998888
Q ss_pred HHHHHHhhhcC-CCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCCChH
Q 008605 361 VLSNCRSLSKC-GVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFE 439 (560)
Q Consensus 361 i~~~l~~l~~~-~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~ 439 (560)
++..+.+-... +....+..-..+.... .-.....|=+-.|.... . .-++||||||=.+- .
T Consensus 277 Lf~fa~~~l~~lg~~~~v~~d~~g~~~~----~~~~~~~i~y~~P~~a~---------~-~~DllvVDEAAaIp-----l 337 (758)
T COG1444 277 LFEFAGKGLEFLGYKRKVAPDALGEIRE----VSGDGFRIEYVPPDDAQ---------E-EADLLVVDEAAAIP-----L 337 (758)
T ss_pred HHHHHHHhHHHhCCccccccccccceee----ecCCceeEEeeCcchhc---------c-cCCEEEEehhhcCC-----h
Confidence 77766443221 1111111111010000 00012235555665431 1 16789999997664 4
Q ss_pred HHHHHHHhhCCCCCcEEEEeccCC
Q 008605 440 VALQSLISSSPVTAQYLFVTATLP 463 (560)
Q Consensus 440 ~~l~~Il~~~~~~~Q~IllSATlp 463 (560)
+.+..++... +.++||.|+.
T Consensus 338 plL~~l~~~~----~rv~~sTTIh 357 (758)
T COG1444 338 PLLHKLLRRF----PRVLFSTTIH 357 (758)
T ss_pred HHHHHHHhhc----CceEEEeeec
Confidence 6666666654 4689999984
No 306
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=91.95 E-value=0.49 Score=49.66 Aligned_cols=57 Identities=28% Similarity=0.344 Sum_probs=36.9
Q ss_pred ChHHHHHHHHH-HHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHH
Q 008605 291 PSQIQAMAFPP-VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAEL 357 (560)
Q Consensus 291 pt~iQ~~aip~-il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreL 357 (560)
+++.|...|.. +..+.+++|+++||||||... -.++..+... ...-+++.+=.+.||
T Consensus 129 ~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll-~aL~~~i~~~---------~~~~rivtiEd~~El 186 (323)
T PRK13833 129 MTEAQASVIRSAIDSRLNIVISGGTGSGKTTLA-NAVIAEIVAS---------APEDRLVILEDTAEI 186 (323)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHHhcC---------CCCceEEEecCCccc
Confidence 55667766655 446679999999999999653 3444444211 123367777677776
No 307
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=91.92 E-value=1.4 Score=49.42 Aligned_cols=40 Identities=23% Similarity=0.404 Sum_probs=28.1
Q ss_pred CCCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEe
Q 008605 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459 (560)
Q Consensus 418 l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllS 459 (560)
....+++||||||.|. ..-...+...++..+..+.+|+++
T Consensus 115 ~~~~KVvIIDEad~Lt--~~A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLT--KEAFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCC--HHHHHHHHHHHhhcCCceEEEEEE
Confidence 3567899999999996 333444555666667777777765
No 308
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=91.92 E-value=0.66 Score=47.82 Aligned_cols=45 Identities=27% Similarity=0.401 Sum_probs=30.5
Q ss_pred CCCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHH
Q 008605 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVE 465 (560)
Q Consensus 418 l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~ 465 (560)
....+++||||||.|. ..-...+...++.-+.+..+++.+- -+..
T Consensus 107 ~~~~kviiidead~mt--~~A~nallk~lEep~~~~~~il~~n-~~~~ 151 (325)
T COG0470 107 EGGYKVVIIDEADKLT--EDAANALLKTLEEPPKNTRFILITN-DPSK 151 (325)
T ss_pred CCCceEEEeCcHHHHh--HHHHHHHHHHhccCCCCeEEEEEcC-Chhh
Confidence 3578899999999997 3556666666666666666665544 4433
No 309
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=91.76 E-value=0.54 Score=46.91 Aligned_cols=53 Identities=21% Similarity=0.210 Sum_probs=36.4
Q ss_pred cCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhh
Q 008605 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~ 369 (560)
.|..++|.+++|+|||...+-.+...+. .+-.++|++ +.+-..|+.+.+..++
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~------------~ge~~lyvs-~ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQ------------MGEPGIYVA-LEEHPVQVRRNMAQFG 72 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH------------cCCcEEEEE-eeCCHHHHHHHHHHhC
Confidence 3567999999999999865544444442 244688887 5566777777776654
No 310
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.72 E-value=1.1 Score=47.63 Aligned_cols=39 Identities=23% Similarity=0.489 Sum_probs=24.1
Q ss_pred CCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEe
Q 008605 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459 (560)
Q Consensus 419 ~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllS 459 (560)
...+++||||+|.|. ...+. .+...++..+....+|+.+
T Consensus 118 ~~~kviIIDEa~~l~-~~a~n-aLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 118 SRFKVYLIDEVHMLS-RHSFN-ALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred CCceEEEEEChhhcC-HHHHH-HHHHHHhcCCCCeEEEEEc
Confidence 456799999999986 32232 2334445445566666654
No 311
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.71 E-value=1.8 Score=46.76 Aligned_cols=42 Identities=21% Similarity=0.423 Sum_probs=27.8
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCC---cEEEEcCCCCcchhhcHH
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGK---SCILADQSGSGKTLAYLL 324 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~---dvlv~apTGSGKTla~ll 324 (560)
.+|+++--++.+.+.|.. .+.+|+ .+|+++|.|+|||.++.+
T Consensus 13 ~~~~eiiGq~~~~~~L~~---------------~~~~~~~~ha~lf~Gp~G~GKtt~A~~ 57 (397)
T PRK14955 13 KKFADITAQEHITRTIQN---------------SLRMGRVGHGYIFSGLRGVGKTTAARV 57 (397)
T ss_pred CcHhhccChHHHHHHHHH---------------HHHhCCcceeEEEECCCCCCHHHHHHH
Confidence 567777556666655432 233443 388999999999987654
No 312
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.69 E-value=1.7 Score=48.91 Aligned_cols=40 Identities=20% Similarity=0.282 Sum_probs=27.1
Q ss_pred CCCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEe
Q 008605 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459 (560)
Q Consensus 418 l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllS 459 (560)
....+++||||+|.|. . .-...+...++..+....+|+.+
T Consensus 117 ~g~~kViIIDEa~~ls-~-~a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLS-K-QSFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhcc-H-HHHHHHHHHHhcCCCCceEEEEE
Confidence 3466899999999987 3 33344555566666667777655
No 313
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=91.55 E-value=2.7 Score=42.98 Aligned_cols=55 Identities=15% Similarity=0.116 Sum_probs=36.8
Q ss_pred CCccEEEEccccccCCCCChHHHHHHHHhhCC------CCCcEEEEeccCCHHHHHHHHHh
Q 008605 419 INLRCAILDEVDILFNDEDFEVALQSLISSSP------VTAQYLFVTATLPVEIYNKLVEV 473 (560)
Q Consensus 419 ~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~------~~~Q~IllSATlp~~v~~~l~~~ 473 (560)
...+++|||=+-++..+......++.+.+..+ ..--+++++||...+....+..+
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f 213 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVF 213 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHH
Confidence 45678999988776644455666777766554 45568899999876655544433
No 314
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=91.41 E-value=2.6 Score=44.76 Aligned_cols=40 Identities=20% Similarity=0.336 Sum_probs=27.2
Q ss_pred CCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEec
Q 008605 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTA 460 (560)
Q Consensus 419 ~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSA 460 (560)
...+++||||||.|. ..-...+..+++..+....+|++|.
T Consensus 140 g~~rVviIDeAd~l~--~~aanaLLk~LEEpp~~~~fiLit~ 179 (351)
T PRK09112 140 GNWRIVIIDPADDMN--RNAANAILKTLEEPPARALFILISH 179 (351)
T ss_pred CCceEEEEEchhhcC--HHHHHHHHHHHhcCCCCceEEEEEC
Confidence 457899999999996 3344445566666556666666653
No 315
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.27 E-value=1 Score=50.31 Aligned_cols=41 Identities=22% Similarity=0.322 Sum_probs=26.9
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCC--c-EEEEcCCCCcchhhcH
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGK--S-CILADQSGSGKTLAYL 323 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~--d-vlv~apTGSGKTla~l 323 (560)
.+|+++--.+.+.+.|... +..++ + +|+++|.|+|||.+..
T Consensus 11 ~~~~dvvGq~~v~~~L~~~---------------i~~~~l~ha~Lf~GppGtGKTTlA~ 54 (504)
T PRK14963 11 ITFDEVVGQEHVKEVLLAA---------------LRQGRLGHAYLFSGPRGVGKTTTAR 54 (504)
T ss_pred CCHHHhcChHHHHHHHHHH---------------HHcCCCCeEEEEECCCCCCHHHHHH
Confidence 5677776666665555431 12222 3 5999999999998754
No 316
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=91.22 E-value=1.2 Score=51.42 Aligned_cols=46 Identities=24% Similarity=0.267 Sum_probs=26.5
Q ss_pred CCCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHH
Q 008605 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466 (560)
Q Consensus 418 l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v 466 (560)
....+++||||||.|. . .-...+...++..+..+.+|+++ |-+..+
T Consensus 116 ~g~~KV~IIDEa~~LT-~-~A~NALLKtLEEPP~~tifILaT-te~~KL 161 (725)
T PRK07133 116 QSKYKIYIIDEVHMLS-K-SAFNALLKTLEEPPKHVIFILAT-TEVHKI 161 (725)
T ss_pred cCCCEEEEEEChhhCC-H-HHHHHHHHHhhcCCCceEEEEEc-CChhhh
Confidence 3567899999999986 2 22333344445445555555544 544433
No 317
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=91.16 E-value=0.75 Score=48.36 Aligned_cols=40 Identities=15% Similarity=0.270 Sum_probs=27.9
Q ss_pred CCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEec
Q 008605 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTA 460 (560)
Q Consensus 419 ~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSA 460 (560)
...+++|+|++|.|- ......+..+++..+....+|++|.
T Consensus 112 ~~~kV~iiEp~~~Ld--~~a~naLLk~LEep~~~~~~Ilvth 151 (325)
T PRK08699 112 GGLRVILIHPAESMN--LQAANSLLKVLEEPPPQVVFLLVSH 151 (325)
T ss_pred CCceEEEEechhhCC--HHHHHHHHHHHHhCcCCCEEEEEeC
Confidence 567889999999884 5566666667777665555666544
No 318
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=91.11 E-value=0.61 Score=49.35 Aligned_cols=42 Identities=21% Similarity=0.212 Sum_probs=28.0
Q ss_pred CCCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEecc
Q 008605 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTAT 461 (560)
Q Consensus 418 l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSAT 461 (560)
....+++|||+||.|. ..-...+-+.++.-|.++.+|++|..
T Consensus 130 ~~~~kV~iI~~ae~m~--~~AaNaLLKtLEEPp~~t~fiL~t~~ 171 (342)
T PRK06964 130 RGGARVVVLYPAEALN--VAAANALLKTLEEPPPGTVFLLVSAR 171 (342)
T ss_pred cCCceEEEEechhhcC--HHHHHHHHHHhcCCCcCcEEEEEECC
Confidence 3567899999999997 34444555556665666666666543
No 319
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.99 E-value=1.6 Score=48.28 Aligned_cols=42 Identities=24% Similarity=0.343 Sum_probs=27.5
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC---CcEEEEcCCCCcchhhcHH
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG---KSCILADQSGSGKTLAYLL 324 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g---~dvlv~apTGSGKTla~ll 324 (560)
.+|+++--.+.+...|.. .+.++ ..+|+.+|+|+|||..+.+
T Consensus 11 ~~~~divGq~~i~~~L~~---------------~i~~~~l~~~~Lf~GPpGtGKTTlA~~ 55 (472)
T PRK14962 11 KTFSEVVGQDHVKKLIIN---------------ALKKNSISHAYIFAGPRGTGKTTVARI 55 (472)
T ss_pred CCHHHccCcHHHHHHHHH---------------HHHcCCCCeEEEEECCCCCCHHHHHHH
Confidence 567777666666555432 22333 2379999999999976543
No 320
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=90.83 E-value=0.62 Score=55.83 Aligned_cols=151 Identities=17% Similarity=0.115 Sum_probs=85.1
Q ss_pred CCcEEEEcCCCCcchhhcHHHHHHHHHHHH------hhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEE
Q 008605 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEE------LQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSM 378 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~llpil~~l~~~~------~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~ 378 (560)
|++++..-..|+|||.+-+...+....... ............-+|||+|. ++..|.+.++.+.... .++|.
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~--~lKv~ 450 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISS--LLKVL 450 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhccc--cceEE
Confidence 456777789999999987665554322110 00001111234569999997 5778888888877653 36777
Q ss_pred EEeCCcchHH-HHHHhcCCCcEEEECHHHHHHHHHhc--------------cc----cCCCcc--EEEEccccccCCCCC
Q 008605 379 VVTGGFRQKT-QLENLQEGVDVLIATPGRFMFLIKEG--------------IL----QLINLR--CAILDEVDILFNDED 437 (560)
Q Consensus 379 ~l~gg~~~~~-~~~~l~~~~~IlV~TP~~L~~ll~~~--------------~~----~l~~l~--~LViDEah~ll~d~~ 437 (560)
...|=....- +-..+ -.+|||++|...|..-+... .. .|-.+. .|++|||.++-.
T Consensus 451 ~Y~Girk~~~~~~~el-~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves--- 526 (1394)
T KOG0298|consen 451 LYFGIRKTFWLSPFEL-LQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES--- 526 (1394)
T ss_pred EEechhhhcccCchhh-hccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc---
Confidence 7665432211 11112 34899999999987444221 11 111222 389999987752
Q ss_pred hHHHHHHHHhhCCCCCcEEEEeccCC
Q 008605 438 FEVALQSLISSSPVTAQYLFVTATLP 463 (560)
Q Consensus 438 f~~~l~~Il~~~~~~~Q~IllSATlp 463 (560)
-.....+++..++. .-.-.+|.|+-
T Consensus 527 ssS~~a~M~~rL~~-in~W~VTGTPi 551 (1394)
T KOG0298|consen 527 SSSAAAEMVRRLHA-INRWCVTGTPI 551 (1394)
T ss_pred hHHHHHHHHHHhhh-hceeeecCCch
Confidence 33333444444432 22345688853
No 321
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=90.77 E-value=0.37 Score=54.35 Aligned_cols=44 Identities=30% Similarity=0.452 Sum_probs=36.2
Q ss_pred CChHHHHHHHHHH----HcCCcEEEEcCCCCcchhhcHHHHHHHHHHH
Q 008605 290 RPSQIQAMAFPPV----VEGKSCILADQSGSGKTLAYLLPVIQRLRQE 333 (560)
Q Consensus 290 ~pt~iQ~~aip~i----l~g~dvlv~apTGSGKTla~llpil~~l~~~ 333 (560)
+|+.||.+.+..+ ..|+=-|+.+|||+|||++.+-.++..+...
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~~~ 62 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLRDF 62 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHHHh
Confidence 6899998877654 4788788999999999999888888877654
No 322
>PRK10867 signal recognition particle protein; Provisional
Probab=90.70 E-value=3.5 Score=45.09 Aligned_cols=17 Identities=24% Similarity=0.268 Sum_probs=13.8
Q ss_pred EEEEcCCCCcchhhcHH
Q 008605 308 CILADQSGSGKTLAYLL 324 (560)
Q Consensus 308 vlv~apTGSGKTla~ll 324 (560)
+++++++|+|||....-
T Consensus 103 I~~vG~~GsGKTTtaak 119 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGK 119 (433)
T ss_pred EEEECCCCCcHHHHHHH
Confidence 67899999999976543
No 323
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=90.68 E-value=3.3 Score=45.24 Aligned_cols=18 Identities=28% Similarity=0.292 Sum_probs=14.4
Q ss_pred cEEEEcCCCCcchhhcHH
Q 008605 307 SCILADQSGSGKTLAYLL 324 (560)
Q Consensus 307 dvlv~apTGSGKTla~ll 324 (560)
-+++++++|+|||....-
T Consensus 101 vi~~vG~~GsGKTTtaak 118 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGK 118 (428)
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 367899999999987543
No 324
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.59 E-value=2.6 Score=48.25 Aligned_cols=42 Identities=17% Similarity=0.347 Sum_probs=28.7
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCC---cEEEEcCCCCcchhhcHH
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGK---SCILADQSGSGKTLAYLL 324 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~---dvlv~apTGSGKTla~ll 324 (560)
.+|+++--.+.+.+.|+. .+.+|+ ..|+++|.|+|||.++.+
T Consensus 13 ~~f~eivGQe~i~~~L~~---------------~i~~~ri~ha~Lf~Gp~GvGKttlA~~ 57 (620)
T PRK14954 13 SKFADITAQEHITHTIQN---------------SLRMDRVGHGYIFSGLRGVGKTTAARV 57 (620)
T ss_pred CCHHHhcCcHHHHHHHHH---------------HHHcCCCCeeEEEECCCCCCHHHHHHH
Confidence 567777556666665543 234443 488999999999987654
No 325
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.49 E-value=1.4 Score=50.13 Aligned_cols=42 Identities=24% Similarity=0.495 Sum_probs=28.6
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC---CcEEEEcCCCCcchhhcHH
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG---KSCILADQSGSGKTLAYLL 324 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g---~dvlv~apTGSGKTla~ll 324 (560)
.+|+++--.+.+.+.|.. .+..+ +.+|+++|.|+|||.+..+
T Consensus 13 ~~~~eiiGq~~~~~~L~~---------------~i~~~~i~~a~Lf~Gp~G~GKTtlA~~ 57 (585)
T PRK14950 13 QTFAELVGQEHVVQTLRN---------------AIAEGRVAHAYLFTGPRGVGKTSTARI 57 (585)
T ss_pred CCHHHhcCCHHHHHHHHH---------------HHHhCCCceEEEEECCCCCCHHHHHHH
Confidence 578887667776666543 12233 3468999999999987544
No 326
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=90.49 E-value=2.9 Score=45.55 Aligned_cols=46 Identities=7% Similarity=0.080 Sum_probs=25.0
Q ss_pred CccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHH
Q 008605 420 NLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVE 465 (560)
Q Consensus 420 ~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~ 465 (560)
.+++||||=+-++-.+......+..+.+...+..-+++++||.-.+
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~ 227 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQA 227 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChh
Confidence 3456666666554433334455555555554555566667766533
No 327
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=90.47 E-value=0.91 Score=47.15 Aligned_cols=57 Identities=26% Similarity=0.354 Sum_probs=35.9
Q ss_pred ChHHHHHHHHH-HHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHH
Q 008605 291 PSQIQAMAFPP-VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAEL 357 (560)
Q Consensus 291 pt~iQ~~aip~-il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreL 357 (560)
+++-|...+.. +..+++++|+++||||||... -.++..+... ...-+++++=.+.|+
T Consensus 117 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~al~~~i~~~---------~~~~ri~tiEd~~El 174 (299)
T TIGR02782 117 MTAAQRDVLREAVLARKNILVVGGTGSGKTTLA-NALLAEIAKN---------DPTDRVVIIEDTREL 174 (299)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHhhcc---------CCCceEEEECCchhh
Confidence 44445555544 456679999999999999653 3444444221 123467777777776
No 328
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=90.40 E-value=2.4 Score=43.59 Aligned_cols=18 Identities=28% Similarity=0.326 Sum_probs=14.7
Q ss_pred CcEEEEcCCCCcchhhcH
Q 008605 306 KSCILADQSGSGKTLAYL 323 (560)
Q Consensus 306 ~dvlv~apTGSGKTla~l 323 (560)
+.+++++|||+|||....
T Consensus 195 ~vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLA 212 (282)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457889999999997654
No 329
>PRK11823 DNA repair protein RadA; Provisional
Probab=90.40 E-value=1.4 Score=48.50 Aligned_cols=90 Identities=17% Similarity=0.259 Sum_probs=51.2
Q ss_pred CCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCc
Q 008605 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~ 384 (560)
|.-+++.+++|+|||...+-.+.. +.. .+.+++|+.- .+-..|+...++.++.. ..-..+...
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~-~a~-----------~g~~vlYvs~-Ees~~qi~~ra~rlg~~---~~~l~~~~e- 142 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAAR-LAA-----------AGGKVLYVSG-EESASQIKLRAERLGLP---SDNLYLLAE- 142 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH-HHh-----------cCCeEEEEEc-cccHHHHHHHHHHcCCC---hhcEEEeCC-
Confidence 456889999999999754333322 211 2446888874 45566777766665421 111111111
Q ss_pred chHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccC
Q 008605 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILF 433 (560)
Q Consensus 385 ~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll 433 (560)
...+.+...+.. ...++||||+++.+.
T Consensus 143 -----------------~~l~~i~~~i~~-----~~~~lVVIDSIq~l~ 169 (446)
T PRK11823 143 -----------------TNLEAILATIEE-----EKPDLVVIDSIQTMY 169 (446)
T ss_pred -----------------CCHHHHHHHHHh-----hCCCEEEEechhhhc
Confidence 112333344432 356799999999876
No 330
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=90.39 E-value=0.33 Score=54.80 Aligned_cols=126 Identities=13% Similarity=0.127 Sum_probs=73.5
Q ss_pred CChHHHHHHHHHHHcC--CcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHH-HHHH
Q 008605 290 RPSQIQAMAFPPVVEG--KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVL-SNCR 366 (560)
Q Consensus 290 ~pt~iQ~~aip~il~g--~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~-~~l~ 366 (560)
..+|+|.+.+.++... +.|++..++-+|||.+.+..+...+... ..-+|++.||.++|.+.. ..+.
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~-----------P~~~l~v~Pt~~~a~~~~~~rl~ 84 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQD-----------PGPMLYVQPTDDAAKDFSKERLD 84 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeC-----------CCCEEEEEEcHHHHHHHHHHHHH
Confidence 5688999998887654 5788999999999996555444433322 234899999999998865 4555
Q ss_pred hhhcCCCCceEEEEe---CCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccC
Q 008605 367 SLSKCGVPFRSMVVT---GGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILF 433 (560)
Q Consensus 367 ~l~~~~~~i~v~~l~---gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll 433 (560)
.+......++-.+.- ...........+. +..|.++....- ..+.-..++++++||+|.+-
T Consensus 85 Pmi~~sp~l~~~~~~~~~~~~~~t~~~k~f~-gg~l~~~ga~S~------~~l~s~~~r~~~~DEvD~~p 147 (557)
T PF05876_consen 85 PMIRASPVLRRKLSPSKSRDSGNTILYKRFP-GGFLYLVGANSP------SNLRSRPARYLLLDEVDRYP 147 (557)
T ss_pred HHHHhCHHHHHHhCchhhcccCCchhheecC-CCEEEEEeCCCC------cccccCCcCEEEEechhhcc
Confidence 554422222211111 0111111112222 344444432111 12233468899999999995
No 331
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=90.30 E-value=1.2 Score=51.29 Aligned_cols=149 Identities=20% Similarity=0.275 Sum_probs=79.4
Q ss_pred cEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcch
Q 008605 307 SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386 (560)
Q Consensus 307 dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~ 386 (560)
-.|+.---|-|||..-+.-++..-.... . ........-.||+||+ ++..|....+.+... ...+.+.+++| ..
T Consensus 154 ggIladd~glgkt~~ti~l~l~~~~~~~-~--~~~~~~~kttLivcp~-s~~~qW~~elek~~~-~~~l~v~v~~g--r~ 226 (674)
T KOG1001|consen 154 GGILADDMGLGKTVKTIALILKQKLKSK-E--EDRQKEFKTTLIVCPT-SLLTQWKTELEKVTE-EDKLSIYVYHG--RT 226 (674)
T ss_pred cceEeeccccchHHHHHHHHHhcccCCc-c--hhhccccCceeEecch-HHHHHHHHHHhccCC-ccceEEEEecc--cc
Confidence 3567778899999875443332211110 0 0001234457888886 566777777755544 24566667776 11
Q ss_pred HHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCc--cEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCH
Q 008605 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINL--RCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPV 464 (560)
Q Consensus 387 ~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l--~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~ 464 (560)
. .... ..+.+|+++|++.+.. ..+..+ -.+|+||||.+.+ .... .-...-.+....+-. +|+|.-.
T Consensus 227 k-d~~e-l~~~dVVltTy~il~~------~~l~~i~w~Riildea~~ikn-~~tq--~~~a~~~L~a~~RWc-LtgtPiq 294 (674)
T KOG1001|consen 227 K-DKSE-LNSYDVVLTTYDILKN------SPLVKIKWLRIVLDEAHTIKN-KDTQ--IFKAVCQLDAKYRWC-LTGTPIQ 294 (674)
T ss_pred c-ccch-hcCCceEEeeHHHhhc------ccccceeEEEEEeccccccCC-cchH--hhhhheeeccceeee-ecCChhh
Confidence 1 1111 2457899999998864 222223 3589999999983 2222 222222222233333 4777654
Q ss_pred HHHHHHHHhC
Q 008605 465 EIYNKLVEVF 474 (560)
Q Consensus 465 ~v~~~l~~~~ 474 (560)
.....+...+
T Consensus 295 n~~~~lysl~ 304 (674)
T KOG1001|consen 295 NNLDELYSLF 304 (674)
T ss_pred hhHHHHHHHH
Confidence 4444444433
No 332
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=90.03 E-value=0.83 Score=48.23 Aligned_cols=41 Identities=15% Similarity=0.225 Sum_probs=28.8
Q ss_pred CCCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEec
Q 008605 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTA 460 (560)
Q Consensus 418 l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSA 460 (560)
....+++|||+||.|. ..-...+-++++.-|.+..+|++|.
T Consensus 106 ~g~~kV~iI~~ae~m~--~~AaNaLLKtLEEPp~~t~fiL~t~ 146 (334)
T PRK07993 106 LGGAKVVWLPDAALLT--DAAANALLKTLEEPPENTWFFLACR 146 (334)
T ss_pred cCCceEEEEcchHhhC--HHHHHHHHHHhcCCCCCeEEEEEEC
Confidence 3567899999999996 4455556666666566666666664
No 333
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.00 E-value=1.5 Score=50.28 Aligned_cols=42 Identities=21% Similarity=0.403 Sum_probs=29.0
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC---CcEEEEcCCCCcchhhcHH
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG---KSCILADQSGSGKTLAYLL 324 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g---~dvlv~apTGSGKTla~ll 324 (560)
++|.++--++.+...|... +..+ ..+|+.+|.|+|||.+...
T Consensus 13 ~~f~~liGq~~i~~~L~~~---------------l~~~rl~~a~Lf~Gp~G~GKttlA~~ 57 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNA---------------LISNRIAPAYLFTGPRGTGKTSSARI 57 (620)
T ss_pred CcHhhccChHHHHHHHHHH---------------HHcCCCCceEEEECCCCCChHHHHHH
Confidence 5788877777776666431 1222 4579999999999987543
No 334
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=89.84 E-value=1.3 Score=49.33 Aligned_cols=17 Identities=41% Similarity=0.571 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCCcchhh
Q 008605 305 GKSCILADQSGSGKTLA 321 (560)
Q Consensus 305 g~dvlv~apTGSGKTla 321 (560)
.+.+++.+|+|+|||+.
T Consensus 216 p~GILLyGPPGTGKT~L 232 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLI 232 (512)
T ss_pred CcceEEECCCCCcHHHH
Confidence 46799999999999975
No 335
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=89.78 E-value=2.8 Score=43.10 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCCcchhhc
Q 008605 305 GKSCILADQSGSGKTLAY 322 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~ 322 (560)
+.++++.+|+|+|||.++
T Consensus 58 ~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 458999999999999765
No 336
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=89.70 E-value=1.1 Score=47.01 Aligned_cols=40 Identities=13% Similarity=0.108 Sum_probs=28.6
Q ss_pred CCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEec
Q 008605 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTA 460 (560)
Q Consensus 419 ~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSA 460 (560)
...+++|||+||.|. ..-...+-++++.-|.+..+|++|.
T Consensus 106 g~~KV~iI~~a~~m~--~~AaNaLLKtLEEPp~~~~fiL~t~ 145 (325)
T PRK06871 106 GGNKVVYIQGAERLT--EAAANALLKTLEEPRPNTYFLLQAD 145 (325)
T ss_pred CCceEEEEechhhhC--HHHHHHHHHHhcCCCCCeEEEEEEC
Confidence 467899999999997 3455556666666666676776654
No 337
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=89.67 E-value=5 Score=41.61 Aligned_cols=118 Identities=16% Similarity=0.080 Sum_probs=53.6
Q ss_pred EEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHH-HHHHHH---HHHhhhcCCCCceEEEEeCCc
Q 008605 309 ILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAEL-ASQVLS---NCRSLSKCGVPFRSMVVTGGF 384 (560)
Q Consensus 309 lv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreL-a~Qi~~---~l~~l~~~~~~i~v~~l~gg~ 384 (560)
++.++.|+|||.+..+.++..+... .....++++ +|..- ...+.. .+..+......+.........
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~---------~~~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTR---------PPGRRVIIA-STYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDRK 70 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSS---------SS--EEEEE-ESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SSE
T ss_pred CCcCCccccHHHHHHHHHHHHHhhC---------CCCcEEEEe-cCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCCc
Confidence 4678999999999887777776543 112455555 65554 444332 333332211111111111110
Q ss_pred chHHHHHHhcCCCcEEEECHHHH--HHHHHhccccCCCccEEEEccccccCCCCChHHHHHHHHhh
Q 008605 385 RQKTQLENLQEGVDVLIATPGRF--MFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448 (560)
Q Consensus 385 ~~~~~~~~l~~~~~IlV~TP~~L--~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~l~~Il~~ 448 (560)
. .+.++..|.+.+-..- ..-+. -..+.++++||+-.+. +..+...+......
T Consensus 71 -~-----~~~nG~~i~~~~~~~~~~~~~~~-----G~~~~~i~iDE~~~~~-~~~~~~~~~~~~~~ 124 (384)
T PF03237_consen 71 -I-----ILPNGSRIQFRGADSPDSGDNIR-----GFEYDLIIIDEAAKVP-DDAFSELIRRLRAT 124 (384)
T ss_dssp -E-----EETTS-EEEEES-----SHHHHH-----TS--SEEEEESGGGST-THHHHHHHHHHHHC
T ss_pred -E-----EecCceEEEEecccccccccccc-----ccccceeeeeecccCc-hHHHHHHHHhhhhc
Confidence 0 0135566777664321 11222 1467799999998886 44455555444443
No 338
>PF05729 NACHT: NACHT domain
Probab=89.65 E-value=2.4 Score=38.62 Aligned_cols=41 Identities=20% Similarity=0.266 Sum_probs=25.7
Q ss_pred EEEEccccccCCCCC------hHHHHHHHHhh-CCCCCcEEEEeccCC
Q 008605 423 CAILDEVDILFNDED------FEVALQSLISS-SPVTAQYLFVTATLP 463 (560)
Q Consensus 423 ~LViDEah~ll~d~~------f~~~l~~Il~~-~~~~~Q~IllSATlp 463 (560)
+||||-+|.+..... +...+..++.. .+++.++++.|.+-.
T Consensus 84 llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~ 131 (166)
T PF05729_consen 84 LLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRA 131 (166)
T ss_pred EEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCCh
Confidence 489999999884222 33445555555 456777777665543
No 339
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=89.57 E-value=7.4 Score=43.15 Aligned_cols=22 Identities=27% Similarity=0.265 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCCcchhhcHHHH
Q 008605 305 GKSCILADQSGSGKTLAYLLPV 326 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~llpi 326 (560)
|.-+.+++|||+|||.....-+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA 277 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLA 277 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHH
Confidence 3457789999999998754333
No 340
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=89.57 E-value=1.7 Score=46.97 Aligned_cols=45 Identities=20% Similarity=0.367 Sum_probs=27.6
Q ss_pred CCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHH
Q 008605 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466 (560)
Q Consensus 419 ~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v 466 (560)
...+++||||+|.|. ......+..+++.-+.+..+|+.+.+ +..+
T Consensus 116 ~~~kViiIDead~m~--~~aanaLLk~LEep~~~~~fIL~a~~-~~~l 160 (394)
T PRK07940 116 GRWRIVVIEDADRLT--ERAANALLKAVEEPPPRTVWLLCAPS-PEDV 160 (394)
T ss_pred CCcEEEEEechhhcC--HHHHHHHHHHhhcCCCCCeEEEEECC-hHHC
Confidence 467889999999996 33334455555555555555554444 4443
No 341
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=89.52 E-value=0.64 Score=44.45 Aligned_cols=47 Identities=19% Similarity=0.374 Sum_probs=27.0
Q ss_pred HHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHH
Q 008605 302 VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQV 361 (560)
Q Consensus 302 il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi 361 (560)
+..++++++.+++|+|||..+. .+...+... +..++|+ .+.+|+.++
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~-ai~~~~~~~-----------g~~v~f~-~~~~L~~~l 90 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAV-AIANEAIRK-----------GYSVLFI-TASDLLDEL 90 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHH-HHHHHHHHT-----------T--EEEE-EHHHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHHH-HHHHHhccC-----------CcceeEe-ecCceeccc
Confidence 3467899999999999997643 344444432 2335554 555665554
No 342
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=89.36 E-value=1.1 Score=52.09 Aligned_cols=42 Identities=19% Similarity=0.338 Sum_probs=37.5
Q ss_pred ccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCC
Q 008605 421 LRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLP 463 (560)
Q Consensus 421 l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp 463 (560)
--++|+|+.|.+. +...-..++.++++.|.+.+.++.|=+-|
T Consensus 130 pl~LVlDDyHli~-~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 130 PLYLVLDDYHLIS-DPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred ceEEEeccccccC-cccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 3589999999998 77888999999999999999999988765
No 343
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=89.35 E-value=1.2 Score=46.68 Aligned_cols=42 Identities=21% Similarity=0.286 Sum_probs=28.8
Q ss_pred CCCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEecc
Q 008605 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTAT 461 (560)
Q Consensus 418 l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSAT 461 (560)
....+++|||+||.|. ..-...+-+.++.-|.+..+|++|..
T Consensus 106 ~~~~kV~iI~~ae~m~--~~AaNaLLKtLEEPp~~t~fiL~t~~ 147 (319)
T PRK06090 106 LNGYRLFVIEPADAMN--ESASNALLKTLEEPAPNCLFLLVTHN 147 (319)
T ss_pred cCCceEEEecchhhhC--HHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 4567899999999996 34555555666665666666666554
No 344
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=89.22 E-value=3.7 Score=46.67 Aligned_cols=42 Identities=19% Similarity=0.336 Sum_probs=28.9
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC---CcEEEEcCCCCcchhhcHH
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG---KSCILADQSGSGKTLAYLL 324 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g---~dvlv~apTGSGKTla~ll 324 (560)
.+|.++--++.+.+.|.. .+..+ +-+|+.||.|+|||..+..
T Consensus 13 ~~F~dIIGQe~iv~~L~~---------------aI~~~rl~hA~Lf~GP~GvGKTTlA~~ 57 (605)
T PRK05896 13 HNFKQIIGQELIKKILVN---------------AILNNKLTHAYIFSGPRGIGKTSIAKI 57 (605)
T ss_pred CCHHHhcCcHHHHHHHHH---------------HHHcCCCCceEEEECCCCCCHHHHHHH
Confidence 578887667777766643 22233 3488999999999976543
No 345
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=89.17 E-value=6.1 Score=36.96 Aligned_cols=55 Identities=20% Similarity=0.164 Sum_probs=32.1
Q ss_pred CCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHh
Q 008605 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEV 473 (560)
Q Consensus 419 ~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~ 473 (560)
...+++|+|....+.-+......+..+........-++.++|....+..+.+.+.
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~ 135 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAF 135 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHH
Confidence 3567899999876532223444444444444455567778887666655554444
No 346
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=89.10 E-value=2.4 Score=46.04 Aligned_cols=141 Identities=13% Similarity=0.140 Sum_probs=64.3
Q ss_pred cCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEE-eC
Q 008605 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV-TG 382 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l-~g 382 (560)
.|.=+++.|++|+|||...+--+.+.... .+..++|++ ...-..|+..++-... .++....+ .|
T Consensus 193 ~g~liviag~pg~GKT~~al~ia~~~a~~-----------~g~~v~~fS-lEm~~~~l~~Rl~~~~---~~v~~~~~~~~ 257 (421)
T TIGR03600 193 KGDLIVIGARPSMGKTTLALNIAENVALR-----------EGKPVLFFS-LEMSAEQLGERLLASK---SGINTGNIRTG 257 (421)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHh-----------CCCcEEEEE-CCCCHHHHHHHHHHHH---cCCCHHHHhcC
Confidence 45567889999999996544333333222 133466665 2223333333332211 11111111 22
Q ss_pred CcchHH------HHHHhcCCCcEEEE-----CHHHHHHHHHhccccCCCccEEEEccccccCCC--CChHHHHHHHHhhC
Q 008605 383 GFRQKT------QLENLQEGVDVLIA-----TPGRFMFLIKEGILQLINLRCAILDEVDILFND--EDFEVALQSLISSS 449 (560)
Q Consensus 383 g~~~~~------~~~~l~~~~~IlV~-----TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d--~~f~~~l~~Il~~~ 449 (560)
.....+ ....+. +.++.|. |++.+...+++-......+++||||=.+.|... ......+..|.+.+
T Consensus 258 ~l~~~~~~~~~~~~~~l~-~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~~~~~~~~~~~~~i~~~L 336 (421)
T TIGR03600 258 RFNDSDFNRLLNAVDRLS-EKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAPTRGRDRNEELGGISRGL 336 (421)
T ss_pred CCCHHHHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCHHHHHHHHHHHH
Confidence 222111 111222 2345553 344555444432212235889999999988631 22333333443322
Q ss_pred -----CCCCcEEEEec
Q 008605 450 -----PVTAQYLFVTA 460 (560)
Q Consensus 450 -----~~~~Q~IllSA 460 (560)
..++.++++|.
T Consensus 337 k~lAke~~i~Vi~lsQ 352 (421)
T TIGR03600 337 KALAKELDVPVVLLAQ 352 (421)
T ss_pred HHHHHHhCCcEEEecc
Confidence 13566666654
No 347
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=88.92 E-value=0.66 Score=48.72 Aligned_cols=81 Identities=22% Similarity=0.221 Sum_probs=52.4
Q ss_pred CCccccccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCC-cEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCC
Q 008605 262 GDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGK-SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSK 340 (560)
Q Consensus 262 ~~~~~~~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~-dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~ 340 (560)
++.+++..|..-.|.- ..-..|...++-|...+..+..++ |+|+++.||||||... -.++..+
T Consensus 134 Gp~lsIRKf~k~~ltl-----~dli~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTlL-Nal~~~i---------- 197 (355)
T COG4962 134 GPTLSIRKFPKIKLTL-----LDLIIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTLL-NALSGFI---------- 197 (355)
T ss_pred CCcccccccccccccH-----HHHHHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHHH-HHHHhcC----------
Confidence 4555666665544432 222356789999999988877665 9999999999999641 1111111
Q ss_pred CCCCCCEEEEEcCCHHHHHH
Q 008605 341 STSGSPRVVILAPTAELASQ 360 (560)
Q Consensus 341 ~~~~~~~aLil~PtreLa~Q 360 (560)
...-++|.+=-|.||-.+
T Consensus 198 --~~~eRvItiEDtaELql~ 215 (355)
T COG4962 198 --DSDERVITIEDTAELQLA 215 (355)
T ss_pred --CCcccEEEEeehhhhccC
Confidence 122278888888887433
No 348
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=88.91 E-value=5.3 Score=45.27 Aligned_cols=42 Identities=26% Similarity=0.491 Sum_probs=28.1
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC---CcEEEEcCCCCcchhhcHH
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG---KSCILADQSGSGKTLAYLL 324 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g---~dvlv~apTGSGKTla~ll 324 (560)
.+|+++--.+.+.+.|.. .+.++ +-.|+.+|.|+|||.++.+
T Consensus 13 ~~f~diiGqe~iv~~L~~---------------~i~~~~i~hayLf~Gp~G~GKTt~Ar~ 57 (563)
T PRK06647 13 RDFNSLEGQDFVVETLKH---------------SIESNKIANAYIFSGPRGVGKTSSARA 57 (563)
T ss_pred CCHHHccCcHHHHHHHHH---------------HHHcCCCCeEEEEECCCCCCHHHHHHH
Confidence 567777666666665543 12233 2478999999999987554
No 349
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=88.91 E-value=3.5 Score=45.37 Aligned_cols=42 Identities=21% Similarity=0.335 Sum_probs=28.3
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC---CcEEEEcCCCCcchhhcHH
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG---KSCILADQSGSGKTLAYLL 324 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g---~dvlv~apTGSGKTla~ll 324 (560)
.+|+++--++.+...|.. .+..+ +.+|+.+|.|+|||.+...
T Consensus 14 ~~~~diiGq~~~v~~L~~---------------~i~~~~i~ha~Lf~Gp~G~GKtt~A~~ 58 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKN---------------ALRFNRAAHAYLFSGIRGTGKTTLARI 58 (451)
T ss_pred CCHHHhcCcHHHHHHHHH---------------HHHcCCCceEEEEEcCCCCCHHHHHHH
Confidence 578887667766665543 12233 3478999999999987543
No 350
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=88.91 E-value=2.7 Score=41.56 Aligned_cols=51 Identities=16% Similarity=0.257 Sum_probs=31.9
Q ss_pred CCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhh
Q 008605 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l 368 (560)
|.-+++.+++|+|||....--+...+. .+.+++|+.-- +-..++.+.+..+
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~------------~g~~~~y~~~e-~~~~~~~~~~~~~ 75 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALK------------QGKKVYVITTE-NTSKSYLKQMESV 75 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHh------------CCCEEEEEEcC-CCHHHHHHHHHHC
Confidence 456889999999999765443333332 24467777643 3445666666655
No 351
>PRK05973 replicative DNA helicase; Provisional
Probab=88.64 E-value=2.6 Score=42.32 Aligned_cols=55 Identities=22% Similarity=0.296 Sum_probs=34.8
Q ss_pred HHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhh
Q 008605 302 VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (560)
Q Consensus 302 il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~ 369 (560)
+..|.-++|.|++|+|||...+-.+.+.+. .+..++|++- .+-..|+.+.+..++
T Consensus 61 l~~Gsl~LIaG~PG~GKT~lalqfa~~~a~------------~Ge~vlyfSl-Ees~~~i~~R~~s~g 115 (237)
T PRK05973 61 LKPGDLVLLGARPGHGKTLLGLELAVEAMK------------SGRTGVFFTL-EYTEQDVRDRLRALG 115 (237)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHHh------------cCCeEEEEEE-eCCHHHHHHHHHHcC
Confidence 344566889999999999765544443332 1345777753 333567777777663
No 352
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=88.54 E-value=1.5 Score=48.35 Aligned_cols=138 Identities=18% Similarity=0.274 Sum_probs=0.0
Q ss_pred ccccCCCCCccccccccccC---CCHHHHHHHHHC---CCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHH
Q 008605 255 RHKYSADGDFFSRKSFKELG---CSDYMIESLKRQ---NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328 (560)
Q Consensus 255 ~~~~~~~~~~~~~~sF~~l~---L~~~ll~~L~~~---g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~ 328 (560)
+.+...+.-+.+.-.|++|| |..+.-..+++. ..--|.-+-+-.++++ +-+|+.+|+|+|||+
T Consensus 203 ~~k~~~n~ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HV---KGiLLyGPPGTGKTL-------- 271 (744)
T KOG0741|consen 203 KTKPASNSIINPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHV---KGILLYGPPGTGKTL-------- 271 (744)
T ss_pred cccchhccccCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccce---eeEEEECCCCCChhH--------
Q ss_pred HHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHH
Q 008605 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFM 408 (560)
Q Consensus 329 ~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~ 408 (560)
+|+|+-..+..- -.=||--|+.|.
T Consensus 272 ----------------------------iARqIGkMLNAr----------------------------ePKIVNGPeIL~ 295 (744)
T KOG0741|consen 272 ----------------------------IARQIGKMLNAR----------------------------EPKIVNGPEILN 295 (744)
T ss_pred ----------------------------HHHHHHHHhcCC----------------------------CCcccCcHHHHH
Q ss_pred HHH-----------------HhccccCCCccEEEEccccccCCCCC--------hHHHHHHHHhhCC-----CCCcEEEE
Q 008605 409 FLI-----------------KEGILQLINLRCAILDEVDILFNDED--------FEVALQSLISSSP-----VTAQYLFV 458 (560)
Q Consensus 409 ~ll-----------------~~~~~~l~~l~~LViDEah~ll~d~~--------f~~~l~~Il~~~~-----~~~Q~Ill 458 (560)
.+. .+..-.-+.+..+|+||+|.+....+ .-..+..++..+. .+.-+|+|
T Consensus 296 KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGM 375 (744)
T KOG0741|consen 296 KYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGM 375 (744)
T ss_pred HhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEec
Q ss_pred e
Q 008605 459 T 459 (560)
Q Consensus 459 S 459 (560)
+
T Consensus 376 T 376 (744)
T KOG0741|consen 376 T 376 (744)
T ss_pred c
No 353
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=88.53 E-value=2.2 Score=47.83 Aligned_cols=93 Identities=19% Similarity=0.183 Sum_probs=59.3
Q ss_pred ccCCCHHHH-HHHHHCCCCCCh----HHHHHHHHHHHc--CCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCC
Q 008605 272 ELGCSDYMI-ESLKRQNFLRPS----QIQAMAFPPVVE--GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSG 344 (560)
Q Consensus 272 ~l~L~~~ll-~~L~~~g~~~pt----~iQ~~aip~il~--g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~ 344 (560)
+.++.++++ ..|.+.--.++. .+|.+==..+.. ++-++|++..|||||.+++--+...+...+ ....
T Consensus 186 d~~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R------~~l~ 259 (747)
T COG3973 186 DTGGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYR------GPLQ 259 (747)
T ss_pred CCchHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccc------cccc
Confidence 445666655 556665444432 245444334443 345889999999999886654444443321 1111
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHhhhc
Q 008605 345 SPRVVILAPTAELASQVLSNCRSLSK 370 (560)
Q Consensus 345 ~~~aLil~PtreLa~Qi~~~l~~l~~ 370 (560)
...+||+.|.+-+..-+.+++-+|+.
T Consensus 260 ~k~vlvl~PN~vFleYis~VLPeLGe 285 (747)
T COG3973 260 AKPVLVLGPNRVFLEYISRVLPELGE 285 (747)
T ss_pred cCceEEEcCcHHHHHHHHHhchhhcc
Confidence 22399999999999999999998875
No 354
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=88.53 E-value=1.3 Score=44.17 Aligned_cols=53 Identities=15% Similarity=0.176 Sum_probs=33.0
Q ss_pred HcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhh
Q 008605 303 VEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (560)
Q Consensus 303 l~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l 368 (560)
..|.-+++.+++|+|||...+-.+.. +.. .+.+++|++ +.+-..+..+.+..+
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~-~~~-----------~g~~~~yi~-~e~~~~~~~~~~~~~ 74 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYG-FLQ-----------NGYSVSYVS-TQLTTTEFIKQMMSL 74 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH-HHh-----------CCCcEEEEe-CCCCHHHHHHHHHHh
Confidence 44677899999999999764333332 221 234678888 444445666665544
No 355
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=88.51 E-value=0.35 Score=51.81 Aligned_cols=48 Identities=23% Similarity=0.382 Sum_probs=37.4
Q ss_pred cEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhh
Q 008605 307 SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (560)
Q Consensus 307 dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l 368 (560)
+++++|+||||||.++++|-+... ...+||+=|--|+........+..
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~--------------~~s~vv~D~Kge~~~~t~~~r~~~ 48 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW--------------PGSVVVLDPKGENFELTSEHRRAL 48 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC--------------CCCEEEEccchhHHHHHHHHHHHc
Confidence 579999999999999998876432 234888888889988777666554
No 356
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=88.28 E-value=1.4 Score=47.13 Aligned_cols=16 Identities=25% Similarity=0.549 Sum_probs=14.9
Q ss_pred CcEEEEcCCCCcchhh
Q 008605 306 KSCILADQSGSGKTLA 321 (560)
Q Consensus 306 ~dvlv~apTGSGKTla 321 (560)
+|+++.+|+|+|||++
T Consensus 385 RNilfyGPPGTGKTm~ 400 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMF 400 (630)
T ss_pred hheeeeCCCCCCchHH
Confidence 6999999999999976
No 357
>PRK13342 recombination factor protein RarA; Reviewed
Probab=88.11 E-value=2.8 Score=45.50 Aligned_cols=17 Identities=41% Similarity=0.429 Sum_probs=14.5
Q ss_pred CcEEEEcCCCCcchhhc
Q 008605 306 KSCILADQSGSGKTLAY 322 (560)
Q Consensus 306 ~dvlv~apTGSGKTla~ 322 (560)
.++++.+|+|+|||...
T Consensus 37 ~~ilL~GppGtGKTtLA 53 (413)
T PRK13342 37 SSMILWGPPGTGKTTLA 53 (413)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 37999999999999754
No 358
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=88.08 E-value=4.5 Score=42.68 Aligned_cols=44 Identities=18% Similarity=0.345 Sum_probs=28.5
Q ss_pred HHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHH
Q 008605 301 PVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAEL 357 (560)
Q Consensus 301 ~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreL 357 (560)
++..+++++|+++||||||.. +-.++..+- ..-+++.+=-+.||
T Consensus 156 ~v~~~~nili~G~tgSGKTTl-l~aL~~~ip------------~~~ri~tiEd~~El 199 (332)
T PRK13900 156 AVISKKNIIISGGTSTGKTTF-TNAALREIP------------AIERLITVEDAREI 199 (332)
T ss_pred HHHcCCcEEEECCCCCCHHHH-HHHHHhhCC------------CCCeEEEecCCCcc
Confidence 355678999999999999964 334444332 12356665555555
No 359
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=87.90 E-value=1.5 Score=47.34 Aligned_cols=19 Identities=21% Similarity=0.393 Sum_probs=16.6
Q ss_pred HcCCcEEEEcCCCCcchhh
Q 008605 303 VEGKSCILADQSGSGKTLA 321 (560)
Q Consensus 303 l~g~dvlv~apTGSGKTla 321 (560)
-.|+-+++.+|+|+|||..
T Consensus 166 g~Gq~~~IvG~~g~GKTtL 184 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVL 184 (415)
T ss_pred CCCCEEEEECCCCCChhHH
Confidence 3688899999999999964
No 360
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=87.87 E-value=0.72 Score=48.87 Aligned_cols=46 Identities=28% Similarity=0.363 Sum_probs=30.4
Q ss_pred HHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHH
Q 008605 300 PPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELA 358 (560)
Q Consensus 300 p~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa 358 (560)
-++..+++++|+++||||||.. +-.++..+. ...+++.+=.+.||.
T Consensus 157 ~~v~~~~nilI~G~tGSGKTTl-l~aLl~~i~------------~~~rivtiEd~~El~ 202 (344)
T PRK13851 157 ACVVGRLTMLLCGPTGSGKTTM-SKTLISAIP------------PQERLITIEDTLELV 202 (344)
T ss_pred HHHHcCCeEEEECCCCccHHHH-HHHHHcccC------------CCCCEEEECCCcccc
Confidence 3455788999999999999964 233333321 233567777777763
No 361
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=87.75 E-value=0.46 Score=52.20 Aligned_cols=49 Identities=18% Similarity=0.402 Sum_probs=38.3
Q ss_pred CcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhh
Q 008605 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (560)
Q Consensus 306 ~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l 368 (560)
.+++++||||||||..|++|.+-.. ..-+||.=|--||...+...+++.
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~--------------~~s~iV~D~KgEl~~~t~~~r~~~ 93 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNY--------------PGSMIVTDPKGELYEKTAGYRKKR 93 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhc--------------cCCEEEEECCCcHHHHHHHHHHHC
Confidence 5799999999999999999976321 114788888889888877766654
No 362
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=87.74 E-value=3.6 Score=43.26 Aligned_cols=21 Identities=14% Similarity=0.289 Sum_probs=18.0
Q ss_pred HHHcCCcEEEEcCCCCcchhh
Q 008605 301 PVVEGKSCILADQSGSGKTLA 321 (560)
Q Consensus 301 ~il~g~dvlv~apTGSGKTla 321 (560)
.+..++++++.+++|+|||..
T Consensus 60 ~l~~~~~ilL~G~pGtGKTtl 80 (327)
T TIGR01650 60 GFAYDRRVMVQGYHGTGKSTH 80 (327)
T ss_pred HHhcCCcEEEEeCCCChHHHH
Confidence 455688999999999999975
No 363
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.54 E-value=3.1 Score=44.22 Aligned_cols=41 Identities=15% Similarity=0.297 Sum_probs=28.5
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC---CcEEEEcCCCCcchhhcH
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG---KSCILADQSGSGKTLAYL 323 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g---~dvlv~apTGSGKTla~l 323 (560)
.+|+++-.++.+.+.|.. .+.+| +.+++++|.|+|||....
T Consensus 14 ~~~~~iig~~~~~~~l~~---------------~i~~~~~~~~~L~~G~~G~GKt~~a~ 57 (367)
T PRK14970 14 QTFDDVVGQSHITNTLLN---------------AIENNHLAQALLFCGPRGVGKTTCAR 57 (367)
T ss_pred CcHHhcCCcHHHHHHHHH---------------HHHcCCCCeEEEEECCCCCCHHHHHH
Confidence 578888777777666543 12223 368899999999996543
No 364
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=87.49 E-value=5.3 Score=42.68 Aligned_cols=46 Identities=15% Similarity=0.165 Sum_probs=31.3
Q ss_pred CCccEEEEccccccCCCCChHHHHHHHHhhC-CCCCcEEEEeccCCHHH
Q 008605 419 INLRCAILDEVDILFNDEDFEVALQSLISSS-PVTAQYLFVTATLPVEI 466 (560)
Q Consensus 419 ~~l~~LViDEah~ll~d~~f~~~l~~Il~~~-~~~~Q~IllSATlp~~v 466 (560)
....+|.+||+|.- |-+-...+.++++.+ ..++-+|..|-+.|.++
T Consensus 126 ~~~~lLcfDEF~V~--DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 126 KESRLLCFDEFQVT--DIADAMILKRLFEALFKRGVVLVATSNRPPEDL 172 (362)
T ss_pred hcCCEEEEeeeecc--chhHHHHHHHHHHHHHHCCCEEEecCCCChHHH
Confidence 35668999999854 445556666676654 45677777777777654
No 365
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=87.45 E-value=2.9 Score=44.67 Aligned_cols=42 Identities=21% Similarity=0.321 Sum_probs=27.6
Q ss_pred CCCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEecc
Q 008605 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTAT 461 (560)
Q Consensus 418 l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSAT 461 (560)
....+++||||+|.|- ..-...+..+++..+..+.+|++|..
T Consensus 139 ~~~~kVviIDead~m~--~~aanaLLK~LEepp~~~~~IL~t~~ 180 (365)
T PRK07471 139 EGGWRVVIVDTADEMN--ANAANALLKVLEEPPARSLFLLVSHA 180 (365)
T ss_pred cCCCEEEEEechHhcC--HHHHHHHHHHHhcCCCCeEEEEEECC
Confidence 3467789999999985 34444555556665556666665554
No 366
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=87.44 E-value=4 Score=38.90 Aligned_cols=40 Identities=15% Similarity=0.307 Sum_probs=24.0
Q ss_pred CCCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEe
Q 008605 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459 (560)
Q Consensus 418 l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllS 459 (560)
....+++||||+|.|. . .....+...++..+...-+|+++
T Consensus 94 ~~~~kviiide~~~l~-~-~~~~~Ll~~le~~~~~~~~il~~ 133 (188)
T TIGR00678 94 ESGRRVVIIEDAERMN-E-AAANALLKTLEEPPPNTLFILIT 133 (188)
T ss_pred cCCeEEEEEechhhhC-H-HHHHHHHHHhcCCCCCeEEEEEE
Confidence 4567899999999996 2 22333444445544445555543
No 367
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=87.25 E-value=5.9 Score=44.81 Aligned_cols=130 Identities=15% Similarity=0.183 Sum_probs=80.9
Q ss_pred HcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhhc--CCCCceEEEE
Q 008605 303 VEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK--CGVPFRSMVV 380 (560)
Q Consensus 303 l~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~--~~~~i~v~~l 380 (560)
...+-.+...|--.|||+ |+.|++..++.. -.+.++.|++.-|..++-+++++..-.. ++... +...
T Consensus 200 FKQkaTVFLVPRRHGKTW-f~VpiIsllL~s---------~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~-vi~~ 268 (668)
T PHA03372 200 FKQKATVFLVPRRHGKTW-FIIPIISFLLKN---------IIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKH-TIEN 268 (668)
T ss_pred hhccceEEEecccCCcee-hHHHHHHHHHHh---------hcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccc-eeee
Confidence 344667788899999996 578888888753 3577899999999888777666643221 11111 1111
Q ss_pred eCCcchHHHHHHhcCCCcEEEECHHHH-----HHHHHhccccCCCccEEEEccccccCCCCChHHHHHHHHhhC-CCCCc
Q 008605 381 TGGFRQKTQLENLQEGVDVLIATPGRF-----MFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS-PVTAQ 454 (560)
Q Consensus 381 ~gg~~~~~~~~~l~~~~~IlV~TP~~L-----~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~-~~~~Q 454 (560)
++--|.+.-|+.= ..-.+.+.+.-.+..+++|||||.+-. ..+..|+-.+ .+++.
T Consensus 269 --------------k~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~~-----~a~~tilgfm~q~~~K 329 (668)
T PHA03372 269 --------------KDNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIKK-----DAFNTILGFLAQNTTK 329 (668)
T ss_pred --------------cCcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccCH-----HHHHHhhhhhcccCce
Confidence 1113444433321 111223445566789999999998862 3445555544 35788
Q ss_pred EEEEeccC
Q 008605 455 YLFVTATL 462 (560)
Q Consensus 455 ~IllSATl 462 (560)
+|+.|.|-
T Consensus 330 iIfISS~N 337 (668)
T PHA03372 330 IIFISSTN 337 (668)
T ss_pred EEEEeCCC
Confidence 99999885
No 368
>PRK06904 replicative DNA helicase; Validated
Probab=87.12 E-value=5.7 Score=44.02 Aligned_cols=141 Identities=12% Similarity=0.145 Sum_probs=66.7
Q ss_pred CCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEE-eC-
Q 008605 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV-TG- 382 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l-~g- 382 (560)
|.=+++.|.+|.|||... +-+...+... .+..++|++. ..-..|+..++-.... ++....+ .|
T Consensus 221 G~LiiIaarPg~GKTafa-lnia~~~a~~----------~g~~Vl~fSl-EMs~~ql~~Rlla~~s---~v~~~~i~~g~ 285 (472)
T PRK06904 221 SDLIIVAARPSMGKTTFA-MNLCENAAMA----------SEKPVLVFSL-EMPAEQIMMRMLASLS---RVDQTKIRTGQ 285 (472)
T ss_pred CcEEEEEeCCCCChHHHH-HHHHHHHHHh----------cCCeEEEEec-cCCHHHHHHHHHHhhC---CCCHHHhccCC
Confidence 344677889999999754 4444333221 1223555542 2333444444332211 1111111 22
Q ss_pred CcchHHH------HHHhcCCCcEEE-----ECHHHHHHHHHhccccCCCccEEEEccccccCCC---CChHHHHHHHHhh
Q 008605 383 GFRQKTQ------LENLQEGVDVLI-----ATPGRFMFLIKEGILQLINLRCAILDEVDILFND---EDFEVALQSLISS 448 (560)
Q Consensus 383 g~~~~~~------~~~l~~~~~IlV-----~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d---~~f~~~l~~Il~~ 448 (560)
.....+. ...+....++.| .|+..+...+++-...-..+++||||-.+.|... ......+..|.+.
T Consensus 286 ~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~ 365 (472)
T PRK06904 286 NLDQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRAPGFEDNRTLEIAEISRS 365 (472)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCCCCCCCcHHHHHHHHHHH
Confidence 1121111 122223344666 3566665444432112235889999999988521 1233344444333
Q ss_pred C-----CCCCcEEEEec
Q 008605 449 S-----PVTAQYLFVTA 460 (560)
Q Consensus 449 ~-----~~~~Q~IllSA 460 (560)
+ ..++.+|++|.
T Consensus 366 LK~lAkel~ipVi~lsQ 382 (472)
T PRK06904 366 LKALAKELKVPVVALSQ 382 (472)
T ss_pred HHHHHHHhCCeEEEEEe
Confidence 3 23677777773
No 369
>PHA00012 I assembly protein
Probab=87.09 E-value=4.7 Score=42.31 Aligned_cols=24 Identities=25% Similarity=0.445 Sum_probs=18.6
Q ss_pred EEEEcCCCCcchhhcHHHHHHHHH
Q 008605 308 CILADQSGSGKTLAYLLPVIQRLR 331 (560)
Q Consensus 308 vlv~apTGSGKTla~llpil~~l~ 331 (560)
-++.+..|+|||+..+.-++..+.
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~ 27 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLV 27 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHH
Confidence 478999999999987766665554
No 370
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=87.09 E-value=10 Score=39.81 Aligned_cols=55 Identities=15% Similarity=0.141 Sum_probs=36.2
Q ss_pred CCccEEEEccccccCCCCChHHHHHHHHhhC------CCCCcEEEEeccCCHHHHHHHHHh
Q 008605 419 INLRCAILDEVDILFNDEDFEVALQSLISSS------PVTAQYLFVTATLPVEIYNKLVEV 473 (560)
Q Consensus 419 ~~l~~LViDEah~ll~d~~f~~~l~~Il~~~------~~~~Q~IllSATlp~~v~~~l~~~ 473 (560)
.+.++||||=+-++..+......+..+.+.+ .+..-++.++||........+..+
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f 255 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAF 255 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHH
Confidence 4678999999988764555666777766532 233457889999876554444443
No 371
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=86.83 E-value=1.4 Score=47.15 Aligned_cols=45 Identities=20% Similarity=0.315 Sum_probs=29.9
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHH
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLR 331 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~ 331 (560)
.+|.++|+++.+++.+. ..+..++|++|||||||.. +-.++..+.
T Consensus 130 ~~l~~lgl~~~~~~~l~------------------~~~GlilI~G~TGSGKTT~-l~al~~~i~ 174 (372)
T TIGR02525 130 PDLKQMGIEPDLFNSLL------------------PAAGLGLICGETGSGKSTL-AASIYQHCG 174 (372)
T ss_pred CCHHHcCCCHHHHHHHH------------------hcCCEEEEECCCCCCHHHH-HHHHHHHHH
Confidence 36778888876554332 1334689999999999975 344555554
No 372
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=86.63 E-value=1.7 Score=42.02 Aligned_cols=56 Identities=23% Similarity=0.265 Sum_probs=29.9
Q ss_pred CHHHHHHHHHhccccCCCccEEEEccccccC-C---CCChHHHHHHHHhhCC-CCCcEEEEeccC
Q 008605 403 TPGRFMFLIKEGILQLINLRCAILDEVDILF-N---DEDFEVALQSLISSSP-VTAQYLFVTATL 462 (560)
Q Consensus 403 TP~~L~~ll~~~~~~l~~l~~LViDEah~ll-~---d~~f~~~l~~Il~~~~-~~~Q~IllSATl 462 (560)
+...+...+...... -+|||||+|.+. . ...+...+..++.... .....++++++-
T Consensus 105 ~l~~~~~~l~~~~~~----~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 105 ALERLLEKLKKKGKK----VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp -HHHHHHHHHHCHCC----EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred HHHHHHHHHHhcCCc----EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 344455555543221 479999999998 2 2345556666665522 233344555554
No 373
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=86.45 E-value=1 Score=49.60 Aligned_cols=39 Identities=23% Similarity=0.370 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHcCCc--EEEEcCCCCcchhhcHHHHHHHHH
Q 008605 292 SQIQAMAFPPVVEGKS--CILADQSGSGKTLAYLLPVIQRLR 331 (560)
Q Consensus 292 t~iQ~~aip~il~g~d--vlv~apTGSGKTla~llpil~~l~ 331 (560)
++.|...+..+++... +||.+|||||||.. +..++..+.
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln 283 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELN 283 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhc
Confidence 4566667766666544 77899999999976 445555554
No 374
>PRK10689 transcription-repair coupling factor; Provisional
Probab=86.33 E-value=2.9 Score=51.19 Aligned_cols=79 Identities=16% Similarity=0.220 Sum_probs=61.0
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHh---c-CCCcEEEECHHHHHHHHHhccccCCC
Q 008605 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLIN 420 (560)
Q Consensus 345 ~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l---~-~~~~IlV~TP~~L~~ll~~~~~~l~~ 420 (560)
+.+++|++++++-+..+++.++++. .++++.+++|+....+..+.+ . ...+|||||- ++. ..+++.+
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~---p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTd-----Iie-rGIDIP~ 879 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELV---PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----IIE-TGIDIPT 879 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhC---CCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECc-----hhh-ccccccc
Confidence 5689999999999999888888764 357888999998776543333 2 4589999993 333 4678999
Q ss_pred ccEEEEcccccc
Q 008605 421 LRCAILDEVDIL 432 (560)
Q Consensus 421 l~~LViDEah~l 432 (560)
++++|++.+|++
T Consensus 880 v~~VIi~~ad~f 891 (1147)
T PRK10689 880 ANTIIIERADHF 891 (1147)
T ss_pred CCEEEEecCCCC
Confidence 999999999864
No 375
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=86.21 E-value=3.8 Score=41.55 Aligned_cols=37 Identities=14% Similarity=0.109 Sum_probs=24.7
Q ss_pred cCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEc
Q 008605 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILA 352 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~ 352 (560)
.|.-++|.+++|+|||...+-.+.+.+. .+-+++|++
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~------------~Ge~vlyis 71 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQAS------------RGNPVLFVT 71 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh------------CCCcEEEEE
Confidence 4566899999999999764443333322 244688877
No 376
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.10 E-value=7 Score=43.47 Aligned_cols=42 Identities=31% Similarity=0.378 Sum_probs=26.9
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCC--c-EEEEcCCCCcchhhcHH
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGK--S-CILADQSGSGKTLAYLL 324 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~--d-vlv~apTGSGKTla~ll 324 (560)
.+|.++--.+.+.+.|.. .+..++ + .|+++|.|+|||.+..+
T Consensus 13 ~~f~diiGq~~i~~~L~~---------------~i~~~~i~hayLf~Gp~G~GKTtlAr~ 57 (486)
T PRK14953 13 KFFKEVIGQEIVVRILKN---------------AVKLQRVSHAYIFAGPRGTGKTTIARI 57 (486)
T ss_pred CcHHHccChHHHHHHHHH---------------HHHcCCCCeEEEEECCCCCCHHHHHHH
Confidence 467777666666655543 223332 3 57899999999876543
No 377
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=85.92 E-value=3.2 Score=48.39 Aligned_cols=39 Identities=15% Similarity=0.140 Sum_probs=23.7
Q ss_pred CccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCH
Q 008605 420 NLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPV 464 (560)
Q Consensus 420 ~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~ 464 (560)
...+|||||+|.+. . ... ..++..+. ..++++++||-+.
T Consensus 109 ~~~IL~IDEIh~Ln-~-~qQ---daLL~~lE-~g~IiLI~aTTen 147 (725)
T PRK13341 109 KRTILFIDEVHRFN-K-AQQ---DALLPWVE-NGTITLIGATTEN 147 (725)
T ss_pred CceEEEEeChhhCC-H-HHH---HHHHHHhc-CceEEEEEecCCC
Confidence 35689999999986 2 222 23333333 4567888887543
No 378
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=85.87 E-value=4.4 Score=44.16 Aligned_cols=139 Identities=15% Similarity=0.124 Sum_probs=64.4
Q ss_pred CCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEE-eCC
Q 008605 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV-TGG 383 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l-~gg 383 (560)
|.=++|.|++|+|||...+ -++..+... .+..++|++. ..-..|+..++..... ++....+ .|.
T Consensus 195 G~l~vi~g~pg~GKT~~~l-~~a~~~a~~----------~g~~vl~~Sl-Em~~~~i~~R~~~~~~---~v~~~~~~~g~ 259 (434)
T TIGR00665 195 SDLIILAARPSMGKTAFAL-NIAENAAIK----------EGKPVAFFSL-EMSAEQLAMRMLSSES---RVDSQKLRTGK 259 (434)
T ss_pred CeEEEEEeCCCCChHHHHH-HHHHHHHHh----------CCCeEEEEeC-cCCHHHHHHHHHHHhc---CCCHHHhccCC
Confidence 4557889999999996543 333333221 1234666642 2233444444433221 1111111 122
Q ss_pred cchHHH------HHHhcCCCcEEE-----ECHHHHHHHHHhccccCCCccEEEEccccccCCCC---ChHHHHHHHHhhC
Q 008605 384 FRQKTQ------LENLQEGVDVLI-----ATPGRFMFLIKEGILQLINLRCAILDEVDILFNDE---DFEVALQSLISSS 449 (560)
Q Consensus 384 ~~~~~~------~~~l~~~~~IlV-----~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~---~f~~~l~~Il~~~ 449 (560)
....+. ...+.+ ..+.| .|+..+...++.-... ..+++||||=.+.|.... .....+..|.+.+
T Consensus 260 l~~~~~~~~~~a~~~l~~-~~l~i~d~~~~~~~~i~~~i~~~~~~-~~~~~vvID~l~~i~~~~~~~~r~~~i~~i~~~L 337 (434)
T TIGR00665 260 LSDEDWEKLTSAAGKLSE-APLYIDDTPGLTITELRAKARRLKRE-HGLGLIVIDYLQLMSGSGRSENRQQEVSEISRSL 337 (434)
T ss_pred CCHHHHHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHhcCCCCCCCCHHHHHHHHHHHH
Confidence 222111 122222 34554 2455565544432111 348899999999885211 2233344443332
Q ss_pred -----CCCCcEEEEec
Q 008605 450 -----PVTAQYLFVTA 460 (560)
Q Consensus 450 -----~~~~Q~IllSA 460 (560)
..++.++++|-
T Consensus 338 k~lA~e~~i~vi~lsq 353 (434)
T TIGR00665 338 KALAKELNVPVIALSQ 353 (434)
T ss_pred HHHHHHhCCeEEEEec
Confidence 23566776664
No 379
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=85.81 E-value=1.6 Score=41.71 Aligned_cols=43 Identities=21% Similarity=0.314 Sum_probs=27.8
Q ss_pred CCCccEEEEccccccCCCCChHHHHHHHHhhC-CCCCcEEEEecc
Q 008605 418 LINLRCAILDEVDILFNDEDFEVALQSLISSS-PVTAQYLFVTAT 461 (560)
Q Consensus 418 l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~-~~~~Q~IllSAT 461 (560)
+...+++++||...-+ |......+..++... ..+.++|+.|--
T Consensus 114 ~~~p~llilDEp~~~L-D~~~~~~i~~~L~~~~~~g~tiIiiSH~ 157 (178)
T cd03239 114 IKPSPFYVLDEIDAAL-DPTNRRRVSDMIKEMAKHTSQFIVITLK 157 (178)
T ss_pred CCCCCEEEEECCCCCC-CHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 3567899999999988 555555555555443 334666666553
No 380
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=85.73 E-value=1.3 Score=44.73 Aligned_cols=138 Identities=14% Similarity=0.164 Sum_probs=68.4
Q ss_pred CcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCC---HHHHHHHHHHHHhhhcCCCCceEEEEeC
Q 008605 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPT---AELASQVLSNCRSLSKCGVPFRSMVVTG 382 (560)
Q Consensus 306 ~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~Pt---reLa~Qi~~~l~~l~~~~~~i~v~~l~g 382 (560)
.=+++.|.+|.|||...+--+.+.+.. .+..++|++.- .+++..+........ . ..+..
T Consensus 20 ~L~vi~a~pg~GKT~~~l~ia~~~a~~-----------~~~~vly~SlEm~~~~l~~R~la~~s~v~-----~--~~i~~ 81 (259)
T PF03796_consen 20 ELTVIAARPGVGKTAFALQIALNAALN-----------GGYPVLYFSLEMSEEELAARLLARLSGVP-----Y--NKIRS 81 (259)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT-----------TSSEEEEEESSS-HHHHHHHHHHHHHTST-----H--HHHHC
T ss_pred cEEEEEecccCCchHHHHHHHHHHHHh-----------cCCeEEEEcCCCCHHHHHHHHHHHhhcch-----h--hhhhc
Confidence 347788999999997654444443332 13468888742 444444433332221 1 00111
Q ss_pred CcchHHHHH-------HhcCCCcEEEE----CHHHHHHHHHhccccCCCccEEEEccccccCCC---CChHHHHHHHHhh
Q 008605 383 GFRQKTQLE-------NLQEGVDVLIA----TPGRFMFLIKEGILQLINLRCAILDEVDILFND---EDFEVALQSLISS 448 (560)
Q Consensus 383 g~~~~~~~~-------~l~~~~~IlV~----TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d---~~f~~~l~~Il~~ 448 (560)
+.-....+. .+....-++.. |++.+...++.-......+++||||-+|.|-.. ......+..+.+.
T Consensus 82 g~l~~~e~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~ 161 (259)
T PF03796_consen 82 GDLSDEEFERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRE 161 (259)
T ss_dssp CGCHHHHHHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHH
Confidence 111112222 22222223333 455666665543333378899999999998741 1233444444332
Q ss_pred CC-----CCCcEEEEecc
Q 008605 449 SP-----VTAQYLFVTAT 461 (560)
Q Consensus 449 ~~-----~~~Q~IllSAT 461 (560)
+. .++.++++|..
T Consensus 162 Lk~lA~~~~i~vi~~sQl 179 (259)
T PF03796_consen 162 LKALAKELNIPVIALSQL 179 (259)
T ss_dssp HHHHHHHHTSEEEEEEEB
T ss_pred HHHHHHHcCCeEEEcccc
Confidence 21 25666666653
No 381
>PRK07004 replicative DNA helicase; Provisional
Probab=85.63 E-value=3.7 Score=45.28 Aligned_cols=64 Identities=13% Similarity=0.145 Sum_probs=35.0
Q ss_pred CcEEEE-----CHHHHHHHHHhccccCCCccEEEEccccccCCC---CChHHHHHHHHhhCC-----CCCcEEEEec
Q 008605 397 VDVLIA-----TPGRFMFLIKEGILQLINLRCAILDEVDILFND---EDFEVALQSLISSSP-----VTAQYLFVTA 460 (560)
Q Consensus 397 ~~IlV~-----TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d---~~f~~~l~~Il~~~~-----~~~Q~IllSA 460 (560)
..+.|. |+..+...+++-......+++||||=.+.|... ......+..|.+.+. .++.++++|.
T Consensus 296 ~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~~~~~~~~r~~ei~~Isr~LK~lAkel~ipVi~lsQ 372 (460)
T PRK07004 296 AQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMSGSSQGENRATEISEISRSLKSLAKELDVPVIALSQ 372 (460)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhccCCCCCCcHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 456653 455555444332112235889999999988621 123334445544332 3667777764
No 382
>PRK05748 replicative DNA helicase; Provisional
Probab=85.26 E-value=5.8 Score=43.54 Aligned_cols=141 Identities=13% Similarity=0.127 Sum_probs=65.5
Q ss_pred CCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEE-eCC
Q 008605 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV-TGG 383 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l-~gg 383 (560)
|.-++|.|++|.|||...+ -++..+... .+..++|++ ...-..|+..++..... .+....+ .|.
T Consensus 203 G~livIaarpg~GKT~~al-~ia~~~a~~----------~g~~v~~fS-lEms~~~l~~R~l~~~~---~v~~~~i~~~~ 267 (448)
T PRK05748 203 NDLIIVAARPSVGKTAFAL-NIAQNVATK----------TDKNVAIFS-LEMGAESLVMRMLCAEG---NIDAQRLRTGQ 267 (448)
T ss_pred CceEEEEeCCCCCchHHHH-HHHHHHHHh----------CCCeEEEEe-CCCCHHHHHHHHHHHhc---CCCHHHhhcCC
Confidence 4457889999999996543 443333211 122355553 33334455444432111 1111111 122
Q ss_pred cchHHHHHHh------cCCCcEEEE-----CHHHHHHHHHhccccCCCccEEEEccccccCCC----CChHHHHHHHHhh
Q 008605 384 FRQKTQLENL------QEGVDVLIA-----TPGRFMFLIKEGILQLINLRCAILDEVDILFND----EDFEVALQSLISS 448 (560)
Q Consensus 384 ~~~~~~~~~l------~~~~~IlV~-----TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d----~~f~~~l~~Il~~ 448 (560)
... .++..+ ..+.++.|. |++.+...+++-......+++||||=.+.|-.. ......+..|.+.
T Consensus 268 l~~-~e~~~~~~a~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~~~~~~~~~r~~~i~~i~~~ 346 (448)
T PRK05748 268 LTD-DDWPKLTIAMGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQGSGRSGENRQQEVSEISRS 346 (448)
T ss_pred CCH-HHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcCCCCCCCcCHHHHHHHHHHH
Confidence 222 222211 122445553 455555444332111126889999999988521 1223334444333
Q ss_pred C-----CCCCcEEEEecc
Q 008605 449 S-----PVTAQYLFVTAT 461 (560)
Q Consensus 449 ~-----~~~~Q~IllSAT 461 (560)
+ ..++.+|++|..
T Consensus 347 LK~lAke~~i~vi~lsQl 364 (448)
T PRK05748 347 LKALAKELKVPVIALSQL 364 (448)
T ss_pred HHHHHHHhCCeEEEeccc
Confidence 3 135667766653
No 383
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=85.22 E-value=4.1 Score=45.23 Aligned_cols=53 Identities=23% Similarity=0.261 Sum_probs=37.0
Q ss_pred cCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhh
Q 008605 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~ 369 (560)
.|.-+++.+|+|+|||...+-.+...+. ++-+++|++ .-|-..|+...++.++
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~------------~ge~~~y~s-~eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACA------------NKERAILFA-YEESRAQLLRNAYSWG 314 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH------------CCCeEEEEE-eeCCHHHHHHHHHHcC
Confidence 3457899999999999854433333222 244688876 6777888888888774
No 384
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=85.21 E-value=2.8 Score=36.43 Aligned_cols=37 Identities=24% Similarity=0.369 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHhC--CCCcEEEEeCchHHHHHHHHHHHh
Q 008605 515 NKKSALLQLIEKS--PVSKTIVFCNKVCFSYKCNNLFGF 551 (560)
Q Consensus 515 ~K~~~L~~lL~~~--~~~ktIIFcnS~~~a~~la~~Lk~ 551 (560)
.|...+.+++... ..+++||||++...++.+++.|+.
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~ 50 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRK 50 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHh
Confidence 5777788888765 368999999999999999999976
No 385
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=85.21 E-value=13 Score=35.54 Aligned_cols=50 Identities=12% Similarity=0.208 Sum_probs=34.9
Q ss_pred CCCccEEEEccccccCCCCCh--HHHHHHHHhhCCCCCcEEEEeccCCHHHHH
Q 008605 418 LINLRCAILDEVDILFNDEDF--EVALQSLISSSPVTAQYLFVTATLPVEIYN 468 (560)
Q Consensus 418 l~~l~~LViDEah~ll~d~~f--~~~l~~Il~~~~~~~Q~IllSATlp~~v~~ 468 (560)
-..+++||+||+-..+ +.++ ...+..+++..|...-+|+..-..|+.+.+
T Consensus 95 ~~~~DlvVLDEi~~A~-~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e 146 (173)
T TIGR00708 95 DPELDLVLLDELTYAL-KYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLE 146 (173)
T ss_pred cCCCCEEEehhhHHHH-HCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHH
Confidence 3578999999998766 4442 345556677777777777766677877655
No 386
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=85.16 E-value=4.3 Score=46.52 Aligned_cols=48 Identities=19% Similarity=0.275 Sum_probs=30.3
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcH
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYL 323 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~l 323 (560)
.+|+++-.++..++.|..+ ++...++ ...++-+++.+|+|+|||..+.
T Consensus 81 ~~ldel~~~~~ki~~l~~~-------l~~~~~~-~~~~~illL~GP~GsGKTTl~~ 128 (637)
T TIGR00602 81 ETQHELAVHKKKIEEVETW-------LKAQVLE-NAPKRILLITGPSGCGKSTTIK 128 (637)
T ss_pred CCHHHhcCcHHHHHHHHHH-------HHhcccc-cCCCcEEEEECCCCCCHHHHHH
Confidence 5789999998887766542 0000000 1123348899999999998643
No 387
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=85.13 E-value=3.7 Score=40.32 Aligned_cols=52 Identities=21% Similarity=0.326 Sum_probs=32.7
Q ss_pred CCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhh
Q 008605 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~ 369 (560)
|.-+++.+++|+|||...+--+...+. .+-.++|+.- .+-..++.+.+..+.
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~------------~g~~~~y~s~-e~~~~~l~~~~~~~~ 67 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLK------------NGEKAMYISL-EEREERILGYAKSKG 67 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh------------CCCeEEEEEC-CCCHHHHHHHHHHcC
Confidence 456889999999998754333333332 1345777654 445677777776653
No 388
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=85.07 E-value=3.7 Score=49.23 Aligned_cols=80 Identities=18% Similarity=0.236 Sum_probs=62.0
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHh---c-CCCcEEEECHHHHHHHHHhccccCC
Q 008605 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLI 419 (560)
Q Consensus 344 ~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l---~-~~~~IlV~TP~~L~~ll~~~~~~l~ 419 (560)
.+.+++|++|+++-+..+++.++++. .++++..++|+....+....+ . ...+|||||- ++. ..+++.
T Consensus 659 ~g~qv~if~n~i~~~e~l~~~L~~~~---p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~-----iie-~GIDIp 729 (926)
T TIGR00580 659 RGGQVFYVHNRIESIEKLATQLRELV---PEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTT-----IIE-TGIDIP 729 (926)
T ss_pred cCCeEEEEECCcHHHHHHHHHHHHhC---CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhh-cccccc
Confidence 35689999999999999988888764 467899999998765544333 2 4589999994 333 467889
Q ss_pred CccEEEEcccccc
Q 008605 420 NLRCAILDEVDIL 432 (560)
Q Consensus 420 ~l~~LViDEah~l 432 (560)
++.++|++.+++.
T Consensus 730 ~v~~VIi~~a~~~ 742 (926)
T TIGR00580 730 NANTIIIERADKF 742 (926)
T ss_pred cCCEEEEecCCCC
Confidence 9999999999864
No 389
>PRK04328 hypothetical protein; Provisional
Probab=85.07 E-value=5.7 Score=39.96 Aligned_cols=53 Identities=25% Similarity=0.261 Sum_probs=34.5
Q ss_pred cCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhh
Q 008605 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~ 369 (560)
.|..+++.+++|+|||...+-.+.+.+.. +-.++|+. +.+-..++.+.++.++
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~------------ge~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM------------GEPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc------------CCcEEEEE-eeCCHHHHHHHHHHcC
Confidence 35678999999999997654444444322 33577776 5555666776666653
No 390
>PRK08506 replicative DNA helicase; Provisional
Probab=84.99 E-value=4.3 Score=44.96 Aligned_cols=140 Identities=14% Similarity=0.199 Sum_probs=65.2
Q ss_pred CCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCc
Q 008605 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~ 384 (560)
|.=+++.|.||.|||...+--+. .+... +..++|++. -.-..|+..++-.... +.++.- ...|..
T Consensus 192 G~LivIaarpg~GKT~fal~ia~-~~~~~-----------g~~V~~fSl-EMs~~ql~~Rlla~~s-~v~~~~-i~~~~l 256 (472)
T PRK08506 192 GDLIIIAARPSMGKTTLCLNMAL-KALNQ-----------DKGVAFFSL-EMPAEQLMLRMLSAKT-SIPLQN-LRTGDL 256 (472)
T ss_pred CceEEEEcCCCCChHHHHHHHHH-HHHhc-----------CCcEEEEeC-cCCHHHHHHHHHHHhc-CCCHHH-HhcCCC
Confidence 44577899999999965443333 33221 234555542 2334444444432211 111111 011222
Q ss_pred chHHH------HHHhcCCCcEEEE-----CHHHHHHHHHhccccCCCccEEEEccccccCCCC---ChHHHHHHHHhhC-
Q 008605 385 RQKTQ------LENLQEGVDVLIA-----TPGRFMFLIKEGILQLINLRCAILDEVDILFNDE---DFEVALQSLISSS- 449 (560)
Q Consensus 385 ~~~~~------~~~l~~~~~IlV~-----TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~---~f~~~l~~Il~~~- 449 (560)
...+. ...+.. ..+.|- |+..+...+++-......+++||||=.+.|.... .....+..|.+.+
T Consensus 257 ~~~e~~~~~~a~~~l~~-~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~~~~~~~r~~ev~~isr~LK 335 (472)
T PRK08506 257 DDDEWERLSDACDELSK-KKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSGSGNFKDRHLQISEISRGLK 335 (472)
T ss_pred CHHHHHHHHHHHHHHHc-CCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhccCCCCCCCHHHHHHHHHHHHH
Confidence 21111 122222 345542 4555655544322122358999999999886221 2223333333222
Q ss_pred ----CCCCcEEEEec
Q 008605 450 ----PVTAQYLFVTA 460 (560)
Q Consensus 450 ----~~~~Q~IllSA 460 (560)
..++.++++|.
T Consensus 336 ~lAkel~ipVi~lsQ 350 (472)
T PRK08506 336 LLARELDIPIIALSQ 350 (472)
T ss_pred HHHHHhCCcEEEEee
Confidence 13667777764
No 391
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=84.93 E-value=0.77 Score=52.24 Aligned_cols=49 Identities=18% Similarity=0.215 Sum_probs=39.5
Q ss_pred CcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhh
Q 008605 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (560)
Q Consensus 306 ~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l 368 (560)
.+++++||||||||..|++|-+.... .-+||+=|--|+...+....+++
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~~--------------~S~VV~DpKGEl~~~Ta~~R~~~ 207 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFWE--------------DSVVVHDIKLENYELTSGWREKQ 207 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhCC--------------CCEEEEeCcHHHHHHHHHHHHHC
Confidence 57999999999999999999886531 23788888889988887777665
No 392
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=84.87 E-value=1.9 Score=44.40 Aligned_cols=16 Identities=31% Similarity=0.376 Sum_probs=14.0
Q ss_pred CcEEEEcCCCCcchhh
Q 008605 306 KSCILADQSGSGKTLA 321 (560)
Q Consensus 306 ~dvlv~apTGSGKTla 321 (560)
.++++.+|+|+|||..
T Consensus 31 ~~~ll~Gp~G~GKT~l 46 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTL 46 (305)
T ss_pred CeEEEECCCCCCHHHH
Confidence 4699999999999964
No 393
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=84.80 E-value=18 Score=40.57 Aligned_cols=98 Identities=22% Similarity=0.234 Sum_probs=73.7
Q ss_pred CCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHH---H
Q 008605 314 SGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ---L 390 (560)
Q Consensus 314 TGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~---~ 390 (560)
.++||+..-++++.+.+... -.|-+||.+-+.+-|.|++..+..+ .++++.+++|....... .
T Consensus 366 vF~gse~~K~lA~rq~v~~g----------~~PP~lIfVQs~eRak~L~~~L~~~----~~i~v~vIh~e~~~~qrde~~ 431 (593)
T KOG0344|consen 366 VFCGSEKGKLLALRQLVASG----------FKPPVLIFVQSKERAKQLFEELEIY----DNINVDVIHGERSQKQRDETM 431 (593)
T ss_pred eeeecchhHHHHHHHHHhcc----------CCCCeEEEEecHHHHHHHHHHhhhc----cCcceeeEecccchhHHHHHH
Confidence 47888888777777766542 4677999999999999999988732 57899999998665433 4
Q ss_pred HHhcC-CCcEEEECHHHHHHHHHhccccCCCccEEEEccccc
Q 008605 391 ENLQE-GVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDI 431 (560)
Q Consensus 391 ~~l~~-~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ 431 (560)
.+++. ...|+||| +++.++ ++|.++.+||-+++-.
T Consensus 432 ~~FR~g~IwvLicT-----dll~RG-iDf~gvn~VInyD~p~ 467 (593)
T KOG0344|consen 432 ERFRIGKIWVLICT-----DLLARG-IDFKGVNLVINYDFPQ 467 (593)
T ss_pred HHHhccCeeEEEeh-----hhhhcc-ccccCcceEEecCCCc
Confidence 44443 37899998 455554 7899999999987753
No 394
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=84.72 E-value=4.4 Score=43.53 Aligned_cols=18 Identities=39% Similarity=0.373 Sum_probs=15.0
Q ss_pred CcEEEEcCCCCcchhhcH
Q 008605 306 KSCILADQSGSGKTLAYL 323 (560)
Q Consensus 306 ~dvlv~apTGSGKTla~l 323 (560)
.++|+.+|.|+|||..+.
T Consensus 49 ~SmIl~GPPG~GKTTlA~ 66 (436)
T COG2256 49 HSMILWGPPGTGKTTLAR 66 (436)
T ss_pred ceeEEECCCCCCHHHHHH
Confidence 379999999999997543
No 395
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=84.36 E-value=10 Score=36.85 Aligned_cols=50 Identities=12% Similarity=0.185 Sum_probs=33.9
Q ss_pred CCCccEEEEccccccCCCCCh--HHHHHHHHhhCCCCCcEEEEeccCCHHHHH
Q 008605 418 LINLRCAILDEVDILFNDEDF--EVALQSLISSSPVTAQYLFVTATLPVEIYN 468 (560)
Q Consensus 418 l~~l~~LViDEah~ll~d~~f--~~~l~~Il~~~~~~~Q~IllSATlp~~v~~ 468 (560)
-..+++||+||+-..+ +.++ ...+..+++..|...-+|+.--..|+++.+
T Consensus 113 ~~~ydlvVLDEi~~Al-~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie 164 (191)
T PRK05986 113 DESYDLVVLDELTYAL-KYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIE 164 (191)
T ss_pred CCCCCEEEEehhhHHH-HCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHH
Confidence 3568999999998877 5553 345556666666666566655567777654
No 396
>PRK13764 ATPase; Provisional
Probab=84.36 E-value=1.8 Score=49.22 Aligned_cols=45 Identities=18% Similarity=0.273 Sum_probs=30.1
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHH
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLR 331 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~ 331 (560)
.+++++++++.+++.+. ..+++++++++||||||.. +-.++..+.
T Consensus 238 ~~Le~l~l~~~l~~~l~------------------~~~~~ILIsG~TGSGKTTl-l~AL~~~i~ 282 (602)
T PRK13764 238 LSLEDYNLSEKLKERLE------------------ERAEGILIAGAPGAGKSTF-AQALAEFYA 282 (602)
T ss_pred CCHHHhCCCHHHHHHHH------------------hcCCEEEEECCCCCCHHHH-HHHHHHHHh
Confidence 46777777765543322 3467899999999999964 344555543
No 397
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=84.31 E-value=6.5 Score=41.20 Aligned_cols=40 Identities=20% Similarity=0.480 Sum_probs=25.7
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC---CcEEEEcCCCCcchhhc
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG---KSCILADQSGSGKTLAY 322 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g---~dvlv~apTGSGKTla~ 322 (560)
.+|.++--.+.+++.|.. .+.+| +.+++.+|.|+|||...
T Consensus 11 ~~~~~iig~~~~~~~l~~---------------~~~~~~~~~~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKN---------------AIKNGRIAHAYLFSGPRGTGKTSIA 53 (355)
T ss_pred CcHhhccCcHHHHHHHHH---------------HHHcCCCCeEEEEECCCCCCHHHHH
Confidence 567776555666555533 12223 34789999999999654
No 398
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=84.30 E-value=23 Score=37.22 Aligned_cols=126 Identities=13% Similarity=0.138 Sum_probs=75.2
Q ss_pred EEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEc--CCHHHHHHHHHHHHhhhcCCCCceEEEE-eCCc
Q 008605 308 CILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILA--PTAELASQVLSNCRSLSKCGVPFRSMVV-TGGF 384 (560)
Q Consensus 308 vlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~--PtreLa~Qi~~~l~~l~~~~~~i~v~~l-~gg~ 384 (560)
+++++-.|+|||... .=+.+.+.. .+.++++.+ -.|+=|.++...+-+-. ++.+... .|+.
T Consensus 142 il~vGVNG~GKTTTI--aKLA~~l~~----------~g~~VllaA~DTFRAaAiEQL~~w~er~----gv~vI~~~~G~D 205 (340)
T COG0552 142 ILFVGVNGVGKTTTI--AKLAKYLKQ----------QGKSVLLAAGDTFRAAAIEQLEVWGERL----GVPVISGKEGAD 205 (340)
T ss_pred EEEEecCCCchHhHH--HHHHHHHHH----------CCCeEEEEecchHHHHHHHHHHHHHHHh----CCeEEccCCCCC
Confidence 678999999999873 333333332 244555554 34777766666554432 2333221 2332
Q ss_pred chHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCCChHHHHHHHHhhCCCCC------cEEEE
Q 008605 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTA------QYLFV 458 (560)
Q Consensus 385 ~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~------Q~Ill 458 (560)
+-.- ..+.++.. ...++++|++|=|-+|-+..++...++.|.+.+.+.. -++.+
T Consensus 206 pAaV------------------afDAi~~A--kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvl 265 (340)
T COG0552 206 PAAV------------------AFDAIQAA--KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVL 265 (340)
T ss_pred cHHH------------------HHHHHHHH--HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEE
Confidence 2111 12333332 2356789999999999877789999999988776543 34555
Q ss_pred eccCCHHHHHH
Q 008605 459 TATLPVEIYNK 469 (560)
Q Consensus 459 SATlp~~v~~~ 469 (560)
=||.-.+-.+.
T Consensus 266 DAttGqnal~Q 276 (340)
T COG0552 266 DATTGQNALSQ 276 (340)
T ss_pred EcccChhHHHH
Confidence 89986554443
No 399
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=84.27 E-value=6.7 Score=43.77 Aligned_cols=145 Identities=15% Similarity=0.166 Sum_probs=82.8
Q ss_pred CChHHHHHHHHHHHc------C----CcEEEEcCCCCcchhhcH-HHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHH
Q 008605 290 RPSQIQAMAFPPVVE------G----KSCILADQSGSGKTLAYL-LPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELA 358 (560)
Q Consensus 290 ~pt~iQ~~aip~il~------g----~dvlv~apTGSGKTla~l-lpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa 358 (560)
.+-|+|.-++-.++- | +-.+|..|-+-|||.... +.....+... ..+-...|++|+.+-+
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~---------~~~~~~~i~A~s~~qa 131 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW---------RSGAGIYILAPSVEQA 131 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh---------hcCCcEEEEeccHHHH
Confidence 568999999988771 2 247888999999996544 2222233222 3455789999999999
Q ss_pred HHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHH---HHHHHHh--ccccCCCccEEEEccccccC
Q 008605 359 SQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGR---FMFLIKE--GILQLINLRCAILDEVDILF 433 (560)
Q Consensus 359 ~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~---L~~ll~~--~~~~l~~l~~LViDEah~ll 433 (560)
.+.++.++.......+++.. .....+-...+-.. .+..+.. +..+-.+..+.|+||.|...
T Consensus 132 ~~~F~~ar~mv~~~~~l~~~--------------~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~ 197 (546)
T COG4626 132 ANSFNPARDMVKRDDDLRDL--------------CNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFG 197 (546)
T ss_pred HHhhHHHHHHHHhCcchhhh--------------hccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhc
Confidence 99999888775422211110 00111111112111 1122222 23344456789999999887
Q ss_pred CCCChHHHHHHHHhhC--CCCCcEEEEec
Q 008605 434 NDEDFEVALQSLISSS--PVTAQYLFVTA 460 (560)
Q Consensus 434 ~d~~f~~~l~~Il~~~--~~~~Q~IllSA 460 (560)
+.+ ..+..+..-+ .++.+++..|.
T Consensus 198 -~~~--~~~~~~~~g~~ar~~~l~~~ITT 223 (546)
T COG4626 198 -KQE--DMYSEAKGGLGARPEGLVVYITT 223 (546)
T ss_pred -CHH--HHHHHHHhhhccCcCceEEEEec
Confidence 322 4444444333 34556666554
No 400
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=84.19 E-value=4.2 Score=47.94 Aligned_cols=19 Identities=32% Similarity=0.314 Sum_probs=15.3
Q ss_pred cCCcEEEEcCCCCcchhhc
Q 008605 304 EGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~ 322 (560)
.+..+++.+|+|+|||..+
T Consensus 346 ~~~~lll~GppG~GKT~lA 364 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLG 364 (775)
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3456899999999999653
No 401
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=84.17 E-value=4.6 Score=47.34 Aligned_cols=18 Identities=33% Similarity=0.410 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCCcchhhc
Q 008605 305 GKSCILADQSGSGKTLAY 322 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~ 322 (560)
..|+++.+|+|+|||...
T Consensus 207 ~~n~LLvGppGvGKT~la 224 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 458999999999999764
No 402
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=83.92 E-value=3.4 Score=43.17 Aligned_cols=75 Identities=24% Similarity=0.280 Sum_probs=45.4
Q ss_pred cccccccccCCCHHHHHHHHHCCCCCChHHHHHH-HHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCC
Q 008605 265 FSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMA-FPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTS 343 (560)
Q Consensus 265 ~~~~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~a-ip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~ 343 (560)
+.+..|..-.++..-+.. +..+++.|..- |-++..+++++++++||||||.. +.+++..+-.
T Consensus 107 ~~IRk~~~~~~t~~~l~~-----~gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~~Ip~----------- 169 (312)
T COG0630 107 FTIRKFSDEPITPEDLIE-----YGTISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLDFIPP----------- 169 (312)
T ss_pred EEEEcCCCCCCCHHHHhh-----cCCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHHhCCc-----------
Confidence 334455555555443332 33566666554 45566789999999999999964 5555555432
Q ss_pred CCCEEEEEcCCHHH
Q 008605 344 GSPRVVILAPTAEL 357 (560)
Q Consensus 344 ~~~~aLil~PtreL 357 (560)
.-+.+.+=-|.|+
T Consensus 170 -~~rivtIEdt~E~ 182 (312)
T COG0630 170 -EERIVTIEDTPEL 182 (312)
T ss_pred -hhcEEEEeccccc
Confidence 2246666666555
No 403
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=83.91 E-value=4.6 Score=47.20 Aligned_cols=52 Identities=19% Similarity=0.397 Sum_probs=31.5
Q ss_pred cccccccCCCHHHHHHHHHC---CCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhh
Q 008605 267 RKSFKELGCSDYMIESLKRQ---NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLA 321 (560)
Q Consensus 267 ~~sF~~l~L~~~ll~~L~~~---g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla 321 (560)
..+|++++-.+..++.+.++ -+.+|.-.+... +..++.+++.+|+|+|||..
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~g---i~~~~giLL~GppGtGKT~l 228 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLG---IEPPKGVLLYGPPGTGKTLL 228 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcC---CCCCceEEEECCCCCChHHH
Confidence 35788887666666665442 122222122111 23457899999999999965
No 404
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=83.54 E-value=13 Score=35.08 Aligned_cols=51 Identities=16% Similarity=0.213 Sum_probs=36.5
Q ss_pred cCCCccEEEEccccccCCCCC--hHHHHHHHHhhCCCCCcEEEEeccCCHHHHH
Q 008605 417 QLINLRCAILDEVDILFNDED--FEVALQSLISSSPVTAQYLFVTATLPVEIYN 468 (560)
Q Consensus 417 ~l~~l~~LViDEah~ll~d~~--f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~ 468 (560)
....+++||+||+-..+ ..+ -...+..+++..|...-+|+.+-..|+.+.+
T Consensus 92 ~~~~~dLlVLDEi~~a~-~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e 144 (159)
T cd00561 92 ASGEYDLVILDEINYAL-GYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIE 144 (159)
T ss_pred hcCCCCEEEEechHhHh-hCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHH
Confidence 34578999999998876 344 3455666777777776777777778887655
No 405
>PRK08840 replicative DNA helicase; Provisional
Probab=83.50 E-value=13 Score=41.20 Aligned_cols=58 Identities=9% Similarity=0.083 Sum_probs=30.5
Q ss_pred CHHHHHHHHHhccccCCCccEEEEccccccCCC---CChHHHHHHHHhhCC-----CCCcEEEEec
Q 008605 403 TPGRFMFLIKEGILQLINLRCAILDEVDILFND---EDFEVALQSLISSSP-----VTAQYLFVTA 460 (560)
Q Consensus 403 TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d---~~f~~~l~~Il~~~~-----~~~Q~IllSA 460 (560)
|+..+...+++-......+++||||-.|.|... ......+..|.+.+. .++.+|++|.
T Consensus 312 ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK~lAkel~ipVi~LsQ 377 (464)
T PRK08840 312 TPTEVRSRARRIAREHGGLSMIMVDYLQLMRVPALSDNRTLEIAEISRSLKALAKELNVPVVALSQ 377 (464)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEccHHhcCCCCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEe
Confidence 344554433332112235889999999988521 122333444433321 3677777773
No 406
>PRK08760 replicative DNA helicase; Provisional
Probab=83.34 E-value=5.5 Score=44.16 Aligned_cols=137 Identities=15% Similarity=0.166 Sum_probs=63.6
Q ss_pred CcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEE-eCCc
Q 008605 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV-TGGF 384 (560)
Q Consensus 306 ~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l-~gg~ 384 (560)
.=++|.|.+|.|||...+ -+...+... .+..++|.+. ..-..|+..++..... ++....+ .|..
T Consensus 230 ~LivIaarPg~GKTafal-~iA~~~a~~----------~g~~V~~fSl-EMs~~ql~~Rl~a~~s---~i~~~~i~~g~l 294 (476)
T PRK08760 230 DLIILAARPAMGKTTFAL-NIAEYAAIK----------SKKGVAVFSM-EMSASQLAMRLISSNG---RINAQRLRTGAL 294 (476)
T ss_pred ceEEEEeCCCCChhHHHH-HHHHHHHHh----------cCCceEEEec-cCCHHHHHHHHHHhhC---CCcHHHHhcCCC
Confidence 346788999999997544 333333211 1223555542 2223445554433321 1111111 1222
Q ss_pred chHHHH-------HHhcCCCcEEEE-----CHHHHHHHHHhccccCCCccEEEEccccccCCC---CChHHHHHHHHhhC
Q 008605 385 RQKTQL-------ENLQEGVDVLIA-----TPGRFMFLIKEGILQLINLRCAILDEVDILFND---EDFEVALQSLISSS 449 (560)
Q Consensus 385 ~~~~~~-------~~l~~~~~IlV~-----TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d---~~f~~~l~~Il~~~ 449 (560)
. ..++ ..+. ...+.|- |++.+...+++-. .-..+++||||=.+.|... ......+..|.+.+
T Consensus 295 ~-~~e~~~~~~a~~~l~-~~~l~I~d~~~~t~~~I~~~~r~l~-~~~~~~lVvIDyLql~~~~~~~~~r~~ei~~Isr~L 371 (476)
T PRK08760 295 E-DEDWARVTGAIKMLK-ETKIFIDDTPGVSPEVLRSKCRRLK-REHDLGLIVIDYLQLMSVPGNSENRATEISEISRSL 371 (476)
T ss_pred C-HHHHHHHHHHHHHHh-cCCEEEeCCCCCCHHHHHHHHHHHH-HhcCCCEEEEecHHhcCCCCCCcccHHHHHHHHHHH
Confidence 2 1222 2222 2445544 4556655444321 1235889999999988521 12223344443332
Q ss_pred ---C--CCCcEEEEec
Q 008605 450 ---P--VTAQYLFVTA 460 (560)
Q Consensus 450 ---~--~~~Q~IllSA 460 (560)
. .++.+|++|.
T Consensus 372 K~lAkel~ipVi~lsQ 387 (476)
T PRK08760 372 KGLAKELNVPVIALSQ 387 (476)
T ss_pred HHHHHHhCCEEEEeec
Confidence 1 2566777663
No 407
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=83.29 E-value=2.9 Score=41.69 Aligned_cols=42 Identities=24% Similarity=0.282 Sum_probs=24.8
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHc-C---CcEEEEcCCCCcchhh
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVE-G---KSCILADQSGSGKTLA 321 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~-g---~dvlv~apTGSGKTla 321 (560)
++|+++-=-+.++..++- .+.++.. + .++|+.+|.|+|||..
T Consensus 21 ~~L~efiGQ~~l~~~l~i------------~i~aa~~r~~~l~h~lf~GPPG~GKTTL 66 (233)
T PF05496_consen 21 KSLDEFIGQEHLKGNLKI------------LIRAAKKRGEALDHMLFYGPPGLGKTTL 66 (233)
T ss_dssp SSCCCS-S-HHHHHHHHH------------HHHHHHCTTS---EEEEESSTTSSHHHH
T ss_pred CCHHHccCcHHHHhhhHH------------HHHHHHhcCCCcceEEEECCCccchhHH
Confidence 466666555566655432 2333332 2 3699999999999964
No 408
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.09 E-value=9.6 Score=43.69 Aligned_cols=42 Identities=21% Similarity=0.275 Sum_probs=26.2
Q ss_pred CCCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccC
Q 008605 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATL 462 (560)
Q Consensus 418 l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATl 462 (560)
+...+++||||+|.|. . .-...+..+++..+...-+|+ .+|-
T Consensus 119 ~~~~KVvIIdea~~Ls-~-~a~naLLK~LEepp~~tifIL-~tt~ 160 (614)
T PRK14971 119 IGKYKIYIIDEVHMLS-Q-AAFNAFLKTLEEPPSYAIFIL-ATTE 160 (614)
T ss_pred cCCcEEEEEECcccCC-H-HHHHHHHHHHhCCCCCeEEEE-EeCC
Confidence 4567899999999996 2 333345555555555554554 4443
No 409
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=82.94 E-value=27 Score=37.02 Aligned_cols=76 Identities=20% Similarity=0.186 Sum_probs=39.8
Q ss_pred HHHHHHHHhccccCCCccEEEEccccccCCCCChHHHHHHHHhhCC---CCCcEEEEeccCC--HHHHHHHHHhCCCCeE
Q 008605 405 GRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSP---VTAQYLFVTATLP--VEIYNKLVEVFPDCKV 479 (560)
Q Consensus 405 ~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~---~~~Q~IllSATlp--~~v~~~l~~~~~~~~~ 479 (560)
..|+..+..+.-.-+.-=.+|+||+|... .+.....+-.++.... ..+=++++|.-+. +-+...++..|.+.++
T Consensus 122 ~~lL~~L~~~~~~t~~~ViFIldEfDlf~-~h~rQtllYnlfDisqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I 200 (408)
T KOG2228|consen 122 SKLLEALKKGDETTSGKVIFILDEFDLFA-PHSRQTLLYNLFDISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVI 200 (408)
T ss_pred HHHHHHHhcCCCCCCceEEEEeehhhccc-cchhhHHHHHHHHHHhhcCCCeEEEEeeccccHHHHHHHHHHhhccccee
Confidence 34555555543333332468999999877 4555555555554432 2333555555443 3344444555555544
Q ss_pred Ee
Q 008605 480 VM 481 (560)
Q Consensus 480 i~ 481 (560)
.+
T Consensus 201 ~m 202 (408)
T KOG2228|consen 201 FM 202 (408)
T ss_pred ec
Confidence 43
No 410
>PF12846 AAA_10: AAA-like domain
Probab=82.94 E-value=1.4 Score=44.50 Aligned_cols=42 Identities=29% Similarity=0.551 Sum_probs=28.3
Q ss_pred CcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHH
Q 008605 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELAS 359 (560)
Q Consensus 306 ~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~ 359 (560)
.+++|+++||+|||.... .++..+.. .+..++|+=|..+...
T Consensus 2 ~h~~i~G~tGsGKT~~~~-~l~~~~~~-----------~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLK-NLLEQLIR-----------RGPRVVIFDPKGDYSP 43 (304)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHH-----------cCCCEEEEcCCchHHH
Confidence 589999999999997766 44444433 2456777766655443
No 411
>PRK08006 replicative DNA helicase; Provisional
Probab=82.94 E-value=14 Score=41.04 Aligned_cols=64 Identities=9% Similarity=0.113 Sum_probs=35.4
Q ss_pred CcEEEE-----CHHHHHHHHHhccccCCCccEEEEccccccCCC---CChHHHHHHHHhhCC-----CCCcEEEEec
Q 008605 397 VDVLIA-----TPGRFMFLIKEGILQLINLRCAILDEVDILFND---EDFEVALQSLISSSP-----VTAQYLFVTA 460 (560)
Q Consensus 397 ~~IlV~-----TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d---~~f~~~l~~Il~~~~-----~~~Q~IllSA 460 (560)
..+.|- |+..+...+++-......+++||||=.+.|... ......+..|.+.+. .++.+|++|-
T Consensus 308 ~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAkel~ipVi~LsQ 384 (471)
T PRK08006 308 RNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKELQVPVVALSQ 384 (471)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHccCCCCCCCcHHHHHHHHHHHHHHHHHhCCeEEEEEe
Confidence 455553 555555544432112236899999999988521 123334455543332 3677888774
No 412
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=82.84 E-value=11 Score=39.15 Aligned_cols=61 Identities=18% Similarity=0.134 Sum_probs=32.9
Q ss_pred ccEEEEccccccCCC--CChHHHHHHHH----hhC----CCCCcEEEEeccC-CHHHHHHHHHhCCCCeEEe
Q 008605 421 LRCAILDEVDILFND--EDFEVALQSLI----SSS----PVTAQYLFVTATL-PVEIYNKLVEVFPDCKVVM 481 (560)
Q Consensus 421 l~~LViDEah~ll~d--~~f~~~l~~Il----~~~----~~~~Q~IllSATl-p~~v~~~l~~~~~~~~~i~ 481 (560)
-..|.|||+|.+... .+-...-++|. -++ ..+--++++.||- |=.+...+.+.|....+|-
T Consensus 226 PSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYIP 297 (439)
T KOG0739|consen 226 PSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYIP 297 (439)
T ss_pred CcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhcceecc
Confidence 456899999987631 11222233332 222 1234578888985 4444445666665544443
No 413
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=82.62 E-value=7.8 Score=41.86 Aligned_cols=30 Identities=13% Similarity=0.286 Sum_probs=21.7
Q ss_pred hHHHHHHHHHH---HcCCcEEEEcCCCCcchhh
Q 008605 292 SQIQAMAFPPV---VEGKSCILADQSGSGKTLA 321 (560)
Q Consensus 292 t~iQ~~aip~i---l~g~dvlv~apTGSGKTla 321 (560)
.++=.++|..+ -.|+-.+|.||.|+|||..
T Consensus 153 ~~~~~rvID~l~PIGkGQR~lIvgppGvGKTTL 185 (416)
T PRK09376 153 EDLSTRIIDLIAPIGKGQRGLIVAPPKAGKTVL 185 (416)
T ss_pred cccceeeeeeecccccCceEEEeCCCCCChhHH
Confidence 44444555443 3688999999999999953
No 414
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=82.57 E-value=6.3 Score=42.25 Aligned_cols=90 Identities=17% Similarity=0.286 Sum_probs=50.0
Q ss_pred CCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCc
Q 008605 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~ 384 (560)
|.-+++.+++|+|||...+--+ ..+.. .+.+++|+.-. +-..|+......+... ..-..+...
T Consensus 82 GslvLI~G~pG~GKStLllq~a-~~~a~-----------~g~~VlYvs~E-Es~~qi~~Ra~rlg~~---~~~l~l~~e- 144 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVA-ARLAK-----------RGGKVLYVSGE-ESPEQIKLRADRLGIS---TENLYLLAE- 144 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHH-HHHHh-----------cCCeEEEEECC-cCHHHHHHHHHHcCCC---cccEEEEcc-
Confidence 4568899999999997543322 22221 13468887653 4456666666555321 111111111
Q ss_pred chHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccC
Q 008605 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILF 433 (560)
Q Consensus 385 ~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll 433 (560)
...+.+...+.. ...++||||+++.+.
T Consensus 145 -----------------~~le~I~~~i~~-----~~~~lVVIDSIq~l~ 171 (372)
T cd01121 145 -----------------TNLEDILASIEE-----LKPDLVIIDSIQTVY 171 (372)
T ss_pred -----------------CcHHHHHHHHHh-----cCCcEEEEcchHHhh
Confidence 112334444432 357899999999875
No 415
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=82.39 E-value=2.3 Score=50.73 Aligned_cols=52 Identities=23% Similarity=0.421 Sum_probs=34.8
Q ss_pred cccccccCCCHHHHHHHHHCCC---CCChHHHHHHHHHHHcCCcEEEEcCCCCcchhh
Q 008605 267 RKSFKELGCSDYMIESLKRQNF---LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLA 321 (560)
Q Consensus 267 ~~sF~~l~L~~~ll~~L~~~g~---~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla 321 (560)
...|++.|.-..+...|+++-+ ..|.-+|... +.--+-++.++|.|+|||+.
T Consensus 261 ~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~---itpPrgvL~~GppGTGkTl~ 315 (1080)
T KOG0732|consen 261 SVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFN---ITPPRGVLFHGPPGTGKTLM 315 (1080)
T ss_pred ccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcc---cCCCcceeecCCCCCchhHH
Confidence 3579999988888888877632 2222222221 22346699999999999986
No 416
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=82.25 E-value=1.3 Score=42.78 Aligned_cols=54 Identities=9% Similarity=0.203 Sum_probs=25.5
Q ss_pred CccEEEEccccccCCCCChH----HHHHHHHhhCCC-CCcEEEEeccCCHHHHHHHHHhC
Q 008605 420 NLRCAILDEVDILFNDEDFE----VALQSLISSSPV-TAQYLFVTATLPVEIYNKLVEVF 474 (560)
Q Consensus 420 ~l~~LViDEah~ll~d~~f~----~~l~~Il~~~~~-~~Q~IllSATlp~~v~~~l~~~~ 474 (560)
.=.++||||||.++....+. +.+-..+..... +.-++++|-.+ ..+-..+....
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~~-~~id~~ir~lv 137 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQSP-SQIDKFIRDLV 137 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES-G-GGB-HHHHCCE
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCCH-HHHhHHHHHHH
Confidence 44689999999998544442 222244444433 44566655554 33434444433
No 417
>PRK10436 hypothetical protein; Provisional
Probab=82.19 E-value=1.6 Score=48.17 Aligned_cols=47 Identities=19% Similarity=0.375 Sum_probs=29.5
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHH-cCCcEEEEcCCCCcchhhcHHHHHHHH
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVV-EGKSCILADQSGSGKTLAYLLPVIQRL 330 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il-~g~dvlv~apTGSGKTla~llpil~~l 330 (560)
.+|++||+++..+..|.+ .+. .+.-++|++|||||||... ..++..+
T Consensus 195 ~~L~~LG~~~~~~~~l~~---------------~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~ 242 (462)
T PRK10436 195 LDLETLGMTPAQLAQFRQ---------------ALQQPQGLILVTGPTGSGKTVTL-YSALQTL 242 (462)
T ss_pred CCHHHcCcCHHHHHHHHH---------------HHHhcCCeEEEECCCCCChHHHH-HHHHHhh
Confidence 466777777665554433 122 3345889999999999863 3445444
No 418
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=82.08 E-value=2.5 Score=48.71 Aligned_cols=153 Identities=17% Similarity=0.191 Sum_probs=88.6
Q ss_pred CCChHHHHHHHHHHHc--------CC--cEEEEc--CCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHH
Q 008605 289 LRPSQIQAMAFPPVVE--------GK--SCILAD--QSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAE 356 (560)
Q Consensus 289 ~~pt~iQ~~aip~il~--------g~--dvlv~a--pTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~Ptre 356 (560)
.+++..|.+|+-.+.+ |. -.||-- ..|-|.|.+-+ |+...++ ...++|.+.-+..
T Consensus 263 g~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgi--IfeNyLk-----------GRKrAlW~SVSsD 329 (1300)
T KOG1513|consen 263 GHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGI--IFENYLK-----------GRKRALWFSVSSD 329 (1300)
T ss_pred cchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEE--Eehhhhc-----------ccceeEEEEeccc
Confidence 3566778888755443 22 244433 44555666543 3333332 2457999999999
Q ss_pred HHHHHHHHHHhhhcCCCCceEEEEe----CCcchHHHHHHhcCCCcEEEECHHHHHHHHH---------------hcccc
Q 008605 357 LASQVLSNCRSLSKCGVPFRSMVVT----GGFRQKTQLENLQEGVDVLIATPGRFMFLIK---------------EGILQ 417 (560)
Q Consensus 357 La~Qi~~~l~~l~~~~~~i~v~~l~----gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~---------------~~~~~ 417 (560)
|--+..+.++.++. ..|.|..+. +..+.++. ... .--||++|.-.|.--.+ --.-.
T Consensus 330 LKfDAERDL~DigA--~~I~V~alnK~KYakIss~en-~n~--krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~ 404 (1300)
T KOG1513|consen 330 LKFDAERDLRDIGA--TGIAVHALNKFKYAKISSKEN-TNT--KRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGED 404 (1300)
T ss_pred cccchhhchhhcCC--CCccceehhhccccccccccc-CCc--cceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhc
Confidence 98888888888875 346655442 11111100 001 13599999876652211 10111
Q ss_pred CCCccEEEEccccccCC--------CCChHHHHHHHHhhCCCCCcEEEEeccC
Q 008605 418 LINLRCAILDEVDILFN--------DEDFEVALQSLISSSPVTAQYLFVTATL 462 (560)
Q Consensus 418 l~~l~~LViDEah~ll~--------d~~f~~~l~~Il~~~~~~~Q~IllSATl 462 (560)
+ =.+||+||||.--+ ....+..+-.+.+.+| +.+++-.|||=
T Consensus 405 f--eGvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP-~ARVVYASATG 454 (1300)
T KOG1513|consen 405 F--EGVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLP-NARVVYASATG 454 (1300)
T ss_pred c--ceeEEehhhhhhcccccccCCCcCcccHhHHHHHHhCC-CceEEEeeccC
Confidence 2 24699999997642 1125566677777776 66788889985
No 419
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=81.79 E-value=1.3 Score=47.23 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=18.8
Q ss_pred cCCcEEEEcCCCCcchhhcHHHHHHHH
Q 008605 304 EGKSCILADQSGSGKTLAYLLPVIQRL 330 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~llpil~~l 330 (560)
.+.-++|++|||||||... -.++..+
T Consensus 133 ~~glilI~GpTGSGKTTtL-~aLl~~i 158 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLL-AAIIREL 158 (358)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHH
Confidence 4567999999999999753 3344444
No 420
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=81.76 E-value=1.8 Score=49.02 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=17.5
Q ss_pred CcEEEEcCCCCcchhhcHHHHHHHH
Q 008605 306 KSCILADQSGSGKTLAYLLPVIQRL 330 (560)
Q Consensus 306 ~dvlv~apTGSGKTla~llpil~~l 330 (560)
.-+++++|||||||... ..++..+
T Consensus 317 Glilv~G~tGSGKTTtl-~a~l~~~ 340 (564)
T TIGR02538 317 GMVLVTGPTGSGKTVSL-YTALNIL 340 (564)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHhh
Confidence 35789999999999763 3455444
No 421
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=81.76 E-value=1.2 Score=51.40 Aligned_cols=49 Identities=14% Similarity=0.274 Sum_probs=37.0
Q ss_pred CcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhh
Q 008605 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (560)
Q Consensus 306 ~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l 368 (560)
.+++++||||||||..|++|-+.... ..+||+=|--|+...+....++.
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~~--------------gS~VV~DpKGE~~~~Ta~~R~~~ 188 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTFK--------------GSVIALDVKGELFELTSRARKAS 188 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcCC--------------CCEEEEeCCchHHHHHHHHHHhC
Confidence 58999999999999999999865421 13777778888877766655543
No 422
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=81.72 E-value=7.6 Score=37.48 Aligned_cols=38 Identities=24% Similarity=0.356 Sum_probs=24.7
Q ss_pred CCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCC
Q 008605 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPT 354 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~Pt 354 (560)
|.=+.+.+++|+|||...+-.+.+... .+..++|+.-.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~------------~g~~v~yi~~e 49 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAAR------------QGKKVVYIDTE 49 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh------------CCCeEEEEECC
Confidence 455789999999999865443333321 13467777664
No 423
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=81.63 E-value=1.8 Score=41.41 Aligned_cols=33 Identities=30% Similarity=0.275 Sum_probs=24.8
Q ss_pred CChHHHHHHHHH-HHcCCcEEEEcCCCCcchhhc
Q 008605 290 RPSQIQAMAFPP-VVEGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 290 ~pt~iQ~~aip~-il~g~dvlv~apTGSGKTla~ 322 (560)
..++-|...+.. +..|..+++++|||||||...
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 355666666655 446788999999999999753
No 424
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=81.17 E-value=8.5 Score=38.24 Aligned_cols=58 Identities=22% Similarity=0.284 Sum_probs=30.1
Q ss_pred EEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEc---CCHHHHHHHHHHH
Q 008605 308 CILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILA---PTAELASQVLSNC 365 (560)
Q Consensus 308 vlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~---PtreLa~Qi~~~l 365 (560)
.++.+|.|+|||...+--++.......+.........+.+++|+. |..++..++....
T Consensus 4 ~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~ 64 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAIL 64 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHH
Confidence 578999999999875544443322111110001122455788887 3344444444333
No 425
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=80.92 E-value=24 Score=33.61 Aligned_cols=136 Identities=19% Similarity=0.179 Sum_probs=60.2
Q ss_pred EEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchH
Q 008605 308 CILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387 (560)
Q Consensus 308 vlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~ 387 (560)
+.|....|=|||.+++--++..+ ..+.+++|+-=.+-- -...++..+... .++.....--+....
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~------------G~G~rV~ivQFlKg~--~~~GE~~~l~~l-~~~~~~~~g~~f~~~ 70 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAA------------GHGMRVLIVQFLKGG--RYSGELKALKKL-PNVEIERFGKGFVWR 70 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHH------------CTT--EEEEESS--S--S--HHHHHHGGG-T--EEEE--TT----
T ss_pred EEEEeCCCCCchHHHHHHHHHHH------------hCCCEEEEEEEecCC--CCcCHHHHHHhC-CeEEEEEcCCccccc
Confidence 45677889999998776666555 346678887654440 011222222221 123322211111110
Q ss_pred HHHHHhcCCCcEEEECHHHHHHHHHh--ccccCCCccEEEEccccccCCCCCh--HHHHHHHHhhCCCCCcEEEEeccCC
Q 008605 388 TQLENLQEGVDVLIATPGRFMFLIKE--GILQLINLRCAILDEVDILFNDEDF--EVALQSLISSSPVTAQYLFVTATLP 463 (560)
Q Consensus 388 ~~~~~l~~~~~IlV~TP~~L~~ll~~--~~~~l~~l~~LViDEah~ll~d~~f--~~~l~~Il~~~~~~~Q~IllSATlp 463 (560)
..... .+ .......+.. ..+.-..+++||+||+-..+ +.++ ...+..+++..|...-+|+.--..|
T Consensus 71 ~~~~~----~~-----~~~~~~~~~~a~~~i~~~~~dlvILDEi~~a~-~~gll~~~~v~~~l~~rp~~~evVlTGR~~~ 140 (172)
T PF02572_consen 71 MNEEE----ED-----RAAAREGLEEAKEAISSGEYDLVILDEINYAV-DYGLLSEEEVLDLLENRPESLEVVLTGRNAP 140 (172)
T ss_dssp GGGHH----HH-----HHHHHHHHHHHHHHTT-TT-SEEEEETHHHHH-HTTSS-HHHHHHHHHTS-TT-EEEEE-SS--
T ss_pred CCCcH----HH-----HHHHHHHHHHHHHHHhCCCCCEEEEcchHHHh-HCCCccHHHHHHHHHcCCCCeEEEEECCCCC
Confidence 00000 00 1111222222 23334578999999998766 4443 3455666676666666676666777
Q ss_pred HHHHH
Q 008605 464 VEIYN 468 (560)
Q Consensus 464 ~~v~~ 468 (560)
+.+.+
T Consensus 141 ~~l~e 145 (172)
T PF02572_consen 141 EELIE 145 (172)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 426
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=80.87 E-value=1 Score=46.91 Aligned_cols=18 Identities=39% Similarity=0.508 Sum_probs=15.5
Q ss_pred CcEEEEcCCCCcchhhcH
Q 008605 306 KSCILADQSGSGKTLAYL 323 (560)
Q Consensus 306 ~dvlv~apTGSGKTla~l 323 (560)
.|+++.+|||||||+.+.
T Consensus 98 SNILLiGPTGsGKTlLAq 115 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQ 115 (408)
T ss_pred ccEEEECCCCCcHHHHHH
Confidence 589999999999998643
No 427
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=80.78 E-value=5.1 Score=46.85 Aligned_cols=52 Identities=21% Similarity=0.380 Sum_probs=29.0
Q ss_pred ccccccCCCHHHHHHHHHC---CCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhc
Q 008605 268 KSFKELGCSDYMIESLKRQ---NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~---g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~ 322 (560)
.+|++++..+.+.+.|.+. .+..+..++..- +...+.+++.+|+|+|||+..
T Consensus 450 ~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g---~~~~~giLL~GppGtGKT~la 504 (733)
T TIGR01243 450 VRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMG---IRPPKGVLLFGPPGTGKTLLA 504 (733)
T ss_pred cchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEECCCCCCHHHHH
Confidence 4677776666666665442 112111111110 112356999999999999753
No 428
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=80.74 E-value=8.7 Score=40.36 Aligned_cols=41 Identities=12% Similarity=0.161 Sum_probs=28.0
Q ss_pred CCCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEec
Q 008605 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTA 460 (560)
Q Consensus 418 l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSA 460 (560)
....+++||||+|.|. ..-...+...++..|..+.+|+.+.
T Consensus 108 ~~~~kvviI~~a~~~~--~~a~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 108 ESNKKVYIIEHADKMT--ASAANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred ccCceEEEeehHhhhC--HHHHHHHHHHhcCCCCCceEEEEeC
Confidence 4567899999999996 3344455566666666666776554
No 429
>PRK05636 replicative DNA helicase; Provisional
Probab=80.51 E-value=7.3 Score=43.55 Aligned_cols=42 Identities=5% Similarity=0.184 Sum_probs=24.7
Q ss_pred CCccEEEEccccccCCCC---ChHHHHHHHHhhC-----CCCCcEEEEec
Q 008605 419 INLRCAILDEVDILFNDE---DFEVALQSLISSS-----PVTAQYLFVTA 460 (560)
Q Consensus 419 ~~l~~LViDEah~ll~d~---~f~~~l~~Il~~~-----~~~~Q~IllSA 460 (560)
..+++||||=.|.|.... .....+..|.+.+ ..++.+|++|.
T Consensus 374 ~~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK~lAkel~ipVi~lsQ 423 (505)
T PRK05636 374 HDLKLIVVDYLQLMSSGKRVESRQQEVSEFSRQLKLLAKELDVPLIAISQ 423 (505)
T ss_pred cCCCEEEEcchHhcCCCCCCCcHHHHHHHHHHHHHHHHHHhCCeEEEEee
Confidence 358999999999986211 1223344443332 13667777764
No 430
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=80.48 E-value=32 Score=40.05 Aligned_cols=181 Identities=17% Similarity=0.201 Sum_probs=96.7
Q ss_pred CCHHHHHHHHHC---CCCCChHHHHHHHHHHH--cCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEE
Q 008605 275 CSDYMIESLKRQ---NFLRPSQIQAMAFPPVV--EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVV 349 (560)
Q Consensus 275 L~~~ll~~L~~~---g~~~pt~iQ~~aip~il--~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aL 349 (560)
|-+.|.+.|+-. |+..++.-=.+.+.... .|-.+|+.-..|-|||+-.+- .+..++.. .....+|
T Consensus 247 lapqla~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVis-F~diflRh---------T~AKtVL 316 (1387)
T KOG1016|consen 247 LAPQLAHVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVIS-FSDIFLRH---------TKAKTVL 316 (1387)
T ss_pred ehhhhHhhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEee-hhHHHhhc---------CccceEE
Confidence 556666666432 44444444444444433 456788888999999987442 33333322 1233589
Q ss_pred EEcCCHHHHHHHHHHHHhhhc-----CC---CCceEEEEeCCcchHHHHHHh-c---CCCcEEEECHHHHHHHHHh----
Q 008605 350 ILAPTAELASQVLSNCRSLSK-----CG---VPFRSMVVTGGFRQKTQLENL-Q---EGVDVLIATPGRFMFLIKE---- 413 (560)
Q Consensus 350 il~PtreLa~Qi~~~l~~l~~-----~~---~~i~v~~l~gg~~~~~~~~~l-~---~~~~IlV~TP~~L~~ll~~---- 413 (560)
+|+|...|-+ .+.++..+.- .+ ..+.|.++..+.....+...+ . ...-|++.-.+.+.-++..
T Consensus 317 ~ivPiNTlQN-WlsEfnmWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~~Wv~~GGVlLvGYemfRLL~lk~~~~ 395 (1387)
T KOG1016|consen 317 VIVPINTLQN-WLSEFNMWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAKVIEQWVQTGGVLLVGYEMFRLLILKTLPK 395 (1387)
T ss_pred EEEehHHHHH-HHHHhhhhcCCCcccCCCccceeEEEEecCchhhHHHHHHHHHHHhccCCEEEehHHHHHHHHHhcccc
Confidence 9999887643 3344433321 01 235566666665443332222 1 2234666666655433221
Q ss_pred --------cc-----cc-------------------CCCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEecc
Q 008605 414 --------GI-----LQ-------------------LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTAT 461 (560)
Q Consensus 414 --------~~-----~~-------------------l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSAT 461 (560)
+. +. -..-+++|+||-|++-+ ....+...++.+...+++++....
T Consensus 396 ~grpkkt~kr~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN---~~A~iS~aLk~IrtrRRiVLTGYP 472 (1387)
T KOG1016|consen 396 KGRPKKTLKRISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKN---ITAEISMALKAIRTRRRIVLTGYP 472 (1387)
T ss_pred cCCccccccccCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceecc---chHHHHHHHHHhhhceeEEEeccc
Confidence 00 00 11246899999999972 233444455555656677776666
Q ss_pred CCHHHHHH
Q 008605 462 LPVEIYNK 469 (560)
Q Consensus 462 lp~~v~~~ 469 (560)
+-..+.++
T Consensus 473 LQNNLlEY 480 (1387)
T KOG1016|consen 473 LQNNLLEY 480 (1387)
T ss_pred cccchHHH
Confidence 65554443
No 431
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=80.20 E-value=13 Score=38.82 Aligned_cols=52 Identities=8% Similarity=0.174 Sum_probs=32.3
Q ss_pred HHHHHHHhccccCCCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEecc
Q 008605 406 RFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTAT 461 (560)
Q Consensus 406 ~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSAT 461 (560)
.+...+....+ ....+++|||+||.|. ..-...+.++++..| +..+|+++..
T Consensus 111 ~i~~~l~~~p~-~~~~kVvII~~ae~m~--~~aaNaLLK~LEEPp-~~~fILi~~~ 162 (314)
T PRK07399 111 EIKRFLSRPPL-EAPRKVVVIEDAETMN--EAAANALLKTLEEPG-NGTLILIAPS 162 (314)
T ss_pred HHHHHHccCcc-cCCceEEEEEchhhcC--HHHHHHHHHHHhCCC-CCeEEEEECC
Confidence 34444443322 3568899999999996 344555666666666 6666666543
No 432
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=80.05 E-value=10 Score=36.67 Aligned_cols=49 Identities=16% Similarity=0.269 Sum_probs=32.3
Q ss_pred CccEEEEccccccCCCCChH--HHHHHHHhhCCCCCcEEEEeccCCHHHHHH
Q 008605 420 NLRCAILDEVDILFNDEDFE--VALQSLISSSPVTAQYLFVTATLPVEIYNK 469 (560)
Q Consensus 420 ~l~~LViDEah~ll~d~~f~--~~l~~Il~~~~~~~Q~IllSATlp~~v~~~ 469 (560)
..++||+||+-..+ ..++. ..+..++..-|...-+|+.--..|+.+.+.
T Consensus 122 ~ydlviLDEl~~al-~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ 172 (198)
T COG2109 122 KYDLVILDELNYAL-RYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIEL 172 (198)
T ss_pred CCCEEEEehhhHHH-HcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHH
Confidence 68899999999877 44533 345555665555555555555678877653
No 433
>PRK04841 transcriptional regulator MalT; Provisional
Probab=79.96 E-value=19 Score=42.69 Aligned_cols=41 Identities=12% Similarity=0.377 Sum_probs=34.4
Q ss_pred cEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCC
Q 008605 422 RCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLP 463 (560)
Q Consensus 422 ~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp 463 (560)
-+||||++|.+- +......+..+++..+....+|+.|-+.|
T Consensus 123 ~~lvlDD~h~~~-~~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 123 LYLVIDDYHLIT-NPEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred EEEEEeCcCcCC-ChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 479999999986 56677789999999998899988887754
No 434
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.86 E-value=5.3 Score=37.74 Aligned_cols=20 Identities=35% Similarity=0.506 Sum_probs=15.7
Q ss_pred EEEEcCCCCcchhhcHHHHH
Q 008605 308 CILADQSGSGKTLAYLLPVI 327 (560)
Q Consensus 308 vlv~apTGSGKTla~llpil 327 (560)
.|+.+|.|||||..|.....
T Consensus 5 ~IvaG~NGsGKstv~~~~~~ 24 (187)
T COG4185 5 DIVAGPNGSGKSTVYASTLA 24 (187)
T ss_pred EEEecCCCCCceeeeeccch
Confidence 46789999999998865443
No 435
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=79.82 E-value=0.92 Score=51.22 Aligned_cols=41 Identities=24% Similarity=0.243 Sum_probs=27.3
Q ss_pred CCCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEe
Q 008605 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459 (560)
Q Consensus 418 l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllS 459 (560)
+.+-.++|+|||-.-+ |..-+..+...+..+.+++.+++.+
T Consensus 481 l~~~~ILILDEaTSal-D~~tE~~I~~~l~~l~~~rT~iiIa 521 (567)
T COG1132 481 LRNPPILILDEATSAL-DTETEALIQDALKKLLKGRTTLIIA 521 (567)
T ss_pred hcCCCEEEEecccccc-CHHhHHHHHHHHHHHhcCCEEEEEe
Confidence 4555789999999888 6666666666665444454444433
No 436
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=79.71 E-value=2.5 Score=46.96 Aligned_cols=35 Identities=23% Similarity=0.415 Sum_probs=20.8
Q ss_pred HHHHHHHHHc-CCc-EEEEcCCCCcchhhcHHHHHHHH
Q 008605 295 QAMAFPPVVE-GKS-CILADQSGSGKTLAYLLPVIQRL 330 (560)
Q Consensus 295 Q~~aip~il~-g~d-vlv~apTGSGKTla~llpil~~l 330 (560)
|.+.|..+.. .+. +++++|||||||... ..++..+
T Consensus 230 ~~~~l~~~~~~~~GlilitGptGSGKTTtL-~a~L~~l 266 (486)
T TIGR02533 230 LLSRFERLIRRPHGIILVTGPTGSGKTTTL-YAALSRL 266 (486)
T ss_pred HHHHHHHHHhcCCCEEEEEcCCCCCHHHHH-HHHHhcc
Confidence 3333333433 333 689999999999763 2344443
No 437
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=79.60 E-value=4.7 Score=42.66 Aligned_cols=19 Identities=21% Similarity=0.356 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCCcchhhc
Q 008605 304 EGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~ 322 (560)
.+..+++++|||||||...
T Consensus 121 ~~g~ili~G~tGSGKTT~l 139 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTL 139 (343)
T ss_pred cCcEEEEECCCCCCHHHHH
Confidence 3567999999999999763
No 438
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=79.60 E-value=7.8 Score=40.63 Aligned_cols=68 Identities=15% Similarity=0.196 Sum_probs=37.4
Q ss_pred CcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEE-c-----------CCHHHHHHHHHHHHhhhcCCC
Q 008605 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVIL-A-----------PTAELASQVLSNCRSLSKCGV 373 (560)
Q Consensus 306 ~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil-~-----------PtreLa~Qi~~~l~~l~~~~~ 373 (560)
|=+++.+|+|+|||-. .-++.+++.-+ ......++++| . -+--|+.++++.+.++... .
T Consensus 178 RliLlhGPPGTGKTSL-CKaLaQkLSIR-------~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d-~ 248 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSL-CKALAQKLSIR-------TNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVED-R 248 (423)
T ss_pred eEEEEeCCCCCChhHH-HHHHHHhheee-------ecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhC-C
Confidence 4478999999999942 33344443221 12223333332 1 2234777788888887764 3
Q ss_pred CceEEEEeC
Q 008605 374 PFRSMVVTG 382 (560)
Q Consensus 374 ~i~v~~l~g 382 (560)
+.-|.++..
T Consensus 249 ~~lVfvLID 257 (423)
T KOG0744|consen 249 GNLVFVLID 257 (423)
T ss_pred CcEEEEEeH
Confidence 444555443
No 439
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=79.54 E-value=1.8 Score=43.82 Aligned_cols=44 Identities=25% Similarity=0.418 Sum_probs=29.1
Q ss_pred HHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHH
Q 008605 302 VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAEL 357 (560)
Q Consensus 302 il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreL 357 (560)
+..+.+++++++||||||... -.++..+... ..+++++-.+.|+
T Consensus 124 v~~~~~ili~G~tGSGKTT~l-~all~~i~~~-----------~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 124 VRGRGNILISGPTGSGKTTLL-NALLEEIPPE-----------DERIVTIEDPPEL 167 (270)
T ss_dssp HHTTEEEEEEESTTSSHHHHH-HHHHHHCHTT-----------TSEEEEEESSS-S
T ss_pred cccceEEEEECCCccccchHH-HHHhhhcccc-----------ccceEEeccccce
Confidence 455789999999999999753 4444443221 2467777777665
No 440
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=79.42 E-value=2.2 Score=43.50 Aligned_cols=35 Identities=20% Similarity=0.347 Sum_probs=21.5
Q ss_pred HHHHHHHHH-cC-CcEEEEcCCCCcchhhcHHHHHHHH
Q 008605 295 QAMAFPPVV-EG-KSCILADQSGSGKTLAYLLPVIQRL 330 (560)
Q Consensus 295 Q~~aip~il-~g-~dvlv~apTGSGKTla~llpil~~l 330 (560)
|.+.|..++ .. ..++++++||||||... ..++..+
T Consensus 68 ~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~~i 104 (264)
T cd01129 68 NLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSEL 104 (264)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHhhh
Confidence 444444333 23 35889999999999753 3344443
No 441
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=79.40 E-value=1.7 Score=41.04 Aligned_cols=45 Identities=18% Similarity=0.098 Sum_probs=28.7
Q ss_pred HHHHhcCCCcEEEECHHHHHHHHHhcccc--CCCccEEEEccccccC
Q 008605 389 QLENLQEGVDVLIATPGRFMFLIKEGILQ--LINLRCAILDEVDILF 433 (560)
Q Consensus 389 ~~~~l~~~~~IlV~TP~~L~~ll~~~~~~--l~~l~~LViDEah~ll 433 (560)
..+.....++|||++..-|++-..+.... ...-.+|||||||.+.
T Consensus 112 ~~r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~ 158 (174)
T PF06733_consen 112 LARELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLE 158 (174)
T ss_dssp HHHHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCG
T ss_pred HHHHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchH
Confidence 33444556999999998887543332221 2234689999999886
No 442
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=79.07 E-value=8.2 Score=37.53 Aligned_cols=48 Identities=19% Similarity=0.245 Sum_probs=30.6
Q ss_pred cEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCCChHHHHHHHHhh
Q 008605 398 DVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448 (560)
Q Consensus 398 ~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~l~~Il~~ 448 (560)
-++|-.+..+...+......+. +++|.||||+.+- ......+..|...
T Consensus 61 A~~i~~~~~i~~~i~~~~~~~~-~~~v~IDEaQF~~--~~~v~~l~~lad~ 108 (201)
T COG1435 61 AVVIPSDTDIFDEIAALHEKPP-VDCVLIDEAQFFD--EELVYVLNELADR 108 (201)
T ss_pred ceecCChHHHHHHHHhcccCCC-cCEEEEehhHhCC--HHHHHHHHHHHhh
Confidence 3566677777776665433222 8899999998775 4455555555554
No 443
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=78.75 E-value=11 Score=41.69 Aligned_cols=90 Identities=19% Similarity=0.263 Sum_probs=51.0
Q ss_pred CCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCc
Q 008605 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~ 384 (560)
|.-+++.+++|+|||...+-- +..+.. .+.+++|+.- .+-..|+...+..+.. ...-..+...
T Consensus 94 GsvilI~G~pGsGKTTL~lq~-a~~~a~-----------~g~kvlYvs~-EEs~~qi~~ra~rlg~---~~~~l~~~~e- 156 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQV-ACQLAK-----------NQMKVLYVSG-EESLQQIKMRAIRLGL---PEPNLYVLSE- 156 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHH-HHHHHh-----------cCCcEEEEEC-cCCHHHHHHHHHHcCC---ChHHeEEcCC-
Confidence 456889999999999764433 222221 1335888875 3555677666655532 1111111111
Q ss_pred chHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccC
Q 008605 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILF 433 (560)
Q Consensus 385 ~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll 433 (560)
.+.+.+...+.. ...++||||.+..+.
T Consensus 157 -----------------~~~~~I~~~i~~-----~~~~~vVIDSIq~l~ 183 (454)
T TIGR00416 157 -----------------TNWEQICANIEE-----ENPQACVIDSIQTLY 183 (454)
T ss_pred -----------------CCHHHHHHHHHh-----cCCcEEEEecchhhc
Confidence 123445544443 246789999998775
No 444
>CHL00176 ftsH cell division protein; Validated
Probab=78.56 E-value=9.6 Score=43.87 Aligned_cols=18 Identities=39% Similarity=0.560 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCCcchhhc
Q 008605 305 GKSCILADQSGSGKTLAY 322 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~ 322 (560)
.+.+++.+|+|+|||+..
T Consensus 216 p~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLA 233 (638)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 357999999999999753
No 445
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=78.55 E-value=4.5 Score=42.83 Aligned_cols=63 Identities=19% Similarity=0.270 Sum_probs=37.4
Q ss_pred HHHHHHCCCCCChHHHHHHHHHH-HcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHH
Q 008605 280 IESLKRQNFLRPSQIQAMAFPPV-VEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAEL 357 (560)
Q Consensus 280 l~~L~~~g~~~pt~iQ~~aip~i-l~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreL 357 (560)
+..|.+.|+ +++.+...+..+ ..+.+++++++||||||... -.++..+ ....+.+++--+.||
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll-~al~~~i------------~~~~riv~iEd~~El 217 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTLL-SALLALV------------APDERIVLVEDAAEL 217 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHH-HHHHccC------------CCCCcEEEECCccee
Confidence 344445554 445566665554 45679999999999999643 2233222 122356666666666
No 446
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=78.53 E-value=9.8 Score=38.56 Aligned_cols=52 Identities=19% Similarity=0.208 Sum_probs=30.9
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHH---HHHHHHcCC-cEEEEcCCCCcchhhcH
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAM---AFPPVVEGK-SCILADQSGSGKTLAYL 323 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~---aip~il~g~-dvlv~apTGSGKTla~l 323 (560)
--|+.++++..+...+.- .+.+.++. +-+.+..|+ =+.++++-|||||..--
T Consensus 14 ~g~~~~pf~~~~~~~~~~----~~a~h~e~l~~l~~~i~d~qg~~~vtGevGsGKTv~~R 69 (269)
T COG3267 14 FGFSRLPFSWDIQPGLDY----WAADHNEALLMLHAAIADGQGILAVTGEVGSGKTVLRR 69 (269)
T ss_pred hhhccCCCccchhhhhhh----hhhhhhHHHHHHHHHHhcCCceEEEEecCCCchhHHHH
Confidence 346666766655555432 12222222 223455666 57789999999998765
No 447
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=78.29 E-value=31 Score=41.94 Aligned_cols=123 Identities=20% Similarity=0.179 Sum_probs=88.2
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHH----------------------------HHHHhhccCCCCCCCC
Q 008605 295 QAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRL----------------------------RQEELQGLSKSTSGSP 346 (560)
Q Consensus 295 Q~~aip~il~g~dvlv~apTGSGKTla~llpil~~l----------------------------~~~~~~~~~~~~~~~~ 346 (560)
|++.+..+...=|||--+.|--=.||-..+.-+.-+ ..++ -.++.
T Consensus 732 ~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~~~ireAI~RE-------l~RgG 804 (1139)
T COG1197 732 HKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEYDDLLIREAILRE-------LLRGG 804 (1139)
T ss_pred HHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEEEecCChHHHHHHHHHH-------HhcCC
Confidence 666666666666666666666666655433322211 1111 14688
Q ss_pred EEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHh----cCCCcEEEECHHHHHHHHHhccccCCCcc
Q 008605 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL----QEGVDVLIATPGRFMFLIKEGILQLINLR 422 (560)
Q Consensus 347 ~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~ll~~~~~~l~~l~ 422 (560)
++.||.|..+-..++...++.+. +..++.+.+|.....+..+.+ ....||+|||. +-...++..+..
T Consensus 805 QvfYv~NrV~~Ie~~~~~L~~LV---PEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TT------IIEtGIDIPnAN 875 (1139)
T COG1197 805 QVFYVHNRVESIEKKAERLRELV---PEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTT------IIETGIDIPNAN 875 (1139)
T ss_pred EEEEEecchhhHHHHHHHHHHhC---CceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEee------eeecCcCCCCCc
Confidence 99999999999999999999985 678999999998876654444 35699999993 334567888999
Q ss_pred EEEEccccccC
Q 008605 423 CAILDEVDILF 433 (560)
Q Consensus 423 ~LViDEah~ll 433 (560)
.|||+-||++.
T Consensus 876 TiIIe~AD~fG 886 (1139)
T COG1197 876 TIIIERADKFG 886 (1139)
T ss_pred eEEEecccccc
Confidence 99999999875
No 448
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=77.99 E-value=1.9 Score=49.70 Aligned_cols=48 Identities=10% Similarity=0.091 Sum_probs=36.1
Q ss_pred CcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHh
Q 008605 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS 367 (560)
Q Consensus 306 ~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~ 367 (560)
.++++.||||||||..+++|-+.... .-+||+=|--|+...+....++
T Consensus 145 ~hvLviApTrSGKgvg~VIPnLL~~~--------------~S~VV~D~KGEl~~~Ta~~R~~ 192 (663)
T PRK13876 145 EHVLCFAPTRSGKGVGLVVPTLLTWP--------------GSAIVHDIKGENWQLTAGFRAR 192 (663)
T ss_pred ceEEEEecCCCCcceeEehhhHHhCC--------------CCEEEEeCcchHHHHHHHHHHh
Confidence 68999999999999999999875431 1377777777777666655444
No 449
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=77.74 E-value=16 Score=41.54 Aligned_cols=75 Identities=19% Similarity=0.266 Sum_probs=55.5
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHh---c-CCCcEEEECHHHHHHHHHhccccCC
Q 008605 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLI 419 (560)
Q Consensus 344 ~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l---~-~~~~IlV~TP~~L~~ll~~~~~~l~ 419 (560)
.+.++||.|+|+..+.++++.+... ++.+..++|+....++...+ . ...+|||||- ++. ..+++.
T Consensus 256 ~~~k~LVF~nt~~~ae~l~~~L~~~-----g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTd-----v~a-rGIDip 324 (572)
T PRK04537 256 EGARTMVFVNTKAFVERVARTLERH-----GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATD-----VAA-RGLHID 324 (572)
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHHc-----CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEeh-----hhh-cCCCcc
Confidence 3557999999999999999888654 46889999998765554333 2 3589999993 333 356788
Q ss_pred CccEEEEccc
Q 008605 420 NLRCAILDEV 429 (560)
Q Consensus 420 ~l~~LViDEa 429 (560)
+++++|.-++
T Consensus 325 ~V~~VInyd~ 334 (572)
T PRK04537 325 GVKYVYNYDL 334 (572)
T ss_pred CCCEEEEcCC
Confidence 9998876543
No 450
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=77.73 E-value=2.4 Score=48.70 Aligned_cols=46 Identities=17% Similarity=0.177 Sum_probs=35.8
Q ss_pred CcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHH
Q 008605 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (560)
Q Consensus 306 ~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l 365 (560)
.+++++||||||||..+++|-+... +..+||+=|--|+...+....
T Consensus 176 ~HvlviapTgSGKgvg~ViPnLL~~--------------~~S~VV~D~KGE~~~~Tag~R 221 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGLVVPTLLSW--------------GHSSVITDLKGELWALTAGWR 221 (636)
T ss_pred ceEEEEecCCCCCceEEEccchhhC--------------CCCEEEEeCcHHHHHHHHHHH
Confidence 6899999999999999999987532 224888888888876655544
No 451
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=77.66 E-value=10 Score=38.30 Aligned_cols=19 Identities=21% Similarity=0.414 Sum_probs=16.6
Q ss_pred HHcCCcEEEEcCCCCcchh
Q 008605 302 VVEGKSCILADQSGSGKTL 320 (560)
Q Consensus 302 il~g~dvlv~apTGSGKTl 320 (560)
+-.|+.+++.++.|+|||.
T Consensus 13 i~~Gqr~~I~G~~G~GKTT 31 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTT 31 (249)
T ss_pred cCCCCEEEEECCCCCCHHH
Confidence 3478899999999999995
No 452
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=77.60 E-value=14 Score=43.34 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=15.5
Q ss_pred CcEEEEcCCCCcchhhcH
Q 008605 306 KSCILADQSGSGKTLAYL 323 (560)
Q Consensus 306 ~dvlv~apTGSGKTla~l 323 (560)
.|+++.+|+|+|||....
T Consensus 204 ~n~lL~G~pG~GKT~l~~ 221 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAE 221 (731)
T ss_pred CceEEECCCCCCHHHHHH
Confidence 589999999999997643
No 453
>PRK06321 replicative DNA helicase; Provisional
Probab=77.57 E-value=16 Score=40.56 Aligned_cols=63 Identities=11% Similarity=0.112 Sum_probs=34.3
Q ss_pred CcEEEE-----CHHHHHHHHHhccccCCCccEEEEccccccCCC------CChHHHHHHHHhhCC-----CCCcEEEEec
Q 008605 397 VDVLIA-----TPGRFMFLIKEGILQLINLRCAILDEVDILFND------EDFEVALQSLISSSP-----VTAQYLFVTA 460 (560)
Q Consensus 397 ~~IlV~-----TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d------~~f~~~l~~Il~~~~-----~~~Q~IllSA 460 (560)
..+.|- |...+...+++-.. -..+++||||=.+.|... ......+..|.+.+. .++.+|++|.
T Consensus 309 ~~~~idd~~~~ti~~i~~~~r~~~~-~~~~~lvvIDyLql~~~~~~~~~~~~r~~ei~~Isr~LK~lAkel~vpVi~lsQ 387 (472)
T PRK06321 309 HTLLIDDQPGLKITDLRARARRMKE-SYDIQFLIIDYLQLLSGSGNLRNSESRQTEISEISRMLKNLARELNIPILCLSQ 387 (472)
T ss_pred CCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHHcCCCCccCCcchHHHHHHHHHHHHHHHHHHhCCcEEEEee
Confidence 356554 45555544443211 235889999999988521 112234444443332 3667777665
No 454
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=77.46 E-value=2 Score=43.51 Aligned_cols=28 Identities=25% Similarity=0.307 Sum_probs=22.5
Q ss_pred HHHHHHHHcCCcEEEEcCCCCcchhhcH
Q 008605 296 AMAFPPVVEGKSCILADQSGSGKTLAYL 323 (560)
Q Consensus 296 ~~aip~il~g~dvlv~apTGSGKTla~l 323 (560)
++++..+..|+++++.+|+|+|||....
T Consensus 12 ~~~l~~l~~g~~vLL~G~~GtGKT~lA~ 39 (262)
T TIGR02640 12 SRALRYLKSGYPVHLRGPAGTGKTTLAM 39 (262)
T ss_pred HHHHHHHhcCCeEEEEcCCCCCHHHHHH
Confidence 3455567789999999999999998653
No 455
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=77.44 E-value=19 Score=37.43 Aligned_cols=40 Identities=13% Similarity=0.132 Sum_probs=25.1
Q ss_pred CCCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEe
Q 008605 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459 (560)
Q Consensus 418 l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllS 459 (560)
...-+++|||++|.|. ..-...+...++..|.++-+|+.+
T Consensus 91 ~~~~kv~iI~~ad~m~--~~a~naLLK~LEepp~~t~~il~~ 130 (313)
T PRK05564 91 EGDKKVIIIYNSEKMT--EQAQNAFLKTIEEPPKGVFIILLC 130 (313)
T ss_pred cCCceEEEEechhhcC--HHHHHHHHHHhcCCCCCeEEEEEe
Confidence 3467889999999886 233444445555555555555544
No 456
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=77.36 E-value=2.6 Score=48.42 Aligned_cols=49 Identities=24% Similarity=0.337 Sum_probs=37.3
Q ss_pred CcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhh
Q 008605 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (560)
Q Consensus 306 ~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l 368 (560)
.++++.||||+|||..+++|-+-.. +.-+||+=|--|+...+....+++
T Consensus 225 ~H~Lv~ApTgsGKt~g~VIPnLL~~--------------~gS~VV~DpKgEl~~~Ta~~R~~~ 273 (641)
T PRK13822 225 THGLVFAGSGGFKTTSVVVPTALKW--------------GGPLVVLDPSTEVAPMVSEHRRDA 273 (641)
T ss_pred ceEEEEeCCCCCccceEehhhhhcC--------------CCCEEEEeCcHHHHHHHHHHHHHC
Confidence 5899999999999999999976321 223777778888887776655544
No 457
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=76.87 E-value=2.4 Score=41.50 Aligned_cols=14 Identities=29% Similarity=0.468 Sum_probs=12.1
Q ss_pred EEEEcCCCCcchhh
Q 008605 308 CILADQSGSGKTLA 321 (560)
Q Consensus 308 vlv~apTGSGKTla 321 (560)
++|.|+.|||||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47899999999974
No 458
>PRK09165 replicative DNA helicase; Provisional
Probab=76.85 E-value=18 Score=40.35 Aligned_cols=123 Identities=15% Similarity=0.106 Sum_probs=55.3
Q ss_pred CcEEEEcCCCCcchhhcHHHHHHHHHHHHhhcc---CCCCCCCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeC
Q 008605 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGL---SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG 382 (560)
Q Consensus 306 ~dvlv~apTGSGKTla~llpil~~l~~~~~~~~---~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~g 382 (560)
.=++|.|+||+|||...+--+.+......+... ......+..++|++ ...-..|+..++..... +..... ...|
T Consensus 218 ~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fS-lEMs~~ql~~R~la~~s-~v~~~~-i~~~ 294 (497)
T PRK09165 218 DLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFS-LEMSAEQLATRILSEQS-EISSSK-IRRG 294 (497)
T ss_pred ceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEe-CcCCHHHHHHHHHHHhc-CCCHHH-HhcC
Confidence 347789999999997544333333222110000 00011244566664 33334455554433221 111111 1112
Q ss_pred CcchHHHHHHhc------CCCcEEEE-----CHHHHHHHHHhccccCCCccEEEEccccccC
Q 008605 383 GFRQKTQLENLQ------EGVDVLIA-----TPGRFMFLIKEGILQLINLRCAILDEVDILF 433 (560)
Q Consensus 383 g~~~~~~~~~l~------~~~~IlV~-----TP~~L~~ll~~~~~~l~~l~~LViDEah~ll 433 (560)
... ..++..+. ...++.|- |++.+...+++-.. -..+++||||=.+.|.
T Consensus 295 ~l~-~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~~-~~~~~lvvIDyLqli~ 354 (497)
T PRK09165 295 KIS-EEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLKR-QHGLDLLVVDYLQLIR 354 (497)
T ss_pred CCC-HHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhcc
Confidence 222 12222211 12345543 45555554443211 2358899999999886
No 459
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=76.69 E-value=59 Score=37.65 Aligned_cols=119 Identities=14% Similarity=0.178 Sum_probs=74.7
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHH---Hhc-CCCcEEEECHHHHHHHHHhccccCC
Q 008605 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLE---NLQ-EGVDVLIATPGRFMFLIKEGILQLI 419 (560)
Q Consensus 344 ~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~---~l~-~~~~IlV~TP~~L~~ll~~~~~~l~ 419 (560)
.+.++||.++|+..+..+.+.+... ++.+..++|+....+... .+. ...+|+||| .++. ..+.+.
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~-----gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t-----~~L~-rGfDiP 509 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKEL-----GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGI-----NLLR-EGLDLP 509 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhh-----ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEc-----Chhc-CCeeeC
Confidence 4678999999999999999888765 467778888766543322 222 458899998 3333 467789
Q ss_pred CccEEEEccccccCCCCChHHHHHHHHhhCC-CCCcEEEEeccCCHHHHHHHHHh
Q 008605 420 NLRCAILDEVDILFNDEDFEVALQSLISSSP-VTAQYLFVTATLPVEIYNKLVEV 473 (560)
Q Consensus 420 ~l~~LViDEah~ll~d~~f~~~l~~Il~~~~-~~~Q~IllSATlp~~v~~~l~~~ 473 (560)
.++++|+-+++...--......+.++-+... .....+++--.....+...+.+.
T Consensus 510 ~v~lVvi~DadifG~p~~~~~~iqriGRagR~~~G~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 510 EVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVIMYADKITDSMQKAIEET 564 (655)
T ss_pred CCcEEEEeCcccccCCCCHHHHHHHhcCCCCCCCCEEEEEEcCCCHHHHHHHHHH
Confidence 9999998888764311223333443322211 23455666556665555544443
No 460
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=76.48 E-value=15 Score=39.11 Aligned_cols=52 Identities=19% Similarity=0.270 Sum_probs=32.8
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHH----HHHHcCCcEEEEcCCCCcchhhc
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAF----PPVVEGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~ai----p~il~g~dvlv~apTGSGKTla~ 322 (560)
.+|.++|=-+.+...|++.= .-|.|..-+ ..+...+.++..+|.|+|||+++
T Consensus 89 v~f~DIggLe~v~~~L~e~V---ilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlA 144 (386)
T KOG0737|consen 89 VSFDDIGGLEEVKDALQELV---ILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLA 144 (386)
T ss_pred eehhhccchHHHHHHHHHHH---hhcccchhhhcccccccCCccceecCCCCchHHHHH
Confidence 57999998888888876531 111111111 11113368999999999999863
No 461
>PF05505 Ebola_NP: Ebola nucleoprotein; InterPro: IPR008609 This family consists of Ebola virus sp., Lake Victoria marburgvirus nucleoproteins. These proteins are responsible for encapsidation of genomic RNA. It has been found that nucleoprotein DNA vaccines can offer protection from the virus [].; GO: 0019074 viral RNA genome packaging, 0019013 viral nucleocapsid
Probab=76.25 E-value=1e+02 Score=34.24 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=21.3
Q ss_pred cCCCCCCCCCCCcccCCCCceEeecCC
Q 008605 62 SGGDGGGGGYSRTPLETAGACELIDND 88 (560)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (560)
+|+-|.-.+|+.-.|++||-..|.|-|
T Consensus 445 d~~~~~y~~ys~~~~~~~ddl~Lfdld 471 (717)
T PF05505_consen 445 DGESGNYQSYSSSGENAPDDLVLFDLD 471 (717)
T ss_pred cccccccCcccccccCCCCCeeeeccc
Confidence 456666778888999999999888753
No 462
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=76.10 E-value=4.9 Score=41.95 Aligned_cols=39 Identities=23% Similarity=0.402 Sum_probs=30.0
Q ss_pred CccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEec
Q 008605 420 NLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTA 460 (560)
Q Consensus 420 ~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSA 460 (560)
.++++|+||||.|- ..-...+++++.....+..|++.+-
T Consensus 131 ~fKlvILDEADaMT--~~AQnALRRviek~t~n~rF~ii~n 169 (360)
T KOG0990|consen 131 AFKLVILDEADAMT--RDAQNALRRVIEKYTANTRFATISN 169 (360)
T ss_pred ceeEEEecchhHhh--HHHHHHHHHHHHHhccceEEEEecc
Confidence 68899999999996 4566777888887777777775543
No 463
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=75.99 E-value=5.9 Score=44.24 Aligned_cols=20 Identities=30% Similarity=0.461 Sum_probs=17.1
Q ss_pred HHcCCcEEEEcCCCCcchhh
Q 008605 302 VVEGKSCILADQSGSGKTLA 321 (560)
Q Consensus 302 il~g~dvlv~apTGSGKTla 321 (560)
+..|+-+.+++|+|||||..
T Consensus 358 i~~G~~vaIvG~SGsGKSTL 377 (529)
T TIGR02868 358 LPPGERVAILGPSGSGKSTL 377 (529)
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 45688899999999999964
No 464
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=75.97 E-value=21 Score=42.57 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=15.4
Q ss_pred CcEEEEcCCCCcchhhcH
Q 008605 306 KSCILADQSGSGKTLAYL 323 (560)
Q Consensus 306 ~dvlv~apTGSGKTla~l 323 (560)
.++++.+|+|+|||....
T Consensus 195 ~n~lL~G~pGvGKT~l~~ 212 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVE 212 (852)
T ss_pred CceEEEcCCCCCHHHHHH
Confidence 589999999999997654
No 465
>PRK10865 protein disaggregation chaperone; Provisional
Probab=75.58 E-value=6.1 Score=47.07 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=15.3
Q ss_pred CcEEEEcCCCCcchhhcH
Q 008605 306 KSCILADQSGSGKTLAYL 323 (560)
Q Consensus 306 ~dvlv~apTGSGKTla~l 323 (560)
.++++.+|+|+|||....
T Consensus 200 ~n~lL~G~pGvGKT~l~~ 217 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVE 217 (857)
T ss_pred CceEEECCCCCCHHHHHH
Confidence 489999999999997643
No 466
>PRK05595 replicative DNA helicase; Provisional
Probab=75.41 E-value=18 Score=39.74 Aligned_cols=42 Identities=5% Similarity=0.155 Sum_probs=24.3
Q ss_pred CCccEEEEccccccCCCC---ChHHHHHHHHhhC---C--CCCcEEEEec
Q 008605 419 INLRCAILDEVDILFNDE---DFEVALQSLISSS---P--VTAQYLFVTA 460 (560)
Q Consensus 419 ~~l~~LViDEah~ll~d~---~f~~~l~~Il~~~---~--~~~Q~IllSA 460 (560)
..+++||||=.+.|.... .....+..|.+.+ . .++.++++|.
T Consensus 310 ~~~~~vvIDylql~~~~~~~~~r~~~v~~is~~LK~lAke~~i~vi~lsQ 359 (444)
T PRK05595 310 HGIDMILIDYLQLMSGGKGSESRQQEVSEISRSIKALAKEMECPVIALSQ 359 (444)
T ss_pred cCCCEEEEeHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhCCeEEEeec
Confidence 358899999999886321 1223344443322 1 3566777654
No 467
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=75.27 E-value=21 Score=36.92 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=18.7
Q ss_pred HHHHHHHHHhccccCCCccEEEEccccccC
Q 008605 404 PGRFMFLIKEGILQLINLRCAILDEVDILF 433 (560)
Q Consensus 404 P~~L~~ll~~~~~~l~~l~~LViDEah~ll 433 (560)
|+-|..++.. +..=++|.|||+|++.
T Consensus 91 ~gDlaaiLt~----Le~~DVLFIDEIHrl~ 116 (332)
T COG2255 91 PGDLAAILTN----LEEGDVLFIDEIHRLS 116 (332)
T ss_pred hhhHHHHHhc----CCcCCeEEEehhhhcC
Confidence 5566666553 4455679999999997
No 468
>PRK07773 replicative DNA helicase; Validated
Probab=75.01 E-value=11 Score=45.08 Aligned_cols=111 Identities=15% Similarity=0.074 Sum_probs=52.2
Q ss_pred CcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEE-eCCc
Q 008605 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV-TGGF 384 (560)
Q Consensus 306 ~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l-~gg~ 384 (560)
.=++|.|++|+|||...+--+.+..... +..++|++ .-.-..|+..++..... ++....+ .|..
T Consensus 218 ~livIagrPg~GKT~fal~ia~~~a~~~-----------~~~V~~fS-lEms~~ql~~R~~s~~~---~i~~~~i~~g~l 282 (886)
T PRK07773 218 QLIIVAARPSMGKTTFGLDFARNCAIRH-----------RLAVAIFS-LEMSKEQLVMRLLSAEA---KIKLSDMRSGRM 282 (886)
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHhc-----------CCeEEEEe-cCCCHHHHHHHHHHHhc---CCCHHHHhcCCC
Confidence 3477899999999975443333332221 22355554 33333445444433211 1111111 1212
Q ss_pred chHHHHHHh------cCCCcEEE-----ECHHHHHHHHHhccccCCCccEEEEccccccC
Q 008605 385 RQKTQLENL------QEGVDVLI-----ATPGRFMFLIKEGILQLINLRCAILDEVDILF 433 (560)
Q Consensus 385 ~~~~~~~~l------~~~~~IlV-----~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll 433 (560)
.. .++..+ .....+.| .|+..+...+++-.. -..+++||||=.+.|.
T Consensus 283 ~~-~~~~~~~~a~~~l~~~~i~i~d~~~~~i~~i~~~~r~~~~-~~~~~lvvIDyLql~~ 340 (886)
T PRK07773 283 SD-DDWTRLARAMGEISEAPIFIDDTPNLTVMEIRAKARRLRQ-EANLGLIVVDYLQLMT 340 (886)
T ss_pred CH-HHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchhhcC
Confidence 21 121111 12244555 255555543332111 1358999999999886
No 469
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=74.85 E-value=2.4 Score=48.41 Aligned_cols=49 Identities=27% Similarity=0.333 Sum_probs=36.7
Q ss_pred CcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhh
Q 008605 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (560)
Q Consensus 306 ~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l 368 (560)
.++++.||||||||..+.+|-+-.. +.-+|++=|--|+...+...-++.
T Consensus 212 ~H~lv~ApTgsGKgvg~VIPnLL~~--------------~gS~VV~DpKgE~~~~Ta~~R~~~ 260 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSVVVPTALKY--------------GGPLVCLDPSTEVAPMVCEHRRQA 260 (623)
T ss_pred ceEEEEeCCCCCccceeehhhhhcC--------------CCCEEEEEChHHHHHHHHHHHHHc
Confidence 5899999999999999999975322 123777778888877766555544
No 470
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=74.73 E-value=8.4 Score=45.90 Aligned_cols=17 Identities=35% Similarity=0.507 Sum_probs=14.9
Q ss_pred CcEEEEcCCCCcchhhc
Q 008605 306 KSCILADQSGSGKTLAY 322 (560)
Q Consensus 306 ~dvlv~apTGSGKTla~ 322 (560)
.|+++.+|.|+|||...
T Consensus 209 ~n~lLvG~pGvGKTal~ 225 (852)
T TIGR03345 209 NNPILTGEAGVGKTAVV 225 (852)
T ss_pred CceeEECCCCCCHHHHH
Confidence 48999999999999764
No 471
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=74.72 E-value=10 Score=39.89 Aligned_cols=43 Identities=16% Similarity=0.208 Sum_probs=26.6
Q ss_pred cCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHH
Q 008605 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELA 358 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa 358 (560)
.|+-+.|.+|+|||||...+-.+.... . .+..++|+-.-..+-
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~-~-----------~g~~v~yId~E~~~~ 96 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQ-K-----------AGGTAAFIDAEHALD 96 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-H-----------cCCcEEEEcccchhH
Confidence 345688999999999976543333322 1 244677775544443
No 472
>PHA00350 putative assembly protein
Probab=74.69 E-value=15 Score=39.73 Aligned_cols=17 Identities=18% Similarity=0.286 Sum_probs=13.9
Q ss_pred EEEEcCCCCcchhhcHH
Q 008605 308 CILADQSGSGKTLAYLL 324 (560)
Q Consensus 308 vlv~apTGSGKTla~ll 324 (560)
.++.+..|||||+..+-
T Consensus 4 ~l~tG~pGSGKT~~aV~ 20 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVV 20 (399)
T ss_pred EEEecCCCCchhHHHHH
Confidence 46889999999987654
No 473
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=74.52 E-value=2.6 Score=45.75 Aligned_cols=32 Identities=25% Similarity=0.518 Sum_probs=22.3
Q ss_pred HHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHH
Q 008605 299 FPPVVEGKSCILADQSGSGKTLAYLLPVIQRLR 331 (560)
Q Consensus 299 ip~il~g~dvlv~apTGSGKTla~llpil~~l~ 331 (560)
+|.-...+++++.++||||||.. +..++..+.
T Consensus 36 ~~~~~~~~h~~i~g~tGsGKt~~-i~~l~~~~~ 67 (410)
T cd01127 36 FPKDAEEAHTMIIGTTGTGKTTQ-IRELLASIR 67 (410)
T ss_pred CCcchhhccEEEEcCCCCCHHHH-HHHHHHHHH
Confidence 34444568999999999999975 434444443
No 474
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=74.52 E-value=9.6 Score=42.43 Aligned_cols=73 Identities=19% Similarity=0.194 Sum_probs=56.3
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhc----CCCcEEEECHHHHHHHHHhccccC
Q 008605 343 SGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ----EGVDVLIATPGRFMFLIKEGILQL 418 (560)
Q Consensus 343 ~~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~----~~~~IlV~TP~~L~~ll~~~~~~l 418 (560)
....++||.|-|+.-|.++...++.. ++.+.+++|+.+..+....|. ..+.|||||-= -.+.+++
T Consensus 339 ~~~~KvIIFc~tkr~~~~l~~~l~~~-----~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdV------AaRGLDi 407 (519)
T KOG0331|consen 339 DSEGKVIIFCETKRTCDELARNLRRK-----GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDV------AARGLDV 407 (519)
T ss_pred cCCCcEEEEecchhhHHHHHHHHHhc-----CcceeeecccccHHHHHHHHHhcccCCcceEEEccc------ccccCCC
Confidence 46779999999999999999888764 368899999998876655553 34899999932 2346778
Q ss_pred CCccEEEE
Q 008605 419 INLRCAIL 426 (560)
Q Consensus 419 ~~l~~LVi 426 (560)
.+|++||-
T Consensus 408 ~dV~lVIn 415 (519)
T KOG0331|consen 408 PDVDLVIN 415 (519)
T ss_pred ccccEEEe
Confidence 88888874
No 475
>PHA02542 41 41 helicase; Provisional
Probab=74.45 E-value=12 Score=41.59 Aligned_cols=59 Identities=17% Similarity=0.146 Sum_probs=31.7
Q ss_pred CHHHHHHHHHhccccC-CCccEEEEccccccCCC------CChHHHHHHHHhhCC-----CCCcEEEEecc
Q 008605 403 TPGRFMFLIKEGILQL-INLRCAILDEVDILFND------EDFEVALQSLISSSP-----VTAQYLFVTAT 461 (560)
Q Consensus 403 TP~~L~~ll~~~~~~l-~~l~~LViDEah~ll~d------~~f~~~l~~Il~~~~-----~~~Q~IllSAT 461 (560)
|+..+...+++-...- ..+++||||=.+.|... .+....+..|.+.+. .++.++++|-.
T Consensus 283 t~~~ir~~~rrlk~~~g~~~dlVvIDYLqL~~~~~~~~~~~nr~~ei~~Isr~LK~lAkel~vpVi~lsQL 353 (473)
T PHA02542 283 HAGHFRALLNELKLKKNFKPDVIIVDYLGICASSRLRVSSENSYTYVKAIAEELRGLAVEHDVVVWTAAQT 353 (473)
T ss_pred CHHHHHHHHHHHHHhcCCCCCEEEEechhhccCCcccCCCCChHHHHHHHHHHHHHHHHHhCCeEEEEEee
Confidence 4556655554422111 13789999999988521 123333444433322 26777777654
No 476
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.34 E-value=4.6 Score=46.31 Aligned_cols=41 Identities=29% Similarity=0.294 Sum_probs=30.4
Q ss_pred CCCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEec
Q 008605 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTA 460 (560)
Q Consensus 418 l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSA 460 (560)
+++-+.||+|||---+ |..-+..++..+..+..+ +++++=|
T Consensus 620 lr~P~VLILDEATSAL-DaeSE~lVq~aL~~~~~~-rTVlvIA 660 (716)
T KOG0058|consen 620 LRNPRVLILDEATSAL-DAESEYLVQEALDRLMQG-RTVLVIA 660 (716)
T ss_pred hcCCCEEEEechhhhc-chhhHHHHHHHHHHhhcC-CeEEEEe
Confidence 5567889999999988 777777788877766555 5555544
No 477
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=74.04 E-value=19 Score=39.07 Aligned_cols=71 Identities=18% Similarity=0.220 Sum_probs=53.3
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHh---c-CCCcEEEECHHHHHHHHHhccccCCC
Q 008605 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLIN 420 (560)
Q Consensus 345 ~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l---~-~~~~IlV~TP~~L~~ll~~~~~~l~~ 420 (560)
..++||.|++++-+..++..++.. ++.+..++|+....++...+ . ...+|||||- .+. ..+++.+
T Consensus 245 ~~~~lVF~~s~~~~~~l~~~L~~~-----~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd-----~~~-~GiDip~ 313 (434)
T PRK11192 245 VTRSIVFVRTRERVHELAGWLRKA-----GINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATD-----VAA-RGIDIDD 313 (434)
T ss_pred CCeEEEEeCChHHHHHHHHHHHhC-----CCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEcc-----ccc-cCccCCC
Confidence 468999999999999999888753 57888899988766554433 2 3489999992 333 3567888
Q ss_pred ccEEEE
Q 008605 421 LRCAIL 426 (560)
Q Consensus 421 l~~LVi 426 (560)
+.++|.
T Consensus 314 v~~VI~ 319 (434)
T PRK11192 314 VSHVIN 319 (434)
T ss_pred CCEEEE
Confidence 988874
No 478
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=74.00 E-value=20 Score=38.75 Aligned_cols=73 Identities=22% Similarity=0.273 Sum_probs=53.6
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHh---c-CCCcEEEECHHHHHHHHHhccccCCC
Q 008605 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLIN 420 (560)
Q Consensus 345 ~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l---~-~~~~IlV~TP~~L~~ll~~~~~~l~~ 420 (560)
..++||.|+++.-|..+++.+... ++.+..++|+....++...+ . ..++|||||- .+. ..+++.+
T Consensus 255 ~~~~lVF~~t~~~~~~l~~~L~~~-----g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd-----v~~-rGiDip~ 323 (423)
T PRK04837 255 PDRAIIFANTKHRCEEIWGHLAAD-----GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATD-----VAA-RGLHIPA 323 (423)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhC-----CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEec-----hhh-cCCCccc
Confidence 457999999999999988888653 56888899987765554333 2 4589999993 333 4567888
Q ss_pred ccEEEEcc
Q 008605 421 LRCAILDE 428 (560)
Q Consensus 421 l~~LViDE 428 (560)
++++|.-+
T Consensus 324 v~~VI~~d 331 (423)
T PRK04837 324 VTHVFNYD 331 (423)
T ss_pred cCEEEEeC
Confidence 98877543
No 479
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=73.90 E-value=2.1 Score=43.82 Aligned_cols=20 Identities=35% Similarity=0.626 Sum_probs=17.4
Q ss_pred HHcCCcEEEEcCCCCcchhh
Q 008605 302 VVEGKSCILADQSGSGKTLA 321 (560)
Q Consensus 302 il~g~dvlv~apTGSGKTla 321 (560)
+..++.+++++|+|+|||..
T Consensus 30 ~~~~~pvLl~G~~GtGKT~l 49 (272)
T PF12775_consen 30 LSNGRPVLLVGPSGTGKTSL 49 (272)
T ss_dssp HHCTEEEEEESSTTSSHHHH
T ss_pred HHcCCcEEEECCCCCchhHH
Confidence 45778999999999999975
No 480
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=73.88 E-value=3.2 Score=44.72 Aligned_cols=48 Identities=23% Similarity=0.484 Sum_probs=30.5
Q ss_pred HcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHH
Q 008605 303 VEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVL 362 (560)
Q Consensus 303 l~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~ 362 (560)
...+++++.+.||||||. ++-.++..+... +-++||.=|.-+.....+
T Consensus 13 ~e~~~~li~G~~GsGKT~-~i~~ll~~~~~~-----------g~~~iI~D~kg~~~~~f~ 60 (386)
T PF10412_consen 13 SENRHILIIGATGSGKTQ-AIRHLLDQIRAR-----------GDRAIIYDPKGEFTERFY 60 (386)
T ss_dssp GGGG-EEEEE-TTSSHHH-HHHHHHHHHHHT-----------T-EEEEEEETTHHHHHH-
T ss_pred hhhCcEEEECCCCCCHHH-HHHHHHHHHHHc-----------CCEEEEEECCchHHHHhc
Confidence 456899999999999997 456677766543 335666666666644433
No 481
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=73.71 E-value=5.8 Score=41.74 Aligned_cols=42 Identities=19% Similarity=0.197 Sum_probs=27.2
Q ss_pred CCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHH
Q 008605 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELA 358 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa 358 (560)
|+-+.+.+|+|+|||...+-.+.... . .+..++||..-..+-
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~-~-----------~g~~~vyId~E~~~~ 96 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQ-K-----------LGGTVAFIDAEHALD 96 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-H-----------cCCCEEEECccccHH
Confidence 45688999999999965443333322 1 245688887655544
No 482
>PRK10263 DNA translocase FtsK; Provisional
Probab=73.12 E-value=12 Score=45.84 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=18.7
Q ss_pred cEEEEcCCCCcchhhcHHHHHHHHH
Q 008605 307 SCILADQSGSGKTLAYLLPVIQRLR 331 (560)
Q Consensus 307 dvlv~apTGSGKTla~llpil~~l~ 331 (560)
++||.+.||||||.+...-|+..+.
T Consensus 1012 HLLIAGaTGSGKSv~LntLIlSLl~ 1036 (1355)
T PRK10263 1012 HLLVAGTTGSGKSVGVNAMILSMLY 1036 (1355)
T ss_pred cEEEecCCCCCHHHHHHHHHHHHHH
Confidence 7899999999999875544444443
No 483
>PRK09354 recA recombinase A; Provisional
Probab=72.93 E-value=7.4 Score=41.33 Aligned_cols=43 Identities=16% Similarity=0.226 Sum_probs=28.6
Q ss_pred CCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHH
Q 008605 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELAS 359 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~ 359 (560)
|+-+.|.+|+|||||...+-.+..... .+..++||-.-..+-.
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~------------~G~~~~yId~E~s~~~ 102 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQK------------AGGTAAFIDAEHALDP 102 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH------------cCCcEEEECCccchHH
Confidence 456789999999999865544443322 2456888876655543
No 484
>PRK12608 transcription termination factor Rho; Provisional
Probab=72.32 E-value=22 Score=38.21 Aligned_cols=29 Identities=17% Similarity=0.322 Sum_probs=23.0
Q ss_pred HHHHHHHHHHH---cCCcEEEEcCCCCcchhh
Q 008605 293 QIQAMAFPPVV---EGKSCILADQSGSGKTLA 321 (560)
Q Consensus 293 ~iQ~~aip~il---~g~dvlv~apTGSGKTla 321 (560)
.+-.++|..+. .|+..+|.|+.|+|||..
T Consensus 118 ~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTL 149 (380)
T PRK12608 118 DLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVL 149 (380)
T ss_pred chhHhhhhheeecCCCceEEEECCCCCCHHHH
Confidence 44455777655 788999999999999975
No 485
>PRK09087 hypothetical protein; Validated
Probab=71.89 E-value=13 Score=36.97 Aligned_cols=17 Identities=41% Similarity=0.495 Sum_probs=14.0
Q ss_pred CCcEEEEcCCCCcchhh
Q 008605 305 GKSCILADQSGSGKTLA 321 (560)
Q Consensus 305 g~dvlv~apTGSGKTla 321 (560)
+..+++.+|+|+|||-.
T Consensus 44 ~~~l~l~G~~GsGKThL 60 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHL 60 (226)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 34489999999999964
No 486
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=71.79 E-value=4.1 Score=41.53 Aligned_cols=37 Identities=22% Similarity=0.419 Sum_probs=27.0
Q ss_pred cccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCc-EEEEcCCCCcchhhc
Q 008605 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKS-CILADQSGSGKTLAY 322 (560)
Q Consensus 267 ~~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~d-vlv~apTGSGKTla~ 322 (560)
+.+|++|+||+-+.+- ++..+. +|++++|||||+...
T Consensus 107 IPt~eeL~LPevlk~l-------------------a~~kRGLviiVGaTGSGKSTtm 144 (375)
T COG5008 107 IPTFEELKLPEVLKDL-------------------ALAKRGLVIIVGATGSGKSTTM 144 (375)
T ss_pred CCcHHhcCCcHHHHHh-------------------hcccCceEEEECCCCCCchhhH
Confidence 4689999999876543 223333 778999999999763
No 487
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=71.29 E-value=29 Score=40.01 Aligned_cols=42 Identities=17% Similarity=0.244 Sum_probs=27.3
Q ss_pred CCccEEEEccccccCCCCChHHHHHHHHhhCC---CCCcEEEEeccC
Q 008605 419 INLRCAILDEVDILFNDEDFEVALQSLISSSP---VTAQYLFVTATL 462 (560)
Q Consensus 419 ~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~---~~~Q~IllSATl 462 (560)
....+|+|||.|.|. ..-...|..|+.... .+.-+|..+-|+
T Consensus 507 ~~~~VvLiDElD~Lv--tr~QdVlYn~fdWpt~~~sKLvvi~IaNTm 551 (767)
T KOG1514|consen 507 RSTTVVLIDELDILV--TRSQDVLYNIFDWPTLKNSKLVVIAIANTM 551 (767)
T ss_pred CCCEEEEeccHHHHh--cccHHHHHHHhcCCcCCCCceEEEEecccc
Confidence 345678999999998 234455666665542 244566777787
No 488
>CHL00095 clpC Clp protease ATP binding subunit
Probab=71.21 E-value=6.1 Score=46.91 Aligned_cols=98 Identities=16% Similarity=0.243 Sum_probs=0.0
Q ss_pred EEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchH
Q 008605 308 CILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387 (560)
Q Consensus 308 vlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~ 387 (560)
+++++|||+||| +||..+.+.+-.-......+....+.....
T Consensus 542 ~lf~Gp~GvGKt------------------------------------~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~-- 583 (821)
T CHL00095 542 FLFSGPTGVGKT------------------------------------ELTKALASYFFGSEDAMIRLDMSEYMEKHT-- 583 (821)
T ss_pred EEEECCCCCcHH------------------------------------HHHHHHHHHhcCCccceEEEEchhcccccc--
Q ss_pred HHHHHhcCCCcEEEECH---------HHHHHHHHhccccCCCccEEEEccccccCCCCChHHHHHHHHhhC---------
Q 008605 388 TQLENLQEGVDVLIATP---------GRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS--------- 449 (560)
Q Consensus 388 ~~~~~l~~~~~IlV~TP---------~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~--------- 449 (560)
..-++++| +.|...++.... ++|+|||+|.+- ......+..++..-
T Consensus 584 ---------~~~l~g~~~gyvg~~~~~~l~~~~~~~p~-----~VvllDeieka~--~~v~~~Llq~le~g~~~d~~g~~ 647 (821)
T CHL00095 584 ---------VSKLIGSPPGYVGYNEGGQLTEAVRKKPY-----TVVLFDEIEKAH--PDIFNLLLQILDDGRLTDSKGRT 647 (821)
T ss_pred ---------HHHhcCCCCcccCcCccchHHHHHHhCCC-----eEEEECChhhCC--HHHHHHHHHHhccCceecCCCcE
Q ss_pred --CCCCcEEEEe
Q 008605 450 --PVTAQYLFVT 459 (560)
Q Consensus 450 --~~~~Q~IllS 459 (560)
-.++-+|+.|
T Consensus 648 v~~~~~i~I~Ts 659 (821)
T CHL00095 648 IDFKNTLIIMTS 659 (821)
T ss_pred EecCceEEEEeC
No 489
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=70.86 E-value=7.9 Score=44.53 Aligned_cols=71 Identities=14% Similarity=0.089 Sum_probs=52.1
Q ss_pred CChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhh
Q 008605 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (560)
Q Consensus 290 ~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~ 369 (560)
.+++-|.+|+... ...++|.|..|||||-+..--+.+.+.... .....++.|+=|+..|.++..++.++.
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria~li~~~~--------v~p~~Il~vTFTnkAA~em~~Rl~~~~ 71 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIAYLIAAGG--------VDPEQILAITFTNKAAAEMRERLLKLL 71 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHHHHHHHcCC--------cChHHeeeeechHHHHHHHHHHHHHHh
Confidence 5788899987655 567999999999999886555555554321 112248888888888999888888876
Q ss_pred c
Q 008605 370 K 370 (560)
Q Consensus 370 ~ 370 (560)
.
T Consensus 72 ~ 72 (655)
T COG0210 72 G 72 (655)
T ss_pred C
Confidence 4
No 490
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=70.73 E-value=7.9 Score=44.49 Aligned_cols=53 Identities=19% Similarity=0.342 Sum_probs=35.8
Q ss_pred CCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHH--HHHHHHHHHHhhh
Q 008605 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAE--LASQVLSNCRSLS 369 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~Ptre--La~Qi~~~l~~l~ 369 (560)
..+++|.++||+|||..+.+-+.+.+.. +..+|++=|-.. |...+...++..+
T Consensus 176 ~~H~lv~G~TGsGKT~l~~~l~~q~i~~------------g~~viv~DpKgD~~l~~~~~~~~~~~G 230 (634)
T TIGR03743 176 VGHTLVLGTTGVGKTRLAELLITQDIRR------------GDVVIVIDPKGDADLKRRMRAEAKRAG 230 (634)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHc------------CCeEEEEeCCCchHHHHHHHHHHHHhC
Confidence 4689999999999998765544444432 334666666543 7777777776654
No 491
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=70.70 E-value=30 Score=39.80 Aligned_cols=80 Identities=15% Similarity=0.273 Sum_probs=55.0
Q ss_pred CCCEEEEEcCCHH--------HHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHh---c-CCCcEEEECHHHHHHHH
Q 008605 344 GSPRVVILAPTAE--------LASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLI 411 (560)
Q Consensus 344 ~~~~aLil~Ptre--------La~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l---~-~~~~IlV~TP~~L~~ll 411 (560)
.+.+++++||+.+ -+.++++.+.+.. .++.+..++|+....+....+ . ...+|||+|. .+
T Consensus 447 ~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~---~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~-----vi 518 (630)
T TIGR00643 447 KGRQAYVVYPLIEESEKLDLKAAEALYERLKKAF---PKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATT-----VI 518 (630)
T ss_pred hCCcEEEEEccccccccchHHHHHHHHHHHHhhC---CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECc-----ee
Confidence 3567999999863 3445555555432 467899999998765543333 2 3589999994 22
Q ss_pred HhccccCCCccEEEEcccccc
Q 008605 412 KEGILQLINLRCAILDEVDIL 432 (560)
Q Consensus 412 ~~~~~~l~~l~~LViDEah~l 432 (560)
...+++.+++++|+..++..
T Consensus 519 -e~GvDiP~v~~VIi~~~~r~ 538 (630)
T TIGR00643 519 -EVGVDVPNATVMVIEDAERF 538 (630)
T ss_pred -ecCcccCCCcEEEEeCCCcC
Confidence 34678889999999888764
No 492
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=70.66 E-value=3.5 Score=40.46 Aligned_cols=20 Identities=30% Similarity=0.516 Sum_probs=14.2
Q ss_pred HcCCcEEEEcCCCCcchhhc
Q 008605 303 VEGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 303 l~g~dvlv~apTGSGKTla~ 322 (560)
..++++++.+|.|+|||+..
T Consensus 20 aG~h~lLl~GppGtGKTmlA 39 (206)
T PF01078_consen 20 AGGHHLLLIGPPGTGKTMLA 39 (206)
T ss_dssp HCC--EEEES-CCCTHHHHH
T ss_pred cCCCCeEEECCCCCCHHHHH
Confidence 35678999999999999753
No 493
>KOG1806 consensus DEAD box containing helicases [Replication, recombination and repair]
Probab=70.44 E-value=7.7 Score=46.03 Aligned_cols=72 Identities=18% Similarity=0.238 Sum_probs=53.4
Q ss_pred CCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Q 008605 287 NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (560)
Q Consensus 287 g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~ 366 (560)
++-..|+-|.++|-.-..-..+++.+|+|+|||-... -++..+. .+...++++|++.+..-.+|.++.+.
T Consensus 735 n~v~ft~~qveai~sg~qpgltmvvgppgtgktd~av-qil~~ly---------hn~p~qrTlivthsnqaln~lfeKi~ 804 (1320)
T KOG1806|consen 735 NQVKFTPTQVEAILSGMQPGLTMVVGPPGTGKTDVAV-QILSVLY---------HNSPNQRTLIVTHSNQALNQLFEKIM 804 (1320)
T ss_pred chhccCHHHHHHHHhcCCCCceeeecCCCCCCcchhh-hhhhhhh---------hcCCCcceEEEEecccchhHHHHHHH
Confidence 4556788999998776666789999999999997642 2332222 22457899999999988888877765
Q ss_pred hh
Q 008605 367 SL 368 (560)
Q Consensus 367 ~l 368 (560)
++
T Consensus 805 ~~ 806 (1320)
T KOG1806|consen 805 AL 806 (1320)
T ss_pred hc
Confidence 54
No 494
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=70.42 E-value=28 Score=37.40 Aligned_cols=47 Identities=21% Similarity=0.087 Sum_probs=34.7
Q ss_pred CCccEEEEccccccCCCCC--hHHHHHHHHhhCCCCCcEEEEeccCCHHH
Q 008605 419 INLRCAILDEVDILFNDED--FEVALQSLISSSPVTAQYLFVTATLPVEI 466 (560)
Q Consensus 419 ~~l~~LViDEah~ll~d~~--f~~~l~~Il~~~~~~~Q~IllSATlp~~v 466 (560)
...-+||+|-||.+- |++ .-+.+-++.+.++...-.|++|+++++..
T Consensus 114 d~~~~liLDnad~lr-D~~a~ll~~l~~L~el~~~~~i~iils~~~~e~~ 162 (438)
T KOG2543|consen 114 DQKVFLILDNADALR-DMDAILLQCLFRLYELLNEPTIVIILSAPSCEKQ 162 (438)
T ss_pred CceEEEEEcCHHhhh-ccchHHHHHHHHHHHHhCCCceEEEEeccccHHH
Confidence 345589999999988 554 44555666666777777889999998764
No 495
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=70.39 E-value=5.1 Score=40.35 Aligned_cols=53 Identities=26% Similarity=0.436 Sum_probs=34.6
Q ss_pred cCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhh
Q 008605 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~ 369 (560)
.|+.++|.+++|||||...+=.+...+.. +-.++|++ +.+...++.+.+..++
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~------------ge~vlyvs-~~e~~~~l~~~~~~~g 74 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGARE------------GEPVLYVS-TEESPEELLENARSFG 74 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhc------------CCcEEEEE-ecCCHHHHHHHHHHcC
Confidence 46789999999999997644333333321 33466654 5566777777776653
No 496
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=69.89 E-value=69 Score=33.83 Aligned_cols=71 Identities=15% Similarity=-0.023 Sum_probs=36.7
Q ss_pred CcE--EEECHHHHHHHHHhccccCCCccEEEEccccccCCCCChH---HHHHHHHhhCCC-----CCcEEEEeccCCHHH
Q 008605 397 VDV--LIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFE---VALQSLISSSPV-----TAQYLFVTATLPVEI 466 (560)
Q Consensus 397 ~~I--lV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~---~~l~~Il~~~~~-----~~Q~IllSATlp~~v 466 (560)
+|+ +|..|+.-.++.....-.+...+++||--+|.+. ..... ..++..+....+ ...++.+||+-...+
T Consensus 170 aD~vlvv~~p~~gd~iq~~k~gi~E~aDIiVVNKaDl~~-~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GI 248 (332)
T PRK09435 170 VDFFLLLQLPGAGDELQGIKKGIMELADLIVINKADGDN-KTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGI 248 (332)
T ss_pred CCEEEEEecCCchHHHHHHHhhhhhhhheEEeehhcccc-hhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCH
Confidence 554 4554544433322211123334579999999775 33333 333444443321 257999999876444
Q ss_pred HH
Q 008605 467 YN 468 (560)
Q Consensus 467 ~~ 468 (560)
.+
T Consensus 249 de 250 (332)
T PRK09435 249 DE 250 (332)
T ss_pred HH
Confidence 33
No 497
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=69.80 E-value=15 Score=35.88 Aligned_cols=22 Identities=32% Similarity=0.332 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCCcchhhcHHHH
Q 008605 305 GKSCILADQSGSGKTLAYLLPV 326 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~llpi 326 (560)
|.=+.+.+++|+|||...+.-+
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia 40 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLA 40 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHH
Confidence 4557899999999997654433
No 498
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=69.33 E-value=32 Score=37.79 Aligned_cols=71 Identities=20% Similarity=0.226 Sum_probs=52.5
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHh---c-CCCcEEEECHHHHHHHHHhccccCCC
Q 008605 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLIN 420 (560)
Q Consensus 345 ~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l---~-~~~~IlV~TP~~L~~ll~~~~~~l~~ 420 (560)
..++||.|+++.-+..+++.+.+. ++.+..++|+....+....+ . ...+|||||- .+. ..+++.+
T Consensus 245 ~~~~lVF~~t~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTd-----v~~-rGiDip~ 313 (456)
T PRK10590 245 WQQVLVFTRTKHGANHLAEQLNKD-----GIRSAAIHGNKSQGARTRALADFKSGDIRVLVATD-----IAA-RGLDIEE 313 (456)
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHC-----CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcc-----HHh-cCCCccc
Confidence 457999999999999998888653 46788899988765554333 3 3578999993 333 3577888
Q ss_pred ccEEEE
Q 008605 421 LRCAIL 426 (560)
Q Consensus 421 l~~LVi 426 (560)
++++|.
T Consensus 314 v~~VI~ 319 (456)
T PRK10590 314 LPHVVN 319 (456)
T ss_pred CCEEEE
Confidence 888874
No 499
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=69.22 E-value=14 Score=44.03 Aligned_cols=15 Identities=40% Similarity=0.483 Sum_probs=13.4
Q ss_pred EEEEcCCCCcchhhc
Q 008605 308 CILADQSGSGKTLAY 322 (560)
Q Consensus 308 vlv~apTGSGKTla~ 322 (560)
+++++|||+|||...
T Consensus 599 ~lf~Gp~GvGKT~lA 613 (852)
T TIGR03345 599 FLLVGPSGVGKTETA 613 (852)
T ss_pred EEEECCCCCCHHHHH
Confidence 789999999999764
No 500
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=69.22 E-value=34 Score=31.52 Aligned_cols=16 Identities=19% Similarity=0.181 Sum_probs=12.7
Q ss_pred EEEEcCCCCcchhhcH
Q 008605 308 CILADQSGSGKTLAYL 323 (560)
Q Consensus 308 vlv~apTGSGKTla~l 323 (560)
+.+.++.|+|||....
T Consensus 2 i~~~G~~GsGKTt~~~ 17 (148)
T cd03114 2 IGITGVPGAGKSTLID 17 (148)
T ss_pred EEEECCCCCcHHHHHH
Confidence 5678999999997543
Done!