Query 008605
Match_columns 560
No_of_seqs 333 out of 2392
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 07:27:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008605.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008605hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 4.1E-40 1.4E-44 354.5 33.9 267 267-552 55-323 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 1.5E-37 5.1E-42 329.6 32.8 271 268-552 15-299 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 2.2E-37 7.6E-42 328.2 28.9 265 267-553 36-300 (410)
4 3fe2_A Probable ATP-dependent 100.0 1.3E-36 4.4E-41 301.5 22.7 210 268-483 29-238 (242)
5 3eiq_A Eukaryotic initiation f 100.0 9.1E-36 3.1E-40 315.2 29.1 263 268-552 40-303 (414)
6 3fht_A ATP-dependent RNA helic 100.0 7.7E-36 2.6E-40 315.2 28.1 268 263-553 20-290 (412)
7 1s2m_A Putative ATP-dependent 100.0 2.3E-35 7.9E-40 311.3 30.8 263 267-553 20-282 (400)
8 1xti_A Probable ATP-dependent 100.0 2.2E-35 7.5E-40 309.9 29.1 264 268-552 8-273 (391)
9 3fmp_B ATP-dependent RNA helic 100.0 2.7E-36 9.2E-41 327.7 19.7 266 264-552 88-356 (479)
10 1vec_A ATP-dependent RNA helic 100.0 3.4E-35 1.2E-39 282.8 24.6 203 268-480 3-205 (206)
11 3fmo_B ATP-dependent RNA helic 100.0 6.5E-36 2.2E-40 306.9 20.8 206 264-481 88-296 (300)
12 3pey_A ATP-dependent RNA helic 100.0 8.2E-35 2.8E-39 304.9 28.3 261 268-553 5-267 (395)
13 3iuy_A Probable ATP-dependent 100.0 1.8E-35 6.1E-40 290.0 21.7 208 268-481 19-227 (228)
14 1wrb_A DJVLGB; RNA helicase, D 100.0 1E-35 3.5E-40 296.5 19.8 227 267-495 22-252 (253)
15 1fuu_A Yeast initiation factor 100.0 1.6E-35 5.3E-40 311.0 20.0 262 268-552 21-282 (394)
16 2oxc_A Probable ATP-dependent 100.0 1.1E-34 3.9E-39 285.3 22.5 204 267-481 23-227 (230)
17 1hv8_A Putative ATP-dependent 100.0 1.2E-33 4E-38 293.2 30.4 256 268-553 6-262 (367)
18 3ber_A Probable ATP-dependent 100.0 2.8E-34 9.7E-39 286.7 24.6 204 267-481 42-246 (249)
19 1q0u_A Bstdead; DEAD protein, 100.0 5.1E-35 1.7E-39 285.3 18.3 206 267-482 3-211 (219)
20 3bor_A Human initiation factor 100.0 1.5E-34 5.3E-39 285.9 19.5 204 267-481 29-233 (237)
21 2gxq_A Heat resistant RNA depe 100.0 5.3E-34 1.8E-38 274.3 21.8 203 269-481 2-204 (207)
22 2pl3_A Probable ATP-dependent 100.0 1.6E-33 5.6E-38 277.5 25.2 208 267-482 24-232 (236)
23 3ly5_A ATP-dependent RNA helic 100.0 5.2E-34 1.8E-38 286.9 21.8 206 267-479 51-259 (262)
24 1qde_A EIF4A, translation init 100.0 8.4E-34 2.9E-38 276.9 21.1 204 268-483 14-217 (224)
25 1t6n_A Probable ATP-dependent 100.0 8.3E-34 2.8E-38 276.4 20.3 204 268-480 14-218 (220)
26 3sqw_A ATP-dependent RNA helic 100.0 2.8E-33 9.7E-38 311.6 25.9 271 269-552 18-311 (579)
27 3i5x_A ATP-dependent RNA helic 100.0 4.2E-33 1.4E-37 308.3 25.4 265 275-552 79-362 (563)
28 2z0m_A 337AA long hypothetical 100.0 5.7E-32 1.9E-36 277.6 28.5 242 275-551 1-242 (337)
29 3dkp_A Probable ATP-dependent 100.0 4E-33 1.4E-37 276.2 19.0 207 268-483 25-241 (245)
30 3fho_A ATP-dependent RNA helic 100.0 1.6E-31 5.5E-36 293.2 17.3 259 269-552 120-380 (508)
31 3oiy_A Reverse gyrase helicase 100.0 2.3E-31 8E-36 283.2 15.8 240 278-553 9-276 (414)
32 2v1x_A ATP-dependent DNA helic 100.0 1.2E-29 4.1E-34 283.0 25.6 250 269-553 22-291 (591)
33 1oyw_A RECQ helicase, ATP-depe 100.0 3.1E-29 1.1E-33 276.1 23.6 247 268-553 2-260 (523)
34 3l9o_A ATP-dependent RNA helic 100.0 7.6E-30 2.6E-34 302.0 19.0 258 268-552 162-464 (1108)
35 2zj8_A DNA helicase, putative 100.0 2.9E-29 9.8E-34 286.3 22.3 258 269-552 2-260 (720)
36 2va8_A SSO2462, SKI2-type heli 100.0 1.1E-28 3.8E-33 281.1 25.2 258 268-552 8-275 (715)
37 4ddu_A Reverse gyrase; topoiso 100.0 8.6E-29 2.9E-33 293.0 20.9 233 285-553 74-333 (1104)
38 2p6r_A Afuhel308 helicase; pro 100.0 7.1E-29 2.4E-33 282.2 18.6 257 269-552 2-265 (702)
39 2ykg_A Probable ATP-dependent 99.9 1.4E-26 4.7E-31 262.3 27.2 176 280-463 3-184 (696)
40 3tbk_A RIG-I helicase domain; 99.9 2.7E-26 9.1E-31 251.2 27.2 167 290-464 4-176 (555)
41 4a2p_A RIG-I, retinoic acid in 99.9 1.9E-26 6.7E-31 252.8 25.5 168 287-463 4-177 (556)
42 1gku_B Reverse gyrase, TOP-RG; 99.9 8.2E-28 2.8E-32 284.2 12.4 232 281-552 48-298 (1054)
43 2xgj_A ATP-dependent RNA helic 99.9 2.3E-26 8E-31 270.1 24.3 240 285-552 82-366 (1010)
44 4f92_B U5 small nuclear ribonu 99.9 8.5E-26 2.9E-30 276.5 27.2 254 275-552 911-1178(1724)
45 4a2q_A RIG-I, retinoic acid in 99.9 1E-25 3.4E-30 259.8 25.5 171 285-463 243-418 (797)
46 4a4z_A Antiviral helicase SKI2 99.9 9.2E-26 3.1E-30 264.9 23.8 156 286-465 36-191 (997)
47 4f92_B U5 small nuclear ribonu 99.9 3E-26 1E-30 280.5 20.1 250 287-552 76-340 (1724)
48 1tf5_A Preprotein translocase 99.9 6E-26 2E-30 256.7 19.0 162 285-464 79-288 (844)
49 2fsf_A Preprotein translocase 99.9 3.7E-25 1.3E-29 249.7 17.2 148 286-451 71-240 (853)
50 4a2w_A RIG-I, retinoic acid in 99.9 2E-24 6.9E-29 252.8 23.7 171 285-463 243-418 (936)
51 1wp9_A ATP-dependent RNA helic 99.9 2.7E-23 9.2E-28 221.6 27.5 159 290-463 9-167 (494)
52 1nkt_A Preprotein translocase 99.9 5.1E-24 1.7E-28 240.9 21.0 162 285-464 107-316 (922)
53 4gl2_A Interferon-induced heli 99.9 5.3E-24 1.8E-28 241.2 14.8 167 290-464 7-193 (699)
54 3b6e_A Interferon-induced heli 99.9 1.1E-23 3.9E-28 202.7 12.2 168 286-461 29-216 (216)
55 2eyq_A TRCF, transcription-rep 99.9 1.4E-21 4.7E-26 232.6 27.1 238 273-552 586-835 (1151)
56 1gm5_A RECG; helicase, replica 99.9 1.8E-22 6.1E-27 230.9 18.6 167 277-468 356-532 (780)
57 2jlq_A Serine protease subunit 99.9 1E-22 3.5E-27 220.2 11.0 209 287-552 1-211 (451)
58 2xau_A PRE-mRNA-splicing facto 99.9 1.7E-21 5.7E-26 223.5 21.3 252 267-551 71-325 (773)
59 2whx_A Serine protease/ntpase/ 99.9 2.3E-23 7.7E-28 233.4 5.7 226 270-553 151-379 (618)
60 3llm_A ATP-dependent RNA helic 99.9 5.1E-22 1.8E-26 195.9 14.7 183 276-478 47-231 (235)
61 2oca_A DAR protein, ATP-depend 99.9 6.4E-22 2.2E-26 216.1 15.6 241 288-553 111-371 (510)
62 3o8b_A HCV NS3 protease/helica 99.9 3.4E-22 1.2E-26 223.6 9.9 199 292-552 219-419 (666)
63 2fwr_A DNA repair protein RAD2 99.9 3.4E-21 1.2E-25 208.3 14.9 136 290-463 93-229 (472)
64 2wv9_A Flavivirin protease NS2 99.8 9.3E-22 3.2E-26 222.1 2.9 213 284-552 204-433 (673)
65 1rif_A DAR protein, DNA helica 99.8 3.2E-20 1.1E-24 187.8 13.3 153 290-465 113-265 (282)
66 1yks_A Genome polyprotein [con 99.8 1.2E-21 4.1E-26 211.1 2.7 188 301-552 4-200 (440)
67 3h1t_A Type I site-specific re 99.8 5.8E-20 2E-24 204.6 15.9 172 289-479 177-358 (590)
68 2v6i_A RNA helicase; membrane, 99.8 7.9E-20 2.7E-24 196.4 15.7 193 304-552 1-194 (431)
69 2ipc_A Preprotein translocase 99.8 1.2E-18 4.2E-23 196.6 22.2 133 285-435 75-217 (997)
70 2z83_A Helicase/nucleoside tri 99.8 7E-20 2.4E-24 198.4 11.0 198 299-552 15-213 (459)
71 2w00_A HSDR, R.ECOR124I; ATP-b 99.8 5.4E-18 1.9E-22 198.8 16.8 166 277-464 251-440 (1038)
72 2fz4_A DNA repair protein RAD2 99.7 2.7E-17 9.3E-22 162.7 16.7 139 289-465 92-231 (237)
73 3rc3_A ATP-dependent RNA helic 99.7 1E-16 3.4E-21 180.8 12.4 219 269-552 124-343 (677)
74 1z63_A Helicase of the SNF2/RA 99.6 1.4E-15 4.8E-20 165.4 17.1 148 290-463 37-188 (500)
75 3dmq_A RNA polymerase-associat 99.6 6.1E-15 2.1E-19 173.1 14.8 158 289-462 152-316 (968)
76 3crv_A XPD/RAD3 related DNA he 99.6 1.5E-14 5.3E-19 159.9 13.2 129 290-434 3-187 (551)
77 3mwy_W Chromo domain-containin 99.5 4.2E-13 1.4E-17 154.7 19.2 155 289-462 235-405 (800)
78 2vl7_A XPD; helicase, unknown 99.5 9.5E-14 3.3E-18 153.2 9.8 127 286-433 4-188 (540)
79 1z3i_X Similar to RAD54-like; 99.4 1.7E-11 6E-16 137.9 24.5 159 290-462 55-230 (644)
80 3jux_A Protein translocase sub 99.4 6.5E-12 2.2E-16 140.0 20.5 130 286-433 72-258 (822)
81 4a15_A XPD helicase, ATP-depen 99.2 6E-11 2.1E-15 132.9 12.5 82 290-383 3-88 (620)
82 1c4o_A DNA nucleotide excision 98.8 5.2E-08 1.8E-12 109.9 15.6 67 287-369 6-77 (664)
83 1w36_D RECD, exodeoxyribonucle 98.7 1.5E-08 5.1E-13 113.2 8.8 145 292-461 151-298 (608)
84 2d7d_A Uvrabc system protein B 98.5 9.3E-07 3.2E-11 99.6 14.5 66 290-370 12-82 (661)
85 3upu_A ATP-dependent DNA helic 97.8 7.2E-05 2.5E-09 80.4 11.3 134 285-459 20-162 (459)
86 3e1s_A Exodeoxyribonuclease V, 97.8 9.1E-05 3.1E-09 82.0 12.1 126 290-460 189-314 (574)
87 2gk6_A Regulator of nonsense t 97.7 0.00025 8.4E-09 79.3 14.5 70 288-368 178-247 (624)
88 2xzl_A ATP-dependent helicase 97.7 0.0003 1E-08 80.8 15.3 69 289-368 359-427 (802)
89 4b3f_X DNA-binding protein smu 97.7 6.5E-05 2.2E-09 84.3 8.4 67 290-368 189-256 (646)
90 2wjy_A Regulator of nonsense t 97.5 0.00051 1.7E-08 78.9 13.6 69 289-368 355-423 (800)
91 2o0j_A Terminase, DNA packagin 96.7 0.0056 1.9E-07 64.3 10.4 120 290-433 163-286 (385)
92 1t5i_A C_terminal domain of A 96.6 0.0034 1.2E-07 57.9 7.3 52 489-552 3-54 (172)
93 2hjv_A ATP-dependent RNA helic 96.6 0.0032 1.1E-07 57.4 6.9 54 487-552 5-58 (163)
94 2rb4_A ATP-dependent RNA helic 96.6 0.0031 1.1E-07 58.1 6.8 55 488-553 4-58 (175)
95 2p6n_A ATP-dependent RNA helic 96.5 0.0039 1.3E-07 58.7 7.0 68 472-552 10-77 (191)
96 3cpe_A Terminase, DNA packagin 96.5 0.038 1.3E-06 61.1 15.6 143 290-459 163-311 (592)
97 3ec2_A DNA replication protein 96.4 0.011 3.6E-07 54.5 9.3 19 304-322 37-55 (180)
98 1fuk_A Eukaryotic initiation f 96.4 0.0063 2.2E-07 55.5 7.2 52 490-552 2-53 (165)
99 2jgn_A DBX, DDX3, ATP-dependen 96.2 0.01 3.5E-07 55.4 7.9 54 487-552 15-69 (185)
100 3vkw_A Replicase large subunit 95.7 0.023 8E-07 60.5 8.7 83 308-432 164-246 (446)
101 3te6_A Regulatory protein SIR3 95.7 0.069 2.3E-06 54.5 11.8 25 305-330 45-69 (318)
102 2chg_A Replication factor C sm 95.4 0.2 6.7E-06 46.3 13.2 40 419-460 101-140 (226)
103 3lfu_A DNA helicase II; SF1 he 95.1 0.035 1.2E-06 61.6 7.7 72 289-370 8-79 (647)
104 3bos_A Putative DNA replicatio 94.8 0.017 5.8E-07 54.8 3.8 19 304-322 51-69 (242)
105 1l8q_A Chromosomal replication 94.7 0.082 2.8E-06 53.3 8.8 18 305-322 37-54 (324)
106 1uaa_A REP helicase, protein ( 94.6 0.035 1.2E-06 62.2 6.2 81 290-380 2-84 (673)
107 2orw_A Thymidine kinase; TMTK, 94.5 0.036 1.2E-06 51.7 5.3 34 420-458 76-109 (184)
108 3eaq_A Heat resistant RNA depe 94.5 0.053 1.8E-06 51.6 6.4 40 514-553 16-55 (212)
109 2yjt_D ATP-dependent RNA helic 93.3 0.0079 2.7E-07 55.1 0.0 51 491-552 3-53 (170)
110 1iqp_A RFCS; clamp loader, ext 94.2 0.22 7.7E-06 49.4 10.6 39 419-459 109-147 (327)
111 2kjq_A DNAA-related protein; s 94.0 0.039 1.3E-06 49.6 4.1 18 304-321 35-52 (149)
112 2zpa_A Uncharacterized protein 93.8 0.079 2.7E-06 59.2 6.9 113 290-463 175-289 (671)
113 1pjr_A PCRA; DNA repair, DNA r 93.7 0.087 3E-06 59.6 7.2 71 289-369 10-80 (724)
114 1njg_A DNA polymerase III subu 93.7 0.49 1.7E-05 44.0 11.4 38 420-459 126-163 (250)
115 2z4s_A Chromosomal replication 93.7 0.21 7.1E-06 53.1 9.7 18 305-322 130-147 (440)
116 2v1u_A Cell division control p 93.6 0.39 1.3E-05 48.7 11.5 19 304-322 43-61 (387)
117 2b8t_A Thymidine kinase; deoxy 93.6 0.089 3.1E-06 50.8 6.1 113 304-459 11-123 (223)
118 2w58_A DNAI, primosome compone 93.5 0.19 6.6E-06 46.6 8.1 17 306-322 55-71 (202)
119 3syl_A Protein CBBX; photosynt 93.4 0.29 1E-05 48.5 9.7 17 306-322 68-84 (309)
120 1sxj_A Activator 1 95 kDa subu 93.3 0.28 9.7E-06 53.1 10.2 41 420-462 148-189 (516)
121 3u61_B DNA polymerase accessor 93.3 0.24 8.3E-06 49.7 9.0 41 419-460 104-144 (324)
122 1a5t_A Delta prime, HOLB; zinc 93.3 0.13 4.3E-06 52.5 6.9 33 291-323 3-42 (334)
123 1d2n_A N-ethylmaleimide-sensit 92.9 0.78 2.7E-05 44.7 11.8 47 420-466 124-179 (272)
124 3kl4_A SRP54, signal recogniti 92.8 0.47 1.6E-05 50.4 10.7 49 419-467 178-228 (433)
125 1sxj_C Activator 1 40 kDa subu 92.8 0.8 2.7E-05 46.3 12.2 39 419-459 109-147 (340)
126 3u4q_A ATP-dependent helicase/ 92.6 0.096 3.3E-06 62.9 5.7 70 290-367 10-79 (1232)
127 3eie_A Vacuolar protein sortin 92.4 0.88 3E-05 45.8 11.7 50 267-322 14-68 (322)
128 2qby_B CDC6 homolog 3, cell di 92.2 0.36 1.2E-05 49.3 8.7 18 305-322 45-62 (384)
129 1sxj_D Activator 1 41 kDa subu 92.2 0.42 1.4E-05 48.1 9.1 39 419-459 132-170 (353)
130 3pfi_A Holliday junction ATP-d 92.1 1.4 4.8E-05 44.2 12.9 43 268-322 26-72 (338)
131 1sxj_E Activator 1 40 kDa subu 92.0 0.64 2.2E-05 46.9 10.3 42 419-462 133-174 (354)
132 1xx6_A Thymidine kinase; NESG, 91.8 0.33 1.1E-05 45.6 7.2 39 305-355 8-46 (191)
133 1fnn_A CDC6P, cell division co 91.4 0.5 1.7E-05 48.1 8.7 16 307-322 46-61 (389)
134 2qgz_A Helicase loader, putati 91.4 0.44 1.5E-05 48.0 8.0 18 305-322 152-169 (308)
135 1hqc_A RUVB; extended AAA-ATPa 91.2 2.3 8E-05 42.1 13.3 46 268-322 9-55 (324)
136 1sxj_B Activator 1 37 kDa subu 91.0 1.2 4E-05 44.0 10.8 39 420-460 107-145 (323)
137 1w4r_A Thymidine kinase; type 89.9 0.48 1.7E-05 44.7 6.3 38 305-354 20-57 (195)
138 2qby_A CDC6 homolog 1, cell di 89.8 0.33 1.1E-05 49.2 5.6 18 305-322 45-62 (386)
139 3dm5_A SRP54, signal recogniti 89.7 1.3 4.3E-05 47.1 10.1 49 420-468 182-230 (443)
140 2w0m_A SSO2452; RECA, SSPF, un 89.5 0.72 2.5E-05 43.1 7.4 19 304-322 22-40 (235)
141 2zan_A Vacuolar protein sortin 89.1 3.9 0.00013 43.2 13.4 53 267-322 130-184 (444)
142 2j9r_A Thymidine kinase; TK1, 89.0 0.81 2.8E-05 43.8 7.2 39 306-356 29-67 (214)
143 2chq_A Replication factor C sm 88.9 0.62 2.1E-05 46.0 6.7 42 268-322 14-55 (319)
144 2dr3_A UPF0273 protein PH0284; 88.8 2.1 7.1E-05 40.4 10.1 52 304-368 22-73 (247)
145 1jr3_A DNA polymerase III subu 88.5 3.4 0.00012 41.6 12.1 39 419-459 118-156 (373)
146 2hjv_A ATP-dependent RNA helic 88.2 2.8 9.7E-05 37.4 10.1 73 345-428 35-111 (163)
147 1t5i_A C_terminal domain of A 87.5 3.4 0.00012 37.4 10.3 86 345-446 31-120 (172)
148 3e2i_A Thymidine kinase; Zn-bi 87.4 0.92 3.1E-05 43.5 6.4 40 305-356 28-67 (219)
149 2q6t_A DNAB replication FORK h 87.2 1.6 5.3E-05 46.2 8.8 19 305-323 200-218 (444)
150 2gno_A DNA polymerase III, gam 87.0 1.9 6.4E-05 43.3 8.9 40 418-459 80-119 (305)
151 2orv_A Thymidine kinase; TP4A 87.0 2.2 7.5E-05 41.3 8.9 39 305-355 19-57 (234)
152 2p6n_A ATP-dependent RNA helic 86.4 3.9 0.00013 37.8 10.2 86 345-446 54-143 (191)
153 2r6a_A DNAB helicase, replicat 86.3 1.8 6.3E-05 45.8 8.8 21 304-324 202-222 (454)
154 1fuk_A Eukaryotic initiation f 86.3 4.7 0.00016 35.9 10.4 73 345-428 30-106 (165)
155 1w5s_A Origin recognition comp 85.8 1.1 3.9E-05 45.9 6.7 17 306-322 51-69 (412)
156 2rb4_A ATP-dependent RNA helic 84.7 4.2 0.00014 36.6 9.3 73 345-428 34-110 (175)
157 2px0_A Flagellar biosynthesis 84.5 3 0.0001 41.6 8.9 19 305-323 105-123 (296)
158 2cvh_A DNA repair and recombin 83.0 5.9 0.0002 36.5 9.8 20 305-324 20-39 (220)
159 1n0w_A DNA repair protein RAD5 82.7 3.8 0.00013 38.5 8.5 21 304-324 23-43 (243)
160 3pvs_A Replication-associated 82.4 1.6 5.6E-05 46.3 6.2 17 306-322 51-67 (447)
161 3eaq_A Heat resistant RNA depe 82.3 6.3 0.00021 36.9 9.8 71 345-426 31-105 (212)
162 2fna_A Conserved hypothetical 82.1 25 0.00087 34.4 14.8 52 404-459 124-177 (357)
163 1cr0_A DNA primase/helicase; R 81.8 1.5 5.2E-05 43.2 5.4 20 304-323 34-53 (296)
164 3i5x_A ATP-dependent RNA helic 81.8 11 0.00037 40.5 12.7 91 344-447 338-432 (563)
165 3cmu_A Protein RECA, recombina 81.8 2 6.8E-05 53.7 7.4 45 299-355 1415-1465(2050)
166 1g5t_A COB(I)alamin adenosyltr 81.5 4.4 0.00015 38.1 8.2 35 306-352 29-63 (196)
167 2ehv_A Hypothetical protein PH 80.9 1.2 4.1E-05 42.2 4.2 22 303-324 28-49 (251)
168 3co5_A Putative two-component 80.9 1 3.5E-05 39.5 3.4 20 302-321 24-43 (143)
169 3n70_A Transport activator; si 79.6 1.2 4E-05 39.2 3.3 21 302-322 21-41 (145)
170 3hr8_A Protein RECA; alpha and 78.8 2.7 9.3E-05 43.3 6.3 39 305-355 61-99 (356)
171 3sqw_A ATP-dependent RNA helic 78.7 15 0.00052 39.7 12.7 78 344-429 287-368 (579)
172 3m6a_A ATP-dependent protease 78.0 2.5 8.6E-05 46.0 6.0 19 304-322 107-125 (543)
173 2jgn_A DBX, DDX3, ATP-dependen 77.8 4.1 0.00014 37.4 6.6 72 344-426 45-120 (185)
174 3hjh_A Transcription-repair-co 77.4 6.2 0.00021 42.3 8.8 52 304-370 13-64 (483)
175 2i4i_A ATP-dependent RNA helic 76.7 12 0.0004 38.1 10.5 72 344-426 275-350 (417)
176 2z43_A DNA repair and recombin 75.8 7.3 0.00025 39.1 8.4 58 305-368 107-165 (324)
177 1xp8_A RECA protein, recombina 74.8 5.5 0.00019 41.0 7.3 26 304-330 73-98 (366)
178 4a1f_A DNAB helicase, replicat 74.2 2.1 7.1E-05 43.8 3.8 20 305-324 46-65 (338)
179 3bgw_A DNAB-like replicative h 73.5 2.2 7.5E-05 45.2 4.0 23 304-326 196-218 (444)
180 2zr9_A Protein RECA, recombina 73.5 2.9 9.8E-05 42.8 4.7 21 304-324 60-80 (349)
181 3bh0_A DNAB-like replicative h 73.4 6.4 0.00022 39.4 7.2 20 304-323 67-86 (315)
182 3pey_A ATP-dependent RNA helic 73.4 55 0.0019 32.4 14.5 94 344-448 242-340 (395)
183 3pxi_A Negative regulator of g 73.1 3.2 0.00011 46.9 5.4 16 307-322 523-538 (758)
184 3i32_A Heat resistant RNA depe 72.1 13 0.00045 37.0 9.1 71 345-426 28-102 (300)
185 1z5z_A Helicase of the SNF2/RA 72.1 3.7 0.00012 40.4 4.9 39 514-552 95-135 (271)
186 1ls1_A Signal recognition part 71.8 30 0.001 34.2 11.7 52 419-470 179-230 (295)
187 1e9r_A Conjugal transfer prote 71.0 4.1 0.00014 42.5 5.4 27 304-331 52-78 (437)
188 4b4t_M 26S protease regulatory 70.9 1.1 3.8E-05 47.4 0.9 53 266-321 176-231 (434)
189 1r6b_X CLPA protein; AAA+, N-t 70.8 8.5 0.00029 43.3 8.2 19 304-322 206-224 (758)
190 3cf0_A Transitional endoplasmi 70.6 3.1 0.00011 41.2 4.1 53 267-322 11-66 (301)
191 2oca_A DAR protein, ATP-depend 70.6 29 0.001 36.5 12.1 94 345-450 347-444 (510)
192 2d7d_A Uvrabc system protein B 70.2 54 0.0019 36.2 14.5 92 345-447 445-540 (661)
193 3h4m_A Proteasome-activating n 70.0 1.3 4.3E-05 43.3 1.0 52 268-322 14-68 (285)
194 1qvr_A CLPB protein; coiled co 69.6 9.2 0.00031 43.8 8.3 18 305-322 191-208 (854)
195 2oap_1 GSPE-2, type II secreti 68.1 4.5 0.00015 43.7 4.9 39 281-321 237-276 (511)
196 1xti_A Probable ATP-dependent 68.0 44 0.0015 33.3 12.3 86 344-445 249-338 (391)
197 3b9p_A CG5977-PA, isoform A; A 67.4 5.7 0.00019 38.8 5.2 45 268-322 18-71 (297)
198 1lv7_A FTSH; alpha/beta domain 67.4 5.7 0.00019 38.0 5.1 53 267-322 8-62 (257)
199 1hv8_A Putative ATP-dependent 67.2 16 0.00055 36.0 8.7 74 344-428 237-314 (367)
200 2eyq_A TRCF, transcription-rep 67.1 8.6 0.00029 45.7 7.5 79 344-431 811-893 (1151)
201 3fht_A ATP-dependent RNA helic 67.1 89 0.0031 31.1 14.5 120 345-475 266-393 (412)
202 1wp9_A ATP-dependent RNA helic 66.7 23 0.00079 36.1 10.0 75 344-429 360-446 (494)
203 1c4o_A DNA nucleotide excision 66.4 50 0.0017 36.6 13.2 91 345-446 439-533 (664)
204 2qz4_A Paraplegin; AAA+, SPG7, 66.3 2 6.7E-05 41.1 1.5 52 268-322 3-56 (262)
205 3hws_A ATP-dependent CLP prote 66.0 6.4 0.00022 39.9 5.5 19 304-322 50-68 (363)
206 2db3_A ATP-dependent RNA helic 65.6 19 0.00065 37.4 9.2 69 347-426 302-374 (434)
207 1u0j_A DNA replication protein 65.2 10 0.00035 37.3 6.4 44 277-323 73-122 (267)
208 1s2m_A Putative ATP-dependent 64.7 31 0.001 34.7 10.4 72 345-427 258-333 (400)
209 3nbx_X ATPase RAVA; AAA+ ATPas 64.6 6.6 0.00023 42.3 5.4 42 279-321 16-57 (500)
210 1vma_A Cell division protein F 64.4 51 0.0017 32.8 11.7 18 305-322 104-121 (306)
211 1xwi_A SKD1 protein; VPS4B, AA 64.2 7.8 0.00027 38.8 5.6 46 267-322 8-62 (322)
212 2j0s_A ATP-dependent RNA helic 64.1 21 0.00071 36.2 9.0 70 346-426 277-350 (410)
213 2v1x_A ATP-dependent DNA helic 63.8 17 0.00059 39.7 8.7 88 344-447 266-357 (591)
214 3b85_A Phosphate starvation-in 63.6 7.4 0.00025 36.6 5.0 32 291-322 8-39 (208)
215 2l8b_A Protein TRAI, DNA helic 63.4 6.2 0.00021 36.8 4.2 61 291-362 35-97 (189)
216 3e70_C DPA, signal recognition 63.4 1.3E+02 0.0043 30.2 15.2 54 420-473 211-264 (328)
217 1jbk_A CLPB protein; beta barr 63.1 6.6 0.00022 34.7 4.3 18 305-322 43-60 (195)
218 1u94_A RECA protein, recombina 62.7 5.8 0.0002 40.7 4.3 21 304-324 62-82 (356)
219 1ofh_A ATP-dependent HSL prote 62.0 12 0.00042 36.2 6.5 18 305-322 50-67 (310)
220 3nwn_A Kinesin-like protein KI 61.8 4.7 0.00016 41.5 3.4 26 297-322 95-122 (359)
221 2bjv_A PSP operon transcriptio 61.3 4.8 0.00016 38.7 3.3 19 303-321 27-45 (265)
222 3uk6_A RUVB-like 2; hexameric 61.0 6 0.00021 39.8 4.1 43 268-322 41-87 (368)
223 2p65_A Hypothetical protein PF 60.9 4.1 0.00014 36.1 2.5 18 305-322 43-60 (187)
224 4b4t_J 26S protease regulatory 60.8 2.2 7.5E-05 44.7 0.7 53 266-321 143-198 (405)
225 1oyw_A RECQ helicase, ATP-depe 60.7 22 0.00076 38.1 8.7 87 345-447 236-326 (523)
226 2ffh_A Protein (FFH); SRP54, s 60.7 42 0.0014 35.2 10.6 18 306-323 99-116 (425)
227 2zts_A Putative uncharacterize 60.6 7.4 0.00025 36.5 4.4 53 304-368 29-81 (251)
228 3cmu_A Protein RECA, recombina 60.4 8.9 0.0003 48.1 6.0 46 304-362 1080-1125(2050)
229 1bg2_A Kinesin; motor protein, 59.9 5.4 0.00019 40.4 3.5 25 298-322 69-95 (325)
230 3d8b_A Fidgetin-like protein 1 59.4 7.6 0.00026 39.5 4.5 45 268-322 81-134 (357)
231 2r44_A Uncharacterized protein 58.6 3.9 0.00013 40.8 2.1 26 297-322 38-63 (331)
232 2v6i_A RNA helicase; membrane, 57.8 13 0.00046 38.7 6.2 67 345-424 171-238 (431)
233 2zfi_A Kinesin-like protein KI 57.2 6.3 0.00022 40.6 3.5 25 298-322 81-107 (366)
234 2vvg_A Kinesin-2; motor protei 57.2 6.4 0.00022 40.4 3.5 25 298-322 81-107 (350)
235 3dc4_A Kinesin-like protein NO 57.2 5.8 0.0002 40.6 3.2 25 298-322 86-112 (344)
236 2gza_A Type IV secretion syste 57.2 6.1 0.00021 40.5 3.3 21 301-321 171-191 (361)
237 2h58_A Kinesin-like protein KI 57.1 6.4 0.00022 40.0 3.4 26 297-322 71-98 (330)
238 1t5c_A CENP-E protein, centrom 57.1 6.4 0.00022 40.4 3.4 25 298-322 69-95 (349)
239 2nr8_A Kinesin-like protein KI 57.0 6.4 0.00022 40.5 3.4 26 297-322 94-121 (358)
240 3gbj_A KIF13B protein; kinesin 57.0 6.3 0.00022 40.4 3.4 25 298-322 84-110 (354)
241 2qp9_X Vacuolar protein sortin 57.0 7.5 0.00026 39.5 4.0 49 268-322 48-101 (355)
242 3lda_A DNA repair protein RAD5 56.9 35 0.0012 35.4 9.1 19 305-323 178-196 (400)
243 3b6u_A Kinesin-like protein KI 56.8 6.4 0.00022 40.7 3.4 25 298-322 93-119 (372)
244 1x88_A Kinesin-like protein KI 56.8 6.1 0.00021 40.7 3.2 25 298-322 80-106 (359)
245 2y65_A Kinesin, kinesin heavy 56.7 6.5 0.00022 40.5 3.5 25 298-322 76-102 (365)
246 3cmw_A Protein RECA, recombina 56.5 14 0.00046 45.7 6.6 120 306-465 1432-1570(1706)
247 1v8k_A Kinesin-like protein KI 56.2 6.7 0.00023 41.1 3.5 25 298-322 146-172 (410)
248 1goj_A Kinesin, kinesin heavy 56.1 6.4 0.00022 40.4 3.2 24 299-322 73-98 (355)
249 2v3c_C SRP54, signal recogniti 55.9 6.2 0.00021 41.6 3.2 18 306-323 100-117 (432)
250 3vfd_A Spastin; ATPase, microt 55.9 11 0.00038 38.6 5.1 45 268-322 112-165 (389)
251 4etp_A Kinesin-like protein KA 55.7 7.2 0.00025 40.7 3.6 25 298-322 132-158 (403)
252 4a14_A Kinesin, kinesin-like p 55.7 7.3 0.00025 39.8 3.6 25 298-322 75-101 (344)
253 1q57_A DNA primase/helicase; d 55.7 19 0.00065 38.3 7.1 20 304-323 241-260 (503)
254 3lre_A Kinesin-like protein KI 55.5 6.5 0.00022 40.4 3.2 25 298-322 97-123 (355)
255 1yks_A Genome polyprotein [con 55.4 14 0.00047 38.7 5.9 68 345-425 177-245 (440)
256 2c9o_A RUVB-like 1; hexameric 54.9 8.5 0.00029 40.6 4.1 44 268-323 34-81 (456)
257 2wbe_C Bipolar kinesin KRP-130 54.8 6.6 0.00022 40.6 3.1 25 298-322 92-118 (373)
258 2yjt_D ATP-dependent RNA helic 59.8 2.6 8.8E-05 37.9 0.0 73 345-428 30-106 (170)
259 1kgd_A CASK, peripheral plasma 54.6 4.7 0.00016 36.5 1.8 18 304-321 4-21 (180)
260 3cob_A Kinesin heavy chain-lik 54.5 6.3 0.00021 40.7 2.9 25 298-322 71-97 (369)
261 4ag6_A VIRB4 ATPase, type IV s 54.4 10 0.00034 39.0 4.5 21 304-324 34-54 (392)
262 2owm_A Nckin3-434, related to 53.5 7.7 0.00026 41.1 3.4 26 297-322 127-154 (443)
263 1tue_A Replication protein E1; 53.5 15 0.00051 34.9 5.1 45 276-322 27-75 (212)
264 3u06_A Protein claret segregat 53.0 7.2 0.00025 40.9 3.1 26 297-322 129-156 (412)
265 2heh_A KIF2C protein; kinesin, 52.8 7.9 0.00027 40.2 3.3 26 298-323 126-153 (387)
266 3t0q_A AGR253WP; kinesin, alph 52.5 6.5 0.00022 40.3 2.6 25 298-322 77-103 (349)
267 4b4t_L 26S protease subunit RP 52.3 3.1 0.00011 44.0 0.2 54 266-322 176-232 (437)
268 3vaa_A Shikimate kinase, SK; s 51.9 5.9 0.0002 36.4 2.0 20 303-322 23-42 (199)
269 4b4t_I 26S protease regulatory 51.8 5.9 0.0002 41.8 2.2 53 266-321 177-232 (437)
270 2pt7_A CAG-ALFA; ATPase, prote 51.8 6.8 0.00023 39.6 2.6 20 302-321 168-187 (330)
271 2r62_A Cell division protease 51.5 5.4 0.00018 38.3 1.7 18 305-322 44-61 (268)
272 4b4t_H 26S protease regulatory 51.5 3.6 0.00012 43.9 0.4 53 266-321 204-259 (467)
273 1ojl_A Transcriptional regulat 51.4 7.5 0.00026 38.6 2.8 19 304-322 24-42 (304)
274 3io5_A Recombination and repai 51.3 22 0.00076 36.0 6.2 90 307-433 30-124 (333)
275 1ixz_A ATP-dependent metallopr 51.1 19 0.00064 34.2 5.6 50 267-321 12-65 (254)
276 3bfn_A Kinesin-like protein KI 50.8 7.4 0.00025 40.5 2.7 23 300-322 92-116 (388)
277 1f9v_A Kinesin-like protein KA 50.3 6.7 0.00023 40.1 2.3 25 298-322 76-102 (347)
278 2x8a_A Nuclear valosin-contain 50.2 2.3 7.9E-05 41.8 -1.2 52 267-321 6-60 (274)
279 1p9r_A General secretion pathw 50.2 12 0.00041 39.2 4.3 18 304-321 166-183 (418)
280 2j37_W Signal recognition part 49.9 52 0.0018 35.2 9.3 17 307-323 103-119 (504)
281 2eyu_A Twitching motility prot 49.6 6.8 0.00023 38.2 2.1 21 302-322 22-42 (261)
282 3trf_A Shikimate kinase, SK; a 49.0 7.1 0.00024 35.1 2.0 18 305-322 5-22 (185)
283 1j8m_F SRP54, signal recogniti 49.0 46 0.0016 32.9 8.2 17 307-323 100-116 (297)
284 4b4t_K 26S protease regulatory 48.3 4 0.00014 43.1 0.3 54 266-322 167-223 (428)
285 1lvg_A Guanylate kinase, GMP k 48.1 8 0.00027 35.7 2.3 19 304-322 3-21 (198)
286 2z0m_A 337AA long hypothetical 47.8 41 0.0014 32.6 7.6 70 344-428 219-292 (337)
287 2rep_A Kinesin-like protein KI 47.3 7.6 0.00026 40.2 2.2 25 298-322 107-133 (376)
288 1qhx_A CPT, protein (chloramph 47.2 7.4 0.00025 34.6 1.8 18 305-322 3-20 (178)
289 2j41_A Guanylate kinase; GMP, 46.8 8.1 0.00028 35.2 2.1 20 303-322 4-23 (207)
290 3tau_A Guanylate kinase, GMP k 46.4 10 0.00034 35.2 2.7 18 304-321 7-24 (208)
291 2wv9_A Flavivirin protease NS2 46.3 24 0.00082 39.3 6.2 68 345-425 410-478 (673)
292 2xau_A PRE-mRNA-splicing facto 46.1 38 0.0013 38.3 7.9 76 345-426 303-393 (773)
293 3a8t_A Adenylate isopentenyltr 45.9 8.4 0.00029 39.3 2.2 17 306-322 41-57 (339)
294 3lw7_A Adenylate kinase relate 45.6 8 0.00027 33.7 1.8 16 307-322 3-18 (179)
295 3iij_A Coilin-interacting nucl 45.6 9.5 0.00032 34.1 2.3 20 303-322 9-28 (180)
296 3exa_A TRNA delta(2)-isopenten 45.4 7.9 0.00027 39.2 1.8 16 307-322 5-20 (322)
297 4fcw_A Chaperone protein CLPB; 45.2 9.7 0.00033 37.2 2.5 17 306-322 48-64 (311)
298 3foz_A TRNA delta(2)-isopenten 45.1 8 0.00027 39.1 1.8 15 308-322 13-27 (316)
299 1zp6_A Hypothetical protein AT 45.0 7.3 0.00025 35.1 1.4 19 303-321 7-25 (191)
300 1y63_A LMAJ004144AAA protein; 44.8 9.1 0.00031 34.6 2.1 19 304-322 9-27 (184)
301 2qor_A Guanylate kinase; phosp 44.7 9.5 0.00033 35.1 2.2 20 302-321 9-28 (204)
302 1kag_A SKI, shikimate kinase I 44.6 9.4 0.00032 33.7 2.1 17 305-321 4-20 (173)
303 1um8_A ATP-dependent CLP prote 44.5 27 0.00093 35.3 5.9 18 305-322 72-89 (376)
304 1w36_B RECB, exodeoxyribonucle 44.2 19 0.00066 42.8 5.3 62 307-368 18-79 (1180)
305 2xxa_A Signal recognition part 44.1 84 0.0029 32.8 9.7 17 307-323 102-118 (433)
306 1g8p_A Magnesium-chelatase 38 43.8 15 0.00051 36.4 3.7 19 304-322 44-62 (350)
307 2ze6_A Isopentenyl transferase 43.7 8.4 0.00029 37.2 1.7 16 307-322 3-18 (253)
308 3tr0_A Guanylate kinase, GMP k 43.5 11 0.00036 34.3 2.3 18 304-321 6-23 (205)
309 1kht_A Adenylate kinase; phosp 43.2 9.7 0.00033 34.0 2.0 18 305-322 3-20 (192)
310 3jvv_A Twitching mobility prot 42.9 10 0.00034 38.9 2.2 19 303-321 121-139 (356)
311 1ex7_A Guanylate kinase; subst 42.8 9.8 0.00034 35.2 2.0 16 306-321 2-17 (186)
312 3a00_A Guanylate kinase, GMP k 42.8 11 0.00036 34.3 2.2 16 306-321 2-17 (186)
313 2ewv_A Twitching motility prot 42.7 10 0.00034 39.0 2.2 20 303-322 134-153 (372)
314 2yhs_A FTSY, cell division pro 42.6 62 0.0021 34.7 8.4 52 420-471 375-432 (503)
315 3t15_A Ribulose bisphosphate c 42.5 8.8 0.0003 37.8 1.7 16 306-321 37-52 (293)
316 3tbk_A RIG-I helicase domain; 42.2 63 0.0022 33.8 8.5 75 345-426 389-476 (555)
317 1ry6_A Internal kinesin; kines 42.2 14 0.00047 38.0 3.1 19 304-322 82-102 (360)
318 2qmh_A HPR kinase/phosphorylas 42.2 11 0.00038 35.6 2.2 17 305-321 34-50 (205)
319 1z6g_A Guanylate kinase; struc 41.9 14 0.00047 34.6 2.9 20 302-321 20-39 (218)
320 4a15_A XPD helicase, ATP-depen 41.8 26 0.00089 38.5 5.5 34 516-550 436-469 (620)
321 3k1j_A LON protease, ATP-depen 41.4 20 0.00068 39.3 4.5 22 301-322 56-77 (604)
322 3vkg_A Dynein heavy chain, cyt 41.3 20 0.00068 47.0 4.9 48 275-323 873-924 (3245)
323 1in4_A RUVB, holliday junction 41.3 25 0.00086 35.1 4.9 17 306-322 52-68 (334)
324 3ney_A 55 kDa erythrocyte memb 41.1 13 0.00043 34.8 2.4 18 304-321 18-35 (197)
325 1znw_A Guanylate kinase, GMP k 40.6 11 0.00039 34.7 2.0 22 301-322 16-37 (207)
326 3crv_A XPD/RAD3 related DNA he 40.4 1.2E+02 0.0042 32.4 10.6 32 515-547 380-411 (551)
327 4eun_A Thermoresistant glucoki 40.4 11 0.00039 34.4 2.0 19 304-322 28-46 (200)
328 1ly1_A Polynucleotide kinase; 40.2 11 0.00036 33.4 1.7 16 307-322 4-19 (181)
329 4gp7_A Metallophosphoesterase; 40.1 9.8 0.00034 34.1 1.5 20 304-323 8-27 (171)
330 1s96_A Guanylate kinase, GMP k 40.1 12 0.0004 35.5 2.0 21 302-322 13-33 (219)
331 3kb2_A SPBC2 prophage-derived 39.8 11 0.00039 32.9 1.8 16 307-322 3-18 (173)
332 2jlq_A Serine protease subunit 39.5 38 0.0013 35.4 6.2 67 346-425 189-256 (451)
333 1knq_A Gluconate kinase; ALFA/ 39.3 10 0.00035 33.6 1.5 18 305-322 8-25 (175)
334 3hu3_A Transitional endoplasmi 38.4 9.1 0.00031 41.0 1.1 53 268-322 201-255 (489)
335 2ius_A DNA translocase FTSK; n 38.0 18 0.0006 39.0 3.3 21 304-324 166-186 (512)
336 3u4q_B ATP-dependent helicase/ 37.8 21 0.00072 42.3 4.2 39 309-356 5-43 (1166)
337 3dmq_A RNA polymerase-associat 37.7 52 0.0018 38.2 7.4 89 344-447 502-596 (968)
338 3crm_A TRNA delta(2)-isopenten 36.7 15 0.00052 37.1 2.4 16 307-322 7-22 (323)
339 2ce7_A Cell division protein F 36.7 25 0.00084 37.5 4.1 50 268-322 13-66 (476)
340 4gl2_A Interferon-induced heli 36.7 53 0.0018 36.0 7.1 105 345-460 400-517 (699)
341 3cm0_A Adenylate kinase; ATP-b 36.6 10 0.00035 33.9 1.0 19 304-322 3-21 (186)
342 4akg_A Glutathione S-transfera 36.6 33 0.0011 44.4 5.8 47 276-323 891-941 (2695)
343 2iut_A DNA translocase FTSK; n 36.6 25 0.00086 38.4 4.2 24 305-328 214-237 (574)
344 4h1g_A Maltose binding protein 36.3 21 0.0007 40.1 3.6 25 298-322 454-480 (715)
345 3d3q_A TRNA delta(2)-isopenten 36.0 14 0.00046 37.8 1.9 16 307-322 9-24 (340)
346 3nwj_A ATSK2; P loop, shikimat 35.8 19 0.00064 34.8 2.8 21 302-322 45-65 (250)
347 3mm4_A Histidine kinase homolo 35.8 2.4E+02 0.0082 25.2 13.7 135 302-465 17-165 (206)
348 3pxg_A Negative regulator of g 35.4 19 0.00065 38.0 3.0 19 305-323 201-219 (468)
349 3eph_A TRNA isopentenyltransfe 35.2 14 0.00048 38.6 1.9 15 308-322 5-19 (409)
350 3o8b_A HCV NS3 protease/helica 35.2 51 0.0018 36.6 6.5 67 344-425 395-461 (666)
351 3rc3_A ATP-dependent RNA helic 35.0 89 0.003 34.7 8.5 73 348-432 323-401 (677)
352 3kta_A Chromosome segregation 34.9 14 0.00049 32.9 1.7 16 307-322 28-43 (182)
353 2r2a_A Uncharacterized protein 34.9 20 0.00068 33.4 2.7 16 307-322 7-22 (199)
354 1cn3_F Fragment of coat protei 34.9 13 0.00044 22.8 0.9 18 63-80 1-18 (29)
355 1f2t_A RAD50 ABC-ATPase; DNA d 34.3 15 0.00052 32.3 1.7 14 308-321 26-39 (149)
356 3uie_A Adenylyl-sulfate kinase 34.1 14 0.00048 33.8 1.5 19 304-322 24-42 (200)
357 1tev_A UMP-CMP kinase; ploop, 33.7 14 0.00048 33.0 1.4 18 305-322 3-20 (196)
358 3lnc_A Guanylate kinase, GMP k 33.7 18 0.00061 33.9 2.2 19 304-322 26-44 (231)
359 2bdt_A BH3686; alpha-beta prot 33.6 16 0.00053 32.9 1.7 17 306-322 3-19 (189)
360 3t61_A Gluconokinase; PSI-biol 33.4 16 0.00053 33.4 1.7 17 306-322 19-35 (202)
361 1iy2_A ATP-dependent metallopr 33.3 15 0.00052 35.5 1.7 51 268-321 37-89 (278)
362 2rhm_A Putative kinase; P-loop 33.2 15 0.00051 32.9 1.5 18 305-322 5-22 (193)
363 2c95_A Adenylate kinase 1; tra 32.8 20 0.00067 32.2 2.3 20 303-322 7-26 (196)
364 3f9v_A Minichromosome maintena 32.6 15 0.00052 40.2 1.7 15 307-321 329-343 (595)
365 2whx_A Serine protease/ntpase/ 32.6 57 0.0019 35.8 6.4 67 345-424 355-422 (618)
366 1gvn_B Zeta; postsegregational 32.6 16 0.00056 35.9 1.8 16 307-322 35-50 (287)
367 1m7g_A Adenylylsulfate kinase; 32.6 18 0.00061 33.4 2.0 30 292-322 13-42 (211)
368 3eiq_A Eukaryotic initiation f 32.5 55 0.0019 32.8 5.9 71 345-426 280-354 (414)
369 2v54_A DTMP kinase, thymidylat 32.3 19 0.00065 32.6 2.1 19 304-322 3-21 (204)
370 3c8u_A Fructokinase; YP_612366 32.3 16 0.00055 33.6 1.6 17 305-321 22-38 (208)
371 2bwj_A Adenylate kinase 5; pho 32.1 18 0.00063 32.4 2.0 19 304-322 11-29 (199)
372 2r2a_A Uncharacterized protein 31.8 26 0.00088 32.6 3.0 52 421-473 88-143 (199)
373 1via_A Shikimate kinase; struc 31.8 19 0.00065 31.9 1.9 17 306-322 5-21 (175)
374 1ye8_A Protein THEP1, hypothet 31.6 20 0.00068 32.6 2.1 31 418-448 97-128 (178)
375 2z83_A Helicase/nucleoside tri 31.6 38 0.0013 35.5 4.6 68 345-425 190-258 (459)
376 4a74_A DNA repair and recombin 31.4 20 0.00069 32.9 2.1 19 304-322 24-42 (231)
377 3qf7_A RAD50; ABC-ATPase, ATPa 31.2 17 0.00058 37.1 1.7 16 307-322 25-40 (365)
378 1zuh_A Shikimate kinase; alpha 31.1 19 0.00065 31.6 1.8 17 306-322 8-24 (168)
379 1zd8_A GTP:AMP phosphotransfer 30.6 19 0.00067 33.5 1.9 19 304-322 6-24 (227)
380 2iyv_A Shikimate kinase, SK; t 30.6 22 0.00074 31.7 2.1 17 306-322 3-19 (184)
381 3fb4_A Adenylate kinase; psych 30.6 19 0.00065 33.1 1.8 16 307-322 2-17 (216)
382 2ykg_A Probable ATP-dependent 30.3 31 0.0011 37.8 3.8 79 344-429 397-488 (696)
383 2pez_A Bifunctional 3'-phospho 30.3 18 0.00061 32.2 1.5 19 304-322 4-22 (179)
384 1zak_A Adenylate kinase; ATP:A 29.9 21 0.00071 33.1 2.0 18 305-322 5-22 (222)
385 3dl0_A Adenylate kinase; phosp 29.8 20 0.00068 33.0 1.8 16 307-322 2-17 (216)
386 1nlf_A Regulatory protein REPA 29.6 25 0.00086 33.9 2.6 23 302-324 27-49 (279)
387 4akg_A Glutathione S-transfera 29.6 19 0.00067 46.4 2.1 21 302-322 1264-1284(2695)
388 3oiy_A Reverse gyrase helicase 29.5 35 0.0012 34.7 3.8 86 346-448 253-345 (414)
389 1aky_A Adenylate kinase; ATP:A 29.5 22 0.00077 32.8 2.1 18 305-322 4-21 (220)
390 1g41_A Heat shock protein HSLU 29.4 20 0.0007 37.8 2.0 18 305-322 50-67 (444)
391 1nks_A Adenylate kinase; therm 29.2 21 0.00071 31.8 1.8 16 307-322 3-18 (194)
392 3auy_A DNA double-strand break 29.1 19 0.00066 36.6 1.7 15 308-322 28-42 (371)
393 3ice_A Transcription terminati 29.0 1.1E+02 0.0036 32.0 7.2 34 290-323 156-192 (422)
394 1e6c_A Shikimate kinase; phosp 29.0 23 0.00079 31.0 2.0 17 306-322 3-19 (173)
395 3pxi_A Negative regulator of g 28.9 27 0.00093 39.2 3.0 20 304-323 200-219 (758)
396 3asz_A Uridine kinase; cytidin 28.9 21 0.00073 32.6 1.8 18 305-322 6-23 (211)
397 2cdn_A Adenylate kinase; phosp 28.8 23 0.00079 32.1 2.0 17 306-322 21-37 (201)
398 1qf9_A UMP/CMP kinase, protein 28.7 22 0.00074 31.6 1.8 16 307-322 8-23 (194)
399 3kta_B Chromosome segregation 28.5 34 0.0012 31.0 3.1 40 420-460 86-125 (173)
400 1cke_A CK, MSSA, protein (cyti 28.2 24 0.00081 32.6 2.0 17 306-322 6-22 (227)
401 3euj_A Chromosome partition pr 28.1 38 0.0013 36.1 3.8 36 419-458 413-448 (483)
402 2yvu_A Probable adenylyl-sulfa 28.0 21 0.00071 32.0 1.5 19 304-322 12-30 (186)
403 2jtq_A Phage shock protein E; 27.9 83 0.0029 24.1 5.0 27 528-554 40-66 (85)
404 3tif_A Uncharacterized ABC tra 27.8 27 0.00091 33.2 2.3 31 418-449 161-191 (235)
405 2wwf_A Thymidilate kinase, put 27.8 25 0.00085 32.0 2.0 19 304-322 9-27 (212)
406 2vli_A Antibiotic resistance p 27.7 21 0.00072 31.6 1.5 18 305-322 5-22 (183)
407 2if2_A Dephospho-COA kinase; a 27.5 22 0.00077 32.2 1.7 16 307-322 3-18 (204)
408 2i3b_A HCR-ntpase, human cance 27.5 32 0.0011 31.5 2.8 43 418-463 103-146 (189)
409 1nn5_A Similar to deoxythymidy 27.1 26 0.00089 31.8 2.1 19 304-322 8-26 (215)
410 2qt1_A Nicotinamide riboside k 27.1 24 0.00082 32.2 1.8 18 304-321 20-37 (207)
411 2v9p_A Replication protein E1; 26.9 31 0.0011 34.5 2.7 18 304-321 125-142 (305)
412 2plr_A DTMP kinase, probable t 26.9 21 0.00071 32.4 1.3 19 304-322 3-21 (213)
413 2pt5_A Shikimate kinase, SK; a 26.9 25 0.00085 30.7 1.8 16 307-322 2-17 (168)
414 1ak2_A Adenylate kinase isoenz 26.7 25 0.00084 33.0 1.8 19 304-322 15-33 (233)
415 1ukz_A Uridylate kinase; trans 26.4 25 0.00086 31.8 1.8 16 307-322 17-32 (203)
416 3fmp_B ATP-dependent RNA helic 26.0 14 0.00049 38.7 0.0 70 345-425 333-406 (479)
417 1jjv_A Dephospho-COA kinase; P 26.0 25 0.00086 32.0 1.7 16 307-322 4-19 (206)
418 2va8_A SSO2462, SKI2-type heli 25.5 1.7E+02 0.0059 32.1 8.8 76 345-426 252-362 (715)
419 2jaq_A Deoxyguanosine kinase; 25.4 27 0.00091 31.4 1.8 15 307-321 2-16 (205)
420 2bbw_A Adenylate kinase 4, AK4 25.4 27 0.00094 32.9 1.9 18 305-322 27-44 (246)
421 3qks_A DNA double-strand break 25.4 26 0.00089 32.4 1.7 16 307-322 25-40 (203)
422 2i9o_A MHB8A peptide; beta-hai 25.3 28 0.00095 22.5 1.3 10 62-71 12-21 (37)
423 4a2p_A RIG-I, retinoic acid in 25.2 61 0.0021 34.0 4.9 78 344-428 389-479 (556)
424 3be4_A Adenylate kinase; malar 25.2 29 0.00098 32.1 2.0 18 305-322 5-22 (217)
425 1gku_B Reverse gyrase, TOP-RG; 25.1 61 0.0021 38.0 5.2 73 345-430 275-352 (1054)
426 1tf5_A Preprotein translocase 24.8 1.9E+02 0.0064 33.0 8.8 52 347-403 434-487 (844)
427 2cbz_A Multidrug resistance-as 24.7 33 0.0011 32.6 2.3 18 304-321 30-47 (237)
428 1e4v_A Adenylate kinase; trans 24.6 29 0.00098 32.0 1.8 16 307-322 2-17 (214)
429 1nij_A Hypothetical protein YJ 24.6 63 0.0022 32.0 4.5 37 420-460 151-187 (318)
430 2pbr_A DTMP kinase, thymidylat 24.5 29 0.00098 30.9 1.8 16 307-322 2-17 (195)
431 1jr3_D DNA polymerase III, del 24.5 71 0.0024 31.6 4.9 56 405-463 62-118 (343)
432 4e22_A Cytidylate kinase; P-lo 24.4 33 0.0011 32.8 2.3 19 304-322 26-44 (252)
433 2p5t_B PEZT; postsegregational 24.2 22 0.00076 33.9 1.0 17 306-322 33-49 (253)
434 1uf9_A TT1252 protein; P-loop, 24.2 29 0.00098 31.2 1.8 16 307-322 10-25 (203)
435 2r8r_A Sensor protein; KDPD, P 24.0 62 0.0021 30.9 4.1 20 305-324 5-25 (228)
436 2z0h_A DTMP kinase, thymidylat 24.0 30 0.001 30.9 1.8 15 308-322 3-17 (197)
437 3a4m_A L-seryl-tRNA(SEC) kinas 23.8 28 0.00097 33.3 1.7 17 306-322 5-21 (260)
438 2pcj_A ABC transporter, lipopr 23.8 31 0.0011 32.5 1.9 31 418-449 156-186 (224)
439 3tlx_A Adenylate kinase 2; str 23.6 32 0.0011 32.7 2.0 19 304-322 28-46 (243)
440 1sgw_A Putative ABC transporte 23.5 38 0.0013 31.8 2.5 18 304-321 34-51 (214)
441 1r6b_X CLPA protein; AAA+, N-t 23.4 43 0.0015 37.4 3.4 16 307-322 490-505 (758)
442 1rz3_A Hypothetical protein rb 23.2 30 0.001 31.6 1.7 16 307-322 24-39 (201)
443 3vkg_A Dynein heavy chain, cyt 23.1 30 0.001 45.4 2.2 20 302-321 1301-1320(3245)
444 2ghi_A Transport protein; mult 23.1 36 0.0012 32.8 2.3 39 420-460 173-211 (260)
445 2ff7_A Alpha-hemolysin translo 23.1 37 0.0012 32.5 2.3 42 418-461 161-202 (247)
446 2dhr_A FTSH; AAA+ protein, hex 23.1 29 0.001 37.1 1.8 50 268-322 28-81 (499)
447 2pze_A Cystic fibrosis transme 23.0 37 0.0013 32.1 2.3 41 418-460 146-187 (229)
448 1ypw_A Transitional endoplasmi 23.0 26 0.00087 39.9 1.3 19 304-322 237-255 (806)
449 2f1r_A Molybdopterin-guanine d 22.9 23 0.00078 32.1 0.8 16 307-322 4-19 (171)
450 3h1t_A Type I site-specific re 22.9 1.2E+02 0.004 32.6 6.6 80 344-429 438-526 (590)
451 1g6h_A High-affinity branched- 22.6 34 0.0012 32.9 2.0 31 418-449 169-199 (257)
452 2qen_A Walker-type ATPase; unk 22.4 46 0.0016 32.4 3.0 18 304-321 30-47 (350)
453 3qkt_A DNA double-strand break 22.2 31 0.0011 34.5 1.7 15 308-322 26-40 (339)
454 1rj9_A FTSY, signal recognitio 22.1 42 0.0014 33.3 2.6 53 421-473 185-243 (304)
455 3gfo_A Cobalt import ATP-bindi 22.1 38 0.0013 33.1 2.2 44 418-462 159-204 (275)
456 3n70_A Transport activator; si 22.1 69 0.0024 27.4 3.8 37 422-460 78-114 (145)
457 1vht_A Dephospho-COA kinase; s 22.0 33 0.0011 31.5 1.7 16 307-322 6-21 (218)
458 1b0u_A Histidine permease; ABC 21.6 37 0.0012 32.9 2.0 31 418-449 169-199 (262)
459 1mv5_A LMRA, multidrug resista 21.5 35 0.0012 32.5 1.8 18 304-321 27-44 (243)
460 3b9q_A Chloroplast SRP recepto 21.4 32 0.0011 34.2 1.5 18 305-322 100-117 (302)
461 2xb4_A Adenylate kinase; ATP-b 21.4 34 0.0012 31.8 1.7 16 307-322 2-17 (223)
462 4g1u_C Hemin import ATP-bindin 21.2 41 0.0014 32.6 2.3 29 420-449 165-193 (266)
463 1ji0_A ABC transporter; ATP bi 21.2 42 0.0014 31.9 2.3 41 418-459 155-196 (240)
464 1qvr_A CLPB protein; coiled co 21.2 34 0.0012 39.0 1.9 16 307-322 590-605 (854)
465 1tf7_A KAIC; homohexamer, hexa 21.1 57 0.002 34.8 3.6 28 304-331 38-65 (525)
466 2d2e_A SUFC protein; ABC-ATPas 21.0 43 0.0015 32.1 2.3 40 420-460 161-200 (250)
467 3fho_A ATP-dependent RNA helic 20.9 25 0.00086 37.3 0.7 73 345-428 357-433 (508)
468 2i7u_A Four-alpha-helix bundle 20.8 28 0.00094 25.0 0.6 8 63-70 28-35 (62)
469 1z5z_A Helicase of the SNF2/RA 20.5 2.3E+02 0.0077 27.2 7.5 76 345-430 112-193 (271)
470 1ltq_A Polynucleotide kinase; 20.4 36 0.0012 32.9 1.7 16 307-322 4-19 (301)
471 2zu0_C Probable ATP-dependent 20.4 44 0.0015 32.4 2.3 40 420-460 182-221 (267)
472 2ixe_A Antigen peptide transpo 20.3 45 0.0015 32.4 2.3 42 418-460 172-214 (271)
473 2qi9_C Vitamin B12 import ATP- 20.3 45 0.0015 32.0 2.3 37 423-460 154-190 (249)
474 3nh6_A ATP-binding cassette SU 20.2 33 0.0011 34.2 1.3 39 420-460 208-246 (306)
475 2yz2_A Putative ABC transporte 20.1 45 0.0016 32.2 2.3 42 418-460 154-195 (266)
476 1htw_A HI0065; nucleotide-bind 20.1 37 0.0013 30.2 1.5 18 304-321 32-49 (158)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=4.1e-40 Score=354.50 Aligned_cols=267 Identities=25% Similarity=0.403 Sum_probs=236.3
Q ss_pred cccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCC
Q 008605 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (560)
Q Consensus 267 ~~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~ 346 (560)
..+|++++|++.++++|.++||..|||+|.++||.+++|+|++++||||||||++|++|++..+..... .....++
T Consensus 55 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~----~~~~~~~ 130 (434)
T 2db3_A 55 IQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPH----ELELGRP 130 (434)
T ss_dssp CCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCC----CCCTTCC
T ss_pred cCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhccc----ccccCCc
Confidence 468999999999999999999999999999999999999999999999999999999999999876421 1234578
Q ss_pred EEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEE
Q 008605 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (560)
Q Consensus 347 ~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LVi 426 (560)
++|||+|||+|+.|+++.+++++.. ..+++.+++||.....+...+..+++|+|+||++|.+++.+....+.++++|||
T Consensus 131 ~~lil~PtreLa~Q~~~~~~~~~~~-~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVl 209 (434)
T 2db3_A 131 QVVIVSPTRELAIQIFNEARKFAFE-SYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVL 209 (434)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHTTT-SSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEE
T ss_pred cEEEEecCHHHHHHHHHHHHHHhcc-CCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEE
Confidence 9999999999999999999998763 568889999999998888888889999999999999999988888999999999
Q ss_pred ccccccCCCCChHHHHHHHHhhC--CCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCCC
Q 008605 427 DEVDILFNDEDFEVALQSLISSS--PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504 (560)
Q Consensus 427 DEah~ll~d~~f~~~l~~Il~~~--~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~ 504 (560)
||||+|+ +++|...+..|+..+ +..+|+++||||+|..+..++..++.++..+...........+.+.++.+..
T Consensus 210 DEah~~~-~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~--- 285 (434)
T 2db3_A 210 DEADRML-DMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNK--- 285 (434)
T ss_dssp ETHHHHT-STTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCG---
T ss_pred ccHhhhh-ccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCc---
Confidence 9999999 889999999999875 5789999999999999998888888887776655555666778888887764
Q ss_pred CCCChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhh
Q 008605 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFF 552 (560)
Q Consensus 505 ~~~~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l 552 (560)
..|...|.+++..... ++||||+++++|+.+++.|+..
T Consensus 286 ---------~~k~~~l~~~l~~~~~-~~lVF~~t~~~a~~l~~~L~~~ 323 (434)
T 2db3_A 286 ---------YAKRSKLIEILSEQAD-GTIVFVETKRGADFLASFLSEK 323 (434)
T ss_dssp ---------GGHHHHHHHHHHHCCT-TEEEECSSHHHHHHHHHHHHHT
T ss_pred ---------HHHHHHHHHHHHhCCC-CEEEEEeCcHHHHHHHHHHHhC
Confidence 3678889999988654 4999999999999999999875
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.5e-37 Score=329.55 Aligned_cols=271 Identities=26% Similarity=0.402 Sum_probs=230.2
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhh---------cc
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQ---------GL 338 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~---------~~ 338 (560)
.+|++++|++.++++|..+||..|+++|.++|+.++.|+|++++||||||||++|++|+++.+...... ..
T Consensus 15 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 94 (417)
T 2i4i_A 15 ESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGR 94 (417)
T ss_dssp SSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBT
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccc
Confidence 679999999999999999999999999999999999999999999999999999999999988754210 00
Q ss_pred CCCCCCCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccC
Q 008605 339 SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418 (560)
Q Consensus 339 ~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l 418 (560)
......++++|||+||++|+.|+++.++++... .++++..++|+.....+...+..+++|+|+||++|..++..+.+.+
T Consensus 95 ~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~ 173 (417)
T 2i4i_A 95 YGRRKQYPISLVLAPTRELAVQIYEEARKFSYR-SRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGL 173 (417)
T ss_dssp TBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTT-SSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBCC
T ss_pred cccccCCccEEEECCcHHHHHHHHHHHHHHhCc-CCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCcCh
Confidence 011233578999999999999999999998763 5789999999999988888888889999999999999999888889
Q ss_pred CCccEEEEccccccCCCCChHHHHHHHHhh--CCC--CCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCcee
Q 008605 419 INLRCAILDEVDILFNDEDFEVALQSLISS--SPV--TAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEE 494 (560)
Q Consensus 419 ~~l~~LViDEah~ll~d~~f~~~l~~Il~~--~~~--~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~ 494 (560)
.++++|||||||+++ +.+|...+..++.. ++. ..|++++|||++..+...+..++.++..+..........++.+
T Consensus 174 ~~~~~iViDEah~~~-~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 252 (417)
T 2i4i_A 174 DFCKYLVLDEADRML-DMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQ 252 (417)
T ss_dssp TTCCEEEESSHHHHH-HTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCSSEEE
T ss_pred hhCcEEEEEChhHhh-ccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccCceE
Confidence 999999999999999 77899999999885 332 6899999999999988888888887766655555556677888
Q ss_pred EEEEcCCCCCCCCChhhhhhhHHHHHHHHHHhC-CCCcEEEEeCchHHHHHHHHHHHhh
Q 008605 495 FLVDCSGDQESDKTPETAFLNKKSALLQLIEKS-PVSKTIVFCNKVCFSYKCNNLFGFF 552 (560)
Q Consensus 495 ~~v~~~~~~~~~~~~~~~~~~K~~~L~~lL~~~-~~~ktIIFcnS~~~a~~la~~Lk~l 552 (560)
.++.+.. ..+...|.++++.. ..+++||||+++++|+.+++.|+..
T Consensus 253 ~~~~~~~------------~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~ 299 (417)
T 2i4i_A 253 KVVWVEE------------SDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE 299 (417)
T ss_dssp EEEECCG------------GGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHT
T ss_pred EEEEecc------------HhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHC
Confidence 8777654 36788889999876 4679999999999999999999875
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=2.2e-37 Score=328.15 Aligned_cols=265 Identities=24% Similarity=0.379 Sum_probs=234.3
Q ss_pred cccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCC
Q 008605 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (560)
Q Consensus 267 ~~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~ 346 (560)
..+|++++|++.++++|.++||..|+++|.++|+.++.|+|+++++|||+|||++|++|+++.+.. ...++
T Consensus 36 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~---------~~~~~ 106 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI---------QVRET 106 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCT---------TSCSC
T ss_pred CCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhh---------ccCCc
Confidence 468999999999999999999999999999999999999999999999999999999999976632 13467
Q ss_pred EEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEE
Q 008605 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (560)
Q Consensus 347 ~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LVi 426 (560)
++|||+||++|+.|+++.+++++.. .++.+..++|+.....+...+..+++|+|+||++|.+++..+.+.+..+++|||
T Consensus 107 ~~lil~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vVi 185 (410)
T 2j0s_A 107 QALILAPTRELAVQIQKGLLALGDY-MNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVL 185 (410)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTT-TTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHHhcc-CCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEE
Confidence 8999999999999999999998763 678899999999988888888888999999999999999988888899999999
Q ss_pred ccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCCCCC
Q 008605 427 DEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506 (560)
Q Consensus 427 DEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~~~ 506 (560)
||||++. +.+|...+..++..++...|++++|||++..+.+.+..++.++..+...........+.+.+..+...
T Consensus 186 DEah~~~-~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 260 (410)
T 2j0s_A 186 DEADEML-NKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVERE---- 260 (410)
T ss_dssp ETHHHHT-STTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESST----
T ss_pred ccHHHHH-hhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcH----
Confidence 9999999 78899999999999999999999999999998887777888777776655555667788888877653
Q ss_pred CChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhhc
Q 008605 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFFS 553 (560)
Q Consensus 507 ~~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l~ 553 (560)
..|...|.+++.....+++||||+++++|+.+++.|+..+
T Consensus 261 -------~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~ 300 (410)
T 2j0s_A 261 -------EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREAN 300 (410)
T ss_dssp -------THHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTT
T ss_pred -------HhHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhCC
Confidence 2577888888888777899999999999999999998753
No 4
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=1.3e-36 Score=301.53 Aligned_cols=210 Identities=30% Similarity=0.478 Sum_probs=191.1
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCE
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 347 (560)
.+|++++|++.++++|.++||..|+++|.++|+.++.|+|++++||||||||++|++|++..+..... .....+++
T Consensus 29 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~----~~~~~~~~ 104 (242)
T 3fe2_A 29 LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPF----LERGDGPI 104 (242)
T ss_dssp SSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCC----CCTTCCCS
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccc----cccCCCCE
Confidence 68999999999999999999999999999999999999999999999999999999999998864311 12245788
Q ss_pred EEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEc
Q 008605 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427 (560)
Q Consensus 348 aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViD 427 (560)
+|||+||++|+.|+++.++++... .++++..++|+.....+...+..+++|+|+||++|.+++..+...+.++++||||
T Consensus 105 ~lil~Pt~~L~~Q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViD 183 (242)
T 3fe2_A 105 CLVLAPTRELAQQVQQVAAEYCRA-CRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLD 183 (242)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHH-TTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEET
T ss_pred EEEEeCcHHHHHHHHHHHHHHHhh-cCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEe
Confidence 999999999999999999998764 5789999999999988888888889999999999999999888889999999999
Q ss_pred cccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCC
Q 008605 428 EVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGP 483 (560)
Q Consensus 428 Eah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~ 483 (560)
|||+++ +++|...+..+++.++.++|+++||||+|+.+.+++..++.++..+...
T Consensus 184 Eah~l~-~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~ 238 (242)
T 3fe2_A 184 EADRML-DMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIG 238 (242)
T ss_dssp THHHHH-HTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEEC
T ss_pred CHHHHh-hhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEec
Confidence 999999 7899999999999999999999999999999999999999887766543
No 5
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=9.1e-36 Score=315.17 Aligned_cols=263 Identities=21% Similarity=0.363 Sum_probs=234.0
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCE
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 347 (560)
.+|+++++++.+++.|.++||..|+++|.++|+.++.|+++++++|||+|||++|++|+++.+... ..+.+
T Consensus 40 ~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~---------~~~~~ 110 (414)
T 3eiq_A 40 DSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD---------LKATQ 110 (414)
T ss_dssp CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTT---------SCSCC
T ss_pred cCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhc---------CCcee
Confidence 579999999999999999999999999999999999999999999999999999999999876432 34678
Q ss_pred EEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhc-CCCcEEEECHHHHHHHHHhccccCCCccEEEE
Q 008605 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ-EGVDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (560)
Q Consensus 348 aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~-~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LVi 426 (560)
+||++||++|+.|+++.+++++.. .++.+..++|+.....+...+. .+++|+|+||++|.+++..+.+.+..+++|||
T Consensus 111 ~lil~P~~~L~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vVi 189 (414)
T 3eiq_A 111 ALVLAPTRELAQQIQKVVMALGDY-MGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVL 189 (414)
T ss_dssp EEEECSSHHHHHHHHHHHHHHGGG-SCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEE
T ss_pred EEEEeChHHHHHHHHHHHHHHhcc-cCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEE
Confidence 999999999999999999998764 5788888999988877777665 67899999999999999988888899999999
Q ss_pred ccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCCCCC
Q 008605 427 DEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506 (560)
Q Consensus 427 DEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~~~ 506 (560)
||||++. +.+|...+..++..++...|++++|||++..+...+..++.++..+...........+.+.++.+...
T Consensus 190 DEah~~~-~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 264 (414)
T 3eiq_A 190 DEADEML-SRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVERE---- 264 (414)
T ss_dssp CSHHHHH-HTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSS----
T ss_pred ECHHHhh-ccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChH----
Confidence 9999998 78899999999999999999999999999999888888888887777666666677788888877653
Q ss_pred CChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhh
Q 008605 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFF 552 (560)
Q Consensus 507 ~~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l 552 (560)
..+...|..++.....+++||||+++++|+.+++.|+..
T Consensus 265 -------~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~ 303 (414)
T 3eiq_A 265 -------EWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHAR 303 (414)
T ss_dssp -------TTHHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTT
T ss_pred -------HhHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhc
Confidence 258889999999888889999999999999999999865
No 6
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=7.7e-36 Score=315.18 Aligned_cols=268 Identities=22% Similarity=0.320 Sum_probs=230.5
Q ss_pred CccccccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC--CcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCC
Q 008605 263 DFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG--KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSK 340 (560)
Q Consensus 263 ~~~~~~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g--~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~ 340 (560)
+..+..+|+++++++.++++|.++||..|+++|.++|+.++.+ +++++++|||+|||++|++|++..+...
T Consensus 20 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~------- 92 (412)
T 3fht_A 20 PLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA------- 92 (412)
T ss_dssp TTCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT-------
T ss_pred CccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhc-------
Confidence 3455689999999999999999999999999999999999987 8999999999999999999999876432
Q ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHh-ccccCC
Q 008605 341 STSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE-GILQLI 419 (560)
Q Consensus 341 ~~~~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~-~~~~l~ 419 (560)
..++++|||+||++|+.|+++.++++......+.+....++...... ...+++|+|+||++|.+++.. +.+.+.
T Consensus 93 --~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~ 167 (412)
T 3fht_A 93 --NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPK 167 (412)
T ss_dssp --SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGG
T ss_pred --CCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChh
Confidence 35678999999999999999999999875557888888887665432 234589999999999999865 566788
Q ss_pred CccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEc
Q 008605 420 NLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDC 499 (560)
Q Consensus 420 ~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~ 499 (560)
++++|||||||++..+.++...+..+...++...|++++|||++..+..++..++.++..+...........+.+.++.+
T Consensus 168 ~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (412)
T 3fht_A 168 KIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLC 247 (412)
T ss_dssp GCCEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEEC
T ss_pred hCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEc
Confidence 99999999999998557899999999999999999999999999999998989998888877666666677788887776
Q ss_pred CCCCCCCCChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhhc
Q 008605 500 SGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFFS 553 (560)
Q Consensus 500 ~~~~~~~~~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l~ 553 (560)
... ..+...|..++.....+++||||+++++|+.++..|+..+
T Consensus 248 ~~~-----------~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~ 290 (412)
T 3fht_A 248 SSR-----------DEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEG 290 (412)
T ss_dssp SSH-----------HHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTT
T ss_pred CCh-----------HHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCC
Confidence 642 3678888888888777899999999999999999998763
No 7
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=2.3e-35 Score=311.35 Aligned_cols=263 Identities=24% Similarity=0.392 Sum_probs=228.5
Q ss_pred cccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCC
Q 008605 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (560)
Q Consensus 267 ~~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~ 346 (560)
..+|++++|++.++++|.++||..|+++|.++++.++.|+++++++|||+|||++|++|++..+... ..+.
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~---------~~~~ 90 (400)
T 1s2m_A 20 GNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK---------LNKI 90 (400)
T ss_dssp -CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT---------SCSC
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc---------cCCc
Confidence 3689999999999999999999999999999999999999999999999999999999999876321 3466
Q ss_pred EEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEE
Q 008605 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (560)
Q Consensus 347 ~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LVi 426 (560)
++||++|+++|+.|+++.++++... .++.+..++|+.....+...+..+++|+|+||++|..++......+.++++|||
T Consensus 91 ~~lil~P~~~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIi 169 (400)
T 1s2m_A 91 QALIMVPTRELALQTSQVVRTLGKH-CGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIM 169 (400)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTT-TTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEE
T ss_pred cEEEEcCCHHHHHHHHHHHHHHhcc-cCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEE
Confidence 8999999999999999999998763 578899999999888877777788999999999999999887778899999999
Q ss_pred ccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCCCCC
Q 008605 427 DEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506 (560)
Q Consensus 427 DEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~~~ 506 (560)
||||++. +.+|...+..++..++...|++++|||++..+.+.+...+..+..+... .......+.+++..+..
T Consensus 170 DEaH~~~-~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----- 242 (400)
T 1s2m_A 170 DEADKML-SRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLM-EELTLKGITQYYAFVEE----- 242 (400)
T ss_dssp ESHHHHS-SHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCC-SSCBCTTEEEEEEECCG-----
T ss_pred eCchHhh-hhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEec-cccccCCceeEEEEech-----
Confidence 9999998 6789999999999998899999999999999988888888776655433 23444566776666543
Q ss_pred CChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhhc
Q 008605 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFFS 553 (560)
Q Consensus 507 ~~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l~ 553 (560)
..|...|..++.....+++||||+++++|+.+++.|+..+
T Consensus 243 -------~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~ 282 (400)
T 1s2m_A 243 -------RQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLG 282 (400)
T ss_dssp -------GGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHT
T ss_pred -------hhHHHHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhcC
Confidence 3678888899988888899999999999999999998753
No 8
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=2.2e-35 Score=309.91 Aligned_cols=264 Identities=23% Similarity=0.355 Sum_probs=226.7
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCE
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 347 (560)
.+|++++|++.++++|.++||..|+++|.++++.++.|+++++.+|||+|||++|++|++..+.. ...+++
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~---------~~~~~~ 78 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP---------VTGQVS 78 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCC---------CTTCCC
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcc---------cCCCee
Confidence 57999999999999999999999999999999999999999999999999999999999977532 134678
Q ss_pred EEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcC-CCcEEEECHHHHHHHHHhccccCCCccEEEE
Q 008605 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQE-GVDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (560)
Q Consensus 348 aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~-~~~IlV~TP~~L~~ll~~~~~~l~~l~~LVi 426 (560)
+||++||++|+.|+++.++++.....++++..++|+.....+...+.. .++|+|+||++|..++......+.++++|||
T Consensus 79 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vVi 158 (391)
T 1xti_A 79 VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFIL 158 (391)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEE
Confidence 999999999999999999999775457899999999887776666653 4799999999999999888888999999999
Q ss_pred ccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCc-cccCCCceeEEEEcCCCCCC
Q 008605 427 DEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGM-HRISPGLEEFLVDCSGDQES 505 (560)
Q Consensus 427 DEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~-~~~~~~i~~~~v~~~~~~~~ 505 (560)
||||++.+..++...+..++...+...|++++|||++..+...+..++..+..+..... ......+.+.++.+..
T Consensus 159 DEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 234 (391)
T 1xti_A 159 DECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKD---- 234 (391)
T ss_dssp CSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCG----
T ss_pred eCHHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCc----
Confidence 99999984357888999999999889999999999999888888888887766654432 2344566777776654
Q ss_pred CCChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhh
Q 008605 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFF 552 (560)
Q Consensus 506 ~~~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l 552 (560)
..+...|.+++.....+++||||+++++|+.+++.|+..
T Consensus 235 --------~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~ 273 (391)
T 1xti_A 235 --------NEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ 273 (391)
T ss_dssp --------GGHHHHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHT
T ss_pred --------hhHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhC
Confidence 367788899998888889999999999999999999875
No 9
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=2.7e-36 Score=327.72 Aligned_cols=266 Identities=22% Similarity=0.323 Sum_probs=180.7
Q ss_pred ccccccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC--CcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCC
Q 008605 264 FFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG--KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKS 341 (560)
Q Consensus 264 ~~~~~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g--~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~ 341 (560)
..+..+|.+++|++.++++|.++||..|+++|.++|+.++.+ ++++++||||||||++|++|++..+...
T Consensus 88 ~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~-------- 159 (479)
T 3fmp_B 88 LYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-------- 159 (479)
T ss_dssp CCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTT--------
T ss_pred ccCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhc--------
Confidence 345678999999999999999999999999999999999987 8999999999999999999999776432
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHh-ccccCCC
Q 008605 342 TSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE-GILQLIN 420 (560)
Q Consensus 342 ~~~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~-~~~~l~~ 420 (560)
..++++|||+||++|+.|+++.++.+..+...+.+....++...... ...+++|+|+||++|.+++.+ +.+.+.+
T Consensus 160 -~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 235 (479)
T 3fmp_B 160 -NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKK 235 (479)
T ss_dssp -SCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGGG
T ss_pred -CCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCccc
Confidence 34678999999999999999999999876567888888887654322 134579999999999999866 5567889
Q ss_pred ccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcC
Q 008605 421 LRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCS 500 (560)
Q Consensus 421 l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~ 500 (560)
+++|||||||+++...+|...+..+...++..+|++++|||++..+..++...++++..+...........+.+.++.+.
T Consensus 236 ~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 315 (479)
T 3fmp_B 236 IKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCS 315 (479)
T ss_dssp CCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC-----------------
T ss_pred CCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeC
Confidence 99999999999984468999999999999999999999999999999988888888877766655556667777777765
Q ss_pred CCCCCCCChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhh
Q 008605 501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFF 552 (560)
Q Consensus 501 ~~~~~~~~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l 552 (560)
.. ..+...|..++......++||||+++..|+.++..|+..
T Consensus 316 ~~-----------~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~ 356 (479)
T 3fmp_B 316 SR-----------DEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKE 356 (479)
T ss_dssp ----------------------------------------------------
T ss_pred CH-----------HHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhC
Confidence 43 256777888887777789999999999999999999765
No 10
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=3.4e-35 Score=282.82 Aligned_cols=203 Identities=28% Similarity=0.478 Sum_probs=185.3
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCE
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 347 (560)
.+|++++|++.++++|.++||..|+++|.++++.++.|+|+++++|||+|||++|++|++..+... ..+++
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~---------~~~~~ 73 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK---------KDNIQ 73 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT---------SCSCC
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc---------CCCee
Confidence 579999999999999999999999999999999999999999999999999999999999876422 35678
Q ss_pred EEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEc
Q 008605 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427 (560)
Q Consensus 348 aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViD 427 (560)
+||++||++|+.|+++.++.+.....++.+..++|+.....+...+..+++|+|+||+++.+++.++...+.++++||+|
T Consensus 74 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViD 153 (206)
T 1vec_A 74 AMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLD 153 (206)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEE
T ss_pred EEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEE
Confidence 99999999999999999999876534788999999998888888888889999999999999999888889999999999
Q ss_pred cccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEE
Q 008605 428 EVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVV 480 (560)
Q Consensus 428 Eah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i 480 (560)
|||++. +.+|...+..++..++...|+++||||+|..+.+++..++.++..+
T Consensus 154 Eah~~~-~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 154 EADKLL-SQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp THHHHT-STTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred ChHHhH-hhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 999999 6789999999999999899999999999999999999998877654
No 11
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=6.5e-36 Score=306.93 Aligned_cols=206 Identities=24% Similarity=0.374 Sum_probs=183.2
Q ss_pred ccccccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC--CcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCC
Q 008605 264 FFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG--KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKS 341 (560)
Q Consensus 264 ~~~~~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g--~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~ 341 (560)
..+..+|++++|++.++++|..+||..|+++|.++||.++.| +|++++||||||||++|++|+++++...
T Consensus 88 ~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~-------- 159 (300)
T 3fmo_B 88 LYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-------- 159 (300)
T ss_dssp CCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTT--------
T ss_pred cCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhcc--------
Confidence 445689999999999999999999999999999999999998 9999999999999999999999887432
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHh-ccccCCC
Q 008605 342 TSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE-GILQLIN 420 (560)
Q Consensus 342 ~~~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~-~~~~l~~ 420 (560)
..++++|||+|||+||.|+++.++.+..+...+.+..++|+...... ...+++|+|+||++|++++.+ +.+.+.+
T Consensus 160 -~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~IlV~TP~~l~~~l~~~~~~~l~~ 235 (300)
T 3fmo_B 160 -NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKK 235 (300)
T ss_dssp -SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTTCCCCGGG
T ss_pred -CCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh---hcCCCCEEEECHHHHHHHHHhcCCCChhh
Confidence 45779999999999999999999999876557889999988765432 245689999999999999966 5677899
Q ss_pred ccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEe
Q 008605 421 LRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVM 481 (560)
Q Consensus 421 l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~ 481 (560)
+++|||||||+|++..+|...+..|++.++..+|+++||||++..+..++..++.++.++.
T Consensus 236 l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~ 296 (300)
T 3fmo_B 236 IKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIK 296 (300)
T ss_dssp CSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEE
T ss_pred ceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEE
Confidence 9999999999999437899999999999999999999999999999999999999887764
No 12
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=8.2e-35 Score=304.89 Aligned_cols=261 Identities=23% Similarity=0.374 Sum_probs=224.6
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC--CcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCC
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG--KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGS 345 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g--~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~ 345 (560)
.+|++++|++.++++|.++||..|+++|.++++.++.+ +++++++|||+|||++|++|++..+... ..+
T Consensus 5 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~---------~~~ 75 (395)
T 3pey_A 5 KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE---------DAS 75 (395)
T ss_dssp CSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT---------CCS
T ss_pred cCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccC---------CCC
Confidence 68999999999999999999999999999999999998 8999999999999999999999876432 356
Q ss_pred CEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEE
Q 008605 346 PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAI 425 (560)
Q Consensus 346 ~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LV 425 (560)
+++|||+||++|+.|+++.++++... .++.+...+++..... ...+++|+|+||++|..++......+.++++||
T Consensus 76 ~~~lil~P~~~L~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iI 150 (395)
T 3pey_A 76 PQAICLAPSRELARQTLEVVQEMGKF-TKITSQLIVPDSFEKN----KQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFV 150 (395)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTT-SCCCEEEESTTSSCTT----SCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEE
T ss_pred ccEEEECCCHHHHHHHHHHHHHHhcc-cCeeEEEEecCchhhh----ccCCCCEEEEcHHHHHHHHHcCCcccccCCEEE
Confidence 78999999999999999999998764 5677777777654332 124689999999999999988888899999999
Q ss_pred EccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCCCC
Q 008605 426 LDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505 (560)
Q Consensus 426 iDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~~ 505 (560)
|||||++..+.++...+..+...++...|++++|||++..+...+...+.....+...........+.+.+..+...
T Consensus 151 iDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 227 (395)
T 3pey_A 151 LDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNE--- 227 (395)
T ss_dssp EETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSH---
T ss_pred EEChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCch---
Confidence 99999998557899999999999999999999999999999888888888877776665555666677777766542
Q ss_pred CCChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhhc
Q 008605 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFFS 553 (560)
Q Consensus 506 ~~~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l~ 553 (560)
..+...+..++.....+++||||+++++|+.+++.|+..+
T Consensus 228 --------~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~ 267 (395)
T 3pey_A 228 --------ADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEG 267 (395)
T ss_dssp --------HHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTT
T ss_pred --------HHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcC
Confidence 3677888888888778899999999999999999998753
No 13
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.8e-35 Score=290.03 Aligned_cols=208 Identities=29% Similarity=0.518 Sum_probs=179.9
Q ss_pred ccccc-cCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCC
Q 008605 268 KSFKE-LGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (560)
Q Consensus 268 ~sF~~-l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~ 346 (560)
.+|++ +++++.++++|.++||..|+++|.++|+.+++|+|+++++|||||||++|++|++..+...... .....++
T Consensus 19 ~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~---~~~~~~~ 95 (228)
T 3iuy_A 19 CRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPIS---REQRNGP 95 (228)
T ss_dssp CSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC------------CCC
T ss_pred hhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccch---hhccCCC
Confidence 57999 7999999999999999999999999999999999999999999999999999999887543211 1224678
Q ss_pred EEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEE
Q 008605 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (560)
Q Consensus 347 ~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LVi 426 (560)
++||++||++|+.|+++.++.+.. .++++..++|+.....+...+..+++|+|+||++|.+++......+.++++|||
T Consensus 96 ~~lil~Pt~~L~~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 173 (228)
T 3iuy_A 96 GMLVLTPTRELALHVEAECSKYSY--KGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVI 173 (228)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHCC--TTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEE
T ss_pred cEEEEeCCHHHHHHHHHHHHHhcc--cCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEE
Confidence 899999999999999999999863 578899999998888777788888999999999999999888888999999999
Q ss_pred ccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEe
Q 008605 427 DEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVM 481 (560)
Q Consensus 427 DEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~ 481 (560)
||||+++ +.+|...+..++..++.++|+++||||+|+.+.+++..++.++.++.
T Consensus 174 DEah~~~-~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 174 DEADKML-DMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp CCHHHHH-HTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred ECHHHHh-ccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 9999999 78999999999999999999999999999999999988888877664
No 14
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=1e-35 Score=296.51 Aligned_cols=227 Identities=32% Similarity=0.496 Sum_probs=187.6
Q ss_pred cccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCC
Q 008605 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (560)
Q Consensus 267 ~~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~ 346 (560)
..+|++++|++.++++|..+||..|+++|.++|+.++.|+|+++++|||||||++|++|++..+..............++
T Consensus 22 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~ 101 (253)
T 1wrb_A 22 IENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYP 101 (253)
T ss_dssp CCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCC
T ss_pred cCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCc
Confidence 46899999999999999999999999999999999999999999999999999999999999887542111111123467
Q ss_pred EEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEE
Q 008605 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (560)
Q Consensus 347 ~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LVi 426 (560)
++|||+||++|+.|+++.++++... .++.+..++|+.....+...+..+++|+|+||++|.+++....+.+.++++||+
T Consensus 102 ~~lil~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lVi 180 (253)
T 1wrb_A 102 KCLILAPTRELAIQILSESQKFSLN-TPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVL 180 (253)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHHTT-SSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEE
T ss_pred eEEEEECCHHHHHHHHHHHHHHhcc-CCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEE
Confidence 9999999999999999999998763 578899999999888888888888999999999999999988888999999999
Q ss_pred ccccccCCCCChHHHHHHHHhhC--CC--CCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeE
Q 008605 427 DEVDILFNDEDFEVALQSLISSS--PV--TAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF 495 (560)
Q Consensus 427 DEah~ll~d~~f~~~l~~Il~~~--~~--~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~ 495 (560)
||||+++ +.+|...+..++..+ +. .+|+++||||++..+.+++..++.++..+..........+++|.
T Consensus 181 DEah~~~-~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~q~ 252 (253)
T 1wrb_A 181 DEADRML-DMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIKQE 252 (253)
T ss_dssp ETHHHHH-HTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC------------
T ss_pred eCHHHHH-hCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCCCCcCCceec
Confidence 9999999 788999999999853 43 68999999999999999999999888777655444455555543
No 15
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1.6e-35 Score=310.99 Aligned_cols=262 Identities=23% Similarity=0.372 Sum_probs=182.7
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCE
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 347 (560)
.+|++++|++.++++|..+||..|+++|.++++.++.|+++++++|||+|||++|++|++..+... ..+++
T Consensus 21 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~---------~~~~~ 91 (394)
T 1fuu_A 21 YKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS---------VKAPQ 91 (394)
T ss_dssp CSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT---------CCSCC
T ss_pred CChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc---------CCCCC
Confidence 579999999999999999999999999999999999999999999999999999999999876432 35678
Q ss_pred EEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEc
Q 008605 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427 (560)
Q Consensus 348 aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViD 427 (560)
+||++|+++|+.|+++.++++... .++++..++|+.....+...+. +++|+|+||++|...+......+.++++||+|
T Consensus 92 ~lil~P~~~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiD 169 (394)
T 1fuu_A 92 ALMLAPTRELALQIQKVVMALAFH-MDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILD 169 (394)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTT-SCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEEEE
T ss_pred EEEEcCCHHHHHHHHHHHHHHhcc-CCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEEE
Confidence 999999999999999999998763 5788999999988766655554 58999999999999998888888999999999
Q ss_pred cccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCCCCCC
Q 008605 428 EVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507 (560)
Q Consensus 428 Eah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~~~~ 507 (560)
|||++. +.+|...+..++..++...|++++|||++..+.+.+..++..+..+...........+.+.++.+...
T Consensus 170 Eah~~~-~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 243 (394)
T 1fuu_A 170 EADEML-SSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEE----- 243 (394)
T ss_dssp THHHHH-HTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC-----------------------
T ss_pred ChHHhh-CCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCch-----
Confidence 999998 67899999999999999999999999999998888888888776665554444555566666555432
Q ss_pred ChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhh
Q 008605 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFF 552 (560)
Q Consensus 508 ~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l 552 (560)
..+...+..++.....+++||||+++++|+.+++.|+..
T Consensus 244 ------~~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~ 282 (394)
T 1fuu_A 244 ------EYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRND 282 (394)
T ss_dssp ---------------------------------------------
T ss_pred ------hhHHHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHc
Confidence 135677777777767789999999999999999999764
No 16
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=1.1e-34 Score=285.33 Aligned_cols=204 Identities=31% Similarity=0.384 Sum_probs=182.4
Q ss_pred cccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCC
Q 008605 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (560)
Q Consensus 267 ~~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~ 346 (560)
..+|+++++++.++++|.++||..|+++|.++++.++.|+|+++++|||+|||++|++|++..+... ..++
T Consensus 23 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~---------~~~~ 93 (230)
T 2oxc_A 23 PADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE---------NLST 93 (230)
T ss_dssp -CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT---------SCSC
T ss_pred CCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc---------CCCc
Confidence 3689999999999999999999999999999999999999999999999999999999999876432 3467
Q ss_pred EEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEE
Q 008605 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (560)
Q Consensus 347 ~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LVi 426 (560)
++|||+||++|+.|+++.++++.....++++..++|+.....+...+ .+++|+|+||++|.+++..+.+.+.++++||+
T Consensus 94 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 172 (230)
T 2oxc_A 94 QILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGSIRLFIL 172 (230)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCGGGCCEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCcccccCCEEEe
Confidence 89999999999999999999987644478999999998877766555 46999999999999999888788889999999
Q ss_pred ccccccCCCCC-hHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEe
Q 008605 427 DEVDILFNDED-FEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVM 481 (560)
Q Consensus 427 DEah~ll~d~~-f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~ 481 (560)
||||+++ +.+ |...+..+++.++..+|+++||||+|..+.+++..++.++.++.
T Consensus 173 DEah~~~-~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~ 227 (230)
T 2oxc_A 173 DEADKLL-EEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVR 227 (230)
T ss_dssp SSHHHHH-STTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEEC
T ss_pred CCchHhh-cCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEE
Confidence 9999999 565 99999999999998999999999999999888888888876653
No 17
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.2e-33 Score=293.15 Aligned_cols=256 Identities=25% Similarity=0.426 Sum_probs=221.0
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC-CcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCC
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG-KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g-~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~ 346 (560)
.+|++++|++.++++|.++||..|+++|.++++.++++ +++++.+|||+|||++|++|++..+.. ..+.
T Consensus 6 ~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~----------~~~~ 75 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE----------NNGI 75 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS----------SSSC
T ss_pred CchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc----------cCCC
Confidence 57999999999999999999999999999999999988 699999999999999999999876532 2467
Q ss_pred EEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEE
Q 008605 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (560)
Q Consensus 347 ~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LVi 426 (560)
++||++|+++|+.|+++.++++... ..+.+..++|+.....+...+. +++|+|+||++|...+..+...+.++++||+
T Consensus 76 ~~lil~P~~~L~~q~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIi 153 (367)
T 1hv8_A 76 EAIILTPTRELAIQVADEIESLKGN-KNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFIL 153 (367)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHHCS-SCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEE
T ss_pred cEEEEcCCHHHHHHHHHHHHHHhCC-CCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEE
Confidence 8999999999999999999998763 5688899999988877666655 5899999999999999888788899999999
Q ss_pred ccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCCCCC
Q 008605 427 DEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506 (560)
Q Consensus 427 DEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~~~ 506 (560)
||||++. +.+|...+..++..++...|++++|||++..+...+..++.+...+... ....+.+.++.+..
T Consensus 154 DEah~~~-~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~----- 223 (367)
T 1hv8_A 154 DEADEML-NMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAK----INANIEQSYVEVNE----- 223 (367)
T ss_dssp ETHHHHH-TTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECC----SSSSSEEEEEECCG-----
T ss_pred eCchHhh-hhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEec----CCCCceEEEEEeCh-----
Confidence 9999998 7889999999999998899999999999999888888888876665433 23356677766654
Q ss_pred CChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhhc
Q 008605 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFFS 553 (560)
Q Consensus 507 ~~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l~ 553 (560)
.++...|.+++.. ...++||||+++++|+.+++.|+..+
T Consensus 224 -------~~~~~~l~~~l~~-~~~~~lvf~~~~~~~~~l~~~L~~~~ 262 (367)
T 1hv8_A 224 -------NERFEALCRLLKN-KEFYGLVFCKTKRDTKELASMLRDIG 262 (367)
T ss_dssp -------GGHHHHHHHHHCS-TTCCEEEECSSHHHHHHHHHHHHHTT
T ss_pred -------HHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHhcC
Confidence 3677888888863 45789999999999999999998753
No 18
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=2.8e-34 Score=286.65 Aligned_cols=204 Identities=26% Similarity=0.447 Sum_probs=186.0
Q ss_pred cccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCC
Q 008605 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (560)
Q Consensus 267 ~~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~ 346 (560)
..+|+++++++.++++|.++||..|+++|.++|+.++.|+|+++++|||||||++|++|++..+... ..++
T Consensus 42 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~---------~~~~ 112 (249)
T 3ber_A 42 TKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLET---------PQRL 112 (249)
T ss_dssp HCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHS---------CCSS
T ss_pred cCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcC---------CCCc
Confidence 4689999999999999999999999999999999999999999999999999999999999988653 3467
Q ss_pred EEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHh-ccccCCCccEEE
Q 008605 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE-GILQLINLRCAI 425 (560)
Q Consensus 347 ~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~-~~~~l~~l~~LV 425 (560)
++||++||++|+.|+++.++++... .++++..++|+.....+...+..+++|+|+||++|.+++.. +.+.+.++++||
T Consensus 113 ~~lil~Ptr~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lV 191 (249)
T 3ber_A 113 FALVLTPTRELAFQISEQFEALGSS-IGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLV 191 (249)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHGG-GTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhcc-CCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEE
Confidence 8999999999999999999998763 46889999999988887777788899999999999998876 556788999999
Q ss_pred EccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEe
Q 008605 426 LDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVM 481 (560)
Q Consensus 426 iDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~ 481 (560)
|||||++. +.+|...+..++..++..+|+++||||++..+.+++..++.++..+.
T Consensus 192 iDEah~l~-~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~ 246 (249)
T 3ber_A 192 MDEADRIL-NMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCA 246 (249)
T ss_dssp ECSHHHHH-HTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEE
T ss_pred EcChhhhh-ccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEE
Confidence 99999999 77999999999999999999999999999999999988998887664
No 19
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=5.1e-35 Score=285.27 Aligned_cols=206 Identities=28% Similarity=0.476 Sum_probs=183.9
Q ss_pred cccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCC
Q 008605 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (560)
Q Consensus 267 ~~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~ 346 (560)
..+|+++++++.++++|.++||..|+++|.++++.+++|+|+++++|||+|||++|++|++..+... ..++
T Consensus 3 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~---------~~~~ 73 (219)
T 1q0u_A 3 ETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE---------RAEV 73 (219)
T ss_dssp -CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT---------SCSC
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhC---------cCCc
Confidence 3679999999999999999999999999999999999999999999999999999999999876432 3467
Q ss_pred EEEEEcCCHHHHHHHHHHHHhhhcCCC---CceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccE
Q 008605 347 RVVILAPTAELASQVLSNCRSLSKCGV---PFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRC 423 (560)
Q Consensus 347 ~aLil~PtreLa~Qi~~~l~~l~~~~~---~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~ 423 (560)
++||++||++|+.|+++.++++..... .+.+..++|+.....+...+..+++|+|+||+++.+++..+...+..+++
T Consensus 74 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~ 153 (219)
T 1q0u_A 74 QAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHI 153 (219)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCE
T ss_pred eEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceE
Confidence 899999999999999999999876321 57888999998776666666668999999999999999888888899999
Q ss_pred EEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeC
Q 008605 424 AILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMG 482 (560)
Q Consensus 424 LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~ 482 (560)
|||||||++. +.+|...+..++..++..+|+++||||+|.++.+++..++.++..+..
T Consensus 154 lViDEah~~~-~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~ 211 (219)
T 1q0u_A 154 LVVDEADLML-DMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHV 211 (219)
T ss_dssp EEECSHHHHH-HTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEEC
T ss_pred EEEcCchHHh-hhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEe
Confidence 9999999999 788999999999999989999999999999999999999988877643
No 20
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=1.5e-34 Score=285.86 Aligned_cols=204 Identities=23% Similarity=0.416 Sum_probs=174.4
Q ss_pred cccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCC
Q 008605 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (560)
Q Consensus 267 ~~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~ 346 (560)
..+|++++|++.++++|..+||..|+++|.++|+.++.|+|+++++|||||||++|++|+++.+... ..++
T Consensus 29 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~---------~~~~ 99 (237)
T 3bor_A 29 VDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE---------FKET 99 (237)
T ss_dssp CCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT---------SCSC
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc---------CCCc
Confidence 3689999999999999999999999999999999999999999999999999999999999876421 3467
Q ss_pred EEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCC-CcEEEECHHHHHHHHHhccccCCCccEEE
Q 008605 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEG-VDVLIATPGRFMFLIKEGILQLINLRCAI 425 (560)
Q Consensus 347 ~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~-~~IlV~TP~~L~~ll~~~~~~l~~l~~LV 425 (560)
++||++||++|+.|+++.+++++.. .++.+..++|+.....+...+..+ ++|+|+||++|.+++..+.+.+..+++||
T Consensus 100 ~~lil~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lV 178 (237)
T 3bor_A 100 QALVLAPTRELAQQIQKVILALGDY-MGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFV 178 (237)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTT-TTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEE
T ss_pred eEEEEECcHHHHHHHHHHHHHHhhh-cCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEE
Confidence 8999999999999999999998763 467888899998877776666655 89999999999999998888889999999
Q ss_pred EccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEe
Q 008605 426 LDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVM 481 (560)
Q Consensus 426 iDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~ 481 (560)
|||||+++ +.+|...+..+++.++..+|+++||||+|+.+.+++..++.++..+.
T Consensus 179 iDEah~~~-~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~ 233 (237)
T 3bor_A 179 LDEADEML-SRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRIL 233 (237)
T ss_dssp EESHHHHH-HTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC
T ss_pred ECCchHhh-ccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEE
Confidence 99999998 78899999999999999999999999999999999999998877664
No 21
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=5.3e-34 Score=274.35 Aligned_cols=203 Identities=33% Similarity=0.530 Sum_probs=183.0
Q ss_pred cccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEE
Q 008605 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRV 348 (560)
Q Consensus 269 sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~a 348 (560)
+|++++|++.++++|.++||..|+++|.++++.+++|+++++++|||+|||++|++|++..+... .....++++
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~------~~~~~~~~~ 75 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPS------QERGRKPRA 75 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC------CCTTCCCSE
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhc------cccCCCCcE
Confidence 69999999999999999999999999999999999999999999999999999999999877431 112457899
Q ss_pred EEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEcc
Q 008605 349 VILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDE 428 (560)
Q Consensus 349 Lil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDE 428 (560)
||++||++|+.|+++.++++.. .+++..++|+.....+...+..+++|+|+||+++.+++..+...+.++++||+||
T Consensus 76 lil~P~~~L~~q~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE 152 (207)
T 2gxq_A 76 LVLTPTRELALQVASELTAVAP---HLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDE 152 (207)
T ss_dssp EEECSSHHHHHHHHHHHHHHCT---TSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEES
T ss_pred EEEECCHHHHHHHHHHHHHHhh---cceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEC
Confidence 9999999999999999999864 3788899999888777777777899999999999999998888899999999999
Q ss_pred ccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEe
Q 008605 429 VDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVM 481 (560)
Q Consensus 429 ah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~ 481 (560)
||++. +.+|...+..++..++...|++++|||+|..+.+++..++.++.++.
T Consensus 153 ah~~~-~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 204 (207)
T 2gxq_A 153 ADEML-SMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLIN 204 (207)
T ss_dssp HHHHH-HTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEE
T ss_pred hhHhh-ccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEE
Confidence 99998 77899999999999999999999999999999988888888877653
No 22
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.6e-33 Score=277.48 Aligned_cols=208 Identities=26% Similarity=0.417 Sum_probs=182.1
Q ss_pred cccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCC
Q 008605 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (560)
Q Consensus 267 ~~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~ 346 (560)
..+|+++++++.++++|.++||..|+++|.++++.++.|+|+++++|||+|||++|++|+++.+..... ....++
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~-----~~~~~~ 98 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQW-----TSTDGL 98 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTC-----CGGGCC
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcc-----cccCCc
Confidence 468999999999999999999999999999999999999999999999999999999999998875321 123467
Q ss_pred EEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhc-cccCCCccEEE
Q 008605 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG-ILQLINLRCAI 425 (560)
Q Consensus 347 ~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~-~~~l~~l~~LV 425 (560)
++||++||++|+.|+++.++.++.. .++.+..++|+.....+...+ .+++|+|+||++|.+++... ...+.++++||
T Consensus 99 ~~lil~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lV 176 (236)
T 2pl3_A 99 GVLIISPTRELAYQTFEVLRKVGKN-HDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLV 176 (236)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTT-SSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhCC-CCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEE
Confidence 8999999999999999999998763 568899999998877666555 46999999999999988764 46788999999
Q ss_pred EccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeC
Q 008605 426 LDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMG 482 (560)
Q Consensus 426 iDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~ 482 (560)
+||||++. +.+|...+..++..++..+|+++||||++..+.++...++.++.++..
T Consensus 177 iDEah~~~-~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~ 232 (236)
T 2pl3_A 177 LDEADRIL-DMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWV 232 (236)
T ss_dssp ETTHHHHH-HTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEEC
T ss_pred EeChHHHh-cCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEe
Confidence 99999999 789999999999999999999999999999999888888888777654
No 23
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=5.2e-34 Score=286.86 Aligned_cols=206 Identities=26% Similarity=0.455 Sum_probs=180.1
Q ss_pred cccccccC--CCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCC
Q 008605 267 RKSFKELG--CSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSG 344 (560)
Q Consensus 267 ~~sF~~l~--L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~ 344 (560)
..+|++++ +++.++++|.++||..|+++|.++++.++.|+|++++||||||||++|++|+++.+..... ....
T Consensus 51 ~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~-----~~~~ 125 (262)
T 3ly5_A 51 DTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRF-----MPRN 125 (262)
T ss_dssp GGCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTC-----CGGG
T ss_pred cCChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccc-----cccC
Confidence 45788887 9999999999999999999999999999999999999999999999999999998876321 1234
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhc-cccCCCccE
Q 008605 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG-ILQLINLRC 423 (560)
Q Consensus 345 ~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~-~~~l~~l~~ 423 (560)
++++|||+||++|+.|+++.++++... ..+.+..++|+.....+...+..+++|+|+||+++.+++... .+.+.++++
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~ 204 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTH-HVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQC 204 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTT-CCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhh-cCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCE
Confidence 778999999999999999999998764 568889999999988888888788999999999999988774 467889999
Q ss_pred EEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCeE
Q 008605 424 AILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKV 479 (560)
Q Consensus 424 LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~ 479 (560)
|||||||+|+ +++|...+..|++.++..+|+++||||+|..+.+++...+....+
T Consensus 205 lViDEah~l~-~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~~ 259 (262)
T 3ly5_A 205 LVIDEADRIL-DVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPL 259 (262)
T ss_dssp EEECSHHHHH-HTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCCE
T ss_pred EEEcChHHHh-hhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCCe
Confidence 9999999999 789999999999999999999999999999999988878765443
No 24
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=8.4e-34 Score=276.86 Aligned_cols=204 Identities=24% Similarity=0.416 Sum_probs=175.6
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCE
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 347 (560)
.+|+++++++.+++.|.++||..|+++|.++++.+++|+|+++++|||+|||++|++|+++.+... ..+++
T Consensus 14 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~---------~~~~~ 84 (224)
T 1qde_A 14 YKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS---------VKAPQ 84 (224)
T ss_dssp CCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT---------CCSCC
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc---------CCCce
Confidence 679999999999999999999999999999999999999999999999999999999999877432 35678
Q ss_pred EEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEc
Q 008605 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427 (560)
Q Consensus 348 aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViD 427 (560)
+||++||++|+.|+++.++.+... .++++..++|+.....+...+.. ++|+|+||++|.+++..+...+.++++||+|
T Consensus 85 ~lil~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViD 162 (224)
T 1qde_A 85 ALMLAPTRELALQIQKVVMALAFH-MDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKIKMFILD 162 (224)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTT-SCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTSSCCTTCCEEEEE
T ss_pred EEEEECCHHHHHHHHHHHHHHhcc-cCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcchhhCcEEEEc
Confidence 999999999999999999998763 57888999999877666655544 9999999999999998888889999999999
Q ss_pred cccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCC
Q 008605 428 EVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGP 483 (560)
Q Consensus 428 Eah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~ 483 (560)
|||++. +.+|...+..++..++...|++++|||++..+.+++..++.++..+...
T Consensus 163 Eah~~~-~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~ 217 (224)
T 1qde_A 163 EADEML-SSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVK 217 (224)
T ss_dssp THHHHH-HTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC--
T ss_pred ChhHHh-hhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEec
Confidence 999998 7889999999999999999999999999999999999999888776543
No 25
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=8.3e-34 Score=276.40 Aligned_cols=204 Identities=25% Similarity=0.404 Sum_probs=181.4
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCE
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 347 (560)
.+|++++|++.++++|.++||..|+++|.++++.+++|+|+++++|||+|||++|++|++..+.. ...+++
T Consensus 14 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~---------~~~~~~ 84 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP---------VTGQVS 84 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCC---------CTTCCC
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhc---------cCCCEE
Confidence 57999999999999999999999999999999999999999999999999999999999987532 134568
Q ss_pred EEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcC-CCcEEEECHHHHHHHHHhccccCCCccEEEE
Q 008605 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQE-GVDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (560)
Q Consensus 348 aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~-~~~IlV~TP~~L~~ll~~~~~~l~~l~~LVi 426 (560)
+||++||++|+.|+++.++++.....++++..++|+.....+...+.. .++|+|+||+++..++......+.++++||+
T Consensus 85 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lVi 164 (220)
T 1t6n_A 85 VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFIL 164 (220)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEE
Confidence 999999999999999999998765347899999999887776666654 4799999999999999888888999999999
Q ss_pred ccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEE
Q 008605 427 DEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVV 480 (560)
Q Consensus 427 DEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i 480 (560)
||||+++++.+|...+..+++.++..+|++++|||++..+.+++..++.++..+
T Consensus 165 DEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i 218 (220)
T 1t6n_A 165 DECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEI 218 (220)
T ss_dssp ESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEE
T ss_pred cCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEE
Confidence 999999843578899999999998899999999999999988888888887665
No 26
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=2.8e-33 Score=311.60 Aligned_cols=271 Identities=18% Similarity=0.286 Sum_probs=212.3
Q ss_pred cccccC----CCHHHHHHHHHCCCCCChHHHHHHHHHHH--cCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCC
Q 008605 269 SFKELG----CSDYMIESLKRQNFLRPSQIQAMAFPPVV--EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKST 342 (560)
Q Consensus 269 sF~~l~----L~~~ll~~L~~~g~~~pt~iQ~~aip~il--~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~ 342 (560)
+|+++. |+++++++|..+||..|+|+|.++|+.++ .|+|++++||||+|||++|++|+++.+..... ..
T Consensus 18 ~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~-----~~ 92 (579)
T 3sqw_A 18 TLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF-----DS 92 (579)
T ss_dssp CHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT-----SS
T ss_pred CHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccc-----cc
Confidence 455554 99999999999999999999999999999 78899999999999999999999999876532 22
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHhhhcC---CCCceEEEEeCCcchHHHHHHhc-CCCcEEEECHHHHHHHHHhc-ccc
Q 008605 343 SGSPRVVILAPTAELASQVLSNCRSLSKC---GVPFRSMVVTGGFRQKTQLENLQ-EGVDVLIATPGRFMFLIKEG-ILQ 417 (560)
Q Consensus 343 ~~~~~aLil~PtreLa~Qi~~~l~~l~~~---~~~i~v~~l~gg~~~~~~~~~l~-~~~~IlV~TP~~L~~ll~~~-~~~ 417 (560)
..++++|||+||++|+.|+++.++++... ...+.+..++|+.....+...+. .+++|+|+||++|.+++... ...
T Consensus 93 ~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~ 172 (579)
T 3sqw_A 93 QYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKF 172 (579)
T ss_dssp TTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccc
Confidence 44679999999999999999999988632 13567888999998887777664 47999999999999988764 456
Q ss_pred CCCccEEEEccccccCCCCChHHHHHHHHhhCC-------CCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCC----cc
Q 008605 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSP-------VTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPG----MH 486 (560)
Q Consensus 418 l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~-------~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~----~~ 486 (560)
+..+++|||||||+|+ +++|...+..|+..++ ..+|+++||||++..+...+..++..+..+.... ..
T Consensus 173 ~~~~~~lViDEah~l~-~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~ 251 (579)
T 3sqw_A 173 FRFVDYKVLDEADRLL-EIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEP 251 (579)
T ss_dssp CTTCCEEEEETHHHHT-STTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSC
T ss_pred cccCCEEEEEChHHhh-cCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCcccc
Confidence 8899999999999999 8899999998877653 3779999999999998887777776654443211 22
Q ss_pred ccCCCceeEEEEcCCCCCCCCChhhhhhhHHHHHHHHHHh-CCCCcEEEEeCchHHHHHHHHHHHhh
Q 008605 487 RISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEK-SPVSKTIVFCNKVCFSYKCNNLFGFF 552 (560)
Q Consensus 487 ~~~~~i~~~~v~~~~~~~~~~~~~~~~~~K~~~L~~lL~~-~~~~ktIIFcnS~~~a~~la~~Lk~l 552 (560)
.....+.+.++...... ......+..+...+.. ....++||||+|+..|+.++..|+..
T Consensus 252 ~~~~~i~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~ 311 (579)
T 3sqw_A 252 EAHERIDQSVVISEKFA-------NSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNE 311 (579)
T ss_dssp SSCTTEEEEEEEESSTT-------HHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHH
T ss_pred ccccccceEEEEecchh-------hhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHh
Confidence 33345566655554321 1112333444444444 45689999999999999999999875
No 27
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=4.2e-33 Score=308.33 Aligned_cols=265 Identities=18% Similarity=0.298 Sum_probs=207.2
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHH--cCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEc
Q 008605 275 CSDYMIESLKRQNFLRPSQIQAMAFPPVV--EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILA 352 (560)
Q Consensus 275 L~~~ll~~L~~~g~~~pt~iQ~~aip~il--~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~ 352 (560)
|++.++++|.++||..|+|+|.++|+.++ .++|++++||||||||++|++|+++.+..... ....++++|||+
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~-----~~~~~~~~lil~ 153 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF-----DSQYMVKAVIVA 153 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT-----SSTTSCCEEEEC
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccc-----cccCCeeEEEEc
Confidence 99999999999999999999999999999 67899999999999999999999999876532 223467899999
Q ss_pred CCHHHHHHHHHHHHhhhcCC---CCceEEEEeCCcchHHHHHHh-cCCCcEEEECHHHHHHHHHhc-cccCCCccEEEEc
Q 008605 353 PTAELASQVLSNCRSLSKCG---VPFRSMVVTGGFRQKTQLENL-QEGVDVLIATPGRFMFLIKEG-ILQLINLRCAILD 427 (560)
Q Consensus 353 PtreLa~Qi~~~l~~l~~~~---~~i~v~~l~gg~~~~~~~~~l-~~~~~IlV~TP~~L~~ll~~~-~~~l~~l~~LViD 427 (560)
||++|+.|+++.++++.... ..+.+..++|+.....+...+ ..+++|+|+||++|.+++.+. ...+..+++||||
T Consensus 154 Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViD 233 (563)
T 3i5x_A 154 PTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLD 233 (563)
T ss_dssp SSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred CcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEe
Confidence 99999999999999875421 346788899998887776666 347999999999999988764 3467889999999
Q ss_pred cccccCCCCChHHHHHHHHhhC-------CCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCC----CccccCCCceeEE
Q 008605 428 EVDILFNDEDFEVALQSLISSS-------PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGP----GMHRISPGLEEFL 496 (560)
Q Consensus 428 Eah~ll~d~~f~~~l~~Il~~~-------~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~----~~~~~~~~i~~~~ 496 (560)
|||+|+ +++|...+..|+..+ ...+|+++||||++..+...+..++..+..+... ........+.+.+
T Consensus 234 Eah~l~-~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (563)
T 3i5x_A 234 EADRLL-EIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSV 312 (563)
T ss_dssp THHHHT-STTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEE
T ss_pred CHHHHh-ccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEE
Confidence 999999 789999999887664 3478999999999998887777777665444321 1122334455655
Q ss_pred EEcCCCCCCCCChhhhhhhHHHHHHHHHHh-CCCCcEEEEeCchHHHHHHHHHHHhh
Q 008605 497 VDCSGDQESDKTPETAFLNKKSALLQLIEK-SPVSKTIVFCNKVCFSYKCNNLFGFF 552 (560)
Q Consensus 497 v~~~~~~~~~~~~~~~~~~K~~~L~~lL~~-~~~~ktIIFcnS~~~a~~la~~Lk~l 552 (560)
+...... ......+..+...+.. ....++||||+|++.|+.++..|+..
T Consensus 313 ~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~ 362 (563)
T 3i5x_A 313 VISEKFA-------NSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNE 362 (563)
T ss_dssp EEESSTT-------HHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHH
T ss_pred EECchhH-------hhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 5544321 1111233444444443 45689999999999999999999875
No 28
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=5.7e-32 Score=277.56 Aligned_cols=242 Identities=23% Similarity=0.411 Sum_probs=205.9
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCC
Q 008605 275 CSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPT 354 (560)
Q Consensus 275 L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~Pt 354 (560)
|++.+.++|.++||..|+++|.++++.+++++++++.+|||+|||++|++|++.. +.++||++|+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~---------------~~~~liv~P~ 65 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL---------------GMKSLVVTPT 65 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH---------------TCCEEEECSS
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh---------------cCCEEEEeCC
Confidence 5789999999999999999999999999999999999999999999999998753 3469999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCC
Q 008605 355 AELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFN 434 (560)
Q Consensus 355 reLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~ 434 (560)
++|+.|+++.++++... .++.+..++|+.....+...+.. ++|+|+||++|..++....+.+.++++||+||||++.
T Consensus 66 ~~L~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~- 142 (337)
T 2z0m_A 66 RELTRQVASHIRDIGRY-MDTKVAEVYGGMPYKAQINRVRN-ADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMF- 142 (337)
T ss_dssp HHHHHHHHHHHHHHTTT-SCCCEEEECTTSCHHHHHHHHTT-CSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHH-
T ss_pred HHHHHHHHHHHHHHhhh-cCCcEEEEECCcchHHHHhhcCC-CCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhh-
Confidence 99999999999998763 56888999999888777666654 8999999999999988877788899999999999998
Q ss_pred CCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCCCCCCChhhhhh
Q 008605 435 DEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFL 514 (560)
Q Consensus 435 d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~ 514 (560)
+.++...+..++...+...|++++|||++..+...+..++.++..+... ....++.+.++.+....
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~----------- 208 (337)
T 2z0m_A 143 EMGFIDDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDDW----------- 208 (337)
T ss_dssp HTTCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECSSSS-----------
T ss_pred ccccHHHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeChHH-----------
Confidence 7789999999999999999999999999999988888888877665322 33445666666665421
Q ss_pred hHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHh
Q 008605 515 NKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGF 551 (560)
Q Consensus 515 ~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~ 551 (560)
....+.+.....+++||||+++++|+.+++.|+.
T Consensus 209 ---~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~ 242 (337)
T 2z0m_A 209 ---RSKVQALRENKDKGVIVFVRTRNRVAKLVRLFDN 242 (337)
T ss_dssp ---HHHHHHHHTCCCSSEEEECSCHHHHHHHHTTCTT
T ss_pred ---HHHHHHHHhCCCCcEEEEEcCHHHHHHHHHHhhh
Confidence 2233566667778999999999999999988864
No 29
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=4e-33 Score=276.21 Aligned_cols=207 Identities=25% Similarity=0.423 Sum_probs=173.6
Q ss_pred cccccc----CCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCC
Q 008605 268 KSFKEL----GCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTS 343 (560)
Q Consensus 268 ~sF~~l----~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~ 343 (560)
.+|+++ ++++.++++|.++||..|+++|.++|+.+++|+|+++++|||||||++|++|++..+.. ...
T Consensus 25 ~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~--------~~~ 96 (245)
T 3dkp_A 25 ATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQ--------PAN 96 (245)
T ss_dssp SSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCS--------CCS
T ss_pred cCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhh--------ccc
Confidence 578876 89999999999999999999999999999999999999999999999999999988743 224
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHH-HHhcCCCcEEEECHHHHHHHHHhc--cccCCC
Q 008605 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQL-ENLQEGVDVLIATPGRFMFLIKEG--ILQLIN 420 (560)
Q Consensus 344 ~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~-~~l~~~~~IlV~TP~~L~~ll~~~--~~~l~~ 420 (560)
.++++|||+||++|+.|+++.++++... .++++..++|+....... .....+++|+|+||++|.+++... .+.+.+
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~ 175 (245)
T 3dkp_A 97 KGFRALIISPTRELASQIHRELIKISEG-TGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLAS 175 (245)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHTTT-SCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcc-cCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCccccc
Confidence 5778999999999999999999998763 567777776654332221 122456899999999999999876 467889
Q ss_pred ccEEEEccccccCCC--CChHHHHHHHHhhC-CCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCC
Q 008605 421 LRCAILDEVDILFND--EDFEVALQSLISSS-PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGP 483 (560)
Q Consensus 421 l~~LViDEah~ll~d--~~f~~~l~~Il~~~-~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~ 483 (560)
+++|||||||+++++ .+|...+..++..+ +.+.|+++||||+|.++.+++..++.++..+...
T Consensus 176 ~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~ 241 (245)
T 3dkp_A 176 VEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIG 241 (245)
T ss_dssp CCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEEC
T ss_pred CcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeC
Confidence 999999999999831 57889999888765 4578999999999999999999999888776543
No 30
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.97 E-value=1.6e-31 Score=293.18 Aligned_cols=259 Identities=20% Similarity=0.306 Sum_probs=189.5
Q ss_pred cccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC--CcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCC
Q 008605 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG--KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (560)
Q Consensus 269 sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g--~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~ 346 (560)
.|...++++.+++.|.+.||..|+++|.++|+.++++ +++++++|||||||++|++|++..+... ..++
T Consensus 120 ~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~---------~~~~ 190 (508)
T 3fho_A 120 XXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDAS---------VPKP 190 (508)
T ss_dssp -------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTT---------CCSC
T ss_pred cccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhC---------CCCc
Confidence 3566678999999999999999999999999999998 9999999999999999999999876432 3467
Q ss_pred EEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEE
Q 008605 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (560)
Q Consensus 347 ~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LVi 426 (560)
++|||+|+++|+.|+++.+++++.. ..+.+....++..... ...+++|+|+||++|..++....+.+.++++|||
T Consensus 191 ~vLvl~P~~~L~~Q~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIi 265 (508)
T 3fho_A 191 QAICLAPSRELARQIMDVVTEMGKY-TEVKTAFGIKDSVPKG----AKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVL 265 (508)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHSTT-SSCCEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEE
T ss_pred eEEEEECcHHHHHHHHHHHHHhCCc-cCeeEEEEeCCccccc----ccCCCCEEEECHHHHHHHHHcCCccccCCCEEEE
Confidence 8999999999999999999998753 4455555555443222 2336899999999999999888888999999999
Q ss_pred ccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCCCCC
Q 008605 427 DEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506 (560)
Q Consensus 427 DEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~~~ 506 (560)
||||++..+.++...+..+...++...|++++|||++..+......++.++..+...........+.+.++.+...
T Consensus 266 DEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---- 341 (508)
T 3fho_A 266 DEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSE---- 341 (508)
T ss_dssp CCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--C----
T ss_pred echhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCch----
Confidence 9999999547899999999999999999999999999988888888888877766555555556677777766543
Q ss_pred CChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhh
Q 008605 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFF 552 (560)
Q Consensus 507 ~~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l 552 (560)
..+...+..++.....+++||||+++++|+.++..|+..
T Consensus 342 -------~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~ 380 (508)
T 3fho_A 342 -------EHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTAD 380 (508)
T ss_dssp -------HHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHHTTT
T ss_pred -------HHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhC
Confidence 367788888888777789999999999999999999764
No 31
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.97 E-value=2.3e-31 Score=283.17 Aligned_cols=240 Identities=14% Similarity=0.163 Sum_probs=185.3
Q ss_pred HHHHHHHH-CCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHH
Q 008605 278 YMIESLKR-QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAE 356 (560)
Q Consensus 278 ~ll~~L~~-~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~Ptre 356 (560)
++.+.+++ +|| .|+++|.++|+.++.|+|+++++|||||||++|++|++..+ ..++++|||+||++
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~------------~~~~~~lil~Pt~~ 75 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA------------RKGKKSALVFPTVT 75 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH------------TTTCCEEEEESSHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh------------cCCCEEEEEECCHH
Confidence 34455555 366 89999999999999999999999999999999999988765 23678999999999
Q ss_pred HHHHHHHHHHhhhcCCCCceEEEEeCCcch---HHHHHHhcCC-CcEEEECHHHHHHHHHhccccCCCccEEEEcccccc
Q 008605 357 LASQVLSNCRSLSKCGVPFRSMVVTGGFRQ---KTQLENLQEG-VDVLIATPGRFMFLIKEGILQLINLRCAILDEVDIL 432 (560)
Q Consensus 357 La~Qi~~~l~~l~~~~~~i~v~~l~gg~~~---~~~~~~l~~~-~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~l 432 (560)
|+.|+++.+++++. .++++..++|+... ..+...+..+ ++|+|+||++|.+++.. +.+.++++|||||||++
T Consensus 76 L~~q~~~~~~~~~~--~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~ 151 (414)
T 3oiy_A 76 LVKQTLERLQKLAD--EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAV 151 (414)
T ss_dssp HHHHHHHHHHHHCC--SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHH
T ss_pred HHHHHHHHHHHHcc--CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhh
Confidence 99999999999865 57899999999987 5566666665 99999999999988774 66779999999999876
Q ss_pred CC---------C-CChHHH-HHHHHhhCC-----------CCCcEEEEecc-CCHHHHHHHHHhCCCCeEEeCCCccccC
Q 008605 433 FN---------D-EDFEVA-LQSLISSSP-----------VTAQYLFVTAT-LPVEIYNKLVEVFPDCKVVMGPGMHRIS 489 (560)
Q Consensus 433 l~---------d-~~f~~~-l~~Il~~~~-----------~~~Q~IllSAT-lp~~v~~~l~~~~~~~~~i~~~~~~~~~ 489 (560)
.. + .+|... +..++..++ ...|++++||| +|..+...+...+.. +.........
T Consensus 152 ~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~---~~~~~~~~~~ 228 (414)
T 3oiy_A 152 LKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN---FTVGRLVSVA 228 (414)
T ss_dssp HHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS---CCSSCCCCCC
T ss_pred hhccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc---cCcCcccccc
Confidence 41 2 566666 788887765 78999999999 665543233222211 1111223445
Q ss_pred CCceeEEEEcCCCCCCCCChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhhc
Q 008605 490 PGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFFS 553 (560)
Q Consensus 490 ~~i~~~~v~~~~~~~~~~~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l~ 553 (560)
.++.+.++.+. +...|.++++.. .+++||||+++++|+.++..|+..+
T Consensus 229 ~~i~~~~~~~~---------------~~~~l~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~~ 276 (414)
T 3oiy_A 229 RNITHVRISSR---------------SKEKLVELLEIF-RDGILIFAQTEEEGKELYEYLKRFK 276 (414)
T ss_dssp CSEEEEEESSC---------------CHHHHHHHHHHH-CSSEEEEESSHHHHHHHHHHHHHTT
T ss_pred ccchheeeccC---------------HHHHHHHHHHHc-CCCEEEEECCHHHHHHHHHHHHHcC
Confidence 56777766542 345667777663 3799999999999999999998753
No 32
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.97 E-value=1.2e-29 Score=283.02 Aligned_cols=250 Identities=14% Similarity=0.166 Sum_probs=192.0
Q ss_pred cccccCCCHHHHHHHHH-CCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCE
Q 008605 269 SFKELGCSDYMIESLKR-QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (560)
Q Consensus 269 sF~~l~L~~~ll~~L~~-~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 347 (560)
.|.++++++.+.+.|++ +||..|+|+|.++|+.++.|+|+++++|||+|||++|++|++.. ..+
T Consensus 22 ~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~---------------~g~ 86 (591)
T 2v1x_A 22 NKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS---------------DGF 86 (591)
T ss_dssp CCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS---------------SSE
T ss_pred ccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc---------------CCc
Confidence 35568899999999998 69999999999999999999999999999999999999999741 348
Q ss_pred EEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHH---h---cCCCcEEEECHHHHH------HHHHhcc
Q 008605 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLEN---L---QEGVDVLIATPGRFM------FLIKEGI 415 (560)
Q Consensus 348 aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~---l---~~~~~IlV~TP~~L~------~ll~~~~ 415 (560)
+|||+|+++|+.|+++.++++ ++.+..+.|+......... + ...++|+|+||++|. +.+. ..
T Consensus 87 ~lVisP~~~L~~q~~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~-~~ 160 (591)
T 2v1x_A 87 TLVICPLISLMEDQLMVLKQL-----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLE-KA 160 (591)
T ss_dssp EEEECSCHHHHHHHHHHHHHH-----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHH-HH
T ss_pred EEEEeCHHHHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHH-hh
Confidence 999999999999999999887 4677888888776544322 2 356899999999884 2222 24
Q ss_pred ccCCCccEEEEccccccCCCCC--hHHHHHH--HHhhCCCCCcEEEEeccCCHHHHHHHHHhCCC--CeEEeCCCccccC
Q 008605 416 LQLINLRCAILDEVDILFNDED--FEVALQS--LISSSPVTAQYLFVTATLPVEIYNKLVEVFPD--CKVVMGPGMHRIS 489 (560)
Q Consensus 416 ~~l~~l~~LViDEah~ll~d~~--f~~~l~~--Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~--~~~i~~~~~~~~~ 489 (560)
..+..+++|||||||++. +++ |.+.+.. ++....+..|+++||||++..+...+..++.. +..+... ...
T Consensus 161 ~~~~~i~~iViDEAH~is-~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~---~~r 236 (591)
T 2v1x_A 161 YEARRFTRIAVDEVHCCS-QWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTAS---FNR 236 (591)
T ss_dssp HHTTCEEEEEEETGGGGS-TTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECC---CCC
T ss_pred hhccCCcEEEEECccccc-ccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecC---CCC
Confidence 467889999999999998 666 7776654 33333457999999999999988888887753 3333221 233
Q ss_pred CCceeEEEEcCCCCCCCCChhhhhhhHHHHHHHHHHh-CCCCcEEEEeCchHHHHHHHHHHHhhc
Q 008605 490 PGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEK-SPVSKTIVFCNKVCFSYKCNNLFGFFS 553 (560)
Q Consensus 490 ~~i~~~~v~~~~~~~~~~~~~~~~~~K~~~L~~lL~~-~~~~ktIIFcnS~~~a~~la~~Lk~l~ 553 (560)
+++...+...... ...++..|.+++.. +...++||||+|+++|+.++..|+..+
T Consensus 237 ~nl~~~v~~~~~~----------~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g 291 (591)
T 2v1x_A 237 PNLYYEVRQKPSN----------TEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLG 291 (591)
T ss_dssp TTEEEEEEECCSS----------HHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTT
T ss_pred cccEEEEEeCCCc----------HHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCC
Confidence 3444433332211 13566777888764 367899999999999999999998753
No 33
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.97 E-value=3.1e-29 Score=276.07 Aligned_cols=247 Identities=16% Similarity=0.214 Sum_probs=191.7
Q ss_pred ccccccCCCHHHHHHHHH-CCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCC
Q 008605 268 KSFKELGCSDYMIESLKR-QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~-~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~ 346 (560)
.+|++++|++.+.+.|++ +||..|+++|.++|+.+++|+|+++++|||+|||++|++|++.. ..
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~---------------~g 66 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL---------------NG 66 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS---------------SS
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh---------------CC
Confidence 369999999999999998 79999999999999999999999999999999999999999732 24
Q ss_pred EEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHH---Hh-cCCCcEEEECHHHHHHHHHhccccCCCcc
Q 008605 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLE---NL-QEGVDVLIATPGRFMFLIKEGILQLINLR 422 (560)
Q Consensus 347 ~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~---~l-~~~~~IlV~TP~~L~~ll~~~~~~l~~l~ 422 (560)
.+|||+|+++|+.|+.+.++.+ ++.+..+.++........ .+ ...++|+|+||++|........+...+++
T Consensus 67 ~~lvi~P~~aL~~q~~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~ 141 (523)
T 1oyw_A 67 LTVVVSPLISLMKDQVDQLQAN-----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPV 141 (523)
T ss_dssp EEEEECSCHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEE
T ss_pred CEEEECChHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCC
Confidence 7999999999999999999875 457778888776544322 22 34589999999999633222234457899
Q ss_pred EEEEccccccCCCCC--hHHHHHHH---HhhCCCCCcEEEEeccCCHHHHHHHHHhC--CCCeEEeCCCccccCCCceeE
Q 008605 423 CAILDEVDILFNDED--FEVALQSL---ISSSPVTAQYLFVTATLPVEIYNKLVEVF--PDCKVVMGPGMHRISPGLEEF 495 (560)
Q Consensus 423 ~LViDEah~ll~d~~--f~~~l~~I---l~~~~~~~Q~IllSATlp~~v~~~l~~~~--~~~~~i~~~~~~~~~~~i~~~ 495 (560)
+|||||||++. +++ |.+.+..+ .... ++.|++++|||++..+...+.+.+ .++.++... ...+++...
T Consensus 142 ~vViDEaH~i~-~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~---~~r~~l~~~ 216 (523)
T 1oyw_A 142 LLAVDEAHCIS-QWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQISS---FDRPNIRYM 216 (523)
T ss_dssp EEEESSGGGGC-TTSSCCCHHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECC---CCCTTEEEE
T ss_pred EEEEeCccccC-cCCCccHHHHHHHHHHHHhC-CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCC---CCCCceEEE
Confidence 99999999998 655 76666544 4444 468999999999998877776665 344444322 123344433
Q ss_pred EEEcCCCCCCCCChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhhc
Q 008605 496 LVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFFS 553 (560)
Q Consensus 496 ~v~~~~~~~~~~~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l~ 553 (560)
+... ..+...|.+++.....+++||||+|+++|+.+++.|+..+
T Consensus 217 v~~~--------------~~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g 260 (523)
T 1oyw_A 217 LMEK--------------FKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKG 260 (523)
T ss_dssp EEEC--------------SSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTT
T ss_pred EEeC--------------CCHHHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCC
Confidence 3321 2466788888888777899999999999999999998753
No 34
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.96 E-value=7.6e-30 Score=302.03 Aligned_cols=258 Identities=17% Similarity=0.192 Sum_probs=199.3
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCE
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 347 (560)
..|..+++++.+...+...++..|+++|.++|++++.|+++|++||||||||++|++|++..+. .+.+
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~------------~g~r 229 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK------------NKQR 229 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHH------------TTCE
T ss_pred CCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHh------------cCCe
Confidence 3677788887777777667777899999999999999999999999999999999999998873 2568
Q ss_pred EEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEc
Q 008605 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427 (560)
Q Consensus 348 aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViD 427 (560)
+||++||++|++|+++.+++++. .+.+++|+... ..+++|+|+||++|.+++.++...+.++++||||
T Consensus 230 vlvl~PtraLa~Q~~~~l~~~~~-----~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVID 297 (1108)
T 3l9o_A 230 VIYTSPIKALSNQKYRELLAEFG-----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFD 297 (1108)
T ss_dssp EEEEESSHHHHHHHHHHHHHHTS-----SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEE
T ss_pred EEEEcCcHHHHHHHHHHHHHHhC-----CccEEeCcccc-------CCCCCEEEeChHHHHHHHHcCccccccCCEEEEh
Confidence 99999999999999999998763 57778888763 3458999999999999999887778899999999
Q ss_pred cccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCH--HHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCCCC
Q 008605 428 EVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPV--EIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505 (560)
Q Consensus 428 Eah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~--~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~~ 505 (560)
|||+|. +.+|...++.++..++..+|+|+||||+|. ++..++......+..++...... ..+.++++....+...
T Consensus 298 EaH~l~-d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp--~pl~~~~~~~~~~~~~ 374 (1108)
T 3l9o_A 298 EVHYMR-DKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRP--TPLQHYLFPAHGDGIY 374 (1108)
T ss_dssp TGGGTT-SHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCS--SCEEEEEEETTSSCCE
T ss_pred hhhhcc-ccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCc--ccceEEEeecCCccee
Confidence 999999 788999999999999999999999999975 45566766666544444332222 2244444433221100
Q ss_pred C------CChhh-------------------------------------hhhhHHHHHHHHHHhCCCCcEEEEeCchHHH
Q 008605 506 D------KTPET-------------------------------------AFLNKKSALLQLIEKSPVSKTIVFCNKVCFS 542 (560)
Q Consensus 506 ~------~~~~~-------------------------------------~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a 542 (560)
. ..... ....++..+...+......++||||+++.+|
T Consensus 375 ~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~ 454 (1108)
T 3l9o_A 375 LVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDC 454 (1108)
T ss_dssp EEEETTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHH
T ss_pred eeeccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHH
Confidence 0 00000 0023444455556666678999999999999
Q ss_pred HHHHHHHHhh
Q 008605 543 YKCNNLFGFF 552 (560)
Q Consensus 543 ~~la~~Lk~l 552 (560)
+.++..|..+
T Consensus 455 e~la~~L~~~ 464 (1108)
T 3l9o_A 455 EELALKMSKL 464 (1108)
T ss_dssp HHHHHHTCSH
T ss_pred HHHHHHHHhc
Confidence 9999998764
No 35
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.96 E-value=2.9e-29 Score=286.26 Aligned_cols=258 Identities=19% Similarity=0.253 Sum_probs=196.7
Q ss_pred cccccCCCHHHHHHHHHCCCCCChHHHHHHHHH-HHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCE
Q 008605 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPP-VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (560)
Q Consensus 269 sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~-il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 347 (560)
+|++++|++.+.+.+.+.||..|+++|.++++. +..++++++++|||||||++|.+|+++.+... +.+
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-----------~~~ 70 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ-----------GGK 70 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH-----------CSE
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-----------CCE
Confidence 699999999999999999999999999999998 88999999999999999999999999887643 468
Q ss_pred EEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEc
Q 008605 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427 (560)
Q Consensus 348 aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViD 427 (560)
+||++|+++|+.|+++.++.+.. .++++..++|+...... ....++|+|+||++|..++......+.++++||||
T Consensus 71 ~l~i~P~raLa~q~~~~~~~l~~--~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiD 145 (720)
T 2zj8_A 71 AVYIVPLKALAEEKFQEFQDWEK--IGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVAD 145 (720)
T ss_dssp EEEECSSGGGHHHHHHHTGGGGG--GTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEE
T ss_pred EEEEcCcHHHHHHHHHHHHHHHh--cCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEE
Confidence 99999999999999999987765 36789999998765432 12358999999999999998876678899999999
Q ss_pred cccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCCCCCC
Q 008605 428 EVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507 (560)
Q Consensus 428 Eah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~~~~ 507 (560)
|||++. +.++...++.++..++...|+|++|||++.. ..+.+++....+ .... ... .+...+.. ...-....
T Consensus 146 E~H~l~-~~~r~~~~~~ll~~l~~~~~ii~lSATl~n~--~~~~~~l~~~~~-~~~~-rp~--~l~~~~~~-~~~~~~~~ 217 (720)
T 2zj8_A 146 EIHLIG-SRDRGATLEVILAHMLGKAQIIGLSATIGNP--EELAEWLNAELI-VSDW-RPV--KLRRGVFY-QGFVTWED 217 (720)
T ss_dssp TGGGGG-CTTTHHHHHHHHHHHBTTBEEEEEECCCSCH--HHHHHHTTEEEE-ECCC-CSS--EEEEEEEE-TTEEEETT
T ss_pred CCcccC-CCcccHHHHHHHHHhhcCCeEEEEcCCcCCH--HHHHHHhCCccc-CCCC-CCC--cceEEEEe-CCeeeccc
Confidence 999998 7789999999998887789999999999752 446677753322 2111 111 12222111 00000000
Q ss_pred ChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhh
Q 008605 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFF 552 (560)
Q Consensus 508 ~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l 552 (560)
........+...+.+++.. .+++||||+++++|+.++..|...
T Consensus 218 ~~~~~~~~~~~~~~~~~~~--~~~~LVF~~sr~~~~~~a~~L~~~ 260 (720)
T 2zj8_A 218 GSIDRFSSWEELVYDAIRK--KKGALIFVNMRRKAERVALELSKK 260 (720)
T ss_dssp SCEEECSSTTHHHHHHHHT--TCCEEEECSCHHHHHHHHHHHHHH
T ss_pred cchhhhhHHHHHHHHHHhC--CCCEEEEecCHHHHHHHHHHHHHH
Confidence 0000012344556666553 479999999999999999999864
No 36
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.96 E-value=1.1e-28 Score=281.08 Aligned_cols=258 Identities=17% Similarity=0.199 Sum_probs=196.0
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHH-HHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCC
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPP-VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~-il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~ 346 (560)
.+|++++|++.+.+.+.+.||..|+++|.++++. +..+++++++||||||||++|.+++++.+... +.
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-----------~~ 76 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN-----------GG 76 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-----------CS
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC-----------CC
Confidence 6799999999999999999999999999999999 78899999999999999999999999887532 46
Q ss_pred EEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEE
Q 008605 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (560)
Q Consensus 347 ~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LVi 426 (560)
++||++|+++|+.|+++.++.+.. .++++..++|+...... .+ ..++|+|+||++|..++......+.++++|||
T Consensus 77 ~il~i~P~r~La~q~~~~~~~~~~--~g~~v~~~~G~~~~~~~--~~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIi 151 (715)
T 2va8_A 77 KAIYVTPLRALTNEKYLTFKDWEL--IGFKVAMTSGDYDTDDA--WL-KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVL 151 (715)
T ss_dssp EEEEECSCHHHHHHHHHHHGGGGG--GTCCEEECCSCSSSCCG--GG-GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEE
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhc--CCCEEEEEeCCCCCchh--hc-CCCCEEEEcHHHHHHHHhCChhHhhccCEEEE
Confidence 899999999999999999976654 36788888988765432 12 35899999999999999887767899999999
Q ss_pred ccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCC----
Q 008605 427 DEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGD---- 502 (560)
Q Consensus 427 DEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~---- 502 (560)
||||++. +..+...++.++..++ +.|+|++|||++.. +.+.+++....+ .... ... .+...++.....
T Consensus 152 DE~H~l~-~~~~~~~l~~i~~~~~-~~~ii~lSATl~n~--~~~~~~l~~~~~-~~~~-r~~--~l~~~~~~~~~~~~~~ 223 (715)
T 2va8_A 152 DELHYLN-DPERGPVVESVTIRAK-RRNLLALSATISNY--KQIAKWLGAEPV-ATNW-RPV--PLIEGVIYPERKKKEY 223 (715)
T ss_dssp CSGGGGG-CTTTHHHHHHHHHHHH-TSEEEEEESCCTTH--HHHHHHHTCEEE-ECCC-CSS--CEEEEEEEECSSTTEE
T ss_pred echhhcC-CcccchHHHHHHHhcc-cCcEEEEcCCCCCH--HHHHHHhCCCcc-CCCC-CCC--CceEEEEecCCcccce
Confidence 9999988 7789999998887776 89999999999852 345666654322 2111 111 122222111100
Q ss_pred -----CCCCCChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhh
Q 008605 503 -----QESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFF 552 (560)
Q Consensus 503 -----~~~~~~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l 552 (560)
+... ........+...+.+++. ..+++||||+++++|+.++..|...
T Consensus 224 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~ 275 (715)
T 2va8_A 224 NVIFKDNTT-KKVHGDDAIIAYTLDSLS--KNGQVLVFRNSRKMAESTALKIANY 275 (715)
T ss_dssp EEEETTSCE-EEEESSSHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHT
T ss_pred eeecCcchh-hhcccchHHHHHHHHHHh--cCCCEEEEECCHHHHHHHHHHHHHH
Confidence 0000 000001234555566554 4589999999999999999999874
No 37
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.96 E-value=8.6e-29 Score=292.96 Aligned_cols=233 Identities=14% Similarity=0.168 Sum_probs=185.3
Q ss_pred HCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHH
Q 008605 285 RQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (560)
Q Consensus 285 ~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~ 364 (560)
.+|| .|+++|.++|+.++.|+|++++||||||||++|+++++..+ ..++++|||+||++||.|+++.
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~------------~~~~~~Lil~PtreLa~Q~~~~ 140 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA------------RKGKKSALVFPTVTLVKQTLER 140 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH------------TTTCCEEEEESSHHHHHHHHHH
T ss_pred hcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH------------hcCCeEEEEechHHHHHHHHHH
Confidence 4688 69999999999999999999999999999998888887765 2367899999999999999999
Q ss_pred HHhhhcCCCCceEEEEeCCcch---HHHHHHhcCC-CcEEEECHHHHHHHHHhccccCCCccEEEEccccccCC------
Q 008605 365 CRSLSKCGVPFRSMVVTGGFRQ---KTQLENLQEG-VDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFN------ 434 (560)
Q Consensus 365 l~~l~~~~~~i~v~~l~gg~~~---~~~~~~l~~~-~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~------ 434 (560)
+++++ ..++++..++|+... ..+...+..+ ++|+|+||++|.+++.. +.+.++++|||||||++..
T Consensus 141 l~~l~--~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~D 216 (1104)
T 4ddu_A 141 LQKLA--DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNID 216 (1104)
T ss_dssp HHTTS--CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHH
T ss_pred HHHhh--CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccch
Confidence 99976 468899999999987 6667777766 99999999999888774 6678999999999987662
Q ss_pred ---C-CChHHH-HHHHHhhCC-----------CCCcEEEEecc-CCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEE
Q 008605 435 ---D-EDFEVA-LQSLISSSP-----------VTAQYLFVTAT-LPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLV 497 (560)
Q Consensus 435 ---d-~~f~~~-l~~Il~~~~-----------~~~Q~IllSAT-lp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v 497 (560)
+ ++|... +..+++.++ ...|+++|||| .|..+...+...+... ..........++.+.++
T Consensus 217 r~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~i---~v~~~~~~~~~i~~~~~ 293 (1104)
T 4ddu_A 217 TLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNF---TVGRLVSVARNITHVRI 293 (1104)
T ss_dssp HHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTCC---CCCBCCCCCCCEEEEEE
T ss_pred hhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcceeE---EeccCCCCcCCceeEEE
Confidence 2 677777 888888776 78999999999 5655443333322221 11122345566777776
Q ss_pred EcCCCCCCCCChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhhc
Q 008605 498 DCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFFS 553 (560)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l~ 553 (560)
.+. +...|.+++... .+++||||++++.|+.++..|+..+
T Consensus 294 ~~~---------------k~~~L~~ll~~~-~~~~LVF~~s~~~a~~l~~~L~~~g 333 (1104)
T 4ddu_A 294 SSR---------------SKEKLVELLEIF-RDGILIFAQTEEEGKELYEYLKRFK 333 (1104)
T ss_dssp SCC---------------CHHHHHHHHHHH-CSSEEEEESSSHHHHHHHHHHHHTT
T ss_pred ecC---------------HHHHHHHHHHhc-CCCEEEEECcHHHHHHHHHHHHhCC
Confidence 652 345667777663 3799999999999999999998764
No 38
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.96 E-value=7.1e-29 Score=282.21 Aligned_cols=257 Identities=18% Similarity=0.224 Sum_probs=191.6
Q ss_pred cccccC--CCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCC
Q 008605 269 SFKELG--CSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (560)
Q Consensus 269 sF~~l~--L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~ 346 (560)
+|++|+ |++.+.+.|.++||..|+++|.++++.++.++++++++|||||||++|.+|++..+.. +.
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~------------~~ 69 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK------------GG 69 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT------------TC
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh------------CC
Confidence 689999 9999999999999999999999999999999999999999999999999999987642 45
Q ss_pred EEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEE
Q 008605 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (560)
Q Consensus 347 ~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LVi 426 (560)
++||++|+++|+.|+++.++.+.. .++++..++|+...... ....++|+|+||++|..++.+....+.++++|||
T Consensus 70 ~~l~i~P~r~La~q~~~~~~~~~~--~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIi 144 (702)
T 2p6r_A 70 KSLYVVPLRALAGEKYESFKKWEK--IGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVV 144 (702)
T ss_dssp CEEEEESSHHHHHHHHHHHTTTTT--TTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEE
T ss_pred cEEEEeCcHHHHHHHHHHHHHHHh--cCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEE
Confidence 799999999999999999976654 36889999998765432 1236899999999999999887666889999999
Q ss_pred ccccccCCCCChHHHHHHHHhhC---CCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCC
Q 008605 427 DEVDILFNDEDFEVALQSLISSS---PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503 (560)
Q Consensus 427 DEah~ll~d~~f~~~l~~Il~~~---~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~ 503 (560)
||||++. +.++...++.++..+ .+..|+|++|||++. ...+.+++....+ .... . +..+...+.. ....
T Consensus 145 DE~H~l~-~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n--~~~~~~~l~~~~~-~~~~-r--~~~l~~~~~~-~~~~ 216 (702)
T 2p6r_A 145 DEIHLLD-SEKRGATLEILVTKMRRMNKALRVIGLSATAPN--VTEIAEWLDADYY-VSDW-R--PVPLVEGVLC-EGTL 216 (702)
T ss_dssp TTGGGGG-CTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT--HHHHHHHTTCEEE-ECCC-C--SSCEEEEEEC-SSEE
T ss_pred eeeeecC-CCCcccHHHHHHHHHHhcCcCceEEEECCCcCC--HHHHHHHhCCCcc-cCCC-C--CccceEEEee-CCee
Confidence 9999998 678888888776655 568999999999985 2456677764332 2221 1 1112222211 1000
Q ss_pred C--CCCChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhh
Q 008605 504 E--SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFF 552 (560)
Q Consensus 504 ~--~~~~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l 552 (560)
. ...........+...+.+.+.. .+++||||+++++|+.++..|...
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~LVF~~s~~~~~~~a~~L~~~ 265 (702)
T 2p6r_A 217 ELFDGAFSTSRRVKFEELVEECVAE--NGGVLVFESTRRGAEKTAVKLSAI 265 (702)
T ss_dssp EEEETTEEEEEECCHHHHHHHHHHT--TCCEEEECSSHHHHHHHHHHHHHH
T ss_pred eccCcchhhhhhhhHHHHHHHHHhc--CCCEEEEcCCHHHHHHHHHHHHHH
Confidence 0 0000000001155666666653 479999999999999999999864
No 39
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.95 E-value=1.4e-26 Score=262.26 Aligned_cols=176 Identities=20% Similarity=0.273 Sum_probs=142.1
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHH
Q 008605 280 IESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELAS 359 (560)
Q Consensus 280 l~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~ 359 (560)
..+|..+||..|+++|.++++.++.|+|+|+++|||+|||++|++|+++.+.... ...+.++|||+||++|+.
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~-------~~~~~~~lvl~Pt~~L~~ 75 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP-------QGQKGKVVFFANQIPVYE 75 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC-------TTCCCCEEEECSSHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCc-------cCCCCeEEEEECCHHHHH
Confidence 3567788999999999999999999999999999999999999999998876531 123468999999999999
Q ss_pred HHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccc-cCCCccEEEEccccccCCCCCh
Q 008605 360 QVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGIL-QLINLRCAILDEVDILFNDEDF 438 (560)
Q Consensus 360 Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~-~l~~l~~LViDEah~ll~d~~f 438 (560)
|+.+.+++++.. .++++..++|+.....+...+..+++|+|+||++|.+.+..+.+ .+.++++|||||||++.+...+
T Consensus 76 Q~~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~ 154 (696)
T 2ykg_A 76 QNKSVFSKYFER-HGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPY 154 (696)
T ss_dssp HHHHHHHHHTTT-TTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHH
T ss_pred HHHHHHHHHhcc-CCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccH
Confidence 999999998753 57899999999876555555556799999999999999988766 7889999999999999854445
Q ss_pred HHHHHHHHhh-----CCCCCcEEEEeccCC
Q 008605 439 EVALQSLISS-----SPVTAQYLFVTATLP 463 (560)
Q Consensus 439 ~~~l~~Il~~-----~~~~~Q~IllSATlp 463 (560)
...+..++.. .....|+++||||+.
T Consensus 155 ~~i~~~~l~~~~~~~~~~~~~il~LTATp~ 184 (696)
T 2ykg_A 155 NMIMFNYLDQKLGGSSGPLPQVIGLTASVG 184 (696)
T ss_dssp HHHHHHHHHHHHTTCCSCCCEEEEEESCCC
T ss_pred HHHHHHHHHHhhcccCCCCCeEEEEeCccc
Confidence 5555444432 246789999999997
No 40
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.95 E-value=2.7e-26 Score=251.17 Aligned_cols=167 Identities=19% Similarity=0.273 Sum_probs=139.6
Q ss_pred CChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhh
Q 008605 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (560)
Q Consensus 290 ~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~ 369 (560)
.|+++|.++++.++.|+++++++|||+|||++|++|+++.+... ....++++|||+||++|+.|+++.+++++
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~-------~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 76 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKF-------PCGQKGKVVFFANQIPVYEQQATVFSRYF 76 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTC-------CSSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhc-------ccCCCCEEEEEeCCHHHHHHHHHHHHHHh
Confidence 79999999999999999999999999999999999999888653 11337789999999999999999999987
Q ss_pred cCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccc-cCCCccEEEEccccccCCCCChHHHHHHHHhh
Q 008605 370 KCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGIL-QLINLRCAILDEVDILFNDEDFEVALQSLISS 448 (560)
Q Consensus 370 ~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~-~l~~l~~LViDEah~ll~d~~f~~~l~~Il~~ 448 (560)
.. .++++..++|+.....+...+..+++|+|+||++|..++..+.+ .+.++++|||||||++.+...+...+..++..
T Consensus 77 ~~-~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~ 155 (555)
T 3tbk_A 77 ER-LGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDH 155 (555)
T ss_dssp HT-TTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHH
T ss_pred cc-CCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHh
Confidence 64 57899999999977666666666799999999999999988766 78899999999999999443455555444443
Q ss_pred C-----CCCCcEEEEeccCCH
Q 008605 449 S-----PVTAQYLFVTATLPV 464 (560)
Q Consensus 449 ~-----~~~~Q~IllSATlp~ 464 (560)
. ....|++++|||++.
T Consensus 156 ~~~~~~~~~~~~l~lSAT~~~ 176 (555)
T 3tbk_A 156 KLGESRDPLPQVVGLTASVGV 176 (555)
T ss_dssp HTSSCCSCCCEEEEEESCCCC
T ss_pred hhccccCCCCeEEEEecCccc
Confidence 2 256799999999953
No 41
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.95 E-value=1.9e-26 Score=252.84 Aligned_cols=168 Identities=19% Similarity=0.277 Sum_probs=132.2
Q ss_pred CCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Q 008605 287 NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (560)
Q Consensus 287 g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~ 366 (560)
+...|+++|.++++.++.|+|+++++|||+|||++|++|+++.+... ....++++|||+||++|+.|+++.++
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~-------~~~~~~~~lil~P~~~L~~q~~~~~~ 76 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNM-------PAGRKAKVVFLATKVPVYEQQKNVFK 76 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTC-------CSSCCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhC-------cccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 45589999999999999999999999999999999999999888643 12237789999999999999999999
Q ss_pred hhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccc-cCCCccEEEEccccccCCCCC-hHHHHHH
Q 008605 367 SLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGIL-QLINLRCAILDEVDILFNDED-FEVALQS 444 (560)
Q Consensus 367 ~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~-~l~~l~~LViDEah~ll~d~~-f~~~l~~ 444 (560)
+++.. .++++..++|+.....+...+..+++|+|+||++|.+++..+.+ .+.++++|||||||++. +.+ +...+..
T Consensus 77 ~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~-~~~~~~~~~~~ 154 (556)
T 4a2p_A 77 HHFER-QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTT-GNHPYNVLMTR 154 (556)
T ss_dssp HHHGG-GTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCS-TTSHHHHHHHH
T ss_pred HHhcc-cCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccC-CcchHHHHHHH
Confidence 98763 47889999999877666666666799999999999999988777 78999999999999998 444 3333333
Q ss_pred HHhh----CCCCCcEEEEeccCC
Q 008605 445 LISS----SPVTAQYLFVTATLP 463 (560)
Q Consensus 445 Il~~----~~~~~Q~IllSATlp 463 (560)
++.. ..+..|+++||||++
T Consensus 155 ~~~~~~~~~~~~~~~l~lSAT~~ 177 (556)
T 4a2p_A 155 YLEQKFNSASQLPQILGLTASVG 177 (556)
T ss_dssp HHHHHHCC---CCEEEEEESCCC
T ss_pred HHHhhhcccCCCCeEEEEeCCcc
Confidence 3332 135689999999995
No 42
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.94 E-value=8.2e-28 Score=284.16 Aligned_cols=232 Identities=18% Similarity=0.149 Sum_probs=178.5
Q ss_pred HHH-HHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHH
Q 008605 281 ESL-KRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELAS 359 (560)
Q Consensus 281 ~~L-~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~ 359 (560)
+.+ ..+||. | ++|.++|+.++.|+|++++||||||||+ |.+|++..+.. .++++|||+||++||.
T Consensus 48 ~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~-----------~~~~~lil~PtreLa~ 113 (1054)
T 1gku_B 48 EFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL-----------KGKRCYVIFPTSLLVI 113 (1054)
T ss_dssp HHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT-----------TSCCEEEEESCHHHHH
T ss_pred HHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh-----------cCCeEEEEeccHHHHH
Confidence 344 347999 9 9999999999999999999999999998 99999887753 3678999999999999
Q ss_pred HHHHHHHhhhcCCCCc----eEEEEeCCcchHHH---HHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEcccccc
Q 008605 360 QVLSNCRSLSKCGVPF----RSMVVTGGFRQKTQ---LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDIL 432 (560)
Q Consensus 360 Qi~~~l~~l~~~~~~i----~v~~l~gg~~~~~~---~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~l 432 (560)
|+++.++.++.. .++ ++..++|+.....+ ...+.. ++|+|+||++|.+++.+ +.++++|||||||+|
T Consensus 114 Q~~~~l~~l~~~-~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~ 187 (1054)
T 1gku_B 114 QAAETIRKYAEK-AGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAI 187 (1054)
T ss_dssp HHHHHHHHHHTT-TCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHH
T ss_pred HHHHHHHHHHhh-cCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhh
Confidence 999999999864 456 89999999887663 445556 99999999999987765 679999999999999
Q ss_pred CCCCChHHHHHHHHhhC-----------CCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCC
Q 008605 433 FNDEDFEVALQSLISSS-----------PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSG 501 (560)
Q Consensus 433 l~d~~f~~~l~~Il~~~-----------~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~ 501 (560)
+ + |...++.++..+ +...|++++|||++.. ......++.++..+..........++.+.++. .
T Consensus 188 l-~--~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~~--~ 261 (1054)
T 1gku_B 188 L-K--ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAVN--D 261 (1054)
T ss_dssp H-T--STHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEES--C
T ss_pred h-h--ccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEec--h
Confidence 9 4 677788887776 3568999999999865 32121222111112222233444566766662 1
Q ss_pred CCCCCCChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhh
Q 008605 502 DQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFF 552 (560)
Q Consensus 502 ~~~~~~~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l 552 (560)
.+...|.++++.. .+++||||+++++|+.+++.|+..
T Consensus 262 -------------~k~~~L~~ll~~~-~~~~LVF~~t~~~a~~l~~~L~~~ 298 (1054)
T 1gku_B 262 -------------ESISTLSSILEKL-GTGGIIYARTGEEAEEIYESLKNK 298 (1054)
T ss_dssp -------------CCTTTTHHHHTTS-CSCEEEEESSHHHHHHHHHTTTTS
T ss_pred -------------hHHHHHHHHHhhc-CCCEEEEEcCHHHHHHHHHHHhhc
Confidence 2345667777665 478999999999999999999764
No 43
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.3e-26 Score=270.06 Aligned_cols=240 Identities=18% Similarity=0.238 Sum_probs=180.6
Q ss_pred HCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHH
Q 008605 285 RQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (560)
Q Consensus 285 ~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~ 364 (560)
.++|. |+++|.++++.++.|+++++++|||||||++|.++++..+. .+.++||++||++|++|+++.
T Consensus 82 ~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~------------~g~rvL~l~PtkaLa~Q~~~~ 148 (1010)
T 2xgj_A 82 TYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK------------NKQRVIYTSPIKALSNQKYRE 148 (1010)
T ss_dssp CCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH------------TTCEEEEEESSHHHHHHHHHH
T ss_pred hCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc------------cCCeEEEECChHHHHHHHHHH
Confidence 45775 99999999999999999999999999999999999987763 256899999999999999999
Q ss_pred HHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCCChHHHHHH
Q 008605 365 CRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444 (560)
Q Consensus 365 l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~l~~ 444 (560)
+.+++. .+.+++|+.... ..++|+|+||++|..++.++...+.++++|||||||+|. +.++...++.
T Consensus 149 l~~~~~-----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~-d~~rg~~~e~ 215 (1010)
T 2xgj_A 149 LLAEFG-----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMR-DKERGVVWEE 215 (1010)
T ss_dssp HHHHHS-----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGG-CTTTHHHHHH
T ss_pred HHHHhC-----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhc-ccchhHHHHH
Confidence 998764 677888887653 358999999999999998877788999999999999999 7889999999
Q ss_pred HHhhCCCCCcEEEEeccCCHH--HHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCCC------CCCChhhhh---
Q 008605 445 LISSSPVTAQYLFVTATLPVE--IYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE------SDKTPETAF--- 513 (560)
Q Consensus 445 Il~~~~~~~Q~IllSATlp~~--v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~------~~~~~~~~~--- 513 (560)
++..++..+|+|++|||+|.. +..++.........++..... +..+.++++....+.. ........+
T Consensus 216 il~~l~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~r--p~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (1010)
T 2xgj_A 216 TIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR--PTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKA 293 (1010)
T ss_dssp HHHHSCTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCC--SSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHH
T ss_pred HHHhcCCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC--cccceEEEEecCCcceeeeeccccccchHHHHHH
Confidence 999999999999999999864 334444444433333322222 2235555544221100 000000000
Q ss_pred ----------------------------------hhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhh
Q 008605 514 ----------------------------------LNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFF 552 (560)
Q Consensus 514 ----------------------------------~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l 552 (560)
...+..|...+......++||||+++..|+.++..|..+
T Consensus 294 ~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~ 366 (1010)
T 2xgj_A 294 MASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKL 366 (1010)
T ss_dssp HHTCC------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTS
T ss_pred HHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhC
Confidence 123344555555555679999999999999999999764
No 44
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.94 E-value=8.5e-26 Score=276.49 Aligned_cols=254 Identities=19% Similarity=0.214 Sum_probs=183.0
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHHc-CCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcC
Q 008605 275 CSDYMIESLKRQNFLRPSQIQAMAFPPVVE-GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAP 353 (560)
Q Consensus 275 L~~~ll~~L~~~g~~~pt~iQ~~aip~il~-g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~P 353 (560)
|.+...++|...+|..++|+|.++|+.++. ++|++++||||||||++|.+|+++.+.+. .+.++|||+|
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~----------~~~kavyi~P 980 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS----------SEGRCVYITP 980 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC----------TTCCEEEECS
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC----------CCCEEEEEcC
Confidence 567788888888999999999999999975 56899999999999999999999998753 3567999999
Q ss_pred CHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhc--cccCCCccEEEEccccc
Q 008605 354 TAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG--ILQLINLRCAILDEVDI 431 (560)
Q Consensus 354 treLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~--~~~l~~l~~LViDEah~ 431 (560)
+++||+|+++.+++......+++|..++|+....... ..+++|+|+|||+|..++++. ...+.++++||+||+|+
T Consensus 981 ~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~~---~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~ 1057 (1724)
T 4f92_B 981 MEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKL---LGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHL 1057 (1724)
T ss_dssp CHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHHH---HHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGG
T ss_pred hHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchhh---cCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhh
Confidence 9999999999998765434678999999987654332 234899999999998888653 23478899999999998
Q ss_pred cCCCCChHHHHHHHH-------hhCCCCCcEEEEeccCCHHHHHHHHHhCCC---CeEEeCCCccccCCCceeEEEEcCC
Q 008605 432 LFNDEDFEVALQSLI-------SSSPVTAQYLFVTATLPVEIYNKLVEVFPD---CKVVMGPGMHRISPGLEEFLVDCSG 501 (560)
Q Consensus 432 ll~d~~f~~~l~~Il-------~~~~~~~Q~IllSATlp~~v~~~l~~~~~~---~~~i~~~~~~~~~~~i~~~~v~~~~ 501 (560)
+. + ..+..++.++ ...+.++|+|+||||++.. +.+.+|+.. ..+.+..... +..++.++.....
T Consensus 1058 l~-d-~rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~--~dla~WL~~~~~~~~~~~~~~R--PvpL~~~i~~~~~ 1131 (1724)
T 4f92_B 1058 IG-G-ENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNA--KDVAHWLGCSATSTFNFHPNVR--PVPLELHIQGFNI 1131 (1724)
T ss_dssp GG-S-TTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTH--HHHHHHHTCCSTTEEECCGGGC--SSCEEEEEEEECC
T ss_pred cC-C-CCCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCH--HHHHHHhCCCCCCeEEeCCCCC--CCCeEEEEEeccC
Confidence 87 4 3555555444 3456789999999999853 345566632 2223322222 2234444443332
Q ss_pred CCCCCCChhhhhhhHHHHHHHHHH-hCCCCcEEEEeCchHHHHHHHHHHHhh
Q 008605 502 DQESDKTPETAFLNKKSALLQLIE-KSPVSKTIVFCNKVCFSYKCNNLFGFF 552 (560)
Q Consensus 502 ~~~~~~~~~~~~~~K~~~L~~lL~-~~~~~ktIIFcnS~~~a~~la~~Lk~l 552 (560)
. .....+......+...+. ....+++||||+|++.|+.+|..|...
T Consensus 1132 ~-----~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~ 1178 (1724)
T 4f92_B 1132 S-----HTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTT 1178 (1724)
T ss_dssp C-----SHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHH
T ss_pred C-----CchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHH
Confidence 1 111111222233333443 346789999999999999999888654
No 45
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.94 E-value=1e-25 Score=259.83 Aligned_cols=171 Identities=19% Similarity=0.266 Sum_probs=136.2
Q ss_pred HCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHH
Q 008605 285 RQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (560)
Q Consensus 285 ~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~ 364 (560)
.+|+..|+++|.++++.++.|+|+|+++|||+|||++|++|++..+... ....++++|||+||++|+.|+++.
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~-------~~~~~~~~Lvl~Pt~~L~~Q~~~~ 315 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNM-------PAGRKAKVVFLATKVPVYEQQKNV 315 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTC-------CSSCCCCEEEECSSHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhc-------cccCCCeEEEEeCCHHHHHHHHHH
Confidence 3578899999999999999999999999999999999999999888653 113367899999999999999999
Q ss_pred HHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccc-cCCCccEEEEccccccCCCCChHHHHH
Q 008605 365 CRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGIL-QLINLRCAILDEVDILFNDEDFEVALQ 443 (560)
Q Consensus 365 l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~-~l~~l~~LViDEah~ll~d~~f~~~l~ 443 (560)
+++++.. .++++..++|+.....+...+..+++|+|+||++|...+..+.+ .+.++++|||||||++.....+...+.
T Consensus 316 ~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~ 394 (797)
T 4a2q_A 316 FKHHFER-QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMT 394 (797)
T ss_dssp HHHHHGG-GTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHH
T ss_pred HHHhccc-CCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHH
Confidence 9998763 47899999999977766666767899999999999999988776 788999999999999994434555444
Q ss_pred HHHhh----CCCCCcEEEEeccCC
Q 008605 444 SLISS----SPVTAQYLFVTATLP 463 (560)
Q Consensus 444 ~Il~~----~~~~~Q~IllSATlp 463 (560)
.++.. .....|++++|||++
T Consensus 395 ~~~~~~~~~~~~~~~~l~lSATp~ 418 (797)
T 4a2q_A 395 RYLEQKFNSASQLPQILGLTASVG 418 (797)
T ss_dssp HHHHHHHTTCCCCCEEEEEESCCC
T ss_pred HHHHHhhccCCCCCeEEEEcCCcc
Confidence 44433 245689999999995
No 46
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.94 E-value=9.2e-26 Score=264.90 Aligned_cols=156 Identities=20% Similarity=0.291 Sum_probs=137.4
Q ss_pred CCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHH
Q 008605 286 QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (560)
Q Consensus 286 ~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l 365 (560)
++| .|+++|.++|+.++.|+++++++|||||||++|++++...+. .+.++||++|+++|+.|+++.+
T Consensus 36 ~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~------------~g~~vlvl~PtraLa~Q~~~~l 102 (997)
T 4a4z_A 36 WPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR------------NMTKTIYTSPIKALSNQKFRDF 102 (997)
T ss_dssp CSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH------------TTCEEEEEESCGGGHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHh------------cCCeEEEEeCCHHHHHHHHHHH
Confidence 466 489999999999999999999999999999999999887653 2568999999999999999999
Q ss_pred HhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCCChHHHHHHH
Q 008605 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445 (560)
Q Consensus 366 ~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~l~~I 445 (560)
++++ .++.+..++|+.... ..++|+|+||++|..++......+.++++|||||||++. ++++...++.+
T Consensus 103 ~~~~---~~~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~-d~~~g~~~e~i 171 (997)
T 4a4z_A 103 KETF---DDVNIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVN-DQDRGVVWEEV 171 (997)
T ss_dssp HTTC-----CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCC-TTCTTCCHHHH
T ss_pred HHHc---CCCeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECccccc-ccchHHHHHHH
Confidence 9875 257889999987643 348999999999999998877788999999999999999 88899999999
Q ss_pred HhhCCCCCcEEEEeccCCHH
Q 008605 446 ISSSPVTAQYLFVTATLPVE 465 (560)
Q Consensus 446 l~~~~~~~Q~IllSATlp~~ 465 (560)
+..++...|+|++|||++..
T Consensus 172 i~~l~~~v~iIlLSAT~~n~ 191 (997)
T 4a4z_A 172 IIMLPQHVKFILLSATVPNT 191 (997)
T ss_dssp HHHSCTTCEEEEEECCCTTH
T ss_pred HHhcccCCCEEEEcCCCCCh
Confidence 99999999999999999754
No 47
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.94 E-value=3e-26 Score=280.46 Aligned_cols=250 Identities=16% Similarity=0.212 Sum_probs=178.9
Q ss_pred CCCCChHHHHHHHHHHH-cCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHH
Q 008605 287 NFLRPSQIQAMAFPPVV-EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (560)
Q Consensus 287 g~~~pt~iQ~~aip~il-~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l 365 (560)
||.+++++|.+++|.++ .++|++++||||||||++|.+++++.+.+.... .......+.++|||+|+++||+|+++.+
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~-~~~~~~~~~k~lyiaP~kALa~e~~~~l 154 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINM-DGTINVDDFKIIYIAPMRSLVQEMVGSF 154 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCT-TSSCCTTSCEEEEECSSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccc-cccccCCCCEEEEECCHHHHHHHHHHHH
Confidence 89999999999999977 578999999999999999999999998754211 0112345789999999999999999999
Q ss_pred HhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhcc--ccCCCccEEEEccccccCCCCChHHHHH
Q 008605 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGI--LQLINLRCAILDEVDILFNDEDFEVALQ 443 (560)
Q Consensus 366 ~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~--~~l~~l~~LViDEah~ll~d~~f~~~l~ 443 (560)
++.... .+++|..++|+.....+ ...+++|+|+|||++..++++.. ..+.++++|||||+|.+. + .++..++
T Consensus 155 ~~~~~~-~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~-d-~RG~~lE 228 (1724)
T 4f92_B 155 GKRLAT-YGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLH-D-DRGPVLE 228 (1724)
T ss_dssp HHHHTT-TTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGG-S-TTHHHHH
T ss_pred HHHHhh-CCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcC-C-ccHHHHH
Confidence 887653 67899999999865432 12458999999999977766532 247889999999999886 4 5666666
Q ss_pred HHHh-------hCCCCCcEEEEeccCCHHHHHHHHHhCCCC----eEEeCCCccccCCCceeEEEEcCCCCCCCCChhhh
Q 008605 444 SLIS-------SSPVTAQYLFVTATLPVEIYNKLVEVFPDC----KVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETA 512 (560)
Q Consensus 444 ~Il~-------~~~~~~Q~IllSATlp~~v~~~l~~~~~~~----~~i~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~ 512 (560)
.++. ..+...|+|++|||+|+. +.+.+|+... ...+..... +..+++.++..... .....
T Consensus 229 ~~l~rl~~~~~~~~~~~riI~LSATl~N~--~dvA~wL~~~~~~~~~~~~~~~R--PvpL~~~~~~~~~~-----~~~~~ 299 (1724)
T 4f92_B 229 ALVARAIRNIEMTQEDVRLIGLSATLPNY--EDVATFLRVDPAKGLFYFDNSFR--PVPLEQTYVGITEK-----KAIKR 299 (1724)
T ss_dssp HHHHHHHHHHHHHTCCCEEEEEECSCTTH--HHHHHHTTCCHHHHEEECCGGGC--SSCEEEECCEECCC-----CHHHH
T ss_pred HHHHHHHHHHHhCCCCCcEEEEecccCCH--HHHHHHhCCCCCCCeEEECCCCc--cCccEEEEeccCCc-----chhhh
Confidence 5543 346789999999999853 3466676531 223322211 22355555544432 11111
Q ss_pred hhhHHHHHHHHHHhC-CCCcEEEEeCchHHHHHHHHHHHhh
Q 008605 513 FLNKKSALLQLIEKS-PVSKTIVFCNKVCFSYKCNNLFGFF 552 (560)
Q Consensus 513 ~~~K~~~L~~lL~~~-~~~ktIIFcnS~~~a~~la~~Lk~l 552 (560)
+......+...+.+. ..+++||||+|++.|+.+|+.|..+
T Consensus 300 ~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~ 340 (1724)
T 4f92_B 300 FQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDM 340 (1724)
T ss_dssp HHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHH
Confidence 122223344444433 4679999999999999999999765
No 48
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.93 E-value=6e-26 Score=256.72 Aligned_cols=162 Identities=18% Similarity=0.208 Sum_probs=136.9
Q ss_pred HCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHH
Q 008605 285 RQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (560)
Q Consensus 285 ~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~ 364 (560)
.+|| .|+++|..++|.++.|+ |+.++||+|||++|.+|++...+ .++.++||+||++||.|+++.
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL------------~g~~vlVltptreLA~qd~e~ 143 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNAL------------TGKGVHVVTVNEYLASRDAEQ 143 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHT------------TSSCEEEEESSHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHH------------cCCCEEEEeCCHHHHHHHHHH
Confidence 4799 99999999999999999 99999999999999999985432 245799999999999999999
Q ss_pred HHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHH-HHHHHhc------cccCCCccEEEEccccccCCCCC
Q 008605 365 CRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF-MFLIKEG------ILQLINLRCAILDEVDILFNDED 437 (560)
Q Consensus 365 l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L-~~ll~~~------~~~l~~l~~LViDEah~ll~d~~ 437 (560)
+..+..+ .++++.+++||.+...+. ...+++|+|+||++| .+++..+ .+.+..+.++||||||.|+-|..
T Consensus 144 ~~~l~~~-lgl~v~~i~gg~~~~~r~--~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea 220 (844)
T 1tf5_A 144 MGKIFEF-LGLTVGLNLNSMSKDEKR--EAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEA 220 (844)
T ss_dssp HHHHHHH-TTCCEEECCTTSCHHHHH--HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTT
T ss_pred HHHHHhh-cCCeEEEEeCCCCHHHHH--HhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhcc
Confidence 9999886 689999999998765443 334699999999999 6776553 35678999999999999874443
Q ss_pred ---------------hHHHHHHHHhhCC---------CCCcEE-----------------EEeccCCH
Q 008605 438 ---------------FEVALQSLISSSP---------VTAQYL-----------------FVTATLPV 464 (560)
Q Consensus 438 ---------------f~~~l~~Il~~~~---------~~~Q~I-----------------llSATlp~ 464 (560)
|...+..|+..++ +.+|++ +||||++.
T Consensus 221 ~tplIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~ 288 (844)
T 1tf5_A 221 RTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVA 288 (844)
T ss_dssp TCEEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHH
T ss_pred ccchhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccch
Confidence 7788999999987 468888 89999873
No 49
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.92 E-value=3.7e-25 Score=249.75 Aligned_cols=148 Identities=20% Similarity=0.213 Sum_probs=113.6
Q ss_pred CCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHH
Q 008605 286 QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (560)
Q Consensus 286 ~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l 365 (560)
+|. .|+++|..++|.++.|+ |+.++||+|||++|.+|++.... .++.++||+||++||.|+++.+
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l------------~g~~vlVltPTreLA~Q~~e~~ 135 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNAL------------TGKGVHVVTVNDYLAQRDAENN 135 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHT------------TSSCCEEEESSHHHHHHHHHHH
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHH------------cCCcEEEEcCCHHHHHHHHHHH
Confidence 464 89999999999999998 99999999999999999986542 2457999999999999999999
Q ss_pred HhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHH-HHHHHhcc------ccCCCccEEEEccccccCCCC--
Q 008605 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF-MFLIKEGI------LQLINLRCAILDEVDILFNDE-- 436 (560)
Q Consensus 366 ~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L-~~ll~~~~------~~l~~l~~LViDEah~ll~d~-- 436 (560)
..++.+ .++++.+++||.+... +.+..+++|+|+||++| .++++.+. ..+..+.++||||||.|+.+.
T Consensus 136 ~~l~~~-lgl~v~~i~GG~~~~~--r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~ 212 (853)
T 2fsf_A 136 RPLFEF-LGLTVGINLPGMPAPA--KREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEAR 212 (853)
T ss_dssp HHHHHH-TTCCEEECCTTCCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTT
T ss_pred HHHHHh-cCCeEEEEeCCCCHHH--HHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCc
Confidence 999886 6899999999987643 33445699999999999 78887653 567899999999999999443
Q ss_pred -------------ChHHHHHHHHhhCCC
Q 008605 437 -------------DFEVALQSLISSSPV 451 (560)
Q Consensus 437 -------------~f~~~l~~Il~~~~~ 451 (560)
+|...+..|+..++.
T Consensus 213 tpLIiSg~~~~~~~~y~~i~~iv~~L~~ 240 (853)
T 2fsf_A 213 TPLIISGPAEDSSEMYKRVNKIIPHLIR 240 (853)
T ss_dssp CEEEEEEC--------------------
T ss_pred ccccccCCCccchhHHHHHHHHHHhchh
Confidence 356778888877764
No 50
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.92 E-value=2e-24 Score=252.77 Aligned_cols=171 Identities=19% Similarity=0.266 Sum_probs=134.1
Q ss_pred HCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHH
Q 008605 285 RQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (560)
Q Consensus 285 ~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~ 364 (560)
-.|+..|+++|.++++.++.|+++++++|||+|||++|++|++..+... ....+.++|||+||++|+.|+++.
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~-------~~~~~~~vLvl~Pt~~L~~Q~~~~ 315 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNM-------PAGRKAKVVFLATKVPVYEQQKNV 315 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTC-------CSSCCCCEEEECSSHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhc-------cccCCCeEEEEeCCHHHHHHHHHH
Confidence 3478899999999999999999999999999999999999998776432 112367899999999999999999
Q ss_pred HHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccc-cCCCccEEEEccccccCCCCChHHHHH
Q 008605 365 CRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGIL-QLINLRCAILDEVDILFNDEDFEVALQ 443 (560)
Q Consensus 365 l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~-~l~~l~~LViDEah~ll~d~~f~~~l~ 443 (560)
+++++.. .++++..++|+.....+...+..+++|+|+||++|.+++..+.+ .+.++++|||||||++.....+...+.
T Consensus 316 ~~~~~~~-~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~ 394 (936)
T 4a2w_A 316 FKHHFER-QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMT 394 (936)
T ss_dssp HHHHHHT-TTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHH
T ss_pred HHHHhcc-cCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHH
Confidence 9998763 47899999999876655555556689999999999999988766 788999999999999984434555554
Q ss_pred HHHhh----CCCCCcEEEEeccCC
Q 008605 444 SLISS----SPVTAQYLFVTATLP 463 (560)
Q Consensus 444 ~Il~~----~~~~~Q~IllSATlp 463 (560)
.++.. .....|+++||||+.
T Consensus 395 ~~~~~~~~~~~~~~~~l~LSATp~ 418 (936)
T 4a2w_A 395 RYLEQKFNSASQLPQILGLTASVG 418 (936)
T ss_dssp HHHHHHHTTCSCCCEEEEEESCCC
T ss_pred HHHHHhhccCCCcCeEEEecCCcc
Confidence 54443 245689999999995
No 51
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.92 E-value=2.7e-23 Score=221.57 Aligned_cols=159 Identities=21% Similarity=0.268 Sum_probs=130.6
Q ss_pred CChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhh
Q 008605 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (560)
Q Consensus 290 ~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~ 369 (560)
.|+++|.++++.++.+ ++++.+|||+|||++++++++..+.. .+.++|||+|+++|+.|+.+.++++.
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~-----------~~~~~liv~P~~~L~~q~~~~~~~~~ 76 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK-----------YGGKVLMLAPTKPLVLQHAESFRRLF 76 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH-----------SCSCEEEECSSHHHHHHHHHHHHHHB
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc-----------CCCeEEEEECCHHHHHHHHHHHHHHh
Confidence 6899999999999998 99999999999999999999887752 25579999999999999999999886
Q ss_pred cCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCCChHHHHHHHHhhC
Q 008605 370 KCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449 (560)
Q Consensus 370 ~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~ 449 (560)
.. ...++..++|+........ +...++|+|+||+.|...+..+.+.+.++++|||||||++.++..+.. +...+...
T Consensus 77 ~~-~~~~v~~~~g~~~~~~~~~-~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~-~~~~~~~~ 153 (494)
T 1wp9_A 77 NL-PPEKIVALTGEKSPEERSK-AWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVF-IAREYKRQ 153 (494)
T ss_dssp CS-CGGGEEEECSCSCHHHHHH-HHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHH-HHHHHHHH
T ss_pred Cc-chhheEEeeCCcchhhhhh-hccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHH-HHHHHHhc
Confidence 42 3458888898887654332 233589999999999999888778889999999999999984333444 44444444
Q ss_pred CCCCcEEEEeccCC
Q 008605 450 PVTAQYLFVTATLP 463 (560)
Q Consensus 450 ~~~~Q~IllSATlp 463 (560)
....+++++|||++
T Consensus 154 ~~~~~~l~lTaTp~ 167 (494)
T 1wp9_A 154 AKNPLVIGLTASPG 167 (494)
T ss_dssp CSSCCEEEEESCSC
T ss_pred CCCCeEEEEecCCC
Confidence 56789999999997
No 52
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.91 E-value=5.1e-24 Score=240.89 Aligned_cols=162 Identities=19% Similarity=0.220 Sum_probs=137.8
Q ss_pred HCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHH
Q 008605 285 RQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (560)
Q Consensus 285 ~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~ 364 (560)
.+|+ .|+++|..++|.++.|+ |+.++||+|||++|.+|++...+. +..++||+||++||.|+++.
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~------------g~~v~VvTpTreLA~Qdae~ 171 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA------------GNGVHIVTVNDYLAKRDSEW 171 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT------------TSCEEEEESSHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh------------CCCeEEEeCCHHHHHHHHHH
Confidence 3688 99999999999999998 999999999999999999754432 34699999999999999999
Q ss_pred HHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHH-HHHHHhc------cccCCCccEEEEccccccCCCC-
Q 008605 365 CRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF-MFLIKEG------ILQLINLRCAILDEVDILFNDE- 436 (560)
Q Consensus 365 l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L-~~ll~~~------~~~l~~l~~LViDEah~ll~d~- 436 (560)
+..+..+ .++++.+++||.+...+ ....+++|+|+||++| .++++.+ .+.+..+.++||||||.|+.|.
T Consensus 172 m~~l~~~-lGLsv~~i~gg~~~~~r--~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDea 248 (922)
T 1nkt_A 172 MGRVHRF-LGLQVGVILATMTPDER--RVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEA 248 (922)
T ss_dssp HHHHHHH-TTCCEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGG
T ss_pred HHHHHhh-cCCeEEEEeCCCCHHHH--HHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcC
Confidence 9999886 68999999999875443 3334699999999999 7777664 3567889999999999998432
Q ss_pred --------------ChHHHHHHHHhhCC---------CCCcEE-----------------EEeccCCH
Q 008605 437 --------------DFEVALQSLISSSP---------VTAQYL-----------------FVTATLPV 464 (560)
Q Consensus 437 --------------~f~~~l~~Il~~~~---------~~~Q~I-----------------llSATlp~ 464 (560)
+|...+..|+..++ +.+|++ ++|||++.
T Consensus 249 rtPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~ 316 (922)
T 1nkt_A 249 RTPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSP 316 (922)
T ss_dssp GSCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCC
T ss_pred ccceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchh
Confidence 58889999999997 678998 99999874
No 53
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.90 E-value=5.3e-24 Score=241.17 Aligned_cols=167 Identities=20% Similarity=0.249 Sum_probs=131.4
Q ss_pred CChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHH-HHHHHhh
Q 008605 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQV-LSNCRSL 368 (560)
Q Consensus 290 ~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi-~~~l~~l 368 (560)
.|+++|.++++.++.|+++|+++|||+|||++|++|++..+...... ..+.++|||+|+++|+.|+ .+.++++
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~------~~~~~vlvl~P~~~L~~Q~~~~~l~~~ 80 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKA------SEPGKVIVLVNKVLLVEQLFRKEFQPF 80 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHH------TCCCCBCCEESCSHHHHHHHHHTHHHH
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccc------CCCCeEEEEECCHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999988765321 2346799999999999999 9999998
Q ss_pred hcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHH------HhccccCCCccEEEEccccccCCCCChHHHH
Q 008605 369 SKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLI------KEGILQLINLRCAILDEVDILFNDEDFEVAL 442 (560)
Q Consensus 369 ~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll------~~~~~~l~~l~~LViDEah~ll~d~~f~~~l 442 (560)
+.. .+++..++|+.....+...+...++|+|+||++|...+ ....+.+..+++|||||||++.....+...+
T Consensus 81 ~~~--~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~ 158 (699)
T 4gl2_A 81 LKK--WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIM 158 (699)
T ss_dssp HTT--TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHH
T ss_pred cCc--CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHH
Confidence 753 48999999998766555555567999999999999888 4455678899999999999987444455554
Q ss_pred HHHHhhC-------------CCCCcEEEEeccCCH
Q 008605 443 QSLISSS-------------PVTAQYLFVTATLPV 464 (560)
Q Consensus 443 ~~Il~~~-------------~~~~Q~IllSATlp~ 464 (560)
..++... .+..|+|++|||+..
T Consensus 159 ~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~ 193 (699)
T 4gl2_A 159 RHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGV 193 (699)
T ss_dssp HHHHHHHHHHHHHHC----CCCCCEEEEECSCCCC
T ss_pred HHHHHhhhcccccccccccCCCCCEEEEecccccc
Confidence 4443321 156799999999985
No 54
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.90 E-value=1.1e-23 Score=202.71 Aligned_cols=168 Identities=20% Similarity=0.239 Sum_probs=124.3
Q ss_pred CCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHH-HHHH
Q 008605 286 QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQ-VLSN 364 (560)
Q Consensus 286 ~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Q-i~~~ 364 (560)
.....|+++|.++++.++.++++++.+|||+|||++|+++++..+..... ...+.++||++|+++|+.| +.+.
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~------~~~~~~~lil~p~~~L~~q~~~~~ 102 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKK------ASEPGKVIVLVNKVLLVEQLFRKE 102 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHH------TTCCCCEEEEESSHHHHHHHHHHT
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhccc------ccCCCcEEEEECHHHHHHHHHHHH
Confidence 35568999999999999999999999999999999999999987765421 1246689999999999999 7788
Q ss_pred HHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhcc------ccCCCccEEEEccccccCCCCCh
Q 008605 365 CRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGI------LQLINLRCAILDEVDILFNDEDF 438 (560)
Q Consensus 365 l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~------~~l~~l~~LViDEah~ll~d~~f 438 (560)
++.+.. ..+.+..+.|+.........+..+++|+|+||++|...+.... ..+.++++|||||||++.....+
T Consensus 103 ~~~~~~--~~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~ 180 (216)
T 3b6e_A 103 FQPFLK--KWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVY 180 (216)
T ss_dssp HHHHHT--TTSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CH
T ss_pred HHHHhc--cCceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcH
Confidence 888865 3678888888776544444444468999999999998887643 56788999999999999833345
Q ss_pred HHHHHHHHhhC-------------CCCCcEEEEecc
Q 008605 439 EVALQSLISSS-------------PVTAQYLFVTAT 461 (560)
Q Consensus 439 ~~~l~~Il~~~-------------~~~~Q~IllSAT 461 (560)
...+..++... .+..++|+||||
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 181 NNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 55555544322 157899999998
No 55
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.89 E-value=1.4e-21 Score=232.61 Aligned_cols=238 Identities=19% Similarity=0.176 Sum_probs=170.1
Q ss_pred cCCCHHHHHHH-HHCCCCCChHHHHHHHHHHHc----CC--cEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCC
Q 008605 273 LGCSDYMIESL-KRQNFLRPSQIQAMAFPPVVE----GK--SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGS 345 (560)
Q Consensus 273 l~L~~~ll~~L-~~~g~~~pt~iQ~~aip~il~----g~--dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~ 345 (560)
++++......+ ..++|. ||++|.+|++.++. |+ |++++++||+|||++|+++++..+. .+
T Consensus 586 ~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~------------~g 652 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD------------NH 652 (1151)
T ss_dssp CCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT------------TT
T ss_pred CCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH------------hC
Confidence 34566666666 445775 79999999999886 66 9999999999999999998887542 35
Q ss_pred CEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHH---HHHhcC-CCcEEEECHHHHHHHHHhccccCCCc
Q 008605 346 PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ---LENLQE-GVDVLIATPGRFMFLIKEGILQLINL 421 (560)
Q Consensus 346 ~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~---~~~l~~-~~~IlV~TP~~L~~ll~~~~~~l~~l 421 (560)
.+++||+||++|+.|+++.++++.. ..++++..+++....... +..+.. .++|+|+||+.+ ...+.+.++
T Consensus 653 ~~vlvlvPt~~La~Q~~~~~~~~~~-~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll-----~~~~~~~~l 726 (1151)
T 2eyq_A 653 KQVAVLVPTTLLAQQHYDNFRDRFA-NWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL-----QSDVKFKDL 726 (1151)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHST-TTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHH-----HSCCCCSSE
T ss_pred CeEEEEechHHHHHHHHHHHHHHhh-cCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHH-----hCCcccccc
Confidence 6899999999999999999988765 356888888877655443 334444 499999999765 345678899
Q ss_pred cEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCC
Q 008605 422 RCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSG 501 (560)
Q Consensus 422 ~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~ 501 (560)
++|||||+|++. .....++..+...+++++||||+++.........+.+..++..... ....+..++....
T Consensus 727 ~lvIiDEaH~~g------~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~--~r~~i~~~~~~~~- 797 (1151)
T 2eyq_A 727 GLLIVDEEHRFG------VRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA--RRLAVKTFVREYD- 797 (1151)
T ss_dssp EEEEEESGGGSC------HHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCC--BCBCEEEEEEECC-
T ss_pred ceEEEechHhcC------hHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCCC--CccccEEEEecCC-
Confidence 999999999964 2234445555667899999999876666655555555444332221 1223444433322
Q ss_pred CCCCCCChhhhhhhHHHHHHHHHHh-CCCCcEEEEeCchHHHHHHHHHHHhh
Q 008605 502 DQESDKTPETAFLNKKSALLQLIEK-SPVSKTIVFCNKVCFSYKCNNLFGFF 552 (560)
Q Consensus 502 ~~~~~~~~~~~~~~K~~~L~~lL~~-~~~~ktIIFcnS~~~a~~la~~Lk~l 552 (560)
+......+++. ..+++++||||++++|+.+++.|+..
T Consensus 798 --------------~~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~ 835 (1151)
T 2eyq_A 798 --------------SMVVREAILREILRGGQVYYLYNDVENIQKAAERLAEL 835 (1151)
T ss_dssp --------------HHHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHh
Confidence 11222223322 24589999999999999999999876
No 56
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.88 E-value=1.8e-22 Score=230.87 Aligned_cols=167 Identities=19% Similarity=0.190 Sum_probs=130.4
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHHcC------CcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEE
Q 008605 277 DYMIESLKRQNFLRPSQIQAMAFPPVVEG------KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVI 350 (560)
Q Consensus 277 ~~ll~~L~~~g~~~pt~iQ~~aip~il~g------~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLi 350 (560)
+.+...+..++| .||++|.++|+.++.+ ++++++++||||||++|++|++..+.. +.+++|
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~------------g~qvlv 422 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA------------GFQTAF 422 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH------------TSCEEE
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc------------CCeEEE
Confidence 344455678899 9999999999999875 599999999999999999999988743 457999
Q ss_pred EcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHH---HHHhcC-CCcEEEECHHHHHHHHHhccccCCCccEEEE
Q 008605 351 LAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ---LENLQE-GVDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (560)
Q Consensus 351 l~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~---~~~l~~-~~~IlV~TP~~L~~ll~~~~~~l~~l~~LVi 426 (560)
++||++||.|+++.++++... .++++..++|+...... +..+.. .++|+|+||+.+.+ .+.+.++++|||
T Consensus 423 laPtr~La~Q~~~~l~~~~~~-~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVI 496 (780)
T 1gm5_A 423 MVPTSILAIQHYRRTVESFSK-FNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVII 496 (780)
T ss_dssp ECSCHHHHHHHHHHHHHHHTC-SSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEE
T ss_pred EeCcHHHHHHHHHHHHHHhhh-cCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEe
Confidence 999999999999999998753 57899999999876553 334444 49999999987733 467889999999
Q ss_pred ccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHH
Q 008605 427 DEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYN 468 (560)
Q Consensus 427 DEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~ 468 (560)
||+|++. ... +..+......+|+++||||+.+....
T Consensus 497 DEaHr~g-~~q-----r~~l~~~~~~~~vL~mSATp~p~tl~ 532 (780)
T 1gm5_A 497 DEQHRFG-VKQ-----REALMNKGKMVDTLVMSATPIPRSMA 532 (780)
T ss_dssp ESCCCC-----------CCCCSSSSCCCEEEEESSCCCHHHH
T ss_pred cccchhh-HHH-----HHHHHHhCCCCCEEEEeCCCCHHHHH
Confidence 9999975 211 12222333578999999998655433
No 57
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.87 E-value=1e-22 Score=220.16 Aligned_cols=209 Identities=17% Similarity=0.100 Sum_probs=142.5
Q ss_pred CCCCChHHHHHHHHHHHcCCcE-EEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHH
Q 008605 287 NFLRPSQIQAMAFPPVVEGKSC-ILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (560)
Q Consensus 287 g~~~pt~iQ~~aip~il~g~dv-lv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l 365 (560)
|+..|+|+|+ +||.+++++++ ++++|||||||++|++|++..+.. .++++||++||++|+.|+++.+
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~-----------~~~~~lvl~Ptr~La~Q~~~~l 68 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL-----------RRLRTLILAPTRVVAAEMEEAL 68 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH-----------TTCCEEEEESSHHHHHHHHHHT
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh-----------cCCcEEEECCCHHHHHHHHHHh
Confidence 7889999986 79999999887 899999999999999999987754 2568999999999999999987
Q ss_pred HhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCCChHHHHHHH
Q 008605 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445 (560)
Q Consensus 366 ~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~l~~I 445 (560)
..+ .+....+.... ....+..|.++|++.+...+... ..+.++++|||||||++ +..+...+..+
T Consensus 69 ~g~-------~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~--~~~~~~~~~~~ 133 (451)
T 2jlq_A 69 RGL-------PIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT--DPCSVAARGYI 133 (451)
T ss_dssp TTS-------CEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC--SHHHHHHHHHH
T ss_pred cCc-------eeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC--CcchHHHHHHH
Confidence 532 22221111110 11234679999999998777654 56889999999999977 34444444444
Q ss_pred Hhh-CCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCCCCCCChhhhhhhHHHHHHHHH
Q 008605 446 ISS-SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLI 524 (560)
Q Consensus 446 l~~-~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~K~~~L~~lL 524 (560)
... ...++|+++||||+|..+..+ ...+..++... ...+. .. + ..+..++
T Consensus 134 ~~~~~~~~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~-------------~~~p~-~~--------~----~~~~~~l 184 (451)
T 2jlq_A 134 STRVEMGEAAAIFMTATPPGSTDPF---PQSNSPIEDIE-------------REIPE-RS--------W----NTGFDWI 184 (451)
T ss_dssp HHHHHTTSCEEEEECSSCTTCCCSS---CCCSSCEEEEE-------------CCCCS-SC--------C----SSSCHHH
T ss_pred HHhhcCCCceEEEEccCCCccchhh---hcCCCceEecC-------------ccCCc-hh--------h----HHHHHHH
Confidence 332 345799999999998743221 11222211110 00000 00 0 0112233
Q ss_pred HhCCCCcEEEEeCchHHHHHHHHHHHhh
Q 008605 525 EKSPVSKTIVFCNKVCFSYKCNNLFGFF 552 (560)
Q Consensus 525 ~~~~~~ktIIFcnS~~~a~~la~~Lk~l 552 (560)
... .+++||||+++++|+.+++.|+..
T Consensus 185 ~~~-~~~~lVF~~s~~~a~~l~~~L~~~ 211 (451)
T 2jlq_A 185 TDY-QGKTVWFVPSIKAGNDIANCLRKS 211 (451)
T ss_dssp HHC-CSCEEEECSSHHHHHHHHHHHHTT
T ss_pred HhC-CCCEEEEcCCHHHHHHHHHHHHHc
Confidence 333 469999999999999999999875
No 58
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.87 E-value=1.7e-21 Score=223.48 Aligned_cols=252 Identities=16% Similarity=0.155 Sum_probs=173.7
Q ss_pred cccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHc-CCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCC
Q 008605 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVE-GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGS 345 (560)
Q Consensus 267 ~~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~-g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~ 345 (560)
..+|.++++++.+.+.|...+ ..|+++|+++|+.++. +++++++||||||||+ ++|++.. .... ....+
T Consensus 71 ~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~--~~~~-----~~~~g 140 (773)
T 2xau_A 71 INPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVL--FDEM-----PHLEN 140 (773)
T ss_dssp BCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHH--HHHC-----GGGGT
T ss_pred CCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHH--Hhcc-----ccCCC
Confidence 467999999999999998887 7999999999988775 5679999999999999 5676622 2111 01135
Q ss_pred CEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEE
Q 008605 346 PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAI 425 (560)
Q Consensus 346 ~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LV 425 (560)
.+++|++|+++|+.|+++.+...........+........ ......+|+|+||+++...+... ..+.++++||
T Consensus 141 ~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~------~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lI 213 (773)
T 2xau_A 141 TQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN------KTSNKTILKYMTDGMLLREAMED-HDLSRYSCII 213 (773)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE------ECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEE
T ss_pred ceEEecCchHHHHHHHHHHHHHHhCCchhheecceecccc------ccCCCCCEEEECHHHHHHHHhhC-ccccCCCEEE
Confidence 6899999999999999987765432112222222111111 11245899999999999877664 4588999999
Q ss_pred Eccccc-cCCCCC-hHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCC
Q 008605 426 LDEVDI-LFNDED-FEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503 (560)
Q Consensus 426 iDEah~-ll~d~~-f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~ 503 (560)
|||+|. ++ +.. +...++.+.... ++.|+|+||||++.+ .+.+++.+..++...... ..+.+++......+
T Consensus 214 lDEah~R~l-d~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~~---~l~~~~~~~~vi~v~gr~---~pv~~~~~~~~~~~ 285 (773)
T 2xau_A 214 LDEAHERTL-ATDILMGLLKQVVKRR-PDLKIIIMSATLDAE---KFQRYFNDAPLLAVPGRT---YPVELYYTPEFQRD 285 (773)
T ss_dssp ECSGGGCCH-HHHHHHHHHHHHHHHC-TTCEEEEEESCSCCH---HHHHHTTSCCEEECCCCC---CCEEEECCSSCCSC
T ss_pred ecCcccccc-chHHHHHHHHHHHHhC-CCceEEEEeccccHH---HHHHHhcCCCcccccCcc---cceEEEEecCCchh
Confidence 999996 55 322 334455555554 478999999999754 456777765555544322 23555444332211
Q ss_pred CCCCChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHh
Q 008605 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGF 551 (560)
Q Consensus 504 ~~~~~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~ 551 (560)
.....+..+.+++.....+++||||+++++|+.+++.|+.
T Consensus 286 --------~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~ 325 (773)
T 2xau_A 286 --------YLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISL 325 (773)
T ss_dssp --------HHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHH
Confidence 0112344555565555678999999999999999999985
No 59
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.87 E-value=2.3e-23 Score=233.43 Aligned_cols=226 Identities=15% Similarity=0.069 Sum_probs=152.3
Q ss_pred ccc-cCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEE
Q 008605 270 FKE-LGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRV 348 (560)
Q Consensus 270 F~~-l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~a 348 (560)
|.. +++++.++++|... +..|+|+|+++++.+++|+|++++||||||||++|++|+++.+.. .++++
T Consensus 151 ~~~~l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~-----------~~~~v 218 (618)
T 2whx_A 151 GNGVVTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK-----------RRLRT 218 (618)
T ss_dssp CC---------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-----------TTCCE
T ss_pred ccccccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh-----------CCCeE
Confidence 444 55666666666543 578999998899999999999999999999999999999998864 25689
Q ss_pred EEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEcc
Q 008605 349 VILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDE 428 (560)
Q Consensus 349 Lil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDE 428 (560)
|||+|||+||.|+++.++.+ .+. +.+.. .. ..-..+..+.++|.+.+...+... ..+.++++|||||
T Consensus 219 Lvl~PtreLa~Qi~~~l~~~-------~v~-~~~~~-l~---~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDE 285 (618)
T 2whx_A 219 LILAPTRVVAAEMEEALRGL-------PIR-YQTPA-VK---SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDE 285 (618)
T ss_dssp EEEESSHHHHHHHHHHTTTS-------CEE-ECCTT-SS---CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEES
T ss_pred EEEcChHHHHHHHHHHhcCC-------cee-Eeccc-ce---eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEEC
Confidence 99999999999999887632 222 11111 00 001123467788888887666554 4588999999999
Q ss_pred ccccCCCCChHHHHHHHHhhCC-CCCcEEEEeccCCHHHHHHHHHhCC-CCeEEeCCCccccCCCceeEEEEcCCCCCCC
Q 008605 429 VDILFNDEDFEVALQSLISSSP-VTAQYLFVTATLPVEIYNKLVEVFP-DCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506 (560)
Q Consensus 429 ah~ll~d~~f~~~l~~Il~~~~-~~~Q~IllSATlp~~v~~~l~~~~~-~~~~i~~~~~~~~~~~i~~~~v~~~~~~~~~ 506 (560)
||++ +.+|...+..++..++ .++|+++||||++..+.. +.. +...+... ...+...
T Consensus 286 ah~~--~~~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~----~~~~~~~~~~v~-------------~~~~~~~--- 343 (618)
T 2whx_A 286 AHFT--DPCSVAARGYISTRVEMGEAAAIFMTATPPGSTDP----FPQSNSPIEDIE-------------REIPERS--- 343 (618)
T ss_dssp TTCC--SHHHHHHHHHHHHHHHHTSCEEEEECSSCTTCCCS----SCCCSSCEEEEE-------------CCCCSSC---
T ss_pred CCCC--CccHHHHHHHHHHHhcccCccEEEEECCCchhhhh----hhccCCceeeec-------------ccCCHHH---
Confidence 9998 4678888888887765 689999999999876421 111 11111100 0001100
Q ss_pred CChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhhc
Q 008605 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFFS 553 (560)
Q Consensus 507 ~~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l~ 553 (560)
...+...+.+. .+++||||+|+++|+.+++.|+..+
T Consensus 344 ----------~~~ll~~l~~~-~~~~LVF~~s~~~a~~l~~~L~~~g 379 (618)
T 2whx_A 344 ----------WNTGFDWITDY-QGKTVWFVPSIKAGNDIANCLRKSG 379 (618)
T ss_dssp ----------CSSSCHHHHHC-CSCEEEECSSHHHHHHHHHHHHHTT
T ss_pred ----------HHHHHHHHHhC-CCCEEEEECChhHHHHHHHHHHHcC
Confidence 01122223332 4699999999999999999998763
No 60
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.87 E-value=5.1e-22 Score=195.93 Aligned_cols=183 Identities=14% Similarity=0.202 Sum_probs=135.1
Q ss_pred CHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCH
Q 008605 276 SDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTA 355 (560)
Q Consensus 276 ~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~Ptr 355 (560)
++.+.+.+.......++++|.++++.+..|++++++||||||||++|.++++..+.... .....++|+++|++
T Consensus 47 ~~~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~-------~~~~~~~l~~~p~~ 119 (235)
T 3llm_A 47 DHDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQND-------RAAECNIVVTQPRR 119 (235)
T ss_dssp CHHHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTT-------CGGGCEEEEEESSH
T ss_pred CHHHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcC-------CCCceEEEEeccch
Confidence 44444444333444579999999999999999999999999999999999888765431 12356899999999
Q ss_pred HHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEcccccc-CC
Q 008605 356 ELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDIL-FN 434 (560)
Q Consensus 356 eLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~l-l~ 434 (560)
+|+.|+++.+........+..+......... ....+++|+|+||++|.+++.. .+.++++|||||||.+ +
T Consensus 120 ~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~- 190 (235)
T 3llm_A 120 ISAVSVAERVAFERGEEPGKSCGYSVRFESI-----LPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDI- 190 (235)
T ss_dssp HHHHHHHHHHHHTTTCCTTSSEEEEETTEEE-----CCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCH-
T ss_pred HHHHHHHHHHHHHhccccCceEEEeechhhc-----cCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCc-
Confidence 9999999988766543233344332221110 1124588999999999999876 4889999999999986 4
Q ss_pred CCChH-HHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCe
Q 008605 435 DEDFE-VALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCK 478 (560)
Q Consensus 435 d~~f~-~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~ 478 (560)
+.+|. ..++.++... ++.|+++||||++.+. +.++|.+..
T Consensus 191 ~~~~~~~~l~~i~~~~-~~~~~il~SAT~~~~~---~~~~~~~~p 231 (235)
T 3llm_A 191 NTDFLLVVLRDVVQAY-PEVRIVLMSATIDTSM---FCEYFFNCP 231 (235)
T ss_dssp HHHHHHHHHHHHHHHC-TTSEEEEEECSSCCHH---HHHHTTSCC
T ss_pred chHHHHHHHHHHHhhC-CCCeEEEEecCCCHHH---HHHHcCCCC
Confidence 55666 4667777665 4789999999999875 667776543
No 61
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.87 E-value=6.4e-22 Score=216.11 Aligned_cols=241 Identities=14% Similarity=0.101 Sum_probs=162.1
Q ss_pred CCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHh
Q 008605 288 FLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS 367 (560)
Q Consensus 288 ~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~ 367 (560)
...|+++|.+|++.++.+++++++++||+|||++|++++...+.. .+.++|||+||++|+.|+++.+++
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-----------~~~~vlvl~P~~~L~~Q~~~~~~~ 179 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-----------YEGKILIIVPTTALTTQMADDFVD 179 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH-----------CSSEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC-----------CCCeEEEEECcHHHHHHHHHHHHH
Confidence 348999999999999999999999999999999999988877643 134899999999999999999998
Q ss_pred hhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCCChHHHHHHHHh
Q 008605 368 LSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447 (560)
Q Consensus 368 l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~l~~Il~ 447 (560)
+..+ ..+.+..++|+.....+ +..+++|+|+||+.|.. .....+.++++|||||||++. . ..+..+++
T Consensus 180 ~~~~-~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~---~~~~~~~~~~liIiDE~H~~~-~----~~~~~il~ 247 (510)
T 2oca_A 180 YRLF-SHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLAT-G----KSISSIIS 247 (510)
T ss_dssp TTSS-CGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTT---SCGGGGGGEEEEEEETGGGCC-H----HHHHHHGG
T ss_pred hhcC-CccceEEEecCCccccc---cccCCcEEEEeHHHHhh---chhhhhhcCCEEEEECCcCCC-c----ccHHHHHH
Confidence 8653 45788888888766543 44668999999997643 233557789999999999987 3 45778888
Q ss_pred hCCCCCcEEEEeccCCHHHHHH--HHHhCCCCeEEeCCCc------cccCCCceeEEEEcCCCCC---C-CCChh-----
Q 008605 448 SSPVTAQYLFVTATLPVEIYNK--LVEVFPDCKVVMGPGM------HRISPGLEEFLVDCSGDQE---S-DKTPE----- 510 (560)
Q Consensus 448 ~~~~~~Q~IllSATlp~~v~~~--l~~~~~~~~~i~~~~~------~~~~~~i~~~~v~~~~~~~---~-~~~~~----- 510 (560)
.+....++++||||++...... +...+.. .++..... ...+..+....+....... . .....
T Consensus 248 ~~~~~~~~l~lSATp~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (510)
T 2oca_A 248 GLNNCMFKFGLSGSLRDGKANIMQYVGMFGE-IFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKII 326 (510)
T ss_dssp GCTTCCEEEEEESCGGGCSSCHHHHHHHHCS-EECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHH
T ss_pred hcccCcEEEEEEeCCCCCcccHHHhHHhhCC-eEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHH
Confidence 8888889999999997553221 1122222 22111110 1111112222222211000 0 00000
Q ss_pred hhhhhHHHHHHHHHHhC---CCCcEEEEeCchHHHHHHHHHHHhhc
Q 008605 511 TAFLNKKSALLQLIEKS---PVSKTIVFCNKVCFSYKCNNLFGFFS 553 (560)
Q Consensus 511 ~~~~~K~~~L~~lL~~~---~~~ktIIFcnS~~~a~~la~~Lk~l~ 553 (560)
.....+...+.+++... ...++||||+ +++|+.+++.|+..+
T Consensus 327 ~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~ 371 (510)
T 2oca_A 327 TGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEY 371 (510)
T ss_dssp HTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTC
T ss_pred hccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcC
Confidence 00123445566666543 4456677777 899999999998763
No 62
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.86 E-value=3.4e-22 Score=223.61 Aligned_cols=199 Identities=16% Similarity=0.156 Sum_probs=141.1
Q ss_pred hHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhhcC
Q 008605 292 SQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKC 371 (560)
Q Consensus 292 t~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~~ 371 (560)
...|.++++.+..+++++++||||||||++|.+|+++. +.++||++|||+||.|+++.+.+...
T Consensus 219 ~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~---------------g~~vLVl~PTReLA~Qia~~l~~~~g- 282 (666)
T 3o8b_A 219 FTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ---------------GYKVLVLNPSVAATLGFGAYMSKAHG- 282 (666)
T ss_dssp CCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT---------------TCCEEEEESCHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC---------------CCeEEEEcchHHHHHHHHHHHHHHhC-
Confidence 34455555556678899999999999999999988741 34799999999999999998876643
Q ss_pred CCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCCChHHHHHHHHhhCCC
Q 008605 372 GVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPV 451 (560)
Q Consensus 372 ~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~ 451 (560)
..+...+|+.. +..+++|+|+||++| +....+.+.++++|||||||++ +.+|...+..|++.++.
T Consensus 283 ---~~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH~l--~~~~~~~l~~Il~~l~~ 347 (666)
T 3o8b_A 283 ---IDPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECHST--DSTTILGIGTVLDQAET 347 (666)
T ss_dssp ---CCCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTTCC--SHHHHHHHHHHHHHTTT
T ss_pred ---CCeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccchhc--CccHHHHHHHHHHhhhh
Confidence 34556677654 346789999999997 4566778889999999999765 57888889999999987
Q ss_pred CCc--EEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCCCCCCChhhhhhhHHHHHHHHHHhCCC
Q 008605 452 TAQ--YLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPV 529 (560)
Q Consensus 452 ~~Q--~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~K~~~L~~lL~~~~~ 529 (560)
..| ++++|||++..+. ...+ .+.......... . ... ..+.. +.....
T Consensus 348 ~~~~llil~SAT~~~~i~------~~~p-------------~i~~v~~~~~~~--i-~~~----~~~~~-----l~~~~~ 396 (666)
T 3o8b_A 348 AGARLVVLATATPPGSVT------VPHP-------------NIEEVALSNTGE--I-PFY----GKAIP-----IEAIRG 396 (666)
T ss_dssp TTCSEEEEEESSCTTCCC------CCCT-------------TEEEEECBSCSS--E-EET----TEEEC-----GGGSSS
T ss_pred cCCceEEEECCCCCcccc------cCCc-------------ceEEEeecccch--h-HHH----Hhhhh-----hhhccC
Confidence 777 7788999987310 0111 111100000000 0 000 00000 122356
Q ss_pred CcEEEEeCchHHHHHHHHHHHhh
Q 008605 530 SKTIVFCNKVCFSYKCNNLFGFF 552 (560)
Q Consensus 530 ~ktIIFcnS~~~a~~la~~Lk~l 552 (560)
+++|||||++++|+.+++.|+..
T Consensus 397 ~~vLVFv~Tr~~ae~la~~L~~~ 419 (666)
T 3o8b_A 397 GRHLIFCHSKKKCDELAAKLSGL 419 (666)
T ss_dssp SEEEEECSCHHHHHHHHHHHHTT
T ss_pred CcEEEEeCCHHHHHHHHHHHHhC
Confidence 89999999999999999999875
No 63
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.85 E-value=3.4e-21 Score=208.30 Aligned_cols=136 Identities=21% Similarity=0.133 Sum_probs=111.8
Q ss_pred CChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhh
Q 008605 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (560)
Q Consensus 290 ~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~ 369 (560)
.|+++|.++++.++.++++++++|||+|||++|+.++... +.++|||+|+++|+.|+++.++++
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~---------------~~~~Lvl~P~~~L~~Q~~~~~~~~- 156 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---------------STPTLIVVPTLALAEQWKERLGIF- 156 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH---------------CSCEEEEESSHHHHHHHHHHGGGG-
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc---------------CCCEEEEECCHHHHHHHHHHHHhC-
Confidence 6999999999999999999999999999999999888643 346999999999999999999884
Q ss_pred cCCCCce-EEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCCChHHHHHHHHhh
Q 008605 370 KCGVPFR-SMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448 (560)
Q Consensus 370 ~~~~~i~-v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~l~~Il~~ 448 (560)
++. +..+.|+... ..+|+|+||+.+...+..- ..++++|||||||++. +..|.. +++.
T Consensus 157 ----~~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~~---~~~~~liIvDEaH~~~-~~~~~~----~~~~ 215 (472)
T 2fwr_A 157 ----GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLP-AESYVQ----IAQM 215 (472)
T ss_dssp ----CGGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHHH---TTTCSEEEEETGGGTT-STTTHH----HHHT
T ss_pred ----CCcceEEECCCcCC---------cCCEEEEEcHHHHHHHHHh---cCCCCEEEEECCcCCC-ChHHHH----HHHh
Confidence 356 7777777642 4799999999987665421 2458999999999998 566654 4444
Q ss_pred CCCCCcEEEEeccCC
Q 008605 449 SPVTAQYLFVTATLP 463 (560)
Q Consensus 449 ~~~~~Q~IllSATlp 463 (560)
+ ...+++++|||+.
T Consensus 216 ~-~~~~~l~lSATp~ 229 (472)
T 2fwr_A 216 S-IAPFRLGLTATFE 229 (472)
T ss_dssp C-CCSEEEEEESCCC
T ss_pred c-CCCeEEEEecCcc
Confidence 4 3678999999997
No 64
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.83 E-value=9.3e-22 Score=222.06 Aligned_cols=213 Identities=19% Similarity=0.173 Sum_probs=134.4
Q ss_pred HHCCCC-----CChHHHH-----HHHHHHH------cCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCE
Q 008605 284 KRQNFL-----RPSQIQA-----MAFPPVV------EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (560)
Q Consensus 284 ~~~g~~-----~pt~iQ~-----~aip~il------~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~ 347 (560)
..+||. .||++|+ ++||.++ .|+|+++++|||||||++|++|+++.+.. .+++
T Consensus 204 ~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~-----------~~~~ 272 (673)
T 2wv9_A 204 YGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ-----------KRLR 272 (673)
T ss_dssp EEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH-----------TTCC
T ss_pred eeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh-----------CCCc
Confidence 344555 8999999 9999988 89999999999999999999999988754 2568
Q ss_pred EEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEc
Q 008605 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427 (560)
Q Consensus 348 aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViD 427 (560)
+|||+||++||.|+++.++.+. +. ...+.... .-..+.-+-+.+.+.+...+... ..+.++++||||
T Consensus 273 ~lilaPTr~La~Q~~~~l~~~~-----i~--~~~~~l~~-----v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViD 339 (673)
T 2wv9_A 273 TAVLAPTRVVAAEMAEALRGLP-----VR--YLTPAVQR-----EHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMD 339 (673)
T ss_dssp EEEEESSHHHHHHHHHHTTTSC-----CE--ECCC---C-----CCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEE
T ss_pred EEEEccHHHHHHHHHHHHhcCC-----ee--eecccccc-----cCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEe
Confidence 9999999999999999887552 11 11110000 00011223344555554444332 468899999999
Q ss_pred cccccCCCCChHHHHHHHHhhCC-CCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCCCCC
Q 008605 428 EVDILFNDEDFEVALQSLISSSP-VTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506 (560)
Q Consensus 428 Eah~ll~d~~f~~~l~~Il~~~~-~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~~~ 506 (560)
|||++ +..+...+..+....+ ..+|+++||||++..+.. .... ...+......+....
T Consensus 340 EaH~~--~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~----~~~~------------~~~i~~v~~~~~~~~--- 398 (673)
T 2wv9_A 340 EAHFT--DPASIAARGYIATRVEAGEAAAIFMTATPPGTSDP----FPDT------------NSPVHDVSSEIPDRA--- 398 (673)
T ss_dssp STTCC--CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCS----SCCC------------SSCEEEEECCCCSSC---
T ss_pred CCccc--CccHHHHHHHHHHhccccCCcEEEEcCCCChhhhh----hccc------------CCceEEEeeecCHHH---
Confidence 99998 2334444444444442 678999999999865321 1110 011111111111110
Q ss_pred CChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhh
Q 008605 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFF 552 (560)
Q Consensus 507 ~~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l 552 (560)
+ ..+...+.. ..+++||||+++++|+.+++.|+..
T Consensus 399 ---------~-~~~l~~l~~-~~~~~lVF~~s~~~~e~la~~L~~~ 433 (673)
T 2wv9_A 399 ---------W-SSGFEWITD-YAGKTVWFVASVKMSNEIAQCLQRA 433 (673)
T ss_dssp ---------C-SSCCHHHHS-CCSCEEEECSSHHHHHHHHHHHHTT
T ss_pred ---------H-HHHHHHHHh-CCCCEEEEECCHHHHHHHHHHHHhC
Confidence 0 111222223 3579999999999999999999876
No 65
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.82 E-value=3.2e-20 Score=187.80 Aligned_cols=153 Identities=16% Similarity=0.123 Sum_probs=123.3
Q ss_pred CChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhh
Q 008605 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (560)
Q Consensus 290 ~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~ 369 (560)
.|+++|.++++.++.+++.++++|||+|||+++++++...+.. ...++|||+||++|+.|+.+.++++.
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-----------~~~~~lil~Pt~~L~~q~~~~l~~~~ 181 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-----------YEGKILIIVPTTALTTQMADDFVDYR 181 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH-----------CSSEEEEECSSHHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc-----------CCCeEEEEECCHHHHHHHHHHHHHhc
Confidence 7999999999999988889999999999999998887766542 13379999999999999999999886
Q ss_pred cCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCCChHHHHHHHHhhC
Q 008605 370 KCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449 (560)
Q Consensus 370 ~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~ 449 (560)
.. ....+..++++..... ....+.+|+|+||+.+... ....+.++++||+||||++. + ..+..++..+
T Consensus 182 ~~-~~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~-~----~~~~~il~~~ 249 (282)
T 1rif_A 182 LF-SHAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLAT-G----KSISSIISGL 249 (282)
T ss_dssp SC-CGGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCC-H----HHHHHHTTTC
T ss_pred cc-ccceEEEEeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCC-c----ccHHHHHHHh
Confidence 52 4567777777765432 2234589999999877432 22346788999999999997 2 4777888888
Q ss_pred CCCCcEEEEeccCCHH
Q 008605 450 PVTAQYLFVTATLPVE 465 (560)
Q Consensus 450 ~~~~Q~IllSATlp~~ 465 (560)
....+++++|||++..
T Consensus 250 ~~~~~~l~lSATp~~~ 265 (282)
T 1rif_A 250 NNCMFKFGLSGSLRDG 265 (282)
T ss_dssp TTCCEEEEECSSCCTT
T ss_pred hcCCeEEEEeCCCCCc
Confidence 7789999999999754
No 66
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.82 E-value=1.2e-21 Score=211.12 Aligned_cols=188 Identities=17% Similarity=0.144 Sum_probs=122.1
Q ss_pred HHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEE
Q 008605 301 PVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV 380 (560)
Q Consensus 301 ~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l 380 (560)
++++|+|+++++|||||||++|++|+++.+... ++++||++||++||.|+++.++.+. +...
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~-----------~~~~lil~Ptr~La~Q~~~~l~~~~-------v~~~ 65 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR-----------RLRTLVLAPTRVVLSEMKEAFHGLD-------VKFH 65 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT-----------TCCEEEEESSHHHHHHHHHHTTTSC-------EEEE
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc-----------CCeEEEEcchHHHHHHHHHHHhcCC-------eEEe
Confidence 356899999999999999999999999887642 5689999999999999999887442 2221
Q ss_pred eCCcchHHHHHHhcCCCcEEEECHHHHHHHHHh--------ccccCCCccEEEEccccccCCCCChHHHHHHHHhhC-CC
Q 008605 381 TGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE--------GILQLINLRCAILDEVDILFNDEDFEVALQSLISSS-PV 451 (560)
Q Consensus 381 ~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~--------~~~~l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~-~~ 451 (560)
.+.. -.|+||+++.+++.. ....+.++++|||||+|++ +..+...+..+.... +.
T Consensus 66 ~~~~--------------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~--~~~~~~~~~~~~~~~~~~ 129 (440)
T 1yks_A 66 TQAF--------------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL--DPASIAARGWAAHRARAN 129 (440)
T ss_dssp SSCC--------------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC--SHHHHHHHHHHHHHHHTT
T ss_pred cccc--------------eeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc--CcchHHHHHHHHHHhccC
Confidence 1110 036666555432222 2234789999999999998 344544444444333 35
Q ss_pred CCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCCCCCCChhhhhhhHHHHHHHHHHhCCCCc
Q 008605 452 TAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSK 531 (560)
Q Consensus 452 ~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~K~~~L~~lL~~~~~~k 531 (560)
+.|+++||||+++.+..+ ... ...+......+..... ..+...+.+. .++
T Consensus 130 ~~~~l~~SAT~~~~~~~~----~~~------------~~~~~~~~~~~~~~~~-------------~~~~~~l~~~-~~~ 179 (440)
T 1yks_A 130 ESATILMTATPPGTSDEF----PHS------------NGEIEDVQTDIPSEPW-------------NTGHDWILAD-KRP 179 (440)
T ss_dssp SCEEEEECSSCTTCCCSS----CCC------------SSCEEEEECCCCSSCC-------------SSSCHHHHHC-CSC
T ss_pred CceEEEEeCCCCchhhhh----hhc------------CCCeeEeeeccChHHH-------------HHHHHHHHhc-CCC
Confidence 799999999998653211 110 0111111111111110 0111222222 479
Q ss_pred EEEEeCchHHHHHHHHHHHhh
Q 008605 532 TIVFCNKVCFSYKCNNLFGFF 552 (560)
Q Consensus 532 tIIFcnS~~~a~~la~~Lk~l 552 (560)
+||||++++.|+.+++.|+..
T Consensus 180 ~lVF~~s~~~a~~l~~~L~~~ 200 (440)
T 1yks_A 180 TAWFLPSIRAANVMAASLRKA 200 (440)
T ss_dssp EEEECSCHHHHHHHHHHHHHT
T ss_pred EEEEeCCHHHHHHHHHHHHHc
Confidence 999999999999999999876
No 67
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.82 E-value=5.8e-20 Score=204.60 Aligned_cols=172 Identities=16% Similarity=0.155 Sum_probs=100.5
Q ss_pred CCChHHHHHHHHHHHc----C-CcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHH-
Q 008605 289 LRPSQIQAMAFPPVVE----G-KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVL- 362 (560)
Q Consensus 289 ~~pt~iQ~~aip~il~----g-~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~- 362 (560)
..|+++|.++++.++. | ++++++++||+|||++++ +++..+....+. .......+++|||+|+++|+.|++
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~-~~~~~l~~~~~~--~~~~~~~~~vlil~P~~~L~~Q~~~ 253 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAF-QISWKLWSARWN--RTGDYRKPRILFLADRNVLVDDPKD 253 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHH-HHHHHHHHTTCC--SSCSSSCCCEEEEEC----------
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHH-HHHHHHHhcccc--cccccCCCeEEEEeCCHHHHHHHHH
Confidence 3799999999998875 4 569999999999999964 455555443211 011225789999999999999998
Q ss_pred HHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHh----ccccCCCccEEEEccccccCCCCCh
Q 008605 363 SNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE----GILQLINLRCAILDEVDILFNDEDF 438 (560)
Q Consensus 363 ~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~----~~~~l~~l~~LViDEah~ll~d~~f 438 (560)
+.++.+.. .+..+.++ ....+.+|+|+||++|...+.. ..+....+++|||||||++. .. .
T Consensus 254 ~~~~~~~~-----~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~-~~-~ 318 (590)
T 3h1t_A 254 KTFTPFGD-----ARHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGS-AR-D 318 (590)
T ss_dssp -CCTTTCS-----SEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC--------
T ss_pred HHHHhcch-----hhhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCcccc-cc-c
Confidence 77765532 23333322 2235689999999999887642 34456779999999999997 32 2
Q ss_pred HHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHhCCCCeE
Q 008605 439 EVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKV 479 (560)
Q Consensus 439 ~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~~~~~~~ 479 (560)
...++.++..++ ..++++||||+.......+..++..+..
T Consensus 319 ~~~~~~il~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~ 358 (590)
T 3h1t_A 319 NSNWREILEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIY 358 (590)
T ss_dssp ---CHHHHHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSE
T ss_pred hHHHHHHHHhCC-cceEEEeccccccccchhHHHHcCCceE
Confidence 245566777765 4789999999875443445556655433
No 68
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.82 E-value=7.9e-20 Score=196.40 Aligned_cols=193 Identities=18% Similarity=0.128 Sum_probs=126.3
Q ss_pred cCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCC
Q 008605 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg 383 (560)
.|+++++++|||||||++|++|+++.+... +.++||++||++|+.|+++.++ ++.+....|+
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~-----------g~~~lvl~Pt~~La~Q~~~~~~-------~~~v~~~~~~ 62 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKK-----------RLRTVILAPTRVVASEMYEALR-------GEPIRYMTPA 62 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHT-----------TCCEEEEESSHHHHHHHHHHTT-------TSCEEEC---
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhC-----------CCCEEEECcHHHHHHHHHHHhC-------CCeEEEEecC
Confidence 378999999999999999999999776542 5689999999999999988775 2344444443
Q ss_pred cchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCCChHHHHHHHHhhC-CCCCcEEEEeccC
Q 008605 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS-PVTAQYLFVTATL 462 (560)
Q Consensus 384 ~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~-~~~~Q~IllSATl 462 (560)
... .-..+..+.+.|.+.+...+.. ...+.++++|||||+|++. ..+...+..+.... +..+|+++||||+
T Consensus 63 ~~~-----~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~~--~~~~~~~~~l~~~~~~~~~~~l~~SAT~ 134 (431)
T 2v6i_A 63 VQS-----ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFLD--PASVAARGYIETRVSMGDAGAIFMTATP 134 (431)
T ss_dssp -----------CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCCS--HHHHHHHHHHHHHHHTTSCEEEEEESSC
T ss_pred ccc-----cCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccCC--ccHHHHHHHHHHHhhCCCCcEEEEeCCC
Confidence 221 1112356777899988766655 4568899999999999973 34445555554442 5689999999999
Q ss_pred CHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCCCCCCChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHH
Q 008605 463 PVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFS 542 (560)
Q Consensus 463 p~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a 542 (560)
++.+.+ .... ...+.......... +...+.+++... .+++||||+++++|
T Consensus 135 ~~~~~~----~~~~------------~~~i~~~~~~~~~~-------------~~~~~~~~l~~~-~~~~lVF~~~~~~~ 184 (431)
T 2v6i_A 135 PGTTEA----FPPS------------NSPIIDEETRIPDK-------------AWNSGYEWITEF-DGRTVWFVHSIKQG 184 (431)
T ss_dssp TTCCCS----SCCC------------SSCCEEEECCCCSS-------------CCSSCCHHHHSC-SSCEEEECSSHHHH
T ss_pred Ccchhh----hcCC------------CCceeeccccCCHH-------------HHHHHHHHHHcC-CCCEEEEeCCHHHH
Confidence 864211 1100 01111110011110 011223344443 46899999999999
Q ss_pred HHHHHHHHhh
Q 008605 543 YKCNNLFGFF 552 (560)
Q Consensus 543 ~~la~~Lk~l 552 (560)
+.+++.|+..
T Consensus 185 ~~l~~~L~~~ 194 (431)
T 2v6i_A 185 AEIGTCLQKA 194 (431)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHc
Confidence 9999999876
No 69
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.80 E-value=1.2e-18 Score=196.64 Aligned_cols=133 Identities=23% Similarity=0.220 Sum_probs=113.7
Q ss_pred HCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHH
Q 008605 285 RQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (560)
Q Consensus 285 ~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~ 364 (560)
.+|| .|+++|..++|.++.|+ |+.++||+|||++|.+|++.... .+..++||+||++||.|.++.
T Consensus 75 ~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL------------~G~qv~VvTPTreLA~Qdae~ 139 (997)
T 2ipc_A 75 YLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNAL------------TGKGVHVVTVNDYLARRDAEW 139 (997)
T ss_dssp HTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHT------------TCSCCEEEESSHHHHHHHHHH
T ss_pred HhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHH------------hCCCEEEEeCCHHHHHHHHHH
Confidence 3699 99999999999999998 99999999999999999965442 234699999999999999999
Q ss_pred HHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHH-HHHHHhcc------ccCC---CccEEEEccccccCC
Q 008605 365 CRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF-MFLIKEGI------LQLI---NLRCAILDEVDILFN 434 (560)
Q Consensus 365 l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L-~~ll~~~~------~~l~---~l~~LViDEah~ll~ 434 (560)
+..+..+ .++++.+++||.+.... ....+++|+|+||++| .++++.+. +.+. .+.++||||+|.|+.
T Consensus 140 m~~l~~~-lGLsv~~i~Gg~~~~~r--~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLi 216 (997)
T 2ipc_A 140 MGPVYRG-LGLSVGVIQHASTPAER--RKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILI 216 (997)
T ss_dssp HHHHHHT-TTCCEEECCTTCCHHHH--HHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTT
T ss_pred HHHHHHh-cCCeEEEEeCCCCHHHH--HHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHH
Confidence 9999885 68999999999875433 3334699999999999 78888763 4577 899999999999874
Q ss_pred C
Q 008605 435 D 435 (560)
Q Consensus 435 d 435 (560)
+
T Consensus 217 D 217 (997)
T 2ipc_A 217 D 217 (997)
T ss_dssp S
T ss_pred h
Confidence 3
No 70
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.80 E-value=7e-20 Score=198.39 Aligned_cols=198 Identities=18% Similarity=0.090 Sum_probs=123.2
Q ss_pred HHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEE
Q 008605 299 FPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSM 378 (560)
Q Consensus 299 ip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~ 378 (560)
..++..++++++++|||||||++|++|+++.+.. .++++||++||++|+.|+++.++.+ .+.
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~-----------~~~~~lvl~Ptr~La~Q~~~~l~g~-------~v~ 76 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ-----------QRLRTAVLAPTRVVAAEMAEALRGL-------PVR 76 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH-----------TTCCEEEEECSHHHHHHHHHHTTTS-------CEE
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh-----------CCCcEEEECchHHHHHHHHHHhcCc-------eEe
Confidence 3345678999999999999999999999988764 2568999999999999999988632 222
Q ss_pred EEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCCChHHHHHHHHhh-CCCCCcEEE
Q 008605 379 VVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS-SPVTAQYLF 457 (560)
Q Consensus 379 ~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~l~~Il~~-~~~~~Q~Il 457 (560)
...+..... -..+..+.++|.+.+...+... ..+.++++|||||||++. ..+...+..+... .....|+++
T Consensus 77 ~~~~~~~~~-----~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~--~~~~~~~~~~~~~~~~~~~~~il 148 (459)
T 2z83_A 77 YQTSAVQRE-----HQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTD--PASIAARGYIATKVELGEAAAIF 148 (459)
T ss_dssp ECC-------------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCS--HHHHHHHHHHHHHHHTTSCEEEE
T ss_pred EEecccccC-----CCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCC--chhhHHHHHHHHHhccCCccEEE
Confidence 111111100 1123457788888887666543 468899999999999852 1111111112111 135789999
Q ss_pred EeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCCCCCCChhhhhhhHHHHHHHHHHhCCCCcEEEEeC
Q 008605 458 VTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCN 537 (560)
Q Consensus 458 lSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~K~~~L~~lL~~~~~~ktIIFcn 537 (560)
||||++..+..+... ..+.... ...+.... ...+..++... .+++||||+
T Consensus 149 ~SAT~~~~~~~~~~~--~~pi~~~--------------~~~~~~~~-------------~~~~~~~l~~~-~~~~LVF~~ 198 (459)
T 2z83_A 149 MTATPPGTTDPFPDS--NAPIHDL--------------QDEIPDRA-------------WSSGYEWITEY-AGKTVWFVA 198 (459)
T ss_dssp ECSSCTTCCCSSCCC--SSCEEEE--------------ECCCCSSC-------------CSSCCHHHHHC-CSCEEEECS
T ss_pred EEcCCCcchhhhccC--CCCeEEe--------------cccCCcch-------------hHHHHHHHHhc-CCCEEEEeC
Confidence 999998653211000 0111110 00111100 01112233333 479999999
Q ss_pred chHHHHHHHHHHHhh
Q 008605 538 KVCFSYKCNNLFGFF 552 (560)
Q Consensus 538 S~~~a~~la~~Lk~l 552 (560)
++++|+.+++.|+..
T Consensus 199 s~~~~~~l~~~L~~~ 213 (459)
T 2z83_A 199 SVKMGNEIAMCLQRA 213 (459)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHhc
Confidence 999999999999876
No 71
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.75 E-value=5.4e-18 Score=198.77 Aligned_cols=166 Identities=17% Similarity=0.124 Sum_probs=122.2
Q ss_pred HHHHHHHHHCC-------CCCChHHHHHHHHHHHc--------------CCcEEEEcCCCCcchhhcHHHHHHHHHHHHh
Q 008605 277 DYMIESLKRQN-------FLRPSQIQAMAFPPVVE--------------GKSCILADQSGSGKTLAYLLPVIQRLRQEEL 335 (560)
Q Consensus 277 ~~ll~~L~~~g-------~~~pt~iQ~~aip~il~--------------g~dvlv~apTGSGKTla~llpil~~l~~~~~ 335 (560)
+.++..|..+- ...|+++|.+|++.++. +++.+++++||||||+++ ++++..+..
T Consensus 251 ~~ll~~l~~f~~~~~~~~~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~--- 326 (1038)
T 2w00_A 251 HTLLNVLVNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATE--- 326 (1038)
T ss_dssp HHHHHHHHHSEEECTTCCEEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTT---
T ss_pred HHHHHHHHhheeeccccccccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHh---
Confidence 44555555541 23599999999999875 368999999999999997 666644421
Q ss_pred hccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhc-CCCcEEEECHHHHHHHHHhc
Q 008605 336 QGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ-EGVDVLIATPGRFMFLIKEG 414 (560)
Q Consensus 336 ~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~-~~~~IlV~TP~~L~~ll~~~ 414 (560)
.....++|||+|+++|+.|+.+.+..+... .+.++.........+. .+++|+|+||++|..++...
T Consensus 327 ------~~~~~rvLvlvpr~eL~~Q~~~~f~~f~~~-------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~ 393 (1038)
T 2w00_A 327 ------LDFIDKVFFVVDRKDLDYQTMKEYQRFSPD-------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAE 393 (1038)
T ss_dssp ------CTTCCEEEEEECGGGCCHHHHHHHHTTSTT-------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHC
T ss_pred ------cCCCceEEEEeCcHHHHHHHHHHHHHhccc-------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcc
Confidence 123468999999999999999999887642 1234444455555553 56899999999999887653
Q ss_pred c--ccCCCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCH
Q 008605 415 I--LQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPV 464 (560)
Q Consensus 415 ~--~~l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~ 464 (560)
. ..+....+||+||||++. +......|...++ +.++++||||+..
T Consensus 394 ~~~~~~~~~~lvIiDEAHrs~----~~~~~~~I~~~~p-~a~~lgfTATP~~ 440 (1038)
T 2w00_A 394 SDLPVYNQQVVFIFDECHRSQ----FGEAQKNLKKKFK-RYYQFGFTGTPIF 440 (1038)
T ss_dssp CCCGGGGSCEEEEEESCCTTH----HHHHHHHHHHHCS-SEEEEEEESSCCC
T ss_pred cchhccccccEEEEEccchhc----chHHHHHHHHhCC-cccEEEEeCCccc
Confidence 2 235577899999999976 3344567777775 5799999999864
No 72
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.74 E-value=2.7e-17 Score=162.71 Aligned_cols=139 Identities=21% Similarity=0.138 Sum_probs=110.0
Q ss_pred CCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhh
Q 008605 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (560)
Q Consensus 289 ~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l 368 (560)
..|+++|.+++..++.++++++++|||+|||++++.++... +.++||++|+++|+.|+.+.+.++
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~---------------~~~~liv~P~~~L~~q~~~~~~~~ 156 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---------------STPTLIVVPTLALAEQWKERLGIF 156 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS---------------CSCEEEEESSHHHHHHHHHHHGGG
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc---------------CCCEEEEeCCHHHHHHHHHHHHhC
Confidence 37999999999999999999999999999999988776532 346999999999999999999884
Q ss_pred hcCCCCce-EEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCCChHHHHHHHHh
Q 008605 369 SKCGVPFR-SMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447 (560)
Q Consensus 369 ~~~~~~i~-v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~l~~Il~ 447 (560)
++. +..+.|+... ..+|+|+|++.+...... ....+++|||||||++. +..+. .++.
T Consensus 157 -----~~~~v~~~~g~~~~---------~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l~-~~~~~----~i~~ 214 (237)
T 2fz4_A 157 -----GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLP-AESYV----QIAQ 214 (237)
T ss_dssp -----CGGGEEEESSSCBC---------CCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCC-TTTHH----HHHH
T ss_pred -----CCCeEEEEeCCCCC---------cCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccCC-ChHHH----HHHH
Confidence 356 7777776542 479999999998765542 12458999999999998 55554 3455
Q ss_pred hCCCCCcEEEEeccCCHH
Q 008605 448 SSPVTAQYLFVTATLPVE 465 (560)
Q Consensus 448 ~~~~~~Q~IllSATlp~~ 465 (560)
.++ ..+++++|||++..
T Consensus 215 ~~~-~~~~l~LSATp~r~ 231 (237)
T 2fz4_A 215 MSI-APFRLGLTATFERE 231 (237)
T ss_dssp TCC-CSEEEEEEESCC--
T ss_pred hcc-CCEEEEEecCCCCC
Confidence 554 67899999999864
No 73
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.68 E-value=1e-16 Score=180.82 Aligned_cols=219 Identities=14% Similarity=0.077 Sum_probs=142.1
Q ss_pred cccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEE
Q 008605 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRV 348 (560)
Q Consensus 269 sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~a 348 (560)
+|..+. ..+.++++.++. .|..++ .....+.+++++++||||||||+ +++..+... ..+
T Consensus 124 ~fp~~e-~~d~l~~i~dl~--~p~~~~--p~ar~l~rk~vlv~apTGSGKT~----~al~~l~~~------------~~g 182 (677)
T 3rc3_A 124 IFPVLD-CKDDLRKISDLR--IPPNWY--PDARAMQRKIIFHSGPTNSGKTY----HAIQKYFSA------------KSG 182 (677)
T ss_dssp HCGGGG-CHHHHHHHTBCC--CGGGGC--HHHHTSCCEEEEEECCTTSSHHH----HHHHHHHHS------------SSE
T ss_pred hCCCcC-CHHHHHHHhhcc--ChhhhC--HHHHhcCCCEEEEEcCCCCCHHH----HHHHHHHhc------------CCe
Confidence 444444 455556665443 344432 23345688999999999999998 455555432 236
Q ss_pred EEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEcc
Q 008605 349 VILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDE 428 (560)
Q Consensus 349 Lil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDE 428 (560)
+|++|||+||.|+++.++++ ++.+..++|+..... ..-....+++++|++.+. ....+++|||||
T Consensus 183 l~l~PtR~LA~Qi~~~l~~~-----g~~v~lltG~~~~iv--~TpGr~~~il~~T~e~~~--------l~~~v~lvVIDE 247 (677)
T 3rc3_A 183 VYCGPLKLLAHEIFEKSNAA-----GVPCDLVTGEERVTV--QPNGKQASHVSCTVEMCS--------VTTPYEVAVIDE 247 (677)
T ss_dssp EEEESSHHHHHHHHHHHHHT-----TCCEEEECSSCEECC--STTCCCCSEEEEEGGGCC--------SSSCEEEEEECS
T ss_pred EEEeCHHHHHHHHHHHHHhc-----CCcEEEEECCeeEEe--cCCCcccceeEecHhHhh--------hcccCCEEEEec
Confidence 99999999999999999876 457888888865411 000123678888876542 346789999999
Q ss_pred ccccCCCCChHHHHHHHHhhCC-CCCcEEEEeccCCHHHHHHHHHhCCCCeEEeCCCccccCCCceeEEEEcCCCCCCCC
Q 008605 429 VDILFNDEDFEVALQSLISSSP-VTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507 (560)
Q Consensus 429 ah~ll~d~~f~~~l~~Il~~~~-~~~Q~IllSATlp~~v~~~l~~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~~~~ 507 (560)
||+++ +.+|+..+..++..++ ...|++++|||.+ ....+.........+... .... ...+....
T Consensus 248 aH~l~-d~~~g~~~~~~l~~l~~~~i~il~~SAT~~--~i~~l~~~~~~~~~v~~~-~r~~-----~l~~~~~~------ 312 (677)
T 3rc3_A 248 IQMIR-DPARGWAWTRALLGLCAEEVHLCGEPAAID--LVMELMYTTGEEVEVRDY-KRLT-----PISVLDHA------ 312 (677)
T ss_dssp GGGGG-CTTTHHHHHHHHHHCCEEEEEEEECGGGHH--HHHHHHHHHTCCEEEEEC-CCSS-----CEEECSSC------
T ss_pred ceecC-CccchHHHHHHHHccCccceEEEeccchHH--HHHHHHHhcCCceEEEEe-eecc-----hHHHHHHH------
Confidence 99998 8899999999888887 7789999999953 233344443333322111 0000 01110000
Q ss_pred ChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhh
Q 008605 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFF 552 (560)
Q Consensus 508 ~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l 552 (560)
+ ..+... ....||||+++++|+.+++.|+..
T Consensus 313 ------------l-~~l~~~-~~g~iIf~~s~~~ie~la~~L~~~ 343 (677)
T 3rc3_A 313 ------------L-ESLDNL-RPGDCIVCFSKNDIYSVSRQIEIR 343 (677)
T ss_dssp ------------C-CSGGGC-CTTEEEECSSHHHHHHHHHHHHHT
T ss_pred ------------H-HHHHhc-CCCCEEEEcCHHHHHHHHHHHHhc
Confidence 0 011122 245699999999999999999875
No 74
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.65 E-value=1.4e-15 Score=165.41 Aligned_cols=148 Identities=16% Similarity=0.184 Sum_probs=105.5
Q ss_pred CChHHHHHHHHHH----HcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHH
Q 008605 290 RPSQIQAMAFPPV----VEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (560)
Q Consensus 290 ~pt~iQ~~aip~i----l~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l 365 (560)
.|+|+|.+++..+ ..++++|++.+||+|||+.++. ++..+... ....++||||| .+|+.|+.+++
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~-~i~~~~~~---------~~~~~~LIv~P-~~l~~qw~~e~ 105 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIA-VFSDAKKE---------NELTPSLVICP-LSVLKNWEEEL 105 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHH-HHHHHHHT---------TCCSSEEEEEC-STTHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHH-HHHHHHhc---------CCCCCEEEEcc-HHHHHHHHHHH
Confidence 6999999999876 3578999999999999999654 44444322 22457999999 46999999999
Q ss_pred HhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCCChHHHHHHH
Q 008605 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445 (560)
Q Consensus 366 ~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~l~~I 445 (560)
+++. ..+++..+.|+... ......+|+|+|++.+..... +....+++||+||||++. +.. ......
T Consensus 106 ~~~~---~~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~k-n~~--~~~~~~ 171 (500)
T 1z63_A 106 SKFA---PHLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIK-NPQ--TKIFKA 171 (500)
T ss_dssp HHHC---TTSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGS-CTT--SHHHHH
T ss_pred HHHC---CCceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccC-CHh--HHHHHH
Confidence 9885 35677777666532 112347999999999865433 233467899999999997 332 122333
Q ss_pred HhhCCCCCcEEEEeccCC
Q 008605 446 ISSSPVTAQYLFVTATLP 463 (560)
Q Consensus 446 l~~~~~~~Q~IllSATlp 463 (560)
+..++ ..+.+++|||+.
T Consensus 172 l~~l~-~~~~l~LTaTP~ 188 (500)
T 1z63_A 172 VKELK-SKYRIALTGTPI 188 (500)
T ss_dssp HHTSC-EEEEEEECSSCS
T ss_pred HHhhc-cCcEEEEecCCC
Confidence 44443 457899999983
No 75
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.59 E-value=6.1e-15 Score=173.08 Aligned_cols=158 Identities=20% Similarity=0.119 Sum_probs=104.7
Q ss_pred CCChHHHHHHHHHHHc--CCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Q 008605 289 LRPSQIQAMAFPPVVE--GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (560)
Q Consensus 289 ~~pt~iQ~~aip~il~--g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~ 366 (560)
..|+|+|.+++..++. +.++|++++||+|||++++..+...+.. ....++|||||+ .|+.|+...+.
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~----------g~~~rvLIVvP~-sLl~Qw~~E~~ 220 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS----------GAAERVLIIVPE-TLQHQWLVEML 220 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT----------SSCCCEEEECCT-TTHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh----------CCCCeEEEEeCH-HHHHHHHHHHH
Confidence 3699999999988876 3479999999999999987776655532 123469999999 99999999997
Q ss_pred hhhcCCCCceEEEEeCCcchHHHHHH---hcCCCcEEEECHHHHHHHHHh-ccccCCCccEEEEccccccCCCCCh-HHH
Q 008605 367 SLSKCGVPFRSMVVTGGFRQKTQLEN---LQEGVDVLIATPGRFMFLIKE-GILQLINLRCAILDEVDILFNDEDF-EVA 441 (560)
Q Consensus 367 ~l~~~~~~i~v~~l~gg~~~~~~~~~---l~~~~~IlV~TP~~L~~ll~~-~~~~l~~l~~LViDEah~ll~d~~f-~~~ 441 (560)
+.+ ++.+..+.|+... ..... .....+|+|+|++.+...... ..+....+++|||||||++.+.... ...
T Consensus 221 ~~f----~l~v~v~~~~~~~-~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~ 295 (968)
T 3dmq_A 221 RRF----NLRFALFDDERYA-EAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSRE 295 (968)
T ss_dssp HHS----CCCCEECCHHHHH-HHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHH
T ss_pred HHh----CCCEEEEccchhh-hhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHH
Confidence 654 2444444433221 11111 113479999999988532111 1233457899999999999732221 111
Q ss_pred HHHHHhhCCCCCcEEEEeccC
Q 008605 442 LQSLISSSPVTAQYLFVTATL 462 (560)
Q Consensus 442 l~~Il~~~~~~~Q~IllSATl 462 (560)
.+.+........+++++|||+
T Consensus 296 ~~~l~~L~~~~~~~L~LTATP 316 (968)
T 3dmq_A 296 YQAIEQLAEHVPGVLLLTATP 316 (968)
T ss_dssp HHHHHHHHTTCSSEEESCSSC
T ss_pred HHHHHHHhhcCCcEEEEEcCC
Confidence 222222222455799999997
No 76
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.55 E-value=1.5e-14 Score=159.88 Aligned_cols=129 Identities=17% Similarity=0.139 Sum_probs=99.8
Q ss_pred CChHHHHHHHHH----HHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHH
Q 008605 290 RPSQIQAMAFPP----VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (560)
Q Consensus 290 ~pt~iQ~~aip~----il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l 365 (560)
.|+|.|.+++.. +..|+++++.||||+|||++|++|++.. ++++||++||++|+.|+.+.+
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~---------------~~~v~i~~pt~~l~~q~~~~~ 67 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV---------------KPKVLFVVRTHNEFYPIYRDL 67 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH---------------CSEEEEEESSGGGHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC---------------CCeEEEEcCCHHHHHHHHHHH
Confidence 689999997764 4579999999999999999999999971 458999999999999999999
Q ss_pred HhhhcCCCCceEEEEeCCcch---------------------------------HHHH------------------HHhc
Q 008605 366 RSLSKCGVPFRSMVVTGGFRQ---------------------------------KTQL------------------ENLQ 394 (560)
Q Consensus 366 ~~l~~~~~~i~v~~l~gg~~~---------------------------------~~~~------------------~~l~ 394 (560)
..+... .++++..+.|.... .... +...
T Consensus 68 ~~l~~~-~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~ 146 (551)
T 3crv_A 68 TKIREK-RNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSL 146 (551)
T ss_dssp TTCCCS-SCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHG
T ss_pred HHHhhh-cCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhh
Confidence 988664 36777777763321 1111 2223
Q ss_pred CCCcEEEECHHHHHHHHHhccccC-CCccEEEEccccccCC
Q 008605 395 EGVDVLIATPGRFMFLIKEGILQL-INLRCAILDEVDILFN 434 (560)
Q Consensus 395 ~~~~IlV~TP~~L~~ll~~~~~~l-~~l~~LViDEah~ll~ 434 (560)
..++|||+|+..|++...+..+.+ ....++||||||.|.+
T Consensus 147 ~~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 147 YKADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp GGCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred hcCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 468999999999997654443322 4677899999999873
No 77
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.49 E-value=4.2e-13 Score=154.73 Aligned_cols=155 Identities=19% Similarity=0.198 Sum_probs=110.0
Q ss_pred CCChHHHHHHHHHHH----cCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHH
Q 008605 289 LRPSQIQAMAFPPVV----EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (560)
Q Consensus 289 ~~pt~iQ~~aip~il----~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~ 364 (560)
..++++|.+++..++ .+++.|++.+||.|||+..+..+...+... .....+||||| ..|+.|..+.
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~---------~~~~~~LIV~P-~sll~qW~~E 304 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFAR---------RQNGPHIIVVP-LSTMPAWLDT 304 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHH---------SCCSCEEEECC-TTTHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhc---------CCCCCEEEEEC-chHHHHHHHH
Confidence 378999999998665 788999999999999998766555444332 12345899999 7788999999
Q ss_pred HHhhhcCCCCceEEEEeCCcchHHHHHHh------------cCCCcEEEECHHHHHHHHHhccccCCCccEEEEcccccc
Q 008605 365 CRSLSKCGVPFRSMVVTGGFRQKTQLENL------------QEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDIL 432 (560)
Q Consensus 365 l~~l~~~~~~i~v~~l~gg~~~~~~~~~l------------~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~l 432 (560)
+.++. ..+++.+++|+.......... ....+|+|+|++.+...... +.....++|||||||++
T Consensus 305 ~~~~~---p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~l 379 (800)
T 3mwy_W 305 FEKWA---PDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRL 379 (800)
T ss_dssp HHHHS---TTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGG
T ss_pred HHHHC---CCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhh
Confidence 98875 467888888877655443322 23478999999999754332 22235789999999999
Q ss_pred CCCCChHHHHHHHHhhCCCCCcEEEEeccC
Q 008605 433 FNDEDFEVALQSLISSSPVTAQYLFVTATL 462 (560)
Q Consensus 433 l~d~~f~~~l~~Il~~~~~~~Q~IllSATl 462 (560)
-+ .. ..+...+..+. ....+++|||+
T Consensus 380 kn-~~--s~~~~~l~~l~-~~~rl~LTgTP 405 (800)
T 3mwy_W 380 KN-AE--SSLYESLNSFK-VANRMLITGTP 405 (800)
T ss_dssp CC-SS--SHHHHHHTTSE-EEEEEEECSCC
T ss_pred cC-ch--hHHHHHHHHhh-hccEEEeeCCc
Confidence 62 21 22333444443 44568899998
No 78
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.46 E-value=9.5e-14 Score=153.22 Aligned_cols=127 Identities=19% Similarity=0.187 Sum_probs=86.7
Q ss_pred CCCCCChHHHHHHHHH----HHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHH
Q 008605 286 QNFLRPSQIQAMAFPP----VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQV 361 (560)
Q Consensus 286 ~g~~~pt~iQ~~aip~----il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi 361 (560)
.|| .|+++|.+++.. +..|+++++.||||+|||++|++|++.. ++++||++||++|+.|+
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~---------------~~~~~~~~~t~~l~~q~ 67 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL---------------KKKVLIFTRTHSQLDSI 67 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH---------------TCEEEEEESCHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC---------------CCcEEEEcCCHHHHHHH
Confidence 467 899999998654 5688999999999999999999998642 35799999999999999
Q ss_pred HHHHHhhhcCCCCceEEEEeCCcc-----------------------------------------------hHHHHHHhc
Q 008605 362 LSNCRSLSKCGVPFRSMVVTGGFR-----------------------------------------------QKTQLENLQ 394 (560)
Q Consensus 362 ~~~l~~l~~~~~~i~v~~l~gg~~-----------------------------------------------~~~~~~~l~ 394 (560)
.+.+..+. +++..+.|... .....+...
T Consensus 68 ~~~~~~l~-----~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~ 142 (540)
T 2vl7_A 68 YKNAKLLG-----LKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANL 142 (540)
T ss_dssp HHHHGGGT-----CCEEEC---------------------------------------------------------CTTG
T ss_pred HHHHHhcC-----CcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHh
Confidence 99888752 23333322110 000001112
Q ss_pred CCCcEEEECHHHHHHHHHhccc-------cCCCccEEEEccccccC
Q 008605 395 EGVDVLIATPGRFMFLIKEGIL-------QLINLRCAILDEVDILF 433 (560)
Q Consensus 395 ~~~~IlV~TP~~L~~ll~~~~~-------~l~~l~~LViDEah~ll 433 (560)
..++|+|+|+..|++....+.+ .+....++||||||.|.
T Consensus 143 ~~adiVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 143 KDKDVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp GGCSEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred hcCCEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 3579999999999865433222 24567899999999984
No 79
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.41 E-value=1.7e-11 Score=137.90 Aligned_cols=159 Identities=19% Similarity=0.258 Sum_probs=106.8
Q ss_pred CChHHHHHHHHHHH---------cCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHH
Q 008605 290 RPSQIQAMAFPPVV---------EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQ 360 (560)
Q Consensus 290 ~pt~iQ~~aip~il---------~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Q 360 (560)
.+.|+|.+++..+. .+...|+..+||+|||+.++..+...+.... .......++|||+|+ +|+.|
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~-----~~~p~~~~~LiV~P~-sll~q 128 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSP-----DCKPEIDKVIVVSPS-SLVRN 128 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCT-----TSSCSCSCEEEEECH-HHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCc-----cccCCCCcEEEEecH-HHHHH
Confidence 68999999998874 4567999999999999997766655443211 111223469999996 89999
Q ss_pred HHHHHHhhhcCCCCceEEEEeCCcchHH--HHHHh-c-----CCCcEEEECHHHHHHHHHhccccCCCccEEEEcccccc
Q 008605 361 VLSNCRSLSKCGVPFRSMVVTGGFRQKT--QLENL-Q-----EGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDIL 432 (560)
Q Consensus 361 i~~~l~~l~~~~~~i~v~~l~gg~~~~~--~~~~l-~-----~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~l 432 (560)
..+++.++... .+.+..++++..... ..... . ...+|+|+|++.+.... ..+....+++||+||||++
T Consensus 129 W~~E~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~vI~DEaH~i 204 (644)
T 1z3i_X 129 WYNEVGKWLGG--RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA--EVLHKGKVGLVICDEGHRL 204 (644)
T ss_dssp HHHHHHHHHGG--GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT--TTTTTSCCCEEEETTGGGC
T ss_pred HHHHHHHHcCC--CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH--HHhhcCCccEEEEECceec
Confidence 99999988652 466677777654321 11111 1 13789999999886543 2333456789999999999
Q ss_pred CCCCChHHHHHHHHhhCCCCCcEEEEeccC
Q 008605 433 FNDEDFEVALQSLISSSPVTAQYLFVTATL 462 (560)
Q Consensus 433 l~d~~f~~~l~~Il~~~~~~~Q~IllSATl 462 (560)
- +.. ....+.+. .+. ....+++|||+
T Consensus 205 k-n~~-~~~~~al~-~l~-~~~rl~LTgTP 230 (644)
T 1z3i_X 205 K-NSD-NQTYLALN-SMN-AQRRVLISGTP 230 (644)
T ss_dssp C-TTC-HHHHHHHH-HHC-CSEEEEECSSC
T ss_pred C-Chh-hHHHHHHH-hcc-cCcEEEEecCc
Confidence 7 322 22223332 232 45679999997
No 80
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.41 E-value=6.5e-12 Score=140.01 Aligned_cols=130 Identities=23% Similarity=0.231 Sum_probs=99.1
Q ss_pred CCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHH
Q 008605 286 QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (560)
Q Consensus 286 ~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l 365 (560)
+|. .|+++|....-.+..|+ |..+.||+|||+++.+|++-..+. +..+.||+|++.||.|-++.+
T Consensus 72 lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~------------G~~vhVvT~ndyLA~rdae~m 136 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI------------GKGVHLVTVNDYLARRDALWM 136 (822)
T ss_dssp TSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT------------SSCEEEEESSHHHHHHHHHHH
T ss_pred hCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc------------CCceEEEeccHHHHHhHHHHH
Confidence 455 69999999998888887 899999999999999999855432 456999999999999999999
Q ss_pred HhhhcCCCCceEEEEeCC--------------------------------------------------cchHHHHHHhcC
Q 008605 366 RSLSKCGVPFRSMVVTGG--------------------------------------------------FRQKTQLENLQE 395 (560)
Q Consensus 366 ~~l~~~~~~i~v~~l~gg--------------------------------------------------~~~~~~~~~l~~ 395 (560)
..+..+ .++.+.+++.. ....+.... -
T Consensus 137 ~~l~~~-Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~a--Y 213 (822)
T 3jux_A 137 GPVYLF-LGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEA--Y 213 (822)
T ss_dssp HHHHHH-TTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHH--H
T ss_pred HHHHHH-hCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHH--h
Confidence 999886 68899888872 111111111 1
Q ss_pred CCcEEEECHHHHH-HHHHhcc------ccCCCccEEEEccccccC
Q 008605 396 GVDVLIATPGRFM-FLIKEGI------LQLINLRCAILDEVDILF 433 (560)
Q Consensus 396 ~~~IlV~TP~~L~-~ll~~~~------~~l~~l~~LViDEah~ll 433 (560)
.|||..+|..-+- +.|+.+. .....+.+.||||+|.++
T Consensus 214 ~~DItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiL 258 (822)
T 3jux_A 214 LCDVTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVL 258 (822)
T ss_dssp HSSEEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHH
T ss_pred cCCCEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEeccccee
Confidence 3899999998875 5555432 124568899999999544
No 81
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.19 E-value=6e-11 Score=132.87 Aligned_cols=82 Identities=27% Similarity=0.340 Sum_probs=67.2
Q ss_pred CChHHHHHHHH----HHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHH
Q 008605 290 RPSQIQAMAFP----PVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (560)
Q Consensus 290 ~pt~iQ~~aip----~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l 365 (560)
.|++.|.+.+. ++.+|+++++.||||+|||++|++|++..+... +.+++|++||++|+.|+.+.+
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~-----------~~kvli~t~T~~l~~Qi~~el 71 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER-----------KLKVLYLVRTNSQEEQVIKEL 71 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH-----------TCEEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc-----------CCeEEEECCCHHHHHHHHHHH
Confidence 68899988875 456899999999999999999999999987643 468999999999999999999
Q ss_pred HhhhcCCCCceEEEEeCC
Q 008605 366 RSLSKCGVPFRSMVVTGG 383 (560)
Q Consensus 366 ~~l~~~~~~i~v~~l~gg 383 (560)
+.+... ..+++..+.|+
T Consensus 72 ~~l~~~-~~~~~~~l~gr 88 (620)
T 4a15_A 72 RSLSST-MKIRAIPMQGR 88 (620)
T ss_dssp HHHHHH-SCCCEEECCCH
T ss_pred HHHhhc-cCeEEEEEECC
Confidence 888653 35666666554
No 82
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=98.78 E-value=5.2e-08 Score=109.92 Aligned_cols=67 Identities=31% Similarity=0.421 Sum_probs=51.4
Q ss_pred CCCCChHHHHHHHHHHH----cCC-cEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHH
Q 008605 287 NFLRPSQIQAMAFPPVV----EGK-SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQV 361 (560)
Q Consensus 287 g~~~pt~iQ~~aip~il----~g~-dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi 361 (560)
+| .|++.|.++|..+. .|. ..++.+.||||||+++.- ++... +..+|||+|+..+|.|+
T Consensus 6 ~~-~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~-~~~~~--------------~~~~lvv~~~~~~A~ql 69 (664)
T 1c4o_A 6 GP-SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAK-VIEAL--------------GRPALVLAPNKILAAQL 69 (664)
T ss_dssp SC-CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHH--------------TCCEEEEESSHHHHHHH
T ss_pred CC-CCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHH-HHHHh--------------CCCEEEEecCHHHHHHH
Confidence 56 89999999987655 343 467889999999987542 22222 11399999999999999
Q ss_pred HHHHHhhh
Q 008605 362 LSNCRSLS 369 (560)
Q Consensus 362 ~~~l~~l~ 369 (560)
+..++.+.
T Consensus 70 ~~el~~~~ 77 (664)
T 1c4o_A 70 AAEFRELF 77 (664)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHC
Confidence 99999985
No 83
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.73 E-value=1.5e-08 Score=113.22 Aligned_cols=145 Identities=19% Similarity=0.294 Sum_probs=90.5
Q ss_pred hHHHHHHHHHHHcCCcEEEEcCCCCcch--hhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhh
Q 008605 292 SQIQAMAFPPVVEGKSCILADQSGSGKT--LAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (560)
Q Consensus 292 t~iQ~~aip~il~g~dvlv~apTGSGKT--la~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~ 369 (560)
+++|++|++.++.++.+++.+++||||| ++++++.+..+. ...+.++++++||..+|.++.+.+....
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~----------~~~~~~vll~APTg~AA~~L~e~~~~~~ 220 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMA----------DGERCRIRLAAPTGKAAARLTESLGKAL 220 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTC----------SSCCCCEEEEBSSHHHHHHHHHHHTHHH
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhh----------hcCCCeEEEEeCChhHHHHHHHHHHHHH
Confidence 7899999999999999999999999999 666777665431 1235689999999999999988876654
Q ss_pred cCCCCceEEEEeCCcchHHHHHHhcCCCc-EEEECHHHHHHHHHhccccCCCccEEEEccccccCCCCChHHHHHHHHhh
Q 008605 370 KCGVPFRSMVVTGGFRQKTQLENLQEGVD-VLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448 (560)
Q Consensus 370 ~~~~~i~v~~l~gg~~~~~~~~~l~~~~~-IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~l~~Il~~ 448 (560)
.. .++..... .+.. ... ...+ ++-.+|+.. . +.........+++||||||+ |+ + ...+..|+..
T Consensus 221 ~~-l~l~~~~~-~~~~--~~~----~Tih~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAs-ml-~---~~~~~~Ll~~ 285 (608)
T 1w36_D 221 RQ-LPLTDEQK-KRIP--EDA----STLHRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEAS-MI-D---LPMMSRLIDA 285 (608)
T ss_dssp HH-SSCCSCCC-CSCS--CCC----BTTTSCC-------------CTTSCCSCSEEEECSGG-GC-B---HHHHHHHHHT
T ss_pred hc-CCCCHHHH-hccc--hhh----hhhHhhhccCCCch-H-HHhccCCCCCCCEEEEechh-hC-C---HHHHHHHHHh
Confidence 31 11110000 0000 000 0011 222233321 1 11222223378999999999 55 3 4677888999
Q ss_pred CCCCCcEEEEecc
Q 008605 449 SPVTAQYLFVTAT 461 (560)
Q Consensus 449 ~~~~~Q~IllSAT 461 (560)
++...|+|++.-.
T Consensus 286 l~~~~~liLvGD~ 298 (608)
T 1w36_D 286 LPDHARVIFLGDR 298 (608)
T ss_dssp CCTTCEEEEEECT
T ss_pred CCCCCEEEEEcch
Confidence 9989999998643
No 84
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=98.49 E-value=9.3e-07 Score=99.63 Aligned_cols=66 Identities=27% Similarity=0.394 Sum_probs=49.0
Q ss_pred CChHHHHHHHHHHH----cCC-cEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHH
Q 008605 290 RPSQIQAMAFPPVV----EGK-SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (560)
Q Consensus 290 ~pt~iQ~~aip~il----~g~-dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~ 364 (560)
.|+..|..+|..+. .|. ..++.+-||||||++..- ++... ...+|||+|+..+|.|++..
T Consensus 12 ~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~-~~~~~--------------~~~~lvv~~~~~~A~~l~~e 76 (661)
T 2d7d_A 12 QPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSN-LIKEV--------------NKPTLVIAHNKTLAGQLYSE 76 (661)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHH--------------CCCEEEECSSHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHH-HHHHh--------------CCCEEEEECCHHHHHHHHHH
Confidence 68888988887654 343 467889999999976432 22221 11389999999999999999
Q ss_pred HHhhhc
Q 008605 365 CRSLSK 370 (560)
Q Consensus 365 l~~l~~ 370 (560)
++.+..
T Consensus 77 l~~~~~ 82 (661)
T 2d7d_A 77 FKEFFP 82 (661)
T ss_dssp HHHHCT
T ss_pred HHHHcC
Confidence 999853
No 85
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.82 E-value=7.2e-05 Score=80.41 Aligned_cols=134 Identities=19% Similarity=0.212 Sum_probs=79.5
Q ss_pred HCCCCCChHHHHHHHHHHHcC----C-cEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHH
Q 008605 285 RQNFLRPSQIQAMAFPPVVEG----K-SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELAS 359 (560)
Q Consensus 285 ~~g~~~pt~iQ~~aip~il~g----~-dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~ 359 (560)
-+.|..+++-|.+|+..++.. . .++|.|+.|||||... ..++..+.... ...+++++||...+.
T Consensus 20 p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~~----------~~~il~~a~T~~Aa~ 88 (459)
T 3upu_A 20 HMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALISTG----------ETGIILAAPTHAAKK 88 (459)
T ss_dssp -CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHTT----------CCCEEEEESSHHHHH
T ss_pred CCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhcC----------CceEEEecCcHHHHH
Confidence 356788999999999876532 3 8999999999999653 44455554321 136899999998887
Q ss_pred HHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhc----CCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCC
Q 008605 360 QVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ----EGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFND 435 (560)
Q Consensus 360 Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~----~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d 435 (560)
.+...+.. .+..++ ... .+. .....+.. .....+...++|||||++.+.
T Consensus 89 ~l~~~~~~--------~~~T~h------~~~-~~~~~~~~~~~~~~~----------~~~~~~~~~~~iiiDE~~~~~-- 141 (459)
T 3upu_A 89 ILSKLSGK--------EASTIH------SIL-KINPVTYEENVLFEQ----------KEVPDLAKCRVLICDEVSMYD-- 141 (459)
T ss_dssp HHHHHHSS--------CEEEHH------HHH-TEEEEECSSCEEEEE----------CSCCCCSSCSEEEESCGGGCC--
T ss_pred HHHhhhcc--------chhhHH------HHh-ccCcccccccchhcc----------cccccccCCCEEEEECchhCC--
Confidence 76655411 111100 000 000 00011111 112345678999999999764
Q ss_pred CChHHHHHHHHhhCCCCCcEEEEe
Q 008605 436 EDFEVALQSLISSSPVTAQYLFVT 459 (560)
Q Consensus 436 ~~f~~~l~~Il~~~~~~~Q~IllS 459 (560)
...+..++..++...+++++.
T Consensus 142 ---~~~~~~l~~~~~~~~~~~~vG 162 (459)
T 3upu_A 142 ---RKLFKILLSTIPPWCTIIGIG 162 (459)
T ss_dssp ---HHHHHHHHHHSCTTCEEEEEE
T ss_pred ---HHHHHHHHHhccCCCEEEEEC
Confidence 235556666666566666654
No 86
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.80 E-value=9.1e-05 Score=82.03 Aligned_cols=126 Identities=21% Similarity=0.199 Sum_probs=80.6
Q ss_pred CChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhh
Q 008605 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (560)
Q Consensus 290 ~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~ 369 (560)
.+++.|.+|+..++.++.+++.++.|+|||... ..++..+.. .+.++++++||...+.++.+.+..
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~-----------~g~~Vl~~ApT~~Aa~~L~e~~~~-- 254 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTT-KAVADLAES-----------LGLEVGLCAPTGKAARRLGEVTGR-- 254 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHH-HHHHHHHHH-----------TTCCEEEEESSHHHHHHHHHHHTS--
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHH-HHHHHHHHh-----------cCCeEEEecCcHHHHHHhHhhhcc--
Confidence 578999999999999899999999999999753 334433332 245799999999988877654321
Q ss_pred cCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCCChHHHHHHHHhhC
Q 008605 370 KCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449 (560)
Q Consensus 370 ~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~ 449 (560)
.... ... .+. .. |. .+..........++|||||++++- ...+..+++.+
T Consensus 255 ------~a~T------ih~---ll~----~~---~~----~~~~~~~~~~~~dvlIIDEasml~-----~~~~~~Ll~~~ 303 (574)
T 3e1s_A 255 ------TAST------VHR---LLG----YG---PQ----GFRHNHLEPAPYDLLIVDEVSMMG-----DALMLSLLAAV 303 (574)
T ss_dssp ------CEEE------HHH---HTT----EE---TT----EESCSSSSCCSCSEEEECCGGGCC-----HHHHHHHHTTS
T ss_pred ------cHHH------HHH---HHc----CC---cc----hhhhhhcccccCCEEEEcCccCCC-----HHHHHHHHHhC
Confidence 1100 000 000 00 00 001112233467899999999764 24667778888
Q ss_pred CCCCcEEEEec
Q 008605 450 PVTAQYLFVTA 460 (560)
Q Consensus 450 ~~~~Q~IllSA 460 (560)
+...++|++.-
T Consensus 304 ~~~~~lilvGD 314 (574)
T 3e1s_A 304 PPGARVLLVGD 314 (574)
T ss_dssp CTTCEEEEEEC
T ss_pred cCCCEEEEEec
Confidence 87777777644
No 87
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.74 E-value=0.00025 Score=79.30 Aligned_cols=70 Identities=19% Similarity=0.303 Sum_probs=54.5
Q ss_pred CCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHh
Q 008605 288 FLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS 367 (560)
Q Consensus 288 ~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~ 367 (560)
+..+++.|.+|+..++...-++|.+|+|+|||.... .++..+.. ..+.++++++||...+.++.+.+.+
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~-~~i~~l~~----------~~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLAR----------QGNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHH-HHHHHHHT----------SSSCCEEEEESSHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHH-HHHHHHHH----------cCCCeEEEEeCcHHHHHHHHHHHHh
Confidence 346789999999998887788999999999998643 33433332 1355799999999999999888865
Q ss_pred h
Q 008605 368 L 368 (560)
Q Consensus 368 l 368 (560)
.
T Consensus 247 ~ 247 (624)
T 2gk6_A 247 T 247 (624)
T ss_dssp T
T ss_pred c
Confidence 4
No 88
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.73 E-value=0.0003 Score=80.82 Aligned_cols=69 Identities=19% Similarity=0.323 Sum_probs=54.3
Q ss_pred CCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhh
Q 008605 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (560)
Q Consensus 289 ~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l 368 (560)
..+++.|.+|+..++.+.-++|.||.|||||.+.. .++..+... .+.++++++||...+.++.+.+.+.
T Consensus 359 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~-~~i~~l~~~----------~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSA-TIVYHLSKI----------HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHH-HHHHHHHHH----------HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH-HHHHHHHhC----------CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 45789999999999887778999999999997643 333444331 1457999999999999999888765
No 89
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.67 E-value=6.5e-05 Score=84.29 Aligned_cols=67 Identities=18% Similarity=0.174 Sum_probs=52.2
Q ss_pred CChHHHHHHHHHHHcCCc-EEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhh
Q 008605 290 RPSQIQAMAFPPVVEGKS-CILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (560)
Q Consensus 290 ~pt~iQ~~aip~il~g~d-vlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l 368 (560)
.+++-|.+|+..++..++ .||.+|.|||||.+..- ++..+.. .+.++|+++||..-|.++.+.+...
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~-~I~~l~~-----------~~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVE-IILQAVK-----------QGLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHH-HHHHHHH-----------TTCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHH-HHHHHHh-----------CCCeEEEEcCchHHHHHHHHHHHhc
Confidence 578889999999887776 68899999999987443 3333333 2457999999999999998887654
No 90
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.54 E-value=0.00051 Score=78.87 Aligned_cols=69 Identities=19% Similarity=0.305 Sum_probs=54.1
Q ss_pred CCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhh
Q 008605 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (560)
Q Consensus 289 ~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l 368 (560)
..+++.|.+|+..++.+.-++|.+|.|+|||... ..++..+... .+.++++++||...+.++.+.+...
T Consensus 355 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti-~~~i~~l~~~----------~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTS-ATIVYHLARQ----------GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp CCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHH-HHHHHHHHTT----------CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHH-HHHHHHHHHc----------CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 3578999999999988777899999999999764 3344444321 3457999999999999998887654
No 91
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.72 E-value=0.0056 Score=64.28 Aligned_cols=120 Identities=11% Similarity=0.058 Sum_probs=76.6
Q ss_pred CChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhh
Q 008605 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (560)
Q Consensus 290 ~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~ 369 (560)
.++|+|...+..+...+-+++..+-+.|||.+....++..+.. ..+..+++++|+++-|..+++.++.+.
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~----------~~g~~v~~vA~t~~qA~~vf~~i~~mi 232 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF----------NKDKAVGILAHKGSMSAEVLDRTKQAI 232 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS----------SSSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh----------CCCCeEEEEeCCHHHHHHHHHHHHHHH
Confidence 6899999999877555668999999999998876666554432 235679999999999999888887765
Q ss_pred cCCCC-ceEEE-EeCCcchHHHHHHhcCCCcEEEEC--HHHHHHHHHhccccCCCccEEEEccccccC
Q 008605 370 KCGVP-FRSMV-VTGGFRQKTQLENLQEGVDVLIAT--PGRFMFLIKEGILQLINLRCAILDEVDILF 433 (560)
Q Consensus 370 ~~~~~-i~v~~-l~gg~~~~~~~~~l~~~~~IlV~T--P~~L~~ll~~~~~~l~~l~~LViDEah~ll 433 (560)
..... ++-.. -..... -.+.+|..|.+.+ |+.+ + -..+.++|+||+|.+-
T Consensus 233 ~~~P~ll~~~~~~~~~~~-----I~f~nGs~i~~lsa~~~sl----r-----G~~~~~viiDE~a~~~ 286 (385)
T 2o0j_A 233 ELLPDFLQPGIVEWNKGS-----IELDNGSSIGAYASSPDAV----R-----GNSFAMIYIEDCAFIP 286 (385)
T ss_dssp HHSCTTTSCCEEEECSSE-----EEETTSCEEEEEECSHHHH----H-----TSCCSEEEEESGGGST
T ss_pred HhChHhhhhhhccCCccE-----EEeCCCCEEEEEECCCCCc----c-----CCCCCEEEechhhhcC
Confidence 42111 11000 011100 0122345554443 3322 1 1246789999999886
No 92
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=96.65 E-value=0.0034 Score=57.88 Aligned_cols=52 Identities=17% Similarity=0.261 Sum_probs=44.7
Q ss_pred CCCceeEEEEcCCCCCCCCChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhh
Q 008605 489 SPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFF 552 (560)
Q Consensus 489 ~~~i~~~~v~~~~~~~~~~~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l 552 (560)
+.++.|+++.+.. .+|...|.++++....+++||||+++..|+.++..|+..
T Consensus 3 ~~~i~q~~~~~~~------------~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~ 54 (172)
T 1t5i_A 3 LHGLQQYYVKLKD------------NEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ 54 (172)
T ss_dssp --CCEEEEEECCG------------GGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHT
T ss_pred cCCeEEEEEECCh------------HHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhc
Confidence 4568899988875 379999999999888889999999999999999999875
No 93
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=96.62 E-value=0.0032 Score=57.39 Aligned_cols=54 Identities=15% Similarity=0.192 Sum_probs=46.3
Q ss_pred ccCCCceeEEEEcCCCCCCCCChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhh
Q 008605 487 RISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFF 552 (560)
Q Consensus 487 ~~~~~i~~~~v~~~~~~~~~~~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l 552 (560)
....++.+.++.+.. .+|...|.+++.....+++||||+++.+|+.+++.|+..
T Consensus 5 ~~~~~i~~~~~~~~~------------~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~ 58 (163)
T 2hjv_A 5 LTTRNIEHAVIQVRE------------ENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDL 58 (163)
T ss_dssp -CCCCEEEEEEECCG------------GGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHT
T ss_pred cCcccceEEEEECCh------------HHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHc
Confidence 455678999998865 379999999998877789999999999999999999875
No 94
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=96.61 E-value=0.0031 Score=58.10 Aligned_cols=55 Identities=15% Similarity=0.169 Sum_probs=47.3
Q ss_pred cCCCceeEEEEcCCCCCCCCChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhhc
Q 008605 488 ISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFFS 553 (560)
Q Consensus 488 ~~~~i~~~~v~~~~~~~~~~~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l~ 553 (560)
++.++.|+++.+... ..|...|.++++....+++||||+++..|+.++..|+..+
T Consensus 4 ~~~~i~q~~~~~~~~-----------~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~ 58 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHR-----------KDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDG 58 (175)
T ss_dssp CBCCEEEEEEECSSH-----------HHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTT
T ss_pred ccCCceEEEEEcCCh-----------HhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC
Confidence 456799999988753 2589999999998888899999999999999999998753
No 95
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=96.53 E-value=0.0039 Score=58.72 Aligned_cols=68 Identities=15% Similarity=0.056 Sum_probs=43.3
Q ss_pred HhCCCCeEEeCCCccccCCCceeEEEEcCCCCCCCCChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHh
Q 008605 472 EVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGF 551 (560)
Q Consensus 472 ~~~~~~~~i~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~ 551 (560)
.++.++..+..........++.+.++.+.. ..|...|.+++.... +++||||+++..|+.++..|+.
T Consensus 10 ~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~------------~~K~~~L~~~l~~~~-~~~lVF~~~~~~~~~l~~~L~~ 76 (191)
T 2p6n_A 10 GVDLGTENLYFQSMGAASLDVIQEVEYVKE------------EAKMVYLLECLQKTP-PPVLIFAEKKADVDAIHEYLLL 76 (191)
T ss_dssp ------------------CCSEEEEEECCG------------GGHHHHHHHHHTTSC-SCEEEECSCHHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCCCCCcCceEEEEEcCh------------HHHHHHHHHHHHhCC-CCEEEEECCHHHHHHHHHHHHH
Confidence 345555555554455677789999988865 378999999998754 5899999999999999999986
Q ss_pred h
Q 008605 552 F 552 (560)
Q Consensus 552 l 552 (560)
.
T Consensus 77 ~ 77 (191)
T 2p6n_A 77 K 77 (191)
T ss_dssp H
T ss_pred c
Confidence 5
No 96
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.48 E-value=0.038 Score=61.15 Aligned_cols=143 Identities=11% Similarity=0.104 Sum_probs=86.3
Q ss_pred CChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhh
Q 008605 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (560)
Q Consensus 290 ~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~ 369 (560)
.++++|...+..+...+-+++..+-|+|||.+....++..+.. ..+..++++.|+++.|..+++.++.+.
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~----------~~~~~i~~va~t~~qA~~~~~~i~~~i 232 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF----------NKDKAVGILAHKGSMSAEVLDRTKQAI 232 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHT----------SSSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHh----------CCCCeEEEEECCHHHHHHHHHHHHHHH
Confidence 5899999999877556779999999999998876555554432 135589999999999999998888775
Q ss_pred cCCCC-ceEEEE-eCCcchHHHHHHhcCCCcEEEEC--HHHHHHHHHhccccCCCccEEEEccccccCCCCChHHHHHHH
Q 008605 370 KCGVP-FRSMVV-TGGFRQKTQLENLQEGVDVLIAT--PGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445 (560)
Q Consensus 370 ~~~~~-i~v~~l-~gg~~~~~~~~~l~~~~~IlV~T--P~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~l~~I 445 (560)
..... ++.... ..... -.+.+|..|.+.+ |+.+ +.. ...++|+||+|.+- + ....+..+
T Consensus 233 ~~~p~~~~~~~~~~~~~~-----i~~~nGs~i~~~s~~~~~l----rG~-----~~~~~iiDE~~~~~-~--~~~l~~~~ 295 (592)
T 3cpe_A 233 ELLPDFLQPGIVEWNKGS-----IELDNGSSIGAYASSPDAV----RGN-----SFAMIYIEDCAFIP-N--FHDSWLAI 295 (592)
T ss_dssp TTSCTTTSCCEEEECSSE-----EEETTSCEEEEEECCHHHH----HHS-----CCSEEEEETGGGCT-T--HHHHHHHH
T ss_pred HhChHhhccccccCCccE-----EEecCCCEEEEEeCCCCCc----cCC-----CcceEEEehhccCC-c--hhHHHHHH
Confidence 43221 111000 01110 0122445554432 4433 111 36789999999886 2 23344444
Q ss_pred HhhCC--CCCcEEEEe
Q 008605 446 ISSSP--VTAQYLFVT 459 (560)
Q Consensus 446 l~~~~--~~~Q~IllS 459 (560)
...+. .+.+++++|
T Consensus 296 ~~~l~~~~~~~ii~is 311 (592)
T 3cpe_A 296 QPVISSGRRSKIIITT 311 (592)
T ss_dssp HHHHSSSSCCEEEEEE
T ss_pred HHHhccCCCceEEEEe
Confidence 43332 234544443
No 97
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.45 E-value=0.011 Score=54.50 Aligned_cols=19 Identities=37% Similarity=0.476 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCCcchhhc
Q 008605 304 EGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~ 322 (560)
.|+.+++.+|+|+|||...
T Consensus 37 ~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp GCCEEEECCSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4788999999999999753
No 98
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=96.38 E-value=0.0063 Score=55.46 Aligned_cols=52 Identities=19% Similarity=0.314 Sum_probs=43.4
Q ss_pred CCceeEEEEcCCCCCCCCChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhh
Q 008605 490 PGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFF 552 (560)
Q Consensus 490 ~~i~~~~v~~~~~~~~~~~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l 552 (560)
.++.|+++.+... ..|...|.++++....+++||||+++..|+.++..|+..
T Consensus 2 ~~i~~~~~~~~~~-----------~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~ 53 (165)
T 1fuk_A 2 EGIKQFYVNVEEE-----------EYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRND 53 (165)
T ss_dssp --CEEEEEEEESG-----------GGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCcEEEEEECCcc-----------hhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc
Confidence 3578888887653 249999999999888889999999999999999999875
No 99
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=96.22 E-value=0.01 Score=55.39 Aligned_cols=54 Identities=20% Similarity=0.156 Sum_probs=46.1
Q ss_pred ccCCCceeEEEEcCCCCCCCCChhhhhhhHHHHHHHHHHhC-CCCcEEEEeCchHHHHHHHHHHHhh
Q 008605 487 RISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKS-PVSKTIVFCNKVCFSYKCNNLFGFF 552 (560)
Q Consensus 487 ~~~~~i~~~~v~~~~~~~~~~~~~~~~~~K~~~L~~lL~~~-~~~ktIIFcnS~~~a~~la~~Lk~l 552 (560)
..+.++.+.++.+.. ..|...|.+++... +..++||||+++..|+.++..|+..
T Consensus 15 ~~~~~i~q~~~~v~~------------~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~ 69 (185)
T 2jgn_A 15 STSENITQKVVWVEE------------SDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE 69 (185)
T ss_dssp -CCTTEEEEEEECCG------------GGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHT
T ss_pred CCCCCceEEEEEeCc------------HHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHc
Confidence 456789999998875 37899999999886 5689999999999999999999875
No 100
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.71 E-value=0.023 Score=60.50 Aligned_cols=83 Identities=19% Similarity=0.231 Sum_probs=50.4
Q ss_pred EEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchH
Q 008605 308 CILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387 (560)
Q Consensus 308 vlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~ 387 (560)
.++.|+.|+|||.... +.+. ....+|++||++++.++.+.+.+.+..
T Consensus 164 ~~I~G~aGsGKTt~I~----~~~~-------------~~~~lVlTpT~~aa~~l~~kl~~~~~~---------------- 210 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEIL----SRVN-------------FEEDLILVPGRQAAEMIRRRANASGII---------------- 210 (446)
T ss_dssp EEEEECTTSCHHHHHH----HHCC-------------TTTCEEEESCHHHHHHHHHHHTTTSCC----------------
T ss_pred EEEEcCCCCCHHHHHH----HHhc-------------cCCeEEEeCCHHHHHHHHHHhhhcCcc----------------
Confidence 6789999999997532 1111 013699999999999888877543110
Q ss_pred HHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEcccccc
Q 008605 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDIL 432 (560)
Q Consensus 388 ~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~l 432 (560)
.....-|.|-+.++ ++.........++||||||-++
T Consensus 211 -------~~~~~~V~T~dsfL--~~~~~~~~~~~d~liiDE~sm~ 246 (446)
T 3vkw_A 211 -------VATKDNVRTVDSFL--MNYGKGARCQFKRLFIDEGLML 246 (446)
T ss_dssp -------CCCTTTEEEHHHHH--HTTTSSCCCCCSEEEEETGGGS
T ss_pred -------ccccceEEEeHHhh--cCCCCCCCCcCCEEEEeCcccC
Confidence 00122355655543 2222222234789999999744
No 101
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.68 E-value=0.069 Score=54.48 Aligned_cols=25 Identities=20% Similarity=0.158 Sum_probs=18.3
Q ss_pred CCcEEEEcCCCCcchhhcHHHHHHHH
Q 008605 305 GKSCILADQSGSGKTLAYLLPVIQRL 330 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~llpil~~l 330 (560)
+.++++.+|+|+|||++.- .++..+
T Consensus 45 ~~~lli~GpPGTGKT~~v~-~v~~~L 69 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVN-DVMDEL 69 (318)
T ss_dssp CCEEEEECCCSHHHHHHHH-HHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHH
Confidence 4579999999999997643 344444
No 102
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.42 E-value=0.2 Score=46.26 Aligned_cols=40 Identities=20% Similarity=0.339 Sum_probs=26.1
Q ss_pred CCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEec
Q 008605 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTA 460 (560)
Q Consensus 419 ~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSA 460 (560)
..-.+|||||+|.+. ......+..++...+....+|+.+.
T Consensus 101 ~~~~vliiDe~~~l~--~~~~~~l~~~l~~~~~~~~~i~~~~ 140 (226)
T 2chg_A 101 APFKIIFLDEADALT--ADAQAALRRTMEMYSKSCRFILSCN 140 (226)
T ss_dssp CSCEEEEEETGGGSC--HHHHHHHHHHHHHTTTTEEEEEEES
T ss_pred cCceEEEEeChhhcC--HHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 456789999999986 2344555666666555665665543
No 103
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=95.05 E-value=0.035 Score=61.59 Aligned_cols=72 Identities=15% Similarity=0.118 Sum_probs=53.2
Q ss_pred CCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhh
Q 008605 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (560)
Q Consensus 289 ~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l 368 (560)
..+++-|.+|+. .....++|.|+.|||||.+.+--+...+.... ...-++|++++|+..+.++.+.+.++
T Consensus 8 ~~Ln~~Q~~av~--~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~--------~~~~~iL~ltft~~aa~e~~~rl~~~ 77 (647)
T 3lfu_A 8 DSLNDKQREAVA--APRSNLLVLAGAGSGKTRVLVHRIAWLMSVEN--------CSPYSIMAVTFTNKAAAEMRHRIGQL 77 (647)
T ss_dssp TTCCHHHHHHHT--CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSC--------CCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHh--CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCC--------CChhhEEEEeccHHHHHHHHHHHHHH
Confidence 368899999986 23567999999999999875544444433211 12236999999999999999999876
Q ss_pred hc
Q 008605 369 SK 370 (560)
Q Consensus 369 ~~ 370 (560)
..
T Consensus 78 ~~ 79 (647)
T 3lfu_A 78 MG 79 (647)
T ss_dssp HC
T ss_pred hc
Confidence 43
No 104
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.82 E-value=0.017 Score=54.80 Aligned_cols=19 Identities=21% Similarity=0.092 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCCcchhhc
Q 008605 304 EGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~ 322 (560)
.+..+++.+|+|+|||...
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4678999999999999753
No 105
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.69 E-value=0.082 Score=53.28 Aligned_cols=18 Identities=22% Similarity=0.266 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCCcchhhc
Q 008605 305 GKSCILADQSGSGKTLAY 322 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~ 322 (560)
+..+++.+|+|+|||...
T Consensus 37 ~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp CSSEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 468999999999999753
No 106
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=94.57 E-value=0.035 Score=62.20 Aligned_cols=81 Identities=15% Similarity=0.071 Sum_probs=57.0
Q ss_pred CChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhh
Q 008605 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (560)
Q Consensus 290 ~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~ 369 (560)
.+++-|.+++.. .+.+++|.|+.|||||.+..--+...+.... ....++|+|+.|+..+.++.+.+..+.
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~--------~~~~~IL~lTfT~~Aa~em~~Rl~~~l 71 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG--------YQARHIAAVTFTNKAAREMKERVGQTL 71 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHC--------CCGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcC--------CCHHHeEEEeccHHHHHHHHHHHHHHc
Confidence 478999999864 3678999999999999875544544443321 122369999999999999999988764
Q ss_pred cCC--CCceEEEE
Q 008605 370 KCG--VPFRSMVV 380 (560)
Q Consensus 370 ~~~--~~i~v~~l 380 (560)
... ..+.+..+
T Consensus 72 ~~~~~~~~~v~Tf 84 (673)
T 1uaa_A 72 GRKEARGLMISTF 84 (673)
T ss_dssp CTTTTTTSEEEEH
T ss_pred CcccccCCEEEeH
Confidence 311 23555443
No 107
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.55 E-value=0.036 Score=51.71 Aligned_cols=34 Identities=15% Similarity=0.260 Sum_probs=23.0
Q ss_pred CccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEE
Q 008605 420 NLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFV 458 (560)
Q Consensus 420 ~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~Ill 458 (560)
..++|+|||+|.+. ..+...+..+... +..+++.
T Consensus 76 ~~dvviIDE~Q~~~--~~~~~~l~~l~~~---~~~Vi~~ 109 (184)
T 2orw_A 76 DTRGVFIDEVQFFN--PSLFEVVKDLLDR---GIDVFCA 109 (184)
T ss_dssp TEEEEEECCGGGSC--TTHHHHHHHHHHT---TCEEEEE
T ss_pred CCCEEEEECcccCC--HHHHHHHHHHHHC---CCCEEEE
Confidence 57899999999874 3566666666553 4444443
No 108
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=94.46 E-value=0.053 Score=51.57 Aligned_cols=40 Identities=10% Similarity=0.062 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhhc
Q 008605 514 LNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFFS 553 (560)
Q Consensus 514 ~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l~ 553 (560)
..|+..|.+++.....+++||||+++.+++.++..|+..+
T Consensus 16 ~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~ 55 (212)
T 3eaq_A 16 RGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLG 55 (212)
T ss_dssp TSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcC
Confidence 3799999999998778899999999999999999998753
No 109
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=93.31 E-value=0.0079 Score=55.15 Aligned_cols=51 Identities=16% Similarity=0.202 Sum_probs=41.1
Q ss_pred CceeEEEEcCCCCCCCCChhhhhhhHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHHhh
Q 008605 491 GLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFGFF 552 (560)
Q Consensus 491 ~i~~~~v~~~~~~~~~~~~~~~~~~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk~l 552 (560)
++.|.++.+... ..|...|.++++....+++||||+++..|+.++..|+..
T Consensus 3 ~i~~~~~~~~~~-----------~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~ 53 (170)
T 2yjt_D 3 KIHQWYYRADDL-----------EHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREA 53 (170)
Confidence 456666666541 267888999998877789999999999999999999765
No 110
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.16 E-value=0.22 Score=49.44 Aligned_cols=39 Identities=21% Similarity=0.353 Sum_probs=25.7
Q ss_pred CCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEe
Q 008605 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459 (560)
Q Consensus 419 ~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllS 459 (560)
..-.+|||||+|.+. ......+..+++..+....+|+.+
T Consensus 109 ~~~~vliiDe~~~l~--~~~~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALT--QDAQQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSC--HHHHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCC--HHHHHHHHHHHHhcCCCCeEEEEe
Confidence 456789999999986 233445556666655566666544
No 111
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.02 E-value=0.039 Score=49.65 Aligned_cols=18 Identities=22% Similarity=0.372 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCCcchhh
Q 008605 304 EGKSCILADQSGSGKTLA 321 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla 321 (560)
.|..+++.+|+|+|||..
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 688899999999999964
No 112
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=93.81 E-value=0.079 Score=59.23 Aligned_cols=113 Identities=15% Similarity=0.177 Sum_probs=72.4
Q ss_pred CChHHHHHHHHHHHcC--CcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHh
Q 008605 290 RPSQIQAMAFPPVVEG--KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS 367 (560)
Q Consensus 290 ~pt~iQ~~aip~il~g--~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~ 367 (560)
.+|.-|.+++..++.- .-.++.|+-|.|||.+.-+.+ ..+. ..++|.+|+.+-+..+.+...+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~-a~~~--------------~~~~vtAP~~~a~~~l~~~~~~ 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLI-SRIA--------------GRAIVTAPAKASTDVLAQFAGE 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHH-HHSS--------------SCEEEECSSCCSCHHHHHHHGG
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHH-HHHH--------------hCcEEECCCHHHHHHHHHHhhC
Confidence 6788999999888762 347889999999995533332 2221 1369999998876654443221
Q ss_pred hhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCCChHHHHHHHHh
Q 008605 368 LSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447 (560)
Q Consensus 368 l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~l~~Il~ 447 (560)
- |-+..|+.+. . .+...++||||||=.+- .+.++.++.
T Consensus 240 ~------------------------------i~~~~Pd~~~---~----~~~~~dlliVDEAAaIp-----~pll~~ll~ 277 (671)
T 2zpa_A 240 K------------------------------FRFIAPDALL---A----SDEQADWLVVDEAAAIP-----APLLHQLVS 277 (671)
T ss_dssp G------------------------------CCBCCHHHHH---H----SCCCCSEEEEETGGGSC-----HHHHHHHHT
T ss_pred C------------------------------eEEeCchhhh---h----CcccCCEEEEEchhcCC-----HHHHHHHHh
Confidence 0 2223565532 1 23458899999996654 466666666
Q ss_pred hCCCCCcEEEEeccCC
Q 008605 448 SSPVTAQYLFVTATLP 463 (560)
Q Consensus 448 ~~~~~~Q~IllSATlp 463 (560)
.. ..++||.|+.
T Consensus 278 ~~----~~v~~~tTv~ 289 (671)
T 2zpa_A 278 RF----PRTLLTTTVQ 289 (671)
T ss_dssp TS----SEEEEEEEBS
T ss_pred hC----CeEEEEecCC
Confidence 33 3588888873
No 113
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=93.71 E-value=0.087 Score=59.64 Aligned_cols=71 Identities=15% Similarity=0.142 Sum_probs=52.7
Q ss_pred CCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhh
Q 008605 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (560)
Q Consensus 289 ~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l 368 (560)
..+++-|.+|+.. ....++|.|+.|||||.+..--+...+.... ....++|+|+.|+..|.++.+.+..+
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~--------~~p~~IL~vTFTnkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKH--------VAPWNILAITFTNKAAREMRERVQSL 79 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTC--------CCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcC--------CCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 4689999999865 3568999999999999875544444443211 12236999999999999998888776
Q ss_pred h
Q 008605 369 S 369 (560)
Q Consensus 369 ~ 369 (560)
.
T Consensus 80 l 80 (724)
T 1pjr_A 80 L 80 (724)
T ss_dssp H
T ss_pred h
Confidence 4
No 114
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.69 E-value=0.49 Score=43.96 Aligned_cols=38 Identities=24% Similarity=0.387 Sum_probs=22.4
Q ss_pred CccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEe
Q 008605 420 NLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459 (560)
Q Consensus 420 ~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllS 459 (560)
.-.+|||||+|.+. ......+..++...+....+|+.|
T Consensus 126 ~~~vlviDe~~~l~--~~~~~~l~~~l~~~~~~~~~i~~t 163 (250)
T 1njg_A 126 RFKVYLIDEVHMLS--RHSFNALLKTLEEPPEHVKFLLAT 163 (250)
T ss_dssp SSEEEEEETGGGSC--HHHHHHHHHHHHSCCTTEEEEEEE
T ss_pred CceEEEEECccccc--HHHHHHHHHHHhcCCCceEEEEEe
Confidence 34689999999975 233344444455444445555544
No 115
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=93.67 E-value=0.21 Score=53.05 Aligned_cols=18 Identities=22% Similarity=0.170 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCCcchhhc
Q 008605 305 GKSCILADQSGSGKTLAY 322 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~ 322 (560)
+..+++.+|+|+|||...
T Consensus 130 ~~~lll~Gp~G~GKTtLa 147 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLL 147 (440)
T ss_dssp SCCEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999754
No 116
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=93.64 E-value=0.39 Score=48.72 Aligned_cols=19 Identities=26% Similarity=0.401 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCCcchhhc
Q 008605 304 EGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~ 322 (560)
.+..+++.+|+|+|||...
T Consensus 43 ~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCCEEECBCTTSSHHHHH
T ss_pred CCCcEEEECCCCCCHHHHH
Confidence 3467999999999999754
No 117
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.60 E-value=0.089 Score=50.83 Aligned_cols=113 Identities=12% Similarity=0.094 Sum_probs=58.6
Q ss_pred cCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCC
Q 008605 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg 383 (560)
.|.=+++.+++|+|||.+.+ -++.++.. .+.+++|+.|...- . . ...+... .++.
T Consensus 11 ~G~i~litG~mGsGKTT~ll-~~~~r~~~-----------~g~kVli~~~~~d~--r-~--~~~i~sr-lG~~------- 65 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELI-RRLHRLEY-----------ADVKYLVFKPKIDT--R-S--IRNIQSR-TGTS------- 65 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHH-HHHHHHHH-----------TTCCEEEEEECCCG--G-G--CSSCCCC-CCCS-------
T ss_pred CcEEEEEECCCCCcHHHHHH-HHHHHHHh-----------cCCEEEEEEeccCc--h-H--HHHHHHh-cCCC-------
Confidence 34557789999999997643 33333332 24568888775421 0 0 0011110 0100
Q ss_pred cchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEe
Q 008605 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459 (560)
Q Consensus 384 ~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllS 459 (560)
. ..+-+.+...+...+... ..-...++|||||++.+. ......+..+.. .+.++|++.
T Consensus 66 --~----------~~~~~~~~~~i~~~i~~~-~~~~~~dvViIDEaQ~l~--~~~ve~l~~L~~---~gi~Vil~G 123 (223)
T 2b8t_A 66 --L----------PSVEVESAPEILNYIMSN-SFNDETKVIGIDEVQFFD--DRICEVANILAE---NGFVVIISG 123 (223)
T ss_dssp --S----------CCEEESSTHHHHHHHHST-TSCTTCCEEEECSGGGSC--THHHHHHHHHHH---TTCEEEEEC
T ss_pred --c----------cccccCCHHHHHHHHHHH-hhCCCCCEEEEecCccCc--HHHHHHHHHHHh---CCCeEEEEe
Confidence 0 123345566666666542 223457899999999764 223334444433 245555544
No 118
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.49 E-value=0.19 Score=46.61 Aligned_cols=17 Identities=35% Similarity=0.370 Sum_probs=15.1
Q ss_pred CcEEEEcCCCCcchhhc
Q 008605 306 KSCILADQSGSGKTLAY 322 (560)
Q Consensus 306 ~dvlv~apTGSGKTla~ 322 (560)
+++++.+|+|+|||...
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 68999999999999753
No 119
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.36 E-value=0.29 Score=48.50 Aligned_cols=17 Identities=24% Similarity=0.311 Sum_probs=14.8
Q ss_pred CcEEEEcCCCCcchhhc
Q 008605 306 KSCILADQSGSGKTLAY 322 (560)
Q Consensus 306 ~dvlv~apTGSGKTla~ 322 (560)
.++++.+|+|+|||...
T Consensus 68 ~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 47999999999999764
No 120
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.30 E-value=0.28 Score=53.06 Aligned_cols=41 Identities=15% Similarity=0.140 Sum_probs=26.3
Q ss_pred CccEEEEccccccCCC-CChHHHHHHHHhhCCCCCcEEEEeccC
Q 008605 420 NLRCAILDEVDILFND-EDFEVALQSLISSSPVTAQYLFVTATL 462 (560)
Q Consensus 420 ~l~~LViDEah~ll~d-~~f~~~l~~Il~~~~~~~Q~IllSATl 462 (560)
.-.+|||||+|.+... .+....+..+++.. ...+|+++++.
T Consensus 148 ~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~ 189 (516)
T 1sxj_A 148 KHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNER 189 (516)
T ss_dssp TSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCT
T ss_pred CCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCC
Confidence 4568999999999732 23334555555542 45677777764
No 121
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.27 E-value=0.24 Score=49.66 Aligned_cols=41 Identities=12% Similarity=0.131 Sum_probs=25.9
Q ss_pred CCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEec
Q 008605 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTA 460 (560)
Q Consensus 419 ~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSA 460 (560)
...++|||||+|.+. .......+..+++..+.+.++|+.+.
T Consensus 104 ~~~~vliiDEi~~l~-~~~~~~~L~~~le~~~~~~~iI~~~n 144 (324)
T 3u61_B 104 GRQKVIVIDEFDRSG-LAESQRHLRSFMEAYSSNCSIIITAN 144 (324)
T ss_dssp SCEEEEEEESCCCGG-GHHHHHHHHHHHHHHGGGCEEEEEES
T ss_pred CCCeEEEEECCcccC-cHHHHHHHHHHHHhCCCCcEEEEEeC
Confidence 367899999999985 12344445555555555666666443
No 122
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=93.25 E-value=0.13 Score=52.47 Aligned_cols=33 Identities=15% Similarity=0.197 Sum_probs=23.8
Q ss_pred ChHHHHHHHHHHH----cCC---cEEEEcCCCCcchhhcH
Q 008605 291 PSQIQAMAFPPVV----EGK---SCILADQSGSGKTLAYL 323 (560)
Q Consensus 291 pt~iQ~~aip~il----~g~---dvlv~apTGSGKTla~l 323 (560)
..|||.+++..+. +|+ -+++.+|.|+|||....
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~ 42 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY 42 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH
Confidence 3577777765543 443 38999999999997644
No 123
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=92.85 E-value=0.78 Score=44.72 Aligned_cols=47 Identities=19% Similarity=0.366 Sum_probs=27.1
Q ss_pred CccEEEEccccccCCC-----CChHHHHHHHHhhCC----CCCcEEEEeccCCHHH
Q 008605 420 NLRCAILDEVDILFND-----EDFEVALQSLISSSP----VTAQYLFVTATLPVEI 466 (560)
Q Consensus 420 ~l~~LViDEah~ll~d-----~~f~~~l~~Il~~~~----~~~Q~IllSATlp~~v 466 (560)
...+|+|||+|.++.. ..-...++.+...+. ...+++++.+|-....
T Consensus 124 ~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~ 179 (272)
T 1d2n_A 124 QLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDV 179 (272)
T ss_dssp SEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHH
T ss_pred CCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhh
Confidence 4578999999998521 112233344444332 3456767777766543
No 124
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.84 E-value=0.47 Score=50.36 Aligned_cols=49 Identities=10% Similarity=0.132 Sum_probs=36.8
Q ss_pred CCccEEEEccccccC--CCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHH
Q 008605 419 INLRCAILDEVDILF--NDEDFEVALQSLISSSPVTAQYLFVTATLPVEIY 467 (560)
Q Consensus 419 ~~l~~LViDEah~ll--~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~ 467 (560)
...+++|||++-++. .+..+...+..+.....+..-+++++|+...+..
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~ 228 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAY 228 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGH
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHH
Confidence 468899999998765 4666778888887777667778888998754433
No 125
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.80 E-value=0.8 Score=46.32 Aligned_cols=39 Identities=21% Similarity=0.327 Sum_probs=27.2
Q ss_pred CCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEe
Q 008605 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459 (560)
Q Consensus 419 ~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllS 459 (560)
...+++|+||+|.|. ......+..+++..+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~--~~~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMT--NAAQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSC--HHHHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCC--HHHHHHHHHHHhcCCCCeEEEEEe
Confidence 457899999999986 234455666677766666666554
No 126
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=92.64 E-value=0.096 Score=62.92 Aligned_cols=70 Identities=21% Similarity=0.267 Sum_probs=51.8
Q ss_pred CChHHHHHHHHHHHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHh
Q 008605 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS 367 (560)
Q Consensus 290 ~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~ 367 (560)
.+|+-|.++|.. .+++++|.|..|||||.+.+--++..+.... .....-++++|++|++.+.++.+.+..
T Consensus 10 ~~t~eQ~~~i~~--~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~------~~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 10 TWTDDQWNAIVS--TGQDILVAAAAGSGKTAVLVERMIRKITAEE------NPIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp CCCHHHHHHHHC--CSSCEEEEECTTCCHHHHHHHHHHHHHSCSS------SCCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCC------CCCCccceEEEeccHHHHHHHHHHHHH
Confidence 679999999854 3789999999999999885544554443210 011233799999999999998887765
No 127
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=92.39 E-value=0.88 Score=45.78 Aligned_cols=50 Identities=18% Similarity=0.296 Sum_probs=31.6
Q ss_pred cccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHH-----cCCcEEEEcCCCCcchhhc
Q 008605 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVV-----EGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 267 ~~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il-----~g~dvlv~apTGSGKTla~ 322 (560)
..+|+++.-.+.+.+.|...=. .| ...|.+. ..+.+++.+|+|+|||...
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~---~~---~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVI---LP---VKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTH---HH---HHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCHHHhcChHHHHHHHHHHHH---HH---HhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 3579999888888888765210 00 0011111 1357999999999999754
No 128
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.21 E-value=0.36 Score=49.29 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCCcchhhc
Q 008605 305 GKSCILADQSGSGKTLAY 322 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~ 322 (560)
.+.+++.+|+|+|||...
T Consensus 45 ~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 356999999999999754
No 129
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.21 E-value=0.42 Score=48.15 Aligned_cols=39 Identities=21% Similarity=0.313 Sum_probs=25.6
Q ss_pred CCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEe
Q 008605 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459 (560)
Q Consensus 419 ~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllS 459 (560)
...++|+|||+|.+. ......+..+++..+....+|+.+
T Consensus 132 ~~~~vliiDE~~~l~--~~~~~~Ll~~le~~~~~~~~il~~ 170 (353)
T 1sxj_D 132 PPYKIIILDEADSMT--ADAQSALRRTMETYSGVTRFCLIC 170 (353)
T ss_dssp CSCEEEEETTGGGSC--HHHHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEECCCccC--HHHHHHHHHHHHhcCCCceEEEEe
Confidence 345789999999986 234455556666655555666544
No 130
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=92.10 E-value=1.4 Score=44.18 Aligned_cols=43 Identities=14% Similarity=0.126 Sum_probs=28.7
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHH----cCCcEEEEcCCCCcchhhc
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVV----EGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il----~g~dvlv~apTGSGKTla~ 322 (560)
.+|+++--.+.+++.|.. ++.... ...++++.+|+|+|||...
T Consensus 26 ~~~~~iiG~~~~~~~l~~------------~l~~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNV------------FIAAAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CSGGGCCSCHHHHHHHHH------------HHHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred CCHHHhCChHHHHHHHHH------------HHHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 468887767777766643 111221 2258999999999999753
No 131
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.03 E-value=0.64 Score=46.94 Aligned_cols=42 Identities=19% Similarity=0.425 Sum_probs=28.6
Q ss_pred CCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccC
Q 008605 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATL 462 (560)
Q Consensus 419 ~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATl 462 (560)
...+++|+||+|.| +......+..+++..+.+..+|+.|...
T Consensus 133 ~~~~vlilDE~~~L--~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 133 HRYKCVIINEANSL--TKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp -CCEEEEEECTTSS--CHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCeEEEEeCcccc--CHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 35679999999994 4455566666677666666666666543
No 132
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=91.83 E-value=0.33 Score=45.62 Aligned_cols=39 Identities=18% Similarity=0.310 Sum_probs=25.5
Q ss_pred CCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCH
Q 008605 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTA 355 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~Ptr 355 (560)
|+=.++.++.|+|||.+.+ -++.+... .+.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll-~~a~r~~~-----------~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELI-RRIRRAKI-----------AKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHH-HHHHHHHH-----------TTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHH-HHHHHHHH-----------CCCEEEEEEecc
Confidence 4446789999999997644 33433332 255788888874
No 133
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=91.39 E-value=0.5 Score=48.12 Aligned_cols=16 Identities=31% Similarity=0.569 Sum_probs=14.2
Q ss_pred cEEEEcCCCCcchhhc
Q 008605 307 SCILADQSGSGKTLAY 322 (560)
Q Consensus 307 dvlv~apTGSGKTla~ 322 (560)
.+++.+|+|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999754
No 134
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=91.35 E-value=0.44 Score=48.00 Aligned_cols=18 Identities=28% Similarity=0.311 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCCcchhhc
Q 008605 305 GKSCILADQSGSGKTLAY 322 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~ 322 (560)
++++++.+|+|+|||...
T Consensus 152 ~~~lll~G~~GtGKT~La 169 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLL 169 (308)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 578999999999999754
No 135
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=91.22 E-value=2.3 Score=42.05 Aligned_cols=46 Identities=20% Similarity=0.112 Sum_probs=27.4
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHH-HcCCcEEEEcCCCCcchhhc
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPV-VEGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~i-l~g~dvlv~apTGSGKTla~ 322 (560)
.+|+++--.+..+..|... ...+... .....+++.+|+|+|||...
T Consensus 9 ~~~~~~ig~~~~~~~l~~~---------l~~~~~~~~~~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 9 KTLDEYIGQERLKQKLRVY---------LEAAKARKEPLEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CSTTTCCSCHHHHHHHHHH---------HHHHHHHCSCCCCCEEECCTTCCCHHHH
T ss_pred ccHHHhhCHHHHHHHHHHH---------HHHHHccCCCCCcEEEECCCCCCHHHHH
Confidence 4677766566666655431 1111000 13368999999999999753
No 136
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.00 E-value=1.2 Score=43.98 Aligned_cols=39 Identities=21% Similarity=0.306 Sum_probs=25.1
Q ss_pred CccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEec
Q 008605 420 NLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTA 460 (560)
Q Consensus 420 ~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSA 460 (560)
.-.+|||||+|.+. ......+..+++..+....+|+.|.
T Consensus 107 ~~~viiiDe~~~l~--~~~~~~L~~~le~~~~~~~~il~~~ 145 (323)
T 1sxj_B 107 KHKIVILDEADSMT--AGAQQALRRTMELYSNSTRFAFACN 145 (323)
T ss_dssp CCEEEEEESGGGSC--HHHHHTTHHHHHHTTTTEEEEEEES
T ss_pred CceEEEEECcccCC--HHHHHHHHHHHhccCCCceEEEEeC
Confidence 36789999999986 2233445555666555666666553
No 137
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=89.94 E-value=0.48 Score=44.70 Aligned_cols=38 Identities=16% Similarity=0.300 Sum_probs=24.5
Q ss_pred CCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCC
Q 008605 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPT 354 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~Pt 354 (560)
|+=.++.++.|+|||.- ++-.+..... .+.+++|+.|.
T Consensus 20 g~l~fiyG~MgsGKTt~-Ll~~i~n~~~-----------~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTE-LMRRVRRFQI-----------AQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHH-HHHHHHHHHH-----------TTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHH-HHHHHHHHHH-----------cCCeEEEEccc
Confidence 55578899999999954 2333333222 23568888776
No 138
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=89.81 E-value=0.33 Score=49.22 Aligned_cols=18 Identities=22% Similarity=0.350 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCCcchhhc
Q 008605 305 GKSCILADQSGSGKTLAY 322 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~ 322 (560)
+..+++.+|+|+|||...
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 567999999999999754
No 139
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=89.73 E-value=1.3 Score=47.13 Aligned_cols=49 Identities=14% Similarity=0.189 Sum_probs=31.7
Q ss_pred CccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHH
Q 008605 420 NLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYN 468 (560)
Q Consensus 420 ~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~ 468 (560)
..+++|||.+=++..+......+..+.....+..-++++.||......+
T Consensus 182 ~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~ 230 (443)
T 3dm5_A 182 GVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN 230 (443)
T ss_dssp TCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH
T ss_pred CCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH
Confidence 4678899988665433345556666666665566677888887544433
No 140
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=89.54 E-value=0.72 Score=43.10 Aligned_cols=19 Identities=32% Similarity=0.459 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCCcchhhc
Q 008605 304 EGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~ 322 (560)
.|.-+++.+|+|+|||...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFS 40 (235)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 4567889999999999654
No 141
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=89.05 E-value=3.9 Score=43.18 Aligned_cols=53 Identities=17% Similarity=0.192 Sum_probs=30.8
Q ss_pred cccccccCCCHHHHHHHHHCCCCCChHHHHH-HHH-HHHcCCcEEEEcCCCCcchhhc
Q 008605 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAM-AFP-PVVEGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 267 ~~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~-aip-~il~g~dvlv~apTGSGKTla~ 322 (560)
..+|+++.-.+.+.+.|...-. .|++.. .+. .....+.+++.+|+|+|||+..
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~---~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVI---LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHT---HHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 3578998877777777754200 000000 000 0112367999999999999753
No 142
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=88.97 E-value=0.81 Score=43.79 Aligned_cols=39 Identities=13% Similarity=0.223 Sum_probs=24.2
Q ss_pred CcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHH
Q 008605 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAE 356 (560)
Q Consensus 306 ~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~Ptre 356 (560)
+=.+++++.|+|||.+.+- .+.+... .+.+++++.|...
T Consensus 29 ~l~vitG~MgsGKTT~lL~-~a~r~~~-----------~g~kVli~k~~~d 67 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIR-RVRRTQF-----------AKQHAIVFKPCID 67 (214)
T ss_dssp EEEEEECSTTSCHHHHHHH-HHHHHHH-----------TTCCEEEEECC--
T ss_pred EEEEEECCCCCcHHHHHHH-HHHHHHH-----------CCCEEEEEEeccC
Confidence 3345788889999976433 3333322 3557999988753
No 143
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=88.89 E-value=0.62 Score=45.97 Aligned_cols=42 Identities=24% Similarity=0.291 Sum_probs=28.3
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhc
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~ 322 (560)
.+|+++--.+.+++.|...= .. -...++++.+|+|+|||...
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l-~~------------~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGYV-ER------------KNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTTT-TT------------TCCCCEEEESSSSSSHHHHH
T ss_pred CCHHHHhCCHHHHHHHHHHH-hC------------CCCCeEEEECcCCcCHHHHH
Confidence 46777766777777776531 00 11236999999999999753
No 144
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=88.77 E-value=2.1 Score=40.40 Aligned_cols=52 Identities=23% Similarity=0.213 Sum_probs=30.5
Q ss_pred cCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhh
Q 008605 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l 368 (560)
.|.-+++.+++|+|||...+--+...+ . .+..++|+.-. +-..++.+.+..+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~-~-----------~~~~v~~~~~e-~~~~~~~~~~~~~ 73 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGL-K-----------MGEPGIYVALE-EHPVQVRQNMAQF 73 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHH-H-----------TTCCEEEEESS-SCHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH-h-----------cCCeEEEEEcc-CCHHHHHHHHHHc
Confidence 456789999999999976433232222 1 12347776633 3345555555544
No 145
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=88.48 E-value=3.4 Score=41.62 Aligned_cols=39 Identities=23% Similarity=0.339 Sum_probs=24.0
Q ss_pred CCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEe
Q 008605 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459 (560)
Q Consensus 419 ~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllS 459 (560)
..-.+|||||+|.+. ......+..+++..+....+|+.+
T Consensus 118 ~~~~vliiDe~~~l~--~~~~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLS--RHSFNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp SSSEEEEEECGGGSC--HHHHHHHHHHHHSCCSSEEEEEEE
T ss_pred CCeEEEEEECcchhc--HHHHHHHHHHHhcCCCceEEEEEe
Confidence 346789999999986 233344455555555555555544
No 146
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=88.16 E-value=2.8 Score=37.38 Aligned_cols=73 Identities=18% Similarity=0.267 Sum_probs=53.4
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHh---c-CCCcEEEECHHHHHHHHHhccccCCC
Q 008605 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLIN 420 (560)
Q Consensus 345 ~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l---~-~~~~IlV~TP~~L~~ll~~~~~~l~~ 420 (560)
+.++||.++++.-+..+.+.+... ++.+..++|+....+....+ . ...+|||+|. .+ ...+++..
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gld~~~ 103 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL-----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----VA-ARGIDIEN 103 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GG-TTTCCCSC
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hh-hcCCchhc
Confidence 347999999999999999988765 46788899988765543333 2 3478999993 22 34567888
Q ss_pred ccEEEEcc
Q 008605 421 LRCAILDE 428 (560)
Q Consensus 421 l~~LViDE 428 (560)
++++|.-+
T Consensus 104 ~~~Vi~~~ 111 (163)
T 2hjv_A 104 ISLVINYD 111 (163)
T ss_dssp CSEEEESS
T ss_pred CCEEEEeC
Confidence 88887644
No 147
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=87.54 E-value=3.4 Score=37.35 Aligned_cols=86 Identities=16% Similarity=0.186 Sum_probs=58.8
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHh---c-CCCcEEEECHHHHHHHHHhccccCCC
Q 008605 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLIN 420 (560)
Q Consensus 345 ~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l---~-~~~~IlV~TP~~L~~ll~~~~~~l~~ 420 (560)
..++||.|+++.-+..++..+... ++.+..++|+....+....+ . ....|+|+|.- + ...+++..
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~-~~Gldi~~ 99 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ-----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL-----F-GRGMDIER 99 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC-----C-STTCCGGG
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc-----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc-----h-hcCcchhh
Confidence 447999999999999999888765 46788899988765543333 2 35899999931 1 23566778
Q ss_pred ccEEEEccccccCCCCChHHHHHHHH
Q 008605 421 LRCAILDEVDILFNDEDFEVALQSLI 446 (560)
Q Consensus 421 l~~LViDEah~ll~d~~f~~~l~~Il 446 (560)
++++|.=+. .......+.++-
T Consensus 100 ~~~Vi~~d~-----p~~~~~~~qr~G 120 (172)
T 1t5i_A 100 VNIAFNYDM-----PEDSDTYLHRVA 120 (172)
T ss_dssp CSEEEESSC-----CSSHHHHHHHHH
T ss_pred CCEEEEECC-----CCCHHHHHHHhc
Confidence 888876433 234444455543
No 148
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=87.41 E-value=0.92 Score=43.54 Aligned_cols=40 Identities=20% Similarity=0.253 Sum_probs=25.1
Q ss_pred CCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHH
Q 008605 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAE 356 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~Ptre 356 (560)
|.=.+++++.|+|||...+ -.+.+... .+.+++++-|...
T Consensus 28 G~I~vitG~M~sGKTT~Ll-r~~~r~~~-----------~g~kvli~kp~~D 67 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELI-RRLRRGIY-----------AKQKVVVFKPAID 67 (219)
T ss_dssp CEEEEEEECTTSCHHHHHH-HHHHHHHH-----------TTCCEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHHH-HHHHHHHH-----------cCCceEEEEeccC
Confidence 4456789999999996533 33343332 2456888888653
No 149
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=87.16 E-value=1.6 Score=46.20 Aligned_cols=19 Identities=37% Similarity=0.410 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCCcchhhcH
Q 008605 305 GKSCILADQSGSGKTLAYL 323 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~l 323 (560)
|.=+++.|++|+|||...+
T Consensus 200 G~l~ii~G~pg~GKT~lal 218 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFAL 218 (444)
T ss_dssp TCEEEEEECTTSCHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHH
Confidence 4557899999999996543
No 150
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=87.05 E-value=1.9 Score=43.34 Aligned_cols=40 Identities=15% Similarity=0.212 Sum_probs=26.0
Q ss_pred CCCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEe
Q 008605 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459 (560)
Q Consensus 418 l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllS 459 (560)
....+++||||||.|. ..-...+...++.-+....+|+++
T Consensus 80 ~~~~kvviIdead~lt--~~a~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 80 LYTRKYVIVHDCERMT--QQAANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSSEEEEETTGGGBC--HHHHHHTHHHHHSCCTTEEEEEEE
T ss_pred cCCceEEEeccHHHhC--HHHHHHHHHHHhCCCCCeEEEEEE
Confidence 3457899999999996 233344555566555556566554
No 151
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=86.96 E-value=2.2 Score=41.30 Aligned_cols=39 Identities=13% Similarity=0.254 Sum_probs=25.4
Q ss_pred CCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCH
Q 008605 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTA 355 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~Ptr 355 (560)
|+=.++.++.|+|||...+-- +.+.. ..+.+++++-|.+
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~-~~r~~-----------~~g~kvli~kp~~ 57 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRR-VRRFQ-----------IAQYKCLVIKYAK 57 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHH-HHHHH-----------TTTCCEEEEEETT
T ss_pred eEEEEEECCCCCcHHHHHHHH-HHHHH-----------HCCCeEEEEeecC
Confidence 555677888899999764333 32322 2356788888765
No 152
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=86.43 E-value=3.9 Score=37.80 Aligned_cols=86 Identities=19% Similarity=0.232 Sum_probs=59.7
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHh---c-CCCcEEEECHHHHHHHHHhccccCCC
Q 008605 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLIN 420 (560)
Q Consensus 345 ~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l---~-~~~~IlV~TP~~L~~ll~~~~~~l~~ 420 (560)
+.++||.+++++-+..+...++.. ++.+..++|+....++...+ . ...+|+|+|. .+. ..+++..
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----~~~-~Gldi~~ 122 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK-----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-----VAS-KGLDFPA 122 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH-----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-----HHH-TTCCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-----chh-cCCCccc
Confidence 347999999999999999988765 46788899988765544333 2 4589999992 233 3567888
Q ss_pred ccEEEEccccccCCCCChHHHHHHHH
Q 008605 421 LRCAILDEVDILFNDEDFEVALQSLI 446 (560)
Q Consensus 421 l~~LViDEah~ll~d~~f~~~l~~Il 446 (560)
++++|.=+. .......+.++-
T Consensus 123 v~~VI~~d~-----p~~~~~~~qr~G 143 (191)
T 2p6n_A 123 IQHVINYDM-----PEEIENYVHRIG 143 (191)
T ss_dssp CSEEEESSC-----CSSHHHHHHHHT
T ss_pred CCEEEEeCC-----CCCHHHHHHHhC
Confidence 988876332 234455555553
No 153
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=86.35 E-value=1.8 Score=45.81 Aligned_cols=21 Identities=29% Similarity=0.238 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCCcchhhcHH
Q 008605 304 EGKSCILADQSGSGKTLAYLL 324 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~ll 324 (560)
.|.-+++.|++|+|||...+-
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ 222 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALN 222 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 345688999999999965443
No 154
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=86.30 E-value=4.7 Score=35.93 Aligned_cols=73 Identities=15% Similarity=0.201 Sum_probs=53.3
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHh---c-CCCcEEEECHHHHHHHHHhccccCCC
Q 008605 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLIN 420 (560)
Q Consensus 345 ~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l---~-~~~~IlV~TP~~L~~ll~~~~~~l~~ 420 (560)
..++||.+++++-+..+...++.. ++.+..++|+....++...+ . ....|+|+|. .+ ...+++..
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~G~d~~~ 98 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND-----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LL-ARGIDVQQ 98 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----GG-TTTCCCCS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----hh-hcCCCccc
Confidence 457999999999999999888764 46788899988765543333 2 3578999993 22 34567888
Q ss_pred ccEEEEcc
Q 008605 421 LRCAILDE 428 (560)
Q Consensus 421 l~~LViDE 428 (560)
++++|.-+
T Consensus 99 ~~~Vi~~~ 106 (165)
T 1fuk_A 99 VSLVINYD 106 (165)
T ss_dssp CSEEEESS
T ss_pred CCEEEEeC
Confidence 88887744
No 155
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=85.83 E-value=1.1 Score=45.88 Aligned_cols=17 Identities=29% Similarity=0.286 Sum_probs=13.9
Q ss_pred CcEEE--EcCCCCcchhhc
Q 008605 306 KSCIL--ADQSGSGKTLAY 322 (560)
Q Consensus 306 ~dvlv--~apTGSGKTla~ 322 (560)
..+++ .++.|+|||...
T Consensus 51 ~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp EEEEEECTTCCSSSHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHH
Confidence 45778 899999999754
No 156
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=84.71 E-value=4.2 Score=36.63 Aligned_cols=73 Identities=11% Similarity=0.095 Sum_probs=53.9
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHh---c-CCCcEEEECHHHHHHHHHhccccCCC
Q 008605 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLIN 420 (560)
Q Consensus 345 ~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l---~-~~~~IlV~TP~~L~~ll~~~~~~l~~ 420 (560)
..++||.|+++..+..+...+... ++.+..++|+.+..+....+ . ...+|||+|. .+ ...+++..
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~-~~Gid~~~ 102 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD-----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----VC-ARGIDVKQ 102 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT-----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----SC-CTTTCCTT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----ch-hcCCCccc
Confidence 458999999999999999888764 46788899998765554333 2 3589999993 12 23567888
Q ss_pred ccEEEEcc
Q 008605 421 LRCAILDE 428 (560)
Q Consensus 421 l~~LViDE 428 (560)
+.++|.=+
T Consensus 103 ~~~Vi~~d 110 (175)
T 2rb4_A 103 VTIVVNFD 110 (175)
T ss_dssp EEEEEESS
T ss_pred CCEEEEeC
Confidence 98888533
No 157
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=84.45 E-value=3 Score=41.60 Aligned_cols=19 Identities=32% Similarity=0.445 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCCcchhhcH
Q 008605 305 GKSCILADQSGSGKTLAYL 323 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~l 323 (560)
++-+++++++|+|||....
T Consensus 105 g~vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp SSEEEEEESTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568889999999997643
No 158
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=82.97 E-value=5.9 Score=36.47 Aligned_cols=20 Identities=30% Similarity=0.180 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCCcchhhcHH
Q 008605 305 GKSCILADQSGSGKTLAYLL 324 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~ll 324 (560)
|.-+++.+++|+|||.....
T Consensus 20 G~~~~i~G~~GsGKTtl~~~ 39 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQ 39 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 45688999999999976443
No 159
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=82.71 E-value=3.8 Score=38.50 Aligned_cols=21 Identities=19% Similarity=0.126 Sum_probs=16.6
Q ss_pred cCCcEEEEcCCCCcchhhcHH
Q 008605 304 EGKSCILADQSGSGKTLAYLL 324 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~ll 324 (560)
.|.-+++.+|+|+|||.....
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~ 43 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHT 43 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHH
Confidence 456788999999999976443
No 160
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=82.38 E-value=1.6 Score=46.27 Aligned_cols=17 Identities=41% Similarity=0.438 Sum_probs=14.6
Q ss_pred CcEEEEcCCCCcchhhc
Q 008605 306 KSCILADQSGSGKTLAY 322 (560)
Q Consensus 306 ~dvlv~apTGSGKTla~ 322 (560)
.++++.+|+|+|||...
T Consensus 51 ~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCcHHHHH
Confidence 47999999999999753
No 161
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=82.34 E-value=6.3 Score=36.89 Aligned_cols=71 Identities=17% Similarity=0.216 Sum_probs=53.0
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHh---c-CCCcEEEECHHHHHHHHHhccccCCC
Q 008605 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLIN 420 (560)
Q Consensus 345 ~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l---~-~~~~IlV~TP~~L~~ll~~~~~~l~~ 420 (560)
+.++||.|+++.-+..+...+... ++.+..++|+.....+...+ . ...+|+|+|. .+ ...+++..
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~-~~Gidi~~ 99 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL-----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD-----VA-ARGLDIPQ 99 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH-----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-----TT-TCSSSCCC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-----hh-hcCCCCcc
Confidence 447999999999999999888765 46788899998776554433 2 3478999993 22 34567888
Q ss_pred ccEEEE
Q 008605 421 LRCAIL 426 (560)
Q Consensus 421 l~~LVi 426 (560)
++++|.
T Consensus 100 v~~Vi~ 105 (212)
T 3eaq_A 100 VDLVVH 105 (212)
T ss_dssp BSEEEE
T ss_pred CcEEEE
Confidence 888874
No 162
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=82.06 E-value=25 Score=34.45 Aligned_cols=52 Identities=12% Similarity=0.111 Sum_probs=30.0
Q ss_pred HHHHHHHHHhccccCCCccEEEEccccccCC--CCChHHHHHHHHhhCCCCCcEEEEe
Q 008605 404 PGRFMFLIKEGILQLINLRCAILDEVDILFN--DEDFEVALQSLISSSPVTAQYLFVT 459 (560)
Q Consensus 404 P~~L~~ll~~~~~~l~~l~~LViDEah~ll~--d~~f~~~l~~Il~~~~~~~Q~IllS 459 (560)
...+...+....- .--+|||||+|.+.. ...+...+..+....+ +..+|+.+
T Consensus 124 ~~~l~~~l~~~~~---~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~g 177 (357)
T 2fna_A 124 FANLLESFEQASK---DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLK-RIKFIMSG 177 (357)
T ss_dssp HHHHHHHHHHTCS---SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCT-TEEEEEEE
T ss_pred HHHHHHHHHhcCC---CCeEEEEECHHHhhccCchhHHHHHHHHHHcCC-CeEEEEEc
Confidence 4455555544211 233789999999863 2456677777766542 44445443
No 163
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=81.85 E-value=1.5 Score=43.24 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCCcchhhcH
Q 008605 304 EGKSCILADQSGSGKTLAYL 323 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~l 323 (560)
.|.-+++.+++|+|||....
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~ 53 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVR 53 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHH
Confidence 46678899999999997543
No 164
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=81.77 E-value=11 Score=40.52 Aligned_cols=91 Identities=14% Similarity=0.174 Sum_probs=64.2
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhc----CCCcEEEECHHHHHHHHHhccccCC
Q 008605 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ----EGVDVLIATPGRFMFLIKEGILQLI 419 (560)
Q Consensus 344 ~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~----~~~~IlV~TP~~L~~ll~~~~~~l~ 419 (560)
.+.++||.|+++.-+..++..++.... .++.+..++|+.....+...+. ...+|||+|. .+ ...+++.
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~--~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~-~~GiDip 409 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFK--KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VG-ARGMDFP 409 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHT--TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GG-TSSCCCT
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhcc--CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----hh-hcCCCcc
Confidence 456899999999999999999987753 3678889999987765543332 4589999994 22 3467888
Q ss_pred CccEEEEccccccCCCCChHHHHHHHHh
Q 008605 420 NLRCAILDEVDILFNDEDFEVALQSLIS 447 (560)
Q Consensus 420 ~l~~LViDEah~ll~d~~f~~~l~~Il~ 447 (560)
++++||.-..- ......++++=+
T Consensus 410 ~v~~VI~~~~p-----~s~~~y~Qr~GR 432 (563)
T 3i5x_A 410 NVHEVLQIGVP-----SELANYIHRIGR 432 (563)
T ss_dssp TCCEEEEESCC-----SSTTHHHHHHTT
T ss_pred cCCEEEEECCC-----CchhhhhhhcCc
Confidence 89988865542 334444555533
No 165
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=81.75 E-value=2 Score=53.70 Aligned_cols=45 Identities=13% Similarity=0.135 Sum_probs=30.5
Q ss_pred HHHHHc------CCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCH
Q 008605 299 FPPVVE------GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTA 355 (560)
Q Consensus 299 ip~il~------g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~Ptr 355 (560)
+..++. ++++++.+|+|+|||....-.+.... ..+.+++|+..--
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~------------~~G~~v~Fi~~e~ 1465 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ------------REGKTCAFIDAEH 1465 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHH------------TTTCCEEEECTTS
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHH------------HcCCcEEEEEccc
Confidence 556665 67899999999999986544333222 1355788887553
No 166
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=81.46 E-value=4.4 Score=38.09 Aligned_cols=35 Identities=20% Similarity=0.188 Sum_probs=26.8
Q ss_pred CcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEc
Q 008605 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILA 352 (560)
Q Consensus 306 ~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~ 352 (560)
-.+++..++|.|||.+++--++..+. .+-+++|+-
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g------------~G~rV~~vQ 63 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVG------------HGKNVGVVQ 63 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHH------------TTCCEEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH------------CCCeEEEEE
Confidence 47999999999999987776666653 255688774
No 167
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=80.88 E-value=1.2 Score=42.20 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=17.5
Q ss_pred HcCCcEEEEcCCCCcchhhcHH
Q 008605 303 VEGKSCILADQSGSGKTLAYLL 324 (560)
Q Consensus 303 l~g~dvlv~apTGSGKTla~ll 324 (560)
..|.-+.+.+|+|+|||.....
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~ 49 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQ 49 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHH
Confidence 3567789999999999976443
No 168
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=80.86 E-value=1 Score=39.49 Aligned_cols=20 Identities=15% Similarity=0.157 Sum_probs=17.1
Q ss_pred HHcCCcEEEEcCCCCcchhh
Q 008605 302 VVEGKSCILADQSGSGKTLA 321 (560)
Q Consensus 302 il~g~dvlv~apTGSGKTla 321 (560)
...+.++++.+++|+|||..
T Consensus 24 ~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHH
T ss_pred hCCCCcEEEECCCCccHHHH
Confidence 45678999999999999965
No 169
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=79.64 E-value=1.2 Score=39.22 Aligned_cols=21 Identities=14% Similarity=0.164 Sum_probs=17.4
Q ss_pred HHcCCcEEEEcCCCCcchhhc
Q 008605 302 VVEGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 302 il~g~dvlv~apTGSGKTla~ 322 (560)
...+.++++.+|+|+|||..+
T Consensus 21 a~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHHH
T ss_pred hCCCCCEEEECCCCCCHHHHH
Confidence 346678999999999999754
No 170
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=78.83 E-value=2.7 Score=43.27 Aligned_cols=39 Identities=21% Similarity=0.215 Sum_probs=24.5
Q ss_pred CCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCH
Q 008605 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTA 355 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~Ptr 355 (560)
|.-+++.+|+|+|||.. ++.++..+.. .+..++|+..-.
T Consensus 61 G~i~~I~GppGsGKSTL-al~la~~~~~-----------~gg~VlyId~E~ 99 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTL-ALHAIAEAQK-----------MGGVAAFIDAEH 99 (356)
T ss_dssp TEEEEEEESTTSSHHHH-HHHHHHHHHH-----------TTCCEEEEESSC
T ss_pred CcEEEEECCCCCCHHHH-HHHHHHHHHh-----------cCCeEEEEeccc
Confidence 45688999999999964 3344433322 134577776543
No 171
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=78.73 E-value=15 Score=39.68 Aligned_cols=78 Identities=17% Similarity=0.196 Sum_probs=58.7
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHh---c-CCCcEEEECHHHHHHHHHhccccCC
Q 008605 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLI 419 (560)
Q Consensus 344 ~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l---~-~~~~IlV~TP~~L~~ll~~~~~~l~ 419 (560)
.+.++||.|+|+.-+..++..+++... .++.+..++|+.....+...+ . ...+|||+|- .+ ...+++.
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~--~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~~-~~GiDip 358 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFK--KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VG-ARGMDFP 358 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHT--TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GG-TSSCCCT
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhc--CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----hh-hcCCCcc
Confidence 356899999999999999999987653 367888999998765554333 2 4588999994 22 3467888
Q ss_pred CccEEEEccc
Q 008605 420 NLRCAILDEV 429 (560)
Q Consensus 420 ~l~~LViDEa 429 (560)
++++||.-..
T Consensus 359 ~v~~VI~~~~ 368 (579)
T 3sqw_A 359 NVHEVLQIGV 368 (579)
T ss_dssp TCCEEEEESC
T ss_pred cCCEEEEcCC
Confidence 8999887554
No 172
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=77.97 E-value=2.5 Score=45.96 Aligned_cols=19 Identities=37% Similarity=0.386 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCCcchhhc
Q 008605 304 EGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~ 322 (560)
.|..+++.+|+|+|||...
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4778999999999999753
No 173
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=77.78 E-value=4.1 Score=37.35 Aligned_cols=72 Identities=14% Similarity=0.156 Sum_probs=44.2
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHH---HHhc-CCCcEEEECHHHHHHHHHhccccCC
Q 008605 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQL---ENLQ-EGVDVLIATPGRFMFLIKEGILQLI 419 (560)
Q Consensus 344 ~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~---~~l~-~~~~IlV~TP~~L~~ll~~~~~~l~ 419 (560)
.+.++||.++++.-+..+...++.. ++.+..++|+.+..++. ..+. ....|||+|. .+. ..+++.
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~-~Gldi~ 113 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHE-----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAA-RGLDIS 113 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHT-----TCCEEEEC--------CHHHHHHHHTSSSEEEEEC------------CCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHc-----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-----hhh-cCCCcc
Confidence 3567999999999999999888764 46788888887654432 2222 4578999992 222 345677
Q ss_pred CccEEEE
Q 008605 420 NLRCAIL 426 (560)
Q Consensus 420 ~l~~LVi 426 (560)
.+.++|.
T Consensus 114 ~~~~VI~ 120 (185)
T 2jgn_A 114 NVKHVIN 120 (185)
T ss_dssp SBSEEEE
T ss_pred cCCEEEE
Confidence 8888776
No 174
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=77.39 E-value=6.2 Score=42.29 Aligned_cols=52 Identities=17% Similarity=0.284 Sum_probs=38.3
Q ss_pred cCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhhc
Q 008605 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK 370 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~ 370 (560)
.|....+.+-||||||++.. .+ ... .+..+|||+|+...|.|+++.++.+..
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a--~l---~~~----------~~~p~lvv~~~~~~A~~l~~~l~~~~~ 64 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVA--EI---AER----------HAGPVVLIAPDMQNALRLHDEISQFTD 64 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHH--HH---HHH----------SSSCEEEEESSHHHHHHHHHHHHHTCS
T ss_pred CCCeEEEeCCCchHHHHHHH--HH---HHH----------hCCCEEEEeCCHHHHHHHHHHHHhhCC
Confidence 35678899999999987532 21 111 122389999999999999999998853
No 175
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=76.71 E-value=12 Score=38.10 Aligned_cols=72 Identities=17% Similarity=0.176 Sum_probs=54.3
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHh---c-CCCcEEEECHHHHHHHHHhccccCC
Q 008605 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLI 419 (560)
Q Consensus 344 ~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l---~-~~~~IlV~TP~~L~~ll~~~~~~l~ 419 (560)
.+.++||.+++++-+..+++.+++. ++.+..++|+....++...+ . ...+|+|+|. .+. ..+++.
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~-~Gidip 343 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE-----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAA-RGLDIS 343 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHH-TTSCCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC-----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhh-cCCCcc
Confidence 4668999999999999999988764 46788899998765544333 2 3578999994 333 356788
Q ss_pred CccEEEE
Q 008605 420 NLRCAIL 426 (560)
Q Consensus 420 ~l~~LVi 426 (560)
.++++|.
T Consensus 344 ~v~~Vi~ 350 (417)
T 2i4i_A 344 NVKHVIN 350 (417)
T ss_dssp CEEEEEE
T ss_pred cCCEEEE
Confidence 8988875
No 176
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=75.81 E-value=7.3 Score=39.06 Aligned_cols=58 Identities=16% Similarity=0.097 Sum_probs=30.8
Q ss_pred CCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHH-HHHHHHHHHhh
Q 008605 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAEL-ASQVLSNCRSL 368 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreL-a~Qi~~~l~~l 368 (560)
|.-+++.+++|+|||...+--+........ ....+..++|+.--..+ ..++...++.+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~------~gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPE------KGGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGG------GTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccc------cCCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 456889999999999754433322111100 00114578888654332 34444444444
No 177
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=74.76 E-value=5.5 Score=41.04 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=18.0
Q ss_pred cCCcEEEEcCCCCcchhhcHHHHHHHH
Q 008605 304 EGKSCILADQSGSGKTLAYLLPVIQRL 330 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~llpil~~l 330 (560)
.|.-++|.+++|+|||... +.++..+
T Consensus 73 ~G~li~I~G~pGsGKTtla-l~la~~~ 98 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLA-LAIVAQA 98 (366)
T ss_dssp TTSEEEEEESTTSSHHHHH-HHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHH-HHHHHHH
Confidence 3466889999999999654 3344333
No 178
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=74.22 E-value=2.1 Score=43.81 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCCcchhhcHH
Q 008605 305 GKSCILADQSGSGKTLAYLL 324 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~ll 324 (560)
|.=+++.|++|+|||...+-
T Consensus 46 G~LiiIaG~pG~GKTt~al~ 65 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMN 65 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHH
Confidence 44578899999999975433
No 179
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=73.55 E-value=2.2 Score=45.24 Aligned_cols=23 Identities=22% Similarity=0.211 Sum_probs=16.6
Q ss_pred cCCcEEEEcCCCCcchhhcHHHH
Q 008605 304 EGKSCILADQSGSGKTLAYLLPV 326 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~llpi 326 (560)
.|.=+++.|++|+|||...+--+
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia 218 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQA 218 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHH
Confidence 34558899999999997544333
No 180
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=73.52 E-value=2.9 Score=42.84 Aligned_cols=21 Identities=29% Similarity=0.306 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCCcchhhcHH
Q 008605 304 EGKSCILADQSGSGKTLAYLL 324 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~ll 324 (560)
.|+-+++.+++|+|||...+-
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~ 80 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALH 80 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 356789999999999976443
No 181
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=73.45 E-value=6.4 Score=39.40 Aligned_cols=20 Identities=25% Similarity=0.278 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCCcchhhcH
Q 008605 304 EGKSCILADQSGSGKTLAYL 323 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~l 323 (560)
.|.=+++.|++|+|||...+
T Consensus 67 ~G~l~li~G~pG~GKTtl~l 86 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFAL 86 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHH
Confidence 34568899999999996543
No 182
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=73.38 E-value=55 Score=32.40 Aligned_cols=94 Identities=13% Similarity=0.170 Sum_probs=63.8
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHh---c-CCCcEEEECHHHHHHHHHhccccCC
Q 008605 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLI 419 (560)
Q Consensus 344 ~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l---~-~~~~IlV~TP~~L~~ll~~~~~~l~ 419 (560)
...++||.++++.-+..+++.++.. ++.+..++|+....++...+ . ...+|+|+|. .+ ...+++.
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidip 310 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSE-----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VL-ARGIDIP 310 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GG-SSSCCCT
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhc-----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hh-hcCCCcc
Confidence 3568999999999999999988765 45778899988765543333 2 3478999994 22 3467888
Q ss_pred CccEEEEccccccCC-CCChHHHHHHHHhh
Q 008605 420 NLRCAILDEVDILFN-DEDFEVALQSLISS 448 (560)
Q Consensus 420 ~l~~LViDEah~ll~-d~~f~~~l~~Il~~ 448 (560)
.++++|.-+...+.. ..+....++++=+.
T Consensus 311 ~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~ 340 (395)
T 3pey_A 311 TVSMVVNYDLPTLANGQADPATYIHRIGRT 340 (395)
T ss_dssp TEEEEEESSCCBCTTSSBCHHHHHHHHTTS
T ss_pred cCCEEEEcCCCCCCcCCCCHHHhhHhcccc
Confidence 999998766654331 11344555555333
No 183
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=73.14 E-value=3.2 Score=46.90 Aligned_cols=16 Identities=38% Similarity=0.403 Sum_probs=14.1
Q ss_pred cEEEEcCCCCcchhhc
Q 008605 307 SCILADQSGSGKTLAY 322 (560)
Q Consensus 307 dvlv~apTGSGKTla~ 322 (560)
++++.+|||+|||...
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5999999999999764
No 184
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=72.08 E-value=13 Score=36.98 Aligned_cols=71 Identities=15% Similarity=0.208 Sum_probs=52.7
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHh---c-CCCcEEEECHHHHHHHHHhccccCCC
Q 008605 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLIN 420 (560)
Q Consensus 345 ~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l---~-~~~~IlV~TP~~L~~ll~~~~~~l~~ 420 (560)
+.++||.|++++-+..++..+... ++.+..++|+.....+...+ . ...+|+|+|- .+ ...+++..
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~-----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~-----va-~~Gidi~~ 96 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL-----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD-----VA-ARGLDIPQ 96 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT-----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS-----TT-TCSTTCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC-----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec-----hh-hcCccccc
Confidence 457999999999999988888654 56888999998766554433 2 3588999993 22 34567888
Q ss_pred ccEEEE
Q 008605 421 LRCAIL 426 (560)
Q Consensus 421 l~~LVi 426 (560)
+.++|.
T Consensus 97 v~~VI~ 102 (300)
T 3i32_A 97 VDLVVH 102 (300)
T ss_dssp CSEEEE
T ss_pred eeEEEE
Confidence 888875
No 185
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=72.07 E-value=3.7 Score=40.38 Aligned_cols=39 Identities=18% Similarity=0.138 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHHhC--CCCcEEEEeCchHHHHHHHHHHHhh
Q 008605 514 LNKKSALLQLIEKS--PVSKTIVFCNKVCFSYKCNNLFGFF 552 (560)
Q Consensus 514 ~~K~~~L~~lL~~~--~~~ktIIFcnS~~~a~~la~~Lk~l 552 (560)
..|+..|.+++... .+.++||||+++..++.++..|...
T Consensus 95 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~ 135 (271)
T 1z5z_A 95 SGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKE 135 (271)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHh
Confidence 47888899888765 6789999999999999999999763
No 186
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=71.80 E-value=30 Score=34.17 Aligned_cols=52 Identities=17% Similarity=0.027 Sum_probs=28.5
Q ss_pred CCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHH
Q 008605 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKL 470 (560)
Q Consensus 419 ~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l 470 (560)
.+.+++|||++-.+..+......+..+...+.+..-++.+.++...+..+.+
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~~~~~~~~ 230 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVA 230 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHH
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCcHHHHHHH
Confidence 3568999999955542322334444444444344335567777555544433
No 187
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=70.96 E-value=4.1 Score=42.50 Aligned_cols=27 Identities=15% Similarity=0.230 Sum_probs=20.0
Q ss_pred cCCcEEEEcCCCCcchhhcHHHHHHHHH
Q 008605 304 EGKSCILADQSGSGKTLAYLLPVIQRLR 331 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~llpil~~l~ 331 (560)
...+++|.|+||||||... ..++..+.
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~ 78 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGL 78 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHH
Confidence 3579999999999999874 34444443
No 188
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.90 E-value=1.1 Score=47.43 Aligned_cols=53 Identities=25% Similarity=0.429 Sum_probs=34.6
Q ss_pred ccccccccCCCHHHHHHHHHC---CCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhh
Q 008605 266 SRKSFKELGCSDYMIESLKRQ---NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLA 321 (560)
Q Consensus 266 ~~~sF~~l~L~~~ll~~L~~~---g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla 321 (560)
+..+|++++--+...+.|.+. -+.+|.-++...+ .-.+.+|+.+|+|+|||+.
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~---~~prGvLLyGPPGTGKTll 231 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI---RAPKGALMYGPPGTGKTLL 231 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC---CCCCEEEEESCTTSSHHHH
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeeEEECcCCCCHHHH
Confidence 456899999888888877642 1122322222211 1236899999999999975
No 189
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=70.78 E-value=8.5 Score=43.30 Aligned_cols=19 Identities=32% Similarity=0.396 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCCcchhhc
Q 008605 304 EGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~ 322 (560)
.+.++++++|+|+|||...
T Consensus 206 ~~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp SSCEEEEECCTTSSHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHH
Confidence 3568999999999999764
No 190
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=70.64 E-value=3.1 Score=41.23 Aligned_cols=53 Identities=17% Similarity=0.283 Sum_probs=31.6
Q ss_pred cccccccCCCHHHHHHHHHCCCCCChHHHH-HHHHH--HHcCCcEEEEcCCCCcchhhc
Q 008605 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQA-MAFPP--VVEGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 267 ~~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~-~aip~--il~g~dvlv~apTGSGKTla~ 322 (560)
..+|++++-.+.+.+.|.+.- . .+... +.+.. +..++.+++.+|+|+|||+..
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v-~--~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELV-Q--YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHH-H--HHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHH-H--HHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 357888887777777775420 0 00000 00111 123567999999999999753
No 191
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=70.64 E-value=29 Score=36.46 Aligned_cols=94 Identities=10% Similarity=0.035 Sum_probs=59.9
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHh----cCCCcEEEECHHHHHHHHHhccccCCC
Q 008605 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL----QEGVDVLIATPGRFMFLIKEGILQLIN 420 (560)
Q Consensus 345 ~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~ll~~~~~~l~~ 420 (560)
+...+|++...+-+..+.+.+.+.. .++..++|+.........+ ....+|+|+|+..+ ...+++.+
T Consensus 347 ~~~~~ivf~~~~~~~~l~~~L~~~~-----~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~-----~~GiDip~ 416 (510)
T 2oca_A 347 DENAFVMFKHVSHGKAIFDLIKNEY-----DKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVF-----STGISVKN 416 (510)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTTC-----SSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHH-----HHSCCCCS
T ss_pred CCCeEEEEecHHHHHHHHHHHHHcC-----CCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChh-----hccccccc
Confidence 3456666666777766777666542 3788899988765443322 24578999997655 33568889
Q ss_pred ccEEEEccccccCCCCChHHHHHHHHhhCC
Q 008605 421 LRCAILDEVDILFNDEDFEVALQSLISSSP 450 (560)
Q Consensus 421 l~~LViDEah~ll~d~~f~~~l~~Il~~~~ 450 (560)
++++|+..+..-. ..+.+.+-++-+.-+
T Consensus 417 v~~vi~~~~~~s~--~~~~Q~~GR~gR~g~ 444 (510)
T 2oca_A 417 LHHVVLAHGVKSK--IIVLQTIGRVLRKHG 444 (510)
T ss_dssp EEEEEESSCCCSC--CHHHHHHHHHHTTTC
T ss_pred CcEEEEeCCCCCH--HHHHHHHhcccccCC
Confidence 9999998877332 335555555544433
No 192
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=70.24 E-value=54 Score=36.25 Aligned_cols=92 Identities=12% Similarity=0.148 Sum_probs=64.8
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHh---c-CCCcEEEECHHHHHHHHHhccccCCC
Q 008605 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLIN 420 (560)
Q Consensus 345 ~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l---~-~~~~IlV~TP~~L~~ll~~~~~~l~~ 420 (560)
+.++||.++|+.-+..+.+.+... ++.+..++|+....++...+ . ...+|+|||- .+ ...+++..
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~-----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~l-~~GlDip~ 513 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEI-----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LL-REGLDIPE 513 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----CC-STTCCCTT
T ss_pred CCeEEEEECCHHHHHHHHHHHHhc-----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----hh-hCCcccCC
Confidence 568999999999999999888775 45778888887665544432 2 3589999984 22 34677889
Q ss_pred ccEEEEccccccCCCCChHHHHHHHHh
Q 008605 421 LRCAILDEVDILFNDEDFEVALQSLIS 447 (560)
Q Consensus 421 l~~LViDEah~ll~d~~f~~~l~~Il~ 447 (560)
++++|+=+++...--......+.++=+
T Consensus 514 v~lVi~~d~d~~G~p~s~~~~iQr~GR 540 (661)
T 2d7d_A 514 VSLVAILDADKEGFLRSERSLIQTIGR 540 (661)
T ss_dssp EEEEEETTTTCCTTTTSHHHHHHHHHT
T ss_pred CCEEEEeCcccccCCCCHHHHHHHhCc
Confidence 999999998865311234555555543
No 193
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=69.99 E-value=1.3 Score=43.28 Aligned_cols=52 Identities=19% Similarity=0.306 Sum_probs=32.1
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHH-HHHHHHH--HcCCcEEEEcCCCCcchhhc
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQ-AMAFPPV--VEGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ-~~aip~i--l~g~dvlv~apTGSGKTla~ 322 (560)
.+|+++.-.+..++.|...=. .+.+ .+.+..+ ..++.+++.+|+|+|||...
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVE---LPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTH---HHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHH---HHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 578888888887777765210 0000 1111111 24568999999999999753
No 194
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=69.58 E-value=9.2 Score=43.81 Aligned_cols=18 Identities=28% Similarity=0.386 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCCcchhhc
Q 008605 305 GKSCILADQSGSGKTLAY 322 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~ 322 (560)
..++++++|+|+|||...
T Consensus 191 ~~~vlL~G~pG~GKT~la 208 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIV 208 (854)
T ss_dssp CCCCEEEECTTSCHHHHH
T ss_pred CCceEEEcCCCCCHHHHH
Confidence 357999999999999753
No 195
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=68.08 E-value=4.5 Score=43.71 Aligned_cols=39 Identities=18% Similarity=0.081 Sum_probs=24.9
Q ss_pred HHHHHCCCCCChHHHHHHHH-HHHcCCcEEEEcCCCCcchhh
Q 008605 281 ESLKRQNFLRPSQIQAMAFP-PVVEGKSCILADQSGSGKTLA 321 (560)
Q Consensus 281 ~~L~~~g~~~pt~iQ~~aip-~il~g~dvlv~apTGSGKTla 321 (560)
..|.+.|. +++.+..-+. .+..|..+++++|||||||..
T Consensus 237 ~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 237 IDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 33444552 2333333333 356788999999999999975
No 196
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=68.04 E-value=44 Score=33.30 Aligned_cols=86 Identities=17% Similarity=0.218 Sum_probs=59.7
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHh---c-CCCcEEEECHHHHHHHHHhccccCC
Q 008605 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLI 419 (560)
Q Consensus 344 ~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l---~-~~~~IlV~TP~~L~~ll~~~~~~l~ 419 (560)
.+.++||.+++++-+..+++.+... ++.+..++|+....++...+ . ....|+|+|. .+ ...+++.
T Consensus 249 ~~~~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~-~~Gidi~ 317 (391)
T 1xti_A 249 EFNQVVIFVKSVQRCIALAQLLVEQ-----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----LF-GRGMDIE 317 (391)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESC-----CC-SSCBCCT
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhC-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECC-----hh-hcCCCcc
Confidence 3568999999999999999888764 46788889987765543333 2 3578999993 12 2356788
Q ss_pred CccEEEEccccccCCCCChHHHHHHH
Q 008605 420 NLRCAILDEVDILFNDEDFEVALQSL 445 (560)
Q Consensus 420 ~l~~LViDEah~ll~d~~f~~~l~~I 445 (560)
.++++|.-+.. ......++++
T Consensus 318 ~~~~Vi~~~~p-----~s~~~~~Qr~ 338 (391)
T 1xti_A 318 RVNIAFNYDMP-----EDSDTYLHRV 338 (391)
T ss_dssp TEEEEEESSCC-----SSHHHHHHHH
T ss_pred cCCEEEEeCCC-----CCHHHHHHhc
Confidence 89998875542 3444445554
No 197
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=67.41 E-value=5.7 Score=38.80 Aligned_cols=45 Identities=24% Similarity=0.420 Sum_probs=30.6
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHH---------HcCCcEEEEcCCCCcchhhc
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPV---------VEGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~i---------l~g~dvlv~apTGSGKTla~ 322 (560)
.+|+++.-.+..++.|... -.++.. ..++.+++.+|+|+|||...
T Consensus 18 ~~~~~i~G~~~~~~~l~~~----------i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 18 VEWTDIAGQDVAKQALQEM----------VILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCGGGSCCCHHHHHHHHHH----------THHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCHHHhCChHHHHHHHHHH----------HHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 5788887777777777542 011111 13578999999999999753
No 198
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=67.38 E-value=5.7 Score=37.99 Aligned_cols=53 Identities=23% Similarity=0.330 Sum_probs=30.3
Q ss_pred cccccccCCCHHHHHHHHHCC--CCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhc
Q 008605 267 RKSFKELGCSDYMIESLKRQN--FLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 267 ~~sF~~l~L~~~ll~~L~~~g--~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~ 322 (560)
..+|+++.-.+.+.+.|...- +..+..++.. .....+.+++.+|+|+|||...
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKL---GGKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHHH
T ss_pred CCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHc---CCCCCCeEEEECcCCCCHHHHH
Confidence 357899887777777765420 0011000000 0112357999999999999753
No 199
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=67.21 E-value=16 Score=36.04 Aligned_cols=74 Identities=18% Similarity=0.293 Sum_probs=53.5
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHh---c-CCCcEEEECHHHHHHHHHhccccCC
Q 008605 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLI 419 (560)
Q Consensus 344 ~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l---~-~~~~IlV~TP~~L~~ll~~~~~~l~ 419 (560)
.+.++||.+++++-+..+++.++.. ++.+..++|+....++...+ . ...+|+|+|. .+.. .+++.
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~-Gid~~ 305 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDI-----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMSR-GIDVN 305 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT-----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THHH-HCCCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc-----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhc-CCCcc
Confidence 3567999999999999999988865 46788889987765543333 2 3578999993 2233 45677
Q ss_pred CccEEEEcc
Q 008605 420 NLRCAILDE 428 (560)
Q Consensus 420 ~l~~LViDE 428 (560)
.++++|.-.
T Consensus 306 ~~~~Vi~~~ 314 (367)
T 1hv8_A 306 DLNCVINYH 314 (367)
T ss_dssp CCSEEEESS
T ss_pred cCCEEEEec
Confidence 888887643
No 200
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=67.14 E-value=8.6 Score=45.71 Aligned_cols=79 Identities=18% Similarity=0.217 Sum_probs=60.1
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHh---c-CCCcEEEECHHHHHHHHHhccccCC
Q 008605 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLI 419 (560)
Q Consensus 344 ~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l---~-~~~~IlV~TP~~L~~ll~~~~~~l~ 419 (560)
.+.+++|+|++++-+..+++.+++.. .++++..++|+....+....+ . ...+|||||. .+ ...+++.
T Consensus 811 ~g~qvlvf~~~v~~~~~l~~~L~~~~---p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~-----v~-e~GiDip 881 (1151)
T 2eyq_A 811 RGGQVYYLYNDVENIQKAAERLAELV---PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----II-ETGIDIP 881 (1151)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHHC---TTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS-----TT-GGGSCCT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhC---CCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECC-----cc-eeeeccc
Confidence 46789999999999999999988774 457889999998765543333 2 4589999994 22 3467888
Q ss_pred CccEEEEccccc
Q 008605 420 NLRCAILDEVDI 431 (560)
Q Consensus 420 ~l~~LViDEah~ 431 (560)
++.++|+..++.
T Consensus 882 ~v~~VIi~~~~~ 893 (1151)
T 2eyq_A 882 TANTIIIERADH 893 (1151)
T ss_dssp TEEEEEETTTTS
T ss_pred CCcEEEEeCCCC
Confidence 999999887764
No 201
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=67.06 E-value=89 Score=31.12 Aligned_cols=120 Identities=14% Similarity=0.161 Sum_probs=71.7
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHh---c-CCCcEEEECHHHHHHHHHhccccCCC
Q 008605 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLIN 420 (560)
Q Consensus 345 ~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l---~-~~~~IlV~TP~~L~~ll~~~~~~l~~ 420 (560)
+.++||.|+++.-+..+++.+.+. ++.+..++|+....++...+ . ...+|||+|. .+ ...+++..
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidip~ 334 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE-----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VC-ARGIDVEQ 334 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GG-TSSCCCTT
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC-----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----cc-ccCCCccC
Confidence 457999999999999999988875 45778899988765554333 2 3578999994 22 34678889
Q ss_pred ccEEEEccccccCC-CCChHHHHHHHHhhCCCC---CcEEEEeccCCHHHHHHHHHhCC
Q 008605 421 LRCAILDEVDILFN-DEDFEVALQSLISSSPVT---AQYLFVTATLPVEIYNKLVEVFP 475 (560)
Q Consensus 421 l~~LViDEah~ll~-d~~f~~~l~~Il~~~~~~---~Q~IllSATlp~~v~~~l~~~~~ 475 (560)
++++|.-..-.-.. .......++++=+..... .-+++++..-.......+.+.+.
T Consensus 335 ~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~ 393 (412)
T 3fht_A 335 VSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFN 393 (412)
T ss_dssp EEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHC
Confidence 99887533321110 123445555553332222 22444443322334444555544
No 202
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=66.66 E-value=23 Score=36.08 Aligned_cols=75 Identities=17% Similarity=0.264 Sum_probs=50.9
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeC--------CcchHHHHH---Hhc-CCCcEEEECHHHHHHHH
Q 008605 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG--------GFRQKTQLE---NLQ-EGVDVLIATPGRFMFLI 411 (560)
Q Consensus 344 ~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~g--------g~~~~~~~~---~l~-~~~~IlV~TP~~L~~ll 411 (560)
.+.++||.++++.-+..+.+.++.. ++.+..++| +....++.. .+. ..++|||+|- .+
T Consensus 360 ~~~k~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~-----~~ 429 (494)
T 1wp9_A 360 QNSKIIVFTNYRETAKKIVNELVKD-----GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATS-----VG 429 (494)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHT-----TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECG-----GG
T ss_pred CCCeEEEEEccHHHHHHHHHHHHHc-----CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECC-----cc
Confidence 3568999999999999999988875 467788888 544433322 222 3478999993 12
Q ss_pred HhccccCCCccEEEEccc
Q 008605 412 KEGILQLINLRCAILDEV 429 (560)
Q Consensus 412 ~~~~~~l~~l~~LViDEa 429 (560)
...+++..++++|+-+.
T Consensus 430 -~~Gldl~~~~~Vi~~d~ 446 (494)
T 1wp9_A 430 -EEGLDVPEVDLVVFYEP 446 (494)
T ss_dssp -GGGGGSTTCCEEEESSC
T ss_pred -ccCCCchhCCEEEEeCC
Confidence 34567888888886443
No 203
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=66.45 E-value=50 Score=36.59 Aligned_cols=91 Identities=13% Similarity=0.066 Sum_probs=62.9
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHH---hc-CCCcEEEECHHHHHHHHHhccccCCC
Q 008605 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLEN---LQ-EGVDVLIATPGRFMFLIKEGILQLIN 420 (560)
Q Consensus 345 ~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~---l~-~~~~IlV~TP~~L~~ll~~~~~~l~~ 420 (560)
+.++||.++|+..+..+.+.+... ++.+..++|+....++... +. ...+|+|||- .+ ...+++..
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~-----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~-----~l-~~GlDip~ 507 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEH-----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-----LL-REGLDIPE 507 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----CC-CTTCCCTT
T ss_pred CCEEEEEECCHHHHHHHHHHHHhc-----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC-----hh-hcCccCCC
Confidence 458999999999999999888765 4577788888766554433 33 3489999982 12 34667889
Q ss_pred ccEEEEccccccCCCCChHHHHHHHH
Q 008605 421 LRCAILDEVDILFNDEDFEVALQSLI 446 (560)
Q Consensus 421 l~~LViDEah~ll~d~~f~~~l~~Il 446 (560)
++++|+=+++...--......++++=
T Consensus 508 v~lVI~~d~d~~G~p~s~~~~iQr~G 533 (664)
T 1c4o_A 508 VSLVAILDADKEGFLRSERSLIQTIG 533 (664)
T ss_dssp EEEEEETTTTSCSGGGSHHHHHHHHG
T ss_pred CCEEEEeCCcccCCCCCHHHHHHHHC
Confidence 99999988875421123444444443
No 204
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=66.26 E-value=2 Score=41.10 Aligned_cols=52 Identities=21% Similarity=0.254 Sum_probs=29.0
Q ss_pred ccccccCCCHHHHHHHHHC--CCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhc
Q 008605 268 KSFKELGCSDYMIESLKRQ--NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~--g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~ 322 (560)
.+|+++.-.+.+.+.|.++ .+..|..+... .+...+.+++.+|+|+|||...
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~---g~~~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQL---GAKVPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC---------CCCCCEEEEESCTTSSHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHc---CCCCCceEEEECCCCCCHHHHH
Confidence 4677777667776666542 01111111110 0123467999999999999753
No 205
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=66.03 E-value=6.4 Score=39.92 Aligned_cols=19 Identities=37% Similarity=0.476 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCCcchhhc
Q 008605 304 EGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~ 322 (560)
...++++.+|+|+|||...
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3468999999999999854
No 206
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=65.63 E-value=19 Score=37.37 Aligned_cols=69 Identities=22% Similarity=0.236 Sum_probs=52.3
Q ss_pred EEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHh---c-CCCcEEEECHHHHHHHHHhccccCCCcc
Q 008605 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLINLR 422 (560)
Q Consensus 347 ~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l---~-~~~~IlV~TP~~L~~ll~~~~~~l~~l~ 422 (560)
.+||.|+++.-+..+++.+... ++.+..++|+....++...+ + ...+|||+|. . -...+++.+++
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~-----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----v-~~rGlDi~~v~ 370 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK-----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS-----V-ASRGLDIKNIK 370 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT-----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG-----G-GTSSCCCTTCC
T ss_pred CEEEEEeCcHHHHHHHHHHHhC-----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch-----h-hhCCCCcccCC
Confidence 3999999999999999888764 46788899998766554433 2 3589999995 2 23467888898
Q ss_pred EEEE
Q 008605 423 CAIL 426 (560)
Q Consensus 423 ~LVi 426 (560)
++|.
T Consensus 371 ~VI~ 374 (434)
T 2db3_A 371 HVIN 374 (434)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8876
No 207
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=65.18 E-value=10 Score=37.34 Aligned_cols=44 Identities=18% Similarity=0.105 Sum_probs=31.6
Q ss_pred HHHHHHHHHCCCCCChHHHHHH-HHHHHcCC-----cEEEEcCCCCcchhhcH
Q 008605 277 DYMIESLKRQNFLRPSQIQAMA-FPPVVEGK-----SCILADQSGSGKTLAYL 323 (560)
Q Consensus 277 ~~ll~~L~~~g~~~pt~iQ~~a-ip~il~g~-----dvlv~apTGSGKTla~l 323 (560)
..+.+.|+.+||. +++... +..++.++ .+++.+|.|+|||+.+.
T Consensus 73 n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 73 NRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 4677888888875 555333 45566554 48899999999998654
No 208
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=64.73 E-value=31 Score=34.70 Aligned_cols=72 Identities=10% Similarity=0.165 Sum_probs=52.8
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHh---c-CCCcEEEECHHHHHHHHHhccccCCC
Q 008605 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLIN 420 (560)
Q Consensus 345 ~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l---~-~~~~IlV~TP~~L~~ll~~~~~~l~~ 420 (560)
..++||.+++++-+..+++.++.. ++.+..++|+....++...+ . ....|||+|. .+ ...+++..
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~-~~Gidip~ 326 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDL-----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----LL-TRGIDIQA 326 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHH-----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----CS-SSSCCCTT
T ss_pred CCcEEEEEecHHHHHHHHHHHHhc-----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----cc-ccCCCccC
Confidence 458999999999999999988875 35778889988765543333 2 3478999993 22 23567888
Q ss_pred ccEEEEc
Q 008605 421 LRCAILD 427 (560)
Q Consensus 421 l~~LViD 427 (560)
++++|.-
T Consensus 327 ~~~Vi~~ 333 (400)
T 1s2m_A 327 VNVVINF 333 (400)
T ss_dssp EEEEEES
T ss_pred CCEEEEe
Confidence 8888753
No 209
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=64.61 E-value=6.6 Score=42.26 Aligned_cols=42 Identities=21% Similarity=0.366 Sum_probs=28.4
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhh
Q 008605 279 MIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLA 321 (560)
Q Consensus 279 ll~~L~~~g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla 321 (560)
+...|.. .+..-...-..++-++..+.++++.+|+|+|||..
T Consensus 16 l~~~l~~-~ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 16 LSSSLEK-GLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp HHHHHHT-TCSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred HHHHHHh-hhHHHHHHHHHHHHHHhcCCeeEeecCchHHHHHH
Confidence 3344443 34333444455566677889999999999999975
No 210
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=64.41 E-value=51 Score=32.76 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=14.2
Q ss_pred CCcEEEEcCCCCcchhhc
Q 008605 305 GKSCILADQSGSGKTLAY 322 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~ 322 (560)
++-+++++++|+|||...
T Consensus 104 ~~vi~ivG~~GsGKTTl~ 121 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSC 121 (306)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CeEEEEEcCCCChHHHHH
Confidence 345778999999999754
No 211
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=64.21 E-value=7.8 Score=38.84 Aligned_cols=46 Identities=17% Similarity=0.300 Sum_probs=31.1
Q ss_pred cccccccCCCHHHHHHHHHCCCCCChHHHHHHHH----HHHc-----CCcEEEEcCCCCcchhhc
Q 008605 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFP----PVVE-----GKSCILADQSGSGKTLAY 322 (560)
Q Consensus 267 ~~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip----~il~-----g~dvlv~apTGSGKTla~ 322 (560)
..+|++++-.+.+.+.|.+. -.+| .+.. .+.+++.+|+|+|||+..
T Consensus 8 ~~~~~di~G~~~~k~~l~~~----------v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEA----------VILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHH----------HHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHH----------HHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 35799998888777777542 1111 1211 267999999999999753
No 212
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=64.11 E-value=21 Score=36.19 Aligned_cols=70 Identities=20% Similarity=0.207 Sum_probs=52.3
Q ss_pred CEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHh---c-CCCcEEEECHHHHHHHHHhccccCCCc
Q 008605 346 PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLINL 421 (560)
Q Consensus 346 ~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l---~-~~~~IlV~TP~~L~~ll~~~~~~l~~l 421 (560)
.++||.|+++.-+..+++.++.. ++.+..++|+....++...+ . ....|||+|. .+ ...+++..+
T Consensus 277 ~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidi~~v 345 (410)
T 2j0s_A 277 TQAVIFCNTKRKVDWLTEKMREA-----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----VW-ARGLDVPQV 345 (410)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----GG-SSSCCCTTE
T ss_pred CcEEEEEcCHHHHHHHHHHHHhC-----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-----hh-hCcCCcccC
Confidence 47999999999999999888764 45778889988765543333 2 3578999994 22 346778889
Q ss_pred cEEEE
Q 008605 422 RCAIL 426 (560)
Q Consensus 422 ~~LVi 426 (560)
+++|.
T Consensus 346 ~~Vi~ 350 (410)
T 2j0s_A 346 SLIIN 350 (410)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 88876
No 213
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=63.82 E-value=17 Score=39.72 Aligned_cols=88 Identities=13% Similarity=0.086 Sum_probs=60.7
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHh----cCCCcEEEECHHHHHHHHHhccccCC
Q 008605 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL----QEGVDVLIATPGRFMFLIKEGILQLI 419 (560)
Q Consensus 344 ~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~ll~~~~~~l~ 419 (560)
.+..+||.|+++.-+.+++..++.. ++.+..++|+....++...+ ....+|||+|- .+ ...+++.
T Consensus 266 ~~~~~IVf~~sr~~~e~la~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~-----a~-~~GID~p 334 (591)
T 2v1x_A 266 KGQSGIIYCFSQKDSEQVTVSLQNL-----GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATV-----AF-GMGIDKP 334 (591)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECT-----TS-CTTCCCS
T ss_pred cCCCeEEEeCcHHHHHHHHHHHHHC-----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec-----hh-hcCCCcc
Confidence 4568999999999999999988764 46788999998765553333 24589999993 12 2356788
Q ss_pred CccEEEEccccccCCCCChHHHHHHHHh
Q 008605 420 NLRCAILDEVDILFNDEDFEVALQSLIS 447 (560)
Q Consensus 420 ~l~~LViDEah~ll~d~~f~~~l~~Il~ 447 (560)
++++||.=.. ..+....++++=+
T Consensus 335 ~V~~VI~~~~-----p~s~~~y~Qr~GR 357 (591)
T 2v1x_A 335 DVRFVIHHSM-----SKSMENYYQESGR 357 (591)
T ss_dssp CEEEEEESSC-----CSSHHHHHHHHTT
T ss_pred cccEEEEeCC-----CCCHHHHHHHhcc
Confidence 8988874322 2345555555533
No 214
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=63.63 E-value=7.4 Score=36.59 Aligned_cols=32 Identities=19% Similarity=0.067 Sum_probs=26.1
Q ss_pred ChHHHHHHHHHHHcCCcEEEEcCCCCcchhhc
Q 008605 291 PSQIQAMAFPPVVEGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 291 pt~iQ~~aip~il~g~dvlv~apTGSGKTla~ 322 (560)
-+.-|..++..+..|.-+.+.+|+|+|||..+
T Consensus 8 k~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 8 KTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CSHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred CCHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 34457778888888988999999999999754
No 215
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=63.36 E-value=6.2 Score=36.77 Aligned_cols=61 Identities=13% Similarity=0.141 Sum_probs=43.6
Q ss_pred ChHHHHHHHHHHHcCC--cEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHH
Q 008605 291 PSQIQAMAFPPVVEGK--SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVL 362 (560)
Q Consensus 291 pt~iQ~~aip~il~g~--dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~ 362 (560)
..+-|..++..++... -.+|.++-|++|+-..+--++..... .|.++.+|+|+..-.....
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~-----------~Gr~V~vLAp~~~s~~~l~ 97 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMARE-----------QGREVQIIAADRRSQMNMK 97 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHH-----------TTCCEEEECSTTHHHHHHS
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHh-----------cCeEEEEEcCchHHHHHHH
Confidence 4577999998887554 36678899999998865544443332 3678999999987655543
No 216
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=63.36 E-value=1.3e+02 Score=30.17 Aligned_cols=54 Identities=6% Similarity=0.049 Sum_probs=38.1
Q ss_pred CccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHh
Q 008605 420 NLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEV 473 (560)
Q Consensus 420 ~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~ 473 (560)
..+++++|.+-.+-.+..+...+..+.+.+.++..++++.++.-.++.+.+..+
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~ 264 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQF 264 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHH
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHH
Confidence 345788999877653456777777777666667788899998877766655443
No 217
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=63.08 E-value=6.6 Score=34.66 Aligned_cols=18 Identities=28% Similarity=0.386 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCCcchhhc
Q 008605 305 GKSCILADQSGSGKTLAY 322 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~ 322 (560)
..++++.+|+|+|||...
T Consensus 43 ~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SCEEEEECCTTSCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 367999999999999753
No 218
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=62.70 E-value=5.8 Score=40.72 Aligned_cols=21 Identities=29% Similarity=0.262 Sum_probs=16.7
Q ss_pred cCCcEEEEcCCCCcchhhcHH
Q 008605 304 EGKSCILADQSGSGKTLAYLL 324 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~ll 324 (560)
.|+-+++.+++|+|||...+-
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~ 82 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQ 82 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 356789999999999976543
No 219
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=61.96 E-value=12 Score=36.21 Aligned_cols=18 Identities=28% Similarity=0.366 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCCcchhhc
Q 008605 305 GKSCILADQSGSGKTLAY 322 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~ 322 (560)
..++++.+|+|+|||...
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 578999999999999753
No 220
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=61.83 E-value=4.7 Score=41.52 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=20.5
Q ss_pred HHHHHHHcCCc--EEEEcCCCCcchhhc
Q 008605 297 MAFPPVVEGKS--CILADQSGSGKTLAY 322 (560)
Q Consensus 297 ~aip~il~g~d--vlv~apTGSGKTla~ 322 (560)
..+..++.|.| ++..++||||||...
T Consensus 95 plv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 95 DVVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 35566788987 667889999999774
No 221
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=61.34 E-value=4.8 Score=38.70 Aligned_cols=19 Identities=26% Similarity=0.466 Sum_probs=16.3
Q ss_pred HcCCcEEEEcCCCCcchhh
Q 008605 303 VEGKSCILADQSGSGKTLA 321 (560)
Q Consensus 303 l~g~dvlv~apTGSGKTla 321 (560)
..+.++++.+++|+|||..
T Consensus 27 ~~~~~vll~G~~GtGKt~l 45 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELI 45 (265)
T ss_dssp TSCSCEEEECCTTSCHHHH
T ss_pred CCCCCEEEECCCCCcHHHH
Confidence 3567899999999999975
No 222
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=61.03 E-value=6 Score=39.82 Aligned_cols=43 Identities=19% Similarity=0.217 Sum_probs=27.7
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHHc----CCcEEEEcCCCCcchhhc
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVE----GKSCILADQSGSGKTLAY 322 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il~----g~dvlv~apTGSGKTla~ 322 (560)
.+|+++--.+...+.+.. .+..+.. ++.+++.+|+|+|||...
T Consensus 41 ~~~~~ivG~~~~~~~l~~------------l~~~~~~~~~~~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 41 QASQGMVGQLAARRAAGV------------VLEMIREGKIAGRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp SEETTEESCHHHHHHHHH------------HHHHHHTTCCTTCEEEEEESTTSSHHHHH
T ss_pred cchhhccChHHHHHHHHH------------HHHHHHcCCCCCCEEEEECCCCCCHHHHH
Confidence 457777666666555432 1222332 357999999999999764
No 223
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=60.92 E-value=4.1 Score=36.08 Aligned_cols=18 Identities=33% Similarity=0.381 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCCcchhhc
Q 008605 305 GKSCILADQSGSGKTLAY 322 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~ 322 (560)
..++++.+|+|+|||...
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 467999999999999753
No 224
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.82 E-value=2.2 Score=44.75 Aligned_cols=53 Identities=23% Similarity=0.404 Sum_probs=33.0
Q ss_pred ccccccccCCCHHHHHHHHHC---CCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhh
Q 008605 266 SRKSFKELGCSDYMIESLKRQ---NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLA 321 (560)
Q Consensus 266 ~~~sF~~l~L~~~ll~~L~~~---g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla 321 (560)
+..+|++.+=-++..+.|++. -+.+|--++... +.-.+.+|+.+|+|+|||+.
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~g---i~~prGvLL~GPPGTGKTll 198 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLG---IAQPKGVILYGPPGTGKTLL 198 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCCCEEEESCSSSSHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCceEEeCCCCCCHHHH
Confidence 446899998777777777652 011121111111 11236899999999999975
No 225
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=60.73 E-value=22 Score=38.08 Aligned_cols=87 Identities=10% Similarity=0.125 Sum_probs=59.7
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHh----cCCCcEEEECHHHHHHHHHhccccCCC
Q 008605 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL----QEGVDVLIATPGRFMFLIKEGILQLIN 420 (560)
Q Consensus 345 ~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~ll~~~~~~l~~ 420 (560)
+..+||.|+|+.-+.++++.++.. ++.+..++|+....+....+ ....+|||+|. .+ ...+++.+
T Consensus 236 ~~~~IVf~~sr~~~e~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~-----a~-~~GiD~p~ 304 (523)
T 1oyw_A 236 GKSGIIYCNSRAKVEDTAARLQSK-----GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATV-----AF-GMGINKPN 304 (523)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECT-----TS-CTTTCCTT
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHC-----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec-----hh-hCCCCccC
Confidence 457999999999999999988765 46788899998765543332 24589999994 12 23567888
Q ss_pred ccEEEEccccccCCCCChHHHHHHHHh
Q 008605 421 LRCAILDEVDILFNDEDFEVALQSLIS 447 (560)
Q Consensus 421 l~~LViDEah~ll~d~~f~~~l~~Il~ 447 (560)
++++|.=.. ..+....++++=+
T Consensus 305 v~~VI~~~~-----p~s~~~y~Qr~GR 326 (523)
T 1oyw_A 305 VRFVVHFDI-----PRNIESYYQETGR 326 (523)
T ss_dssp CCEEEESSC-----CSSHHHHHHHHTT
T ss_pred ccEEEEECC-----CCCHHHHHHHhcc
Confidence 988875332 2345555555533
No 226
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=60.66 E-value=42 Score=35.16 Aligned_cols=18 Identities=33% Similarity=0.344 Sum_probs=13.9
Q ss_pred CcEEEEcCCCCcchhhcH
Q 008605 306 KSCILADQSGSGKTLAYL 323 (560)
Q Consensus 306 ~dvlv~apTGSGKTla~l 323 (560)
+-+++++++|+|||....
T Consensus 99 ~vi~i~G~~GsGKTT~~~ 116 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAA 116 (425)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 346778999999997643
No 227
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=60.63 E-value=7.4 Score=36.48 Aligned_cols=53 Identities=21% Similarity=0.231 Sum_probs=30.0
Q ss_pred cCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhh
Q 008605 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l 368 (560)
.|.-+++.|++|+|||...+--+.+.+... +..++|+.-. +-..++...+..+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~-----------~~~v~~~s~E-~~~~~~~~~~~~~ 81 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEY-----------GEPGVFVTLE-ERARDLRREMASF 81 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHH-----------CCCEEEEESS-SCHHHHHHHHHTT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhc-----------CCCceeeccc-CCHHHHHHHHHHc
Confidence 356689999999999965433333333322 2236666532 3345555555443
No 228
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=60.42 E-value=8.9 Score=48.05 Aligned_cols=46 Identities=15% Similarity=0.173 Sum_probs=30.6
Q ss_pred cCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHH
Q 008605 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVL 362 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~ 362 (560)
.|+++++++++|+|||......+...+. .+-+++|+. ..++..+++
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k------------~Ge~~~Fit-~ee~~~~L~ 1125 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQR------------EGKTCAFID-AEHALDPIY 1125 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHT------------TTCCEEEEC-TTSCCCHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH------------cCCeEEEEE-ccccHHHHH
Confidence 4578999999999999875554444432 244677775 444555555
No 229
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=59.86 E-value=5.4 Score=40.44 Aligned_cols=25 Identities=32% Similarity=0.353 Sum_probs=19.7
Q ss_pred HHHHHHcCCc--EEEEcCCCCcchhhc
Q 008605 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (560)
Q Consensus 298 aip~il~g~d--vlv~apTGSGKTla~ 322 (560)
.+..++.|.| ++..++||||||...
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 4455678887 667889999999875
No 230
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=59.40 E-value=7.6 Score=39.48 Aligned_cols=45 Identities=20% Similarity=0.357 Sum_probs=29.7
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHH---------HHcCCcEEEEcCCCCcchhhc
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPP---------VVEGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~---------il~g~dvlv~apTGSGKTla~ 322 (560)
.+|+++.-.+.+++.|.+. -.+|. ....+.+++.+|+|+|||...
T Consensus 81 ~~~~~i~G~~~~~~~l~~~----------i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 81 VNWEDIAGVEFAKATIKEI----------VVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCGGGSCSCHHHHHHHHHH----------THHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHH
T ss_pred CCHHHhCChHHHHHHHHHH----------HHHHhhChHhHhhccCCCceEEEECCCCCCHHHHH
Confidence 5688877677777776542 01111 123467999999999999754
No 231
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=58.57 E-value=3.9 Score=40.78 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=20.1
Q ss_pred HHHHHHHcCCcEEEEcCCCCcchhhc
Q 008605 297 MAFPPVVEGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 297 ~aip~il~g~dvlv~apTGSGKTla~ 322 (560)
.+.-.+..+.++++.+|+|+|||...
T Consensus 38 ~l~~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 38 RLLIGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHHHHcCCeEEEECCCCCcHHHHH
Confidence 33444567889999999999999753
No 232
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=57.77 E-value=13 Score=38.68 Aligned_cols=67 Identities=9% Similarity=0.052 Sum_probs=45.7
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhc-CCCcEEEECHHHHHHHHHhccccCCCccE
Q 008605 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ-EGVDVLIATPGRFMFLIKEGILQLINLRC 423 (560)
Q Consensus 345 ~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~-~~~~IlV~TP~~L~~ll~~~~~~l~~l~~ 423 (560)
+.++||+||+++-+..+++.+++. ++++..++|+... .....+. ...+|||+|- .+.. .+++. +..
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~v~~lhg~~r~-~~~~~f~~g~~~vLVaT~-----v~e~-GiDip-~~~ 237 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA-----GKKVLYLNRKTFE-SEYPKCKSEKWDFVITTD-----ISEM-GANFK-ADR 237 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT-----TCCEEEESTTTHH-HHTTHHHHSCCSEEEECG-----GGGT-SCCCC-CSE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc-----CCeEEEeCCccHH-HHHHhhcCCCCeEEEECc-----hHHc-CcccC-CcE
Confidence 347999999999999999988875 4678888887432 2223332 4589999994 2333 45555 555
Q ss_pred E
Q 008605 424 A 424 (560)
Q Consensus 424 L 424 (560)
|
T Consensus 238 V 238 (431)
T 2v6i_A 238 V 238 (431)
T ss_dssp E
T ss_pred E
Confidence 4
No 233
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=57.23 E-value=6.3 Score=40.65 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=19.6
Q ss_pred HHHHHHcCCc--EEEEcCCCCcchhhc
Q 008605 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (560)
Q Consensus 298 aip~il~g~d--vlv~apTGSGKTla~ 322 (560)
.+..++.|.| ++..++||||||...
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 4556778987 567889999999764
No 234
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=57.20 E-value=6.4 Score=40.37 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=19.4
Q ss_pred HHHHHHcCCc--EEEEcCCCCcchhhc
Q 008605 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (560)
Q Consensus 298 aip~il~g~d--vlv~apTGSGKTla~ 322 (560)
.+..++.|.| ++..++||||||...
T Consensus 81 lv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 81 LIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 3455678887 667889999999874
No 235
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=57.20 E-value=5.8 Score=40.56 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=19.4
Q ss_pred HHHHHHcCCc--EEEEcCCCCcchhhc
Q 008605 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (560)
Q Consensus 298 aip~il~g~d--vlv~apTGSGKTla~ 322 (560)
.+..++.|.| ++..++||||||...
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 3455678887 567889999999874
No 236
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=57.15 E-value=6.1 Score=40.46 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=18.1
Q ss_pred HHHcCCcEEEEcCCCCcchhh
Q 008605 301 PVVEGKSCILADQSGSGKTLA 321 (560)
Q Consensus 301 ~il~g~dvlv~apTGSGKTla 321 (560)
.+..|..+++++|||||||..
T Consensus 171 ~i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHHH
T ss_pred HHhcCCEEEEECCCCCCHHHH
Confidence 356789999999999999974
No 237
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=57.09 E-value=6.4 Score=39.98 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=20.5
Q ss_pred HHHHHHHcCCc--EEEEcCCCCcchhhc
Q 008605 297 MAFPPVVEGKS--CILADQSGSGKTLAY 322 (560)
Q Consensus 297 ~aip~il~g~d--vlv~apTGSGKTla~ 322 (560)
..+..++.|.| ++..++||||||...
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 35566788987 567889999999775
No 238
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=57.08 E-value=6.4 Score=40.35 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=19.7
Q ss_pred HHHHHHcCCc--EEEEcCCCCcchhhc
Q 008605 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (560)
Q Consensus 298 aip~il~g~d--vlv~apTGSGKTla~ 322 (560)
.+..++.|.| ++..++||||||...
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEE
Confidence 4556778887 667889999999875
No 239
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=57.03 E-value=6.4 Score=40.50 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=20.2
Q ss_pred HHHHHHHcCCc--EEEEcCCCCcchhhc
Q 008605 297 MAFPPVVEGKS--CILADQSGSGKTLAY 322 (560)
Q Consensus 297 ~aip~il~g~d--vlv~apTGSGKTla~ 322 (560)
..+..++.|.| ++..++||||||...
T Consensus 94 ~lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 94 DVVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhCCCceEEEEECCCCCCCceEe
Confidence 34566788987 567889999999874
No 240
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=57.02 E-value=6.3 Score=40.45 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=20.0
Q ss_pred HHHHHHcCCc--EEEEcCCCCcchhhc
Q 008605 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (560)
Q Consensus 298 aip~il~g~d--vlv~apTGSGKTla~ 322 (560)
.+..++.|.| ++..++||||||...
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 4556778987 567889999999875
No 241
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=56.98 E-value=7.5 Score=39.54 Aligned_cols=49 Identities=18% Similarity=0.300 Sum_probs=29.1
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHH-----cCCcEEEEcCCCCcchhhc
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVV-----EGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il-----~g~dvlv~apTGSGKTla~ 322 (560)
.+|+++.-.+.+.+.|...=. .+ .-.|.+. ..+.+++.+|+|+|||+..
T Consensus 48 ~~~~di~G~~~~~~~l~~~v~---~~---~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEAVI---LP---VKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHHTH---HH---HHCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHH---HH---HhCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 568888766666666654200 00 0001111 2357999999999999754
No 242
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=56.90 E-value=35 Score=35.44 Aligned_cols=19 Identities=21% Similarity=0.160 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCCcchhhcH
Q 008605 305 GKSCILADQSGSGKTLAYL 323 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~l 323 (560)
|.-+.+.+|+|+|||....
T Consensus 178 Gei~~I~G~sGsGKTTLl~ 196 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCH 196 (400)
T ss_dssp TSEEEEEESTTSSHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHH
Confidence 3568899999999997544
No 243
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=56.81 E-value=6.4 Score=40.70 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=19.5
Q ss_pred HHHHHHcCCc--EEEEcCCCCcchhhc
Q 008605 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (560)
Q Consensus 298 aip~il~g~d--vlv~apTGSGKTla~ 322 (560)
.+..++.|.| ++..++||||||...
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 4455778887 567889999999874
No 244
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=56.79 E-value=6.1 Score=40.67 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=19.6
Q ss_pred HHHHHHcCCc--EEEEcCCCCcchhhc
Q 008605 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (560)
Q Consensus 298 aip~il~g~d--vlv~apTGSGKTla~ 322 (560)
.+..++.|.| ++..++||||||...
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 4556778987 567889999999764
No 245
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=56.72 E-value=6.5 Score=40.53 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=19.5
Q ss_pred HHHHHHcCCc--EEEEcCCCCcchhhc
Q 008605 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (560)
Q Consensus 298 aip~il~g~d--vlv~apTGSGKTla~ 322 (560)
.+..++.|.| ++..++||||||...
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceEEEeecCCCCCCceEE
Confidence 3455678887 567889999999874
No 246
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=56.50 E-value=14 Score=45.72 Aligned_cols=120 Identities=15% Similarity=0.219 Sum_probs=67.9
Q ss_pred CcEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcc
Q 008605 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385 (560)
Q Consensus 306 ~dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~ 385 (560)
+-+.+.+|.|||||...+ +++....+ .+..|+|+.+--+|-... +++++- ++.
T Consensus 1432 ~~iei~g~~~sGkttl~~-~~~a~~~~-----------~g~~~~~i~~e~~~~~~~---~~~~Gv---~~~--------- 1484 (1706)
T 3cmw_A 1432 RIVEIYGPESSGKTTLTL-QVIAAAQR-----------EGKTCAFIDAEHALDPIY---ARKLGV---DID--------- 1484 (1706)
T ss_dssp SEEEEECSTTSSHHHHHH-HHHHHHHH-----------TTCCEEEECTTSCCCHHH---HHHTTC---CGG---------
T ss_pred CEEEEEcCCCCCHHHHHH-HHHHHHHh-----------cCCeEEEEecCCCCCHHH---HHHcCC---CHH---------
Confidence 457899999999998644 44433322 255688888866664443 555532 221
Q ss_pred hHHHHHHhcCCCcEEEECH---HHHHHHHHhccccCCCccEEEEccccccCCCCC----------------hHHHHHHHH
Q 008605 386 QKTQLENLQEGVDVLIATP---GRFMFLIKEGILQLINLRCAILDEVDILFNDED----------------FEVALQSLI 446 (560)
Q Consensus 386 ~~~~~~~l~~~~~IlV~TP---~~L~~ll~~~~~~l~~l~~LViDEah~ll~d~~----------------f~~~l~~Il 446 (560)
+++|.-| +..+..+.. .+.-..+++||||.+..+..... +...++++.
T Consensus 1485 ------------~l~~~~p~~~e~~l~~~~~-~~~s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~ 1551 (1706)
T 3cmw_A 1485 ------------NLLCSQPDTGEQALEICDA-LARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLA 1551 (1706)
T ss_dssp ------------GCEEECCSSHHHHHHHHHH-HHHHTCCSEEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHHH
T ss_pred ------------HeEEeCCCcHHHHHHHHHH-HHHcCCCCEEEEccHHhCCccccccccccccchhHHHHHHHHHHHHHH
Confidence 2555555 333332222 11223578999999998874111 334455555
Q ss_pred hhCCCCCcEEEEeccCCHH
Q 008605 447 SSSPVTAQYLFVTATLPVE 465 (560)
Q Consensus 447 ~~~~~~~Q~IllSATlp~~ 465 (560)
..+....-+++|...+...
T Consensus 1552 ~~~~~~~~~~i~~~~~~~~ 1570 (1706)
T 3cmw_A 1552 GNLKQSNTLLIFINQIRMK 1570 (1706)
T ss_dssp HHHHHHTCEEEEEECBC--
T ss_pred HHHHhCCcEEEEeeccccc
Confidence 5555444566677766544
No 247
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=56.22 E-value=6.7 Score=41.11 Aligned_cols=25 Identities=36% Similarity=0.590 Sum_probs=19.5
Q ss_pred HHHHHHcCCc--EEEEcCCCCcchhhc
Q 008605 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (560)
Q Consensus 298 aip~il~g~d--vlv~apTGSGKTla~ 322 (560)
.+..++.|.| ++..++||||||...
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeEe
Confidence 4455778887 667889999999874
No 248
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=56.06 E-value=6.4 Score=40.45 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=19.0
Q ss_pred HHHHHcCCc--EEEEcCCCCcchhhc
Q 008605 299 FPPVVEGKS--CILADQSGSGKTLAY 322 (560)
Q Consensus 299 ip~il~g~d--vlv~apTGSGKTla~ 322 (560)
+..++.|.| ++..++||||||...
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCcceEEEECCCCCCcceEe
Confidence 445678887 667889999999874
No 249
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=55.89 E-value=6.2 Score=41.60 Aligned_cols=18 Identities=33% Similarity=0.390 Sum_probs=14.7
Q ss_pred CcEEEEcCCCCcchhhcH
Q 008605 306 KSCILADQSGSGKTLAYL 323 (560)
Q Consensus 306 ~dvlv~apTGSGKTla~l 323 (560)
..+++++++|+|||....
T Consensus 100 ~vI~ivG~~GvGKTTla~ 117 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAA 117 (432)
T ss_dssp CCEEEECCSSSSTTHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 368899999999997643
No 250
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=55.88 E-value=11 Score=38.61 Aligned_cols=45 Identities=20% Similarity=0.396 Sum_probs=29.7
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHH---------HcCCcEEEEcCCCCcchhhc
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPV---------VEGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~i---------l~g~dvlv~apTGSGKTla~ 322 (560)
.+|+++.-.+.+++.|...- .++.. ...+++|+.+|+|+|||...
T Consensus 112 ~~~~~iiG~~~~~~~l~~~~----------~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 112 VKFDDIAGQDLAKQALQEIV----------ILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CCGGGSCSCHHHHHHHHHHT----------HHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHH
T ss_pred CChHHhCCHHHHHHHHHHHH----------HHhccCHHHhcccCCCCceEEEECCCCCCHHHHH
Confidence 46888876777777665421 11111 12468999999999999754
No 251
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=55.71 E-value=7.2 Score=40.74 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=20.5
Q ss_pred HHHHHHcCCc--EEEEcCCCCcchhhc
Q 008605 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (560)
Q Consensus 298 aip~il~g~d--vlv~apTGSGKTla~ 322 (560)
.+..++.|.| ++..++||||||...
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 5667789988 567889999999875
No 252
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=55.70 E-value=7.3 Score=39.80 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=19.5
Q ss_pred HHHHHHcCCc--EEEEcCCCCcchhhc
Q 008605 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (560)
Q Consensus 298 aip~il~g~d--vlv~apTGSGKTla~ 322 (560)
.+..++.|.| ++..++||||||...
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEee
Confidence 4456778887 567889999999874
No 253
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=55.70 E-value=19 Score=38.28 Aligned_cols=20 Identities=15% Similarity=0.112 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCCcchhhcH
Q 008605 304 EGKSCILADQSGSGKTLAYL 323 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~l 323 (560)
.|.=+++.|++|+|||...+
T Consensus 241 ~G~l~li~G~pG~GKT~lal 260 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVR 260 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHH
Confidence 34568899999999997543
No 254
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=55.53 E-value=6.5 Score=40.36 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=19.7
Q ss_pred HHHHHHcCCc--EEEEcCCCCcchhhc
Q 008605 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (560)
Q Consensus 298 aip~il~g~d--vlv~apTGSGKTla~ 322 (560)
.+..++.|.| ++..++||||||...
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceeee
Confidence 4456778887 567889999999874
No 255
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=55.41 E-value=14 Score=38.73 Aligned_cols=68 Identities=13% Similarity=0.140 Sum_probs=45.8
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhc-CCCcEEEECHHHHHHHHHhccccCCCccE
Q 008605 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ-EGVDVLIATPGRFMFLIKEGILQLINLRC 423 (560)
Q Consensus 345 ~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~-~~~~IlV~TP~~L~~ll~~~~~~l~~l~~ 423 (560)
+.++||.||+++-+.++++.++.. ++++..++|.... .....+. ...+|||+|. .+ ...+++. +++
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~-----~~~v~~lhg~~R~-~~~~~F~~g~~~vLVaT~-----v~-e~GiDip-v~~ 243 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA-----GKSVVVLNRKTFE-REYPTIKQKKPDFILATD-----IA-EMGANLC-VER 243 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT-----TCCEEECCSSSCC---------CCCSEEEESS-----ST-TCCTTCC-CSE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc-----CCCEEEecchhHH-HHHhhhcCCCceEEEECC-----hh-heeeccC-ceE
Confidence 457999999999999999988875 4678888885433 2333343 3489999993 22 2356677 888
Q ss_pred EE
Q 008605 424 AI 425 (560)
Q Consensus 424 LV 425 (560)
||
T Consensus 244 VI 245 (440)
T 1yks_A 244 VL 245 (440)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 256
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=54.89 E-value=8.5 Score=40.56 Aligned_cols=44 Identities=23% Similarity=0.262 Sum_probs=29.2
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHH----cCCcEEEEcCCCCcchhhcH
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVV----EGKSCILADQSGSGKTLAYL 323 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il----~g~dvlv~apTGSGKTla~l 323 (560)
..|+++.-.+.+.+.+.. .+..+. .++++++.+|+|+|||....
T Consensus 34 ~~~~~iiG~~~~~~~l~~------------~~~~~~~~~~~~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 34 QAASGLVGQENAREACGV------------IVELIKSKKMAGRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp SEETTEESCHHHHHHHHH------------HHHHHHTTCCTTCEEEEECCTTSSHHHHHH
T ss_pred hchhhccCHHHHHHHHHH------------HHHHHHhCCCCCCeEEEECCCcCCHHHHHH
Confidence 457777767777666543 112222 23689999999999997643
No 257
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=54.77 E-value=6.6 Score=40.65 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=19.4
Q ss_pred HHHHHHcCCc--EEEEcCCCCcchhhc
Q 008605 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (560)
Q Consensus 298 aip~il~g~d--vlv~apTGSGKTla~ 322 (560)
.+..++.|.| ++..++||||||...
T Consensus 92 lv~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 92 LIEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEeecCCCCCcceec
Confidence 4455678887 667889999999764
No 258
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=59.79 E-value=2.6 Score=37.95 Aligned_cols=73 Identities=15% Similarity=0.199 Sum_probs=48.5
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHh---c-CCCcEEEECHHHHHHHHHhccccCCC
Q 008605 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLIN 420 (560)
Q Consensus 345 ~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l---~-~~~~IlV~TP~~L~~ll~~~~~~l~~ 420 (560)
+.++||.|+++.-+..+...++.. ++.+..++|+....+....+ . ...+|||+|. .+. ..+++..
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~-~Gid~~~ 98 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA-----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-----VAA-RGIDIPD 98 (170)
Confidence 346999999999999988888764 45677788876654433332 2 2478999992 222 2456667
Q ss_pred ccEEEEcc
Q 008605 421 LRCAILDE 428 (560)
Q Consensus 421 l~~LViDE 428 (560)
++++|.-+
T Consensus 99 ~~~Vi~~~ 106 (170)
T 2yjt_D 99 VSHVFNFD 106 (170)
Confidence 77776533
No 259
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=54.63 E-value=4.7 Score=36.55 Aligned_cols=18 Identities=22% Similarity=0.331 Sum_probs=15.3
Q ss_pred cCCcEEEEcCCCCcchhh
Q 008605 304 EGKSCILADQSGSGKTLA 321 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla 321 (560)
.|+-+++++|+|+|||..
T Consensus 4 ~g~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 466788999999999974
No 260
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=54.54 E-value=6.3 Score=40.74 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=20.0
Q ss_pred HHHHHHcCCc--EEEEcCCCCcchhhc
Q 008605 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (560)
Q Consensus 298 aip~il~g~d--vlv~apTGSGKTla~ 322 (560)
.+..++.|.| ++..++||||||...
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 5566788987 567889999999874
No 261
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=54.37 E-value=10 Score=38.95 Aligned_cols=21 Identities=14% Similarity=0.366 Sum_probs=17.3
Q ss_pred cCCcEEEEcCCCCcchhhcHH
Q 008605 304 EGKSCILADQSGSGKTLAYLL 324 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~ll 324 (560)
.+.+++|.++||+|||.....
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~ 54 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKM 54 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHH
Confidence 567899999999999976443
No 262
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=53.55 E-value=7.7 Score=41.08 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=20.2
Q ss_pred HHHHHHHcCCc--EEEEcCCCCcchhhc
Q 008605 297 MAFPPVVEGKS--CILADQSGSGKTLAY 322 (560)
Q Consensus 297 ~aip~il~g~d--vlv~apTGSGKTla~ 322 (560)
..+..++.|.| ++..++||||||...
T Consensus 127 plv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 127 EFLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred hHHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 34556678987 667889999999875
No 263
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=53.54 E-value=15 Score=34.89 Aligned_cols=45 Identities=13% Similarity=0.187 Sum_probs=29.8
Q ss_pred CHHHHHHHHHCCCCCChHHHHHHHHHHHcC----CcEEEEcCCCCcchhhc
Q 008605 276 SDYMIESLKRQNFLRPSQIQAMAFPPVVEG----KSCILADQSGSGKTLAY 322 (560)
Q Consensus 276 ~~~ll~~L~~~g~~~pt~iQ~~aip~il~g----~dvlv~apTGSGKTla~ 322 (560)
...|.+.|+-+|+ .+... ..++..++.+ +.+++.+|.|+|||..+
T Consensus 27 w~~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 27 WRPIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp SHHHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 4567777776654 34333 4455555555 25899999999999754
No 264
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=53.05 E-value=7.2 Score=40.89 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=20.8
Q ss_pred HHHHHHHcCCc--EEEEcCCCCcchhhc
Q 008605 297 MAFPPVVEGKS--CILADQSGSGKTLAY 322 (560)
Q Consensus 297 ~aip~il~g~d--vlv~apTGSGKTla~ 322 (560)
..+..++.|.| ++..++||||||...
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 35677889987 567889999999874
No 265
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=52.75 E-value=7.9 Score=40.23 Aligned_cols=26 Identities=35% Similarity=0.511 Sum_probs=20.2
Q ss_pred HHHHHHcCCc--EEEEcCCCCcchhhcH
Q 008605 298 AFPPVVEGKS--CILADQSGSGKTLAYL 323 (560)
Q Consensus 298 aip~il~g~d--vlv~apTGSGKTla~l 323 (560)
.+..++.|.| ++..++||||||....
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM~ 153 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTMG 153 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHHC
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEec
Confidence 4556778887 6678899999998754
No 266
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=52.51 E-value=6.5 Score=40.28 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=20.2
Q ss_pred HHHHHHcCCc--EEEEcCCCCcchhhc
Q 008605 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (560)
Q Consensus 298 aip~il~g~d--vlv~apTGSGKTla~ 322 (560)
.+..++.|.| ++..++||||||...
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 5666788987 567889999999875
No 267
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=52.29 E-value=3.1 Score=44.01 Aligned_cols=54 Identities=24% Similarity=0.359 Sum_probs=32.4
Q ss_pred ccccccccCCCHHHHHHHHHC---CCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhc
Q 008605 266 SRKSFKELGCSDYMIESLKRQ---NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 266 ~~~sF~~l~L~~~ll~~L~~~---g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~ 322 (560)
+..+|++.+--++..+.|.+. -+.+|.-++... +.-.+.+|+.+|+|+|||+..
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g---~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG---IKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTSSHHHHH
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeEEEECCCCCcHHHHH
Confidence 446899998777777776542 011111111110 112367999999999999763
No 268
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=51.88 E-value=5.9 Score=36.38 Aligned_cols=20 Identities=25% Similarity=0.125 Sum_probs=16.4
Q ss_pred HcCCcEEEEcCCCCcchhhc
Q 008605 303 VEGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 303 l~g~dvlv~apTGSGKTla~ 322 (560)
..++.+++++++|||||...
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLG 42 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHH
Confidence 35678999999999999764
No 269
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.83 E-value=5.9 Score=41.84 Aligned_cols=53 Identities=26% Similarity=0.451 Sum_probs=32.7
Q ss_pred ccccccccCCCHHHHHHHHHC---CCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhh
Q 008605 266 SRKSFKELGCSDYMIESLKRQ---NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLA 321 (560)
Q Consensus 266 ~~~sF~~l~L~~~ll~~L~~~---g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla 321 (560)
+..+|++++=-+++.+.|.+. -+.+|.-++...+ .-.+.+|+.+|+|+|||+.
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi---~~prGvLLyGPPGTGKTlL 232 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI---KPPKGVILYGAPGTGKTLL 232 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC---CCCSEEEEESSTTTTHHHH
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCCCceECCCCchHHHH
Confidence 446899998667666666542 1122222222111 1236799999999999975
No 270
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=51.78 E-value=6.8 Score=39.64 Aligned_cols=20 Identities=40% Similarity=0.596 Sum_probs=17.4
Q ss_pred HHcCCcEEEEcCCCCcchhh
Q 008605 302 VVEGKSCILADQSGSGKTLA 321 (560)
Q Consensus 302 il~g~dvlv~apTGSGKTla 321 (560)
+..|..+++++|||||||..
T Consensus 168 i~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHH
T ss_pred ccCCCEEEEECCCCCCHHHH
Confidence 45789999999999999974
No 271
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=51.55 E-value=5.4 Score=38.31 Aligned_cols=18 Identities=39% Similarity=0.560 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCCcchhhc
Q 008605 305 GKSCILADQSGSGKTLAY 322 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~ 322 (560)
.+.+++.+|+|+|||...
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 356999999999999754
No 272
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.46 E-value=3.6 Score=43.92 Aligned_cols=53 Identities=25% Similarity=0.456 Sum_probs=33.4
Q ss_pred ccccccccCCCHHHHHHHHHCC---CCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhh
Q 008605 266 SRKSFKELGCSDYMIESLKRQN---FLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLA 321 (560)
Q Consensus 266 ~~~sF~~l~L~~~ll~~L~~~g---~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla 321 (560)
+..+|++.+--+++.+.|++.= +.+|--++..- +.--+.+|+.+|+|+|||+.
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPGTGKTlL 259 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPGTGKTLC 259 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTTSSHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCCCcHHHH
Confidence 4568999998888888776520 11111111110 11246899999999999975
No 273
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=51.43 E-value=7.5 Score=38.65 Aligned_cols=19 Identities=26% Similarity=0.511 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCCcchhhc
Q 008605 304 EGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~ 322 (560)
.+.++++.+++|+|||...
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 4578999999999999753
No 274
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=51.30 E-value=22 Score=36.02 Aligned_cols=90 Identities=13% Similarity=0.092 Sum_probs=49.2
Q ss_pred cEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcch
Q 008605 307 SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386 (560)
Q Consensus 307 dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~ 386 (560)
-+++.+|+|+|||...+- ++...... ..+.+++|+..-..+... .++.++- +..
T Consensus 30 iteI~G~pGsGKTtL~Lq-~~~~~~~~---------g~g~~vlyId~E~s~~~~---ra~~lGv---d~d---------- 83 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLT-MVSSYMRQ---------YPDAVCLFYDSEFGITPA---YLRSMGV---DPE---------- 83 (333)
T ss_dssp EEEEEESSSSSHHHHHHH-HHHHHHHH---------CTTCEEEEEESSCCCCHH---HHHHTTC---CGG----------
T ss_pred eEEEECCCCCCHHHHHHH-HHHHHHhc---------CCCceEEEEeccchhhHH---HHHHhCC---CHH----------
Confidence 478999999999976443 33333221 124578888765554322 3444432 211
Q ss_pred HHHHHHhcCCCcEEEECH---HHH-HHHHHh-ccccCCCccEEEEccccccC
Q 008605 387 KTQLENLQEGVDVLIATP---GRF-MFLIKE-GILQLINLRCAILDEVDILF 433 (560)
Q Consensus 387 ~~~~~~l~~~~~IlV~TP---~~L-~~ll~~-~~~~l~~l~~LViDEah~ll 433 (560)
++++..| +.+ +.++.. ..+.-..+++||||=+..|.
T Consensus 84 -----------~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 84 -----------RVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp -----------GEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred -----------HeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 2333333 333 332221 11233468999999999886
No 275
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=51.12 E-value=19 Score=34.15 Aligned_cols=50 Identities=24% Similarity=0.300 Sum_probs=30.0
Q ss_pred cccccccCCCHHHHHHHHHCC--CCCChHHHHHHHHHHH--cCCcEEEEcCCCCcchhh
Q 008605 267 RKSFKELGCSDYMIESLKRQN--FLRPSQIQAMAFPPVV--EGKSCILADQSGSGKTLA 321 (560)
Q Consensus 267 ~~sF~~l~L~~~ll~~L~~~g--~~~pt~iQ~~aip~il--~g~dvlv~apTGSGKTla 321 (560)
..+|+++.-.+.....+...- |.. ..++..+. -.+.+++.+|+|+|||..
T Consensus 12 ~~~~~~i~g~~~~~~~l~~l~~~~~~-----~~~~~~~~~~~~~g~ll~G~~G~GKTtl 65 (254)
T 1ixz_A 12 KVTFKDVAGAEEAKEELKEIVEFLKN-----PSRFHEMGARIPKGVLLVGPPGVGKTHL 65 (254)
T ss_dssp SCCGGGCCSCHHHHHHHHHHHHHHHC-----HHHHHHTTCCCCSEEEEECCTTSSHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHHC-----HHHHHHcCCCCCCeEEEECCCCCCHHHH
Confidence 357888877777666665431 111 12222211 124599999999999965
No 276
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=50.78 E-value=7.4 Score=40.50 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=18.3
Q ss_pred HHHHcCCc--EEEEcCCCCcchhhc
Q 008605 300 PPVVEGKS--CILADQSGSGKTLAY 322 (560)
Q Consensus 300 p~il~g~d--vlv~apTGSGKTla~ 322 (560)
..++.|.| ++..++||||||...
T Consensus 92 ~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 92 RHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HHhhcCceeeEeeecCCCCCCCeEe
Confidence 44678887 567889999999875
No 277
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=50.26 E-value=6.7 Score=40.14 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=19.6
Q ss_pred HHHHHHcCCc--EEEEcCCCCcchhhc
Q 008605 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (560)
Q Consensus 298 aip~il~g~d--vlv~apTGSGKTla~ 322 (560)
.+..++.|.| ++..++||||||...
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 4555678887 567889999999875
No 278
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=50.22 E-value=2.3 Score=41.83 Aligned_cols=52 Identities=21% Similarity=0.335 Sum_probs=26.8
Q ss_pred cccccccCCCHHHHHHHHHCCCCCChHHH-HHHHHHHH--cCCcEEEEcCCCCcchhh
Q 008605 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQ-AMAFPPVV--EGKSCILADQSGSGKTLA 321 (560)
Q Consensus 267 ~~sF~~l~L~~~ll~~L~~~g~~~pt~iQ-~~aip~il--~g~dvlv~apTGSGKTla 321 (560)
..+|++++-.+++.+.|.+.= ..|+. ..++..+- -.+.+++.+|+|+|||..
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i---~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAI---LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLL 60 (274)
T ss_dssp ------CCHHHHHHHHHHHHH---THHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHH---HHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHH
Confidence 357999987777777775420 01111 12222211 124599999999999975
No 279
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=50.20 E-value=12 Score=39.22 Aligned_cols=18 Identities=22% Similarity=0.374 Sum_probs=14.7
Q ss_pred cCCcEEEEcCCCCcchhh
Q 008605 304 EGKSCILADQSGSGKTLA 321 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla 321 (560)
.|.-+++++|||||||..
T Consensus 166 ~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred cCCeEEEECCCCCCHHHH
Confidence 344588999999999975
No 280
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=49.94 E-value=52 Score=35.24 Aligned_cols=17 Identities=29% Similarity=0.374 Sum_probs=13.8
Q ss_pred cEEEEcCCCCcchhhcH
Q 008605 307 SCILADQSGSGKTLAYL 323 (560)
Q Consensus 307 dvlv~apTGSGKTla~l 323 (560)
.+++++++|+|||....
T Consensus 103 vI~ivG~~GvGKTTl~~ 119 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCS 119 (504)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47788999999997643
No 281
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=49.62 E-value=6.8 Score=38.21 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=17.0
Q ss_pred HHcCCcEEEEcCCCCcchhhc
Q 008605 302 VVEGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 302 il~g~dvlv~apTGSGKTla~ 322 (560)
+..|.-+++++|||||||...
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHH
Confidence 346677899999999999753
No 282
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=49.02 E-value=7.1 Score=35.05 Aligned_cols=18 Identities=28% Similarity=0.171 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCCcchhhc
Q 008605 305 GKSCILADQSGSGKTLAY 322 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~ 322 (560)
++.+++++++|||||...
T Consensus 5 ~~~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVG 22 (185)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 567899999999999754
No 283
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=48.98 E-value=46 Score=32.86 Aligned_cols=17 Identities=29% Similarity=0.323 Sum_probs=13.4
Q ss_pred cEEEEcCCCCcchhhcH
Q 008605 307 SCILADQSGSGKTLAYL 323 (560)
Q Consensus 307 dvlv~apTGSGKTla~l 323 (560)
-+++++++|+|||....
T Consensus 100 vi~i~G~~G~GKTT~~~ 116 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAG 116 (297)
T ss_dssp EEEEECSSCSSTTHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46678999999997543
No 284
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.34 E-value=4 Score=43.05 Aligned_cols=54 Identities=13% Similarity=0.341 Sum_probs=31.9
Q ss_pred ccccccccCCCHHHHHHHHHC---CCCCChHHHHHHHHHHHcCCcEEEEcCCCCcchhhc
Q 008605 266 SRKSFKELGCSDYMIESLKRQ---NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 266 ~~~sF~~l~L~~~ll~~L~~~---g~~~pt~iQ~~aip~il~g~dvlv~apTGSGKTla~ 322 (560)
+..+|++.+--+.+.+.|.+. -+.+|--++..- +.-.+.+|+.+|+|+|||+..
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g---~~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG---IDPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTTTHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCceEEEECCCCCCHHHHH
Confidence 346899998777777766542 011111111110 112357999999999999753
No 285
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=48.07 E-value=8 Score=35.67 Aligned_cols=19 Identities=26% Similarity=0.483 Sum_probs=14.9
Q ss_pred cCCcEEEEcCCCCcchhhc
Q 008605 304 EGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~ 322 (560)
.|+-+.+++|+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677899999999999753
No 286
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=47.81 E-value=41 Score=32.59 Aligned_cols=70 Identities=16% Similarity=0.206 Sum_probs=48.0
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHh---c-CCCcEEEECHHHHHHHHHhccccCC
Q 008605 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLI 419 (560)
Q Consensus 344 ~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l---~-~~~~IlV~TP~~L~~ll~~~~~~l~ 419 (560)
.+.++||.+++++-+..+++.++ .+..++|+....++...+ . ...+|+|+|. .+. ..+++.
T Consensus 219 ~~~~~lvf~~~~~~~~~l~~~l~---------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~-~Gid~~ 283 (337)
T 2z0m_A 219 KDKGVIVFVRTRNRVAKLVRLFD---------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTD-----VAS-RGLDIP 283 (337)
T ss_dssp CCSSEEEECSCHHHHHHHHTTCT---------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECH-----HHH-TTCCCC
T ss_pred CCCcEEEEEcCHHHHHHHHHHhh---------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcC-----ccc-cCCCcc
Confidence 45679999999998877665443 356677877665543333 2 3579999994 333 356788
Q ss_pred CccEEEEcc
Q 008605 420 NLRCAILDE 428 (560)
Q Consensus 420 ~l~~LViDE 428 (560)
.++++|.-.
T Consensus 284 ~~~~Vi~~~ 292 (337)
T 2z0m_A 284 LVEKVINFD 292 (337)
T ss_dssp CBSEEEESS
T ss_pred CCCEEEEec
Confidence 899888643
No 287
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=47.30 E-value=7.6 Score=40.19 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=19.7
Q ss_pred HHHHHHcCCc--EEEEcCCCCcchhhc
Q 008605 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (560)
Q Consensus 298 aip~il~g~d--vlv~apTGSGKTla~ 322 (560)
.+..++.|.| ++..++||||||...
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 4556778887 567889999999874
No 288
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=47.24 E-value=7.4 Score=34.61 Aligned_cols=18 Identities=28% Similarity=0.272 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCCcchhhc
Q 008605 305 GKSCILADQSGSGKTLAY 322 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~ 322 (560)
++-++++++.|||||...
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456889999999999753
No 289
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=46.82 E-value=8.1 Score=35.16 Aligned_cols=20 Identities=30% Similarity=0.371 Sum_probs=16.3
Q ss_pred HcCCcEEEEcCCCCcchhhc
Q 008605 303 VEGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 303 l~g~dvlv~apTGSGKTla~ 322 (560)
..|.-+++++|+|||||...
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35777889999999999753
No 290
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=46.40 E-value=10 Score=35.20 Aligned_cols=18 Identities=33% Similarity=0.466 Sum_probs=15.0
Q ss_pred cCCcEEEEcCCCCcchhh
Q 008605 304 EGKSCILADQSGSGKTLA 321 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla 321 (560)
.|+-+++++|+|+|||..
T Consensus 7 ~g~~i~l~GpsGsGKsTl 24 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTV 24 (208)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 456688999999999975
No 291
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=46.27 E-value=24 Score=39.30 Aligned_cols=68 Identities=10% Similarity=0.082 Sum_probs=47.7
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhc-CCCcEEEECHHHHHHHHHhccccCCCccE
Q 008605 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ-EGVDVLIATPGRFMFLIKEGILQLINLRC 423 (560)
Q Consensus 345 ~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~-~~~~IlV~TP~~L~~ll~~~~~~l~~l~~ 423 (560)
+.++||.||+++-+.+++..++.. ++++..++|.. .......+. ...+|||+|- .+. ..+++. +++
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~-----g~~v~~lHg~e-R~~v~~~F~~g~~~VLVaTd-----v~e-~GIDip-v~~ 476 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA-----GKRVIQLNRKS-YDTEYPKCKNGDWDFVITTD-----ISE-MGANFG-ASR 476 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT-----TCCEEEECSSS-HHHHGGGGGTCCCSEEEECG-----GGG-TTCCCC-CSE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC-----CCeEEEeChHH-HHHHHHHHHCCCceEEEECc-----hhh-cceeeC-CcE
Confidence 567999999999999999888765 46788888853 222333443 3479999993 222 355677 777
Q ss_pred EE
Q 008605 424 AI 425 (560)
Q Consensus 424 LV 425 (560)
||
T Consensus 477 VI 478 (673)
T 2wv9_A 477 VI 478 (673)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 292
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=46.06 E-value=38 Score=38.30 Aligned_cols=76 Identities=11% Similarity=0.153 Sum_probs=54.8
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHhhh------cCCCCceEEEEeCCcchHHHHHHhcC---------CCcEEEECHHHHHH
Q 008605 345 SPRVVILAPTAELASQVLSNCRSLS------KCGVPFRSMVVTGGFRQKTQLENLQE---------GVDVLIATPGRFMF 409 (560)
Q Consensus 345 ~~~aLil~PtreLa~Qi~~~l~~l~------~~~~~i~v~~l~gg~~~~~~~~~l~~---------~~~IlV~TP~~L~~ 409 (560)
...+||.+|++.-+.++++.+.+.. ....++.+..++|+....++...+.. ...|||+|.
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~----- 377 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN----- 377 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT-----
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc-----
Confidence 5689999999999999998887522 11246889999999987776555432 357999994
Q ss_pred HHHhccccCCCccEEEE
Q 008605 410 LIKEGILQLINLRCAIL 426 (560)
Q Consensus 410 ll~~~~~~l~~l~~LVi 426 (560)
.+. ..+++..+.+||-
T Consensus 378 iae-~GidIp~v~~VId 393 (773)
T 2xau_A 378 IAE-TSLTIDGIVYVVD 393 (773)
T ss_dssp HHH-HTCCCTTEEEEEE
T ss_pred HHH-hCcCcCCeEEEEe
Confidence 223 3567788876663
No 293
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=45.93 E-value=8.4 Score=39.29 Aligned_cols=17 Identities=29% Similarity=0.423 Sum_probs=14.2
Q ss_pred CcEEEEcCCCCcchhhc
Q 008605 306 KSCILADQSGSGKTLAY 322 (560)
Q Consensus 306 ~dvlv~apTGSGKTla~ 322 (560)
+-++|++|||+|||...
T Consensus 41 ~lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLS 57 (339)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45889999999999754
No 294
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=45.62 E-value=8 Score=33.74 Aligned_cols=16 Identities=25% Similarity=0.343 Sum_probs=13.3
Q ss_pred cEEEEcCCCCcchhhc
Q 008605 307 SCILADQSGSGKTLAY 322 (560)
Q Consensus 307 dvlv~apTGSGKTla~ 322 (560)
-+++++++|||||...
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999753
No 295
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=45.57 E-value=9.5 Score=34.12 Aligned_cols=20 Identities=25% Similarity=0.217 Sum_probs=16.6
Q ss_pred HcCCcEEEEcCCCCcchhhc
Q 008605 303 VEGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 303 l~g~dvlv~apTGSGKTla~ 322 (560)
..++.+++++++|||||...
T Consensus 9 ~~~~~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLG 28 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHH
Confidence 35678999999999999753
No 296
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=45.38 E-value=7.9 Score=39.20 Aligned_cols=16 Identities=19% Similarity=0.206 Sum_probs=13.2
Q ss_pred cEEEEcCCCCcchhhc
Q 008605 307 SCILADQSGSGKTLAY 322 (560)
Q Consensus 307 dvlv~apTGSGKTla~ 322 (560)
-++|.+|||+|||...
T Consensus 5 ~i~i~GptgsGKt~la 20 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCcCCHHHHH
Confidence 4678999999999653
No 297
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=45.22 E-value=9.7 Score=37.19 Aligned_cols=17 Identities=29% Similarity=0.335 Sum_probs=14.6
Q ss_pred CcEEEEcCCCCcchhhc
Q 008605 306 KSCILADQSGSGKTLAY 322 (560)
Q Consensus 306 ~dvlv~apTGSGKTla~ 322 (560)
..+++.+|+|+|||...
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 36999999999999764
No 298
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=45.11 E-value=8 Score=39.05 Aligned_cols=15 Identities=33% Similarity=0.335 Sum_probs=12.8
Q ss_pred EEEEcCCCCcchhhc
Q 008605 308 CILADQSGSGKTLAY 322 (560)
Q Consensus 308 vlv~apTGSGKTla~ 322 (560)
++|++|||||||...
T Consensus 13 i~i~GptgsGKt~la 27 (316)
T 3foz_A 13 IFLMGPTASGKTALA 27 (316)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCccCHHHHH
Confidence 678999999999653
No 299
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=45.04 E-value=7.3 Score=35.09 Aligned_cols=19 Identities=32% Similarity=0.574 Sum_probs=15.8
Q ss_pred HcCCcEEEEcCCCCcchhh
Q 008605 303 VEGKSCILADQSGSGKTLA 321 (560)
Q Consensus 303 l~g~dvlv~apTGSGKTla 321 (560)
..|.-+++++++|||||..
T Consensus 7 ~~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp CTTEEEEEEECTTSCHHHH
T ss_pred CCCeEEEEECCCCCCHHHH
Confidence 3566788999999999974
No 300
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=44.81 E-value=9.1 Score=34.62 Aligned_cols=19 Identities=26% Similarity=0.485 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCCcchhhc
Q 008605 304 EGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~ 322 (560)
.+..++++++.|||||.+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4567999999999999753
No 301
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=44.65 E-value=9.5 Score=35.10 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=16.6
Q ss_pred HHcCCcEEEEcCCCCcchhh
Q 008605 302 VVEGKSCILADQSGSGKTLA 321 (560)
Q Consensus 302 il~g~dvlv~apTGSGKTla 321 (560)
+..|+-+++++|+|||||..
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl 28 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTL 28 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHH
T ss_pred cccCCEEEEECCCCCCHHHH
Confidence 34677899999999999974
No 302
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=44.58 E-value=9.4 Score=33.71 Aligned_cols=17 Identities=24% Similarity=0.431 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCCcchhh
Q 008605 305 GKSCILADQSGSGKTLA 321 (560)
Q Consensus 305 g~dvlv~apTGSGKTla 321 (560)
+..+++.++.|||||..
T Consensus 4 ~~~i~l~G~~GsGKSTl 20 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTI 20 (173)
T ss_dssp CCCEEEECCTTSCHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 56789999999999975
No 303
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=44.51 E-value=27 Score=35.30 Aligned_cols=18 Identities=39% Similarity=0.527 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCCcchhhc
Q 008605 305 GKSCILADQSGSGKTLAY 322 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~ 322 (560)
..++++.+|+|+|||...
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 458999999999999754
No 304
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=44.23 E-value=19 Score=42.76 Aligned_cols=62 Identities=13% Similarity=0.114 Sum_probs=40.0
Q ss_pred cEEEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhh
Q 008605 307 SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (560)
Q Consensus 307 dvlv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l 368 (560)
..+|.|.-|||||.+..--++..+..............-.++|+|+=|++-|.++.+++++.
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~ 79 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHH
Confidence 45999999999998866666665542100000000112336999999999888888777653
No 305
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=44.12 E-value=84 Score=32.83 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=13.7
Q ss_pred cEEEEcCCCCcchhhcH
Q 008605 307 SCILADQSGSGKTLAYL 323 (560)
Q Consensus 307 dvlv~apTGSGKTla~l 323 (560)
.++++++.|+|||....
T Consensus 102 vI~ivG~~GvGKTT~a~ 118 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVG 118 (433)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 56778999999997643
No 306
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=43.83 E-value=15 Score=36.42 Aligned_cols=19 Identities=21% Similarity=0.291 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCCcchhhc
Q 008605 304 EGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~ 322 (560)
...++++.+|+|+|||...
T Consensus 44 ~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GGCCEEEECCGGGCTTHHH
T ss_pred CCceEEEECCCCccHHHHH
Confidence 3457999999999999753
No 307
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=43.72 E-value=8.4 Score=37.15 Aligned_cols=16 Identities=25% Similarity=0.148 Sum_probs=13.2
Q ss_pred cEEEEcCCCCcchhhc
Q 008605 307 SCILADQSGSGKTLAY 322 (560)
Q Consensus 307 dvlv~apTGSGKTla~ 322 (560)
-+++++|+|||||...
T Consensus 3 li~I~G~~GSGKSTla 18 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 3678999999999754
No 308
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=43.53 E-value=11 Score=34.35 Aligned_cols=18 Identities=33% Similarity=0.481 Sum_probs=15.3
Q ss_pred cCCcEEEEcCCCCcchhh
Q 008605 304 EGKSCILADQSGSGKTLA 321 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla 321 (560)
.|.-+.+.+|+|||||..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl 23 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSL 23 (205)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 566788999999999975
No 309
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=43.21 E-value=9.7 Score=34.01 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCCcchhhc
Q 008605 305 GKSCILADQSGSGKTLAY 322 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~ 322 (560)
+.-+++.++.|||||...
T Consensus 3 ~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 567899999999999753
No 310
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=42.93 E-value=10 Score=38.90 Aligned_cols=19 Identities=26% Similarity=0.434 Sum_probs=15.4
Q ss_pred HcCCcEEEEcCCCCcchhh
Q 008605 303 VEGKSCILADQSGSGKTLA 321 (560)
Q Consensus 303 l~g~dvlv~apTGSGKTla 321 (560)
..+..+++++|||||||..
T Consensus 121 ~~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp CSSEEEEEECSTTSCHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3455788999999999975
No 311
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=42.82 E-value=9.8 Score=35.20 Aligned_cols=16 Identities=25% Similarity=0.584 Sum_probs=13.8
Q ss_pred CcEEEEcCCCCcchhh
Q 008605 306 KSCILADQSGSGKTLA 321 (560)
Q Consensus 306 ~dvlv~apTGSGKTla 321 (560)
|-++++||+|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5689999999999963
No 312
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=42.76 E-value=11 Score=34.26 Aligned_cols=16 Identities=25% Similarity=0.584 Sum_probs=13.4
Q ss_pred CcEEEEcCCCCcchhh
Q 008605 306 KSCILADQSGSGKTLA 321 (560)
Q Consensus 306 ~dvlv~apTGSGKTla 321 (560)
+-+.+.+|+|+|||..
T Consensus 2 ~ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEESSSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4577899999999974
No 313
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=42.71 E-value=10 Score=39.05 Aligned_cols=20 Identities=20% Similarity=0.280 Sum_probs=16.4
Q ss_pred HcCCcEEEEcCCCCcchhhc
Q 008605 303 VEGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 303 l~g~dvlv~apTGSGKTla~ 322 (560)
..|..+++++|||||||...
T Consensus 134 ~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 45677899999999999753
No 314
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=42.59 E-value=62 Score=34.70 Aligned_cols=52 Identities=15% Similarity=0.139 Sum_probs=28.2
Q ss_pred CccEEEEccccccCCCCChHHHHHHHHh---hC-C--CCCcEEEEeccCCHHHHHHHH
Q 008605 420 NLRCAILDEVDILFNDEDFEVALQSLIS---SS-P--VTAQYLFVTATLPVEIYNKLV 471 (560)
Q Consensus 420 ~l~~LViDEah~ll~d~~f~~~l~~Il~---~~-~--~~~Q~IllSATlp~~v~~~l~ 471 (560)
.+++++||=+-++..+..+...+..+.. .+ + +..-++.+.||.-......+.
T Consensus 375 ~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~ak 432 (503)
T 2yhs_A 375 NIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAK 432 (503)
T ss_dssp TCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHHHH
T ss_pred CCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHHHH
Confidence 4568888888665422233344444432 22 1 223367888988755554443
No 315
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=42.55 E-value=8.8 Score=37.84 Aligned_cols=16 Identities=19% Similarity=0.177 Sum_probs=13.9
Q ss_pred CcEEEEcCCCCcchhh
Q 008605 306 KSCILADQSGSGKTLA 321 (560)
Q Consensus 306 ~dvlv~apTGSGKTla 321 (560)
+.+++.+|+|+|||..
T Consensus 37 ~~lLl~GppGtGKT~l 52 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQ 52 (293)
T ss_dssp SEEEEEECTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4688999999999975
No 316
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=42.25 E-value=63 Score=33.77 Aligned_cols=75 Identities=19% Similarity=0.293 Sum_probs=45.4
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeC--------CcchHHH---HHHhcC--CCcEEEECHHHHHHHH
Q 008605 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG--------GFRQKTQ---LENLQE--GVDVLIATPGRFMFLI 411 (560)
Q Consensus 345 ~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~g--------g~~~~~~---~~~l~~--~~~IlV~TP~~L~~ll 411 (560)
..++||.++++.-+..+.+.++..... ..+++..++| +.+..++ ...+.. ..+|||+|- .+
T Consensus 389 ~~k~lVF~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~-----~~ 462 (555)
T 3tbk_A 389 ETKTILFVKTRALVDALKKWIEENPAL-SFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATS-----VA 462 (555)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHCGGG-TTCCEEECCC--------------------------CCSEEEECC-----CT
T ss_pred CceEEEEeCcHHHHHHHHHHHhhCcCc-CceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcc-----hh
Confidence 468999999999999999999876432 2345555554 4333333 223333 478999993 12
Q ss_pred HhccccCCCccEEEE
Q 008605 412 KEGILQLINLRCAIL 426 (560)
Q Consensus 412 ~~~~~~l~~l~~LVi 426 (560)
...+++..+++||.
T Consensus 463 -~~GlDlp~v~~VI~ 476 (555)
T 3tbk_A 463 -DEGIDIAECNLVIL 476 (555)
T ss_dssp -TCCEETTSCSEEEE
T ss_pred -hcCCccccCCEEEE
Confidence 34567888888876
No 317
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=42.23 E-value=14 Score=38.01 Aligned_cols=19 Identities=42% Similarity=0.677 Sum_probs=15.8
Q ss_pred cCCc--EEEEcCCCCcchhhc
Q 008605 304 EGKS--CILADQSGSGKTLAY 322 (560)
Q Consensus 304 ~g~d--vlv~apTGSGKTla~ 322 (560)
.|.+ ++..++||||||...
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 4777 578999999999764
No 318
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=42.20 E-value=11 Score=35.60 Aligned_cols=17 Identities=29% Similarity=0.569 Sum_probs=14.3
Q ss_pred CCcEEEEcCCCCcchhh
Q 008605 305 GKSCILADQSGSGKTLA 321 (560)
Q Consensus 305 g~dvlv~apTGSGKTla 321 (560)
|+-+++.+|||+|||..
T Consensus 34 g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSET 50 (205)
T ss_dssp TEEEEEECCCTTTTHHH
T ss_pred CEEEEEECCCCCCHHHH
Confidence 45689999999999854
No 319
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=41.89 E-value=14 Score=34.63 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=16.0
Q ss_pred HHcCCcEEEEcCCCCcchhh
Q 008605 302 VVEGKSCILADQSGSGKTLA 321 (560)
Q Consensus 302 il~g~dvlv~apTGSGKTla 321 (560)
+..|+-+.+++|+|+|||..
T Consensus 20 i~~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp --CCCCEEEECSTTSSHHHH
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 34678899999999999974
No 320
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=41.75 E-value=26 Score=38.54 Aligned_cols=34 Identities=18% Similarity=0.228 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhCCCCcEEEEeCchHHHHHHHHHHH
Q 008605 516 KKSALLQLIEKSPVSKTIVFCNKVCFSYKCNNLFG 550 (560)
Q Consensus 516 K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~~Lk 550 (560)
....|.++++..+ +.++||++|....+.+++.|+
T Consensus 436 ~~~~i~~l~~~~~-g~~lvlF~Sy~~l~~v~~~l~ 469 (620)
T 4a15_A 436 MATVIEDIILKVK-KNTIVYFPSYSLMDRVENRVS 469 (620)
T ss_dssp HHHHHHHHHHHHC-SCEEEEESCHHHHHHHTSSCC
T ss_pred HHHHHHHHHHhCC-CCEEEEeCCHHHHHHHHHHHH
Confidence 3455566665543 579999999999999988775
No 321
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=41.41 E-value=20 Score=39.25 Aligned_cols=22 Identities=18% Similarity=0.403 Sum_probs=18.7
Q ss_pred HHHcCCcEEEEcCCCCcchhhc
Q 008605 301 PVVEGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 301 ~il~g~dvlv~apTGSGKTla~ 322 (560)
.+..|..+++.+|+|+|||..+
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHHH
T ss_pred cccCCCEEEEEeCCCCCHHHHH
Confidence 4567889999999999999754
No 322
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=41.33 E-value=20 Score=47.02 Aligned_cols=48 Identities=17% Similarity=0.209 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHCCCCCChHHH-HHHHH---HHHcCCcEEEEcCCCCcchhhcH
Q 008605 275 CSDYMIESLKRQNFLRPSQIQ-AMAFP---PVVEGKSCILADQSGSGKTLAYL 323 (560)
Q Consensus 275 L~~~ll~~L~~~g~~~pt~iQ-~~aip---~il~g~dvlv~apTGSGKTla~l 323 (560)
|.+.+.+.+.+.|+. |++.| .+++. .+...+.+++++|||||||.++-
T Consensus 873 l~~ai~~~~~~~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp HHHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHHHcCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 345666677788885 44443 34432 23345569999999999999875
No 323
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=41.30 E-value=25 Score=35.11 Aligned_cols=17 Identities=35% Similarity=0.431 Sum_probs=14.8
Q ss_pred CcEEEEcCCCCcchhhc
Q 008605 306 KSCILADQSGSGKTLAY 322 (560)
Q Consensus 306 ~dvlv~apTGSGKTla~ 322 (560)
..+++.+|+|+|||...
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 57999999999999753
No 324
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=41.10 E-value=13 Score=34.84 Aligned_cols=18 Identities=28% Similarity=0.436 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCCcchhh
Q 008605 304 EGKSCILADQSGSGKTLA 321 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla 321 (560)
.|+-+++++|+|+|||..
T Consensus 18 ~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp SCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECcCCCCHHHH
Confidence 567789999999999974
No 325
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=40.64 E-value=11 Score=34.69 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=16.5
Q ss_pred HHHcCCcEEEEcCCCCcchhhc
Q 008605 301 PVVEGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 301 ~il~g~dvlv~apTGSGKTla~ 322 (560)
.+..|.-+.+.+|+|+|||..+
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 4667888899999999999753
No 326
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=40.43 E-value=1.2e+02 Score=32.35 Aligned_cols=32 Identities=9% Similarity=0.070 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHhCCCCcEEEEeCchHHHHHHHH
Q 008605 515 NKKSALLQLIEKSPVSKTIVFCNKVCFSYKCNN 547 (560)
Q Consensus 515 ~K~~~L~~lL~~~~~~ktIIFcnS~~~a~~la~ 547 (560)
.-...|.++++..+ +.+|||++|....+.+++
T Consensus 380 ~l~~~i~~l~~~~~-g~~lvlF~Sy~~l~~v~~ 411 (551)
T 3crv_A 380 RYADYLLKIYFQAK-ANVLVVFPSYEIMDRVMS 411 (551)
T ss_dssp HHHHHHHHHHHHCS-SEEEEEESCHHHHHHHHT
T ss_pred HHHHHHHHHHHhCC-CCEEEEecCHHHHHHHHH
Confidence 34455556665544 689999999999988886
No 327
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=40.35 E-value=11 Score=34.40 Aligned_cols=19 Identities=32% Similarity=0.399 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCCcchhhc
Q 008605 304 EGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~ 322 (560)
.|.-++++++.|||||...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4677899999999999753
No 328
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=40.15 E-value=11 Score=33.38 Aligned_cols=16 Identities=25% Similarity=0.187 Sum_probs=13.3
Q ss_pred cEEEEcCCCCcchhhc
Q 008605 307 SCILADQSGSGKTLAY 322 (560)
Q Consensus 307 dvlv~apTGSGKTla~ 322 (560)
-++++++.|||||...
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 4788999999999753
No 329
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=40.07 E-value=9.8 Score=34.10 Aligned_cols=20 Identities=35% Similarity=0.305 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCCcchhhcH
Q 008605 304 EGKSCILADQSGSGKTLAYL 323 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~l 323 (560)
.|.-+.+++|+|||||..+-
T Consensus 8 ~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 35557899999999997654
No 330
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=40.06 E-value=12 Score=35.49 Aligned_cols=21 Identities=29% Similarity=0.495 Sum_probs=16.3
Q ss_pred HHcCCcEEEEcCCCCcchhhc
Q 008605 302 VVEGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 302 il~g~dvlv~apTGSGKTla~ 322 (560)
...|+-+++++|+|+|||..+
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHH
Confidence 456778899999999999753
No 331
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=39.79 E-value=11 Score=32.89 Aligned_cols=16 Identities=19% Similarity=-0.010 Sum_probs=13.4
Q ss_pred cEEEEcCCCCcchhhc
Q 008605 307 SCILADQSGSGKTLAY 322 (560)
Q Consensus 307 dvlv~apTGSGKTla~ 322 (560)
-+++.++.|||||...
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999753
No 332
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=39.49 E-value=38 Score=35.37 Aligned_cols=67 Identities=13% Similarity=0.125 Sum_probs=46.6
Q ss_pred CEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhc-CCCcEEEECHHHHHHHHHhccccCCCccEE
Q 008605 346 PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ-EGVDVLIATPGRFMFLIKEGILQLINLRCA 424 (560)
Q Consensus 346 ~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~-~~~~IlV~TP~~L~~ll~~~~~~l~~l~~L 424 (560)
.++||.+|++.-+.++++.+++. ++.+..++|.... .....+. ...+|||+|- .+ ...+++.. ++|
T Consensus 189 ~~~lVF~~s~~~a~~l~~~L~~~-----g~~~~~lh~~~~~-~~~~~f~~g~~~vLVaT~-----v~-~~GiDip~-~~V 255 (451)
T 2jlq_A 189 GKTVWFVPSIKAGNDIANCLRKS-----GKRVIQLSRKTFD-TEYPKTKLTDWDFVVTTD-----IS-EMGANFRA-GRV 255 (451)
T ss_dssp SCEEEECSSHHHHHHHHHHHHTT-----TCCEEEECTTTHH-HHGGGGGSSCCSEEEECG-----GG-GSSCCCCC-SEE
T ss_pred CCEEEEcCCHHHHHHHHHHHHHc-----CCeEEECCHHHHH-HHHHhhccCCceEEEECC-----HH-HhCcCCCC-CEE
Confidence 46999999999999999988764 4677788876553 2333333 3589999994 22 33556777 655
Q ss_pred E
Q 008605 425 I 425 (560)
Q Consensus 425 V 425 (560)
|
T Consensus 256 I 256 (451)
T 2jlq_A 256 I 256 (451)
T ss_dssp E
T ss_pred E
Confidence 5
No 333
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=39.34 E-value=10 Score=33.65 Aligned_cols=18 Identities=33% Similarity=0.388 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCCcchhhc
Q 008605 305 GKSCILADQSGSGKTLAY 322 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~ 322 (560)
|..++++++.|||||...
T Consensus 8 g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 556889999999999753
No 334
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=38.44 E-value=9.1 Score=41.00 Aligned_cols=53 Identities=19% Similarity=0.336 Sum_probs=29.7
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHH--HcCCcEEEEcCCCCcchhhc
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPV--VEGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~i--l~g~dvlv~apTGSGKTla~ 322 (560)
.+|+++.-.+..++.|.++= ..|.. ..+.+..+ ...+.+++.+|+|+|||+..
T Consensus 201 ~~~~~i~G~~~~~~~l~~~i-~~~l~-~~~~~~~~g~~~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 201 VGYDDIGGCRKQLAQIKEMV-ELPLR-HPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCGGGCCSCHHHHHHHHHHT-HHHHH-CHHHHHHHTCCCCCEEEEECSTTSSHHHHH
T ss_pred CCHHHcCCHHHHHHHHHHHH-HHHhh-CHHHHHhcCCCCCCcEEEECcCCCCHHHHH
Confidence 46777766666666665420 00000 01111121 23467999999999999754
No 335
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=37.99 E-value=18 Score=39.05 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=17.3
Q ss_pred cCCcEEEEcCCCCcchhhcHH
Q 008605 304 EGKSCILADQSGSGKTLAYLL 324 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~ll 324 (560)
.+.+++|.+.||||||.+...
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~ 186 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNA 186 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHH
Confidence 467999999999999976443
No 336
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=37.85 E-value=21 Score=42.30 Aligned_cols=39 Identities=28% Similarity=0.426 Sum_probs=26.5
Q ss_pred EEEcCCCCcchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcCCHH
Q 008605 309 ILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAE 356 (560)
Q Consensus 309 lv~apTGSGKTla~llpil~~l~~~~~~~~~~~~~~~~~aLil~Ptre 356 (560)
+|.|..|||||.+.+--+...+... ..+.++|+|+|...
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll~~~---------~~~~~il~lVP~q~ 43 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDELRRA---------PFGKPIIFLVPDQM 43 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHHC---------TTSSCEEEECCGGG
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhC---------CCCCcEEEEecCcc
Confidence 6889999999987555454444331 23457889988763
No 337
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=37.74 E-value=52 Score=38.19 Aligned_cols=89 Identities=15% Similarity=0.080 Sum_probs=62.0
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHH---HHHhcCC---CcEEEECHHHHHHHHHhcccc
Q 008605 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ---LENLQEG---VDVLIATPGRFMFLIKEGILQ 417 (560)
Q Consensus 344 ~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~---~~~l~~~---~~IlV~TP~~L~~ll~~~~~~ 417 (560)
.+.++||.|+++.-+..+...+... .++.+..++|+.+.... ...+..+ ++|||+| ..+ ...++
T Consensus 502 ~~~k~iVF~~~~~~~~~l~~~L~~~----~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT-~v~-----~~GlD 571 (968)
T 3dmq_A 502 RSQKVLVICAKAATALQLEQVLRER----EGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCS-EIG-----SEGRN 571 (968)
T ss_dssp SSSCCCEECSSTHHHHHHHHHHHTT----TCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECS-CCT-----TCSSC
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEec-chh-----hcCCC
Confidence 3567999999999999988888753 25688999999776443 3334444 8999999 222 34678
Q ss_pred CCCccEEEEccccccCCCCChHHHHHHHHh
Q 008605 418 LINLRCAILDEVDILFNDEDFEVALQSLIS 447 (560)
Q Consensus 418 l~~l~~LViDEah~ll~d~~f~~~l~~Il~ 447 (560)
+..+.++|+-+.+ ++....++++-+
T Consensus 572 l~~~~~VI~~d~p-----~~~~~~~Q~~GR 596 (968)
T 3dmq_A 572 FQFASHMVMFDLP-----FNPDLLEQRIGR 596 (968)
T ss_dssp CTTCCEEECSSCC-----SSHHHHHHHHHT
T ss_pred cccCcEEEEecCC-----CCHHHHHHHhhc
Confidence 8889999876664 344455555443
No 338
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=36.74 E-value=15 Score=37.12 Aligned_cols=16 Identities=25% Similarity=0.256 Sum_probs=13.7
Q ss_pred cEEEEcCCCCcchhhc
Q 008605 307 SCILADQSGSGKTLAY 322 (560)
Q Consensus 307 dvlv~apTGSGKTla~ 322 (560)
.+++++|||||||...
T Consensus 7 ~i~i~GptGsGKTtla 22 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999754
No 339
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=36.71 E-value=25 Score=37.51 Aligned_cols=50 Identities=34% Similarity=0.486 Sum_probs=30.1
Q ss_pred ccccccCCCHHHHHHHHHC--CCCCChHHHHHHHHHH--HcCCcEEEEcCCCCcchhhc
Q 008605 268 KSFKELGCSDYMIESLKRQ--NFLRPSQIQAMAFPPV--VEGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~--g~~~pt~iQ~~aip~i--l~g~dvlv~apTGSGKTla~ 322 (560)
.+|+++.-.++.+..|.+. .+..|. .+..+ .-.+.+++.+|+|+|||+..
T Consensus 13 ~~f~di~G~~~~~~~l~e~v~~l~~~~-----~~~~~g~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 13 VTFKDVGGAEEAIEELKEVVEFLKDPS-----KFNRIGARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCTH-----HHHTTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCHHHhCCcHHHHHHHHHHHHHhhChH-----HHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 5788888777776666542 011111 11111 01256999999999999764
No 340
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=36.66 E-value=53 Score=35.99 Aligned_cols=105 Identities=20% Similarity=0.183 Sum_probs=61.8
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHhhhcC-CCCceEEEEeCC--------cchHHHHHHh---c-CCCcEEEECHHHHHHHH
Q 008605 345 SPRVVILAPTAELASQVLSNCRSLSKC-GVPFRSMVVTGG--------FRQKTQLENL---Q-EGVDVLIATPGRFMFLI 411 (560)
Q Consensus 345 ~~~aLil~PtreLa~Qi~~~l~~l~~~-~~~i~v~~l~gg--------~~~~~~~~~l---~-~~~~IlV~TP~~L~~ll 411 (560)
+.++||.++++..+..+.+.+...... ..++.+..++|+ .+..++...+ . ...+|||+|- .+
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~-----~~ 474 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATT-----VA 474 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEEC-----SC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcc-----cc
Confidence 568999999999999999999865221 125788888888 6555543333 3 3478999993 12
Q ss_pred HhccccCCCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEec
Q 008605 412 KEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTA 460 (560)
Q Consensus 412 ~~~~~~l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSA 460 (560)
...+++.++++||.=+. .++....++++=+.-..+..+++++.
T Consensus 475 -~~GIDip~v~~VI~~d~-----p~s~~~~~Qr~GRArr~g~~~~l~~~ 517 (699)
T 4gl2_A 475 -EEGLDIKECNIVIRYGL-----VTNEIAMVQARGRARADESTYVLVAH 517 (699)
T ss_dssp -CTTSCCCSCCCCEEESC-----CCCHHHHHHHHTTSCSSSCEEEEEEE
T ss_pred -ccCCccccCCEEEEeCC-----CCCHHHHHHHcCCCCCCCceEEEEEe
Confidence 23567888888774222 24455555555442223345555554
No 341
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=36.56 E-value=10 Score=33.91 Aligned_cols=19 Identities=26% Similarity=0.441 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCCcchhhc
Q 008605 304 EGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~ 322 (560)
.|..++++++.|||||...
T Consensus 3 ~g~~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQA 21 (186)
T ss_dssp CEEEEEEECCTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3556889999999999753
No 342
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=36.56 E-value=33 Score=44.37 Aligned_cols=47 Identities=19% Similarity=0.216 Sum_probs=31.5
Q ss_pred CHHHHHHHHHCCCCCChHHH-HHHH---HHHHcCCcEEEEcCCCCcchhhcH
Q 008605 276 SDYMIESLKRQNFLRPSQIQ-AMAF---PPVVEGKSCILADQSGSGKTLAYL 323 (560)
Q Consensus 276 ~~~ll~~L~~~g~~~pt~iQ-~~ai---p~il~g~dvlv~apTGSGKTla~l 323 (560)
.+.+.+.+.+.|+. +++.+ .+++ ..+...+.+++++|||||||.++-
T Consensus 891 ~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 891 VQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHH
Confidence 34566667777775 44444 3332 334456779999999999999864
No 343
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=36.55 E-value=25 Score=38.38 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=18.3
Q ss_pred CCcEEEEcCCCCcchhhcHHHHHH
Q 008605 305 GKSCILADQSGSGKTLAYLLPVIQ 328 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~llpil~ 328 (560)
..+++|.+.||||||.+...-++.
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~s 237 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLS 237 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999775443433
No 344
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=36.25 E-value=21 Score=40.06 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=20.3
Q ss_pred HHHHHHcCCc--EEEEcCCCCcchhhc
Q 008605 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (560)
Q Consensus 298 aip~il~g~d--vlv~apTGSGKTla~ 322 (560)
.+..++.|.| ++..++||||||...
T Consensus 454 ~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 454 LIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEccCCCCCchhhcc
Confidence 5677889987 566789999999764
No 345
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=35.96 E-value=14 Score=37.76 Aligned_cols=16 Identities=25% Similarity=0.279 Sum_probs=13.4
Q ss_pred cEEEEcCCCCcchhhc
Q 008605 307 SCILADQSGSGKTLAY 322 (560)
Q Consensus 307 dvlv~apTGSGKTla~ 322 (560)
-++|++|||||||...
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 4778999999999754
No 346
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=35.81 E-value=19 Score=34.85 Aligned_cols=21 Identities=38% Similarity=0.464 Sum_probs=17.8
Q ss_pred HHcCCcEEEEcCCCCcchhhc
Q 008605 302 VVEGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 302 il~g~dvlv~apTGSGKTla~ 322 (560)
.+.|+.++++++.|+|||...
T Consensus 45 ~l~g~~i~l~G~~GsGKSTl~ 65 (250)
T 3nwj_A 45 YLNGRSMYLVGMMGSGKTTVG 65 (250)
T ss_dssp HHTTCCEEEECSTTSCHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHH
Confidence 345899999999999999764
No 347
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=35.77 E-value=2.4e+02 Score=25.22 Aligned_cols=135 Identities=10% Similarity=0.006 Sum_probs=50.0
Q ss_pred HHcCCcEEEEcCCCCcchhhcHHHHHHHHHHHHhh-ccCCCCCCCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCc-eEEE
Q 008605 302 VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQ-GLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPF-RSMV 379 (560)
Q Consensus 302 il~g~dvlv~apTGSGKTla~llpil~~l~~~~~~-~~~~~~~~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i-~v~~ 379 (560)
-+.|-.+-+.+..|-|=|+.+.+|+...-...... ........+.++|||-........+...+..++ + .+..
T Consensus 17 ~~hgG~i~v~S~~g~Gs~f~~~lP~~~~~~~~~~~~~~~~~~~~~~~ILiVdDd~~~~~~l~~~L~~~g-----~~~v~~ 91 (206)
T 3mm4_A 17 GSHMASTDSESETRVKSVRTGRKPIGNPEDEQETSKPSDDEFLRGKRVLVVDDNFISRKVATGKLKKMG-----VSEVEQ 91 (206)
T ss_dssp --------------------------------------CTTTTTTCEEEEECSCHHHHHHHHHHHHHTT-----CSEEEE
T ss_pred cccCCceeeeccCCCcceeeeccCCCCCcccccccCCCcccccCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCeeee
Confidence 34456777888899999999999975432211100 011122345567777776666555555555431 2 2222
Q ss_pred EeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhc--------cccCCCccEEEEccccccCCCCChHHHHHHHHhh---
Q 008605 380 VTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG--------ILQLINLRCAILDEVDILFNDEDFEVALQSLISS--- 448 (560)
Q Consensus 380 l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~--------~~~l~~l~~LViDEah~ll~d~~f~~~l~~Il~~--- 448 (560)
+.+....+..+... ...-..+++||+|= .|- +..-...++.|.+.
T Consensus 92 ---------------------a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~--~lp-~~~G~el~~~lr~~~~~ 147 (206)
T 3mm4_A 92 ---------------------CDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDC--QMP-EMDGYEATREIRKVEKS 147 (206)
T ss_dssp ---------------------ESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEES--CCS-SSCHHHHHHHHHHHHHT
T ss_pred ---------------------eCCHHHHHHHHHhhcccccccccccCCCCCEEEEcC--CCC-CCCHHHHHHHHHhhhhh
Confidence 22334444444432 11223567889884 233 34434445555443
Q ss_pred CCCCCcEEEEeccC-CHH
Q 008605 449 SPVTAQYLFVTATL-PVE 465 (560)
Q Consensus 449 ~~~~~Q~IllSATl-p~~ 465 (560)
......+|++|+.. ...
T Consensus 148 ~~~~~piI~ls~~~~~~~ 165 (206)
T 3mm4_A 148 YGVRTPIIAVSGHDPGSE 165 (206)
T ss_dssp TTCCCCEEEEESSCCCHH
T ss_pred cCCCCcEEEEECCCCcHH
Confidence 34578899999976 433
No 348
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=35.37 E-value=19 Score=38.04 Aligned_cols=19 Identities=26% Similarity=0.298 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCCcchhhcH
Q 008605 305 GKSCILADQSGSGKTLAYL 323 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~l 323 (560)
..++++.+|+|+|||....
T Consensus 201 ~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp SCEEEEESCTTTTTHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 4589999999999997643
No 349
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=35.20 E-value=14 Score=38.63 Aligned_cols=15 Identities=27% Similarity=0.468 Sum_probs=12.7
Q ss_pred EEEEcCCCCcchhhc
Q 008605 308 CILADQSGSGKTLAY 322 (560)
Q Consensus 308 vlv~apTGSGKTla~ 322 (560)
++|.+|||+|||...
T Consensus 5 i~i~GptgsGKttla 19 (409)
T 3eph_A 5 IVIAGTTGVGKSQLS 19 (409)
T ss_dssp EEEEECSSSSHHHHH
T ss_pred EEEECcchhhHHHHH
Confidence 678999999999653
No 350
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=35.20 E-value=51 Score=36.62 Aligned_cols=67 Identities=15% Similarity=0.157 Sum_probs=49.5
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhcCCCcEEEECHHHHHHHHHhccccCCCccE
Q 008605 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRC 423 (560)
Q Consensus 344 ~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ll~~~~~~l~~l~~ 423 (560)
.+.++||.+++++-+.++++.+++. ++.+..++|+..... ....+.+|||+|. .+.++ +++. +++
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~-----g~~v~~lHG~l~q~e---r~~~~~~VLVATd-----VaerG-IDId-V~~ 459 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGL-----GINAVAYYRGLDVSV---IPTIGDVVVVATD-----ALMTG-YTGD-FDS 459 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTT-----TCCEEEECTTSCGGG---SCSSSCEEEEECT-----THHHH-CCCC-BSE
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhC-----CCcEEEecCCCCHHH---HHhCCCcEEEECC-----hHHcc-CCCC-CcE
Confidence 4568999999999999999988764 468889999887654 2235579999994 33343 4454 777
Q ss_pred EE
Q 008605 424 AI 425 (560)
Q Consensus 424 LV 425 (560)
||
T Consensus 460 VI 461 (666)
T 3o8b_A 460 VI 461 (666)
T ss_dssp EE
T ss_pred EE
Confidence 66
No 351
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=34.96 E-value=89 Score=34.74 Aligned_cols=73 Identities=19% Similarity=0.156 Sum_probs=53.0
Q ss_pred EEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchH---HHHHHhcC---CCcEEEECHHHHHHHHHhccccCCCc
Q 008605 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK---TQLENLQE---GVDVLIATPGRFMFLIKEGILQLINL 421 (560)
Q Consensus 348 aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~---~~~~~l~~---~~~IlV~TP~~L~~ll~~~~~~l~~l 421 (560)
.||+++++.-+.++.+.+.+. ++.+..++|+.... .+.+.+.. ..+|||+|- .+ ...+++ .+
T Consensus 323 ~iIf~~s~~~ie~la~~L~~~-----g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATd-----i~-e~GlDi-~v 390 (677)
T 3rc3_A 323 DCIVCFSKNDIYSVSRQIEIR-----GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATD-----AI-GMGLNL-SI 390 (677)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECG-----GG-GSSCCC-CB
T ss_pred CEEEEcCHHHHHHHHHHHHhc-----CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCc-----HH-HCCcCc-Cc
Confidence 466799999888888888764 46888999998876 34445553 379999995 22 345677 89
Q ss_pred cEEEEcccccc
Q 008605 422 RCAILDEVDIL 432 (560)
Q Consensus 422 ~~LViDEah~l 432 (560)
++||.-.+...
T Consensus 391 ~~VI~~~~~k~ 401 (677)
T 3rc3_A 391 RRIIFYSLIKP 401 (677)
T ss_dssp SEEEESCSBC-
T ss_pred cEEEECCcccc
Confidence 99998777543
No 352
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=34.91 E-value=14 Score=32.90 Aligned_cols=16 Identities=25% Similarity=0.250 Sum_probs=13.2
Q ss_pred cEEEEcCCCCcchhhc
Q 008605 307 SCILADQSGSGKTLAY 322 (560)
Q Consensus 307 dvlv~apTGSGKTla~ 322 (560)
-.++++++|+|||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4578999999999753
No 353
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=34.91 E-value=20 Score=33.39 Aligned_cols=16 Identities=44% Similarity=0.852 Sum_probs=13.6
Q ss_pred cEEEEcCCCCcchhhc
Q 008605 307 SCILADQSGSGKTLAY 322 (560)
Q Consensus 307 dvlv~apTGSGKTla~ 322 (560)
-.+++++.|||||+..
T Consensus 7 i~l~tG~pGsGKT~~a 22 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKM 22 (199)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 4689999999999864
No 354
>1cn3_F Fragment of coat protein VP2; viral coat protein VP1, viral coat protein VP2, viral entry, viral protein; 2.20A {Polyomavirus}
Probab=34.88 E-value=13 Score=22.84 Aligned_cols=18 Identities=44% Similarity=0.802 Sum_probs=8.2
Q ss_pred CCCCCCCCCCCcccCCCC
Q 008605 63 GGDGGGGGYSRTPLETAG 80 (560)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~ 80 (560)
||+|+|+|-.+-+--||+
T Consensus 1 ggggggggaashqrvtpd 18 (29)
T 1cn3_F 1 GGGGGGGGAASHQRVTPD 18 (29)
T ss_dssp CCCCCCSTTTCCCCCEEG
T ss_pred CCCCCCCccccccccCch
Confidence 344555554444434443
No 355
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=34.33 E-value=15 Score=32.28 Aligned_cols=14 Identities=36% Similarity=0.560 Sum_probs=12.5
Q ss_pred EEEEcCCCCcchhh
Q 008605 308 CILADQSGSGKTLA 321 (560)
Q Consensus 308 vlv~apTGSGKTla 321 (560)
.+|.+|+|+|||..
T Consensus 26 ~~I~G~NGsGKSti 39 (149)
T 1f2t_A 26 NLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 67899999999976
No 356
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=34.14 E-value=14 Score=33.78 Aligned_cols=19 Identities=32% Similarity=0.345 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCCcchhhc
Q 008605 304 EGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~ 322 (560)
.|.-+.+.+++|||||...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4667889999999999754
No 357
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=33.72 E-value=14 Score=33.00 Aligned_cols=18 Identities=17% Similarity=0.202 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCCcchhhc
Q 008605 305 GKSCILADQSGSGKTLAY 322 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~ 322 (560)
+.-+++.+++|||||...
T Consensus 3 ~~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 345789999999999754
No 358
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=33.65 E-value=18 Score=33.87 Aligned_cols=19 Identities=37% Similarity=0.457 Sum_probs=11.7
Q ss_pred cCCcEEEEcCCCCcchhhc
Q 008605 304 EGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~ 322 (560)
.|.-+.+.+|+|+|||...
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp CCCEEEEECSCC----CHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667889999999999753
No 359
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=33.61 E-value=16 Score=32.92 Aligned_cols=17 Identities=29% Similarity=0.485 Sum_probs=13.7
Q ss_pred CcEEEEcCCCCcchhhc
Q 008605 306 KSCILADQSGSGKTLAY 322 (560)
Q Consensus 306 ~dvlv~apTGSGKTla~ 322 (560)
.-+++++|+|+|||...
T Consensus 3 ~ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 34678999999999753
No 360
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=33.45 E-value=16 Score=33.36 Aligned_cols=17 Identities=35% Similarity=0.376 Sum_probs=14.4
Q ss_pred CcEEEEcCCCCcchhhc
Q 008605 306 KSCILADQSGSGKTLAY 322 (560)
Q Consensus 306 ~dvlv~apTGSGKTla~ 322 (560)
+-++++++.|||||...
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46899999999999753
No 361
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=33.35 E-value=15 Score=35.48 Aligned_cols=51 Identities=24% Similarity=0.240 Sum_probs=30.1
Q ss_pred ccccccCCCHHHHHHHHHCCCCCChHHHHHHHHHHH--cCCcEEEEcCCCCcchhh
Q 008605 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVV--EGKSCILADQSGSGKTLA 321 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g~~~pt~iQ~~aip~il--~g~dvlv~apTGSGKTla 321 (560)
.+|+++...+.+...+...-.. . -...++..+- -.+.+++.+|+|+|||..
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~--~-~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl 89 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEF--L-KNPSRFHEMGARIPKGVLLVGPPGVGKTHL 89 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHH--H-HCHHHHHHTTCCCCCEEEEECCTTSSHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHHH--H-HCHHHHHHcCCCCCCeEEEECCCcChHHHH
Confidence 5788888777777766543110 0 0011222211 124599999999999975
No 362
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=33.16 E-value=15 Score=32.89 Aligned_cols=18 Identities=22% Similarity=0.239 Sum_probs=14.6
Q ss_pred CCcEEEEcCCCCcchhhc
Q 008605 305 GKSCILADQSGSGKTLAY 322 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~ 322 (560)
+.-++++++.|||||...
T Consensus 5 ~~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLS 22 (193)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345789999999999753
No 363
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=32.80 E-value=20 Score=32.16 Aligned_cols=20 Identities=20% Similarity=0.239 Sum_probs=16.2
Q ss_pred HcCCcEEEEcCCCCcchhhc
Q 008605 303 VEGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 303 l~g~dvlv~apTGSGKTla~ 322 (560)
..+.-+++.++.|||||...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 34567899999999999753
No 364
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=32.61 E-value=15 Score=40.21 Aligned_cols=15 Identities=13% Similarity=0.355 Sum_probs=13.9
Q ss_pred cEEEEcCCCCcchhh
Q 008605 307 SCILADQSGSGKTLA 321 (560)
Q Consensus 307 dvlv~apTGSGKTla 321 (560)
++++.+|+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999974
No 365
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=32.61 E-value=57 Score=35.79 Aligned_cols=67 Identities=10% Similarity=0.089 Sum_probs=46.0
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhc-CCCcEEEECHHHHHHHHHhccccCCCccE
Q 008605 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ-EGVDVLIATPGRFMFLIKEGILQLINLRC 423 (560)
Q Consensus 345 ~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~-~~~~IlV~TP~~L~~ll~~~~~~l~~l~~ 423 (560)
..++||.++++.-+..+++.+++. ++++..++|.... ...+.+. ...+|||+|. .+. ..+++. +++
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~-----g~~v~~lhg~~R~-~~l~~F~~g~~~VLVaTd-----v~~-rGiDi~-v~~ 421 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKS-----GKRVIQLSRKTFD-TEYPKTKLTDWDFVVTTD-----ISE-MGANFR-AGR 421 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTTHH-HHTTHHHHSCCSEEEECG-----GGG-TTCCCC-CSE
T ss_pred CCCEEEEECChhHHHHHHHHHHHc-----CCcEEEEChHHHH-HHHHhhcCCCcEEEEECc-----HHH-cCcccC-ceE
Confidence 447999999999999999998875 4577888875332 2223332 4589999995 233 345564 776
Q ss_pred E
Q 008605 424 A 424 (560)
Q Consensus 424 L 424 (560)
|
T Consensus 422 V 422 (618)
T 2whx_A 422 V 422 (618)
T ss_dssp E
T ss_pred E
Confidence 6
No 366
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=32.59 E-value=16 Score=35.86 Aligned_cols=16 Identities=44% Similarity=0.559 Sum_probs=13.5
Q ss_pred cEEEEcCCCCcchhhc
Q 008605 307 SCILADQSGSGKTLAY 322 (560)
Q Consensus 307 dvlv~apTGSGKTla~ 322 (560)
-+++++|+|||||...
T Consensus 35 livl~G~sGsGKSTla 50 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEECCTTSCTHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999753
No 367
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=32.56 E-value=18 Score=33.36 Aligned_cols=30 Identities=20% Similarity=0.145 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHcCCcEEEEcCCCCcchhhc
Q 008605 292 SQIQAMAFPPVVEGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 292 t~iQ~~aip~il~g~dvlv~apTGSGKTla~ 322 (560)
+..++.. ..+..|.-+++.++.|||||...
T Consensus 13 ~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 13 TRSERTE-LRNQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp CHHHHHH-HHTSSCEEEEEECSTTSSHHHHH
T ss_pred CHHHhhc-ccCCCCCEEEEECCCCCCHHHHH
Confidence 3444444 23456677889999999999753
No 368
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=32.54 E-value=55 Score=32.81 Aligned_cols=71 Identities=18% Similarity=0.193 Sum_probs=44.6
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHh---c-CCCcEEEECHHHHHHHHHhccccCCC
Q 008605 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLIN 420 (560)
Q Consensus 345 ~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l---~-~~~~IlV~TP~~L~~ll~~~~~~l~~ 420 (560)
..++||.+++++-+..+++.+... ++.+..++|+.....+...+ . ...+|||+|. .+ ...+++..
T Consensus 280 ~~~~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidip~ 348 (414)
T 3eiq_A 280 ITQAVIFINTRRKVDWLTEKMHAR-----DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD-----LL-ARGIDVQQ 348 (414)
T ss_dssp CSSCEEECSCHHHHHHHHHHHHTT-----TCCCEEC---CHHHHHHHHHHHHSCC---CEEECS-----SC-C--CCGGG
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhc-----CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECC-----cc-ccCCCccC
Confidence 457999999999999998888754 46778888887665543333 3 3478999994 11 23456777
Q ss_pred ccEEEE
Q 008605 421 LRCAIL 426 (560)
Q Consensus 421 l~~LVi 426 (560)
++++|.
T Consensus 349 v~~Vi~ 354 (414)
T 3eiq_A 349 VSLVIN 354 (414)
T ss_dssp CSCEEE
T ss_pred CCEEEE
Confidence 888775
No 369
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=32.35 E-value=19 Score=32.56 Aligned_cols=19 Identities=26% Similarity=0.333 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCCcchhhc
Q 008605 304 EGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~ 322 (560)
.|+-+++.++.|||||...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4567899999999999753
No 370
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=32.29 E-value=16 Score=33.64 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=13.8
Q ss_pred CCcEEEEcCCCCcchhh
Q 008605 305 GKSCILADQSGSGKTLA 321 (560)
Q Consensus 305 g~dvlv~apTGSGKTla 321 (560)
|.-+.|.+|+|||||..
T Consensus 22 g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTL 38 (208)
T ss_dssp CEEEEEECCTTSCTHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 44577899999999964
No 371
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=32.11 E-value=18 Score=32.43 Aligned_cols=19 Identities=26% Similarity=0.309 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCCcchhhc
Q 008605 304 EGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~ 322 (560)
.+.-++++++.|||||...
T Consensus 11 ~~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp HSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4567889999999999753
No 372
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=31.84 E-value=26 Score=32.58 Aligned_cols=52 Identities=15% Similarity=0.114 Sum_probs=27.0
Q ss_pred ccEEEEccccccCCCC--Ch--HHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHHh
Q 008605 421 LRCAILDEVDILFNDE--DF--EVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEV 473 (560)
Q Consensus 421 l~~LViDEah~ll~d~--~f--~~~l~~Il~~~~~~~Q~IllSATlp~~v~~~l~~~ 473 (560)
-.+|||||||.++... .. ...+..+...-....++|+++.. +..+...+...
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~-~~~l~~~lr~r 143 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQG-PKLLDQNLRTL 143 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESC-GGGBCHHHHTT
T ss_pred ceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCC-HHHHhHHHHHH
Confidence 4579999999995211 11 11222222222345688887776 43333334333
No 373
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=31.76 E-value=19 Score=31.94 Aligned_cols=17 Identities=29% Similarity=0.370 Sum_probs=14.3
Q ss_pred CcEEEEcCCCCcchhhc
Q 008605 306 KSCILADQSGSGKTLAY 322 (560)
Q Consensus 306 ~dvlv~apTGSGKTla~ 322 (560)
+.+++.++.|||||...
T Consensus 5 ~~i~i~G~~GsGKsTla 21 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 36889999999999753
No 374
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=31.64 E-value=20 Score=32.56 Aligned_cols=31 Identities=13% Similarity=0.225 Sum_probs=19.0
Q ss_pred CCCccEEEEccccccCC-CCChHHHHHHHHhh
Q 008605 418 LINLRCAILDEVDILFN-DEDFEVALQSLISS 448 (560)
Q Consensus 418 l~~l~~LViDEah~ll~-d~~f~~~l~~Il~~ 448 (560)
..+.+++|+||++-+.. |..+...+..++..
T Consensus 97 ~~~p~llilDEigp~~~ld~~~~~~l~~~l~~ 128 (178)
T 1ye8_A 97 KDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD 128 (178)
T ss_dssp HCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC
T ss_pred ccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc
Confidence 34668999999653321 44456666666554
No 375
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=31.63 E-value=38 Score=35.50 Aligned_cols=68 Identities=7% Similarity=0.056 Sum_probs=44.1
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhc-CCCcEEEECHHHHHHHHHhccccCCCccE
Q 008605 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ-EGVDVLIATPGRFMFLIKEGILQLINLRC 423 (560)
Q Consensus 345 ~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~-~~~~IlV~TP~~L~~ll~~~~~~l~~l~~ 423 (560)
+.++||.+|++.-+..+++.++.. ++.+..++|..... ....+. ...+|||+|- .+. ..+++.. ++
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~-----g~~v~~lh~~~R~~-~~~~f~~g~~~iLVaT~-----v~~-~GiDip~-~~ 256 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRA-----GKKVIQLNRKSYDT-EYPKCKNGDWDFVITTD-----ISE-MGANFGA-SR 256 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT-----TCCEEEESTTCCCC-CGGGSSSCCCSEEEESS-----CC----CCCSC-SE
T ss_pred CCCEEEEeCChHHHHHHHHHHHhc-----CCcEEecCHHHHHH-HHhhccCCCceEEEECC-----hHH-hCeecCC-CE
Confidence 346999999999999999988875 46777888754321 222333 3478999993 222 2455666 55
Q ss_pred EE
Q 008605 424 AI 425 (560)
Q Consensus 424 LV 425 (560)
||
T Consensus 257 VI 258 (459)
T 2z83_A 257 VI 258 (459)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 376
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=31.35 E-value=20 Score=32.94 Aligned_cols=19 Identities=26% Similarity=0.144 Sum_probs=15.3
Q ss_pred cCCcEEEEcCCCCcchhhc
Q 008605 304 EGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~ 322 (560)
.|.-+.+.+|+|+|||...
T Consensus 24 ~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp SSEEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4556889999999999754
No 377
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=31.25 E-value=17 Score=37.12 Aligned_cols=16 Identities=19% Similarity=0.505 Sum_probs=13.5
Q ss_pred cEEEEcCCCCcchhhc
Q 008605 307 SCILADQSGSGKTLAY 322 (560)
Q Consensus 307 dvlv~apTGSGKTla~ 322 (560)
-+++++|||+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4678999999999765
No 378
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=31.09 E-value=19 Score=31.62 Aligned_cols=17 Identities=29% Similarity=0.331 Sum_probs=14.8
Q ss_pred CcEEEEcCCCCcchhhc
Q 008605 306 KSCILADQSGSGKTLAY 322 (560)
Q Consensus 306 ~dvlv~apTGSGKTla~ 322 (560)
+++++.++.|||||...
T Consensus 8 ~~i~l~G~~GsGKSTva 24 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLA 24 (168)
T ss_dssp CEEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 57899999999999754
No 379
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=30.63 E-value=19 Score=33.48 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=15.1
Q ss_pred cCCcEEEEcCCCCcchhhc
Q 008605 304 EGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~ 322 (560)
.+..+++.+++|||||...
T Consensus 6 ~~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp -CCEEEEEECTTSSHHHHH
T ss_pred cCcEEEEECCCCCCHHHHH
Confidence 3467899999999999753
No 380
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=30.58 E-value=22 Score=31.74 Aligned_cols=17 Identities=29% Similarity=0.395 Sum_probs=14.3
Q ss_pred CcEEEEcCCCCcchhhc
Q 008605 306 KSCILADQSGSGKTLAY 322 (560)
Q Consensus 306 ~dvlv~apTGSGKTla~ 322 (560)
..++++++.|||||...
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG 19 (184)
T ss_dssp CSEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45889999999999754
No 381
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=30.56 E-value=19 Score=33.06 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=13.6
Q ss_pred cEEEEcCCCCcchhhc
Q 008605 307 SCILADQSGSGKTLAY 322 (560)
Q Consensus 307 dvlv~apTGSGKTla~ 322 (560)
.+++.++.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQA 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999754
No 382
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=30.31 E-value=31 Score=37.83 Aligned_cols=79 Identities=18% Similarity=0.211 Sum_probs=44.1
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeC--------CcchHHHHH---Hhc--CCCcEEEECHHHHHHH
Q 008605 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG--------GFRQKTQLE---NLQ--EGVDVLIATPGRFMFL 410 (560)
Q Consensus 344 ~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~g--------g~~~~~~~~---~l~--~~~~IlV~TP~~L~~l 410 (560)
.+.++||.++++.-+..+++.++..... ..+++..++| +....++.. .+. ...+|||+|- .
T Consensus 397 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~-~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~-----v 470 (696)
T 2ykg_A 397 PETITILFVKTRALVDALKNWIEGNPKL-SFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS-----V 470 (696)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHCTTC-CSCCEEC-----------------------------CCSCSEEEE-----S
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCCCc-cccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEec-----h
Confidence 3567999999999999999999876432 2366777754 544433322 233 3478999992 1
Q ss_pred HHhccccCCCccEEEEccc
Q 008605 411 IKEGILQLINLRCAILDEV 429 (560)
Q Consensus 411 l~~~~~~l~~l~~LViDEa 429 (560)
+ ...+++..+++||.=+.
T Consensus 471 ~-~~GiDip~v~~VI~~d~ 488 (696)
T 2ykg_A 471 A-DEGIDIAQCNLVILYEY 488 (696)
T ss_dssp S-CCC---CCCSEEEEESC
T ss_pred h-hcCCcCccCCEEEEeCC
Confidence 1 24567888998886444
No 383
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=30.29 E-value=18 Score=32.24 Aligned_cols=19 Identities=37% Similarity=0.459 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCCcchhhc
Q 008605 304 EGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~ 322 (560)
.|.-+++.++.|||||...
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3566889999999999753
No 384
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=29.94 E-value=21 Score=33.10 Aligned_cols=18 Identities=17% Similarity=0.233 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCCcchhhc
Q 008605 305 GKSCILADQSGSGKTLAY 322 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~ 322 (560)
+..+++.++.|||||...
T Consensus 5 ~~~I~l~G~~GsGKsT~~ 22 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQC 22 (222)
T ss_dssp SCCEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 457899999999999754
No 385
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=29.83 E-value=20 Score=32.97 Aligned_cols=16 Identities=25% Similarity=0.326 Sum_probs=13.6
Q ss_pred cEEEEcCCCCcchhhc
Q 008605 307 SCILADQSGSGKTLAY 322 (560)
Q Consensus 307 dvlv~apTGSGKTla~ 322 (560)
.+++.++.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999754
No 386
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=29.64 E-value=25 Score=33.94 Aligned_cols=23 Identities=30% Similarity=0.487 Sum_probs=18.3
Q ss_pred HHcCCcEEEEcCCCCcchhhcHH
Q 008605 302 VVEGKSCILADQSGSGKTLAYLL 324 (560)
Q Consensus 302 il~g~dvlv~apTGSGKTla~ll 324 (560)
+..|.-+++.+|+|+|||.....
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~ 49 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQ 49 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHH
Confidence 45677889999999999976543
No 387
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=29.57 E-value=19 Score=46.43 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=18.0
Q ss_pred HHcCCcEEEEcCCCCcchhhc
Q 008605 302 VVEGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 302 il~g~dvlv~apTGSGKTla~ 322 (560)
+..++++++++|||+|||+..
T Consensus 1264 l~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHHH
T ss_pred HHCCCeEEEECCCCCCHHHHH
Confidence 456889999999999999754
No 388
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=29.48 E-value=35 Score=34.73 Aligned_cols=86 Identities=16% Similarity=0.184 Sum_probs=54.9
Q ss_pred CEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEE-EEeCCcchHHHHHHhcC-CCcEEEE----CHHHHHHHHHhccccCC
Q 008605 346 PRVVILAPTAELASQVLSNCRSLSKCGVPFRSM-VVTGGFRQKTQLENLQE-GVDVLIA----TPGRFMFLIKEGILQLI 419 (560)
Q Consensus 346 ~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~-~l~gg~~~~~~~~~l~~-~~~IlV~----TP~~L~~ll~~~~~~l~ 419 (560)
.++||.|+++.-+..++..++.. ++.+. .++|. ... ...+.. ..+|||+ |- .+ ...+++.
T Consensus 253 ~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~h~~--~r~-~~~f~~g~~~vLvat~s~T~-----~~-~~GiDip 318 (414)
T 3oiy_A 253 DGILIFAQTEEEGKELYEYLKRF-----KFNVGETWSEF--EKN-FEDFKVGKINILIGVQAYYG-----KL-TRGVDLP 318 (414)
T ss_dssp SSEEEEESSHHHHHHHHHHHHHT-----TCCEEESSSCH--HHH-HHHHHTTSCSEEEEECCTTC-----CC-CCCCCCT
T ss_pred CCEEEEECCHHHHHHHHHHHHHc-----CCceehhhcCc--chH-HHHHhCCCCeEEEEecCcCc-----hh-hccCccc
Confidence 46999999999999999988865 35665 55554 222 445543 4899999 62 11 3456788
Q ss_pred C-ccEEEEccccccCCCCChHHHHHHHHhh
Q 008605 420 N-LRCAILDEVDILFNDEDFEVALQSLISS 448 (560)
Q Consensus 420 ~-l~~LViDEah~ll~d~~f~~~l~~Il~~ 448 (560)
+ ++++|.-.+.. .......++++=+.
T Consensus 319 ~~v~~VI~~~~p~---~~~~~~y~qr~GR~ 345 (414)
T 3oiy_A 319 ERIKYVIFWGTPS---GPDVYTYIQASGRS 345 (414)
T ss_dssp TTCCEEEEESCCT---TTCHHHHHHHHGGG
T ss_pred cccCEEEEECCCC---CCCHHHHHHHhCcc
Confidence 8 88887543321 03455555555443
No 389
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=29.46 E-value=22 Score=32.81 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCCcchhhc
Q 008605 305 GKSCILADQSGSGKTLAY 322 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~ 322 (560)
+..+++.++.|||||...
T Consensus 4 ~~~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQA 21 (220)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 457899999999999753
No 390
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=29.35 E-value=20 Score=37.81 Aligned_cols=18 Identities=28% Similarity=0.366 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCCcchhhc
Q 008605 305 GKSCILADQSGSGKTLAY 322 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~ 322 (560)
.+++++.+|+|+|||...
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 468999999999999754
No 391
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=29.22 E-value=21 Score=31.76 Aligned_cols=16 Identities=25% Similarity=0.354 Sum_probs=13.3
Q ss_pred cEEEEcCCCCcchhhc
Q 008605 307 SCILADQSGSGKTLAY 322 (560)
Q Consensus 307 dvlv~apTGSGKTla~ 322 (560)
-+++.++.|||||...
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999753
No 392
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=29.14 E-value=19 Score=36.65 Aligned_cols=15 Identities=27% Similarity=0.583 Sum_probs=0.0
Q ss_pred EEEEcCCCCcchhhc
Q 008605 308 CILADQSGSGKTLAY 322 (560)
Q Consensus 308 vlv~apTGSGKTla~ 322 (560)
.+++++||+|||..+
T Consensus 28 ~vi~G~NGaGKT~il 42 (371)
T 3auy_A 28 VAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
No 393
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=28.98 E-value=1.1e+02 Score=32.03 Aligned_cols=34 Identities=15% Similarity=0.265 Sum_probs=25.6
Q ss_pred CChHHHHHHHHHHH---cCCcEEEEcCCCCcchhhcH
Q 008605 290 RPSQIQAMAFPPVV---EGKSCILADQSGSGKTLAYL 323 (560)
Q Consensus 290 ~pt~iQ~~aip~il---~g~dvlv~apTGSGKTla~l 323 (560)
.|-..-.++|..++ .|+.+.+.+|+|+|||....
T Consensus 156 ~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~ 192 (422)
T 3ice_A 156 STEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQ 192 (422)
T ss_dssp CTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHH
T ss_pred CcccccceeeeeeeeecCCcEEEEecCCCCChhHHHH
Confidence 34455567777655 68899999999999997643
No 394
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=28.98 E-value=23 Score=30.99 Aligned_cols=17 Identities=18% Similarity=0.262 Sum_probs=14.2
Q ss_pred CcEEEEcCCCCcchhhc
Q 008605 306 KSCILADQSGSGKTLAY 322 (560)
Q Consensus 306 ~dvlv~apTGSGKTla~ 322 (560)
+.+++.++.|||||...
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVG 19 (173)
T ss_dssp CCEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45889999999999753
No 395
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=28.91 E-value=27 Score=39.20 Aligned_cols=20 Identities=25% Similarity=0.282 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCCcchhhcH
Q 008605 304 EGKSCILADQSGSGKTLAYL 323 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~l 323 (560)
...++++.+|+|+|||...-
T Consensus 200 ~~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp SSCEEEEESCTTTTTHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHH
Confidence 34589999999999998643
No 396
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=28.87 E-value=21 Score=32.56 Aligned_cols=18 Identities=28% Similarity=0.087 Sum_probs=14.1
Q ss_pred CCcEEEEcCCCCcchhhc
Q 008605 305 GKSCILADQSGSGKTLAY 322 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~ 322 (560)
|.-+.+.+|+|||||...
T Consensus 6 ~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred cEEEEEECCCCCCHHHHH
Confidence 445678999999999753
No 397
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=28.80 E-value=23 Score=32.15 Aligned_cols=17 Identities=24% Similarity=0.335 Sum_probs=14.3
Q ss_pred CcEEEEcCCCCcchhhc
Q 008605 306 KSCILADQSGSGKTLAY 322 (560)
Q Consensus 306 ~dvlv~apTGSGKTla~ 322 (560)
..++++++.|||||...
T Consensus 21 ~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999753
No 398
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=28.66 E-value=22 Score=31.62 Aligned_cols=16 Identities=25% Similarity=0.327 Sum_probs=13.5
Q ss_pred cEEEEcCCCCcchhhc
Q 008605 307 SCILADQSGSGKTLAY 322 (560)
Q Consensus 307 dvlv~apTGSGKTla~ 322 (560)
-++++++.|||||...
T Consensus 8 ~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999753
No 399
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=28.46 E-value=34 Score=31.02 Aligned_cols=40 Identities=23% Similarity=0.346 Sum_probs=28.7
Q ss_pred CccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEec
Q 008605 420 NLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTA 460 (560)
Q Consensus 420 ~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSA 460 (560)
.-.++++||.+.-+ |......+..++..+....|+|++|-
T Consensus 86 ~~~~llLDEp~a~L-D~~~~~~~~~~l~~~~~~~~~ivith 125 (173)
T 3kta_B 86 PAPFYLFDEIDAHL-DDANVKRVADLIKESSKESQFIVITL 125 (173)
T ss_dssp CCSEEEEESTTTTC-CHHHHHHHHHHHHHHTTTSEEEEECS
T ss_pred CCCEEEECCCccCC-CHHHHHHHHHHHHHhccCCEEEEEEe
Confidence 34689999999988 66555666666665555678877764
No 400
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=28.23 E-value=24 Score=32.56 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=14.1
Q ss_pred CcEEEEcCCCCcchhhc
Q 008605 306 KSCILADQSGSGKTLAY 322 (560)
Q Consensus 306 ~dvlv~apTGSGKTla~ 322 (560)
..+.+.+++|||||...
T Consensus 6 ~~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLC 22 (227)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45788999999999754
No 401
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=28.14 E-value=38 Score=36.12 Aligned_cols=36 Identities=25% Similarity=0.181 Sum_probs=27.1
Q ss_pred CCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEE
Q 008605 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFV 458 (560)
Q Consensus 419 ~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~Ill 458 (560)
..++++|||||+.| |......+-.+++.+ +.|+|+.
T Consensus 413 ~~~rlvvlDEA~km--D~~~~~~~~~l~~~l--glQliia 448 (483)
T 3euj_A 413 LPCRLLFLDQAARL--DAMSINTLFELCERL--DMQLLIA 448 (483)
T ss_dssp CCCCEEEESSGGGS--CHHHHHHHHHHHHHT--TCEEEEE
T ss_pred CceeEEEEeccccC--CHHHHHHHHHHHHHc--CCEEEEE
Confidence 57999999999666 566666677777765 6788863
No 402
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=27.99 E-value=21 Score=32.04 Aligned_cols=19 Identities=37% Similarity=0.408 Sum_probs=15.3
Q ss_pred cCCcEEEEcCCCCcchhhc
Q 008605 304 EGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~ 322 (560)
.|.-++++++.|||||...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3456889999999999754
No 403
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=27.87 E-value=83 Score=24.10 Aligned_cols=27 Identities=15% Similarity=0.169 Sum_probs=23.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhhcc
Q 008605 528 PVSKTIVFCNKVCFSYKCNNLFGFFSE 554 (560)
Q Consensus 528 ~~~ktIIFcnS~~~a~~la~~Lk~l~~ 554 (560)
+..+++|||.+-..+..++..|+.++-
T Consensus 40 ~~~~ivv~C~~g~rs~~aa~~L~~~G~ 66 (85)
T 2jtq_A 40 KNDTVKVYCNAGRQSGQAKEILSEMGY 66 (85)
T ss_dssp TTSEEEEEESSSHHHHHHHHHHHHTTC
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHcCC
Confidence 457899999998899999999998753
No 404
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=27.80 E-value=27 Score=33.24 Aligned_cols=31 Identities=13% Similarity=0.076 Sum_probs=21.3
Q ss_pred CCCccEEEEccccccCCCCChHHHHHHHHhhC
Q 008605 418 LINLRCAILDEVDILFNDEDFEVALQSLISSS 449 (560)
Q Consensus 418 l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~ 449 (560)
+.+-++|++||.-.-+ |......+..++..+
T Consensus 161 ~~~p~llllDEPts~L-D~~~~~~i~~~l~~l 191 (235)
T 3tif_A 161 ANNPPIILADQPTWAL-DSKTGEKIMQLLKKL 191 (235)
T ss_dssp TTCCSEEEEESTTTTS-CHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEeCCcccC-CHHHHHHHHHHHHHH
Confidence 4456789999998887 655555555555544
No 405
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=27.76 E-value=25 Score=31.98 Aligned_cols=19 Identities=26% Similarity=0.358 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCCcchhhc
Q 008605 304 EGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~ 322 (560)
.+.-++++++.|||||...
T Consensus 9 ~~~~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQS 27 (212)
T ss_dssp CSCEEEEEESTTSSHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHH
Confidence 3567889999999999753
No 406
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=27.75 E-value=21 Score=31.62 Aligned_cols=18 Identities=22% Similarity=0.171 Sum_probs=11.1
Q ss_pred CCcEEEEcCCCCcchhhc
Q 008605 305 GKSCILADQSGSGKTLAY 322 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~ 322 (560)
+.-+++.++.|||||...
T Consensus 5 ~~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTA 22 (183)
T ss_dssp CCEEEEECCC----CHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 566889999999999754
No 407
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=27.51 E-value=22 Score=32.22 Aligned_cols=16 Identities=25% Similarity=0.260 Sum_probs=13.4
Q ss_pred cEEEEcCCCCcchhhc
Q 008605 307 SCILADQSGSGKTLAY 322 (560)
Q Consensus 307 dvlv~apTGSGKTla~ 322 (560)
.+.+.++.|||||...
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4778999999999753
No 408
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=27.49 E-value=32 Score=31.55 Aligned_cols=43 Identities=19% Similarity=0.257 Sum_probs=27.9
Q ss_pred CCCccEEEEccccccCC-CCChHHHHHHHHhhCCCCCcEEEEeccCC
Q 008605 418 LINLRCAILDEVDILFN-DEDFEVALQSLISSSPVTAQYLFVTATLP 463 (560)
Q Consensus 418 l~~l~~LViDEah~ll~-d~~f~~~l~~Il~~~~~~~Q~IllSATlp 463 (560)
+...++||+||+..+-. +..|...++.++.. ...+|+-++|++
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~---~~~~ilgti~vs 146 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLST---PGTIILGTIPVP 146 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC---SSCCEEEECCCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhC---CCcEEEEEeecC
Confidence 45678999999877731 34577777777763 223454466763
No 409
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=27.15 E-value=26 Score=31.83 Aligned_cols=19 Identities=21% Similarity=0.310 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCCcchhhc
Q 008605 304 EGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~ 322 (560)
.+.-++++++.|||||...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQS 26 (215)
T ss_dssp CCCEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4667899999999999764
No 410
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=27.07 E-value=24 Score=32.19 Aligned_cols=18 Identities=22% Similarity=0.110 Sum_probs=14.5
Q ss_pred cCCcEEEEcCCCCcchhh
Q 008605 304 EGKSCILADQSGSGKTLA 321 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla 321 (560)
.+.-+.+.+++|||||..
T Consensus 20 ~~~~i~i~G~~GsGKSTl 37 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTL 37 (207)
T ss_dssp CCEEEEEEESTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 345677999999999974
No 411
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=26.94 E-value=31 Score=34.48 Aligned_cols=18 Identities=11% Similarity=0.279 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCCcchhh
Q 008605 304 EGKSCILADQSGSGKTLA 321 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla 321 (560)
.|.-+.+++|+|+|||..
T Consensus 125 ~Ge~vaIvGpsGsGKSTL 142 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSML 142 (305)
T ss_dssp TCSEEEEECSSSSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 577888999999999964
No 412
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=26.91 E-value=21 Score=32.37 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=15.3
Q ss_pred cCCcEEEEcCCCCcchhhc
Q 008605 304 EGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~ 322 (560)
.+.-+++.++.|||||...
T Consensus 3 ~~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH
Confidence 3556889999999999753
No 413
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=26.89 E-value=25 Score=30.66 Aligned_cols=16 Identities=25% Similarity=0.077 Sum_probs=13.5
Q ss_pred cEEEEcCCCCcchhhc
Q 008605 307 SCILADQSGSGKTLAY 322 (560)
Q Consensus 307 dvlv~apTGSGKTla~ 322 (560)
.+++.++.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4789999999999753
No 414
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=26.68 E-value=25 Score=33.01 Aligned_cols=19 Identities=26% Similarity=0.445 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCCcchhhc
Q 008605 304 EGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~ 322 (560)
.+..+++.++.|||||...
T Consensus 15 ~~~~I~l~G~~GsGKsT~a 33 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQA 33 (233)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3467999999999999753
No 415
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=26.38 E-value=25 Score=31.84 Aligned_cols=16 Identities=19% Similarity=0.281 Sum_probs=13.5
Q ss_pred cEEEEcCCCCcchhhc
Q 008605 307 SCILADQSGSGKTLAY 322 (560)
Q Consensus 307 dvlv~apTGSGKTla~ 322 (560)
-++++++.|||||...
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999753
No 416
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=26.03 E-value=14 Score=38.66 Aligned_cols=70 Identities=13% Similarity=0.161 Sum_probs=0.0
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHh---c-CCCcEEEECHHHHHHHHHhccccCCC
Q 008605 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLIN 420 (560)
Q Consensus 345 ~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l---~-~~~~IlV~TP~~L~~ll~~~~~~l~~ 420 (560)
..++||.|+++.-+..++..+... ++.+..++|+.....+...+ . ...+|||+|. .+. ..+++.+
T Consensus 333 ~~~~lvF~~s~~~~~~l~~~L~~~-----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~-----~~~-~GlDip~ 401 (479)
T 3fmp_B 333 IAQAMIFCHTRKTASWLAAELSKE-----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCA-RGIDVEQ 401 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEeCcHHHHHHHHHHHHhC-----CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcc-----ccc-cCCcccc
Confidence 457999999999999988888764 45677788887654443322 2 2478999993 222 3567778
Q ss_pred ccEEE
Q 008605 421 LRCAI 425 (560)
Q Consensus 421 l~~LV 425 (560)
+.+||
T Consensus 402 v~~VI 406 (479)
T 3fmp_B 402 VSVVI 406 (479)
T ss_dssp -----
T ss_pred CCEEE
Confidence 88776
No 417
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=26.01 E-value=25 Score=31.99 Aligned_cols=16 Identities=38% Similarity=0.260 Sum_probs=13.1
Q ss_pred cEEEEcCCCCcchhhc
Q 008605 307 SCILADQSGSGKTLAY 322 (560)
Q Consensus 307 dvlv~apTGSGKTla~ 322 (560)
.+.+.++.|||||...
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999753
No 418
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=25.50 E-value=1.7e+02 Score=32.10 Aligned_cols=76 Identities=12% Similarity=0.128 Sum_probs=51.4
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHhhhcC-C------------------------------CCceEEEEeCCcchHHHHHHh
Q 008605 345 SPRVVILAPTAELASQVLSNCRSLSKC-G------------------------------VPFRSMVVTGGFRQKTQLENL 393 (560)
Q Consensus 345 ~~~aLil~PtreLa~Qi~~~l~~l~~~-~------------------------------~~i~v~~l~gg~~~~~~~~~l 393 (560)
+..+||.+|++.-+..++..+...... . ....+..++|+....++....
T Consensus 252 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~ 331 (715)
T 2va8_A 252 NGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIE 331 (715)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHH
Confidence 457999999999999998888764321 0 012478899998876554333
Q ss_pred c----CCCcEEEECHHHHHHHHHhccccCCCccEEEE
Q 008605 394 Q----EGVDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (560)
Q Consensus 394 ~----~~~~IlV~TP~~L~~ll~~~~~~l~~l~~LVi 426 (560)
. ....|||+|. .+ ...+++..+.+||-
T Consensus 332 ~~f~~g~~~vlvaT~-----~l-~~Gidip~~~~VI~ 362 (715)
T 2va8_A 332 EGFRQRKIKVIVATP-----TL-AAGVNLPARTVIIG 362 (715)
T ss_dssp HHHHTTCSCEEEECG-----GG-GGSSCCCBSEEEEC
T ss_pred HHHHcCCCeEEEECh-----HH-hcccCCCceEEEEe
Confidence 2 4578999994 22 33567888877553
No 419
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=25.44 E-value=27 Score=31.38 Aligned_cols=15 Identities=20% Similarity=0.328 Sum_probs=12.9
Q ss_pred cEEEEcCCCCcchhh
Q 008605 307 SCILADQSGSGKTLA 321 (560)
Q Consensus 307 dvlv~apTGSGKTla 321 (560)
.+++.++.|||||..
T Consensus 2 ~I~i~G~~GsGKsT~ 16 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTI 16 (205)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCccCHHHH
Confidence 478899999999975
No 420
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=25.40 E-value=27 Score=32.92 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCCcchhhc
Q 008605 305 GKSCILADQSGSGKTLAY 322 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~ 322 (560)
+.-+++.++.|||||...
T Consensus 27 ~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 467889999999999753
No 421
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=25.36 E-value=26 Score=32.38 Aligned_cols=16 Identities=31% Similarity=0.453 Sum_probs=13.1
Q ss_pred cEEEEcCCCCcchhhc
Q 008605 307 SCILADQSGSGKTLAY 322 (560)
Q Consensus 307 dvlv~apTGSGKTla~ 322 (560)
-.++.+|+|+|||..+
T Consensus 25 ~~~I~G~NgsGKStil 40 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEEcCCCCCHHHHH
Confidence 3578899999999763
No 422
>2i9o_A MHB8A peptide; beta-hairpin, alpha-helix, de novo protein; NMR {Synthetic}
Probab=25.27 E-value=28 Score=22.50 Aligned_cols=10 Identities=70% Similarity=1.484 Sum_probs=6.0
Q ss_pred cCCCCCCCCC
Q 008605 62 SGGDGGGGGY 71 (560)
Q Consensus 62 ~~~~~~~~~~ 71 (560)
+||+|+|+|.
T Consensus 12 eggggggggs 21 (37)
T 2i9o_A 12 EGGGGGGGGS 21 (37)
T ss_dssp CCSCCCCSCS
T ss_pred ecCCCCCcch
Confidence 5666666664
No 423
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=25.22 E-value=61 Score=33.98 Aligned_cols=78 Identities=21% Similarity=0.257 Sum_probs=36.2
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEE--------eCCcchHHH---HHHhcC--CCcEEEECHHHHHHH
Q 008605 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV--------TGGFRQKTQ---LENLQE--GVDVLIATPGRFMFL 410 (560)
Q Consensus 344 ~~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l--------~gg~~~~~~---~~~l~~--~~~IlV~TP~~L~~l 410 (560)
.+.++||.++++..+..+.+.++..... ..+++..+ +|+....++ ...+.. ..+|||+|- .
T Consensus 389 ~~~k~lVF~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~-----~ 462 (556)
T 4a2p_A 389 PQTRTLLFAKTRALVSALKKCMEENPIL-NYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS-----V 462 (556)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHTTCSGG-GSCCEEC------------------------------CCEEEEEC------
T ss_pred CCceEEEEEccHHHHHHHHHHHHhCCCc-ceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcC-----c
Confidence 3568999999999999999998765221 12333333 334443333 223333 378999993 2
Q ss_pred HHhccccCCCccEEEEcc
Q 008605 411 IKEGILQLINLRCAILDE 428 (560)
Q Consensus 411 l~~~~~~l~~l~~LViDE 428 (560)
+ ...+++..+++||.=+
T Consensus 463 ~-~~GiDip~v~~VI~~d 479 (556)
T 4a2p_A 463 A-DEGIDIVQCNLVVLYE 479 (556)
T ss_dssp -----------CEEEEET
T ss_pred h-hcCCCchhCCEEEEeC
Confidence 2 2356788888887633
No 424
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=25.21 E-value=29 Score=32.11 Aligned_cols=18 Identities=33% Similarity=0.407 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCCcchhhc
Q 008605 305 GKSCILADQSGSGKTLAY 322 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~ 322 (560)
+..+++.++.|||||...
T Consensus 5 ~~~I~l~G~~GsGKsT~a 22 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQC 22 (217)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456889999999999753
No 425
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=25.14 E-value=61 Score=37.97 Aligned_cols=73 Identities=26% Similarity=0.279 Sum_probs=48.9
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhc-CCCcEEEEC---HHHHHHHHHhccccCCC
Q 008605 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ-EGVDVLIAT---PGRFMFLIKEGILQLIN 420 (560)
Q Consensus 345 ~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~-~~~~IlV~T---P~~L~~ll~~~~~~l~~ 420 (560)
+.++||.|+++.-+..+++.++.. +.+..++|+.. ...+.+. ...+||||| -+ .+ ...+++.+
T Consensus 275 ~~~~LVF~~t~~~a~~l~~~L~~~------~~v~~lhg~~~--~~l~~F~~G~~~VLVaTas~Td----v~-~rGIDip~ 341 (1054)
T 1gku_B 275 GTGGIIYARTGEEAEEIYESLKNK------FRIGIVTATKK--GDYEKFVEGEIDHLIGTAHYYG----TL-VRGLDLPE 341 (1054)
T ss_dssp CSCEEEEESSHHHHHHHHHTTTTS------SCEEECTTSSS--HHHHHHHHTSCSEEEEECC-----------CCSCCTT
T ss_pred CCCEEEEEcCHHHHHHHHHHHhhc------cCeeEEeccHH--HHHHHHHcCCCcEEEEecCCCC----ee-EeccccCC
Confidence 456999999999988888776543 67888888764 2233333 457999993 22 22 33678889
Q ss_pred c-cEEEEcccc
Q 008605 421 L-RCAILDEVD 430 (560)
Q Consensus 421 l-~~LViDEah 430 (560)
| ++||.=.+-
T Consensus 342 VI~~VI~~~~P 352 (1054)
T 1gku_B 342 RIRFAVFVGCP 352 (1054)
T ss_dssp TCCEEEEESCC
T ss_pred cccEEEEeCCC
Confidence 5 888876555
No 426
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=24.76 E-value=1.9e+02 Score=33.03 Aligned_cols=52 Identities=13% Similarity=0.043 Sum_probs=37.1
Q ss_pred EEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHhc--CCCcEEEEC
Q 008605 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ--EGVDVLIAT 403 (560)
Q Consensus 347 ~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~~l~--~~~~IlV~T 403 (560)
.+||.|.|++-+..+...+++. ++.+.+++|+....+...... ....|+|+|
T Consensus 434 pvLVft~s~~~se~Ls~~L~~~-----gi~~~vLhg~~~~rEr~ii~~ag~~g~VlIAT 487 (844)
T 1tf5_A 434 PVLVGTVAVETSELISKLLKNK-----GIPHQVLNAKNHEREAQIIEEAGQKGAVTIAT 487 (844)
T ss_dssp CEEEEESCHHHHHHHHHHHHTT-----TCCCEEECSSCHHHHHHHHTTTTSTTCEEEEE
T ss_pred cEEEEECCHHHHHHHHHHHHHC-----CCCEEEeeCCccHHHHHHHHHcCCCCeEEEeC
Confidence 4999999999999998888754 467788888865444322222 225799998
No 427
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=24.70 E-value=33 Score=32.63 Aligned_cols=18 Identities=33% Similarity=0.470 Sum_probs=15.3
Q ss_pred cCCcEEEEcCCCCcchhh
Q 008605 304 EGKSCILADQSGSGKTLA 321 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla 321 (560)
.|.-+.+.+|+|||||..
T Consensus 30 ~Ge~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSL 47 (237)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567788999999999964
No 428
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=24.59 E-value=29 Score=31.96 Aligned_cols=16 Identities=25% Similarity=0.181 Sum_probs=13.5
Q ss_pred cEEEEcCCCCcchhhc
Q 008605 307 SCILADQSGSGKTLAY 322 (560)
Q Consensus 307 dvlv~apTGSGKTla~ 322 (560)
.+++.++.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999753
No 429
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=24.58 E-value=63 Score=31.99 Aligned_cols=37 Identities=16% Similarity=0.108 Sum_probs=21.8
Q ss_pred CccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEec
Q 008605 420 NLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTA 460 (560)
Q Consensus 420 ~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSA 460 (560)
..+++|++..|.+- . . ..+..+++.+.+...++..|-
T Consensus 151 ~ad~ill~k~dl~d-e-~--~~l~~~l~~l~~~~~ii~~sh 187 (318)
T 1nij_A 151 YADRILLTKTDVAG-E-A--EKLHERLARINARAPVYTVTH 187 (318)
T ss_dssp TCSEEEEECTTTCS-C-T--HHHHHHHHHHCSSSCEEECCS
T ss_pred hCCEEEEECcccCC-H-H--HHHHHHHHHhCCCCeEEEecc
Confidence 45678889888774 2 2 444555544445555555443
No 430
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=24.51 E-value=29 Score=30.86 Aligned_cols=16 Identities=31% Similarity=0.295 Sum_probs=13.2
Q ss_pred cEEEEcCCCCcchhhc
Q 008605 307 SCILADQSGSGKTLAY 322 (560)
Q Consensus 307 dvlv~apTGSGKTla~ 322 (560)
-+++.++.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999753
No 431
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=24.51 E-value=71 Score=31.61 Aligned_cols=56 Identities=11% Similarity=-0.025 Sum_probs=35.3
Q ss_pred HHHHHHHHhccccCCCccEEEEccccc-cCCCCChHHHHHHHHhhCCCCCcEEEEeccCC
Q 008605 405 GRFMFLIKEGILQLINLRCAILDEVDI-LFNDEDFEVALQSLISSSPVTAQYLFVTATLP 463 (560)
Q Consensus 405 ~~L~~ll~~~~~~l~~l~~LViDEah~-ll~d~~f~~~l~~Il~~~~~~~Q~IllSATlp 463 (560)
..+.+.+....+ +..-+++||||+|. +. ......+...++..+.+..+|+.+.++.
T Consensus 62 ~~l~~~~~~~pl-f~~~kvvii~~~~~kl~--~~~~~aLl~~le~p~~~~~~il~~~~~~ 118 (343)
T 1jr3_D 62 NAIFSLCQAMSL-FASRQTLLLLLPENGPN--AAINEQLLTLTGLLHDDLLLIVRGNKLS 118 (343)
T ss_dssp HHHHHHHHHHHH-CCSCEEEEEECCSSCCC--TTHHHHHHHHHTTCBTTEEEEEEESCCC
T ss_pred HHHHHHhcCcCC-ccCCeEEEEECCCCCCC--hHHHHHHHHHHhcCCCCeEEEEEcCCCC
Confidence 344444433222 45678999999998 75 4555566677776666776766665543
No 432
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=24.41 E-value=33 Score=32.76 Aligned_cols=19 Identities=21% Similarity=0.204 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCCcchhhc
Q 008605 304 EGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~ 322 (560)
.|.-+.+.+|+|||||...
T Consensus 26 ~g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLC 44 (252)
T ss_dssp TSCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3566889999999999753
No 433
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=24.23 E-value=22 Score=33.91 Aligned_cols=17 Identities=41% Similarity=0.509 Sum_probs=14.0
Q ss_pred CcEEEEcCCCCcchhhc
Q 008605 306 KSCILADQSGSGKTLAY 322 (560)
Q Consensus 306 ~dvlv~apTGSGKTla~ 322 (560)
..+++++++|||||...
T Consensus 33 ~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIH 49 (253)
T ss_dssp EEEEEESCGGGTTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35789999999999753
No 434
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=24.22 E-value=29 Score=31.21 Aligned_cols=16 Identities=25% Similarity=0.246 Sum_probs=13.3
Q ss_pred cEEEEcCCCCcchhhc
Q 008605 307 SCILADQSGSGKTLAY 322 (560)
Q Consensus 307 dvlv~apTGSGKTla~ 322 (560)
.+.+.+++|||||...
T Consensus 10 ~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999999754
No 435
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=24.04 E-value=62 Score=30.90 Aligned_cols=20 Identities=40% Similarity=0.622 Sum_probs=16.0
Q ss_pred CC-cEEEEcCCCCcchhhcHH
Q 008605 305 GK-SCILADQSGSGKTLAYLL 324 (560)
Q Consensus 305 g~-dvlv~apTGSGKTla~ll 324 (560)
|+ ++++.++.|+|||...+-
T Consensus 5 g~l~I~~~~kgGvGKTt~a~~ 25 (228)
T 2r8r_A 5 GRLKVFLGAAPGVGKTYAMLQ 25 (228)
T ss_dssp CCEEEEEESSTTSSHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHH
Confidence 44 588999999999987543
No 436
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=24.03 E-value=30 Score=30.94 Aligned_cols=15 Identities=27% Similarity=0.377 Sum_probs=12.8
Q ss_pred EEEEcCCCCcchhhc
Q 008605 308 CILADQSGSGKTLAY 322 (560)
Q Consensus 308 vlv~apTGSGKTla~ 322 (560)
+++.++.|||||...
T Consensus 3 I~l~G~~GsGKsT~~ 17 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQI 17 (197)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999764
No 437
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=23.82 E-value=28 Score=33.33 Aligned_cols=17 Identities=29% Similarity=0.282 Sum_probs=14.2
Q ss_pred CcEEEEcCCCCcchhhc
Q 008605 306 KSCILADQSGSGKTLAY 322 (560)
Q Consensus 306 ~dvlv~apTGSGKTla~ 322 (560)
.-++++|+.|||||...
T Consensus 5 ~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFS 21 (260)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 45789999999999754
No 438
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=23.77 E-value=31 Score=32.45 Aligned_cols=31 Identities=10% Similarity=-0.097 Sum_probs=20.4
Q ss_pred CCCccEEEEccccccCCCCChHHHHHHHHhhC
Q 008605 418 LINLRCAILDEVDILFNDEDFEVALQSLISSS 449 (560)
Q Consensus 418 l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~ 449 (560)
+.+-+++++||.-.-+ |......+..++..+
T Consensus 156 ~~~p~lllLDEPt~~L-D~~~~~~~~~~l~~l 186 (224)
T 2pcj_A 156 ANEPILLFADEPTGNL-DSANTKRVMDIFLKI 186 (224)
T ss_dssp TTCCSEEEEESTTTTC-CHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEeCCCCCC-CHHHHHHHHHHHHHH
Confidence 4556789999988777 555555555555444
No 439
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=23.64 E-value=32 Score=32.66 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=15.2
Q ss_pred cCCcEEEEcCCCCcchhhc
Q 008605 304 EGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~ 322 (560)
.+..+++.++.|||||...
T Consensus 28 ~~~~I~l~G~~GsGKsT~a 46 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQS 46 (243)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3456899999999999753
No 440
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=23.54 E-value=38 Score=31.78 Aligned_cols=18 Identities=28% Similarity=0.398 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCCcchhh
Q 008605 304 EGKSCILADQSGSGKTLA 321 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla 321 (560)
.|.-+.+.+|+|+|||..
T Consensus 34 ~Ge~~~iiG~NGsGKSTL 51 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTL 51 (214)
T ss_dssp TTCCEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577788999999999974
No 441
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=23.39 E-value=43 Score=37.41 Aligned_cols=16 Identities=38% Similarity=0.486 Sum_probs=14.2
Q ss_pred cEEEEcCCCCcchhhc
Q 008605 307 SCILADQSGSGKTLAY 322 (560)
Q Consensus 307 dvlv~apTGSGKTla~ 322 (560)
++++.+|+|+|||...
T Consensus 490 ~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVT 505 (758)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 6999999999999764
No 442
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=23.20 E-value=30 Score=31.58 Aligned_cols=16 Identities=31% Similarity=0.106 Sum_probs=13.2
Q ss_pred cEEEEcCCCCcchhhc
Q 008605 307 SCILADQSGSGKTLAY 322 (560)
Q Consensus 307 dvlv~apTGSGKTla~ 322 (560)
-+.+.+++|||||...
T Consensus 24 ~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLA 39 (201)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999753
No 443
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=23.15 E-value=30 Score=45.36 Aligned_cols=20 Identities=40% Similarity=0.632 Sum_probs=17.2
Q ss_pred HHcCCcEEEEcCCCCcchhh
Q 008605 302 VVEGKSCILADQSGSGKTLA 321 (560)
Q Consensus 302 il~g~dvlv~apTGSGKTla 321 (560)
+..++.+++++|||+|||..
T Consensus 1301 l~~~~pvLL~GptGtGKT~l 1320 (3245)
T 3vkg_A 1301 LSEHRPLILCGPPGSGKTMT 1320 (3245)
T ss_dssp HHTTCCCEEESSTTSSHHHH
T ss_pred HHCCCcEEEECCCCCCHHHH
Confidence 45788999999999999953
No 444
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=23.15 E-value=36 Score=32.85 Aligned_cols=39 Identities=21% Similarity=0.269 Sum_probs=24.4
Q ss_pred CccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEec
Q 008605 420 NLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTA 460 (560)
Q Consensus 420 ~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSA 460 (560)
+-+++++||.-.-+ |......+..++..+... .+++++.
T Consensus 173 ~p~lllLDEPts~L-D~~~~~~i~~~l~~l~~~-~tviivt 211 (260)
T 2ghi_A 173 DPKIVIFDEATSSL-DSKTEYLFQKAVEDLRKN-RTLIIIA 211 (260)
T ss_dssp CCSEEEEECCCCTT-CHHHHHHHHHHHHHHTTT-SEEEEEC
T ss_pred CCCEEEEECccccC-CHHHHHHHHHHHHHhcCC-CEEEEEc
Confidence 35689999998877 655566666655554433 3455444
No 445
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=23.09 E-value=37 Score=32.54 Aligned_cols=42 Identities=17% Similarity=0.146 Sum_probs=25.9
Q ss_pred CCCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEecc
Q 008605 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTAT 461 (560)
Q Consensus 418 l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSAT 461 (560)
+.+-+++++||.-.-+ |......+..++..+..+ .+++++..
T Consensus 161 ~~~p~lllLDEPts~L-D~~~~~~i~~~l~~~~~g-~tviivtH 202 (247)
T 2ff7_A 161 VNNPKILIFDEATSAL-DYESEHVIMRNMHKICKG-RTVIIIAH 202 (247)
T ss_dssp TTCCSEEEECCCCSCC-CHHHHHHHHHHHHHHHTT-SEEEEECS
T ss_pred hcCCCEEEEeCCcccC-CHHHHHHHHHHHHHHcCC-CEEEEEeC
Confidence 4456789999998888 665555565555544333 34544443
No 446
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=23.09 E-value=29 Score=37.13 Aligned_cols=50 Identities=28% Similarity=0.349 Sum_probs=28.7
Q ss_pred ccccccCCCHHHHHHHHHCC--CCCChHHHHHHHHHH--HcCCcEEEEcCCCCcchhhc
Q 008605 268 KSFKELGCSDYMIESLKRQN--FLRPSQIQAMAFPPV--VEGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 268 ~sF~~l~L~~~ll~~L~~~g--~~~pt~iQ~~aip~i--l~g~dvlv~apTGSGKTla~ 322 (560)
.+|+++.-.++....|.+.- +..+. .+..+ .-.+.+++.+|+|+|||+..
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~-----~~~~lg~~ip~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNPS-----RFHEMGARIPKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCGG-----GTTTTSCCCCSEEEEECSSSSSHHHHH
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhchh-----hhhhccCCCCceEEEECCCCCCHHHHH
Confidence 57888877777666665420 00100 00000 01245999999999999753
No 447
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=23.04 E-value=37 Score=32.06 Aligned_cols=41 Identities=10% Similarity=-0.040 Sum_probs=24.1
Q ss_pred CCCccEEEEccccccCCCCChHHHHHHH-HhhCCCCCcEEEEec
Q 008605 418 LINLRCAILDEVDILFNDEDFEVALQSL-ISSSPVTAQYLFVTA 460 (560)
Q Consensus 418 l~~l~~LViDEah~ll~d~~f~~~l~~I-l~~~~~~~Q~IllSA 460 (560)
+.+-+++++||.-.-+ |......+..+ +.....+ .+++++.
T Consensus 146 ~~~p~lllLDEPts~L-D~~~~~~i~~~l~~~~~~~-~tvi~vt 187 (229)
T 2pze_A 146 YKDADLYLLDSPFGYL-DVLTEKEIFESCVCKLMAN-KTRILVT 187 (229)
T ss_dssp HSCCSEEEEESTTTTS-CHHHHHHHHHHCCCCCTTT-SEEEEEC
T ss_pred hcCCCEEEEECcccCC-CHHHHHHHHHHHHHHhhCC-CEEEEEc
Confidence 3456789999998887 65555555543 3333333 3455443
No 448
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=22.96 E-value=26 Score=39.93 Aligned_cols=19 Identities=32% Similarity=0.461 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCCcchhhc
Q 008605 304 EGKSCILADQSGSGKTLAY 322 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~ 322 (560)
.++.+++++|+|+|||...
T Consensus 237 ~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCCEEEECSCTTSSHHHHH
T ss_pred CCCeEEEECcCCCCHHHHH
Confidence 4578999999999999753
No 449
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=22.94 E-value=23 Score=32.06 Aligned_cols=16 Identities=31% Similarity=0.241 Sum_probs=12.9
Q ss_pred cEEEEcCCCCcchhhc
Q 008605 307 SCILADQSGSGKTLAY 322 (560)
Q Consensus 307 dvlv~apTGSGKTla~ 322 (560)
-+.+++++|||||...
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4668899999999753
No 450
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=22.87 E-value=1.2e+02 Score=32.57 Aligned_cols=80 Identities=18% Similarity=0.170 Sum_probs=51.3
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHhhhcC---CCCceEEEEeCCcch--HHHHHHhcCC-Cc---EEEECHHHHHHHHHhc
Q 008605 344 GSPRVVILAPTAELASQVLSNCRSLSKC---GVPFRSMVVTGGFRQ--KTQLENLQEG-VD---VLIATPGRFMFLIKEG 414 (560)
Q Consensus 344 ~~~~aLil~PtreLa~Qi~~~l~~l~~~---~~~i~v~~l~gg~~~--~~~~~~l~~~-~~---IlV~TP~~L~~ll~~~ 414 (560)
.+.++||.|+++.-|..+++.+.++... ...-.+..++|.... ......+.++ .+ |+|+|- ++ ..
T Consensus 438 ~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~~~~~~~~ilvtt~-----~l-~~ 511 (590)
T 3h1t_A 438 RFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTSQ-----LL-TT 511 (590)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEESS-----TT-TT
T ss_pred CCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhCCCCCCCEEEEECC-----hh-hc
Confidence 4578999999999999999999876421 112235666776643 2223344332 23 777762 22 23
Q ss_pred cccCCCccEEEEccc
Q 008605 415 ILQLINLRCAILDEV 429 (560)
Q Consensus 415 ~~~l~~l~~LViDEa 429 (560)
.+++..+.+||++..
T Consensus 512 GiDip~v~~Vi~~~~ 526 (590)
T 3h1t_A 512 GVDAPTCKNVVLARV 526 (590)
T ss_dssp TCCCTTEEEEEEESC
T ss_pred CccchheeEEEEEec
Confidence 578889999998665
No 451
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=22.62 E-value=34 Score=32.91 Aligned_cols=31 Identities=10% Similarity=0.061 Sum_probs=20.6
Q ss_pred CCCccEEEEccccccCCCCChHHHHHHHHhhC
Q 008605 418 LINLRCAILDEVDILFNDEDFEVALQSLISSS 449 (560)
Q Consensus 418 l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~ 449 (560)
+.+-+++++||.-.-+ |......+..++..+
T Consensus 169 ~~~p~lllLDEPts~L-D~~~~~~l~~~l~~l 199 (257)
T 1g6h_A 169 MTNPKMIVMDEPIAGV-APGLAHDIFNHVLEL 199 (257)
T ss_dssp HTCCSEEEEESTTTTC-CHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEeCCccCC-CHHHHHHHHHHHHHH
Confidence 3456789999988777 655555555555544
No 452
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=22.36 E-value=46 Score=32.43 Aligned_cols=18 Identities=17% Similarity=0.063 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCCcchhh
Q 008605 304 EGKSCILADQSGSGKTLA 321 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla 321 (560)
.++.++|.++.|+|||..
T Consensus 30 ~~~~v~i~G~~G~GKT~L 47 (350)
T 2qen_A 30 NYPLTLLLGIRRVGKSSL 47 (350)
T ss_dssp HCSEEEEECCTTSSHHHH
T ss_pred cCCeEEEECCCcCCHHHH
Confidence 367899999999999964
No 453
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=22.22 E-value=31 Score=34.54 Aligned_cols=15 Identities=33% Similarity=0.523 Sum_probs=12.8
Q ss_pred EEEEcCCCCcchhhc
Q 008605 308 CILADQSGSGKTLAY 322 (560)
Q Consensus 308 vlv~apTGSGKTla~ 322 (560)
.++++|+|+|||..+
T Consensus 26 ~~i~G~NGsGKS~ll 40 (339)
T 3qkt_A 26 NLIIGQNGSGKSSLL 40 (339)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 468999999999864
No 454
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=22.12 E-value=42 Score=33.31 Aligned_cols=53 Identities=11% Similarity=0.189 Sum_probs=27.8
Q ss_pred ccEEEEccccccCCCCChHHHHHH----HHhhCCCCCc--EEEEeccCCHHHHHHHHHh
Q 008605 421 LRCAILDEVDILFNDEDFEVALQS----LISSSPVTAQ--YLFVTATLPVEIYNKLVEV 473 (560)
Q Consensus 421 l~~LViDEah~ll~d~~f~~~l~~----Il~~~~~~~Q--~IllSATlp~~v~~~l~~~ 473 (560)
.+.+++|-+...-....+...+.. |-+.+...+. ++.+.|+.-..+.+.+..+
T Consensus 185 ~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~~~~~~~ 243 (304)
T 1rj9_A 185 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKF 243 (304)
T ss_dssp CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHH
T ss_pred CCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHHHHHHHH
Confidence 456788988765322222222322 2233443444 6677888766666655443
No 455
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=22.09 E-value=38 Score=33.13 Aligned_cols=44 Identities=16% Similarity=0.146 Sum_probs=24.9
Q ss_pred CCCccEEEEccccccCCCCChHHHHHHHHhhCC-C-CCcEEEEeccC
Q 008605 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSP-V-TAQYLFVTATL 462 (560)
Q Consensus 418 l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~-~-~~Q~IllSATl 462 (560)
+.+-++|++||.=.-+ |......+..++..+. . +.-+|+.|--+
T Consensus 159 ~~~P~lLlLDEPts~L-D~~~~~~i~~~l~~l~~~~g~tvi~vtHdl 204 (275)
T 3gfo_A 159 VMEPKVLILDEPTAGL-DPMGVSEIMKLLVEMQKELGITIIIATHDI 204 (275)
T ss_dssp TTCCSEEEEECTTTTC-CHHHHHHHHHHHHHHHHHHCCEEEEEESCC
T ss_pred HcCCCEEEEECccccC-CHHHHHHHHHHHHHHHhhCCCEEEEEecCH
Confidence 4456789999988777 5555555555554432 1 33344444433
No 456
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=22.08 E-value=69 Score=27.37 Aligned_cols=37 Identities=14% Similarity=0.083 Sum_probs=22.9
Q ss_pred cEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEec
Q 008605 422 RCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTA 460 (560)
Q Consensus 422 ~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSA 460 (560)
..|+|||+|.+. ......+..++...+.+.++|+.|.
T Consensus 78 g~l~ldei~~l~--~~~q~~Ll~~l~~~~~~~~~I~~t~ 114 (145)
T 3n70_A 78 GTLVLSHPEHLT--REQQYHLVQLQSQEHRPFRLIGIGD 114 (145)
T ss_dssp SCEEEECGGGSC--HHHHHHHHHHHHSSSCSSCEEEEES
T ss_pred cEEEEcChHHCC--HHHHHHHHHHHhhcCCCEEEEEECC
Confidence 469999999986 3334444444555555666665444
No 457
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=21.96 E-value=33 Score=31.52 Aligned_cols=16 Identities=31% Similarity=0.335 Sum_probs=13.4
Q ss_pred cEEEEcCCCCcchhhc
Q 008605 307 SCILADQSGSGKTLAY 322 (560)
Q Consensus 307 dvlv~apTGSGKTla~ 322 (560)
-+.+.++.|||||...
T Consensus 6 ~I~i~G~~GSGKST~~ 21 (218)
T 1vht_A 6 IVALTGGIGSGKSTVA 21 (218)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999999753
No 458
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=21.59 E-value=37 Score=32.86 Aligned_cols=31 Identities=10% Similarity=0.174 Sum_probs=21.2
Q ss_pred CCCccEEEEccccccCCCCChHHHHHHHHhhC
Q 008605 418 LINLRCAILDEVDILFNDEDFEVALQSLISSS 449 (560)
Q Consensus 418 l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~ 449 (560)
+.+-++|++||.-.-+ |......+..++..+
T Consensus 169 ~~~p~lllLDEPts~L-D~~~~~~~~~~l~~l 199 (262)
T 1b0u_A 169 AMEPDVLLFDEPTSAL-DPELVGEVLRIMQQL 199 (262)
T ss_dssp HTCCSEEEEESTTTTS-CHHHHHHHHHHHHHH
T ss_pred hcCCCEEEEeCCCccC-CHHHHHHHHHHHHHH
Confidence 4456789999998887 655555555555544
No 459
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=21.51 E-value=35 Score=32.52 Aligned_cols=18 Identities=28% Similarity=0.353 Sum_probs=15.2
Q ss_pred cCCcEEEEcCCCCcchhh
Q 008605 304 EGKSCILADQSGSGKTLA 321 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla 321 (560)
.|.-+.+.+|+|||||..
T Consensus 27 ~Ge~~~i~G~nGsGKSTL 44 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTI 44 (243)
T ss_dssp TTEEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 466788999999999974
No 460
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=21.40 E-value=32 Score=34.16 Aligned_cols=18 Identities=22% Similarity=0.370 Sum_probs=14.3
Q ss_pred CCcEEEEcCCCCcchhhc
Q 008605 305 GKSCILADQSGSGKTLAY 322 (560)
Q Consensus 305 g~dvlv~apTGSGKTla~ 322 (560)
|.-+.+.+|+|+|||...
T Consensus 100 g~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp CEEEEEECCTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 345678999999999753
No 461
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=21.40 E-value=34 Score=31.80 Aligned_cols=16 Identities=25% Similarity=0.333 Sum_probs=13.4
Q ss_pred cEEEEcCCCCcchhhc
Q 008605 307 SCILADQSGSGKTLAY 322 (560)
Q Consensus 307 dvlv~apTGSGKTla~ 322 (560)
.+++.++.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQG 17 (223)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999753
No 462
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=21.25 E-value=41 Score=32.61 Aligned_cols=29 Identities=21% Similarity=0.131 Sum_probs=20.4
Q ss_pred CccEEEEccccccCCCCChHHHHHHHHhhC
Q 008605 420 NLRCAILDEVDILFNDEDFEVALQSLISSS 449 (560)
Q Consensus 420 ~l~~LViDEah~ll~d~~f~~~l~~Il~~~ 449 (560)
+-++|++||-=.-+ |......+..+++.+
T Consensus 165 ~p~lLllDEPts~L-D~~~~~~i~~~l~~l 193 (266)
T 4g1u_C 165 TPRWLFLDEPTSAL-DLYHQQHTLRLLRQL 193 (266)
T ss_dssp CCEEEEECCCCSSC-CHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCccccC-CHHHHHHHHHHHHHH
Confidence 66789999998777 655555555555554
No 463
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=21.24 E-value=42 Score=31.88 Aligned_cols=41 Identities=12% Similarity=0.126 Sum_probs=25.7
Q ss_pred CCCccEEEEccccccCCCCChHHHHHHHHhhCC-CCCcEEEEe
Q 008605 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSP-VTAQYLFVT 459 (560)
Q Consensus 418 l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~-~~~Q~IllS 459 (560)
+.+-+++++||.-.-+ |......+..++..+. .+.-+|+.|
T Consensus 155 ~~~p~lllLDEPts~L-D~~~~~~l~~~l~~~~~~g~tvi~vt 196 (240)
T 1ji0_A 155 MSRPKLLMMDEPSLGL-APILVSEVFEVIQKINQEGTTILLVE 196 (240)
T ss_dssp TTCCSEEEEECTTTTC-CHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HcCCCEEEEcCCcccC-CHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 4556889999998888 6665555655555442 233344443
No 464
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=21.23 E-value=34 Score=39.04 Aligned_cols=16 Identities=31% Similarity=0.378 Sum_probs=14.1
Q ss_pred cEEEEcCCCCcchhhc
Q 008605 307 SCILADQSGSGKTLAY 322 (560)
Q Consensus 307 dvlv~apTGSGKTla~ 322 (560)
.+++.+|||+|||...
T Consensus 590 ~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEBSCSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6899999999999754
No 465
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=21.08 E-value=57 Score=34.78 Aligned_cols=28 Identities=29% Similarity=0.419 Sum_probs=20.6
Q ss_pred cCCcEEEEcCCCCcchhhcHHHHHHHHH
Q 008605 304 EGKSCILADQSGSGKTLAYLLPVIQRLR 331 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla~llpil~~l~ 331 (560)
.|.-+++.+|+|+|||.....-++.-+.
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~ 65 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGII 65 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 5678999999999999865554344443
No 466
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=20.98 E-value=43 Score=32.05 Aligned_cols=40 Identities=20% Similarity=0.086 Sum_probs=24.5
Q ss_pred CccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEec
Q 008605 420 NLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTA 460 (560)
Q Consensus 420 ~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSA 460 (560)
+-++|++||.-.-+ |......+..++..+.....+++++.
T Consensus 161 ~p~lllLDEPts~L-D~~~~~~l~~~l~~l~~~g~tvi~vt 200 (250)
T 2d2e_A 161 EPTYAVLDETDSGL-DIDALKVVARGVNAMRGPNFGALVIT 200 (250)
T ss_dssp CCSEEEEECGGGTT-CHHHHHHHHHHHHHHCSTTCEEEEEC
T ss_pred CCCEEEEeCCCcCC-CHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 35689999998888 66666666666655433223444433
No 467
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=20.90 E-value=25 Score=37.34 Aligned_cols=73 Identities=11% Similarity=0.207 Sum_probs=44.4
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHH---HHHhc-CCCcEEEECHHHHHHHHHhccccCCC
Q 008605 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ---LENLQ-EGVDVLIATPGRFMFLIKEGILQLIN 420 (560)
Q Consensus 345 ~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~---~~~l~-~~~~IlV~TP~~L~~ll~~~~~~l~~ 420 (560)
+.++||.|+++.-+..++..+.+. ++.+..++|+.....+ .+.+. ...+|||+|- ++. ..+++.+
T Consensus 357 ~~~~LVF~~s~~~a~~l~~~L~~~-----~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~-----~l~-~GiDip~ 425 (508)
T 3fho_A 357 IGQSIIFCKKKDTAEEIARRMTAD-----GHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTN-----VIA-RGIDVSQ 425 (508)
T ss_dssp CCCEEEBCSSTTTTTHHHHHHTTT-----TCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----------CCCTT
T ss_pred CCcEEEEECCHHHHHHHHHHHHhC-----CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCC-----hhh-cCCCccC
Confidence 457999999999999988888653 4566777777654322 22232 3478999994 333 3567888
Q ss_pred ccEEEEcc
Q 008605 421 LRCAILDE 428 (560)
Q Consensus 421 l~~LViDE 428 (560)
+++||.-.
T Consensus 426 v~~VI~~~ 433 (508)
T 3fho_A 426 VNLVVNYD 433 (508)
T ss_dssp CCEEEC--
T ss_pred CCEEEEEC
Confidence 98888533
No 468
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=20.82 E-value=28 Score=24.97 Aligned_cols=8 Identities=88% Similarity=1.925 Sum_probs=3.2
Q ss_pred CCCCCCCC
Q 008605 63 GGDGGGGG 70 (560)
Q Consensus 63 ~~~~~~~~ 70 (560)
||||||+|
T Consensus 28 gggggggg 35 (62)
T 2i7u_A 28 GGGGGGGG 35 (62)
T ss_dssp CSSCSSSC
T ss_pred cCCCCchH
Confidence 34444433
No 469
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=20.47 E-value=2.3e+02 Score=27.23 Aligned_cols=76 Identities=9% Similarity=0.065 Sum_probs=49.1
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHH---HhcC--CCc-EEEECHHHHHHHHHhccccC
Q 008605 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLE---NLQE--GVD-VLIATPGRFMFLIKEGILQL 418 (560)
Q Consensus 345 ~~~aLil~PtreLa~Qi~~~l~~l~~~~~~i~v~~l~gg~~~~~~~~---~l~~--~~~-IlV~TP~~L~~ll~~~~~~l 418 (560)
+.++||.+.++..+..+...+.... ++.+..+.|+.+...... .+.. .+. +|++|- .. ...+++
T Consensus 112 ~~kvlIFs~~~~~~~~l~~~L~~~~----g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~-~~-----g~Glnl 181 (271)
T 1z5z_A 112 GDKIAIFTQFVDMGKIIRNIIEKEL----NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVK-AG-----GFGINL 181 (271)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHHHH----CSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECC-TT-----CCCCCC
T ss_pred CCeEEEEeccHHHHHHHHHHHHHhc----CCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehh-hh-----cCCcCc
Confidence 4579999999999888888887632 345667888887544433 3333 355 555652 21 235677
Q ss_pred CCccEEEEcccc
Q 008605 419 INLRCAILDEVD 430 (560)
Q Consensus 419 ~~l~~LViDEah 430 (560)
..+.++|+=+..
T Consensus 182 ~~a~~VI~~d~~ 193 (271)
T 1z5z_A 182 TSANRVIHFDRW 193 (271)
T ss_dssp TTCSEEEECSCC
T ss_pred ccCCEEEEECCC
Confidence 888888764443
No 470
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=20.41 E-value=36 Score=32.95 Aligned_cols=16 Identities=25% Similarity=0.187 Sum_probs=13.5
Q ss_pred cEEEEcCCCCcchhhc
Q 008605 307 SCILADQSGSGKTLAY 322 (560)
Q Consensus 307 dvlv~apTGSGKTla~ 322 (560)
-+++++++|||||...
T Consensus 4 ~I~l~G~~GsGKST~a 19 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWA 19 (301)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999999754
No 471
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=20.36 E-value=44 Score=32.35 Aligned_cols=40 Identities=20% Similarity=0.140 Sum_probs=26.4
Q ss_pred CccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEec
Q 008605 420 NLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTA 460 (560)
Q Consensus 420 ~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSA 460 (560)
+-++|++||.-.-+ |......+..++..+.....+++++.
T Consensus 182 ~p~lLlLDEPts~L-D~~~~~~l~~~l~~l~~~g~tviivt 221 (267)
T 2zu0_C 182 EPELCILDESDSGL-DIDALKVVADGVNSLRDGKRSFIIVT 221 (267)
T ss_dssp CCSEEEEESTTTTC-CHHHHHHHHHHHHTTCCSSCEEEEEC
T ss_pred CCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 45689999998888 66666677777766643333444443
No 472
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=20.34 E-value=45 Score=32.44 Aligned_cols=42 Identities=21% Similarity=0.338 Sum_probs=28.6
Q ss_pred CCCccEEEEccccccCCCCChHHHHHHHHhhCCC-CCcEEEEec
Q 008605 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPV-TAQYLFVTA 460 (560)
Q Consensus 418 l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~-~~Q~IllSA 460 (560)
+.+-++|++||.-.-+ |......+..++..+.. ...+++++.
T Consensus 172 ~~~p~lllLDEPts~L-D~~~~~~i~~~l~~~~~~~g~tviivt 214 (271)
T 2ixe_A 172 IRKPRLLILDNATSAL-DAGNQLRVQRLLYESPEWASRTVLLIT 214 (271)
T ss_dssp TTCCSEEEEESTTTTC-CHHHHHHHHHHHHHCTTTTTSEEEEEC
T ss_pred hcCCCEEEEECCccCC-CHHHHHHHHHHHHHHHhhcCCEEEEEe
Confidence 4566899999999888 66677777777776643 233454443
No 473
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=20.25 E-value=45 Score=32.02 Aligned_cols=37 Identities=19% Similarity=0.202 Sum_probs=23.5
Q ss_pred EEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEec
Q 008605 423 CAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTA 460 (560)
Q Consensus 423 ~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSA 460 (560)
++++||.-.-+ |......+..++..+.....+++++.
T Consensus 154 lllLDEPts~L-D~~~~~~l~~~l~~l~~~g~tviivt 190 (249)
T 2qi9_C 154 LLLLDEPMNSL-DVAQQSALDKILSALSQQGLAIVMSS 190 (249)
T ss_dssp EEEESSTTTTC-CHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred EEEEECCcccC-CHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 99999998888 66666666666655432233455543
No 474
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=20.24 E-value=33 Score=34.23 Aligned_cols=39 Identities=23% Similarity=0.196 Sum_probs=24.4
Q ss_pred CccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEec
Q 008605 420 NLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTA 460 (560)
Q Consensus 420 ~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSA 460 (560)
+-++||+||.=.-+ |......+..++..+.... ++++.+
T Consensus 208 ~p~iLlLDEPts~L-D~~~~~~i~~~l~~l~~~~-Tvi~it 246 (306)
T 3nh6_A 208 APGIILLDEATSAL-DTSNERAIQASLAKVCANR-TTIVVA 246 (306)
T ss_dssp CCSEEEEECCSSCC-CHHHHHHHHHHHHHHHTTS-EEEEEC
T ss_pred CCCEEEEECCcccC-CHHHHHHHHHHHHHHcCCC-EEEEEE
Confidence 45789999998877 6555555555555443343 555543
No 475
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=20.11 E-value=45 Score=32.22 Aligned_cols=42 Identities=14% Similarity=0.150 Sum_probs=26.3
Q ss_pred CCCccEEEEccccccCCCCChHHHHHHHHhhCCCCCcEEEEec
Q 008605 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTA 460 (560)
Q Consensus 418 l~~l~~LViDEah~ll~d~~f~~~l~~Il~~~~~~~Q~IllSA 460 (560)
+.+-+++++||.-.-+ |......+..++..+.....+++++.
T Consensus 154 ~~~p~lllLDEPts~L-D~~~~~~l~~~l~~l~~~g~tii~vt 195 (266)
T 2yz2_A 154 VHEPDILILDEPLVGL-DREGKTDLLRIVEKWKTLGKTVILIS 195 (266)
T ss_dssp TTCCSEEEEESTTTTC-CHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HcCCCEEEEcCccccC-CHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 4566889999998888 66666666666555422223444443
No 476
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=20.09 E-value=37 Score=30.17 Aligned_cols=18 Identities=28% Similarity=0.327 Sum_probs=14.6
Q ss_pred cCCcEEEEcCCCCcchhh
Q 008605 304 EGKSCILADQSGSGKTLA 321 (560)
Q Consensus 304 ~g~dvlv~apTGSGKTla 321 (560)
.|.-+.+.+|.|+|||..
T Consensus 32 ~Ge~v~L~G~nGaGKTTL 49 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTL 49 (158)
T ss_dssp SCEEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 455677899999999964
Done!