BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008606
(560 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225444784|ref|XP_002278273.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit [Vitis
vinifera]
gi|297738589|emb|CBI27834.3| unnamed protein product [Vitis vinifera]
Length = 622
Score = 872 bits (2254), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/557 (75%), Positives = 475/557 (85%), Gaps = 31/557 (5%)
Query: 1 METIILDCEPIGNPKIFSESELTAQKTIPSNNLPQPVRVNNYSAPNSGTFNLQNSGTFNS 60
METII +CE IGNPK+ +ES TAQK P N + V V N
Sbjct: 94 METIIPECEIIGNPKMNTESHSTAQKEFPGGNRARSVGVTN------------------- 134
Query: 61 QNPGSFSTPNSGTFRAPNAGSIVRSFQPTVQPPYQPPPNFRNHGPILKNEAPARIIPIAA 120
N G+ + SF+P+VQPP+QPPPN+++HG ILKNEAPARIIPIAA
Sbjct: 135 -----------NNLSVQNGGNKMPSFRPSVQPPFQPPPNYKSHGTILKNEAPARIIPIAA 183
Query: 121 LNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEI 180
LNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFY+
Sbjct: 184 LNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYDT 243
Query: 181 IEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISE 240
IEVG+VYLISKGSLKPAQKNFNHLKNEWEIFLEA+S+V+LC +ED SIPKQQFSFR ISE
Sbjct: 244 IEVGKVYLISKGSLKPAQKNFNHLKNEWEIFLEASSSVELCPDEDGSIPKQQFSFRPISE 303
Query: 241 IESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKE 300
IE+ ENNSI+DVIGIVISVNPSVPILRKNGMETQRRI+NLKD SGRS+ELT+WG+FCN+E
Sbjct: 304 IENVENNSILDVIGIVISVNPSVPILRKNGMETQRRIVNLKDGSGRSIELTMWGEFCNRE 363
Query: 301 GQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGK 360
G +LQEM+D G FPVL+VKSGKVNDFSGKS+GTI +TQLFINPDF EA LREWFD GGK
Sbjct: 364 GHQLQEMIDSGSFPVLAVKSGKVNDFSGKSVGTISATQLFINPDFTEACNLREWFDRGGK 423
Query: 361 NAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTAC 420
NAA+ SISR+I G++NEI KTVSQIK+EGLGRS+KPDWVTV+A I+FIK+D+FCY AC
Sbjct: 424 NAASQSISRDIMPAGSRNEIRKTVSQIKDEGLGRSDKPDWVTVKATISFIKTDTFCYAAC 483
Query: 421 PLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGE 479
PLMIGDRQCNKKVT+SGN RWQCDRCNQE ++CDYRYLLQAQ+QD TGLTWVTAFQE+GE
Sbjct: 484 PLMIGDRQCNKKVTRSGNTRWQCDRCNQEFEDCDYRYLLQAQVQDHTGLTWVTAFQEAGE 543
Query: 480 EILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRAD 539
EILGC AKELY+LKYE +DD RFGEIIRSR+ NQ+LFRLKIKEE+YG+EQRVKITV++AD
Sbjct: 544 EILGCSAKELYLLKYEEEDDFRFGEIIRSRLLNQFLFRLKIKEEMYGEEQRVKITVVKAD 603
Query: 540 QVNYSSESRYLLDLISK 556
+VNY+SESR+LLDLISK
Sbjct: 604 KVNYTSESRHLLDLISK 620
>gi|255546005|ref|XP_002514062.1| replication factor A 1, rfa1, putative [Ricinus communis]
gi|223546518|gb|EEF48016.1| replication factor A 1, rfa1, putative [Ricinus communis]
Length = 670
Score = 850 bits (2195), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/578 (74%), Positives = 488/578 (84%), Gaps = 21/578 (3%)
Query: 1 METIILDCEPIGNPKIFSESELTAQKTIPSNNLPQPVRV--NNYSAPNSGT--------F 50
+ETII +CE IGN K ++ + AQK + N Q V NN SA N
Sbjct: 94 LETIIPECEIIGNAKTLTD--MFAQKASQNGNSVQSAGVGYNNSSARNHDNNVQNFQPPL 151
Query: 51 NLQNSG--------TFNSQNPGSFSTPNSGTFRAPNAGSIVRSFQPTVQPPYQPPPNFRN 102
+ N G TF+SQN G+ + A N G+ ++SFQP VQPPY+PPPN+RN
Sbjct: 152 SAHNQGSSMHNFRPTFSSQNHGNNMQNFTSNLSAQNYGNNIQSFQPNVQPPYRPPPNYRN 211
Query: 103 HGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDG 162
HG I+KNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDG
Sbjct: 212 HGAIMKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDG 271
Query: 163 GEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCT 222
GEIRVTCFNAVV+RFY++IEVGRVYLISKGSLKPAQ+NFNHLKNEWEIFLEATSTVDLC
Sbjct: 272 GEIRVTCFNAVVERFYDVIEVGRVYLISKGSLKPAQRNFNHLKNEWEIFLEATSTVDLCP 331
Query: 223 EEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKD 282
+ D+SIPKQQF+F+ ISEIE+ ENNSI+DVIGIVISVNPSVPILRKNGMETQRRILNLKD
Sbjct: 332 DGDNSIPKQQFTFKTISEIENVENNSILDVIGIVISVNPSVPILRKNGMETQRRILNLKD 391
Query: 283 TSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFIN 342
SGR++ELTLWGDFCNKEGQ+LQE+VD G FPVL+VK+GKV+DFSGKS+GTI STQLFIN
Sbjct: 392 GSGRNIELTLWGDFCNKEGQQLQEIVDSGDFPVLAVKAGKVSDFSGKSLGTISSTQLFIN 451
Query: 343 PDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVT 402
PD EAH L++WFD GG++ A+VSISR+I GG+KNEI KTVSQIK+EGLGRS++PDWVT
Sbjct: 452 PDIPEAHGLKDWFDRGGQHTASVSISRDILPGGSKNEIRKTVSQIKHEGLGRSDRPDWVT 511
Query: 403 VRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQ 461
V A ITF+K+D+FCYTACPLMIGDRQCNKKVT SGN RWQCDRCNQE DECDYRYLLQ Q
Sbjct: 512 VSARITFVKTDTFCYTACPLMIGDRQCNKKVTSSGNSRWQCDRCNQEFDECDYRYLLQVQ 571
Query: 462 IQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIK 521
IQD TGLTWVTAFQESGEEILG PAKELY LKYE+QDD +F ++IRSR+F Q+LFRLKIK
Sbjct: 572 IQDHTGLTWVTAFQESGEEILGLPAKELYQLKYEMQDDTKFSDVIRSRLFQQFLFRLKIK 631
Query: 522 EELYGDEQRVKITVIRADQVNYSSESRYLLDLISKSFR 559
EE+YGDEQRVKITV++A++VNYSSE RYLLDLIS+ R
Sbjct: 632 EEMYGDEQRVKITVVKAEKVNYSSEGRYLLDLISQCPR 669
>gi|449488185|ref|XP_004157962.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Cucumis sativus]
Length = 623
Score = 842 bits (2174), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/560 (73%), Positives = 476/560 (85%), Gaps = 31/560 (5%)
Query: 1 METIILDCEPIGNPKIFSESELTAQKTIPSNNLPQPVRVNNYSAPNSGTFNLQNSGTFNS 60
+ETIILDCE IGNPK ++SE AQK PS NL QP +V N
Sbjct: 94 LETIILDCEIIGNPKSSAQSENFAQKATPSVNLEQPAKVGN------------------- 134
Query: 61 QNPGSFSTPNSGTFRAPNAGSIVRSFQPTVQPPYQPPPNFRNHGPILKNEAPARIIPIAA 120
G A N V+SFQ TVQPPYQPPPN++NHG I+KNEAPARIIPIAA
Sbjct: 135 -----------GHLSARNPVHNVQSFQATVQPPYQPPPNYKNHGAIIKNEAPARIIPIAA 183
Query: 121 LNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEI 180
LNPYQGRWAIKARVTAKGDLRRYNNA+GDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYE+
Sbjct: 184 LNPYQGRWAIKARVTAKGDLRRYNNAKGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEV 243
Query: 181 IEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISE 240
IEVG+VYLISKGSLKPA+K+FNHLKNEWE+FLEA+STV+LC +EDD+IP+QQFSF+ ISE
Sbjct: 244 IEVGKVYLISKGSLKPARKDFNHLKNEWEVFLEASSTVELCPDEDDTIPRQQFSFKPISE 303
Query: 241 IESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKE 300
IE+AE NSI+DVIGIV S+NPS+P+LRKNGMETQRR++ LKD SGRSVELT+WGDFCNKE
Sbjct: 304 IENAETNSILDVIGIVTSINPSIPVLRKNGMETQRRVVYLKDASGRSVELTMWGDFCNKE 363
Query: 301 GQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGK 360
GQKLQE++ G PVL+VKSGKV+DF+GKSIGTI STQLFINPD EAH LREW+D GGK
Sbjct: 364 GQKLQEIIYSGLSPVLAVKSGKVSDFTGKSIGTISSTQLFINPDLPEAHILREWYDGGGK 423
Query: 361 NAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTAC 420
N ++SIS+EI G AKN+I KTVSQIK+EGLGR++KPDW+TV+A I+FIK+DSFCYTAC
Sbjct: 424 NTTSLSISKEIVPGSAKNDIRKTVSQIKDEGLGRADKPDWITVKATISFIKTDSFCYTAC 483
Query: 421 PLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGE 479
PLMIGDRQCNKKVT+SGN +W CDRCNQE ++CDYRYLLQAQIQD TGLTWVTAFQE+GE
Sbjct: 484 PLMIGDRQCNKKVTRSGNSKWVCDRCNQEFEDCDYRYLLQAQIQDHTGLTWVTAFQETGE 543
Query: 480 EILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRAD 539
EILG KELYMLKYE QDDV+FGEIIRS++F+Q+LFRLKIKEE+YGDEQRVK TV++AD
Sbjct: 544 EILGVSGKELYMLKYEEQDDVKFGEIIRSKIFDQFLFRLKIKEEVYGDEQRVKNTVVKAD 603
Query: 540 QVNYSSESRYLLDLISKSFR 559
+VNYSSES+Y+LDL+SK R
Sbjct: 604 RVNYSSESKYMLDLLSKFSR 623
>gi|449446612|ref|XP_004141065.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Cucumis sativus]
Length = 694
Score = 833 bits (2152), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/551 (74%), Positives = 470/551 (85%), Gaps = 31/551 (5%)
Query: 1 METIILDCEPIGNPKIFSESELTAQKTIPSNNLPQPVRVNNYSAPNSGTFNLQNSGTFNS 60
+ETIILDCE IGNPK ++SE AQK PS NL QP +V N
Sbjct: 94 LETIILDCEIIGNPKSSAQSENFAQKATPSVNLEQPAKVGN------------------- 134
Query: 61 QNPGSFSTPNSGTFRAPNAGSIVRSFQPTVQPPYQPPPNFRNHGPILKNEAPARIIPIAA 120
G A N V+SFQ TVQPPYQPPPN++NHG I+KNEAPARIIPIAA
Sbjct: 135 -----------GHLSARNPVHNVQSFQATVQPPYQPPPNYKNHGAIIKNEAPARIIPIAA 183
Query: 121 LNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEI 180
LNPYQGRWAIKARVTAKGDLRRYNNA+GDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYE+
Sbjct: 184 LNPYQGRWAIKARVTAKGDLRRYNNAKGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEV 243
Query: 181 IEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISE 240
IEVG+VYLISKGSLKPA+K+FNHLKNEWE+FLEA+STV+LC +EDD+IP+QQFSF+ ISE
Sbjct: 244 IEVGKVYLISKGSLKPARKDFNHLKNEWEVFLEASSTVELCPDEDDTIPRQQFSFKPISE 303
Query: 241 IESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKE 300
IE+AE NSI+DVIGIV S+NPS+P+LRKNGMETQRR++ LKD SGRSVELT+WGDFCNKE
Sbjct: 304 IENAETNSILDVIGIVTSINPSIPVLRKNGMETQRRVVYLKDASGRSVELTMWGDFCNKE 363
Query: 301 GQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGK 360
GQKLQE++ G PVL+VKSGKV+DF+GKSIGTI STQLFINPD EAH LREW+D GGK
Sbjct: 364 GQKLQEIIYSGLSPVLAVKSGKVSDFTGKSIGTISSTQLFINPDLPEAHILREWYDGGGK 423
Query: 361 NAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTAC 420
N ++SIS+EI G AKN+I KTVSQIK+EGLGR++KPDW+TV+A I+FIK+DSFCYTAC
Sbjct: 424 NTTSLSISKEIVPGSAKNDIRKTVSQIKDEGLGRADKPDWITVKATISFIKTDSFCYTAC 483
Query: 421 PLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGE 479
PLMIGDRQCNKKVT+SGN +W CDRCNQE ++CDYRYLLQAQIQD TGLTWVTAFQE+GE
Sbjct: 484 PLMIGDRQCNKKVTRSGNSKWVCDRCNQEFEDCDYRYLLQAQIQDHTGLTWVTAFQETGE 543
Query: 480 EILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRAD 539
EILG AKELYMLKYE QDDV+FGEIIRS++F+Q+LFRLKIKEE+YGDEQRVK TV++AD
Sbjct: 544 EILGVSAKELYMLKYEEQDDVKFGEIIRSKIFDQFLFRLKIKEEVYGDEQRVKNTVVKAD 603
Query: 540 QVNYSSESRYL 550
+VNYSSES+Y+
Sbjct: 604 RVNYSSESKYI 614
>gi|33621259|gb|AAQ23194.1| RPA 70kDa subunit [Pisum sativum]
Length = 637
Score = 825 bits (2132), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/562 (70%), Positives = 469/562 (83%), Gaps = 24/562 (4%)
Query: 1 METIILDCEPIGNPKIFSESELTAQKTIPSNNLPQPVRVNNYSAPNSGTFNLQNSGTFNS 60
ME+II DCE IG+PK F +SEL QK + N + G+ +
Sbjct: 98 MESIIPDCEIIGSPKPFVDSELPVQKALRDNTV----------------------GSSIN 135
Query: 61 QNPGSFSTPNSGTFRAPNAGSI-VRSFQPTVQPPYQPPPNFRNHGPILKNEAPARIIPIA 119
N + NS A N GS V++F+PT+QP Y+PPP ++ G ++KNEAPAR IPIA
Sbjct: 136 SNNNNSYNSNSNILAAQNTGSTHVQNFRPTIQPSYKPPPVYKGRGAVMKNEAPARTIPIA 195
Query: 120 ALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYE 179
ALNPYQGRWAI+ARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA+VDRFY+
Sbjct: 196 ALNPYQGRWAIRARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAIVDRFYD 255
Query: 180 IIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHIS 239
IEVG+VYLISKG+LKPAQKNFNHLKNEWEI L+ STV+LC +ED S PKQQFSFR IS
Sbjct: 256 SIEVGKVYLISKGNLKPAQKNFNHLKNEWEIMLDLNSTVELCPDEDGSYPKQQFSFRPIS 315
Query: 240 EIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNK 299
+IE+ E+N+I+DVIG+V SVNPSVPILRKNGMET RRILNLKD SGRSVELTLWG+FCN+
Sbjct: 316 DIENVESNAILDVIGVVTSVNPSVPILRKNGMETLRRILNLKDNSGRSVELTLWGEFCNR 375
Query: 300 EGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGG 359
EGQKLQEMVD G FP+L+VK+GKVN+FSGKSIG+I +TQLFINPDF EA LR WFD G
Sbjct: 376 EGQKLQEMVDAGVFPILAVKAGKVNEFSGKSIGSISTTQLFINPDFPEAQSLRAWFDQVG 435
Query: 360 KNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTA 419
K++A++SIS++I GG KNEI KTVSQI++EGLGRS+KPDW+T+RA I+F+K+D+FCYTA
Sbjct: 436 KDSASLSISKDITHGGPKNEIRKTVSQIRDEGLGRSDKPDWITIRATISFMKTDTFCYTA 495
Query: 420 CPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESG 478
CPLMIGDRQCNKKVT+SG+ RWQCDRCNQE +ECDYRYLLQAQIQD TGLTWVTAFQE G
Sbjct: 496 CPLMIGDRQCNKKVTRSGDTRWQCDRCNQEFEECDYRYLLQAQIQDHTGLTWVTAFQEGG 555
Query: 479 EEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRA 538
EEI+G PAKELY LKYE +DD RFG+I++SR+FN ++FRLKIKEELYG+EQ+VK TV++A
Sbjct: 556 EEIMGYPAKELYALKYEQEDDERFGDIVKSRLFNHFVFRLKIKEELYGEEQKVKSTVVKA 615
Query: 539 DQVNYSSESRYLLDLISKSFRK 560
D+VNYS+ESRY+LDLISK RK
Sbjct: 616 DKVNYSAESRYMLDLISKFGRK 637
>gi|42570719|ref|NP_973433.1| replication factor A1 [Arabidopsis thaliana]
gi|330250915|gb|AEC06009.1| replication factor A1 [Arabidopsis thaliana]
Length = 617
Score = 811 bits (2095), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/559 (69%), Positives = 467/559 (83%), Gaps = 19/559 (3%)
Query: 1 METIILDCEPIGNPKIFSESELTAQKTIP-SNNLPQPVRVNNYSAPNSGTFNLQNSGTFN 59
METI+ E IGNP IF E++ AQKT + N+P P RV + N N
Sbjct: 75 METIVQQSETIGNPTIFGETDTEAQKTFSGTGNIPPPNRVVFNEPMVQHSVNRAPPRGVN 134
Query: 60 SQNPGSFSTPNSGTFRAPNAGSIVRSFQPTVQPPYQPPPNFRNHGPILKNEAPARIIPIA 119
QN + +TP SF+P+VQP YQPP ++RNHGPI+KNEAPAR+IPIA
Sbjct: 135 IQNQAN-NTP---------------SFRPSVQPSYQPPASYRNHGPIMKNEAPARVIPIA 178
Query: 120 ALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYE 179
ALNPYQGRWAIKARVTAKGD+RRYNNA+GDGKVFSFDLLD DGGEIRVTCFNA+VDRFY+
Sbjct: 179 ALNPYQGRWAIKARVTAKGDIRRYNNAKGDGKVFSFDLLDYDGGEIRVTCFNALVDRFYD 238
Query: 180 IIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHIS 239
+ EVG+VYLISKGSLKPAQKNFNHLKNEWEIFLE+TSTV+LC +ED SIPKQQFSFR IS
Sbjct: 239 VTEVGKVYLISKGSLKPAQKNFNHLKNEWEIFLESTSTVELCPDEDGSIPKQQFSFRPIS 298
Query: 240 EIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNK 299
+IE+AENN+I+DVIG+V SVNPSVPILRKNGMET RRILNLKD SG++VE+TLWG+FCN+
Sbjct: 299 DIENAENNTILDVIGVVTSVNPSVPILRKNGMETHRRILNLKDESGKAVEVTLWGEFCNR 358
Query: 300 EGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGG 359
+G++L+EMVD F PVL++K+GKV+DFSGKS+GTI STQLFINPDF EAH+LR WFD GG
Sbjct: 359 DGRQLEEMVDSAFHPVLAIKAGKVSDFSGKSVGTISSTQLFINPDFPEAHKLRTWFDYGG 418
Query: 360 KNAATVSISREIAAGG-AKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYT 418
K+ A+ SISR+ GG ++NEI K VSQIK EGLGRS+KPDW+TV+A I+FIK+DSFCYT
Sbjct: 419 KDTASFSISRDTMPGGVSRNEIRKNVSQIKEEGLGRSDKPDWITVKATISFIKTDSFCYT 478
Query: 419 ACPLMIGDRQCNKKVTQSG-NRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQES 477
ACPLMIGD+QCNKKVT+SG NRW CDRCNQE DECDYRYLLQ QIQD TGLTW+TAFQE+
Sbjct: 479 ACPLMIGDKQCNKKVTRSGTNRWLCDRCNQESDECDYRYLLQVQIQDHTGLTWITAFQET 538
Query: 478 GEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIR 537
GEEI+GCPAK+LY +KYEL+ + F EI+R R+F+QY+ +LKIKEE YGDEQRVK+TV++
Sbjct: 539 GEEIMGCPAKKLYAMKYELEKEEEFAEIVRDRLFHQYMLKLKIKEESYGDEQRVKMTVVK 598
Query: 538 ADQVNYSSESRYLLDLISK 556
D+VNY+SES+Y+LDL+ +
Sbjct: 599 VDKVNYTSESKYMLDLLVR 617
>gi|15225129|ref|NP_178690.1| replication factor A1 [Arabidopsis thaliana]
gi|4584356|gb|AAD25150.1| putative replication protein A1 [Arabidopsis thaliana]
gi|26452416|dbj|BAC43293.1| putative replication protein A1 [Arabidopsis thaliana]
gi|29029004|gb|AAO64881.1| At2g06510 [Arabidopsis thaliana]
gi|330250916|gb|AEC06010.1| replication factor A1 [Arabidopsis thaliana]
Length = 640
Score = 811 bits (2095), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/559 (69%), Positives = 467/559 (83%), Gaps = 19/559 (3%)
Query: 1 METIILDCEPIGNPKIFSESELTAQKTIP-SNNLPQPVRVNNYSAPNSGTFNLQNSGTFN 59
METI+ E IGNP IF E++ AQKT + N+P P RV + N N
Sbjct: 98 METIVQQSETIGNPTIFGETDTEAQKTFSGTGNIPPPNRVVFNEPMVQHSVNRAPPRGVN 157
Query: 60 SQNPGSFSTPNSGTFRAPNAGSIVRSFQPTVQPPYQPPPNFRNHGPILKNEAPARIIPIA 119
QN + +TP SF+P+VQP YQPP ++RNHGPI+KNEAPAR+IPIA
Sbjct: 158 IQNQAN-NTP---------------SFRPSVQPSYQPPASYRNHGPIMKNEAPARVIPIA 201
Query: 120 ALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYE 179
ALNPYQGRWAIKARVTAKGD+RRYNNA+GDGKVFSFDLLD DGGEIRVTCFNA+VDRFY+
Sbjct: 202 ALNPYQGRWAIKARVTAKGDIRRYNNAKGDGKVFSFDLLDYDGGEIRVTCFNALVDRFYD 261
Query: 180 IIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHIS 239
+ EVG+VYLISKGSLKPAQKNFNHLKNEWEIFLE+TSTV+LC +ED SIPKQQFSFR IS
Sbjct: 262 VTEVGKVYLISKGSLKPAQKNFNHLKNEWEIFLESTSTVELCPDEDGSIPKQQFSFRPIS 321
Query: 240 EIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNK 299
+IE+AENN+I+DVIG+V SVNPSVPILRKNGMET RRILNLKD SG++VE+TLWG+FCN+
Sbjct: 322 DIENAENNTILDVIGVVTSVNPSVPILRKNGMETHRRILNLKDESGKAVEVTLWGEFCNR 381
Query: 300 EGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGG 359
+G++L+EMVD F PVL++K+GKV+DFSGKS+GTI STQLFINPDF EAH+LR WFD GG
Sbjct: 382 DGRQLEEMVDSAFHPVLAIKAGKVSDFSGKSVGTISSTQLFINPDFPEAHKLRTWFDYGG 441
Query: 360 KNAATVSISREIAAGG-AKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYT 418
K+ A+ SISR+ GG ++NEI K VSQIK EGLGRS+KPDW+TV+A I+FIK+DSFCYT
Sbjct: 442 KDTASFSISRDTMPGGVSRNEIRKNVSQIKEEGLGRSDKPDWITVKATISFIKTDSFCYT 501
Query: 419 ACPLMIGDRQCNKKVTQSG-NRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQES 477
ACPLMIGD+QCNKKVT+SG NRW CDRCNQE DECDYRYLLQ QIQD TGLTW+TAFQE+
Sbjct: 502 ACPLMIGDKQCNKKVTRSGTNRWLCDRCNQESDECDYRYLLQVQIQDHTGLTWITAFQET 561
Query: 478 GEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIR 537
GEEI+GCPAK+LY +KYEL+ + F EI+R R+F+QY+ +LKIKEE YGDEQRVK+TV++
Sbjct: 562 GEEIMGCPAKKLYAMKYELEKEEEFAEIVRDRLFHQYMLKLKIKEESYGDEQRVKMTVVK 621
Query: 538 ADQVNYSSESRYLLDLISK 556
D+VNY+SES+Y+LDL+ +
Sbjct: 622 VDKVNYTSESKYMLDLLVR 640
>gi|297831712|ref|XP_002883738.1| hypothetical protein ARALYDRAFT_899421 [Arabidopsis lyrata subsp.
lyrata]
gi|297329578|gb|EFH59997.1| hypothetical protein ARALYDRAFT_899421 [Arabidopsis lyrata subsp.
lyrata]
Length = 640
Score = 808 bits (2088), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/559 (69%), Positives = 469/559 (83%), Gaps = 19/559 (3%)
Query: 1 METIILDCEPIGNPKIFSESELTAQKTIPS-NNLPQPVRVNNYSAPNSGTFNLQNSGTFN 59
METI+ E IGNP IF E++ AQK + + N+P P RV + N N
Sbjct: 98 METIVPHSETIGNPTIFGETDTEAQKPLSAVGNIPPPNRVVFNEPTAQHSVNRAPPRGVN 157
Query: 60 SQNPGSFSTPNSGTFRAPNAGSIVRSFQPTVQPPYQPPPNFRNHGPILKNEAPARIIPIA 119
QNP + STP SF+P+VQP YQPP ++RNHGPI+KNEAPAR+IPIA
Sbjct: 158 IQNPAN-STP---------------SFRPSVQPSYQPPASYRNHGPIMKNEAPARVIPIA 201
Query: 120 ALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYE 179
ALNPYQGRWAIKARVTAKGD+RRYNNA+GDGKV+SFDLLDSDGGEIRVTCFNAV DRFY+
Sbjct: 202 ALNPYQGRWAIKARVTAKGDIRRYNNAKGDGKVYSFDLLDSDGGEIRVTCFNAVADRFYD 261
Query: 180 IIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHIS 239
+ EVG+VYLISKGSLKPAQKN+NHLKNEWEIFLE+TSTV+LC +ED SIP+QQFSFR IS
Sbjct: 262 VTEVGKVYLISKGSLKPAQKNYNHLKNEWEIFLESTSTVELCPDEDGSIPRQQFSFRPIS 321
Query: 240 EIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNK 299
+IE+AENN+I+DVIG+V SVNPSVPILRKNGMET RRILNLKD SG++VE+TLWG+FCN+
Sbjct: 322 DIENAENNTILDVIGVVTSVNPSVPILRKNGMETHRRILNLKDESGKAVEVTLWGEFCNR 381
Query: 300 EGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGG 359
+G++L+EMVD F PVL++K+GKV+DFSGKS+GTI STQLFINPDF EAH+LR WFD GG
Sbjct: 382 DGRQLEEMVDSAFHPVLAIKAGKVSDFSGKSVGTISSTQLFINPDFPEAHKLRTWFDHGG 441
Query: 360 KNAATVSISREIAAGG-AKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYT 418
K+ A+ SISR+ GG ++NEI K+VSQIK EGLGRS+KPDW+TV+A I+FIK+DSFCYT
Sbjct: 442 KDTASFSISRDTMPGGVSRNEIRKSVSQIKEEGLGRSDKPDWITVKATISFIKTDSFCYT 501
Query: 419 ACPLMIGDRQCNKKVTQSG-NRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQES 477
ACPLMIGD+QCNKKVT+SG NRW CDRCNQE DECDYRYLLQ QIQD TGLTW+TAFQE+
Sbjct: 502 ACPLMIGDKQCNKKVTRSGTNRWLCDRCNQESDECDYRYLLQVQIQDHTGLTWITAFQET 561
Query: 478 GEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIR 537
GEEI+GCPAK+LY LKYEL+ + F EI+R R+F+QY+ +LKIKEE YGDEQRVK+TV++
Sbjct: 562 GEEIMGCPAKKLYALKYELEKEEEFAEIVRDRLFHQYMLKLKIKEESYGDEQRVKMTVVK 621
Query: 538 ADQVNYSSESRYLLDLISK 556
D++NY+SES+Y+LDL+ +
Sbjct: 622 VDKMNYTSESKYMLDLLVR 640
>gi|356556324|ref|XP_003546476.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Glycine max]
Length = 637
Score = 798 bits (2061), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/561 (70%), Positives = 475/561 (84%), Gaps = 24/561 (4%)
Query: 1 METIILDCEPIGNPKIFSESELTAQKTIPSNNLPQPVRVNNYSAPNSGTFNLQNSGTFNS 60
METI+ + E IGNPK + +S+ IP+ VR ++ ++ +S NL S N+
Sbjct: 100 METIMDEFEIIGNPKPYMDSD------IPT------VRASDSASADSTVENLPRSYNSNN 147
Query: 61 QNPGSFSTPNSGTFRAPNAGSIVRSFQPTVQPPYQPPPNFRNHGPILKNEAPARIIPIAA 120
+ G ++ N+ ++F+PT+QPPYQPPP ++ GP++KNEAPARIIPIAA
Sbjct: 148 SSAGQNASHNN-----------TQNFRPTIQPPYQPPPLYKGRGPVVKNEAPARIIPIAA 196
Query: 121 LNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEI 180
LNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFY +
Sbjct: 197 LNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYNV 256
Query: 181 IEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISE 240
IEVG+VY+ISKGSLKPAQKNFNHLKNEWEI LE++S V+LC +ED SIP+QQFSFR IS+
Sbjct: 257 IEVGKVYMISKGSLKPAQKNFNHLKNEWEILLESSSMVELCPDEDGSIPRQQFSFRPISD 316
Query: 241 IESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKE 300
IE+ +NNSI+DVIG+V SVNPSVPILRKNGMETQRRIL+LKD+SG SVELTLWG+FCN+E
Sbjct: 317 IENVDNNSILDVIGVVTSVNPSVPILRKNGMETQRRILSLKDSSGSSVELTLWGEFCNRE 376
Query: 301 GQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGK 360
GQ+LQ+MVD GFFP+L+VK+GKVNDFSGKSIG+I +TQLFINPDF EAH LREWF+ GK
Sbjct: 377 GQQLQDMVDAGFFPILAVKTGKVNDFSGKSIGSISTTQLFINPDFPEAHSLREWFELVGK 436
Query: 361 NAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTAC 420
++A++SIS++I G KNE+ KTVSQIK+EGLGRS+KPDW+TVRA I FIK+D+FCYTAC
Sbjct: 437 DSASLSISKDIIPGALKNEVRKTVSQIKDEGLGRSDKPDWITVRAAILFIKTDTFCYTAC 496
Query: 421 PLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGE 479
PLMIGDRQCNKKVT+ GN RWQCDRCNQE +ECDYRYLLQ QI D TGL WVTAFQE+GE
Sbjct: 497 PLMIGDRQCNKKVTRLGNTRWQCDRCNQEFEECDYRYLLQVQILDGTGLAWVTAFQEAGE 556
Query: 480 EILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRAD 539
EI+ AK+LY LK+E QDD +FGEII+SR+FNQ++FRLKIKEELYGDEQ+VKITV++AD
Sbjct: 557 EIMDYSAKDLYFLKHEEQDDEKFGEIIKSRLFNQFMFRLKIKEELYGDEQKVKITVVKAD 616
Query: 540 QVNYSSESRYLLDLISKSFRK 560
+VNYSSESRY+LD ISK R+
Sbjct: 617 KVNYSSESRYMLDTISKFCRQ 637
>gi|224122534|ref|XP_002330505.1| predicted protein [Populus trichocarpa]
gi|222872439|gb|EEF09570.1| predicted protein [Populus trichocarpa]
Length = 502
Score = 720 bits (1859), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/493 (74%), Positives = 416/493 (84%), Gaps = 19/493 (3%)
Query: 20 SELTAQKTIPSNNLPQP--VRVNNYSAPNSGT--------FNLQNSG--------TFNSQ 61
S+ AQK +P+ + Q V NN S+ + G+ + QN G T ++Q
Sbjct: 3 SDAPAQKALPNTDSMQSSMVDYNNPSSQSHGSNMHSIRPALSSQNHGGNMQSFRPTSSTQ 62
Query: 62 NPGSFSTPNSGTFRAPNAGSIVRSFQPTVQPPYQPPPNFRNHGPILKNEAPARIIPIAAL 121
N GS A N G+ V+SF+PTVQPPYQPPP++RNHG ++KNEAPARIIPI AL
Sbjct: 63 NQGSKMRSFQPALGAQNYGNDVQSFRPTVQPPYQPPPSYRNHGAVMKNEAPARIIPINAL 122
Query: 122 NPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEII 181
NPYQGRWAIKAR+TAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFY+++
Sbjct: 123 NPYQGRWAIKARITAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYDVV 182
Query: 182 EVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEI 241
EVG+VYLISKGSLKPAQKNFNHLKN+WEIFLEATSTVDLC EED SIP+QQFSF+ ISEI
Sbjct: 183 EVGKVYLISKGSLKPAQKNFNHLKNDWEIFLEATSTVDLCPEEDGSIPQQQFSFKPISEI 242
Query: 242 ESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEG 301
E AENNSI DVIG+VISVNPSVPILRKNGMETQRRILNLKD SG +VELTLWGDFCNKEG
Sbjct: 243 EIAENNSIFDVIGVVISVNPSVPILRKNGMETQRRILNLKDGSGWTVELTLWGDFCNKEG 302
Query: 302 QKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKN 361
QKLQEMVD GFFP+L+VK+GKV+DF+GKS+GTI STQLFINPD EAH ++WFD GG++
Sbjct: 303 QKLQEMVDSGFFPILAVKAGKVSDFNGKSLGTISSTQLFINPDIPEAHAAKDWFDRGGRD 362
Query: 362 AATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACP 421
A++SIS++IA GG KNE+ KTVSQ+K EGLGRS+KPDW TVRA ++FIK+D+FCYTACP
Sbjct: 363 VASMSISKDIAQGGPKNEVRKTVSQVKLEGLGRSDKPDWATVRASVSFIKTDTFCYTACP 422
Query: 422 LMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEE 480
LMIGDRQCNKKVT+SGN RWQCDRCNQE D+CDYRYLLQ QIQD TGLTW TAFQESGEE
Sbjct: 423 LMIGDRQCNKKVTRSGNSRWQCDRCNQEFDDCDYRYLLQVQIQDHTGLTWATAFQESGEE 482
Query: 481 ILGCPAKELYMLK 493
ILG PAKELY+LK
Sbjct: 483 ILGYPAKELYLLK 495
>gi|115449015|ref|NP_001048287.1| Os02g0776800 [Oryza sativa Japonica Group]
gi|46805512|dbj|BAD16963.1| replication protein A 70kDa [Oryza sativa Japonica Group]
gi|46806154|dbj|BAD17384.1| replication protein A 70kDa [Oryza sativa Japonica Group]
gi|113537818|dbj|BAF10201.1| Os02g0776800 [Oryza sativa Japonica Group]
gi|125583873|gb|EAZ24804.1| hypothetical protein OsJ_08582 [Oryza sativa Japonica Group]
gi|215701492|dbj|BAG92916.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215715207|dbj|BAG94958.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 656
Score = 711 bits (1836), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/564 (62%), Positives = 442/564 (78%), Gaps = 19/564 (3%)
Query: 1 METIILDCEPIGNPKIFSESELTAQKTIPSNNLPQPVRVNNYS-APNSGTF--NLQNSGT 57
+E ++ +CE IGNP SE+ + +P P RV ++ AP G N N+ T
Sbjct: 101 LEVLVSECEIIGNPTALSET---------GSPIPNPTRVEQFNGAPQYGLMAGNSSNTTT 151
Query: 58 FNSQNPGSFSTP---NSGTFRAPNAGSIVRSFQPTVQPPYQPPPNFRNHGPILKNEAPAR 114
S N F NS F A V FQPTVQP Y+P PN++NHG I+KNEAPAR
Sbjct: 152 KPSDNVPLFQNSMAGNSSNF-ATRPSDKVPVFQPTVQPSYRPAPNYKNHGAIMKNEAPAR 210
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
IIPI+ALNPYQGRWAIKARVTAKGD+RRY+NA+GDGKVFSFDLLDSDGGEIRVTCFNA++
Sbjct: 211 IIPISALNPYQGRWAIKARVTAKGDIRRYHNAKGDGKVFSFDLLDSDGGEIRVTCFNALL 270
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
DRFYE++EVG+VY++S+G+L+PAQKN+NHL NEWEI LE STVDLC +E+ SIP Q+F
Sbjct: 271 DRFYEVVEVGKVYVVSRGNLRPAQKNYNHLNNEWEILLENGSTVDLCPDENSSIPTQRFD 330
Query: 235 FRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWG 294
FR I+EIE A+NN+I+D+IG+V SVNP I RKNGMETQ+R +NLKD SGRSVE+T+WG
Sbjct: 331 FRPINEIEDAQNNAILDIIGVVTSVNPCTTIQRKNGMETQKRTMNLKDMSGRSVEVTMWG 390
Query: 295 DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREW 354
DFCN+EG +LQ MV+ G FPVL+VK+GKV+DFSGKS+GTI STQLFINPD AEAH LR+W
Sbjct: 391 DFCNREGSQLQGMVERGIFPVLAVKAGKVSDFSGKSVGTISSTQLFINPDSAEAHSLRQW 450
Query: 355 FDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDS 414
FDSGG++A+T SISR+I G ++NEI KTV+QIK+EGLG +KPDW+TV+A + F K++S
Sbjct: 451 FDSGGRDASTQSISRDITPGASRNEIRKTVAQIKDEGLGMGDKPDWITVKATVIFFKNES 510
Query: 415 FCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTA 473
F YTACP MIGDRQCNKKVT+S N W CD+C++E +ECDYRYLLQ QIQD +G WVTA
Sbjct: 511 FFYTACPNMIGDRQCNKKVTKSTNGNWTCDKCDREFEECDYRYLLQFQIQDHSGTAWVTA 570
Query: 474 FQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKI 533
FQE+G+E+LGC A EL LK ++D RF + + + +F +YL RLK+KEE YGDE++VK
Sbjct: 571 FQEAGQELLGCSATELNALKE--REDPRFADTMLNCLFQEYLLRLKVKEESYGDERKVKN 628
Query: 534 TVIRADQVNYSSESRYLLDLISKS 557
T ++ ++V+ S ES++LLDLISKS
Sbjct: 629 TAVKVEKVDPSGESKFLLDLISKS 652
>gi|125541337|gb|EAY87732.1| hypothetical protein OsI_09147 [Oryza sativa Indica Group]
Length = 658
Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/565 (62%), Positives = 442/565 (78%), Gaps = 21/565 (3%)
Query: 1 METIILDCEPIGNPKIFSESELTAQKTIPSNNLPQPVRVNNYS-APNSGTF--NLQNSGT 57
+E ++ +CE IGNP SE+ + +P P RV ++ AP G N N+ T
Sbjct: 103 LEVLVSECEIIGNPTALSET---------GSPIPNPTRVEQFNGAPQYGLMAGNSSNTTT 153
Query: 58 FNSQNPGSFSTP---NSGTFRAPNAGSIVRSFQPTVQPPYQPPPNFRNHGPILKNEAPAR 114
S N F NS F A V FQPTVQP Y+P PN++NHG I+KNEAPAR
Sbjct: 154 KPSDNVPLFQNSMAGNSSNF-ATRPSDKVPVFQPTVQPSYRPAPNYKNHGAIMKNEAPAR 212
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
IIPI+ALNPYQGRWAIKARVTAKGD+RRY+NA+GDGKVFSFDLLDSDGGEIRVTCFNA++
Sbjct: 213 IIPISALNPYQGRWAIKARVTAKGDIRRYHNAKGDGKVFSFDLLDSDGGEIRVTCFNALL 272
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
DRFYE++EVG+VY++S+G+L+PAQKN+NHL NEWEI LE STVDLC +ED SIP Q+F
Sbjct: 273 DRFYEVVEVGKVYVVSRGNLRPAQKNYNHLNNEWEILLENGSTVDLCPDEDSSIPTQRFD 332
Query: 235 FRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWG 294
FR I+EIE A+NN+I+D+IG+V SVNP I RKNGMETQ+R +NLKD SGRSVE+T+WG
Sbjct: 333 FRPINEIEDAQNNAILDIIGVVTSVNPCTTIQRKNGMETQKRTMNLKDMSGRSVEVTMWG 392
Query: 295 DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREW 354
D CN+EG +LQ MV+ G FPVL+VK+GKV+DFSGKS+GTI STQLFINPD AEAH LR+W
Sbjct: 393 DLCNREGSQLQGMVERGIFPVLAVKAGKVSDFSGKSVGTISSTQLFINPDSAEAHSLRQW 452
Query: 355 FDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDS 414
FDSGG++A+T SISR+I G ++NEI KTV+QIK+EGLG +KPDW+TV+A + F K++S
Sbjct: 453 FDSGGRDASTQSISRDITPGASRNEIRKTVAQIKDEGLGMGDKPDWITVKATVIFFKNES 512
Query: 415 FCYTACPLMIGDRQCNKKVTQS--GNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVT 472
F YTACP MIGDRQCNKKVT+S GN W CD+C++E +ECDYRYLLQ QIQD +G WVT
Sbjct: 513 FFYTACPNMIGDRQCNKKVTKSTTGN-WTCDKCDREFEECDYRYLLQFQIQDHSGTAWVT 571
Query: 473 AFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVK 532
AFQE+G+E+LGC A EL LK ++D RF + + + +F +YL RLK+KEE YGDE++VK
Sbjct: 572 AFQEAGQELLGCSATELNALKE--REDPRFADTMLNCLFQEYLLRLKVKEESYGDERKVK 629
Query: 533 ITVIRADQVNYSSESRYLLDLISKS 557
T ++ ++V+ S ES++LLDLISKS
Sbjct: 630 NTAVKVEKVDPSGESKFLLDLISKS 654
>gi|13536993|dbj|BAB40712.1| replication protein A 70kDa [Oryza sativa Japonica Group]
Length = 654
Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/564 (62%), Positives = 440/564 (78%), Gaps = 19/564 (3%)
Query: 1 METIILDCEPIGNPKIFSESELTAQKTIPSNNLPQPVRVNNYS-APNSGTF--NLQNSGT 57
+E ++ +CE IGNP SE+ + +P P RV ++ AP G N N+ T
Sbjct: 99 LEVLVSECEIIGNPTALSET---------GSPIPNPTRVEQFNGAPQYGLMAGNSSNTTT 149
Query: 58 FNSQNPGSFSTP---NSGTFRAPNAGSIVRSFQPTVQPPYQPPPNFRNHGPILKNEAPAR 114
S N F NS F A V FQPTVQP Y+P PN++NHG I+KNEAPAR
Sbjct: 150 KPSDNVPLFQNSMAGNSSNF-ATRPSDKVPVFQPTVQPSYRPAPNYKNHGAIMKNEAPAR 208
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
IIPI+ALNPYQGRWAIKARVTAKGD+RRY+NA+GDGKVFSFDLLDSDGGEIRVTCFNA++
Sbjct: 209 IIPISALNPYQGRWAIKARVTAKGDIRRYHNAKGDGKVFSFDLLDSDGGEIRVTCFNALL 268
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
DRFYE++EVG+VY++S+G+L+PAQKN+NHL NEWEI LE STVDLC +E+ SIP Q+F
Sbjct: 269 DRFYEVVEVGKVYVVSRGNLRPAQKNYNHLNNEWEILLENGSTVDLCPDENSSIPTQRFD 328
Query: 235 FRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWG 294
FR I+EIE A+NN+I+D+IG+V SVNP I RKNGMETQ+R +NLKD SGRSVE+T+WG
Sbjct: 329 FRPINEIEDAQNNAILDIIGVVTSVNPCTTIQRKNGMETQKRTMNLKDMSGRSVEVTMWG 388
Query: 295 DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREW 354
DFCN+EG +LQ MV+ G FPVL+VK+GKV+DFSGKS+GTI STQ FINPD AEAH LR+W
Sbjct: 389 DFCNREGSQLQGMVERGIFPVLAVKAGKVSDFSGKSVGTISSTQFFINPDSAEAHSLRQW 448
Query: 355 FDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDS 414
FDSGG++A T SISR+I G ++NEI KTV+QIK+EGLG +KPDW+TV+A + F K++S
Sbjct: 449 FDSGGRDAFTQSISRDITPGASRNEIRKTVAQIKDEGLGMGDKPDWITVKATVIFFKNES 508
Query: 415 FCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTA 473
F YTACP MIGDRQCNKKVT+S N W CD+C++E +ECDYRYLLQ QIQD +G WVTA
Sbjct: 509 FFYTACPNMIGDRQCNKKVTKSTNGNWTCDKCDREFEECDYRYLLQFQIQDHSGTAWVTA 568
Query: 474 FQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKI 533
FQE+G+E+LGC A EL LK ++D RF + + + +F +YL RLK+KEE YGDE++VK
Sbjct: 569 FQEAGQELLGCSATELNALKE--REDPRFADTMLNCLFQEYLLRLKVKEESYGDERKVKN 626
Query: 534 TVIRADQVNYSSESRYLLDLISKS 557
T ++ ++V+ S ES++LLDLISKS
Sbjct: 627 TAVKVEKVDPSGESKFLLDLISKS 650
>gi|225427514|ref|XP_002264009.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Vitis vinifera]
Length = 882
Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/567 (61%), Positives = 435/567 (76%), Gaps = 24/567 (4%)
Query: 11 IGNPKIFSESELTAQKTIPSN--NLPQPVRVNNYSA-PNSGTFNLQNSGTFNSQ------ 61
+GNP+ F S LT N + P N++S+ P+SG F N+ S+
Sbjct: 148 LGNPQSFGNSSLTGGSAAKPNMAGVASPYHANSFSSNPDSGRFAGTNAPPMYSKMQPDAG 207
Query: 62 ------NPGSFSTPNSGTFRAPNAGSIVRS--FQPTVQPP---YQPPPNFRNHGPILKNE 110
+ GS+ ++G FR N + R+ P QP QPPP + N GP+ +NE
Sbjct: 208 IPASAASTGSYGDQSTG-FRN-NKVEVSRAPYNAPARQPQSAYQQPPPMYTNRGPVARNE 265
Query: 111 APARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCF 170
A ARIIPIAALNPYQGRW IKARVTAKG+LR YNN RGDGKVFSFDLLDSDGGEIRVTCF
Sbjct: 266 AAARIIPIAALNPYQGRWTIKARVTAKGELRHYNNPRGDGKVFSFDLLDSDGGEIRVTCF 325
Query: 171 NAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPK 230
NAV D+FY IE G+VYLISKGSLKPAQK FNHL+N+ EIFLE+TST+ C ++D+SIP+
Sbjct: 326 NAVADQFYNQIETGKVYLISKGSLKPAQKTFNHLRNDHEIFLESTSTIQPCFDDDNSIPR 385
Query: 231 QQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVEL 290
QQF FR IS++ES ENNS+VDVIG+V ++PS I+RKNG ETQ+R L+LKD SGRSVEL
Sbjct: 386 QQFHFRSISDVESMENNSVVDVIGVVSFISPSASIMRKNGTETQKRALHLKDMSGRSVEL 445
Query: 291 TLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHE 350
TLWG+FCN EGQ+LQ M D G FPVL+VKS +VNDF+GK++GTI ++QLFI PDF EA +
Sbjct: 446 TLWGNFCNAEGQRLQNMCDSGVFPVLAVKSARVNDFNGKAVGTISTSQLFIEPDFPEARK 505
Query: 351 LREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFI 410
L+EWFD G+N +VSISRE+ + G + ++ KT+SQIK+E LG SEKPDW+TV A ++FI
Sbjct: 506 LKEWFDKEGRNTPSVSISREVTSMG-RTDVRKTISQIKDERLGTSEKPDWITVCATVSFI 564
Query: 411 KSDSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQTGLT 469
K D+FCYTACP+MIGDRQCNKKVT +G+ +W+C+RC+Q +D+CDYRY+LQ QIQD TGLT
Sbjct: 565 KVDNFCYTACPIMIGDRQCNKKVTNNGDGKWRCERCDQSVDDCDYRYILQFQIQDHTGLT 624
Query: 470 WVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQ 529
WVTAFQE GEEI+G AK LY LKYE QDD +FGEI+R +F +Y F+LK+KEE++ DEQ
Sbjct: 625 WVTAFQECGEEIMGISAKNLYYLKYEEQDDEKFGEILRGVLFTKYSFKLKVKEEIFSDEQ 684
Query: 530 RVKITVIRADQVNYSSESRYLLDLISK 556
RVK TV++A++VN+SSESR+LLD++ K
Sbjct: 685 RVKSTVVKAEKVNFSSESRFLLDMVEK 711
>gi|147856620|emb|CAN82475.1| hypothetical protein VITISV_038295 [Vitis vinifera]
Length = 882
Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/567 (61%), Positives = 434/567 (76%), Gaps = 24/567 (4%)
Query: 11 IGNPKIFSESELTAQKTIPSN--NLPQPVRVNNYSA-PNSGTFNLQNSGTFNSQ------ 61
+GNP+ F S LT N + P N++S+ P+SG F N+ S+
Sbjct: 148 LGNPQSFGNSSLTGGSAAKPNMAGVASPYHANSFSSNPDSGRFAGTNAPPMYSKMQPDAG 207
Query: 62 ------NPGSFSTPNSGTFRAPNAGSIVRS--FQPTVQPP---YQPPPNFRNHGPILKNE 110
+ GS+ ++G FR N + R+ P QP QPPP + N GP+ +NE
Sbjct: 208 IPASAASTGSYGDQSTG-FRN-NKVEVSRAPYNAPARQPQSAYQQPPPMYTNRGPVARNE 265
Query: 111 APARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCF 170
A ARIIPIAALNPYQGRW IKARVTAKG+LR YNN RGDGKVFSFDLLDSDGGEIRVTCF
Sbjct: 266 AXARIIPIAALNPYQGRWTIKARVTAKGELRHYNNPRGDGKVFSFDLLDSDGGEIRVTCF 325
Query: 171 NAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPK 230
NAV D+FY IE G+VYLISKGSLKPAQK FNHL+N+ EIFLE+TST+ C ++D+SIP+
Sbjct: 326 NAVADQFYNQIETGKVYLISKGSLKPAQKTFNHLRNDHEIFLESTSTIQPCFDDDNSIPR 385
Query: 231 QQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVEL 290
QQF FR IS++ES ENNS+VDVIG+V ++PS I+RKNG ETQ+R L+LKD SGRSVEL
Sbjct: 386 QQFHFRXISDVESMENNSVVDVIGVVSFISPSASIMRKNGTETQKRALHLKDMSGRSVEL 445
Query: 291 TLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHE 350
TLWG+FCN EGQ+LQ M D G FPVL+VKS +VNDF+GK++GTI ++QLFI PDF EA +
Sbjct: 446 TLWGNFCNAEGQRLQNMCDSGVFPVLAVKSARVNDFNGKAVGTISTSQLFIEPDFPEARK 505
Query: 351 LREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFI 410
L+EWFD G+N +VSISRE+ G + ++ KT+SQIK+E LG SEKPDW+TV A ++FI
Sbjct: 506 LKEWFDKEGRNTPSVSISREVTXMG-RTDVRKTISQIKDERLGTSEKPDWITVCATVSFI 564
Query: 411 KSDSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQTGLT 469
K D+FCYTACP+MIGDRQCNKKVT +G+ +W+C+RC+Q +D+CDYRY+LQ QIQD TGLT
Sbjct: 565 KVDNFCYTACPIMIGDRQCNKKVTNNGDGKWRCERCDQSVDDCDYRYILQFQIQDHTGLT 624
Query: 470 WVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQ 529
WVTAFQE GEEI+G AK LY LKYE QDD +FGEI+R +F +Y F+LK+KEE++ DEQ
Sbjct: 625 WVTAFQECGEEIMGISAKNLYYLKYEEQDDEKFGEILRGVLFTKYSFKLKVKEEIFSDEQ 684
Query: 530 RVKITVIRADQVNYSSESRYLLDLISK 556
RVK TV++A++VN+SSESR+LLD++ K
Sbjct: 685 RVKSTVVKAEKVNFSSESRFLLDMVEK 711
>gi|449456771|ref|XP_004146122.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Cucumis sativus]
Length = 861
Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/563 (59%), Positives = 424/563 (75%), Gaps = 28/563 (4%)
Query: 20 SELTAQKTIPSNNLPQPVRVNNYSAPNSGTF-NLQNSGTFNSQ-NPGSFSTPNSGT-FRA 76
S + + + S + QP +VN P+ G++ N +G F++ P S+S +SG+ F
Sbjct: 147 SGMIGKGNVSSASFEQP-KVNQSHVPHMGSYSNPPETGRFSASIAPPSYSKTDSGSRFNG 205
Query: 77 P---------------NAGSIV------RSFQPTVQPPYQPPPN-FRNHGPILKNEAPAR 114
P N+GS + + QP YQ PP+ + N GPI KNEA R
Sbjct: 206 PSPLTGSYGDQKMAYHNSGSDIPRPPLNSNAYARPQPIYQQPPSMYSNRGPIAKNEAAPR 265
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
I+PI+ALNPYQGRW IKARVT+KG+LR YNN RGDGKVFSFDLLD+ GEIRVTCFN V
Sbjct: 266 IMPISALNPYQGRWTIKARVTSKGELRHYNNPRGDGKVFSFDLLDAYRGEIRVTCFNTVA 325
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
D+FY IE G+VY ISKGSLKPAQKNFNHLKN++EIFLE TST+ C E+D SIP+QQF
Sbjct: 326 DQFYNQIESGKVYFISKGSLKPAQKNFNHLKNDYEIFLENTSTIQPCFEDDQSIPQQQFH 385
Query: 235 FRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWG 294
F I EIE ++NS+VDVIG+V S+NP+ ++RKNG ETQ+R L LKD SGRSVELTLWG
Sbjct: 386 FHQIGEIEGMDSNSVVDVIGVVSSINPATSLMRKNGTETQKRSLQLKDMSGRSVELTLWG 445
Query: 295 DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREW 354
+FC EGQ+LQ M D G FPVL+VKS +V+DF+GK++GTI ++QLFI PDF EAH LREW
Sbjct: 446 NFCQAEGQRLQNMCDSGLFPVLAVKSSRVSDFNGKAVGTISTSQLFIEPDFPEAHSLREW 505
Query: 355 FDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDS 414
F+ G++ +VSISRE+A+ G + ++ KT+SQIK+E LG SEKPDW+TV A ++FIK DS
Sbjct: 506 FEREGRSTLSVSISREVASVG-RTDVRKTISQIKDERLGTSEKPDWITVSATVSFIKVDS 564
Query: 415 FCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTA 473
FCYTACP+MIGDRQC+KKVT +G+ +W+CDRC+Q +DECDYRY+LQ QIQD TGLTWVTA
Sbjct: 565 FCYTACPIMIGDRQCSKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHTGLTWVTA 624
Query: 474 FQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKI 533
FQE GEEI+G PAK LY LKYE QDD +F EIIR +F +++ +LKIKEE + DEQRV+
Sbjct: 625 FQEGGEEIMGIPAKRLYYLKYEEQDDEKFAEIIRKVLFTKFIMKLKIKEETFSDEQRVRS 684
Query: 534 TVIRADQVNYSSESRYLLDLISK 556
TV++A+ +N+SSESR+LL+L+ K
Sbjct: 685 TVVKAESINFSSESRFLLNLMEK 707
>gi|242066720|ref|XP_002454649.1| hypothetical protein SORBIDRAFT_04g034780 [Sorghum bicolor]
gi|241934480|gb|EES07625.1| hypothetical protein SORBIDRAFT_04g034780 [Sorghum bicolor]
Length = 652
Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/564 (59%), Positives = 426/564 (75%), Gaps = 23/564 (4%)
Query: 1 METIILDCEPIGNPKIFSES-ELTAQKTIPSNNLPQ-----PVRVNNYSAPNSGTFNLQN 54
+E + +CE IGNP + +S + + + N Q +N + P+ +Q
Sbjct: 101 LEVLAAECEIIGNPALPPDSGDSNSMRADQFNGALQNGSIAGTALNKVARPSDNAQVIQR 160
Query: 55 SGTFNSQNPGSFSTPNSGTFRAPNAGSIVRSFQPTVQPPYQPPPNFRNHGPILKNEAPAR 114
S NS N P + FQPTVQP Y+P PN+RNHG I+KN+APAR
Sbjct: 161 SMAGNSLN------------MVPRPSENAQVFQPTVQPSYRPAPNYRNHGTIMKNDAPAR 208
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
IIPI+ALNPYQGRWAIK RVTAKG++RRY+NA+GDGKVFSFDLLDSDGGEIR TCFN +V
Sbjct: 209 IIPISALNPYQGRWAIKGRVTAKGEIRRYHNAKGDGKVFSFDLLDSDGGEIRATCFNTLV 268
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
DRFYE++EVG+VY++S+G+LKPA+K++NHL NEWEIFLE ST++LC +E+ SIP Q+FS
Sbjct: 269 DRFYEVVEVGKVYVVSRGNLKPAKKDYNHLNNEWEIFLEFQSTIELCLDENSSIPAQRFS 328
Query: 235 FRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWG 294
F I +IE +ENN+IVDVIG+V SVNPS I RKNGME Q+R + LKDTSGRSVELT+WG
Sbjct: 329 FSSIDKIEDSENNAIVDVIGVVTSVNPSTTIQRKNGMEAQKRTITLKDTSGRSVELTMWG 388
Query: 295 DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREW 354
DFCN+EG +LQEMV+ G FPVL+VK+GKVND+SGKS+GTI S+QL INPD AEAH LR+W
Sbjct: 389 DFCNREGLQLQEMVEYGVFPVLAVKAGKVNDYSGKSVGTISSSQLLINPDLAEAHSLRQW 448
Query: 355 FDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDS 414
FD GG++A+T SISR+ ++NEI KT++QIK++GLG +KPDWVTV+A +TFIK+D
Sbjct: 449 FDCGGRDASTQSISRDFTPSASRNEIRKTIAQIKDDGLGMGDKPDWVTVKATVTFIKTDP 508
Query: 415 FCYTACPLMIGDRQCNKKVTQ--SGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVT 472
FCYTACP ++GDRQC KKVT+ SGN W CD+CNQE ECDYRYLLQ IQD TG T T
Sbjct: 509 FCYTACPNVVGDRQCGKKVTKSDSGN-WLCDKCNQEFPECDYRYLLQLNIQDHTGTTSAT 567
Query: 473 AFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVK 532
AFQE G+E+LGC A+EL M K +D R+ ++ ++ YL RLK+KEE YGDE+RVK
Sbjct: 568 AFQEVGQELLGCSARELNMFKE--NEDPRYTAVLIHCLYQNYLLRLKVKEEQYGDERRVK 625
Query: 533 ITVIRADQVNYSSESRYLLDLISK 556
TV++ ++V+ S+ES++LLD IS+
Sbjct: 626 NTVVKVERVDPSAESKFLLDSISR 649
>gi|224074474|ref|XP_002304377.1| predicted protein [Populus trichocarpa]
gi|222841809|gb|EEE79356.1| predicted protein [Populus trichocarpa]
Length = 701
Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/515 (60%), Positives = 406/515 (78%), Gaps = 15/515 (2%)
Query: 43 SAPNSGTFNLQNSGTFNSQNPGSFSTPNSGTFRAPNAGSIVRSFQPTVQPPYQPPPNFRN 102
S P+SG + QN+G N + P+ GS R Q Q QPPP + N
Sbjct: 46 SVPSSGLYVNQNAGYLNPRP----------EISQPHMGSYSRPPQSAYQ---QPPPMYSN 92
Query: 103 HGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDG 162
GP+ +NEAP RIIPI ALNPYQGRW IKARVTAKG+LR YNN RGDGKVFSFDLLDSDG
Sbjct: 93 RGPVARNEAPPRIIPITALNPYQGRWTIKARVTAKGELRHYNNTRGDGKVFSFDLLDSDG 152
Query: 163 GEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCT 222
GEIRVTCFN V D+FY IE GRVYLISKG+LKPAQKNFNHL+++ EIFLE+TST+ C
Sbjct: 153 GEIRVTCFNQVADQFYHQIEAGRVYLISKGNLKPAQKNFNHLRHDLEIFLESTSTIQPCF 212
Query: 223 EEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKD 282
E+D++IPKQQF FR IS++E ENNS+VDVIG+V S+ P+ ++RKNG ETQ+R L LKD
Sbjct: 213 EDDNTIPKQQFHFRPISDVEDMENNSVVDVIGVVTSIAPTTSLMRKNGTETQKRTLQLKD 272
Query: 283 TSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFIN 342
SGRSVELTLWG+FCN EGQ+LQ + D G FPVL+VKSG++++FSGK++GTI ++QLFI
Sbjct: 273 MSGRSVELTLWGNFCNAEGQRLQHICDSGGFPVLAVKSGRISEFSGKAVGTISTSQLFIE 332
Query: 343 PDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVT 402
PD EA+ L+EWFD G+N ++SISRE + G ++++ KT+SQIK+E LG SEKPDW+T
Sbjct: 333 PDSPEANRLKEWFDRDGRNTPSLSISRETSTLG-RSDVMKTISQIKDERLGTSEKPDWIT 391
Query: 403 VRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQ 461
V A + ++KSD+FCYTACP+M G+R CNKKVT +G+ +W+C++C+Q +DECDYRY+LQ Q
Sbjct: 392 VPATVIYVKSDNFCYTACPIMSGERPCNKKVTNNGDGKWRCEKCDQSVDECDYRYILQFQ 451
Query: 462 IQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIK 521
IQD TG++WVTAFQE GEEI+G AK+L+ LK+E QDD F +++R +F++Y+F+LK+K
Sbjct: 452 IQDHTGISWVTAFQECGEEIMGISAKDLHYLKHEQQDDEGFSKVLRQVLFSRYVFKLKVK 511
Query: 522 EELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
EE + DEQRVK TV+++++VNYSS+SR LLD++ K
Sbjct: 512 EETFSDEQRVKSTVVKSEKVNYSSQSRLLLDMMEK 546
>gi|293331519|ref|NP_001169500.1| uncharacterized protein LOC100383373 [Zea mays]
gi|224029699|gb|ACN33925.1| unknown [Zea mays]
Length = 656
Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/566 (59%), Positives = 427/566 (75%), Gaps = 25/566 (4%)
Query: 1 METIILDCEPIGNPKIFSESELTAQKTI--------PSNNLPQPVRVNNYSAPNSGTFNL 52
ME ++ +CE IGNP + ES ++ ++ P N +N P+ +
Sbjct: 103 MEVLVAECEIIGNPALPPESGDSSSNSLRADQFNGAPPNGSMAGSTLNKVIKPSDNAPVI 162
Query: 53 QNSGTFNSQNPGSFSTPNSGTFRAPNAGSIVRSFQPTVQPPYQPPPNFRNHGPILKNEAP 112
Q S T NS N P + FQPTVQP Y+P P +R+HG I+KN+AP
Sbjct: 163 QRSMTGNSLN------------MVPRPSDNAQVFQPTVQPSYRPAPKYRSHGTIMKNDAP 210
Query: 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
ARIIPI ALNPYQGRWAIKARVTAKG++RRY+NA+GDGKVFSFDLLD+DGGEIR TCFNA
Sbjct: 211 ARIIPIPALNPYQGRWAIKARVTAKGEIRRYHNAKGDGKVFSFDLLDTDGGEIRATCFNA 270
Query: 173 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQ 232
+VDRFYE++EVG+VY++S+G+LKPA+K++NHL NEWEIFLE ST++LC +E+ SIP Q+
Sbjct: 271 LVDRFYEVVEVGKVYVVSRGNLKPAKKDYNHLNNEWEIFLEPQSTIELCLDENSSIPAQR 330
Query: 233 FSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTL 292
FSF I +IE++ENN+IVDVIG+V SVNPS I RKNGME Q+R + L D SGRSVELT+
Sbjct: 331 FSFSSIDKIENSENNAIVDVIGVVTSVNPSTTIQRKNGMEAQKRTITLNDMSGRSVELTM 390
Query: 293 WGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELR 352
WGDFCN+EG +LQEMV+ G FPVL+VK+GKVND+SGKS+GTI S+QL INPD AEAH LR
Sbjct: 391 WGDFCNREGSQLQEMVECGAFPVLAVKAGKVNDYSGKSVGTISSSQLHINPDLAEAHSLR 450
Query: 353 EWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKS 412
+WFD GG++A+T SISR+ + NE+ KTV+QIK++GLG +KPDWVTV+A I+FIK+
Sbjct: 451 QWFDCGGRDASTQSISRDFTPSASWNEVRKTVAQIKDDGLGMGDKPDWVTVKAAISFIKT 510
Query: 413 DSFCYTACPLMIGDRQCNKKVTQ--SGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTW 470
DSFCYTACP +IGDRQC KKVT+ SGN W CD+CNQE ECDYRYLLQ IQD TG T
Sbjct: 511 DSFCYTACPNVIGDRQCGKKVTKSDSGN-WLCDKCNQEFPECDYRYLLQLNIQDHTGTTS 569
Query: 471 VTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQR 530
VTAFQ+ G+EILGC A+EL + K D R+ +++ + ++ YLFRLK+KEE YGD ++
Sbjct: 570 VTAFQDRGQEILGCSARELNIFKE--NKDPRYTDVLINCLYQNYLFRLKVKEEQYGDVRQ 627
Query: 531 VKITVIRADQVNYSSESRYLLDLISK 556
VK TV + ++V+ +ES++LLD IS+
Sbjct: 628 VKNTVAKVERVDPLAESKFLLDSISR 653
>gi|413924352|gb|AFW64284.1| hypothetical protein ZEAMMB73_597518 [Zea mays]
Length = 761
Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/566 (59%), Positives = 427/566 (75%), Gaps = 25/566 (4%)
Query: 1 METIILDCEPIGNPKIFSESELTAQKTI--------PSNNLPQPVRVNNYSAPNSGTFNL 52
ME ++ +CE IGNP + ES ++ ++ P N +N P+ +
Sbjct: 208 MEVLVAECEIIGNPALPPESGDSSSNSLRADQFNGAPPNGSMAGSTLNKVIKPSDNAPVI 267
Query: 53 QNSGTFNSQNPGSFSTPNSGTFRAPNAGSIVRSFQPTVQPPYQPPPNFRNHGPILKNEAP 112
Q S T NS N P + FQPTVQP Y+P P +R+HG I+KN+AP
Sbjct: 268 QRSMTGNSLN------------MVPRPSDNAQVFQPTVQPSYRPAPKYRSHGTIMKNDAP 315
Query: 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
ARIIPI ALNPYQGRWAIKARVTAKG++RRY+NA+GDGKVFSFDLLD+DGGEIR TCFNA
Sbjct: 316 ARIIPIPALNPYQGRWAIKARVTAKGEIRRYHNAKGDGKVFSFDLLDTDGGEIRATCFNA 375
Query: 173 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQ 232
+VDRFYE++EVG+VY++S+G+LKPA+K++NHL NEWEIFLE ST++LC +E+ SIP Q+
Sbjct: 376 LVDRFYEVVEVGKVYVVSRGNLKPAKKDYNHLNNEWEIFLEPQSTIELCLDENSSIPAQR 435
Query: 233 FSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTL 292
FSF I +IE++ENN+IVDVIG+V SVNPS I RKNGME Q+R + L D SGRSVELT+
Sbjct: 436 FSFSSIDKIENSENNAIVDVIGVVTSVNPSTTIQRKNGMEAQKRTITLNDMSGRSVELTM 495
Query: 293 WGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELR 352
WGDFCN+EG +LQEMV+ G FPVL+VK+GKVND+SGKS+GTI S+QL INPD AEAH LR
Sbjct: 496 WGDFCNREGSQLQEMVECGAFPVLAVKAGKVNDYSGKSVGTISSSQLHINPDLAEAHSLR 555
Query: 353 EWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKS 412
+WFD GG++A+T SISR+ + NE+ KTV+QIK++GLG +KPDWVTV+A I+FIK+
Sbjct: 556 QWFDCGGRDASTQSISRDFTPSASWNEVRKTVAQIKDDGLGMGDKPDWVTVKAAISFIKT 615
Query: 413 DSFCYTACPLMIGDRQCNKKVTQ--SGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTW 470
DSFCYTACP +IGDRQC KKVT+ SGN W CD+CNQE ECDYRYLLQ IQD TG T
Sbjct: 616 DSFCYTACPNVIGDRQCGKKVTKSDSGN-WLCDKCNQEFPECDYRYLLQLNIQDHTGTTS 674
Query: 471 VTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQR 530
VTAFQ+ G+EILGC A+EL + K D R+ +++ + ++ YLFRLK+KEE YGD ++
Sbjct: 675 VTAFQDRGQEILGCSARELNIFKE--NKDPRYTDVLINCLYQNYLFRLKVKEEQYGDVRQ 732
Query: 531 VKITVIRADQVNYSSESRYLLDLISK 556
VK TV + ++V+ +ES++LLD IS+
Sbjct: 733 VKNTVAKVERVDPLAESKFLLDSISR 758
>gi|255557709|ref|XP_002519884.1| replication factor A 1, rfa1, putative [Ricinus communis]
gi|223540930|gb|EEF42488.1| replication factor A 1, rfa1, putative [Ricinus communis]
Length = 901
Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/607 (54%), Positives = 431/607 (71%), Gaps = 69/607 (11%)
Query: 8 CEPIGNPKIFSESELTAQKTI----PSNNLP--QPVRVNNYSA----------PNSGTFN 51
C IGNP ++AQKT+ PS + P P +Y + PN +
Sbjct: 129 CAIIGNP-------VSAQKTLGPSHPSTDQPVSSPANPQSYGSGSPAGGMVENPNLNVSS 181
Query: 52 LQN---SGTFNSQNPGSFST----------------PNSGTFRAPNAGSIVRSF------ 86
LQN + S +P S+ + P SG P + S+ RS+
Sbjct: 182 LQNPRMNQLHGSSHPSSYDSGRYVTTNAPPCHLKAEPGSGL---PGSASMNRSYNEQSAG 238
Query: 87 ---------QPTVQPPY-------QPPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAI 130
Q T PY QPPP + N GP+ KNEAP RI+PI+ALNPYQGRW I
Sbjct: 239 FCNPRPEIPQTTGTYPYPPCPAYQQPPPMYSNRGPVAKNEAPPRIMPISALNPYQGRWTI 298
Query: 131 KARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLIS 190
KARVTAKG+LR YNN RGDGKVFSFDLLDSDGGEIRV CFN V D+FY IE G+VYLIS
Sbjct: 299 KARVTAKGELRHYNNVRGDGKVFSFDLLDSDGGEIRVICFNTVADQFYHQIEAGKVYLIS 358
Query: 191 KGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIV 250
+G+LKPAQK FNHL N+ EIFLE+ S + C E+DD+IP+QQF FR ISE+E +NNS+V
Sbjct: 359 RGNLKPAQKTFNHLHNDLEIFLESNSVIQPCFEDDDAIPRQQFHFRPISEVEGMDNNSVV 418
Query: 251 DVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDV 310
D+IG+V + P I+RKNG ETQ+R L LKD SGRSVELTLWG+FCN EGQ+LQ M D
Sbjct: 419 DIIGMVSCITPVASIMRKNGTETQKRTLQLKDNSGRSVELTLWGNFCNAEGQRLQNMCDS 478
Query: 311 GFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISRE 370
G FPVL+VKSG+V+DF+GK++GTI ++QLFI PD EA L+EWF+ G+N +VSISRE
Sbjct: 479 GGFPVLAVKSGRVSDFNGKAVGTISTSQLFIEPDIPEARRLKEWFEKEGRNTPSVSISRE 538
Query: 371 IAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCN 430
+++ G ++EIHKT+SQIK+E LG SEKPDW+T+ A + +IK+D+FCYTACP+M GDR C+
Sbjct: 539 LSSVG-RSEIHKTISQIKDEKLGTSEKPDWITINATVIYIKADNFCYTACPIMAGDRPCS 597
Query: 431 KKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKEL 489
KKVT +G+ +W+C++C+Q +DECDYRY+LQ Q+QD TG+TWVTAFQESGEEI+G AK+L
Sbjct: 598 KKVTNNGDGKWRCEKCDQSMDECDYRYILQLQLQDHTGITWVTAFQESGEEIMGISAKDL 657
Query: 490 YMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRY 549
+ +KYE QDD F +I+R +F++++ +LK+KEE + DEQRVK TV+RA++VN+SS+SR+
Sbjct: 658 HFMKYENQDDESFSKILRQVLFSKFVIKLKVKEETFSDEQRVKSTVVRAEKVNHSSQSRF 717
Query: 550 LLDLISK 556
LL+++ K
Sbjct: 718 LLEIMEK 724
>gi|357113420|ref|XP_003558501.1| PREDICTED: LOW QUALITY PROTEIN: replication protein A 70 kDa
DNA-binding subunit-like [Brachypodium distachyon]
Length = 645
Score = 654 bits (1687), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/564 (56%), Positives = 423/564 (75%), Gaps = 21/564 (3%)
Query: 1 METIILDCEPIGNPKIFSESELTAQKTIPSNNLPQPVRVN------NYSAPNSGTFNLQN 54
M + +C IGNP I SE+ + Q + + N + PN Q
Sbjct: 92 MTVLRAECAIIGNPTITSETVSSNQNHLRVEQFNGTRQYGLTAGNPNLTRPNGNVPVFQP 151
Query: 55 SGTFNSQNPGSFSTPNSGTFRAPNAGSIVRSFQPTVQPPYQPPPNFRNHGPILKNEAPAR 114
S N+ N TP + + P +FQPT QP Y+P P+++NHG I KNEAPAR
Sbjct: 152 SMAANTLN-----TPTRLSGQTP-------AFQPTAQPSYRPAPSYKNHGAIAKNEAPAR 199
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
IIPI+ LNPYQGRWAIK RVTAKGD+RRY+NA+G+GKVFSFDLLDSDGGEIRVTCFNA++
Sbjct: 200 IIPISTLNPYQGRWAIKGRVTAKGDIRRYHNAKGEGKVFSFDLLDSDGGEIRVTCFNALL 259
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
DRFYE++EVG+VY++S+G+LKPAQKN+NHL N WEI L+ S+VDLC +E+ SIP Q+F+
Sbjct: 260 DRFYEVVEVGKVYVVSRGNLKPAQKNYNHLNNXWEITLDNGSSVDLCLDENSSIPSQRFN 319
Query: 235 FRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWG 294
FR ISE+E N +I+D+IG+VISV+P + +KNGMETQ+R++NLKD SGRSV++T+WG
Sbjct: 320 FRPISEVEDTANTAILDIIGVVISVSPCTTLQKKNGMETQKRVINLKDMSGRSVDVTIWG 379
Query: 295 DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREW 354
+FCN+EG +LQE+V+ G FPVL+VK+G+VNDF GKS+GTI S+QL I+PD AEAH LR+W
Sbjct: 380 EFCNREGSQLQEIVECGGFPVLAVKTGRVNDFGGKSVGTISSSQLLIDPDIAEAHSLRQW 439
Query: 355 FDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDS 414
FDSGG++A+T SIS ++ ++N+I T++QIK+EGLG +KPDWVTV+A I F K+++
Sbjct: 440 FDSGGRDASTQSISTDVIPAASRNDIRMTIAQIKDEGLGMGDKPDWVTVKASIIFFKNEN 499
Query: 415 FCYTACPLMIGDRQCNKKVTQ-SGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTA 473
FCYTACP GDRQCNKKVT+ + W CD+CN+E ECDYRYLLQ QIQD +G TWVTA
Sbjct: 500 FCYTACPNKEGDRQCNKKVTKGTSGLWFCDKCNREFTECDYRYLLQLQIQDHSGTTWVTA 559
Query: 474 FQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKI 533
FQESG+++LGC A++L K E +D RF E + +F +YL RLKIKEE YGDE+RVK
Sbjct: 560 FQESGQDLLGCSAQDLNRFKEE--EDPRFAETMLQCLFQEYLLRLKIKEETYGDERRVKN 617
Query: 534 TVIRADQVNYSSESRYLLDLISKS 557
T+++ ++ + + ES+YLLD IS+S
Sbjct: 618 TLVKVERFDPAGESKYLLDSISRS 641
>gi|326517527|dbj|BAK03682.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 654
Score = 648 bits (1672), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/572 (56%), Positives = 420/572 (73%), Gaps = 35/572 (6%)
Query: 1 METIILDCEPIGNPKIFSESELTAQKT-------------IPSNNLPQPVRVNNYSAPNS 47
+ ++ +C+ IGNP I ESE + Q + + N P P R N N
Sbjct: 101 LTVLLAECDIIGNPVITPESESSNQNNPKVEQFNGARQYGLAAGN-PSPTRPNG----NV 155
Query: 48 GTFNLQNSGTFNSQNPGSFSTPNSGTFRAPNAGSIVRSFQPTVQPPYQPPPNFRNHGPIL 107
F +G+ S +TP + ++P FQPT QP Y+P P+++N G I
Sbjct: 156 PVFQPSVAGS-------SLNTPTRLSDKSP-------VFQPTAQPSYRPAPSYKNQGAIA 201
Query: 108 KNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRV 167
KNEAPARIIPI++LNPYQGRWAIK RVTAKGD+RRY+NA+GDGKVF+FDLLDSDGGEIRV
Sbjct: 202 KNEAPARIIPISSLNPYQGRWAIKGRVTAKGDIRRYHNAKGDGKVFNFDLLDSDGGEIRV 261
Query: 168 TCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDS 227
CFNA VDRFYE++EVG+VY++S+G+LKPAQ+N+NHL +EWEI LE S+VDLC +ED S
Sbjct: 262 ACFNAHVDRFYEVVEVGKVYVVSRGNLKPAQRNYNHLNSEWEITLERDSSVDLCPDEDSS 321
Query: 228 IPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRS 287
IP QQF+FR ISEIE +++D+IG+ ISV+PS + +KNG ET +RI+ LKD SGRS
Sbjct: 322 IPSQQFNFRPISEIEDTPTGTVLDIIGVAISVSPSTTVQKKNGTETLKRIIGLKDMSGRS 381
Query: 288 VELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAE 347
V+LT+WGDFCN+EG +LQEMV+ G FPVL VK+G+VNDF+GK IGTI S+QL I+PD +E
Sbjct: 382 VDLTMWGDFCNREGSQLQEMVERGVFPVLGVKTGRVNDFNGKCIGTISSSQLLIDPDLSE 441
Query: 348 AHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFI 407
AH LR+WFD GG++A+T SISR+ ++NE+ T+++IK+EGLG +KPDWVTV+A I
Sbjct: 442 AHTLRQWFDGGGRDASTQSISRDHTPAASRNEVRMTIAKIKDEGLGMGDKPDWVTVKASI 501
Query: 408 TFIKSDSFCYTACPLMIGDRQCNKKVTQ-SGNRWQCDRCNQEIDECDYRYLLQAQIQDQT 466
F KSD+FCYTACP GDRQCNKKVT+ + W CDRC++E ECDYRYLLQ QIQD +
Sbjct: 502 IFFKSDNFCYTACPTKEGDRQCNKKVTKGTSGLWVCDRCDKEFPECDYRYLLQLQIQDHS 561
Query: 467 GLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYG 526
G WVTAFQE+ +E+LGC A L ++ Y+ D RF EI+ S +F YL RLK+KEE Y
Sbjct: 562 GTAWVTAFQETAQELLGCSA--LDLITYKENGDPRFAEIMLSCLFQDYLLRLKVKEETYS 619
Query: 527 DEQRVKITVIRADQVNYSSESRYLLDLISKSF 558
DE+RVK T+++ ++ + ++ESR+LLDL+S+S
Sbjct: 620 DERRVKNTLVKVERFDPAAESRHLLDLLSRSM 651
>gi|357137873|ref|XP_003570523.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Brachypodium distachyon]
Length = 628
Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/557 (57%), Positives = 411/557 (73%), Gaps = 30/557 (5%)
Query: 1 METIILDCEPIGNPKIFSESELTAQKTIPSNNLPQPVRVNNYSAPNSGTFNLQNSGTFNS 60
M + +C+ IGNP I E+ L P+ N + N P S
Sbjct: 97 MTVLRAECDIIGNPTITPETRL------PNQNHSGAEQFNGIRQP--------------S 136
Query: 61 QNPGSFSTPNSGTFRAPNAGSIVRSFQPTVQPPYQPPPNFRNHGPILKNEAPARIIPIAA 120
S +TP +AP FQPT QP Y+P P+++NHGPI KNEAPARIIPI++
Sbjct: 137 VAANSLNTPTMLGHQAP-------VFQPTAQPSYRPAPSYKNHGPIAKNEAPARIIPISS 189
Query: 121 LNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEI 180
LNPYQGRWAIK RVTAKGD+RRY+NA+G+GKVF+FDLLDSDGGEIRVTCFN +VDRFYE+
Sbjct: 190 LNPYQGRWAIKGRVTAKGDIRRYHNAKGEGKVFNFDLLDSDGGEIRVTCFNDLVDRFYEV 249
Query: 181 IEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISE 240
+EVG+VY++S+G+LKPAQKNFNHL NEWEI L+ S+VDLC +E+ SIP Q+F+FR ISE
Sbjct: 250 VEVGKVYVVSRGNLKPAQKNFNHLNNEWEIVLDNGSSVDLCPDENSSIPSQRFNFRPISE 309
Query: 241 IESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKE 300
+E N +I+D+IG+VISV+P I +KNGMETQ+RI+NLKD SGRSV++T+WG+FCN+E
Sbjct: 310 VEDTPNATILDMIGVVISVSPCTTIQKKNGMETQKRIINLKDMSGRSVDVTMWGEFCNRE 369
Query: 301 GQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGK 360
G +LQE V+ G FPVL+VK+G+VNDF GKS+GTI S+QL I+PD EAH LR+WFD GG+
Sbjct: 370 GSQLQETVERGVFPVLAVKTGRVNDFGGKSVGTISSSQLLIDPDIVEAHSLRQWFDGGGR 429
Query: 361 NAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTAC 420
+A+T SISR+ ++N I KTV+QIK EGLG +KPDWVTV+A + F K+++FCYT+C
Sbjct: 430 DASTQSISRDATPAASRNAIRKTVAQIKEEGLGMEDKPDWVTVKASVIFFKNENFCYTSC 489
Query: 421 PLMIGDRQCNKKVTQ-SGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGE 479
P GDRQCNKKVT+ + W CD+CN+E ECDYRYLLQ QIQD +G WVTAFQE+G+
Sbjct: 490 PNKEGDRQCNKKVTKGTSGLWYCDKCNREFTECDYRYLLQLQIQDHSGTAWVTAFQEAGQ 549
Query: 480 EILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRAD 539
E+LG A +L K E +D RF E + +F YL RLK+KEE YGDE+RVK T+ + +
Sbjct: 550 ELLGVSASDLSRFKEE--EDPRFAETMLRCLFQDYLLRLKVKEETYGDERRVKNTLAKVE 607
Query: 540 QVNYSSESRYLLDLISK 556
+ + + ES+YLLD IS+
Sbjct: 608 RFDPAGESKYLLDTISR 624
>gi|356529769|ref|XP_003533460.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Glycine max]
Length = 894
Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/585 (55%), Positives = 409/585 (69%), Gaps = 36/585 (6%)
Query: 9 EPIGNPKIFSESELTAQKTIPSNNLPQ-----------PVRVNNYS-APNSGTFNLQNSG 56
EP+ PK T Q + S N PQ P R N S +P+ N SG
Sbjct: 112 EPVPAPKDAPTESATGQSGVTSGN-PQLLNSSSHTGGMPARPNVASPSPDHPKVNPSASG 170
Query: 57 TFNSQNPGSF---------STPNSGTFRAPNAG------SIVRSFQ-----PTVQPPY-Q 95
++S P ++ S P SG+ N G R Q P QP Y Q
Sbjct: 171 VYSSNAPPTYPKVEHGVSRSAPFSGSSGGQNTGFRNPQFEASRPLQNSYARPPQQPMYRQ 230
Query: 96 PPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSF 155
P P + N P+ +NEA RIIPIAALNPYQ W IKARVT KG+LR Y NARGDGKVFSF
Sbjct: 231 PSPMYTNRAPMGRNEAAPRIIPIAALNPYQSMWTIKARVTFKGELRHYTNARGDGKVFSF 290
Query: 156 DLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEAT 215
DLLDSDGGEIR TCFNAV D+FY +IE G+VYLIS+GS+KPAQKNFNHL+N+ E+ L+
Sbjct: 291 DLLDSDGGEIRATCFNAVADQFYNVIEAGKVYLISRGSIKPAQKNFNHLRNDQELTLDVA 350
Query: 216 STVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQR 275
S + C +++DSIP Q F++R ISEIES ENNSIVDVIG+V S++P+ I+RKNG E Q+
Sbjct: 351 SIIQPCLDDNDSIPSQTFNYRPISEIESLENNSIVDVIGVVTSISPTASIMRKNGTEVQK 410
Query: 276 RILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIP 335
R L LKD SGRSVELTLWG+FC EGQ+LQ + D G FPVL+ K+ +VNDF+GKS+GTI
Sbjct: 411 RTLQLKDMSGRSVELTLWGNFCIVEGQRLQTICDAGEFPVLATKAVRVNDFNGKSVGTIA 470
Query: 336 STQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRS 395
++QL++ PDF EA L+ WF++ GK+ T+SISREI+ G K ++ KT+SQIK+E LG S
Sbjct: 471 TSQLYVEPDFPEACTLKRWFENEGKSVPTLSISREISNLG-KTDVRKTISQIKDEKLGTS 529
Query: 396 EKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDY 454
EKPDW++V A ++ IK D+FCY CPL IGDRQCNKKVT + + W C+RCNQ ID CD+
Sbjct: 530 EKPDWISVFAAVSHIKVDNFCYPGCPLKIGDRQCNKKVTNNADGTWHCERCNQSIDTCDF 589
Query: 455 RYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQY 514
RYLL QIQD TG+TWVTAFQESGEEI+G PAK+LY +KYE QDD +F EI +F +Y
Sbjct: 590 RYLLSMQIQDHTGITWVTAFQESGEEIMGIPAKDLYYMKYEEQDDDKFSEIFHKVLFTEY 649
Query: 515 LFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKSFR 559
+F+L+IKEE Y DEQR+K T+++A++VN++S+SR L+LI R
Sbjct: 650 MFKLRIKEEFYSDEQRIKSTIVKAEKVNFASKSRVNLELIFNELR 694
>gi|15242405|ref|NP_199353.1| replication factor-A protein 1-like protein [Arabidopsis thaliana]
gi|9758730|dbj|BAB09168.1| replication protein A1-like [Arabidopsis thaliana]
gi|332007861|gb|AED95244.1| replication factor-A protein 1-like protein [Arabidopsis thaliana]
Length = 853
Score = 621 bits (1601), Expect = e-175, Method: Compositional matrix adjust.
Identities = 287/483 (59%), Positives = 379/483 (78%), Gaps = 5/483 (1%)
Query: 77 PNAGSIVRSFQPTVQPPYQP--PPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARV 134
P A + ++ VQ YQP PP + N GP+ +NEAP RI PIAALNPYQGRW IK RV
Sbjct: 259 PRAPTATTAYSRPVQSAYQPQQPPMYVNRGPVARNEAPPRINPIAALNPYQGRWTIKVRV 318
Query: 135 TAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSL 194
T+K DLRR+NN RG+GK+FSFDLLD+DGGEIRVTCFN VD+F++ I VG VYLIS+G+L
Sbjct: 319 TSKADLRRFNNPRGEGKLFSFDLLDADGGEIRVTCFNDAVDQFFDKIVVGNVYLISRGNL 378
Query: 195 KPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIG 254
KPAQKNFNHL N++EI L++ ST+ C E+D +IP+ F FR+I +IE+ ENNS DVIG
Sbjct: 379 KPAQKNFNHLPNDYEIHLDSASTIQPC-EDDGTIPRYHFHFRNIGDIENMENNSTTDVIG 437
Query: 255 IVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFP 314
IV S++P+V I+RKN E Q+R L LKD SGRSVE+T+WG+FCN EGQKLQ + D G FP
Sbjct: 438 IVSSISPTVAIMRKNLTEVQKRSLQLKDMSGRSVEVTMWGNFCNAEGQKLQNLCDSGVFP 497
Query: 315 VLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAG 374
VL++K+G++ +F+GK + TI ++Q FI PDF EA ELR+W++ G+NA SISRE +G
Sbjct: 498 VLALKAGRIGEFNGKQVSTIGASQFFIEPDFPEARELRQWYEREGRNAHFTSISREF-SG 556
Query: 375 GAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT 434
+ E+ K ++QIK+E LG SEKPDW+TV A I+F+K ++FCYTACP+M GDR C+KKVT
Sbjct: 557 VGRQEVRKVIAQIKDEKLGTSEKPDWITVCATISFMKVENFCYTACPIMNGDRPCSKKVT 616
Query: 435 QSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLK 493
+G+ W+C++C++ +DECDYRY+LQ Q+QD T LTW TAFQE+GEEI+G AK+LY +K
Sbjct: 617 NNGDGTWRCEKCDKCVDECDYRYILQIQLQDHTDLTWATAFQEAGEEIMGMSAKDLYYVK 676
Query: 494 YELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDL 553
YE QD+ +F +IIRS F +Y+F+LKIKEE Y DEQRVK TV++A+++NYSS +R++L+
Sbjct: 677 YENQDEEKFEDIIRSVAFTKYIFKLKIKEETYSDEQRVKATVVKAEKLNYSSNTRFMLEA 736
Query: 554 ISK 556
I K
Sbjct: 737 IDK 739
>gi|357459135|ref|XP_003599848.1| Replication protein A 70 kDa DNA-binding subunit [Medicago
truncatula]
gi|355488896|gb|AES70099.1| Replication protein A 70 kDa DNA-binding subunit [Medicago
truncatula]
Length = 813
Score = 618 bits (1593), Expect = e-174, Method: Compositional matrix adjust.
Identities = 292/465 (62%), Positives = 376/465 (80%), Gaps = 16/465 (3%)
Query: 105 PILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGE 164
P+++NE P IPIAAL+PY+G+WAIKARVT+KG LR YN+ G K FSFD+LDSDGGE
Sbjct: 120 PMVENEEP---IPIAALHPYKGKWAIKARVTSKGHLRHYNSPEGYLKAFSFDVLDSDGGE 176
Query: 165 IRVTCFNAVVDRFYEIIEVGRVYLISKGSLKP-AQKNFNHLKNEWEIFLEATSTVDLCTE 223
++VTC N V+D FYE+IEVG+VYLISK L P K+ HLK +WEI L + STV+LC +
Sbjct: 177 VQVTCLNDVIDSFYEVIEVGKVYLISKAGLIPVGSKDLKHLKIDWEIMLNSNSTVELCPD 236
Query: 224 EDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDT 283
ED SIP +FSFR IS+IE+ E+N+I+DVIG+V SVN SV + R+N +E ++RILNLKD
Sbjct: 237 EDGSIPMHKFSFRSISDIENIESNTILDVIGVVTSVNSSVLMSRENALEMRKRILNLKDN 296
Query: 284 SGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINP 343
SGRSVELTLWG+ CN+EGQ+L+++VD G FPVL+VK+GKV +F GKSI IP ++LF+NP
Sbjct: 297 SGRSVELTLWGELCNREGQELKDIVDAGGFPVLAVKAGKVIEFRGKSINAIPISRLFVNP 356
Query: 344 DFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTV 403
DF EA LR WFD GK++A+ SIS++I+ GG KNE+ KTVSQIK+EGLG ++KPDW+T
Sbjct: 357 DFPEAQSLRLWFDQDGKDSASSSISKDISYGGPKNELRKTVSQIKDEGLGCTDKPDWITT 416
Query: 404 RAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSG------------NRWQCDRCNQEIDE 451
RA I+F+K+D FCYTACP+MIGDR+CNKKVT+SG RW+CD CNQE D
Sbjct: 417 RATISFMKTDVFCYTACPVMIGDRRCNKKVTRSGERCSKKVTKTVNTRWKCDTCNQEFDV 476
Query: 452 CDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVF 511
C+YRY+LQAQI D TGLT VTAF E+GE+I+G AK+LY+LKYE +DD RF +II+S +F
Sbjct: 477 CEYRYILQAQIVDHTGLTCVTAFNEAGEDIMGYSAKDLYVLKYEQEDDERFRDIIKSILF 536
Query: 512 NQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
NQ++FRLKI++EL G+EQ+VKI V++AD+VNYS+ES+Y+LDLISK
Sbjct: 537 NQFVFRLKIQKELCGEEQKVKIIVVKADKVNYSAESKYMLDLISK 581
>gi|297800136|ref|XP_002867952.1| hypothetical protein ARALYDRAFT_329623 [Arabidopsis lyrata subsp.
lyrata]
gi|297313788|gb|EFH44211.1| hypothetical protein ARALYDRAFT_329623 [Arabidopsis lyrata subsp.
lyrata]
Length = 801
Score = 616 bits (1589), Expect = e-174, Method: Compositional matrix adjust.
Identities = 288/498 (57%), Positives = 386/498 (77%), Gaps = 9/498 (1%)
Query: 67 STPNSGTFRAPNAGSIVRSFQPTVQPPYQ-------PPPNFRNHGPILKNEAPARIIPIA 119
+TP++ P+AG V PP PPP + N GP+++NEAP RIIPI
Sbjct: 180 TTPSTRVDSNPSAGHGVSRQDHARDPPTSYPRQPQPPPPMYANRGPVVRNEAPPRIIPIN 239
Query: 120 ALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYE 179
AL+PY GRW IKARVT K L++Y+N RG+GKVF+FDLLD+DGGEIRVTCFNAV D+F++
Sbjct: 240 ALSPYSGRWTIKARVTNKAALKQYSNPRGEGKVFNFDLLDADGGEIRVTCFNAVADQFFD 299
Query: 180 IIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHIS 239
I VG +YLIS+GSL+PAQKNFNHL N++EI L+ ST+ C EED +IP+QQF FR I
Sbjct: 300 QIVVGNLYLISRGSLRPAQKNFNHLPNDYEIMLDNASTIKQCYEEDAAIPRQQFHFRTIG 359
Query: 240 EIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNK 299
+IES ENNSI+DVIGIV S++P+V I RKNG T +R L LKD SGRSVE+T+WG+FCN
Sbjct: 360 DIESMENNSIIDVIGIVSSISPTVTITRKNGTATPKRSLQLKDMSGRSVEVTMWGNFCNA 419
Query: 300 EGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGG 359
EGQ+LQ + D G FPVL+VK+G++++F+GK++ TI S+QLFI+PDF EAH+L++WF+ G
Sbjct: 420 EGQRLQNLCDSGEFPVLAVKAGRISEFNGKTVSTIGSSQLFIDPDFVEAHKLKDWFEREG 479
Query: 360 KNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTA 419
K+ +S+SRE +G + ++ KT+SQIK+E LG SEKPDW+TV A I ++K ++FCYTA
Sbjct: 480 KSVPCISLSREF-SGSGRVDVRKTISQIKDEKLGTSEKPDWITVSATIIYMKVENFCYTA 538
Query: 420 CPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESG 478
CP+M GDR C+KKVT +G+ W+C++C++ +DECDYRY+LQ QIQD T LTWVTAFQE+G
Sbjct: 539 CPIMNGDRPCSKKVTDNGDGTWRCEKCDKSVDECDYRYILQLQIQDHTDLTWVTAFQEAG 598
Query: 479 EEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRA 538
EEI+G AK+LY +KYE D+ +F +IIR F +Y+F+LK+KEE + DEQRVK TV++
Sbjct: 599 EEIMGISAKDLYYVKYEHNDEEKFEDIIRKVAFTKYIFKLKVKEETFSDEQRVKATVVKV 658
Query: 539 DQVNYSSESRYLLDLISK 556
D++NYSS++R +LD + K
Sbjct: 659 DKLNYSSDTRTILDAMDK 676
>gi|297846122|ref|XP_002890942.1| hypothetical protein ARALYDRAFT_313748 [Arabidopsis lyrata subsp.
lyrata]
gi|297336784|gb|EFH67201.1| hypothetical protein ARALYDRAFT_313748 [Arabidopsis lyrata subsp.
lyrata]
Length = 822
Score = 616 bits (1588), Expect = e-173, Method: Compositional matrix adjust.
Identities = 281/483 (58%), Positives = 381/483 (78%), Gaps = 5/483 (1%)
Query: 77 PNAGSIVRSFQPTVQPPYQP--PPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARV 134
P A ++ VQ YQP PP + N GP+ +NEAP RIIPIAALNPYQGRW IK RV
Sbjct: 224 PRAPPATTAYSRPVQSAYQPQQPPMYVNRGPVARNEAPPRIIPIAALNPYQGRWTIKVRV 283
Query: 135 TAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSL 194
++K +LRR+NN RG+GK+FSFDLLD+DGGEIRVTCFN VD+F++ I VG VYLIS+G+L
Sbjct: 284 SSKAELRRFNNPRGEGKLFSFDLLDADGGEIRVTCFNDAVDQFFDQIVVGNVYLISRGNL 343
Query: 195 KPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIG 254
KPAQKN+NHL N++EI L++ ST+ C E+D +IP+ QF FR+IS+IE+ E+NS+ D+IG
Sbjct: 344 KPAQKNYNHLPNDYEIHLDSASTIQRC-EDDGTIPRNQFHFRNISDIENMESNSMTDLIG 402
Query: 255 IVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFP 314
IV S+ +VPI+RKNG E +R L LKD SGRSVE+T+WG+FC+ EGQ+LQ + D G FP
Sbjct: 403 IVSSIGTTVPIMRKNGTEVDKRALQLKDMSGRSVEVTMWGNFCSAEGQQLQNLCDSGVFP 462
Query: 315 VLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAG 374
VL++K+G++ +F+GK + TI S+Q F+ PDF EA ELR+W++ G+NA SISRE +G
Sbjct: 463 VLALKAGRIGEFNGKQVSTIGSSQFFVEPDFPEARELRQWYEREGRNANFTSISREF-SG 521
Query: 375 GAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT 434
+ E+ K ++QIK+E LG SEKPDW+TV A I+F+K ++FCYTACP+M GDR C+KKVT
Sbjct: 522 VGRQEVRKVITQIKDEKLGTSEKPDWITVCATISFMKVENFCYTACPIMNGDRPCSKKVT 581
Query: 435 QSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLK 493
+G+ W+C++C++ +DECDYRY+LQ Q+QD TGLTW TAFQE+GEEI+G AK+LY +K
Sbjct: 582 NNGDGTWRCEKCDKCVDECDYRYILQIQLQDHTGLTWATAFQEAGEEIMGMSAKDLYYVK 641
Query: 494 YELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDL 553
YE Q++ +F +IIRS F +Y+F+LKIKEE Y DEQRVK TV++A+++NY+S +R +L+
Sbjct: 642 YENQEEEKFEDIIRSVAFTKYIFKLKIKEETYSDEQRVKATVVKAEKLNYASNTRCMLEA 701
Query: 554 ISK 556
+ K
Sbjct: 702 MDK 704
>gi|168050100|ref|XP_001777498.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671116|gb|EDQ57673.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 632
Score = 610 bits (1572), Expect = e-172, Method: Compositional matrix adjust.
Identities = 290/501 (57%), Positives = 385/501 (76%), Gaps = 15/501 (2%)
Query: 61 QNPGSFSTPNSGTFRAPNAGSIVRSFQPTVQP---------PYQPPPNFRNHGPILKNEA 111
Q P STP+S T A N+GS + QP YQP P + N GPI+KNEA
Sbjct: 137 QPPPRISTPSSATVSA-NSGSRA-GYGQQGQPQNSYGRPMAAYQPAPVYGNRGPIVKNEA 194
Query: 112 PARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFN 171
PARIIPIAALNPYQGRW IKARVT+KG++RR++NA+G+GKVFSFD+LD+DGGEIR TCFN
Sbjct: 195 PARIIPIAALNPYQGRWTIKARVTSKGEIRRFHNAKGEGKVFSFDMLDADGGEIRATCFN 254
Query: 172 AVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQ 231
VVD+F++ IEVG+VYLISKGSLK AQKNFNHLKN+WEIFLE+ ST++ C +ED SIP+Q
Sbjct: 255 NVVDQFHDRIEVGKVYLISKGSLKAAQKNFNHLKNDWEIFLESQSTIEPCYDEDSSIPQQ 314
Query: 232 QFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELT 291
+ FR ISE+ + ENN+++D+IG+V+S+ P+V I RKNG+ETQ+R L LKD S RSVELT
Sbjct: 315 HYDFRPISEVATLENNAMIDIIGVVMSITPTVTITRKNGLETQKRSLQLKDMSNRSVELT 374
Query: 292 LWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHEL 351
+WG+FCNKEGQ+LQ++ D G PVL+VK+G+V+DFSGKS+GTI STQL INPD EA ++
Sbjct: 375 MWGNFCNKEGQELQDLCDSGANPVLAVKAGRVSDFSGKSVGTISSTQLVINPDHPEARKV 434
Query: 352 REWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIK 411
R+WF+ G N+ TV +SRE G + E KTV+ IK+EGLGR +KPDW+T+RA + +IK
Sbjct: 435 RDWFNREGMNSTTVFLSREGGG-GGRLEQRKTVAAIKDEGLGRGDKPDWITIRATVFYIK 493
Query: 412 SDSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQTGLTW 470
++FCY+ACPL + +QC KKVT +G+ W+CDRC++ + ECDYRYLL Q+QD TG TW
Sbjct: 494 PENFCYSACPLEVNGKQCMKKVTNNGDGTWRCDRCDRSVPECDYRYLLSIQVQDHTGPTW 553
Query: 471 VTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQR 530
+T FQE+GEE++ AKEL++ + + RF E I+ F +++F+LK+KEE Y DEQR
Sbjct: 554 ITVFQETGEELMHHTAKELFL--WSQDEPQRFSEAIQKLTFMKHIFKLKVKEETYNDEQR 611
Query: 531 VKITVIRADQVNYSSESRYLL 551
K T+++ D +++ SES+ +L
Sbjct: 612 TKSTLVKVDPMDWISESKLML 632
>gi|168046036|ref|XP_001775481.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673151|gb|EDQ59678.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 626
Score = 602 bits (1553), Expect = e-169, Method: Compositional matrix adjust.
Identities = 278/459 (60%), Positives = 371/459 (80%), Gaps = 4/459 (0%)
Query: 94 YQPPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVF 153
YQP P + N GPI+KNEAPARIIPIAALNPYQGRW IKAR+TAKG++RR++NA+G+GKVF
Sbjct: 171 YQPAPVYGNRGPIVKNEAPARIIPIAALNPYQGRWTIKARITAKGEIRRFHNAKGEGKVF 230
Query: 154 SFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLE 213
SFD+LD+DGGEIR TCFN VVD+F+E IEVG+VYLISKGSLK AQKNFNHLKN+WEIFLE
Sbjct: 231 SFDMLDADGGEIRATCFNNVVDQFHERIEVGKVYLISKGSLKAAQKNFNHLKNDWEIFLE 290
Query: 214 ATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMET 273
+ +T++ C EED SIP+Q + F+ ISE+E+ ENN+++D++G+V+S+NP+ I+RKNG+ET
Sbjct: 291 SQTTIEPCYEEDSSIPQQHYDFKPISEVEALENNAMIDIVGVVMSINPTTTIMRKNGLET 350
Query: 274 QRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGT 333
Q+R L +KD S RSVELT+WG FC+KEGQ+LQ++ D G PVL+VK+G+V+DFSGKS+GT
Sbjct: 351 QKRSLQMKDMSNRSVELTMWGSFCSKEGQELQDLCDSGANPVLAVKAGRVSDFSGKSVGT 410
Query: 334 IPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLG 393
I STQL INPD EA +R+WF+ GKN ATVS+SRE GG + KTV+ IK+EGLG
Sbjct: 411 ISSTQLAINPDHPEARRVRDWFEREGKNTATVSLSREGGGGGRLEQ-RKTVAAIKDEGLG 469
Query: 394 RSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDEC 452
R +KPDW+TVRA + +IK ++FCY ACPL + +QC KKVT +G+ W+CDRC++ + EC
Sbjct: 470 RGDKPDWITVRATVFYIKPENFCYPACPLEVNGKQCMKKVTNNGDGTWRCDRCDRSVPEC 529
Query: 453 DYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFN 512
DYRYLL Q+QD TG TW+T FQE+GEE++ AKEL++ + + RF E I+ F
Sbjct: 530 DYRYLLSIQVQDHTGPTWITVFQETGEELMQHTAKELFL--WSQDEPQRFSEAIQKLTFT 587
Query: 513 QYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLL 551
+++F+LK+KEE Y DEQR K T+++ D++++ SE++ +L
Sbjct: 588 KHVFKLKVKEETYNDEQRTKSTLVKVDRMDWVSENKLML 626
>gi|186512039|ref|NP_567576.2| replication factor A1 [Arabidopsis thaliana]
gi|332658747|gb|AEE84147.1| replication factor A1 [Arabidopsis thaliana]
Length = 784
Score = 601 bits (1550), Expect = e-169, Method: Compositional matrix adjust.
Identities = 290/532 (54%), Positives = 390/532 (73%), Gaps = 20/532 (3%)
Query: 38 RVNNYSAPNSGTFNLQNSGTFNSQNPGSFSTPNSGTFRAPNAGSIVRSFQPTVQPPYQPP 97
+VNN S G S P S +TP++ + P++G+ V T Q + P
Sbjct: 145 QVNNIEPGRSNAAISPQVGGTGSSVPAS-TTPSTRAYSNPSSGNGV-----TRQDYARDP 198
Query: 98 PN------------FRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNN 145
P + N GP+ +NEAP +IIP+ AL+PY GRW IKARVT K L++Y+N
Sbjct: 199 PTSYPHQPQPPPPMYANRGPVARNEAPPKIIPVNALSPYSGRWTIKARVTNKAALKQYSN 258
Query: 146 ARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLK 205
RG+GKVF+FDLLD+DGGEIRVTCFNAV D+FY+ I VG +YLIS+GSL+PAQKNFNHL+
Sbjct: 259 PRGEGKVFNFDLLDADGGEIRVTCFNAVADQFYDQIVVGNLYLISRGSLRPAQKNFNHLR 318
Query: 206 NEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPI 265
N++EI L+ ST+ C EED +IP+ QF FR I +IES ENN IVDVIGIV S++P+V I
Sbjct: 319 NDYEIMLDNASTIKQCYEEDAAIPRHQFHFRTIGDIESMENNCIVDVIGIVSSISPTVTI 378
Query: 266 LRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVND 325
RKNG T +R L LKD SGRSVE+T+WGDFCN EGQ+LQ + D G FPVL+VK+G++++
Sbjct: 379 TRKNGTATPKRSLQLKDMSGRSVEVTMWGDFCNAEGQRLQSLCDSGVFPVLAVKAGRISE 438
Query: 326 FSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVS 385
F+GK++ TI S+QLFI+PDF EA +L+ WF+ GK+ +S+SRE +G K ++ KT+S
Sbjct: 439 FNGKTVSTIGSSQLFIDPDFVEAEKLKNWFEREGKSVPCISLSREF-SGSGKVDVRKTIS 497
Query: 386 QIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDR 444
QIK+E LG SEKPDW+TV A I ++K D+FCYTACP+M GDR C+KKVT +G+ W+C++
Sbjct: 498 QIKDEKLGTSEKPDWITVSATILYLKFDNFCYTACPIMNGDRPCSKKVTDNGDGTWRCEK 557
Query: 445 CNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGE 504
C++ +DECDYRY+LQ QIQD T LT VTAFQE+GEEI+G AK+LY +K E +D+ +F +
Sbjct: 558 CDKSVDECDYRYILQLQIQDHTDLTCVTAFQEAGEEIMGISAKDLYYVKNEHKDEEKFED 617
Query: 505 IIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
IIR F +Y F+LK+KEE + DEQRVK TV++ D++NYS+++R +L + K
Sbjct: 618 IIRKVAFTKYNFKLKVKEETFSDEQRVKATVVKVDKLNYSADTRTMLGAMDK 669
>gi|302774432|ref|XP_002970633.1| hypothetical protein SELMODRAFT_441216 [Selaginella moellendorffii]
gi|300162149|gb|EFJ28763.1| hypothetical protein SELMODRAFT_441216 [Selaginella moellendorffii]
Length = 815
Score = 595 bits (1534), Expect = e-167, Method: Compositional matrix adjust.
Identities = 274/459 (59%), Positives = 358/459 (77%), Gaps = 4/459 (0%)
Query: 102 NHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSD 161
N GPI +NE P ++PIAALNPY GRW IKAR+T+K DLRR+NNARGDG+VFSFDLLD++
Sbjct: 262 NRGPIARNEGPPGLVPIAALNPYHGRWTIKARITSKSDLRRFNNARGDGRVFSFDLLDAE 321
Query: 162 GGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLC 221
GGEIRVTCFN V D FYE +VGR+Y++SKGSL+ AQK FNHLKN+WEI E S +D C
Sbjct: 322 GGEIRVTCFNNVADEFYERAQVGRLYMVSKGSLRAAQKQFNHLKNDWEIMFEKDSVLDPC 381
Query: 222 TEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLK 281
E D S+P+Q F F+ +SEIE+ NN++VD IG+V+ VN + I+RKNG ETQRR L L+
Sbjct: 382 PE-DSSVPQQVFDFKQVSEIENLPNNAMVDAIGVVVGVNQTTTIMRKNGTETQRRTLQLR 440
Query: 282 DTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFI 341
D SG+SVE+T+WG+FC +EGQ LQE+ D G P+L++K+G+V+DFSGKS+GTI ST+ I
Sbjct: 441 DRSGKSVEITMWGNFCTQEGQHLQELCDSGQSPILAIKAGRVSDFSGKSLGTISSTRFQI 500
Query: 342 NPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWV 401
NPD EA L+ WF+ G++A SISRE A GG + E KTVSQIK+EGLGRSEKPD+V
Sbjct: 501 NPDHPEARSLQLWFEREGRHAQAQSISREGAGGGGRTENRKTVSQIKDEGLGRSEKPDFV 560
Query: 402 TVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQA 460
T+RA I FIK+DSFCYTACPL IGDRQC+KKVT +G+ W+C+RC++ + ECDYRY+L
Sbjct: 561 TIRATIHFIKTDSFCYTACPLQIGDRQCSKKVTNNGDGTWRCERCDRTVPECDYRYMLSI 620
Query: 461 QIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKI 520
Q+ D TG TW+T FQE+ EE+LG AK+L+M K E D+ RF + I S F Q+ F+++I
Sbjct: 621 QVMDHTGATWLTGFQEAAEELLGVKAKDLFMWKQE--DNGRFLDHIASIQFTQHHFKVRI 678
Query: 521 KEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKSFR 559
KEE + DEQRVK+ + RA+++++ +ES+Y++D I K R
Sbjct: 679 KEESFNDEQRVKVNIQRAEKLDFVAESKYMIDAIGKLRR 717
>gi|302770080|ref|XP_002968459.1| hypothetical protein SELMODRAFT_89304 [Selaginella moellendorffii]
gi|300164103|gb|EFJ30713.1| hypothetical protein SELMODRAFT_89304 [Selaginella moellendorffii]
Length = 636
Score = 592 bits (1525), Expect = e-166, Method: Compositional matrix adjust.
Identities = 272/454 (59%), Positives = 356/454 (78%), Gaps = 4/454 (0%)
Query: 102 NHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSD 161
N GPI +NE P ++PIAALNPY GRW IKAR+T+K DLRR+NNARGDG+VFSFDLLD++
Sbjct: 186 NRGPIARNEGPPGLVPIAALNPYHGRWTIKARITSKSDLRRFNNARGDGRVFSFDLLDAE 245
Query: 162 GGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLC 221
GGEIRVTCFN V D FYE +VGR+Y++SKGSL+ AQK FNHLKN+WEI E S +D C
Sbjct: 246 GGEIRVTCFNNVADEFYERAQVGRLYMVSKGSLRAAQKQFNHLKNDWEIMFEKDSVLDPC 305
Query: 222 TEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLK 281
E D S+P+Q F F+ +SEIE+ NN++VD IG+V+ VN + I+RKNG ETQRR L L+
Sbjct: 306 PE-DSSVPQQVFDFKQVSEIENLPNNAMVDAIGVVVGVNQTTTIMRKNGTETQRRTLQLR 364
Query: 282 DTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFI 341
D SG+SVE+T+WG+FC +EGQ LQE+ D G P+L++K+G+V+DFSGKS+GTI ST+ I
Sbjct: 365 DRSGKSVEITMWGNFCTQEGQHLQELCDSGQSPILAIKAGRVSDFSGKSLGTISSTRFQI 424
Query: 342 NPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWV 401
NPD EA L+ WF+ G++A SISRE A GG + E KTVSQIK+EGLGRSEKPD+V
Sbjct: 425 NPDHPEARSLQLWFEREGRHAQAQSISREGAGGGGRTENRKTVSQIKDEGLGRSEKPDFV 484
Query: 402 TVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQA 460
T+RA I FIK+DSFCYTACPL IGDRQC+KKVT +G+ W+C+RC++ + ECDYRY+L
Sbjct: 485 TIRATIHFIKTDSFCYTACPLQIGDRQCSKKVTNNGDGTWRCERCDRTVPECDYRYMLSI 544
Query: 461 QIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKI 520
Q+ D TG TW+T FQE+ EE+LG AK+L+M K E D+ RF + I S F Q+ F+++I
Sbjct: 545 QVMDHTGATWLTGFQEAAEELLGVKAKDLFMWKQE--DNGRFLDHIASIQFTQHHFKVRI 602
Query: 521 KEELYGDEQRVKITVIRADQVNYSSESRYLLDLI 554
KEE + DEQRVK+ + RA+++++ +ES+Y++D I
Sbjct: 603 KEESFNDEQRVKVNIQRAEKLDFVAESKYMIDAI 636
>gi|357484641|ref|XP_003612608.1| Replication protein A 70 kDa DNA-binding subunit [Medicago
truncatula]
gi|355513943|gb|AES95566.1| Replication protein A 70 kDa DNA-binding subunit [Medicago
truncatula]
Length = 1723
Score = 570 bits (1470), Expect = e-160, Method: Compositional matrix adjust.
Identities = 300/504 (59%), Positives = 382/504 (75%), Gaps = 11/504 (2%)
Query: 55 SGTFNSQNPGSFSTPNSGTFRAPNAGSIVRSFQPTVQPPYQPPPNFRNHGPILKNEAPAR 114
+G+ QN SF P T R P S VR QP Q QP P + N GP +N+AP R
Sbjct: 215 NGSSGEQNT-SFRNPLCETSR-PVQNSYVRPPQPVNQ---QPSPMY-NRGPTGRNDAPPR 268
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
IIPI+ALNPYQ W IKARVTAKG+LR Y N+RG GKVFSFDLLDSD GEIR TCFN V
Sbjct: 269 IIPISALNPYQNMWTIKARVTAKGELRTYTNSRGQGKVFSFDLLDSDRGEIRATCFNTVA 328
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
++FY +IEVG+VYL+S+GSLKPAQKNFNHL N+ EI L+ TS + C +D+SI +Q ++
Sbjct: 329 EQFYNVIEVGKVYLVSRGSLKPAQKNFNHLPNDQEITLDITSVIQPCV-DDNSILQQIYN 387
Query: 235 FRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWG 294
FR I +IE+ +NNSIVDVI +V S++P+ I+RKNG ETQ+R L LKD SGRSVELT+WG
Sbjct: 388 FRPIGDIENMQNNSIVDVIAVVTSISPTASIIRKNGTETQKRSLQLKDMSGRSVELTVWG 447
Query: 295 DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREW 354
FCN EGQKLQ + D G FP+L VKS +VNDF+GKSIGTI ++QL + PDF EA LR W
Sbjct: 448 SFCNTEGQKLQNICDSGEFPILVVKSARVNDFNGKSIGTIATSQLLVEPDFPEAFTLRGW 507
Query: 355 FDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDS 414
FD G+N + SISRE ++ G K+E+ KT+SQIK+E LG S+KPDW+++ A + F K D+
Sbjct: 508 FDQEGRNVPSQSISRESSSFG-KSEVQKTISQIKDENLGTSDKPDWISICANVVFFKYDN 566
Query: 415 FCYTACPLMIGDRQCNKKVTQSGNR-WQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTA 473
F YTACP MIGDR+CNKKVT +G++ W C+RC+ + CDYRYLLQ QIQD TG+TWVTA
Sbjct: 567 FYYTACPNMIGDRKCNKKVTDNGDKTWHCERCDTSL-SCDYRYLLQMQIQDHTGMTWVTA 625
Query: 474 FQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKI 533
FQE GE+I+G PAK+L+ +K+E +D+ +F EII VF +Y+F+LK+KEE + DE RVK
Sbjct: 626 FQEGGEDIMGMPAKDLFSVKFEEKDEEKFKEIISKVVFTKYMFKLKVKEETFNDEARVKS 685
Query: 534 TVIRADQ-VNYSSESRYLLDLISK 556
TV++A++ VN++SES+ LLDLI K
Sbjct: 686 TVVKAEKIVNFASESKSLLDLIDK 709
>gi|2828288|emb|CAA16702.1| replication A protein-like [Arabidopsis thaliana]
gi|7268708|emb|CAB78915.1| replication A protein-like [Arabidopsis thaliana]
Length = 717
Score = 563 bits (1450), Expect = e-157, Method: Compositional matrix adjust.
Identities = 262/447 (58%), Positives = 349/447 (78%), Gaps = 10/447 (2%)
Query: 111 APARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCF 170
AP +IIP+ AL+PY GRW IKARVT K L++Y+N RG+GKVF+FDLLD+DGGEIRVTCF
Sbjct: 165 APPKIIPVNALSPYSGRWTIKARVTNKAALKQYSNPRGEGKVFNFDLLDADGGEIRVTCF 224
Query: 171 NAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPK 230
NAV D+FY+ I VG +YLIS+GSL+PAQKNFNHL+N++EI L+ ST+ C EED +IP+
Sbjct: 225 NAVADQFYDQIVVGNLYLISRGSLRPAQKNFNHLRNDYEIMLDNASTIKQCYEEDAAIPR 284
Query: 231 QQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVEL 290
QF FR I +IES ENN IVDVIGIV S++P+V I RKNG T +R L LKD SGRSVE+
Sbjct: 285 HQFHFRTIGDIESMENNCIVDVIGIVSSISPTVTITRKNGTATPKRSLQLKDMSGRSVEV 344
Query: 291 TLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHE 350
T+WGDF Q + D G FPVL+VK+G++++F+GK++ TI S+QLFI+PDF EA +
Sbjct: 345 TMWGDF--------QSLCDSGVFPVLAVKAGRISEFNGKTVSTIGSSQLFIDPDFVEAEK 396
Query: 351 LREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFI 410
L+ WF+ GK+ +S+SRE +G K ++ KT+SQIK+E LG SEKPDW+TV A I ++
Sbjct: 397 LKNWFEREGKSVPCISLSREF-SGSGKVDVRKTISQIKDEKLGTSEKPDWITVSATILYL 455
Query: 411 KSDSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQTGLT 469
K D+FCYTACP+M GDR C+KKVT +G+ W+C++C++ +DECDYRY+LQ QIQD T LT
Sbjct: 456 KFDNFCYTACPIMNGDRPCSKKVTDNGDGTWRCEKCDKSVDECDYRYILQLQIQDHTDLT 515
Query: 470 WVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQ 529
VTAFQE+GEEI+G AK+LY +K E +D+ +F +IIR F +Y F+LK+KEE + DEQ
Sbjct: 516 CVTAFQEAGEEIMGISAKDLYYVKNEHKDEEKFEDIIRKVAFTKYNFKLKVKEETFSDEQ 575
Query: 530 RVKITVIRADQVNYSSESRYLLDLISK 556
RVK TV++ D++NYS+++R +L + K
Sbjct: 576 RVKATVVKVDKLNYSADTRTMLGAMDK 602
>gi|296088465|emb|CBI37456.3| unnamed protein product [Vitis vinifera]
Length = 754
Score = 543 bits (1399), Expect = e-152, Method: Compositional matrix adjust.
Identities = 261/425 (61%), Positives = 328/425 (77%), Gaps = 43/425 (10%)
Query: 133 RVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKG 192
+ TAKG+LR YNN RGDGKVFSFDLLDSDGGEIRVTCFNAV D+FY IE G+VYLISKG
Sbjct: 150 QFTAKGELRHYNNPRGDGKVFSFDLLDSDGGEIRVTCFNAVADQFYNQIETGKVYLISKG 209
Query: 193 SLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDV 252
SLKPAQK FNHL+N+ EIFLE+TST+ C ++D+SIP+QQF FR IS++ES ENNS+VDV
Sbjct: 210 SLKPAQKTFNHLRNDHEIFLESTSTIQPCFDDDNSIPRQQFHFRSISDVESMENNSVVDV 269
Query: 253 IGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGF 312
IG+V ++PS I+RKNG ETQ+R L+LKD SGRSVELTLWG+FCN EGQ+LQ M
Sbjct: 270 IGVVSFISPSASIMRKNGTETQKRALHLKDMSGRSVELTLWGNFCNAEGQRLQNM----- 324
Query: 313 FPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIA 372
+GTI ++QLFI PDF EA +L+EWFD G+N +VSISRE+
Sbjct: 325 ------------------LGTISTSQLFIEPDFPEARKLKEWFDKEGRNTPSVSISREVT 366
Query: 373 AGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKK 432
+ G + ++ KT+SQIK+E LG SEKPDW+TV A ++FIK D+FCYTACP+MIGDRQCNKK
Sbjct: 367 SMG-RTDVRKTISQIKDERLGTSEKPDWITVCATVSFIKVDNFCYTACPIMIGDRQCNKK 425
Query: 433 VTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYM 491
VT +G+ +W+C+RC+Q +D+CDYRY+LQ QIQD TGLTWVTAFQE C
Sbjct: 426 VTNNGDGKWRCERCDQSVDDCDYRYILQFQIQDHTGLTWVTAFQE-------CE------ 472
Query: 492 LKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLL 551
QDD +FGEI+R +F +Y F+LK+KEE++ DEQRVK TV++A++VN+SSESR+LL
Sbjct: 473 -----QDDEKFGEILRGVLFTKYSFKLKVKEEIFSDEQRVKSTVVKAEKVNFSSESRFLL 527
Query: 552 DLISK 556
D++ K
Sbjct: 528 DMVEK 532
>gi|326533496|dbj|BAK05279.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1027
Score = 543 bits (1398), Expect = e-151, Method: Compositional matrix adjust.
Identities = 253/500 (50%), Positives = 358/500 (71%), Gaps = 6/500 (1%)
Query: 57 TFNSQNPGSFSTPNSGTFRAPNAGSIVRSFQPTVQPPYQPPPNFRNHGPILKNEAPARII 116
+ NS F+ P +G +P R QP+ Q QPP + N+GP+ KN A R +
Sbjct: 273 SLNSHQNQRFAAPGTGGGISPPGNVYGRPAQPSYQ---QPPQAYANNGPVAKNGAALRTV 329
Query: 117 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDR 176
PI+ALNPYQ W IKARVTAK ++ Y NA+G GK+F+FDL D+ GGEIR CFN +D+
Sbjct: 330 PISALNPYQRTWTIKARVTAKSQVKHYKNAKGPGKLFNFDLRDAHGGEIRAVCFNTQLDQ 389
Query: 177 FYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFR 236
FY++IEV +VYLIS+GSLKPA K +NHL N++E+ L++++T+++C+++D SIP+QQF FR
Sbjct: 390 FYDLIEVDKVYLISRGSLKPANKQYNHLNNDYEVSLDSSTTIEVCSDDDSSIPRQQFDFR 449
Query: 237 HISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDF 296
ISEI + + +++VD++G+V SV+PS P RK+G ETQ+R+L LKD SG SVE+T WG F
Sbjct: 450 QISEIANMDKDTMVDLLGVVTSVSPSSPFTRKDGAETQKRVLQLKDMSGFSVEITFWGGF 509
Query: 297 CNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFD 356
CN EGQ+LQ + D G PVL+++S +V DF GK++ TI S+ L INPDF +A LR+W+
Sbjct: 510 CNAEGQQLQSLCDSGLNPVLALRSVRVGDFKGKNVSTIGSSFLKINPDFPDAESLRQWYI 569
Query: 357 SGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFC 416
+ GKNAA +S+S E +G + + KT+ QIK E LGRSEKPDW+TV+ I+ I +D+FC
Sbjct: 570 TEGKNAAFISLSME-GSGMGRTDDRKTIEQIKAENLGRSEKPDWITVKGTISHISTDNFC 628
Query: 417 YTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQ 475
Y AC + +CNKKVT +G+ WQCD+C Q C+YRY+LQ QIQD TG ++ TAF
Sbjct: 629 YPACTTEVNGTRCNKKVTNNGDGMWQCDKCEQSTPNCEYRYMLQCQIQDYTGTSYATAFH 688
Query: 476 ESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITV 535
++G++I+G PA++LY +K+E QDD +F +II+ F +LF+LK+KEE++ DE RVK +
Sbjct: 689 DAGKDIIGLPAQDLYRIKHEEQDDEKFADIIQKVRFELFLFKLKVKEEVFNDEPRVKCYI 748
Query: 536 IRADQV-NYSSESRYLLDLI 554
A ++ + S ESR+LL I
Sbjct: 749 ANAQKLEDTSKESRFLLGPI 768
>gi|357134970|ref|XP_003569087.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Brachypodium distachyon]
Length = 945
Score = 536 bits (1380), Expect = e-149, Method: Compositional matrix adjust.
Identities = 249/492 (50%), Positives = 356/492 (72%), Gaps = 10/492 (2%)
Query: 66 FSTPNSGTFRAPNAGSIVRSFQPTVQPPYQPPPNFRNHGPILKNEAPARIIPIAALNPYQ 125
F+ P +G P R QP+ Q QPPP +RN GP+ KNEAP R+ PI+ALNPYQ
Sbjct: 232 FAIPGAGRGFGPPGNIYGRPAQPSYQ---QPPPAYRNSGPVAKNEAPPRVTPISALNPYQ 288
Query: 126 GRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGR 185
W IKARVTAK + + NA G G VF+FDLLD+ GGEIR CF A VD+FY +IEV +
Sbjct: 289 TTWTIKARVTAKSRVTHFINASGPGTVFNFDLLDAHGGEIRAKCFKAAVDQFYNLIEVDK 348
Query: 186 VYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAE 245
VYLIS+G+++PAQK FN L N++++ L+ ++++++C+ +D SIP+QQF+FR ISEI + +
Sbjct: 349 VYLISRGAIRPAQKKFNPLNNDYDLTLDVSTSIEICSGDDSSIPRQQFNFRQISEIANMD 408
Query: 246 NNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQ 305
S+VD++G+V SV+P+VP+++K+G ET++R L LKD SG SVE+T WGDFC+ EGQ+LQ
Sbjct: 409 GGSMVDLLGVVTSVSPTVPLMKKDGNETKKRNLQLKDMSGCSVEITFWGDFCDAEGQQLQ 468
Query: 306 EMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATV 365
+ D G P+L +KSG+VNDF+GKS+GTI S+ + INPDF +A LR+W+ + GKNAA
Sbjct: 469 SLCDSGSSPMLVLKSGRVNDFNGKSVGTISSSLIKINPDFPDAERLRQWYITEGKNAACS 528
Query: 366 SISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIG 425
S+S +A G + ++ KT+++IK E LG+S+KP W+TV I I +D FCY AC + +
Sbjct: 529 SLS--VATMG-RTDVRKTIAEIKGENLGQSDKPAWITVIGSIFHIANDPFCYPACTMQVN 585
Query: 426 DRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGC 484
RQCNKKVT +G+ W CD+C Q C+YRYLL Q+QD TG T+ AFQE+G++I+G
Sbjct: 586 GRQCNKKVTNNGDGMWYCDKCEQSSPNCEYRYLLNCQMQDHTGSTYCNAFQEAGKDIIGV 645
Query: 485 PAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYS 544
A+EL+ +K+E QDDV+F EI++ +L +LK+KEE+Y DE RVK T+ +A++++
Sbjct: 646 TAQELFRIKHEEQDDVQFAEIMQRARHQLFLLKLKVKEEIYNDEARVKYTIFKAEKLD-- 703
Query: 545 SESRYLLDLISK 556
+ R+LL +I +
Sbjct: 704 -DPRFLLGIIDR 714
>gi|326511146|dbj|BAJ87587.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 940
Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust.
Identities = 246/455 (54%), Positives = 343/455 (75%), Gaps = 2/455 (0%)
Query: 101 RNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDS 160
RN GP KNEA +R+IPI+ALNPYQ W IKARVTAK +R +N A+G GKVFSFDLLD+
Sbjct: 261 RNSGPAAKNEAASRVIPISALNPYQRTWTIKARVTAKAHVRHFNKAKGSGKVFSFDLLDA 320
Query: 161 DGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDL 220
G EIR TCF+A VD+FY++IEV +VYL+S+GSLKPA K FN L N++E+ LE +S++++
Sbjct: 321 QGVEIRATCFDAAVDQFYDVIEVDKVYLVSRGSLKPANKRFNPLNNDYEMNLEPSSSIEV 380
Query: 221 CTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNL 280
C+ +D SIPK QF+FR ISEI + + ++ +D++G+V SV PS ++ KNG ETQ+R+L L
Sbjct: 381 CSGDDSSIPKLQFNFRQISEIANMDKDTTIDLLGVVTSVRPSFTVMLKNGGETQKRVLQL 440
Query: 281 KDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLF 340
KD SG SV++T WG+FC+ EGQ+LQ + D G P+L++KSG+V +F+GK++ T S+ L
Sbjct: 441 KDMSGCSVDITFWGNFCDAEGQQLQSLCDSGLNPILALKSGRVGEFNGKTVSTTNSSLLK 500
Query: 341 INPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDW 400
INPDFAEA L +W+ + GK AA S+S E+++ G + ++ K +QIK+E LG+SEKPDW
Sbjct: 501 INPDFAEAKRLGQWYITEGKIAACTSLSGEMSSMG-RTDVRKKTAQIKDERLGQSEKPDW 559
Query: 401 VTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQ 459
+TV+ I+ I +D+FCY AC + ++CNKKV +G+ W C++C Q + C+YRYLL
Sbjct: 560 ITVQGAISQIYTDNFCYPACTTEVNGKRCNKKVINNGDGMWLCEKCEQSSETCEYRYLLS 619
Query: 460 AQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLK 519
IQD TG T+ TAFQESG+EI+G PA++L+ +K+E QDDVRF EII+ F QYLF+LK
Sbjct: 620 CHIQDHTGFTYATAFQESGQEIVGLPAQDLFRIKHEEQDDVRFAEIIQQVRFQQYLFKLK 679
Query: 520 IKEELYGDEQRVKITVIRADQVNYSSESRYLLDLI 554
+KEE+Y DE RVK V++A+ + + ESR+LL I
Sbjct: 680 VKEEVYNDEPRVKCNVVKAEIYDPAKESRFLLGAI 714
>gi|115461691|ref|NP_001054445.1| Os05g0111000 [Oryza sativa Japonica Group]
gi|52353639|gb|AAU44205.1| unknown protein [Oryza sativa Japonica Group]
gi|113577996|dbj|BAF16359.1| Os05g0111000 [Oryza sativa Japonica Group]
gi|222629944|gb|EEE62076.1| hypothetical protein OsJ_16860 [Oryza sativa Japonica Group]
Length = 951
Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust.
Identities = 262/538 (48%), Positives = 366/538 (68%), Gaps = 14/538 (2%)
Query: 23 TAQKTIPSNNLPQPVRVNNYSAPNSGTFNLQNSGTFNSQNPGS---FSTPNSGTFRAPNA 79
T+Q I + N QP N N+ +Q + +S NP F+ P SG P
Sbjct: 219 TSQLNIMNANTMQPTSQLNTMNANT----MQPTSQLSSLNPNQNQRFAAPASGGVFGPPG 274
Query: 80 GSIVRSFQPTVQPPYQPPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGD 139
+ + +P+ Q QPPP + N GP +N++ RIIPI ALNPYQ +W IKARVTAK D
Sbjct: 275 NAYGQPSRPSYQ---QPPPVYMNRGPASRNDSATRIIPITALNPYQPKWTIKARVTAKSD 331
Query: 140 LRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQK 199
+R ++NAR G VFSFDLLD+ GGEIR C+ D+F+ IEVGRVYLIS+GSLKPAQK
Sbjct: 332 IRHWSNARSSGTVFSFDLLDAQGGEIRAQCWKESADKFFGQIEVGRVYLISRGSLKPAQK 391
Query: 200 NFNHLKNEWEIFLE-ATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVIS 258
+N L +++EI L+ STV++C+++D+SIP+ Q++FR ISE+E+ N +IVD++G+V S
Sbjct: 392 KYNTLNHDYEITLDIGLSTVEVCSDDDNSIPRLQYNFRQISELENMANETIVDLLGVVTS 451
Query: 259 VNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSV 318
V+PS I+RK G ET++R + LKD SGRS+E+TLWG+FC+ EGQ+LQ D G P+++
Sbjct: 452 VSPSATIMRKIGTETRKRSIQLKDLSGRSIEVTLWGNFCDAEGQQLQLQCDSGSNPIIAF 511
Query: 319 KSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKN 378
K +V DF+GKS+ TI STQL INPDF E LR+W+ + GK A +S+SRE+ G +
Sbjct: 512 KGARVGDFNGKSVSTIGSTQLIINPDFPEVERLRQWYMTEGKTAPCISLSREMLNMG-RT 570
Query: 379 EIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACP-LMIGDRQCNKKVTQSG 437
+ KT++QIK+E LGR EKPDW+TV+A I+ + ++SFCY ACP L+ RQCNKK +G
Sbjct: 571 DARKTIAQIKDENLGRLEKPDWITVKAAISHVTTESFCYPACPKLLPVGRQCNKKAINNG 630
Query: 438 N-RWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYEL 496
+ W CDRC++ +YRY+L+ QIQD TG T+ +AF E+GE+I G A EL+ ++
Sbjct: 631 DGMWHCDRCDESFQNPEYRYMLRFQIQDHTGSTYASAFDEAGEQIFGRKAGELFSIRNVD 690
Query: 497 QDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLI 554
QDD +F EII ++ YLF+LK+KEE Y DEQ +K T ++ ++++ S ES LL I
Sbjct: 691 QDDAQFAEIIEGVRWHLYLFKLKVKEETYNDEQSLKCTAVKVEKLDPSKESNVLLGAI 748
>gi|356507210|ref|XP_003522362.1| PREDICTED: LOW QUALITY PROTEIN: replication protein A 70 kDa
DNA-binding subunit-like [Glycine max]
Length = 586
Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust.
Identities = 269/484 (55%), Positives = 333/484 (68%), Gaps = 19/484 (3%)
Query: 24 AQKTIPSNNLPQPVRVNN---YSAPNSGTFNLQNSGTFNSQNPGSFSTPNSGTFRAPNAG 80
A SN LP +V + SAP SG+ QN+G N Q S S NS
Sbjct: 110 ASSVYSSNALPTYPKVEHEISRSAPFSGSSGGQNTGFHNPQFEASRSLQNSYA------- 162
Query: 81 SIVRSFQPTVQPPY-QPPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGD 139
+P QP Y P P + N P+ +NEA RIIPIA LNPYQ W IKARVT K +
Sbjct: 163 ------RPPQQPMYRHPSPMYTNKAPMGRNEAAPRIIPIATLNPYQSMWTIKARVTFKAE 216
Query: 140 LRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQK 199
LR Y NARGD KVFSFDLLDSDGGEIR TCFN V D+FY +IE G+VYLI +GS+KP QK
Sbjct: 217 LRHYTNARGDRKVFSFDLLDSDGGEIRATCFNVVADQFYNVIEAGKVYLIFRGSIKPTQK 276
Query: 200 NFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISV 259
NFNHL N+ E+ L+ S + C +++DSI Q F++R ISEIES ENN+IVDVIG+V S+
Sbjct: 277 NFNHLPNDQELTLDVASIIQPCLDDNDSITSQTFNYRPISEIESLENNNIVDVIGVVTSI 336
Query: 260 NPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVK 319
+P I+RKNG E Q+R L LKD SGRSVELTL G+FC EGQ LQ + DVG FPVL+ K
Sbjct: 337 SPKTSIMRKNGTEVQKRTLQLKDMSGRSVELTLRGNFCIVEGQMLQSICDVGEFPVLATK 396
Query: 320 SGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNE 379
+ +VNDF+GKS+GTI ++QL++ DF EA L+ WF++ GK+ T+SISRE++ G K +
Sbjct: 397 AIRVNDFNGKSVGTIATSQLYVEADFPEACILKIWFENEGKSVPTLSISREMSNLG-KTD 455
Query: 380 IHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGN- 438
+ KT+SQIK+E LG SEKP+W++V A IK D+F Y CPL I DRQCNK VT + +
Sbjct: 456 VRKTISQIKDEKLGTSEKPNWISVFAAFXHIKVDNFYYPGCPLKIRDRQCNKNVTNNADG 515
Query: 439 RWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQD 498
W C+ C Q ID CD+RYLL QIQD T +TWVT FQ+SGEEI+G PAK LY +KYE QD
Sbjct: 516 TWHCEICIQSIDACDFRYLLSMQIQDHTSITWVTVFQKSGEEIMGIPAKYLYYMKYEEQD 575
Query: 499 DVRF 502
D +F
Sbjct: 576 DDKF 579
>gi|242086615|ref|XP_002439140.1| hypothetical protein SORBIDRAFT_09g001260 [Sorghum bicolor]
gi|190688743|gb|ACE86406.1| replication protein A1-like protein [Sorghum bicolor]
gi|241944425|gb|EES17570.1| hypothetical protein SORBIDRAFT_09g001260 [Sorghum bicolor]
Length = 933
Score = 516 bits (1328), Expect = e-143, Method: Compositional matrix adjust.
Identities = 246/462 (53%), Positives = 334/462 (72%), Gaps = 8/462 (1%)
Query: 95 QPPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFS 154
QPPP N P+ KN+A +R++P+A LNPYQ W IKARVTAK DLR YNN G GKVFS
Sbjct: 292 QPPPGHMNRNPVSKNDA-SRLVPVAHLNPYQNTWTIKARVTAKTDLRHYNNKNGAGKVFS 350
Query: 155 FDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEA 214
FD+LD GGEIRVTCFNA D+F+++IEV +VYLISKGS+K AQK FN L +E+EI L+
Sbjct: 351 FDILDGQGGEIRVTCFNAQADQFFDLIEVDKVYLISKGSVKAAQKKFNSLNHEYEIALDF 410
Query: 215 TSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRK-NGMET 273
S++++C ++D +IP+ ++FR ISEIE+ E +IVD+IGIV SV PS I+RK + E
Sbjct: 411 RSSIEVCVDDDSNIPRPHYNFRQISEIENLEAGTIVDLIGIVTSVGPSGTIIRKLDNSEV 470
Query: 274 QRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGT 333
Q+R L LKD SGRS+ELTLWG FC+ EGQ+LQ D G PVL++K +V +FSGKS+ T
Sbjct: 471 QKRNLQLKDMSGRSIELTLWGKFCDAEGQQLQLQCDSGLNPVLALKGARVTEFSGKSVNT 530
Query: 334 IPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLG 393
ST + ++PDF EA LR W+ + GK AA VS+S + ++ K V+QIK+E LG
Sbjct: 531 TGSTHVKVDPDFPEAESLRRWYATEGKTAACVSLS---VVSMGRTDVRKAVAQIKDEDLG 587
Query: 394 RSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDEC 452
RSEKPD++TV+ I+ + +D+FCY AC L + + CNKKV +G+ WQCD+C++ + C
Sbjct: 588 RSEKPDFITVKGAISHLTTDNFCYPACTLEVNGKVCNKKVINNGDGTWQCDKCDKSLPNC 647
Query: 453 DYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFN 512
+YRYLLQ Q+QD TG+T+ TAFQE+G EI+G A ELY ++ E D RF EI++ +
Sbjct: 648 EYRYLLQCQVQDHTGVTYATAFQEAGIEIVGHSAYELYNIREE--DPERFAEILQGVRWQ 705
Query: 513 QYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLI 554
Q+LF+LK+ EE Y DE RVK ++RA++++ + ES YLL +I
Sbjct: 706 QFLFKLKVYEETYNDEHRVKCNILRAEKLDPAKESSYLLGVI 747
>gi|226502879|ref|NP_001151792.1| DNA binding protein [Zea mays]
gi|195649707|gb|ACG44321.1| DNA binding protein [Zea mays]
gi|223945267|gb|ACN26717.1| unknown [Zea mays]
gi|413942327|gb|AFW74976.1| DNA binding protein [Zea mays]
Length = 876
Score = 499 bits (1286), Expect = e-138, Method: Compositional matrix adjust.
Identities = 237/461 (51%), Positives = 335/461 (72%), Gaps = 7/461 (1%)
Query: 95 QPPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFS 154
QPPP N P+ KN+A R++P+A LNPY +W IK RVTAK DLR YNNARG GKVFS
Sbjct: 254 QPPPGHMNRTPVSKNDA-YRLVPLAQLNPYLDKWTIKVRVTAKTDLRFYNNARGAGKVFS 312
Query: 155 FDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEA 214
FDLLD GEIR TCFN D+F+ +IEV +VYLISKGSLKPAQK FN L +E+EI L++
Sbjct: 313 FDLLDEQRGEIRATCFNTQADQFFNLIEVDKVYLISKGSLKPAQKKFNSLNHEYEISLDS 372
Query: 215 TSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQ 274
+++++C ++D +IP+QQ++FR ISEIE+ E ++I+D+IGIV SV PSV +RK+G+ETQ
Sbjct: 373 RTSIEVCADDDSNIPRQQYNFRKISEIENIEKDAILDLIGIVTSVGPSVTFIRKDGVETQ 432
Query: 275 RRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTI 334
RR L LKD SGRSV+LTLWG C EG +LQ + D G PVL++K +V D+SG+S+ +
Sbjct: 433 RRTLELKDMSGRSVQLTLWGKLCVAEGNQLQSLCDSGLNPVLALKGARVTDYSGRSVSSA 492
Query: 335 PSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGR 394
STQL I+P+ EA LR W+ +GGK AA VS+S ++ GG + K+++QIK+E LG+
Sbjct: 493 GSTQLKIDPEIPEAESLRRWYATGGKTAACVSLS-VVSMGGTC--VRKSIAQIKDENLGQ 549
Query: 395 SEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECD 453
EKPD++TV+A I+ + +D+FCY AC + + R CNKKVT +G+ W+CD+C+Q + C+
Sbjct: 550 LEKPDFITVKAAISHLIADNFCYPACTIDVNGRMCNKKVTDNGDGTWRCDKCDQSLPNCE 609
Query: 454 YRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQ 513
YRY+L QIQD +G+T TAF+++ + ++G EL + E D RF EI+++ + Q
Sbjct: 610 YRYVLNGQIQDHSGVTNFTAFEDAAKVMIGHSGHELNNISVE--DSERFAEILQAARWQQ 667
Query: 514 YLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLI 554
+LF LK+KEE+Y D +VK + +A++++ + ES YLL +I
Sbjct: 668 FLFTLKVKEEIYNDAPQVKCNITKAEKLDPAIESSYLLGVI 708
>gi|190688746|gb|ACE86409.1| replication protein A1-like protein [Sorghum bicolor]
Length = 993
Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust.
Identities = 239/467 (51%), Positives = 337/467 (72%), Gaps = 6/467 (1%)
Query: 95 QPPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFS 154
Q PP P+ KN+A ++P+A LNPYQ RW I ARVTAK DLR Y+N+RG GKVFS
Sbjct: 463 QSPPGHMKRTPVSKNDA-NHLVPVAQLNPYQTRWKIMARVTAKTDLRHYSNSRGPGKVFS 521
Query: 155 FDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEA 214
FDLLD GGEIR TCFN D+F+++IEV +VYLISKG LKPA K FN L +E+E+ L+
Sbjct: 522 FDLLDGQGGEIRATCFNVQADQFFDLIEVDKVYLISKGLLKPAMKKFNSLNHEYEVTLDH 581
Query: 215 TSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQ 274
+++++C ++D +IP+QQ++FR ISEIE+ E +IVD+IGIV SV PS ++RK+G +TQ
Sbjct: 582 RTSIEVCVDDDSNIPRQQYNFRQISEIENIEAGAIVDLIGIVTSVGPSSIVMRKDGTQTQ 641
Query: 275 RRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTI 334
+R L LKD S RS+E+ LWG FC+ EG++LQ + D G P+LS+K G+V DFSG+S+ TI
Sbjct: 642 KRTLQLKDMSFRSLEIILWGKFCDAEGRQLQLLCDSGSNPILSLKGGRVCDFSGRSVVTI 701
Query: 335 PSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGR 394
STQL +NPDF A L++W+ GKN A +S+S I + +++ + KT++QIK+E LGR
Sbjct: 702 SSTQLKVNPDFQVAERLKQWYIIEGKNTAFISLSWGI-SNMSRSHVLKTIAQIKDENLGR 760
Query: 395 SEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECD 453
S+KPD++TV+ I+ +K+D+FCY AC + + R CNKKV +G+ WQCD+CN+ + +
Sbjct: 761 SDKPDFITVKGAISHLKTDNFCYPACTMEVNGRLCNKKVMNNGDGTWQCDKCNKSLPNFE 820
Query: 454 YRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQ 513
YRYLL QIQD TG+T+ TAFQ +GE I G A+EL+M++ QDD+RF EI+++ + +
Sbjct: 821 YRYLLLCQIQDHTGVTYATAFQAAGEAIFGHTAQELFMIQNVEQDDMRFTEIMQAVLRRE 880
Query: 514 YLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKSFRK 560
YLF+LKI EE Y EQRV ++I +++ E+ LL +S+ K
Sbjct: 881 YLFKLKIYEETYNGEQRVICSIIGVEKL---EETNNLLKDVSRPILK 924
>gi|242086613|ref|XP_002439139.1| hypothetical protein SORBIDRAFT_09g001250 [Sorghum bicolor]
gi|241944424|gb|EES17569.1| hypothetical protein SORBIDRAFT_09g001250 [Sorghum bicolor]
Length = 663
Score = 496 bits (1278), Expect = e-137, Method: Compositional matrix adjust.
Identities = 239/467 (51%), Positives = 337/467 (72%), Gaps = 6/467 (1%)
Query: 95 QPPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFS 154
Q PP P+ KN+A ++P+A LNPYQ RW I ARVTAK DLR Y+N+RG GKVFS
Sbjct: 133 QSPPGHMKRTPVSKNDA-NHLVPVAQLNPYQTRWKIMARVTAKTDLRHYSNSRGPGKVFS 191
Query: 155 FDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEA 214
FDLLD GGEIR TCFN D+F+++IEV +VYLISKG LKPA K FN L +E+E+ L+
Sbjct: 192 FDLLDGQGGEIRATCFNVQADQFFDLIEVDKVYLISKGLLKPAMKKFNSLNHEYEVTLDH 251
Query: 215 TSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQ 274
+++++C ++D +IP+QQ++FR ISEIE+ E +IVD+IGIV SV PS ++RK+G +TQ
Sbjct: 252 RTSIEVCVDDDSNIPRQQYNFRQISEIENIEAGAIVDLIGIVTSVGPSSIVMRKDGTQTQ 311
Query: 275 RRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTI 334
+R L LKD S RS+E+ LWG FC+ EG++LQ + D G P+LS+K G+V DFSG+S+ TI
Sbjct: 312 KRTLQLKDMSFRSLEIILWGKFCDAEGRQLQLLCDSGSNPILSLKGGRVCDFSGRSVVTI 371
Query: 335 PSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGR 394
STQL +NPDF A L++W+ GKN A +S+S I + +++ + KT++QIK+E LGR
Sbjct: 372 SSTQLKVNPDFQVAERLKQWYIIEGKNTAFISLSWGI-SNMSRSHVLKTIAQIKDENLGR 430
Query: 395 SEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECD 453
S+KPD++TV+ I+ +K+D+FCY AC + + R CNKKV +G+ WQCD+CN+ + +
Sbjct: 431 SDKPDFITVKGAISHLKTDNFCYPACTMEVNGRLCNKKVMNNGDGTWQCDKCNKSLPNFE 490
Query: 454 YRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQ 513
YRYLL QIQD TG+T+ TAFQ +GE I G A+EL+M++ QDD+RF EI+++ + +
Sbjct: 491 YRYLLLCQIQDHTGVTYATAFQAAGEAIFGHTAQELFMIQNVEQDDMRFTEIMQAVLRRE 550
Query: 514 YLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKSFRK 560
YLF+LKI EE Y EQRV ++I +++ E+ LL +S+ K
Sbjct: 551 YLFKLKIYEETYNGEQRVICSIIGVEKL---EETNNLLKDVSRPILK 594
>gi|242061678|ref|XP_002452128.1| hypothetical protein SORBIDRAFT_04g020190 [Sorghum bicolor]
gi|241931959|gb|EES05104.1| hypothetical protein SORBIDRAFT_04g020190 [Sorghum bicolor]
Length = 831
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 234/530 (44%), Positives = 348/530 (65%), Gaps = 19/530 (3%)
Query: 40 NNYSAPNSGTFNLQNSGTFNSQNPGSFSTPNSGTFRAPNAGSIVRSFQPTVQPP------ 93
N ++ + GT + QN+ N P F P+ N G V + PP
Sbjct: 199 NVFTGGSYGTLSAQNTVNANMVEP-RFQQPS--LISHQNQGFAVTGTGEALTPPGNAHRR 255
Query: 94 -----YQPPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARG 148
Q P + N P+ +E + ++ I++L YQ RW IKARVTAK ++ +NNA+G
Sbjct: 256 HEHSYQQLPSGYINRAPV-ASEPASHVVAISSLKVYQTRWTIKARVTAKTGVKHWNNAKG 314
Query: 149 DGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEW 208
GK+FSFDL+D +GG+IR CF VD+FY++IEV +VYLIS G++KP+QK FN L N+
Sbjct: 315 TGKLFSFDLIDGEGGQIRAVCFKEAVDKFYDLIEVDKVYLISSGAVKPSQKRFNPLNNDL 374
Query: 209 EIFLEA-TSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILR 267
EI L+ TS+V++C+ +D +IPK Q+SF+ ISEIE+ +N+S VD++G+V SV PSV + R
Sbjct: 375 EITLDTLTSSVEICSSDDFNIPKVQYSFQQISEIENMDNHSAVDLLGVVTSVGPSVMMTR 434
Query: 268 KNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFS 327
K+G +TQ+R L L+D SGRSV +T WGDFC+ EGQ+LQ F P+L++ +++DFS
Sbjct: 435 KDGTQTQKRTLQLRDMSGRSVGVTFWGDFCDVEGQQLQLQCHSSFNPILALIGARISDFS 494
Query: 328 GKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQI 387
G+S+ TI STQL INPDF +A LR+W+ + G A +S+SRE + ++ KT++QI
Sbjct: 495 GRSVSTIGSTQLKINPDFPDAERLRQWYVTEGMTTACLSLSRE-QFNSVQADVRKTIAQI 553
Query: 388 KNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNR-WQCDRCN 446
K+E LGR+ K DW+TV+A I+ ++++SFCY ACPL+ ++ CNKKV SG+ W C+RC+
Sbjct: 554 KDETLGRN-KTDWITVKAAISHVQTESFCYPACPLIFNEKPCNKKVIDSGDGIWFCERCD 612
Query: 447 QEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEII 506
+ C+YRY+++ +IQD T TAFQE+G++I G A+EL ++ D+ F EII
Sbjct: 613 KSSGSCEYRYMVKFRIQDHTSTIIATAFQEAGKQIFGRTAQELRTIRNVNHDEALFTEII 672
Query: 507 RSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
++ LF+LK++EE Y DEQR+ T+I A++++ S ES L + I +
Sbjct: 673 EGARWHLNLFKLKVREESYNDEQRIGCTIINAEKLDPSKESNVLFEAIDR 722
>gi|218195961|gb|EEC78388.1| hypothetical protein OsI_18166 [Oryza sativa Indica Group]
Length = 988
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 236/522 (45%), Positives = 330/522 (63%), Gaps = 60/522 (11%)
Query: 41 NYSAPNS-GTFNLQNSGTFNSQNPGS-FSTPNSGTFRAPNAGSIVRSFQPTVQPPYQPP- 97
N SA S G + QN+ N P S + N+ T + + + + + T+QP Q
Sbjct: 316 NVSAVGSYGAISAQNTTNANMMQPTSQLNIMNANTMQPTSQLNTMNAN--TMQPTSQLSS 373
Query: 98 --PNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSF 155
PN GP +N++ RIIPI ALNPYQ +W IKARVTAK D+R ++NAR G VFSF
Sbjct: 374 LNPNQNQRGPASRNDSATRIIPITALNPYQPKWTIKARVTAKSDIRHWSNARSSGTVFSF 433
Query: 156 DLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLE-A 214
DLLD+ GGEIR C+ D+F+ IEVGRVYLIS+GSLKPAQK +N L +++EI L+
Sbjct: 434 DLLDAQGGEIRAQCWKESADKFFGQIEVGRVYLISRGSLKPAQKKYNTLNHDYEITLDIG 493
Query: 215 TSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQ 274
STV++C+++D+SIP+ Q++FR ISE+E+ N +IVD++G+V SV+PS I+RK G ET+
Sbjct: 494 LSTVEVCSDDDNSIPRLQYNFRQISELENMANETIVDLLGVVTSVSPSATIMRKIGTETR 553
Query: 275 RRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTI 334
+R + LKD SGRS+E+TLWG+FC+ EG +V DF+GKS+ T
Sbjct: 554 KRSIQLKDLSGRSIEVTLWGNFCDAEG-------------------ARVADFNGKSVSTS 594
Query: 335 PSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGR 394
STQL INPDF E LR+W+ + GK A +S+SRE+ G + + KT++QIK+E LGR
Sbjct: 595 GSTQLIINPDFPEVERLRQWYMTEGKTAPCISLSREMLNMG-RTDARKTIAQIKDENLGR 653
Query: 395 SEKPDWVTVRAFITFIKSDSFCYTACP-LMIGDRQCNKKVTQSGN-RWQCDRCNQEIDEC 452
EKPDW+TV+A I+ + ++SFCY ACP L+ RQCNKK +G+ W CDRC++
Sbjct: 654 LEKPDWITVKAAISHVTTESFCYPACPKLLPVGRQCNKKAINNGDGMWHCDRCDESFQNP 713
Query: 453 DYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFN 512
+YRY+L+ QIQD TG T+ +AF E+G +++ L
Sbjct: 714 EYRYMLRFQIQDHTGSTYASAFDEAG-------------VRWHL---------------- 744
Query: 513 QYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLI 554
YLF+LK+KEE Y DEQ +K T ++ ++++ S ES LL I
Sbjct: 745 -YLFKLKVKEETYNDEQSLKCTAVKVEKLDPSKESNVLLGAI 785
>gi|242086611|ref|XP_002439138.1| hypothetical protein SORBIDRAFT_09g001240 [Sorghum bicolor]
gi|241944423|gb|EES17568.1| hypothetical protein SORBIDRAFT_09g001240 [Sorghum bicolor]
Length = 878
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 228/493 (46%), Positives = 329/493 (66%), Gaps = 31/493 (6%)
Query: 93 PY----QPPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARG 148
PY QP N P +N++P I P++ALNPY+ RW I ARVTAK DLR Y+++RG
Sbjct: 341 PYKMRNQPNEQVTNLPPNAENKSPFCITPVSALNPYETRWKIMARVTAKTDLRHYSSSRG 400
Query: 149 DGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEW 208
GKVFSFDLLD GGEIR TCFNA D+F+++IEV +VYLIS GS+KPA KN+N L +E+
Sbjct: 401 PGKVFSFDLLDGQGGEIRATCFNAQADQFFDLIEVDKVYLISNGSVKPALKNYNSLNHEY 460
Query: 209 EIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRK 268
EI L+ +++++C ++D +IP+Q+++FR ISEIE+ E IVD+IGIV SV PS ++RK
Sbjct: 461 EITLDNKTSIEVCVDDDSNIPRQEYNFRQISEIENIEAGVIVDLIGIVTSVGPSAIVMRK 520
Query: 269 NGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSG 328
+G + Q+R L LKD S RS+E+ LWG FC+ EG +LQ + D G P+LS+KSG+V DFSG
Sbjct: 521 DGTQAQKRTLQLKDMSVRSMEIILWGKFCDAEGHQLQLLCDSGSNPILSLKSGRVCDFSG 580
Query: 329 KSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIK 388
+S+ TI STQL +NPDF A L++W+ + GKN A +S+S+ I + ++N + KT++QIK
Sbjct: 581 RSVVTISSTQLKVNPDFPVAKRLKQWYVTEGKNTACISLSQGI-SNMSRNHVLKTIAQIK 639
Query: 389 NEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMI-GDRQCNKKVTQSGNRWQCDRCNQ 447
+E LGRS+KPD++TVRA ++ + +D+FCY AC L + G R C+ + +G R +
Sbjct: 640 DENLGRSDKPDFITVRAVLSHVGADNFCYQACTLELNGKRCCSFEF--NGKRCYKKLVRK 697
Query: 448 EIDECDYRYLLQA-----------------QIQDQTGLTWVTAFQESGEEILGCPAKELY 490
I D L+ I+D TG T+ TAFQE+GE I G A+EL+
Sbjct: 698 PITVIDAIRALKTVIDAIRALKTVIDGIVIDIKDHTGTTYATAFQEAGEVIFGHTAQELF 757
Query: 491 MLKYELQDDVR---FGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSES 547
M++ Q + R F EI+++ ++ +YLF+LK+ E+ Y EQRVK T+I +++ E+
Sbjct: 758 MIRNVEQGEERFKEFTEIMQAIIWREYLFKLKVDEKTYNGEQRVKCTIIGVEKL---EET 814
Query: 548 RYLLDLISKSFRK 560
LL +S+ K
Sbjct: 815 NNLLKDVSRPILK 827
>gi|307109191|gb|EFN57429.1| hypothetical protein CHLNCDRAFT_30347 [Chlorella variabilis]
Length = 721
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 211/468 (45%), Positives = 303/468 (64%), Gaps = 16/468 (3%)
Query: 96 PPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSF 155
PPPN + +NEAP+ I+PI ALN YQ RW IKARVT K D+RRY NARG+GK FSF
Sbjct: 174 PPPN-----QVARNEAPSHIMPINALNSYQNRWTIKARVTNKSDIRRYTNARGEGKFFSF 228
Query: 156 DLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEAT 215
DLLD+ GGEIRV C+N DR+ +I+ G+VYLISK SL+ + NFN ++++EI LE +
Sbjct: 229 DLLDAQGGEIRVVCWNDQCDRWEPVIDQGKVYLISKASLRNKRGNFNQTRHQYEIHLENS 288
Query: 216 STVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQR 275
S V+ C EEDD IP F+F I+ +E + +DVIG+V +V V I +++G +TQ+
Sbjct: 289 SVVEACNEEDD-IPHIYFNFCKIAAVEDTPPGNSLDVIGVVENVMDWVTITKRDGTDTQK 347
Query: 276 RILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIP 335
R L ++D S RS+ELTLWG + N+ G LQ G P++++KS +V DF+GK++ T+
Sbjct: 348 RSLTIRDDSNRSIELTLWGKYANEPGDHLQAAFQNGVHPIVAIKSARVGDFNGKTLSTVA 407
Query: 336 STQLFINP-DFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGR 394
S+ + ++P D EA +LR+W+DSGG ++SR G +N+ T++QIK+EGLG
Sbjct: 408 SSTVMVDPLDVPEAVQLRQWYDSGGATMVAEALSR---PSGGRNDRRITLAQIKDEGLGL 464
Query: 395 SEKPDWVTVRAFITFIKSDSFCYTACPLMIGD-RQCNKKV--TQSGNRWQCDRCNQEIDE 451
EKPDWV V ITF+++++ Y ACP + + RQCNKK+ Q G W C+RCN E
Sbjct: 465 GEKPDWVLVSGAITFLRNENMFYAACPNKLAEGRQCNKKLQDNQDGT-WSCERCNGNF-E 522
Query: 452 CDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVF 511
+YRY+L Q+ D TG WVTAFQE G +I+G A +L ++ L D+ F ++ F
Sbjct: 523 PEYRYMLNFQLSDHTGEAWVTAFQEQGLDIMGRSAADLKDMQQTL-DEGDFSSYMQDLNF 581
Query: 512 NQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKSFR 559
YL +LK+ E+Y DE +++ + + N++ E + LLD+I K R
Sbjct: 582 RHYLMKLKVTNEVYNDETKLRTSAVSVMAPNFTQEGKALLDMIGKMER 629
>gi|449527292|ref|XP_004170646.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like,
partial [Cucumis sativus]
Length = 425
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 177/272 (65%), Positives = 227/272 (83%), Gaps = 2/272 (0%)
Query: 286 RSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDF 345
RSVELTLWG+FC EGQ+LQ M D G FPVL+VKS +V+DF+GK++GTI ++QLFI PDF
Sbjct: 1 RSVELTLWGNFCQAEGQRLQNMCDSGLFPVLAVKSSRVSDFNGKAVGTISTSQLFIEPDF 60
Query: 346 AEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRA 405
EAH LREWF+ G++ +VSISRE+A+ G + ++ KT+SQIK+E LG SEKPDW+TV A
Sbjct: 61 PEAHSLREWFEREGRSTLSVSISREVASVG-RTDVRKTISQIKDERLGTSEKPDWITVSA 119
Query: 406 FITFIKSDSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQD 464
++FIK DSFCYTACP+MIGDRQC+KKVT +G+ +W+CDRC+Q +DECDYRY+LQ QIQD
Sbjct: 120 TVSFIKVDSFCYTACPIMIGDRQCSKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQD 179
Query: 465 QTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEEL 524
TGLTWVTAFQE GEEI+G PAK LY LKYE QDD +F EIIR +F +++ +LKIKEE
Sbjct: 180 HTGLTWVTAFQEGGEEIMGIPAKRLYYLKYEEQDDEKFAEIIRKVLFTKFIMKLKIKEET 239
Query: 525 YGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
+ DEQRV+ TV++A+ +N+SSESR+LL+L+ K
Sbjct: 240 FSDEQRVRSTVVKAESINFSSESRFLLNLMEK 271
>gi|356551666|ref|XP_003544195.1| PREDICTED: LOW QUALITY PROTEIN: replication protein A 70 kDa
DNA-binding subunit-like [Glycine max]
Length = 424
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 182/321 (56%), Positives = 242/321 (75%), Gaps = 2/321 (0%)
Query: 151 KVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEI 210
+VFSFD++DSDGGEIR TCFNAV D+FY +IE G+VYLIS+GS+K AQKNFNHL N+ E+
Sbjct: 95 QVFSFDVVDSDGGEIRPTCFNAVADQFYNVIEAGKVYLISRGSIKLAQKNFNHLHNDQEL 154
Query: 211 FLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNG 270
L+ S + +++DSI F++ ISEIES ENN+IVDVIG+V S+ P+ I+RKNG
Sbjct: 155 TLDVASIIQPFLDDNDSITSHTFNYCPISEIESLENNNIVDVIGVVTSIRPTTSIMRKNG 214
Query: 271 METQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKS 330
+ Q+R L LKD SGRSVELTLWG+FC EG++LQ + G FP+L+ K+ ++NDF+GKS
Sbjct: 215 TKVQKRTLXLKDMSGRSVELTLWGNFCIVEGKRLQTICHAGEFPILATKAVRLNDFNGKS 274
Query: 331 IGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNE 390
+GTI ++QL++ DF EA L+ WF++ GK+ T+SIS E++ G K ++ KT+SQIK+E
Sbjct: 275 VGTIATSQLYVEADFLEACTLKRWFENEGKSVPTLSISTEMSNMG-KTDVRKTISQIKDE 333
Query: 391 GLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEI 449
LG SEKPD ++V ++ IK D+FCY CPL IGDRQCNKKVT + + W C+RCNQ I
Sbjct: 334 KLGTSEKPDRISVFVVVSHIKVDNFCYPGCPLKIGDRQCNKKVTNNADGTWHCERCNQPI 393
Query: 450 DECDYRYLLQAQIQDQTGLTW 470
CD+RYLL QIQD T +TW
Sbjct: 394 SACDFRYLLSMQIQDHTSITW 414
>gi|356554165|ref|XP_003545419.1| PREDICTED: LOW QUALITY PROTEIN: replication protein A 70 kDa
DNA-binding subunit-like [Glycine max]
Length = 450
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 189/343 (55%), Positives = 243/343 (70%), Gaps = 7/343 (2%)
Query: 134 VTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGS 193
V A G R + A +VFSFD+ D DGGEIR TCFN V D+FY +IE G+VYLISKGS
Sbjct: 74 VFAHGVARFLSCAYWVLQVFSFDVADFDGGEIRATCFNVVADQFYNVIEAGKVYLISKGS 133
Query: 194 LKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVI 253
+KPAQKNFNHL N+ E+ L+ S + +++DSI Q F++ ISEIES ENNSIVDVI
Sbjct: 134 IKPAQKNFNHLHNDQELTLDVASIIQPFLDDNDSITSQTFNYXPISEIESLENNSIVDVI 193
Query: 254 GIV-----ISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMV 308
G+V S+ P+ I+RKNG E Q+R L LKD SGRSVELTLWG+FC EGQ+LQ +
Sbjct: 194 GVVTLLDRTSIRPTTSIMRKNGTEVQKRTLQLKDMSGRSVELTLWGNFCIVEGQRLQTIC 253
Query: 309 DVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSIS 368
D G FPVL+ K+ ++NDF+GK + TI ++QL++ DF EA L+ WF + K+ T+SIS
Sbjct: 254 DAGEFPVLATKAVRLNDFNGKYVETIATSQLYVEADFPEACTLKRWFKNEEKSVPTLSIS 313
Query: 369 REIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQ 428
RE++ G K ++ KT+S IK+E LG SEKPDW++V ++ IK D+FCY C L IGDRQ
Sbjct: 314 RELSNLG-KTDVRKTISXIKDEKLGTSEKPDWISVFVVVSHIKVDNFCYPGCLLKIGDRQ 372
Query: 429 CNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQTGLTW 470
CNKKVT + + C+RCNQ ID CD+RYLL QI D T +TW
Sbjct: 373 CNKKVTNNADGTXHCERCNQSIDACDFRYLLSMQIXDHTSITW 415
>gi|302836243|ref|XP_002949682.1| hypothetical protein VOLCADRAFT_104448 [Volvox carteri f.
nagariensis]
gi|300265041|gb|EFJ49234.1| hypothetical protein VOLCADRAFT_104448 [Volvox carteri f.
nagariensis]
Length = 900
Score = 377 bits (967), Expect = e-101, Method: Compositional matrix adjust.
Identities = 200/475 (42%), Positives = 293/475 (61%), Gaps = 18/475 (3%)
Query: 95 QPPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFS 154
+PPP ++ G I ++EAP RI+PI+ALNPY RWAI+ RVT+KG+LRR+ N +G+GKVFS
Sbjct: 225 RPPPQYQAQGAIARDEAPPRIMPISALNPYIARWAIRGRVTSKGELRRWTNVKGEGKVFS 284
Query: 155 FDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEA 214
FDLLD GG+IR T F A D+F+E IEVG +Y ISK SL + FN +++EI L+
Sbjct: 285 FDLLDLAGGDIRATAFGAEADKFFETIEVGAIYQISKASLTQKKPQFNPTSHDYEIRLDR 344
Query: 215 TSTVDLCTEEDDS--IPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGME 272
S V+ E+ ++ IP F+FR I+++E+AE S+VD+IG+V + + I R+ G E
Sbjct: 345 NSLVERVPEDKETSQIPSISFNFRRIADLETAEAGSMVDIIGLVETCDAWQSITRRTGEE 404
Query: 273 TQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIG 332
TQ+R + ++D SGRS+E+TLWG N G ++++MV G PV + K+ +V DF+GK++
Sbjct: 405 TQKRSMVVRDESGRSIEVTLWGPLVNNPGDQIEQMVRSGARPVFAAKALRVGDFNGKTLS 464
Query: 333 TIPSTQLFINP-DFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHK--TVSQIKN 389
TI S+ L I+P D A LR W+D GG++ A S+S GGA + + T S IK
Sbjct: 465 TIGSSVLRIDPMDLPAAQRLRSWYDGGGRSQAVNSLSSAGMGGGAGGKADRRTTFSAIKG 524
Query: 390 EGLGRSEKPDWVTVRAFITFIKSDS-------FCYTACPLMIGDRQCNKKVTQ-SGNRWQ 441
E LG S KPDW+TV A + +K+DS Y +CP R C KK+ G W
Sbjct: 525 EHLGTSGKPDWITVSAVVDMVKTDSQGGGPSAVVYPSCPHDFNGRPCQKKMMDIGGGNWN 584
Query: 442 CDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYE-LQDDV 500
C+RCN + +RYL+ D T ++TAF ++G+ I G A E+ L+ E Q+
Sbjct: 585 CERCNYSTENPAWRYLVSMSACDHTSKQYLTAFGDAGDAIFGRTAAEVRQLEAENTQEFD 644
Query: 501 RFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQV-NYSSESRYLLDLI 554
R E IR F ++FRLK+ E+ Y DE R+K+++ R +++ ++ E +L I
Sbjct: 645 RLTESIR---FTSFIFRLKVAEDHYNDEARIKVSIYRLERLTDFVKEGNLMLQYI 696
>gi|159491651|ref|XP_001703773.1| replication protein A, 70 kDa DNA-binding subunit [Chlamydomonas
reinhardtii]
gi|158270454|gb|EDO96299.1| replication protein A, 70 kDa DNA-binding subunit [Chlamydomonas
reinhardtii]
Length = 451
Score = 370 bits (950), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 192/454 (42%), Positives = 283/454 (62%), Gaps = 11/454 (2%)
Query: 95 QPPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFS 154
+PP N++ +G I +++AP R IPI+ALNPY RWAI+ARVT+KG+LRR+ N RG+GKVFS
Sbjct: 1 RPPANYQANGAIARDDAPPRFIPISALNPYTARWAIRARVTSKGELRRWTNVRGEGKVFS 60
Query: 155 FDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEA 214
FDLLD DGGEIR T F A D+F+E++E G +Y ISK SL + FNH +++EI L+
Sbjct: 61 FDLLDKDGGEIRATAFGAEADKFFEVVEAGAIYQISKASLTNKRPQFNHTNHQYEIKLDR 120
Query: 215 TSTVDLCTE--EDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGME 272
S V+ E E IP ++FR I+++E+AE ++VD+IG+V + P I R+ G E
Sbjct: 121 NSMVERVAEDPETSQIPTISYNFRRITDLETAEAGTVVDIIGVVETCEPWQTITRRTGEE 180
Query: 273 TQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIG 332
TQ+R + ++D SGRS+E+TLWG N G ++++MV G PVL+ K+ +V D++GK++
Sbjct: 181 TQKRSMVVRDDSGRSIEVTLWGALVNNPGDQIEQMVRGGGRPVLAAKALRVGDYNGKTLS 240
Query: 333 TIPSTQLFINP-DFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTV-SQIKNE 390
T+ ++ L ++P D A +R W++ GGK A S+S GG +TV S IK+E
Sbjct: 241 TVGASALRLDPMDLPAAQRVRGWYNGGGKAQAVNSLSAAGGGGGGGRTDRRTVLSAIKDE 300
Query: 391 GLGRSEKPDWVTVRAFITFIK--SDSFCYTACPLMIGDRQCNKKVTQ-SGNRWQCDRCNQ 447
LGRS K DWV V A + IK + + Y +CP R C KK+ G W CDRC
Sbjct: 301 NLGRSGKADWVNVSAVLDMIKGGASAVVYPSCPHDFNGRPCQKKMMDVGGGNWNCDRCQF 360
Query: 448 EIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYEL-QDDVRFGEII 506
+ +RYL+ D T +TAF ++G+ I G A E+ ++ + Q+ R E I
Sbjct: 361 STENPAWRYLVSLSACDHTAKQSLTAFGDAGDAIFGRSATEVRNMEVDRPQEFDRLAESI 420
Query: 507 RSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQ 540
R F + FRLK+ E+ Y DEQR+K+++ + ++
Sbjct: 421 R---FTPFFFRLKVAEDNYNDEQRIKVSIYKMER 451
>gi|384246948|gb|EIE20436.1| replication factor-a protein [Coccomyxa subellipsoidea C-169]
Length = 630
Score = 355 bits (912), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 193/455 (42%), Positives = 283/455 (62%), Gaps = 19/455 (4%)
Query: 99 NFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNA------RGDGKV 152
N++ HGPI +NEAP RI+PI++LN YQ W IKAR+T K ++RRY+NA GK+
Sbjct: 179 NYKGHGPIARNEAPPRIVPISSLNSYQSHWTIKARITNKSEIRRYSNAPKCAWCMHAGKL 238
Query: 153 FSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKN--FNHLKNEWEI 210
FSF+LLD+ GGEIR FN VD+F I++ G V ++SK SLK + FN+ ++++EI
Sbjct: 239 FSFELLDAQGGEIRGCGFNQCVDKFEPIMQQGAVIMMSKASLKNKKPGSAFNNTRHDYEI 298
Query: 211 FLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNG 270
LE + +++C E++ +IPK Q+ F + E+ N VD+IGIV V+PS I + G
Sbjct: 299 TLEPNTVIEVCEEDERAIPKMQYHFIKVKELNDKFANETVDIIGIVDKVDPSAVIQTREG 358
Query: 271 METQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKS 330
E +R ++++D SG SVE+TLWG + ++ G +L+E+ + G VL++K+ K+ D++G++
Sbjct: 359 KELMKRNISIRDDSGASVEITLWGTYSSEPGDQLEEVFNGGVHSVLALKNAKIGDYNGRT 418
Query: 331 IGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSI---SREIAAGGAKNEIHKTVSQI 387
+ T+ +T L ++PD EA LR WFDS G AA VS + GG K + T++ I
Sbjct: 419 LSTVSTTTLTVDPDVPEAGHLRHWFDSAGGAAAPVSALTSGSGASVGGGKGDRRVTLATI 478
Query: 388 KNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSG-----NRWQC 442
K E LG + WV + ITF+KSD Y AC L +QCNKKVT SG NRW C
Sbjct: 479 KEEALGTNSTNAWVQIVCTITFVKSDPIAYPACTLQYNGKQCNKKVTDSGGGDGPNRWWC 538
Query: 443 DRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRF 502
+RC+ E +YRY+L I+D +G WVTAFQE G++I+G A E+ LK + F
Sbjct: 539 ERCSAAC-EAEYRYMLNLNIEDHSGKEWVTAFQEEGKQIIGYTANEMQELKE--AESPLF 595
Query: 503 GEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIR 537
+ YLF+LK+ E+ + DEQR++I V+R
Sbjct: 596 EARLNDVKCRSYLFKLKVSEDTWQDEQRIRINVVR 630
>gi|255076569|ref|XP_002501959.1| predicted protein [Micromonas sp. RCC299]
gi|226517223|gb|ACO63217.1| predicted protein [Micromonas sp. RCC299]
Length = 867
Score = 354 bits (908), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 190/470 (40%), Positives = 292/470 (62%), Gaps = 13/470 (2%)
Query: 97 PPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFD 156
PP + N G +++NEAP RI PI++LNPY RW I+ RVT + +R ++NARGDGKV + D
Sbjct: 216 PPQYSNRGAVMRNEAPHRITPISSLNPYMNRWTIRVRVTNQPAIRTWHNARGDGKVLNVD 275
Query: 157 LLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATS 216
LLDS+GGEI+ CFN ++F ++ + GRVY ISKG++ + E+EI L+ TS
Sbjct: 276 LLDSEGGEIKAVCFNDTAEKFSQVFQGGRVYDISKGAISQVKNKKYSGGAEFEIRLDNTS 335
Query: 217 TVDLCTEEDD--SIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQ 274
VD T+ SI K ++F+ I+ IE A ++DVIG+V +V I++++G ET
Sbjct: 336 LVDEVTDPQAVASIKKIHYNFQKIASIEDAMVGGMIDVIGVVHTVGDLATIMKRDGGETS 395
Query: 275 RRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTI 334
+R ++++D SG SVELT+W G KL+ MV+ G PVL+VK+G+V +F GK+IGT+
Sbjct: 396 KRSVHIRDDSGASVELTMWAPHAVDIGGKLEAMVNGGEHPVLAVKNGRVGEFQGKNIGTV 455
Query: 335 PSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNE--GL 392
ST + +NPD EA +LR W+D+ G ATV+ GG K + +++Q+K+E +
Sbjct: 456 GSTNIDVNPDLTEAAKLRHWYDAEGGATATVATLGGGGGGGGKGDRCVSIAQLKDEIAQI 515
Query: 393 GRSEKPDWVTVRAFITFIKS--DSF-CYTACPLMIGDRQCNKKV--TQSGNRWQCDRCNQ 447
G + P WV R IT+IK+ DS Y ACPL GDR C KK+ ++ W C+R +
Sbjct: 516 G-ANPPFWVQCRCHITYIKAPQDSGPYYPACPLQNGDRMCQKKLRFDEAQGSWNCERHSG 574
Query: 448 E-IDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEII 506
E + C++RY+L + D TG WV+AF + G+ I+G A EL+ L + + + + +
Sbjct: 575 EHVPHCEWRYILNMTVSDHTGQHWVSAFGDQGDVIMGMKASELHRLYND--NHAAYEQAL 632
Query: 507 RSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
++ F ++ +LK+KE+ Y E R K + R + ++Y +ES+ +LD I+K
Sbjct: 633 QNANFTSHMMKLKVKEDNYNGETRPKTELSRIEVIDYVAESKRMLDKIAK 682
>gi|167621451|ref|NP_956105.2| replication protein A 70 kDa DNA-binding subunit [Danio rerio]
gi|82185887|sp|Q6NY74.1|RFA1_DANRE RecName: Full=Replication protein A 70 kDa DNA-binding subunit;
Short=RP-A p70; AltName: Full=Replication factor A
protein 1; Short=RF-A protein 1
gi|44890707|gb|AAH66711.1| Rpa1 protein [Danio rerio]
gi|49619041|gb|AAT68105.1| replication protein A 70kd subunit [Danio rerio]
Length = 601
Score = 330 bits (847), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 185/508 (36%), Positives = 290/508 (57%), Gaps = 28/508 (5%)
Query: 61 QNPGSFSTPN---SGTFRAPNAGS--IVRSFQP---TVQPPYQPPPNFRNHGPILKNEAP 112
Q PG P G +AP+ R QP + Y+P P+ P
Sbjct: 106 QMPGKIGDPTPYVEGQSKAPSTAPAPTARPLQPQNGSDGSTYRPSAQSFGKKPMAAPNTP 165
Query: 113 ---ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTC 169
++++PIA+LNPYQ +W I+ARVT K +R ++N+RGDGK+FS +L+D + GEIR T
Sbjct: 166 GGSSKVVPIASLNPYQSKWTIRARVTNKSAIRTWSNSRGDGKLFSMELVD-ESGEIRATG 224
Query: 170 FNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIP 229
FN VD+F+ +IE G+V+ ISKG+LK A K F+ LKN++E+ L +++ C + +D +P
Sbjct: 225 FNNEVDKFFSLIEQGKVFYISKGTLKIANKQFSSLKNDYEMTLNGETSIIPCEDSND-VP 283
Query: 230 KQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVE 289
Q F I+++ES E ++I+DVIG+ + I+ KN E +R + L D SGR ++
Sbjct: 284 MLQCDFVSIADLESREKDTILDVIGVCKNAEDVARIMTKNSREVSKRNIQLIDMSGRVIQ 343
Query: 290 LTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAH 349
LT+WG E D P+L++K +++DF G+S+ T+ S+ + INPD EA+
Sbjct: 344 LTMWGSDA--------ETFDGSGQPILAIKGARLSDFGGRSLSTLYSSTVMINPDIPEAY 395
Query: 350 ELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITF 409
+LR W+D G S++ GG N KT++++KNE LG +K D+ + A I +
Sbjct: 396 KLRGWYDKEGHALDGQSMTELRGPGGGGNTNWKTLAEVKNEHLGHGDKADYFSCIATIVY 455
Query: 410 IKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGL 468
I+ ++ Y ACP + CNKKV Q ++C++C++E + YR +L A I D
Sbjct: 456 IRKENCLYQACP----SKDCNKKVVDQQNGMFRCEKCDKEFPDFKYRLMLSANIADFGDN 511
Query: 469 TWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDE 528
WVT FQ++ E +LG + L LK ++ F E+ + FN ++FR ++K E Y DE
Sbjct: 512 QWVTCFQDTAETLLGQNSSYLGQLKD--TNEAAFDEVFQHANFNTFVFRNRVKLETYNDE 569
Query: 529 QRVKITVIRADQVNYSSESRYLLDLISK 556
R+K+TV+ A V++ S+ L+ I K
Sbjct: 570 SRIKVTVVDAKPVDHREYSKRLIINIRK 597
>gi|348505238|ref|XP_003440168.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Oreochromis niloticus]
Length = 606
Score = 328 bits (842), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 183/470 (38%), Positives = 274/470 (58%), Gaps = 20/470 (4%)
Query: 91 QPPYQPPPNFRNHGPILKNEAP---ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNAR 147
QPP +F P + P ++++PIA+LNPYQ +W I+ARVT K +R ++N+R
Sbjct: 148 QPPSSSAQDFGKKAPSVMPNTPGGSSKVVPIASLNPYQSKWTIRARVTNKSAIRTWSNSR 207
Query: 148 GDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNE 207
GDGK+FS +++D + GEIRVT FN VD+F+ +IE G+VY ISKGSLK A K + +KN+
Sbjct: 208 GDGKLFSMEIVD-ESGEIRVTGFNQEVDKFFSLIEAGKVYYISKGSLKIANKQYTSVKND 266
Query: 208 WEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILR 267
+E+ L ST+ C + D +P Q F IS++E+ + ++IVDVIG+ SV+ +
Sbjct: 267 YEMTLNGESTIIPCEDSCD-VPMVQCDFVSISDLENRDKDAIVDVIGVCKSVDDITRLTT 325
Query: 268 KNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFS 327
K+ E +R L+L D SG+ V +TLWG+ E +K D PV+++K K++DF
Sbjct: 326 KSNREVSKRTLSLMDMSGKVVTVTLWGE----EAEKF----DGSSQPVIAIKGAKLSDFG 377
Query: 328 GKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQI 387
G+S+ S+ L INPD EA++LR W+D G S++ G N K+++ +
Sbjct: 378 GRSLSASFSSTLMINPDIPEAYKLRGWYDKEGHAMDGQSLTEVKGGSGGGNTNWKSLADV 437
Query: 388 KNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCN 446
K E LG +K D+ T A I F++ ++ Y ACP + CNKKV Q ++C++C+
Sbjct: 438 KTEHLGHGDKADYYTCVATIVFLRKENCLYQACP----SQDCNKKVVDQQNGMFRCEKCD 493
Query: 447 QEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEII 506
+E YR +L A I D WVT FQES E ILG A L LK ++ F E+
Sbjct: 494 KEFPNFKYRLILSANIADYGDNQWVTCFQESAEAILGQNAAYLGQLKD--SNEAAFDEVF 551
Query: 507 RSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
+ FN ++FR ++K E Y DE R+K TV+ V++ S+ L+ I K
Sbjct: 552 QHANFNTFVFRNRVKLETYNDESRIKATVMDVKPVDHKEYSKRLILNIRK 601
>gi|303276565|ref|XP_003057576.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460233|gb|EEH57527.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 835
Score = 327 bits (838), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 180/482 (37%), Positives = 288/482 (59%), Gaps = 26/482 (5%)
Query: 95 QPPPNFRNHG--PILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKV 152
+PPP++ +G P +N+APA+I PI++LNPY RW I+ARVT ++R Y+N +GDGKV
Sbjct: 204 EPPPSYGAYGRGPTARNDAPAKISPISSLNPYNNRWTIRARVTNNPEIRTYHNHKGDGKV 263
Query: 153 FSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFL 212
F+ +LLD++GGEI+ F +RF ++ G VY +SKG ++P +N E+E+ L
Sbjct: 264 FNVELLDAEGGEIKAVAFGDTAERFADVFRAGSVYELSKGQIRPV-RNPKFSVGEFEMML 322
Query: 213 EATSTVDLCTEEDD-----SIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILR 267
+ + V E DD SI + ++F+ I++++ + S+VDV +V V I++
Sbjct: 323 DHNTEV---REIDDPAVVGSIKRVNYAFKKIADVDHISSGSLVDVCAVVHHVGELNTIMK 379
Query: 268 KNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFS 327
++G ET +R + L+D SG S+ELTLW G +L+ +V+ G PV+++K+G+V DF
Sbjct: 380 RDGGETSKRSITLRDDSGASIELTLWAPQALDIGGRLEGLVNDGDHPVIAIKNGRVGDFQ 439
Query: 328 GKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSI-SREIAAGGAKNEIHKTVSQ 386
GK+IGTI S+++ INPD EA LR W+D+GG A + + GG + + T++Q
Sbjct: 440 GKNIGTINSSRVDINPDVDEAARLRHWYDTGGATAEVKAFSGAGASGGGGRGDRCVTIAQ 499
Query: 387 IKNEGLGRSEKPD-WVTVRAFITFIK-SDSFC-YTACPLMIGDRQCNKKV--TQSGNRWQ 441
+K E P WV R +T++K SD+ C Y ACPL G+R C KK+ ++ W
Sbjct: 500 LKEEIARDGATPAFWVQCRCHVTYLKSSDAGCFYPACPLRNGERMCQKKLRYDEAMGTWN 559
Query: 442 CDR-CNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPA---KELYMLKYELQ 497
C+R + + C++RY++ + D TG WV+AF ++G+ I+G A KEL Y+
Sbjct: 560 CERHAGEHVPNCEWRYIINMTVADHTGQQWVSAFGDTGDVIMGMTAGALKELMDTNYDA- 618
Query: 498 DDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKS 557
+ + I F Q+L + K+ ++ Y DE RVK+++ + D ++Y SES+ +LD I K
Sbjct: 619 ----YEKAIADANFKQFLMKFKVADDTYNDETRVKVSLNKLDAIDYVSESKRMLDQIGKL 674
Query: 558 FR 559
R
Sbjct: 675 RR 676
>gi|348540235|ref|XP_003457593.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Oreochromis niloticus]
Length = 665
Score = 327 bits (838), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 174/448 (38%), Positives = 268/448 (59%), Gaps = 17/448 (3%)
Query: 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
A++IPIA+LNPYQ +W I+ARVT K +R ++N+RG+GK+FSF+++D + GEIR+T FN
Sbjct: 234 AKVIPIASLNPYQSKWTIRARVTNKSSIRTWSNSRGEGKLFSFEIVD-ESGEIRITAFNK 292
Query: 173 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQ 232
VD+F+ ++E G+VY ISK +LKPA K + LKN++E+ L A S++ C +++ SIP
Sbjct: 293 EVDKFFSLVEQGKVYYISKATLKPANKQYTTLKNDYEMTLHAHSSIVPC-DDNQSIPTVH 351
Query: 233 FSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTL 292
F I+E+E+ + ++I+DVIGI S I KN E +R L++ D +G+ V +TL
Sbjct: 352 CDFVPIAELENRDKDAIIDVIGICKSAEDVSRITTKNSREVSKRALSIIDQTGKVVTVTL 411
Query: 293 WGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELR 352
WG+ E D PV+++K +++DF G+S+ + S+ + +NPD +A LR
Sbjct: 412 WGEEA--------ENFDGSTQPVVAIKGARLSDFGGRSLSALFSSTVMVNPDIPQAFRLR 463
Query: 353 EWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKS 412
W+D G + S++ +AG N KT+S IKNE +G EK + + A + +I+
Sbjct: 464 AWYDREGFAINSQSLTETRSAGTGLNVNWKTLSDIKNEDMGHGEKAQYFSCVATVLYIRK 523
Query: 413 DSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWV 471
++ Y ACP CNKKV Q ++C++CN+E YR LL A + D WV
Sbjct: 524 ENCLYQACP----SADCNKKVIDQQNGLYRCEKCNREFPNFKYRLLLSANLADFGDNQWV 579
Query: 472 TAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRV 531
T FQE+ E +LG A+ L L+ D+ F E+ + F ++F+ ++K E Y DE RV
Sbjct: 580 TCFQETAEALLGHSAETLGHLRD--TDEAAFDEVFQKANFTTHIFKNRVKLETYNDESRV 637
Query: 532 KITVIRADQVNYSSESRYLLDLISKSFR 559
K+TV+ V++ SR LL I K R
Sbjct: 638 KVTVMEVQPVDHREYSRRLLQNIYKLAR 665
>gi|410910178|ref|XP_003968567.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Takifugu rubripes]
Length = 600
Score = 326 bits (836), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 182/480 (37%), Positives = 274/480 (57%), Gaps = 30/480 (6%)
Query: 91 QPPYQP----------PPNFRNHGPILKNEAP---ARIIPIAALNPYQGRWAIKARVTAK 137
+PP QP +F GP P ++++PIA+LNPYQ +W I+ARVT K
Sbjct: 133 RPPLQPQNRNEMNRGFSKDFGKKGPAAMPSTPGGGSKVVPIASLNPYQSKWTIRARVTNK 192
Query: 138 GDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPA 197
+R ++N+RGDGK+F+ +L+D + GEIR+T FN VD+F+ +IE G+VY ISK SLK A
Sbjct: 193 SSIRTWSNSRGDGKLFTVELVD-ESGEIRMTAFNQEVDKFFGLIEAGKVYYISKCSLKIA 251
Query: 198 QKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVI 257
K + +KN++E+ L S++ C + D +P Q F I ++E+ E +SIVDVIG+
Sbjct: 252 NKQYTSVKNDYEMTLNGESSIVPCEDSCD-VPMVQCDFVSIGDLENKEKDSIVDVIGVCK 310
Query: 258 SVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLS 317
+ + K+ E +R L+L D SG+ V +TLWG+ E +K D P+++
Sbjct: 311 KTDEATHFTSKSNREMSKRTLHLIDMSGKLVTVTLWGE----EAEKF----DGSGEPIIA 362
Query: 318 VKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAK 377
+K K++DF G S+ S+ L +NPD EAH+LR W+D G + S++ + GG
Sbjct: 363 IKGAKLSDFGGCSLSASFSSTLMVNPDIPEAHKLRGWYDKEGHSMEGQSLTEMRSGGGGG 422
Query: 378 NEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT-QS 436
N KT++ +K E LG EK D+ T A I +++ ++ Y ACP + CNKKV Q
Sbjct: 423 NTNWKTLTDVKTEHLGHGEKADYYTCIATIVYLRKENCLYQACP----SQDCNKKVVDQQ 478
Query: 437 GNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYEL 496
++C++C++E YR +L A I D WVT FQES E ILG A L LK
Sbjct: 479 NGMFRCEKCDKEFPNFKYRLILSANIADYGDNQWVTCFQESAEAILGQNAAYLGQLKE-- 536
Query: 497 QDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
++ F E+ + FN ++FR ++K E Y DE R+K TV+ V++ S+ L+ I K
Sbjct: 537 SNEAAFDEVFQQANFNSFIFRSRVKLETYNDESRIKATVMEVKPVDHKDYSKRLIMNIRK 596
>gi|410915298|ref|XP_003971124.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Takifugu rubripes]
Length = 570
Score = 325 bits (834), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 173/442 (39%), Positives = 263/442 (59%), Gaps = 19/442 (4%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
+IPIA LNPYQ +W I+ARV K +R +NN+RG+GK+FSF+++D + GE+++T FN V
Sbjct: 141 MIPIAQLNPYQSKWTIRARVMNKSSIRTWNNSRGEGKLFSFEIVD-ESGEMKITAFNKEV 199
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
D+F+ ++E G+VY ISK +LK A K +N LK+++E+ L A S++ C + D IP Q
Sbjct: 200 DKFFSLVEQGKVYYISKATLKVANKQYNTLKHDYEMTLHAHSSIMPCADGQD-IPAVQCD 258
Query: 235 FRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWG 294
F I+E+E+ + ++I+DVIG+ + I K+ E +R L+L DT+G+ V TLWG
Sbjct: 259 FVPIAELENRDKDAIIDVIGVCKTAEDVSRITTKSSREVSKRTLHLIDTTGKMVAATLWG 318
Query: 295 DFCNK-EGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELRE 353
+ K EG + PV+++K +++DF G+S+ + S+ + +NPD EA LR
Sbjct: 319 EEAEKFEGSEQ---------PVVAIKGARLSDFGGRSLSALFSSTVMVNPDIPEAFRLRA 369
Query: 354 WFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSD 413
W+D GG A+ S+S + G KT+S +KNE LG EK D+ + A + + + D
Sbjct: 370 WYDQGGYALASQSLSETKSGGSGMRMNWKTLSDVKNENLGHGEKADYFSCVATLLYSRKD 429
Query: 414 SFCYTACPLMIGDRQCNKKVTQSGNRW-QCDRCNQEIDECDYRYLLQAQIQDQTGLTWVT 472
+ Y ACP + CNKKV N W +C++CN+E YR LL A + D WVT
Sbjct: 430 TCLYRACPSV----DCNKKVLDQHNGWFRCEKCNREFPNFKYRLLLSANLADFGDNQWVT 485
Query: 473 AFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVK 532
FQE+ E +LG A+ L L+ D+ F + + F ++F+ ++K E Y DE RVK
Sbjct: 486 CFQETAEALLGHSAETLGQLRD--TDEAAFDAVFQKANFTTHIFKNRVKLETYNDESRVK 543
Query: 533 ITVIRADQVNYSSESRYLLDLI 554
+TV+ VN+ SR LL I
Sbjct: 544 VTVMEVQPVNHREYSRMLLSNI 565
>gi|156369841|ref|XP_001628182.1| predicted protein [Nematostella vectensis]
gi|156215152|gb|EDO36119.1| predicted protein [Nematostella vectensis]
Length = 626
Score = 325 bits (832), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 169/460 (36%), Positives = 283/460 (61%), Gaps = 17/460 (3%)
Query: 100 FRNHGPILKNEAPAR-IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL 158
++++ P+ + A+ + PI+ L PYQ RW I+AR+T+K ++R +NN+RG+G++F+ +++
Sbjct: 177 YKSNQPVNRGGDGAKTVFPISGLTPYQNRWTIRARITSKSNIRTWNNSRGEGRLFNVEMV 236
Query: 159 DSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTV 218
D + GEIR T FN VD+FY+++EV +V+ I+KGSL+ A K ++ ++N++E++L + +
Sbjct: 237 D-ESGEIRATGFNEAVDKFYQMLEVDKVFYITKGSLRTANKQYSSIRNDYEMYLNNDTII 295
Query: 219 DLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRK-NGMETQRRI 277
+ C E + +P Q++F +I ++E+ + IVD++G+V +V I K + +R
Sbjct: 296 EPCNETCN-LPTLQYNFVNIGDLENINKDQIVDILGVVTNVGDLAQITTKTTNKQVSKRD 354
Query: 278 LNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPST 337
+ L D S +SV TLWGD E +K +E G PVL+++ KV+DF G+S+ + S+
Sbjct: 355 ITLLDRSEKSVTATLWGD----EAEKFEE--HAGKNPVLAIRGAKVSDFGGRSLSVLNSS 408
Query: 338 QLFINP-DFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSE 396
+ +NP D EA LR W+D+ GKN SIS + + G + K +SQIKNE LG E
Sbjct: 409 NMRVNPVDMKEAQVLRGWYDNTGKNNEVASISGQRYSAGGGGPL-KFLSQIKNEQLGMGE 467
Query: 397 KPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRY 456
K D+++V+ + + ++ Y ACP +CNKKV + + + C++C ++ YR
Sbjct: 468 KADYISVKGVCVYFRRENCMYKACP----SEECNKKVIEEDSGFYCEKCGRKYPNYKYRL 523
Query: 457 LLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLF 516
+L A + D TG WVT FQES E +LG A +L +K E QD+ +F ++ S F + F
Sbjct: 524 ILSAHLADFTGSQWVTCFQESAEALLGRSASDLGQMK-ENQDEAQFDQVFASSEFKLHTF 582
Query: 517 RLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
+++ K E Y +E R+K +V+ VNY ES+ L+D + K
Sbjct: 583 KIRAKMETYNEETRLKCSVVNVVPVNYKQESKRLIDEVKK 622
>gi|196010750|ref|XP_002115239.1| hypothetical protein TRIADDRAFT_50671 [Trichoplax adhaerens]
gi|190582010|gb|EDV22084.1| hypothetical protein TRIADDRAFT_50671 [Trichoplax adhaerens]
Length = 556
Score = 324 bits (830), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 173/469 (36%), Positives = 270/469 (57%), Gaps = 20/469 (4%)
Query: 91 QPPYQPPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDG 150
Q P P ++ + PI++L PYQ RW I+ RVT+K ++R+++N+RG+G
Sbjct: 101 QSVTNPRPTIHPQQNLVDKSENRIVFPISSLTPYQNRWTIRTRVTSKSEIRKWSNSRGEG 160
Query: 151 KVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEI 210
K+FS DL+D + GEIR T F V++FY+++EV +VY IS+ S+K A KNF +KN++E+
Sbjct: 161 KLFSVDLID-ESGEIRATAFRDQVEKFYDVLEVNKVYYISRCSIKTANKNFTSIKNDYEM 219
Query: 211 FLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNG 270
+ V+ C ++ S+PK F+F I +IE+ ++DV+G+V S + V I K+
Sbjct: 220 TFTNETAVEPC-DDIASLPKVSFNFVRIGDIENQPAERMIDVVGVVKSADDVVTINTKSN 278
Query: 271 METQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKS 330
+ +R + L D SG+ V LTLWG E D FPV++V+ +V +F G+S
Sbjct: 279 RQVNKRDIELVDDSGKVVRLTLWGTNA--------EEFDGSQFPVVAVRGARVTEFGGRS 330
Query: 331 IGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISR---EIAAGGAKNEIHKTVSQI 387
+ + S+QL NPD EAH LR WFD GK+ VSIS +I + G K +S I
Sbjct: 331 LSVVGSSQLMTNPDIPEAHILRGWFDVQGKDQELVSISTKRGDIGSPGFSGN-WKNISDI 389
Query: 388 KNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQ 447
E LG+ EK D+ ++A I +I+ ++ Y ACP CNKKV G ++C++CNQ
Sbjct: 390 HGENLGQQEKADYFNLKATIIYIRKENLMYKACP----KEDCNKKVIDQGGSYRCEKCNQ 445
Query: 448 EIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIR 507
+ YR ++ A I D TG W+T FQE+GE +L C A++L K D+ ++ I
Sbjct: 446 TFPDFKYRLMISASIVDSTGSNWLTFFQETGEAMLKCTAQQLGAWKE--NDESKYEHTIN 503
Query: 508 SRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
+F Y+ +++ K E + DE R+K + + ++Y +SR LL+ I +
Sbjct: 504 EALFQSYILKVRAKMESFNDENRLKCSCVNLTPMDYVQQSRRLLEGIRR 552
>gi|225457192|ref|XP_002283959.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit isoform
1 [Vitis vinifera]
Length = 625
Score = 323 bits (829), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 181/499 (36%), Positives = 287/499 (57%), Gaps = 25/499 (5%)
Query: 68 TPNSGTFRAPNAGSIVRSFQPTVQPPYQPPPNFRNHGPILKNEAPARIIPIAALNPYQGR 127
T +G F P + +S V + N P + R+ P+ +LNPYQG
Sbjct: 137 TEGTGIFLKPKQEIVAKSAAQIVNEQHG------NMAPAARMAMTRRVHPLVSLNPYQGN 190
Query: 128 WAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVY 187
W IK R+T KG +R Y NARG+G VF+ +L D DG +I+ T FN +FYE ++G+VY
Sbjct: 191 WTIKVRLTNKGTMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFYEKFQLGKVY 250
Query: 188 LISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAEN- 246
ISKG+LK A K F ++N++E+ L S V+ + E+ IP+ +F F I E+ N
Sbjct: 251 YISKGALKVANKQFKTVQNDYEMTLNENSEVEEASNEETFIPEAKFKFVEIEELGPYVNG 310
Query: 247 NSIVDVIGIVISVNPSVPILRKNGME-TQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQ 305
+VDVIG+V SV+P++ I RK+ + +R + + D + ++V ++LW D GQ+L
Sbjct: 311 KELVDVIGVVQSVSPTMSIRRKSNNDIVPKRDITIADKTKKTVVVSLWNDHATNVGQELL 370
Query: 306 EMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATV 365
+ D FP++++KS KV DF G S+ T+ + + +NPD E+ +LR W+DS GK A+
Sbjct: 371 DNADK--FPIVAIKSLKVGDFQGVSLSTLSKSIVLVNPDTPESKKLRSWYDSEGKGASMA 428
Query: 366 SISREI---AAGGAKNEIHKTVSQ---IKNEGLGRSEKPDWVTVRAFITFIKSD-SFCYT 418
SI +I + GG K+ + VS N LG +KP + ++RA+I+FIK D + Y
Sbjct: 429 SIGSDISPSSKGGVKSMYYDRVSLSHVTSNPSLGE-DKPSFFSIRAYISFIKPDQTMWYR 487
Query: 419 ACPLMIGDRQCNKKVTQS-GNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQES 477
AC + CNKKVT + G+ + C+ C + DEC RY++ ++ D +G W++ F E
Sbjct: 488 AC------KTCNKKVTDAIGSGYWCEGCQKNDDECSLRYIMVVKVSDASGEAWLSLFNEQ 541
Query: 478 GEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIR 537
E + GC A EL LK + ++ F + ++ ++ +LFR+ + + Y +E+R +IT
Sbjct: 542 AERMFGCSADELDKLKSQEGEENLFQQKLKEAIWVPHLFRISVAQHEYMNEKRQRITARA 601
Query: 538 ADQVNYSSESRYLLDLISK 556
V++++ESR LL+ ISK
Sbjct: 602 VVPVDFAAESRLLLEEISK 620
>gi|432895940|ref|XP_004076236.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Oryzias latipes]
Length = 655
Score = 323 bits (828), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 169/466 (36%), Positives = 276/466 (59%), Gaps = 18/466 (3%)
Query: 93 PYQPPPNFRNHGPI-LKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGK 151
P + P + P+ + +P ++ PI+ LNPYQ +W I+ARVT K ++R+++N+RG+GK
Sbjct: 203 PMKSSPAKDTNSPMKASSSSPMKVFPISTLNPYQSKWTIRARVTNKSNVRQWSNSRGEGK 262
Query: 152 VFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIF 211
+FSF+++D + GEI++T FN VD+F+ ++E G+VY ISK +LK A K ++ LKN++E+
Sbjct: 263 LFSFEVVD-ESGEIKITAFNNEVDKFFSLLEQGKVYYISKATLKVANKQYSTLKNDYEMT 321
Query: 212 LEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGM 271
L A S++ C E++ SIP +F I E+E+ + ++I+DVIGI I KN
Sbjct: 322 LHAHSSIVPC-EDNQSIPTMNCNFVQIEELENRDKDAIIDVIGICKKAEDVSRITTKNSR 380
Query: 272 ETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSI 331
E +R L+L D+SG+ V TLWG+ E +K D PV+++K +++DF G+S+
Sbjct: 381 EVSKRALHLIDSSGKEVTATLWGE----EAEKF----DGSGQPVVAIKGARLSDFGGRSL 432
Query: 332 GTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEG 391
+ S+ + +NPD EA LR W+D G + S++ + KT+S +KNE
Sbjct: 433 SALFSSTIMVNPDIPEAFRLRAWYDREGYAVNSQSLTERRSTNSGSRMNWKTLSDVKNEN 492
Query: 392 LGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKV-TQSGNRWQCDRCNQEID 450
+G +K ++ + A + +++ ++ Y ACP CNKKV Q ++C++CN+E
Sbjct: 493 MGHEDKAEYFSCLATVVYMRKENCLYQACP----SADCNKKVIIQHNGLYRCEKCNREFS 548
Query: 451 ECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRV 510
+ YR+LL A + D WVT FQE+ E +LG A+ L L+ D+ F E+ +
Sbjct: 549 DFKYRFLLSANLADFGDNQWVTCFQETAEVLLGHSAQTLGQLRE--TDEAAFDEVFQKAN 606
Query: 511 FNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
F ++F+ ++K E Y DE RVK+TV+ V++ SR LL I +
Sbjct: 607 FRTHIFKNRVKLETYNDESRVKVTVMEVLPVDHREYSRRLLSNIRR 652
>gi|332257541|ref|XP_003277864.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit
[Nomascus leucogenys]
Length = 616
Score = 323 bits (827), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 183/477 (38%), Positives = 279/477 (58%), Gaps = 23/477 (4%)
Query: 88 PTVQPPYQPPPNF-RNHGPILKNEAP---ARIIPIAALNPYQGRWAIKARVTAKGDLRRY 143
PTV Y F + GP L + + ++++PIA+L PYQ +W I ARVT K +R +
Sbjct: 153 PTVSKAYGASKTFGKAAGPSLSHTSAGTQSKVVPIASLTPYQSKWTICARVTNKSQIRTW 212
Query: 144 NNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNH 203
+N+RG+GK+FS +L+D + GEIR T FN VD+F+ +IEV +VY SKG+LK A K F
Sbjct: 213 SNSRGEGKLFSLELVD-ESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTA 271
Query: 204 LKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSV 263
+KN++E+ ++V C E+D +P QF F I ++E+ +S+VD+IGI S +
Sbjct: 272 VKNDYEMTFNNETSVMPC-EDDHHLPTVQFDFTGIDDLENKSKDSLVDIIGICKSYEDAT 330
Query: 264 PI-LRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGK 322
I +R N E +R + L DTSG+ V TLWG+ +K Q PVL++K +
Sbjct: 331 KITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQ--------PVLAIKGAR 382
Query: 323 VNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAG-GAKNEIH 381
V+DF G+S+ + S+ + +NPD EA++LR WFD+ G+ VSIS + G G N
Sbjct: 383 VSDFGGRSLSVLSSSTIIVNPDIPEAYKLRGWFDAEGQALDGVSISDLKSGGVGGANTNW 442
Query: 382 KTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRW 440
KT+ ++K+E LG+ +KPD+ + A + +++ ++ Y ACP + CNKKV Q +
Sbjct: 443 KTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPT----QDCNKKVIDQQNGLY 498
Query: 441 QCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDV 500
+C++C+ E YR +L I D WVT FQES E ILG A L LK +++
Sbjct: 499 RCEKCDTEFPSFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKD--KNEQ 556
Query: 501 RFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKS 557
F E+ ++ F ++FR+++K E Y DE R+K TV+ V+Y R L+ I +S
Sbjct: 557 AFEEVFQNANFRSFIFRVRVKVETYNDESRIKATVMDVKPVDYREYGRRLVMSIRRS 613
>gi|297733862|emb|CBI15109.3| unnamed protein product [Vitis vinifera]
Length = 602
Score = 323 bits (827), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 180/496 (36%), Positives = 286/496 (57%), Gaps = 25/496 (5%)
Query: 71 SGTFRAPNAGSIVRSFQPTVQPPYQPPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAI 130
+G F P + +S V + N P + R+ P+ +LNPYQG W I
Sbjct: 117 TGIFLKPKQEIVAKSAAQIVNEQHG------NMAPAARMAMTRRVHPLVSLNPYQGNWTI 170
Query: 131 KARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLIS 190
K R+T KG +R Y NARG+G VF+ +L D DG +I+ T FN +FYE ++G+VY IS
Sbjct: 171 KVRLTNKGTMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFYEKFQLGKVYYIS 230
Query: 191 KGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAEN-NSI 249
KG+LK A K F ++N++E+ L S V+ + E+ IP+ +F F I E+ N +
Sbjct: 231 KGALKVANKQFKTVQNDYEMTLNENSEVEEASNEETFIPEAKFKFVEIEELGPYVNGKEL 290
Query: 250 VDVIGIVISVNPSVPILRKNGME-TQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMV 308
VDVIG+V SV+P++ I RK+ + +R + + D + ++V ++LW D GQ+L +
Sbjct: 291 VDVIGVVQSVSPTMSIRRKSNNDIVPKRDITIADKTKKTVVVSLWNDHATNVGQELLDNA 350
Query: 309 DVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSIS 368
D FP++++KS KV DF G S+ T+ + + +NPD E+ +LR W+DS GK A+ SI
Sbjct: 351 DK--FPIVAIKSLKVGDFQGVSLSTLSKSIVLVNPDTPESKKLRSWYDSEGKGASMASIG 408
Query: 369 REI---AAGGAKNEIHKTVSQ---IKNEGLGRSEKPDWVTVRAFITFIKSD-SFCYTACP 421
+I + GG K+ + VS N LG +KP + ++RA+I+FIK D + Y AC
Sbjct: 409 SDISPSSKGGVKSMYYDRVSLSHVTSNPSLGE-DKPSFFSIRAYISFIKPDQTMWYRAC- 466
Query: 422 LMIGDRQCNKKVTQS-GNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEE 480
+ CNKKVT + G+ + C+ C + DEC RY++ ++ D +G W++ F E E
Sbjct: 467 -----KTCNKKVTDAIGSGYWCEGCQKNDDECSLRYIMVVKVSDASGEAWLSLFNEQAER 521
Query: 481 ILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQ 540
+ GC A EL LK + ++ F + ++ ++ +LFR+ + + Y +E+R +IT
Sbjct: 522 MFGCSADELDKLKSQEGEENLFQQKLKEAIWVPHLFRISVAQHEYMNEKRQRITARAVVP 581
Query: 541 VNYSSESRYLLDLISK 556
V++++ESR LL+ ISK
Sbjct: 582 VDFAAESRLLLEEISK 597
>gi|432889884|ref|XP_004075379.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Oryzias latipes]
Length = 598
Score = 322 bits (825), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 180/462 (38%), Positives = 270/462 (58%), Gaps = 20/462 (4%)
Query: 99 NFRNHGPILKNEAP---ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSF 155
+F P+ P ++++PIA+LNPYQ +W I+ARVT K +R ++N+RGDGK+FS
Sbjct: 150 DFGKKAPLAMPSTPGGSSKVVPIASLNPYQSKWTIRARVTNKSGIRTWSNSRGDGKLFSM 209
Query: 156 DLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEAT 215
+L+D + GEIRVT FN VD+F+ +IEVG+VY ISKGSLK A K + +KN++E+ L
Sbjct: 210 ELVD-ESGEIRVTGFNQEVDKFFSLIEVGKVYYISKGSLKIANKQYTSVKNDYEMTLNGE 268
Query: 216 STVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQR 275
ST+ C E D +P Q F I ++ES + ++IVDVIG+ SV+ + K E +
Sbjct: 269 STILPCEESGD-VPMMQCDFVPIGDLESRDKDAIVDVIGVCKSVDEVTRLTTKTNREVSK 327
Query: 276 RILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIP 335
R L+L D SG+ V +TLWG+ E +K D P++++K K++DF G+S+
Sbjct: 328 RSLSLMDMSGKLVTVTLWGE----EAEKF----DGSGQPIVAIKGAKLSDFGGRSLSASF 379
Query: 336 STQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRS 395
S+ L INPD EA++LR W+D G S++ G + KT+S +KNE LG
Sbjct: 380 SSTLMINPDIPEAYKLRGWYDKDGHAVEGQSLTELKGGSGGGSTNWKTLSDLKNEHLGHG 439
Query: 396 EKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDY 454
EK D+ + A + +++ ++ Y ACP ++ CNKKV Q ++C++C++E Y
Sbjct: 440 EKADYYSCIATVVYLRKENCLYQACP----NQDCNKKVIDQHNGMFRCEKCDKEFPNFKY 495
Query: 455 RYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQY 514
R +L A I D WVT FQES E ILG A L LK ++ F E+ + F +
Sbjct: 496 RLILSANIADYGDNQWVTCFQESAEAILGQNAAYLGQLKD--SNESAFDEVFQQANFKTF 553
Query: 515 LFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
+FR ++K E Y DE R+K TV+ V++ + L+ I K
Sbjct: 554 VFRNRVKLETYNDESRIKATVMDLKPVDHKDYIKSLIVNIRK 595
>gi|213512619|ref|NP_001135257.1| Replication protein A 70 kDa DNA-binding subunit [Salmo salar]
gi|209155456|gb|ACI33960.1| Replication protein A 70 kDa DNA-binding subunit [Salmo salar]
Length = 607
Score = 322 bits (824), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 178/445 (40%), Positives = 268/445 (60%), Gaps = 17/445 (3%)
Query: 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
A+++PIA+LNPYQ +W I+ARVT K +R ++N+RGDGK+FS +++D + GEIRVT F
Sbjct: 174 AKVVPIASLNPYQSKWTIRARVTNKSGIRTWSNSRGDGKLFSMEIVD-ESGEIRVTAFTQ 232
Query: 173 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQ 232
VD+FY IIE G+V+ ISKGSLK A K ++ LKN++E+ L ST+ C + D +P Q
Sbjct: 233 EVDKFYSIIETGKVFYISKGSLKIANKQYSSLKNDYEMTLNGESTIIPCEDTQD-VPMVQ 291
Query: 233 FSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTL 292
+F I+++++ E ++I+DVIG+ SV+ + KN E +R LNL D SG+ VE+TL
Sbjct: 292 CNFVSIADLQAREKDTILDVIGVCKSVSDVTRLNTKNNREVSKRTLNLMDQSGKLVEVTL 351
Query: 293 WGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELR 352
WG+ E D P+L++K K++D+ G+S+ S+ + +NPD EA++LR
Sbjct: 352 WGEEA--------ENFDGSGQPILAIKGAKLSDYGGRSLSASFSSTVMVNPDIPEAYKLR 403
Query: 353 EWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKS 412
W+D G + S++ GG N KT++ IK E LG +K D+ + A I +I+
Sbjct: 404 GWYDKEGHSMDGQSLTEARTGGGGGNTNWKTLADIKTEHLGHGDKADYFSCIATIVYIRK 463
Query: 413 DSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWV 471
++ Y ACP + CNKKV Q ++C++C++E YR +L A I D WV
Sbjct: 464 ENCLYQACP----SQDCNKKVVDQQNGMFRCEKCDKEFPNFKYRLILSANIADYGDNQWV 519
Query: 472 TAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRV 531
T FQES E ILG A L LK ++ F EI + F+ ++FR ++K E Y DE R+
Sbjct: 520 TCFQESAEAILGQNAAYLGQLKDS--NEAAFEEIFQQANFHTFVFRNRVKLETYNDESRI 577
Query: 532 KITVIRADQVNYSSESRYLLDLISK 556
K TV+ V++ S+ L+ I K
Sbjct: 578 KATVMEVKPVDHKEYSKRLIMNIRK 602
>gi|380815388|gb|AFE79568.1| replication protein A 70 kDa DNA-binding subunit [Macaca mulatta]
gi|383420567|gb|AFH33497.1| replication protein A 70 kDa DNA-binding subunit [Macaca mulatta]
gi|384943584|gb|AFI35397.1| replication protein A 70 kDa DNA-binding subunit [Macaca mulatta]
Length = 616
Score = 321 bits (823), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 184/476 (38%), Positives = 278/476 (58%), Gaps = 23/476 (4%)
Query: 89 TVQPPYQPPPNF-RNHGPILKNEA---PARIIPIAALNPYQGRWAIKARVTAKGDLRRYN 144
TV Y F + GP L N + ++++PIA+L PYQ +W I ARVT K +R ++
Sbjct: 154 TVSKAYGASKTFGKAGGPSLSNTSGGTQSKVVPIASLTPYQSKWTICARVTNKSQIRTWS 213
Query: 145 NARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHL 204
N+RG+GK+FS +L+D + GEIR T FN VD+F+ +IEV +VY SKG+LK A K F +
Sbjct: 214 NSRGEGKLFSLELVD-ESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAV 272
Query: 205 KNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVP 264
KN++E+ ++V C E+D +P QF F I ++ES +S+VD+IGI S +
Sbjct: 273 KNDYEMTFNNETSVMPC-EDDRHLPTVQFDFTGIDDLESKSKDSLVDIIGICKSYEDATK 331
Query: 265 I-LRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKV 323
I +R N E +R + L DTSG+ V TLWG+ +K Q PVL++K +V
Sbjct: 332 ITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQ--------PVLAIKGARV 383
Query: 324 NDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAG-GAKNEIHK 382
+DF G+S+ + S+ + +NPD EA++LR WFD+ G+ VSIS + G G N K
Sbjct: 384 SDFGGRSLSVLSSSTIIVNPDIPEAYKLRGWFDAEGQALDGVSISDLKSGGVGGGNTNWK 443
Query: 383 TVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQ 441
T+ ++K+E LG+ +KPD+ + A + +++ ++ Y ACP + CNKKV Q ++
Sbjct: 444 TLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPT----QDCNKKVIDQQNGLYR 499
Query: 442 CDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVR 501
C++C+ E YR +L I D WVT FQES E ILG A L LK +++
Sbjct: 500 CEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKD--KNEQA 557
Query: 502 FGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKS 557
F E+ ++ F ++FR+++K E Y DE R+K TV+ V+Y R L+ I +S
Sbjct: 558 FEEVFQNANFRSFIFRVRVKVETYNDESRIKATVMDVKPVDYREYGRRLVLSIRRS 613
>gi|403275301|ref|XP_003929392.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit
[Saimiri boliviensis boliviensis]
Length = 560
Score = 321 bits (822), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 183/476 (38%), Positives = 279/476 (58%), Gaps = 23/476 (4%)
Query: 89 TVQPPYQPPPNF-RNHGPILKNEA---PARIIPIAALNPYQGRWAIKARVTAKGDLRRYN 144
TV Y F + GP L + + A+++PIA+L PYQ +W I ARVT K +R ++
Sbjct: 98 TVPKAYGASKTFGKAGGPSLSSTSGGTQAKVVPIASLTPYQSKWTICARVTNKSQIRTWS 157
Query: 145 NARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHL 204
N+RG+GK+FS +L+D + GEIR T FN VD+F+ +IEV +VY SKG+LK A K F +
Sbjct: 158 NSRGEGKLFSLELVD-ESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAV 216
Query: 205 KNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVP 264
KN++E+ ++V C E+D +P QF F I ++E+ +S+VD+IGI S ++
Sbjct: 217 KNDYEMTFNNETSVMPC-EDDHHLPTVQFDFTGIDDLENKSKDSLVDIIGICKSYEDAIK 275
Query: 265 I-LRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKV 323
I +R N E +R + L DTSG+ V TLWG+ +K Q PVL++K +V
Sbjct: 276 ITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQ--------PVLAIKGARV 327
Query: 324 NDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAG-GAKNEIHK 382
+DF G+S+ + S+ + +NPD EA++LR WFDS G+ VSIS + G G N K
Sbjct: 328 SDFGGRSLSVLSSSTIILNPDIPEAYKLRGWFDSEGQALDGVSISDLKSGGLGGSNTNWK 387
Query: 383 TVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQ 441
T+ ++K+E LG+ +KPD+ + A + +++ ++ Y ACP + CNKKV Q ++
Sbjct: 388 TLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPT----QDCNKKVIDQQNGLYR 443
Query: 442 CDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVR 501
C++C+ E YR +L I D WVT FQES E ILG A L LK +++
Sbjct: 444 CEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKD--KNEQA 501
Query: 502 FGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKS 557
F E+ ++ F ++FR+++K E Y DE R+K TV+ V+Y R L+ I ++
Sbjct: 502 FEEVFQNANFRSFIFRVRVKVETYNDESRIKATVMDVKPVDYREYGRRLVQSIRRN 557
>gi|355767985|gb|EHH62675.1| Replication protein A 70 kDa DNA-binding subunit, partial [Macaca
fascicularis]
Length = 499
Score = 320 bits (821), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 184/476 (38%), Positives = 277/476 (58%), Gaps = 23/476 (4%)
Query: 89 TVQPPYQPPPNF-RNHGPILKNEA---PARIIPIAALNPYQGRWAIKARVTAKGDLRRYN 144
TV Y F + GP L N + ++++PIA+L PYQ +W I ARVT K +R ++
Sbjct: 37 TVSKAYGASKTFGKAGGPSLSNTSGGTQSKVVPIASLTPYQSKWTICARVTNKSQIRTWS 96
Query: 145 NARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHL 204
N+RG+GK+FS +L+D + GEIR T FN VD+F+ +IEV +VY SKG+LK A K F +
Sbjct: 97 NSRGEGKLFSLELVD-ESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAV 155
Query: 205 KNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVP 264
KN++E+ ++V C E+D +P QF F I ++ES +S+VD+IGI S +
Sbjct: 156 KNDYEMTFNNETSVMPC-EDDRHLPTVQFDFTGIDDLESKSKDSLVDIIGICKSYEDATK 214
Query: 265 I-LRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKV 323
I +R N E +R + L DTSG+ V TLWG+ +K Q PVL++K +V
Sbjct: 215 ITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQ--------PVLAIKGARV 266
Query: 324 NDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAG-GAKNEIHK 382
+DF G+S+ + S+ + NPD EA++LR WFD+ G+ VSIS + G G N K
Sbjct: 267 SDFGGRSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQALDGVSISDLKSGGVGGGNTNWK 326
Query: 383 TVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQ 441
T+ ++K+E LG+ +KPD+ + A + +++ ++ Y ACP + CNKKV Q ++
Sbjct: 327 TLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPT----QDCNKKVIDQQNGLYR 382
Query: 442 CDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVR 501
C++C+ E YR +L I D WVT FQES E ILG A L LK +++
Sbjct: 383 CEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELK--DKNEQA 440
Query: 502 FGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKS 557
F E+ ++ F ++FR+++K E Y DE R+K TV+ V+Y R L+ I +S
Sbjct: 441 FEEVFQNANFRSFIFRVRVKVETYNDESRIKATVMDVKSVDYREYGRRLVLSIRRS 496
>gi|255547187|ref|XP_002514651.1| replication factor A 1, rfa1, putative [Ricinus communis]
gi|223546255|gb|EEF47757.1| replication factor A 1, rfa1, putative [Ricinus communis]
Length = 622
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 175/466 (37%), Positives = 282/466 (60%), Gaps = 20/466 (4%)
Query: 101 RNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDS 160
+N P + R+ P+ +LNPYQG W IK RVT+KG++R Y NARG+G VF+ +L D
Sbjct: 162 KNMAPTARMAMTRRVHPLVSLNPYQGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDE 221
Query: 161 DGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDL 220
DG +I+ T FN +FY+ ++G+VY ISKGSLK A K F ++N++E+ L S V+
Sbjct: 222 DGTQIQATMFNEAARKFYDKFQLGKVYYISKGSLKVANKQFRTVQNDYEMNLNENSQVEE 281
Query: 221 CTEEDDSIPKQQFSFRHISEI-ESAENNSIVDVIGIVISVNPSVPILRKNGME-TQRRIL 278
++E IP+ +F+F I ++ N +VDVIG+V SV+P++ I RK+ + +R +
Sbjct: 282 ASDEAAFIPETKFNFVPIDQLGPYVSTNELVDVIGVVQSVSPTMSIRRKSNNDIVPKRDI 341
Query: 279 NLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQ 338
+ D + ++V ++LW D GQ+L +M D PV+++K+ KV DF G S+ T+ +
Sbjct: 342 TIADETKKTVVVSLWNDLATDVGQELLDMADKS--PVVAIKALKVGDFQGVSLSTLGRSI 399
Query: 339 LFINPDFAEAHELREWFDSGGKNAATVSISREI-----AAGGAKNEIHKTVSQI-KNEGL 392
+ +NPD E+ +L+ WFDS GK + S+ + + GG+ ++S I N L
Sbjct: 400 IQVNPDTPESKKLKSWFDSEGKETSLASVGAGLSPSTKSGGGSMYSDRVSISHITSNPSL 459
Query: 393 GRSEKPDWVTVRAFITFIKSD-SFCYTACPLMIGDRQCNKKVTQS-GNRWQCDRCNQEID 450
G S+KP + ++RA+I+FIK D S Y AC + CNKKVT++ G + C+ C +
Sbjct: 460 G-SDKPAFFSIRAYISFIKPDQSMWYRAC------KTCNKKVTEAIGGGYWCEGCQKNDA 512
Query: 451 ECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRV 510
EC RY++ ++ D +G WV+AF GE I+GC A EL LK + +D + ++
Sbjct: 513 ECSLRYIMVVKVSDASGEGWVSAFNNEGERIIGCSADELDKLKSQ-EDGNSYELKLKEAT 571
Query: 511 FNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
++ +LFR+ + + Y +E+R +ITV +++++ESR+LL+ ISK
Sbjct: 572 WSPHLFRVSVAQNEYNNEKRQRITVRAVAPLDFAAESRFLLEEISK 617
>gi|387539408|gb|AFJ70331.1| replication protein A 70 kDa DNA-binding subunit [Macaca mulatta]
Length = 616
Score = 320 bits (819), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 184/476 (38%), Positives = 277/476 (58%), Gaps = 23/476 (4%)
Query: 89 TVQPPYQPPPNF-RNHGPILKNEA---PARIIPIAALNPYQGRWAIKARVTAKGDLRRYN 144
TV Y F + GP L N + ++++PIA+L PYQ +W I ARVT K +R ++
Sbjct: 154 TVSKAYGASKTFGKAGGPSLSNTSGGTQSKVVPIASLTPYQSKWTICARVTNKSQIRTWS 213
Query: 145 NARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHL 204
N+RG+GK+FS +L+D + GEIR T FN VD+F+ +IEV +VY SKG+LK A K F +
Sbjct: 214 NSRGEGKLFSLELVD-ESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAV 272
Query: 205 KNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVP 264
KN++E+ ++V C E+D +P QF F I ++ES +S+VD+IGI S +
Sbjct: 273 KNDYEMTFNNETSVMPC-EDDRHLPTVQFDFTGIDDLESKSKDSLVDIIGICKSYEDATK 331
Query: 265 I-LRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKV 323
I +R N E +R + L DTSG+ V TLWG+ +K Q PVL++K +V
Sbjct: 332 ITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQ--------PVLAIKGARV 383
Query: 324 NDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAG-GAKNEIHK 382
+DF G+S+ + S+ + NPD EA++LR WFD+ G+ VSIS + G G N K
Sbjct: 384 SDFGGRSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQALDGVSISDLKSGGVGGGNTNWK 443
Query: 383 TVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQ 441
T+ ++K+E LG+ +KPD+ + A + +++ ++ Y ACP + CNKKV Q ++
Sbjct: 444 TLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPT----QDCNKKVIDQQNGLYR 499
Query: 442 CDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVR 501
C++C+ E YR +L I D WVT FQES E ILG A L LK +++
Sbjct: 500 CEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKD--KNEQA 557
Query: 502 FGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKS 557
F E+ ++ F ++FR+++K E Y DE R+K TV+ V+Y R L+ I +S
Sbjct: 558 FEEVFQNANFRSFIFRVRVKVETYNDESRIKATVMDVKPVDYREYGRRLVLSIRRS 613
>gi|402898208|ref|XP_003912118.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit [Papio
anubis]
Length = 616
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 184/476 (38%), Positives = 277/476 (58%), Gaps = 23/476 (4%)
Query: 89 TVQPPYQPPPNF-RNHGPILKNEA---PARIIPIAALNPYQGRWAIKARVTAKGDLRRYN 144
TV Y F + GP L N + ++++PIA+L PYQ +W I ARVT K +R ++
Sbjct: 154 TVSKAYGASKTFGKAGGPSLSNTSGGTQSKVVPIASLTPYQSKWTICARVTNKSQIRTWS 213
Query: 145 NARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHL 204
N+RG+GK+FS +L+D + GEIR T FN VD+F+ +IEV +VY SKG+LK A K F +
Sbjct: 214 NSRGEGKLFSLELVD-ESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAV 272
Query: 205 KNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVP 264
KN++E+ ++V C E+D +P QF F I ++ES +S+VD+IGI S +
Sbjct: 273 KNDYEMTFNNETSVMPC-EDDRHLPTVQFDFTGIDDLESKSKDSLVDIIGICKSYEDATK 331
Query: 265 I-LRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKV 323
I +R N E +R + L DTSG+ V TLWG+ +K Q PVL++K +V
Sbjct: 332 ITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQ--------PVLAIKGARV 383
Query: 324 NDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAG-GAKNEIHK 382
+DF G+S+ + S+ + NPD EA++LR WFD+ G+ VSIS + G G N K
Sbjct: 384 SDFGGRSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQALDGVSISDLKSGGVGGGNTNWK 443
Query: 383 TVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQ 441
T+ ++K+E LG+ +KPD+ + A + +++ ++ Y ACP + CNKKV Q ++
Sbjct: 444 TLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPT----QDCNKKVIDQQNGLYR 499
Query: 442 CDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVR 501
C++C+ E YR +L I D WVT FQES E ILG A L LK +++
Sbjct: 500 CEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKD--KNEQA 557
Query: 502 FGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKS 557
F E+ ++ F ++FR+++K E Y DE R+K TV+ V+Y R L+ I +S
Sbjct: 558 FEEVFQNANFRSFIFRVRVKVETYNDESRIKATVMDVKPVDYREYGRRLVLSIRRS 613
>gi|355568066|gb|EHH24347.1| Replication protein A 70 kDa DNA-binding subunit, partial [Macaca
mulatta]
Length = 605
Score = 319 bits (817), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 184/476 (38%), Positives = 277/476 (58%), Gaps = 23/476 (4%)
Query: 89 TVQPPYQPPPNF-RNHGPILKNEA---PARIIPIAALNPYQGRWAIKARVTAKGDLRRYN 144
TV Y F + GP L N + ++++PIA+L PYQ +W I ARVT K +R ++
Sbjct: 143 TVSKAYGASKTFGKAGGPSLSNTSGGTQSKVVPIASLTPYQSKWTICARVTNKSQIRTWS 202
Query: 145 NARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHL 204
N+RG+GK+FS +L+D + GEIR T FN VD+F+ +IEV +VY SKG+LK A K F +
Sbjct: 203 NSRGEGKLFSLELVD-ESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAV 261
Query: 205 KNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVP 264
KN++E+ ++V C E+D +P QF F I ++ES +S+VD+IGI S +
Sbjct: 262 KNDFEMTFNNETSVMPC-EDDRHLPTVQFDFTGIDDLESKSKDSLVDIIGICKSYEDATK 320
Query: 265 I-LRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKV 323
I +R N E +R + L DTSG+ V TLWG+ +K Q PVL++K +V
Sbjct: 321 ITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQ--------PVLAIKGARV 372
Query: 324 NDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAG-GAKNEIHK 382
+DF G+S+ + S+ + NPD EA++LR WFD+ G+ VSIS + G G N K
Sbjct: 373 SDFGGRSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQALDGVSISDLKSGGVGGGNTNWK 432
Query: 383 TVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQ 441
T+ ++K+E LG+ +KPD+ + A + +++ ++ Y ACP + CNKKV Q ++
Sbjct: 433 TLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPT----QDCNKKVIDQQNGLYR 488
Query: 442 CDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVR 501
C++C+ E YR +L I D WVT FQES E ILG A L LK +++
Sbjct: 489 CEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKD--KNEQA 546
Query: 502 FGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKS 557
F E+ ++ F ++FR+++K E Y DE R+K TV+ V+Y R L+ I +S
Sbjct: 547 FEEVFQNANFRSFIFRVRVKVETYNDESRIKATVMDVKPVDYREYGRRLVLSIRRS 602
>gi|397491957|ref|XP_003816902.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit [Pan
paniscus]
Length = 616
Score = 318 bits (815), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 183/476 (38%), Positives = 277/476 (58%), Gaps = 23/476 (4%)
Query: 89 TVQPPYQPPPNF-RNHGPILKNEA---PARIIPIAALNPYQGRWAIKARVTAKGDLRRYN 144
TV Y F + GP L + + ++++PIA+L PYQ +W I ARVT K +R ++
Sbjct: 154 TVSKAYGASKTFGKATGPSLSHTSGGTQSKVVPIASLTPYQSKWTICARVTNKSQIRTWS 213
Query: 145 NARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHL 204
N+RG+GK+FS +L+D + GEIR T FN VD+F+ +IEV +VY SKG+LK A K F +
Sbjct: 214 NSRGEGKLFSLELVD-ESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAV 272
Query: 205 KNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVP 264
KN++E+ ++V C E+D +P QF F I ++E+ +S+VD+IGI S +
Sbjct: 273 KNDYEMTFNNETSVMPC-EDDRHLPTVQFDFTGIDDLENKSKDSLVDIIGICKSYEDATK 331
Query: 265 I-LRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKV 323
I +R N E +R + L DTSG+ V TLWG+ +K Q PVL++K +V
Sbjct: 332 ITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQ--------PVLAIKGARV 383
Query: 324 NDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAG-GAKNEIHK 382
+DF G+S+ + S+ + NPD EA++LR WFDS G+ VSIS + G G N K
Sbjct: 384 SDFGGRSLSVLSSSTIIANPDIPEAYKLRGWFDSEGQALDGVSISDLKSGGVGGSNTNWK 443
Query: 383 TVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQ 441
T+ ++K+E LG+ +KPD+ + A + +++ ++ Y ACP + CNKKV Q ++
Sbjct: 444 TLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPT----QDCNKKVIDQQNGLYR 499
Query: 442 CDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVR 501
C++C+ E YR +L I D WVT FQES E ILG A L LK +++
Sbjct: 500 CEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGHNAAYLGELKD--KNEQA 557
Query: 502 FGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKS 557
F E+ ++ F ++FR+++K E Y DE R+K TV+ V+Y R L+ I +S
Sbjct: 558 FEEVFQNANFRSFIFRVRVKVETYNDESRIKATVMDVKPVDYREYGRRLVMSIRRS 613
>gi|4506583|ref|NP_002936.1| replication protein A 70 kDa DNA-binding subunit [Homo sapiens]
gi|1350579|sp|P27694.2|RFA1_HUMAN RecName: Full=Replication protein A 70 kDa DNA-binding subunit;
Short=RP-A p70; AltName: Full=Replication factor A
protein 1; Short=RF-A protein 1; AltName:
Full=Single-stranded DNA-binding protein
gi|337489|gb|AAA36584.1| replication protein A, 70-kDa subunit [Homo sapiens]
gi|17390283|gb|AAH18126.1| Replication protein A1, 70kDa [Homo sapiens]
gi|46430939|gb|AAS94324.1| replication protein A1, 70kDa [Homo sapiens]
gi|119610980|gb|EAW90574.1| replication protein A1, 70kDa [Homo sapiens]
gi|158260431|dbj|BAF82393.1| unnamed protein product [Homo sapiens]
gi|313883656|gb|ADR83314.1| replication protein A1, 70kDa [synthetic construct]
Length = 616
Score = 318 bits (815), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 182/476 (38%), Positives = 277/476 (58%), Gaps = 23/476 (4%)
Query: 89 TVQPPYQPPPNF-RNHGPILKNEA---PARIIPIAALNPYQGRWAIKARVTAKGDLRRYN 144
TV Y F + GP L + + ++++PIA+L PYQ +W I ARVT K +R ++
Sbjct: 154 TVSKAYGASKTFGKAAGPSLSHTSGGTQSKVVPIASLTPYQSKWTICARVTNKSQIRTWS 213
Query: 145 NARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHL 204
N+RG+GK+FS +L+D + GEIR T FN VD+F+ +IEV +VY SKG+LK A K F +
Sbjct: 214 NSRGEGKLFSLELVD-ESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAV 272
Query: 205 KNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVP 264
KN++E+ ++V C E+D +P QF F I ++E+ +S+VD+IGI S +
Sbjct: 273 KNDYEMTFNNETSVMPC-EDDHHLPTVQFDFTGIDDLENKSKDSLVDIIGICKSYEDATK 331
Query: 265 I-LRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKV 323
I +R N E +R + L DTSG+ V TLWG+ +K Q PVL++K +V
Sbjct: 332 ITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQ--------PVLAIKGARV 383
Query: 324 NDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAG-GAKNEIHK 382
+DF G+S+ + S+ + NPD EA++LR WFD+ G+ VSIS + G G N K
Sbjct: 384 SDFGGRSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQALDGVSISDLKSGGVGGSNTNWK 443
Query: 383 TVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQ 441
T+ ++K+E LG+ +KPD+ + A + +++ ++ Y ACP + CNKKV Q ++
Sbjct: 444 TLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPT----QDCNKKVIDQQNGLYR 499
Query: 442 CDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVR 501
C++C+ E YR +L I D WVT FQES E ILG A L LK +++
Sbjct: 500 CEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKD--KNEQA 557
Query: 502 FGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKS 557
F E+ ++ F ++FR+++K E Y DE R+K TV+ V+Y R L+ I +S
Sbjct: 558 FEEVFQNANFRSFIFRVRVKVETYNDESRIKATVMDVKPVDYREYGRRLVMSIRRS 613
>gi|242041767|ref|XP_002468278.1| hypothetical protein SORBIDRAFT_01g042890 [Sorghum bicolor]
gi|241922132|gb|EER95276.1| hypothetical protein SORBIDRAFT_01g042890 [Sorghum bicolor]
Length = 623
Score = 318 bits (814), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 180/464 (38%), Positives = 276/464 (59%), Gaps = 19/464 (4%)
Query: 102 NHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSD 161
N P + R+ P+ LNPYQG W IK RVT+KG+LR Y NARG+G VF+ +L D D
Sbjct: 166 NAAPAARLSMTRRVHPLITLNPYQGNWVIKVRVTSKGNLRTYRNARGEGCVFNVELTDED 225
Query: 162 GGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLC 221
G +I+ T FN +FY I E+G+VY +SKGSL+ A K F ++N++E+ L + V+
Sbjct: 226 GTQIQATMFNEAAKKFYPIFELGKVYYVSKGSLRIANKQFKTVQNDYEMSLNENAIVEEA 285
Query: 222 TEEDDSIPKQQFSFRHISEIES-AENNSIVDVIGIVISVNPSVPILRKNGMET-QRRILN 279
E + IP+ Q++F I + + +VD+IG+V SV+P++ + RK ET +R +
Sbjct: 286 -EGETFIPQVQYNFVKIDHLGTYVGGRELVDIIGVVQSVSPTLSVRRKIDNETIPKRDIV 344
Query: 280 LKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQL 339
+ D SG++V ++LW D GQ+L +MVD PV+++KS KV+DF G S+ TI + L
Sbjct: 345 VADDSGKTVSISLWNDLATTTGQELLDMVDSS--PVVAIKSLKVSDFQGVSLSTIGRSTL 402
Query: 340 FINPDFAEAHELREWFDSGGKNAATVSISREIA---AGGAKNEIHKTV--SQIKNEGLGR 394
INPD EA ++ W+DS GK+ + I E+ AGG K+ V S I ++
Sbjct: 403 AINPDLPEAQNVKSWYDSEGKDTSLAPIGAEMGAARAGGLKSMYSDRVFLSHITSDPAMG 462
Query: 395 SEKPDWVTVRAFITFIKSD-SFCYTACPLMIGDRQCNKKVTQS-GNRWQCDRCNQEIDEC 452
EKP + ++ A I+ IK D + Y AC + CNKKVT++ G+ + C+ C + EC
Sbjct: 463 QEKPVFFSLNAIISHIKPDQNMWYRAC------KTCNKKVTEAFGSGYWCEGCQKNDSEC 516
Query: 453 DYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFN 512
RY++ +I D TG WV+ F E E+I+GC A EL ++ E DD + ++ +
Sbjct: 517 SLRYIMVLKISDPTGEAWVSVFNEHAEKIIGCSADELDRIRKEEGDDSYILK-LKEATWV 575
Query: 513 QYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
+LFR+ + + Y +E+R +ITV V+Y++ES+YLL+ I+K
Sbjct: 576 PHLFRVSVTQHEYMNEKRQRITVRSEAPVDYAAESKYLLEEIAK 619
>gi|224130162|ref|XP_002328669.1| predicted protein [Populus trichocarpa]
gi|222838845|gb|EEE77196.1| predicted protein [Populus trichocarpa]
Length = 603
Score = 317 bits (813), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 173/465 (37%), Positives = 282/465 (60%), Gaps = 20/465 (4%)
Query: 102 NHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSD 161
N P + R+ P+ +LNPYQG W IK RVT+KG++R Y NARG+G VF+ +L D D
Sbjct: 144 NMAPAARMAMTRRVHPLVSLNPYQGNWTIKVRVTSKGNMRTYRNARGEGCVFNVELTDGD 203
Query: 162 GGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLC 221
G +I+ T FN +FY+ E+G+VY ISKG+L+ A K F ++N++E+ L S V+
Sbjct: 204 GTQIQATMFNEAAKKFYDRFELGKVYYISKGTLRVANKQFKTVQNDYEMTLNENSEVEEA 263
Query: 222 TEEDDSIPKQQFSFRHISEIESAENNS-IVDVIGIVISVNPSVPILRKNGMET-QRRILN 279
++E IP+ +F F I ++ N+ +VDVIGIV SV+P+ I RK+ ET +R +
Sbjct: 264 SDEAACIPETKFKFVPIDQLGPYVNSKDLVDVIGIVQSVSPTTSIRRKSNNETVPKRDIV 323
Query: 280 LKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQL 339
+ D + ++V ++LW + GQ+L ++ D PV+++KS KV DF G S+ T+ + +
Sbjct: 324 VADETKKTVVVSLWNELATSVGQELHDIADKS--PVVAIKSLKVGDFQGISLSTLGKSIV 381
Query: 340 FINPDFAEAHELREWFDSGGKNAATVSISREIA---AGGAKNEIHKTVSQ---IKNEGLG 393
+NP AE+ +LR W+DS GK + S+ ++ GA++ VS N LG
Sbjct: 382 QVNPVIAESEKLRNWYDSEGKETSMASVGSGLSPSTKSGARSMYSDRVSLSHITSNPSLG 441
Query: 394 RSEKPDWVTVRAFITFIKSD-SFCYTACPLMIGDRQCNKKVTQS-GNRWQCDRCNQEIDE 451
+KP + ++RA+I+FIK D + Y AC + CNKKVT + G + C+ C + E
Sbjct: 442 E-DKPAFFSIRAYISFIKPDQTMWYRAC------KTCNKKVTDALGGGYWCEGCQKNDAE 494
Query: 452 CDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVF 511
C RY++ ++ D +G WV+AF E E+I+GC A EL +LK +++++ + + ++ +
Sbjct: 495 CSLRYIMVVKVSDGSGEGWVSAFNEEAEKIIGCSADELDLLKSQIEENT-YQQRLKEATW 553
Query: 512 NQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
N +L R+ + + Y +E+R ++TV V++++ESR+LL+ ISK
Sbjct: 554 NPHLLRISVSQNEYNNEKRQRMTVRAVAPVDFAAESRFLLEEISK 598
>gi|426383460|ref|XP_004058298.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit
[Gorilla gorilla gorilla]
Length = 648
Score = 317 bits (813), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 182/476 (38%), Positives = 277/476 (58%), Gaps = 23/476 (4%)
Query: 89 TVQPPYQPPPNF-RNHGPILKNEA---PARIIPIAALNPYQGRWAIKARVTAKGDLRRYN 144
TV Y F + GP L + + ++++PIA+L PYQ +W I ARVT K +R ++
Sbjct: 186 TVSKVYGASKTFGKAAGPSLSHTSGGTQSKVVPIASLTPYQSKWTICARVTNKSQIRTWS 245
Query: 145 NARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHL 204
N+RG+GK+FS +L+D + GEIR T FN VD+F+ +IEV +VY SKG+LK A K F +
Sbjct: 246 NSRGEGKLFSLELVD-ESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAV 304
Query: 205 KNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVP 264
KN++E+ ++V C E+D +P QF F I ++E+ +S+VD+IGI S +
Sbjct: 305 KNDYEMTFNNETSVMPC-EDDHHLPTVQFDFTGIDDLENKSKDSLVDIIGICKSYEDATK 363
Query: 265 I-LRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKV 323
I +R N E +R + L DTSG+ V TLWG+ +K Q PVL++K +V
Sbjct: 364 ITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQ--------PVLAIKGARV 415
Query: 324 NDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAG-GAKNEIHK 382
+DF G+S+ + S+ + NPD EA++LR WFD+ G+ VSIS + G G N K
Sbjct: 416 SDFGGRSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQALDGVSISDLKSGGVGGSNTNWK 475
Query: 383 TVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQ 441
T+ ++K+E LG+ +KPD+ + A + +++ ++ Y ACP + CNKKV Q ++
Sbjct: 476 TLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPT----QDCNKKVIDQQNGLYR 531
Query: 442 CDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVR 501
C++C+ E YR +L I D WVT FQES E ILG A L LK +++
Sbjct: 532 CEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKD--KNEQA 589
Query: 502 FGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKS 557
F E+ ++ F ++FR+++K E Y DE R+K TV+ V+Y R L+ I +S
Sbjct: 590 FEEVFQNANFRSFIFRVRVKVETYNDESRIKATVMDVKPVDYREYGRRLVMSIRRS 645
>gi|332846842|ref|XP_511254.3| PREDICTED: replication protein A 70 kDa DNA-binding subunit [Pan
troglodytes]
gi|410218106|gb|JAA06272.1| replication protein A1, 70kDa [Pan troglodytes]
gi|410264556|gb|JAA20244.1| replication protein A1, 70kDa [Pan troglodytes]
gi|410300150|gb|JAA28675.1| replication protein A1, 70kDa [Pan troglodytes]
gi|410340247|gb|JAA39070.1| replication protein A1, 70kDa [Pan troglodytes]
Length = 616
Score = 317 bits (812), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 182/476 (38%), Positives = 277/476 (58%), Gaps = 23/476 (4%)
Query: 89 TVQPPYQPPPNF-RNHGPILKNEA---PARIIPIAALNPYQGRWAIKARVTAKGDLRRYN 144
TV Y F + GP L + + ++++PIA+L PYQ +W I ARVT K +R ++
Sbjct: 154 TVSKAYGASKTFGKAAGPSLSHTSGGTQSKVVPIASLTPYQSKWTICARVTNKSQIRTWS 213
Query: 145 NARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHL 204
N+RG+GK+FS +L+D + GEIR T FN VD+F+ +IEV +VY SKG+LK A K F +
Sbjct: 214 NSRGEGKLFSLELVD-ESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAV 272
Query: 205 KNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVP 264
KN++E+ ++V C E+D +P QF F I ++E+ +S+VD+IGI S +
Sbjct: 273 KNDYEMTFNNETSVMPC-EDDRHLPTVQFDFTGIDDLENKSKDSLVDIIGICKSYEDATK 331
Query: 265 I-LRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKV 323
I +R N E +R + L DTSG+ V TLWG+ +K Q PVL++K +V
Sbjct: 332 ITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQ--------PVLAIKGARV 383
Query: 324 NDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAG-GAKNEIHK 382
+DF G+S+ + S+ + NPD EA++LR WFD+ G+ VSIS + G G N K
Sbjct: 384 SDFGGRSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQALDGVSISDLKSGGVGGSNTNWK 443
Query: 383 TVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQ 441
T+ ++K+E LG+ +KPD+ + A + +++ ++ Y ACP + CNKKV Q ++
Sbjct: 444 TLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPT----QDCNKKVIDQQNGLYR 499
Query: 442 CDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVR 501
C++C+ E YR +L I D WVT FQES E ILG A L LK +++
Sbjct: 500 CEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKD--KNEQA 557
Query: 502 FGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKS 557
F E+ ++ F ++FR+++K E Y DE R+K TV+ V+Y R L+ I +S
Sbjct: 558 FEEVFQNANFRSFIFRVRVKVETYNDESRIKATVMDVKPVDYREYGRRLVMSIRRS 613
>gi|390462862|ref|XP_002747872.2| PREDICTED: replication protein A 70 kDa DNA-binding subunit
[Callithrix jacchus]
Length = 672
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 175/447 (39%), Positives = 265/447 (59%), Gaps = 19/447 (4%)
Query: 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
A+++PIA+L PYQ +W I ARVT K +R ++N+RG+GK+FS +L+D + EIR T FN
Sbjct: 238 AKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVD-ESAEIRATAFNE 296
Query: 173 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQ 232
VD+F+ +IEV +VY SKG+LK A K F +KN++E+ ++V C E+D +P Q
Sbjct: 297 QVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPC-EDDHHLPTVQ 355
Query: 233 FSFRHISEIESAENNSIVDVIGIVISVNPSVPI-LRKNGMETQRRILNLKDTSGRSVELT 291
F F I +ES +S+VD+IGI S + I +R N E +R + L DTSG+ V T
Sbjct: 356 FDFTGIDNLESKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTAT 415
Query: 292 LWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHEL 351
LWG+ +K D PVL++K +V+DF G+S+ + S+ + +NPD EA++L
Sbjct: 416 LWGEDADK--------FDGSRQPVLAIKGARVSDFGGRSLSVLSSSTIIVNPDIPEAYKL 467
Query: 352 REWFDSGGKNAATVSISREIAAG-GAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFI 410
R WFDS G+ VSIS + G G + KT+ ++K+E LG+ +KPD+ + A + ++
Sbjct: 468 RGWFDSEGQALDGVSISDLKSGGLGGSSTNWKTLYEVKSENLGQGDKPDYFSSVATVVYL 527
Query: 411 KSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLT 469
+ ++ Y ACP + CNKKV Q ++C++C+ E YR +L I D
Sbjct: 528 RKENCMYQACPT----QDCNKKVIDQQNGLYRCEKCDTEFPSFKYRMILSVNIADFQENQ 583
Query: 470 WVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQ 529
WVT FQES E ILG A L LK +++ F E+ ++ F ++FR+++K E Y DE
Sbjct: 584 WVTCFQESAEAILGQSAAYLGELKD--KNEQAFEEVFQNANFRSFIFRVRVKVETYNDES 641
Query: 530 RVKITVIRADQVNYSSESRYLLDLISK 556
R+K TV+ V+Y R L+ I +
Sbjct: 642 RIKATVMDVKPVDYREYGRRLVQSIRR 668
>gi|168277810|dbj|BAG10883.1| replication protein A 70 kDa DNA-binding subunit [synthetic
construct]
Length = 616
Score = 316 bits (810), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 181/476 (38%), Positives = 276/476 (57%), Gaps = 23/476 (4%)
Query: 89 TVQPPYQPPPNF-RNHGPILKNEA---PARIIPIAALNPYQGRWAIKARVTAKGDLRRYN 144
TV Y F + GP L + + ++++PIA+L PYQ +W I ARVT K +R ++
Sbjct: 154 TVSKAYGASKTFGKAAGPSLSHTSGGTQSKVVPIASLTPYQSKWTICARVTNKSQIRTWS 213
Query: 145 NARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHL 204
N+RG+GK+FS +L+D + GEIR T FN VD+F+ +IEV +VY SKG+LK A K F +
Sbjct: 214 NSRGEGKLFSLELVD-ESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAV 272
Query: 205 KNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVP 264
KN++E+ ++V C E+D +P QF F I ++E+ +S+VD+IGI S +
Sbjct: 273 KNDYEMTFNNETSVMPC-EDDHHLPTVQFDFTGIDDLENKSKDSLVDIIGICKSYEDATK 331
Query: 265 I-LRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKV 323
I +R N E +R + L D SG+ V TLWG+ +K Q PVL++K +V
Sbjct: 332 ITVRSNNREVAKRNIYLMDASGKVVTATLWGEDADKFDGSRQ--------PVLAIKGARV 383
Query: 324 NDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAG-GAKNEIHK 382
+DF G+S+ + S+ + NPD EA++LR WFD+ G+ VSIS + G G N K
Sbjct: 384 SDFGGRSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQALDGVSISDLKSGGVGGSNTNWK 443
Query: 383 TVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQ 441
T+ ++K+E LG+ +KPD+ + A + +++ ++ Y ACP + CNKKV Q ++
Sbjct: 444 TLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPT----QDCNKKVIDQQNGLYR 499
Query: 442 CDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVR 501
C++C+ E YR +L I D WVT FQES E ILG A L LK +++
Sbjct: 500 CEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKD--KNEQA 557
Query: 502 FGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKS 557
F E+ ++ F ++FR+++K E Y DE R+K TV+ V+Y R L+ I +S
Sbjct: 558 FEEVFQNANFRSFIFRVRVKVETYNDESRIKATVMDVKPVDYREYGRRLVMSIRRS 613
>gi|388856821|emb|CCF49608.1| probable Replication factor-A protein 1 [Ustilago hordei]
Length = 627
Score = 316 bits (810), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 171/450 (38%), Positives = 259/450 (57%), Gaps = 22/450 (4%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
I PI L+PYQ RW IKARVT+K D+R ++N RG+GK+FS +LLD D GEI+ T FN V
Sbjct: 186 IYPIEGLSPYQNRWTIKARVTSKSDIRHWSNQRGEGKLFSVNLLD-DSGEIKATGFNDTV 244
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
DRFY +++ VYLISK + A+K F++L+NE+EI E ++ ++ CT+ D +P+ ++
Sbjct: 245 DRFYSLLKENHVYLISKAKVNIAKKQFSNLQNEYEITFENSTEIEECTDATD-VPEVKYE 303
Query: 235 FRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGME-TQRRILNLKDTSGRSVELTLW 293
F I+E+ES E N DVIG++ S I+ K Q+R L L D G+SV LTLW
Sbjct: 304 FVRINELESVEPNQTCDVIGVLDSYGELSEIVSKASQRPVQKRELTLVDQGGKSVRLTLW 363
Query: 294 GDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELRE 353
G K + V PV++ K KV DF G+S+ S+ + INPD E+H LR
Sbjct: 364 G----KNAETFPNNAGVDEKPVIAFKGVKVGDFGGRSLSMFSSSTMLINPDITESHVLRG 419
Query: 354 WFDSGGKNAATVSISREIAAGGAKNEI--------HKTVSQIKNEGLGRSEKPDWVTVRA 405
W+D+ G A + S GGA +T++Q+K+E LG +EKPD+ +RA
Sbjct: 420 WYDNDGARAQFEAFSNAGVGGGALGAAGAGGNMAERRTIAQVKDENLGMTEKPDYFNIRA 479
Query: 406 FITFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQD 464
+ +IK ++ YTACP CNKKVT N W+C++C++ + +YRY+L + D
Sbjct: 480 TVVYIKQENLYYTACP----SDGCNKKVTLDHENNWRCEKCDRSYEAPEYRYILSTNVAD 535
Query: 465 QTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEEL 524
TG W++ F E +++G A EL+ L+ + + + + YLF + K +
Sbjct: 536 ATGQIWLSGFNEDATKLIGMSAGELHQLRENSESE--YSAALHRAANRMYLFNCRAKMDT 593
Query: 525 YGDEQRVKITVIRADQVNYSSESRYLLDLI 554
+ D+ RV+ T+ R+ V+++ L+D I
Sbjct: 594 FNDQTRVRYTISRSAPVDFAKAGAELVDAI 623
>gi|443893823|dbj|GAC71279.1| hypothetical protein PANT_2d00035 [Pseudozyma antarctica T-34]
Length = 606
Score = 316 bits (810), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 172/450 (38%), Positives = 261/450 (58%), Gaps = 22/450 (4%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
I PI L+PYQ RW IKARVT+K D+R ++N RG+GK+FS +LLD D GEI+ T FN V
Sbjct: 167 IYPIEGLSPYQNRWTIKARVTSKSDIRHWSNQRGEGKLFSVNLLD-DSGEIKATGFNDAV 225
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
DRFY +++ VYLISK + A+K F++L+NE+EI E ++ ++ CT+ D +P+ ++
Sbjct: 226 DRFYSMLQENHVYLISKARVNIAKKQFSNLQNEYEITFENSTEIEECTDATD-VPEVKYE 284
Query: 235 FRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGME-TQRRILNLKDTSGRSVELTLW 293
F I+E+ES E N DVIG++ S I+ K Q+R L L D RSV LTLW
Sbjct: 285 FVRINELESVEPNQTCDVIGVLDSYGELSEIVSKASQRPVQKRELTLVDQGQRSVRLTLW 344
Query: 294 GDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELRE 353
G K + V PV++ K KV DF G+S+ S+ + INPD E+H LR
Sbjct: 345 G----KNAENFPNHAGVDEKPVIAFKGVKVGDFGGRSLSMFSSSTMLINPDITESHVLRG 400
Query: 354 WFDSGGKNA------ATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFI 407
WFD+ G +A + G A +T++Q+K++ LG +EKPD+ VRA +
Sbjct: 401 WFDNDGAHAQFQPFTNGGGAGGAMGGGAANMAERRTIAQVKDQNLGMTEKPDYFNVRATV 460
Query: 408 TFIKSDSFCYTACPLMIGDRQCNKKVT--QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQ 465
+IK ++ YTACP CNKKVT GN W+C++C++ ++ +YRY+L + D
Sbjct: 461 VYIKQENLYYTACP----SDGCNKKVTPDHEGN-WRCEKCDRSYEQPEYRYILSTNVADA 515
Query: 466 TGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELY 525
TG W++ F + +++G A EL+ L+ E + + F ++ Y F + K + +
Sbjct: 516 TGQIWLSGFNDDATKLMGMSAGELHKLREESESE--FTAVLHRAANRMYTFNCRAKMDSF 573
Query: 526 GDEQRVKITVIRADQVNYSSESRYLLDLIS 555
D+ RV+ T+ RA V+++ L+D I+
Sbjct: 574 NDQARVRYTISRAAPVDFAKAGAELVDAIN 603
>gi|62089044|dbj|BAD92969.1| replication protein A1, 70kDa variant [Homo sapiens]
Length = 630
Score = 316 bits (810), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 181/476 (38%), Positives = 276/476 (57%), Gaps = 23/476 (4%)
Query: 89 TVQPPYQPPPNF-RNHGPILKNEA---PARIIPIAALNPYQGRWAIKARVTAKGDLRRYN 144
TV Y F + GP L + + ++++PIA+L PYQ +W I ARVT K +R ++
Sbjct: 168 TVSKAYGASKTFGKAAGPSLSHTSGGTQSKVVPIASLTPYQSKWTICARVTNKSQIRTWS 227
Query: 145 NARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHL 204
N+RG+GK+FS +L+D + GEIR T FN VD+F+ +IEV +VY SKG+LK A K F +
Sbjct: 228 NSRGEGKLFSLELVD-ESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAV 286
Query: 205 KNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVP 264
KN++E+ ++V C E+D +P QF F I ++E+ +S+VD+IGI S +
Sbjct: 287 KNDYEMTFNNETSVMPC-EDDHHLPTVQFDFTGIDDLENKSKDSLVDIIGICKSYEDATK 345
Query: 265 I-LRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKV 323
I +R N E +R + L D SG+ V TLWG+ +K Q PVL++K +V
Sbjct: 346 ITVRSNNREVAKRNIYLMDASGKVVTATLWGEDADKFDGSRQ--------PVLAIKGARV 397
Query: 324 NDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAG-GAKNEIHK 382
+DF G+S+ + S+ + NPD EA++LR WFD+ G+ VSIS + G G N K
Sbjct: 398 SDFGGRSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQALDGVSISDLKSGGVGGSNTNWK 457
Query: 383 TVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQ 441
T+ ++K+E LG+ +KPD+ + A + +++ ++ Y ACP + CNKKV Q ++
Sbjct: 458 TLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPT----QDCNKKVIDQQNGLYR 513
Query: 442 CDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVR 501
C++C+ E YR +L I D WVT FQES E ILG A L LK +++
Sbjct: 514 CEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKD--KNEQA 571
Query: 502 FGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKS 557
F E+ ++ F ++FR+++K E Y DE R+K TV+ V+Y R L+ I +S
Sbjct: 572 FEEVFQNANFRSFIFRVRVKVETYNDESRIKATVMDVKPVDYREYGRRLVMSIRRS 627
>gi|147778951|emb|CAN71402.1| hypothetical protein VITISV_006284 [Vitis vinifera]
Length = 634
Score = 315 bits (808), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 174/474 (36%), Positives = 275/474 (58%), Gaps = 28/474 (5%)
Query: 102 NHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSD 161
N P + R+ P+ +LNPYQG W IK R+T KG +R Y NARG+G VF+ +L D D
Sbjct: 165 NMAPAARMAMTRRVHPLVSLNPYQGNWTIKVRLTNKGTMRTYKNARGEGCVFNVELTDED 224
Query: 162 GGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLC 221
G +I+ T FN +FYE ++G+VY ISKG+LK A K F ++N++E+ L S V+
Sbjct: 225 GTQIQATMFNEAARKFYEKFQLGKVYYISKGALKVANKQFKTVQNDYEMTLNENSEVEEA 284
Query: 222 TEEDDSIPKQQFSFRHISEIESAENNS----------IVDVIGIVISVNPSVPILRKNGM 271
+ E+ IP+ +F F I E+ N I DVIG+V SV+P++ I RK+
Sbjct: 285 SNEETFIPEAKFKFVEIEELGPYVNGKELVGPLTSLLIPDVIGVVQSVSPTMSIRRKSNN 344
Query: 272 E-TQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKS 330
+ +R + + D + ++V ++LW D GQ+L + D FP++++KS KV DF G S
Sbjct: 345 DIVPKRDITIADKTKKTVVVSLWNDHATNVGQELLDNADK--FPIVAIKSLKVGDFQGVS 402
Query: 331 IGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREI---AAGGAKNEIHKTVSQ- 386
+ T+ + + +NPD E+ +LR W+DS GK A+ SI +I + GG + + VS
Sbjct: 403 LSTLSKSIVLVNPDTPESKKLRSWYDSEGKGASMASIGSDISPSSKGGVXSMYYDRVSLS 462
Query: 387 --IKNEGLGRSEKPDWVTVRAFITFIKSD-SFCYTACPLMIGDRQCNKKVTQS-GNRWQC 442
N LG +KP + ++RA+I+FIK D + Y AC + CNKKVT + G+ + C
Sbjct: 463 HVTSNPSLGE-DKPSFFSIRAYISFIKPDQTMWYRAC------KTCNKKVTDAIGSGYWC 515
Query: 443 DRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRF 502
+ C + DEC RY++ ++ D +G W++ F E E + GC A EL LK + ++ F
Sbjct: 516 EGCQKNDDECSLRYIMVVKVSDASGEAWLSLFNEQAERMFGCSADELDKLKSQEGEENLF 575
Query: 503 GEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
+ ++ ++ +LFR+ + + Y +E+R +IT V++++ESR LL+ ISK
Sbjct: 576 QQKLKEAIWVPHLFRISVAQHEYMNEKRQRITARAVVPVDFAAESRLLLEEISK 629
>gi|297806837|ref|XP_002871302.1| hypothetical protein ARALYDRAFT_325405 [Arabidopsis lyrata subsp.
lyrata]
gi|297317139|gb|EFH47561.1| hypothetical protein ARALYDRAFT_325405 [Arabidopsis lyrata subsp.
lyrata]
Length = 604
Score = 315 bits (808), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 178/465 (38%), Positives = 277/465 (59%), Gaps = 19/465 (4%)
Query: 102 NHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSD 161
N P + R+ P+ +LNPYQG W I+ RVT KG +R YNNARG+G VF+ +L D +
Sbjct: 144 NAAPAARMAMTRRVHPLVSLNPYQGSWTIRVRVTNKGVMRTYNNARGEGCVFNVELTDEE 203
Query: 162 GGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLC 221
G +I+ T FNA +FY+ E+G+VY IS+GSLK A K F ++N++E+ L S V+
Sbjct: 204 GTQIQATMFNAAARKFYDRFEMGKVYYISRGSLKLANKQFKTVQNDYEMTLNENSEVEEA 263
Query: 222 TEEDDSIPKQQFSFRHISEIESAENNS-IVDVIGIVISVNPSVPILRKNGMET-QRRILN 279
+ E+ P+ +F+F I E+ + N ++DVIG+V V+P++ I RKN E +R +
Sbjct: 264 SNEEMFTPEIKFNFVPIDELGTYVNQKDLIDVIGVVQCVSPTMSIRRKNDNEMIPKRDIT 323
Query: 280 LKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQL 339
L D S +V ++LW D GQ+L +M D PV+++KS KV DF G S+ TI + +
Sbjct: 324 LADESKNTVVVSLWNDLATGIGQELLDMAD--NHPVIAIKSLKVGDFQGVSLSTISRSNV 381
Query: 340 FINPDFAEAHELREWFDSGGKNAATVSISREI---AAGGAKNEIHKTV--SQI-KNEGLG 393
INPD EA +L+ W+D+ GK + +I + A G+++ V S I N LG
Sbjct: 382 VINPDSPEAKKLKSWYDAEGKETSMSAIGSGMSSSANNGSRSMYSDRVFLSHITSNPSLG 441
Query: 394 RSEKPDWVTVRAFITFIKSD-SFCYTACPLMIGDRQCNKKVTQSGNR-WQCDRCNQEIDE 451
EKP + ++RA+I+FIK D + Y AC + CNKKVT++ + + C+ C ++ E
Sbjct: 442 E-EKPVFFSIRAYISFIKPDQTMWYRAC------KTCNKKVTEAMDSGYWCEGCQKKDQE 494
Query: 452 CDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVF 511
C RY++ ++ D TG TW +AF + E+I+GC A EL LK E + F ++ +
Sbjct: 495 CSLRYIMAVKVSDSTGETWFSAFNDEAEKIIGCTADELNNLKSEEGEVNEFQTKLKETTW 554
Query: 512 NQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
+ +LFR+ + ++ Y E+R +ITV +++++E+R LL ISK
Sbjct: 555 SSHLFRISVSQQEYNSEKRQRITVRGVSPIDFAAETRLLLQDISK 599
>gi|343428808|emb|CBQ72353.1| probable replication factor-A protein 1 [Sporisorium reilianum
SRZ2]
Length = 633
Score = 315 bits (807), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 172/449 (38%), Positives = 255/449 (56%), Gaps = 21/449 (4%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
I PI L+PYQ RW IKARVT+K D+R ++NARGDGK+FS +LLD D GEI+ T FN V
Sbjct: 193 IYPIEGLSPYQNRWTIKARVTSKSDIRHWSNARGDGKLFSVNLLD-DSGEIKATGFNDAV 251
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
DRF+ +++ VYLISK + A+K F++L+NE+EI E ++ ++ CT+ D +P+ ++
Sbjct: 252 DRFHPLLQENHVYLISKARVNIAKKQFSNLQNEYEITFENSTEIEECTDATD-VPEVKYE 310
Query: 235 FRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGME-TQRRILNLKDTSGRSVELTLW 293
F I+E+ES E N DVIGI+ S I+ K Q+R L L D RSV LTLW
Sbjct: 311 FVRINELESVEPNQTCDVIGILDSYGELSEIVSKASQRPVQKRELTLVDQGNRSVRLTLW 370
Query: 294 GDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELRE 353
G K + V PV++ K KV DF G+S+ S+ + INPD E+H LR
Sbjct: 371 G----KNAETFPNNAGVDEKPVIAFKGVKVGDFGGRSLSMFSSSTMLINPDITESHVLRG 426
Query: 354 WFDSGGKNAATVSISREIAAGGAKNEI-------HKTVSQIKNEGLGRSEKPDWVTVRAF 406
WFD+ G +A + G +T+ Q+K+E LG SEKPD+ VRA
Sbjct: 427 WFDNDGAHAQFQPYTNAGVGGAGGAGGAGANLAERRTIVQVKDENLGMSEKPDYFNVRAT 486
Query: 407 ITFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQ 465
+ +IK ++ YTACP CNKKV+ N W+C++C++ + +YRY+L + D
Sbjct: 487 VVYIKQENLYYTACP----SDGCNKKVSLNHENNWRCEKCDRSYPQPEYRYILSTNVADA 542
Query: 466 TGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELY 525
TG W++ F E +++G A EL+ L+ + + + F ++ Y F + K + +
Sbjct: 543 TGQIWLSGFNEDATKLIGMSAGELHQLREDSESE--FNAVLHRAANRMYTFNCRAKMDTF 600
Query: 526 GDEQRVKITVIRADQVNYSSESRYLLDLI 554
D RV+ T+ RA V ++ L++ I
Sbjct: 601 NDTARVRYTISRAAPVEFAKAGAELVEAI 629
>gi|197098316|ref|NP_001126290.1| replication protein A 70 kDa DNA-binding subunit [Pongo abelii]
gi|75054872|sp|Q5R7Q4.1|RFA1_PONAB RecName: Full=Replication protein A 70 kDa DNA-binding subunit;
Short=RP-A p70; AltName: Full=Replication factor A
protein 1; Short=RF-A protein 1
gi|55730978|emb|CAH92206.1| hypothetical protein [Pongo abelii]
Length = 616
Score = 314 bits (805), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 181/476 (38%), Positives = 276/476 (57%), Gaps = 23/476 (4%)
Query: 89 TVQPPYQPPPNF-RNHGPILKNEA---PARIIPIAALNPYQGRWAIKARVTAKGDLRRYN 144
TV Y F + GP L + + ++++PIA+L PYQ +W I ARVT K +R ++
Sbjct: 154 TVSKAYGASKTFGKAAGPSLSHNSGGTQSKVVPIASLTPYQSKWTICARVTNKSQIRTWS 213
Query: 145 NARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHL 204
N+RG+ K+FS +L+D + GEIR T FN VD+F+ +IEV +VY SKG+LK A K F +
Sbjct: 214 NSRGEEKLFSLELVD-ESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAV 272
Query: 205 KNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVP 264
KN++E+ ++V C E+D +P QF F I ++E+ +S+VD+IGI S +
Sbjct: 273 KNDYEMTFNNETSVMPC-EDDHHLPTVQFDFTGIDDLENKSKDSLVDIIGICKSYEDATK 331
Query: 265 I-LRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKV 323
I +R N E +R + L DTSG+ V TLWG+ +K Q PVL++K +V
Sbjct: 332 ITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQ--------PVLAIKGARV 383
Query: 324 NDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAG-GAKNEIHK 382
+DF G+S+ + S+ + NPD EA++LR WFD+ G+ VSIS + G G N K
Sbjct: 384 SDFGGRSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQALDGVSISDLKSGGVGGGNTNWK 443
Query: 383 TVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQ 441
T+ ++K+E LG+ +KPD+ + A + +++ ++ Y ACP + CNKKV Q ++
Sbjct: 444 TLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPT----QDCNKKVIDQQNGLYR 499
Query: 442 CDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVR 501
C++C+ E YR +L I D WVT FQES E ILG A L LK +++
Sbjct: 500 CEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKD--KNEQA 557
Query: 502 FGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKS 557
F E+ ++ F ++FR+++K E Y DE R+K TV+ V+Y R L+ I +S
Sbjct: 558 FEEVFQNANFRSFIFRVRVKVETYNDESRIKATVMDVKPVDYREYGRRLVMSIRRS 613
>gi|195649695|gb|ACG44315.1| replication protein A 70 kDa DNA-binding subunit [Zea mays]
Length = 618
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 176/464 (37%), Positives = 273/464 (58%), Gaps = 19/464 (4%)
Query: 102 NHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSD 161
N P+ R+ P+ LNPYQG W IK RVT+KG+LR Y NARG+G VF+ +L D D
Sbjct: 161 NTAPVKPLSMTKRVHPLITLNPYQGNWVIKVRVTSKGNLRTYRNARGEGCVFNVELTDED 220
Query: 162 GGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLC 221
G +I+ T FN +FY I E+G VY +SKGSL+ A K F ++N++E+ L + V+
Sbjct: 221 GTQIQATMFNDAAKKFYPIFELGNVYYVSKGSLRIANKQFKTVQNDYEMSLNENAIVEE- 279
Query: 222 TEEDDSIPKQQFSFRHISEIES-AENNSIVDVIGIVISVNPSVPILRKNGMET-QRRILN 279
E + IP+ Q++ I ++ S +VD++G+V SV+P++ + RK ET +R +
Sbjct: 280 AEGETCIPQVQYNLVKIDQLGSYVGGRELVDIVGVVQSVSPTLSVRRKIDNETIPKRDIV 339
Query: 280 LKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQL 339
+ D SG++V ++LW D GQ+L +M D PV+++KS KV+DF G S+ T+ + L
Sbjct: 340 VADDSGKTVSISLWNDLATTTGQELLDMADSS--PVVAIKSLKVSDFQGVSLSTVGKSTL 397
Query: 340 FINPDFAEAHELREWFDSGGKNAATVSISREIA---AGGAKNEIHKTV--SQIKNEGLGR 394
INPD EA L+ W+DS GK+ + I E+ AGG K+ V S I ++
Sbjct: 398 AINPDLHEAQNLKSWYDSEGKDTSLAPIGAEMGAARAGGFKSTYSDRVFLSHITSDPAMG 457
Query: 395 SEKPDWVTVRAFITFIKSD-SFCYTACPLMIGDRQCNKKVTQS-GNRWQCDRCNQEIDEC 452
EKP + ++ A I+ IK D + Y AC + CNKKVT++ G+ + C+ C + EC
Sbjct: 458 QEKPVFFSLYATISHIKPDQNMWYRAC------KTCNKKVTETFGSGYWCEGCQKNDSEC 511
Query: 453 DYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFN 512
RY++ ++ D TG WV+ F E E+I+GC A EL ++ E DD + ++ +
Sbjct: 512 SLRYIMVVKVSDPTGEAWVSVFNEHAEKIIGCSADELDRIRKEEGDD-SYALKLKEATWV 570
Query: 513 QYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
+LFR+ + + Y +E+R +ITV V +++ES+YLL+ I+K
Sbjct: 571 PHLFRVSVTQHEYNNEKRQRITVRSEAPVEHAAESKYLLEQIAK 614
>gi|71022145|ref|XP_761303.1| hypothetical protein UM05156.1 [Ustilago maydis 521]
gi|46097797|gb|EAK83030.1| hypothetical protein UM05156.1 [Ustilago maydis 521]
Length = 623
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 173/450 (38%), Positives = 254/450 (56%), Gaps = 22/450 (4%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
I PI L+PYQ RW IKARVT+K D+R ++N RG+GK+FS +LLD D GEI+ T FN V
Sbjct: 182 IYPIEGLSPYQNRWTIKARVTSKSDIRHWSNQRGEGKLFSVNLLD-DSGEIKATGFNDAV 240
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
DRFY +++ VYLISK + A+K F++L+NE+EI E ++ ++ CT+ D +P+ ++
Sbjct: 241 DRFYPLLQENHVYLISKARVNIAKKQFSNLQNEYEITFENSTEIEECTDATD-VPEVKYE 299
Query: 235 FRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGME-TQRRILNLKDTSGRSVELTLW 293
F I+E+ES E N DVIGI+ S I+ K Q+R L L D RSV+LTLW
Sbjct: 300 FVRINELESVEANQTCDVIGILDSYGELSEIVSKASQRPVQKRELTLVDQGNRSVKLTLW 359
Query: 294 GDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELRE 353
G K + V PVL+ K KV DF G+S+ S+ + INPD E+H LR
Sbjct: 360 G----KTAETFPTNAGVDEKPVLAFKGVKVGDFGGRSLSMFSSSTMLINPDITESHVLRG 415
Query: 354 WFDSGGKNA--------ATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRA 405
W+D+ G +A + GA +T+ Q+K+E LG SEKPD+ VRA
Sbjct: 416 WYDNDGAHAQFQPYTNGGVGGGAMGGGGAGANMAERRTIVQVKDENLGMSEKPDYFNVRA 475
Query: 406 FITFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQD 464
+ +IK ++ YTAC CNKKV N W+C++C++ +YRY+L + D
Sbjct: 476 TVVYIKQENLYYTAC----ASEGCNKKVNLDHENNWRCEKCDRSYATPEYRYILSTNVAD 531
Query: 465 QTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEEL 524
TG W++ F E +++G A EL+ L+ E + + F + Y+F + K +
Sbjct: 532 ATGQMWLSGFNEDATQLIGMSAGELHKLREESESE--FSAALHRAANRMYMFNCRAKMDT 589
Query: 525 YGDEQRVKITVIRADQVNYSSESRYLLDLI 554
+ D RV+ T+ RA V+++ L+D I
Sbjct: 590 FNDTARVRYTISRAAPVDFAKAGMELVDAI 619
>gi|198416884|ref|XP_002127939.1| PREDICTED: similar to MGC107891 protein [Ciona intestinalis]
Length = 607
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 174/486 (35%), Positives = 282/486 (58%), Gaps = 28/486 (5%)
Query: 62 NPGSFSTPNSGTFRA-------PNAGSIVRSFQPTVQPPYQPPPNFRNHGPILKNEAPAR 114
NP +++ ++ RA PN + S + +P + + P R
Sbjct: 115 NPVNYAQASANDGRAVQNENLKPNQNRMPASAMQSPKPTGKMSFGGKGDAPTTPGGTQTR 174
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
++PI +L PYQ +WAI+ARVT KG +R + NARG+GK+FSF +LD D G+I+VTCF
Sbjct: 175 VMPIGSLTPYQNKWAIRARVTQKGAMREWKNARGEGKLFSFTVLD-DSGDIKVTCFKEEA 233
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDS--IPKQQ 232
D+F+ ++EVG+V+ I+ +LKPA +N +++E+ L + + L +E+DD+ +PK Q
Sbjct: 234 DKFFSMVEVGKVFCIANATLKPANPQYNSTTHDYEMTLRRDTVITL-SEDDDAKLVPKIQ 292
Query: 233 FSFRHISEIESAENNSIVDVIGIVISV-NPSVPILRKNGMETQRRILNLKDTSGRSVELT 291
++F+ ISE+ + N++VD IGI+ S + S ++R E + R +NL D S +++T
Sbjct: 293 YNFKKISELGN-HVNTLVDTIGILKSAEDLSSVMIRSQNREAKVRKINLVDESNAEIQVT 351
Query: 292 LWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHEL 351
LWG +E +K V+ +KS KV+DF G S+ TI ST + INPD EA L
Sbjct: 352 LWG----QEAEKFTSEESA----VVVLKSAKVSDFGGCSMSTIGSTTVTINPDIPEAFSL 403
Query: 352 REWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIK 411
++W+++GGK+ AT ++ GG KT++ IK E LG EKPD++TV+A + + K
Sbjct: 404 KQWYETGGKSQATQVLTTGSGGGGNMAANWKTLADIKTENLGTKEKPDYITVKATVLYCK 463
Query: 412 SDSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQTGLTW 470
++ Y ACP + QCNKKV N ++C++CN E YR +L + D+ TW
Sbjct: 464 KENILYQACP----NDQCNKKVVDLQNGSYRCEKCNSESPNFKYRVILNMHMADEFDSTW 519
Query: 471 VTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQR 530
VT FQ+ E +L A++L LK ++ + ++S F Y F+L++K + + DE+R
Sbjct: 520 VTCFQDQAEILLNMTAQQLGDLKD--TNEQEYEAALKSVDFKSYFFKLRVKSDKFNDEER 577
Query: 531 VKITVI 536
++T++
Sbjct: 578 TRVTIM 583
>gi|226503005|ref|NP_001147118.1| replication protein A1 [Zea mays]
gi|195607412|gb|ACG25536.1| replication protein A 70 kDa DNA-binding subunit [Zea mays]
Length = 618
Score = 312 bits (800), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 177/464 (38%), Positives = 274/464 (59%), Gaps = 19/464 (4%)
Query: 102 NHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSD 161
N P+ R+ P+ LNPYQG W IK RVT+KG+LR Y NARG+G VF+ +L D D
Sbjct: 161 NTAPVKPLSMTKRVHPLITLNPYQGNWVIKVRVTSKGNLRTYRNARGEGCVFNVELTDED 220
Query: 162 GGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLC 221
G +I+ T FN +FY I E+G+VY +SKGSL+ A K F ++N++E+ L + V+
Sbjct: 221 GTQIQATMFNDAAKKFYPIFELGKVYYVSKGSLRIANKQFKTVQNDYEMSLNENAIVEEA 280
Query: 222 TEEDDSIPKQQFSFRHISEIES-AENNSIVDVIGIVISVNPSVPILRKNGMET-QRRILN 279
E + IP+ Q++ I ++ S +VD+IG+V SV+P++ + RK ET +R +
Sbjct: 281 -EGETCIPQVQYNLVKIDQLGSYVGGRELVDIIGVVQSVSPTLSVRRKIDNETIPKRDIV 339
Query: 280 LKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQL 339
+ D SG++V ++LW D GQ+L +M D PV+++KS KV+DF G S+ T+ + L
Sbjct: 340 VADDSGKTVSISLWNDLTTTTGQELLDMADSS--PVVAIKSLKVSDFQGVSLSTVGKSTL 397
Query: 340 FINPDFAEAHELREWFDSGGKNAATVSISREIA---AGGAKNEIHKTV--SQIKNEGLGR 394
INPD EA L+ W+DS GK+ + I E+ AGG K+ V S I ++
Sbjct: 398 AINPDLHEAQNLKSWYDSEGKDTSLAPIGAEMGAARAGGFKSTYSDRVFLSHITSDPAMG 457
Query: 395 SEKPDWVTVRAFITFIKSD-SFCYTACPLMIGDRQCNKKVTQS-GNRWQCDRCNQEIDEC 452
EKP + ++ A I+ IK D + Y AC + CNKKVT++ G+ + C+ C + EC
Sbjct: 458 QEKPVFFSLYATISHIKPDQNMWYRAC------KTCNKKVTETFGSGYWCEGCQKNDSEC 511
Query: 453 DYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFN 512
RY++ ++ D TG WV+ F E E+I+GC A EL ++ E DD + ++ +
Sbjct: 512 SLRYIMVIKVSDPTGEAWVSVFNEHAEKIIGCSADELDRIRKEEGDD-SYVLKLKEATWV 570
Query: 513 QYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
+LFR+ + + Y +E+R +ITV V +++ES+YLL+ I+K
Sbjct: 571 PHLFRVSVTQHEYNNEKRQRITVRSEAPVEHAAESKYLLEQIAK 614
>gi|226531756|ref|NP_001141474.1| uncharacterized protein LOC100273584 [Zea mays]
gi|194704722|gb|ACF86445.1| unknown [Zea mays]
gi|195647462|gb|ACG43199.1| replication protein A 70 kDa DNA-binding subunit [Zea mays]
gi|413956552|gb|AFW89201.1| Replication protein A DNA-binding subunit [Zea mays]
Length = 623
Score = 312 bits (800), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 178/464 (38%), Positives = 274/464 (59%), Gaps = 19/464 (4%)
Query: 102 NHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSD 161
N P + R+ P+ LNPYQG W IK RVT+KG+LR Y NARG+G VF+ +L D D
Sbjct: 166 NAAPATRLSMTRRVHPLITLNPYQGNWVIKVRVTSKGNLRTYRNARGEGCVFNVELTDED 225
Query: 162 GGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLC 221
G +I+ T FN +FY I E+G+VY +SKGSL+ A K F +KN++E+ L + V+
Sbjct: 226 GTQIQATMFNEAAKKFYPIFELGKVYYVSKGSLRIANKQFKTVKNDYELSLNENAIVEEA 285
Query: 222 TEEDDSIPKQQFSFRHISEI-ESAENNSIVDVIGIVISVNPSVPILRKNGMET-QRRILN 279
E + +P Q++ I ++ +VD++G+V SV+P++ + RK ET +R +
Sbjct: 286 -EGETFLPPVQYNLVKIDQLGPYVGGRELVDIVGVVQSVSPTLSVRRKIDNETIPKRDIV 344
Query: 280 LKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQL 339
+ D SG++V ++LW D GQ+L +MVD PV+++KS KV+DF G S+ TI + L
Sbjct: 345 VADDSGKTVTISLWNDLATTTGQELLDMVDSS--PVVAIKSLKVSDFQGVSLSTIGRSTL 402
Query: 340 FINPDFAEAHELREWFDSGGKNAATVSISREIA---AGGAKNEIHKTV--SQIKNEGLGR 394
INPD EA L+ W+DS GK+ + IS E+ AGG K+ V S I ++
Sbjct: 403 EINPDLPEAKNLKSWYDSEGKDTSLAPISAEVGATRAGGFKSMYSDRVFLSHITSDPAMG 462
Query: 395 SEKPDWVTVRAFITFIKSD-SFCYTACPLMIGDRQCNKKVTQS-GNRWQCDRCNQEIDEC 452
EKP + ++ A I+ IK D + Y AC CNKKVT++ G+ + C+ C + EC
Sbjct: 463 QEKPVFFSLYAIISHIKPDQNMWYRAC------TTCNKKVTEAFGSGYWCEGCQKNYSEC 516
Query: 453 DYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFN 512
RY++ ++ D TG WV+ F E E+I+GC A EL ++ E DD + ++ +
Sbjct: 517 SLRYIMVIKLSDPTGEAWVSVFNEHAEKIIGCSADELDRIRKEEGDD-SYVLKLKEATWV 575
Query: 513 QYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
+LFR+ + + Y +E+R +ITV V++++ES+YLL+ I+K
Sbjct: 576 PHLFRVSVTQHEYMNEKRQRITVRGEAPVDFAAESKYLLEEIAK 619
>gi|51512372|gb|AAU05383.1| replication protein A 70 kDa subunit [Ustilago maydis]
Length = 623
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 173/450 (38%), Positives = 254/450 (56%), Gaps = 22/450 (4%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
I PI L+PYQ RW IKARVT+K D+R ++N RG+GK+FS +LLD D GEI+ T FN V
Sbjct: 182 IYPIEGLSPYQNRWTIKARVTSKFDIRHWSNQRGEGKLFSVNLLD-DSGEIKATGFNDAV 240
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
DRFY +++ VYLISK + A+K F++L+NE+EI E ++ ++ CT+ D +P+ ++
Sbjct: 241 DRFYPLLQENHVYLISKARVNIAKKQFSNLQNEYEITFENSTEIEECTDATD-VPEVKYE 299
Query: 235 FRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGME-TQRRILNLKDTSGRSVELTLW 293
F I+E+ES E N DVIGI+ S I+ K Q+R L L D RSV+LTLW
Sbjct: 300 FVRINELESVEANQTCDVIGILDSYGELSEIVSKASQRPVQKRELTLVDQGNRSVKLTLW 359
Query: 294 GDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELRE 353
G K + V PVL+ K KV DF G+S+ S+ + INPD E+H LR
Sbjct: 360 G----KTAETFPTNAGVDEKPVLAFKGVKVGDFGGRSLSMFSSSTMLINPDITESHVLRG 415
Query: 354 WFDSGGKNA--------ATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRA 405
W+D+ G +A + GA +T+ Q+K+E LG SEKPD+ VRA
Sbjct: 416 WYDNDGAHAQFQPYTNGGVGGGAMGGGGAGANMAERRTIVQVKDENLGMSEKPDYFNVRA 475
Query: 406 FITFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQD 464
+ +IK ++ YTAC CNKKV N W+C++C++ +YRY+L + D
Sbjct: 476 TVVYIKQENLYYTAC----ASEGCNKKVNLDHENNWRCEKCDRSYATPEYRYILSTNVAD 531
Query: 465 QTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEEL 524
TG W++ F E +++G A EL+ L+ E + + F + Y+F + K +
Sbjct: 532 ATGQMWLSGFNEDATQLIGMSAGELHKLREESESE--FSAALHRAANRMYMFNCRAKMDT 589
Query: 525 YGDEQRVKITVIRADQVNYSSESRYLLDLI 554
+ D RV+ T+ RA V+++ L+D I
Sbjct: 590 FNDTARVRYTISRAAPVDFAKAGMELVDAI 619
>gi|417411795|gb|JAA52323.1| Putative replication factor-a protein 1, partial [Desmodus
rotundus]
Length = 588
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 175/470 (37%), Positives = 276/470 (58%), Gaps = 23/470 (4%)
Query: 89 TVQPPYQPPPNF-RNHGPILKNEA---PARIIPIAALNPYQGRWAIKARVTAKGDLRRYN 144
+V PY F + G L N + A+++PIA+L PYQ +W I ARVT K +R ++
Sbjct: 126 SVAKPYGASKTFGKAGGTSLVNSSGGSQAKVVPIASLTPYQSKWTICARVTNKSQIRTWS 185
Query: 145 NARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHL 204
N+RG+GK+FS +L+D + GEIR T FN D+F+ +I+V +VY SKG+LK A K F +
Sbjct: 186 NSRGEGKLFSIELVD-ESGEIRATAFNEQADKFFPLIDVNKVYYFSKGTLKIANKQFTAV 244
Query: 205 KNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVP 264
KN++E+ ++V C E+ ++P QF F I ++ES +S+VDVIGI S +
Sbjct: 245 KNDYEMTFNNETSVMPC-EDGRNLPTVQFGFTKIDDLESKPKDSLVDVIGICKSYEDATK 303
Query: 265 I-LRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKV 323
I ++ N E +R + L DTSG+ V TLWG+ +K Q PV+++K +V
Sbjct: 304 ITVKANNREVSKRNIYLMDTSGKVVSATLWGEDADKFDGSRQ--------PVMAIKGARV 355
Query: 324 NDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIH-K 382
+DF G+S+ I S+ + +NPD EA++LR WFDS G+ VSIS + G A + + K
Sbjct: 356 SDFGGRSLSVISSSTVIVNPDIPEAYKLRGWFDSEGQALDGVSISDLKSGGTAGSATNWK 415
Query: 383 TVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQ 441
T+ ++K+E LG+ +K D+ + A + +++ ++ Y ACP + CNKKV Q ++
Sbjct: 416 TLYEVKSENLGQGDKADYFSCVATVVYLRKENSMYQACPT----QDCNKKVIDQQNGLYR 471
Query: 442 CDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVR 501
C++C++E YR +L I D WVT FQES E ILG Y+ + + +++
Sbjct: 472 CEKCDREFPNFKYRMILSVNIADYQDNQWVTCFQESAEAILG--QSTAYLGELKEKNEQA 529
Query: 502 FGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLL 551
F EI ++ F ++F++++K E Y DE R+K TV+ V+Y SR ++
Sbjct: 530 FEEIFQNANFRSFVFKIRVKLETYNDESRIKATVMDVKPVDYREYSRRMI 579
>gi|15241489|ref|NP_196419.1| RPA70-kDa subunit B [Arabidopsis thaliana]
gi|6562316|emb|CAB62614.1| replication factor A-like protein [Arabidopsis thaliana]
gi|332003852|gb|AED91235.1| RPA70-kDa subunit B [Arabidopsis thaliana]
Length = 604
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 174/465 (37%), Positives = 278/465 (59%), Gaps = 19/465 (4%)
Query: 102 NHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSD 161
N P + R+ P+ +LNPYQG W IK RVT KG +R Y NARG+G VF+ +L D +
Sbjct: 144 NAAPAARMAMTRRVHPLVSLNPYQGSWTIKVRVTNKGVMRTYKNARGEGCVFNVELTDEE 203
Query: 162 GGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLC 221
G +I+ T FNA +FY+ E+G+VY IS+GSLK A K F ++N++E+ L S V+
Sbjct: 204 GTQIQATMFNAAARKFYDRFEMGKVYYISRGSLKLANKQFKTVQNDYEMTLNENSEVEEA 263
Query: 222 TEEDDSIPKQQFSFRHISEIESAENNS-IVDVIGIVISVNPSVPILRKNGMET-QRRILN 279
+ E+ P+ +F+F I E+ + N ++DVIG+V SV+P++ I RKN E +R +
Sbjct: 264 SNEEMFTPETKFNFVPIDELGTYVNQKDLIDVIGVVQSVSPTMSIRRKNDNEMIPKRDIT 323
Query: 280 LKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQL 339
L D + ++V ++LW D GQ+L +M D PV+++KS KV F G S+ TI + +
Sbjct: 324 LADETKKTVVVSLWNDLATGIGQELLDMAD--NHPVIAIKSLKVGAFQGVSLSTISRSNV 381
Query: 340 FINPDFAEAHELREWFDSGGKNAATVSISREIAAG---GAKNEIHKTV--SQI-KNEGLG 393
INP+ EA +L+ W+D+ GK + +I +++ G+++ V S I N LG
Sbjct: 382 VINPNSPEATKLKSWYDAEGKETSMSAIGSGMSSSANNGSRSMYSDRVFLSHITSNPSLG 441
Query: 394 RSEKPDWVTVRAFITFIKSD-SFCYTACPLMIGDRQCNKKVTQSGNR-WQCDRCNQEIDE 451
EKP + + RA+I+FIK D + Y AC + CNKKVT++ + + C+ C ++ E
Sbjct: 442 E-EKPVFFSTRAYISFIKPDQTMWYRAC------KTCNKKVTEAMDSGYWCESCQKKDQE 494
Query: 452 CDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVF 511
C RY++ ++ D TG TW++AF + E+I+GC A +L LK E + F ++ +
Sbjct: 495 CSLRYIMAVKVSDSTGETWLSAFNDEAEKIIGCTADDLNDLKSEEGEVNEFQTKLKEATW 554
Query: 512 NQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
+ +LFR+ + ++ Y E+R +ITV +++++E+R LL ISK
Sbjct: 555 SSHLFRISVSQQEYNSEKRQRITVRGVSPIDFAAETRLLLQDISK 599
>gi|343887032|gb|AEM65192.1| replication protein A 70kDa DNA-binding subunit [Kryptolebias
marmoratus]
Length = 610
Score = 311 bits (797), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 170/441 (38%), Positives = 263/441 (59%), Gaps = 18/441 (4%)
Query: 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
++++PIA+LNPYQ +W ++ARVT K +R ++N+RGDG++FS +++D + GEIRVT FN
Sbjct: 177 SKVVPIASLNPYQSKWTVRARVTNKSSIRTWSNSRGDGRLFSMEIVD-ESGEIRVTAFNQ 235
Query: 173 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQ 232
VD+FY +IEVG+VY ++KGSLK A K + +KN++E+ L ST+ C E++ +P Q
Sbjct: 236 EVDKFYSLIEVGKVYYVTKGSLKIANKQYTSVKNDYEMTLNGESTIIPC-EDNCDVPMVQ 294
Query: 233 FSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTL 292
F I+++E E ++IVDVIG+ SV+ + K+ E +R LNL D SG+ V + L
Sbjct: 295 CDFIPIADLEKREKDAIVDVIGVCKSVDEVTRLTTKSNREVSKRTLNLMDMSGKMVSVIL 354
Query: 293 WGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELR 352
WG+ E +K D P++++K K++DF G+SI S+ L INPD EA+++R
Sbjct: 355 WGE----EAEKF----DGSEQPIVAIKGAKLSDFGGRSISASFSSTLMINPDIPEAYKIR 406
Query: 353 EWFDSGGKNAATVSIS-REIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIK 411
WFD+ G S++ R I KT+S++K E LG ++ D+ + A I +++
Sbjct: 407 GWFDNEGHTVVGQSLTERRGTGIIGGIHIWKTLSEVKAEHLGHGDEADYFSCTATIVYLR 466
Query: 412 SDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTW 470
++ Y ACP + CNKKV Q ++C++C++E YR +L A I D W
Sbjct: 467 KENCLYQACP----SQDCNKKVIGQQNGMFRCEKCDKEFPNFKYRLILSANIADYGDNQW 522
Query: 471 VTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQR 530
VT FQES E ILG A L LK+ ++ F E+ + FN +F ++K E Y DE R
Sbjct: 523 VTCFQESAEAILGQNAAYLGQLKH--SNESAFDEVFQKANFNTLIFHNRVKLETYNDESR 580
Query: 531 VKITVIRADQVNYSSESRYLL 551
+K V+ V++ R L+
Sbjct: 581 IKAPVLSVAPVDHIEYIRRLM 601
>gi|348567597|ref|XP_003469585.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Cavia porcellus]
Length = 603
Score = 311 bits (796), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 189/545 (34%), Positives = 299/545 (54%), Gaps = 53/545 (9%)
Query: 11 IGNPKIFSESELTAQKTIPSNNLPQPVRVNNYSAPNSGTFNLQN-SGTFNSQNPGSFSTP 69
IGNP ++E + Q +P PV S+P +G QN S S P ++
Sbjct: 99 IGNPLPYNEGQGQPQA------VPSPVTA---SSPLTGRPQQQNGSSGVGSSVPKAYGA- 148
Query: 70 NSGTFRAPNAGSIVRSFQPTVQPPYQPPPNFRNHGPILKNEAPARIIPIAALNPYQGRWA 129
S TF P ++ T ++++PI +L PYQ +W
Sbjct: 149 -SKTFGKPGGSGLLHPSGGT----------------------QSKVVPIVSLTPYQSKWT 185
Query: 130 IKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLI 189
I+ARVT K +R ++N+RG+GK+FS +L+D + GEIR FN VD+F+ +IEV +VY
Sbjct: 186 IRARVTNKSQIRTWSNSRGEGKLFSLELVD-ESGEIRAAAFNEQVDKFFPLIEVNKVYYF 244
Query: 190 SKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSI 249
SKGSLK A K F+ +KN++E+ + ++V C E+D +P QF F I ++E+ +S+
Sbjct: 245 SKGSLKIANKQFSAVKNDYEMTFNSETSVVPC-EDDHHLPTVQFDFTGIDDLENKSKDSL 303
Query: 250 VDVIGIVISVNPSVPI-LRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMV 308
VD+IGI S + I ++ N E +R + L DTSG+ V TLWG+ +K Q
Sbjct: 304 VDIIGICKSYEDATKITVKSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQ--- 360
Query: 309 DVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSIS 368
PV+++K +V+DF G+S+ + S+ + +NPD EA++LR WFD+ G+ VSIS
Sbjct: 361 -----PVIAIKGARVSDFGGRSLSVLSSSTIIMNPDIPEAYKLRGWFDTEGQTLDGVSIS 415
Query: 369 R-EIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDR 427
+ A G N KT+ ++K+E LG+ +K D+ + A + +++ ++ Y ACP +
Sbjct: 416 DLKGGALGTSNTNWKTLYEVKSENLGQGDKADYFSSVATVVYLRKENCMYQACPT----Q 471
Query: 428 QCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPA 486
+CNKKV Q ++C++C++E YR +L A I D WVT FQES E ILG
Sbjct: 472 ECNKKVIDQQNGLYRCEKCDREFPNFKYRMILSANIADFQENQWVTCFQESAEAILG--Q 529
Query: 487 KELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSE 546
Y+ + + +++ F E+ ++ F + F++++K E Y DE RVK TV+ V+Y
Sbjct: 530 NTAYLGELKDKNEQAFEEVFQNANFRSFTFKIRVKLETYNDESRVKATVMDVKPVDYRDY 589
Query: 547 SRYLL 551
R L+
Sbjct: 590 GRRLI 594
>gi|428698228|pdb|4GOP|C Chain C, Structure And Conformational Change Of A Replication
Protein A Heterotrimer Bound To Ssdna
gi|428698231|pdb|4GOP|Z Chain Z, Structure And Conformational Change Of A Replication
Protein A Heterotrimer Bound To Ssdna
gi|451928925|pdb|4GNX|C Chain C, Structure Of
gi|451928928|pdb|4GNX|Z Chain Z, Structure Of
Length = 444
Score = 310 bits (795), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 173/450 (38%), Positives = 254/450 (56%), Gaps = 22/450 (4%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
I PI L+PYQ RW IKARVT+K D+R ++N RG+GK+FS +LLD D GEI+ T FN V
Sbjct: 3 IYPIEGLSPYQNRWTIKARVTSKSDIRHWSNQRGEGKLFSVNLLD-DSGEIKATGFNDAV 61
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
DRFY +++ VYLISK + A+K F++L+NE+EI E ++ ++ CT+ D +P+ ++
Sbjct: 62 DRFYPLLQENHVYLISKARVNIAKKQFSNLQNEYEITFENSTEIEECTDATD-VPEVKYE 120
Query: 235 FRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGME-TQRRILNLKDTSGRSVELTLW 293
F I+E+ES E N DVIGI+ S I+ K Q+R L L D RSV+LTLW
Sbjct: 121 FVRINELESVEANQQCDVIGILDSYGELSEIVSKASQRPVQKRELTLVDQGNRSVKLTLW 180
Query: 294 GDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELRE 353
G K + V PVL+ K KV DF G+S+ S+ + INPD E+H LR
Sbjct: 181 G----KTAETFPTNAGVDEKPVLAFKGVKVGDFGGRSLSMFSSSTMLINPDITESHVLRG 236
Query: 354 WFDSGGKNA--------ATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRA 405
W+D+ G +A + GA +T+ Q+K+E LG SEKPD+ VRA
Sbjct: 237 WYDNDGAHAQFQPYTNGGVGGGAMGGGGAGANMAERRTIVQVKDENLGMSEKPDYFNVRA 296
Query: 406 FITFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQD 464
+ +IK ++ YTAC CNKKV N W+C++C++ +YRY+L + D
Sbjct: 297 TVVYIKQENLYYTAC----ASEGCNKKVNLDHENNWRCEKCDRSYATPEYRYILSTNVAD 352
Query: 465 QTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEEL 524
TG W++ F E +++G A EL+ L+ E + + F + Y+F + K +
Sbjct: 353 ATGQMWLSGFNEDATQLIGMSAGELHKLREESESE--FSAALHRAANRMYMFNCRAKMDT 410
Query: 525 YGDEQRVKITVIRADQVNYSSESRYLLDLI 554
+ D RV+ T+ RA V+++ L+D I
Sbjct: 411 FNDTARVRYTISRAAPVDFAKAGMELVDAI 440
>gi|405120230|gb|AFR95001.1| damaged DNA binding protein [Cryptococcus neoformans var. grubii
H99]
Length = 613
Score = 310 bits (795), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 180/509 (35%), Positives = 277/509 (54%), Gaps = 36/509 (7%)
Query: 59 NSQNPGSFSTPNSGTFRAPNAGSIVRSFQPTVQPPYQPPPNFRNHGPILKNEAPARIIPI 118
++Q G+ S P T AP G R+ P P P N ++ G + + PI
Sbjct: 127 SAQPGGAHSAPLQSTTTAPAPG---RAQVPARNAPSARPGNTKHKGDL------GPLYPI 177
Query: 119 AALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFY 178
L+PYQ RW IKARVT K D+R Y+N RGDGK+F+ +D + GEIR T FN VD FY
Sbjct: 178 EGLSPYQNRWTIKARVTQKSDIRHYSNQRGDGKLFNVTFMD-ETGEIRATGFNDAVDNFY 236
Query: 179 EIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHI 238
++EVG+V+ +S+ + A+K F+++ NE+EI E + ++ C D+S+P+ +++F+ I
Sbjct: 237 NLLEVGKVFFVSRARINIAKKQFSNVNNEYEIMFERDTEIEPCA--DESVPQVKYNFKGI 294
Query: 239 SEIESAENNSIVDVIGIVISVNPSVPIL-RKNGMETQRRILNLKDTSGRSVELTLWGDFC 297
++ + + + DVIG+V V + R +R L L D SG+SV LTLWG
Sbjct: 295 GDLGELQKDDVCDVIGVVREVGELGSVTSRATNKPFAKRELQLVDQSGQSVRLTLWG--- 351
Query: 298 NKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDS 357
K E PV++ K KV DF G+S+ + + INPD EAH LR WFD+
Sbjct: 352 -----KQAETFQADDQPVIAFKGVKVGDFGGRSLSMFSNATMTINPDIPEAHSLRGWFDA 406
Query: 358 GGKN-------AATV---SISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFI 407
G + A+V +I+ +A E+ KT++Q+K+E LG SEK D+ + A +
Sbjct: 407 EGHSKHFAAYTTASVGDSAINTATSAAARPAEL-KTIAQVKDEQLGMSEKTDFFSTEATV 465
Query: 408 TFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTG 467
FIK D F Y AC C KKV + G+ W C++C + DE +RY+L + D TG
Sbjct: 466 AFIKKDPFSYPACA---NPDNCAKKVVEDGSGWWCEKCQRRWDEPIHRYILSMNVMDYTG 522
Query: 468 LTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGD 527
W+TAF E+ E+I+G A +L LK E +D+ + Y+F++ K++ + D
Sbjct: 523 QFWMTAFNETAEQIMGISANDLMKLKNE-GNDLDYDAHFAKATARTYVFQMMAKQDSFND 581
Query: 528 EQRVKITVIRADQVNYSSESRYLLDLISK 556
+ RV+ + +Y ++S +L +IS+
Sbjct: 582 QVRVRYQCRKVAPPDYVADSAHLSQMISE 610
>gi|47221831|emb|CAG08885.1| unnamed protein product [Tetraodon nigroviridis]
Length = 631
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 179/497 (36%), Positives = 278/497 (55%), Gaps = 23/497 (4%)
Query: 62 NPGSFSTPNSGTFRAPNAGSIVRSFQPTVQPPYQPPPNFRNHGPILKNEAPA-RIIPIAA 120
+P +FS + +P+ S ++ T P P + P+ +I IA
Sbjct: 154 SPSTFSPAKA----SPSTFSPTKASPSTFSPAKASPSKVSPKKASSSSPGPSTNLISIAQ 209
Query: 121 LNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEI 180
LNPY +W I+ARV K +R ++N+RG+GK+FSF ++D + GEI++T FN VD+F+ +
Sbjct: 210 LNPYLSKWTIRARVMNKASIRNWSNSRGEGKLFSFVVVD-ESGEIKITVFNNEVDKFFPL 268
Query: 181 IEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISE 240
+E G+VY ISK +LK A K +N L +++E+ L A S++ C + D IP Q F I+E
Sbjct: 269 VEQGKVYYISKATLKVANKQYNTLNHDYEMTLHAHSSIVPCADGQD-IPAAQCDFVPIAE 327
Query: 241 IESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKE 300
+E+ + ++I+DVIG+ +V I + E +R L+L DT+G+ V TLWG+ E
Sbjct: 328 LENRDKDAIIDVIGVCKTVEDVSRITTRTSREVSKRTLHLIDTTGKMVAATLWGE----E 383
Query: 301 GQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGK 360
+K D PV+++K +++DF G+S+ T+ S+ + +NPD EA LR W+D GG
Sbjct: 384 AEKF----DGSEQPVVAIKGARLSDFGGRSLSTLFSSTVMVNPDIPEAIRLRAWYDHGGY 439
Query: 361 NAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTAC 420
+ S+S + G KT+S++KNE G K D+ + A + +I+ DS Y AC
Sbjct: 440 AQDSQSLSETKSRGSGARMNWKTLSEVKNENFGTRRK-DYFSCVATLLYIRKDSCLYRAC 498
Query: 421 PLMIGDRQCNKKVTQSGNRW-QCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGE 479
P CNKKV N W +C++CNQ+ +YR LL A + D WVT FQE+ E
Sbjct: 499 P----SSDCNKKVIDQFNGWFRCEKCNQDFPNFEYRLLLSANLADFGDNQWVTCFQETAE 554
Query: 480 EILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRAD 539
+LG A+ L L+ D+ F + + F Y+F++++K E Y DE RVK TV+
Sbjct: 555 VLLGHSAETLGRLRD--TDEAAFDAVFQKANFTSYIFKIRVKLETYNDESRVKATVMEVQ 612
Query: 540 QVNYSSESRYLLDLISK 556
+++ SR LL I K
Sbjct: 613 PLDHREYSRRLLGNIRK 629
>gi|115496244|ref|NP_001068644.1| replication protein A 70 kDa DNA-binding subunit [Bos taurus]
gi|111308484|gb|AAI19987.1| Replication protein A1, 70kDa [Bos taurus]
gi|296476839|tpg|DAA18954.1| TPA: replication protein A1 [Bos taurus]
Length = 616
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 168/443 (37%), Positives = 263/443 (59%), Gaps = 21/443 (4%)
Query: 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
A+++PIA+L PYQ +W I ARVT K +R ++N+RG+GK+FS +L+D + GEIR T FN
Sbjct: 182 AKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVD-ESGEIRATAFNE 240
Query: 173 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQ 232
D+F+ +I+V +VY SKG+LK A K F +KN++E+ ++V C E+ +P Q
Sbjct: 241 QADKFFPLIDVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPC-EDGHHLPTVQ 299
Query: 233 FSFRHISEIESAENNSIVDVIGIVISVNPSVPILRK-NGMETQRRILNLKDTSGRSVELT 291
F F I ++ES +S+VD+IGI + I+ K N E +R + L D SG+ V T
Sbjct: 300 FDFTGIGDLESKSKDSLVDIIGICKNYEDVTKIIVKSNNREVSKRNIYLMDMSGKVVNAT 359
Query: 292 LWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHEL 351
LWGD +K Q PV+++K +V+DF G+S+ + S+ + +NPD EA++L
Sbjct: 360 LWGDDADKFDGSRQ--------PVMAIKGARVSDFGGRSLSVLSSSTIIVNPDIPEAYKL 411
Query: 352 REWFDSGGKNAATVSISREIAAGGA--KNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITF 409
R WFDS G+ +SIS ++ +GGA N KT+ ++K+E LG+ +KPD+ + A + +
Sbjct: 412 RGWFDSEGQALDGISIS-DLKSGGAGGSNTNWKTLYEVKSENLGQGDKPDYFSSVATVVY 470
Query: 410 IKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGL 468
++ ++ Y ACP + CNKKV Q ++C++C+ E YR +L I D
Sbjct: 471 LRKENCMYQACPT----QDCNKKVIDQQNGLYRCEKCDSEFPNFKYRMILSVNIADFQEN 526
Query: 469 TWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDE 528
WVT FQES E ILG Y+ + + +++ F E+ ++ F + FR+++K E Y DE
Sbjct: 527 QWVTCFQESAEAILG--QSTAYLGELKEKNEQAFEEVFQNANFRSFTFRIRVKLETYNDE 584
Query: 529 QRVKITVIRADQVNYSSESRYLL 551
R+K TV+ V+Y R L+
Sbjct: 585 SRIKATVVDVKPVDYREYGRRLV 607
>gi|223942895|gb|ACN25531.1| unknown [Zea mays]
gi|414865518|tpg|DAA44075.1| TPA: replication protein A DNA-binding subunit [Zea mays]
Length = 617
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 175/464 (37%), Positives = 272/464 (58%), Gaps = 19/464 (4%)
Query: 102 NHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSD 161
N P+ R+ P+ LNPYQG W IK RVT+KG+LR Y NARG+G VF+ +L D D
Sbjct: 161 NTAPVKPLSMTKRVHPLITLNPYQGNWVIKVRVTSKGNLRTYRNARGEGCVFNVELTDED 220
Query: 162 GGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLC 221
G +I+ T FN +FY I E+G+VY +SKGSL+ A K F ++N++E+ L + V+
Sbjct: 221 GTQIQATMFNDAAKKFYPIFELGKVYYVSKGSLRIANKQFKTVQNDYEMSLNENAIVEE- 279
Query: 222 TEEDDSIPKQQFSFRHISEIES-AENNSIVDVIGIVISVNPSVPILRKNGMET-QRRILN 279
E + IP+ Q++ I ++ S +VD++G+V SV+P++ + RK ET +R +
Sbjct: 280 AEGETCIPQVQYNLVKIDQLGSYVGGRELVDIVGVVQSVSPTLSVRRKIDNETIPKRDIV 339
Query: 280 LKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQL 339
+ D SG++V ++LW D GQ+L M D PV+++KS KV+DF G S+ T+ + L
Sbjct: 340 VADDSGKTVSISLWNDLATTTGQELLNMADSS--PVVAIKSLKVSDFQGVSLSTVGKSTL 397
Query: 340 FINPDFAEAHELREWFDSGGKNAATVSISREIA---AGGAKNEIHKTV--SQIKNEGLGR 394
INPD EA L+ W+DS GK+ + I E+ AGG K+ V S I ++
Sbjct: 398 AINPDLHEAQNLKSWYDSEGKDTSLAPIGAEMGAARAGGFKSTYSDRVFLSHITSDPAMG 457
Query: 395 SEKPDWVTVRAFITFIKSD-SFCYTACPLMIGDRQCNKKVTQS-GNRWQCDRCNQEIDEC 452
EKP + ++ A I+ IK D + Y AC + CNKKVT++ G+ + C+ C + EC
Sbjct: 458 QEKPVFFSLYATISHIKPDQNMWYRAC------KTCNKKVTETFGSGYWCEGCQKNDSEC 511
Query: 453 DYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFN 512
RY++ ++ D TG W + F E E+I+GC A EL ++ E DD + ++ +
Sbjct: 512 SLRYIMVIKVSDPTGEAWFSVFNEHAEKIIGCSADELDRIRKEEGDD-SYVLKLKEATWV 570
Query: 513 QYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
+LFR+ + + Y +E+R +ITV V +++ES+YLL+ I+K
Sbjct: 571 PHLFRVSVTQHEYNNEKRQRITVRSEAPVEHAAESKYLLEQIAK 614
>gi|440912313|gb|ELR61897.1| Replication protein A 70 kDa DNA-binding subunit [Bos grunniens
mutus]
Length = 616
Score = 308 bits (790), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 168/443 (37%), Positives = 263/443 (59%), Gaps = 21/443 (4%)
Query: 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
A+++PIA+L PYQ +W I ARVT K +R ++N+RG+GK+FS +L+D + GEIR T FN
Sbjct: 182 AKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVD-ESGEIRATAFNE 240
Query: 173 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQ 232
D+F+ +I+V +VY SKG+LK A K F +KN++E+ ++V C E+ +P Q
Sbjct: 241 QADKFFPLIDVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPC-EDGHHLPTVQ 299
Query: 233 FSFRHISEIESAENNSIVDVIGIVISVNPSVPILRK-NGMETQRRILNLKDTSGRSVELT 291
F F I ++ES +S+VD+IGI + I+ K N E +R + L D SG+ V T
Sbjct: 300 FDFTGIGDLESKSKDSLVDIIGICKNYEDVTKIIVKSNNREVSKRNIYLMDMSGKVVNAT 359
Query: 292 LWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHEL 351
LWGD +K Q PV+++K +V+DF G+S+ + S+ + +NPD EA++L
Sbjct: 360 LWGDDADKFDGSRQ--------PVMAIKGARVSDFGGRSLSVLSSSTIIVNPDIPEAYKL 411
Query: 352 REWFDSGGKNAATVSISREIAAGGA--KNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITF 409
R WFDS G+ +SIS ++ +GGA N KT+ ++K+E LG+ +KPD+ + A + +
Sbjct: 412 RGWFDSEGQALDGISIS-DLKSGGAGGSNTNWKTLYEVKSENLGQGDKPDYFSSVATVVY 470
Query: 410 IKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGL 468
++ ++ Y ACP + CNKKV Q ++C++C+ E YR +L I D
Sbjct: 471 LRKENCMYQACPT----QDCNKKVIDQQNGLYRCEKCDSEFPNFKYRMILSVNIADFQEN 526
Query: 469 TWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDE 528
WVT FQES E ILG Y+ + + +++ F E+ ++ F + FR+++K E Y DE
Sbjct: 527 QWVTCFQESAEAILG--QSTAYLGELKEKNEQAFEEVFQNANFRSFTFRIRVKLETYNDE 584
Query: 529 QRVKITVIRADQVNYSSESRYLL 551
R+K TV+ V+Y R L+
Sbjct: 585 SRIKATVVDVKPVDYREYGRRLV 607
>gi|2258469|gb|AAB71836.1| replication protein A1 [Oryza sativa Indica Group]
gi|125542895|gb|EAY89034.1| hypothetical protein OsI_10518 [Oryza sativa Indica Group]
Length = 630
Score = 308 bits (789), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 171/464 (36%), Positives = 277/464 (59%), Gaps = 19/464 (4%)
Query: 102 NHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSD 161
N P + R+ P+ +LNPYQG W IK RVT+KG+LR Y NARG+G VF+ +L D D
Sbjct: 173 NAAPAARLAMTRRVHPLISLNPYQGNWIIKVRVTSKGNLRTYKNARGEGCVFNVELTDVD 232
Query: 162 GGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLC 221
G +I+ T FN +FY + E+G+VY ISKGSL+ A K F + N++E+ L + V+
Sbjct: 233 GTQIQATMFNEAAKKFYPMFELGKVYYISKGSLRVANKQFKTVHNDYEMTLNENAVVEEA 292
Query: 222 TEEDDSIPKQQFSFRHISEI-ESAENNSIVDVIGIVISVNPSVPILRKNGMET-QRRILN 279
E + IP+ Q++F I ++ +VDVIG+V SV+P++ + RK ET +R +
Sbjct: 293 -EGETFIPQIQYNFVKIDQLGPYVGGRELVDVIGVVQSVSPTLSVRRKIDNETIPKRDIV 351
Query: 280 LKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQL 339
+ D S ++V ++LW D GQ+L +MVD P++++KS KV+DF G S+ T+ + +
Sbjct: 352 VADDSSKTVTISLWNDLATTTGQELLDMVDSA--PIIAIKSLKVSDFQGLSLSTVGRSTI 409
Query: 340 FINPDFAEAHELREWFDSGGKNAATVSISREIAA---GGAKNEIHKTV--SQIKNEGLGR 394
+NPD EA +LR W+DS GK + SI ++ A GGA++ V S I ++
Sbjct: 410 VVNPDLPEAEQLRAWYDSEGKGTSMASIGSDMGASRVGGARSMYSDRVFLSHITSDPNLG 469
Query: 395 SEKPDWVTVRAFITFIKSD-SFCYTACPLMIGDRQCNKKVTQS-GNRWQCDRCNQEIDEC 452
+KP + ++ A+I+ IK D + Y AC + CNKKVT++ G+ + C+ C + EC
Sbjct: 470 QDKPVFFSLNAYISLIKPDQTMWYRAC------KTCNKKVTEAMGSGYWCEGCQKNDAEC 523
Query: 453 DYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFN 512
RY++ ++ D TG W++ F + E I+GC A EL ++ E DD + ++ +
Sbjct: 524 SLRYIMVIKVSDPTGEAWLSLFNDQAERIVGCSADELDRIRKEEGDDSYLLK-LKEATWV 582
Query: 513 QYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
+LFR+ + + Y +E+R +ITV V++++E++Y+L+ I+K
Sbjct: 583 PHLFRVSVTQNEYMNEKRQRITVRSEAPVDHAAEAKYMLEEIAK 626
>gi|115451537|ref|NP_001049369.1| Os03g0214100 [Oryza sativa Japonica Group]
gi|108706832|gb|ABF94627.1| replication factor-a protein 1 containing protein, expressed [Oryza
sativa Japonica Group]
gi|113547840|dbj|BAF11283.1| Os03g0214100 [Oryza sativa Japonica Group]
gi|125585388|gb|EAZ26052.1| hypothetical protein OsJ_09906 [Oryza sativa Japonica Group]
Length = 630
Score = 308 bits (789), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 171/464 (36%), Positives = 277/464 (59%), Gaps = 19/464 (4%)
Query: 102 NHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSD 161
N P + R+ P+ +LNPYQG W IK RVT+KG+LR Y NARG+G VF+ +L D D
Sbjct: 173 NAAPAARLAMTRRVHPLISLNPYQGNWIIKVRVTSKGNLRTYKNARGEGCVFNVELTDVD 232
Query: 162 GGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLC 221
G +I+ T FN +FY + E+G+VY ISKGSL+ A K F + N++E+ L + V+
Sbjct: 233 GTQIQATMFNEAAKKFYPMFELGKVYYISKGSLRVANKQFKTVHNDYEMTLNENAVVEEA 292
Query: 222 TEEDDSIPKQQFSFRHISEI-ESAENNSIVDVIGIVISVNPSVPILRKNGMET-QRRILN 279
E + IP+ Q++F I ++ +VDVIG+V SV+P++ + RK ET +R +
Sbjct: 293 -EGETFIPQIQYNFVKIDQLGPYVGGRELVDVIGVVQSVSPTLSVRRKIDNETIPKRDIV 351
Query: 280 LKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQL 339
+ D S ++V ++LW D GQ+L +MVD P++++KS KV+DF G S+ T+ + +
Sbjct: 352 VADDSSKTVTISLWNDLATTTGQELLDMVDSA--PIIAIKSLKVSDFQGLSLSTVGRSTI 409
Query: 340 FINPDFAEAHELREWFDSGGKNAATVSISREIAA---GGAKNEIHKTV--SQIKNEGLGR 394
+NPD EA +LR W+DS GK + SI ++ A GGA++ V S I ++
Sbjct: 410 VVNPDLPEAEQLRAWYDSEGKGTSMASIGSDMGASRVGGARSMYSDRVFLSHITSDPNLG 469
Query: 395 SEKPDWVTVRAFITFIKSD-SFCYTACPLMIGDRQCNKKVTQS-GNRWQCDRCNQEIDEC 452
+KP + ++ A+I+ IK D + Y AC + CNKKVT++ G+ + C+ C + EC
Sbjct: 470 QDKPVFFSLNAYISLIKPDQTMWYRAC------KTCNKKVTEAIGSGYWCEGCQKNDAEC 523
Query: 453 DYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFN 512
RY++ ++ D TG W++ F + E I+GC A EL ++ E DD + ++ +
Sbjct: 524 SLRYIMVIKVSDPTGEAWLSLFNDQAERIVGCSADELDRIRKEEGDDSYLLK-LKEATWV 582
Query: 513 QYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
+LFR+ + + Y +E+R +ITV V++++E++Y+L+ I+K
Sbjct: 583 PHLFRVSVTQNEYMNEKRQRITVRSEAPVDHAAEAKYMLEEIAK 626
>gi|357120348|ref|XP_003561889.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Brachypodium distachyon]
Length = 635
Score = 308 bits (789), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 174/464 (37%), Positives = 275/464 (59%), Gaps = 19/464 (4%)
Query: 102 NHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSD 161
N P + R+ P+ +LNPYQG W IK RVT+KG+LR Y NARG+G VF+ +L D D
Sbjct: 178 NAAPAARLAITRRVHPLISLNPYQGNWVIKVRVTSKGNLRTYRNARGEGHVFNVELTDED 237
Query: 162 GGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLC 221
G +I+ T FN +FY + E+G+VY ISKGSL+ A K F ++N++E+ L + V+
Sbjct: 238 GTQIQATMFNEAAKKFYPMFELGKVYYISKGSLRVANKQFKTVQNDYEMTLNENAVVEEA 297
Query: 222 TEEDDSIPKQQFSFRHISEI-ESAENNSIVDVIGIVISVNPSVPILRKNGMET-QRRILN 279
E + IP Q++F I + +VD+IG+V SV+P++ I RK ET +R +
Sbjct: 298 -EGESFIPPVQYNFVKIDHLGPYVGGRELVDIIGVVQSVSPTLSIRRKIDNETIPKRDIV 356
Query: 280 LKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQL 339
+ D S ++V +TLW D G++L +MVD PV++VKS KV+DF G S+ T+ + L
Sbjct: 357 VADDSNKTVTVTLWNDLATTIGEQLLDMVDSA--PVIAVKSLKVSDFQGVSVSTVGKSTL 414
Query: 340 FINPDFAEAHELREWFDSGGKNAATVSISREIAA---GGAKNEIHKTV--SQIKNEGLGR 394
INP+ EA +LR W++S GK + S+ ++ A GG+++ V S I ++
Sbjct: 415 VINPELPEADKLRTWYESEGKGTSMASVGADMGASRTGGSRSMYSDRVFLSHITSDPNLG 474
Query: 395 SEKPDWVTVRAFITFIKSD-SFCYTACPLMIGDRQCNKKVTQS-GNRWQCDRCNQEIDEC 452
+KP + ++ A+I+ IK D + Y AC + CNKKVT++ G+ + C+ C + +EC
Sbjct: 475 QDKPVFFSLNAYISHIKPDQTMWYRAC------KTCNKKVTEAVGSGYWCEGCQKNYEEC 528
Query: 453 DYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFN 512
RY++ ++ D TG W++ F + E I+GC A EL + E DD F ++ +
Sbjct: 529 MLRYIMAIKVSDPTGEAWLSLFNDQAERIVGCSADELDRSRKEEGDD-SFLLRLKEATWV 587
Query: 513 QYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
+LFR+ + + Y E+R +ITV V+Y++E+R+LL+ I+K
Sbjct: 588 PHLFRVSVSQNEYMGEKRQRITVRSESPVDYAAEARFLLEEIAK 631
>gi|240849249|ref|NP_001155361.1| replication protein A 70 kDa DNA-binding subunit [Ovis aries]
gi|238815019|gb|ACR56706.1| replication protein A1 [Ovis aries]
Length = 616
Score = 308 bits (789), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 167/443 (37%), Positives = 263/443 (59%), Gaps = 21/443 (4%)
Query: 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
A+++PIA+L PYQ +W I ARVT K +R ++N+RG+GK+FS +L+D + GEIR T FN
Sbjct: 182 AKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVD-ESGEIRATAFNE 240
Query: 173 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQ 232
D+F+ +I+V +VY SKG+LK A K F +KN++E+ ++V C E+ +P Q
Sbjct: 241 QADKFFPLIDVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPC-EDGRHLPTVQ 299
Query: 233 FSFRHISEIESAENNSIVDVIGIVISVNPSVPI-LRKNGMETQRRILNLKDTSGRSVELT 291
F F I ++ES +S+VD+IGI + I ++ N E +R + L D SG+ V T
Sbjct: 300 FDFTGIGDLESKSKDSLVDIIGICKNYEDVTKITVKSNNREVSKRNIYLMDMSGKVVNAT 359
Query: 292 LWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHEL 351
LWGD +K Q PV+++K +V+DF G+S+ + S+ + +NPD EA++L
Sbjct: 360 LWGDDADKFDGSRQ--------PVMAIKGARVSDFGGRSLSVLSSSTIIVNPDIPEAYKL 411
Query: 352 REWFDSGGKNAATVSISREIAAGGA--KNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITF 409
R WFDS G+ +SIS ++ +GGA N KT+ ++K+E LG+ +KPD+ + A + +
Sbjct: 412 RGWFDSEGQALDGISIS-DLKSGGAGGSNTNWKTLYEVKSENLGQGDKPDYFSSVATVVY 470
Query: 410 IKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGL 468
++ ++ Y ACP + CNKKV Q ++C++C+ E YR +L I D
Sbjct: 471 LRKENCMYQACPT----QDCNKKVIDQQNGLYRCEKCDSEFPNFKYRMILSVNIADFQEN 526
Query: 469 TWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDE 528
WVT FQES E ILG Y+ + + +++ F E+ ++ F + FR+++K E Y DE
Sbjct: 527 QWVTCFQESAEAILG--QNTAYLGELKEKNEQAFEEVFQNANFRSFTFRIRVKLETYNDE 584
Query: 529 QRVKITVIRADQVNYSSESRYLL 551
R+K TV+ V+Y R L+
Sbjct: 585 SRIKATVVDVKPVDYKEYGRRLV 607
>gi|31580977|dbj|BAC77529.1| replication protein A 70b [Oryza sativa Japonica Group]
Length = 630
Score = 308 bits (788), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 171/464 (36%), Positives = 277/464 (59%), Gaps = 19/464 (4%)
Query: 102 NHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSD 161
N P + R+ P+ +LNPYQG W IK RVT+KG+LR Y NARG+G VF+ +L D D
Sbjct: 173 NAAPAARLAMTRRVHPLISLNPYQGNWIIKVRVTSKGNLRTYKNARGEGCVFNVELTDVD 232
Query: 162 GGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLC 221
G +I+ T FN +FY + E+G+VY ISKGSL+ A K F + N++E+ L + V+
Sbjct: 233 GTQIQATMFNEAAKKFYPMFELGKVYYISKGSLRVADKQFKTVHNDYEMTLNENAVVEEA 292
Query: 222 TEEDDSIPKQQFSFRHISEI-ESAENNSIVDVIGIVISVNPSVPILRKNGMET-QRRILN 279
E + IP+ Q++F I ++ +VDVIG+V SV+P++ + RK ET +R +
Sbjct: 293 -EGETFIPQIQYNFVKIDQLGPYVGGRELVDVIGVVQSVSPTLSVRRKIDNETIPKRDIV 351
Query: 280 LKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQL 339
+ D S ++V ++LW D GQ+L +MVD P++++KS KV+DF G S+ T+ + +
Sbjct: 352 VADDSSKTVTISLWNDLATTTGQELLDMVDSA--PIIAIKSLKVSDFQGLSLSTVGRSTI 409
Query: 340 FINPDFAEAHELREWFDSGGKNAATVSISREIAA---GGAKNEIHKTV--SQIKNEGLGR 394
+NPD EA +LR W+DS GK + SI ++ A GGA++ V S I ++
Sbjct: 410 VLNPDLPEAEQLRAWYDSEGKGTSMASIGSDMGASRVGGARSMYSDRVFLSHITSDPNLG 469
Query: 395 SEKPDWVTVRAFITFIKSD-SFCYTACPLMIGDRQCNKKVTQS-GNRWQCDRCNQEIDEC 452
+KP + ++ A+I+ IK D + Y AC + CNKKVT++ G+ + C+ C + EC
Sbjct: 470 QDKPVFFSLNAYISLIKPDQTMWYRAC------KTCNKKVTEAIGSGYWCEGCQKNDAEC 523
Query: 453 DYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFN 512
RY++ ++ D TG W++ F + E I+GC A EL ++ E DD + ++ +
Sbjct: 524 SLRYIMVIKVSDPTGEAWLSLFNDQAERIVGCSADELDRIRKEEGDDSYLLK-LKEATWV 582
Query: 513 QYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
+LFR+ + + Y +E+R +ITV V++++E++Y+L+ I+K
Sbjct: 583 PHLFRVSVTQNEYMNEKRQRITVRSEAPVDHAAEAKYMLEEIAK 626
>gi|395536318|ref|XP_003770167.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit
[Sarcophilus harrisii]
Length = 607
Score = 307 bits (787), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 165/447 (36%), Positives = 266/447 (59%), Gaps = 19/447 (4%)
Query: 114 RIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAV 173
+++PIA+LNPYQ +W I ARVT K +R ++N+RG+GK+FS +++D + GEIR T FN
Sbjct: 171 KVVPIASLNPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIEMVD-ESGEIRATAFNDQ 229
Query: 174 VDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQF 233
VD+F+ +I+V +VY SKG+LK A K F +KN++E+ ++V LC E+ +P QF
Sbjct: 230 VDKFFPLIDVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVVLC-EDAHHLPTVQF 288
Query: 234 SFRHISEIESAENNSIVDVIGIVISV-NPSVPILRKNGMETQRRILNLKDTSGRSVELTL 292
F I ++E+ +S+VD+IG+ S + S +++ + E +R ++L DTSG+ V TL
Sbjct: 289 DFTVIGDLENKAKDSLVDIIGVCKSYEDASKVVVKSSNREVSKRNIHLMDTSGKVVTTTL 348
Query: 293 WGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELR 352
WG+ ++ Q PVL++K +V+DF G+S+ + S+ + +NPD EA +LR
Sbjct: 349 WGEEADRFDGSRQ--------PVLAIKGARVSDFGGRSLSVLSSSTMLVNPDIPEAFKLR 400
Query: 353 EWFDSGGKNAATVSISREIAAG-GAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIK 411
WFDS G+ VSIS G G N KT+ +K+E LG+ +K D+ + A + +++
Sbjct: 401 GWFDSEGQALEAVSISDARGGGTGGSNANWKTLYDVKSENLGQGDKADYFSCVATVVYLR 460
Query: 412 SDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTW 470
++ Y ACP + CNKKV Q ++C++C++E YR +L I D W
Sbjct: 461 KENCMYQACP----SQDCNKKVIDQQNGLYRCEKCDREFPSFKYRMILSVNIADFQENQW 516
Query: 471 VTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQR 530
VT FQES E ILG Y+ + + +++ F E+ ++ F Y F++++K E Y DE R
Sbjct: 517 VTCFQESAEAILG--QNTAYLGELKDKNEQAFEEVFQNANFRSYTFKIRVKLETYNDESR 574
Query: 531 VKITVIRADQVNYSSESRYLLDLISKS 557
+K +V+ V+Y + L+ I K+
Sbjct: 575 IKASVVDVKPVDYREYGKRLIMNIRKN 601
>gi|354504939|ref|XP_003514530.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit,
partial [Cricetulus griseus]
Length = 498
Score = 307 bits (787), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 168/443 (37%), Positives = 267/443 (60%), Gaps = 21/443 (4%)
Query: 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
++++PIA+L PYQ +W I ARVT K +R ++N+RG+GK+FS +L+D + GEIR T FN
Sbjct: 66 SKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVD-ESGEIRATAFNE 124
Query: 173 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQ 232
VD+F+ +IEV +VY SKG+LK A K F+ +KN++E+ ++V C E+ +P Q
Sbjct: 125 QVDKFFPLIEVNKVYYFSKGTLKIANKQFSAVKNDYEMTFNNETSVLPC-EDGHHLPTVQ 183
Query: 233 FSFRHISEIESAENNSIVDVIGIVISVNPSVPI-LRKNGMETQRRILNLKDTSGRSVELT 291
F F IS++ES +S+VD+IGI S S I ++ + E +R + L D SG+ V T
Sbjct: 184 FDFTGISDLESKSKDSLVDIIGICKSYEDSTKITVKSSNREVAKRNIYLMDMSGKVVTAT 243
Query: 292 LWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHEL 351
LWG+ +K Q PV+++K +V+DF G+S+ + S+ + +NPD EA++L
Sbjct: 244 LWGEDADKFDGSRQ--------PVMAIKGARVSDFGGRSLSVLSSSTIIVNPDIPEAYKL 295
Query: 352 REWFDSGGKNAATVSISREIAAGGA--KNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITF 409
R WFDS G+ VSIS ++ +GGA N KT+ + K+E LG+ +K D+ + A + F
Sbjct: 296 RGWFDSEGQALDGVSIS-DLRSGGAGGNNTNWKTLYEAKSENLGQGDKADYFSTVATVVF 354
Query: 410 IKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGL 468
++ ++ Y ACP + CNKKV Q ++C++C++E YR +L + D
Sbjct: 355 LRKENCMYQACPT----QDCNKKVIDQQNGLYRCEKCDREFPNFKYRMILSVNVADFQEN 410
Query: 469 TWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDE 528
WVT FQES E ILG Y+ + + +++ F E+ ++ F + FR+++K E Y DE
Sbjct: 411 QWVTCFQESAEAILG--QNTAYLGELKEKNEQAFEEVFQNANFRSFTFRIRVKLETYNDE 468
Query: 529 QRVKITVIRADQVNYSSESRYLL 551
R+K TV+ V+Y ++ L+
Sbjct: 469 SRIKATVMDVKPVDYRDYAKRLI 491
>gi|402222443|gb|EJU02510.1| hypothetical protein DACRYDRAFT_78925 [Dacryopinax sp. DJM-731 SS1]
Length = 602
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 174/476 (36%), Positives = 273/476 (57%), Gaps = 34/476 (7%)
Query: 89 TVQPPYQPPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARG 148
TVQ +QP P + KN P I PI L+PYQ +W IKARVT K D+R ++N +G
Sbjct: 143 TVQKSHQPAPGGTRSASMPKNGGP--IFPIEGLSPYQNKWTIKARVTNKSDIRHWSNQKG 200
Query: 149 DGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEW 208
+GK+FSF L+D + EIR T FN VD FY++I+ G+VY SKG + PA++ FN++ N +
Sbjct: 201 EGKLFSFTLMD-ETSEIRATAFNQQVDEFYDMIQEGKVYFFSKGRIGPAKRQFNNVSNLY 259
Query: 209 EIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRK 268
EI E + V+ C + D +P+ ++ F + ++ ++ DVIG+V V IL K
Sbjct: 260 EITFERNTEVEPCLDAGD-VPEVKYQFVTLEGLQEVPKDATCDVIGVVTEVGELGEILAK 318
Query: 269 -NGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFS 327
G +R +++ D SG LTLWG K G+ Q P+++ K +V+DF+
Sbjct: 319 ATGRSVPKRDISIVDRSGFFCRLTLWG----KSGETFQAPDQ----PIIAFKGVRVSDFN 370
Query: 328 GKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGA-------KNEI 380
G+S+ S+Q+ INPD +AH+LR W+DS G N + S AG +NE+
Sbjct: 371 GRSLSFQSSSQMSINPDIPDAHQLRGWYDSIGNNQPHHTFSSAAGAGAGGDRGQFNRNEL 430
Query: 381 HKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGN-R 439
KT++Q+K+EGLG EK D+ T +A + +K ++F Y AC +CNKKV Q+ + R
Sbjct: 431 -KTIAQVKDEGLGMGEKNDFFTTKASVIHVKQENFVYPAC----RSEKCNKKVVQTSDGR 485
Query: 440 WQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDD 499
W+C C DE +YRYLL + D TG W++AF ++G+ + A EL LK D+
Sbjct: 486 WECVSCGLTFDEPEYRYLLSISVADHTGQAWLSAFNDAGDMLFEMKAGELQNLKD--TDE 543
Query: 500 VRFGEI---IRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLD 552
F ++ +RS+++N F + +++ Y D+ +V+ + R +++ +E + L+D
Sbjct: 544 THFSKVMSDVRSKMYN---FSCRARQDTYNDQTKVRYNITRMTKIDLKTEMKALVD 596
>gi|395853270|ref|XP_003799138.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit
[Otolemur garnettii]
Length = 616
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 166/448 (37%), Positives = 266/448 (59%), Gaps = 19/448 (4%)
Query: 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
A+++PIA+L PYQ +W I ARVT K +R ++N+RG+GK+FS +L+D GEIR T FN
Sbjct: 182 AKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSVELVDQS-GEIRATAFND 240
Query: 173 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQ 232
VD+F+ +IEV +VY +KG+LK A K F+ +KN++E+ ++V C E+D +P Q
Sbjct: 241 QVDKFFPLIEVNKVYYFTKGTLKIANKQFSAVKNDYEMTFSNDTSVMPC-EDDHHLPTVQ 299
Query: 233 FSFRHISEIESAENNSIVDVIGIVISVNPSVPI-LRKNGMETQRRILNLKDTSGRSVELT 291
F F I ++E+ +S+VD+IG+ + + I ++ E +R + L DTSG+ V T
Sbjct: 300 FDFTGIGDLENKPKDSLVDIIGVCKNYEDATKITVKSTNREVAKRNIYLMDTSGKVVTTT 359
Query: 292 LWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHEL 351
LWG+ +K Q PV+++K +V+DF G+S+ + S+ + +NPD EA++L
Sbjct: 360 LWGEDADKFDGSRQ--------PVMAIKGARVSDFGGRSLSVLSSSTIIVNPDIPEAYKL 411
Query: 352 REWFDSGGKNAATVSISREIAAG-GAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFI 410
R WFDS G+ VSIS + G G N KT++++K+E LG+ +K D+ + A + ++
Sbjct: 412 RGWFDSEGQALDGVSISDLKSGGVGGSNTNWKTLNEVKSENLGQGDKADYFSSVATVVYL 471
Query: 411 KSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLT 469
+ ++ Y ACP + CNKKV Q ++C++C+ E YR +L I D
Sbjct: 472 RKENSMYQACPT----QDCNKKVIDQQNGLYRCEKCDSEFPNFKYRMILSVNIADFQDNQ 527
Query: 470 WVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQ 529
WVT FQES E ILG Y+ + + +++ F E+ ++ F + FR+++K E Y DE
Sbjct: 528 WVTCFQESAEAILG--QNTAYLGELKEKNEQAFEEVFQNANFRSFTFRIRVKLENYNDES 585
Query: 530 RVKITVIRADQVNYSSESRYLLDLISKS 557
R+K TV+ V+Y R L+ I ++
Sbjct: 586 RIKATVMDVKPVDYREYGRRLMTNIRRN 613
>gi|134110990|ref|XP_775959.1| hypothetical protein CNBD3660 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258625|gb|EAL21312.1| hypothetical protein CNBD3660 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 612
Score = 306 bits (785), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 183/518 (35%), Positives = 276/518 (53%), Gaps = 43/518 (8%)
Query: 53 QNSGTFNSQNPGSFSTP-NSGTFRAPNAGSIVRSFQPTVQPPYQPPPNFRNHGPILKNEA 111
++ + ++Q G+ S P S T AP + + +P P + GP+
Sbjct: 121 KSGASASAQPAGAHSAPLQSATAPAPARAQVPGRNASSARPGNTKPKG--DLGPLY---- 174
Query: 112 PARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFN 171
PI L+PYQ RW IKARVT K D+R Y+N RGDGK+F+ +D + GEIR T FN
Sbjct: 175 -----PIEGLSPYQNRWTIKARVTQKSDIRHYSNQRGDGKLFNVTFMD-ETGEIRATGFN 228
Query: 172 AVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQ 231
VD FY ++EVG+V+ +S+ + A+K F+++ NE+EI E + ++ C D+S+P+
Sbjct: 229 DAVDNFYNLLEVGKVFFVSRARINIAKKQFSNVNNEYEIMFERDTEIEPCA--DESVPQV 286
Query: 232 QFSFRHISEIESAENNSIVDVIGIVISVNPSVPIL-RKNGMETQRRILNLKDTSGRSVEL 290
+++F+ I ++ + + + DVIG+V V + R +R L L D SG+SV L
Sbjct: 287 KYNFKGIGDLGELQKDDVCDVIGVVREVGELGSVTSRATNKPFAKRELQLVDQSGQSVRL 346
Query: 291 TLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHE 350
TLWG K E PV++ K KV DF G+S+ + + INPD EAH
Sbjct: 347 TLWG--------KQAETFQADDQPVIAFKGVKVGDFGGRSLSMFSNATMTINPDIPEAHS 398
Query: 351 LREWFDSGGKNA-----ATVSISRE---IAAGGAKNEIH-KTVSQIKNEGLGRSEKPDWV 401
LR WFD+ G N T S+ AAG A KT++Q+K+E LG SEK D+
Sbjct: 399 LRGWFDAEGHNKHFTAYTTASVGDSAINTAAGAATRPAELKTIAQVKDEQLGMSEKTDFF 458
Query: 402 TVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQ 461
+ A + FIK D F Y AC C KKV + G+ W C++C + DE +RY+L
Sbjct: 459 STEATVAFIKKDPFSYPACA---NPDNCAKKVVEDGSGWWCEKCQRRWDEPIHRYILSMN 515
Query: 462 IQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQD---DVRFGEIIRSRVFNQYLFRL 518
+ D TG W+TAF E+ E+I+G A +L LK E D DV F + Y+F++
Sbjct: 516 VMDYTGQFWMTAFNETAEQIMGISANDLMKLKNEGNDLDYDVHFAKATA----RTYVFQM 571
Query: 519 KIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
K++ + D+ RV+ + +Y ++S +L +IS+
Sbjct: 572 MAKQDSFNDQVRVRYQCRKVAPPDYVADSAHLSQMISQ 609
>gi|449440852|ref|XP_004138198.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Cucumis sativus]
Length = 603
Score = 306 bits (784), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 173/499 (34%), Positives = 282/499 (56%), Gaps = 25/499 (5%)
Query: 68 TPNSGTFRAPNAGSIVRSFQPTVQPPYQPPPNFRNHGPILKNEAPARIIPIAALNPYQGR 127
T +GT P + +S V N P + R+ P+ LNPY G
Sbjct: 116 TEEAGTILKPKQELVAKSAAQIVHEQRM------NMAPAARMSMTRRVQPLVYLNPYLGD 169
Query: 128 WAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVY 187
W IK RVT KG+LR Y NA+G+G VF+ L D DG +I+ T FN +FYE +G+VY
Sbjct: 170 WTIKVRVTDKGNLRTYKNAQGEGCVFNVVLTDEDGTQIQATMFNDAARKFYEKFSLGKVY 229
Query: 188 LISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENN 247
+S+G+LK A K F ++N++E+ L S VD + E +P+ +++F I + N
Sbjct: 230 YVSRGTLKVANKKFKTVQNDYEMTLNVNSQVDEVSNEAAFVPETKYNFVKIDMLGPHVNG 289
Query: 248 -SIVDVIGIVISVNPSVPILRKNGMETQ-RRILNLKDTSGRSVELTLWGDFCNKEGQKLQ 305
+VDVIG+V +V+ ++ I RK ET +R + + D + ++V ++LW D GQ+L
Sbjct: 290 RDLVDVIGVVQNVSSTMSIRRKINNETAPKRDVTIADETKKTVVISLWNDLATTVGQELL 349
Query: 306 EMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGK---NA 362
++ D P++++K +V DF G S+ TI + + INPD EAH+LR W+DS GK +
Sbjct: 350 DIADQS--PIIALKYLRVGDFQGVSLSTISRSSITINPDIKEAHDLRSWYDSEGKAVSMS 407
Query: 363 ATVSISREIAAGGAKNEIHKTVSQ---IKNEGLGRSEKPDWVTVRAFITFIKSD-SFCYT 418
+ S G+++ +S ++N+ LG EKP + ++RA+++FIK D + Y
Sbjct: 408 SVSSGLSPSTKSGSRSMYSDRISLSHILENKSLGE-EKPTFFSIRAYVSFIKPDQTMWYR 466
Query: 419 ACPLMIGDRQCNKKVTQS-GNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQES 477
AC + CNKKVT++ G+ + CD C + +EC RY++ ++ D +G WV+ F E
Sbjct: 467 AC------KTCNKKVTEAIGSGYWCDNCQKNDEECSLRYIMVVRVSDASGEAWVSTFNEE 520
Query: 478 GEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIR 537
E I+GC A EL LK ++ ++ + ++ + +LFR+ + + Y +E+R +ITV
Sbjct: 521 AERIMGCSADELDQLKSQIGEENSYQLKLKEATWVPHLFRVSVSQNEYNNEKRQRITVRS 580
Query: 538 ADQVNYSSESRYLLDLISK 556
V++++ESR+LL+ I+K
Sbjct: 581 VAPVDFAAESRFLLEEIAK 599
>gi|449525283|ref|XP_004169647.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like,
partial [Cucumis sativus]
Length = 560
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 173/499 (34%), Positives = 282/499 (56%), Gaps = 25/499 (5%)
Query: 68 TPNSGTFRAPNAGSIVRSFQPTVQPPYQPPPNFRNHGPILKNEAPARIIPIAALNPYQGR 127
T +GT P + +S V N P + R+ P+ LNPY G
Sbjct: 73 TEEAGTILKPKQELVAKSAAQIVHEQRM------NMAPAARMSMTRRVQPLVYLNPYLGD 126
Query: 128 WAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVY 187
W IK RVT KG+LR Y NA+G+G VF+ L D DG +I+ T FN +FYE +G+VY
Sbjct: 127 WTIKVRVTDKGNLRTYKNAQGEGCVFNVVLTDEDGTQIQATMFNDAARKFYEKFSLGKVY 186
Query: 188 LISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENN 247
+S+G+LK A K F ++N++E+ L S VD + E +P+ +++F I + N
Sbjct: 187 YVSRGTLKVANKKFKTVQNDYEMTLNVNSQVDEVSNEAAFVPETKYNFVKIDMLGPHVNG 246
Query: 248 -SIVDVIGIVISVNPSVPILRKNGMETQ-RRILNLKDTSGRSVELTLWGDFCNKEGQKLQ 305
+VDVIG+V +V+ ++ I RK ET +R + + D + ++V ++LW D GQ+L
Sbjct: 247 RDLVDVIGVVQNVSSTMSIRRKINNETAPKRDVTIADETKKTVVISLWNDLATTVGQELL 306
Query: 306 EMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGK---NA 362
++ D P++++K +V DF G S+ TI + + INPD EAH+LR W+DS GK +
Sbjct: 307 DIADQS--PIIALKYLRVGDFQGVSLSTISRSSITINPDIKEAHDLRSWYDSEGKAVSMS 364
Query: 363 ATVSISREIAAGGAKNEIHKTVSQ---IKNEGLGRSEKPDWVTVRAFITFIKSD-SFCYT 418
+ S G+++ +S ++N+ LG EKP + ++RA+++FIK D + Y
Sbjct: 365 SVSSGLSPSTKSGSRSMYSDRISLSHILENKSLGE-EKPTFFSIRAYVSFIKPDQTMWYR 423
Query: 419 ACPLMIGDRQCNKKVTQS-GNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQES 477
AC + CNKKVT++ G+ + CD C + +EC RY++ ++ D +G WV+ F E
Sbjct: 424 AC------KTCNKKVTEAIGSGYWCDNCQKNDEECSLRYIMVVRVSDASGEAWVSTFNEE 477
Query: 478 GEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIR 537
E I+GC A EL LK ++ ++ + ++ + +LFR+ + + Y +E+R +ITV
Sbjct: 478 AERIMGCSADELDQLKSQIGEENSYQLKLKEATWVPHLFRVSVSQNEYNNEKRQRITVRS 537
Query: 538 ADQVNYSSESRYLLDLISK 556
V++++ESR+LL+ I+K
Sbjct: 538 VAPVDFAAESRFLLEEIAK 556
>gi|344290276|ref|XP_003416864.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit
[Loxodonta africana]
Length = 603
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 185/502 (36%), Positives = 284/502 (56%), Gaps = 26/502 (5%)
Query: 63 PGSFSTPNSGTFRAPNAGSIVRSFQPTVQPPYQPPPNF-RNHGPILKNEA---PARIIPI 118
P S ++P + + N S + S V Y P F + G L N A ++++PI
Sbjct: 118 PASAASPPTSKPQQQNGSSGMGSI---VSKAYGAPKTFGKAGGTSLVNTAGGTQSKVVPI 174
Query: 119 AALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFY 178
A+L PYQ +W I ARVT K +R ++N+RG+GK+FS +L+D + GEIR T FN D+F+
Sbjct: 175 ASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVD-ESGEIRATAFNEQADKFF 233
Query: 179 EIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHI 238
+IEV +VY SKG+LK A K F +KN++E+ ++V C E+ +P QF F I
Sbjct: 234 PLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPC-EDGHHLPTMQFDFTGI 292
Query: 239 SEIESAENNSIVDVIGIVISVNPSVPILRK-NGMETQRRILNLKDTSGRSVELTLWGDFC 297
++E+ +S+VD+IG+ S + I+ K N E +R + L D SG+ V TLWG+
Sbjct: 293 DDLENKSKDSLVDIIGVCKSYEDATKIVVKSNNREVSKRNIYLMDMSGKVVSATLWGEDA 352
Query: 298 NKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDS 357
+K Q PV+++K +V+DF G+S+ + S+ + +NPD EA++LR WFDS
Sbjct: 353 DKFDGTRQ--------PVMAIKGARVSDFGGRSLSVLSSSTVIVNPDIPEAYKLRGWFDS 404
Query: 358 GGKNAATVSISREIAAG-GAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFC 416
G+ VSIS + G G N KT+ ++K+E LG+ +K D+ + A + +++ ++
Sbjct: 405 EGQALDGVSISDLKSGGIGGSNTNWKTLYEVKSENLGQGDKADYFSCVATVVYLRKENCM 464
Query: 417 YTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQ 475
Y ACP + CNKKV Q ++C++C+ E YR +L A I D WVT FQ
Sbjct: 465 YQACPT----QDCNKKVIDQQNGLYRCEKCDSEFPNFKYRMILAANIADFLENQWVTCFQ 520
Query: 476 ESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITV 535
ES E ILG A L LK +++ F E+ ++ F + FR++IK E Y DE R+K +V
Sbjct: 521 ESAEAILGQSAAYLGELKE--KNEQAFEEVFQNASFRSFTFRIRIKLETYNDESRIKASV 578
Query: 536 IRADQVNYSSESRYLLDLISKS 557
+ V+Y R L+ I K+
Sbjct: 579 VDVKPVDYREYGRRLIVSIRKN 600
>gi|311268067|ref|XP_003131870.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit [Sus
scrofa]
Length = 616
Score = 305 bits (781), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 167/448 (37%), Positives = 264/448 (58%), Gaps = 19/448 (4%)
Query: 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
A+++PIA+L PYQ +W I ARVT K +R ++N+RG+GK+FS +L+D + GEIR T FN
Sbjct: 182 AKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVD-ESGEIRATAFNE 240
Query: 173 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQ 232
VD+F+ +I+V +VY SKG+LK A K F +KN++E+ ++V C E+ +P Q
Sbjct: 241 QVDKFFPLIDVNKVYYFSKGTLKIANKQFTAVKNDYEMTFSNETSVMPC-EDGHHLPTVQ 299
Query: 233 FSFRHISEIESAENNSIVDVIGIVISVNPSVPI-LRKNGMETQRRILNLKDTSGRSVELT 291
F F I+++E+ +S+VD+IGI + I ++ E +R + L D SG+ V T
Sbjct: 300 FDFTGIADLENKSKDSLVDIIGICKNYEDVTKITVKSTNREVSKRNIYLMDMSGKVVNAT 359
Query: 292 LWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHEL 351
LWG+ +K Q PV+++K +V+DF G+S+ + S+ + +NPD EA++L
Sbjct: 360 LWGEDADKFDGSRQ--------PVMAIKGARVSDFGGRSLSILSSSTVIVNPDIPEAYKL 411
Query: 352 REWFDSGGKNAATVSISREIAAG-GAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFI 410
R WFDS G+ VSIS + G G N KT+ ++K+E LG+ +KPD+ + A + ++
Sbjct: 412 RGWFDSEGQALDGVSISDLKSGGIGGSNTNWKTLYEVKSENLGQGDKPDYFSAVATVVYL 471
Query: 411 KSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLT 469
+ ++ Y ACP + CNKKV Q ++C++C+ E YR +L I D
Sbjct: 472 RKENCMYQACPT----QDCNKKVIDQQNGLYRCEKCDSEFPNFKYRMILSVNIADFQENQ 527
Query: 470 WVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQ 529
WVT FQES E ILG Y+ + + +++ F E+ ++ F + FR+++K E Y DE
Sbjct: 528 WVTCFQESAEAILG--QSTAYLGELKEKNEQAFEEVFQNANFRSFTFRIRVKLETYNDES 585
Query: 530 RVKITVIRADQVNYSSESRYLLDLISKS 557
R+K TV+ V+Y R L+ I K+
Sbjct: 586 RIKGTVMDVKPVDYKEYGRRLIMSIRKN 613
>gi|74214510|dbj|BAE31105.1| unnamed protein product [Mus musculus]
Length = 644
Score = 305 bits (781), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 170/449 (37%), Positives = 268/449 (59%), Gaps = 19/449 (4%)
Query: 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
++++PIA+L PYQ +W I ARVT K +R ++N+RG+GK+FS +L+D + GEIR T FN
Sbjct: 212 SKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVD-ESGEIRATAFNE 270
Query: 173 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQ 232
VD+F+ +IEV +VY SKG+LK A K F+ +KN++E+ ++V C E+ +P Q
Sbjct: 271 QVDKFFPLIEVNKVYYFSKGALKIANKQFSAVKNDYEMTFNNETSVLPC-EDGHHLPTVQ 329
Query: 233 FSFRHISEIESAENNSIVDVIGIVISVNPSVPI-LRKNGMETQRRILNLKDTSGRSVELT 291
F F I ++ES +++VD+IGI S S+ I ++ N E +R + L D SG+ V T
Sbjct: 330 FDFTGIGDLESKAKDALVDIIGICKSYEDSIKITVKSNNREVAKRNIYLMDMSGKVVTTT 389
Query: 292 LWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHEL 351
LWG+ +K D PV+++K +V+DF G+S+ + S+ + +NPD EA++L
Sbjct: 390 LWGEDADK--------FDGSRQPVMAIKGARVSDFGGRSLSVLSSSTVIVNPDIPEAYKL 441
Query: 352 REWFDSGGKNAATVSISREIAAG-GAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFI 410
R WFDS G+ VSIS + G G N KT+ + K+E LG+ +K D+ + A + F+
Sbjct: 442 RGWFDSEGQALDGVSISDHRSGGAGGGNTNWKTLHEAKSENLGQGDKADYFSTVAAVVFL 501
Query: 411 KSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLT 469
+ ++ Y ACP + CNKKV Q ++C++C++E YR +L A I D
Sbjct: 502 RKENCMYQACPT----QDCNKKVIDQQNGLYRCEKCDREFPNFKYRMILSANIADFQENQ 557
Query: 470 WVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQ 529
WVT FQES E ILG +Y+ + + +++ F E+ ++ F + FR+++K E Y DE
Sbjct: 558 WVTCFQESAEAILG--QNTMYLGELKEKNEQAFEEVFQNANFRSFTFRIRVKLETYNDES 615
Query: 530 RVKITVIRADQVNYSSESRYLLDLISKSF 558
R+K TV+ V++ R L+ I K+
Sbjct: 616 RIKATVMDVKPVDFRDYGRRLIANIRKNM 644
>gi|255982530|ref|NP_001157695.1| replication protein A 70 kDa DNA-binding subunit isoform 1 [Mus
musculus]
Length = 644
Score = 305 bits (781), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 170/449 (37%), Positives = 268/449 (59%), Gaps = 19/449 (4%)
Query: 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
++++PIA+L PYQ +W I ARVT K +R ++N+RG+GK+FS +L+D + GEIR T FN
Sbjct: 212 SKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVD-ESGEIRATAFNE 270
Query: 173 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQ 232
VD+F+ +IEV +VY SKG+LK A K F+ +KN++E+ ++V C E+ +P Q
Sbjct: 271 QVDKFFPLIEVNKVYYFSKGALKIANKQFSAVKNDYEMTFNNETSVLPC-EDGHHLPTVQ 329
Query: 233 FSFRHISEIESAENNSIVDVIGIVISVNPSVPI-LRKNGMETQRRILNLKDTSGRSVELT 291
F F I ++ES +++VD+IGI S S+ I ++ N E +R + L D SG+ V T
Sbjct: 330 FDFTGIGDLESKAKDALVDIIGICKSYEDSIKITVKSNNREVAKRNIYLMDMSGKVVTTT 389
Query: 292 LWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHEL 351
LWG+ +K D PV+++K +V+DF G+S+ + S+ + +NPD EA++L
Sbjct: 390 LWGEDADK--------FDGSRQPVMAIKGARVSDFGGRSLSVLSSSTVIVNPDIPEAYKL 441
Query: 352 REWFDSGGKNAATVSISREIAAG-GAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFI 410
R WFDS G+ VSIS + G G N KT+ + K+E LG+ +K D+ + A + F+
Sbjct: 442 RGWFDSEGQALDGVSISDHRSGGAGGGNTNWKTLHEAKSENLGQGDKADYFSTVAAVVFL 501
Query: 411 KSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLT 469
+ ++ Y ACP + CNKKV Q ++C++C++E YR +L A I D
Sbjct: 502 RKENCMYQACPT----QDCNKKVIDQQNGLYRCEKCDREFPNFKYRMILSANIADFQENQ 557
Query: 470 WVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQ 529
WVT FQES E ILG +Y+ + + +++ F E+ ++ F + FR+++K E Y DE
Sbjct: 558 WVTCFQESAEAILG--QNTMYLGELKEKNEQAFEEVFQNANFRSFTFRIRVKLETYNDES 615
Query: 530 RVKITVIRADQVNYSSESRYLLDLISKSF 558
R+K TV+ V++ R L+ I K+
Sbjct: 616 RIKATVMDVKPVDFRDYGRRLIANIRKNM 644
>gi|334324842|ref|XP_001371635.2| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Monodelphis domestica]
Length = 868
Score = 305 bits (780), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 164/446 (36%), Positives = 264/446 (59%), Gaps = 19/446 (4%)
Query: 114 RIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAV 173
+++PIA+LNPYQ +W I ARVT K +R ++N+RG+GK+FS +++D + GEIR T FN
Sbjct: 307 KVVPIASLNPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIEMVD-ESGEIRATAFNDQ 365
Query: 174 VDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQF 233
VD+F+ +I+V +VY SKG+LK A K F +KN++E+ ++V LC E+ +P QF
Sbjct: 366 VDKFFPLIDVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVVLC-EDAHHLPTVQF 424
Query: 234 SFRHISEIESAENNSIVDVIGIVISV-NPSVPILRKNGMETQRRILNLKDTSGRSVELTL 292
F I ++E+ +S+VD+IG+ S + S +++ + E +R ++L DTSG+ V TL
Sbjct: 425 DFTVIGDLENKAKDSLVDIIGVCKSYEDASKVVVKSSNREVSKRNVHLMDTSGKVVTTTL 484
Query: 293 WGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELR 352
WG+ ++ D PVL++K +V+DF G+S+ + S+ + +NPD EA +LR
Sbjct: 485 WGEDADR--------FDGSRQPVLAIKGARVSDFGGRSLSVLSSSTILVNPDIPEAFKLR 536
Query: 353 EWFDSGGKNAATVSISREIAAG-GAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIK 411
WFDS G+ VSIS G G N KT+ + K+E LG+ +K D+ + + +++
Sbjct: 537 GWFDSEGQALEVVSISDARGGGMGGSNTNWKTLYEAKSENLGQGDKADYFSCVGTVVYLR 596
Query: 412 SDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTW 470
++ Y ACP + CNKKV Q ++C++C++E YR +L I D W
Sbjct: 597 KENCMYQACP----SQDCNKKVIDQQNGLYRCEKCDREFPSFKYRMILSVNIADFQENQW 652
Query: 471 VTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQR 530
VT FQES E ILG Y+ + + +++ F E+ ++ F Y F++++K E Y DE R
Sbjct: 653 VTCFQESAEAILG--QNTAYLGELKDKNEQAFEEVFQNANFRSYTFKIRVKLETYNDESR 710
Query: 531 VKITVIRADQVNYSSESRYLLDLISK 556
+K +V+ V+Y + L+ I K
Sbjct: 711 IKASVLDVKPVDYREYGKRLIMNIRK 736
>gi|74143871|dbj|BAE41250.1| unnamed protein product [Mus musculus]
gi|74195701|dbj|BAE39655.1| unnamed protein product [Mus musculus]
Length = 621
Score = 305 bits (780), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 170/449 (37%), Positives = 268/449 (59%), Gaps = 19/449 (4%)
Query: 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
++++PIA+L PYQ +W I ARVT K +R ++N+RG+GK+FS +L+D + GEIR T FN
Sbjct: 189 SKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVD-ESGEIRATAFNE 247
Query: 173 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQ 232
VD+F+ +IEV +VY SKG+LK A K F+ +KN++E+ ++V C E+ +P Q
Sbjct: 248 QVDKFFPLIEVNKVYYFSKGALKIANKQFSAVKNDYEMTFNNETSVLPC-EDGHHLPTVQ 306
Query: 233 FSFRHISEIESAENNSIVDVIGIVISVNPSVPI-LRKNGMETQRRILNLKDTSGRSVELT 291
F F I ++ES +++VD+IGI S S+ I ++ N E +R + L D SG+ V T
Sbjct: 307 FDFTGIGDLESKAKDALVDIIGICKSYEDSIKITVKSNNREVAKRNIYLMDMSGKVVTTT 366
Query: 292 LWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHEL 351
LWG+ +K Q PV+++K +V+DF G+S+ + S+ + +NPD EA++L
Sbjct: 367 LWGEDADKFDGSRQ--------PVMAIKGARVSDFGGRSLSVLSSSTVIVNPDIPEAYKL 418
Query: 352 REWFDSGGKNAATVSISREIAAG-GAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFI 410
R WFDS G+ VSIS + G G N KT+ + K+E LG+ +K D+ + A + F+
Sbjct: 419 RGWFDSEGQALDGVSISDHRSGGAGGGNTNWKTLHEAKSENLGQGDKADYFSTVAAVVFL 478
Query: 411 KSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLT 469
+ ++ Y ACP + CNKKV Q ++C++C++E YR +L A I D
Sbjct: 479 RKENCMYQACPT----QDCNKKVIDQQNGLYRCEKCDREFPNFKYRMILSANIADFQENQ 534
Query: 470 WVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQ 529
WVT FQES E ILG +Y+ + + +++ F E+ ++ F + FR+++K E Y DE
Sbjct: 535 WVTCFQESAEAILG--QNTMYLGELKEKNEQAFEEVFQNANFRSFTFRIRVKLETYNDES 592
Query: 530 RVKITVIRADQVNYSSESRYLLDLISKSF 558
R+K TV+ V++ R L+ I K+
Sbjct: 593 RIKATVMDVKPVDFRDYGRRLIANIRKNM 621
>gi|18390321|ref|NP_080929.1| replication protein A 70 kDa DNA-binding subunit isoform 2 [Mus
musculus]
gi|81879403|sp|Q8VEE4.1|RFA1_MOUSE RecName: Full=Replication protein A 70 kDa DNA-binding subunit;
Short=RP-A p70; AltName: Full=Replication factor A
protein 1; Short=RF-A protein 1
gi|17512293|gb|AAH19119.1| Replication protein A1 [Mus musculus]
gi|74139176|dbj|BAE38476.1| unnamed protein product [Mus musculus]
gi|74139822|dbj|BAE31755.1| unnamed protein product [Mus musculus]
gi|74178123|dbj|BAE29849.1| unnamed protein product [Mus musculus]
gi|74195120|dbj|BAE28302.1| unnamed protein product [Mus musculus]
gi|74195944|dbj|BAE30530.1| unnamed protein product [Mus musculus]
gi|74222487|dbj|BAE38134.1| unnamed protein product [Mus musculus]
gi|148680853|gb|EDL12800.1| replication protein A1 [Mus musculus]
Length = 623
Score = 305 bits (780), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 170/449 (37%), Positives = 268/449 (59%), Gaps = 19/449 (4%)
Query: 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
++++PIA+L PYQ +W I ARVT K +R ++N+RG+GK+FS +L+D + GEIR T FN
Sbjct: 191 SKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVD-ESGEIRATAFNE 249
Query: 173 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQ 232
VD+F+ +IEV +VY SKG+LK A K F+ +KN++E+ ++V C E+ +P Q
Sbjct: 250 QVDKFFPLIEVNKVYYFSKGALKIANKQFSAVKNDYEMTFNNETSVLPC-EDGHHLPTVQ 308
Query: 233 FSFRHISEIESAENNSIVDVIGIVISVNPSVPI-LRKNGMETQRRILNLKDTSGRSVELT 291
F F I ++ES +++VD+IGI S S+ I ++ N E +R + L D SG+ V T
Sbjct: 309 FDFTGIGDLESKAKDALVDIIGICKSYEDSIKITVKSNNREVAKRNIYLMDMSGKVVTTT 368
Query: 292 LWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHEL 351
LWG+ +K Q PV+++K +V+DF G+S+ + S+ + +NPD EA++L
Sbjct: 369 LWGEDADKFDGSRQ--------PVMAIKGARVSDFGGRSLSVLSSSTVIVNPDIPEAYKL 420
Query: 352 REWFDSGGKNAATVSISREIAAG-GAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFI 410
R WFDS G+ VSIS + G G N KT+ + K+E LG+ +K D+ + A + F+
Sbjct: 421 RGWFDSEGQALDGVSISDHRSGGAGGGNTNWKTLHEAKSENLGQGDKADYFSTVAAVVFL 480
Query: 411 KSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLT 469
+ ++ Y ACP + CNKKV Q ++C++C++E YR +L A I D
Sbjct: 481 RKENCMYQACPT----QDCNKKVIDQQNGLYRCEKCDREFPNFKYRMILSANIADFQENQ 536
Query: 470 WVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQ 529
WVT FQES E ILG +Y+ + + +++ F E+ ++ F + FR+++K E Y DE
Sbjct: 537 WVTCFQESAEAILG--QNTMYLGELKEKNEQAFEEVFQNANFRSFTFRIRVKLETYNDES 594
Query: 530 RVKITVIRADQVNYSSESRYLLDLISKSF 558
R+K TV+ V++ R L+ I K+
Sbjct: 595 RIKATVMDVKPVDFRDYGRRLIANIRKNM 623
>gi|321257561|ref|XP_003193631.1| damaged DNA binding protein [Cryptococcus gattii WM276]
gi|317460101|gb|ADV21844.1| Damaged DNA binding protein, putative [Cryptococcus gattii WM276]
Length = 598
Score = 305 bits (780), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 178/513 (34%), Positives = 269/513 (52%), Gaps = 47/513 (9%)
Query: 53 QNSGTFNSQNPGSFSTPNSGTFRAPNAGSIVRSFQPTVQPPYQPPPNFRNHGPILKNEAP 112
+ + ++Q G+ S P+ AP + R P P N + G +
Sbjct: 121 KTGASASAQPAGANSAPHQSATSAPASA---RGQAPARNAPSARSGNTKPKGDL------ 171
Query: 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
+ PI L+PYQ RW IKARVT K D+R Y+N RGDGK+F+ +D + GEIR T FN
Sbjct: 172 GPLYPIEGLSPYQNRWTIKARVTQKSDIRHYSNQRGDGKLFNVTFMD-ETGEIRATGFND 230
Query: 173 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQ 232
VD FY ++EVG+V+ +S+ + A+K F+++ NE+EI E + ++ C D+S+P+ +
Sbjct: 231 AVDNFYNLLEVGKVFFVSRARINIAKKQFSNVNNEYEIMFERDTEIEPCA--DESVPQVK 288
Query: 233 FSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTL 292
+SF+ I ++ + + + DVIG+V E +R L L D SG+SV LTL
Sbjct: 289 YSFKGIGDLGELQKDDVCDVIGVV--------------REFAKRDLQLVDQSGQSVRLTL 334
Query: 293 WGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELR 352
WG K E PV++ K KV DF G+S+ + + INPD EAH LR
Sbjct: 335 WG--------KQAETFQADDQPVIAFKGVKVGDFGGRSLSMFSNATMTINPDIPEAHSLR 386
Query: 353 EWFDSGGKNA-------ATV--SISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTV 403
WFD+ G N A+V S A G + KT++Q K+E LG SEK D+ +
Sbjct: 387 GWFDAEGHNKHFTAYTNASVGDSAVNTAAGAGTRPAELKTIAQAKDEQLGMSEKTDFFST 446
Query: 404 RAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQ 463
A + FIK D F Y AC C KKV + G+ W C++C + DE +RY+L +
Sbjct: 447 EATVAFIKKDPFSYPACA---NPDNCAKKVVEDGSGWWCEKCQRRWDEPIHRYILSLNVM 503
Query: 464 DQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEE 523
D TG W+TAF E+ E+I+ A +L LK E +D+ + Y+F++ K++
Sbjct: 504 DYTGQFWMTAFNETAEQIMSISANDLMKLKNE-GNDLDYDAHFAKATARTYVFQMMAKQD 562
Query: 524 LYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
+ D+ RV+ + +Y ++S YL +IS+
Sbjct: 563 SFNDQVRVRYQCRKVATPDYVADSAYLSQMISQ 595
>gi|58266158|ref|XP_570235.1| damaged DNA binding protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|57226468|gb|AAW42928.1| damaged DNA binding protein, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 597
Score = 304 bits (779), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 182/517 (35%), Positives = 274/517 (52%), Gaps = 56/517 (10%)
Query: 53 QNSGTFNSQNPGSFSTP-NSGTFRAPNAGSIVRSFQPTVQPPYQPPPNFRNHGPILKNEA 111
++ + ++Q G+ S P S T AP + + +P P + GP+
Sbjct: 121 KSGASASAQPAGAHSAPLQSATAPAPARAQVPGRNASSARPGNTKPKG--DLGPLY---- 174
Query: 112 PARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFN 171
PI L+PYQ RW IKARVT K D+R Y+N RGDGK+F+ +D + GEIR T FN
Sbjct: 175 -----PIEGLSPYQNRWTIKARVTQKSDIRHYSNQRGDGKLFNVTFMD-ETGEIRATGFN 228
Query: 172 AVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQ 231
VD FY ++EVG+V+ +S+ + A+K F+++ NE+EI E + ++ C D+S+P+
Sbjct: 229 DAVDNFYNLLEVGKVFFVSRARINIAKKQFSNVNNEYEIMFERDTEIEPCA--DESVPQV 286
Query: 232 QFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELT 291
+++F+ I ++ + + + DVIG+V E +R L L D SG+SV LT
Sbjct: 287 KYNFKGIGDLGELQKDDVCDVIGVV--------------REFAKRELQLVDQSGQSVRLT 332
Query: 292 LWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHEL 351
LWG K E PV++ K KV DF G+S+ + + INPD EAH L
Sbjct: 333 LWG--------KQAETFQADDQPVIAFKGVKVGDFGGRSLSMFSNATMTINPDIPEAHSL 384
Query: 352 REWFDSGGKNA-----ATVSISRE---IAAGGAKNEIH-KTVSQIKNEGLGRSEKPDWVT 402
R WFD+ G N T S+ AAG A KT++Q+K+E LG SEK D+ +
Sbjct: 385 RGWFDAEGHNKHFTAYTTASVGDSAINTAAGAATRPAELKTIAQVKDEQLGMSEKTDFFS 444
Query: 403 VRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQI 462
A + FIK D F Y AC C KKV + G+ W C++C + DE +RY+L +
Sbjct: 445 TEATVAFIKKDPFSYPACA---NPDNCAKKVVEDGSGWWCEKCQRRWDEPIHRYILSMNV 501
Query: 463 QDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQD---DVRFGEIIRSRVFNQYLFRLK 519
D TG W+TAF E+ E+I+G A +L LK E D DV F + Y+F++
Sbjct: 502 MDYTGQFWMTAFNETAEQIMGISANDLMKLKNEGNDLDYDVHFAKATA----RTYVFQMM 557
Query: 520 IKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
K++ + D+ RV+ + +Y ++S +L +IS+
Sbjct: 558 AKQDSFNDQVRVRYQCRKVAPPDYVADSAHLSQMISQ 594
>gi|156545235|ref|XP_001604531.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Nasonia vitripennis]
Length = 595
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 174/476 (36%), Positives = 263/476 (55%), Gaps = 23/476 (4%)
Query: 88 PTVQPPYQPPPNFRN----HGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRY 143
PT Q +P P N PI+ + APA PIAAL+PY RW IKARVT K +R +
Sbjct: 130 PTNQQVARPAPQLNNLVDIMNPIMNSNAPAFTTPIAALSPYHSRWVIKARVTNKSQIRTW 189
Query: 144 NNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNH 203
+N+RG+GK FS DL+D + EIR T F D+FY++IE+ +VY ISK LKPA K FNH
Sbjct: 190 SNSRGEGKFFSMDLID-ESSEIRCTAFRDQCDKFYDLIEIDKVYYISKCQLKPANKQFNH 248
Query: 204 LKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSV 263
L+N++E+ L S + +C EE ++IP QF+F IS IE+ N I+D++GIV + +
Sbjct: 249 LRNDYEMSLTYDSQIAICNEETETIPSLQFNFVPISTIETMPTNGIIDILGIVKTCSDLQ 308
Query: 264 PILRK-NGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGK 322
++ G E ++ + + D + + +TLW +K Q D PV+++K K
Sbjct: 309 TFTKRLTGQELTKKDVGVVDENNYLINVTLW-------AEKAQNF-DGSGNPVVAIKGAK 360
Query: 323 VNDFS-GKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIH 381
+ +F+ GK++ +P++ L +NPD AH+LR WF + G + S+SR GG +
Sbjct: 361 IGEFNGGKTLSLLPTSILRVNPDIPTAHKLRSWFSTIGATTESHSLSRTSNDGGINGSLL 420
Query: 382 KTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRW 440
T S++ LG P T +A + IK+++ Y +CP C KKV QS +
Sbjct: 421 -TFSEVDENKLGHPHMPCVYTTKATVNLIKAENALYKSCP----SENCKKKVVDQSNGMY 475
Query: 441 QCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDV 500
+C++C ++ YR L+ A + D TG W+ AF + E +L EL LK E D
Sbjct: 476 RCEKCAKDYPTFTYRLLVNAYLVDWTGNQWIAAFNDEAEILLNGSGPELGELK-EKDFDA 534
Query: 501 RFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
+I + F Y+F++++K+E + DE R+K TV+ VNY +LL I K
Sbjct: 535 YLKKIAETS-FKSYIFKIRVKQETFNDETRLKSTVLSVQPVNYKMYLDHLLSKIQK 589
>gi|388581219|gb|EIM21529.1| replication factor-a protein [Wallemia sebi CBS 633.66]
Length = 599
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 179/481 (37%), Positives = 278/481 (57%), Gaps = 35/481 (7%)
Query: 86 FQPTVQPPYQPPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNN 145
+P V+P +P NF + GP ++AP + PI L+PYQ +W IKARVT K D++ ++N
Sbjct: 140 IKPDVKPDIKP--NF-SKGP--SSQAP--VYPIEGLSPYQNKWTIKARVTQKSDIKFWSN 192
Query: 146 ARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLK 205
RG+GK+FS +L+D + GEIR T FN VD FY ++E G+V+ I+K ++ A+K F++L+
Sbjct: 193 QRGEGKLFSVNLMD-ETGEIRATGFNESVDEFYNMLEEGKVFFITKARVQIAKKQFSNLQ 251
Query: 206 NEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISV-NPSVP 264
NE+EI + T+ ++ C + D +P ++SF + +E+ E N+I DV+G+V + PS
Sbjct: 252 NEYEIAFDKTTHIEPCYDTSD-VPDVKYSFTELQNLENLEPNAITDVLGVVTTAEEPSQI 310
Query: 265 ILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVN 324
I + +R LN+ D S +SV LTLWG KL E D PV++ K KV+
Sbjct: 311 ISKSTQKPYTKRELNIVDRSQQSVRLTLWG--------KLAENFDQVNEPVIAFKGVKVS 362
Query: 325 DFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAA-----GGAK-N 378
DF G+S+ + ++ LF+NPD EAH LR W+D GKN + + + G K N
Sbjct: 363 DFGGRSLSMVGASTLFVNPDIPEAHSLRGWYDQQGKNEQFSTFNNSSSTVKPEPGTVKPN 422
Query: 379 EIHKTVSQIKNE--GLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQS 436
EI KT+ Q+K GL S KPD+ T +A +T+IK ++ Y +CP + KK+TQ
Sbjct: 423 EI-KTLEQVKQSQLGLNDSGKPDYWTGKATVTYIKKENITYPSCPNDM------KKLTQD 475
Query: 437 GN-RWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYE 495
N +W+C++C D +YRY++ D TG W++ F + G E+ PA +L +
Sbjct: 476 MNDKWRCEKCESSFDAPEYRYIITCNATDHTGQIWLSGFNDFGLELFKMPANDLQAM-VN 534
Query: 496 LQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLIS 555
DD F +++ + + + F + K++ + D RV+ + RA VNY SE L + IS
Sbjct: 535 NGDDASFEAAVKNALGSSFNFNCRAKQDTFNDNVRVRHQINRASTVNYKSEINRLCETIS 594
Query: 556 K 556
K
Sbjct: 595 K 595
>gi|443719869|gb|ELU09821.1| hypothetical protein CAPTEDRAFT_172916 [Capitella teleta]
Length = 608
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 162/434 (37%), Positives = 254/434 (58%), Gaps = 18/434 (4%)
Query: 110 EAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTC 169
++P R+ PI++LNPYQ RW IK RVT+K +R ++N+RG+GK+FS +D D GEI+ T
Sbjct: 172 DSPVRVHPISSLNPYQNRWTIKVRVTSKSQIRTWSNSRGEGKLFSMTFMD-DSGEIKATA 230
Query: 170 FNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIP 229
F VD+FY++IE+ +V+ + KG+LK A K +N N++E+ + + C ++D S+P
Sbjct: 231 FKDQVDKFYDMIEMNKVFFVKKGTLKTADKRYNTTDNDYEMTFNNDTEIIPC-DDDTSLP 289
Query: 230 KQQFSFRHISEIESAENNSIVDVIGIVISVNP-SVPILRKNGMETQRRILNLKDTSGRSV 288
F+F I ++S E NS VDV+G+V SV S ++ E ++R L L D V
Sbjct: 290 TINFNFVEIGNLQSVEPNSNVDVLGVVKSVAEVSTITTKQTNKELKKRELELVDRGQVLV 349
Query: 289 ELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEA 348
LTLWG E + M + PV++ K+ +V+DF G+S+ S+QL +NPD +A
Sbjct: 350 RLTLWG----LEAENFNSMNN----PVVAAKNVRVSDFGGRSLSCGSSSQLVLNPDIPQA 401
Query: 349 HELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFIT 408
H+LR W+DS G+NA + S E A G+ + K+ +K++ LG EK D+ T + I
Sbjct: 402 HQLRGWYDSEGRNADFNAYSSEAAGSGSHSTNWKSFGDVKSQNLGTGEKGDYFTAKGTIV 461
Query: 409 FIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTG 467
+++ ++ Y ACP CNKKV Q+ ++C++C +E +R +L A + D +
Sbjct: 462 YLRKENCMYMACP----QADCNKKVVDQANGYYRCEKCQKEFPNFKWRMILSANVADFSD 517
Query: 468 LTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGD 527
WVT FQES E +LG A EL L+ E ++ F ++ VF Y+ L+ K E Y +
Sbjct: 518 NQWVTCFQESAENVLGISADELGKLRSE--NEAAFDKVFDESVFKSYVMTLRAKMETYNE 575
Query: 528 EQRVKITVIRADQV 541
E R+K+ ++A V
Sbjct: 576 ETRLKVICLKATPV 589
>gi|356511809|ref|XP_003524615.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Glycine max]
Length = 620
Score = 302 bits (774), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 170/466 (36%), Positives = 277/466 (59%), Gaps = 21/466 (4%)
Query: 102 NHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSD 161
N P + R+ P+ +LNPYQG W IK VT+KG++R Y NARGDG VF+ +L D D
Sbjct: 162 NSAPAARMAMTRRVRPLVSLNPYQGNWTIKVSVTSKGNMRTYKNARGDGCVFNVELTDED 221
Query: 162 GGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLC 221
G +I+ T FN +F++ +G+VY IS+G+LK A K F ++N++E+ L S V+
Sbjct: 222 GTQIQATMFNNAARKFFDKFVLGKVYYISRGTLKVANKQFKTVQNDYEMTLNENSEVEEV 281
Query: 222 TEEDDSIPKQQFSFRHISEIESAENNS-IVDVIGIVISVNPSVPILRKNGMET-QRRILN 279
E +P+ +F+F I ++ N S +VDVIG+V +V+ ++ I RK+ E+ +R +
Sbjct: 282 VGEASFVPETKFNFVQIDQLGPHVNKSELVDVIGVVKNVSSTMSIRRKSDNESIPKRDIT 341
Query: 280 LKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQL 339
+ D + ++V ++LW + G++L ++VD PV+++KS KV DF G S+ TI + +
Sbjct: 342 IADDTKKTVVVSLWNELATTTGEELLDIVDKS--PVVAIKSLKVGDFQGVSLSTIGRSVV 399
Query: 340 FINPDFAEAHELREWFDSGGKNAATVSI---SREIAAGGAK----NEIHKTVSQIKNEGL 392
+NPD EA LR W+D GK+AA S+ S I+ G + + IH + I N L
Sbjct: 400 LVNPDIPEAKNLRSWYDFEGKDAAMDSVGSGSSPISNNGIRSVYTDRIHLS-DIISNPSL 458
Query: 393 GRSEKPDWVTVRAFITFIKSD-SFCYTACPLMIGDRQCNKKVTQS-GNRWQCDRCNQEID 450
G KP + ++R ITFIK D + Y AC + CNKKVT+S G+ + CD C + +
Sbjct: 459 GDG-KPAFFSLRGHITFIKPDQAMWYRAC------KTCNKKVTESFGSGYWCDGCQKSDE 511
Query: 451 ECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRV 510
+C RY++ A++ D + T+++ F + E+I+GC A +L LK + +D + ++
Sbjct: 512 QCSLRYIMVAKVSDGSAETFISVFNQEAEKIVGCSADDLDNLKLQEGEDNPYQMTLKEAT 571
Query: 511 FNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
+ Q+LFR+ + Y E+R +ITV V++++ESR++L+ +SK
Sbjct: 572 WAQHLFRVSVTPNEYNGEKRQRITVRAVVPVDFAAESRFILEELSK 617
>gi|149676205|dbj|BAF64713.1| 70 kDa subunit of replication protein A [Ipomoea nil]
Length = 604
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 173/494 (35%), Positives = 279/494 (56%), Gaps = 34/494 (6%)
Query: 74 FRAPNAGSIVRSFQPTVQPPYQPPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKAR 133
F A +A IV + PP + R H P+ +LNPYQG W IK R
Sbjct: 129 FVAKSAAQIVHEQNGNIVPPARLAMTRRIH-------------PLVSLNPYQGIWTIKVR 175
Query: 134 VTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGS 193
VT+KG++R Y NARG+G VF+ +L D DG EI+ T FN +FY+ E+G+VY ISKG+
Sbjct: 176 VTSKGNMRFYKNARGEGCVFNVELADQDGTEIQATMFNQAARKFYDKFELGKVYYISKGT 235
Query: 194 LKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENN-SIVDV 252
L+ A K F ++N++E+ L S V+ E +P+ +F+F I E+ S N +VDV
Sbjct: 236 LRVANKQFKTVQNDYEMTLNENSEVEEAINEAAFVPETKFNFVAIDELGSYVNGRELVDV 295
Query: 253 IGIVISVNPSVPILRKNGMET-QRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVG 311
IG+V +V+ ++ I RK+ E +R + + D + ++V ++LW D GQ+L +M D
Sbjct: 296 IGVVQNVSSTMSIRRKSNNEMIPKRDITIADETKKTVVVSLWSDLATNVGQELLDMADKS 355
Query: 312 FFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREI 371
PV++++S KV DF G S+ I + + +NPD EA +LR W+D GK + S+ +
Sbjct: 356 --PVVAIRSVKVGDFQGLSLSAITRSTVLVNPDMPEAKKLRSWYDCEGKETSLTSVGSGL 413
Query: 372 AAGGAKNEIHKTVSQ-------IKNEGLGRSEKPDWVTVRAFITFIKSD-SFCYTACPLM 423
++ AK + S N LG +KP + +++A I+FIK + + Y AC
Sbjct: 414 SS-SAKGVLWSMYSDRVSLLHITSNPNLGE-DKPVFFSIKANISFIKPEQAMWYRAC--- 468
Query: 424 IGDRQCNKKVTQS-GNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEIL 482
+ CNKKVT++ G+ + C+ C + +C RY++ ++ D +G W++ F E E+I+
Sbjct: 469 ---KTCNKKVTEAIGSGYWCEGCQKNDTDCSLRYIVAMRVSDTSGEAWLSVFNEQAEKII 525
Query: 483 GCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVN 542
GC A EL L+ + D + ++ + YLFR+ + + Y +E+R +ITV A V+
Sbjct: 526 GCSADELDRLRSQDGDSSAYQMKLKEATWVPYLFRVSVTPQEYNNEKRQRITVRAAAPVD 585
Query: 543 YSSESRYLLDLISK 556
+++ESRY L+ ++K
Sbjct: 586 FAAESRYFLEEMAK 599
>gi|62751648|ref|NP_001015732.1| replication protein A 70 kDa DNA-binding subunit [Xenopus
(Silurana) tropicalis]
gi|82194954|sp|Q5FW17.1|RFA1_XENTR RecName: Full=Replication protein A 70 kDa DNA-binding subunit;
Short=RP-A p70; AltName: Full=Replication factor A
protein 1; Short=RF-A protein 1
gi|58477644|gb|AAH89665.1| MGC107891 protein [Xenopus (Silurana) tropicalis]
gi|89269807|emb|CAJ81527.1| replication protein A1 [Xenopus (Silurana) tropicalis]
gi|115312915|gb|AAI23969.1| MGC107891 protein [Xenopus (Silurana) tropicalis]
gi|213624489|gb|AAI71175.1| MGC107891 protein [Xenopus (Silurana) tropicalis]
gi|213625713|gb|AAI71177.1| MGC107891 protein [Xenopus (Silurana) tropicalis]
Length = 609
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 168/446 (37%), Positives = 263/446 (58%), Gaps = 18/446 (4%)
Query: 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
++++PIA+LNPYQ +W ++ARVT KG +R ++N+RG+GK+FS +++D + GEIR T FN
Sbjct: 174 SKVVPIASLNPYQSKWTVRARVTNKGQIRTWSNSRGEGKLFSIEMVD-ESGEIRATAFNE 232
Query: 173 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQ 232
D+F+ +IEV +VY SKG+LK A K + +KN++E+ + ++V C + D +P Q
Sbjct: 233 QADKFFSLIEVNKVYYFSKGTLKIANKQYTSVKNDYEMTFNSETSVIPCDDSAD-VPMVQ 291
Query: 233 FSFRHISEIESAENNSIVDVIGIVISVNPSVPI-LRKNGMETQRRILNLKDTSGRSVELT 291
F F I E+ES ++++D+IGI + + +R N E +R +NL D+SG+ V T
Sbjct: 292 FEFVPIGELESKNKDTVLDIIGICKNAEEVTKVTIRSNNREVSKRNINLMDSSGKVVSTT 351
Query: 292 LWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHEL 351
LWG+ +K Q PV+++K +++DF G+S+ + S+ + INPD EA +L
Sbjct: 352 LWGEDADKFDGSRQ--------PVVAIKGARLSDFGGRSLSVLSSSTVMINPDIPEAFKL 403
Query: 352 REWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIK 411
R WFDS G+ SIS G N K++ ++K E LG EK D+ T A I +++
Sbjct: 404 RAWFDSEGQVVEGTSISESRGGTGGGNTNWKSLLEVKTENLGHGEKADYFTSVATIVYLR 463
Query: 412 SDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTW 470
++ Y ACP + CNKKV Q ++C++C++E YR +L A I D W
Sbjct: 464 KENCLYQACP----SQDCNKKVIDQQNGLFRCEKCDKEFPNYKYRLILSANIADFGENQW 519
Query: 471 VTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQR 530
+T FQES E ILG A L LK +++ + E+ ++ F Y FR+++K E Y DE R
Sbjct: 520 ITCFQESAESILGQNATYLGELKE--KNEQAYDEVFQNANFRSYTFRIRVKLETYNDESR 577
Query: 531 VKITVIRADQVNYSSESRYLLDLISK 556
+K T + V++ SR L+ I K
Sbjct: 578 IKATAMDVKPVDHKEYSRRLIMNIRK 603
>gi|47122884|gb|AAH70559.1| LOC397937 protein [Xenopus laevis]
Length = 607
Score = 302 bits (773), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 169/447 (37%), Positives = 264/447 (59%), Gaps = 19/447 (4%)
Query: 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
++++PIA+LNPYQ +W ++ARVT KG +R ++N+RG+GK+FS +++D + GEIR T FN
Sbjct: 171 SKVVPIASLNPYQSKWTVRARVTNKGQIRTWSNSRGEGKLFSIEMVD-ESGEIRATAFNE 229
Query: 173 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQ 232
D+F+ IIEV +VY SKG+LK A K + +KN++E+ + ++V C + D +P Q
Sbjct: 230 QADKFFSIIEVNKVYYFSKGTLKIANKQYTSVKNDYEMTFNSETSVIPCDDSAD-VPMVQ 288
Query: 233 FSFRHISEIESAENNSIVDVIGIVISVNPSVPI-LRKNGMETQRRILNLKDTSGRSVELT 291
F F I E+ES ++++D+IG+ +V + ++ N E +R ++L D+SG+ V T
Sbjct: 289 FEFVSIGELESKNKDTVLDIIGVCKNVEEVTKVTIKSNNREVSKRSIHLMDSSGKVVSTT 348
Query: 292 LWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHEL 351
LWG+ +K Q PV+++K +++DF G+S+ + S+ + INPD EA +L
Sbjct: 349 LWGEDADKFDGSRQ--------PVVAIKGARLSDFGGRSLSVLSSSTVMINPDIPEAFKL 400
Query: 352 REWFDSGGKNAATVSISR-EIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFI 410
R WFDS G+ SIS G N K++ ++KNE LG EK D+ T A I ++
Sbjct: 401 RAWFDSEGQVVEGTSISESRGGGTGGGNTNWKSLLEVKNENLGHGEKADYFTSVATIVYL 460
Query: 411 KSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLT 469
+ ++ Y ACP + CNKKV Q ++C++CN+E YR +L A I D
Sbjct: 461 RKENCLYQACP----SQDCNKKVIDQQNGLFRCEKCNKEFPNFKYRLILSANIADFGENQ 516
Query: 470 WVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQ 529
W+T FQES E ILG A L LK +++ + E+ ++ F Y FR ++K E Y DE
Sbjct: 517 WITCFQESAESILGQNATYLGELKE--KNEQAYDEVFQNANFRSYTFRARVKLETYNDES 574
Query: 530 RVKITVIRADQVNYSSESRYLLDLISK 556
R+K T + V++ SR L+ I K
Sbjct: 575 RIKATAVDVKPVDHKEYSRRLIMNIRK 601
>gi|365767235|gb|EHN08720.1| Rfa1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 621
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 170/471 (36%), Positives = 270/471 (57%), Gaps = 34/471 (7%)
Query: 100 FRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLD 159
F N P + P I I L+PYQ W IKARV+ KG+++ ++N RGDGK+F+ + LD
Sbjct: 171 FANENPNSQKTRP--IFAIEQLSPYQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLD 228
Query: 160 SDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVD 219
+ GEIR T FN +F EI++ G+VY +SK L+PA+ F +L + +E+ L+ + ++
Sbjct: 229 T-SGEIRATAFNDFATKFNEILQEGKVYYVSKAKLQPAKPQFTNLXHPYELNLDRDTVIE 287
Query: 220 LCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILN 279
C +E + +PK F+F + I++ E NS VDV+GI+ ++NP + + G + RR +
Sbjct: 288 ECFDESN-VPKTHFNFIKLDAIQNQEVNSNVDVLGIIQTINPHFELTSRAGKKFDRRDIT 346
Query: 280 LKDTSGRSVELTLWG----DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIP 335
+ D SG S+ + LW DF EG V ++K +V DF GKS+
Sbjct: 347 IVDDSGFSISVGLWNQQALDFNLPEGS------------VAAIKGVRVTDFGGKSLSMGF 394
Query: 336 STQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGG-AKNEIHK------TVSQIK 388
S+ L NP+ EA+ L+ W+DS G+NA +++ +E GG + + K T+++ +
Sbjct: 395 SSTLIPNPEIPEAYALKGWYDSKGRNANFITLKQEPGMGGQSAASLTKFIAQRITIARAQ 454
Query: 389 NEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQ 447
E LGRSEK D+ +V+A I+F+K D+F Y AC + CNKKV Q W+C++C+
Sbjct: 455 AENLGRSEKGDFFSVKAAISFLKVDNFAYPAC----SNENCNKKVLEQPDGTWRCEKCDT 510
Query: 448 EIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIR 507
++RY+L I D+T W+T F + +++LG A L LK E D F +I +
Sbjct: 511 NNARPNWRYILTISIIDETNQLWLTLFDDQAKQLLGVDANTLMSLKEE--DPNEFTKITQ 568
Query: 508 SRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKSF 558
S N+Y FR++ +E+ Y D+ R++ TV +NY +E+ YL D +SK+
Sbjct: 569 SIQMNEYDFRIRAREDTYNDQSRIRYTVANLHSLNYRAEADYLADELSKAL 619
>gi|190406650|gb|EDV09917.1| RF-A [Saccharomyces cerevisiae RM11-1a]
Length = 621
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 170/471 (36%), Positives = 270/471 (57%), Gaps = 34/471 (7%)
Query: 100 FRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLD 159
F N P + P I I L+PYQ W IKARV+ KG+++ ++N RGDGK+F+ + LD
Sbjct: 171 FANENPNSQKTRP--IFAIEQLSPYQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLD 228
Query: 160 SDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVD 219
+ GEIR T FN +F EI++ G+VY +SK L+PA+ F +L + +E+ L+ + ++
Sbjct: 229 T-SGEIRATAFNDFATKFNEILQEGKVYYVSKAKLQPAKPQFTNLTHPYELNLDRDTVIE 287
Query: 220 LCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILN 279
C +E + +PK F+F + I++ E NS VDV+GI+ ++NP + + G + RR +
Sbjct: 288 ECFDESN-VPKTHFNFIKLDAIQNQEVNSNVDVLGIIQTINPHFELTSRAGKKFDRRDIT 346
Query: 280 LKDTSGRSVELTLWG----DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIP 335
+ D SG S+ + LW DF EG V ++K +V DF GKS+
Sbjct: 347 IVDDSGFSISVGLWNQQALDFNLPEGS------------VAAIKGVRVTDFGGKSLSMGF 394
Query: 336 STQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGG-AKNEIHK------TVSQIK 388
S+ L NP+ EA+ L+ W+DS G+NA +++ +E GG + + K T+++ +
Sbjct: 395 SSTLIPNPEIPEAYALKGWYDSKGRNANFITLKQEPGMGGQSAASLTKFIAQRITITRAQ 454
Query: 389 NEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQ 447
E LGRSEK D+ +V+A I+F+K D+F Y AC + CNKKV Q W+C++C+
Sbjct: 455 AENLGRSEKGDFFSVKAAISFLKVDNFAYPAC----SNENCNKKVLEQPDGTWRCEKCDT 510
Query: 448 EIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIR 507
++RY+L I D+T W+T F + +++LG A L LK E D F +I +
Sbjct: 511 NNARPNWRYILTISIIDETNQLWLTLFDDQAKQLLGVDANTLMSLKEE--DPNEFTKITQ 568
Query: 508 SRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKSF 558
S N+Y FR++ +E+ Y D+ R++ TV +NY +E+ YL D +SK+
Sbjct: 569 SIQMNEYDFRIRAREDTYNDQSRIRYTVANLHSLNYRAEADYLADELSKAL 619
>gi|207347969|gb|EDZ73967.1| YAR007Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256270812|gb|EEU05961.1| Rfa1p [Saccharomyces cerevisiae JAY291]
gi|259144715|emb|CAY77656.1| Rfa1p [Saccharomyces cerevisiae EC1118]
gi|323310280|gb|EGA63470.1| Rfa1p [Saccharomyces cerevisiae FostersO]
gi|323334809|gb|EGA76181.1| Rfa1p [Saccharomyces cerevisiae AWRI796]
gi|323349907|gb|EGA84118.1| Rfa1p [Saccharomyces cerevisiae Lalvin QA23]
gi|323356339|gb|EGA88141.1| Rfa1p [Saccharomyces cerevisiae VL3]
gi|349576254|dbj|GAA21426.1| K7_Rfa1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 621
Score = 301 bits (772), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 170/471 (36%), Positives = 270/471 (57%), Gaps = 34/471 (7%)
Query: 100 FRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLD 159
F N P + P I I L+PYQ W IKARV+ KG+++ ++N RGDGK+F+ + LD
Sbjct: 171 FANENPNSQKTRP--IFAIEQLSPYQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLD 228
Query: 160 SDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVD 219
+ GEIR T FN +F EI++ G+VY +SK L+PA+ F +L + +E+ L+ + ++
Sbjct: 229 T-SGEIRATAFNDFATKFNEILQEGKVYYVSKAKLQPAKPQFTNLTHPYELNLDRDTVIE 287
Query: 220 LCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILN 279
C +E + +PK F+F + I++ E NS VDV+GI+ ++NP + + G + RR +
Sbjct: 288 ECFDESN-VPKTHFNFIKLDAIQNQEVNSNVDVLGIIQTINPHFELTSRAGKKFDRRDIT 346
Query: 280 LKDTSGRSVELTLWG----DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIP 335
+ D SG S+ + LW DF EG V ++K +V DF GKS+
Sbjct: 347 IVDDSGFSISVGLWNQQALDFNLPEGS------------VAAIKGVRVTDFGGKSLSMGF 394
Query: 336 STQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGG-AKNEIHK------TVSQIK 388
S+ L NP+ EA+ L+ W+DS G+NA +++ +E GG + + K T+++ +
Sbjct: 395 SSTLIPNPEIPEAYALKGWYDSKGRNANFITLKQEPGMGGQSAASLTKFIAQRITIARAQ 454
Query: 389 NEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQ 447
E LGRSEK D+ +V+A I+F+K D+F Y AC + CNKKV Q W+C++C+
Sbjct: 455 AENLGRSEKGDFFSVKAAISFLKVDNFAYPAC----SNENCNKKVLEQPDGTWRCEKCDT 510
Query: 448 EIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIR 507
++RY+L I D+T W+T F + +++LG A L LK E D F +I +
Sbjct: 511 NNARPNWRYILTISIIDETNQLWLTLFDDQAKQLLGVDANTLMSLKEE--DPNEFTKITQ 568
Query: 508 SRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKSF 558
S N+Y FR++ +E+ Y D+ R++ TV +NY +E+ YL D +SK+
Sbjct: 569 SIQMNEYDFRIRAREDTYNDQSRIRYTVANLHSLNYRAEADYLADELSKAL 619
>gi|147901418|ref|NP_001081585.1| replication protein A 70 kDa DNA-binding subunit [Xenopus laevis]
gi|400975|sp|Q01588.1|RFA1_XENLA RecName: Full=Replication protein A 70 kDa DNA-binding subunit;
Short=RP-A p70; AltName: Full=Replication factor A
protein 1; Short=RF-A protein 1; AltName:
Full=Single-stranded DNA-binding protein
gi|65066|emb|CAA47665.1| replication protein A (RPA) [Xenopus laevis]
Length = 609
Score = 301 bits (772), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 169/447 (37%), Positives = 264/447 (59%), Gaps = 19/447 (4%)
Query: 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
++++PIA+LNPYQ +W ++ARVT KG +R ++N+RG+GK+FS +++D + GEIR T FN
Sbjct: 173 SKVVPIASLNPYQSKWTVRARVTNKGQIRTWSNSRGEGKLFSIEMVD-ESGEIRATAFNE 231
Query: 173 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQ 232
D+F+ IIEV +VY SKG+LK A K + +KN++E+ + ++V C + D +P Q
Sbjct: 232 QADKFFSIIEVNKVYYFSKGTLKIANKQYTSVKNDYEMTFNSETSVIPCDDSAD-VPMVQ 290
Query: 233 FSFRHISEIESAENNSIVDVIGIVISVNPSVPI-LRKNGMETQRRILNLKDTSGRSVELT 291
F F I E+ES ++++D+IG+ +V + ++ N E +R ++L D+SG+ V T
Sbjct: 291 FEFVSIGELESKNKDTVLDIIGVCKNVEEVTKVTIKSNNREVSKRSIHLMDSSGKVVSTT 350
Query: 292 LWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHEL 351
LWG+ +K Q PV+++K +++DF G+S+ + S+ + INPD EA +L
Sbjct: 351 LWGEDADKFDGSRQ--------PVVAIKGARLSDFGGRSLSVLSSSTVMINPDIPEAFKL 402
Query: 352 REWFDSGGKNAATVSISR-EIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFI 410
R WFDS G+ SIS G N K++ ++KNE LG EK D+ T A I ++
Sbjct: 403 RAWFDSEGQVVEGTSISESRGGGTGGGNTNWKSLLEVKNENLGHGEKADYFTSVATIVYL 462
Query: 411 KSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLT 469
+ ++ Y ACP + CNKKV Q ++C++CN+E YR +L A I D
Sbjct: 463 RKENCLYQACP----SQDCNKKVIDQQNGLFRCEKCNKEFPNFKYRLILSANIADFGENQ 518
Query: 470 WVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQ 529
W+T FQES E ILG A L LK +++ + E+ ++ F Y FR ++K E Y DE
Sbjct: 519 WITCFQESAESILGQNATYLGELKE--KNEQAYDEVFQNANFRSYTFRARVKLETYNDES 576
Query: 530 RVKITVIRADQVNYSSESRYLLDLISK 556
R+K T + V++ SR L+ I K
Sbjct: 577 RIKATAVDVKPVDHKEYSRRLIMNIRK 603
>gi|6319321|ref|NP_009404.1| Rfa1p [Saccharomyces cerevisiae S288c]
gi|132473|sp|P22336.1|RFA1_YEAST RecName: Full=Replication factor A protein 1; Short=RF-A protein 1;
AltName: Full=DNA-binding protein BUF2; AltName:
Full=Replication protein A 69 kDa DNA-binding subunit;
AltName: Full=Single-stranded DNA-binding protein
gi|4312|emb|CAA42420.1| replication factor-A protein 1 [Saccharomyces cerevisiae]
gi|172466|gb|AAA34994.1| single stranded DNA binding protein [Saccharomyces cerevisiae]
gi|349752|gb|AAC04960.1| Rfa1p: Subunit of replication factor RF-A [Saccharomyces
cerevisiae]
gi|410541|gb|AAB27889.1| BUF2 [Saccharomyces cerevisiae]
gi|151941394|gb|EDN59765.1| RF-A [Saccharomyces cerevisiae YJM789]
gi|285810203|tpg|DAA06989.1| TPA: Rfa1p [Saccharomyces cerevisiae S288c]
gi|392301278|gb|EIW12366.1| Rfa1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 621
Score = 301 bits (772), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 170/471 (36%), Positives = 270/471 (57%), Gaps = 34/471 (7%)
Query: 100 FRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLD 159
F N P + P I I L+PYQ W IKARV+ KG+++ ++N RGDGK+F+ + LD
Sbjct: 171 FANENPNSQKTRP--IFAIEQLSPYQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLD 228
Query: 160 SDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVD 219
+ GEIR T FN +F EI++ G+VY +SK L+PA+ F +L + +E+ L+ + ++
Sbjct: 229 T-SGEIRATAFNDFATKFNEILQEGKVYYVSKAKLQPAKPQFTNLTHPYELNLDRDTVIE 287
Query: 220 LCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILN 279
C +E + +PK F+F + I++ E NS VDV+GI+ ++NP + + G + RR +
Sbjct: 288 ECFDESN-VPKTHFNFIKLDAIQNQEVNSNVDVLGIIQTINPHFELTSRAGKKFDRRDIT 346
Query: 280 LKDTSGRSVELTLWG----DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIP 335
+ D SG S+ + LW DF EG V ++K +V DF GKS+
Sbjct: 347 IVDDSGFSISVGLWNQQALDFNLPEGS------------VAAIKGVRVTDFGGKSLSMGF 394
Query: 336 STQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGG-AKNEIHK------TVSQIK 388
S+ L NP+ EA+ L+ W+DS G+NA +++ +E GG + + K T+++ +
Sbjct: 395 SSTLIPNPEIPEAYALKGWYDSKGRNANFITLKQEPGMGGQSAASLTKFIAQRITIARAQ 454
Query: 389 NEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQ 447
E LGRSEK D+ +V+A I+F+K D+F Y AC + CNKKV Q W+C++C+
Sbjct: 455 AENLGRSEKGDFFSVKAAISFLKVDNFAYPAC----SNENCNKKVLEQPDGTWRCEKCDT 510
Query: 448 EIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIR 507
++RY+L I D+T W+T F + +++LG A L LK E D F +I +
Sbjct: 511 NNARPNWRYILTISIIDETNQLWLTLFDDQAKQLLGVDANTLMSLKEE--DPNEFTKITQ 568
Query: 508 SRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKSF 558
S N+Y FR++ +E+ Y D+ R++ TV +NY +E+ YL D +SK+
Sbjct: 569 SIQMNEYDFRIRAREDTYNDQSRIRYTVANLHSLNYRAEADYLADELSKAL 619
>gi|254585755|ref|XP_002498445.1| ZYRO0G10428p [Zygosaccharomyces rouxii]
gi|238941339|emb|CAR29512.1| ZYRO0G10428p [Zygosaccharomyces rouxii]
Length = 615
Score = 301 bits (771), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 167/485 (34%), Positives = 276/485 (56%), Gaps = 29/485 (5%)
Query: 85 SFQPTVQP-PYQPPPNFRNHGPILKNEAPAR-IIPIAALNPYQGRWAIKARVTAKGDLRR 142
S +P P P Q PN ++ P+ +R I I L+PYQ W IKARV+ KGD++
Sbjct: 147 SGEPNNTPKPQQAKPNTGSNFPMGSGSQKSRPIFAIEQLSPYQNIWTIKARVSYKGDIKT 206
Query: 143 YNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFN 202
++N RGDGK+ + + LD+ GEIR T FN +F EI++ G+VY +SK L+PA+ F+
Sbjct: 207 WHNQRGDGKLLNLNFLDT-SGEIRGTAFNDNATKFNEILQEGKVYFLSKARLQPAKPQFS 265
Query: 203 HLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPS 262
+L + +E+ L+ + V+ C + D +PK FSF ++ I++ E NS VDV+GI+ +VNP
Sbjct: 266 NLPHPYELMLDRDTVVEECLDASD-VPKTHFSFIKLNTIQNQEANSTVDVLGIIQTVNPH 324
Query: 263 VPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGF--FPVLSVKS 320
++ + G RR + + D S S+ + LW Q+ VD V+++KS
Sbjct: 325 FELISRAGKRFDRRDITIVDDSEYSIAVGLWN----------QQAVDFNLPEGSVVAIKS 374
Query: 321 GKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEI 380
+V DF GKS+ ++ + NP+ EA+ L+ WFD+ G+N S+ E+ + +
Sbjct: 375 VRVTDFGGKSLSMGFTSTMIPNPEIPEAYSLKGWFDNTGRNLQYHSLKEEVNETNSTTNL 434
Query: 381 HK------TVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT 434
K T++ + + LGR+EK D+ +++A ++F+K D+F Y AC + CNKKV
Sbjct: 435 VKYISERTTIATAQAQNLGRNEKGDFFSIKAAVSFLKVDNFAYPACL----NENCNKKVI 490
Query: 435 -QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLK 493
Q W+C++C+ D+RYLL + D+TG W+T F + +++L A EL +LK
Sbjct: 491 EQPDQTWRCEKCDTNHPSPDWRYLLTISVLDETGQLWLTLFNDQAKQLLKVEASELVLLK 550
Query: 494 YELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDL 553
D F +I +S NQY FR++ +E+ Y ++ R++ TV +NY +E+ +L +
Sbjct: 551 ES--DPTAFSKITQSLQMNQYSFRIRAREDNYNNQSRIRYTVSNLHNINYKAEADFLAEQ 608
Query: 554 ISKSF 558
+++S
Sbjct: 609 LTQSL 613
>gi|326435434|gb|EGD81004.1| hypothetical protein PTSG_10947 [Salpingoeca sp. ATCC 50818]
Length = 601
Score = 301 bits (770), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 175/474 (36%), Positives = 264/474 (55%), Gaps = 32/474 (6%)
Query: 93 PYQPPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKV 152
PY+ PP + P + + PI +L+PY RW I+ARV +K ++R +NN RG G++
Sbjct: 146 PYKSPP--KPAMPSMAAASSGAYSPIMSLHPYLHRWTIRARVASKSNVRTWNNQRGSGRL 203
Query: 153 FSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFL 212
FS DL+D D GEIR T FN V D + + EVG+ Y+I G +KPA K FN L NE+E+
Sbjct: 204 FSVDLID-DSGEIRATGFNDVCDSLHPVFEVGKCYVIQGGKIKPANKRFNQLNNEYEMQF 262
Query: 213 EATSTVDLCTEEDDSIPKQQFSFRHISEIE----SAENNSIVDVIGIVISVNPSVPILRK 268
E+ + V L D+ IP+Q+F F+ E+E S E+N DV+ + S+N + I+ K
Sbjct: 263 ESDTRVTLDMSADNVIPQQKFDFKSFRELENTPVSRESNVFADVLAVCHSINDADTIITK 322
Query: 269 -NGMETQRRILNLKDTSGRSVELTLWG----DFCNKEGQKLQEMVDVGFFPVLSVKSGKV 323
G E +R + L D G S+ TLWG DF G VG VL++K+ +V
Sbjct: 323 ATGRELTKRDITLLDRDGLSMTCTLWGQDAEDFEKNGGV-------VG--AVLAIKAARV 373
Query: 324 NDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKT 383
+D++G+S+ S+ ++INPD EAH L+ W+D G ATV N
Sbjct: 374 SDYNGRSLSVSQSSTMYINPDNDEAHSLKGWYDMEG---ATVEAKPLTVRNAGGNTTRIL 430
Query: 384 VSQIKNEGLGRSE-KPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSG-NRWQ 441
+SQIK++ +G + KP++ A +T+IK D+ Y ACP CNKKV ++G ++
Sbjct: 431 LSQIKDDQIGMIDGKPEYFMAVATVTYIKKDNCMYRACP----SDSCNKKVIENGPEEYR 486
Query: 442 CDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVR 501
C++CN+ +R + I D TG TWVTAFQES E++L ++EL L D+
Sbjct: 487 CEKCNKSYPNFKWRLMTSMSIADATGQTWVTAFQESAEKLLDSTSQELGHLME--NDEAA 544
Query: 502 FGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLIS 555
F + I F + F+ + K + Y D+ RV+++V+ A VNY E+ +L+ I+
Sbjct: 545 FSKKIADAQFRTWRFKCRAKADTYQDDTRVRVSVVDASPVNYVDEAAHLIQQIN 598
>gi|255715099|ref|XP_002553831.1| KLTH0E08118p [Lachancea thermotolerans]
gi|238935213|emb|CAR23394.1| KLTH0E08118p [Lachancea thermotolerans CBS 6340]
Length = 624
Score = 301 bits (770), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 161/451 (35%), Positives = 269/451 (59%), Gaps = 25/451 (5%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
I I L+PYQ W IKARV+ KGD++ ++N RG+GK+F+ +LLD + GEIR T F+ V
Sbjct: 190 IFAIEQLSPYQNMWTIKARVSFKGDIKTWSNQRGEGKLFNVNLLD-NSGEIRATTFSENV 248
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
D+FY +++ G+VY +SK ++P++ F++L + +E+ L+ + V+ C ++ D +PK FS
Sbjct: 249 DKFYNLLQEGKVYYVSKARIQPSKPQFSNLAHPYELQLDRDTVVEECFDDVD-VPKMNFS 307
Query: 235 FRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWG 294
F ++ +ES E NSIVDVIGI+ +VNP I K G RR + L D SG SV + LWG
Sbjct: 308 FVKLNTMESQEANSIVDVIGIIRTVNPPFEITSKAGKRFDRRDIILVDDSGYSVNVGLWG 367
Query: 295 DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREW 354
Q L+ + G V+++K G+V DF+GK + ++ + +P+ EA+ ++ W
Sbjct: 368 Q------QALEFNLPEG--SVVAIKGGRVTDFNGKGLSMGFNSTMHPSPEVPEAYAIKGW 419
Query: 355 FDSGGKNAATVSISREIAAGGAK------NEIHKTVSQIKNEGLGRSEKPDWVTVRAFIT 408
+DS G+NA S+ +E AGG N I ++++ + + LG SE+ D+ +++A ++
Sbjct: 420 YDSVGRNAQFHSLKQEPGAGGGNAARFIANRI--SIAKAQADNLGMSERGDYFSIKAAVS 477
Query: 409 FIKSDSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQTG 467
+++ D+ Y AC + CNKKV + + W+C++C+ E +RY+L + D+TG
Sbjct: 478 YLRVDNLAYPAC----ANENCNKKVIEEPDGTWRCEKCDANHPEPQFRYMLTVSVLDETG 533
Query: 468 LTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGD 527
W+T F E E++LG A M+KY+ D +F I + NQY FR++ + + Y D
Sbjct: 534 QIWLTLFNEQAEQLLGVDANS--MVKYKESDPSKFARITQKIQMNQYDFRVRARADNYND 591
Query: 528 EQRVKITVIRADQVNYSSESRYLLDLISKSF 558
E R++ T + + +E+ +L + + K F
Sbjct: 592 ETRIRYTAANVHNLRFGAEAEFLAEELGKVF 622
>gi|356564937|ref|XP_003550703.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Glycine max]
Length = 600
Score = 300 bits (769), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 178/474 (37%), Positives = 278/474 (58%), Gaps = 30/474 (6%)
Query: 100 FRNHGPILKNEAPA-------RIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKV 152
R HG N APA R+ P+ +LNPYQG W IK VT+KG++R Y NARGDG V
Sbjct: 137 LREHG----NSAPAARMAMTRRVRPLVSLNPYQGNWTIKVSVTSKGNMRNYKNARGDGCV 192
Query: 153 FSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFL 212
F+ +L D DG +I+ T FN +FY+ +GRVY ISKG+LK A K F ++N++E+ L
Sbjct: 193 FNVELTDEDGTQIQATMFNNAARKFYDKFILGRVYYISKGTLKVANKQFKTVQNDYEMTL 252
Query: 213 EATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNS-IVDVIGIVISVNPSVPILRKNGM 271
S V+ E +P+ +F+F I ++ N S +VDVIGIV +V+ ++ I RK+
Sbjct: 253 NENSEVEEVAGEASFVPETKFNFVQIDQLGPHVNKSELVDVIGIVKNVSSTMTIRRKSDN 312
Query: 272 ET-QRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKS 330
E+ +R + + D + ++V ++LW + GQ+L ++VD PV+++KS KV DF G S
Sbjct: 313 ESIPKRDITIADDTKKTVVVSLWNELATTTGQELLDIVDKS--PVVAIKSLKVGDFQGVS 370
Query: 331 IGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSI---SREIAAGGAKNEIHKTV--S 385
+ TI + + +NP EA LR W+D GK+AA S+ S + G ++ V S
Sbjct: 371 LSTIGKSVVLVNPVIPEAKNLRSWYDFEGKDAAMDSVGSGSSPTSNNGIRSVYTDRVLLS 430
Query: 386 QI-KNEGLGRSEKPDWVTVRAFITFIKSD-SFCYTACPLMIGDRQCNKKVTQS-GNRWQC 442
I N LG KP + ++R I+FIK D + Y AC + CNKKVT+S G+ + C
Sbjct: 431 DITSNPSLGDG-KPAFFSLRGHISFIKPDQAMWYRAC------KTCNKKVTESVGSGYLC 483
Query: 443 DRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRF 502
D C + ++C RY++ A++ D + T+++AF + E+I+GC A +L LK + + +
Sbjct: 484 DGCQKSDEQCSLRYIMVAKVSDASAETYISAFNQEAEKIIGCSADDLDNLKSQEGEVNPY 543
Query: 503 GEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
++ + Q+LFR+ + Y E+R +ITV V++++ESR+LL+ +SK
Sbjct: 544 QMTLKEATWAQHLFRVSVTPNEYNGEKRQRITVRAVVPVDFAAESRFLLEDLSK 597
>gi|365762222|gb|EHN03823.1| Rfa1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 661
Score = 300 bits (769), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 171/471 (36%), Positives = 269/471 (57%), Gaps = 34/471 (7%)
Query: 100 FRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLD 159
F N G + P I I L+PYQ W IKARV+ KG+++ ++N RGDGK+F+ + LD
Sbjct: 211 FVNEGSNSQKSRP--IFAIEQLSPYQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLD 268
Query: 160 SDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVD 219
+ GEIR T FN +F EI++ G+VY +SK L+PA+ F +L + +E+ L+ + V+
Sbjct: 269 T-SGEIRATAFNDFATKFNEILQEGKVYYVSKAKLQPAKPQFTNLTHPYELNLDRDTVVE 327
Query: 220 LCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILN 279
C +E + +PK F+F + I++ E NS VDV+GI+ ++NP + + G + RR +
Sbjct: 328 ECFDESN-VPKTHFNFIKLDAIQNQEVNSNVDVLGIIQTINPQFELTSRAGKKFDRRDIT 386
Query: 280 LKDTSGRSVELTLWG----DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIP 335
+ D SG S+ + LW DF EG V ++K +V DF GKS+
Sbjct: 387 IVDDSGFSISVGLWNQQALDFNLPEG------------SVAAIKGVRVTDFGGKSLSMGF 434
Query: 336 STQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGG-AKNEIHK------TVSQIK 388
S+ L NP+ EA+ L+ W+DS G+NA ++ +E GG + + K T+++ +
Sbjct: 435 SSTLIPNPEIPEAYALKGWYDSKGRNANFTTLKQEPGVGGQSAASLTKFIAQRITIARAQ 494
Query: 389 NEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQ 447
E LGRSEK D+ +V+A I+F+K D+F Y AC + CNKKV Q W+C++C+
Sbjct: 495 AENLGRSEKGDFFSVKAAISFLKVDNFAYPAC----SNENCNKKVLEQPDGTWRCEKCDT 550
Query: 448 EIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIR 507
++RY+L I D+T W+T F + +++LG A L LK E D F +I +
Sbjct: 551 NNASPNWRYILTISIIDETNQLWLTLFDDQAKQLLGVDANTLMSLKEE--DPNEFTKITQ 608
Query: 508 SRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKSF 558
S N+Y FR++ +E+ Y D+ R++ TV +NY +E+ YL D +SK+
Sbjct: 609 SIQMNEYDFRIRAREDTYNDQSRIRYTVANLHSLNYKAEADYLADELSKAL 659
>gi|291405375|ref|XP_002719090.1| PREDICTED: replication protein A1 [Oryctolagus cuniculus]
Length = 613
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 167/442 (37%), Positives = 263/442 (59%), Gaps = 19/442 (4%)
Query: 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
++++PIA+L PYQ +W I ARVT K +R ++N+RG+GK+FS +L+D + GEIR T FN
Sbjct: 179 SKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVD-ESGEIRATAFNE 237
Query: 173 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQ 232
VD+F+ +IEV +VY SKG+LK A K F +KN++E+ ++V C E+ +P Q
Sbjct: 238 QVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFVNETSVMPC-EDGHHLPTVQ 296
Query: 233 FSFRHISEIESAENNSIVDVIGIVISVNPSVPI-LRKNGMETQRRILNLKDTSGRSVELT 291
F+F I +E+ +S+VD+IGI S + I ++ N E +R + L DTSG+ V T
Sbjct: 297 FAFTGIDALENKPKDSLVDIIGICKSYEDATKITVKSNNREVAKRNIYLMDTSGKVVTAT 356
Query: 292 LWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHEL 351
LWG+ ++ D PVL++K +V+DF G+S+ + S+ + +NPD EA++L
Sbjct: 357 LWGEDADR--------FDGSRQPVLAIKGARVSDFGGRSLSVLSSSTVIVNPDIPEAYKL 408
Query: 352 REWFDSGGKNAATVSISREIAAG-GAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFI 410
R WFDS G+ VSIS + G G N KT+ ++K+E LG+ +K D+ + A + ++
Sbjct: 409 RGWFDSEGQALDGVSISDLKSGGMGGSNTNWKTLYEVKSENLGQGDKADYFSSVATVVYL 468
Query: 411 KSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLT 469
+ ++ Y ACP + CNKKV Q ++C++C+ E YR +L I D
Sbjct: 469 RKENCMYQACPT----QDCNKKVIDQQNGLYRCEKCDSEFPNFKYRMILSVNIADFQENQ 524
Query: 470 WVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQ 529
WVT FQES E ILG Y+ + + +++ F E+ ++ F + FR+++K E Y DE
Sbjct: 525 WVTCFQESAEAILG--QNTAYLGELKEKNEQAFEEVFQNANFRSFTFRIRVKLETYNDES 582
Query: 530 RVKITVIRADQVNYSSESRYLL 551
R+K TV+ V+Y +R L+
Sbjct: 583 RIKATVMDVKPVDYREHARRLI 604
>gi|392580530|gb|EIW73657.1| hypothetical protein TREMEDRAFT_67478 [Tremella mesenterica DSM
1558]
Length = 596
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 162/446 (36%), Positives = 258/446 (57%), Gaps = 22/446 (4%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
+ PI L+PYQ +W IKARVT K DL+ ++N RG+GK+FS +D D GEIR T FN V
Sbjct: 162 LYPIEGLSPYQNKWTIKARVTQKSDLKHWSNQRGEGKLFSVTFMD-DTGEIRATGFNETV 220
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
D+FY++++ G+VY +S+ + A+K FN++ NE+EI E ++ + C +D+S+P+ +++
Sbjct: 221 DQFYDLLQEGKVYFVSRARINIAKKQFNNVNNEYEITFENSTEIQPC--DDESVPQIKYN 278
Query: 235 FRHISEIESAENNSIVDVIGIVISVNPSVPILRK-NGMETQRRILNLKDTSGRSVELTLW 293
F+ + ++ + + + DVIG+V V + K +R + L D SG+SV LTLW
Sbjct: 279 FKSVGDLGDLQKDELCDVIGVVKEVGELGSVTSKATNKPFAKRDIQLVDQSGQSVRLTLW 338
Query: 294 GDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELRE 353
G K E PV++ K KV DF G+S+ S + +NPD EAH LR
Sbjct: 339 G--------KQAETFQADDEPVIAFKGVKVGDFGGRSLSMFSSATMALNPDIPEAHSLRG 390
Query: 354 WFDSGGKNA-----ATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFIT 408
W+D+ G++ + ++S +EI KT+ Q K+E LG S+K D+ T +A ++
Sbjct: 391 WYDAEGRSKHFQAYTSATVSNSDGQITKPSEI-KTIGQAKDEQLGMSDKTDYFTTQATVS 449
Query: 409 FIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGL 468
FIKS++F Y AC G CNKKVT G+ W+C++C++ +RY+L + D G
Sbjct: 450 FIKSETFSYPACANPDG---CNKKVTDEGSGWRCEKCDKTWPSPIHRYILSMNVMDYAGS 506
Query: 469 TWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDE 528
W+TAF E E+I+G A EL ++ + +DV F + Y F++ K++ + D+
Sbjct: 507 FWITAFNEVAEQIMGISANELMEMR-DNGNDVEFQRSFQKASGRTYNFQMMAKQDSFNDQ 565
Query: 529 QRVKITVIRADQVNYSSESRYLLDLI 554
RV+ RA +Y ++S +L+ LI
Sbjct: 566 PRVRYQCRRAALPDYPADSAHLVSLI 591
>gi|156843819|ref|XP_001644975.1| hypothetical protein Kpol_1025p37 [Vanderwaltozyma polyspora DSM
70294]
gi|156115629|gb|EDO17117.1| hypothetical protein Kpol_1025p37 [Vanderwaltozyma polyspora DSM
70294]
Length = 618
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 156/454 (34%), Positives = 269/454 (59%), Gaps = 30/454 (6%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
I I L+PYQ W IKARV+ KG+++ ++N +G+GK+FS + LD+ GEIR T FN +
Sbjct: 183 IFAIEQLSPYQNVWTIKARVSYKGEIKTWHNQKGEGKLFSVNFLDT-SGEIRATAFNDMA 241
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
+F E+++ G+VY +SK L+PA+ F++L + +E+ L+ + ++ C +E + +PK FS
Sbjct: 242 TKFNEVLQEGKVYYVSKARLQPAKPQFSNLSHPYELSLDRETVIEECQDESN-VPKTHFS 300
Query: 235 FRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWG 294
F + I++ E +S VDV+G++ +VNP + K G + RR + + D SG S+ + LW
Sbjct: 301 FIKLDAIQNQEASSTVDVLGVIQTVNPHFELTSKAGKKFDRRDITIVDDSGFSISVGLWN 360
Query: 295 ----DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHE 350
DF EG ++++K +V+DF GKS+ ++ L NP+ EA+
Sbjct: 361 QQALDFNLPEG------------SIVAIKGVRVSDFGGKSLSMGFNSTLIPNPEIPEAYS 408
Query: 351 LREWFDSGGKNAATVSISREIAAGGAKNEIHK------TVSQIKNEGLGRSEKPDWVTVR 404
L+ W+D+ GKN S+++E+ + + + K T+++ +++ LG+SEK D+ +V+
Sbjct: 409 LKGWYDTSGKNENFSSLNQEVGGAPSSDNLMKFISQRTTIAKAQSDNLGKSEKGDFFSVK 468
Query: 405 AFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQD 464
A ++F+K D+F Y AC + CNKKV + W+C+RC++ ++ ++RY+L I D
Sbjct: 469 ASVSFLKVDNFAYPACT----NADCNKKVIEHNGSWRCERCDKTSEQPEWRYMLTISIMD 524
Query: 465 QTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEEL 524
+TG W+T F + +++LG A L LK D F + +S N Y FR++ +E+
Sbjct: 525 ETGQMWLTLFNDQAKQLLGIDANSLIELKDS--DPDAFSKKTQSIQMNPYDFRIRAREDN 582
Query: 525 YGDEQRVKITVIRADQVNYSSESRYLLDLISKSF 558
Y D+ R++ TV ++NY ES +L +SK+
Sbjct: 583 YNDQTRIRYTVSNLHKLNYKVESDFLASELSKAL 616
>gi|380025907|ref|XP_003696705.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Apis florea]
Length = 601
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 175/481 (36%), Positives = 272/481 (56%), Gaps = 26/481 (5%)
Query: 82 IVRSFQPTVQPPYQPPPNF----RNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAK 137
IV+S Q + QP Q N NH + PI AL+PYQ RW IKARV +K
Sbjct: 130 IVQSAQ-SAQPVPQQQSNITNLKSNHNMQQSSTNNISTTPIVALSPYQNRWVIKARVVSK 188
Query: 138 GDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPA 197
++R ++N+RG+GK+FS DL+D + GEIR T F D+FY+++E+G+VY IS+ +LKPA
Sbjct: 189 SNIRTWSNSRGEGKLFSMDLID-ESGEIRCTAFRNECDKFYDMLEIGKVYYISRATLKPA 247
Query: 198 QKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVI 257
K FN+LKN++E+ L S + C + D IP QF F I++I E N I+D++GIV
Sbjct: 248 NKQFNNLKNDYEMTLIGDSEIIPCHDSGDDIPSLQFDFVSINDINKKEQNDIMDILGIVK 307
Query: 258 -SVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVL 316
S + + R +G E ++R +NL D S V LTLWG E D PVL
Sbjct: 308 NSGDLQILTSRNSGRELKKRDVNLVDESNTMVTLTLWGSQA--------EEFDGSSNPVL 359
Query: 317 SVKSGKVNDFS-GKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGG 375
+VK ++ +F+ GK++ T+ ST L I+PD AH LR WF++ G+N S+S+ +
Sbjct: 360 AVKGARITEFNGGKNLSTLSSTVLQIDPDLPAAHRLRGWFNTMGRNEEATSLSKPFGSTT 419
Query: 376 AKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKK-VT 434
+E+ T + K+ LG + D TV+A + I+ ++ Y ACP C KK V
Sbjct: 420 GVSELWITFQEAKDMELGY-KNSDIYTVKATLNMIRMENAIYKACP----SENCKKKLVD 474
Query: 435 QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKY 494
Q+ + ++C++C++E YR L + D T W+TAF + E+IL A+EL LK
Sbjct: 475 QANDMYRCEKCDKEYPNYRYRLLANISLADWTDNQWITAFNDEAEKILSSTAQELGELK- 533
Query: 495 ELQDDV-RFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDL 553
++D+ + E F ++F++++K E++GDE R++ T + ++Y + +L+
Sbjct: 534 --ENDIDAYSEKFSEATFKSFIFKIRVKVEVFGDENRLRATCLGVSPMDYKLYNNHLITQ 591
Query: 554 I 554
I
Sbjct: 592 I 592
>gi|323306166|gb|EGA59898.1| Rfa1p [Saccharomyces cerevisiae FostersB]
Length = 455
Score = 299 bits (765), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 169/473 (35%), Positives = 271/473 (57%), Gaps = 34/473 (7%)
Query: 100 FRNHGPI--LKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDL 157
R + P+ L + I I L+PYQ W IKARV+ KG+++ ++N RGDGK+F+ +
Sbjct: 1 MRENSPMKTLTRQKTRPIFAIEQLSPYQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNF 60
Query: 158 LDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATST 217
LD+ GEIR T FN +F EI++ G+VY +SK L+PA+ F +L + +E+ L+ +
Sbjct: 61 LDT-SGEIRATAFNDFATKFNEILQEGKVYYVSKAKLQPAKPQFTNLTHPYELNLDRDTV 119
Query: 218 VDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRI 277
++ C +E + +PK F+F + I++ E NS VDV+GI+ ++NP + + G + RR
Sbjct: 120 IEECFDESN-VPKTHFNFIKLDAIQNQEVNSNVDVLGIIQTINPHFELTSRAGKKFDRRD 178
Query: 278 LNLKDTSGRSVELTLWG----DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGT 333
+ + D SG S+ + LW DF EG V ++K +V DF GKS+
Sbjct: 179 ITIVDDSGFSISVGLWNQQALDFNLPEGS------------VAAIKGVRVTDFGGKSLSM 226
Query: 334 IPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGG-AKNEIHK------TVSQ 386
S+ L NP+ EA+ L+ W+DS G+NA +++ +E GG + + K T+++
Sbjct: 227 GFSSTLIPNPEIPEAYALKGWYDSKGRNANFITLKQEPGMGGQSAASLTKFIAQRITIAR 286
Query: 387 IKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRC 445
+ E LGRSEK D+ +V+A I+F+K D+F Y AC + CNKKV Q W+C++C
Sbjct: 287 AQAENLGRSEKGDFFSVKAAISFLKVDNFAYPAC----SNENCNKKVLEQPDGTWRCEKC 342
Query: 446 NQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEI 505
+ ++RY+L I D+T W+T F + +++LG A L LK E D F +I
Sbjct: 343 DTNNARPNWRYILTISIIDETNQLWLTLFDDQAKQLLGVDANTLMSLKEE--DPNEFTKI 400
Query: 506 IRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKSF 558
+S N+Y FR++ +E+ Y D+ R++ TV +NY +E+ YL D +SK+
Sbjct: 401 TQSIQMNEYDFRIRAREDTYNDQSRIRYTVANLHSLNYRAEADYLADELSKAL 453
>gi|401837707|gb|EJT41601.1| RFA1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 621
Score = 298 bits (764), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 170/471 (36%), Positives = 268/471 (56%), Gaps = 34/471 (7%)
Query: 100 FRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLD 159
F N G + P I I L+PYQ W IKARV+ KG+++ ++N RGDGK+F+ + LD
Sbjct: 171 FVNEGSNSQKSRP--IFAIEQLSPYQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLD 228
Query: 160 SDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVD 219
+ GEIR T FN +F EI++ G+VY +SK L+PA+ F +L + +E+ L+ + V+
Sbjct: 229 T-SGEIRATAFNDFATKFNEILQEGKVYYVSKAKLQPAKPQFTNLTHPYELNLDRDTVVE 287
Query: 220 LCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILN 279
C +E + +PK F+F + I++ E NS VDV+GI+ ++NP + + G + RR +
Sbjct: 288 ECFDESN-VPKTHFNFIKLDAIQNQEVNSNVDVLGIIQTINPQFELTSRAGKKFDRRDIT 346
Query: 280 LKDTSGRSVELTLWG----DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIP 335
+ D SG S+ + LW DF EG V ++K +V DF GKS+
Sbjct: 347 IVDDSGFSISVGLWNQQALDFNLPEG------------SVAAIKGVRVTDFGGKSLSMGF 394
Query: 336 STQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGG-AKNEIHK------TVSQIK 388
S+ L NP+ EA+ L+ W+DS G+NA ++ +E GG + + K T+++ +
Sbjct: 395 SSTLIPNPEIPEAYALKGWYDSKGRNANFTTLKQEPGVGGQSAASLTKFIAQRITIARAQ 454
Query: 389 NEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQ 447
E LGRSEK D+ + +A I+F+K D+F Y AC + CNKKV Q W+C++C+
Sbjct: 455 AENLGRSEKGDFFSAKAAISFLKVDNFAYPAC----SNENCNKKVLEQPDGTWRCEKCDT 510
Query: 448 EIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIR 507
++RY+L I D+T W+T F + +++LG A L LK E D F +I +
Sbjct: 511 NNASPNWRYILTISIIDETNQLWLTLFDDQAKQLLGVDANTLMSLKEE--DPNEFTKITQ 568
Query: 508 SRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKSF 558
S N+Y FR++ +E+ Y D+ R++ TV +NY +E+ YL D +SK+
Sbjct: 569 SIQMNEYDFRIRAREDTYNDQSRIRYTVANLHSLNYKAEADYLADELSKAL 619
>gi|149053388|gb|EDM05205.1| replication protein A1 [Rattus norvegicus]
Length = 583
Score = 298 bits (764), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 171/449 (38%), Positives = 267/449 (59%), Gaps = 19/449 (4%)
Query: 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
++++PIA+L PYQ +W I ARVT K +R ++N+RG+GK+FS +L+D + GEIR T FN
Sbjct: 151 SKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVD-ESGEIRATAFNE 209
Query: 173 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQ 232
VD+F+ +IEV +VY SKG+LK A K F+ +KN++E+ ++V C E+ +P Q
Sbjct: 210 QVDKFFPLIEVNKVYYFSKGTLKIANKQFSAVKNDYEMTFNNETSVLPC-EDGHHLPTVQ 268
Query: 233 FSFRHISEIESAENNSIVDVIGIVISVNPSVPI-LRKNGMETQRRILNLKDTSGRSVELT 291
F F I ++ES +S+VD+IGI S + I ++ N E +R + L D SG+ V T
Sbjct: 269 FDFTGIGDLESKSKDSLVDIIGICKSYEDATKITVKSNNREVAKRNICLMDMSGKVVTAT 328
Query: 292 LWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHEL 351
LWG+ +K Q PV+++K +V+DF G+S+ + S+ + +NPD EA++L
Sbjct: 329 LWGEDADKFDGSRQ--------PVMAIKGARVSDFGGRSLSVLSSSTVLVNPDIPEAYKL 380
Query: 352 REWFDSGGKNAATVSISREIAAG-GAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFI 410
R WFDS G+ VSIS + G G N KT+ + K+E LG+ +K D+ + A + F+
Sbjct: 381 RGWFDSEGQALDGVSISDLRSGGTGGSNTNWKTLYEAKSENLGQGDKADYFSTVATVVFL 440
Query: 411 KSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLT 469
+ ++ Y ACP + CNKKV Q ++C++C++E YR +L I D
Sbjct: 441 RKENCMYQACPT----QDCNKKVIDQQNGLYRCEKCDREFPNFKYRMILSVNIADFQENQ 496
Query: 470 WVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQ 529
WVT FQES E ILG +Y+ + + +++ F E+ ++ F + FR+++K E Y DE
Sbjct: 497 WVTCFQESAEAILG--QNTVYLGELKEKNEQAFEEVFQNANFRSFTFRIRVKLETYNDES 554
Query: 530 RVKITVIRADQVNYSSESRYLLDLISKSF 558
R+K TVI V+Y S+ L+ I K+
Sbjct: 555 RIKATVIDVKPVDYRDYSKRLIMNIRKNI 583
>gi|443926858|gb|ELU45414.1| damaged DNA binding protein [Rhizoctonia solani AG-1 IA]
Length = 1077
Score = 297 bits (761), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 166/451 (36%), Positives = 261/451 (57%), Gaps = 25/451 (5%)
Query: 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
A + PI AL+PY +W I+ARVT K D+R ++N RG+GK+FS +L+D + GEIR T FN
Sbjct: 639 APLHPIEALSPYSNKWTIRARVTQKSDIRTWSNQRGEGKLFSVNLMD-ETGEIRATGFNE 697
Query: 173 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQ 232
VVD Y +E G+VY SK ++ A+K F++L N++EI LE + C E++ ++PK Q
Sbjct: 698 VVDNLYSKLEEGKVYWFSKARVQLAKKQFSNLSNDYEIALERQTEAIPC-EDESAVPKVQ 756
Query: 233 FSFRHISEIESAENNSIVDVIGIVISVNPSVPI-LRKNGMETQRRILNLKDTSGRSVELT 291
F+F +S+++ E +++VDV+G+V V P I ++ G +R + + D SG SV +T
Sbjct: 757 FNFTELSQLDGVEKDAMVDVLGVVTEVKPIETINVKSTGKTVSKRDVTVVDKSGSSVRMT 816
Query: 292 LWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHEL 351
+WG K+ + Q + PV++ K KV DF G+++ + S+ + +PDF EAH L
Sbjct: 817 IWG----KQAETFQAENN----PVIAFKGVKVGDFGGRTLSLVSSSTMTFHPDFPEAHAL 868
Query: 352 REWFDSGG-----KNAATVSISREIAAGGAKNEIH-KTVSQIKNEGLGRSE--KPDWVTV 403
+ W+ S G K+ +T + G N KT+ +K E LG E K D+ T
Sbjct: 869 QGWYSSEGHSQTFKSQSTGGMGAGGGGVGTINRREMKTLQAVKEENLGMGEEGKTDFFTT 928
Query: 404 RAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQ 463
RA I IKSD+ Y AC G C+KKVT+ + W+C++C + + +YRY++ +
Sbjct: 929 RATIIHIKSDNIMYPAC----GSDNCSKKVTEVHDGWRCEKCEKTFPKPNYRYIMSLSVA 984
Query: 464 DQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEE 523
D T W+ F + GE ILG A EL+ LK E ++ + I ++F+ + ++
Sbjct: 985 DYTQTAWLQVFNDPGELILGMTASELHELKEE--NEASYTTAIEKATSQTWMFQCRAQQS 1042
Query: 524 LYGDEQRVKITVIRADQVNYSSESRYLLDLI 554
Y D+ RV+ V RA +++Y+ ESR LL+ I
Sbjct: 1043 TYQDQSRVRYGVNRAHKIDYAQESRALLEAI 1073
>gi|401626961|gb|EJS44874.1| rfa1p [Saccharomyces arboricola H-6]
Length = 621
Score = 297 bits (761), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 165/454 (36%), Positives = 263/454 (57%), Gaps = 32/454 (7%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
I I L+PYQ W IKARV+ KG+++ ++N RGDGK+F+ + LD+ GEIR T FN
Sbjct: 184 IFAIEQLSPYQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDT-SGEIRATAFNDFA 242
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
+F EI++ G+VY +SK L+PA+ F +L + +E+ L+ + V+ C +E + +PK F+
Sbjct: 243 TKFNEILQEGKVYYVSKAKLQPAKPQFTNLTHPYELNLDRDTVVEECFDESN-VPKTHFN 301
Query: 235 FRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWG 294
F + I++ E NS VDV+G++ ++NP + + G + RR + + D SG S+ + LW
Sbjct: 302 FIKLDAIQNQEVNSNVDVLGVIQTINPHFELTSRAGKKFDRRDITIVDDSGFSISVGLWN 361
Query: 295 ----DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHE 350
DF EG V ++K +V DF GKS+ S+ L NP+ EA+
Sbjct: 362 QQALDFNLPEG------------SVAAIKGVRVTDFGGKSLSMGFSSTLIPNPEIPEAYA 409
Query: 351 LREWFDSGGKNAATVSISREIAAGG-AKNEIHK------TVSQIKNEGLGRSEKPDWVTV 403
L+ W+DS G+NA ++ +E GG + + K T+++ + E LGRSEK D+ +V
Sbjct: 410 LKGWYDSKGRNANFTTLKQEPGMGGQSAAGLTKFIAQRITIARAQAENLGRSEKGDFFSV 469
Query: 404 RAFITFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQI 462
+A ++F+K D+F Y AC + CNKKV Q W+C++C+ ++RY+L I
Sbjct: 470 KAAVSFLKVDNFAYPAC----SNENCNKKVLEQPDGTWRCEKCDTNNASPNWRYILTISI 525
Query: 463 QDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKE 522
D+T W+T F + +++LG A L LK E D F +I +S N+Y FR++ +E
Sbjct: 526 IDETNQLWLTLFDDQAKQLLGVDANALMSLKEE--DPNEFTKITQSIQMNEYDFRIRARE 583
Query: 523 ELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
+ Y D+ R++ TV +NY +E+ YL D +SK
Sbjct: 584 DTYNDQSRIRYTVANLHSLNYKAEADYLADELSK 617
>gi|427789109|gb|JAA60006.1| Putative replication factor a 1 rfa1 replication factor a 1 rfa1
[Rhipicephalus pulchellus]
Length = 600
Score = 297 bits (760), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 178/478 (37%), Positives = 278/478 (58%), Gaps = 26/478 (5%)
Query: 91 QPPYQPPPNFRNHGPILKNEA-PAR-----IIPIAALNPYQGRWAIKARVTAKGDLRRYN 144
+PP Q + P N A PA ++PIA+L PYQ RW I+ARVT K +R ++
Sbjct: 132 KPPLQQNSAAPSAAPSFGNRAYPASTSDVVVVPIASLTPYQNRWTIRARVTNKSGIRNWS 191
Query: 145 NARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQK--NFN 202
N++G+GK+FS DLLD + GEIR T FNA DRFY++IEV +VY IS+ +K +K +F+
Sbjct: 192 NSKGEGKLFSMDLLD-ESGEIRATAFNAECDRFYDVIEVNKVYYISRAVIKNVKKGYSFS 250
Query: 203 HLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPS 262
+KN++E+ L + +T+ C + +IP QF+F IS ++ +S++DVIG+ S +
Sbjct: 251 SIKNDFEMSLISETTITPCDDVTPNIPTLQFNFVPISRLQEISKDSVIDVIGVCKSASDV 310
Query: 263 VPILRKN-GMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSG 321
+ R+ E ++R ++L D SG V LTLWGD K D PV++VK
Sbjct: 311 QTVTRRTTSQELKKRDVSLVDRSGTEVSLTLWGDQAEK--------FDGSDNPVVAVKGA 362
Query: 322 KVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIH 381
+V+DFSG S+ I S+ L +NPD E+H L W+ G T S+S + N
Sbjct: 363 RVSDFSGVSLSLISSSMLQVNPDIPESHALMGWYSREGTLLQTHSLSTQRGGPMGGNANW 422
Query: 382 KTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT--QSGNR 439
K+++Q K EGLG+ +KPD+ +V+A ++ I+ ++ Y ACP CNKKV Q+G
Sbjct: 423 KSIAQAKAEGLGQGDKPDYYSVKACVSIIRKENCLYKACP----SENCNKKVVDLQTG-Y 477
Query: 440 WQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKEL-YMLKYELQD 498
++C++C QE E +R L+ A + D + WVT F + E ++G A++L M ++
Sbjct: 478 YRCEKCAQETMEFKWRLLVSANLTDFSDGQWVTCFGKEAETLIGASAEDLGEMYSNSSKE 537
Query: 499 DVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
D R+ +I+ F ++FRL+ K E+Y DE R+K +V+ V+Y ++ LL I++
Sbjct: 538 DSRYEDILNDVPFKPFIFRLRTKMEVYNDESRLKTSVMSVSPVDYIEYTKKLLKDIAE 595
>gi|302799733|ref|XP_002981625.1| hypothetical protein SELMODRAFT_114787 [Selaginella moellendorffii]
gi|300150791|gb|EFJ17440.1| hypothetical protein SELMODRAFT_114787 [Selaginella moellendorffii]
Length = 566
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 166/467 (35%), Positives = 269/467 (57%), Gaps = 27/467 (5%)
Query: 103 HG---PILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLD 159
HG P + R+ P+ +L PYQG W IK RVT+KG LR Y NARG+G VF+ +L D
Sbjct: 101 HGRAAPAARMGVSRRVYPLVSLTPYQGSWTIKVRVTSKGPLRTYRNARGEGSVFNVELTD 160
Query: 160 SDGGEIRVTCFNAVVDRFYEIIEVGR-------VYLISKGSLKPAQKNFNHLKNEWEIFL 212
DG +I+ T F ++FY + E+G+ VY +S G+L+ A + F+ +KN++E+ L
Sbjct: 161 EDGTQIQATMFKEAAEKFYPMFELGKATSFLYQVYYVSNGNLRMANRQFSAVKNDYEMTL 220
Query: 213 EATSTVDLCTEEDDS---IPKQQFSFRHISEIESAENN-SIVDVIGIVISVNPSVPILRK 268
A+S V+ TE D IP +++F I ++ + N + D IGIV SV+ ++ + RK
Sbjct: 221 NASSGVEEVTEPDGKPGVIPLVKYNFVKIEDLAAYVNKRELFDAIGIVQSVSSTMSVRRK 280
Query: 269 -NGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDF- 326
+ E +R + L D S ++V ++LW ++G KL EM+ PV+ ++S + NDF
Sbjct: 281 VDNTEFAKREIVLVDQSQKTVAVSLWSSLAVEDGAKLLEMLPDA--PVVVIRSVRANDFQ 338
Query: 327 SGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAA-GGAKNEIHKTVS 385
+G S+ T P++ ++INPD EA ELR W+D GK+A S+ ++ G+ N+ +S
Sbjct: 339 AGVSLSTSPNSMVWINPDIPEARELRSWYDESGKDATLTSVGAGLSQRAGSANDNRADIS 398
Query: 386 QIKNEGLGRSEKPDWVTVRAFITFIKSD-SFCYTACPLMIGDRQCNKKVTQSGNRWQCDR 444
I +G K + TVRA I++IK D + YTAC CN+KV++ +R+ C+
Sbjct: 399 DITAPSVGEG-KAAYFTVRACISYIKPDQTMWYTACS------TCNRKVSEDSSRFWCEA 451
Query: 445 CNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGE 504
C + D RY++ A++ D +G WV+ F + E+ILG A EL +K + D ++
Sbjct: 452 CQRHFDTASRRYIMLAKLTDHSGDAWVSFFNDQAEQILGVSADELATIKSQDDDQRQYSS 511
Query: 505 IIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLL 551
+ V++ Y+FR+ + + Y E+R +IT+ + +++SESR LL
Sbjct: 512 QLSKVVWSSYVFRVSVAQTEYLGEKRQRITIRAVNDTDWASESRLLL 558
>gi|91094635|ref|XP_970093.1| PREDICTED: similar to replication protein A 70 kDa DNA-binding
subunit [Tribolium castaneum]
gi|270016445|gb|EFA12891.1| hypothetical protein TcasGA2_TC004405 [Tribolium castaneum]
Length = 591
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 168/471 (35%), Positives = 269/471 (57%), Gaps = 22/471 (4%)
Query: 89 TVQPPYQPPPNFRNHGPILKNEAPARII-PIAALNPYQGRWAIKARVTAKGDLRRYNNAR 147
T +PP + P + + ++ + R++ I AL PY +W IKARVT K D+R ++N+R
Sbjct: 133 TSEPPVKQPKS-EQSTSLNQSISETRVLNQINALTPYHNKWVIKARVTNKSDMRTWSNSR 191
Query: 148 GDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNE 207
G+GK+FSFDL+D D GEIR T F + D+++ ++V +VY ISK LK A K FN LKNE
Sbjct: 192 GEGKLFSFDLMD-DSGEIRCTAFRDMADKYFNYLQVDKVYYISKCQLKAANKQFNTLKNE 250
Query: 208 WEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILR 267
+E+ + + ++ C +D +P+ +++F IS + E ++VDVIGI +
Sbjct: 251 YEMTIGNETIIEECLTDDGHVPQVKYNFVPISALAEKEVGNLVDVIGICKEASEVQTFTS 310
Query: 268 KN-GMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDF 326
K+ E ++R + L D S S+ LTLWG + D PV+ +K KV +F
Sbjct: 311 KSTNRELRKREITLVDQSKTSIALTLWGSQADS--------FDATNNPVVVIKGAKVGEF 362
Query: 327 -SGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVS 385
GK++ T+ S+Q+ +NPD E H ++ W+DS G+ A ++S + G+ ++
Sbjct: 363 GGGKNLSTLMSSQIKLNPDIPECHRIKGWYDSEGQYDAMTNLSERVGGVGSFQTAWMSLK 422
Query: 386 QIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDR 444
+++++GLG SEK D+ V+A I ++S++ Y ACP CNKKV N ++C++
Sbjct: 423 EVQDKGLGHSEKGDYFQVKATILLVRSENALYKACPT----DDCNKKVVDLENGMYRCEK 478
Query: 445 CNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFG- 503
C +E YR L+ I D +G WV+ F E+ILG A+E+ + ++DD G
Sbjct: 479 CCREFPNFKYRLLVSMNIGDFSGNQWVSVFSSEAEKILGKTAQEIGLT---MRDDSEAGT 535
Query: 504 EIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLI 554
I ++ F Q++F+ + K E Y DEQR+KI V++ D VNY + YL + I
Sbjct: 536 AIFQAANFKQFIFKCRAKMENYNDEQRLKIVVVKVDPVNYEEYNGYLCEQI 586
>gi|110756775|ref|XP_001121722.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit isoform
1 [Apis mellifera]
Length = 597
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 172/483 (35%), Positives = 273/483 (56%), Gaps = 30/483 (6%)
Query: 76 APNAGSIVRSFQPTVQPPYQPPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVT 135
A +A S+V Q ++P NH + PI AL+PYQ RW IKARV
Sbjct: 132 AQSAQSVVPQQQTNLKP---------NHNMQQSSTNNISTTPIVALSPYQNRWVIKARVV 182
Query: 136 AKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLK 195
+K ++R ++N+RG+GK+FS DL+D + GEIR T F D+FY+++E+G+VY IS+ +LK
Sbjct: 183 SKSNIRTWSNSRGEGKLFSMDLID-ESGEIRCTAFRNECDKFYDMLEIGKVYYISRATLK 241
Query: 196 PAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGI 255
PA K FN+LKN++E+ L S + C + D IP QF F I++I E N I++++GI
Sbjct: 242 PANKQFNNLKNDYEMTLIGDSEIIPCHDSGDDIPSLQFDFVSINDINKKEQNDIMNILGI 301
Query: 256 V-ISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFP 314
V S + + R +G E ++R ++L D S +V LTLWG E D P
Sbjct: 302 VKYSGDLQILTSRNSGRELRKRDVSLVDESNTTVTLTLWGSQA--------EEFDGSSNP 353
Query: 315 VLSVKSGKVNDFS-GKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAA 373
VL+VK ++ +F+ GK++ T+ ST L I+PD AH LR WF++ G+N S+S+ +
Sbjct: 354 VLAVKGARITEFNGGKNLSTLSSTVLQIDPDLPAAHRLRGWFNTMGRNEEATSLSKPFGS 413
Query: 374 GGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKK- 432
+E+ T + K+ LG + D TV+A + I+ ++ Y ACP C KK
Sbjct: 414 TTGVSELWITFQEAKDMELGY-KNSDIYTVKATLNMIRMENAIYKACP----SENCKKKL 468
Query: 433 VTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYML 492
V Q+ + ++C++C++E YR L + D T WVTAF + E+IL A+EL L
Sbjct: 469 VDQANDMYRCEKCDKEYPNYRYRLLANISLADWTDNQWVTAFNDEAEKILSSTAQELGEL 528
Query: 493 KYELQDDV-RFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLL 551
K ++D+ + E F ++F++++K E++GDE R++ T + ++Y + +L+
Sbjct: 529 K---ENDIDAYSEKFSEATFKSFIFKIRVKVEVFGDENRLRATCLGVSPMDYKLYNNHLI 585
Query: 552 DLI 554
I
Sbjct: 586 TQI 588
>gi|164657638|ref|XP_001729945.1| hypothetical protein MGL_2931 [Malassezia globosa CBS 7966]
gi|159103839|gb|EDP42731.1| hypothetical protein MGL_2931 [Malassezia globosa CBS 7966]
Length = 567
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 165/460 (35%), Positives = 265/460 (57%), Gaps = 24/460 (5%)
Query: 106 ILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEI 165
+ K+ + + PI AL+PYQ +W IKARVT K D+R ++NARGDGK+FS +LLD + GEI
Sbjct: 115 VAKSSSGMPVYPIDALSPYQNKWTIKARVTLKTDIRHWSNARGDGKLFSVNLLD-ESGEI 173
Query: 166 RVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEED 225
R T FN VDRFY +++ +VY ISK + A+K F+ L NE+EI LE+ S ++ C E
Sbjct: 174 RATAFNDAVDRFYPVLQENKVYFISKAKVTIAKKQFSTLPNEYEISLESGSEIEECAEAG 233
Query: 226 DSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGME-TQRRILNLKDTS 284
D +P+ +++F I ++ + E N DVI I+ IL K ++R L L D+S
Sbjct: 234 D-VPEVKYNFVSIDQLTTVEPNQTTDVITILDGYTDVSEILSKATQRPIKKRDLTLIDSS 292
Query: 285 GRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPD 344
G SV +TLWG + + ++ + PV++ K KV+DF G+S+ S+ + INPD
Sbjct: 293 GMSVRMTLWG----SQAENFEKTIAGEEKPVIAFKGVKVSDFGGRSLSMFSSSTMSINPD 348
Query: 345 FAEAHELREWFDSGGKNA------ATV--SISREIAAGGAKNEIHKTVSQIKNEGLGRS- 395
E+H LR W+D+ G +A AT+ + + + G + +T++Q+K+E LG S
Sbjct: 349 IPESHGLRGWYDNEGNSAHIRSYGATLDGTTASALNQGALRANEFRTLAQVKDESLGTSF 408
Query: 396 EKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYR 455
E+ D+ RA + +I+ ++ YTACP + CNKKV + + W+C++C++ R
Sbjct: 409 ERADYFNARAVVLYIRPNTLYYTACP----GQDCNKKVIEESDGWRCEKCDRSYPAPVRR 464
Query: 456 YLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYL 515
Y+ A I D +G W++ F E G +LG A EL ++ E + + + + +RV + +
Sbjct: 465 YIFSANIADYSGQIWISGFNEVGVALLGMTADELDSIRNENEGEFK---AVLTRVIGRVM 521
Query: 516 -FRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLI 554
F + K+E + D RV+ TV + +N++ L+D I
Sbjct: 522 DFHCRAKQETFNDTNRVRYTVTQIQPLNFAKAGHELVDKI 561
>gi|195108849|ref|XP_001999005.1| GI24276 [Drosophila mojavensis]
gi|193915599|gb|EDW14466.1| GI24276 [Drosophila mojavensis]
Length = 610
Score = 296 bits (757), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 172/440 (39%), Positives = 250/440 (56%), Gaps = 22/440 (5%)
Query: 117 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDR 176
PIA+L+PYQ +W IKARVT+K +R ++NARG+GK+FS DL+D + GEIR T F D+
Sbjct: 175 PIASLSPYQNKWVIKARVTSKTAIRTWSNARGEGKLFSMDLMD-ESGEIRATAFKEQCDK 233
Query: 177 FYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDD-SIPKQQFSF 235
FY++IEVG VY SK LKPA K ++ LKN++E+ + V LC E+D+ IP+ +F
Sbjct: 234 FYDLIEVGNVYFFSKCQLKPANKQYSQLKNDYEMTFTGETMVQLCDEDDNGGIPEIKFDL 293
Query: 236 RHISEIESAENNSIVDVIGIVISVNPSVPIL-RKNGMETQRRILNLKDTSGRSVELTLWG 294
IS++ + EN VD IGI V R E ++R L L D S +V LTLWG
Sbjct: 294 IPISQVSNMENKEAVDTIGICKEVGELQTFTSRTTNKEFKKRELTLVDMSNAAVTLTLWG 353
Query: 295 DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFS-GKSIGTIPSTQLFINPDFAEAHELRE 353
D +Q PV+ VK ++N+F+ GKS+ + L INPD EAH+LR
Sbjct: 354 DEAVNFDGHVQ--------PVILVKGSRINEFNGGKSLSMGGGSILKINPDIPEAHKLRG 405
Query: 354 WFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSD 413
WFD+GG + + +S GG+ + T+ + LG +KPD+ +A + +K +
Sbjct: 406 WFDNGGGDNISTMVSAR-TGGGSFSTDWVTLKDARIRNLGSGDKPDYFQCKAVVHIVKQE 464
Query: 414 SFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVT 472
+ Y ACP CNKKV GN +++C+RCN YR L+ I D T WVT
Sbjct: 465 NAFYKACP----QTDCNKKVVDEGNGQYRCERCNAAFPNFKYRLLINMSIGDWTSNRWVT 520
Query: 473 AFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRV-FNQYLFRLKIKEELYGDEQRV 531
F E GE++L A+E + L++D E + S + F+ Y+F+L+ K E+YGD R
Sbjct: 521 CFSEVGEQLLKHSAQE---VGDALENDPATAEKMFSDINFSSYIFKLRCKNEMYGDMTRN 577
Query: 532 KITVIRADQVNYSSESRYLL 551
K+TV +NY +++L+
Sbjct: 578 KLTVQSMSPINYREYNKHLI 597
>gi|302759481|ref|XP_002963163.1| hypothetical protein SELMODRAFT_141493 [Selaginella moellendorffii]
gi|300168431|gb|EFJ35034.1| hypothetical protein SELMODRAFT_141493 [Selaginella moellendorffii]
Length = 566
Score = 295 bits (755), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 166/467 (35%), Positives = 268/467 (57%), Gaps = 27/467 (5%)
Query: 103 HG---PILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLD 159
HG P + R+ P+ +L PYQG W IK RVT+KG LR Y NARG+G VF+ +L D
Sbjct: 101 HGRAAPAARMGVSRRVYPLVSLTPYQGSWTIKVRVTSKGPLRTYRNARGEGSVFNVELTD 160
Query: 160 SDGGEIRVTCFNAVVDRFYEIIEVGR-------VYLISKGSLKPAQKNFNHLKNEWEIFL 212
DG +I+ T F ++FY + E+G+ VY +S G+L+ A + F+ +KN++E+ L
Sbjct: 161 EDGTQIQATMFKEAAEKFYPMFELGKATSFLYQVYYVSNGNLRMANRRFSAVKNDYEMTL 220
Query: 213 EATSTVDLCTEEDDS---IPKQQFSFRHISEIESAENN-SIVDVIGIVISVNPSVPILRK 268
A+S V+ TE D IP +++F I ++ + N + D IGIV SV+ ++ + RK
Sbjct: 221 NASSGVEEVTEPDGKPGVIPLVKYNFVKIEDLAAYVNKRELFDAIGIVQSVSSTMSVRRK 280
Query: 269 -NGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDF- 326
+ E +R + L D S ++V ++LW ++G KL EM+ PV+ ++S + NDF
Sbjct: 281 VDNTEFAKREIVLVDQSQKTVAVSLWSSLAVEDGAKLLEMLPDA--PVVVIRSVRANDFQ 338
Query: 327 SGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAA-GGAKNEIHKTVS 385
+G S+ T P++ ++INPD EA ELR W+D GK+A S+ ++ G N+ +S
Sbjct: 339 AGVSLSTSPNSMVWINPDIPEARELRSWYDESGKDATLTSVGAGLSQRAGPTNDNRADIS 398
Query: 386 QIKNEGLGRSEKPDWVTVRAFITFIKSD-SFCYTACPLMIGDRQCNKKVTQSGNRWQCDR 444
I +G K + TVRA I++IK D + YTAC CN+KV++ +R+ C+
Sbjct: 399 DITAPSVGEG-KAAYFTVRACISYIKPDQTMWYTACS------TCNRKVSEDSSRFWCEA 451
Query: 445 CNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGE 504
C + D RY++ A++ D +G WV+ F + E+ILG A EL +K + D ++
Sbjct: 452 CQRHFDTASRRYIMLAKLTDHSGDAWVSFFNDQAEQILGVSADELATIKSQDDDQRQYSS 511
Query: 505 IIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLL 551
+ V++ Y+FR+ + + Y E+R +IT+ + +++SESR LL
Sbjct: 512 QLSKVVWSSYVFRVSVAQTEYLGEKRQRITIRAVNDTDWASESRLLL 558
>gi|149724785|ref|XP_001504393.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit [Equus
caballus]
Length = 603
Score = 295 bits (754), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 179/503 (35%), Positives = 286/503 (56%), Gaps = 26/503 (5%)
Query: 62 NPGSFSTPNSGTFRAPNAGSIVRSFQPTVQPPYQPPPNF-RNHGPILKNEA---PARIIP 117
+P S ++P + + N S + S TV Y F + G L N + A+++P
Sbjct: 117 SPVSAASPPTSKPQPQNGSSGMGS---TVSKAYGASKTFGKAGGASLVNSSGGTQAKVVP 173
Query: 118 IAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRF 177
IA+L PYQ +W I ARVT K +R ++N+RG+GK+FS +L+D + GEIR T FN D+F
Sbjct: 174 IASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVD-ESGEIRATAFNEQADKF 232
Query: 178 YEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRH 237
+ +++V +VY SKG+LK A K F +KN++E+ ++V C E+D +P QF F
Sbjct: 233 FPLLDVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPC-EDDHHLPTVQFDFTG 291
Query: 238 ISEIESAENNSIVDVIGIVISVNPSVPI-LRKNGMETQRRILNLKDTSGRSVELTLWGDF 296
I E+E+ +S+VD+IGI S + I ++ N E +R + L DTSG+ V TLWG+
Sbjct: 292 IGELENKPKDSLVDIIGICKSYEDATKITVKSNNREVSKRNIYLMDTSGKVVTTTLWGED 351
Query: 297 CNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFD 356
++ Q PV+++K +V+DF G+S+ + S+ + +NPD +EA++LR WFD
Sbjct: 352 ADRFDGSRQ--------PVMAIKGARVSDFGGRSLSVLSSSTVIMNPDISEAYKLRGWFD 403
Query: 357 SGGKNAATVSISR-EIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSF 415
S G+ VSIS + G N KT+ ++K+E LG+ +K D+ + A + +++ ++
Sbjct: 404 SEGQALDGVSISDLKGGGTGGSNTNWKTLYEVKSENLGQGDKADYFSSVATVVYLRKENC 463
Query: 416 CYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAF 474
Y ACP + CNKKV Q ++C++C+ E YR +L I D WVT F
Sbjct: 464 MYQACP----SQDCNKKVIDQQNGLYRCEKCDSEFPSFKYRMILSVNIADFQENQWVTCF 519
Query: 475 QESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKIT 534
QES E ILG Y+ + + +++ F E+ ++ F + FR+++K E + DE R+K T
Sbjct: 520 QESAEAILG--QNTAYLGELKEKNEQAFEEVFQNANFRSFTFRIRVKLETFNDESRIKAT 577
Query: 535 VIRADQVNYSSESRYLLDLISKS 557
V+ V+Y R L+ I K+
Sbjct: 578 VMDVKPVDYREYGRRLIMNIRKN 600
>gi|358389545|gb|EHK27137.1| hypothetical protein TRIVIDRAFT_85768 [Trichoderma virens Gv29-8]
Length = 600
Score = 295 bits (754), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 169/458 (36%), Positives = 265/458 (57%), Gaps = 24/458 (5%)
Query: 105 PILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGE 164
PI A A I PI AL+P+ +W IKARVT K D++ ++ G+GK+FS +LLD + GE
Sbjct: 157 PISATHAGANIYPIEALSPFSSKWTIKARVTFKSDIKTWHKPTGEGKLFSVNLLD-ESGE 215
Query: 165 IRVTCFNAVVDRFYEIIEVGRVYLISKGS-LKPAQKNFNHLKNEWEIFLEATSTVDLCTE 223
I+ T FN D FY++++ G VY IS + A+K F++L N++E+ E + ++ E
Sbjct: 216 IKATGFNDQCDAFYDLLQEGSVYYISSPCRVSLAKKQFSNLPNDYELAFERETVIEK-AE 274
Query: 224 EDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPIL-RKNGMETQRRILNLKD 282
+ ++P+ +F+F I E++S E +S VDVIG++ V I +K+G Q+R L L D
Sbjct: 275 DQTNVPQLRFNFCTIQELQSVEKDSTVDVIGVLKEVAEVSEITSKKDGRPFQKRELTLVD 334
Query: 283 TSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFIN 342
+G SV +T+WG K D V++ K KV+DF GKS+ + S + ++
Sbjct: 335 DTGYSVRVTIWG--------KTASAFDANPESVVAFKGTKVSDFGGKSLSLLSSGTMTVD 386
Query: 343 PDFAEAHELREWFDSGGKN---AATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPD 399
PD +A+ L+ W+DS G+ A +++ A G K EI KT+SQ+K+E LG ++
Sbjct: 387 PDIPDAYRLKGWYDSAGRTNTFATHQNLAGVAGATGRKEEI-KTISQVKDENLGVDDQA- 444
Query: 400 WVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLL 458
+ T++A I F+K D+FCY AC ++ CNKKVT WQC++CN D+ DYRY++
Sbjct: 445 YYTIKATIVFVKQDNFCYPAC----SNQGCNKKVTAMPDGTWQCEKCNVSHDKPDYRYIM 500
Query: 459 QAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRL 518
Q + D T W++ F ++G ++G A EL LK DD +F + + +FR
Sbjct: 501 QLNVADHTSHQWLSCFDDTGRIVVGMSANELMELKE--NDDAKFMAAFEAVNCKKLVFRC 558
Query: 519 KIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
+ K + +GD QRV+ V A V+Y +E L++LI +
Sbjct: 559 RAKMDNFGDTQRVRYQVFSATLVDYKTEGNKLVELIKQ 596
>gi|395333749|gb|EJF66126.1| replication factor-a protein [Dichomitus squalens LYAD-421 SS1]
Length = 601
Score = 295 bits (754), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 162/449 (36%), Positives = 257/449 (57%), Gaps = 21/449 (4%)
Query: 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
A + PI +L+PYQ W IKARVT K D+R ++N RG+GK+FS L+D + GEIR T FNA
Sbjct: 166 AAVYPIESLSPYQTHWTIKARVTNKSDIRTWSNQRGEGKLFSVTLMD-ESGEIRATAFNA 224
Query: 173 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQ 232
VD Y+ ++ G+VYLISK + A+K F+++ NE+E+ E ++ V+ C + D +P +
Sbjct: 225 AVDELYDRLQDGKVYLISKAKVNLAKKKFSNVNNEYELTFERSTEVEECHDATD-VPTVK 283
Query: 233 FSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTL 292
F+F +IS ++ +S DVIG+V V+ I K + +R L + D SG SV +TL
Sbjct: 284 FNFINISSLQDVAKDSTCDVIGVVKDVSELSSITSKATSKIPKRELTIVDRSGYSVRMTL 343
Query: 293 WGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELR 352
WG K E D PV++ K KV DF G+S+ + S+ + +NPD EAH LR
Sbjct: 344 WG--------KQAEQYDENDHPVIAFKGAKVGDFQGRSLSMMSSSTMHVNPDIPEAHALR 395
Query: 353 EWFDSGGKNAATVSISREIAAGGA----KNEIHKTVSQIKNEGLGRSEKPDWVTVRAFIT 408
W+D+ G + S + + +GG + EI + ++ +K LG +KPD RA I
Sbjct: 396 GWYDAAGADQQFQSHTVTMVSGGGITFDRAEI-RNLNDVKVSELGMFDKPDNFCARATIM 454
Query: 409 FIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGL 468
IKSD+ Y ACP C KKV Q G W+C++C++ + ++RY++ + D +G
Sbjct: 455 HIKSDNISYPACPTT----GCGKKVLQMGESWRCEKCDKSFPKPEHRYMVAMAVSDYSGQ 510
Query: 469 TWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDE 528
W F + G+ + G A EL +K ++++++ +I + + + F + K++ Y D+
Sbjct: 511 AWFQGFNDVGQTVFGMTADELVEIKD--REELQYNTVINASIGKTFNFTCRAKQDTYNDQ 568
Query: 529 QRVKITVIRADQVNYSSESRYLLDLISKS 557
RV+ + R +NY E++YL DL+ S
Sbjct: 569 TRVRYGISRILPLNYREEAKYLADLLLTS 597
>gi|403214488|emb|CCK68989.1| hypothetical protein KNAG_0B05560 [Kazachstania naganishii CBS
8797]
Length = 633
Score = 295 bits (754), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 173/535 (32%), Positives = 301/535 (56%), Gaps = 28/535 (5%)
Query: 34 PQPVRVNNYSAPNSGTF--NLQNSGTFNSQNPGSFSTPNSG-TFRAPNAGSIVRSFQPTV 90
P +N Y A + L+ N +P + ++ +G + A N+G+ S ++
Sbjct: 115 PNSTFLNTYMAAHINELVPELKGDDEANDAHPAAENSTTTGISGTATNSGAAAASATNSM 174
Query: 91 QPPYQPPPNFRNHGPILKNEAPAR-IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGD 149
P N N + ++ I I L+PYQ W IKARV+ KG+++ ++N RG+
Sbjct: 175 TGQSDRP--LGNPATSFGNSSKSKPIFAIEQLSPYQNVWTIKARVSFKGEIKTWSNQRGE 232
Query: 150 GKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWE 209
GK+F+ + LD+ GEIR T FN + ++YEI++ G+VY +SK L+PA+ F++L + +E
Sbjct: 233 GKLFNVNFLDT-SGEIRATAFNDMATKYYEILQEGKVYYVSKARLQPAKPQFSNLSHPYE 291
Query: 210 IFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKN 269
+ L+ S V+ C ++D ++PK F+F + +++ E NS VDV+GI+ +VN + + +
Sbjct: 292 LSLDRESVVEEC-QDDINVPKTHFNFIKLDTVQNQEANSTVDVLGIIKTVNDAFTLTSRA 350
Query: 270 GMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGK 329
G RR + L D S S+ + LW L + ++ V+++K +V+DF GK
Sbjct: 351 GKTFDRRDIVLVDDSNSSINVGLW--------NTLAKEFNMPEGSVVAIKGVRVSDFGGK 402
Query: 330 SIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNE---IHKTVSQ 386
S+ ++ L NP+ EA+ L+ W+DS G +A ++ ++ G + N I + +S
Sbjct: 403 SLTMGFTSNLIPNPEIPEAYALKGWYDSEGHSANFTALGQDNVPGASPNAGKFIAQRISI 462
Query: 387 IK--NEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGN-RWQCD 443
K + LG+S+ D+ ++RA I+F+K D+F Y AC ++ CNKK QS + W+C+
Sbjct: 463 GKAIADNLGKSDAGDYFSIRAAISFLKVDNFAYPAC----SNKDCNKKAIQSTDGTWRCE 518
Query: 444 RCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFG 503
+CN + ++ ++RY+L I D+TG WV F E E++LG A +L LK +D F
Sbjct: 519 KCNTDNEKPEWRYILTLSIMDETGQLWVVLFNEQAEQLLGVSATKLTDLKE--KDPKEFS 576
Query: 504 EIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKSF 558
+ ++ NQY FR++ +E+ Y D+ R++ +V Q+NY +E+ +L +SK+F
Sbjct: 577 RLTQNLQMNQYDFRIRAREDNYNDQTRIRYSVSNIHQLNYKAEADFLAAELSKAF 631
>gi|359320313|ref|XP_003639310.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Canis lupus familiaris]
Length = 616
Score = 294 bits (753), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 161/441 (36%), Positives = 258/441 (58%), Gaps = 19/441 (4%)
Query: 114 RIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAV 173
+++PIA+L PYQ +W I ARVT K +R ++N+RG+GK+FS +L+D + GEIR T FN
Sbjct: 183 KVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVD-ESGEIRATAFNEQ 241
Query: 174 VDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQF 233
VD+F+ +I++ +VY ISKG LK A K F +KN++E+ ++V C E+ +P QF
Sbjct: 242 VDKFFPLIDMNKVYYISKGILKIANKQFTAVKNDYEMTFNNETSVMPC-EDGHHLPTVQF 300
Query: 234 SFRHISEIESAENNSIVDVIGIVISVNPSVPI-LRKNGMETQRRILNLKDTSGRSVELTL 292
F I ++ES +S++D+IGI S + I ++ N E +R + L D SG+ V TL
Sbjct: 301 DFTGIGDLESKTKDSLIDIIGICKSYEEATKITVKSNNREVSKRNIYLMDMSGKVVTATL 360
Query: 293 WGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELR 352
WG+ ++ Q PV+++K +V+DF G+S+ + S+ + +NPD EA++LR
Sbjct: 361 WGEDADRFDGSRQ--------PVMAIKGARVSDFGGRSLSVLSSSTIIVNPDIPEAYKLR 412
Query: 353 EWFDSGGKNAATVSISR-EIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIK 411
WFDS G+ +SIS + G N KT+ ++K+E LG +K D+ + A + +++
Sbjct: 413 GWFDSEGQALDGISISDLKSGGTGGGNTNWKTLYEVKSENLGHGDKADYFSSVATVVYLR 472
Query: 412 SDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTW 470
++ Y ACP + CNKKV Q ++C++C+ E YR +L I D W
Sbjct: 473 KENCMYQACP----TQDCNKKVIDQQNGLYRCEKCDSEFPSFKYRMILSVNIADFQENQW 528
Query: 471 VTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQR 530
VT FQES E I+G Y+ + + +++ F E+ ++ F + FR+++K E Y DE R
Sbjct: 529 VTCFQESAEAIIG--QNTAYLGELKEKNEQAFEEVFQNANFRSFTFRIRVKLETYNDESR 586
Query: 531 VKITVIRADQVNYSSESRYLL 551
+K TV+ V+Y R L+
Sbjct: 587 IKATVMDVKPVDYREYGRRLI 607
>gi|326931344|ref|XP_003211792.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Meleagris gallopavo]
Length = 601
Score = 294 bits (753), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 181/482 (37%), Positives = 275/482 (57%), Gaps = 26/482 (5%)
Query: 85 SFQPTVQPPYQPPPN-FRNHGPILKNEAP----ARIIPIAALNPYQGRWAIKARVTAKGD 139
S + P Y P N F + P ++++PIA+LNPYQ +W I ARVT KG
Sbjct: 133 SVAGSAAPKYHAPSNQFSKASAPSSVKTPGGTQSKVVPIASLNPYQSKWTICARVTQKGQ 192
Query: 140 LRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQK 199
+R ++N+RG+GK+FS +L+D + GEIR T FN D+F+ +IE+ +VY +KG+LK A K
Sbjct: 193 IRTWSNSRGEGKLFSIELVD-ESGEIRATAFNDQADKFFPLIELNKVYYFTKGNLKTANK 251
Query: 200 NFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISV 259
+ +KN++EI ++V C ++ +P QF F IS++E+ +SIVDVIGI S
Sbjct: 252 QYTAVKNDYEITFTNETSVVPC-DDAQHLPSVQFDFVSISDLENTPKDSIVDVIGICKSY 310
Query: 260 NPSVPILRK-NGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSV 318
I+ K N E +R ++L DTSG+ V TLWG+ E +K D PV+++
Sbjct: 311 EDVTKIVVKANNREVSKRNVHLMDTSGKLVTATLWGN----EAEKF----DGSRQPVIAI 362
Query: 319 KSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAK- 377
K +V+DF G+S+ + S+ + +NPD EA +LR WFDS G+ SIS ++ G A
Sbjct: 363 KGARVSDFGGRSLSVMSSSTVVVNPDSPEAFKLRGWFDSEGQLLECASIS-DVRGGSASG 421
Query: 378 -NEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT-Q 435
N KT+ + K+E LG+ +K D+ + I ++ ++ Y ACP + CNKKV Q
Sbjct: 422 VNTNWKTLYEAKSERLGQGDKADYFSCVGTIVHLRKENCMYQACP----SQDCNKKVIDQ 477
Query: 436 SGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYE 495
++C++C++E YR +L I D WVT FQES E ILG A L LK
Sbjct: 478 QNGLYRCEKCDREFPNFKYRMMLLVTIADSLDYQWVTCFQESAEFILGQSATFLGELKE- 536
Query: 496 LQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLIS 555
+++ F E+ ++ FN Y F++++K E Y DE R+K T + VNY S+ L+ I
Sbjct: 537 -KNEQAFEEVFQNANFNTYEFKIRVKLETYNDESRIKATALDVKPVNYREYSKRLIASIR 595
Query: 556 KS 557
++
Sbjct: 596 RN 597
>gi|349605285|gb|AEQ00575.1| Replication protein A 70 kDa DNA-binding subunit-like protein,
partial [Equus caballus]
Length = 481
Score = 294 bits (753), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 173/476 (36%), Positives = 274/476 (57%), Gaps = 23/476 (4%)
Query: 89 TVQPPYQPPPNF-RNHGPILKNEA---PARIIPIAALNPYQGRWAIKARVTAKGDLRRYN 144
TV Y F + G L N + A+++PIA+L PYQ +W I ARVT K +R ++
Sbjct: 19 TVSKAYGASKTFGKAGGASLVNSSGGTQAKVVPIASLTPYQSKWTICARVTNKSQIRTWS 78
Query: 145 NARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHL 204
N+RG+GK+FS +L+D + GEIR T FN D+F+ +++V +VY SKG+LK A K F +
Sbjct: 79 NSRGEGKLFSIELVD-ESGEIRATAFNEQADKFFPLLDVNKVYYFSKGTLKIANKQFTAV 137
Query: 205 KNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVP 264
KN++E+ ++V C E+D +P QF F I E+E+ +S+VD+IGI S +
Sbjct: 138 KNDYEMTFNNETSVMPC-EDDHHLPTVQFDFTGIGELENKPKDSLVDIIGICKSYEDATK 196
Query: 265 I-LRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKV 323
I ++ N E +R + L DTSG+ V TLWG+ ++ Q PV+++K +V
Sbjct: 197 ITVKSNNREVSKRNIYLMDTSGKVVTTTLWGEDADRFDGSRQ--------PVMAIKGARV 248
Query: 324 NDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISR-EIAAGGAKNEIHK 382
+DF G+S+ + S+ + +NPD +EA++LR WFDS G+ VSIS + G N K
Sbjct: 249 SDFGGRSLSVLSSSTVIMNPDISEAYKLRGWFDSEGQALDGVSISDLKGGGTGGSNTNWK 308
Query: 383 TVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQ 441
T+ ++K+E LG+ +K D+ + A + +++ ++ Y ACP + CNKKV Q ++
Sbjct: 309 TLYEVKSENLGQGDKADYFSSVATVVYLRKENCMYQACP----SQDCNKKVIDQQNGLYR 364
Query: 442 CDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVR 501
C++C+ E YR +L I D WVT FQES E ILG Y+ + + +++
Sbjct: 365 CEKCDSEFPSFKYRMILSVNIADFQENQWVTCFQESAEAILG--QNTAYLGELKEKNEQA 422
Query: 502 FGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKS 557
F E+ ++ F + FR+++K E + DE R+K TV+ V+Y R L+ I K+
Sbjct: 423 FEEVFQNANFRSFTFRIRVKLETFNDESRIKATVMDVKPVDYREYGRRLIMNIRKN 478
>gi|448117323|ref|XP_004203227.1| Piso0_000828 [Millerozyma farinosa CBS 7064]
gi|359384095|emb|CCE78799.1| Piso0_000828 [Millerozyma farinosa CBS 7064]
Length = 629
Score = 294 bits (752), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 160/456 (35%), Positives = 263/456 (57%), Gaps = 28/456 (6%)
Query: 114 RIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAV 173
++ I L+PYQ W IKARV+ KGD+R+++NARG+GK+F+ + LD + EIR T FN +
Sbjct: 184 QVNAIEQLSPYQNHWTIKARVSYKGDIRKWSNARGEGKLFNVNFLD-ESDEIRATAFNDL 242
Query: 174 VDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQF 233
D+FY+ +E G+VY +SK ++ ++ F+HL + +E+ L+ + ++ C + + +PK F
Sbjct: 243 ADKFYQQLEEGKVYYVSKARIQQSKPQFSHLSHPYELALDRDTVIEECFDTSN-VPKIHF 301
Query: 234 SFRHISEIESAENNSIVDVIGIVISVNPSVPILRKN-GMETQRRILNLKDTSGRSVELTL 292
+F +++IE+AE NSIVDVIG++ VNP I K+ G RR + + D S ++ + L
Sbjct: 302 NFTKLNDIENAEANSIVDVIGVLKEVNPVFQITAKSTGKPFDRRNITIVDDSNVAITVGL 361
Query: 293 WG----DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEA 348
W DF EG V++ K K+ DF+G+S+ + + +NPD EA
Sbjct: 362 WNTSAVDFTVSEG------------SVIAFKGCKIQDFAGRSLTLTHAGSMMVNPDTPEA 409
Query: 349 HELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFIT 408
+ L+ WFD+ G + S+ E +A K++ Q + E LG SEKPD+ ++A I
Sbjct: 410 YSLKGWFDNKGVHENFKSLKNENSATKNAFNSRKSILQAQEENLGMSEKPDFFNIKATIN 469
Query: 409 FIKSDSFCYTACPLMI--GDRQ----CNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQ 461
F K+++FCY AC ++ G +Q CN+KV QS W+C++C+ E YRY+L
Sbjct: 470 FFKTENFCYPACNNVLDSGSQQLSNTCNRKVVEQSDGTWRCEKCDMNFAEPHYRYILNCS 529
Query: 462 IQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQ--DDVRFGEIIRSRVFNQYLFRLK 519
+ D TG W+T F + +++ G PA EL LK + ++ F +II + FRLK
Sbjct: 530 VMDSTGQLWITLFDQEAQKLFGIPAGELLKLKEQQMNGENSEFQKIINDVTMKGFNFRLK 589
Query: 520 IKEELYGDEQRVKITVIRADQVNYSSESRYLLDLIS 555
+++ Y RV+ V+ V++++E +L+ +S
Sbjct: 590 ARQDSYNGVLRVRYQVLSISDVDFNAECDHLITQLS 625
>gi|320583428|gb|EFW97641.1| Subunit of heterotrimeric Replication Protein A (RPA) [Ogataea
parapolymorpha DL-1]
Length = 604
Score = 294 bits (752), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 166/478 (34%), Positives = 277/478 (57%), Gaps = 43/478 (8%)
Query: 95 QPPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFS 154
+PPP ++N + I L+PYQ W IKARV+ K D++ ++N RGDGK+F+
Sbjct: 149 KPPPKYQN------------LYSIDQLSPYQNSWTIKARVSFKSDMKHWSNQRGDGKLFN 196
Query: 155 FDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEA 214
+LLD + GEIR T FN V ++F++++E +V+ ISK S++ A+ F++LK+++E+ +
Sbjct: 197 VNLLD-ETGEIRATAFNQVAEKFWDLLEENKVFYISKASMQMAKPQFSNLKHQYELQFDK 255
Query: 215 TSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKN-GMET 273
+ ++ C ++D +PK F F + ++++ EN +++DVIGI+ V I+ K+ G
Sbjct: 256 DTIIEPC-DDDSDVPKLHFDFVPLDQVQNLENGAVIDVIGILKEVKDKQEIVAKSTGKPF 314
Query: 274 QRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGT 333
RR + L D S +V + LW NK ++ DV V++ K +V DF GKS+
Sbjct: 315 DRRDIVLVDKSQFAVNIGLW----NKHAREF----DVPVGSVVAFKGCRVQDFGGKSLSL 366
Query: 334 IPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGA-----KNEI--HKTVSQ 386
IP+ + +NPD EA++++ W+D+ G + + SI+ E + GA K I KT+ Q
Sbjct: 367 IPAATIVVNPDIEEAYKIKGWYDAQGSHQSFKSIALESGSSGATSLTSKQSILERKTIKQ 426
Query: 387 IKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRC 445
+++E LG +KPD+ +++A I+FIK+D+FCY AC CNKK+ + N W+C++C
Sbjct: 427 VQDEKLGLKDKPDYFSLKATISFIKTDNFCYPAC----RSEGCNKKLLEQDNGTWRCEKC 482
Query: 446 NQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDV--RFG 503
N E +YRY+L + D+TG W+T F E ++LG A EL LK + +D G
Sbjct: 483 NINHPEPNYRYILTVSVVDETGQMWLTLFDEQAAQLLGLSAAELLKLKNDAEDPSIESVG 542
Query: 504 E------IIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLIS 555
E I + F + L R++ K + Y + R + TV +V+Y +E L++++S
Sbjct: 543 ENALKNFINENISFKEVLLRVRGKVDSYQGQDRARFTVASLAKVDYLAECEALVEILS 600
>gi|224076356|ref|XP_002197483.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit isoform
1 [Taeniopygia guttata]
gi|449479760|ref|XP_004177049.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit isoform
2 [Taeniopygia guttata]
Length = 613
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 196/552 (35%), Positives = 295/552 (53%), Gaps = 56/552 (10%)
Query: 10 PIGNPKIFSESELTAQKTIPSNNLPQPVRVNNYSAPNSGTFNLQNSGTFNSQNPGSFSTP 69
PIGNP+ ++E + + P+ NL S P NL +G P
Sbjct: 110 PIGNPQPYNEGQ-GQRSAAPAGNLAA-------SKPQQQNGNLSGAG------------P 149
Query: 70 NSGTFRAPNAGSIVRSFQPTVQPPYQPPPNFRNHGPILKNEAPARIIPIAALNPYQGRWA 129
+ + AP+ F P P G +K ++PIA+LNPYQ +W
Sbjct: 150 AAPKYHAPS-----NQFGKASAPSALKTPG----GSQIK------VVPIASLNPYQSKWT 194
Query: 130 IKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLI 189
I ARVT KG +R ++N+RG+GK+FS +L+D + GEIR T FN D+F+ +IE+ +VY
Sbjct: 195 ICARVTQKGQIRTWSNSRGEGKLFSIELVD-ESGEIRATAFNDQADKFFPLIELNKVYYF 253
Query: 190 SKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSI 249
+KG+LK A K + +KN++EI ++V C ++ +P QF F IS++E+ +SI
Sbjct: 254 TKGNLKTANKQYTAVKNDYEITFTNETSVVPC-DDAQHLPSVQFDFVSISDLENTPKDSI 312
Query: 250 VDVIGIVISVNPSVPILRK-NGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMV 308
VDVIGI S I+ K N E +R ++L DTSG+ V TLWG+ E
Sbjct: 313 VDVIGICKSYEDVTKIVVKANNREVSKRNVHLMDTSGKLVTATLWGNEA--------EQF 364
Query: 309 DVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGK--NAATVS 366
D PV+++K +V+DF G+S+ + S+ + INPD EA +LR WFDS G+ A++S
Sbjct: 365 DGSRQPVIAIKGARVSDFGGRSLSVLSSSTVVINPDSPEAFKLRGWFDSEGQLLECASIS 424
Query: 367 ISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGD 426
R A GA N KT+ + K E LG+ +K D+ + I ++ ++ Y ACP
Sbjct: 425 DVRGGPAAGA-NTNWKTLFEAKAENLGQGDKADYFSCVGTIVHLRKENCMYQACP----S 479
Query: 427 RQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCP 485
+ CNKKV Q ++C++C++E YR +L I D WVT FQ++ E ILG
Sbjct: 480 QDCNKKVIDQQNGLYRCEKCDREFPNFKYRLMLLVTIADCLEYQWVTCFQDTAEIILGQN 539
Query: 486 AKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSS 545
A L LK +++ F E+ ++ FN Y FR+++K E Y DE R+K T + VNY
Sbjct: 540 AAFLGELKE--KNEQAFEEVFQNANFNTYEFRIRVKLETYNDESRIKATAMDVKPVNYRE 597
Query: 546 ESRYLLDLISKS 557
S+ L+ I ++
Sbjct: 598 YSKRLIANIRRN 609
>gi|344303316|gb|EGW33590.1| hypothetical protein SPAPADRAFT_135958 [Spathaspora passalidarum
NRRL Y-27907]
Length = 626
Score = 293 bits (750), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 165/455 (36%), Positives = 270/455 (59%), Gaps = 28/455 (6%)
Query: 111 APARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCF 170
AP RI PI ++PYQ W IKARV+ KGDLR ++NA+G G++FS + LD + EI+ T F
Sbjct: 176 APIRITPIETISPYQNNWTIKARVSYKGDLRTWSNAKGTGQLFSVNFLD-ESDEIKATAF 234
Query: 171 NAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPK 230
N +R Y ++E G+VY ISK + A+K FNHL + +EI +E + + C ++ ++PK
Sbjct: 235 NETAERAYNLLEEGKVYYISKARVAAAKKKFNHLTHPYEITMEKDTEITECF-DNTNVPK 293
Query: 231 QQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKN-GMETQRRILNLKDTSGRSVE 289
F+F +++I+ E+N+IVDVIG + VN I K+ G E RR + + D +G ++E
Sbjct: 294 LHFNFVKLNKIQDLESNAIVDVIGALKIVNEPFKITAKSTGKEFDRRNITIVDETGFAIE 353
Query: 290 LTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAH 349
+ LW + ++ ++ G +++ K KV D++G+S+ + NP+ EA+
Sbjct: 354 MGLWNNTA------VEFNIEQG--SIIAFKGCKVQDYNGRSLTLTQQGSVIPNPESPEAY 405
Query: 350 ELREWFDSGGKNAATVSISREIAAGGAKNEIH--KTVSQIKNEGLGRSEKPDWVTVRAFI 407
+L+ W+D+ G N + S+ E ++G + N+I K+++Q ++E LG+ EKPD+ TV+A I
Sbjct: 406 QLKGWYDNQGINESFKSLKVE-SSGASSNQIENRKSIAQAQDENLGKGEKPDYFTVKATI 464
Query: 408 TFIKSDSFCYTACPLMI----GDRQ------CNKKVTQ--SGNRWQCDRCNQEIDECDYR 455
++ K D+F Y ACP ++ G +Q CN+K+ + + W+C+RC+ E YR
Sbjct: 465 SYTKPDTFAYPACPNVVASNAGSQQARPSQPCNRKLVEQPTDGTWRCERCDINYPEPTYR 524
Query: 456 YLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYL 515
Y+ I D+TG WVT F ++ G A EL +K E QD+ F I F +Y
Sbjct: 525 YIYNCSILDETGQIWVTLFDNEARKLFGIDAGELTKIKEEDQDE--FTRRIEDISFKEYQ 582
Query: 516 FRLKIKEELYGDEQRVKITVIRADQVNYSSESRYL 550
FRL+ +++ Y D+ RV+ + D ++YS+E+ YL
Sbjct: 583 FRLRARQDTYNDQLRVRYQAVGIDFIDYSTEAEYL 617
>gi|260950665|ref|XP_002619629.1| hypothetical protein CLUG_00788 [Clavispora lusitaniae ATCC 42720]
gi|238847201|gb|EEQ36665.1| hypothetical protein CLUG_00788 [Clavispora lusitaniae ATCC 42720]
Length = 607
Score = 293 bits (750), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 159/452 (35%), Positives = 261/452 (57%), Gaps = 19/452 (4%)
Query: 108 KNEAPARII-PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIR 166
++ AP R + PI +L+PYQ W IK RV+ K D+R ++NA+G+GK+F+ + LD + EIR
Sbjct: 158 RSAAPERPVNPIESLSPYQNNWTIKGRVSYKSDVRTWSNAKGEGKLFNVNFLD-ESDEIR 216
Query: 167 VTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDD 226
T FN + D+FY +++ G+VY ++K ++ A+ F+HL + +E+ L+ + + C + D
Sbjct: 217 ATAFNDMADKFYNLLQEGKVYYVTKARIQQAKPKFSHLSHPYELSLDKDTEITECFDTSD 276
Query: 227 SIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKN-GMETQRRILNLKDTSG 285
+PK +F +++I+SAE ++I+DVIG++ +VN I K+ G RR + + D S
Sbjct: 277 -VPKINMNFTKLNQIQSAEKDTIIDVIGVIQNVNDVFQITAKSTGKPFDRRNITIVDDSN 335
Query: 286 RSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDF 345
+++L LW + + VG V++VK KV DF G+S+ PS L NPD
Sbjct: 336 FAIDLGLWN------ATAVDFNIPVG--SVIAVKGAKVQDFGGRSLSLTPSGSLLSNPDI 387
Query: 346 AEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRA 405
EA++L+ W+DS G + S+ E + + KT++ + LG EKPD+ +++A
Sbjct: 388 PEAYQLKGWYDSKGSSENFQSLKTETGSSTDSLKDRKTIALAEQLDLGTKEKPDYFSIKA 447
Query: 406 FITFIKSDSFCYTACPLMI-----GDRQCNKKVTQ-SGNRWQCDRCNQEIDECDYRYLLQ 459
I + K+D+FCY AC + G CN+KV Q S W+C+RCN E YRY+L
Sbjct: 448 TINYFKTDNFCYPACNNEVNTNGRGPSPCNRKVIQESDGSWRCERCNLTFAEPHYRYILN 507
Query: 460 AQIQDQTGLTWVTAFQESGEEILGCPAKELYMLK-YELQDDVRFGEIIRSRVFNQYLFRL 518
I D TG W T F E G+++ A EL LK E ++ F E++ S ++ FRL
Sbjct: 508 CSIMDHTGQIWATFFDEEGKKLFNKTAGELMALKEMEEGENHEFMELVSSVTMKEFNFRL 567
Query: 519 KIKEELYGDEQRVKITVIRADQVNYSSESRYL 550
+ ++E + RV+ V+ V++++ES++L
Sbjct: 568 RARQESFNGNMRVRYNVVSIADVDFNAESQHL 599
>gi|355717104|gb|AES05824.1| replication protein A1, 70kDa [Mustela putorius furo]
Length = 615
Score = 293 bits (750), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 165/441 (37%), Positives = 258/441 (58%), Gaps = 19/441 (4%)
Query: 114 RIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAV 173
+++PIA+L PYQ +W I ARVT K +R ++N+RG+GK+FS +L+D + GEIR T FN
Sbjct: 183 KVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVD-ESGEIRATAFNEQ 241
Query: 174 VDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQF 233
VD+F+ +I++ +VY ISKG LK A K F +KN++E+ ++V C E+ +P QF
Sbjct: 242 VDKFFPLIDMNKVYYISKGILKIANKQFTAVKNDYEMTFNNETSVTPC-EDGHHLPTVQF 300
Query: 234 SFRHISEIESAENNSIVDVIGIVISVNPSVPI-LRKNGMETQRRILNLKDTSGRSVELTL 292
F I ++E+ +S++D+IGI S + I ++ N E +R + L D SG+ V TL
Sbjct: 301 DFTGIGDLENKPKDSLIDIIGICKSYEDATKITVKSNNREVSKRNIYLMDMSGKVVTATL 360
Query: 293 WGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELR 352
WG+ ++ Q PV+++K +V+DF G+S+ + S+ + +NPD EA++LR
Sbjct: 361 WGEDADRFDGSRQ--------PVMAIKGARVSDFGGRSLSVLSSSTVIVNPDIPEAYKLR 412
Query: 353 EWFDSGGKNAATVSISREIAAG-GAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIK 411
WFDS G+ +SIS + G G N KT+ + K+E LG +K D+ + A I +++
Sbjct: 413 GWFDSEGQALDGISISDVKSGGTGGINTNWKTLYEAKSENLGHGDKADYFSSVATIVYLR 472
Query: 412 SDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTW 470
++ Y ACP + CNKKV Q ++C++C+ E YR +L I D W
Sbjct: 473 KENCIYQACPT----QDCNKKVIDQQNGLYRCEKCDSEFPSFKYRMILSVNIADFQENQW 528
Query: 471 VTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQR 530
VT FQES E I+G L LK +++ F E+ ++ F ++FR+++K E Y DE R
Sbjct: 529 VTCFQESAEAIIGQSTAHLGELKE--KNEQAFEEVFQNANFRSFIFRIRVKLETYNDESR 586
Query: 531 VKITVIRADQVNYSSESRYLL 551
+K TVI V+Y R L+
Sbjct: 587 IKATVIDVKPVDYKEYGRRLI 607
>gi|367005983|ref|XP_003687723.1| hypothetical protein TPHA_0K01560 [Tetrapisispora phaffii CBS 4417]
gi|357526028|emb|CCE65289.1| hypothetical protein TPHA_0K01560 [Tetrapisispora phaffii CBS 4417]
Length = 616
Score = 293 bits (750), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 157/446 (35%), Positives = 264/446 (59%), Gaps = 30/446 (6%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
I I L+PYQ W IKARV+ KGD++ ++N +G+GK+F+ + LD+ GEIR T FN +
Sbjct: 181 ISAIEQLSPYQNIWTIKARVSFKGDIKTWHNQKGEGKLFNVNFLDT-SGEIRATAFNDMA 239
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
+F EI++ G+VY +SK L+PA+ F++L + +E+ ++ + ++ C +E + +PK F+
Sbjct: 240 TKFNEILQEGKVYYVSKARLQPAKPQFSNLSHPYELSMDRETIIEECKDESN-VPKTHFN 298
Query: 235 FRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWG 294
F ++ +E+ E NS +DV+G++ +VNP ++ K G + RR + + D + S+ + LW
Sbjct: 299 FVKLNVVENQEANSTIDVLGVIQTVNPHFELVSKAGKKFDRRDITIVDDTSYSISVGLWN 358
Query: 295 ----DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHE 350
DF EG ++++K +V+DF GKS+ S+ L NP+ EA+
Sbjct: 359 QQATDFNLPEG------------SIVAIKGVRVSDFGGKSLSMGFSSTLIPNPEVQEAYA 406
Query: 351 LREWFDSGGKNAATVSISREIAAGGAKNEI-----HKTVSQIKNEGLGRSEKPDWVTVRA 405
L+ W+D+ GKN+ S+ +E A A+N I T+++ + + LGRSEK D+ +V+A
Sbjct: 407 LKGWYDANGKNSNFTSLKQEGGAVSAQNLIKFISERTTIAKAQADNLGRSEKGDYFSVKA 466
Query: 406 FITFIKSDSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQD 464
I+F+K D+F Y AC CNKKV ++ + W+C+RCN+ + +YRY+L I D
Sbjct: 467 SISFLKVDNFAYPAC----SSDDCNKKVLENPDGTWRCERCNKNQESPEYRYMLTISIID 522
Query: 465 QTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEEL 524
+TG W+T F + +++LG A +L L+ D F + + N Y FR++ +E+
Sbjct: 523 ETGQMWLTLFNDQAKQLLGVDANKLTELRDTDAD--AFTKTTQDIQMNPYDFRIRAREDN 580
Query: 525 YGDEQRVKITVIRADQVNYSSESRYL 550
Y D+ R++ TV +NY E+ YL
Sbjct: 581 YNDQTRIRYTVSNLHNLNYKVEADYL 606
>gi|405970353|gb|EKC35267.1| Replication protein A 70 kDa DNA-binding subunit [Crassostrea
gigas]
Length = 624
Score = 293 bits (750), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 162/447 (36%), Positives = 255/447 (57%), Gaps = 20/447 (4%)
Query: 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
+R+ I +L PYQ RW I+ARVT K +R ++N+RG+GK+FS L D D EIR T FN
Sbjct: 192 SRVHKIDSLTPYQNRWKIRARVTQKSGIRTWSNSRGEGKLFSVTLTD-DSAEIRATGFND 250
Query: 173 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQ 232
VD+FYE++EV +VY SK +LK A K + ++N++E+ + ++ C ++D S+P
Sbjct: 251 AVDKFYELLEVNKVYYFSKATLKTANKQYTTVQNDYEMTFNPDTIIEPC-DDDSSLPTMN 309
Query: 233 FSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGM-ETQRRILNLKDTSGRSVELT 291
F+F I+E+ES S++DVIG+V + I+ K E +R L + D SG SV LT
Sbjct: 310 FNFVKINELESKAPTSLIDVIGVVKNCGDVTTIIGKQSQKEITKRDLQIVDQSGMSVNLT 369
Query: 292 LWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHEL 351
LWG + Q+ D PV++VK KV+D+ G+S+ + S+Q+ NPD E H L
Sbjct: 370 LWG----ADAQQF----DGSGHPVIAVKGAKVSDYGGRSLSAMASSQIIHNPDLREGHML 421
Query: 352 REWFDSGGKNAATVSISREIAAGGAKNEIH-KTVSQIKNEGLGRSEKPDWVTVRAFITFI 410
+ WF+ G N + GG + K ++IK+E +G ++KP++ T +A + F+
Sbjct: 422 KGWFEHDGHNMDFHGYKNDGMGGGGGGSTNWKCFAEIKSENIG-ADKPEYFTTKATVLFL 480
Query: 411 KSDSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQTGLT 469
+ ++ Y ACP CNKKV GN ++C++C +E +R +L A + D +
Sbjct: 481 RKENCMYQACPT----ESCNKKVVDQGNGMYRCEKCAREFPNYKWRMILSANLGDYSDNQ 536
Query: 470 WVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQ 529
WVT FQES E +LG A +L LK ++ F ++ F Y+F+ + K E Y DE
Sbjct: 537 WVTCFQESAEAMLGIKADDLGALKDS--NEQAFDQVFTEACFKSYIFKFRAKVETYNDES 594
Query: 530 RVKITVIRADQVNYSSESRYLLDLISK 556
R+K + A +++ +S+ L++ I K
Sbjct: 595 RLKTVTMNASTIDFKEQSQRLIEEIKK 621
>gi|448119751|ref|XP_004203808.1| Piso0_000828 [Millerozyma farinosa CBS 7064]
gi|359384676|emb|CCE78211.1| Piso0_000828 [Millerozyma farinosa CBS 7064]
Length = 629
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 158/456 (34%), Positives = 263/456 (57%), Gaps = 28/456 (6%)
Query: 114 RIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAV 173
++ I L+PYQ W IKARV+ KGD+R+++NARG+GK+F+ + LD + EIR T FN +
Sbjct: 184 QVNAIEQLSPYQNHWTIKARVSYKGDIRKWSNARGEGKLFNVNFLD-ESDEIRATAFNDL 242
Query: 174 VDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQF 233
D+FY+ +E G+VY +SK ++ ++ F+HL + +E+ L+ + ++ C + + +PK F
Sbjct: 243 ADKFYQQLEEGKVYYVSKARIQQSKPQFSHLSHPYELALDRDTVIEECFDTSN-VPKIHF 301
Query: 234 SFRHISEIESAENNSIVDVIGIVISVNPSVPILRKN-GMETQRRILNLKDTSGRSVELTL 292
+F +++IE+AE NSIVDVIG++ VNP I K+ G RR + + D S ++ + L
Sbjct: 302 NFTKLNDIENAEANSIVDVIGVLKEVNPVFQITAKSTGKPFDRRNITIVDDSNVAITVGL 361
Query: 293 WG----DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEA 348
W DF EG V++ K K+ DF+G+S+ + + +NPD EA
Sbjct: 362 WNTSAVDFTVSEG------------SVIAFKGCKIQDFAGRSLTLTHAGSMMVNPDTPEA 409
Query: 349 HELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFIT 408
+ L+ WFD+ G + S+ E + K++ Q + E LG SEKPD+ ++A I
Sbjct: 410 YSLKGWFDNKGVHENFKSLKNENSTTKNAFSSRKSILQAQEENLGMSEKPDFFNIKATIN 469
Query: 409 FIKSDSFCYTACPLMI--GDRQ----CNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQ 461
F K+++FCY AC ++ G +Q CN+KV QS W+C++C+ E YRY+L
Sbjct: 470 FFKTENFCYPACNNVLDSGSQQLSNTCNRKVVEQSDGTWRCEKCDMNFAEPHYRYILNCS 529
Query: 462 IQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQ--DDVRFGEIIRSRVFNQYLFRLK 519
+ D +G W+T F + +++ G PA EL LK + ++ F +II ++ FRLK
Sbjct: 530 VMDSSGQLWITLFDQEAQKLFGTPAGELLKLKEQQMNGENSDFQKIINDVTMKEFNFRLK 589
Query: 520 IKEELYGDEQRVKITVIRADQVNYSSESRYLLDLIS 555
+++ Y RV+ V+ V++++E +L+ +S
Sbjct: 590 ARQDSYNGVLRVRYQVLSISDVDFNAECEHLITQLS 625
>gi|328788416|ref|XP_003251128.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit isoform
2 [Apis mellifera]
Length = 590
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 167/473 (35%), Positives = 268/473 (56%), Gaps = 22/473 (4%)
Query: 87 QPTVQPPYQPPPNFR-NHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNN 145
+P Q N + NH + PI AL+PYQ RW IKARV +K ++R ++N
Sbjct: 126 KPQAQIAQSAQTNLKPNHNMQQSSTNNISTTPIVALSPYQNRWVIKARVVSKSNIRTWSN 185
Query: 146 ARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLK 205
+RG+GK+FS DL+D + GEIR T F D+FY+++E+G+VY IS+ +LKPA K FN+LK
Sbjct: 186 SRGEGKLFSMDLID-ESGEIRCTAFRNECDKFYDMLEIGKVYYISRATLKPANKQFNNLK 244
Query: 206 NEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIV-ISVNPSVP 264
N++E+ L S + C + D IP QF F I++I E N I++++GIV S + +
Sbjct: 245 NDYEMTLIGDSEIIPCHDSGDDIPSLQFDFVSINDINKKEQNDIMNILGIVKYSGDLQIL 304
Query: 265 ILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVN 324
R +G E ++R ++L D S V+++LWG E D PVL+VK ++
Sbjct: 305 TSRNSGRELRKRDVSLVDESNTMVKVSLWGSQA--------EEFDGSSNPVLAVKGARIT 356
Query: 325 DFS-GKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKT 383
+F+ GK++ T+ ST L I+PD AH LR WF++ G+N S+S+ + +E+ T
Sbjct: 357 EFNGGKNLSTLSSTVLQIDPDLPAAHRLRGWFNTMGRNEEATSLSKPFGSTTGVSELWIT 416
Query: 384 VSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKK-VTQSGNRWQC 442
+ K+ LG + D TV+A + I+ ++ Y ACP C KK V Q+ + ++C
Sbjct: 417 FQEAKDMELGY-KNSDIYTVKATLNMIRMENAIYKACP----SENCKKKLVDQANDMYRC 471
Query: 443 DRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDV-R 501
++C++E YR L + D T WVTAF + E+IL A+EL LK ++D+
Sbjct: 472 EKCDKEYPNYRYRLLANISLADWTDNQWVTAFNDEAEKILSSTAQELGELK---ENDIDA 528
Query: 502 FGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLI 554
+ E F ++F++++K E++GDE R++ T + ++Y + +L+ I
Sbjct: 529 YSEKFSEATFKSFIFKIRVKVEVFGDENRLRATCLGVSPMDYKLYNNHLITQI 581
>gi|431891029|gb|ELK01908.1| Replication protein A 70 kDa DNA-binding subunit [Pteropus alecto]
Length = 599
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 180/504 (35%), Positives = 287/504 (56%), Gaps = 28/504 (5%)
Query: 62 NPGSFSTPNSGTFRAPNAGSIVRSFQPTVQPPYQPPPNF-RNHGPILKNEA---PARIIP 117
+P S ++P + + N S V S TV + F R G L N + A+++P
Sbjct: 113 SPVSAASPPTSKPQQQNGSSGVGS---TVSKAFGASKTFGRAGGTSLVNSSGGTQAKVVP 169
Query: 118 IAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRF 177
IA+L PYQ +W I ARVT K +R ++N+RG+GK+FS +L+D + GEIR T FN VD+F
Sbjct: 170 IASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVD-ESGEIRATAFNEQVDKF 228
Query: 178 YEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRH 237
+ +I+V +VY SKG+LK A K F +KN++E+ ++V C E+ +P QF F
Sbjct: 229 FPLIDVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVIPC-EDGHHLPTVQFDFTG 287
Query: 238 ISEIESAENNSIVDVIGIVISVNPSVPI-LRKNGMETQRRILNLKDTSGRSVELTLWGDF 296
I ++ES +S+VD+IGI S + I ++ N E +R + L D SG+ V TLWG+
Sbjct: 288 IGDLESKSKDSLVDIIGICKSYEDATKITVKSNNREVSKRNIYLMDMSGKVVSATLWGED 347
Query: 297 CNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFD 356
+K Q PV+++K +V+DF G+S+ + S+ + +NPD EA++LR WFD
Sbjct: 348 ADKFDGSRQ--------PVMAIKGARVSDFGGRSLSILSSSTIIVNPDIPEAYKLRGWFD 399
Query: 357 SGGKNAATVSISREIAAGG--AKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDS 414
S G+ VSIS ++ +GG N KT+ + K+E LG+ +K D+ + A + +++ ++
Sbjct: 400 SEGQALDGVSIS-DLKSGGIAGSNTNWKTLYEAKSENLGQGDKADYFSSVATVVYLRKEN 458
Query: 415 FCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTA 473
Y ACP + CNKKV Q ++C++C++E YR +L I D WVT
Sbjct: 459 SMYQACPT----QDCNKKVIDQQNGLYRCEKCDREFPNFKYRMILSVNIADFQENQWVTC 514
Query: 474 FQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKI 533
FQES E ILG Y+ + + +++ F EI ++ F ++F++++K E + DE R+K
Sbjct: 515 FQESAEAILG--QSTAYVGELKEKNEQAFEEIFQNANFRSFIFKIRVKLETFNDESRIKA 572
Query: 534 TVIRADQVNYSSESRYLLDLISKS 557
V+ V++ R L+ I K+
Sbjct: 573 VVMDVKPVDFREYGRRLIMNIRKN 596
>gi|57525314|ref|NP_001006221.1| replication protein A 70 kDa DNA-binding subunit [Gallus gallus]
gi|75571284|sp|Q5ZJJ2.1|RFA1_CHICK RecName: Full=Replication protein A 70 kDa DNA-binding subunit;
Short=RP-A p70; AltName: Full=Replication factor A
protein 1; Short=RF-A protein 1
gi|53133544|emb|CAG32101.1| hypothetical protein RCJMB04_17l6 [Gallus gallus]
Length = 614
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 180/482 (37%), Positives = 275/482 (57%), Gaps = 26/482 (5%)
Query: 85 SFQPTVQPPYQPPPN-FRNHGPILKNEAP----ARIIPIAALNPYQGRWAIKARVTAKGD 139
S + P Y P N F + P ++++PIA+LNPYQ +W I ARVT KG
Sbjct: 146 SVAGSAAPKYHAPSNQFSKASAPSSVKTPGGTQSKVVPIASLNPYQSKWTICARVTQKGQ 205
Query: 140 LRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQK 199
+R ++N+RG+GK+FS +L+D + GEIR T FN D+F+ +IE+ +VY +KG+LK A K
Sbjct: 206 IRTWSNSRGEGKLFSIELVD-ESGEIRATAFNDQADKFFPLIELNKVYYFTKGNLKTANK 264
Query: 200 NFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISV 259
+ +KN++EI ++V C ++ +P QF F IS++E+ +SIVDVIGI S
Sbjct: 265 QYTAVKNDYEITFNNETSVVPC-DDAQHLPSVQFDFVSISDLENTPKDSIVDVIGICKSY 323
Query: 260 NPSVPILRK-NGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSV 318
I+ K + E +R ++L DTSG+ V TLWG+ E +K D PV+++
Sbjct: 324 EDVTKIVVKASNREVSKRNVHLMDTSGKLVTATLWGN----EAEKF----DGSRQPVIAI 375
Query: 319 KSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAK- 377
K +V+DF G+S+ + S+ + +NPD EA +LR WFDS G+ SIS ++ G A
Sbjct: 376 KGARVSDFGGRSLSVLSSSTVVVNPDSPEAFKLRGWFDSEGQLLECASIS-DVRGGSASG 434
Query: 378 -NEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT-Q 435
N KT+ + K+E LG+ +K D+ + I ++ ++ Y ACP + CNKKV Q
Sbjct: 435 VNTNWKTLYEAKSERLGQGDKADYFSCVGTIVHLRKENCMYQACP----SQDCNKKVIDQ 490
Query: 436 SGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYE 495
++C++C++E YR +L I D WVT FQES E ILG A L LK
Sbjct: 491 QNGLYRCEKCDREFPNFKYRMMLLVTIADSLDYQWVTCFQESAEFILGQSATFLGELKD- 549
Query: 496 LQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLIS 555
+++ F E+ ++ FN Y F++++K E Y DE R+K T + VNY S+ L+ I
Sbjct: 550 -KNEQAFEEVFQNANFNTYEFKIRVKLETYNDESRIKATALDVKPVNYREYSKRLIASIR 608
Query: 556 KS 557
++
Sbjct: 609 RN 610
>gi|301765316|ref|XP_002918075.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Ailuropoda melanoleuca]
Length = 603
Score = 292 bits (747), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 169/454 (37%), Positives = 262/454 (57%), Gaps = 22/454 (4%)
Query: 104 GPILKNEA---PARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDS 160
G L N A +++PIA+L PYQ +W I ARVT K +R ++N+RG+GK+FS +L+D
Sbjct: 157 GTSLANSAGGTQVKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVD- 215
Query: 161 DGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDL 220
+ GEIR T FN VD+F+ +I++ +VY ISKG LK A K F +KN++E+ ++V
Sbjct: 216 ESGEIRATAFNEQVDKFFPLIDMNKVYYISKGILKIANKQFTAVKNDYEMTFNNETSVMP 275
Query: 221 CTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPI-LRKNGMETQRRILN 279
C E+ +P QF F I ++E+ +S++D+IGI S + I ++ N E +R +
Sbjct: 276 C-EDGHHLPTVQFDFTGIGDLENKPKDSLIDIIGICKSYEDATKITVKSNNREVSKRNIY 334
Query: 280 LKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQL 339
L D SG+ V TLWG+ ++ Q PV+++K +V+DF G+S+ + S+ +
Sbjct: 335 LMDMSGKVVTATLWGEDADRFDGSRQ--------PVMAIKGARVSDFGGRSLSVLSSSTV 386
Query: 340 FINPDFAEAHELREWFDSGGKNAATVSISREIAAG-GAKNEIHKTVSQIKNEGLGRSEKP 398
+NPD EA++LR WFDS G+ VSIS + G G N KT+ ++K+E LG +K
Sbjct: 387 IVNPDIPEAYKLRGWFDSEGQALDGVSISDLKSGGTGGSNTNWKTLYEVKSENLGHGDKA 446
Query: 399 DWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYL 457
D+ + A + +++ ++ Y ACP + CNKKV Q ++C++C+ E YR +
Sbjct: 447 DYFSSVATVVYLRKENCMYQACPT----QDCNKKVIDQQNGLYRCEKCDSEFPNFKYRMI 502
Query: 458 LQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFR 517
L I D WVT FQES E I+G L LK +++ F EI ++ F + FR
Sbjct: 503 LSVNIADFQENQWVTCFQESAEAIIGQSTSYLGELKD--KNEQAFEEIFQNANFRSFTFR 560
Query: 518 LKIKEELYGDEQRVKITVIRADQVNYSSESRYLL 551
+++K E Y DE R+K TV+ V+Y R L+
Sbjct: 561 IRVKLETYNDESRIKATVMDVKPVDYREYGRRLI 594
>gi|281342356|gb|EFB17940.1| hypothetical protein PANDA_006470 [Ailuropoda melanoleuca]
Length = 563
Score = 292 bits (747), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 169/454 (37%), Positives = 262/454 (57%), Gaps = 22/454 (4%)
Query: 104 GPILKNEAPA---RIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDS 160
G L N A +++PIA+L PYQ +W I ARVT K +R ++N+RG+GK+FS +L+D
Sbjct: 117 GTSLANSAGGTQVKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVD- 175
Query: 161 DGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDL 220
+ GEIR T FN VD+F+ +I++ +VY ISKG LK A K F +KN++E+ ++V
Sbjct: 176 ESGEIRATAFNEQVDKFFPLIDMNKVYYISKGILKIANKQFTAVKNDYEMTFNNETSVMP 235
Query: 221 CTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPI-LRKNGMETQRRILN 279
C E+ +P QF F I ++E+ +S++D+IGI S + I ++ N E +R +
Sbjct: 236 C-EDGHHLPTVQFDFTGIGDLENKPKDSLIDIIGICKSYEDATKITVKSNNREVSKRNIY 294
Query: 280 LKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQL 339
L D SG+ V TLWG+ ++ Q PV+++K +V+DF G+S+ + S+ +
Sbjct: 295 LMDMSGKVVTATLWGEDADRFDGSRQ--------PVMAIKGARVSDFGGRSLSVLSSSTV 346
Query: 340 FINPDFAEAHELREWFDSGGKNAATVSISREIAAG-GAKNEIHKTVSQIKNEGLGRSEKP 398
+NPD EA++LR WFDS G+ VSIS + G G N KT+ ++K+E LG +K
Sbjct: 347 IVNPDIPEAYKLRGWFDSEGQALDGVSISDLKSGGTGGSNTNWKTLYEVKSENLGHGDKA 406
Query: 399 DWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYL 457
D+ + A + +++ ++ Y ACP + CNKKV Q ++C++C+ E YR +
Sbjct: 407 DYFSSVATVVYLRKENCMYQACPT----QDCNKKVIDQQNGLYRCEKCDSEFPNFKYRMI 462
Query: 458 LQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFR 517
L I D WVT FQES E I+G L LK +++ F EI ++ F + FR
Sbjct: 463 LSVNIADFQENQWVTCFQESAEAIIGQSTSYLGELKD--KNEQAFEEIFQNANFRSFTFR 520
Query: 518 LKIKEELYGDEQRVKITVIRADQVNYSSESRYLL 551
+++K E Y DE R+K TV+ V+Y R L+
Sbjct: 521 IRVKLETYNDESRIKATVMDVKPVDYREYGRRLI 554
>gi|363754309|ref|XP_003647370.1| hypothetical protein Ecym_6168 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891007|gb|AET40553.1| hypothetical protein Ecym_6168 [Eremothecium cymbalariae
DBVPG#7215]
Length = 620
Score = 292 bits (747), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 163/451 (36%), Positives = 257/451 (56%), Gaps = 27/451 (5%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
I I L+PYQ W IKARV+ KGD++ ++N RG+GK+F+ + LD+ GEIR T FN
Sbjct: 188 IFAIEQLSPYQNMWTIKARVSFKGDIKTWHNQRGEGKLFNVNFLDT-SGEIRATAFNDNA 246
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
+++EI++ G+VY +SK ++P++ F++LK+ +E+ L+ + V+ C E D +PK FS
Sbjct: 247 MKYFEILQEGKVYYVSKARIQPSKPQFSNLKHPYELQLDRDTVVEECFEATD-VPKMNFS 305
Query: 235 FRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWG 294
F + + S E NS VDV+GI+ +VNP + K+G + RR + + D +G S+ + LW
Sbjct: 306 FVKLDHLSSMEANSSVDVLGIIQTVNPPFEMTAKSGKKFNRRDIVIVDDTGYSISVGLWN 365
Query: 295 ----DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHE 350
DF EG V++VKS +V DF+GKS+ S+ L NPD EA+
Sbjct: 366 EQAVDFNLPEGS------------VIAVKSARVTDFAGKSLSMGFSSTLHPNPDIPEAYA 413
Query: 351 LREWFDSGGKNAATVSISREIAAGGAKNEIHK--TVSQIKNEGLGRSEKPDWVTVRAFIT 408
++ W+++ G S+ E GA I T+ + K E LGRSEK D+ V+ I
Sbjct: 414 IKGWYNAKGSETNFHSLKTEAGESGAVKFIANRITIGRAKEENLGRSEKGDYFNVKGAIN 473
Query: 409 FIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTG 467
F+K D+F Y AC C KKV Q+ W+C++C + +RY+L I D+T
Sbjct: 474 FLKVDNFAYPAC----SSEGCQKKVIEQTDGTWRCEKCQVDHPNPKWRYMLTISILDETS 529
Query: 468 LTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGD 527
W+T F + E++LG A L LK D +F + +S N++ FR++ +E+ Y +
Sbjct: 530 QIWLTLFNDQAEKLLGMDANTLTKLKN--TDSEQFQRVTQSVQMNEFDFRIRAREDTYNE 587
Query: 528 EQRVKITVIRADQVNYSSESRYLLDLISKSF 558
E RV+ TV+ + + +ES +L + +SK+F
Sbjct: 588 ETRVRYTVVNLYPLRWKTESEFLAEELSKTF 618
>gi|307170289|gb|EFN62644.1| Replication protein A 70 kDa DNA-binding subunit [Camponotus
floridanus]
Length = 608
Score = 291 bits (746), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 168/444 (37%), Positives = 255/444 (57%), Gaps = 20/444 (4%)
Query: 117 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDR 176
PIAAL+PYQ +W IK RVT K +R ++N+RG+GKVFS DL+D + GEIR T F + D+
Sbjct: 171 PIAALSPYQNKWVIKVRVTNKSPIRTWSNSRGEGKVFSMDLID-ESGEIRCTAFRDMCDK 229
Query: 177 FYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFR 236
FY+++E+G VY IS+ LK A K FN LKN++E+ + + + C E + IP QF+F
Sbjct: 230 FYDMLEIGNVYYISRCQLKAANKQFNSLKNDYEMTMTNDTEIVPCHENIEDIPTLQFNFC 289
Query: 237 HISEIESAENNSIVDVIGIVISVNPSVPILRKN-GMETQRRILNLKDTSGRSVELTLWGD 295
IS++E+ E N I+DV+G+V + N I+++N G E +R +N+ D S V +TLWG
Sbjct: 290 SISQVENKERNDIIDVLGVVTTFNDVQHIVKRNTGQEFVKRDINIVDDSNAMVSVTLWG- 348
Query: 296 FCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFS-GKSIGTIPSTQLFINPDFAEAHELREW 354
K E D P++++K ++ +F+ GK++ + S+ L +PD EAH LR W
Sbjct: 349 -------KQAEDFDGSNNPIIAIKGARIGEFNGGKNLSLLNSSTLEKDPDLPEAHRLRGW 401
Query: 355 FDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLG-RSEKPDWVTVRAFITFIKSD 413
+ + G + S+SR + GG N T + LG + PD TV A I I+ +
Sbjct: 402 YTTVGPSENAKSLSR-VGGGGDFNAPLHTFEEATEARLGEKLNIPDSYTVMATICLIRVE 460
Query: 414 SFCYTACPLMIGDRQCNKK-VTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVT 472
+ Y ACP+ C KK + QS ++C++CN++ YR L I D TG W+T
Sbjct: 461 NSIYKACPV----ESCKKKLIDQSTGIFRCEKCNRDYPNFVYRLLASMNIADATGSRWIT 516
Query: 473 AFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVK 532
AF E E+ILG A+EL LK D+ + + F +++F L+ K E++ DE RV+
Sbjct: 517 AFSEDAEKILGMSAQELGELKE--NDNEAYMQKFGDANFKRFMFSLRAKSEVFQDEMRVR 574
Query: 533 ITVIRADQVNYSSESRYLLDLISK 556
T +NY + +L+D +SK
Sbjct: 575 HTCSSVAPLNYKTHLTHLIDKVSK 598
>gi|365990984|ref|XP_003672321.1| hypothetical protein NDAI_0J01860 [Naumovozyma dairenensis CBS 421]
gi|343771096|emb|CCD27078.1| hypothetical protein NDAI_0J01860 [Naumovozyma dairenensis CBS 421]
Length = 618
Score = 291 bits (745), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 159/456 (34%), Positives = 263/456 (57%), Gaps = 32/456 (7%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
I I L+PYQ W IKARV+ KG++++++N RGDG +F+ + LD+ GEIR T FN
Sbjct: 181 IFAIEQLSPYQNIWTIKARVSYKGEIKKWHNQRGDGSLFNVNFLDT-SGEIRATAFNENA 239
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
++F EI++ G+VY +SK L+PA+ F +L + +E+ L+ + ++ C +ED+ +PK F+
Sbjct: 240 EKFSEILQEGKVYYVSKARLQPAKPQFTNLTHPYELNLDRDTVIEECFDEDN-VPKTHFN 298
Query: 235 FRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWG 294
F + I + ENN+ VDV+G++ +VNP + + G RR +++ D SG + + LW
Sbjct: 299 FIKLDAIPNQENNTNVDVLGVIQTVNPHFELTSRAGKRFDRRDISIVDESGFEISVGLWN 358
Query: 295 ----DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHE 350
DF EG V+++K +V+DF GKS+ ++ L NP+ EA+
Sbjct: 359 QQAIDFNLPEGS------------VVAIKGVRVSDFGGKSLSMGFNSTLVPNPEIPEAYS 406
Query: 351 LREWFDSGGKNAATVSISRE-----IAAGGAKNEIHK--TVSQIKNEGLGRSEKPDWVTV 403
L+ W+DS G+N S+ +E I++ + I + T+++ + E LG+SEK D+ +V
Sbjct: 407 LKGWYDSTGRNGNFTSLKQEAGSNNISSANQEKFISQRITITRAQAENLGKSEKGDYFSV 466
Query: 404 RAFITFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQI 462
+A I+F+K D+F Y AC + CNKKV Q W+C++C + +RY+L +
Sbjct: 467 KAAISFLKVDNFAYPAC----SNENCNKKVIEQPDGTWRCEKCETNNEAPQWRYMLTISV 522
Query: 463 QDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKE 522
D+T W+T F + E++L A +L LK D F +I +S NQY FR++ +E
Sbjct: 523 MDETNQLWLTLFNDQAEQLLDIDANKLIALKE--NDPEEFTKITQSIQMNQYDFRIRARE 580
Query: 523 ELYGDEQRVKITVIRADQVNYSSESRYLLDLISKSF 558
+ Y D+ R++ TV ++NY E+ YL +S +
Sbjct: 581 DSYNDQTRIRYTVANLHKLNYKGEADYLATRLSNAL 616
>gi|449265984|gb|EMC77111.1| Replication protein A 70 kDa DNA-binding subunit, partial [Columba
livia]
Length = 607
Score = 291 bits (745), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 182/477 (38%), Positives = 273/477 (57%), Gaps = 28/477 (5%)
Query: 92 PPYQPPPN--FRNHGP-ILKNE--APARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNA 146
P Y P N + P +LK + +++PIA+LNPYQ +W I ARVT KG +R ++N+
Sbjct: 144 PKYHAPSNQFGKASAPNLLKTPGGSQVKVVPIASLNPYQSKWTICARVTQKGQIRTWSNS 203
Query: 147 RGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKN 206
RG+GK+FS +L+D + GEIR T FN D+F+ +IE+ +VY SKG+LK A K + +KN
Sbjct: 204 RGEGKLFSIELVD-ESGEIRATAFNDQADKFFPLIELNKVYYFSKGTLKSANKQYTAIKN 262
Query: 207 EWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPIL 266
++EI + ++V C ++ +P QF F IS++E+ +SIVDVIGI S I+
Sbjct: 263 DYEITFTSETSVVPC-DDAQHLPSVQFDFVSISDLENTPKDSIVDVIGICKSYEDVTKII 321
Query: 267 RK-NGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVND 325
K N E +R ++L DTSG+ V TLWG+ E D PV+++K +V+D
Sbjct: 322 VKANNREVSKRNVHLMDTSGKLVTATLWGNEA--------EQFDGSRQPVIAIKGARVSD 373
Query: 326 FSGKSIGTIPSTQLFINPDFAEAHELREW--FDSGGKNAATVSIS--REIAAGGAKNEIH 381
F G+S+ + S+ + INPD EA +LR W FDS G+ SIS R A GA N
Sbjct: 374 FGGRSLSVLSSSTVIINPDSPEAFKLRGWYEFDSEGQLLECTSISDVRGGLAAGA-NTNW 432
Query: 382 KTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRW 440
KT+ + K E LG+ +K D+ + + ++ ++ Y ACP + CNKKV Q +
Sbjct: 433 KTLFEAKAENLGQGDKADYFSCVGTVVHLRKENCMYQACP----SQDCNKKVIDQQNGLY 488
Query: 441 QCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDV 500
+C++C++E YR +L I D WVT FQ++ E ILG A L LK +++
Sbjct: 489 RCEKCDREFPNFKYRMMLLVTIADCLEYQWVTCFQDTAEFILGQKAAFLGELKE--KNEQ 546
Query: 501 RFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKS 557
F E+ ++ FN Y FR+++K E Y DE R+K T + VNY S+ L+ I ++
Sbjct: 547 AFEEVFQNANFNTYEFRIRVKLETYNDESRIKATAVDVKPVNYREYSKRLIASIRRN 603
>gi|312371186|gb|EFR19433.1| hypothetical protein AND_22425 [Anopheles darlingi]
Length = 621
Score = 291 bits (745), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 165/444 (37%), Positives = 261/444 (58%), Gaps = 22/444 (4%)
Query: 117 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDR 176
PI++L+PYQ +W IKARV +K +R ++NA+G+GK+FS D++D + GEIRVT F DR
Sbjct: 185 PISSLSPYQNKWVIKARVMSKSGIRTWSNAKGEGKLFSMDVMD-ESGEIRVTAFKEQCDR 243
Query: 177 FYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFR 236
+Y++IEV +VY ISK LKPA K +++LKN++E+ + + V C ++D S+P+ Q++F
Sbjct: 244 YYDMIEVDKVYFISKCQLKPANKQYSNLKNDYEMTMTNDTIVQECKDKDGSMPEIQYNFV 303
Query: 237 HISEIESAENNSIVDVIGIVISVNPSVPILRK-NGMETQRRILNLKDTSGRSVELTLWGD 295
I++I + E N+ VDVIG+ + V K +G E ++R L D+S +V+LTLWGD
Sbjct: 304 PIAQIANLEPNATVDVIGVCKEASEVVQFTAKTSGRELRKREATLVDSSNAAVQLTLWGD 363
Query: 296 FCNKEGQKLQEMVDVGFFPVLSVKSGKVNDF-SGKSIGTIPSTQLFINPDFAEAHELREW 354
+ Q + PV+ V+ +V++F GK++G I + + +NPD AH +R W
Sbjct: 364 ----DAQNFPASSN----PVVLVRGARVSEFGGGKTLGLIGGSVMKLNPDMEAAHRVRGW 415
Query: 355 FDSGGKNAATVSISREIAAGGAK--NEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKS 412
F++GG++A+ S+S AG N T + + LG +KPD+ V+A I IKS
Sbjct: 416 FENGGRDASLASVSARTGAGAGAGLNTEWLTFREASDRSLGAGDKPDYFQVKAMIHTIKS 475
Query: 413 DSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWV 471
+ Y ACP CNKKV Q +++C++CN E YR L+ I D T WV
Sbjct: 476 QNAVYKACP----QADCNKKVIDQDNGQYRCEKCNAEFPNFKYRLLVNMLIGDWTSNRWV 531
Query: 472 TAFQESGEEILGCPAKEL-YMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQR 530
T F E EE+ G ++E+ ML+++ ++ + + S F ++F+L+ K E Y ++ R
Sbjct: 532 TMFTELAEEVFGKSSQEIGSMLEFQTEEAEK---LFTSMCFKSFIFKLRTKVEFYNEQAR 588
Query: 531 VKITVIRADQVNYSSESRYLLDLI 554
K T + A VN+ + L+ I
Sbjct: 589 NKTTAVSAAPVNHKEYNALLIKSI 612
>gi|383854350|ref|XP_003702684.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Megachile rotundata]
Length = 591
Score = 291 bits (745), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 166/441 (37%), Positives = 252/441 (57%), Gaps = 19/441 (4%)
Query: 117 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDR 176
PI AL+PYQ RW IKARV +K D+R ++N+RG+GK+FS DL+D + GEIR T F D+
Sbjct: 158 PIVALSPYQNRWVIKARVLSKSDIRTWSNSRGEGKLFSMDLVD-ESGEIRCTAFRDQCDK 216
Query: 177 FYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFR 236
FY+++EVG+VY IS+ +LK A K FNHLKN++E+ L + + C + + IP QF+F+
Sbjct: 217 FYDMLEVGKVYYISRATLKTANKQFNHLKNDYEMTLTGDTEIIPCHDGGNEIPTLQFNFQ 276
Query: 237 HISEIESAENNSIVDVIGIVIS-VNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGD 295
IS++E+ E N +DVI IV S + + R G E ++R + L D S V TLWG
Sbjct: 277 PISDVETKEKNEYIDVIAIVKSCADLQLLTSRNTGREMKKRDIFLVDQSSTMVCFTLWG- 335
Query: 296 FCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFS-GKSIGTIPSTQLFINPDFAEAHELREW 354
K E D PV++VK +V +F+ GK++ ++ ST + INPD EAH L W
Sbjct: 336 -------KEAEEFDGSNNPVIAVKGARVGEFNGGKNLSSLSSTVIQINPDIPEAHRLHGW 388
Query: 355 FDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDS 414
F++ G N SISR GG + T + + LG + P+ V+A I I+ ++
Sbjct: 389 FNATGHNEEAKSISRTFGGGGNISGPWLTFKEAREMELG-FKGPEMYMVKATINMIRIEN 447
Query: 415 FCYTACPLMIGDRQCNKK-VTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTA 473
Y +CP C KK + Q+ + ++C++C++E YR L + D T W TA
Sbjct: 448 AVYKSCP----SESCKKKLIDQANDMYRCEKCDKEYPNYRYRLLASLSLADWTDNQWATA 503
Query: 474 FQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKI 533
F E E+ILG A+EL L+ D+ + E F +LF++++K E + DE R+K
Sbjct: 504 FSEEAEKILGITAQELGELQE--NDNDAYLEKFADATFKSFLFKIRVKLETFSDENRLKA 561
Query: 534 TVIRADQVNYSSESRYLLDLI 554
T + + ++Y + +L+ I
Sbjct: 562 TCVAVNPLDYKLYNNHLITQI 582
>gi|340522901|gb|EGR53134.1| replication factor A-like protein [Trichoderma reesei QM6a]
Length = 600
Score = 291 bits (744), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 167/450 (37%), Positives = 263/450 (58%), Gaps = 24/450 (5%)
Query: 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
A I PI AL+P+ +W IKARVT K D++ ++ G+GK+FS +LLD + GEI+ T FN
Sbjct: 166 ANIYPIEALSPFSSKWTIKARVTFKSDIKTWHKPTGEGKLFSVNLLD-ESGEIKATGFND 224
Query: 173 VVDRFYEIIEVGRVYLISK-GSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQ 231
D FY+I++ G VY IS + A+K F++L N++E+ E + ++ E+ ++P+
Sbjct: 225 QCDAFYDILQEGSVYYISSPCRVSLAKKQFSNLPNDYELAFERETVIEK-AEDQTNVPQV 283
Query: 232 QFSFRHISEIESAENNSIVDVIGIVISVNPSVPIL-RKNGMETQRRILNLKDTSGRSVEL 290
+F+F I E++S E +S VDVIG++ V I +K+G Q+R L L D +G SV +
Sbjct: 284 RFNFCTIQELQSVEKDSTVDVIGVLKEVGEVSEITSKKDGRPFQKRELTLVDDTGYSVRV 343
Query: 291 TLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHE 350
T+WG K D V++ K KV+DF GKS+ + S + ++PD +A+
Sbjct: 344 TIWG--------KTASSFDANPESVVAFKGTKVSDFGGKSLSLLSSGTMTVDPDIPDAYR 395
Query: 351 LREWFDSGGKN---AATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFI 407
L+ W+DS G+ A +++ A G K EI KT++Q+K+E LG ++ + T++A I
Sbjct: 396 LKGWYDSVGRTDTFATHQNLAGVAGATGRKEEI-KTIAQVKDENLGVDDQA-YYTIKATI 453
Query: 408 TFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQT 466
F+K DSFCY AC ++ CNKKVT WQC++C+ D+ DYRY++Q + D T
Sbjct: 454 VFVKQDSFCYPAC----SNQGCNKKVTPMPDGTWQCEKCSVSHDKPDYRYIMQLNVADHT 509
Query: 467 GLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYG 526
W++ F ++G I+G A EL LK DD +F + + +FR + K + +G
Sbjct: 510 SHQWLSCFDDTGRIIVGMSANELMELKE--NDDAKFMAAFEAVNCKKLMFRCRAKMDNFG 567
Query: 527 DEQRVKITVIRADQVNYSSESRYLLDLISK 556
D QRV+ V+ A ++Y SE L++LI +
Sbjct: 568 DTQRVRYQVMSASLIDYKSEGHKLVELIKQ 597
>gi|313666982|gb|ADR72941.1| replication protein A1 [Brachionus ibericus]
Length = 611
Score = 291 bits (744), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 164/457 (35%), Positives = 261/457 (57%), Gaps = 26/457 (5%)
Query: 114 RIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAV 173
+I I++LNPYQ +WAIKARVT K ++R Y+NARG+GK+F+ +L+DS GEIR FN
Sbjct: 168 KIFGISSLNPYQNKWAIKARVTNKSNIRTYSNARGEGKLFNVELIDS-TGEIRANGFNEQ 226
Query: 174 VDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQF 233
VD+FYE++++ +VY ISK +LK A K + L N++E+ + + C E DD +P+
Sbjct: 227 VDKFYEMLQIDQVYYISKANLKTANKQYCKLDNDYEMTFNNETVIQPCEETDD-LPRINL 285
Query: 234 SFRHISEIESAENNSIVDVIGIVISVNPSVPILRKN-GMETQRRILNLKDTSGRSVELTL 292
+ I EI + N VDVIG+V SV I+ K+ E ++R L++ D S ++ TL
Sbjct: 286 NLVKIKEISNHAANDFVDVIGVVRSVGDVTTIITKSTNRELKKRELSIVDNSECAITATL 345
Query: 293 WGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELR 352
W G++ ++ +PV+ +K K+ D++GK++ +T + INPD EAH ++
Sbjct: 346 W-------GKQAEDYDPSDSYPVILLKGAKIGDYNGKTLSVASTTVVQINPDLPEAHTVK 398
Query: 353 EWFDSGGKNAATVSISRE-IAAGGAK-------NEIHKTVSQIKNEGLGRSEKPDWVTVR 404
WF+ GG + +S + +AA GA + K + Q+K+E LG +K D+ + +
Sbjct: 399 GWFEQGGSESDIQDLSSQGMAAAGANSGGPISGHSNWKFLDQLKDEKLGMGDKADYFSTK 458
Query: 405 AFITFIKSDSFCYTACPLMIGDRQCNKKV-TQSGNRWQCDRCNQEIDECDYRYLLQAQIQ 463
A++ + K D+ Y ACP CNKK+ Q+ ++C++C + +R +L +
Sbjct: 459 AYVLYAKKDNSMYMACP----GENCNKKIFDQNDGTYRCEKCARNYPNFKWRMILNINLA 514
Query: 464 DQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEE 523
D W T FQE+ E ILG +EL LK +D +F EI F ++ F+L+ K E
Sbjct: 515 DFAESNWATCFQETAETILGIGTEELGELKN--SNDPKFDEIFSECAFKEFNFKLRAKME 572
Query: 524 LYGDEQRVKITVIRADQVNYSSESRYLLDLISKSFRK 560
Y DE+RVK++ + + V+Y+ R +L I K F K
Sbjct: 573 TYNDERRVKVSAVTVEPVDYAQSGRRILQKI-KQFAK 608
>gi|170032512|ref|XP_001844125.1| replication protein A 70 kDa DNA-binding subunit [Culex
quinquefasciatus]
gi|167872595|gb|EDS35978.1| replication protein A 70 kDa DNA-binding subunit [Culex
quinquefasciatus]
Length = 615
Score = 291 bits (744), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 163/443 (36%), Positives = 261/443 (58%), Gaps = 21/443 (4%)
Query: 117 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDR 176
PI +L+PYQ +W IKARV +K +R ++NA+G+GK+FS D++D + GEIRVT F D+
Sbjct: 180 PINSLSPYQNKWVIKARVMSKSAIRTWSNAKGEGKLFSMDIMD-ESGEIRVTAFKEQCDK 238
Query: 177 FYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFR 236
FY++IE +VY I+K LKPA K ++ LKN++E+ + + + C + D S+P Q++F
Sbjct: 239 FYDMIEADKVYYITKCQLKPANKQYSTLKNDYEMTMSNETIIQECKDVDASMPGIQYNFV 298
Query: 237 HISEIESAENNSIVDVIGIVISVNP-SVPILRKNGMETQRRILNLKDTSGRSVELTLWGD 295
IS+I + E N+++DV+G+ + + + +G E +R + + D+S +V+LTLWG
Sbjct: 299 PISQITNMEPNAMIDVVGVCKEASELNTFTAKSSGRELTKREVTMVDSSNAAVQLTLWG- 357
Query: 296 FCNKEGQKLQEMVDVGFFPVLSVKSGKVNDF-SGKSIGTIPSTQLFINPDFAEAHELREW 354
+ Q + PV+ VK +V +F GKS+G + + + +NPD AH++R W
Sbjct: 358 ---ADAQNFPTSTN----PVVVVKGARVTEFGGGKSLGLVGGSVMKLNPDIDVAHKIRGW 410
Query: 355 FDSGGKNAATVSIS-REIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSD 413
+D+GG +A S+S R AAGG+ + T + K + LG +KPD+ V+A + IKS
Sbjct: 411 YDNGGCDAVINSVSTRTGAAGGSYSTEWMTFHETKEKNLGHGDKPDYFQVKALVHNIKSG 470
Query: 414 SFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVT 472
+ Y ACP CNKKV Q +++C++CN + YR L+ + D T WVT
Sbjct: 471 NAVYKACP----QTDCNKKVVDQDNGQYRCEKCNADFPNFKYRLLVNMLVGDWTSNRWVT 526
Query: 473 AFQESGEEILGCPAKELY-MLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRV 531
F E GE++LG ++E+ L+Y +D+ +I + F ++F+L+ K E YGD R
Sbjct: 527 VFTELGEQMLGKTSQEIGDALEYN-KDEAE--QIFSNISFASFIFKLRTKVEFYGDAARN 583
Query: 532 KITVIRADQVNYSSESRYLLDLI 554
K T + A VN+ + YL+ I
Sbjct: 584 KTTAVAATPVNHKEYNAYLVKNI 606
>gi|410980231|ref|XP_003996481.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit [Felis
catus]
Length = 701
Score = 290 bits (743), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 161/441 (36%), Positives = 261/441 (59%), Gaps = 19/441 (4%)
Query: 114 RIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAV 173
+++PIA+L PYQ +W I ARVT K +R ++N+RG+GK+FS +L+D + GEIR T FN
Sbjct: 171 KVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVD-ESGEIRATAFNEQ 229
Query: 174 VDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQF 233
VD+F+ +I++ +VY ISKG+LK A K F +KN++E+ ++V C E+ +P QF
Sbjct: 230 VDKFFPLIDMNKVYYISKGTLKIANKQFTAVKNDYEMTFNNETSVVPC-EDGHHLPTVQF 288
Query: 234 SFRHISEIESAENNSIVDVIGIVISVNPSVPI-LRKNGMETQRRILNLKDTSGRSVELTL 292
F I ++E+ +S++D+IGI S + I ++ N E +R + L D SG+ V TL
Sbjct: 289 DFTAIGDLENKSKDSLIDIIGICKSYEDATKITVKSNNREVSKRDIYLMDMSGKVVTATL 348
Query: 293 WGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELR 352
WG+ ++ D PV+++K +V+DF G+S+ + S+ + +NPD EA++LR
Sbjct: 349 WGEDADR--------FDGSRQPVMAIKGARVSDFGGRSLSVLSSSTVIMNPDIPEAYKLR 400
Query: 353 EWFDSGGKNAATVSISREIAAG-GAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIK 411
WFDS G+ VSIS + G G N KT+ ++K+E LG +K D+ + A + F++
Sbjct: 401 GWFDSEGQALDGVSISDLKSGGTGGSNTNWKTLYEVKSENLGHGDKADYFSCVATVVFLR 460
Query: 412 SDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTW 470
++ Y ACP + C KKV Q ++C++C+ E YR +L A I D W
Sbjct: 461 KENCMYQACPA----QDCFKKVIDQQNGLYRCEKCDSEFPSFKYRMILSANIADFQENQW 516
Query: 471 VTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQR 530
VT FQES E I+G Y+ + + +++ F E+ ++ F ++F++++K E Y DE R
Sbjct: 517 VTCFQESAEAIIG--QTTAYIGELKEKNEQAFEEVFQNANFRTFIFKIRVKLETYNDESR 574
Query: 531 VKITVIRADQVNYSSESRYLL 551
+K TV+ V+Y + L+
Sbjct: 575 IKATVMDVKPVDYREYGKRLI 595
>gi|336367309|gb|EGN95654.1| hypothetical protein SERLA73DRAFT_186799 [Serpula lacrymans var.
lacrymans S7.3]
gi|336380027|gb|EGO21181.1| hypothetical protein SERLADRAFT_476039 [Serpula lacrymans var.
lacrymans S7.9]
Length = 601
Score = 290 bits (743), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 162/467 (34%), Positives = 261/467 (55%), Gaps = 22/467 (4%)
Query: 92 PPYQPPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGK 151
P +P P+ +N K I PI L+PYQ W IKARVT K ++R ++N RG+GK
Sbjct: 147 PQTKPQPSRQNQAA--KGGRQNSIYPIEGLSPYQNNWTIKARVTQKSEIRTWSNQRGEGK 204
Query: 152 VFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIF 211
+F+ L+D + GEIR T FNAVVD YE +E G+VYLISK + A+K F++++N++E+
Sbjct: 205 LFNVTLMD-ESGEIRATGFNAVVDELYEKLEEGKVYLISKARVNLAKKKFSNVQNDYELS 263
Query: 212 LEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGM 271
LE + V+ C E +P +++F +SE+E+ +S DV IV V P I+ K
Sbjct: 264 LEKHTEVEECLET-SGLPMIKYNFISLSELEAQPKDSTCDVAAIVKEVGPLGEIVSKTNR 322
Query: 272 ETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSI 331
+R L + D SG SV LTLWG K E + PV++ K KV DF G+S+
Sbjct: 323 TIPKRELTIVDKSGFSVRLTLWG--------KQAEQYNSEGHPVIAFKGVKVGDFGGRSL 374
Query: 332 GTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKT----VSQI 387
I ++ + I+PD E+H LR W+DS G A S S ++ G +++ +S +
Sbjct: 375 SMISTSMMSIDPDIDESHLLRGWYDSIGVEQAFQSHSNANSSMGMSTVFNRSEMRHLSDV 434
Query: 388 KNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQ 447
K LG S+K D+ + R+ I IK ++ Y ACP + CNKKVT G+ W+C++C +
Sbjct: 435 KESQLGMSDKTDFFSCRSTIMHIKGENISYPACPT----QGCNKKVTDIGDGWRCEKCEK 490
Query: 448 EIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIR 507
+ ++RY++ + D + W+ F ++G + G A +L +K +D+ + ++
Sbjct: 491 TFERPEHRYIISLAVADWSTQAWLQGFNDAGVAVFGKSADDLMEIKE--RDEAEYNTVMA 548
Query: 508 SRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLI 554
+ F + K++ Y D+ RV+ +++ + V+Y E++YL DL+
Sbjct: 549 KASGATFNFTCRAKQDTYNDQTRVRYGIVKLNPVDYREEAKYLRDLL 595
>gi|195037625|ref|XP_001990261.1| GH19242 [Drosophila grimshawi]
gi|193894457|gb|EDV93323.1| GH19242 [Drosophila grimshawi]
Length = 602
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 168/440 (38%), Positives = 250/440 (56%), Gaps = 22/440 (5%)
Query: 117 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDR 176
PIA+L+PYQ +W IKARVT+K +R ++NARG+GK+FS DL+D + GEIR T F D+
Sbjct: 167 PIASLSPYQNKWVIKARVTSKTAIRTWSNARGEGKLFSMDLMD-ESGEIRATAFKEQCDK 225
Query: 177 FYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDD-SIPKQQFSF 235
FY++IEV VY SK LKPA K ++ LKN++E+ + V LC + DD IP+ +F
Sbjct: 226 FYDLIEVDNVYFFSKCQLKPANKQYSQLKNDYEMTFTGETMVQLCDDADDGGIPEIKFDL 285
Query: 236 RHISEIESAENNSIVDVIGIVISVNPSVPIL-RKNGMETQRRILNLKDTSGRSVELTLWG 294
IS++ S EN + VD IGI V R E ++R L L D S ++ LTLWG
Sbjct: 286 VPISQVASMENKAAVDTIGICKDVGEVQTFTSRTTNKEFKKRELTLVDMSNAAINLTLWG 345
Query: 295 DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFS-GKSIGTIPSTQLFINPDFAEAHELRE 353
D +Q PV+ VK ++N+F+ GKS+ + L INPD EAH+LR
Sbjct: 346 DEAVNFDGHVQ--------PVILVKGSRINEFNGGKSLSMGGGSILKINPDIPEAHKLRG 397
Query: 354 WFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSD 413
WFD+GG + + +S GG+ + T+ + LG +KPD+ +A + +K +
Sbjct: 398 WFDNGGGDNISNLVSAR-TGGGSFSTDWVTLKDARIRNLGSGDKPDYFQCKAVVHIVKQE 456
Query: 414 SFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVT 472
+ Y +CP +CNKKV GN +++C+RCN YR L+ I D T WVT
Sbjct: 457 NAFYKSCP----QTECNKKVVDEGNGQYRCERCNAAYPNFKYRLLINMSIGDWTSNRWVT 512
Query: 473 AFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRV-FNQYLFRLKIKEELYGDEQRV 531
F E+GE++L A+E + L++D E + + F+ ++F+L+ K E+YGD R
Sbjct: 513 CFNEAGEQLLKHTAQE---VGEALENDPTSAEKMFGDINFSSFIFKLRCKNEMYGDMTRN 569
Query: 532 KITVIRADQVNYSSESRYLL 551
K+TV +NY +++L+
Sbjct: 570 KLTVQSMTPINYKEYNKHLI 589
>gi|358395596|gb|EHK44983.1| hypothetical protein TRIATDRAFT_139326 [Trichoderma atroviride IMI
206040]
Length = 600
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 170/468 (36%), Positives = 265/468 (56%), Gaps = 27/468 (5%)
Query: 98 PNFRNHGPI---LKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFS 154
P + H P A A I PI AL+P+ +W IKARVT K D++ ++ G+GK+FS
Sbjct: 148 PQMQQHQPAPSRSATHAGANIYPIEALSPFSHKWTIKARVTFKSDIKTWHKPTGEGKLFS 207
Query: 155 FDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISK-GSLKPAQKNFNHLKNEWEIFLE 213
+LLD + GEI+ T FN D FY++++ G VY IS + A+K F++L N++E+ E
Sbjct: 208 VNLLD-ESGEIKATGFNDQCDAFYDLLQEGSVYYISTPCRVALAKKQFSNLSNDYELTFE 266
Query: 214 ATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPIL-RKNGME 272
+ ++ E+ ++P+ +F+F I E++S E +S VDVIG++ V I +K+G
Sbjct: 267 RETVIEK-AEDQTNVPQLRFNFCSIQELQSVEKDSTVDVIGVLKEVAEVSEITSKKDGRP 325
Query: 273 TQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIG 332
Q+R L L D +G SV +T+WG N D V++ K KV+DF GKS+
Sbjct: 326 FQKRELTLVDDTGYSVRVTIWGKTANG--------FDANPESVVAFKGTKVSDFGGKSLS 377
Query: 333 TIPSTQLFINPDFAEAHELREWFDSGGKN---AATVSISREIAAGGAKNEIHKTVSQIKN 389
+ S + +NPD +A+ L+ W+DS G+ A +++ A G K++I KT+SQ+K+
Sbjct: 378 LLSSGTMTVNPDIPDAYRLKGWYDSAGRTDTFATHQNLAGVAGATGRKDDI-KTISQVKD 436
Query: 390 EGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQE 448
E LG ++ + T++A I F+K DSFCY AC + CNKKVT + W C++CN
Sbjct: 437 ENLGVDDQA-YYTIKATIVFVKQDSFCYPACST----QGCNKKVTSMPDGTWHCEKCNVS 491
Query: 449 IDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRS 508
D DYRY+L + D T W++ F ++G I+G A EL LK DD +F +
Sbjct: 492 HDRPDYRYILNLNVADHTSHQWLSCFDDTGRIIVGMSANELMELKE--NDDAKFMAAFEA 549
Query: 509 RVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
+ FR + K + +GD QRV+ V+ A ++Y +E L++LI +
Sbjct: 550 VNCKKLTFRCRAKLDHFGDTQRVRYQVLSAALMDYKTEGDKLVELIKQ 597
>gi|15239494|ref|NP_200908.1| Replication factor-A protein 1-like protein [Arabidopsis thaliana]
gi|10177323|dbj|BAB10649.1| replication protein A1 [Arabidopsis thaliana]
gi|28393124|gb|AAO41995.1| putative RNA helicase [Arabidopsis thaliana]
gi|332010026|gb|AED97409.1| Replication factor-A protein 1-like protein [Arabidopsis thaliana]
Length = 629
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 168/463 (36%), Positives = 273/463 (58%), Gaps = 17/463 (3%)
Query: 102 NHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSD 161
N P + R+ P+ +LNPYQG W IK RVT KG +R Y NARG+G VF+ +L D +
Sbjct: 168 NAAPAARMAMTRRVHPLVSLNPYQGNWTIKVRVTNKGVMRNYKNARGEGCVFNVELTDEE 227
Query: 162 GGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLC 221
G +I+ T FN +F++ ++G+VY IS+GSLK A K F ++N++E+ L S V+
Sbjct: 228 GTQIQATMFNDAARKFFDRFQLGKVYYISRGSLKLANKQFKTVQNDYEMTLNENSEVEEA 287
Query: 222 TEEDDSIPKQQFSFRHISEIESAENNS-IVDVIGIVISVNPSVPILRKNGMET-QRRILN 279
+ E+ IP+ +F+F I E+ N ++D+IG+V SV+P++ I R+ E +R +
Sbjct: 288 SSEEMFIPETKFNFVPIEELGLYVNQKELIDLIGVVQSVSPTMSIRRRTDNEMIPKRDIT 347
Query: 280 LKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQL 339
L D S ++V ++LW D GQ+L +M D PV+++KS KV DF G S+ TI + +
Sbjct: 348 LADESRKTVVVSLWNDLATGIGQELLDMADQS--PVIAIKSLKVGDFQGVSLSTISRSNV 405
Query: 340 FINPDFAEAHELREWFDSGGKNAATVSISREI---AAGGAKNEIHKTV--SQIKNEGLGR 394
INP+ EA +L+ WFDS GK + SI + A G+++ V S I +
Sbjct: 406 VINPESPEAKKLKSWFDSEGKEISMSSIGSGMSPSAKNGSRSLYTDRVLLSHITSNPSLF 465
Query: 395 SEKPDWVTVRAFITFIKSD-SFCYTACPLMIGDRQCNKKVTQSGNR-WQCDRCNQEIDEC 452
EKP + + RA+I+FIK D + Y AC + CNKKVT++ + + C+ C ++ +EC
Sbjct: 466 EEKPVFFSTRAYISFIKPDQTMWYQAC------KTCNKKVTEALDSGYWCEGCQRKYEEC 519
Query: 453 DYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFN 512
RY++ ++ D +G TW+++F + E+ILGC A EL LK E + + ++ ++
Sbjct: 520 SLRYIMAVKVTDSSGETWISSFNDEAEKILGCSADELNKLKSEEGEVNEYQTKLKEATWS 579
Query: 513 QYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLIS 555
++FR+ + + Y E+R ++TV +++++E+R LL IS
Sbjct: 580 SHVFRVSVTQNEYNGEKRQRVTVKGVAPLDFAAETRLLLQDIS 622
>gi|357603407|gb|EHJ63750.1| replication protein A1 [Danaus plexippus]
Length = 598
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 166/441 (37%), Positives = 253/441 (57%), Gaps = 19/441 (4%)
Query: 117 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDR 176
PIA+L+PYQ +W IKARV K +R ++NA+G+GK+FS DL D + GEIR T F D+
Sbjct: 166 PIASLSPYQNKWVIKARVMNKTAIRTWSNAKGEGKLFSMDLCD-ESGEIRATAFKNECDK 224
Query: 177 FYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFR 236
FY++I++ +VY IS+ LK A K + LKN++E+ A + V C EE +S+P ++ F
Sbjct: 225 FYDMIQIDKVYYISRCQLKTANKQYTTLKNDYEMTFTADTVVSECMEESNSVPSIKYDFM 284
Query: 237 HISEIESAENNSIVDVIGIVISVNPSVPILRKN-GMETQRRILNLKDTSGRSVELTLWGD 295
IS+I ++I+DVIG+ S + + K+ G ++R L D+SG ++ LTLWG
Sbjct: 285 PISDIADKGPDTILDVIGVCKSASDIQELTAKSTGKLLKKREATLVDSSGGAITLTLWG- 343
Query: 296 FCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSG-KSIGTIPSTQLFINPDFAEAHELREW 354
E +K D PV++VK ++ +F+G KS+ + ST + + PD EAH LR W
Sbjct: 344 ---AEAEKF----DGSSNPVVAVKGARLAEFNGSKSLSCLASTIVRVQPDVEEAHRLRGW 396
Query: 355 FDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDS 414
+D+GG + A V IS + GG E T ++ + LG +K D+ ++ +TF +D+
Sbjct: 397 YDNGGDSMAMVHISARVGQGGGNAE-WMTFAEAEERRLGTGDKADYFSLLGVLTFTFADN 455
Query: 415 FCYTACPLMIGDRQCNKK-VTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTA 473
Y ACP QCNKK V Q ++C++CN+E YR LL A + D TG VTA
Sbjct: 456 AVYKACP----QEQCNKKLVDQQNGLYRCEKCNREYPNYKYRLLLGATVSDPTGDQRVTA 511
Query: 474 FQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKI 533
F ES E +LG A+E+ L D +G+++ F ++F+ + K E Y DE ++K
Sbjct: 512 FNESAEVMLGRSAEEVGRLSD--YDKAEYGQLLDHVKFKTFVFKFRTKIETYSDEAKLKT 569
Query: 534 TVIRADQVNYSSESRYLLDLI 554
V+ A V+Y + L+ I
Sbjct: 570 VVMSAQPVDYRDANARLVKSI 590
>gi|297797049|ref|XP_002866409.1| hypothetical protein ARALYDRAFT_496254 [Arabidopsis lyrata subsp.
lyrata]
gi|297312244|gb|EFH42668.1| hypothetical protein ARALYDRAFT_496254 [Arabidopsis lyrata subsp.
lyrata]
Length = 631
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 169/464 (36%), Positives = 275/464 (59%), Gaps = 19/464 (4%)
Query: 102 NHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSD 161
N P + R+ P+ +LNPYQG W IK RVT KG +R Y NARG+G VF+ +L D +
Sbjct: 170 NAAPAARMAMTRRVHPLVSLNPYQGNWTIKVRVTNKGVMRNYKNARGEGCVFNVELTDEE 229
Query: 162 GGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLC 221
G +I+ T FN +FY+ ++G+VY IS+GSLK A K F ++N++E+ L S V+
Sbjct: 230 GTQIQATMFNDAARKFYDRFQLGKVYYISRGSLKLANKQFKTVQNDYEMTLNENSEVEEA 289
Query: 222 TEEDDSIPKQQFSFRHISEIESAENNS-IVDVIGIVISVNPSVPILRKNGMET-QRRILN 279
+ E+ IP+ +F+F I E+ N ++D+IG+V SV+P++ I R+ E +R +
Sbjct: 290 SSEEMFIPETKFNFVPIEELGLYVNQKELIDLIGVVQSVSPTMSIRRRTDNEMIPKRDIT 349
Query: 280 LKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQL 339
L D S ++V ++LW D GQ+L +M D PV+++KS KV DF G S+ TI + +
Sbjct: 350 LADESKKTVVVSLWNDLATGIGQELLDMADKS--PVVAIKSLKVGDFQGVSLSTISRSNV 407
Query: 340 FINPDFAEAHELREWFDSGGKNAATVSISREI---AAGGAKNEIHKTV--SQI-KNEGLG 393
INP+ EA +L+ WFDS GK + SI + + G+++ V S I N LG
Sbjct: 408 VINPESPEAKKLKSWFDSEGKEISMSSIGSGMSPSSKNGSRSMYTDRVLLSHITSNPSLG 467
Query: 394 RSEKPDWVTVRAFITFIKSD-SFCYTACPLMIGDRQCNKKVTQSGNR-WQCDRCNQEIDE 451
EKP + + RA+I+FIK D + Y AC + CNKKVT++ + + C+ C ++ +E
Sbjct: 468 E-EKPVFFSTRAYISFIKPDQTMWYQAC------KTCNKKVTEALDSGYWCEGCQKKYEE 520
Query: 452 CDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVF 511
C RY++ ++ D +G TW+++F + E+ILGC A +L L+ E + + ++ +
Sbjct: 521 CSLRYIMAVKVTDSSGETWISSFNDEAEKILGCSADDLNKLRSEGGEVNEYQTKLKEATW 580
Query: 512 NQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLIS 555
+ ++FR+ + + Y E+R ++TV +++++E+R LL IS
Sbjct: 581 SSHVFRVSVSQNEYNGEKRQRVTVKGVAPLDFAAETRLLLQDIS 624
>gi|406602762|emb|CCH45720.1| Replication protein A 70 kDa DNA-binding subunit [Wickerhamomyces
ciferrii]
Length = 608
Score = 289 bits (740), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 152/470 (32%), Positives = 268/470 (57%), Gaps = 26/470 (5%)
Query: 87 QPTVQPPYQPPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNA 146
QP P QP + + + P+ I I L+PYQ W IKARV+ KG++R ++N
Sbjct: 152 QPKQSIP-QPQSSTNTNKASSNQKKPSNIYAIDQLSPYQNIWTIKARVSFKGEMRTWSNQ 210
Query: 147 RGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKN 206
RG+GK+F+ +LLD + EIR T FN ++FY +++ G+ Y +SK ++P++ F++LK+
Sbjct: 211 RGEGKLFNVNLLD-ETDEIRATAFNDNAEKFYNLLQEGKAYYVSKARIQPSRPQFSNLKH 269
Query: 207 EWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPIL 266
+E+ L+ + ++ C + DD +PK F F +++I+ E +SI+DV+G++ VNP I
Sbjct: 270 PYELQLDRDTVIEECFDADD-VPKLSFDFVKLNKIQDLEADSIIDVVGVIKEVNPHFQIT 328
Query: 267 RKNGMETQRRILNLKDTSGRSVELTLWG----DFCNKEGQKLQEMVDVGFFPVLSVKSGK 322
K G RR + + D S ++ + LW +F EG V+++K K
Sbjct: 329 SKAGRAYDRRDITVVDDSQFAISVGLWNKTALEFDTPEGT------------VIAIKGAK 376
Query: 323 VNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHK 382
V+DF+GK++ PS + NPD EA+ ++ W+D+ G+N ++ E+ E K
Sbjct: 377 VSDFNGKTLSITPSGTITTNPDAPEAYAIKGWYDAQGRNENFQTLKTELGTRKTSIEERK 436
Query: 383 TVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQ 441
T+ ++N LG EKPD+ T+++ + F+K+D+F Y AC CN+KV Q W+
Sbjct: 437 TIGDVQNLELGLGEKPDYFTIKSSVNFLKTDNFSYPAC----SSEGCNRKVIEQHDGTWR 492
Query: 442 CDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVR 501
C++C+ YRY+L + D TG WVT F++ + +LG A +L +KY+ +D+
Sbjct: 493 CEKCDINHAVPLYRYILTISVVDPTGQLWVTLFEDQAKALLGYSANDL--VKYKEEDNSL 550
Query: 502 FGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLL 551
F I+ N++ FR++ +++ Y + R++ + +++++S+E+ YL+
Sbjct: 551 FTSIVSKIQMNEFEFRIRARQDNYNGQVRIRYNAVNVNKIDFSNEAEYLV 600
>gi|195444358|ref|XP_002069830.1| GK11360 [Drosophila willistoni]
gi|194165915|gb|EDW80816.1| GK11360 [Drosophila willistoni]
Length = 605
Score = 288 bits (738), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 168/440 (38%), Positives = 251/440 (57%), Gaps = 23/440 (5%)
Query: 117 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDR 176
PIA+L+PYQ +W IKARVTAK +R ++N RG+GK+FS DL+D + GEIR T F D+
Sbjct: 171 PIASLSPYQNKWVIKARVTAKTAIRTWSNPRGEGKLFSMDLMD-ESGEIRATAFKEQCDK 229
Query: 177 FYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFR 236
FY++I+V VY SK LKPA K ++ LKN++E+ + V +C +E+DSIP+ ++
Sbjct: 230 FYDLIQVDGVYYFSKCQLKPANKQYSQLKNDYEMTFTGETMVQMCEDEEDSIPEIKYDLV 289
Query: 237 HISEIESAENNSIVDVIGIVISVNPSVPIL-RKNGMETQRRILNLKDTSGRSVELTLWGD 295
IS++ + EN + VD IGI V R E ++R L L D S ++ LTLWGD
Sbjct: 290 PISQVSNMENKAAVDTIGICKEVGELQTFTSRTTNKEFKKRDLTLVDMSNSAISLTLWGD 349
Query: 296 FCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLF-INPDFAEAHELREW 354
+Q PV+ VK ++N+F+G ++ + INPD EAH+LR W
Sbjct: 350 DAVNFDGHVQ--------PVILVKGTRINEFNGGKSLSLGGGSIMKINPDIPEAHKLRGW 401
Query: 355 FDS-GGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSD 413
FD+ GG N A + +R GG + T+ + LG +KPD+ +A + +K +
Sbjct: 402 FDNGGGDNIANMVSAR--TGGGTFSADWLTLKDARERNLGSGDKPDYFQCKAVVHIVKQE 459
Query: 414 SFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVT 472
+ Y ACP +CNKKV GN R++C+RCNQ+ YR L+ I D T WVT
Sbjct: 460 NAFYKACP----QAECNKKVVDEGNDRYRCERCNQDFPNFKYRLLINLSIGDWTSNRWVT 515
Query: 473 AFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRV-FNQYLFRLKIKEELYGDEQRV 531
F E GE++L A+E + L++D E + S + F+ ++F+L+ K E+YGD R
Sbjct: 516 CFSEIGEQLLKHTAQE---VGEALENDPPKAEQMFSGMNFSAHIFKLRCKNEVYGDMTRN 572
Query: 532 KITVIRADQVNYSSESRYLL 551
K+TV +NY +++L+
Sbjct: 573 KLTVQSVSPINYKDYNKHLI 592
>gi|50302901|ref|XP_451388.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49640519|emb|CAH02976.1| KLLA0A08844p [Kluyveromyces lactis]
Length = 621
Score = 288 bits (737), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 161/476 (33%), Positives = 265/476 (55%), Gaps = 24/476 (5%)
Query: 88 PTVQPPYQPPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNAR 147
P QP P N +N P I I ++PYQ W IKARV+ KGDL+++ N R
Sbjct: 165 PAPQPRSVPKAKSNNGSS--QNSRP--IFAIEQISPYQNNWTIKARVSFKGDLKKWQNNR 220
Query: 148 GDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNE 207
G+G + + +LLDS GEIR T FN +F EI++ G+ Y +SK ++PA+ F++LK+
Sbjct: 221 GEGHILNVNLLDS-SGEIRATAFNDNAIKFNEILQEGKAYFVSKARVQPAKPQFSNLKHP 279
Query: 208 WEIFLEATSTVDLCTEED-DSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPIL 266
+E+ LE V+ C ED + +P+ F+F ++++ + E N+ +DV+GI+ SV P +
Sbjct: 280 YELSLERDCVVEECMNEDANDVPEMHFNFIKLNDVNNVEKNTAIDVVGILKSVGPHFELA 339
Query: 267 RKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDF 326
K+G + RR + + D SG + L LWG+ Q ++ + G V+++K +V DF
Sbjct: 340 AKSGKKFDRRDVEIVDDSGACISLGLWGE------QAIKFNLPEG--SVVALKGVRVTDF 391
Query: 327 SGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEI---HKT 383
+GKS+ ++ LF NPD EA+ L+ W+D+ N ++ E G ++ T
Sbjct: 392 NGKSLSMGNTSSLFANPDIQEAYTLKGWYDANASNTTFKALKTESGGGADTSKFIADRTT 451
Query: 384 VSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKV-TQSGNRWQC 442
+++ LGRSEK D+ +V+A ++F+K D+F Y AC + C KKV QS W+C
Sbjct: 452 IARAIESNLGRSEKGDYFSVKAAVSFLKVDNFAYPACL----NEGCQKKVIMQSDGTWRC 507
Query: 443 DRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRF 502
++C+ YRY+L I DQTG W+T F + E+++G A EL LK ++ F
Sbjct: 508 EKCDMNHPHPKYRYMLTISIMDQTGQIWLTLFNDQAEQLVGVSANELTELKE--NNNQAF 565
Query: 503 GEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKSF 558
+ + N+Y FR++ +E+ Y +E R++ TV + + +E+ +L + K+
Sbjct: 566 VALTQKVQMNEYDFRIRAREDNYNNETRIRYTVANLHDLRWKAEADFLAAELLKAL 621
>gi|195390608|ref|XP_002053960.1| GJ23056 [Drosophila virilis]
gi|194152046|gb|EDW67480.1| GJ23056 [Drosophila virilis]
Length = 609
Score = 287 bits (735), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 168/440 (38%), Positives = 249/440 (56%), Gaps = 22/440 (5%)
Query: 117 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDR 176
PI++L+PYQ +W IKARVT+K +R ++NARG+GK+FS DL+D + GEIR T F D+
Sbjct: 174 PISSLSPYQNKWVIKARVTSKTAIRTWSNARGEGKLFSMDLMD-ESGEIRATAFKEQCDK 232
Query: 177 FYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDD-SIPKQQFSF 235
FY++IEV VY SK LKPA K ++ LKN++E+ + V C +ED+ IP+ +F
Sbjct: 233 FYDLIEVDNVYFFSKCQLKPANKQYSQLKNDYEMTFTNETMVQPCDDEDNGGIPEIKFDL 292
Query: 236 RHISEIESAENNSIVDVIGIVISVNPSVPIL-RKNGMETQRRILNLKDTSGRSVELTLWG 294
IS++ + EN VD IGI V R E ++R L L D S +V LTLWG
Sbjct: 293 VPISQVANMENKEAVDTIGICKEVGELQAFTSRTTNKEFKKRELTLVDMSNAAVTLTLWG 352
Query: 295 DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFS-GKSIGTIPSTQLFINPDFAEAHELRE 353
D +Q PV+ VK ++N+F+ GKS+ + L INPD EAH+LR
Sbjct: 353 DEAVNFDGHVQ--------PVILVKGSRINEFNGGKSLSMGGGSILKINPDIPEAHKLRG 404
Query: 354 WFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSD 413
WFD+GG + + +S GG+ + T+ + LG +KPD+ +A + +K +
Sbjct: 405 WFDNGGGDNISNMVSAR-TGGGSFSTDWVTLKDARLRNLGSGDKPDYFQCKAVVHIVKQE 463
Query: 414 SFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVT 472
+ Y ACP CNKKV GN +++C+RCN YR L+ I D T WVT
Sbjct: 464 NAFYKACP----QADCNKKVVDEGNGQYRCERCNAAFPNFKYRLLINMSIGDWTSNRWVT 519
Query: 473 AFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRV-FNQYLFRLKIKEELYGDEQRV 531
F E+GE++L A+E + L++D E + + + F+ Y+F+L+ K E+YGD R
Sbjct: 520 CFSETGEQLLKHNAQE---VGEALENDPAAAEKMFADINFSSYIFKLRCKNEMYGDMTRN 576
Query: 532 KITVIRADQVNYSSESRYLL 551
K+TV +NY +++L+
Sbjct: 577 KLTVQSMTPINYKEYNKHLI 596
>gi|45198511|ref|NP_985540.1| AFL008Wp [Ashbya gossypii ATCC 10895]
gi|44984462|gb|AAS53364.1| AFL008Wp [Ashbya gossypii ATCC 10895]
Length = 694
Score = 287 bits (735), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 162/454 (35%), Positives = 259/454 (57%), Gaps = 33/454 (7%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
I I L+PYQ W IKARV+ KGD++ ++N RG+GK+F+ + LD+ GEIR T FN
Sbjct: 262 IFAIEQLSPYQNMWTIKARVSFKGDIKTWHNQRGEGKLFNVNFLDT-SGEIRATAFNDNA 320
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
+++EI++ G+VY +SK ++PA+ F++LK+ +E+ L+ + V+ C E D +PK FS
Sbjct: 321 LKYFEILQEGKVYYVSKARIQPAKPQFSNLKHPYELQLDRDTVVEECFEAAD-VPKMNFS 379
Query: 235 FRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWG 294
F + +I S E NS VD++G++ +VNP ++ K+G + RR + + D +G SV + LW
Sbjct: 380 FIKLDQISSMEANSNVDILGVIQTVNPPFEMIAKSGKKFNRRDIVIVDETGYSVNVGLWN 439
Query: 295 ----DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHE 350
DF EG V++VKS +V DF GKS+ S+ L NPD EA+
Sbjct: 440 EQAVDFNLPEGS------------VIAVKSVRVTDFGGKSLSMGFSSTLHPNPDIPEAYA 487
Query: 351 LREWFDSGGKNAATVSISREIAAGGAKNEIHK-----TVSQIKNEGLGRSEKPDWVTVRA 405
++ W+ S G + S+ E GG +N + T+ + K++ LGRS+K D+ VR
Sbjct: 488 IKGWYSSKGTSTTFHSLKME---GGDRNSMRYVADRITIGKAKDDNLGRSDKGDYFNVRG 544
Query: 406 FITFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQD 464
+ F+K D+F Y AC C KKV Q+ W+C++C + +RY+L A I D
Sbjct: 545 AVNFLKVDNFAYPAC----STEGCQKKVIEQTDGTWRCEKCQVDHPAPKWRYMLTASILD 600
Query: 465 QTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEEL 524
+T W+T F + E++L A L LK D +F ++ +S N+Y FR++ +E+
Sbjct: 601 ETSQIWITLFNDQAEKLLSMDANTLTELKN--TDPEKFQKVTQSVQMNEYDFRVRAREDT 658
Query: 525 YGDEQRVKITVIRADQVNYSSESRYLLDLISKSF 558
Y +E R++ TV + + E+ YL ++K+F
Sbjct: 659 YNEETRIRYTVTNLYPLRWKVEADYLAGELTKAF 692
>gi|374108769|gb|AEY97675.1| FAFL008Wp [Ashbya gossypii FDAG1]
Length = 694
Score = 287 bits (735), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 162/454 (35%), Positives = 259/454 (57%), Gaps = 33/454 (7%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
I I L+PYQ W IKARV+ KGD++ ++N RG+GK+F+ + LD+ GEIR T FN
Sbjct: 262 IFAIEQLSPYQNMWTIKARVSFKGDIKTWHNQRGEGKLFNVNFLDT-SGEIRATAFNDNA 320
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
+++EI++ G+VY +SK ++PA+ F++LK+ +E+ L+ + V+ C E D +PK FS
Sbjct: 321 LKYFEILQEGKVYYVSKARIQPAKPQFSNLKHPYELQLDRDTVVEECFEAAD-VPKMNFS 379
Query: 235 FRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWG 294
F + +I S E NS VD++G++ +VNP ++ K+G + RR + + D +G SV + LW
Sbjct: 380 FIKLDQISSMEANSNVDILGVIQTVNPPFEMIAKSGKKFNRRDIVIVDETGYSVNVGLWN 439
Query: 295 ----DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHE 350
DF EG V++VKS +V DF GKS+ S+ L NPD EA+
Sbjct: 440 EQAVDFNLPEGS------------VIAVKSVRVTDFGGKSLSMGFSSTLHPNPDIPEAYA 487
Query: 351 LREWFDSGGKNAATVSISREIAAGGAKNEIHK-----TVSQIKNEGLGRSEKPDWVTVRA 405
++ W+ S G + S+ E GG +N + T+ + K++ LGRS+K D+ VR
Sbjct: 488 IKGWYSSKGTSTTFHSLKME---GGDRNSMRYVADRITIGKAKDDNLGRSDKGDYFNVRG 544
Query: 406 FITFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQD 464
+ F+K D+F Y AC C KKV Q+ W+C++C + +RY+L A I D
Sbjct: 545 AVNFLKVDNFAYPAC----STEGCQKKVIEQTDGTWRCEKCQVDHPAPKWRYMLTASILD 600
Query: 465 QTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEEL 524
+T W+T F + E++L A L LK D +F ++ +S N+Y FR++ +E+
Sbjct: 601 ETSQIWITLFNDQAEKLLSMDANTLTELKN--TDPEKFQKVTQSVQMNEYDFRVRAREDT 658
Query: 525 YGDEQRVKITVIRADQVNYSSESRYLLDLISKSF 558
Y +E R++ TV + + E+ YL ++K+F
Sbjct: 659 YNEETRIRYTVTNLYPLRWKVEADYLAGELTKAF 692
>gi|157133641|ref|XP_001662954.1| replication factor a 1, rfa1 [Aedes aegypti]
gi|108870757|gb|EAT34982.1| AAEL012826-PA [Aedes aegypti]
Length = 619
Score = 287 bits (734), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 161/441 (36%), Positives = 253/441 (57%), Gaps = 18/441 (4%)
Query: 117 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDR 176
PI +L+PYQ +W I+ARV +K +R ++NA+G+GK+FS D++D + GEIRVT F D+
Sbjct: 185 PINSLSPYQNKWVIRARVMSKSGIRTWSNAKGEGKLFSMDVMD-ESGEIRVTAFKDQCDK 243
Query: 177 FYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFR 236
+Y++IEV +VY I+K LKPA K ++ LKN++E+ + + V C + S+P Q++F
Sbjct: 244 YYDMIEVDKVYYITKCQLKPANKQYSTLKNDYEMTMTNDTIVQECKDAGSSMPSIQYNFV 303
Query: 237 HISEIESAENNSIVDVIGIVISVNPSVPIL-RKNGMETQRRILNLKDTSGRSVELTLWGD 295
IS+I + E N+++DVIG+ + R +G E ++R + L D+S +V LTLWGD
Sbjct: 304 PISQIGNMEPNAMIDVIGVCKEAGEVMQFTARSSGRELKKREVTLVDSSNAAVSLTLWGD 363
Query: 296 FCNKEGQKLQEMVDVGFFPVLSVKSGKVNDF-SGKSIGTIPSTQLFINPDFAEAHELREW 354
+ Q + PVL +K +V +F GKS+G + S+ L NPD EAH++R W
Sbjct: 364 ----DAQNFNATNN----PVLVIKGARVTEFGGGKSLGLVASSVLKTNPDNEEAHKIRGW 415
Query: 355 FDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDS 414
+ GG + S+S AG + T + K + LG +KPD+ V+A I IKS +
Sbjct: 416 YLGGGCDNVVNSVSTRTGAGAGYSTEWITFHEAKEKNLGAGDKPDYFQVKALIHNIKSAN 475
Query: 415 FCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTA 473
Y ACP +CNKKV Q +++C++CN + YR L+ + D T WVT
Sbjct: 476 AVYKACP----QAECNKKVIDQDNGQYRCEKCNADFPNFKYRLLVNMLVGDWTSNRWVTV 531
Query: 474 FQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKI 533
F + E++LG ++++ +D+ +I + F Y+F+L+ K E YGD R K
Sbjct: 532 FTDLAEQMLGKSSQDIGDALEFNKDEAE--QIFSAINFKSYVFKLRTKVEFYGDSSRNKT 589
Query: 534 TVIRADQVNYSSESRYLLDLI 554
T + A+ VN+ + YL+ I
Sbjct: 590 TAVAANPVNHKEYNAYLIKNI 610
>gi|410075269|ref|XP_003955217.1| hypothetical protein KAFR_0A06470 [Kazachstania africana CBS 2517]
gi|372461799|emb|CCF56082.1| hypothetical protein KAFR_0A06470 [Kazachstania africana CBS 2517]
Length = 618
Score = 287 bits (734), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 160/458 (34%), Positives = 266/458 (58%), Gaps = 34/458 (7%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
I I L+PYQ W IKARV+ KG+++ +NN +G GK+F+ + LD+ GEIR T FN
Sbjct: 179 IFAIEQLSPYQNIWTIKARVSYKGEIKEWNNQKGSGKLFNANFLDT-SGEIRATAFNEWA 237
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
++ EI++ G+VY ISK L+PA+ F++L + +E+ L+ + ++ C +E + +PK F+
Sbjct: 238 VKYSEILQEGKVYYISKARLQPAKPQFSNLSHPYELSLDRDTQIEECFDESN-VPKTHFN 296
Query: 235 FRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWG 294
F ++ I++ ENNS +DVIGI+ +V P + + G + RR + L D S S+ + LW
Sbjct: 297 FIKLNSIQNQENNSTIDVIGIIQTVGPHFELTSRAGKKFDRRDITLVDDSNYSIPVGLWN 356
Query: 295 ----DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHE 350
DF EG V+++K +V+DF GK++ ++ L +PD EA+
Sbjct: 357 QQAIDFNLPEGS------------VVAIKGVRVSDFGGKTLSMGFTSTLVPSPDINEAYS 404
Query: 351 LREWFDSGGKNAATVSISREI----AAGGAKNEI-----HKTVSQIKNEGLGRSEKPDWV 401
L+ W+DS G+N+ S+ +E + G +N T+++ + + LGRSE+ D+
Sbjct: 405 LKGWYDSVGQNSNFTSLKQEADGSSSVNGGENATKFISQRITIARAQEDNLGRSERGDFF 464
Query: 402 TVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQA 460
+V+A ++F+K D+F Y AC + CNKKV QS W+C++C+ +RY+L
Sbjct: 465 SVKAAVSFLKVDNFAYPAC----SNEGCNKKVLEQSDGTWRCEKCDINNPSPRWRYVLTI 520
Query: 461 QIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKI 520
I D+T W+T F + E++LG A +L LK D +F ++ ++ NQY FR++
Sbjct: 521 SIMDETNQLWLTLFDDQAEQLLGTSANKLMELKE--TDPNQFTKVTQAIQMNQYDFRIRA 578
Query: 521 KEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKSF 558
+E+ Y D+ R++ TV ++N +E+ YL D +SKS
Sbjct: 579 REDNYNDQTRIRYTVAFLHKINQKAEADYLADYLSKSL 616
>gi|444321919|ref|XP_004181615.1| hypothetical protein TBLA_0G01500 [Tetrapisispora blattae CBS 6284]
gi|387514660|emb|CCH62096.1| hypothetical protein TBLA_0G01500 [Tetrapisispora blattae CBS 6284]
Length = 629
Score = 287 bits (734), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 156/456 (34%), Positives = 262/456 (57%), Gaps = 31/456 (6%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
I I L+PYQ W IKARV+ KGD++ ++N RG+GK+ +F+LLD+ GEIR TCFN +V
Sbjct: 191 IFAIEQLSPYQNVWTIKARVSFKGDVKTWHNQRGEGKLLNFNLLDT-SGEIRATCFNQLV 249
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTE-EDDSIPKQQF 233
D++ E I+ G+VY ISK L+P++ F++L + +E+ +E + ++ C + + +PK F
Sbjct: 250 DKYNETIQEGKVYFISKARLQPSKPKFSNLSHPYELSIENDTIIEECNDVSTNDVPKTNF 309
Query: 234 SFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLW 293
+F + I++ E NS +DV+G + +VNP + + G + RR + + D +G +++ LW
Sbjct: 310 NFTKLDSIQNLETNSTIDVLGAIKTVNPHFELTSRAGKKFDRRDIEIVDETGFIIKVGLW 369
Query: 294 G----DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAH 349
DF EG ++++K +V DF GKS+ S+ L NPD +EA+
Sbjct: 370 NQQAIDFNVPEGS------------IVAIKGVRVTDFGGKSLSMGFSSTLTANPDISEAY 417
Query: 350 ELREWFDSGGKNAATVSISRE----IAAGGAKNEIHK--TVSQIKNEGLGRSEKPDWVTV 403
L+ W+D+ N S + E ++ G K I + T+++ KN+ LGRSEK D+ +V
Sbjct: 418 SLKGWYDANRNNTTFTSYNSESGGPVSGEGLKKIISQRITIAKAKNDNLGRSEKGDFFSV 477
Query: 404 RAFITFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQI 462
+A ++F+K D+F Y AC CNKKV Q+ W+C++C+ +RY+L I
Sbjct: 478 KAAVSFLKVDNFAYPAC----STEGCNKKVIEQTDGTWRCEKCDVSFPSPKWRYMLTISI 533
Query: 463 QDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKE 522
D+T W+T F E ++++G A L ++ + + F +I + FR++ +E
Sbjct: 534 MDETDQIWLTLFNEQAQQLIGLDASSL--METKENNPEEFNKITQQIQMKTLDFRIRARE 591
Query: 523 ELYGDEQRVKITVIRADQVNYSSESRYLLDLISKSF 558
+ Y D+ R++ TV ++ Y SE+ YL + +SKS
Sbjct: 592 DNYNDQTRIRYTVSNIHELKYKSEADYLAEELSKSL 627
>gi|366997334|ref|XP_003678429.1| hypothetical protein NCAS_0J01120 [Naumovozyma castellii CBS 4309]
gi|342304301|emb|CCC72091.1| hypothetical protein NCAS_0J01120 [Naumovozyma castellii CBS 4309]
Length = 613
Score = 286 bits (733), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 163/483 (33%), Positives = 267/483 (55%), Gaps = 32/483 (6%)
Query: 86 FQPTVQPPYQPPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNN 145
F PT Q Q + P ++ I I L+PYQ W IKARV+ KG++++++N
Sbjct: 147 FVPTPQQQPQHSTTSSTNFPSSHSQKSKAIFAIEQLSPYQNAWTIKARVSYKGEIKKWHN 206
Query: 146 ARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLK 205
RGDG +F+ + LD+ GEIR T FN ++FYEI++ G+VY +SK L+PA+ F +L
Sbjct: 207 QRGDGCLFNVNFLDT-SGEIRATAFNENAEKFYEILQEGKVYYVSKARLQPAKPQFTNLT 265
Query: 206 NEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPI 265
+ +E+ ++ + V+ C +ED+ +PK F+F + +++ ENN+ VDV+GI+ +VNP +
Sbjct: 266 HPYELSMDRETVVEECHDEDN-VPKTHFNFIKLDAVQNQENNTNVDVLGIIKTVNPHFEL 324
Query: 266 LRKNGMETQRRILNLKDTSGRSVELTLWG----DFCNKEGQKLQEMVDVGFFPVLSVKSG 321
+ G RR +++ D +G + + LW DF EG V+++K
Sbjct: 325 TSRAGKRFDRRDISIVDDTGFEISVGLWNQQALDFNLPEGS------------VVAIKGV 372
Query: 322 KVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNE-I 380
+V+DF GKS+ ++ L NP+ EA L+ W+D+ G+ S+ +E G E +
Sbjct: 373 RVSDFGGKSLSMGFNSTLVSNPEIPEAFSLKGWYDNTGRTGHFTSLKQENGMGAISAENL 432
Query: 381 HK------TVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT 434
K T+S+ E LG+SEK D+ +V+A I+F+K D+F Y AC + CNKKV
Sbjct: 433 TKFISQRITISRAIAENLGKSEKGDYFSVKAAISFLKVDNFAYPAC----SNENCNKKVI 488
Query: 435 -QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLK 493
Q W+C++C ++RY+L I D+T W+T F E +++L A L LK
Sbjct: 489 EQPDGTWRCEKCETNNPAPEWRYMLTISIMDETNQLWLTLFNEQAQQLLEVDANTLIALK 548
Query: 494 YELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDL 553
D F + ++ N+Y FR++ +E+ Y D+ R++ TV ++NY E+ +L
Sbjct: 549 D--NDPEEFTKRTQNIQMNEYDFRIRAREDNYNDQTRIRYTVANIHKLNYKVEADFLATE 606
Query: 554 ISK 556
+SK
Sbjct: 607 LSK 609
>gi|149637674|ref|XP_001507100.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit
[Ornithorhynchus anatinus]
Length = 619
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 185/553 (33%), Positives = 294/553 (53%), Gaps = 56/553 (10%)
Query: 11 IGNPKIFSESELTAQKTIPSNNLPQPVRVNNYSAPN--SGTFNLQNSGTFNSQNPGSFST 68
IGNP ++E Q+T P+ P P + S P +G+ L ++GT + SF+
Sbjct: 112 IGNPVPYNEGA-GQQQTTPA---PGPTAIPPASKPQQQNGSSGLGSAGTKSYGPAKSFAK 167
Query: 69 PNSGTFRAPNAGSIVRSFQPTVQPPYQPPPNFRNHGPILKNEAPARIIPIAALNPYQGRW 128
S GS ++++PIA+L PYQ +W
Sbjct: 168 TGSSNLLNTPGGS------------------------------HSKVVPIASLTPYQSKW 197
Query: 129 AIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYL 188
I ARVT K +R ++N+RG+GK+FS +L+D + GEIR T FN D+F+ +IEV +VY
Sbjct: 198 TICARVTNKSQIRTWSNSRGEGKLFSIELVD-ESGEIRATAFNDQADKFFPLIEVNKVYY 256
Query: 189 ISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNS 248
SKGSLK A K F +KN++E+ ++V C E+ +P QF F I ++E+ +S
Sbjct: 257 FSKGSLKIANKQFTAVKNDYEMTFNNETSVVPC-EDAHHLPTVQFDFTGIGDLENKSKDS 315
Query: 249 IVDVIGIVISVNPSVPI-LRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEM 307
+VD+IGI S + I ++ N E +R ++L D SG+ V TLWGD K
Sbjct: 316 LVDIIGICKSYEEANKITVKSNNREVSKRNIHLMDMSGKLVTATLWGDDAEK-------- 367
Query: 308 VDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSI 367
D PV+++K +V+DF G+S+ + S+ + +NPD EA +LR WFDS GK +SI
Sbjct: 368 FDGSRQPVMAIKGARVSDFGGRSLSVLSSSTVIMNPDIPEAFKLRGWFDSEGKGLDCISI 427
Query: 368 S--REIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIG 425
S R GG + KT+ ++K E LG +K ++ + + +++ ++ Y ACP
Sbjct: 428 SDLRSGGGGGGSSTNWKTLYEVKAENLGHGDKAEYFSCVGTVVYLRKENCMYQACP---- 483
Query: 426 DRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGC 484
+ CNKKV Q ++C++C+ E YR +L A I D WVT FQES E ILG
Sbjct: 484 SQDCNKKVIDQQNGLYRCEKCDCEFPNFKYRMILSANIADFQENQWVTCFQESAEAILG- 542
Query: 485 PAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYS 544
+++ + + +++ F E+ ++ F Y+FR+++K E Y DE R+K +V+ V++
Sbjct: 543 -QNTMFLGELKEKNEQAFEEVFQNANFRSYVFRIRVKLETYNDESRIKASVMDVKPVDHR 601
Query: 545 SESRYLLDLISKS 557
+ L+ I ++
Sbjct: 602 EYGKRLIANIRRN 614
>gi|406694919|gb|EKC98235.1| hypothetical protein A1Q2_07466 [Trichosporon asahii var. asahii
CBS 8904]
Length = 591
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 172/478 (35%), Positives = 261/478 (54%), Gaps = 34/478 (7%)
Query: 80 GSIVRSFQPTVQPPYQPPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGD 139
G+ R +P P R+ GPI PI L+PYQ +W IKARVT K D
Sbjct: 140 GAASRGGASNARPAAAPRGPSRDMGPIF---------PIEGLSPYQNKWTIKARVTQKSD 190
Query: 140 LRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQK 199
++ ++N RG+GK+FS L+D + GEIR T FN VD FY+++E G+V+ ISK + A+K
Sbjct: 191 IKHWSNQRGEGKLFSVTLMD-ETGEIRATGFNDQVDAFYQLLEEGKVFFISKARINIAKK 249
Query: 200 NFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISV 259
F+++ NE+EI E TE + S+P+ +++F ++++ES + ++ DVIG+V V
Sbjct: 250 QFSNVNNEYEITFENQ------TEIEPSVPEIKYNFTKLNDLESLQKDATTDVIGVVQEV 303
Query: 260 NPSVPILRKNGMET-QRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSV 318
+ I K + +R + L D SG+SV LTLWG K E PV++
Sbjct: 304 HDLGQITSKATQKPFNKRDIQLVDQSGQSVRLTLWG--------KTAENFTHYDHPVVAF 355
Query: 319 KSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGK--NAATVSISREIAAGGA 376
K KV+DF G+S+ S + INP+ EA LR W+DS G+ N + S + A
Sbjct: 356 KGVKVSDFGGRSLSMFSSATMAINPNTDEACALRGWYDSVGEKTNFKQYTNSGAMNAVSR 415
Query: 377 KNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQS 436
+EI KT+ Q K+E LG ++K D+ +V A I +IK ++F Y ACP CNKK+
Sbjct: 416 PDEI-KTIGQAKDEQLGMTDKTDYFSVCATILYIKQETFSYPACP----GEGCNKKLIDE 470
Query: 437 GNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYEL 496
G W+C++CN+ +RY+LQ + D TG W+T F E GE+I+G A EL+ LK E
Sbjct: 471 GAEWRCEKCNRTYPGPVHRYILQMNVIDHTGSFWITGFNEVGEQIMGVSANELFKLKQE- 529
Query: 497 QDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLI 554
D + ++ F++ K++ + D RV+ +NY+ S+ L+ I
Sbjct: 530 -SDPEAEKYFTRAAGREWDFKIMAKQDFFNDTARVRYQARSCAPINYAQSSQALVGKI 586
>gi|322698294|gb|EFY90065.1| replication factor-A protein 1 [Metarhizium acridum CQMa 102]
Length = 595
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 162/447 (36%), Positives = 256/447 (57%), Gaps = 23/447 (5%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
I PI L+P+Q +W IKARVT K D++ ++ G+GK+FS +LLD + GEI+ T FN
Sbjct: 162 IYPIEGLSPFQHKWTIKARVTMKSDIKTWHKPTGEGKLFSVNLLD-ESGEIKATGFNDQC 220
Query: 175 DRFYEIIEVGRVYLISK-GSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQF 233
D FY++++ G VY IS + A+K F++L N++EI E + ++ E+ ++P+ +F
Sbjct: 221 DAFYDLLQEGSVYYISSPCRVNLAKKQFSNLPNDYEITFERDTRIEK-AEDQTNVPQVRF 279
Query: 234 SFRHISEIESAENNSIVDVIGIVISVNPSVPILRKN-GMETQRRILNLKDTSGRSVELTL 292
+F I E+++ E ++ VDVIG++ V I K+ G Q+R L L D +G SV +T+
Sbjct: 280 NFCTIQELQNVEKDNTVDVIGVLKDVGEVSEITSKSSGKPFQKRELTLVDDTGYSVRVTV 339
Query: 293 WGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELR 352
WG N D V++ K KV+DF GKS+ + S + ++PD +AH L+
Sbjct: 340 WGKTANS--------FDANPESVVAFKGTKVSDFGGKSLSLLSSGTMTVDPDIPDAHRLK 391
Query: 353 EWFDSGGKN---AATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITF 409
W+DS G+ A +++ AGG NE KT++Q+K+E LG + P + +++A I F
Sbjct: 392 GWYDSSGRTDNFATHQNMASMGNAGGRANET-KTIAQVKDENLGM-DAPAYYSIKATIVF 449
Query: 410 IKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLT 469
+K D+FCY AC CNKKV ++G+ W C++C+ + DYRY++ + D T
Sbjct: 450 VKQDTFCYPAC----SKEGCNKKVVETGDGWYCEKCSVSHERPDYRYIVSLNVADHTSHQ 505
Query: 470 WVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQ 529
W+ F E+GE I G A +L LK DD +F + + FR + K + +GD Q
Sbjct: 506 WLNCFNETGEAIFGMTANQLMELKE--NDDAKFMAAFEAVNCKKLNFRCRAKMDNFGDTQ 563
Query: 530 RVKITVIRADQVNYSSESRYLLDLISK 556
RV+ VI A +++ SE L +LI +
Sbjct: 564 RVRYQVISASFLDFKSEGNKLAELIKQ 590
>gi|367015496|ref|XP_003682247.1| hypothetical protein TDEL_0F02250 [Torulaspora delbrueckii]
gi|359749909|emb|CCE93036.1| hypothetical protein TDEL_0F02250 [Torulaspora delbrueckii]
Length = 616
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 158/453 (34%), Positives = 260/453 (57%), Gaps = 27/453 (5%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
I I L+PYQ W IKARV+ KGD++ ++N +G+GK+F+ + LD+ GEIR T FN +
Sbjct: 180 IFAIEQLSPYQNMWTIKARVSYKGDIKTWHNQKGEGKLFNVNFLDT-SGEIRATAFNEMA 238
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
+F EI++ GRVY ISK L+PA+ F +L + +E+ ++ + V+ C +E + +PK FS
Sbjct: 239 TKFNEILQEGRVYYISKARLQPAKPQFTNLTHPYELSMDRDTVVEECFDESN-VPKTHFS 297
Query: 235 FRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWG 294
F ++ I + E NS VDV+GI+ +VNP + + G + RR +++ D SG S+ + LW
Sbjct: 298 FTKLNAIPNQEANSTVDVLGIIQTVNPQFELTSRAGKKFDRRDIDIVDDSGYSITVGLWN 357
Query: 295 DFCNKEGQKLQEMVDVGFF--PVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELR 352
Q+ VD V++ K +V DF GKS+ ++ + NP+ EA+ L+
Sbjct: 358 ----------QQAVDFNLAEGSVVAFKGIRVTDFGGKSLSMGFTSTMIPNPEVPEAYALK 407
Query: 353 EWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQ------IKNEGLGRSEKPDWVTVRAF 406
W+D G + S+ +E A + + K +SQ +NE LGRSEK D+ +++
Sbjct: 408 GWYDQKGHSENFSSLKQEAGAASSGANLAKFISQRISIATAQNENLGRSEKGDFFSIKGA 467
Query: 407 ITFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQ 465
+ F+K D+F Y AC + CNKKV +S W+C++C+ D+RY+L + D+
Sbjct: 468 VNFLKVDNFAYPAC----SNENCNKKVIEESDGTWRCEKCDTNNQAPDWRYMLTLSVLDE 523
Query: 466 TGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELY 525
TG WVT F + +++LG A EL +K D F + I+ NQY FR++ +E+ Y
Sbjct: 524 TGQMWVTVFNDQAKQLLGIGANELMAMKDNDAD--LFTKTIQGIQMNQYDFRIRAREDNY 581
Query: 526 GDEQRVKITVIRADQVNYSSESRYLLDLISKSF 558
++ R++ T+ +N+ +E+ YL + + +F
Sbjct: 582 NNQSRIRYTISNLHLLNFKAEADYLAEELRNAF 614
>gi|307184253|gb|EFN70726.1| Replication protein A 70 kDa DNA-binding subunit [Camponotus
floridanus]
Length = 607
Score = 285 bits (729), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 172/446 (38%), Positives = 254/446 (56%), Gaps = 23/446 (5%)
Query: 116 IPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVD 175
IPIA L+PYQ RW IKARVT K ++ ++N+RG+GK+FS DL+D + GEIR FN D
Sbjct: 170 IPIAILSPYQNRWIIKARVTNKSAIKTWSNSRGEGKLFSMDLID-ESGEIRCVAFNQQCD 228
Query: 176 RFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSF 235
FY +I+VG VY IS+ LK A K F+ LKN++E+ + + + C + D+IP QQF F
Sbjct: 229 NFYHLIDVGNVYYISRCKLKTANKQFSTLKNDYEMTITDDTMISPCHKNCDNIPMQQFDF 288
Query: 236 RHISEIESAENNSIVDVIGIVISVNPSVPIL-RKNGMETQRRILNLKDTSGRSVELTLWG 294
IS++ES E N+++DV+G+V + N I R G E +R +NL D SG + + LWG
Sbjct: 289 CPISQVESKEQNNLIDVLGVVTTFNDIQHITQRTTGKELIKRDINLIDDSGAMICVALWG 348
Query: 295 DFCNKEGQKLQEMVDVGF-FPVLSVKSGKVNDFS-GKSIGTIPSTQLFINPDFAEAHELR 352
KE + GF P+L++K +V +F+ GK++ I S+ L +PD EAH+LR
Sbjct: 349 ----KEAEDFD-----GFNNPILAIKGARVGEFNGGKNLSLINSSVLKKDPDIPEAHKLR 399
Query: 353 EWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGL-GRSEKPDWVTVRAFITFIK 411
+W+ + +SR ++GG N T ++ L G+ D V A I I+
Sbjct: 400 KWYAAANHLENVKFLSR--SSGGDFNTPLYTFREMTEAQLGGKLNFTDLYKVVATINLIR 457
Query: 412 SDSFCYTACPLMIGDRQCNKK-VTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTW 470
++ Y ACP+ C KK + QS ++C++CN++ YR L I D TG W
Sbjct: 458 VENSVYKACPI----DSCRKKLIDQSTGIFRCEKCNKDYPNFVYRLLANMNIADATGNRW 513
Query: 471 VTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQR 530
V AF E E+ILG A+EL LK DD + E + F +++F L++K E++ DE R
Sbjct: 514 VIAFNEVAEKILGISAQELGELKENDNDD--YMEKLNEANFKRFIFSLRVKSEVFQDEMR 571
Query: 531 VKITVIRADQVNYSSESRYLLDLISK 556
+K T +NY + YL+D +SK
Sbjct: 572 IKHTCTSVVPLNYKTHLTYLIDEVSK 597
>gi|302913119|ref|XP_003050848.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256731786|gb|EEU45135.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 611
Score = 285 bits (729), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 162/448 (36%), Positives = 264/448 (58%), Gaps = 23/448 (5%)
Query: 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
+ I PI L+P+ +W IKARVT+K D++ ++ A G+GK+FS +LLD + GEI+ T FN
Sbjct: 173 SNIYPIEGLSPFAHKWTIKARVTSKSDIKTWHKATGEGKLFSVNLLD-ESGEIKATGFNE 231
Query: 173 VVDRFYEIIEVGRVYLISK-GSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQ 231
D FY+ ++ G VY IS + A+K F++L N++E+ E + ++ E+ ++P+
Sbjct: 232 QCDAFYDRLQEGSVYYISTPCRVSLAKKQFSNLPNDYELAFERDTVIEK-AEDQTNVPQV 290
Query: 232 QFSFRHISEIESAENNSIVDVIGIVISVNPSVPIL-RKNGMETQRRILNLKDTSGRSVEL 290
+F+F I E++S E ++ VDVIG++ V I+ +K+G Q+R L L D +G SV +
Sbjct: 291 RFNFCTIQELQSVEKDNTVDVIGVLKEVGEIGEIVSKKDGRPFQKRELTLVDDTGYSVRV 350
Query: 291 TLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHE 350
T+WG N D V++ K KV+DF GKS+ + S + ++PD A+AH
Sbjct: 351 TVWGKTANS--------FDAPAESVVAFKGTKVSDFGGKSLSLLSSGTMSVDPDIADAHR 402
Query: 351 LREWFDSGGKN---AATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFI 407
L+ W+DS G+ A ++ A G K+EI KT+SQ+K+E LG ++ + T++A I
Sbjct: 403 LKGWYDSAGRTDTFATHQGMASMGNATGRKDEI-KTISQVKDENLGMDDQA-YYTIKATI 460
Query: 408 TFIKSDSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQT 466
F+K D+FCY AC + CNKKVT+ G+ W C++CN ++ +YRY+L + D T
Sbjct: 461 VFMKQDTFCYPAC----ASQGCNKKVTEMGDGTWHCEKCNVSHEKPEYRYILSLNVADHT 516
Query: 467 GLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYG 526
W++ F +SG++ILG A E+ LK E D +F + FR + K + +G
Sbjct: 517 SHQWLSCFDDSGQKILGRTANEMMELK-ESDDPTKFTAAFEEANCKKLTFRCRAKMDNFG 575
Query: 527 DEQRVKITVIRADQVNYSSESRYLLDLI 554
+ QR++ V+ A ++++SE L ++I
Sbjct: 576 EAQRIRYQVMSAMPLDFTSEGNKLKEMI 603
>gi|346471207|gb|AEO35448.1| hypothetical protein [Amblyomma maculatum]
Length = 604
Score = 285 bits (728), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 165/447 (36%), Positives = 261/447 (58%), Gaps = 18/447 (4%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
++PIA+L PYQ RW I+ARVT K +R ++N++G+GK+FS DLLD + GEIR T FNA
Sbjct: 166 VVPIASLTPYQNRWTIRARVTNKSGIRTWSNSKGEGKLFSMDLLD-ESGEIRATAFNAEC 224
Query: 175 DRFYEIIEVGRVYLISKGSLK--PAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQ 232
DR Y+I+EV +VY IS+ +K A +F+ +KN++E+ +T+ C + +IP Q
Sbjct: 225 DRLYDIVEVNKVYYISRAVIKNIRAGYSFSSIKNDFEMSFIPETTITPCDDVVPNIPTLQ 284
Query: 233 FSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKN-GMETQRRILNLKDTSGRSVELT 291
F+F IS ++ +S++DVIGI + + R+N E ++R ++L D SG V LT
Sbjct: 285 FNFVPISRLQEVSKDSVIDVIGICKTAGDVTTVTRRNTNQELKKRDVSLVDRSGTEVSLT 344
Query: 292 LWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHEL 351
+WGD E D PV++VK +V+DFSG S+ I S+ L +NPD E+H L
Sbjct: 345 MWGD--------QAEKFDGSDNPVVAVKGARVSDFSGVSLSLISSSMLQVNPDIPESHAL 396
Query: 352 REWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIK 411
W+ G T S+S N KT++Q K E LG+ +KPD+ +V+A ++ I+
Sbjct: 397 LGWYTKEGALLQTRSLSTRAGGAMGGNANWKTLAQAKAENLGQGDKPDYYSVKACVSIIR 456
Query: 412 SDSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQTGLTW 470
++ Y ACP CNKKV N ++C++C +E + +R L+ A + D + W
Sbjct: 457 KENCLYKACP----SENCNKKVVDLENGYYRCEKCARETMDFKWRLLVSANLTDFSDGQW 512
Query: 471 VTAFQESGEEILGCPAKEL-YMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQ 529
VT F + E+++G A++L M ++D R+ +I+ F ++FRL+ K E++ DE
Sbjct: 513 VTCFGKEAEQLIGASAEDLGEMYSKSSKEDSRYEDILNEVPFKPFIFRLRTKMEVFNDES 572
Query: 530 RVKITVIRADQVNYSSESRYLLDLISK 556
R+K +V+ VNY ++ LL I++
Sbjct: 573 RLKTSVMSVAPVNYVEYTQKLLKDIAE 599
>gi|387916032|gb|AFK11625.1| replication protein A [Callorhinchus milii]
Length = 611
Score = 285 bits (728), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 165/447 (36%), Positives = 258/447 (57%), Gaps = 19/447 (4%)
Query: 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
A+++PIA LNPYQ +W I+ARVT K +R ++N+RG+GK+FS +LLD + GEIR F
Sbjct: 177 AKVVPIACLNPYQSKWTIRARVTNKSQIRTWSNSRGEGKLFSIELLD-ESGEIRAAAFTD 235
Query: 173 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQ 232
VD+F+ +IEV +VY +SKG+LK A K + +KN++E+ +TV C ++ D++PK Q
Sbjct: 236 QVDKFFPLIEVNKVYYVSKGTLKTANKQYTSVKNDYEMTFNNDTTVIPC-DDGDNLPKVQ 294
Query: 233 FSFRHISEIESAENNSIVDVIGIVISVNPSVPI-LRKNGMETQRRILNLKDTSGRSVELT 291
F F I ++++ ++++D+IG+ S I +R E +R + L D SG+ V T
Sbjct: 295 FEFIPIDQLDTKNKDTMIDIIGVCKSYEEVSKITVRTTNREVSKRNVQLLDMSGKIVTAT 354
Query: 292 LWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHEL 351
LWG+ K D PVL++K +++D+ G+S+ S+ L +NPD EA +L
Sbjct: 355 LWGEDAEK--------FDGSGQPVLAIKGARLSDYGGRSLSVTSSSTLMVNPDIPEAFKL 406
Query: 352 REWFDSGGKNAATVSISR-EIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFI 410
R WFD+ G+ +SIS + + G N KT+ + K+E LG EK D+ T I ++
Sbjct: 407 RGWFDTEGQVVEGISISDLKGGSFGGGNSNWKTLMEAKSENLGHGEKADYYTCVGTIVYL 466
Query: 411 KSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLT 469
K ++ Y ACP CNKKV Q ++C++C++E YR +L + D
Sbjct: 467 KKENCMYQACPT----SDCNKKVIDQQNGLYRCEKCDREFPNFKYRLILSVNLADFGDNQ 522
Query: 470 WVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQ 529
WVT FQE+GE ILG LY+ + + ++ F EI + F Y R+++K E Y DE
Sbjct: 523 WVTCFQETGEGILG--QNCLYLGELKDSNEQAFEEIFQQANFRSYTCRIRVKLETYNDES 580
Query: 530 RVKITVIRADQVNYSSESRYLLDLISK 556
R+K T++ V++ S+ L+ I K
Sbjct: 581 RIKATMMDVKPVDHKEYSKRLIMNIRK 607
>gi|168053891|ref|XP_001779367.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669165|gb|EDQ55757.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 451
Score = 284 bits (727), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 159/454 (35%), Positives = 257/454 (56%), Gaps = 20/454 (4%)
Query: 114 RIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAV 173
R+ PI +LNPYQG W IK RVT+K LR + NARGDG VF+ +L D DG +I+ T F
Sbjct: 6 RVYPILSLNPYQGNWTIKVRVTSKSPLRTFKNARGDGNVFNVELTDEDGTQIQATMFKEA 65
Query: 174 VDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDS--IPKQ 231
D+FY+++++ +VY ISKGSL+ A K + +KN++E+ L + S + E + +P
Sbjct: 66 ADKFYDVLQLDKVYFISKGSLRMANKQYATVKNDYEMTLNSNSEIVEADIESSTFKLPSA 125
Query: 232 QFSFRHISEI--ESAENNSIVDVIGIVISVNPSVPILRK-NGMETQRRILNLKDTSGRSV 288
++F IS++ + + DV+G+V SV P + RK N E +R + L D S ++V
Sbjct: 126 TYNFTKISDLGRHISSKRFVADVLGVVQSVGPLTTVNRKSNNDEIPKRDIVLLDQSRQTV 185
Query: 289 ELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEA 348
LTLW + KEG L ++ + P+L K +++DF G S+ + +T + INP +A
Sbjct: 186 VLTLWNNMAVKEGASLADL--IAESPILMAKGLRLSDFQGVSLSSTMNTMVLINPVIPDA 243
Query: 349 HELREWFDSGGKNAATVSISREIAAGGAKNEIHKT----VSQIKNEGLGRSEKPDWVTVR 404
+ELR W++ G+ A+ + G +N T +S I +G KP + VR
Sbjct: 244 NELRTWYEEDGRTASLTPAGASLPGGTNQNRSSFTDRAVLSDIIQPNVGEG-KPMYFNVR 302
Query: 405 AFITFIKSD-SFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQI 462
A+I+FIK D + Y AC + CN+KV QS + + C+ C D+C RY++QA++
Sbjct: 303 AYISFIKPDQAMWYLAC------QTCNRKVVEQSSSSYWCEGCQNHYDKCSRRYIMQAKL 356
Query: 463 QDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKE 522
D +G WV+AF E E +LG A L ++ + DD ++ +R ++ ++R+ +
Sbjct: 357 SDSSGEAWVSAFNEQAESLLGVSADNLSEMRNQAGDDNQYQNAVRKAMWQPCVYRISAAQ 416
Query: 523 ELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
Y E+R ++TV V++ +ES++LL I+K
Sbjct: 417 TEYMSEKRQRLTVRTVVPVDWVAESKHLLAKITK 450
>gi|347965864|ref|XP_321709.4| AGAP001421-PA [Anopheles gambiae str. PEST]
gi|333470320|gb|EAA01767.4| AGAP001421-PA [Anopheles gambiae str. PEST]
Length = 612
Score = 284 bits (727), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 163/442 (36%), Positives = 258/442 (58%), Gaps = 20/442 (4%)
Query: 117 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDR 176
PI++L+PYQ +W IKARV +K +R ++NA+G+GK+FS D++D + GEIR+T F DR
Sbjct: 178 PISSLSPYQNKWVIKARVMSKSGIRTWSNAKGEGKLFSMDVMD-ESGEIRITAFKEQCDR 236
Query: 177 FYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFR 236
+Y++IEV +VY ISK LKPA K + LKN++E+ + + V C + D S+P+ Q++F
Sbjct: 237 YYDMIEVDKVYFISKCQLKPANKQYTSLKNDYEMTMTNDTIVQECKDADGSMPEIQYNFV 296
Query: 237 HISEIESAENNSIVDVIGIVISVNPSVPILRK-NGMETQRRILNLKDTSGRSVELTLWGD 295
IS+I + E N++VDVIG+ + V K +G E ++R + L D+S SV+LTLWGD
Sbjct: 297 PISQIANMEPNAMVDVIGMCKDASDVVQFTAKTSGRELRKREITLVDSSNASVQLTLWGD 356
Query: 296 FCNKEGQKLQEMVDVGFFPVLSVKSGKVNDF-SGKSIGTIPSTQLFINPDFAEAHELREW 354
+ Q PV+ +K +V++F GKS+G I + + +NPD AH++R W
Sbjct: 357 ----DAQNFPATT----HPVVLLKGARVSEFGGGKSLGLIGGSVMKLNPDLEMAHKVRGW 408
Query: 355 FDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDS 414
F++GG A+ S+S + + + K++ LG +KPD+ V+A I IKS +
Sbjct: 409 FENGGSEASVSSVSARTGGAAGVSTEWLSFQEAKDKNLGAGDKPDYFQVKAMIHTIKSAN 468
Query: 415 FCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTA 473
Y ACP CNKKV Q +++C++CN E YR L+ I D T WVT
Sbjct: 469 AVYKACP----QADCNKKVIDQENGQFRCEKCNAEFPNFKYRLLVNMLIGDWTSNRWVTV 524
Query: 474 FQESGEEILGCPAKEL-YMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVK 532
F E EE+LG ++E+ L+Y+ ++ + + S F ++F+L+ K E +G++ R K
Sbjct: 525 FTELAEEMLGKSSQEIGSSLEYQKEEAEK---LFTSISFKSFVFKLRTKVEYFGEQPRNK 581
Query: 533 ITVIRADQVNYSSESRYLLDLI 554
+ + VN+ + L+ I
Sbjct: 582 TSAVSVAPVNHKEYNALLIKSI 603
>gi|350411045|ref|XP_003489220.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Bombus impatiens]
Length = 595
Score = 284 bits (727), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 167/448 (37%), Positives = 254/448 (56%), Gaps = 30/448 (6%)
Query: 116 IPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVD 175
IPI AL+PYQ RW IKARV K +R ++N+RG+GK+FS DL+D + GEIR T F D
Sbjct: 161 IPIVALSPYQNRWVIKARVVNKSAIRTWSNSRGEGKLFSMDLVD-ESGEIRCTAFRDQCD 219
Query: 176 RFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSF 235
+FY++IE+G+VY IS+ SLK A K FN+LKN++E+ L S + C + D IP QF F
Sbjct: 220 KFYDMIEIGKVYYISRASLKTANKQFNNLKNDYEMTLTGDSEIIPCHDIGDKIPTLQFDF 279
Query: 236 RHISEIESAENNSIVDVIGIVISV-NPSVPILRKNGMETQRRILNLKDTSGRSVELTLWG 294
I++IE E N I+DV+ IV S + + + R G + ++R +NL D S V LTLWG
Sbjct: 280 IPINDIEQKEKNDIIDVLAIVKSRGDLQMLVSRTTGKDMKKRDVNLIDESNTMVTLTLWG 339
Query: 295 ----DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFS-GKSIGTIPSTQLFINPDFAEAH 349
+F + PVL++K +V +F+ GK++ T+ T + I+PD EAH
Sbjct: 340 TQAEEFSGNDN------------PVLAIKGARVGEFNGGKNLSTLSGTAVQIDPDIPEAH 387
Query: 350 ELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITF 409
LR WF++ G + +SR + ++ T+ + N + + P+ TV+A I
Sbjct: 388 RLRGWFNTTGCHEEAKPLSRAFGSAAQMSQALITIGE-ANSQIDKKNGPEIFTVKATINL 446
Query: 410 IKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGL 468
+++++ Y +CP C KKV Q+ ++C++CN+E YR L + D T
Sbjct: 447 LRTENILYKSCP----SENCKKKVIDQANGMYRCEKCNKEFPNFKYRLLGSLSLADWTDN 502
Query: 469 TWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDE 528
WVTAF + E+ILG A+EL LK D+ + E + F ++F+++ K E +GDE
Sbjct: 503 MWVTAFNDETEKILGITAQELGELKE--NDNDAYLEKLGEVTFKSFIFKIRTKMETFGDE 560
Query: 529 QRVKITVIRADQVNYSSESRYLLDLISK 556
R++ T I V+ + Y DLI+K
Sbjct: 561 NRLRSTCI---DVSPTDCKAYNEDLITK 585
>gi|452840129|gb|EME42067.1| hypothetical protein DOTSEDRAFT_72982 [Dothistroma septosporum
NZE10]
Length = 621
Score = 284 bits (727), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 161/452 (35%), Positives = 269/452 (59%), Gaps = 21/452 (4%)
Query: 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
A I PI A++PY +W IKAR T+KGD++ ++N G+GK+FS + LD D GEIR+T FN
Sbjct: 171 ANITPIEAISPYTHKWTIKARCTSKGDIKTWHNKNGEGKLFSANFLD-DSGEIRMTGFND 229
Query: 173 VVDRFYEIIEVGRVYLISK-GSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQ 231
VD++Y+ ++ G VY IS ++PA+K F++L N++E+ E + ++ E++D +P+
Sbjct: 230 AVDQWYDTLQEGSVYYISSPCRVQPAKKQFSNLNNDYELTAEKDTQIEKA-EDNDGVPQV 288
Query: 232 QFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGME-TQRRILNLKDTSGRSVEL 290
+++F I+ ++ E +S +DVIG++ V+ I+ K + +R L L D +G +V L
Sbjct: 289 RYNFTTIAALQEIEKDSTIDVIGVLQDVSEVSEIVSKTTSKPYSKRELTLVDNTGYNVRL 348
Query: 291 TLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHE 350
T+WG K E +D+ V++ K KV+DF G+S+ + S + NPD EA++
Sbjct: 349 TVWG--------KTAETLDIQPESVVAFKGVKVSDFGGRSLSLLSSGSMSANPDIEEAYK 400
Query: 351 LREWFDSGGKNAATVSISREIAAGGA----KNEIHKTVSQIKNEGLGRSEKPDWVTVRAF 406
L+ W+D G+ S + +A GA K KT++Q+++EGLG ++ DW +++A
Sbjct: 401 LKGWYDGAGRTENFASHANTMATVGATSGGKGNDTKTIAQVRDEGLGMTDDTDWFSIKAT 460
Query: 407 ITFIKSDSFCYTACPLMIGDRQCNKKVTQS--GNRWQCDRCNQEIDECDYRYLLQAQIQD 464
I ++K D+F Y AC + CNKKV ++ GN W+C++C++ D YRY++ + D
Sbjct: 461 IIYVKQDNFAYPAC-RTTDPQPCNKKVIENEPGN-WRCEKCDKSWDAPKYRYIMSVNVSD 518
Query: 465 QTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEEL 524
TG W++ F E GE I+G PA +L +K E DD R + + FR+K K +
Sbjct: 519 HTGQIWLSCFDEVGERIMGMPANDLMAMKEE-GDDKRVTDAFGDANCQTFNFRVKAKMDN 577
Query: 525 YGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
+ D+QRV+ V A+ +++S E+ L +I +
Sbjct: 578 FQDQQRVRYQVQYANPLDFSREATKLAQIIKQ 609
>gi|50287931|ref|XP_446394.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525702|emb|CAG59321.1| unnamed protein product [Candida glabrata]
Length = 627
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 159/456 (34%), Positives = 262/456 (57%), Gaps = 32/456 (7%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
I I L+PYQ W IKARV+ KGD++ ++N RG+GK+ + + LD+ GEIR T FN
Sbjct: 190 IFAIEQLSPYQNVWTIKARVSYKGDIKTWHNQRGEGKLLNVNFLDT-SGEIRATAFNDNA 248
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
F EI++ G+VY +SK L+PA+ F +L + +E+ L+ + ++ +E++ +PK F+
Sbjct: 249 TAFNEILQEGKVYYVSKARLQPAKPQFTNLSHPYELNLDRETVIEESFDENN-VPKTHFN 307
Query: 235 FRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWG 294
F + I+S ENNS VDV+GI+ +VNP + + G + RR + + D SG ++ + LW
Sbjct: 308 FIKLDNIQSQENNSNVDVLGIIQTVNPHFELTSRAGKKFDRRDIQIVDDSGFAISVGLWN 367
Query: 295 ----DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHE 350
DF EG V+++K +V+DF GKS+ ++ L NP+ EA++
Sbjct: 368 QQALDFNLPEGS------------VVAIKGVRVSDFGGKSLSMGFNSTLIANPEIPEAYK 415
Query: 351 LREWFDSGGKNAATVSISREIAAG--GAKN-----EIHKTVSQIKNEGLGRSEKPDWVTV 403
L+ W+D GK+ S+ ++ AG A N T+++ + E LG++E+ D+ +V
Sbjct: 416 LKGWYDQQGKDQDFTSLKQDAGAGTTSAANLAKFISQRITIARAEAENLGKNERGDFFSV 475
Query: 404 RAFITFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQI 462
+A I+F+K D+F Y AC + CNKKV Q W+C++C+ +RY+L I
Sbjct: 476 KAAISFMKVDNFAYPAC----SNENCNKKVIEQPDGTWRCEKCDINNPSPRWRYILTISI 531
Query: 463 QDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKE 522
D+TG W+T F + +++LG A L LK D+ F ++ NQY FR++ +E
Sbjct: 532 IDETGNLWLTLFDDQAKQLLGVDANTLMSLKENDPDE--FTRTTQNVQMNQYDFRIRARE 589
Query: 523 ELYGDEQRVKITVIRADQVNYSSESRYLLDLISKSF 558
+ Y D+ R++ TV ++N+ +E+ YL D ++K F
Sbjct: 590 DNYNDQTRIRYTVANLHKLNFKAEADYLADELTKVF 625
>gi|145353884|ref|XP_001421229.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581466|gb|ABO99522.1| predicted protein, partial [Ostreococcus lucimarinus CCE9901]
Length = 650
Score = 282 bits (722), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 159/464 (34%), Positives = 262/464 (56%), Gaps = 11/464 (2%)
Query: 101 RNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDS 160
R+ G + +NE P I PI ALNPYQ RW I+AR+T +LR Y+NA+G+GKV F +LD+
Sbjct: 189 RDGGAVARNEQPRSITPIHALNPYQNRWTIRARITTPLELRSYSNAKGEGKVLGFQVLDA 248
Query: 161 DGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDL 220
DG EI+ CFN R + G VY ISKG++ ++ + ++EI L+ +T
Sbjct: 249 DGTEIKCVCFNDTAVRLAGELRQGLVYEISKGAI-VTPRDPRYAIYQYEIKLDNHATFVP 307
Query: 221 CTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNL 280
C + + I K + F+ +SE+++ +VDVIGI SV I++++G ET +R + +
Sbjct: 308 CPDAERDIKKMVYKFKKLSELDALNAGDMVDVIGIAYSVGDLTTIMKRDGSETSKRSVMI 367
Query: 281 KDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLF 340
+D S S+E TLW + G +++ ++ G PV++VKS ++ +F GK++GT+ ST +
Sbjct: 368 RDDSDTSIEFTLWDPHSVEIGGQIESLIASGEKPVIAVKSSRLGEFQGKNMGTVSSTMVE 427
Query: 341 INPDFAEAHELREWFDSGGKNAA-TVSISREIAAGGAKNEI--HKTVSQIKNEGLGRSEK 397
INPD +EA +R WFD GG + G E+ TV +I E + ++E
Sbjct: 428 INPDSSEATRMRVWFDQGGADKTFNSLSGSGGGGGKGSGELLSFSTVKEIGEELVAKNEG 487
Query: 398 PDWVTVRAFITFIK--SDSFCYTACPLMIGDRQCNKKVTQ--SGNRWQCDR-CNQEIDEC 452
+++ I IK ++ Y ACPL+ G+R C KK+ + S W+C+R ++I+
Sbjct: 488 VAYLSCCGIIKHIKLGAEGNFYPACPLLNGERTCQKKLRKDDSTGEWKCERHAGEKIEAA 547
Query: 453 DYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFN 512
D+RY+ D + WV+ F + G++I G A E+ + Y+ + + R+ +I +FN
Sbjct: 548 DWRYMFSMVCMDHSDEYWVSVFGDKGDKIFGISAAEMKEI-YDREPE-RYENMISDALFN 605
Query: 513 QYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
Y R+K+ + Y D R K +++ ++VNY S+ L+ I+K
Sbjct: 606 DYSLRVKVAVDNYTDVPRAKGSLVEIERVNYVDMSKKLIGKIAK 649
>gi|453084498|gb|EMF12542.1| replication factor A 1, rfa1 [Mycosphaerella populorum SO2202]
Length = 624
Score = 282 bits (722), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 171/478 (35%), Positives = 268/478 (56%), Gaps = 25/478 (5%)
Query: 88 PTVQPPYQPPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNAR 147
P Q P + P+ N N I PI A++PY +W IKAR T KGD++ ++N
Sbjct: 153 PVKQEPQRSLPSRTNGAS--HNGPHGNITPIEAISPYTHKWTIKARCTHKGDIKTWHNKN 210
Query: 148 GDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGS-LKPAQKNFNHLKN 206
G+GK+FS + LD + GEIR T FN VD+++E+++ G VY IS ++ A+K F++L N
Sbjct: 211 GEGKLFSANFLD-ESGEIRATMFNDQVDQWHEVLQEGSVYYISSPCRVQLAKKQFSNLPN 269
Query: 207 EWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPIL 266
++E+ E + V+ E++D +P+ +++F I +++ E +S +DVIG+V V I+
Sbjct: 270 DYELTFENQTLVEKA-EDNDGVPQVRYNFITIEALQTVEKDSTIDVIGVVSEVGEVNEIV 328
Query: 267 RKNGME-TQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVND 325
K + +R L L D +G +V LT+WG K E D V++ K KV D
Sbjct: 329 SKTTSKPYSKRDLTLVDDTGYNVRLTIWG--------KTAESFDAQPESVIAFKGVKVGD 380
Query: 326 FSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVS----ISREIAAGGAKNEIH 381
F G+S+ + S + +NP+ EA +L+ W+ + G N S +S A GGA
Sbjct: 381 FGGRSLSLLSSGSMNVNPEIDEAFKLKGWYSASGHNETFASHANTMSTAGATGGAGRNDT 440
Query: 382 KTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQ-CNKKV--TQSGN 438
KT+SQ+++E LG ++ DW + +A I +IK D+F Y AC D Q CNKKV + GN
Sbjct: 441 KTISQVRDENLGMTDDTDWFSTKATIIYIKQDNFAYPAC--QTTDPQPCNKKVLEVEEGN 498
Query: 439 RWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQD 498
W+C++C++ YRY++ + D TG W++ F E G++ILG PA +L +K E D
Sbjct: 499 -WRCEKCDKSWPSPKYRYIISVNVSDHTGQIWLSCFDEVGQQILGMPANDLMAMKEE-GD 556
Query: 499 DVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
D R E Y+FR K K + + D+QRV+ V A ++Y E++ L D+I +
Sbjct: 557 DKRVSEAFSDANCKSYIFRCKAKMDTFQDQQRVRYQVQYARTIDYVQEAKRLADIIKQ 614
>gi|392567006|gb|EIW60181.1| replication factor-a protein [Trametes versicolor FP-101664 SS1]
Length = 561
Score = 282 bits (722), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 167/504 (33%), Positives = 275/504 (54%), Gaps = 25/504 (4%)
Query: 62 NPGSFSTPNSGTFRAPNAGSIVRSFQP--TVQPPYQPPPNFRNHGPILKNEAP-ARIIPI 118
NP G+ A + S + P + +P P + P N I PI
Sbjct: 71 NPVGIQARAGGSIEAQASPSAAVTPAPAASTKPAVSAAPAQSSRQPTQGNRGGRTAIYPI 130
Query: 119 AALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFY 178
+L+PYQ W IKARV +K ++R ++N RG+GK+F+ L+D + GEIR T FNA VD Y
Sbjct: 131 ESLSPYQNHWTIKARVISKSEIRTWSNQRGEGKLFNITLMD-ESGEIRATGFNATVDELY 189
Query: 179 EIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHI 238
+ I+ G+VY ISK + A+K F+++ NE+E+ LE + ++ C + D +P +F+F I
Sbjct: 190 DRIQEGKVYFISKAKVNLAKKKFSNIANEYELALERNTEIEECPDAAD-VPTVKFNFTPI 248
Query: 239 SEIESAENNSIVDVIGIVISVNPSVPILRK-NGMETQRRILNLKDTSGRSVELTLWGDFC 297
+ ++ +++ D++G+V V I K + ++ L + D SG SV++TLWG
Sbjct: 249 ANLQEIAKDAVCDIVGVVKEVGELSSITSKATSKQIPKKELTVVDASGFSVKVTLWG--- 305
Query: 298 NKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDS 357
K+ ++ E VD +PV++ K KV DF G+S+ + S+ L INPD EAH LR W+D+
Sbjct: 306 -KQAEQYNE-VD---YPVIAFKGAKVGDFQGRSLSMMSSSSLIINPDIPEAHHLRGWYDA 360
Query: 358 GGKNAATVSISREIAAGGA----KNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSD 413
G S + +++GG + EI ++++ +K LG S+K D + RA I IK D
Sbjct: 361 AGAEQTYQSHTNTMSSGGGVSFDRAEI-RSLNDVKTSELGMSDKVDTFSSRATIMHIKGD 419
Query: 414 SFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTA 473
+ Y ACP + CNKKV G+ W+C+ C++ + ++RY++ + D +G W
Sbjct: 420 NIAYPACP----SQGCNKKVVLMGDSWRCENCDKSYPQPEHRYIVPMAVADYSGQAWFQG 475
Query: 474 FQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKI 533
F + G + G PA +L +K +DD F ++ + Y F + K++ Y D+ RV+
Sbjct: 476 FNDVGLIVFGMPANDLVAIKE--RDDTEFNRVLEGTIGTTYNFACRAKQDNYNDQARVRY 533
Query: 534 TVIRADQVNYSSESRYLLDLISKS 557
+ R ++Y E+ YL +L+ +S
Sbjct: 534 GISRILPLDYREEATYLANLLRRS 557
>gi|328770102|gb|EGF80144.1| hypothetical protein BATDEDRAFT_88559 [Batrachochytrium
dendrobatidis JAM81]
Length = 643
Score = 282 bits (722), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 149/442 (33%), Positives = 252/442 (57%), Gaps = 20/442 (4%)
Query: 118 IAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRF 177
I LNPYQ +W IK + KG +R +N A +G++F+F + D D G+IR T FN VD F
Sbjct: 214 IKTLNPYQNKWTIKGVIINKGSVRTWNKAGREGRLFNFTISD-DSGDIRCTGFNEAVDMF 272
Query: 178 YEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRH 237
YE I+ G+ Y+ISK +K + FN +++E+ ++ +++ +C + SIP+ +++
Sbjct: 273 YESIQEGQAYVISKAMIKVSNPAFNKGGHDYEMTIDPHTSITVCNDPK-SIPQIKYNALT 331
Query: 238 ISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFC 297
+ + E ++++D++ +V P I K + ++R LN+ D SG V LTLWG
Sbjct: 332 LDRLLEVEKDAVIDILAVVKECFPVSEITTKANNKLKKRDLNIVDESGWLVRLTLWGSQA 391
Query: 298 NKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDS 357
E + PV+ +K+ +V DF G+++ S+ L +NP +A LR WFD+
Sbjct: 392 --------ETFEHSDNPVIGIKNARVGDFGGRTLSVAMSSTLTLNPTMQDAFRLRGWFDA 443
Query: 358 GGKNAATVSISREIAAGGAKNEIH---KTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDS 414
+ + S+ + + N H KT+ QI++ LG EKPD+V++RAFI+F K ++
Sbjct: 444 KASSIDFHTYSKSSSGVTSGNSTHSNLKTIQQIQDANLGNGEKPDYVSLRAFISFAKREN 503
Query: 415 FCYTACPLMIGDRQC-NKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTA 473
Y ACP + C NKKV + G+ W+C++C+ YRY+ + D TG TW+ A
Sbjct: 504 LWYPACP----NEACRNKKVVEIGSEWRCEKCDSNYPHPVYRYITSFSVSDYTGQTWLQA 559
Query: 474 FQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKI 533
F E+ E++LG A E+ L +D+ F II ++ +Y+F ++ K E+Y D ++ ++
Sbjct: 560 FNETVEKVLGKTANEMQKLVDTDKDE--FDRIIEQAIYQEYVFDVRAKAEMYQDAKKTRL 617
Query: 534 TVIRADQVNYSSESRYLLDLIS 555
T++ A +V+Y++ SR +L IS
Sbjct: 618 TIVEAKEVDYAAASREMLATIS 639
>gi|340714568|ref|XP_003395799.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Bombus terrestris]
Length = 595
Score = 282 bits (721), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 165/448 (36%), Positives = 254/448 (56%), Gaps = 30/448 (6%)
Query: 116 IPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVD 175
IPI AL+PYQ RW IKARV K +R ++N+RG+GK+FS DL+D + GEIR T F D
Sbjct: 161 IPIVALSPYQNRWVIKARVVNKSAIRTWSNSRGEGKLFSMDLVD-ESGEIRCTAFRDQCD 219
Query: 176 RFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSF 235
+FY++IE+G+VY IS+ +LK A K FN+LKN++E+ L S + C + D IP QF F
Sbjct: 220 KFYDMIEIGKVYYISRATLKTANKQFNNLKNDYEMSLTGDSEIIPCHDIGDKIPTLQFDF 279
Query: 236 RHISEIESAENNSIVDVIGIVISV-NPSVPILRKNGMETQRRILNLKDTSGRSVELTLWG 294
I++IE E N I+D++ IV S + + + R G + ++R +NL D S V LTLWG
Sbjct: 280 IPINDIEQKEKNDIIDILAIVKSRGDLQMLVSRTTGKDMKKRDINLIDESNTMVTLTLWG 339
Query: 295 ----DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFS-GKSIGTIPSTQLFINPDFAEAH 349
+F + PVL++K +V +F+ GK++ T+ T + I+PD EAH
Sbjct: 340 TQAEEFSGNDN------------PVLAIKGARVGEFNGGKNLSTLSGTAVQIDPDIPEAH 387
Query: 350 ELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITF 409
LR WF++ G + +SR + ++ T+ + N + + P+ TV+A I
Sbjct: 388 RLRGWFNTTGCHEEAKPLSRAFGSAAQMSQALITIGE-ANSQIDKKIGPEIFTVKATINL 446
Query: 410 IKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGL 468
+++++ Y +CP C KKV Q+ ++C++CN+E YR L + D T
Sbjct: 447 LRTENILYKSCP----SENCKKKVIDQANGMYRCEKCNKEFPNFKYRLLGSLSLADWTDN 502
Query: 469 TWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDE 528
WVTAF + E+ILG A+EL LK D+ + E + F ++F+++ K E +GDE
Sbjct: 503 MWVTAFNDETEKILGITAQELGELKE--NDNDAYLEKLGDVTFKSFIFKIRTKMETFGDE 560
Query: 529 QRVKITVIRADQVNYSSESRYLLDLISK 556
R++ T I V+ + Y DLI+K
Sbjct: 561 NRLRSTCI---DVSPTDCKAYNEDLITK 585
>gi|308811891|ref|XP_003083253.1| Single-stranded DNA-binding replication protein A (RPA), large (70
kD) subunit and related ssDNA-binding proteins (ISS)
[Ostreococcus tauri]
gi|116055132|emb|CAL57528.1| Single-stranded DNA-binding replication protein A (RPA), large (70
kD) subunit and related ssDNA-binding proteins (ISS)
[Ostreococcus tauri]
Length = 718
Score = 282 bits (721), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 159/469 (33%), Positives = 264/469 (56%), Gaps = 15/469 (3%)
Query: 100 FRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLD 159
+R G + +NEAP++I + LNPYQ RW ++AR+T + +LR Y+N +GDGKV F++LD
Sbjct: 89 YRQSGAVARNEAPSQIRTLNELNPYQNRWTVRARITGRLELRSYSNTKGDGKVLGFEILD 148
Query: 160 SDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVD 219
++G E++ F RF + GRVY ISK S+ A +N + +++E+ + +
Sbjct: 149 AEGTEMKCVGFGDAAVRFSNELHHGRVYEISKASIS-ASRNPKYAIHQYEMKFDQNTVFV 207
Query: 220 LCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILN 279
C + + SI K ++ F+ ++++ +A + DVIGI V I++++G ET +R +
Sbjct: 208 ECPDAERSIEKVRYKFKKVADLATAMPGEMADVIGIAYHVGELATIMKRDGGETTKRSVM 267
Query: 280 LKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQL 339
++D S ++E TLW + G +++ ++ G PV++VK+ +V +F GK++GT+ ST +
Sbjct: 268 IRDNSDAAIEFTLWDPHSVELGGQIESLIASGEKPVIAVKNARVGEFQGKNMGTVGSTSV 327
Query: 340 FINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVS-----QIKNEGLGR 394
INPD EA E+R WFD GG +A S+S G+ +S Q+ +E + +
Sbjct: 328 EINPDREEATEMRIWFDQGGADAQFTSLSGTGGGEGSGRSGGNVLSIGRIVQLGDELMAQ 387
Query: 395 SEKP-DWVTVRAFITFIK--SDSFCYTACPLMIGDRQCNKKV--TQSGNRWQCDRCNQE- 448
E +V A I IK + Y +CPLM G+RQC KK+ W C+R + E
Sbjct: 388 GEGAVAYVNTCAMIKHIKPGQEGPFYASCPLMNGERQCMKKLRTVDDTGVWSCERHSGEH 447
Query: 449 IDECDYRYLLQAQIQDQTGLTWVTAFQESGEEIL-GCPAKELYMLKYELQDDVRFGEIIR 507
I+ D+RY+ I D + WVT F GE+++ G A E+ + E D+ F + +
Sbjct: 448 IEAADWRYMFSCVIADHSAEQWVTVFGSEGEKVMSGMTAGEMRRMFDEQPDE--FEKFLV 505
Query: 508 SRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
R FN Y RLK+ + YGD R+K T+ +N+++ ++ LL+ I+K
Sbjct: 506 GRHFNMYQLRLKVAVDTYGDMPRIKCTLAEISPINFAAANKKLLEKIAK 554
>gi|145353961|ref|XP_001421265.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581502|gb|ABO99558.1| predicted protein, partial [Ostreococcus lucimarinus CCE9901]
Length = 649
Score = 282 bits (721), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 159/464 (34%), Positives = 262/464 (56%), Gaps = 11/464 (2%)
Query: 101 RNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDS 160
R+ G + +NE P I PI ALNPYQ RW I+AR+T +LR Y+NA+G+GKV F +LD+
Sbjct: 189 RDGGAVARNEQPRSITPIHALNPYQNRWTIRARITTPLELRSYSNAKGEGKVLGFQVLDA 248
Query: 161 DGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDL 220
DG EI+ CFN R + G VY ISKG++ ++ + ++EI L+ +T
Sbjct: 249 DGTEIKCVCFNDTAVRLAGELRQGLVYEISKGAI-VTPRDPRYAIYQYEIKLDNHATFVP 307
Query: 221 CTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNL 280
C + + I K + F+ +SE+++ +VDVIGI SV I++++G ET +R + +
Sbjct: 308 CPDAERDIKKMVYKFKKLSELDALNAGDMVDVIGIAYSVGDLTTIMKRDGSETSKRSVMI 367
Query: 281 KDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLF 340
+D S S+E TLW + G +++ ++ G PV++VKS ++ +F GK++GT+ ST +
Sbjct: 368 RDDSDTSIEFTLWDPHSVEIGGQIESLIASGEKPVIAVKSSRLGEFQGKNMGTVSSTMVE 427
Query: 341 INPDFAEAHELREWFDSGGKNAA-TVSISREIAAGGAKNEI--HKTVSQIKNEGLGRSEK 397
INPD +EA +R WFD GG + G E+ TV +I E + ++E
Sbjct: 428 INPDSSEATRMRVWFDQGGADKTFNSLSGSGGGGGKGSGELLSFSTVKEIGEELVAKNEG 487
Query: 398 PDWVTVRAFITFIK--SDSFCYTACPLMIGDRQCNKKVTQ--SGNRWQCDR-CNQEIDEC 452
+++ I IK ++ Y ACPL+ G+R C KK+ + S W+C+R ++I+
Sbjct: 488 VAYLSCCGIIKHIKLGAEGNFYPACPLLNGERTCQKKLRKDDSTGEWKCERHAGEKIEAA 547
Query: 453 DYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFN 512
D+RY+ D + WV+ F + G++I G A E+ + Y+ + + R+ +I +FN
Sbjct: 548 DWRYMFSMVCMDHSDEYWVSVFGDKGDKIFGISAAEMKEI-YDREPE-RYENMISDALFN 605
Query: 513 QYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
Y R+K+ + Y D R K +++ ++VNY S+ L+ I+K
Sbjct: 606 DYSLRVKVAVDNYTDVPRAKGSLVEIERVNYVDMSKKLIGKIAK 649
>gi|256070189|ref|XP_002571426.1| replication factor A 1 rfa1 [Schistosoma mansoni]
Length = 555
Score = 282 bits (721), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 175/519 (33%), Positives = 281/519 (54%), Gaps = 41/519 (7%)
Query: 54 NSGTFNSQNPGSFSTPNSGTFRAPNAGSIVRSFQPTVQ-PPYQPPPNFRNHGPILKNEAP 112
+SG S+ P + + P A + S++P + PP F P
Sbjct: 51 SSGGVKSEQPPTVAKP---------ATTTSHSYEPEQKTPPKSSTGPFSGGQPSTPGTPG 101
Query: 113 A---RIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTC 169
R+ PI +LNPYQ RW I+ARV+ K +R ++ DGK+F+F L+D + GEIRVT
Sbjct: 102 CGLPRVFPIQSLNPYQNRWTIRARVSQKSAIRTWSKQGRDGKLFNFTLVD-ESGEIRVTG 160
Query: 170 FNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEED-DSI 228
FNA VD+FY++IEV +VY +S+ +LK A K FN N++E+ L + S V C + D S+
Sbjct: 161 FNAEVDKFYDMIEVNKVYYVSRANLKAANKQFNTTNNDYEMTLHSDSQVLPCEDSDTSSL 220
Query: 229 PKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGM-ETQRRILNLKDTSGRS 287
P+ F+F I ++++ S VD++G+V I K E ++R L L D+S
Sbjct: 221 PETHFNFISIGKLDTQSPGSFVDIVGVVHECGEVQSITAKASQRELRKRELGLVDSSNCL 280
Query: 288 VELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINP-DFA 346
V LTLW G++ + V PV+ +K+ K++DF+G+S+ P++ L I+P +
Sbjct: 281 VRLTLW-------GEEAENFVGAS-HPVIVIKAAKISDFNGRSLSVSPTSSLLISPTNIP 332
Query: 347 EAHELREWFDSGGKNAATVSISREI--AAGGAKNEIHKT--------VSQIKNEGLGRSE 396
EA L+ W++ G+ + + E+ ++GGA + + +K G+G +
Sbjct: 333 EAIRLKGWYEHEGRFSNFETFRSEMVGSSGGADGVSSSSGVLGGWNLLQDVKASGVGANV 392
Query: 397 KPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYR 455
K D+ T +A + F+K ++F Y AC CNKKV GN ++C++C +E +C +R
Sbjct: 393 KADYFTCKATVVFMKKENFMYQAC----STEGCNKKVIDLGNGLYRCEKCARETPDCKWR 448
Query: 456 YLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYL 515
LL A+I D TG WVT FQ++ E +LG A++L +K QD+ + ++ FN ++
Sbjct: 449 LLLMAKIADITGDLWVTCFQDAAEVLLGQTAEKLGTIK-STQDETQLEKVFIESAFNSWI 507
Query: 516 FRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLI 554
FRL+ K + Y DE+R+++ V V+ SR LL I
Sbjct: 508 FRLRAKVDRYNDEERLRVVVADVKPVDLVDYSRRLLKAI 546
>gi|242765554|ref|XP_002340998.1| replication protein A 70 kDa DNA-binding subunit [Talaromyces
stipitatus ATCC 10500]
gi|218724194|gb|EED23611.1| replication protein A 70 kDa DNA-binding subunit [Talaromyces
stipitatus ATCC 10500]
Length = 586
Score = 281 bits (720), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 157/448 (35%), Positives = 257/448 (57%), Gaps = 22/448 (4%)
Query: 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
A I PI A++PY +W IKAR T+K ++ ++ + +GK+FS +LLD D GEIR T FN
Sbjct: 149 ATIYPIEAISPYSHKWTIKARCTSKSAIKTWHRSNSEGKLFSVNLLD-DSGEIRATGFND 207
Query: 173 VVDRFYEIIEVGRVYLISK-GSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQ 231
D Y++ + G VY IS ++ A+K F++L N++E+ E + V+ E+ DS+P+
Sbjct: 208 QCDSLYDLFQEGSVYYISSPCRVQIAKKQFSNLNNDYELTFERDTIVEKA-EDQDSVPQV 266
Query: 232 QFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGME-TQRRILNLKDTSGRSVEL 290
+F+F I +++S E ++ +DVIG++ V P+ I K + +R L L D +G SV L
Sbjct: 267 RFNFTTIGDLQSVEKDTTIDVIGVLKEVGPTSQITSKTTNKPYDKRDLTLVDNTGFSVRL 326
Query: 291 TLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHE 350
T+WG+ D V++ K KV+DF G+S+ + S + ++PD EAH
Sbjct: 327 TVWGNLATN--------FDTLPESVVAFKGVKVSDFGGRSLSLLSSGTMTVDPDIEEAHR 378
Query: 351 LREWFDSGGKN---AATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFI 407
L+ W+D+ G++ + S+S GG K + +KT++QI+ E LG SE D+ +++A I
Sbjct: 379 LKGWYDAQGRSDTFTSHASMSDGTTPGGGKLDQYKTIAQIREEQLGMSEAADFFSLKATI 438
Query: 408 TFIKSDSFCYTACPLMIGDRQCNKKVTQ-SGNRWQCDRCNQEIDECDYRYLLQAQIQDQT 466
+IK D+ Y ACP + CNKKV++ +W+C+RC++ + +YRY++ + D T
Sbjct: 439 IYIKQDNVSYPACP----SQGCNKKVSELDPGQWRCERCDKTYPKPEYRYIMLINVSDHT 494
Query: 467 GLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYG 526
G W+ F E G I+G A EL + E ++ E+ + + FR K K + YG
Sbjct: 495 GQLWLNCFDEVGRLIMGTTADEL--VNMEAENKYETSELFQEANCQTWNFRCKAKMDHYG 552
Query: 527 DEQRVKITVIRADQVNYSSESRYLLDLI 554
++QR++ + A VNYS E+ L + I
Sbjct: 553 EQQRIRYQISSAKPVNYSDEAARLANFI 580
>gi|255954847|ref|XP_002568176.1| Pc21g11440 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589887|emb|CAP96041.1| Pc21g11440 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 609
Score = 281 bits (720), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 162/449 (36%), Positives = 265/449 (59%), Gaps = 24/449 (5%)
Query: 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
A I PI A++PY +W +KAR T+K +++ ++N G+GK+FS +LLD D GEIR T FN
Sbjct: 172 ATIYPIEAISPYSNKWTMKARCTSKSNIKTWHNKNGEGKLFSVNLLD-DSGEIRATGFNE 230
Query: 173 VVDRFYEIIEVGRVYLISK-GSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQ 231
D YE+ + G VY IS ++ A+K F +L N++E+ E + V+ E++D +P+
Sbjct: 231 QCDMLYELFQEGSVYYISSPCRVQIAKKQFTNLNNDYELTFERDTIVEKAEEQND-VPQI 289
Query: 232 QFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKN-GMETQRRILNLKDTSGRSVEL 290
+F+F ++++++ E ++ +DVIG++ V + I K+ G +R L L D +G SV L
Sbjct: 290 RFNFTTVADLQTVEKDTTIDVIGVLKDVGETSQITSKSTGKPYDKRELTLVDNTGFSVRL 349
Query: 291 TLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHE 350
T+WG N V V++ K KV+DF G+S+ + S + ++PD EAH
Sbjct: 350 TIWGASANN--------FSVAPESVVAFKGVKVSDFGGRSLSLLSSGSMTVDPDIGEAHR 401
Query: 351 LREWFDSGGKN---AATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFI 407
LR W+D+ G++ + S+S + AK + KTV+Q++ E LG SE PD+ +++A +
Sbjct: 402 LRGWYDAQGRSENFTSHASLSNATNS-TAKMDRFKTVAQVREEQLGMSETPDYFSLKATV 460
Query: 408 TFIKSDS-FCYTACPLMIGDRQCNKKVTQ-SGNRWQCDRCNQEIDECDYRYLLQAQIQDQ 465
T+IK DS +CY AC CNKKVT+ +W+C++C++ + +YRY++ + D
Sbjct: 461 TYIKQDSTWCYPACL----SENCNKKVTELDPGQWRCEKCDKTHPKPEYRYVMPISVSDH 516
Query: 466 TGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELY 525
TG W++ F E+G I+G PA EL L+ + D FGE+ + + FR K + +
Sbjct: 517 TGQLWLSCFDETGRNIMGKPADELMQLRED--DPSAFGEVFQGANCQTWSFRCKANVDNF 574
Query: 526 GDEQRVKITVIRADQVNYSSESRYLLDLI 554
GD+QRV+ V + +NYS E+ L ++I
Sbjct: 575 GDQQRVRYQVSSSQAINYSDEASRLANII 603
>gi|255723748|ref|XP_002546803.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240134694|gb|EER34248.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 620
Score = 281 bits (720), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 174/520 (33%), Positives = 279/520 (53%), Gaps = 44/520 (8%)
Query: 45 PNSGTFNLQNSGTFNSQNPGSFSTPNSGTFRAPNAGSIVRSFQPTVQPPYQPPPNFRNHG 104
PN G L +S P + S P + T + V+ FQ V+ QP P N
Sbjct: 122 PNEGHLTLTKKSEGDSPAPATPSIPQATT-------ASVQPFQAQVK---QPVP--ANTA 169
Query: 105 PILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGE 164
+ AP R + I ++PYQ W IKARV+ KGDLR ++N++G+GKVFS + LD + E
Sbjct: 170 ASARGPAP-RTLSIELISPYQNNWTIKARVSYKGDLRTWSNSKGEGKVFSVNFLD-ESDE 227
Query: 165 IRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEE 224
I+ + FN +R Y +E G+VY ISK ++ A+K FN L + +E+ L+ + + C +E
Sbjct: 228 IKASAFNETAERAYRSLEEGKVYYISKARVQAARKKFNTLSHPYELTLDRDTEITECFDE 287
Query: 225 DDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKN-GMETQRRILNLKDT 283
D +PK F+F + ++++ E NSI+DVIG++ +V P I K+ G E RR +++ D
Sbjct: 288 SD-VPKLNFNFVKLDQVQNLEANSIIDVIGVLKTVLPPFTITAKSTGKEFNRRNISIVDE 346
Query: 284 SGRSVELTLWG----DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQL 339
+G SVEL LW DF +EG V++ K KV DF+GK++ + +
Sbjct: 347 TGFSVELGLWNNTAMDFSVEEGT------------VVAFKGCKVTDFNGKTLSLTQAGSI 394
Query: 340 FINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPD 399
NP E+ L+ W+D+ G N ++ + +G + +++Q E +G +KPD
Sbjct: 395 VPNPGTPESFTLKGWYDNVGVNEQFKTLKTDKNSGDRIAQ-RVSIAQALEEHVGTGDKPD 453
Query: 400 WVTVRAFITFIKSDSFCYTACPLMI--GD-----RQCNKKVTQSGN--RWQCDRCNQEID 450
+ +V+A ITF K D+F Y AC + GD + CNKK+ + W+C++C+ D
Sbjct: 454 YFSVKASITFCKPDNFAYPACTNQVQHGDGSRPPQLCNKKLIYQDHDGTWRCEKCDANYD 513
Query: 451 ECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRV 510
+ YRY+L + D TG W+T F E +++L A EL K E D I S +
Sbjct: 514 QAAYRYILSCSVTDSTGQMWLTLFDEQAKKLLDIDATELQRKKEENPDAA--SAIFTSVL 571
Query: 511 FNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYL 550
F +++FR++ +++ Y DE + + +NY+SE+ +L
Sbjct: 572 FKEFVFRVRARQDTYNDELKTRYQAAGLYDINYTSEAEFL 611
>gi|261187451|ref|XP_002620149.1| replication factor rfa1 [Ajellomyces dermatitidis SLH14081]
gi|239594199|gb|EEQ76780.1| replication factor rfa1 [Ajellomyces dermatitidis SLH14081]
gi|239609246|gb|EEQ86233.1| replication factor rfa1 [Ajellomyces dermatitidis ER-3]
gi|327356481|gb|EGE85338.1| replication factor [Ajellomyces dermatitidis ATCC 18188]
Length = 603
Score = 281 bits (719), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 167/449 (37%), Positives = 263/449 (58%), Gaps = 21/449 (4%)
Query: 111 APARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCF 170
A A I PI AL+PY +W IKAR T K ++ ++N G+GK+FS +LLD D GEIR T F
Sbjct: 165 AHANIYPIEALSPYSHKWTIKARCTNKSAIKTWHNKNGEGKLFSVNLLD-DSGEIRATAF 223
Query: 171 NAVVDRFYEIIEVGRVYLISK-GSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIP 229
D Y + E G VY IS ++ A+K FN+L NE+E+ E + V+ E++D +P
Sbjct: 224 KDQCDSLYGVFEEGSVYYISSPCRVQIAKKAFNNLNNEYELTFEKDTVVEKAEEQND-VP 282
Query: 230 KQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGME-TQRRILNLKDTSGRSV 288
+ +F+F +I+ ++S E + +DVIG++ V + IL K + +R L L D +G SV
Sbjct: 283 QIRFNFTNIANLQSVEAGTTIDVIGVLKDVGETSQILSKTTSKPYDKRDLTLVDNTGYSV 342
Query: 289 ELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEA 348
LT+WG+ KE + E V++ K KV+D++G+S+ + S + ++PD +A
Sbjct: 343 RLTVWGNTA-KEFDSVPE-------SVVAFKGVKVSDYNGRSLSLLSSGSMTVDPDIEDA 394
Query: 349 HELREWFDSGGKNAATVSI-SREIAAG-GAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAF 406
H+L+ W+D+ G++ S S AAG G + KT+ Q+ LG SEKPD+ +V+A
Sbjct: 395 HKLKGWYDAQGRSETFASHDSMSNAAGFGDRASSFKTIVQVHEGNLGMSEKPDYFSVKAT 454
Query: 407 ITFIKSDSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQ 465
+ +IK DS Y AC + D+ CNKKV Q N +W+C+RC+Q ++RY+L + D
Sbjct: 455 VVYIKQDSMAYPAC---LTDK-CNKKVLQDDNGQWRCERCDQSFPHPEHRYILSVNVCDH 510
Query: 466 TGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELY 525
TG W++ F E G+ ILG A EL LK D+ + E+++ + F+ + K + +
Sbjct: 511 TGAMWLSCFDEVGKLILGTSANELMELKE--NDERAYEELVQKANCRAWNFKCRAKMDNF 568
Query: 526 GDEQRVKITVIRADQVNYSSESRYLLDLI 554
D+QRV+ V+ ++YS+ES L ++I
Sbjct: 569 QDQQRVRYQVLSVSAIDYSAESARLAEMI 597
>gi|296416099|ref|XP_002837718.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295633601|emb|CAZ81909.1| unnamed protein product [Tuber melanosporum]
Length = 614
Score = 281 bits (718), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 158/462 (34%), Positives = 255/462 (55%), Gaps = 20/462 (4%)
Query: 95 QPPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFS 154
QP R+ P + I PI +L+PYQ RW I+ARVT K ++ + N+ DG++F+
Sbjct: 167 QPTTTARSSAP---SATRPNIYPIESLSPYQNRWTIRARVTYKSPIKLWQNSNRDGRLFN 223
Query: 155 FDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEA 214
LLD + GE+R T FN VD FYE+++ G+VY IS + A+K F+++ N++E+ E
Sbjct: 224 VTLLD-ESGEVRATGFNDQVDSFYEVLQEGQVYYISNCKVNFAKKQFSNINNDYELAFER 282
Query: 215 TSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMET- 273
+ ++ C + DD IP +F+F SE+ES +N+ I+DVIG++ V I KN ++
Sbjct: 283 NTEIEKCNDVDDGIPMARFNFVQFSELESIQNDGIIDVIGVIKEVGEVASIQSKNTQKSY 342
Query: 274 QRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGT 333
+R + L D SG SV +T WG +L E+V + K KV+++ G+S+
Sbjct: 343 TKRDVTLVDKSGYSVHITTWGKSAEDWETQLDEIV--------AFKGVKVSEYGGRSLSM 394
Query: 334 IPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLG 393
+ S+ + +NPD E+H LR W+D G+ T ++ N+ +KT+SQI++E LG
Sbjct: 395 LHSSTMTVNPDIDESHALRGWYDGQGR-GETFQSHHTGSSAVRTNDPYKTLSQIRDENLG 453
Query: 394 RSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQ-SGNRWQCDRCNQEIDEC 452
E PD T +A I +IK+++F Y AC +CNKKV + + +W+C++C+ C
Sbjct: 454 MGEDPDIFTTKATIVYIKNENFSYPACLT----PKCNKKVVEIAEGQWKCEKCDITHPNC 509
Query: 453 DYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFN 512
+RY++ D GL W + F + G I+G A EL L + F +
Sbjct: 510 QHRYIMTISCSDAFGLAWFSCFDDVGIMIMGMTADELVELNNQ-SGGPAFADAFLQANCK 568
Query: 513 QYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLI 554
Y+FR + K ++ +QRV+ V+ A VN++ E+ L+ I
Sbjct: 569 AYVFRCRAKMDVSQGQQRVRYQVLNAAPVNFALEAHKLIGQI 610
>gi|322710190|gb|EFZ01765.1| replication factor-A protein 1 [Metarhizium anisopliae ARSEF 23]
Length = 595
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 159/447 (35%), Positives = 256/447 (57%), Gaps = 23/447 (5%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
I PI L+P+Q +W IKARVT K D++ ++ G+GK+FS +LLD + GEI+ T FN
Sbjct: 162 IYPIEGLSPFQHKWTIKARVTMKSDIKTWHKPTGEGKLFSVNLLD-ESGEIKATGFNDQC 220
Query: 175 DRFYEIIEVGRVYLISK-GSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQF 233
D FY++++ G VY IS + A+K F++L N++EI E + ++ E+ ++P+ +F
Sbjct: 221 DAFYDLLQEGSVYYISSPCRVNLAKKQFSNLPNDYEITFERDTRIEK-AEDQTNVPQVRF 279
Query: 234 SFRHISEIESAENNSIVDVIGIVISVNPSVPILRK-NGMETQRRILNLKDTSGRSVELTL 292
+F I E+++ E ++ VDVIG++ V I K +G Q+R L L D +G SV +T+
Sbjct: 280 NFCTIQELQNVEKDNTVDVIGVLKDVGEVSEITSKASGKPFQKRELTLVDDTGYSVRVTV 339
Query: 293 WGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELR 352
WG N D V++ K KV+DF GKS+ + S + ++PD +AH L+
Sbjct: 340 WGKTANS--------FDANPESVVAFKGTKVSDFGGKSLSLLSSGTMTVDPDIPDAHRLK 391
Query: 353 EWFDSGGKN---AATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITF 409
W+DS G+ A +++ AGG NE +KT++Q+K E LG + P + +++A I F
Sbjct: 392 GWYDSSGRTDNFATHQNMASMGNAGGRANE-NKTIAQVKEENLGM-DAPAYYSIKATIVF 449
Query: 410 IKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLT 469
+K ++FCY AC CNKKV ++G+ W C++C+ + DYRY++ + D T
Sbjct: 450 VKQENFCYPAC----SKEGCNKKVVETGDGWYCEKCSVSHERPDYRYIVSLNVADHTSHQ 505
Query: 470 WVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQ 529
W+ F E+GE I G A +L LK DD +F + + FR + K + +GD Q
Sbjct: 506 WLNCFNETGEAIFGMSANQLMELKD--NDDAKFMAAFEAVNCKKLNFRCRAKMDNFGDTQ 563
Query: 530 RVKITVIRADQVNYSSESRYLLDLISK 556
RV+ ++ A +++ SE L +LI +
Sbjct: 564 RVRYQIMSAAFLDFKSEGNKLAELIKQ 590
>gi|448514363|ref|XP_003867094.1| Rfa1 DNA replication factor A [Candida orthopsilosis Co 90-125]
gi|380351432|emb|CCG21656.1| Rfa1 DNA replication factor A [Candida orthopsilosis Co 90-125]
Length = 628
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 155/456 (33%), Positives = 258/456 (56%), Gaps = 31/456 (6%)
Query: 111 APARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCF 170
APARI PI ++PYQ W IKARV+ KG+LR ++NA+G+GKVFS + LD + EI+ + F
Sbjct: 179 APARISPIETISPYQNTWTIKARVSYKGELRSWSNAKGEGKVFSVNFLD-ESDEIKASAF 237
Query: 171 NAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPK 230
N +R Y ++E G+VY ISK + A+K FN+L + +E+ LE + + C +E D +PK
Sbjct: 238 NESAERAYNLLEEGKVYFISKAKVGAARKKFNNLTHPYELTLEKDTEITECFDESD-VPK 296
Query: 231 QQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKN-GMETQRRILNLKDTSGRSVE 289
F+F + ++++ E N+I+DV+G + VNP I K+ G RR + + D +G +V+
Sbjct: 297 LNFNFVKLDKVQNLEPNAIIDVLGALKIVNPPFQITAKSTGKAFDRRDITIVDETGFAVD 356
Query: 290 LTLWG----DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDF 345
+ LW DF +EG V++ K KV+DF+G+S+ + + NP
Sbjct: 357 VGLWNNTAVDFSVEEGT------------VIAFKGCKVSDFNGRSLSLTQAGSIVPNPGT 404
Query: 346 AEAHELREWFDSGGKNAATVSISREIAAGGAKNEI--HKTVSQIKNEGLG-RSEKPDWVT 402
E+++L+ WFD+ G S+ E A + + + KT++Q++ E SE+ + T
Sbjct: 405 PESYQLKGWFDNIGVKENFKSMKTETNASSSIDRLANRKTIAQVEEENNNLDSEQSGYFT 464
Query: 403 VRAFITFIKSDSFCYTACPLMIGDRQ--------CNKKVTQSGNRWQCDRCNQEIDECDY 454
++A +F K ++F Y AC +I + CNKK+ ++W+C+RC+ DE Y
Sbjct: 465 IKACFSFTKPENFAYPACTNIIANTTDSTKPGLPCNKKLAPVNDKWRCERCDLSYDEPTY 524
Query: 455 RYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQY 514
RY+L I D TG W T F E +++LG A EL + E + + E I F +Y
Sbjct: 525 RYILYISITDATGQLWTTLFDEQAKKLLGIDANELMKMSNE-NEKMVVAEYISRAYFKEY 583
Query: 515 LFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYL 550
FRL++K++ + D+ +++ + ++Y++E +L
Sbjct: 584 NFRLRVKQDTFNDQLKLRYQCVGLSDIDYNTECEFL 619
>gi|212528756|ref|XP_002144535.1| replication protein A 70 kDa DNA-binding subunit [Talaromyces
marneffei ATCC 18224]
gi|210073933|gb|EEA28020.1| replication protein A 70 kDa DNA-binding subunit [Talaromyces
marneffei ATCC 18224]
Length = 601
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 160/455 (35%), Positives = 263/455 (57%), Gaps = 27/455 (5%)
Query: 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
A I PI A++PY +W IKAR T+K ++ ++ + +GK+FS +LLD D GEI+ T FN
Sbjct: 164 ATIYPIEAISPYSHKWTIKARCTSKSAIKTWHRSNSEGKLFSVNLLD-DSGEIKATGFND 222
Query: 173 VVDRFYEIIEVGRVYLISK-GSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQ 231
D Y+I + G VY IS ++ A+K F++L N++E+ E + V+ E+ DS+P+
Sbjct: 223 QCDLLYDIFQEGSVYYISSPCRVQIAKKQFSNLNNDYELTFEKDTIVEKA-EDQDSVPQV 281
Query: 232 QFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGME-TQRRILNLKDTSGRSVEL 290
+F+F I +++S E ++ +DVIG++ V + I K + +R L L D +G SV L
Sbjct: 282 RFNFTTIGDLQSVEKDTTIDVIGVLKEVGQTSQITSKTTNKPYDKRDLTLVDNTGFSVRL 341
Query: 291 TLWGDFCNKEGQKLQEMVDVGFFP--VLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEA 348
T+WG+ + P V++ K KV+DF G+S+ + S ++PD EA
Sbjct: 342 TVWGNLA----------TNFNTLPESVVAFKGVKVSDFGGRSLSLLSSGTFTVDPDIEEA 391
Query: 349 HELREWFDSGGKN---AATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRA 405
H L+ W+D+ G++ A+ S+S + +GG K + +KT++QI+ E LG SE D+ +++A
Sbjct: 392 HRLKGWYDAQGRSDTFASHASMSDGVTSGGGKLDQYKTIAQIREEQLGMSEAADFFSLKA 451
Query: 406 FITFIKSDSFCYTACPLMIGDRQCNKKVTQ-SGNRWQCDRCNQEIDECDYRYLLQAQIQD 464
I +IK D+ Y ACP + CNKKV++ +W+C+RC++ + +YRY++ + D
Sbjct: 452 TIIYIKQDNVSYPACP----SQDCNKKVSELDPGQWRCERCDKTYPKPEYRYIMLINVSD 507
Query: 465 QTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEEL 524
TG W+ F E G I+G A +L + E ++ E+ + + FR K K +
Sbjct: 508 HTGQLWLNCFDEVGRLIMGTTADDL--VNMEAENKYESSELFQEANCQTWNFRCKAKMDH 565
Query: 525 YGDEQRVKITVIRADQVNYSSESRYLLDLI-SKSF 558
YG++QR++ + A VNYS E+ L +LI S SF
Sbjct: 566 YGEQQRIRYQISSARPVNYSDEATRLANLIQSYSF 600
>gi|194764875|ref|XP_001964553.1| GF23244 [Drosophila ananassae]
gi|190614825|gb|EDV30349.1| GF23244 [Drosophila ananassae]
Length = 603
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 168/441 (38%), Positives = 245/441 (55%), Gaps = 24/441 (5%)
Query: 117 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDR 176
PI++L+PYQ +W IKARVT+K +R ++NARG+GK+FS DL+D + GEIR T F D+
Sbjct: 168 PISSLSPYQNKWVIKARVTSKTAIRTWSNARGEGKLFSMDLMD-ESGEIRATAFKEQCDK 226
Query: 177 FYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDD-SIPKQQFSF 235
FY++I+V VY SK LKPA K ++ L N +E+ + V LC + DD +IP +++
Sbjct: 227 FYDLIQVDSVYFFSKCQLKPANKQYSQLDNAYEMTFTGETIVQLCEDADDGAIPDIKYNL 286
Query: 236 RHISEIESAENNSIVDVIGIVISVNPSVPIL-RKNGMETQRRILNLKDTSGRSVELTLWG 294
ISE+ EN + VD IGI V + R E ++R L L D S ++ LTLWG
Sbjct: 287 VPISEVSGMENKAAVDTIGICKEVGELQSFVSRTTNKEFKKRDLTLVDMSNSAINLTLWG 346
Query: 295 DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLF-INPDFAEAHELRE 353
D +Q PV+ VK ++N+F+G ++ + INPD EAH+LR
Sbjct: 347 DDAVNFDGHVQ--------PVILVKGTRINEFNGGKSLSLGGGSIMKINPDIPEAHKLRG 398
Query: 354 WFDS-GGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKS 412
WFD+ GG N A + +R GG + T + LG +KPD+ +A + +K
Sbjct: 399 WFDNGGGDNIANMVSAR--TGGGNFSTDWMTFKDARERNLGSGDKPDYFQCKAVVHIVKQ 456
Query: 413 DSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWV 471
++ Y ACP CNKKV GN +++C+RCN YR L+ I D T WV
Sbjct: 457 ENAFYRACP----QTDCNKKVVDEGNDQYRCERCNALYPNFKYRLLVNMSIGDWTSNRWV 512
Query: 472 TAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRV-FNQYLFRLKIKEELYGDEQR 530
T F E GE++LG ++E + L++D E I S + F ++F+L+ K E YGD R
Sbjct: 513 TCFNEIGEQLLGHTSQE---VGEALENDAAKAEQIFSSLNFTSHIFKLRCKNESYGDTTR 569
Query: 531 VKITVIRADQVNYSSESRYLL 551
K+TV A +N+ ++YLL
Sbjct: 570 NKLTVQSAAPINHKEYNKYLL 590
>gi|398396686|ref|XP_003851801.1| hypothetical protein MYCGRDRAFT_109907 [Zymoseptoria tritici
IPO323]
gi|339471681|gb|EGP86777.1| hypothetical protein MYCGRDRAFT_109907 [Zymoseptoria tritici
IPO323]
Length = 646
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 158/449 (35%), Positives = 262/449 (58%), Gaps = 19/449 (4%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
I PI A++PY +W IKAR T KGD++ ++N G+GK+FS + LD D GEIR T FN V
Sbjct: 199 ITPIEAVSPYTHKWTIKARCTHKGDIKTWHNKNGEGKLFSVNFLD-DSGEIRATGFNDSV 257
Query: 175 DRFYEIIEVGRVYLISK-GSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQF 233
D++YE + G VY IS ++ A+K F+++ N++E+ E +TV+ E+ D +P+ ++
Sbjct: 258 DQWYEFLTEGNVYYISSPCKVQLAKKQFSNVNNDYELTFERDTTVEK-AEDHDGVPQVRY 316
Query: 234 SFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGME-TQRRILNLKDTSGRSVELTL 292
+F I+ +++ + ++ +D IG++ V I+ K+ + +R L L D SG +V LT+
Sbjct: 317 NFTDIAALQNVDKDTTIDCIGVLQEVGEVNEIVSKSTNKPYSKRELTLVDNSGYNVRLTV 376
Query: 293 WGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELR 352
WG K E D V++ K KV+DF G+S+ + S + I+PD EA++L+
Sbjct: 377 WG--------KTAESFDARPESVVAFKGVKVSDFGGRSLSLLSSGSMNIDPDIDEAYKLK 428
Query: 353 EWFDSGGKNAATVSISREIAAGGAKN----EIHKTVSQIKNEGLGRSEKPDWVTVRAFIT 408
W+D G+N S + +AA GA + KT++Q+ ++ G+SE DW +++A I
Sbjct: 429 GWYDGEGRNGNFASHANSMAAAGATSGGRPSDFKTIAQVYDDKDGQSETTDWFSIKATIV 488
Query: 409 FIKSDSFCYTACPLMIGDRQCNKKVTQSG-NRWQCDRCNQEIDECDYRYLLQAQIQDQTG 467
++K DSF Y AC + CNKKVT+ +W+C++C D +YRY++ + D TG
Sbjct: 489 YVKQDSFAYPAC-RTTDPKPCNKKVTEHDEGQWRCEQCQMTWDRPNYRYIMSVNVSDHTG 547
Query: 468 LTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGD 527
W++ F E G +++G A +L LK E DD R GE ++F+ K K + + D
Sbjct: 548 QIWLSCFDEVGVQVMGMSANDLMALKEE-GDDKRVGEAFSDANCKSFIFKCKAKMDTFQD 606
Query: 528 EQRVKITVIRADQVNYSSESRYLLDLISK 556
+QRV+ V + ++Y+ E++ L D+I +
Sbjct: 607 QQRVRYQVQYVNPIDYAREAKKLADIIKQ 635
>gi|302690362|ref|XP_003034860.1| hypothetical protein SCHCODRAFT_50382 [Schizophyllum commune H4-8]
gi|300108556|gb|EFI99957.1| hypothetical protein SCHCODRAFT_50382 [Schizophyllum commune H4-8]
Length = 628
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 171/505 (33%), Positives = 269/505 (53%), Gaps = 32/505 (6%)
Query: 59 NSQNPGSFSTPNSGTFRAPNAGSIVRSFQPTVQPPYQPPPNFRNHGPILKNEAPARIIPI 118
N Q+P S P + AP+ ++ R+ P Q P QP + +N P ++ I PI
Sbjct: 147 NGQSPAPQSKPAA----APSTSTVPRTATP--QLPAQPHRDSKNTAPNGRS-----IYPI 195
Query: 119 AALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFY 178
L+PYQ W IKARVT K D+RR++N RG+G++F+ L+D D GEIR T FN VD Y
Sbjct: 196 EGLSPYQNNWTIKARVTQKSDIRRWSNQRGEGRLFNVTLMD-DTGEIRATGFNQAVDELY 254
Query: 179 EIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHI 238
+ E G+VY +SK + A+K F+++ N++E+ LE ++ V+ C E D +P +++F +
Sbjct: 255 DKFEEGKVYYVSKARVNLAKKKFSNVNNDYELSLERSTEVEPCLEAAD-VPTIKYNFVKL 313
Query: 239 SEIESAENNSIVDVIGIVISVNPSVPILRKNGMET-QRRILNLKDTSGRSVELTLWGDFC 297
++ +S DVIG+V V I K T ++R L L D +G SV +TLWG+
Sbjct: 314 DALQEVPKDSNCDVIGVVKEVGELSEITTKTTNRTMKKRELTLVDDTGYSVRVTLWGNTA 373
Query: 298 NKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDS 357
K ++ PV++ K KV DF G+S+ + S+ +F+NPD EA LR WFD
Sbjct: 374 EKYEEEGH--------PVIAFKGVKVGDFGGRSLSMLMSSMMFVNPDTTEAFHLRGWFDD 425
Query: 358 GGKN---AATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDS 414
GK ++ S G + +T+ +IKN LG ++PD+ + RA I IK ++
Sbjct: 426 DGKTLQFSSHTSGGGAGTGRGFDRDDQRTLMEIKNANLGMGDQPDYFSSRATIMHIKDNN 485
Query: 415 FCYTACPLMIGDRQCNKKVTQSG-NRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTA 473
F Y AC CNKKV ++G W+C++CN DYR++LQ + D G W
Sbjct: 486 FAYPACR----SPDCNKKVVENGPGEWRCEKCNVSHSSPDYRFMLQLAVADLHGQAWFQG 541
Query: 474 FQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKI 533
F ++G+ I A E+ +K DD F + + F + K + + DE RV+
Sbjct: 542 FNDAGQVIFNRSANEIMQMKS--GDDDGFLRAFAQANYQAFNFNCRAKADTWNDETRVRY 599
Query: 534 TVIRADQVNYSSESRYLLDLISKSF 558
+ + + V++ E++Y+ D + +
Sbjct: 600 GITKVEPVDFVKEAQYMRDKLQSEW 624
>gi|449299904|gb|EMC95917.1| hypothetical protein BAUCODRAFT_71964 [Baudoinia compniacensis UAMH
10762]
Length = 613
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 157/447 (35%), Positives = 260/447 (58%), Gaps = 22/447 (4%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
I PI AL+PY RW IKAR T KG+++ ++N G+GK+FS + LD D GEIR T FN V
Sbjct: 170 IHPIEALSPYAHRWTIKARCTHKGEIKTWHNKNGEGKLFSVNFLD-DSGEIRATGFNDAV 228
Query: 175 DRFYEIIEVGRVYLISK-GSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQF 233
D++YE+++ G VY +S + A+K F++L N++E+ E + ++ EE D +P+ ++
Sbjct: 229 DQWYEVLQEGSVYYVSSPCKVGLAKKQFSNLNNDYELTFERDTQIEK-AEEQDGVPQVRY 287
Query: 234 SFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGME-TQRRILNLKDTSGRSVELTL 292
+F +++++S + +S +D IGI+ V I+ K + +R L L D + +V LT+
Sbjct: 288 NFTSLADLQSVDKDSTIDCIGILKEVGEVSEIVGKTSSKPYSKRELTLVDNTNYNVRLTV 347
Query: 293 WGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELR 352
WG K E D V++ K KV+DF G+S+ + S + I+PD EA++L+
Sbjct: 348 WG--------KTAENFDAQPESVVAFKGLKVSDFGGRSLSLLSSGSMNIDPDIDEAYKLK 399
Query: 353 EWFDSGGKNAATVS----ISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFIT 408
W+D+ G+N S +S +A G +KT++Q+++E LG E DW +V+A I
Sbjct: 400 GWYDASGRNEEFASHANTMSTAVATAGGDRNAYKTIAQVRDENLGMGEDTDWFSVKATII 459
Query: 409 FIKSDSFCYTACPLMIGDRQCNKKVTQSG-NRWQCDRCNQEIDECDYRYLLQAQIQDQTG 467
++K D+F Y AC I D CNKKV + +W+C++C+ D+RY++ + D TG
Sbjct: 460 YVKQDNFAYPAC---ISDG-CNKKVIEHEPGQWRCEKCDTSHPRADWRYIMSVNVSDHTG 515
Query: 468 LTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGD 527
W++ F E G+ I+G EL+ L+ E ++ + E + ++F+ K K + + D
Sbjct: 516 QMWLSCFNEVGQLIMGMDGNELHALQ-EAMEEKKLAEAFQEANCKTFVFKCKAKMDTFQD 574
Query: 528 EQRVKITVIRADQVNYSSESRYLLDLI 554
+QRV+ V A+ +N+ ES+ L DLI
Sbjct: 575 QQRVRYQVQYANPLNFQIESKKLADLI 601
>gi|354546965|emb|CCE43698.1| hypothetical protein CPAR2_213410 [Candida parapsilosis]
Length = 644
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 157/462 (33%), Positives = 261/462 (56%), Gaps = 38/462 (8%)
Query: 111 APARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCF 170
APARI PI ++PYQ W IKARV+ KG+LR ++NA+G+GKVFS + LD + EI+ + F
Sbjct: 190 APARISPIETISPYQNTWTIKARVSYKGELRSWSNAKGEGKVFSINFLD-ESDEIKASAF 248
Query: 171 NAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPK 230
N +R Y ++E G+VY ISK + A+K FN+L + +E+ LE + + C +E D +PK
Sbjct: 249 NESAERAYNLLEEGKVYYISKAKVGAARKKFNNLTHPYELTLEKDTEITECFDESD-VPK 307
Query: 231 QQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKN-GMETQRRILNLKDTSGRSVE 289
F+F + +I++ E N+IVDV+G + VNP I K+ G RR + + D +G +V+
Sbjct: 308 LNFNFVKLDKIQNLEPNAIVDVLGALKVVNPPFQITAKSTGKAFDRRDITIVDETGFAVD 367
Query: 290 LTLWG----DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDF 345
+ LW DF +EG V++ K KV+DF+G+S+ + + NP
Sbjct: 368 VGLWNNTAVDFSVEEGT------------VIAFKGCKVSDFNGRSLSLTQAGSIVPNPGT 415
Query: 346 AEAHELREWFDSGGKNAATVSISREIAAGGAKNEI--HKTVSQIKNE------GLGRSEK 397
E+++L+ WFD+ G S+ E A + + + KT++Q++ E G + ++
Sbjct: 416 PESYQLKGWFDNVGVKENFKSMKTETNASSSLDRLANRKTIAQVEEETNNNIDGGDQQQQ 475
Query: 398 PDWVTVRAFITFIKSDSFCYTACPLMIGDRQ--------CNKKVTQSGNRWQCDRCNQEI 449
+ TV+A +F K ++F Y AC ++ + CNKK+ + ++W+C+RC+
Sbjct: 476 SGYFTVKACFSFTKPENFAYPACTNIVSNNTDSSKPGLPCNKKLVEVNDKWRCERCDLSY 535
Query: 450 DECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVR-FGEIIRS 508
DE YRY+L I D TG W T F E +++LG A EL +K L ++ E I
Sbjct: 536 DEPTYRYILYISITDATGQLWTTLFDEQAKKLLGIDANEL--MKLSLPNESHAVAEYISR 593
Query: 509 RVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYL 550
F +Y FRL++K++ + D+ +++ + ++Y++E +L
Sbjct: 594 AYFKEYNFRLRVKQDTFNDQLKLRYQCVGLSDIDYNTECEFL 635
>gi|400598555|gb|EJP66264.1| replication factor-a protein 1 [Beauveria bassiana ARSEF 2860]
Length = 597
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 157/447 (35%), Positives = 257/447 (57%), Gaps = 22/447 (4%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
I PI L+P+ +W IKARVT+K D++ ++ A G+GK+FS +LLD + GEI+ T FN
Sbjct: 163 IYPIEGLSPFSHKWTIKARVTSKSDIKTWHKATGEGKLFSVNLLD-ESGEIKATGFNDQC 221
Query: 175 DRFYEIIEVGRVYLISK-GSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQF 233
D FYE+++ G VY IS + A+K F++L N++E+ E + ++ E+ ++P+ +F
Sbjct: 222 DAFYELLQEGSVYYISTPCRVNLAKKQFSNLPNDYELAFERDTVIEK-AEDQTNVPQVRF 280
Query: 234 SFRHISEIESAENNSIVDVIGIVISVNPSVPIL-RKNGMETQRRILNLKDTSGRSVELTL 292
+F I E++S E ++ VD+IG++ I+ +K G Q+R L + D +G SV +T+
Sbjct: 281 NFSTIEELQSVEKDNTVDIIGVLKEAGEVSEIVSKKTGAPYQKRELTMVDDTGYSVRVTI 340
Query: 293 WGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELR 352
WG K D V++ K KV+DF GKS+ + S + ++PD +AH L+
Sbjct: 341 WG--------KTASSFDAQPESVIAFKGTKVSDFGGKSLSLLSSGTISVDPDIPDAHRLK 392
Query: 353 EWFDSGGKNA--ATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFI 410
W+DS G+N AT + A +N+ KT++Q+K E LG ++ + T++A I F+
Sbjct: 393 GWYDSSGRNDTFATHQNLASVGAAAGRNDEIKTIAQVKEENLGVDDQA-YYTIKATIVFV 451
Query: 411 KSDSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQTGLT 469
K D+FCY AC + CNKKV G+ W+C++CN D+ +YRY+L + D T
Sbjct: 452 KQDNFCYPACL----SQGCNKKVQDMGDGTWRCEKCNLSHDKPEYRYVLSFNVADHTSHQ 507
Query: 470 WVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQ 529
W++ F +SG I+G A EL LK D+ +F + + FR + + + YG+ Q
Sbjct: 508 WLSCFDDSGRAIVGMSADELMELKE--NDEAKFLAAFEAVNCKKLQFRCRARMDNYGEVQ 565
Query: 530 RVKITVIRADQVNYSSESRYLLDLISK 556
RV+ V+ A +++ SE L ++I +
Sbjct: 566 RVRYQVMTASFLDFKSEGAKLAEMIKQ 592
>gi|358053972|dbj|GAA99937.1| hypothetical protein E5Q_06640 [Mixia osmundae IAM 14324]
Length = 605
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 162/444 (36%), Positives = 248/444 (55%), Gaps = 20/444 (4%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
I PI L+PYQ +W IKARVT K D+R Y NA+GDGKVFS +LLD + GEIR T FN V
Sbjct: 171 IYPIEGLSPYQNKWTIKARVTLKSDIRHYTNAKGDGKVFSVNLLD-ESGEIRATGFNDAV 229
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQ-KNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQF 233
D + + E G+VY +SK + ++ K +N NE+EI E + V+LCT+ D +P+ ++
Sbjct: 230 DNLFNVFEEGKVYYVSKARVNISKNKQYNPTNNEYEIMFERDTQVELCTDTTD-LPQVKY 288
Query: 234 SFRHISEIESAENNSIVDVIGIVISVNPSVPILRK-NGMETQRRILNLKDTSGRSVELTL 292
+F ++S++ + E N+++DV+G+V V I+ K + +R + L D S SV +TL
Sbjct: 289 NFVNLSDLTTQEANAMIDVLGVVKEVGELSSIVSKATSKQIPKREIVLIDQSEFSVRMTL 348
Query: 293 WGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELR 352
WG + E P+++ K KV DF G+S+ + S+ + ++PD AH L
Sbjct: 349 WG--------RQAEQFSAPDQPIIAFKGVKVGDFGGRSLSMVSSSTMAVDPDIQPAHSLS 400
Query: 353 EWFDSGGKNAATVSI-SREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIK 411
W + G+ + S AGG K E KT++QIK EGLG + PD +RA I ++K
Sbjct: 401 GWMKAVGETKTFQTFKSTGGGAGGFKEEEAKTIAQIKEEGLGMQDTPDNFFLRATIVYVK 460
Query: 412 SDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTW 470
DS Y ACP CNKKVT S ++C++C+++ +RY++ + D TG W
Sbjct: 461 KDSLSYPACP----KEGCNKKVTPTSEGSFRCEKCSEDFPAPQHRYVMSLSVLDHTGQLW 516
Query: 471 VTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQR 530
++AF ++G IL A ++ L+ E D+ F I Y F + + E + D R
Sbjct: 517 LSAFDDAGRLILDHSADDIERLRDE--DEQAFVGAIWRGSGKAYNFACRARTETFQDTSR 574
Query: 531 VKITVIRADQVNYSSESRYLLDLI 554
V+ + RA V+Y + S +L+ I
Sbjct: 575 VRYQINRATPVDYVAASAWLVKQI 598
>gi|195330772|ref|XP_002032077.1| GM26360 [Drosophila sechellia]
gi|194121020|gb|EDW43063.1| GM26360 [Drosophila sechellia]
Length = 603
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 161/440 (36%), Positives = 247/440 (56%), Gaps = 22/440 (5%)
Query: 117 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDR 176
PI++L+PYQ +W IKARVT+K +R ++NARG+GK+FS DL+D + GEIR T F D+
Sbjct: 168 PISSLSPYQNKWVIKARVTSKSGIRTWSNARGEGKLFSMDLMD-ESGEIRATAFKEQCDK 226
Query: 177 FYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTE-EDDSIPKQQFSF 235
FY++I+V VY ISK LKPA K ++ L N +E+ + V LC + +DD IP+ +++
Sbjct: 227 FYDLIQVDSVYYISKCQLKPANKQYSSLNNAYEMTFSGETVVQLCEDTDDDPIPEIKYNL 286
Query: 236 RHISEIESAENNSIVDVIGIVISVNPSVP-ILRKNGMETQRRILNLKDTSGRSVELTLWG 294
IS++ EN + VD IGI V + R E ++R + L D S ++ LTLWG
Sbjct: 287 VPISDVSGMENKAAVDTIGICKEVGELQSFVARTTNKEFKKRDITLVDMSNSAISLTLWG 346
Query: 295 DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLF-INPDFAEAHELRE 353
D +Q PV+ VK ++N+F+G ++ + INPD EAH+LR
Sbjct: 347 DDAVNFDGHVQ--------PVILVKGTRINEFNGGKSLSLGGGSIMKINPDIPEAHKLRG 398
Query: 354 WFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSD 413
WFD+GG ++ +S G E T+ + LG +KPD+ +A + +K +
Sbjct: 399 WFDNGGGDSVANMVSARTGGGSFSTE-WMTLKDARARNLGSGDKPDYFQCKAVVHIVKQE 457
Query: 414 SFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVT 472
+ Y ACP CNKKV GN +++C++CN YR L+ I D T WV+
Sbjct: 458 NAFYRACP----QSDCNKKVVDEGNDQFRCEKCNALFPNFKYRLLINMSIGDWTSNRWVS 513
Query: 473 AFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRV-FNQYLFRLKIKEELYGDEQRV 531
+F E GE++LG ++E + L++D E I S + F ++F+L+ K E+YGD R
Sbjct: 514 SFNEVGEQLLGHTSQE---VGEALENDPAKAEQIFSALNFTSHIFKLRCKNEVYGDMTRN 570
Query: 532 KITVIRADQVNYSSESRYLL 551
K+TV +N+ +++LL
Sbjct: 571 KLTVQSVAPINHKEYNKHLL 590
>gi|344230771|gb|EGV62656.1| hypothetical protein CANTEDRAFT_115222 [Candida tenuis ATCC 10573]
Length = 591
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 149/446 (33%), Positives = 255/446 (57%), Gaps = 23/446 (5%)
Query: 114 RIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAV 173
RI I +L+PYQ W IKARV+ KGDLR ++NA+G GK+F+ + LD D EIR T FN +
Sbjct: 154 RISSIESLSPYQNNWVIKARVSFKGDLRTWHNAKGSGKLFNVNFLD-DSDEIRATAFNEL 212
Query: 174 VDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQF 233
++ YE ++ G+VY ISK ++ A+ F+ L + +E+ L+ + V+ C + ++PK +F
Sbjct: 213 AEKMYETLQEGKVYYISKARIQAAKPQFSRLSHPYELSLDRDTIVEECFSNNGNVPKLKF 272
Query: 234 SFRHISEIESAENNSIVDVIGIVISVNPSVPILRKN-GMETQRRILNLKDTSGRSVELTL 292
+F +++I+SAE N+++DV+G++ V P+ I K+ G RR +++ D S S+ + L
Sbjct: 273 NFTKLNQIQSAEPNTVIDVVGVLREVKPAFQITSKSTGKPFDRRDIDIVDDSNFSITVGL 332
Query: 293 WG----DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEA 348
W DF EG V++ K K+ DF G+S+ + + NPD EA
Sbjct: 333 WNATAIDFNLSEG------------TVIAFKGCKIQDFGGRSLTLTQTGSILPNPDAPEA 380
Query: 349 HELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFIT 408
++L+ W+D+ G N ++ + A + KT++Q+K E LG E+PD+ +V+A I
Sbjct: 381 YQLKGWYDNQGSNETFQTLKADNAGSANYIKNRKTIAQVKEENLGAQEQPDFFSVKATIN 440
Query: 409 FIKSDSFCYTAC--PLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQ 465
F K+++FCY AC + CN+K+ G+ W+C++C+ E YRY+L I D
Sbjct: 441 FFKTETFCYPACVNKQEASNNLCNRKIIDQGDGTWRCEKCDINYSEATYRYILNCSIMDA 500
Query: 466 TGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELY 525
T W T F + +I G A EL +LK ++ F +++ + ++ FRLK +++ Y
Sbjct: 501 TEQLWATLFDQEASKIFGVSANELLVLKE--SNEAEFKKVVEAVTMKEFSFRLKARQDSY 558
Query: 526 GDEQRVKITVIRADQVNYSSESRYLL 551
E R++ + +++++E +L+
Sbjct: 559 NGESRIRYQTMAVYDIDFAAECDFLV 584
>gi|17737841|ref|NP_524274.1| replication protein A 70 [Drosophila melanogaster]
gi|2498844|sp|Q24492.1|RFA1_DROME RecName: Full=Replication protein A 70 kDa DNA-binding subunit;
Short=RP-A p70; AltName: Full=Replication factor A
protein 1; Short=RF-A protein 1; AltName:
Full=Single-stranded DNA-binding protein; Short=DmRPA1
gi|1359608|emb|CAA94241.1| replication protein A [Drosophila melanogaster]
gi|7299004|gb|AAF54206.1| replication protein A 70 [Drosophila melanogaster]
gi|17861998|gb|AAL39476.1| LD04815p [Drosophila melanogaster]
gi|220943002|gb|ACL84044.1| RpA-70-PA [synthetic construct]
gi|220953088|gb|ACL89087.1| RpA-70-PA [synthetic construct]
Length = 603
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 161/440 (36%), Positives = 247/440 (56%), Gaps = 22/440 (5%)
Query: 117 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDR 176
PI++L+PYQ +W IKARVT+K +R ++NARG+GK+FS DL+D + GEIR T F D+
Sbjct: 168 PISSLSPYQNKWVIKARVTSKSGIRTWSNARGEGKLFSMDLMD-ESGEIRATAFKEQCDK 226
Query: 177 FYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTE-EDDSIPKQQFSF 235
FY++I+V VY ISK LKPA K ++ L N +E+ + V LC + +DD IP+ +++
Sbjct: 227 FYDLIQVDSVYYISKCQLKPANKQYSSLNNAYEMTFSGETVVQLCEDTDDDPIPEIKYNL 286
Query: 236 RHISEIESAENNSIVDVIGIVISVNPSVP-ILRKNGMETQRRILNLKDTSGRSVELTLWG 294
IS++ EN + VD IGI V + R E ++R + L D S ++ LTLWG
Sbjct: 287 VPISDVSGMENKAAVDTIGICKEVGELQSFVARTTNKEFKKRDITLVDMSNSAISLTLWG 346
Query: 295 DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLF-INPDFAEAHELRE 353
D +Q PV+ VK ++N+F+G ++ + INPD EAH+LR
Sbjct: 347 DDAVNFDGHVQ--------PVILVKGTRINEFNGGKSLSLGGGSIMKINPDIPEAHKLRG 398
Query: 354 WFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSD 413
WFD+GG ++ +S G E T+ + LG +KPD+ +A + +K +
Sbjct: 399 WFDNGGGDSVANMVSARTGGGSFSTE-WMTLKDARARNLGSGDKPDYFQCKAVVHIVKQE 457
Query: 414 SFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVT 472
+ Y ACP CNKKV GN +++C++CN YR L+ I D T WV+
Sbjct: 458 NAFYRACP----QSDCNKKVVDEGNDQFRCEKCNALFPNFKYRLLINMSIGDWTSNRWVS 513
Query: 473 AFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRV-FNQYLFRLKIKEELYGDEQRV 531
+F E GE++LG ++E + L++D E I S + F ++F+L+ K E+YGD R
Sbjct: 514 SFNEVGEQLLGHTSQE---VGEALENDPAKAEQIFSALNFTSHIFKLRCKNEVYGDMTRN 570
Query: 532 KITVIRADQVNYSSESRYLL 551
K+TV +N+ +++LL
Sbjct: 571 KLTVQSVAPINHKEYNKHLL 590
>gi|332018503|gb|EGI59093.1| Replication protein A 70 kDa DNA-binding subunit [Acromyrmex
echinatior]
Length = 608
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 169/446 (37%), Positives = 248/446 (55%), Gaps = 24/446 (5%)
Query: 117 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDR 176
PIAAL+PYQ +W IK RVT K ++ ++N+RG+GK+FS DL+D + GEIR T F ++
Sbjct: 171 PIAALSPYQNKWVIKVRVTNKSPIKTWSNSRGEGKLFSMDLID-ESGEIRCTAFRDQCEK 229
Query: 177 FYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFR 236
FY++IE G VY IS+ +LK A K F LKN++E+ + + + C E D IP QF F
Sbjct: 230 FYDMIETGNVYYISRCTLKAANKQFCTLKNDYEMTMTGDTEIIPCHENSDDIPTLQFDFC 289
Query: 237 HISEIESAENNSIVDVIGIVISVNPSVPIL-RKNGMETQRRILNLKDTSGRSVELTLWGD 295
IS+IES E N ++DV+G+V + N I+ R G E +R +N+ D SG V +TLWG
Sbjct: 290 PISQIESKEKNDLLDVLGVVTTFNDVQQIIQRTTGRELLKRDINIVDDSGTMVCVTLWG- 348
Query: 296 FCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFS-GKSIGTIPSTQLFINPDFAEAHELREW 354
K E D P++++K +V +F+ GK++ + S+ +PD EAH LR W
Sbjct: 349 -------KQAEDFDGSNNPIIAIKGARVGEFNGGKNLSLLHSSVFEKDPDLPEAHRLRGW 401
Query: 355 FDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLG-RSEKPDWVTVRAFITFIKSD 413
+ + G + S+S+ GG N T + LG + D TV A I I+ +
Sbjct: 402 YTAVGHSENIKSLSK-TGGGGDFNAPLYTFEEATEARLGEKMNLADSFTVVATINMIRVE 460
Query: 414 SFCYTACPLMIGDRQCNKK-VTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVT 472
+ Y ACP+ C KK + QS ++C++CN++ YR L I D TG W+T
Sbjct: 461 NAIYKACPV----ESCKKKLIDQSTGVFRCEKCNKDYPNSIYRLLASMNIVDATGSRWIT 516
Query: 473 AFQESGEEILGCPAKELYMLKYELQDDV--RFGEIIRSRVFNQYLFRLKIKEELYGDEQR 530
AF E E+ILG A+EL LK D +FGE F +++F L+ K E++ DE R
Sbjct: 517 AFSEDAEKILGMSAQELGELKENDNDAFLQKFGE----ASFKKFIFTLRAKSEVFQDEMR 572
Query: 531 VKITVIRADQVNYSSESRYLLDLISK 556
+K VNY + +L+D +SK
Sbjct: 573 IKHVCSSVAPVNYKTYLTHLIDRVSK 598
>gi|195572613|ref|XP_002104290.1| GD20882 [Drosophila simulans]
gi|194200217|gb|EDX13793.1| GD20882 [Drosophila simulans]
Length = 603
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 161/440 (36%), Positives = 247/440 (56%), Gaps = 22/440 (5%)
Query: 117 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDR 176
PI++L+PYQ +W IKARVT+K +R ++NARG+GK+FS DL+D + GEIR T F D+
Sbjct: 168 PISSLSPYQNKWVIKARVTSKSGIRTWSNARGEGKLFSMDLMD-ESGEIRATAFKEQCDK 226
Query: 177 FYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTE-EDDSIPKQQFSF 235
FY++I+V VY ISK LKPA K ++ L N +E+ + V LC + +DD IP+ +++
Sbjct: 227 FYDLIQVDSVYYISKCQLKPANKQYSSLNNAYEMTFSGETVVQLCEDTDDDPIPEIKYNL 286
Query: 236 RHISEIESAENNSIVDVIGIVISVNPSVP-ILRKNGMETQRRILNLKDTSGRSVELTLWG 294
IS++ EN + VD IGI V + R E ++R + L D S ++ LTLWG
Sbjct: 287 VPISDVSGMENKAAVDTIGICKEVGELQSFVARTTNKEFKKRDITLVDMSNSAISLTLWG 346
Query: 295 DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLF-INPDFAEAHELRE 353
D +Q PV+ VK ++N+F+G ++ + INPD EAH+LR
Sbjct: 347 DDAVNFDGHVQ--------PVILVKGTRINEFNGGKSLSLGGGSIMKINPDIPEAHKLRG 398
Query: 354 WFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSD 413
WFD+GG ++ +S G E T+ + LG +KPD+ +A + +K +
Sbjct: 399 WFDNGGGDSVANMVSARTGGGSFSTE-WMTLKDARARNLGSGDKPDYFQCKAVVHIVKQE 457
Query: 414 SFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVT 472
+ Y ACP CNKKV GN +++C++CN YR L+ I D T WV+
Sbjct: 458 NAFYRACP----QSDCNKKVIDEGNDQFRCEKCNALFPNFKYRLLINMSIGDWTSNRWVS 513
Query: 473 AFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRV-FNQYLFRLKIKEELYGDEQRV 531
+F E GE++LG ++E + L++D E I S + F ++F+L+ K E+YGD R
Sbjct: 514 SFNEVGEQLLGHTSQE---VGEALENDPAKAEQIFSALNFTSHIFKLRCKNEVYGDMTRN 570
Query: 532 KITVIRADQVNYSSESRYLL 551
K+TV +N+ +++LL
Sbjct: 571 KLTVQSVAPINHKEYNKHLL 590
>gi|50406267|ref|XP_456619.1| DEHA2A06776p [Debaryomyces hansenii CBS767]
gi|49652283|emb|CAG84575.1| DEHA2A06776p [Debaryomyces hansenii CBS767]
Length = 620
Score = 278 bits (712), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 152/451 (33%), Positives = 254/451 (56%), Gaps = 28/451 (6%)
Query: 114 RIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAV 173
+ I L+PYQ +W IKARV+ KGD+R+++NARG+GK+F+ + LD + EIR T FN +
Sbjct: 175 HVNAIEQLSPYQNQWVIKARVSYKGDIRKWSNARGEGKLFNVNFLD-ESDEIRATAFNDL 233
Query: 174 VDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQF 233
++FY+ +E G+VY ISK ++ A+ F+HL + +E+ L+ + V+ C + D +PK F
Sbjct: 234 AEKFYQELEEGKVYYISKARIQQAKPQFSHLSHPYELALDRDTNVEECFDTTD-VPKIHF 292
Query: 234 SFRHISEIESAENNSIVDVIGIVISVNPSVPILRKN-GMETQRRILNLKDTSGRSVELTL 292
+F +++IES E NSI+DVIG++ VNP I K+ G RR + + D S ++ + L
Sbjct: 293 NFTKLNQIESCEPNSIIDVIGVLKEVNPVFQITAKSTGKPFDRRNITIVDDSNFAITVGL 352
Query: 293 WG----DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEA 348
W DF EG V++ K K+ DF+G+S+ + + NPD AEA
Sbjct: 353 WNNTAVDFDTSEG------------SVIAFKGCKIQDFAGRSLTLTHAGSMMANPDTAEA 400
Query: 349 HELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFIT 408
++L+ WFD+ G N ++ E ++ K++ Q + E LG SEKPD+ ++A +
Sbjct: 401 YQLKGWFDNQGVNENFKTLKNENSSNQNLINNRKSILQAQEENLGMSEKPDFFNIKATVN 460
Query: 409 FIKSDSFCYTAC------PLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQ 461
F K+++FCY AC CN+KV Q W+C++C+ +E YRY+L
Sbjct: 461 FFKTENFCYPACNNSLQSSSQQPSTTCNRKVVEQPDGTWRCEKCDINFNEPHYRYILNCS 520
Query: 462 IQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVR--FGEIIRSRVFNQYLFRLK 519
+ D +G W+T F + ++ G A EL L+ + ++ F ++I ++ FRLK
Sbjct: 521 VMDSSGQLWMTLFDQEANKLFGKTAGELLTLREQQTNNENNVFQDLINDITMKEFNFRLK 580
Query: 520 IKEELYGDEQRVKITVIRADQVNYSSESRYL 550
+++ Y RV+ + + V++++E +L
Sbjct: 581 ARQDSYNGVVRVRYQAMTINDVDFNAECEHL 611
>gi|327283810|ref|XP_003226633.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Anolis carolinensis]
Length = 607
Score = 278 bits (712), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 173/472 (36%), Positives = 257/472 (54%), Gaps = 29/472 (6%)
Query: 96 PPPNFRNHGPILK-----NEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDG 150
PPP N GP + + A+++PIA+LNPYQ +W I ARVT KG +R ++N+RG+G
Sbjct: 144 PPPKMPNKGPASQFLSTPGGSQAKVVPIASLNPYQSKWTICARVTQKGQIRTWSNSRGEG 203
Query: 151 KVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEI 210
K+FS +L+D + GEIR T FN VD+FY +IE+ +VY SKG LK A K + +KN++EI
Sbjct: 204 KLFSIELVD-ESGEIRATAFNDQVDKFYPLIEMNKVYYFSKGQLKVANKQYTSVKNDYEI 262
Query: 211 FLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPI-LRKN 269
++V C E+ +P QF F I+E+E ++IVDVIG+ + + ++
Sbjct: 263 TFINDTSVIPC-EDAQHLPSVQFDFVSIAELERTSKDAIVDVIGVCKAYEEVTKLTMKTT 321
Query: 270 GMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGK 329
E +R L+L D+SG+ V + LWG + D PV+++K +V+DF G+
Sbjct: 322 NREVSKRDLHLVDSSGKMVSVALWGQEADN--------FDGSRQPVVAIKGARVSDFGGR 373
Query: 330 SIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIH------KT 383
S+ + S+ L +NPD EA LR WFDS GK+ T SIS + G + KT
Sbjct: 374 SLSVLSSSTLVVNPDRPEAFRLRGWFDSQGKHLETSSISNGWSGGSGGSGGGGSGPNWKT 433
Query: 384 VSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGN-RWQC 442
+ + K LG+ EK D+ + + +++ + Y ACP CNKK+ N ++C
Sbjct: 434 LRESKTGNLGQGEKADYYSCIGTVIYLRKEKCLYKACP----SPDCNKKLVDEQNGLYRC 489
Query: 443 DRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRF 502
++CN E +R +LQ I D WVT FQE+ E ILG A L LK D+ F
Sbjct: 490 EKCNLETPNFKHRMILQVNIADFQDQQWVTCFQEAAETILGQNATYLGELKE--TDEHAF 547
Query: 503 GEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLI 554
II F + FR++ K E++ DE R+K T + VN+ L+ I
Sbjct: 548 NSIIEKSFFATFEFRVRAKMEMFNDELRLKTTALEVKPVNHKEYGHRLVQSI 599
>gi|170087382|ref|XP_001874914.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650114|gb|EDR14355.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 602
Score = 277 bits (709), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 155/453 (34%), Positives = 245/453 (54%), Gaps = 26/453 (5%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
+ PI L+PYQ W IKARVT K +++ ++N RG+GK+F+ L+D + GEIR T FN VV
Sbjct: 169 VYPIEGLSPYQNSWTIKARVTQKSEIKTWSNQRGEGKLFNVTLMD-ETGEIRATGFNLVV 227
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
D Y +E G+VY ISK + A+K F++L N++E+ LE + V C E ++P ++S
Sbjct: 228 DELYPKLEEGKVYYISKARVNLAKKKFSNLANDYELSLERNTEVVEC-HETANVPMIKYS 286
Query: 235 FRHISEIESAENNSIVDVIGIVISVNPSVPILRK-NGMETQRRILNLKDTSGRSVELTLW 293
F +S ++ E +S+ DVIG+V V+ I K + +R L L D SG SV LTLW
Sbjct: 287 FVPLSGLQDLEKDSVCDVIGVVKEVSALSEITSKATNRQIPKRELTLVDKSGFSVRLTLW 346
Query: 294 GDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELRE 353
G K E + PV++ K KV DF G+S+ S+ + +NP E LR
Sbjct: 347 G--------KQAEQYNAEDSPVIAFKGVKVGDFGGRSLSMFSSSTMHVNPHLEECFALRG 398
Query: 354 WFDSGGKNAATVSISREIAAGGAKNEIH------KTVSQIKNEGLGRSEKPDWVTVRAFI 407
W+DS G A S +AGG + + +++ +K G G +KP++ + RA I
Sbjct: 399 WYDSSG---AEQSFHAHSSAGGGASTMSFNRAEIRSLDDVKQAGFGLPDKPEYFSARATI 455
Query: 408 TFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTG 467
IK+D+ Y ACP + CNKKV Q G+ W+C++C + + ++RY++ + D +G
Sbjct: 456 MHIKADNISYPACPT----QNCNKKVIQDGDSWRCEKCEKSFEAPEHRYIMSLAVADASG 511
Query: 468 LTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGD 527
W F E G I G A EL ++ + ++ ++ N Y F + K++ Y +
Sbjct: 512 QAWFQGFNEVGTTIFGKTANELIAIRD--SNSAQYNVLLHKANCNTYNFSCRAKQDTYNE 569
Query: 528 EQRVKITVIRADQVNYSSESRYLLDLISKSFRK 560
R++ + R ++Y E+ L DL+ S+ +
Sbjct: 570 NTRIRYGISRIYPLDYKEEAMALRDLLYSSWAR 602
>gi|195499032|ref|XP_002096775.1| GE24866 [Drosophila yakuba]
gi|194182876|gb|EDW96487.1| GE24866 [Drosophila yakuba]
Length = 603
Score = 277 bits (709), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 160/440 (36%), Positives = 246/440 (55%), Gaps = 22/440 (5%)
Query: 117 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDR 176
PI++L+PYQ +W IKARVT+K +R ++NARG+GK+FS DL+D + GEIR T F D+
Sbjct: 168 PISSLSPYQNKWVIKARVTSKSGIRTWSNARGEGKLFSMDLMD-ESGEIRATAFKEQCDK 226
Query: 177 FYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTE-EDDSIPKQQFSF 235
FY++I+V VY ISK LKPA K ++ L N +E+ + V LC + +DD IP+ +++
Sbjct: 227 FYDLIQVDSVYYISKCQLKPANKQYSSLNNAYEMTFSGETVVQLCEDTDDDPIPEIKYNL 286
Query: 236 RHISEIESAENNSIVDVIGIVISVNPSVP-ILRKNGMETQRRILNLKDTSGRSVELTLWG 294
IS++ EN + VD IGI V + R E ++R + L D S ++ LTLWG
Sbjct: 287 IPISDVSGMENKAAVDTIGICKEVGELQSFVARTTNKEFKKREITLVDMSNSAISLTLWG 346
Query: 295 DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLF-INPDFAEAHELRE 353
D +Q PV+ VK ++N+F+G ++ + INPD EAH+LR
Sbjct: 347 DEAVNFDGHVQ--------PVILVKGSRINEFNGGKSLSLGGGSIMKINPDIPEAHKLRG 398
Query: 354 WFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSD 413
WFD+GG + +S G E T+ + LG +KPD+ +A + +K +
Sbjct: 399 WFDNGGGDNVANMVSARTGGGNFSTE-WMTLKDARTRNLGSGDKPDYFQCKAVVHIVKQE 457
Query: 414 SFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVT 472
+ Y ACP CNKKV GN +++C++CN YR L+ I D T WV+
Sbjct: 458 NAFYRACP----QSDCNKKVVDEGNDQFRCEKCNALFPNFKYRLLINMSIGDWTSNRWVS 513
Query: 473 AFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRV-FNQYLFRLKIKEELYGDEQRV 531
+F E GE++LG ++E + L++D E I S + F ++F+L+ K E++GD R
Sbjct: 514 SFNEVGEQLLGHSSQE---VGEALENDPAKAEQIFSALNFTSHIFKLRCKNEVFGDMTRN 570
Query: 532 KITVIRADQVNYSSESRYLL 551
K+TV +N+ +++LL
Sbjct: 571 KLTVQSVAPINHKEYNKHLL 590
>gi|367023819|ref|XP_003661194.1| hypothetical protein MYCTH_2300304 [Myceliophthora thermophila ATCC
42464]
gi|347008462|gb|AEO55949.1| hypothetical protein MYCTH_2300304 [Myceliophthora thermophila ATCC
42464]
Length = 614
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 160/452 (35%), Positives = 257/452 (56%), Gaps = 22/452 (4%)
Query: 110 EAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTC 169
A + I PI A++PY +W IK RVT+K D+R ++ +GK+FS +LLD + GEIR T
Sbjct: 177 HAASTIYPIEAISPYANKWTIKVRVTSKSDIRTWHKTHSEGKLFSVNLLD-ESGEIRATA 235
Query: 170 FNAVVDRFYEIIEVGRVYLISK-GSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSI 228
FN VD+FY++++ G VY IS ++ A+K F++L N++E+ LE+ + ++ ++ S+
Sbjct: 236 FNQEVDQFYDLLQEGSVYYISTPCKVQLAKKQFSNLANDYELMLESGTVIER-ADDQSSV 294
Query: 229 PKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGME-TQRRILNLKDTSGRS 287
P+ +F+F I E++ E ++ VDVIG++ VN I K + +R L L D +G S
Sbjct: 295 PQVRFNFCTIQELQGVEKDATVDVIGVLKEVNELEQITSKTTQKPYDKRELTLVDDTGYS 354
Query: 288 VELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAE 347
V +T+WG K D V++ K +V+DF G+S+ + S + I+PD E
Sbjct: 355 VRVTIWG--------KTAREFDASPESVIACKGTRVSDFGGRSLSLLSSGTMAIDPDIPE 406
Query: 348 AHELREWFDSGGKNA--ATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRA 405
AH+L+ W+++ G+N AT S + A + + K ++QIKNE LG +K D+ TV+
Sbjct: 407 AHKLKGWYEAQGRNNTFATHSNLSSVGAATGRKDDAKWIAQIKNENLG-VDKTDYFTVKG 465
Query: 406 FITFIKSDSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQD 464
I ++ ++F Y ACP CNKKVT G+ W+C++CN D YRY++ I D
Sbjct: 466 TIVHMRQENFAYPACP----SESCNKKVTDMGDGTWRCEKCNITHDRPQYRYIMSVCISD 521
Query: 465 QTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEEL 524
TG W++ F E I+G A E M++ QD F + + FR + K E
Sbjct: 522 HTGNVWISCFDEQARLIMGKTADE--MMELREQDQAAFEAAFDAANCRKMSFRCRAKMET 579
Query: 525 YGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
+ ++ RV+I+V A ++Y SE+ L +LI +
Sbjct: 580 FAEQPRVRISVWNAAPLDYKSEAHRLAELIKE 611
>gi|322799305|gb|EFZ20693.1| hypothetical protein SINV_03263 [Solenopsis invicta]
Length = 588
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 167/458 (36%), Positives = 258/458 (56%), Gaps = 30/458 (6%)
Query: 109 NEAPARI--IPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIR 166
N+A + I PIAAL+PYQ RW IKARV K ++ ++N+RG+GK+FS DL+D + GEIR
Sbjct: 142 NQASSDIHTTPIAALSPYQNRWVIKARVINKSPIKTWSNSRGEGKLFSMDLID-ESGEIR 200
Query: 167 VTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDD 226
T F VVD+FY++I G +Y IS+ LK A K FN +KN++E+ + + + + C + +
Sbjct: 201 CTAFRDVVDKFYDLIVTGNIYYISRCVLKAANKQFNTMKNDYEMTMNSDTEIVPCHDSSN 260
Query: 227 SIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPIL-RKNGMETQRRILNLKDTSG 285
IP QF+F IS++ES E N ++DV+G+V +V I R G E +R +++ D SG
Sbjct: 261 DIPTLQFNFSPISQVESKEKNDLLDVLGVVTTVGDVQHITARTTGRELIKRDISIVDDSG 320
Query: 286 RSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFS-GKSIGTIPSTQLFINPD 344
V +TLWG + G ++++K +V +F+ GK++ + S+ + +PD
Sbjct: 321 TMVTVTLWGTQAEEFGASNN--------TIIAIKGARVGEFNGGKNLSLVMSSIIEKDPD 372
Query: 345 FAEAHELREWFDSGGKNAATVSISREIAAGGAK--NEIHKTVSQIKNEGLG-RSEKPDWV 401
EAH LR W+ + G + S+SR GG+ N T + + LG + PD
Sbjct: 373 IPEAHRLRGWYTAVGHSETAKSLSR---VGGSTDFNGPLYTFQEATDARLGEKMNLPDSF 429
Query: 402 TVRAFITFIKSDSFCYTACPLMIGDRQCNKK-VTQSGNRWQCDRCNQEIDECDYRYLLQA 460
T A I I++++ Y ACP+ C KK + Q ++C++CN+E YR L
Sbjct: 430 TAVATIKQIRTENSLYRACPV----ESCKKKLIDQDNGIFRCEKCNKEYPNFTYRLLASM 485
Query: 461 QIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDV--RFGEIIRSRVFNQYLFRL 518
++ D TG W+TAF E E+ILG A+EL LK +D +FGE F ++F L
Sbjct: 486 ELADATGSRWITAFNEEAEKILGMSAQELGELKENDKDAYLQKFGEA----TFKTFMFNL 541
Query: 519 KIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
K + E++ DE R+K A +NY + +L+D +SK
Sbjct: 542 KARSEVFQDEMRIKHVCTSAGPINYKTYLPHLIDKVSK 579
>gi|68472689|ref|XP_719663.1| hypothetical protein CaO19.9640 [Candida albicans SC5314]
gi|68472948|ref|XP_719539.1| hypothetical protein CaO19.2093 [Candida albicans SC5314]
gi|46441361|gb|EAL00659.1| hypothetical protein CaO19.2093 [Candida albicans SC5314]
gi|46441490|gb|EAL00787.1| hypothetical protein CaO19.9640 [Candida albicans SC5314]
gi|238881852|gb|EEQ45490.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 624
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 161/486 (33%), Positives = 278/486 (57%), Gaps = 38/486 (7%)
Query: 88 PTVQPPYQPPPN-FRNH--GPILKNEAPA----RIIPIAALNPYQGRWAIKARVTAKGDL 140
P V PP N F++ G + PA ++ PI ++PYQ W IKARV+ KGDL
Sbjct: 147 PGVTPPLAQSTNSFKSEVGGGVAAQSKPAGTHRKVSPIETISPYQNNWTIKARVSYKGDL 206
Query: 141 RRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKN 200
R ++N++G+GKVF F+LLD + EI+ + FN +R ++++E G+VY ISK + A+K
Sbjct: 207 RTWSNSKGEGKVFGFNLLD-ESDEIKASAFNETAERAHKLLEEGKVYYISKARVAAARKK 265
Query: 201 FNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVN 260
FN L + +E+ + + + C +E D +PK F+F + ++++ E N+I+DV+G + +V
Sbjct: 266 FNTLSHPYELTFDKDTEITECFDESD-VPKLNFNFVKLDQVQNLEANAIIDVLGALKTVF 324
Query: 261 PSVPILRKN-GMETQRRILNLKDTSGRSVELTLWG----DFCNKEGQKLQEMVDVGFFPV 315
P I K+ G RR + + D +G +EL LW DF +EG V
Sbjct: 325 PPFQITAKSTGKVFDRRNILVVDETGFGIELGLWNNTATDFNIEEGT------------V 372
Query: 316 LSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIA-AG 374
++VK KV+D+ G+++ + + NP E+ +L+ W+D+ G + + S+ + A +G
Sbjct: 373 VAVKGCKVSDYDGRTLSLTQAGSIIPNPGTPESFKLKGWYDNIGIHESFKSLKIDNAGSG 432
Query: 375 GAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGD-------R 427
G K +++Q E G +EKPD+ +++A +TF K ++F Y ACP ++ + +
Sbjct: 433 GDKISQRISINQALEEHSGSTEKPDYFSIKASVTFCKPENFAYPACPNLVQNADATRPAQ 492
Query: 428 QCNKKVTQSGN--RWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCP 485
CNKK+ N W+C+RC + +E +RY+L + D TG WVT F + E++LG
Sbjct: 493 VCNKKLVFQDNDGTWRCERCAKTYEEPTWRYVLSCSVTDSTGHMWVTLFNDQAEKLLGID 552
Query: 486 AKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSS 545
A EL + K E + +V +I+ + +F ++ R+K K+E Y DE + + + ++++Y+S
Sbjct: 553 ATEL-VKKKEQKSEVA-NQIMNNTLFKEFSLRVKAKQETYNDELKTRYSAAGINELDYAS 610
Query: 546 ESRYLL 551
ES++L+
Sbjct: 611 ESQFLI 616
>gi|367036607|ref|XP_003648684.1| hypothetical protein THITE_2106430 [Thielavia terrestris NRRL 8126]
gi|346995945|gb|AEO62348.1| hypothetical protein THITE_2106430 [Thielavia terrestris NRRL 8126]
Length = 610
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 158/452 (34%), Positives = 253/452 (55%), Gaps = 21/452 (4%)
Query: 110 EAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTC 169
A + I PI AL+PY +W IK RVT+K D+R ++ A GDGK+FS +LLD + GEIR T
Sbjct: 172 HAASTIYPIEALSPYSNKWTIKVRVTSKSDIRTWHKASGDGKLFSVNLLD-ETGEIRATG 230
Query: 170 FNAVVDRFYEIIEVGRVYLISK-GSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSI 228
FN VD+FY++++ G VY IS ++ A+K F++L N++E+ E + ++ E+ S+
Sbjct: 231 FNEQVDQFYDLLQEGSVYYISTPCKVQLAKKQFSNLANDYEMMFERDTVIEKA-EDQSSV 289
Query: 229 PKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGME-TQRRILNLKDTSGRS 287
P+ +F+F +I E+ E ++ VDVIG++ V I+ K + +R L L D +G S
Sbjct: 290 PQLRFNFCNIEELRDVEKDATVDVIGVLKEVGEVTEIISKTTQKPYDKRELTLVDDTGFS 349
Query: 288 VELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAE 347
V +T+WG K D ++++K +V+DF G+S+ + S + I+PD E
Sbjct: 350 VRVTIWG--------KTATEFDANPESIIALKGTRVSDFGGRSLSLLSSGTMAIDPDIPE 401
Query: 348 AHELREWFDSGGKNAATVSISR--EIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRA 405
AH+L+ W+DS G+N A + S + A + + KT+ Q+K+E LG + + TV+A
Sbjct: 402 AHKLKGWYDSTGRNNAFATHSNLASVGAAAGRKDDTKTIGQVKSEKLGFDDAV-YFTVKA 460
Query: 406 FITFIKSDSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQD 464
I I+ ++F Y AC CNKKVT G+ W+C++CN D YRY++ + D
Sbjct: 461 TIVHIRQENFAYPACR----SENCNKKVTDMGDGTWRCEKCNLSHDRPQYRYIMSINVSD 516
Query: 465 QTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEEL 524
TG W+ F +S I+G A EL ++ D + + FR + K +
Sbjct: 517 HTGQMWLNCFDDSARIIMGKTADELVEMQ-ATGDKEGLDAAFEAANCRKLTFRCRAKMDT 575
Query: 525 YGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
YGD+ RV+ V+ A ++Y +E L +LI +
Sbjct: 576 YGDQPRVRYQVMSAAPLDYKTEGHKLAELIQQ 607
>gi|149248590|ref|XP_001528682.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146448636|gb|EDK43024.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 658
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 167/492 (33%), Positives = 269/492 (54%), Gaps = 45/492 (9%)
Query: 90 VQPPYQPPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGD 149
Q P P P R G ++ RI PI L+PYQ W I+ARV+ KG+LR ++NA+G+
Sbjct: 180 AQNPQYPKP--RGVGLGAGDKNGPRISPIETLSPYQNNWTIRARVSYKGELRTWSNAKGE 237
Query: 150 GKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWE 209
GKVFS + LD + EI+ + FN ++ Y I+E G+VY ISK + A+K FN+L + +E
Sbjct: 238 GKVFSVNFLD-ESDEIKASAFNETAEKAYNILEEGKVYYISKAKVAAARKKFNNLTHPYE 296
Query: 210 IFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKN 269
+ LE S + C +E + +PK F+F + +I++ + N+IVDVIG + VNP I K+
Sbjct: 297 LQLEKDSEITECFDESN-VPKLNFNFVKLDQIQNLDANAIVDVIGALKVVNPPFQITAKS 355
Query: 270 -GMETQRRILNLKDTSGRSVELTLW----GDFCNKEGQKLQEMVDVGFFPVLSVKSGKVN 324
G RR + + D SG +V++ LW DF +EG V++ K KV+
Sbjct: 356 TGKAFDRRDITIVDESGFAVDIGLWNQTAADFAVEEGS------------VIAFKGCKVS 403
Query: 325 DFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEI---- 380
DF+G+++ S L NP E++ L+ W+D+ G S+ E AG +
Sbjct: 404 DFNGRTLSLTQSGSLIANPGIPESYHLKGWYDNIGVKENYKSLKTESGAGSNNLSVMERF 463
Query: 381 --HKTVSQIKNEGLGR---SEKPDWVTVRAFITFIKSDSFCYTACPLMI----------- 424
K +SQ+++E +G EK ++ + +A +++ K ++F Y ACP ++
Sbjct: 464 AQRKMISQVEDENIGGQNGGEKLEYFSTKASLSYAKPENFAYPACPNILSQSGDASLSGA 523
Query: 425 GDRQ--CNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEIL 482
G RQ CNKK+ Q ++W+C+RCN E D +RY+L I D +G WVT F E +++L
Sbjct: 524 GARQNPCNKKLVQYDDKWRCERCNMEFDRPTWRYILNCGIMDASGQIWVTLFDEQAKKLL 583
Query: 483 GCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVN 542
G A EL L E Q+ E+I F ++ FR++ K++ + D+ +++ + ++
Sbjct: 584 GMEANELVELSQENQNAA--AEVIHRNYFREFNFRIRAKQDTFNDQLKIRYQCMGLTDID 641
Query: 543 YSSESRYLLDLI 554
Y++E YL I
Sbjct: 642 YTAECDYLCKEI 653
>gi|213408425|ref|XP_002174983.1| replication factor-A protein [Schizosaccharomyces japonicus yFS275]
gi|212003030|gb|EEB08690.1| replication factor-A protein [Schizosaccharomyces japonicus yFS275]
Length = 608
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 146/450 (32%), Positives = 250/450 (55%), Gaps = 27/450 (6%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
I PI L+PYQ +W I+ARVT K +++ ++N RG+GK+FS +LLD + GEIR T FN V
Sbjct: 179 IYPIEGLSPYQNKWTIRARVTNKSEIKHWHNQRGEGKLFSVNLLD-ESGEIRATGFNEQV 237
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
D FY+I++ G+VY ISK + A+K F++++NE+E+ E + + +E+ +++P +F+
Sbjct: 238 DAFYDILQEGQVYFISKCRVNIAKKQFSNVQNEYELMFERDTEIK-KSEDQNAVPMARFN 296
Query: 235 FRHISEIESAENNSIVDVIGIVISVNPSVPIL-RKNGMETQRRILNLKDTSGRSVELTLW 293
F + E+ ++I+DVIG++ ++ P I R +R + + D SG + +T+W
Sbjct: 297 FVTLEEVGKVAKDAIIDVIGVLQNIGPVQQITSRATSRGFDKRDITIVDQSGFEMRMTVW 356
Query: 294 G----DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAH 349
G DF E +++ K KVNDF G+S+ + S+ + +PD EAH
Sbjct: 357 GKQAIDFSVPEE------------SIIAFKGVKVNDFQGRSLSMLNSSTMTTDPDIPEAH 404
Query: 350 ELREWFDSGGKNAATVSISREIAAGGAKNEI--HKTVSQIKNEGLGRSEKPDWVTVRAFI 407
L+ W+D G+ + S G N KTV++++ + LG SE PD+ +++A +
Sbjct: 405 TLKGWYDGQGRAQDFMKHSSAATVGSGTNRTAERKTVAEVQAQHLGMSETPDYFSLKATV 464
Query: 408 TFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTG 467
+I+ + Y ACP CNKKV G W C++CN++ + YRY++ D TG
Sbjct: 465 VYIRKKNISYPACPT----PDCNKKVFDQGGSWHCEKCNKDYEAPHYRYIMTIAAGDHTG 520
Query: 468 LTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGD 527
W+ F + G ++G A EL ++ D+ F ++ + Y+F + K++ +
Sbjct: 521 QLWLNVFDDVGRILMGKTADELNAMQE--NDENEFTSVMSDASYVPYVFECRAKQDNFKG 578
Query: 528 EQRVKITVIRADQVNYSSESRYLLDLISKS 557
E RV+ T + +++ ES+ L+DLI +
Sbjct: 579 EVRVRYTAMSVRNIDWKQESKRLVDLIKSA 608
>gi|307192559|gb|EFN75747.1| Replication protein A 70 kDa DNA-binding subunit [Harpegnathos
saltator]
Length = 597
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 167/449 (37%), Positives = 252/449 (56%), Gaps = 28/449 (6%)
Query: 117 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDR 176
PIAAL+PYQ +W IK RV K +R ++N+RGDGK+F+ +L+D + GEIR T FN D+
Sbjct: 159 PIAALSPYQNKWVIKVRVLTKSQIRTWSNSRGDGKLFNMELVD-ESGEIRCTAFNNACDK 217
Query: 177 FYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFR 236
FY++IE G VY IS+ LKPA K FN +KN++E+ + + V C + + IP QF+F
Sbjct: 218 FYDMIEAGNVYYISRCQLKPANKQFNTMKNDFEMSMTNDTEVVPCHDNSEDIPTLQFNFS 277
Query: 237 HISEIESAENNSIVDVIGIVISVNPSVPIL-RKNGMETQRRILNLKDTSGRSVELTLWGD 295
IS++E+ + + ++DV+G+V + I+ +K G E +R +N+ D S +V +TLWG
Sbjct: 278 PISQLENMKKDDMIDVLGVVTTFGELQNIVSQKTGKEHVKRDINIVDDSSVTVCVTLWG- 336
Query: 296 FCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGK---SIGTIPSTQLFINPDFAEAHELR 352
K E D P++++KS +V +F+G SIG + + +PD EAH LR
Sbjct: 337 -------KQAEDFDASNNPIVAIKSARVGEFNGGKNLSIGGMAIIEK--DPDLPEAHRLR 387
Query: 353 EWFDSGGKNAATVSISREIAAGGAK-NEIHKTVSQIKNEGLG-RSEKPDWVTVRAFITFI 410
W+ +GG S+S+ AGG N T + + LG + + D +V A I I
Sbjct: 388 GWYSAGGHLENVKSLSKAGGAGGGDMNAPLYTFQEATDAKLGEKMDAADVFSVTATINII 447
Query: 411 KSDSFCYTACPLMIGDRQCNKK-VTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLT 469
+ ++ Y ACPL C KK V QS ++C++CN++ YR L I D TG
Sbjct: 448 RVENSIYKACPL----ESCKKKLVDQSTGVFRCEKCNKDYPNFLYRLLASMNIADATGSR 503
Query: 470 WVTAFQESGEEILGCPAKELYMLKYELQDDV--RFGEIIRSRVFNQYLFRLKIKEELYGD 527
W+TAF E E+ILG A+EL LK D +FG+ F ++ F +++K E++ D
Sbjct: 504 WITAFNEEAEKILGMSAQELGELKENDNDAYMQKFGDA----SFKRFTFGVRVKSEVFQD 559
Query: 528 EQRVKITVIRADQVNYSSESRYLLDLISK 556
E R++ T +NY +LLD SK
Sbjct: 560 EMRMRHTCTSVSPLNYRIYLAHLLDKASK 588
>gi|336269529|ref|XP_003349525.1| RFA1 protein [Sordaria macrospora k-hell]
gi|380093400|emb|CCC09058.1| putative RFA1 protein [Sordaria macrospora k-hell]
Length = 610
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 155/466 (33%), Positives = 258/466 (55%), Gaps = 31/466 (6%)
Query: 105 PILKNEAPAR----------IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFS 154
P +AP+R I PI L+P+ +W IKARVT+K D++ ++ G+GK+FS
Sbjct: 154 PQFPRQAPSRNTSGGQGSNTIYPIEGLSPFSHKWTIKARVTSKSDIKTWHKPSGEGKLFS 213
Query: 155 FDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGS-LKPAQKNFNHLKNEWEIFLE 213
+ LD + GEIR T FN VD+FY++++ G+VY IS ++ A+K F++L N++E+ E
Sbjct: 214 VNFLD-ESGEIRATGFNEQVDQFYDLLQEGQVYYISTPCRVQLAKKQFSNLPNDYELTFE 272
Query: 214 ATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMET 273
+ ++ E+ S+P+ +F+F +I E++ E ++ +DVIG++ V I+ K +
Sbjct: 273 RDTQIEK-AEDQTSVPQVRFNFVNIQELQDVEKDATIDVIGVLKEVQEVTQIVSKTTQKP 331
Query: 274 -QRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIG 332
+R L L D +G SV T+WG K D ++++K KV+DF G+S+
Sbjct: 332 YDKRELTLVDNTGYSVRCTIWG--------KTATNFDAQPESIVAMKGTKVSDFGGRSLS 383
Query: 333 TIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGA--KNEIHKTVSQIKNE 390
+ S + I+PD EAH L+ W+DS G+N + + GGA + + KT+SQ+K E
Sbjct: 384 LLSSGTMAIDPDIPEAHHLKGWYDSSGRNNTFATHNNMATLGGATGRKDDTKTISQVKEE 443
Query: 391 GLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEI 449
LG E PD+ +++A + +IK D+F Y C CN+KVT G+ W+C++C
Sbjct: 444 NLGTGEMPDYFSLKATVVYIKQDNFAYPGCR----SEGCNRKVTDMGDGTWRCEKCQVNH 499
Query: 450 DECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSR 509
D YRY++ + D TG W++ F ++ I+G A EL ++ D+ R
Sbjct: 500 DRPQYRYIMSVNVNDHTGQLWLSCFDDTARIIMGKSADELIEMREN--DETRLAAEFEQA 557
Query: 510 VFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLIS 555
+ FR + K + +G++QRV+ V+ A ++Y E L +LI+
Sbjct: 558 NCRKLNFRCRAKMDTFGEQQRVRYQVMSAAPLDYKMEGNKLNELIN 603
>gi|150863697|ref|XP_001382257.2| DNA replication factor A [Scheffersomyces stipitis CBS 6054]
gi|149384953|gb|ABN64228.2| DNA replication factor A [Scheffersomyces stipitis CBS 6054]
Length = 616
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 157/456 (34%), Positives = 267/456 (58%), Gaps = 30/456 (6%)
Query: 108 KNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRV 167
+N +I PI L+PYQ W IKARV+ KGDLR + NA+G+GK+ S + LD + EI+
Sbjct: 169 RNGFQGKITPIETLSPYQNNWTIKARVSYKGDLRTWTNAKGEGKLISVNFLD-ESDEIKA 227
Query: 168 TCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDS 227
+ F V ++++E G+VY ISK ++ + K FN L + +E+ ++ + ++ C + D+
Sbjct: 228 SAFQDVAISAHKLLEEGKVYYISKAKVQASNKKFNTLSHPYELVMDRDTKIEECFDVDN- 286
Query: 228 IPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKN-GMETQRRILNLKDTSGR 286
+PK F+F +++I + + N+I+DV+G + VN I K+ G E RR + + D +G
Sbjct: 287 VPKMHFNFIKLNQIPNLDPNAIIDVLGALKIVNEPYKITAKSTGKEFDRRNVTIVDETGF 346
Query: 287 SVELTLWG----DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFIN 342
++++ LW +F EG +++ KS +V DF+G+S+ + + N
Sbjct: 347 AIDVGLWNNTATEFSIPEGS------------IIAFKSCRVQDFNGRSLTLTQTGSMLPN 394
Query: 343 PDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLG-RSEK-PDW 400
P+ E++ L+ W+D+ G NA ++ E + G K KT++Q ++E LG RSEK PD+
Sbjct: 395 PNTPESYSLKGWYDNQGVNANFNNLKVESSGGETKIGDRKTIAQAQDESLGLRSEKEPDY 454
Query: 401 VTVRAFITFIKSD-SFCYTACP--LMIGDRQ--CNKK-VTQSGNRWQCDRCNQEIDECDY 454
TV+A I+FIK+D +FCY AC + +R+ CNKK V Q N W+C++C++ + Y
Sbjct: 455 FTVKASISFIKTDPNFCYPACTNEVQYNNRKSACNKKLVEQHDNSWRCEKCDKNYAQPTY 514
Query: 455 RYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQY 514
RY+L I D+T WVT F+ +ILG A EL L+ D F + I+ + F ++
Sbjct: 515 RYILTCSIMDETNQIWVTLFEREALKILGKDANELIALQ---DDSAAFKDYIQEKCFQEH 571
Query: 515 LFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYL 550
+FR++ K++ Y D+ RV+ + ++Y++E+ +L
Sbjct: 572 VFRIRAKQDTYNDQVRVRYQCVALYDIDYNAEAIHL 607
>gi|430814436|emb|CCJ28324.1| unnamed protein product [Pneumocystis jirovecii]
Length = 513
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 154/467 (32%), Positives = 269/467 (57%), Gaps = 32/467 (6%)
Query: 103 HGPILKNE-----------APARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGK 151
H PIL+N+ + A I PI +L+PYQ RW IKARVT+K +++ ++N +G+GK
Sbjct: 63 HMPILQNQKEEINNRISSVSSATIYPIESLSPYQNRWTIKARVTSKTEIKHWHNQKGEGK 122
Query: 152 VFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIF 211
+FS +D + GEIR T FN VD Y++++ G+VY ISK + A+K F++++NE+E+
Sbjct: 123 LFSCVFMD-ESGEIRATAFNDQVDMLYDVLQEGQVYFISKCRVNIAKKQFSNVQNEYELT 181
Query: 212 LEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGM 271
E + V+ C ++ ++P+ +F+F + ++++ E +SI+DVIGI+ V+ SV I +
Sbjct: 182 FERDTEVEKCPDQ-STVPQAKFNFVFLKDLDNVEKDSIIDVIGILKEVHESVEITSRTTQ 240
Query: 272 E--TQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGK 329
+ +R + + D+S SV LTLWG K ++ V++ K KV++F+G+
Sbjct: 241 KFVYSKRDIFIVDSSNYSVRLTLWG--------KHALDFNIPQETVVAFKGLKVSEFNGR 292
Query: 330 SIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKN 389
S+ + S + NP EA+ L++W+D GK + + + A + E KT++QIK+
Sbjct: 293 SLSLLNSGMVIANPQIEEAYSLKKWYDKQGKEESFATHQSIVTA--IRKEERKTIAQIKD 350
Query: 390 EGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQE 448
E LG +E+PD+ +++A I F K ++ Y ACP CNKKV + W+C++C++
Sbjct: 351 EQLGMAEQPDYFSIKATIVFFKQENAFYPACPTA----GCNKKVIEDNEGGWRCEKCDKS 406
Query: 449 IDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRS 508
YRY+L + D TG W++ F + G I+G A ++ ++ E ++ I
Sbjct: 407 FPAPQYRYILTISVNDHTGQIWLSCFDDVGRLIIGKSADDIVQMREE--NEQAALNIFHE 464
Query: 509 RVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLIS 555
Y+FR++ K++ Y RV+ V+ A +N++ E + L ++I+
Sbjct: 465 ANCKSYVFRVRAKQDSYNGAVRVRYQVMSASFINWAHECKLLTEIIN 511
>gi|346324124|gb|EGX93721.1| replication factor-A protein 1 [Cordyceps militaris CM01]
Length = 598
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 157/448 (35%), Positives = 259/448 (57%), Gaps = 24/448 (5%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
I PI L+P+ +W IKARVT+K +++ ++ A G+GK+FS +LLD + GEI+ T FN
Sbjct: 164 IYPIEGLSPFSHKWTIKARVTSKSEIKTWHKATGEGKLFSVNLLD-ESGEIKCTGFNDQC 222
Query: 175 DRFYEIIEVGRVYLISK-GSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQF 233
D FYE+++ G VY IS + A+K F++L N++E+ E + ++ E+ ++P+ +F
Sbjct: 223 DAFYELLQEGSVYYISTPCRVNLAKKQFSNLPNDYELAFERDTVIEK-AEDQTNVPQVRF 281
Query: 234 SFRHISEIESAENNSIVDVIGIVISVNPSVPIL-RKNGMETQRRILNLKDTSGRSVELTL 292
+F I E++S E ++ VD+IG++ I+ +K G Q+R L + D +G SV +T+
Sbjct: 282 NFSTIQELQSVEKDNTVDIIGVLKEAGEISEIVSKKTGAPYQKRELTMVDDTGYSVRVTI 341
Query: 293 WGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELR 352
WG K D V++ K KV+DF GKS+ + S + ++PD +AH L+
Sbjct: 342 WG--------KTASSFDAQPESVVAFKGTKVSDFGGKSLSLLSSGTISVDPDIPDAHRLK 393
Query: 353 EWFDSGGKN---AATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITF 409
W+DS G+N +++ AA G +EI KT++Q+K E LG ++ + T++A I F
Sbjct: 394 GWYDSAGRNDNFTTHQNLASVGAAAGRTDEI-KTIAQVKEENLGVDDQA-YYTIKATIVF 451
Query: 410 IKSDSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQTGL 468
+K D+FCY AC + CNKKV G+ W+C++CN D+ +YRY++ + D T
Sbjct: 452 VKQDNFCYPACL----SQGCNKKVQDMGDGTWRCEKCNLSHDKPEYRYVMNFNVADHTSH 507
Query: 469 TWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDE 528
W++ F ESG I+G A EL LK D+ +F + + FR + + + YG+
Sbjct: 508 QWLSCFDESGRAIVGMSADELMDLKE--NDEAKFMATFEAVNCKKLQFRCRARMDNYGEV 565
Query: 529 QRVKITVIRADQVNYSSESRYLLDLISK 556
QRV+ V+ A +++ SE L ++I +
Sbjct: 566 QRVRYQVMTASFLDFKSEGDKLAEMIKQ 593
>gi|452981313|gb|EME81073.1| hypothetical protein MYCFIDRAFT_29007 [Pseudocercospora fijiensis
CIRAD86]
Length = 621
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 156/452 (34%), Positives = 263/452 (58%), Gaps = 22/452 (4%)
Query: 111 APARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCF 170
A I PI A++PYQ +W IKAR T+KGD++ ++N G+GK+FS + LD + EIR T F
Sbjct: 172 AHGNITPIEAVSPYQHKWTIKARCTSKGDIKTWHNKNGEGKLFSANFLD-ETSEIRATMF 230
Query: 171 NAVVDRFYEIIEVGRVYLISK-GSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIP 229
N D++Y++++ G VY IS ++ A+K F++L N++E+ E + V+ +D+ +P
Sbjct: 231 NEQCDQWYDVLQEGSVYYISSPCKVQLAKKQFSNLPNDYELTFERDTQVE--KADDEGVP 288
Query: 230 KQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGME-TQRRILNLKDTSGRSV 288
+ ++SF ++ +++ E +++ DVIG++ V I+ K + +R L L D +G +V
Sbjct: 289 QVKYSFTNLESLQNVEKDTVTDVIGVLADVGEVNEIVSKTTSKPYSKRELTLVDDTGYNV 348
Query: 289 ELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEA 348
LT+WG K+ E D V++ K KV+DF G+S+ + S + I+PD EA
Sbjct: 349 RLTIWG--------KVAESFDASPEAVVAFKGVKVSDFGGRSLSLLSSGSMNIDPDIDEA 400
Query: 349 HELREWFDSGGKNAATVSISREIAAGGA----KNEIHKTVSQIKNEGLGRSEKPDWVTVR 404
++L+ W+ + G S + +A GA + + KT+ Q+++E LG ++ DW T++
Sbjct: 401 YKLKGWYQANGSTTQFASHANTMATVGATSGGRKDDTKTIQQVRDENLGMTDATDWFTLK 460
Query: 405 AFITFIKSDSFCYTACPLMIGDRQ-CNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQI 462
A I +IK D+F Y AC D Q CNKKVT+ N W+C++C + D YRY++ +
Sbjct: 461 ATIVYIKQDNFAYAACQTT--DPQPCNKKVTEVDNGSWRCEKCEKNWDAPKYRYIMSVNV 518
Query: 463 QDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKE 522
D TG W++ F + G+ +LG PA EL M+ E D+ R + ++F+ + K
Sbjct: 519 SDHTGQLWLSCFDDVGQAMLGMPANEL-MVAKEEGDEKRVTDAFADANCKSFVFKCRCKM 577
Query: 523 ELYGDEQRVKITVIRADQVNYSSESRYLLDLI 554
+ Y D+QRV+ V A+ +++ ES+ L D+I
Sbjct: 578 DNYQDQQRVRYQVQYANNIDFVRESKRLADII 609
>gi|360042651|emb|CCD78061.1| putative replication factor A 1, rfa1 [Schistosoma mansoni]
Length = 560
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 175/524 (33%), Positives = 281/524 (53%), Gaps = 46/524 (8%)
Query: 54 NSGTFNSQNPGSFSTPNSGTFRAPNAGSIVRSFQPTVQ-PPYQPPPNFRNHGPILKNEAP 112
+SG S+ P + + P A + S++P + PP F P
Sbjct: 51 SSGGVKSEQPPTVAKP---------ATTTSHSYEPEQKTPPKSSTGPFSGGQPSTPGTPG 101
Query: 113 A---RIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTC 169
R+ PI +LNPYQ RW I+ARV+ K +R ++ DGK+F+F L+D + GEIRVT
Sbjct: 102 CGLPRVFPIQSLNPYQNRWTIRARVSQKSAIRTWSKQGRDGKLFNFTLVD-ESGEIRVTG 160
Query: 170 FNAVVDRFYEIIE-----VGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEE 224
FNA VD+FY++IE V +VY +S+ +LK A K FN N++E+ L + S V C +
Sbjct: 161 FNAEVDKFYDMIEASNMFVNKVYYVSRANLKAANKQFNTTNNDYEMTLHSDSQVLPCEDS 220
Query: 225 D-DSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGM-ETQRRILNLKD 282
D S+P+ F+F I ++++ S VD++G+V I K E ++R L L D
Sbjct: 221 DTSSLPETHFNFISIGKLDTQSPGSFVDIVGVVHECGEVQSITAKASQRELRKRELGLVD 280
Query: 283 TSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFIN 342
+S V LTLW G++ + V PV+ +K+ K++DF+G+S+ P++ L I+
Sbjct: 281 SSNCLVRLTLW-------GEEAENFVGAS-HPVIVIKAAKISDFNGRSLSVSPTSSLLIS 332
Query: 343 P-DFAEAHELREWFDSGGKNAATVSISREI--AAGGAKNEIHKT--------VSQIKNEG 391
P + EA L+ W++ G+ + + E+ ++GGA + + +K G
Sbjct: 333 PTNIPEAIRLKGWYEHEGRFSNFETFRSEMVGSSGGADGVSSSSGVLGGWNLLQDVKASG 392
Query: 392 LGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEID 450
+G + K D+ T +A + F+K ++F Y AC CNKKV GN ++C++C +E
Sbjct: 393 VGANVKADYFTCKATVVFMKKENFMYQAC----STEGCNKKVIDLGNGLYRCEKCARETP 448
Query: 451 ECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRV 510
+C +R LL A+I D TG WVT FQ++ E +LG A++L +K QD+ + ++
Sbjct: 449 DCKWRLLLMAKIADITGDLWVTCFQDAAEVLLGQTAEKLGTIK-STQDETQLEKVFIESA 507
Query: 511 FNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLI 554
FN ++FRL+ K + Y DE+R+++ V V+ SR LL I
Sbjct: 508 FNSWIFRLRAKVDRYNDEERLRVVVADVKPVDLVDYSRRLLKAI 551
>gi|328857111|gb|EGG06229.1| hypothetical protein MELLADRAFT_74880 [Melampsora larici-populina
98AG31]
Length = 525
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 163/486 (33%), Positives = 267/486 (54%), Gaps = 34/486 (6%)
Query: 87 QPTVQPPYQPPPNFRNHGPILK---NEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRY 143
+PT+ P +P + N P + + +IPI L+PY +W IKARV K D++ +
Sbjct: 58 KPTITPS-KPMVSNSNAKPSINASNRQGGPSVIPIMGLSPYSNKWRIKARVVQKSDIKHW 116
Query: 144 NNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNH 203
+NARG+GK+FS D + G+I+ T FN VD+ YE + VG V+ +S+ + A+K FN
Sbjct: 117 HNARGEGKLFSVTFSD-ESGQIKATGFNDTVDQLYERLVVGDVFFVSRAKVSLAKKQFNT 175
Query: 204 LKNEWEIFLEATSTVDLCTEEDDSIPKQQFS-FRHISEIESAENNSIVDVIGIVISVNPS 262
L +++EI E + VD C + D IP Q + + + ++ E + + D++ ++
Sbjct: 176 LPHDYEIMFENQTEVDECVDAGD-IPLIQLNKYMQLGQLGEVEKDHVCDIVAVLKDAGEL 234
Query: 263 VPILRKNGM-ETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSG 321
I+ K E +R + L D S S+ +TLWG K+ + V+ +L+ +
Sbjct: 235 GQIVTKQTQREMSKRDITLVDQSAFSIRMTLWG----KQAEDFNAPVE----SILAFQGV 286
Query: 322 KVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAG--GAKNE 379
+V DF G+++ + S+ + INP+ EA +LR W+D+ G ATV+I AG G N+
Sbjct: 287 RVGDFQGRNLSMVSSSIMAINPEIPEAFDLRGWYDTEG---ATVAIQSHSGAGSVGMNNQ 343
Query: 380 I------HKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKV 433
KT+ Q+K E LG+SEK D+ +RA + FIK+++F Y ACP +CNKK+
Sbjct: 344 APITEDSLKTIVQVKQEELGQSEKGDYFNLRATVLFIKNETFSYPACPT----ERCNKKM 399
Query: 434 TQSG-NRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYML 492
Q G + W+C++C++ D+RYL+Q D +G+ +++ F E G+ +LG A EL L
Sbjct: 400 VQDGDDEWKCEKCDKTYPAPDHRYLIQLTASDYSGVMYLSGFNEVGQILLGKTANELIQL 459
Query: 493 KYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLD 552
+ E D+ F I + + F + K E+Y D R K ++IR +VN+ L D
Sbjct: 460 QQE--DEENFKRAILDATYRTWDFVCRAKREVYQDTPRTKYSIIRLGEVNWKEAGLGLAD 517
Query: 553 LISKSF 558
LI+K++
Sbjct: 518 LITKNY 523
>gi|331228428|ref|XP_003326881.1| hypothetical protein PGTG_08418 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309305871|gb|EFP82462.1| hypothetical protein PGTG_08418 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 618
Score = 275 bits (704), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 160/489 (32%), Positives = 263/489 (53%), Gaps = 37/489 (7%)
Query: 87 QPTVQPPYQPPPNFRNHGPILKNEAPAR--------IIPIAALNPYQGRWAIKARVTAKG 138
+P V+P P ++ P + P + IPIA ++P+ W IKARV+ K
Sbjct: 148 KPDVKPDIDVKPKPSSYKPNIPASKPNKPGVRRTGNHIPIAGVSPFANNWKIKARVSQKT 207
Query: 139 DLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQ 198
+++R++N+RGDGK+FS LD D G+IR T FN VD Y+ ++ G+VYLIS+G + A+
Sbjct: 208 EIKRWSNSRGDGKLFSVTFLD-DSGQIRATGFNDAVDNLYDSLQEGQVYLISRGKITIAK 266
Query: 199 KNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVIS 258
K +N +++EI E T+ V+ C + D+ +SE+ E ++++DV+ ++
Sbjct: 267 KPYNTTGHDYEIVFENTTEVEECGDSADTPKIILNKLTKLSELNDVEKDAVIDVVAVLKD 326
Query: 259 VNPSVPILRKNGMET-QRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLS 317
V I+ K +T +R + L D S S+ +TLWG K E + +++
Sbjct: 327 VGEISEIVSKATQKTIVKRDITLIDQSAYSIRMTLWG--------KTAETFEAPTESIVA 378
Query: 318 VKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVS-------ISRE 370
+ KV DF G+++ I S+ + +NPD EA +L+ W+D+ G NA S I RE
Sbjct: 379 FQGVKVGDFGGRNLSMISSSVMLVNPDIPEAFDLKGWYDNEGVNAKIQSFANTGTGIGRE 438
Query: 371 IAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCN 430
I KTV++IK+ LG +E+ D+ RA I +IKS++ Y ACP +CN
Sbjct: 439 ITEDSL-----KTVAEIKDTQLGMNERGDYFNFRATIMYIKSETISYPACPT----ERCN 489
Query: 431 KKVTQSG-NRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKEL 489
KK+ + G + W+C++C++ D+RYL+Q +QD TG W++ F E G+ IL A EL
Sbjct: 490 KKLLRDGDDEWRCEKCDKLFPAPDHRYLIQMTVQDHTGTLWLSGFNEVGQIILPMNANEL 549
Query: 490 YMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRY 549
+K D+ ++ +I+ Y + KEE Y D R K +V+R V++ +
Sbjct: 550 IGIKE--TDEAQYQKIVTDATAKTYTMVCRAKEETYNDVNRTKYSVLRIAPVDWVAAGLQ 607
Query: 550 LLDLISKSF 558
L + + K++
Sbjct: 608 LAETLLKNY 616
>gi|46137213|ref|XP_390298.1| hypothetical protein FG10122.1 [Gibberella zeae PH-1]
Length = 607
Score = 275 bits (703), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 156/452 (34%), Positives = 257/452 (56%), Gaps = 22/452 (4%)
Query: 110 EAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTC 169
A + I PI L+P+ +W IKARVTAK D++ ++ A G+GK+FS +LLD + GEI+ T
Sbjct: 167 HAGSNIYPIEGLSPFAHKWTIKARVTAKSDIKTWHKATGEGKLFSVNLLD-ESGEIKATG 225
Query: 170 FNAVVDRFYEIIEVGRVYLISK-GSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSI 228
FN D Y+ ++ G VY IS ++ A+K F++L N++E+ E + V+ E+ ++
Sbjct: 226 FNDQCDALYDQLQEGSVYYISTPCRVQLAKKQFSNLPNDYELTFERDTVVEKA-EDQTNV 284
Query: 229 PKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPIL-RKNGMETQRRILNLKDTSGRS 287
P+ +F+F I E++S E ++ VDVIG++ V I +K+G Q+R L L D +G S
Sbjct: 285 PQVRFNFCSIQELQSVEKDNTVDVIGVLKEVGEIGDITSKKDGRPFQKRELTLVDDTGFS 344
Query: 288 VELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAE 347
V +T+WG N D V++ K KV+DF GKS+ + S + ++PD +
Sbjct: 345 VRVTIWGKNANS--------FDAAPESVVAFKGTKVSDFGGKSLSLLSSGTMTVDPDIPD 396
Query: 348 AHELREWFDSGGKNAATVSISREIAAGGA--KNEIHKTVSQIKNEGLGRSEKPDWVTVRA 405
AH L+ W+DS G+ + + G A + E KT++Q+K+E LG ++ + T++A
Sbjct: 397 AHRLKGWYDSAGRTDTFATHQNMASVGSATGRKEDLKTIAQVKDENLGMDDQA-YYTIKA 455
Query: 406 FITFIKSDSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQD 464
I F+K ++FCY AC + CNKKVTQ + WQC++CN ++ +YRY+L + D
Sbjct: 456 TIVFVKQENFCYAACL----SQGCNKKVTQMPDGTWQCEKCNLSHEKPEYRYVLSLNVAD 511
Query: 465 QTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEEL 524
T W+T F + G +++G A E+ LK DD + ++ FR + K +
Sbjct: 512 HTSHQWLTGFDDFGRQVMGRTADEMMELKE--NDDTKLTAAFEEANCKKFTFRCRAKMDN 569
Query: 525 YGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
+G+ QR++ V+ +++ SE L +LI +
Sbjct: 570 FGEAQRIRYQVMSVTPLDFKSEGTKLAELIKQ 601
>gi|402085897|gb|EJT80795.1| replication factor-A protein 1 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 628
Score = 275 bits (703), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 159/448 (35%), Positives = 257/448 (57%), Gaps = 22/448 (4%)
Query: 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
A I PI +L+PYQ +W IKARV++K D+R ++ G+GK+FS +LLD + GEI+ T FN
Sbjct: 196 AVIYPIESLSPYQHKWTIKARVSSKSDIRTWHKPSGEGKLFSVNLLD-ETGEIKATGFNN 254
Query: 173 VVDRFYEIIEVGRVYLISK-GSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQ 231
++FY+++E +VY IS ++ A+K F +L N++E+ E + ++ E+ ++P+
Sbjct: 255 ECEKFYDLLEENQVYYISSPCRVQMAKKQFTNLPNDYEMTFEDGTQIEK-AEDQSNVPQV 313
Query: 232 QFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKN-GMETQRRILNLKDTSGRSVEL 290
+F+F +I E++ E ++ VD+IG++ I+ KN G +R L L D SG SV +
Sbjct: 314 RFNFCNIQELQEVEKDATVDLIGVLKEAADITQIVSKNSGKNFDKRELTLVDDSGYSVRM 373
Query: 291 TLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHE 350
T+WG K D V++ K KV DF G+S+ + S + ++PD EAH
Sbjct: 374 TIWG--------KTALGFDAKPESVIAFKGAKVGDFGGRSLSLLSSGTMTLDPDIPEAHR 425
Query: 351 LREWFDSGGKNA--ATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFIT 408
L+ W+DS G++ AT + AA G K+E+ KTVSQ+K+EGLG E + ++A I
Sbjct: 426 LKGWYDSSGRDNSFATHNTGSLGAATGRKDEL-KTVSQVKDEGLGM-ETDTYFNLKATIV 483
Query: 409 FIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGL 468
FI+ ++FCY AC C+KKV + G W+C++C +YRY++ + D TG
Sbjct: 484 FIRQENFCYPACM----SATCSKKVVEDGENWRCEKCQISHPRPEYRYIMSVNVNDHTGQ 539
Query: 469 TWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDE 528
WV+ F + G I+G A EL LK E D+ F + + FR + K + +G+
Sbjct: 540 LWVSCFDDVGRIIMGKSADELMALKEE--DEESFTRAFEAANCRRLSFRCRAKMDTFGEV 597
Query: 529 QRVKITVIRADQVNYSSESRYLLDLISK 556
QRV+ V+ A +++ E+ L ++I +
Sbjct: 598 QRVRYQVMSAAPMDWKGEAARLTEMIKQ 625
>gi|408398028|gb|EKJ77164.1| hypothetical protein FPSE_02614 [Fusarium pseudograminearum CS3096]
Length = 607
Score = 275 bits (703), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 156/452 (34%), Positives = 257/452 (56%), Gaps = 22/452 (4%)
Query: 110 EAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTC 169
A + I PI L+P+ +W IKARVTAK D++ ++ A G+GK+FS +LLD + GEI+ T
Sbjct: 167 HAGSNIYPIEGLSPFAHKWTIKARVTAKSDIKTWHKATGEGKLFSVNLLD-ESGEIKATG 225
Query: 170 FNAVVDRFYEIIEVGRVYLISK-GSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSI 228
FN D Y+ ++ G VY IS ++ A+K F++L N++E+ E + V+ E+ ++
Sbjct: 226 FNDQCDALYDQLQEGSVYYISTPCRVQLAKKQFSNLPNDYELTFERDTVVEKA-EDQTNV 284
Query: 229 PKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPIL-RKNGMETQRRILNLKDTSGRS 287
P+ +F+F I E++S E ++ VDVIG++ V I +K+G Q+R L L D +G S
Sbjct: 285 PQVRFNFCSIQELQSVEKDNTVDVIGVLKEVGEIGDITSKKDGRPFQKRELTLVDDTGFS 344
Query: 288 VELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAE 347
V +T+WG N D V++ K KV+DF GKS+ + S + ++PD +
Sbjct: 345 VRVTIWGKNANS--------FDAAPESVVAFKGTKVSDFGGKSLSLLSSGTMTVDPDIPD 396
Query: 348 AHELREWFDSGGKNAATVSISREIAAGGA--KNEIHKTVSQIKNEGLGRSEKPDWVTVRA 405
AH L+ W+DS G+ + + G A + E KT++Q+K+E LG ++ + T++A
Sbjct: 397 AHRLKGWYDSAGRTDTFATHQNMASVGSATGRKEDLKTIAQVKDENLGMDDQA-YYTIKA 455
Query: 406 FITFIKSDSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQD 464
I F+K ++FCY AC + CNKKVTQ + WQC++CN ++ +YRY+L + D
Sbjct: 456 TIVFVKQENFCYAACL----SQGCNKKVTQMPDGTWQCEKCNLSHEKPEYRYILSLNVAD 511
Query: 465 QTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEEL 524
T W+T F + G +++G A E+ LK DD + ++ FR + K +
Sbjct: 512 HTSHQWLTGFDDFGRQVMGRTADEMMELKE--NDDTKLTAAFEEANCKKFTFRCRAKMDN 569
Query: 525 YGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
+G+ QR++ V+ +++ SE L +LI +
Sbjct: 570 FGEAQRIRYQVMSVTPLDFKSEGTKLDELIKQ 601
>gi|194904079|ref|XP_001980997.1| GG17466 [Drosophila erecta]
gi|190652700|gb|EDV49955.1| GG17466 [Drosophila erecta]
Length = 603
Score = 275 bits (702), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 159/440 (36%), Positives = 246/440 (55%), Gaps = 22/440 (5%)
Query: 117 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDR 176
PI++L+PYQ +W IKARVT+K +R ++NARG+GK+FS DL+D + GEIR T F D+
Sbjct: 168 PISSLSPYQNKWVIKARVTSKSGIRTWSNARGEGKLFSMDLMD-ESGEIRATAFKEQCDK 226
Query: 177 FYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTE-EDDSIPKQQFSF 235
F+++I+V VY ISK LKPA K ++ L N +E+ + V LC + +DD IP+ +++
Sbjct: 227 FFDLIQVDSVYYISKCQLKPANKQYSSLNNAYEMTFSGETVVQLCDDTDDDPIPEIKYNL 286
Query: 236 RHISEIESAENNSIVDVIGIVISVNPSVP-ILRKNGMETQRRILNLKDTSGRSVELTLWG 294
IS++ EN + VD IGI V + R E ++R + L D S ++ LTLWG
Sbjct: 287 IPISDVSGMENKAAVDTIGICKEVGELQSFVARTTNKEFKKREITLVDMSNSAISLTLWG 346
Query: 295 DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLF-INPDFAEAHELRE 353
D +Q PV+ VK ++N+F+G ++ + INPD EAH+LR
Sbjct: 347 DEAVNFDGHVQ--------PVILVKGSRINEFNGGKSLSLGGGSIMKINPDIPEAHKLRG 398
Query: 354 WFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSD 413
WFD+GG + +S G E T+ + LG +KPD+ +A + +K +
Sbjct: 399 WFDNGGGDNVANMVSARTGGGNFSTE-WMTLKDARARNLGSGDKPDYFQCKAVVHIVKQE 457
Query: 414 SFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVT 472
+ Y ACP CNKKV GN +++C++CN YR L+ I D T WV+
Sbjct: 458 NAFYRACP----QSDCNKKVVDEGNDQFRCEKCNALFPNFKYRLLINMSIGDWTSNRWVS 513
Query: 473 AFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRV-FNQYLFRLKIKEELYGDEQRV 531
+F E GE++LG ++E + L++D E I S + F ++F+L+ K E++GD R
Sbjct: 514 SFNEVGEQLLGHTSQE---VGEALENDPAKAEQIFSALNFTSHIFKLRCKNEVFGDMTRN 570
Query: 532 KITVIRADQVNYSSESRYLL 551
K+TV +N+ +++LL
Sbjct: 571 KLTVQSVAPINHKEYNKHLL 590
>gi|392871534|gb|EJB12179.1| replication factor-a protein 1 (rpa1) [Coccidioides immitis RS]
Length = 607
Score = 275 bits (702), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 163/468 (34%), Positives = 256/468 (54%), Gaps = 27/468 (5%)
Query: 95 QPPPNFRNHGPILKNEAP--ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKV 152
QP + R P + AP A I PI AL+PY +W IKAR T K ++++ N G+G++
Sbjct: 148 QPQRHQRATVPTM---APTHANIYPIEALSPYSHKWTIKARCTNKSAIKKWYNRNGEGRL 204
Query: 153 FSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGS-LKPAQKNFNHLKNEWEIF 211
FS +LLD D GEIR T F D Y + E G VY IS ++ A++ F+++ N++E+
Sbjct: 205 FSVNLLD-DSGEIRATAFKEQCDLLYPLFEEGSVYYISSPCRVQMAKREFSNVNNDYELT 263
Query: 212 LEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKN-G 270
E + ++ + +D +P+ +F+F I + S E + +DV+G++ +V P + K+ G
Sbjct: 264 FERDTVIERAEDHED-VPQMRFNFTSIGHLHSVEKGTTIDVLGVLKTVEPVAEVPSKSTG 322
Query: 271 METQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKS 330
+R L L D +G SV LT+WG DV V++ K KV+DF G+S
Sbjct: 323 KRYTKRELMLVDDTGYSVPLTIWGGMATS--------FDVMPDSVVAFKGVKVSDFGGRS 374
Query: 331 IGTIPSTQLFINPDFAEAHELREWFDSGGK--NAATVSISREIA-AGGAKNEIHKTVSQI 387
+ + S + +PD EAH+L+ W+D+ GK AT ++S A + G + +I+K + ++
Sbjct: 375 LSLLNSGTITSDPDIEEAHKLKGWYDAQGKFDQFATHALSENAAISTGTRQDIYKAIVEV 434
Query: 388 KNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQ-SGNRWQCDRCN 446
++ LG +EKPD+ ++RA + FIK D+ CY AC +CNKKV Q +W C+ C
Sbjct: 435 RDNQLGMTEKPDYFSLRATVVFIKQDTICYPACV----QERCNKKVVQVDPEQWLCEHCE 490
Query: 447 QEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEII 506
+ +YRY+L A + D TG W+ F E G I+G PA L LK DD E I
Sbjct: 491 KSSLRPEYRYILSANVSDHTGQLWLNCFDEVGRAIMGMPANVLMELKE--SDDKAASEAI 548
Query: 507 RSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLI 554
+ + K K + + ++ RV+ V+ A +N+S ES L+ LI
Sbjct: 549 LHATCQMWNLKCKAKLDNFQNQPRVRYQVLGASPINFSHESSRLVSLI 596
>gi|169852738|ref|XP_001833051.1| replication factor-A protein 1 [Coprinopsis cinerea okayama7#130]
gi|116505845|gb|EAU88740.1| replication factor-A protein 1 [Coprinopsis cinerea okayama7#130]
Length = 604
Score = 275 bits (702), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 151/455 (33%), Positives = 248/455 (54%), Gaps = 21/455 (4%)
Query: 111 APAR-IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTC 169
P R + PI L+PYQ W IKARVT K ++++++NA+G+GK+F+ +D D GEIR T
Sbjct: 166 GPQRGVYPIEGLSPYQNNWTIKARVTQKSEMKQWSNAQGEGKLFNVTFMD-DSGEIRATA 224
Query: 170 FNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIP 229
FN V D Y +E G+VY +SK + A+K F+++ N++E+ LE + ++ C E ++P
Sbjct: 225 FNLVADDLYPKLEEGKVYYVSKARVGLAKKKFSNIPNDYELSLERNTEIEEC-HETTNLP 283
Query: 230 KQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPIL-RKNGMETQRRILNLKDTSGRSV 288
+++F ++ +++ ++I DVIG+V V I R N + +R L L D S SV
Sbjct: 284 TIKYNFVPLNGLDALAKDAICDVIGVVKDVGEVGTITSRSNNRQISKRDLTLVDKSAYSV 343
Query: 289 ELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEA 348
+TLWG K E V +++ K +V DF+G+++ ++ + +NPD E
Sbjct: 344 RMTLWG--------KQAEQFKVEPESIIAFKGVRVGDFNGRNLSMTSASTMQVNPDIEEC 395
Query: 349 HELREWFDSGGKNAATVSISREIAAG---GAKNEIHKTVSQIKNEGLGRSEKPDWVTVRA 405
LR W+DS G+ + S G G + + +T+ +K G G+S+KPD+ + RA
Sbjct: 396 FTLRGWYDSQGQTQTFQAQSSNNLGGTSLGFRRDEARTLEDVKQAGFGQSDKPDYFSTRA 455
Query: 406 FITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQ 465
I IK D+ Y ACP + CNKKV + + W+C++C + + +YRY++ + D
Sbjct: 456 TIIHIKDDNIAYPACPT----QGCNKKVIEEADGWRCEKCEKVFEAPEYRYIMSMMVADH 511
Query: 466 TGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELY 525
TG W F E G + G A +L +K D ++ I N Y F + KE+ +
Sbjct: 512 TGKAWFQGFNEVGVTVYGMSANDLVQIKN--NDHAQYKAIQYHAACNTYNFSCRAKEDEF 569
Query: 526 GDEQRVKITVIRADQVNYSSESRYLLDLISKSFRK 560
+RV+ + R +V+Y E+ YL DL+ S+ +
Sbjct: 570 NGVRRVRFGISRLAKVDYKEEAGYLRDLLYSSWAR 604
>gi|190345993|gb|EDK37976.2| hypothetical protein PGUG_02074 [Meyerozyma guilliermondii ATCC
6260]
Length = 469
Score = 274 bits (701), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 150/452 (33%), Positives = 257/452 (56%), Gaps = 34/452 (7%)
Query: 117 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDR 176
PI +L+PYQ W IKARV+ KGD+R+++NARG+GK+F+ + LD + EIR T FN V ++
Sbjct: 26 PIESLSPYQNNWRIKARVSFKGDIRKWSNARGEGKLFNVNFLD-ESDEIRATAFNDVAEQ 84
Query: 177 FYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFR 236
FY +E G+VY + + ++ A+ F+HL + +E+ L+ + + C + D +PK F+F
Sbjct: 85 FYNTLEEGKVYTVERARIQQAKPQFSHLTHPYELALDKDTVITECFDTSD-VPKLHFNFT 143
Query: 237 HISEIESAENNSIVDVIGIVISVNPSVPILRKN-GMETQRRILNLKDTSGRSVELTLWG- 294
+ +I++AE N++VDVIG++ + NP I K+ G RR + + D S ++++ LW
Sbjct: 144 KLDKIQAAEVNAVVDVIGVLKTANPVFQITAKSTGKAFDRRNITIVDDSNFAIDIGLWNQ 203
Query: 295 ---DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHEL 351
+F EG V++ K KV DF G+S+ S + +NPD EA++L
Sbjct: 204 TALEFNTSEGS------------VIAFKGCKVQDFGGRSLTLTHSGSMVVNPDTPEAYQL 251
Query: 352 REWFDSGGKNAATVSISREIAAGGAKNEI--HKTVSQIKNEGLGRSEKPDWVTVRAFITF 409
+ W+D+ G N S+ ++ AG +N I KT+ + + LG EKPD+ +V+A I++
Sbjct: 252 KGWYDNQGMNENFKSL--KVEAGPNQNYIKNRKTILAAQEDNLGMHEKPDFFSVKATISY 309
Query: 410 IKSDSFCYTACPLMI-GDRQ--------CNKKVTQSGNRWQCDRCNQEIDECDYRYLLQA 460
K+D+F Y AC + G+ Q CN+KV + + W+C++CN + E +RY+L
Sbjct: 310 FKTDNFSYPACSNTVPGNSQAPGQQENTCNRKVLEQSDGWRCEKCNITLPEPLHRYILNC 369
Query: 461 QIQDQTGLTWVTAFQESGEEILGCPAKELYML--KYELQDDVRFGEIIRSRVFNQYLFRL 518
I D+TG W T F + ++ G A +L L K ++ + F +++ S ++ FRL
Sbjct: 370 SITDETGQLWTTLFDQEARKLFGMSAGDLINLKEKQDMNESNEFADLMESITMKEFNFRL 429
Query: 519 KIKEELYGDEQRVKITVIRADQVNYSSESRYL 550
+ +++ Y R++ + V++ +E L
Sbjct: 430 RARQDSYNGNVRIRYQTMSLFDVDFVAECDEL 461
>gi|19111884|ref|NP_595092.1| DNA replication factor A subunit Ssb1 [Schizosaccharomyces pombe
972h-]
gi|2498845|sp|Q92372.1|RFA1_SCHPO RecName: Full=Replication factor A protein 1; AltName:
Full=Single-stranded DNA-binding protein p68 subunit
gi|1502413|gb|AAC49437.1| single-stranded DNA binding protein p68 subunit
[Schizosaccharomyces pombe]
gi|1814272|gb|AAC49694.1| Rpa1 [Schizosaccharomyces pombe]
gi|4049512|emb|CAA22533.1| DNA replication factor A subunit Ssb1 [Schizosaccharomyces pombe]
Length = 609
Score = 274 bits (701), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 149/453 (32%), Positives = 252/453 (55%), Gaps = 21/453 (4%)
Query: 109 NEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVT 168
N I PI L+PYQ +W I+ARVT K +++ ++N RG+GK+FS +LLD + GEIR T
Sbjct: 173 NSLSTIIYPIEGLSPYQNKWTIRARVTNKSEVKHWHNQRGEGKLFSVNLLD-ESGEIRAT 231
Query: 169 CFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSI 228
FN VD FY+I++ G VY IS+ + A+K + +++NE+E+ E + + E+ ++
Sbjct: 232 GFNDQVDAFYDILQEGSVYYISRCRVNIAKKQYTNVQNEYELMFERDTEIRKA-EDQTAV 290
Query: 229 PKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPIL-RKNGMETQRRILNLKDTSGRS 287
P +FSF + E+ ++++DVIG++ +V P I R +R + + D +G
Sbjct: 291 PVAKFSFVSLQEVGDVAKDAVIDVIGVLQNVGPVQQITSRATSRGFDKRDITIVDQTGYE 350
Query: 288 VELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAE 347
+ +TLWG K V +L+ K KVNDF G+S+ + S+ + ++PD E
Sbjct: 351 MRVTLWG--------KTAIEFSVSEESILAFKGVKVNDFQGRSLSMLTSSTMSVDPDIQE 402
Query: 348 AHELREWFDSGGKN---AATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVR 404
+H L+ W+D G+ A IS ++ G E K +++++ E LG SE PD+ +++
Sbjct: 403 SHLLKGWYDGQGRGQEFAKHSVISSTLSTTGRSAE-RKNIAEVQAEHLGMSETPDYFSLK 461
Query: 405 AFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQD 464
I +I+ + Y ACP CNKKV G W+C++CN+E D YRY++ + D
Sbjct: 462 GTIVYIRKKNVSYPACPAA----DCNKKVFDQGGSWRCEKCNKEYDAPQYRYIITIAVGD 517
Query: 465 QTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEEL 524
TG W+ F + G+ I+ A EL L+ D+ F + + Y+F+ + K++
Sbjct: 518 HTGQLWLNVFDDVGKLIMHKTADELNDLQE--NDENAFMNCMAEACYMPYIFQCRAKQDN 575
Query: 525 YGDEQRVKITVIRADQVNYSSESRYLLDLISKS 557
+ E RV+ TV+ +Q+++ ES+ L++ I +
Sbjct: 576 FKGEMRVRYTVMSINQMDWKEESKRLINFIESA 608
>gi|353239748|emb|CCA71646.1| probable Replication factor-A protein 1 [Piriformospora indica DSM
11827]
Length = 611
Score = 274 bits (701), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 169/501 (33%), Positives = 263/501 (52%), Gaps = 25/501 (4%)
Query: 62 NPGSFSTP-NSGTFRAPNAGSIVRSFQPTVQPPYQPPPNFRNHGPILKNEAPARIIPIAA 120
NPG + P NS + + + + + P P + GP N AP I PI
Sbjct: 115 NPGKATAPGNSDSMAVDKSSNAPSTSSSDLVPSKPVPAPAASRGPS-GNNAP--IFPIEG 171
Query: 121 LNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEI 180
LNPY +W IKARVT K + +R++N +G+G++FS +L+D + GEI+ T FNA VD Y+
Sbjct: 172 LNPYHNKWTIKARVTMKSERKRWSNNKGEGQLFSVNLMD-ETGEIKATAFNAAVDALYDR 230
Query: 181 IEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTE-EDDSIPKQQFSFRHIS 239
E G+VY ISKG + A+K F++L ++EI +++ + V+ C + E D +P+ Q+SF +
Sbjct: 231 FEEGKVYYISKGRVVIAKKAFSNLTCDYEITMDSKTEVEECMDAEADKVPQIQYSFVSLK 290
Query: 240 EIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNK 299
++E ++ VDVI +V SV I K G +R L L D SG S TLWG
Sbjct: 291 DLEEKPKDASVDVIAVVHSVGELGSINTKQGKPLSKRDLVLADRSGYSCRCTLWG----- 345
Query: 300 EGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGG 359
K E P+++ K KV+DF+G+S+ S+ + I+ D E + LR W+ G
Sbjct: 346 ---KQAEQWSHNDNPIVAFKGLKVSDFNGRSLSLNSSSTMHIDVDMPETNSLRGWYQKEG 402
Query: 360 KNA-----ATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDS 414
+ G K E KT+ +++ +G +KP++ RA I IK ++
Sbjct: 403 HKGNFNTHGGGGAGAARGSSGFKREEMKTLLEVRESEMGSRDKPEFFNSRASIVTIKQEN 462
Query: 415 FCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAF 474
Y AC CNKKV +GN W C++C++ + YRYLL Q+ D T W+ AF
Sbjct: 463 IAYPACMA----EGCNKKVNDTGNGWHCEKCDKTWPKPQYRYLLGIQVADHTAQAWLQAF 518
Query: 475 QESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKIT 534
+ EI+G A +L +K D+ F ++I Y F + K + Y D+ RV+
Sbjct: 519 NDVATEIIGMNADQLMEIKD--NDEAEFQKVIHKAQSKTYNFECRAKNDTYNDQTRVRYG 576
Query: 535 VIRADQVNYSSESRYLLDLIS 555
VI+A +++++E+R L L+S
Sbjct: 577 VIKAYPLDFTAETRNLHKLLS 597
>gi|198452404|ref|XP_001358758.2| GA21928 [Drosophila pseudoobscura pseudoobscura]
gi|198131919|gb|EAL27901.2| GA21928 [Drosophila pseudoobscura pseudoobscura]
Length = 603
Score = 274 bits (701), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 162/441 (36%), Positives = 245/441 (55%), Gaps = 24/441 (5%)
Query: 117 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDR 176
PI++L+PYQ +W IKARVT+K +R ++N RG+GK+FS DL+D + GEIR T F D+
Sbjct: 167 PISSLSPYQNKWVIKARVTSKTGIRTWSNPRGEGKLFSMDLMD-ESGEIRATAFKEQCDK 225
Query: 177 FYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDD-SIPKQQFSF 235
++++I+V VY SK LKPA K F+ L N +E+ + V LC + DD +IP +++
Sbjct: 226 YFDMIQVDSVYFFSKCQLKPANKQFSQLNNAYEMTFTGETAVQLCEDADDGAIPDIKYNL 285
Query: 236 RHISEIESAENNSIVDVIGIVISVNPSVPIL-RKNGMETQRRILNLKDTSGRSVELTLWG 294
ISE+ EN + VD IGI V R E ++R L L D S ++ LTLWG
Sbjct: 286 VPISEVSGMENKAAVDTIGICKEVGELQAFTSRTTNKEFKKRDLTLVDMSNSAISLTLWG 345
Query: 295 DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLF-INPDFAEAHELRE 353
D +Q PV+ VK ++N+F+G ++ + INPD EAH+LR
Sbjct: 346 DDAVNFDGHVQ--------PVILVKGTRINEFNGGKSLSLGGGSIMKINPDIPEAHKLRG 397
Query: 354 WFDS-GGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKS 412
WFD+ GG N A + +R GG+ + T+ + LG +KPD+ +A + +K
Sbjct: 398 WFDNGGGDNVANMVSAR--TGGGSFSTDWMTLKDARARNLGSGDKPDYFQCKAVVHIVKQ 455
Query: 413 DSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWV 471
++ Y ACP CNKKV GN +++C+RCN YR L+ + D T WV
Sbjct: 456 ENAFYRACP----QADCNKKVVDEGNDQYRCERCNALYPNFKYRLLVNMSVGDWTSNRWV 511
Query: 472 TAFQESGEEILGCPAKELYMLKYELQDD-VRFGEIIRSRVFNQYLFRLKIKEELYGDEQR 530
T F E+GE++L ++E + L++D + EI + F ++F+L+ K E+YGD R
Sbjct: 512 TCFNETGEQLLKHTSQE---IGEALENDPTKAEEIFSALNFTSHIFKLRCKNEVYGDMTR 568
Query: 531 VKITVIRADQVNYSSESRYLL 551
K+TV +N+ +R+LL
Sbjct: 569 NKLTVQSVGPLNHKEYNRHLL 589
>gi|195145076|ref|XP_002013522.1| GL24182 [Drosophila persimilis]
gi|194102465|gb|EDW24508.1| GL24182 [Drosophila persimilis]
Length = 603
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 162/441 (36%), Positives = 245/441 (55%), Gaps = 24/441 (5%)
Query: 117 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDR 176
PI++L+PYQ +W IKARVT+K +R ++N RG+GK+FS DL+D + GEIR T F D+
Sbjct: 167 PISSLSPYQNKWVIKARVTSKTGIRTWSNPRGEGKLFSMDLMD-ESGEIRATAFKEQCDK 225
Query: 177 FYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDD-SIPKQQFSF 235
++++I+V VY SK LKPA K F+ L N +E+ + V LC + DD +IP +++
Sbjct: 226 YFDMIQVDSVYFFSKCQLKPANKQFSQLNNAYEMTFTGETAVQLCEDADDGAIPDIKYNL 285
Query: 236 RHISEIESAENNSIVDVIGIVISVNPSVPIL-RKNGMETQRRILNLKDTSGRSVELTLWG 294
ISE+ EN + VD IGI V R E ++R L L D S ++ LTLWG
Sbjct: 286 VPISEVSGMENKAAVDTIGICKEVGELQAFTSRTTNKEFKKRDLTLVDMSNSAISLTLWG 345
Query: 295 DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLF-INPDFAEAHELRE 353
D +Q PV+ VK ++N+F+G ++ + INPD EAH+LR
Sbjct: 346 DDAVNFDGHVQ--------PVILVKGTRINEFNGGKSLSLGGGSIMKINPDIPEAHKLRG 397
Query: 354 WFDS-GGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKS 412
WFD+ GG N A + +R GG+ + T+ + LG +KPD+ +A + +K
Sbjct: 398 WFDNGGGDNVANMVSAR--TGGGSFSTDWMTLKDARARNLGSGDKPDYFQCKAVVHIVKQ 455
Query: 413 DSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWV 471
++ Y ACP CNKKV GN +++C+RCN YR L+ + D T WV
Sbjct: 456 ENAFYRACP----QADCNKKVVDEGNDQYRCERCNALYPNFKYRLLVNMSVGDWTSNRWV 511
Query: 472 TAFQESGEEILGCPAKELYMLKYELQDD-VRFGEIIRSRVFNQYLFRLKIKEELYGDEQR 530
T F E+GE++L ++E + L++D + EI + F ++F+L+ K E+YGD R
Sbjct: 512 TCFNETGEQLLKHTSQE---IGEALENDPTKAEEIFSALNFTSHIFKLRCKNEVYGDMTR 568
Query: 531 VKITVIRADQVNYSSESRYLL 551
K+TV +N+ +R+LL
Sbjct: 569 NKLTVQSVGPLNHKEYNRHLL 589
>gi|425772845|gb|EKV11231.1| hypothetical protein PDIP_56740 [Penicillium digitatum Pd1]
gi|425773582|gb|EKV11927.1| hypothetical protein PDIG_47360 [Penicillium digitatum PHI26]
Length = 1107
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 160/449 (35%), Positives = 261/449 (58%), Gaps = 24/449 (5%)
Query: 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
A I PI A++PY +W IKAR T+K ++ ++N G+GK+FS +LLD D GEIR T FN
Sbjct: 171 ATIYPIEAISPYSNKWTIKARCTSKSSIKTWHNKNGEGKLFSVNLLD-DSGEIRGTGFND 229
Query: 173 VVDRFYEIIEVGRVYLISKGS-LKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQ 231
D YE+ + G VY IS ++ A+K F +L N++E+ E + V+ E++D +P+
Sbjct: 230 QCDMLYELFQEGSVYYISSPCRVQIAKKQFTNLNNDYELTFERDTIVEKAEEQND-VPQI 288
Query: 232 QFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKN-GMETQRRILNLKDTSGRSVEL 290
+F+F ++++++ E ++ DVIG++ V + I K+ G +R L L D +G SV L
Sbjct: 289 RFNFTTVADLQTVEKDTTTDVIGVLKDVGETSQITSKSTGKPYDKRELTLVDNTGFSVRL 348
Query: 291 TLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHE 350
T+WG N V V++ K KV+DF G+S+ + S + ++PD EAH
Sbjct: 349 TIWGASANN--------FSVAPESVVAFKGVKVSDFGGRSLSLLSSGSMTVDPDIGEAHR 400
Query: 351 LREWFDSGGKN---AATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFI 407
LR W+D+ G++ + S+S + G K + KTV+Q++ E LG SE PD+ +++A +
Sbjct: 401 LRGWYDAQGRSENFTSHASLSNATNSTG-KTDRFKTVAQVREEQLGMSETPDYFSLKATV 459
Query: 408 TFIKSDS-FCYTACPLMIGDRQCNKKVTQ-SGNRWQCDRCNQEIDECDYRYLLQAQIQDQ 465
+IK DS +CY AC CNKKVT+ +W+C+ C++ + +YR+++ + D
Sbjct: 460 IYIKQDSTWCYPACL----SENCNKKVTELDPGQWRCEMCDKTHLKPEYRFIMPISVSDH 515
Query: 466 TGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELY 525
TG W++ F ++G I+G A EL L+ + D FGE+ + + FR + K + +
Sbjct: 516 TGQLWLSCFDDTGRNIMGMSADELMQLRED--DPSAFGEVFQGANCQTWSFRCRAKIDNF 573
Query: 526 GDEQRVKITVIRADQVNYSSESRYLLDLI 554
GD+QRV+ V + +NYS E+ L D+I
Sbjct: 574 GDQQRVRYQVSSSQAINYSDEASRLADII 602
>gi|146420901|ref|XP_001486403.1| hypothetical protein PGUG_02074 [Meyerozyma guilliermondii ATCC
6260]
Length = 469
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 150/452 (33%), Positives = 256/452 (56%), Gaps = 34/452 (7%)
Query: 117 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDR 176
PI L+PYQ W IKARV+ KGD+R+++NARG+GK+F+ + LD + EIR T FN V ++
Sbjct: 26 PIELLSPYQNNWRIKARVSFKGDIRKWSNARGEGKLFNVNFLD-ESDEIRATAFNDVAEQ 84
Query: 177 FYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFR 236
FY +E G+VY + + ++ A+ F+HL + +E+ L+ + + C + D +PK F+F
Sbjct: 85 FYNTLEEGKVYTVERARIQQAKPQFSHLTHPYELALDKDTVITECFDTSD-VPKLHFNFT 143
Query: 237 HISEIESAENNSIVDVIGIVISVNPSVPILRKN-GMETQRRILNLKDTSGRSVELTLWG- 294
+ +I++AE N++VDVIG++ + NP I K+ G RR + + D S ++++ LW
Sbjct: 144 KLDKIQAAEVNAVVDVIGVLKTANPVFQITAKSTGKAFDRRNITIVDDSNFAIDIGLWNQ 203
Query: 295 ---DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHEL 351
+F EG V++ K KV DF G+S+ S + +NPD EA++L
Sbjct: 204 TALEFNTSEGS------------VIAFKGCKVQDFGGRSLTLTHSGSMVVNPDTPEAYQL 251
Query: 352 REWFDSGGKNAATVSISREIAAGGAKNEI--HKTVSQIKNEGLGRSEKPDWVTVRAFITF 409
+ W+D+ G N S+ ++ AG +N I KT+ + + LG EKPD+ +V+A I++
Sbjct: 252 KGWYDNQGMNENFKSL--KVEAGPNQNYIKNRKTILAAQEDNLGMHEKPDFFSVKATISY 309
Query: 410 IKSDSFCYTACPLMI-GDRQ--------CNKKVTQSGNRWQCDRCNQEIDECDYRYLLQA 460
K+D+F Y AC + G+ Q CN+KV + + W+C++CN + E +RY+L
Sbjct: 310 FKTDNFSYPACSNTVPGNSQAPGQQENTCNRKVLEQSDGWRCEKCNITLPEPLHRYILNC 369
Query: 461 QIQDQTGLTWVTAFQESGEEILGCPAKELYML--KYELQDDVRFGEIIRSRVFNQYLFRL 518
I D+TG W T F + ++ G A +L L K ++ + F +++ S ++ FRL
Sbjct: 370 SITDETGQLWTTLFDQEARKLFGMSAGDLINLKEKQDMNESNEFADLMESITMKEFNFRL 429
Query: 519 KIKEELYGDEQRVKITVIRADQVNYSSESRYL 550
+ +++ Y R++ + V++ +E L
Sbjct: 430 RARQDSYNGNVRIRYQTMSLFDVDFVAECDEL 461
>gi|225557692|gb|EEH05977.1| replication factor [Ajellomyces capsulatus G186AR]
Length = 606
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 166/445 (37%), Positives = 257/445 (57%), Gaps = 21/445 (4%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
I PI AL+PY +W IKAR T K ++ ++N G+GK+FS +LLD D GEIR T F
Sbjct: 172 IYPIEALSPYSHKWTIKARCTNKSAIKTWHNKNGEGKLFSVNLLD-DSGEIRATAFKDQC 230
Query: 175 DRFYEIIEVGRVYLISK-GSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQF 233
D Y + E G VY IS ++ A+K FN+L NE+E+ E + V+ E++D +P+ +F
Sbjct: 231 DSLYGVFEEGCVYYISSPCRVQMAKKAFNNLNNEYELTFEKDTIVEKAEEQND-VPQIRF 289
Query: 234 SFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGME-TQRRILNLKDTSGRSVELTL 292
+F +I+ ++S E + +DVIG++ V IL K + +R L L D +G SV LT+
Sbjct: 290 NFTNIANLQSVEAGTTIDVIGVLKDVGELSQILSKTTSKPYDKRDLTLVDNTGYSVRLTV 349
Query: 293 WGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELR 352
WG+ KE + E V++ K KV+DF+G+S+ + S + ++PD +AH+L+
Sbjct: 350 WGNIA-KEFDSVPE-------SVVAFKGVKVSDFNGRSLSLLSSGSMTVDPDIEDAHKLK 401
Query: 353 EWFDSGGKNAATVSI-SREIAAG-GAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFI 410
W+D+ G++ S S AAG G + KT+ Q+ LG SEKPD+ +V+A + ++
Sbjct: 402 GWYDAQGRSETFASHDSMNNAAGFGDRASSFKTIVQVHEGNLGMSEKPDYFSVKATVVYV 461
Query: 411 KSDSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQTGLT 469
K D+ Y AC + D+ CNKKV Q N +W+C+RC+Q +YRY+L + D TG
Sbjct: 462 KQDTMAYPAC---LTDK-CNKKVLQDENGQWRCERCDQSFPHPEYRYILSVNVCDHTGAL 517
Query: 470 WVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQ 529
W++ F E G+ ILG A EL LK D+ + E+++ + F + K + + D+Q
Sbjct: 518 WLSCFDEVGKIILGTSANELMELKE--NDERAYEELVQRANCRAWNFNCRAKMDNFQDQQ 575
Query: 530 RVKITVIRADQVNYSSESRYLLDLI 554
RV+ V ++YS ES L +LI
Sbjct: 576 RVRYQVSSVSAIDYSVESARLAELI 600
>gi|254565291|ref|XP_002489756.1| Subunit of heterotrimeric Replication Protein A (RPA) [Komagataella
pastoris GS115]
gi|238029552|emb|CAY67475.1| Subunit of heterotrimeric Replication Protein A (RPA) [Komagataella
pastoris GS115]
gi|328350171|emb|CCA36571.1| Replication protein A 70 kDa DNA-binding subunit [Komagataella
pastoris CBS 7435]
Length = 621
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 147/451 (32%), Positives = 266/451 (58%), Gaps = 30/451 (6%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
I I LNPYQ W IKARV+ K D+R+++N RG+G++F+ +LLD + EIR T FN V
Sbjct: 180 IHAIDQLNPYQNNWTIKARVSYKSDMRKWSNQRGEGQLFNVNLLD-ETNEIRATAFNDVA 238
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
D++Y++++ G+VY ISK ++PA+ F++L + +E+ L+ + + + E+ +P F+
Sbjct: 239 DKYYDLLQEGKVYYISKARIQPAKPQFSNLTHTYELALDRDTQI-IEAEDASDVPSLHFN 297
Query: 235 FRHISEIESAENNSIVDVIGIVISVNPSVPILRKN-GMETQRRILNLKDTSGRSVELTLW 293
F +++++ + N+I+DVIG++ VNP+ I+ K+ G RR + + D +G ++ + LW
Sbjct: 298 FVKLNKVQDLDANAIIDVIGVIKVVNPAFQIVAKSTGRPFDRRDIEVVDNTGFAITVGLW 357
Query: 294 GDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELRE 353
+ L+ + VG V++ K KV DF G+S+ S + NPD EA++L+
Sbjct: 358 NNTA------LEFDIPVG--SVVAFKGAKVQDFGGRSLSLTQSATIITNPDSPEAYQLKA 409
Query: 354 WFD-SGGKNAATVSISREIAAGGAKN-----EIHKTVSQIKNEGLGRSEKPDWVTVRAFI 407
W+D GG N S+ E+++ N + KT+ Q ++E LG+++KPD+ +++A+I
Sbjct: 410 WYDQQGGSNQEFKSLKNEVSSNSGLNTKQDIQSRKTILQAQSEELGKNDKPDYFSIKAYI 469
Query: 408 TFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQT 466
++I++++F Y AC CN+KV QS + W+C++C+ + ++RY+L + D T
Sbjct: 470 SYIRTENFSYPAC----ASEGCNRKVIQQSDDTWRCEKCDVNHPKPNHRYILTLSVVDHT 525
Query: 467 GLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFN-----QYLFRLKIK 521
G WVT F + +++LG A EL LK ++D+ +VFN ++ FR+K
Sbjct: 526 GQLWVTLFDDQAQQLLGQSAGELIDLK---ENDMSENNHAFQQVFNRIQMKEFSFRVKAS 582
Query: 522 EELYGDEQRVKITVIRADQVNYSSESRYLLD 552
+ Y + R++ + +++++ E+ L D
Sbjct: 583 PDSYKGQTRIRYNAVSLAKLDFALEADALAD 613
>gi|301115057|ref|XP_002999298.1| replication protein A 70 kDa DNA-binding subunit, putative
[Phytophthora infestans T30-4]
gi|262111392|gb|EEY69444.1| replication protein A 70 kDa DNA-binding subunit, putative
[Phytophthora infestans T30-4]
Length = 629
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 162/475 (34%), Positives = 258/475 (54%), Gaps = 28/475 (5%)
Query: 92 PPYQPPPNFRNHGPILKNEAPARIIPIAALNPYQG-RWAIKARVTAKGDLRRYNNARGDG 150
PP +P + N GP+++ + R+ I +LNPY G RW IKARVT + ++ + N+RG G
Sbjct: 171 PPTKPAASTYNRGPVVRQDPNIRLSDIQSLNPYAGGRWTIKARVTTRSPIKNWTNSRGSG 230
Query: 151 KVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEI 210
K+FS DLLD+ GEIR T FN VD+FYE++ G ++ + G +K + F+ + N++E+
Sbjct: 231 KLFSVDLLDAKKGEIRATFFNDGVDKFYEMLRPGGIFYFAGGKVKMTNRRFSSVDNDYEV 290
Query: 211 FLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNG 270
+ S + ED I + Q++F+ I+EIE+ +S VD+IGIV V P K G
Sbjct: 291 TFDPHSDISPA-PEDGQISQMQYAFKKIAEIENVPADSNVDIIGIVRDVTPVNEFTSKAG 349
Query: 271 METQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKS 330
+ +R ++L D S ++ T+W + +E VL++K +V++F+G+S
Sbjct: 350 KQLFKRDISLVDDSNVEIKCTMWNEQAQQECSNWLNQ-------VLAIKGCRVSEFNGRS 402
Query: 331 IGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEI----HKTVSQ 386
+ T S+ +NP EA L WF +GG T S+S G + ++
Sbjct: 403 LSTAGSSSFTVNPTIPEAGHLVTWFSNGGNATQTKSLSSGGGGFGGGSLGSFSERAVIND 462
Query: 387 IKNEGLGRSEKPDWVTVRAFITFIKSDS-FCYTACPLMIGDRQCNKKVTQS-GNRWQCDR 444
IK++ LG +KPD++TV+ + FIK D+ Y ACP +C KKV + C++
Sbjct: 463 IKSKQLGFGQKPDYITVKGTVNFIKHDTGIYYQACP------KCQKKVVADVAQNYTCEK 516
Query: 445 CNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGC-PAKELYMLKYELQDD--VR 501
C C+ RY+L + D TG TW T F + G+ ++G A E+ EL+D
Sbjct: 517 CQTSYPNCENRYILSVIMLDHTGSTWTTCFNDQGKVVMGGRTADEI----GELRDTNPAL 572
Query: 502 FGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
F I + +F QY+ RL++K E +E RVK +V+ + VN+ ES+ LL I++
Sbjct: 573 FESIFKEALFKQYVCRLRVKAENVQEELRVKASVVNLEPVNFVQESKDLLQAIAQ 627
>gi|298710029|emb|CBJ31747.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 419
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 154/429 (35%), Positives = 241/429 (56%), Gaps = 24/429 (5%)
Query: 140 LRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQK 199
+R++NNARG G +FS DLLD DG EI+ T F D++++I++ G+VY + G +K A K
Sbjct: 1 MRQWNNARGSGTLFSVDLLDEDGSEIKGTFFKQDADKWFQILQEGQVYAFTGGKVKVANK 60
Query: 200 NFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISV 259
F+ E+E+ ++++ ++ + D I ++F ++E+E+ E N ++DVI +V SV
Sbjct: 61 KFSSFNAEYELTFDSSTQINPIND-DSRIGSATYAFVKLNEMEALEANKVLDVIAVVKSV 119
Query: 260 NPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVK 319
+ + G + +R L L D + + LTLWGD +G + + PV++ K
Sbjct: 120 EDHAQFVSRAGKQLDKRNLILVDDTCTEINLTLWGDMAKADGSRWEGN------PVVAFK 173
Query: 320 SGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSIS-----REIAAG 374
K++DFSG+S+ ++ ++ L +PD E +LR WFD+ G ++ S++ +
Sbjct: 174 GVKLSDFSGRSLNSLNASTLVNDPDVPETADLRAWFDAAGGGSSFKSVTVRNGGGGGSDD 233
Query: 375 GAKNEIHK--TVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSF---CYTACPLMIGDRQC 429
AK +I + T+ I + LG EKPDW V+A I+FIK D YTACP C
Sbjct: 234 AAKKDISQRYTLQSITDGNLGNGEKPDWAVVKATISFIKLDGERLPWYTACP----KEGC 289
Query: 430 NKKVTQS-GNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGC-PAK 487
NKKVT++ WQC++CNQ EC RY+L QI D TG WVTAF + G E+L A
Sbjct: 290 NKKVTETMEGAWQCEKCNQTHPECQRRYMLSMQISDNTGKAWVTAFNDQGVELLDNRTAD 349
Query: 488 ELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSES 547
EL+ +K E +D E+ F Y+ L++K ++Y DE R + T+ R V+ +E
Sbjct: 350 ELFQMKEE-GNDAELEELFSEACFKTYMLTLRVKTDMYNDETRSRKTLQRLAPVDVKAEC 408
Query: 548 RYLLDLISK 556
LLD I+K
Sbjct: 409 AALLDAIAK 417
>gi|325095428|gb|EGC48738.1| replication factor A 1 [Ajellomyces capsulatus H88]
Length = 602
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 166/445 (37%), Positives = 257/445 (57%), Gaps = 21/445 (4%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
I PI AL+PY +W IKAR T K ++ ++N G+GK+FS +LLD D GEIR T F
Sbjct: 168 IYPIEALSPYSHKWTIKARCTNKSAIKTWHNKNGEGKLFSVNLLD-DSGEIRATAFKDQC 226
Query: 175 DRFYEIIEVGRVYLISK-GSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQF 233
D Y + E G VY IS ++ A+K FN+L NE+E+ E + V+ E++D +P+ +F
Sbjct: 227 DSLYGVFEEGCVYYISSPCRVQMAKKAFNNLNNEYELTFEKDTIVEKAEEQND-VPQIRF 285
Query: 234 SFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGME-TQRRILNLKDTSGRSVELTL 292
+F +I+ ++S E + +DVIG++ V IL K + +R L L D +G SV LT+
Sbjct: 286 NFTNIANLQSVEAGTTIDVIGVLKDVGELSQILSKTTSKPYDKRDLTLVDNTGYSVRLTV 345
Query: 293 WGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELR 352
WG+ KE + E V++ K KV+DF+G+S+ + S + ++PD +AH+L+
Sbjct: 346 WGNIA-KEFDSVPE-------SVVAFKGVKVSDFNGRSLSLLSSGSMTVDPDIEDAHKLK 397
Query: 353 EWFDSGGKNAATVSI-SREIAAG-GAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFI 410
W+D+ G++ S S AAG G + KT+ Q+ LG SEKPD+ +V+A + ++
Sbjct: 398 GWYDAQGRSETFASHDSMNNAAGFGDRASSFKTIVQVHEGNLGMSEKPDYFSVKATVVYV 457
Query: 411 KSDSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQTGLT 469
K D+ Y AC + D+ CNKKV Q N +W+C+RC+Q +YRY+L + D TG
Sbjct: 458 KQDTMAYPAC---LTDK-CNKKVLQDENGQWRCERCDQSFPHPEYRYILSVNVCDHTGAL 513
Query: 470 WVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQ 529
W++ F E G+ ILG A EL LK D+ + E+++ + F + K + + D+Q
Sbjct: 514 WLSCFDEVGKIILGTSANELMELKE--NDERAYEELVQRANCRAWNFNCRAKMDNFQDQQ 571
Query: 530 RVKITVIRADQVNYSSESRYLLDLI 554
RV+ V ++YS ES L +LI
Sbjct: 572 RVRYQVSSVSAIDYSVESARLAELI 596
>gi|345565697|gb|EGX48646.1| hypothetical protein AOL_s00080g275 [Arthrobotrys oligospora ATCC
24927]
Length = 606
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 148/446 (33%), Positives = 262/446 (58%), Gaps = 21/446 (4%)
Query: 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
A I I +L+PYQ RW IKAR +G+++ + NA+GDGK+F+ D EI+ T F
Sbjct: 173 AGISLIESLSPYQNRWTIKARCIHRGEIKNWKNAKGDGKLFAVSFKDQ-SAEIKATGFGD 231
Query: 173 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQ 232
VD Y + E G VYLISK ++ A++ F+++ N++E+ + S V ++D+ +P+QQ
Sbjct: 232 QVDSLYHVFEEGSVYLISKCKVQIAKRQFSNIDNDYELVFDRDSEVQKV-DDDEGVPQQQ 290
Query: 233 FSFRHISEIESAENNSIVDVIGIVISVNPSVPILR-KNGMETQRRILNLKDTSGRSVELT 291
++F + ++++ E ++ +DVIGI+ V S I+ K +R L+L D +G +V+LT
Sbjct: 291 YNFVTLQDLQNTEKDAQIDVIGILKEVGESDSIVSAKTQKAFTKRDLHLVDDTGYTVKLT 350
Query: 292 LWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHEL 351
+WG K +K + M + VL+VK KV+DF G+S+ S+ + ++PD EAH L
Sbjct: 351 VWG----KSAEKFEIMPE----SVLAVKGVKVSDFGGRSLSMQNSSTMQVDPDLEEAHRL 402
Query: 352 REWFDSGGKNAATVSISREIAAGGA---KNEIHKTVSQIKNEGLGRSEKPDWVTVRAFIT 408
+ WF S G++ + + ++ GGA + + KTV Q +E +G E D+ T++A I+
Sbjct: 403 KGWFSSEGRDT-NFNSHKGLSTGGADGNRPSVFKTVQQASDENIGFGETADFYTLKATIS 461
Query: 409 FIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGL 468
+IK++ Y AC C+KKV + W+C++C+ E +YRY+L D TG
Sbjct: 462 YIKNEGHSYPACKT----EGCSKKVVEFNGSWRCEKCSVNWPEPEYRYILTCSAYDHTGQ 517
Query: 469 TWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDE 528
TW+ F ++G+ I+G A +L+ + + D+ + ++ ++FR++ ++E+Y D
Sbjct: 518 TWLNIFDDAGKVIMGTTASDLHAM--QDYDESSYEATMKKAASQTWMFRIRAQQEVYQDV 575
Query: 529 QRVKITVIRADQVNYSSESRYLLDLI 554
RV+ V+ A +++Y++E+ L+++I
Sbjct: 576 PRVRNRVLSAQKIDYAAEATRLINMI 601
>gi|171691865|ref|XP_001910857.1| hypothetical protein [Podospora anserina S mat+]
gi|170945881|emb|CAP72682.1| unnamed protein product [Podospora anserina S mat+]
Length = 630
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 160/457 (35%), Positives = 263/457 (57%), Gaps = 33/457 (7%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
I PI AL+PY +W IKAR+T K D++ ++ G+GK+FS +LLD + EI+ T FN V
Sbjct: 185 IYPIEALSPYAHKWTIKARLTHKSDIKTWHKNNGEGKLFSVNLLD-ESSEIKATMFNDQV 243
Query: 175 DRFYEIIEVGRVYLISK-GSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQF 233
D+FY++++ G+VY IS ++ A+K F++L N++E+ E + V+ E+ S+P+ +F
Sbjct: 244 DQFYDVLQEGQVYYISAPCRVQLAKKQFSNLPNDYELTFERDTVVEK-AEDQSSVPQVRF 302
Query: 234 SFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGME-TQRRILNLKDTSGRSVELTL 292
+F +I E++S E ++ VDV+G++ +V+ I K+ + +R L L D +G SV +T+
Sbjct: 303 NFCNIQELQSVEKDATVDVLGVLKTVHEVSSITSKSTQKPYDKRELELVDQTGYSVRVTV 362
Query: 293 WGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELR 352
WG + K +E V++ K +V+DF+G+S+ + S + I+PD EAH L+
Sbjct: 363 WGKTATEFQGKPEE--------VIAFKGTRVSDFNGRSLSLLSSGTMAIDPDIPEAHALK 414
Query: 353 EWFDSGGKN---AATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITF 409
W+DS G++ A ++S AA G NEI + Q+K + +G +KP++ +V+A I
Sbjct: 415 GWYDSTGRHSDFATHSNMSSVGAASGRTNEI-LMIQQVKEKDVG-FDKPEYFSVQATIVH 472
Query: 410 IKSDSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQTGL 468
+K D+FCY AC CNKKVT G+ W+C++C+ D +YRY+L D TG
Sbjct: 473 VKQDNFCYPACR----SEGCNKKVTDMGDGTWRCEKCDVTHDRPEYRYILNFNCSDHTGQ 528
Query: 469 TWVTAFQESGEEILGCPAKELYMLK-----------YELQDDVRFGEIIRSRVFNQYLFR 517
W++ F E G ++LG A EL K + +VRF S + FR
Sbjct: 529 IWLSCFDEQGRKLLGASADELMEWKQIKESGDASDEARKEAEVRFTTAFDSANCRKMTFR 588
Query: 518 LKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLI 554
+ K + YG++QRV+ ++ A ++Y E L ++I
Sbjct: 589 ARAKMDTYGEQQRVRYQLMEATPLDYKMEGNRLAEMI 625
>gi|85102469|ref|XP_961333.1| replication factor-A protein 1 [Neurospora crassa OR74A]
gi|18376393|emb|CAD21282.1| probable single-stranded DNA-binding protein 68k chain [Neurospora
crassa]
gi|28922877|gb|EAA32097.1| replication factor-A protein 1 [Neurospora crassa OR74A]
gi|336473157|gb|EGO61317.1| hypothetical protein NEUTE1DRAFT_144541 [Neurospora tetrasperma
FGSC 2508]
gi|350293584|gb|EGZ74669.1| putative single-stranded DNA-binding protein 68k chain [Neurospora
tetrasperma FGSC 2509]
Length = 610
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 158/487 (32%), Positives = 263/487 (54%), Gaps = 25/487 (5%)
Query: 77 PNAGSIVRSFQPTVQPPYQPPPNFRNHGP---ILKNEAPARIIPIAALNPYQGRWAIKAR 133
PN GS + +P P F P + + I PI L+P+ +W IKAR
Sbjct: 134 PNLGS-TGFYGVKSEPTQDTKPQFPRQMPSRNASGGQGSSTIYPIEGLSPFSHKWTIKAR 192
Query: 134 VTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISK-G 192
VT+K D++ ++ A G+GK+FS + LD + GEIR T FN VD+FY++++ G+VY IS
Sbjct: 193 VTSKSDIKTWHKASGEGKLFSVNFLD-ESGEIRATGFNDQVDQFYDLLQEGQVYYISTPC 251
Query: 193 SLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDV 252
++ A+K +++L N++E+ E + ++ E+ S+P+ +F+F +I E++ E ++ VD+
Sbjct: 252 RVQLAKKQWSNLPNDYELTFERDTVIEK-AEDQTSVPQVRFNFVNIQELQDVERDATVDI 310
Query: 253 IGIVISVNPSVPILRKNGMET-QRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVG 311
IG++ V I+ K + +R L L D +G SV T+WG K D
Sbjct: 311 IGVLKEVQEVTQIVSKTTQKPYDKRELTLVDNTGYSVRCTIWG--------KTATNFDAQ 362
Query: 312 FFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREI 371
+++ K KV+DF G+S+ + S + I+PD EAH L+ W+DS G+N + +
Sbjct: 363 PESIVAFKGTKVSDFGGRSLSLLSSGTMAIDPDIPEAHHLKGWYDSSGRNNTFATHNNMQ 422
Query: 372 AAGGA--KNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQC 429
GGA + + KT+SQ+K E LG +E PD+ ++A + FIK D+F Y C C
Sbjct: 423 TLGGATGRKDDAKTISQVKEENLGTNEAPDYFALKATVVFIKQDNFAYPGCR----SEGC 478
Query: 430 NKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKE 488
N+KVT G+ W+C++C D YRY++ + D TG W++ F ++ I+G A E
Sbjct: 479 NRKVTDMGDGTWRCEKCQINHDRPQYRYIMSVNVNDHTGQLWLSCFDDTARVIMGKSADE 538
Query: 489 LYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESR 548
L ++ D+ R + FR + K + +G++QR++ V+ ++Y E
Sbjct: 539 LMEIRET--DETRLPAEFEQANCRKLNFRCRAKMDTFGEQQRIRYQVMSVAPLDYKMEGN 596
Query: 549 YLLDLIS 555
L +LI+
Sbjct: 597 KLNELIN 603
>gi|380486564|emb|CCF38620.1| replication factor-a protein 1 [Colletotrichum higginsianum]
Length = 607
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 156/469 (33%), Positives = 266/469 (56%), Gaps = 23/469 (4%)
Query: 93 PYQPPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKV 152
P Q P+ R+ G + I PI AL+PY +W IKARVT K D+R ++ G+GK+
Sbjct: 152 PQQSIPS-RSAGGATGQHGSSNIYPIEALSPYAHKWTIKARVTQKSDIRTWHKPSGEGKL 210
Query: 153 FSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISK-GSLKPAQKNFNHLKNEWEIF 211
FS +LLD + GEI+ T FN VD++Y++++ G VY IS ++ A+K F +L N++E+
Sbjct: 211 FSVNLLD-ESGEIKATGFNEQVDQYYDLLQEGGVYYISSPCKVQLAKKQFTNLPNDYELT 269
Query: 212 LEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKN-G 270
E + ++ E+ ++P+ +F+F +I E++ E ++ VD+IG++ V+ I+ K+ G
Sbjct: 270 FERDTQIEK-AEDQSNVPQVRFNFCNIQELQEVEKDATVDIIGVLKDVDEVSQIVSKSTG 328
Query: 271 METQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKS 330
++R L L D + SV +T+WG K D V++ K KV+DF G+S
Sbjct: 329 KPYEKRELTLVDDTNYSVRVTIWG--------KSATNFDAKPESVVAFKGTKVSDFGGRS 380
Query: 331 IGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGA--KNEIHKTVSQIK 388
+ + S + I+PD +AH L+ W+DS G+N + + ++ G A + + K++ Q+K
Sbjct: 381 LSLLSSGTMSIDPDIPDAHRLKGWYDSSGRNDTFSNHNNMVSMGNATGRKDQDKSILQVK 440
Query: 389 NEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSG-NRWQCDRCNQ 447
E LG E+ D+ ++A I +IK D+F Y AC + CNKKVT++G W+C++C+
Sbjct: 441 EENLGM-EQQDYFNLKATIVYIKQDNFAYPACM----NEGCNKKVTETGEGAWRCEKCDV 495
Query: 448 EIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIR 507
+ +YRY++ + D T W++ F + G I+G A +L L+ E D+ + +
Sbjct: 496 SHPKPEYRYIMSVNVCDHTNQLWLSCFDDVGRVIMGMSADQLTNLREE--DETKMAQAFE 553
Query: 508 SRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
+ FR + K + +G+ QRV+ V+ A ++Y +E L DLI +
Sbjct: 554 DANCRKLNFRCRAKMDTFGESQRVRYQVMSASPIDYKAEGAKLADLIKQ 602
>gi|295674419|ref|XP_002797755.1| replication factor-A protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226280405|gb|EEH35971.1| replication factor-A protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 603
Score = 272 bits (695), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 159/450 (35%), Positives = 265/450 (58%), Gaps = 22/450 (4%)
Query: 111 APARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCF 170
A A I PI AL+PY +W IKAR T K +++ ++N G+G++FS +LLD D GEIR T F
Sbjct: 164 AYANIYPIEALSPYSHKWTIKARCTNKSEIKTWHNKNGEGRLFSVNLLD-DSGEIRATAF 222
Query: 171 NAVVDRFYEIIEVGRVYLISK-GSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIP 229
D Y + E G VY IS ++ A+K F++L NE+E+ E + V+ E++D +P
Sbjct: 223 KDQCDALYGVFEEGSVYYISSPCRVQIAKKAFSNLNNEYELTFEKDTVVEKAEEQND-VP 281
Query: 230 KQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGME-TQRRILNLKDTSGRSV 288
+ +F+F +I+ +++ E + +DVIG++ V S IL K + +R L L D +G SV
Sbjct: 282 QIRFNFTNIANLQTIEPGTTIDVIGVLKDVGESSQILSKTTSKPYDKRDLTLVDNTGYSV 341
Query: 289 ELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEA 348
LT+WG+ K+ + E V++ K KV+DF G+S+ + S + ++PD +A
Sbjct: 342 RLTVWGN-AAKDFDSMPE-------SVVAFKGVKVSDFGGRSLSLLSSGSMTVDPDIEDA 393
Query: 349 HELREWFDSGGKN---AATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRA 405
H+L+ W+++ G++ A+ SIS + +G + KT++Q++ E LG SEKPD+ +++A
Sbjct: 394 HKLKGWYEAQGRSETFASHESISGAVGSGDRRANSFKTIAQVQEENLGMSEKPDYFSLKA 453
Query: 406 FITFIKSDSFCYTACPLMIGDRQCNKKVTQS-GNRWQCDRCNQEIDECDYRYLLQAQIQD 464
+ ++K D+ Y AC + D+ CNKKV Q RW+C+RC+Q +YRY+L + D
Sbjct: 454 TVVYVKQDTMAYPAC---LTDK-CNKKVLQDETGRWRCERCDQSFPRPEYRYILSVNVCD 509
Query: 465 QTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEEL 524
TG W++ F E G+ +LG A E+ LK D+ + E+++ + F + K +
Sbjct: 510 HTGALWLSCFDEVGKALLGISANEIMELKD--NDERAYEELVQKANCRAWNFNCRAKMDS 567
Query: 525 YGDEQRVKITVIRADQVNYSSESRYLLDLI 554
+ ++QRV+ V ++Y++ES L +LI
Sbjct: 568 FQEQQRVRYQVSSVSPIDYTTESVRLAELI 597
>gi|67900872|ref|XP_680692.1| hypothetical protein AN7423.2 [Aspergillus nidulans FGSC A4]
gi|40742813|gb|EAA62003.1| hypothetical protein AN7423.2 [Aspergillus nidulans FGSC A4]
Length = 606
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 161/458 (35%), Positives = 258/458 (56%), Gaps = 24/458 (5%)
Query: 103 HGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDG 162
H ++ APA I PI A++PY +W IKAR T+K ++ ++ GDG +FS +LLD D
Sbjct: 161 HTRPMQGSAPATIYPIEAISPYAHKWTIKARCTSKSPIKTFHGRSGDGTLFSVNLLD-DS 219
Query: 163 GEIRVTCFNAVVDRFYEIIEVGRVYLISKGS-LKPAQKNFNHLKNEWEIFLEATSTVDLC 221
GEIR T FN Y++ + G VY IS ++ A+K F +L N++E+ E + V+
Sbjct: 220 GEIRATGFNEQCSALYDLFQEGEVYYISSPCRVQIAKKQFTNLNNDYELTFERDTLVEKA 279
Query: 222 TEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMET-QRRILNL 280
E++D +P+ +F+F I +++S E ++ +DVIG++ V + I+ K + +R L L
Sbjct: 280 EEQND-VPQVRFNFTTIGDLQSVEKDTTIDVIGVLKDVGETTQIVSKTTKKPYDKRELTL 338
Query: 281 KDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFP--VLSVKSGKVNDFSGKSIGTIPSTQ 338
D +G SV LT+WG ++ P V++ K KV+DF GKS+ + S
Sbjct: 339 VDNTGFSVRLTIWG----------TTAMNFAASPESVVAFKGVKVSDFGGKSLSLLSSGS 388
Query: 339 LFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGA-KNEIHKTVSQIKNEGLGRSEK 397
+ ++PD EAH L+ W+D+ G+N S + + A K + KT++Q++ E LG SE+
Sbjct: 389 VTVDPDIEEAHRLKGWYDAQGRNENFASHASSVGTMSATKRDQLKTIAQVREEQLGMSEE 448
Query: 398 PDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQ-SGNRWQCDRCNQEIDECDYRY 456
P + T+RA + +IK D+ CY AC L G CNKKVT+ +W+C+RC++ +YRY
Sbjct: 449 PSYFTLRATVVYIKQDNLCYPAC-LSEG---CNKKVTEVDPGQWRCERCDKTHPRAEYRY 504
Query: 457 LLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLF 516
++ + D TG ++ F + G +LG A +L L D G +I++ + F
Sbjct: 505 IMLVNVSDHTGQLYLNCFDDVGRLLLGMSANQLMELPQ--NDGKALGNVIQNATCRTWTF 562
Query: 517 RLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLI 554
+ K + YGD+QR++ V A VNYS E+ L D+I
Sbjct: 563 GCRAKIDHYGDQQRIRYQVSYAKPVNYSEEASRLADII 600
>gi|259483725|tpe|CBF79351.1| TPA: subunit of heterotrimeric Replication Factor (Eurofung)
[Aspergillus nidulans FGSC A4]
Length = 603
Score = 271 bits (694), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 161/458 (35%), Positives = 258/458 (56%), Gaps = 24/458 (5%)
Query: 103 HGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDG 162
H ++ APA I PI A++PY +W IKAR T+K ++ ++ GDG +FS +LLD D
Sbjct: 158 HTRPMQGSAPATIYPIEAISPYAHKWTIKARCTSKSPIKTFHGRSGDGTLFSVNLLD-DS 216
Query: 163 GEIRVTCFNAVVDRFYEIIEVGRVYLISKGS-LKPAQKNFNHLKNEWEIFLEATSTVDLC 221
GEIR T FN Y++ + G VY IS ++ A+K F +L N++E+ E + V+
Sbjct: 217 GEIRATGFNEQCSALYDLFQEGEVYYISSPCRVQIAKKQFTNLNNDYELTFERDTLVEKA 276
Query: 222 TEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGME-TQRRILNL 280
E++D +P+ +F+F I +++S E ++ +DVIG++ V + I+ K + +R L L
Sbjct: 277 EEQND-VPQVRFNFTTIGDLQSVEKDTTIDVIGVLKDVGETTQIVSKTTKKPYDKRELTL 335
Query: 281 KDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFP--VLSVKSGKVNDFSGKSIGTIPSTQ 338
D +G SV LT+WG ++ P V++ K KV+DF GKS+ + S
Sbjct: 336 VDNTGFSVRLTIWG----------TTAMNFAASPESVVAFKGVKVSDFGGKSLSLLSSGS 385
Query: 339 LFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGA-KNEIHKTVSQIKNEGLGRSEK 397
+ ++PD EAH L+ W+D+ G+N S + + A K + KT++Q++ E LG SE+
Sbjct: 386 VTVDPDIEEAHRLKGWYDAQGRNENFASHASSVGTMSATKRDQLKTIAQVREEQLGMSEE 445
Query: 398 PDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQ-SGNRWQCDRCNQEIDECDYRY 456
P + T+RA + +IK D+ CY AC L G CNKKVT+ +W+C+RC++ +YRY
Sbjct: 446 PSYFTLRATVVYIKQDNLCYPAC-LSEG---CNKKVTEVDPGQWRCERCDKTHPRAEYRY 501
Query: 457 LLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLF 516
++ + D TG ++ F + G +LG A +L L D G +I++ + F
Sbjct: 502 IMLVNVSDHTGQLYLNCFDDVGRLLLGMSANQLMELPQ--NDGKALGNVIQNATCRTWTF 559
Query: 517 RLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLI 554
+ K + YGD+QR++ V A VNYS E+ L D+I
Sbjct: 560 GCRAKIDHYGDQQRIRYQVSYAKPVNYSEEASRLADII 597
>gi|429855381|gb|ELA30339.1| replication factor-a protein 1 [Colletotrichum gloeosporioides Nara
gc5]
Length = 607
Score = 271 bits (694), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 167/517 (32%), Positives = 278/517 (53%), Gaps = 34/517 (6%)
Query: 52 LQNSGTFNSQNPGSFSTPNSGTFRAPNAGSIV---RSFQPTVQPPYQPPPN----FRNHG 104
++N GT P P + +AP A + ++F Q +P P R G
Sbjct: 108 IENLGT-----PDKIGEPQAFEAKAPPAANTTIGGQNFYGVKQEETKPKPQQSIPTRTAG 162
Query: 105 PILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGE 164
I PI AL+PY +W IKARVT K D+R ++ G+GK+FS +LLD + GE
Sbjct: 163 GASGQHGSNNIYPIEALSPYAHKWTIKARVTQKSDIRTWHKPSGEGKLFSVNLLD-ESGE 221
Query: 165 IRVTCFNAVVDRFYEIIEVGRVYLISK-GSLKPAQKNFNHLKNEWEIFLEATSTVDLCTE 223
I+ T FN VD++Y++++ G VY IS ++ A+K F +L N++E+ E + ++ E
Sbjct: 222 IKATGFNEQVDQYYDLLQEGSVYYISNPCKVQLAKKQFTNLPNDYELTFERDTLIEK-AE 280
Query: 224 EDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKN-GMETQRRILNLKD 282
+ ++P+ +F+F +I E++ E ++ VDVIG++ V I+ K+ G ++R L L D
Sbjct: 281 DQSNVPQVRFNFCNIQELQEVEKDATVDVIGVLKDVAEVSQIVSKSTGKPYEKRELTLVD 340
Query: 283 TSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFIN 342
+ SV +T+WG K DV V++ K KV+DF G+S+ + S + I+
Sbjct: 341 DTNYSVRVTIWG--------KSATGFDVKPESVVAFKGVKVSDFGGRSLSLLSSGTMSID 392
Query: 343 PDFAEAHELREWFDSGGKNAATVSISREIAAGGA--KNEIHKTVSQIKNEGLGRSEKPDW 400
PD EAH L+ W+DS G+N A + + + G A + + K++ Q+K E LG E+ D+
Sbjct: 393 PDITEAHRLKGWYDSSGRNDAFNTHNNMASMGNATGRKDQDKSIVQVKEENLGM-EQQDY 451
Query: 401 VTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQ 459
++A I +IK D+F Y AC C+KKVT G+ W+C++C+ +YRY++
Sbjct: 452 FNLKATIVYIKQDNFAYPACM----SEGCSKKVTDMGDGTWRCEKCDISHPRPEYRYIMS 507
Query: 460 AQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLK 519
+ D T W++ F + G ++G A +L L+ + D+ + + + FR +
Sbjct: 508 VNVCDHTNQLWLSCFDDVGRIVMGMSADDLMALRED--DETKLAQAFEEANCRKLNFRCR 565
Query: 520 IKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
K + +G+ QRV+ V+ A Q+++ SE L DLI +
Sbjct: 566 AKMDTFGESQRVRYQVMSATQIDFKSEGAKLADLIKQ 602
>gi|358334004|dbj|GAA32083.2| replication factor A1 [Clonorchis sinensis]
Length = 551
Score = 271 bits (693), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 162/476 (34%), Positives = 265/476 (55%), Gaps = 30/476 (6%)
Query: 96 PPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSF 155
P P P ++ PI +LNPYQ RW ++ARV+ K +R +N DGK+F+F
Sbjct: 75 PFPGGHPSTPGTPGSGMPKVFPIQSLNPYQNRWTVRARVSQKSSIRTWNKQGRDGKLFNF 134
Query: 156 DLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEAT 215
L+D + GEIRVT FNA VD+F+++IEV + Y +++ +LK A K FN N++E+ L A
Sbjct: 135 TLVD-ESGEIRVTAFNAEVDKFFDMIEVNKAYYVTRANLKAANKQFNTTNNDYEMTLNAD 193
Query: 216 STVDLCTEED-DSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGM-ET 273
S + C +ED ++P+ F+F I ++++ E S VDV+G+V + I+ K E
Sbjct: 194 SQIIPCEDEDITALPETHFNFVSIGKLDTCEPGSFVDVVGVVHDTSEVQTIMAKASQREL 253
Query: 274 QRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGT 333
++R L L D+S V LTLWGD D PV+ VK KV+DF+G+S+
Sbjct: 254 RKRELGLVDSSRCLVRLTLWGDEAAS--------FDGSQHPVIVVKGAKVSDFNGRSLSV 305
Query: 334 IPSTQLFINP-DFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIH----------- 381
++ + ++P + EA L+ W++ G + + E+ G+ ++
Sbjct: 306 SSTSSVLVSPTNVPEAIRLKGWYELEGHKVSFDTYKSEMLGSGSGGDLAGPGSTAGCLGG 365
Query: 382 -KTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGN-R 439
+ +K G+G K D+ T ++ + F+K ++F Y ACP CNKKV +G+
Sbjct: 366 WNLIQDVKASGVGTHAKADFFTCKSTVVFLKKENFMYQACPT----EGCNKKVIDTGHGM 421
Query: 440 WQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDD 499
++C++C +E + C +R LL A+I D TG W+T FQE+ E++LG A L +K E QD+
Sbjct: 422 YRCEKCGRETNHCKWRLLLAAKIADLTGDLWITCFQEAAEQLLGQSADSLGAMK-ESQDE 480
Query: 500 VRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLIS 555
+ I + VFN ++FRL+ K + Y DE+R+++ V+ +++ +R LL I+
Sbjct: 481 AQLERIFLNAVFNSWVFRLRAKVDRYNDEERLRVVVVEVRPLDHVDHARRLLKAIT 536
>gi|347441232|emb|CCD34153.1| similar to replication protein A 70 kDa DNA-binding subunit
[Botryotinia fuckeliana]
Length = 609
Score = 271 bits (693), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 172/475 (36%), Positives = 269/475 (56%), Gaps = 29/475 (6%)
Query: 87 QPTVQPPYQPPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNA 146
QP Q P N GP + + A I PI +L+PY +W IKARVT+K D+R ++
Sbjct: 151 QPAAQDRALPSRN----GP-SSSSSHATIYPIESLSPYAHKWTIKARVTSKSDIRTWSKP 205
Query: 147 RGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLI-SKGSLKPAQKNFNHLK 205
+GK+FS +LLD + GEI+ T FN D YE + G VY I S ++ A+K F+++
Sbjct: 206 NSEGKLFSVNLLD-ESGEIKATGFNEQCDALYETFQEGSVYYITSPCRVQIAKKQFSNIN 264
Query: 206 NEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPI 265
N++E+ E + V+ E+ D++P+ +++F +I +++S E +S VD+I ++ V I
Sbjct: 265 NDYELMFERDTLVEKA-EDQDNVPQVRYNFSNIGDLQSIEKDSTVDLIAVLKEVGEISEI 323
Query: 266 LRKNGME-TQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVN 324
K + +R L L D +G SV LT+WG K D V++ K KV+
Sbjct: 324 TSKTTSKPYSKRELTLVDETGYSVRLTIWG--------KTATSFDASPESVVAFKGVKVS 375
Query: 325 DFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKN---AATVSISREIAAGGAKNEIH 381
DF G+S+ + S + +PD EAH+L+ W+DS G+ A+ +++ AAGG ++ I
Sbjct: 376 DFGGRSLSLLSSGSMSFDPDIQEAHKLKGWYDSQGRTSNFASHSNLASAGAAGGRQDPI- 434
Query: 382 KTVSQIKNEGLGRSEK-PDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNR 439
KT++Q+K+EGLG SE+ D+ + RA I +IK D+FCY AC + CNKKV Q+
Sbjct: 435 KTIAQVKDEGLGMSEENTDYFSSRATIVYIKQDNFCYPACL----NENCNKKVVDQNDGT 490
Query: 440 WQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDD 499
W+C++CNQ + +YRY+L + D TG W+TAF E G I+G A EL LK D
Sbjct: 491 WRCEKCNQSHPKPEYRYILALNVNDHTGQMWLTAFDEVGRLIMGKSADELMELKE--NDP 548
Query: 500 VRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLI 554
+ F+++ K + Y D+ RV+ +V+ A VNY++++ L +LI
Sbjct: 549 PAMERVFEDANCKMMTFKVRCKTDTYQDQARVRYSVMSALAVNYAADALKLAELI 603
>gi|406860812|gb|EKD13869.1| replication factor-a protein 1 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 611
Score = 271 bits (693), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 155/449 (34%), Positives = 253/449 (56%), Gaps = 25/449 (5%)
Query: 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
A I PI L+PY +W IKARVT K D++ ++ +GK+FS +LLD + GEI+ T FN
Sbjct: 175 ATIYPIEGLSPYAHKWTIKARVTQKSDIKTWHKPSSEGKLFSVNLLD-ETGEIKATGFND 233
Query: 173 VVDRFYEIIEVGRVYLISK-GSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQ 231
D+ YE+ + G VY IS ++ A+K F++L N++E+ E + V+ ++ D +P+
Sbjct: 234 QCDQLYELFQEGAVYYISSPCKVQLAKKQFSNLSNDYELTFERDTVVEKAEDQAD-VPQI 292
Query: 232 QFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMET-QRRILNLKDTSGRSVEL 290
+++F I E+++ E +S++D+IG++ V I+ K + +R L L D S SV L
Sbjct: 293 RYNFTGIGELQNIEKDSMIDIIGVLKEVADVNQIVSKTTQKPFDKRELTLVDESDFSVRL 352
Query: 291 TLWGDFCNKEGQKLQEMVDVGFFP--VLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEA 348
T+WG + V P +++ K KV+DF G+S+ + S + INPD +EA
Sbjct: 353 TIWG----------KSAVSFDAIPESIIAFKGAKVSDFGGRSLSLLSSGTMAINPDISEA 402
Query: 349 HELREWFDSGGKNAATVSISREIAAG--GAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAF 406
H+LR W+DS G+ S AG G +++ KT++Q++ E LG SE+PD+ +V+A
Sbjct: 403 HKLRGWYDSQGRMNTFQSHQNMSGAGAAGGRSDPLKTIAQVREENLGMSEQPDYFSVKAT 462
Query: 407 ITFIKSDSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQ 465
I +IK D+F Y AC + CNKKV G+ WQC++CN + +YRY++ + D
Sbjct: 463 IVYIKQDNFAYPACL----NDGCNKKVIDMGDGSWQCEKCNVSHPKPEYRYIMSLNVNDY 518
Query: 466 TGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELY 525
TG W+ F + G ++G +L L+ D + + Y+F+ + K + +
Sbjct: 519 TGQLWLNCFDDVGRLVMGHSGDQLMELRE--NDTAAMEKAFETSNCTTYIFKCRAKMDNF 576
Query: 526 GDEQRVKITVIRADQVNYSSESRYLLDLI 554
D+ RV+ V+ A VN+ E++ L DLI
Sbjct: 577 QDQTRVRYQVMNASPVNFVQEAKKLADLI 605
>gi|325187250|emb|CCA21790.1| replication protein A 70 kDa DNAbinding subunit puta [Albugo
laibachii Nc14]
Length = 612
Score = 271 bits (692), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 173/526 (32%), Positives = 276/526 (52%), Gaps = 37/526 (7%)
Query: 52 LQNSGTFNSQNPGSFSTPNSG-------TFRAPNAGSI-----VRSFQPTVQPPYQPPPN 99
+ N + S N G STP+ G + +P+ S+ R+ + +
Sbjct: 99 IGNPQSIESINAGRASTPSLGVPVPKPLSIPSPSVQSLSINQLTRTEMTSSTHAVDGQSS 158
Query: 100 FRNH-GPILKNEAPARIIPIAALNPYQG-RWAIKARVTAKGDLRRYNNARGDGKVFSFDL 157
NH G +++ + R+ I +LNPY G RW IKARVT + ++ + NARG GK+FS DL
Sbjct: 159 ISNHKGSVVREDPNIRLSDIQSLNPYAGGRWTIKARVTNRAPIKNWTNARGQGKLFSIDL 218
Query: 158 LDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATST 217
LDS GGEIR T FN VD+FY+++ G+V+ S G ++ A + F+ + N++EI + S
Sbjct: 219 LDSKGGEIRATMFNDAVDKFYDVLRPGQVFYFSGGKIRMANRKFSSVNNDYEITFDQHSE 278
Query: 218 VDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRI 277
+ L + +D I + ++F+ I +E ++ +DVIG+V V P I+ K G + +R
Sbjct: 279 ISLAS-DDRGIQQMNYNFKKIGTLEKLPADANIDVIGVVKQVEPMSEIISKAGKQLFKRD 337
Query: 278 LNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPST 337
L L D S V +TLW ++ QE VL++K ++++++G+SIGT+ S+
Sbjct: 338 LVLVDDSMAEVRVTLW-------NERAQEDCSSWTNNVLAIKGCRISEYNGRSIGTLSSS 390
Query: 338 QLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEI----HKTVSQIKNEGLG 393
+NP EA L W+++GG + T S+S + G + + IK LG
Sbjct: 391 SFNVNPTIPEAGFLLSWYNNGGSTSETTSLSVGSSGFGGGSLGSFAERANLMDIKARQLG 450
Query: 394 RSEKPDWVTVRAFITFIKSDS-FCYTACPLMIGDRQCNKKVTQS-GNRWQCDRCNQEIDE 451
+KPD++TV+ + +IK DS Y AC +CNKKV + C++C
Sbjct: 451 FDQKPDYITVKGTVNYIKHDSGLYYQACT------KCNKKVIADVAQNYSCEKCQTVYKT 504
Query: 452 CDYRYLLQAQIQDQTGLTWVTAFQESGEEILGC-PAKELYMLKYELQDDVRFGEIIRSRV 510
C+ RY++ I D TG +WVT F + G IL A E+ +K + F + + +
Sbjct: 505 CENRYIMSLVIADHTGSSWVTCFNDQGRVILNKRTADEIAEIKD--TNTALFEAVFKEAL 562
Query: 511 FNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
F Y++RL+IK E E RVK+ V+ + ++Y ES+ LL ISK
Sbjct: 563 FKSYVWRLRIKAENVQGESRVKVNVVNLEPIDYVKESKDLLHAISK 608
>gi|225678017|gb|EEH16301.1| replication protein A 70 kDa DNA-binding subunit [Paracoccidioides
brasiliensis Pb03]
gi|226287502|gb|EEH43015.1| replication factor-A protein [Paracoccidioides brasiliensis Pb18]
Length = 603
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 161/455 (35%), Positives = 267/455 (58%), Gaps = 23/455 (5%)
Query: 111 APARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCF 170
A A I PI AL+PY +W IKAR T K +++ ++N G+G++FS +LLD D GEIR T F
Sbjct: 164 AYANIYPIEALSPYSHKWTIKARCTNKSEIKTWHNKNGEGRLFSVNLLD-DSGEIRATAF 222
Query: 171 NAVVDRFYEIIEVGRVYLISKGS-LKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIP 229
D Y + E G VY IS ++ A+K F +L NE+E+ E + V+ E++D +P
Sbjct: 223 KDQCDALYGVFEEGSVYYISSPCRVQIAKKAFTNLNNEYELTFEKDTVVEKAEEQND-VP 281
Query: 230 KQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGME-TQRRILNLKDTSGRSV 288
+ +F+F +I+ +++ E + +DVIG++ V + IL K + +R L L D +G SV
Sbjct: 282 QIRFNFTNIANLQTIEPGTTIDVIGVLKDVGEASQILSKTTSKPYDKRDLTLVDNTGYSV 341
Query: 289 ELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEA 348
LT+WG+ K+ + E V++ K KV+DF G+S+ + S + ++PD +A
Sbjct: 342 RLTVWGN-AAKDFDSMPE-------SVVAFKGVKVSDFGGRSLSLLSSGSMTVDPDIEDA 393
Query: 349 HELREWFDSGGKN---AATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRA 405
H+L+ W+++ G++ A+ SIS + AG + KT++Q++ E LG SEKPD+ +++A
Sbjct: 394 HKLKGWYEAQGRSETFASHESISGAVGAGDRRANSFKTIAQVQEENLGMSEKPDYFSLKA 453
Query: 406 FITFIKSDSFCYTACPLMIGDRQCNKKVTQS-GNRWQCDRCNQEIDECDYRYLLQAQIQD 464
+ ++K D+ Y AC + D+ CNKKV Q RW+C+RC+Q +YRY+L + D
Sbjct: 454 TVVYVKQDTMAYPAC---LTDK-CNKKVLQDETGRWRCERCDQSFPRPEYRYILSVNVCD 509
Query: 465 QTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEEL 524
TG W++ F E G+ +LG A E+ LK D+ E+++ + F + K +
Sbjct: 510 HTGALWLSCFDEVGKALLGISANEIMELKD--NDERAHEELVQKANCRAWNFNCRAKMDS 567
Query: 525 YGDEQRVKITVIRADQVNYSSESRYLLDLISKSFR 559
+ ++QRV+ V ++Y++ES L +LI KS++
Sbjct: 568 FQEQQRVRYQVSSVSPIDYTTESVRLAELI-KSYQ 601
>gi|241950583|ref|XP_002418014.1| replication factor-A protein 1, putative [Candida dubliniensis
CD36]
gi|223641353|emb|CAX43313.1| replication factor-A protein 1, putative [Candida dubliniensis
CD36]
Length = 623
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 147/453 (32%), Positives = 260/453 (57%), Gaps = 31/453 (6%)
Query: 114 RIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAV 173
++ PI ++PYQ W IKARV+ KGDLR ++N++G+GKVF F+LLD + EI+ + FN
Sbjct: 179 KVSPIETISPYQNNWTIKARVSYKGDLRTWSNSKGEGKVFGFNLLD-ESDEIKASAFNET 237
Query: 174 VDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQF 233
++ ++++E G+VY ISK + A+K FN L + +E+ + + + C +E D +PK F
Sbjct: 238 AEKAHKLLEEGKVYYISKARVAAARKKFNTLSHPYELTFDKDTEITECFDESD-VPKLNF 296
Query: 234 SFRHISEIESAENNSIVDVIGIVISVNPSVPILRKN-GMETQRRILNLKDTSGRSVELTL 292
+F + +I++ E NSI+DV+G + +V P I K+ G RR + + D +G VEL L
Sbjct: 297 NFVKLDQIQNLEANSIIDVLGALKTVYPPFQITAKSTGRVFDRRNILVVDETGFGVELGL 356
Query: 293 WG----DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEA 348
W DF +EG V++VK KV+DF G+++ + + NP E+
Sbjct: 357 WNNTATDFDVEEGT------------VVAVKGCKVSDFGGRTLSLTQAGSIIPNPGTPES 404
Query: 349 HELREWFDSGGKNAATVSISREIAAGGAKNEIHK-TVSQIKNEGLGRSEKPDWVTVRAFI 407
+L+ W+D+ G + + S+ + GA + ++++ E G ++KPD+ +++A +
Sbjct: 405 FKLKGWYDNIGIHESFKSLKIDTGGSGADKIAQRISINRALEEHSGSTDKPDYFSIKASV 464
Query: 408 TFIKSDSFCYTACPLMIGD-------RQCNKKVTQSGN--RWQCDRCNQEIDECDYRYLL 458
TF K ++F Y ACP ++ + CNKK+ Q + W+C++C +E +RY+L
Sbjct: 465 TFCKPENFAYPACPNLVNSADATRPAQTCNKKLVQQDHDGTWRCEKCAMTYEEPTWRYVL 524
Query: 459 QAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRL 518
+ D TG W+T F + +++LG A EL K E + V +I+ + +F ++ R+
Sbjct: 525 SCSVTDSTGHMWLTLFDDQAKKLLGIDATELIKKKEENPEQV--NQIMNNTLFKEFSLRV 582
Query: 519 KIKEELYGDEQRVKITVIRADQVNYSSESRYLL 551
K ++E Y DE + + ++++Y+SES++L+
Sbjct: 583 KARQETYNDELKTRYQAAGINELDYASESQFLI 615
>gi|348683769|gb|EGZ23584.1| hypothetical protein PHYSODRAFT_556228 [Phytophthora sojae]
Length = 629
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 163/465 (35%), Positives = 253/465 (54%), Gaps = 28/465 (6%)
Query: 102 NHGPILKNEAPARIIPIAALNPYQG-RWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDS 160
N GP+++ + R+ I +LNPY G RW IKARVT + ++ + NARG GK+FS DLLD+
Sbjct: 181 NRGPVVRQDPNVRLSDIQSLNPYAGGRWTIKARVTNRAPIKNWTNARGSGKLFSVDLLDA 240
Query: 161 DGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDL 220
GGEIR T FN VD+FYE + G V+ + G +K A + F+ + N++E+ + S +
Sbjct: 241 RGGEIRATFFNDGVDKFYETLRPGGVFYFAGGKVKMANRRFSSVDNDYEVTFDQHSDISP 300
Query: 221 CTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNL 280
ED I + ++F+ I+EIES + VDVIGIV V I K G + +R ++L
Sbjct: 301 A-PEDGQISQMNYTFKKIAEIESVPAEANVDVIGIVRDVGQVNEITSKAGKQLFKRDISL 359
Query: 281 KDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLF 340
D S ++ T+W ++ +E V+++K +V+D++G+SIGT+ S+
Sbjct: 360 VDDSNAEIKCTMW-------NERAKEDCSSWLNQVVAIKGCRVSDYNGRSIGTMMSSSFT 412
Query: 341 INPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEI----HKTVSQIKNEGLGRSE 396
+NP EA L WF +GG A T S+S G + ++ IK + LG +
Sbjct: 413 VNPTIPEAGHLVNWFSNGGNAAQTKSLSSGGGGFGGGSLGTFAERAVINDIKGKQLGFGQ 472
Query: 397 KPDWVTVRAFITFIKSDS-FCYTACPLMIGDRQCNKKVTQS-GNRWQCDRCNQEIDECDY 454
KPD++TV+ + FIK D+ Y ACP +C KKV + C++C C+
Sbjct: 473 KPDYITVKGTVNFIKHDTGVFYQACP------KCQKKVVADVAQNYTCEKCQTSYSNCEN 526
Query: 455 RYLLQAQIQDQTGLTWVTAFQESGEEIL-GCPAKELYMLKYELQDD--VRFGEIIRSRVF 511
RY+L + D TG TW T F + G+ ++ G A E+ EL+D + + +F
Sbjct: 527 RYILSVVMLDHTGSTWTTCFNDQGKVVMNGRTADEI----GELRDTNPTLYESTFKEALF 582
Query: 512 NQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
QY+ RL++K E +E RVK V+ + VN+ ES+ LL I++
Sbjct: 583 KQYVCRLRVKAENVQEELRVKAGVVNLEPVNFVQESKDLLQAIAQ 627
>gi|342877980|gb|EGU79393.1| hypothetical protein FOXB_10069 [Fusarium oxysporum Fo5176]
Length = 608
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 157/453 (34%), Positives = 260/453 (57%), Gaps = 24/453 (5%)
Query: 110 EAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTC 169
A + I PI L+P+ +W IKARVT+K D++ ++ A G+GK+FS +LLD + GEI+ T
Sbjct: 168 HAGSNIYPIEGLSPFAHKWTIKARVTSKSDIKTWHKATGEGKLFSVNLLD-ESGEIKATG 226
Query: 170 FNAVVDRFYEIIEVGRVYLISK-GSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSI 228
FN D FY+ ++ G VY IS + A+K F++L N++E+ E + ++ E+ ++
Sbjct: 227 FNDQCDAFYDRLQEGSVYYISTPCRVALAKKQFSNLPNDYELTFERDTVIEK-AEDQTNV 285
Query: 229 PKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPIL-RKNGMETQRRILNLKDTSGRS 287
P+ +F+F I E++S E ++ VDVIG++ V I +K+G Q+R L L D +G S
Sbjct: 286 PQVRFNFCSIQELQSVEKDNTVDVIGVLKEVGEVGDITSKKDGRPFQKRELTLVDDTGFS 345
Query: 288 VELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAE 347
V +T+WG N D V++ K KV+DF GKS+ + S + ++PD +
Sbjct: 346 VRVTIWGKSANS--------FDAPPESVVAFKGTKVSDFGGKSLSLLSSGTMTVDPDIPD 397
Query: 348 AHELREWFDSGGKNAATVSISREIAAGG---AKNEIHKTVSQIKNEGLGRSEKPDWVTVR 404
AH L+ W+DS G+N T + + +A+ G + E K +SQ+K+E LG ++ + T++
Sbjct: 398 AHRLKGWYDSAGRN-DTFATHQNMASMGNATGRKEDLKIISQVKDENLGMDDQA-YYTIK 455
Query: 405 AFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQ 463
A I F+K ++FCY AC + CNKKVTQ + W C++C ++ +YRY+L +
Sbjct: 456 ATIVFVKQENFCYPACL----SQGCNKKVTQMPDGTWHCEKCAISHEKPEYRYILSLNVA 511
Query: 464 DQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEE 523
D T W++ F +SG +I+G A E+ LK DD +F ++ FR + K +
Sbjct: 512 DHTSHQWLSCFDDSGRQIVGRTADEMMELKE--NDDNKFMAAFEEANCKKFTFRCRAKMD 569
Query: 524 LYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
+G+ QR++ V+ +++ SE L +LI +
Sbjct: 570 NFGEAQRIRYQVMTVTPLDFKSEGIKLDELIKQ 602
>gi|389748589|gb|EIM89766.1| replication factor-a protein [Stereum hirsutum FP-91666 SS1]
Length = 596
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 160/499 (32%), Positives = 259/499 (51%), Gaps = 30/499 (6%)
Query: 62 NPGSFSTPNSGTFRAPNAGSIVRSFQPTVQPPYQPPPNFRNHGPILKNEAPAR--IIPIA 119
NP +F T + T P A +I PT P P+ ++ R I PI
Sbjct: 116 NPAAFPTDEATT---PAASNIT----PTSAPSATTTPSVPQQPRQQQSSRGTRNNIFPIE 168
Query: 120 ALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYE 179
L+PYQ W IKARV K D+R Y+N RG+GK F+ L+D D GEI+ T FNAV D Y+
Sbjct: 169 GLSPYQNNWTIKARVIQKSDIRTYSNQRGEGKFFNVTLMD-DSGEIKGTGFNAVADELYD 227
Query: 180 IIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHIS 239
+ +VY ISK + +++ F+ + E+E+ LE + ++ C + ++P +++F +
Sbjct: 228 KLVEDKVYYISKARVNLSKRKFSSAQ-EYELSLERNTEIEEC-HDTSNLPVVKYNFIELG 285
Query: 240 EIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNK 299
+E +SI DVIG+V V+ I K +R L L D+S SV LTLWG
Sbjct: 286 NLEELPKDSICDVIGVVKDVSEVSEIQTKTQRTLSKRELTLVDSSAFSVRLTLWG----- 340
Query: 300 EGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGG 359
K E + V++ K KV DF G+S+ S+ + INPD EAH +R W+D G
Sbjct: 341 ---KQAEQYNASPNSVIAFKGVKVGDFGGRSLSMFSSSTMAINPDMPEAHNIRGWYDDIG 397
Query: 360 KN----AATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSF 415
+ A T S++ G +T++ +K LG S+K ++ + RA + I+ ++
Sbjct: 398 TSTQFQAHTSSMTSAGTGGTINRSEMRTLNDVKESQLGSSDKVEYFSCRATVMHIRGENI 457
Query: 416 CYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQ 475
Y AC G C+KKV + + W+C++C++ + YRY++Q + D +G W++ F
Sbjct: 458 SYPAC----GTEGCSKKVVEGHDGWRCEKCDRSFETPTYRYMIQMAVADYSGQAWLSGFN 513
Query: 476 ESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITV 535
+ G + G A EL+ +K +DD + I++ N Y F + K++ + D R++ +
Sbjct: 514 DVGLIVFGMTANELHDIKE--RDDAIYTAILQKATCNTYNFACRAKQDTFNDTTRIRYGI 571
Query: 536 IRADQVNYSSESRYLLDLI 554
R +NY E++ +DL+
Sbjct: 572 SRIQPLNYEEETQSFVDLL 590
>gi|320037894|gb|EFW19830.1| replication factor-A protein 1 [Coccidioides posadasii str.
Silveira]
Length = 605
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 163/468 (34%), Positives = 256/468 (54%), Gaps = 29/468 (6%)
Query: 95 QPPPNFRNHGPILKNEAP--ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKV 152
QP + R P + AP A I PI AL+PY +W IKAR T K ++++ N G+G++
Sbjct: 148 QPQRHQRASVPTM---APTHANIYPIEALSPYSHKWTIKARCTNKSAIKKWYNRNGEGRL 204
Query: 153 FSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGS-LKPAQKNFNHLKNEWEIF 211
FS +LLD D GEIR T F D Y + E G VY IS ++ A++ F+++ N++E+
Sbjct: 205 FSVNLLD-DSGEIRATAFKEQCDLLYPLFEEGSVYYISSPCRVQMAKREFSNVNNDYELT 263
Query: 212 LEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKN-G 270
E + ++ + +D +P+ +F+F I + S E + +DV+G++ +V P + K+ G
Sbjct: 264 FERDTVIEKAEDHED-VPQMRFNFTSIGHLHSVEKGTTIDVLGVLKTVEPVAEVPSKSTG 322
Query: 271 METQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKS 330
+R L L D +G SV LT+WG + DV V++ K KV+DF G+S
Sbjct: 323 KRYTKRELMLVDDTGYSVPLTIWG--------AMATSFDVMPDSVVAFKGVKVSDFGGRS 374
Query: 331 IGTIPSTQLFINPDFAEAHELREWFDSGGK--NAATVSISREIA-AGGAKNEIHKTVSQI 387
+ + S + +PD EAH+L+ W+D+ GK AT ++S A + G + +I+K + ++
Sbjct: 375 LSLLNSGTITSDPDIEEAHKLKGWYDAQGKFDQFATHALSENAAISTGTRQDIYKAIVEV 434
Query: 388 KNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQ-SGNRWQCDRCN 446
++ LG +EKPD+ ++RA + FIK D+ CY AC +CNKKV Q +W C+ C
Sbjct: 435 RDNQLGMTEKPDYFSLRATVVFIKQDTICYPACV----QERCNKKVVQVDSEQWLCEHCE 490
Query: 447 QEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEII 506
+ +YRY+L A + D TG W+ F E G I+G PA L LK DD E I
Sbjct: 491 KSSLRPEYRYILSANVSDHTGQLWLNCFDEVGRAIMGMPANVLMELKE--SDDKAASEAI 548
Query: 507 RSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLI 554
++ LK K +L + + + V+ A +N+S ES L+ LI
Sbjct: 549 LHATCQ--MWNLKCKAKLDNFQNQPRYQVLGASPINFSHESSRLVSLI 594
>gi|303316318|ref|XP_003068161.1| replication factor-A protein 1 family protein [Coccidioides
posadasii C735 delta SOWgp]
gi|240107842|gb|EER26016.1| replication factor-A protein 1 family protein [Coccidioides
posadasii C735 delta SOWgp]
Length = 605
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 163/468 (34%), Positives = 256/468 (54%), Gaps = 29/468 (6%)
Query: 95 QPPPNFRNHGPILKNEAP--ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKV 152
QP + R P + AP A I PI AL+PY +W IKAR T K ++++ N G+G++
Sbjct: 148 QPQRHQRASVPTM---APTHANIYPIEALSPYSHKWTIKARCTNKSAIKKWYNRNGEGRL 204
Query: 153 FSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGS-LKPAQKNFNHLKNEWEIF 211
FS +LLD D GEIR T F D Y + E G VY IS ++ A++ F+++ N++E+
Sbjct: 205 FSVNLLD-DSGEIRATAFKEQCDLLYPLFEEGSVYYISSPCRVQMAKREFSNVNNDYELT 263
Query: 212 LEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKN-G 270
E + ++ + +D +P+ +F+F I + S E + +DV+G++ +V P + K+ G
Sbjct: 264 FERDTVIEKAEDHED-VPQMRFNFTSIGHLHSVEKGTTIDVLGVLKTVEPVAEVPSKSTG 322
Query: 271 METQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKS 330
+R L L D +G SV LT+WG + DV V++ K KV+DF G+S
Sbjct: 323 KRYTKRELMLVDDTGYSVPLTIWG--------AMATSFDVMPDSVVAFKGVKVSDFGGRS 374
Query: 331 IGTIPSTQLFINPDFAEAHELREWFDSGGK--NAATVSISREIA-AGGAKNEIHKTVSQI 387
+ + S + +PD EAH+L+ W+D+ GK AT ++S A + G + +I+K + ++
Sbjct: 375 LSLLNSGTITSDPDIEEAHKLKGWYDAQGKFDQFATHALSENAAISTGTRQDIYKAIVEV 434
Query: 388 KNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQ-SGNRWQCDRCN 446
++ LG +EKPD+ ++RA + FIK D+ CY AC +CNKKV Q +W C+ C
Sbjct: 435 RDNQLGMTEKPDYFSLRATVVFIKQDTICYPACV----QERCNKKVVQVDSEQWLCEHCE 490
Query: 447 QEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEII 506
+ +YRY+L A + D TG W+ F E G I+G PA L LK DD E I
Sbjct: 491 KSSLRPEYRYILSANVSDHTGQLWLNCFDEVGRAIMGMPANVLMELKE--SDDKAASEAI 548
Query: 507 RSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLI 554
++ LK K +L + + + V+ A +N+S ES L+ LI
Sbjct: 549 LHATCQ--MWNLKCKAKLDNFQNQPRYQVLGASPINFSHESSRLVSLI 594
>gi|169769542|ref|XP_001819241.1| replication factor A protein 1 [Aspergillus oryzae RIB40]
gi|83767099|dbj|BAE57239.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391863708|gb|EIT73008.1| single-stranded DNA-binding replication protein A [Aspergillus
oryzae 3.042]
Length = 605
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 159/449 (35%), Positives = 261/449 (58%), Gaps = 25/449 (5%)
Query: 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
A I PI A++PY +W IKAR T+K ++R ++N GDGK+FS +LLD D GEIR T FN
Sbjct: 169 ATIYPIEAISPYSHKWTIKARCTSKSNIRTWHNRNGDGKLFSVNLLD-DSGEIRATGFND 227
Query: 173 VVDRFYEIIEVGRVYLISK-GSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQ 231
D Y++ + G VY IS +K A+K F +L N++E+ E + V+ ++ D +P+
Sbjct: 228 QCDMLYDVFQEGSVYYISSPCGVKLAKKQFTNLNNDYELTFERDTVVEKAEDQAD-VPQI 286
Query: 232 QFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGME-TQRRILNLKDTSGRSVEL 290
+FSF I +++S E ++ +DVIG++ V I+ K + +R L L D++G SV L
Sbjct: 287 RFSFTTIGDLQSVEKDTTIDVIGVLKEVAEVSQIMSKTTNKPYNKRELTLVDSTGFSVRL 346
Query: 291 TLWGDFCNKEGQKLQEMVDVGFFP--VLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEA 348
T+WG ++ P V++ K KV+DF G+S+ + S + ++PD EA
Sbjct: 347 TVWG----------STALNFNVTPESVIAFKGVKVSDFGGRSLSLLSSGSMTVDPDIEEA 396
Query: 349 HELREWFDSGGKNAATVSISRE--IAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAF 406
H+L+ W+D+ G++ S + +AA K E KTV+Q+K E LG S++ + +++A
Sbjct: 397 HKLKGWYDAQGRDGVFASHASMPGVAASTTKLEQFKTVAQVKEEQLGMSDEVAYFSLKAT 456
Query: 407 ITFIKSDSFCYTACPLMIGDRQCNKKVTQ-SGNRWQCDRCNQEIDECDYRYLLQAQIQDQ 465
+ +IK D+ CY AC L G CNKKVT+ +W+C+RC++ +YRY++ + D
Sbjct: 457 VIYIKQDTMCYPAC-LSEG---CNKKVTELDPGQWRCERCDKTHPRPEYRYIMLISVSDH 512
Query: 466 TGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELY 525
TG +++ F E G ++G A +L ++ DD G+I + + FR + K + +
Sbjct: 513 TGQLYLSCFDEVGRYMMGTSADQL--MEIRQNDDKAAGDIFQDANCRTWNFRCRAKIDNF 570
Query: 526 GDEQRVKITVIRADQVNYSSESRYLLDLI 554
GD+QR++ ++ A VNYS E+ L ++I
Sbjct: 571 GDQQRIRCQIVTAKPVNYSEEALRLANMI 599
>gi|409045840|gb|EKM55320.1| hypothetical protein PHACADRAFT_255854 [Phanerochaete carnosa
HHB-10118-sp]
Length = 540
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 157/445 (35%), Positives = 251/445 (56%), Gaps = 26/445 (5%)
Query: 117 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDR 176
PI L+PYQ W I+ +VT K D+R+Y+NARGDGK+FS L+D D GEI+ T FN VD
Sbjct: 111 PIEGLSPYQNNWTIRVKVTQKSDIRQYSNARGDGKLFSAVLMD-DTGEIKATAFNNNVDE 169
Query: 177 FYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFR 236
FY +E G++Y ISKG + A+K FN++ NE+E+ L+ + ++ C D + + F
Sbjct: 170 FYPKLEEGKIYYISKGQVSLAKKKFNNVNNEYELGLQRGTIIEEC--RDGPVLNIHYKFI 227
Query: 237 HISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDF 296
+ ++ + +DV+GIV ++ + + G + +R L + D SG SV LTLWG
Sbjct: 228 PLDQLMNTNPGDTIDVLGIVKEMSDVTHLTSRQGNDLTKRELTIVDRSGASVRLTLWG-- 285
Query: 297 CNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFD 356
K+ + E + P+++ KS KV DF G+S+ + S+ + INPD +AH LR W+D
Sbjct: 286 --KQADRYCESGE----PIIAWKSVKVGDFGGRSLSMLSSSSMEINPDIPDAHVLRGWYD 339
Query: 357 SGGK----NAATVSISREIAAGGA--KNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFI 410
+ GK T S R +GGA ++EI + + +++ LG +KPD+ + A I I
Sbjct: 340 TDGKVQDFQPQTSSAPR--GSGGAFNRDEI-RLLDDVRSANLGGGDKPDFFSAHATIMHI 396
Query: 411 KSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTW 470
KSD+ Y AC ++ CNKKV + + W+C++C++ + YRY++ + D +G W
Sbjct: 397 KSDNIAYPACQ----NQGCNKKVIEQHDGWRCEKCDKVFERPSYRYIMAMAVADHSGQVW 452
Query: 471 VTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQR 530
F E+G I A +L LK +DD ++ +++ S V Y F + K E + + R
Sbjct: 453 FQCFNEAGVVIFDMTADQLVELKD--RDDAQYNKVLESAVGTTYNFTCRAKMESFQENNR 510
Query: 531 VKITVIRADQVNYSSESRYLLDLIS 555
V+ V + ++Y E YL+ L+S
Sbjct: 511 VRYGVQKILPLDYKEEGNYLMKLLS 535
>gi|310793692|gb|EFQ29153.1| replication factor-a protein 1 [Glomerella graminicola M1.001]
Length = 608
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 154/469 (32%), Positives = 264/469 (56%), Gaps = 23/469 (4%)
Query: 93 PYQPPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKV 152
P Q P+ R+ G + I PI AL+PY +W IKARVT K D+R ++ G+GK+
Sbjct: 153 PQQSIPS-RSAGGATGQHGSSNIYPIEALSPYAHKWTIKARVTQKSDIRTWHKPSGEGKL 211
Query: 153 FSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISK-GSLKPAQKNFNHLKNEWEIF 211
FS +LLD + GEI+ T FN VD++Y++++ G VY IS ++ A+K F +L N++E+
Sbjct: 212 FSVNLLD-ESGEIKATGFNEQVDQYYDMLQEGGVYYISSPCKVQLAKKQFTNLPNDYELT 270
Query: 212 LEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKN-G 270
E + ++ E+ S+P+ +F+F +I E++ E ++ VD+IG++ V+ I+ K+ G
Sbjct: 271 FERDTVIEK-AEDQSSVPQVRFNFCNIQELQEVEKDATVDIIGVLKDVDEVSQIVSKSTG 329
Query: 271 METQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKS 330
++R L L D + SV +T+WG K D V++ K KV+DF G+S
Sbjct: 330 KPYEKRELTLVDDTNYSVRVTIWG--------KSATNFDAKPESVVAFKGTKVSDFGGRS 381
Query: 331 IGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGA--KNEIHKTVSQIK 388
+ + S + I+PD +AH L+ W+DS G+N S + + G A + + K++ Q+K
Sbjct: 382 LSLLSSGTMSIDPDIPDAHRLKGWYDSSGRNDTFSSHNNMASMGNATGRKDQDKSILQVK 441
Query: 389 NEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQ 447
E LG E+ D+ ++A I +IK D+F Y AC + C+KKVT G+ W+C++C+
Sbjct: 442 EENLGM-EQQDYFNLKATIVYIKQDNFAYPACM----NEGCSKKVTDMGDGTWRCEKCDV 496
Query: 448 EIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIR 507
+ +YRY++ + D T W++ F + G ++G A +L L+ E D+ + +
Sbjct: 497 SHPKPEYRYIMSVNVCDHTNQLWLSCFDDVGRVVMGMSADQLMALREE--DETKMAQAFE 554
Query: 508 SRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
+ FR + K + +G+ QR++ V+ A ++Y +E L +LI +
Sbjct: 555 EANCRKLNFRCRAKMDTFGESQRIRYQVMSASPIDYKAEGAKLAELIKQ 603
>gi|407928380|gb|EKG21239.1| Nucleic acid binding OB-fold tRNA/helicase-type [Macrophomina
phaseolina MS6]
Length = 616
Score = 268 bits (685), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 151/468 (32%), Positives = 266/468 (56%), Gaps = 21/468 (4%)
Query: 95 QPPPNFRNHGPILKNEAP----ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDG 150
+PP H + AP A++ PI AL+PY +W IKAR K D++ ++N G+G
Sbjct: 152 KPPVKREQHSTLPSRNAPPPGLAQLFPIEALSPYTHKWTIKARCVHKSDIKTWHNKNGEG 211
Query: 151 KVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEI 210
K+FS +LLD + GEIR T F D+ Y+ G VY IS S+K A+K F+++ N++E+
Sbjct: 212 KLFSVNLLD-ESGEIRATGFKEQCDQLYDTFREGGVYYISNCSVKLAKKQFSNVNNDYEL 270
Query: 211 FLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNG 270
+ S V+ ++ DS+P+ +++F HI ++++ E N+ +D IG++ V I+ K
Sbjct: 271 TFQNDSIVEPA-DDPDSVPQVRYNFTHIGDLQNVEPNTTIDTIGVLKDVGEVSEIISKTT 329
Query: 271 MET-QRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGK 329
+ Q+R L + D S SV LT+WG + D V++ K KV+DF G+
Sbjct: 330 SKPYQKRELTIVDDSMTSVRLTIWG--------PTAQGFDASPESVVAFKGVKVSDFGGR 381
Query: 330 SIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKN 389
S+ + S + INPD EAH+L+ W+D+ G+N S ++ + G +++ +KT++Q+ +
Sbjct: 382 SLSLLSSGSMNINPDIDEAHKLKGWYDAQGRNDQFTS-HQQSSTGTSRSRKYKTIAQVND 440
Query: 390 EGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQ-SGNRWQCDRCNQE 448
E +G S++P++ ++A I ++K D+F Y AC CNKKV + + W+C++C+
Sbjct: 441 EQIGMSDQPEYFDLKATIVYVKHDNFAYPAC----ASAGCNKKVVEINPGEWRCEKCDIT 496
Query: 449 IDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRS 508
+ +YRY++ + D TG W++ F +SG+ I+G A EL ++ ++ +F +
Sbjct: 497 HTKPEYRYIMSCNVSDHTGQLWLSCFDDSGKIIMGKSADELVEIRDNEENPSKFEQSFVD 556
Query: 509 RVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
++F +K K + + D+QRV+ V A ++N S E L++ + +
Sbjct: 557 ATCKTFIFNVKAKMDTFQDQQRVRYQVSSAKELNLSFECARLIETLKQ 604
>gi|119188411|ref|XP_001244812.1| replication factor-A protein 1 [Coccidioides immitis RS]
Length = 605
Score = 268 bits (685), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 163/468 (34%), Positives = 255/468 (54%), Gaps = 29/468 (6%)
Query: 95 QPPPNFRNHGPILKNEAP--ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKV 152
QP + R P + AP A I PI AL+PY +W IKAR T K ++++ N G+G++
Sbjct: 148 QPQRHQRATVPTM---APTHANIYPIEALSPYSHKWTIKARCTNKSAIKKWYNRNGEGRL 204
Query: 153 FSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGS-LKPAQKNFNHLKNEWEIF 211
FS +LLD D GEIR T F D Y + E G VY IS ++ A++ F+++ N++E+
Sbjct: 205 FSVNLLD-DSGEIRATAFKEQCDLLYPLFEEGSVYYISSPCRVQMAKREFSNVNNDYELT 263
Query: 212 LEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKN-G 270
E + ++ + +D +P+ +F+F I + S E + +DV+G++ +V P + K+ G
Sbjct: 264 FERDTVIERAEDHED-VPQMRFNFTSIGHLHSVEKGTTIDVLGVLKTVEPVAEVPSKSTG 322
Query: 271 METQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKS 330
+R L L D +G SV LT+WG DV V++ K KV+DF G+S
Sbjct: 323 KRYTKRELMLVDDTGYSVPLTIWGGMATS--------FDVMPDSVVAFKGVKVSDFGGRS 374
Query: 331 IGTIPSTQLFINPDFAEAHELREWFDSGGK--NAATVSISREIA-AGGAKNEIHKTVSQI 387
+ + S + +PD EAH+L+ W+D+ GK AT ++S A + G + +I+K + ++
Sbjct: 375 LSLLNSGTITSDPDIEEAHKLKGWYDAQGKFDQFATHALSENAAISTGTRQDIYKAIVEV 434
Query: 388 KNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQ-SGNRWQCDRCN 446
++ LG +EKPD+ ++RA + FIK D+ CY AC +CNKKV Q +W C+ C
Sbjct: 435 RDNQLGMTEKPDYFSLRATVVFIKQDTICYPACV----QERCNKKVVQVDPEQWLCEHCE 490
Query: 447 QEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEII 506
+ +YRY+L A + D TG W+ F E G I+G PA L LK DD E I
Sbjct: 491 KSSLRPEYRYILSANVSDHTGQLWLNCFDEVGRAIMGMPANVLMELKE--SDDKAASEAI 548
Query: 507 RSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLI 554
++ LK K +L + + + V+ A +N+S ES L+ LI
Sbjct: 549 LHATCQ--MWNLKCKAKLDNFQNQPRYQVLGASPINFSHESSRLVSLI 594
>gi|345494357|ref|XP_003427279.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like,
partial [Nasonia vitripennis]
Length = 584
Score = 268 bits (685), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 151/414 (36%), Positives = 237/414 (57%), Gaps = 26/414 (6%)
Query: 117 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDR 176
PIAAL+PYQ RW IK RVT K +R ++N+RG+GK+FS DLLD + GEIR T F D+
Sbjct: 173 PIAALSPYQNRWVIKVRVTNKSPIRTWSNSRGEGKLFSIDLLD-ESGEIRCTAFRDQCDK 231
Query: 177 FYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFR 236
FY++IE+G+VY IS+ LKPA K FN+LKN++E+ L + S + +C EE++ IP QF F
Sbjct: 232 FYDMIEIGKVYYISRCQLKPANKQFNNLKNDYEMTLTSDSEIAICNEENEGIPTLQFDFV 291
Query: 237 HISEIESAENNSIVDVIGIVISVNP-SVPILRKNGMETQRRILNLKDTSGRSVELTLWG- 294
I+ +E+ + ++DV+GIV + + R G E ++R + + D + + +TLWG
Sbjct: 292 PINTVEAKSKDELIDVLGIVKTCSDIQTLTARTTGRELKKRDIGIVDENNDLITVTLWGT 351
Query: 295 ---DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFS-GKSIGTIPSTQLFINPDFAEAHE 350
DF D PV+++K K+ +F+ GK++ + S+ L ++PD +AH
Sbjct: 352 QAIDF------------DGSTNPVIAIKGAKIGEFNGGKNLSLVASSMLQVDPDIPQAHR 399
Query: 351 LREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFI 410
LR WF + G + S+SR + GG N T ++++ G + P+ +A + I
Sbjct: 400 LRGWFKTVGATEESRSLSRTLGGGGNLNGPWLTFKEVEDNRFGHQDMPNMFIAKATVNLI 459
Query: 411 KSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLT 469
++++ Y +CP C KKV QS ++C++C+++ YR L + D TG
Sbjct: 460 RAENALYKSCP----SEGCKKKVIDQSNGMYKCEKCSRDYPNFTYRLLASTNLVDWTGNQ 515
Query: 470 WVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEE 523
W TAF E E +L A+EL LK +D + E I + F Y+F+L+I+ E
Sbjct: 516 WATAFNEEAEVLLSASAQELGELKE--KDGDTYMEKIGAAAFKSYIFKLRIRLE 567
>gi|346974864|gb|EGY18316.1| replication factor-A protein [Verticillium dahliae VdLs.17]
Length = 617
Score = 268 bits (684), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 153/450 (34%), Positives = 247/450 (54%), Gaps = 21/450 (4%)
Query: 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
+ I PI AL+PY +W IKARVT K D+R ++ G+GK+FS +LLD + GEI+ T FN
Sbjct: 178 SNIYPIEALSPYAHKWTIKARVTQKSDIRTWHKPSGEGKLFSVNLLD-ESGEIKATGFNE 236
Query: 173 VVDRFYEIIEVGRVYLISK-GSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQ 231
D++Y++++ G VY IS + A+K F +L N++E+ E + ++ E+ ++P+
Sbjct: 237 QCDQYYDLLQEGSVYYISNPCKVGMAKKQFTNLPNDYELTFERDTVIEK-AEDQTNVPQV 295
Query: 232 QFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKN-GMETQRRILNLKDTSGRSVEL 290
+++F +I E++S E ++ VDV+G++ V I+ K+ G ++R L L D S SV +
Sbjct: 296 RYNFCNIQELQSVEKDATVDVVGVLKDVGEVSQIVSKSTGKPYEKRELTLVDDSNFSVRI 355
Query: 291 TLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHE 350
T+WG K + D V++ K KV+DF G+S+ + S + ++PD +AH
Sbjct: 356 TIWG--------KSAQGFDASPESVVAFKGVKVSDFGGRSLSLLSSGTMSVDPDIPDAHR 407
Query: 351 LREWFDSGGKNAATV---SISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFI 407
L+ W DS G+N A S+ + A + K + Q+K+E LG EK D+ ++A I
Sbjct: 408 LKGWHDSSGRNDAFATHNSMGSGLGAATGRPNEDKVIVQVKDEQLGMGEKQDFFNLKATI 467
Query: 408 TFIKSDSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQT 466
+IK D+F Y AC + CNKKV + W+CD+C+ D +YRY++ + D T
Sbjct: 468 VYIKQDTFAYPACR----NEGCNKKVVDMNDGTWRCDKCDVSHDRPEYRYIMSVNVCDHT 523
Query: 467 GLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYG 526
W++ F E G I+G A +L LK E D+ + + FR K + +G
Sbjct: 524 SQLWLSCFDEVGRSIMGMSADQLMELK-EGGDEATLANAFEAANCKKLAFRCSAKMDTFG 582
Query: 527 DEQRVKITVIRADQVNYSSESRYLLDLISK 556
+ QR++ A V Y SE L +LI +
Sbjct: 583 ESQRIRYQARSAAPVEYKSEGNKLAELIKQ 612
>gi|303391020|ref|XP_003073740.1| DNA replication factor A protein 1 [Encephalitozoon intestinalis
ATCC 50506]
gi|303302888|gb|ADM12380.1| DNA replication factor A protein 1 [Encephalitozoon intestinalis
ATCC 50506]
Length = 572
Score = 268 bits (684), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 168/469 (35%), Positives = 264/469 (56%), Gaps = 51/469 (10%)
Query: 103 HGPILKNEAPARI----------IPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKV 152
HG L E R+ I LNP+ +W IK RV KGD+RR++N +G+GKV
Sbjct: 141 HGKALDEEDKKRVKKDIKDEGEFTAINMLNPFHNKWMIKGRVVLKGDIRRFSNQKGEGKV 200
Query: 153 FSFDLLDSDG-GEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIF 211
F+F++ SDG ++++ CF+ VD F+ I+EVG+VY +SKG++K A K ++ ++EI
Sbjct: 201 FNFEI--SDGTAQVKIICFSDCVDIFFPIVEVGKVYSVSKGTVKMANKQYSTNPFDYEII 258
Query: 212 LEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISV-NPSVPILRKNG 270
L+ S V CT +D S P+ F+F +S++ + N+ DVIG+V V PS ++R
Sbjct: 259 LDKNSEVR-CTVDDGS-PRYFFNFIKLSDL--SLGNAYCDVIGVVREVYAPSTVMVRSTQ 314
Query: 271 METQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKS 330
E +R + L D SG SV LTLWG + +D+ VL +KS KV++F+G S
Sbjct: 315 NELLKRDIILVDESG-SVRLTLWGP---------KAELDIEGGVVLGLKSVKVSEFNGIS 364
Query: 331 IGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNE 390
I T +Q+ INPD EAHEL W+ S GK+ V++ R K E + + ++K
Sbjct: 365 ISTTGGSQVVINPDIPEAHELAGWYQSTGKDMQ-VALPR-------KEEKRRLIQEVKEN 416
Query: 391 GLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQ--SGNRWQCDRCNQE 448
L S T++ + F+K D+ YT+C CNKKV SGN ++C+RCN
Sbjct: 417 ELAYS------TIQGTVMFLKEDALWYTSCK----GEGCNKKVVMEDSGN-YRCERCNMT 465
Query: 449 IDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRS 508
++C+YRY++ + D TG W++ F E+ G PA+E+ + E +++ +I+
Sbjct: 466 YEDCNYRYMVTMHLGDFTGQVWLSLFDEAAASFFGIPAQEMKRMSEESPAELQ--ALIKG 523
Query: 509 RVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKS 557
F +YLFR+K K++ Y DE R++ + + + ++ ES+ LLD I K+
Sbjct: 524 MYFKEYLFRIKSKQDSYNDEIRMRYSGLSSSPLDIRKESKRLLDAIEKA 572
>gi|390597691|gb|EIN07090.1| replication factor-a protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 621
Score = 266 bits (679), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 166/516 (32%), Positives = 268/516 (51%), Gaps = 36/516 (6%)
Query: 50 FNLQNSGTFNSQNPGSFSTPNSGTFRAPNAGSIVRSFQPTVQPPYQPPPNFRNHGPILKN 109
L + T + P + + P RA +A S+ + P P P N ++ G
Sbjct: 123 ITLSDQPTTDGDVPMAETAPTPAPARA-SAPSVSNTVPPRSAPQRSTPGN-KSGG----- 175
Query: 110 EAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTC 169
+ I+PI L+PYQ W IKARVT K D+R ++N RG+GK+F+ L+D + GEIR T
Sbjct: 176 -RQSAILPIEGLSPYQNNWTIKARVTQKSDIRTWSNQRGEGKLFNVTLMD-ESGEIRGTG 233
Query: 170 FNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIP 229
FN VVD YE + G+VY IS+ + A+K F++L N++E+ E + V+ C + +P
Sbjct: 234 FNDVVDALYEKFQEGKVYFISRARVNLAKKKFSNLANDYELSFERNTEVEECLDP-SGVP 292
Query: 230 KQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGM-ETQRRILNLKDTSGRSV 288
++ F ++E+E E +S DV+G+V I+ K E +R L L D+SG SV
Sbjct: 293 AVKYEFTPLAELEQKEKDSTCDVLGVVKEDGGVATIVSKTTHKELLKRELTLVDSSGYSV 352
Query: 289 ELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEA 348
LTLWG K E + PV++ K +V DF G+S+ + S+ + I PD E
Sbjct: 353 RLTLWG--------KQAEAWNHTDNPVVAFKGVRVGDFGGRSLSMVSSSTMQIEPDIPEV 404
Query: 349 HELREWFDSGGKNAATVSIS--------REIAAGGAKNEIHKTVSQIKNEGLGRSEKPDW 400
H LR W+D G + + S S + + E+ KT+ +I++ LG S++PD
Sbjct: 405 HHLRGWYDGVGNSQSFQSHSFLSGGAGGAGMGGTFNRAEV-KTLGEIRDLQLGSSDRPDN 463
Query: 401 VTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQ-SGNRWQCDRCNQEIDECDYRYLLQ 459
+A + ++ ++ Y ACP CNKKV Q RW+C++C++ D +YRY++
Sbjct: 464 FFAQATVMHVRGENIAYPACP----KEGCNKKVVQIPDGRWRCEKCDESYDAPEYRYIVS 519
Query: 460 AQIQDQTGLTWVTAFQESGEEIL-GCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRL 518
+ D TG W F + G + A EL +K +D+ +F I+ + F
Sbjct: 520 MAVADHTGQAWFQGFNDVGLAVFNNMSATELVQIKE--RDEAKFNGILHKAGCQTFNFSC 577
Query: 519 KIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLI 554
+ K++ +GD RV+ + R ++Y++++ YL DL+
Sbjct: 578 RAKQDTFGDSTRVRYGISRITPLDYAADAAYLRDLL 613
>gi|193667016|ref|XP_001951063.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Acyrthosiphon pisum]
Length = 609
Score = 265 bits (678), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 159/448 (35%), Positives = 257/448 (57%), Gaps = 21/448 (4%)
Query: 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
+ I PI +L+PYQ +W I+ARV K +R +NN RG+GK+FS DLLD + GEIR T FN+
Sbjct: 170 SNIHPINSLSPYQNKWTIRARVVNKAPVRTWNNQRGEGKLFSMDLLD-ESGEIRATAFNS 228
Query: 173 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDS-IPKQ 231
D+F+++IEV +VY I++G++K A K F++L N++E+ L + + C + DDS +P
Sbjct: 229 ECDKFFDMIEVNKVYFITRGAIKTANKKFSNLNNDYELTLSGETQIFPCHDFDDSQMPAL 288
Query: 232 QFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNG-METQRRILNLKDTSGRSVEL 290
+F+F +S+++ + + IVDVIG+ + ++ K E ++R + + D S SV +
Sbjct: 289 KFNFVPLSQVKDVDVDGIVDVIGVCQTAGELTMLMSKTTRKELKKRDVTIVDQSLSSVTI 348
Query: 291 TLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSG-KSIGTIPSTQLFINPDFAEAH 349
TLW E D PV+++K ++ +F G KS+ + ST + INPD EAH
Sbjct: 349 TLW--------DTQAEDFDGSLQPVIAIKGSRIREFMGSKSLSLLGSTVMQINPDIDEAH 400
Query: 350 ELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITF 409
LR W+DS NA SIS G N T+ + LG +K D+ ++ + + F
Sbjct: 401 RLRGWYDSLPSNAEFTSISARSDVGA--NNQFLTIKGAQLAQLGSGDKADYYSMYSHLIF 458
Query: 410 IKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGL 468
+KS+S Y ACP C KKV ++ ++C++CN E + YR +L AQ+ D TG
Sbjct: 459 VKSESALYKACP----KPDCQKKVIDRNDGTYRCEKCNDETENFKYRLMLSAQLSDSTGN 514
Query: 469 TWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDE 528
WVT FQE+ E +LG + EL L E +++ + ++ ++++F + R + K E Y +E
Sbjct: 515 QWVTMFQETAESLLGTTSAELGRLMEESKEE--YSDVFQNQMFKLFDIRARAKMETYNNE 572
Query: 529 QRVKITVIRADQVNYSSESRYLLDLISK 556
R+K+T+ ++Y S L+ I +
Sbjct: 573 TRLKVTLFSIKPIDYKVASTKLIATIKR 600
>gi|322778947|gb|EFZ09361.1| hypothetical protein SINV_08959 [Solenopsis invicta]
Length = 572
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 152/447 (34%), Positives = 248/447 (55%), Gaps = 22/447 (4%)
Query: 114 RIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAV 173
R PIAAL+PYQ RW IKARV K ++ ++++RG+GK F L+D + GEIR F +
Sbjct: 135 RTTPIAALSPYQNRWVIKARVIHKSLIKTWSDSRGEGKFFFMGLID-ESGEIRCKAFGEM 193
Query: 174 VDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQF 233
VD+FY++I G VY IS+ +LK A K +N +KN++E+ + + + + C + ++ IP Q+
Sbjct: 194 VDKFYDLIVAGNVYYISRCTLKTANKQYNSMKNDYEMLMTSDTEIVPCRDSNNDIPTLQY 253
Query: 234 SFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLW 293
+F IS++E E N ++DV+G+V +V + G E +R +++ D S V +TLW
Sbjct: 254 NFSPISQVEHKEKNDLLDVLGVVTTVGDVQHFTARTGRELIKRNISIVDDSDTMVTVTLW 313
Query: 294 GDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELRE 353
G E D ++++K +V++F+GK + I S+ + +P+ EAH LR
Sbjct: 314 G--------TQAEEFDASNNTIIAIKEARVDEFNGKHLSLIMSSIIEKDPNIPEAHRLRG 365
Query: 354 WFDSGGKNAATVSISREIAAGGAK--NEIHKTVSQIKNEGLGRSEK-PDWVTVRAFITFI 410
W+ + G + S+SR GG+ N T + + LG+ PD T+ A I I
Sbjct: 366 WYTAVGHSETAKSLSR---VGGSTDFNGPLYTFQEATDARLGKKMNLPDSFTIVATIKQI 422
Query: 411 KSDSFCYTACPLMIGDRQCNKK-VTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLT 469
++++ Y ACPL C KK + Q+ ++C++CN++ YR L ++ D TG
Sbjct: 423 RTENSPYRACPL----ESCKKKLIDQNNGTFRCEKCNKKYPNFTYRLLANMELADATGSR 478
Query: 470 WVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQ 529
W+TAF E E+ILG A+EL LK +D + + I F ++F LK + E++ D
Sbjct: 479 WITAFNEEAEKILGMSAQELGELKENDKD--AYLQKIGEATFKTFMFNLKARSEVFQDTM 536
Query: 530 RVKITVIRADQVNYSSESRYLLDLISK 556
R+K +NY + +L+D +SK
Sbjct: 537 RIKRVCTSVRPINYKTYLPHLIDKVSK 563
>gi|426196046|gb|EKV45975.1| hypothetical protein AGABI2DRAFT_193885 [Agaricus bisporus var.
bisporus H97]
Length = 591
Score = 265 bits (677), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 152/452 (33%), Positives = 249/452 (55%), Gaps = 23/452 (5%)
Query: 109 NEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVT 168
N + PI L+PYQ W IKARVT K D++ ++N+RG+GK+FS L+D D GEI+ T
Sbjct: 151 NTSGVATFPIENLSPYQNNWTIKARVTQKSDIKNWSNSRGEGKLFSVTLMD-DSGEIKAT 209
Query: 169 CFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSI 228
FN+VVD + +E +VY ISK + A+K F+++ N++E+ LE ++ + C E +
Sbjct: 210 AFNSVVDELFPRLEDSKVYYISKARVNFAKKKFSNVTNDYELTLERSTQITEC-HETTGL 268
Query: 229 PKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPIL-RKNGMETQRRILNLKDTSGRS 287
P+ +++F + ++E+ ++I DVIG++ ++ I R Q+R L L D SG S
Sbjct: 269 PEMRYTFVGLEKLENLNKDAICDVIGVLKDISAVSEITARTTNRSFQKRELTLVDKSGCS 328
Query: 288 VELTLWGDFCNKEGQKLQ-EMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFA 346
++LTLWG K+ + E +G F K KV DF G S+ T PST + ++P
Sbjct: 329 IQLTLWG----KQAESFTGEPGSIGAF-----KGVKVGDFGGVSLSTTPSTHIQLDPHIQ 379
Query: 347 EAHELREWFDSGGKNAATVS---ISREIAAGGAKNEIH-KTVSQIKNEGLGRSEKPDWVT 402
+ + LR W+DS G + + S I G A N +++++IK +G +K D
Sbjct: 380 DCYTLRGWWDSQGSDMSFQSKTVIGGGGGLGIAFNRAQVRSLNEIKEAEVGMGDKADTFC 439
Query: 403 VRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQI 462
+ I I+ + Y ACP CNKK++ SG+ W CD+C + +YRY+L +
Sbjct: 440 CQGTIVHIRDQNLLYPACP----GNNCNKKMSMSGDTWVCDKCGTNAETPEYRYILSMAV 495
Query: 463 QDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKE 522
D +G W+ F E+ + G ELY LK ++D+ ++ +I Y F + K+
Sbjct: 496 ADWSGQAWLQGFNEAAVIVFGMSGNELYDLK--MRDEDKYNAVIHKAHCQTYNFACRAKK 553
Query: 523 ELYGDEQRVKITVIRADQVNYSSESRYLLDLI 554
+ Y D R++ + R ++V+Y +E++YL DL+
Sbjct: 554 DSYEDRVRIRYGISRIEKVDYHAEAQYLRDLL 585
>gi|409079138|gb|EKM79500.1| hypothetical protein AGABI1DRAFT_114047 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 591
Score = 265 bits (677), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 152/452 (33%), Positives = 249/452 (55%), Gaps = 23/452 (5%)
Query: 109 NEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVT 168
N + PI L+PYQ W IKARVT K D++ ++N+RG+GK+FS L+D D GEI+ T
Sbjct: 151 NTSGVATFPIENLSPYQNNWTIKARVTQKSDIKNWSNSRGEGKLFSVTLMD-DSGEIKAT 209
Query: 169 CFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSI 228
FN+VVD + +E +VY ISK + A+K F+++ N++E+ LE ++ + C E +
Sbjct: 210 AFNSVVDELFPRLEDSKVYYISKARVNFAKKKFSNVTNDYELTLERSTQITEC-HETTGL 268
Query: 229 PKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPIL-RKNGMETQRRILNLKDTSGRS 287
P+ +++F + ++E+ ++I DVIG++ ++ I R Q+R L L D SG S
Sbjct: 269 PEMRYTFVGLEKLENLNKDAICDVIGVLKDISAVSEITARTTNRSFQKRELTLVDKSGCS 328
Query: 288 VELTLWGDFCNKEGQKLQ-EMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFA 346
++LTLWG K+ + E +G F K KV DF G S+ T PST + ++P
Sbjct: 329 IQLTLWG----KQAESFTGEPGSIGAF-----KGVKVGDFGGVSLSTTPSTHIQLDPHIQ 379
Query: 347 EAHELREWFDSGGKNAATVS---ISREIAAGGAKNEIH-KTVSQIKNEGLGRSEKPDWVT 402
+ + LR W+DS G + + S I G A N +++++IK +G +K D
Sbjct: 380 DCYTLRGWWDSQGSDMSFQSKTVIGGGGGLGIAFNRAQVRSLNEIKEAEVGMGDKADTFC 439
Query: 403 VRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQI 462
+ I I+ + Y ACP CNKK++ SG+ W CD+C + +YRY+L +
Sbjct: 440 CQGTIVHIRDQNLLYPACP----GNNCNKKMSMSGDTWVCDKCGTNAETPEYRYILSMAV 495
Query: 463 QDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKE 522
D +G W+ F E+ + G ELY LK ++D+ ++ +I Y F + K+
Sbjct: 496 ADWSGQAWLQGFNEAAVIVFGMSGNELYDLK--MRDEDKYNAVIHKAHCQTYNFACRAKK 553
Query: 523 ELYGDEQRVKITVIRADQVNYSSESRYLLDLI 554
+ Y D R++ + R ++V+Y +E++YL DL+
Sbjct: 554 DSYEDRVRIRYGISRIEKVDYHAEAQYLRDLL 585
>gi|392595534|gb|EIW84857.1| replication factor-A protein 1 [Coniophora puteana RWD-64-598 SS2]
Length = 598
Score = 265 bits (676), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 149/448 (33%), Positives = 250/448 (55%), Gaps = 20/448 (4%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
+ PI L+PYQ W IKARVT K ++R ++NARG+GK+F+ L+D + GEIR T FNAVV
Sbjct: 165 VFPIEGLSPYQNNWTIKARVTQKSEVRNWSNARGEGKLFNVTLMD-ESGEIRATGFNAVV 223
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
D Y +E G+VY +SK + A+K F++++N++E+ LE + V+ C + + +P +++
Sbjct: 224 DELYPKLEEGKVYYVSKARVNLAKKKFSNIQNDYELSLEKNTEVEECLDTTN-LPTIKYN 282
Query: 235 FRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWG 294
F + E+ES + DVIGIV P I K +R L + D S SV +TLWG
Sbjct: 283 FISLGELESLAKDVNCDVIGIVKEAGPLSEITSKTNRTIPKRELTIVDKSQFSVRMTLWG 342
Query: 295 DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREW 354
K E+ PV++ K KV D+ G+S+ + S+ + I+PD EAH LR W
Sbjct: 343 --------KQAELYSAEDQPVIAFKGVKVGDYGGRSLSMMSSSLMSISPDIPEAHALRGW 394
Query: 355 FDSGGKNAATVSISREIAAGGAKNEIHKT----VSQIKNEGLGRSEKPDWVTVRAFITFI 410
+D G + S + G + +++ +S +K+ LG +K D+ + RA I I
Sbjct: 395 YDGIGNEKTFTAQSSAVPLGASFGGFNRSELRHISDVKDSQLGMGDKADFFSTRASIMHI 454
Query: 411 KSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTW 470
K+++ Y AC ++ CNKKVT G+ W+C++C++ + +YRY++ + D +G W
Sbjct: 455 KTENIAYPAC----ANQGCNKKVTDVGDGWRCEKCDKTFERPEYRYIVSIAVADWSGQAW 510
Query: 471 VTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQR 530
+ F ++GE I G A E+ +K D+ + ++ + F + K++ Y D R
Sbjct: 511 LQGFNDAGEAIFGKSADEVMEIKN--CDEQEYNAVMAQATGVTFNFGCRAKQDTYNDNTR 568
Query: 531 VKITVIRADQVNYSSESRYLLDLISKSF 558
V+ + + V+Y E+++L++L+ +
Sbjct: 569 VRYGISKILSVDYREEAKHLVELLQSDW 596
>gi|340923669|gb|EGS18572.1| putative DNA replication protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 617
Score = 264 bits (674), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 151/445 (33%), Positives = 252/445 (56%), Gaps = 21/445 (4%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
I P+ AL+PY +W IK RV +K +R ++ A G+GK+F+ L D + G+IR+T FN V
Sbjct: 184 IYPVEALSPYNSKWTIKVRVRSKPPIRTWHKASGEGKLFNVILFD-ETGDIRMTGFNDAV 242
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
DR+Y++++ G+VY IS ++ AQ+ + +++E+ ++ + ++ E+D S+P+ + +
Sbjct: 243 DRWYDVLQEGQVYYISGCKVRMAQRKLDARASDYEMVIDRDTVIEK-AEDDGSVPQVRLN 301
Query: 235 FRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMET-QRRILNLKDTSGRSVELTLW 293
+I ++++ E N+IVDV+G++ V P I+ K + +R + L D +G SV LTLW
Sbjct: 302 LCNIQDLQNVEANTIVDVLGVIKEVGPVDSIISKTTQKPFDKRDITLVDDTGYSVRLTLW 361
Query: 294 GDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELRE 353
G K D +++ K KV+DF+G+++ + S +PD EAH L+
Sbjct: 362 G--------KQATSFDATEESIVAFKDCKVSDFNGRNLSLLSSGSWSADPDIPEAHRLKG 413
Query: 354 WFDSGGKNAATV---SISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFI 410
W+DS G+ + + S+S AA G K++ KTV Q+K+E LG E+PD+ +++ I I
Sbjct: 414 WYDSMGRTQSFLTHKSMSSVGAATGRKDDF-KTVRQVKDENLGMGEQPDYFSLKGTIVAI 472
Query: 411 KSDSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQTGLT 469
K D+FCY +C + + CNKKVT G+ W+C++C+ D YRY L + D TG
Sbjct: 473 KQDNFCYPSC--LTDNPPCNKKVTDMGDGTWRCEKCDVTHDRARYRYNLGVMVSDHTGHL 530
Query: 470 WVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQ 529
WVT F + ++G A EL L+ D I + FR++ K + +GD
Sbjct: 531 WVTCFDDIANVVMGRTADELVSLQ---GDKAALDAIFEEASCQKLTFRVRAKMDTFGDMP 587
Query: 530 RVKITVIRADQVNYSSESRYLLDLI 554
RV+ + A +++ SE L +LI
Sbjct: 588 RVRYQAMSATPIDFKSEGHKLAELI 612
>gi|397580873|gb|EJK51733.1| hypothetical protein THAOC_29071 [Thalassiosira oceanica]
Length = 438
Score = 264 bits (674), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 149/453 (32%), Positives = 257/453 (56%), Gaps = 39/453 (8%)
Query: 124 YQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEV 183
Y RW I+A+V +K +R ++NA+G+G++FS ++LDS G +++ T F VD+FY IE
Sbjct: 2 YSNRWVIRAKVVSKSGVRTWSNAKGEGQLFSMEILDSAGTDVKCTFFKEAVDKFYNFIEE 61
Query: 184 GRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIES 243
RVY S G LK A +N K+++EI + ST++L D I + + F ++++E
Sbjct: 62 DRVYTFSGGRLKVANMQYNKCKSQFEITFDQNSTIELDQGGGDDI-RASYDFVKVADVER 120
Query: 244 AENNSIVDVIGIVISVN-PSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQ 302
++ N +D++G+V +V P+ + +K+G E + L ++D SG + LT+WGD NK +
Sbjct: 121 SQPNDYIDILGVVKAVGEPATIVSKKSGKELTKCELTVEDDSGAEITLTMWGDTANKARE 180
Query: 303 KLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDS-GGKN 361
+ G PV++ K +V+D+ G+ T+ + +NP+ +A L +W+ + GGK+
Sbjct: 181 RF------GGTPVVAFKRARVSDYGGR---TLSGSGFSVNPNIPQAAALSQWWAANGGKS 231
Query: 362 AATVSISREIAAGGAKN-------EIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSD- 413
A SR +++GG E+ K V+ IK++ LG +EKPD+++ +A ITF+K D
Sbjct: 232 A-----SRSLSSGGMGGNRGPDPFEMRKAVNSIKSDQLGYNEKPDYLSFKATITFLKKDK 286
Query: 414 ----SFCYTACPLMIGDRQCNK--KVTQ-SGNRWQCDRCNQEIDECDYRYLLQAQIQDQT 466
YTAC G C K TQ S W CD+C Q + +C R++ + D T
Sbjct: 287 QGDEGAWYTACA--NGGDPCKNMYKATQTSDGNWHCDKCQQTLPDCVRRFIFSGTVADDT 344
Query: 467 GLTWVTAFQESGEEILGCPAKELYMLKYELQD----DVRFGEIIRSRVFNQYLFRLKIKE 522
+W++ F + EE+LG + K D DV R+ +++++F+ K+++
Sbjct: 345 STSWISVFNQQAEELLGGATADDLYDKITSGDGGGRDVYDSAFARA-TYSEWIFKCKVRQ 403
Query: 523 ELYGDEQRVKITVIRADQVNYSSESRYLLDLIS 555
E+ GDEQR+K +++ A ++Y++ESR LL ++
Sbjct: 404 EMVGDEQRIKTSLVAAHPLDYAAESRSLLQALA 436
>gi|112983132|ref|NP_001036938.1| replication protein A1 [Bombyx mori]
gi|55700848|dbj|BAD69789.1| Replication protein A large subunit [Bombyx mori]
Length = 598
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 156/432 (36%), Positives = 249/432 (57%), Gaps = 22/432 (5%)
Query: 117 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDR 176
PI++L+PYQ +W I+ARV +K +R ++NA+G+ K+FS D + GEIR T F D
Sbjct: 165 PISSLSPYQNKWVIRARVMSKTPIRTWSNAKGERKLFSMYPCD-ETGEIRATAFKNECDT 223
Query: 177 FYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFR 236
FY++I+V +VY IS+ ++K A K F LKN++E+ A + V ++ ++P Q+ F
Sbjct: 224 FYDMIQVDKVYYISRCAIKTANKKFTTLKNDYEMTFTAETVVGEYVGDESAVPTVQYDFL 283
Query: 237 HISEIESAENNSIVDVIGIVISVNPSVPILRKN-GMETQRRILNLKDTSGRSVELTLWGD 295
ISEI + E +++D+I + S + + K+ G ++R + L D SG +V LTLWG+
Sbjct: 284 PISEIANKETETLIDLIDVCKSASDVQELTAKSTGKLLKKREVMLVDASGGAVTLTLWGN 343
Query: 296 FCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSG-KSIGTIPSTQLFINPDFAEAHELREW 354
E +K + + P+L+VK ++ +F+G KS+ + ST L +NPD EAH+LR W
Sbjct: 344 ----EAEKFEGNTN----PILAVKGARLTEFNGSKSLSCLSSTMLRLNPDVPEAHKLRGW 395
Query: 355 FDSGGKNAATVSISREIA--AGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKS 412
+D+GG +A V+IS + GG+ I + S+ ++ LG EK D+ ++ +TF S
Sbjct: 396 YDNGGADADIVNISAKSGNFTGGSNEWI--SFSEAESRQLGTGEKGDYYSLLGVLTFTFS 453
Query: 413 DSFCYTACPLMIGDRQCNKK-VTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWV 471
++ Y ACP QCNKK V Q ++C++CN+E +R LL A + D TG V
Sbjct: 454 ENAVYKACP----QEQCNKKLVDQENGLFRCEKCNREYPNYKHRILLAANVSDPTGDQRV 509
Query: 472 TAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRV 531
T F E+ E +LG A+E+ L D + +I F ++F+ + K E + DE R+
Sbjct: 510 TLFNEAAETMLGKSAEEIARLSE--YDKNEYNKIFDEVKFKTFVFKFRTKMENFNDESRL 567
Query: 532 KITVIRADQVNY 543
K TV+ V+Y
Sbjct: 568 KTTVVNVQPVDY 579
>gi|401827683|ref|XP_003888134.1| replication factor A protein 1 [Encephalitozoon hellem ATCC 50504]
gi|392999334|gb|AFM99153.1| replication factor A protein 1 [Encephalitozoon hellem ATCC 50504]
Length = 572
Score = 263 bits (673), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 161/443 (36%), Positives = 253/443 (57%), Gaps = 39/443 (8%)
Query: 118 IAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDG-GEIRVTCFNAVVDR 176
I LNP+ +W IK RV KGD+RR+ N +G+GKVF+F+L SDG ++++ CF+ VD
Sbjct: 166 INMLNPFHNKWVIKGRVVVKGDIRRFTNQKGEGKVFNFEL--SDGTAQVKIICFSDCVDI 223
Query: 177 FYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFR 236
F+ I+EVG+VY ++KG++K A K ++ ++EI L+ S V DD P+ F+F
Sbjct: 224 FFPIVEVGKVYTVTKGTVKMANKQYSTNPFDYEIILDKNSEVRCAA--DDGSPRYFFNFT 281
Query: 237 HISEIESAENNSIVDVIGIVI-SVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGD 295
IS+I + ++ DVIG+V + PS ++R E +R + L D SG SV LTLW
Sbjct: 282 KISDI--SLGSAYCDVIGVVKEAYGPSTVMVRSTQNELLKRDVVLVDESG-SVRLTLW-- 336
Query: 296 FCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWF 355
GQK + +D+ V+ +KS KV++F+G SI T +Q+ +NPD +EAHEL W+
Sbjct: 337 -----GQKAE--IDIEEGVVIGLKSIKVSEFNGISISTTGGSQVVVNPDISEAHELAGWY 389
Query: 356 DSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSF 415
S GKN V++ R K E + V ++K L S T++ + F+K D+
Sbjct: 390 QSIGKNMQ-VTLPR-------KEEKRRLVQEVKENELAYS------TIQGTVMFLKEDAL 435
Query: 416 CYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAF 474
Y +C CNKKV + G ++C+RCN ++C+YRY++ + D TG WV+ F
Sbjct: 436 WYASCK----GEGCNKKVMIEEGGNYRCERCNMTYEDCNYRYMVTMHLGDFTGQIWVSLF 491
Query: 475 QESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKIT 534
E+ G AKE+ + E +++ +IR F + LFR+K K++ Y DE R++ +
Sbjct: 492 DEAATGFFGISAKEMKEMSEESPAELQ--ALIRRMCFRECLFRIKSKQDNYNDELRMRYS 549
Query: 535 VIRADQVNYSSESRYLLDLISKS 557
+ ++ ES+ LLD+I K+
Sbjct: 550 GLSVSALDILKESKRLLDVIEKA 572
>gi|330930966|ref|XP_003303215.1| hypothetical protein PTT_15345 [Pyrenophora teres f. teres 0-1]
gi|311320921|gb|EFQ88698.1| hypothetical protein PTT_15345 [Pyrenophora teres f. teres 0-1]
Length = 587
Score = 263 bits (672), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 170/503 (33%), Positives = 267/503 (53%), Gaps = 40/503 (7%)
Query: 63 PGSFSTPN-SGTFRAPNAGSIVRSFQPTVQPPYQPPPNFRNHGPILKNEAPARIIPIAAL 121
P + S N G+ AP RS P +Q P +H + PI +L
Sbjct: 105 PAAISGNNFYGSKPAPAPAQAQRSL-----PTHQSNPGTASH---------PNLYPIESL 150
Query: 122 NPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEII 181
+PY +W I+AR TAK D++ + NA+G GK+FS +LLD D GEIR T F V D+ Y I
Sbjct: 151 SPYAHKWTIRARCTAKSDMKEWTNAKGAGKLFSVNLLD-DTGEIRATAFTEVADKLYPIF 209
Query: 182 EVGRVYLISKGS-LKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISE 240
EVG VY IS + A+K F++L N++E+ E + V+ E+ ++ P+ +F+F I +
Sbjct: 210 EVGTVYYISAPCRVTLAKKQFSNLPNDYELQFERDTEVEKA-EDQENKPQIRFNFTKIGD 268
Query: 241 IESAENNSIVDVIGIVISVNPSVPILRKN-GMETQRRILNLKDTSGRSVELTLWGDFCNK 299
+ S E ++ +D IG++ V I K + +R L L D S SV LT+WG
Sbjct: 269 LSSVEKDTTIDTIGVLKEVADVTTITSKTTNKDFSKRELTLADDSQTSVRLTIWG----- 323
Query: 300 EGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGG 359
K E D +++ K KV+DF G+S+ + S + ++PD +AH LR WFD+ G
Sbjct: 324 ---KTAESFDAPLESIIAFKGVKVSDFGGRSLSLLSSGSMMVDPDIDDAHRLRGWFDAVG 380
Query: 360 KNAATVSISREI--AAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCY 417
+N AT S + + AAGG+KN+ K +S I E + P ++++RA + ++K+ + Y
Sbjct: 381 QN-ATFSTHQNMASAAGGSKNDA-KIISVIMEEEAYLQDTPTYMSLRASVLYVKNTTVAY 438
Query: 418 TACPLMIGDRQCNKKVTQS--GNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQ 475
AC + CNKKV + GN W C++C E YRY+L + D TG W++ F
Sbjct: 439 PAC----STQGCNKKVIEDNPGN-WWCEKCQASFPEPQYRYVLSVNVGDHTGTLWLSCFD 493
Query: 476 ESGEEILGCPAKELYMLKYELQDD--VRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKI 533
E+G EI+G A E LK + +++ F ++ + FR++ K E Y D+ + +
Sbjct: 494 EAGAEIVGMSANEAMKLKMDDEENGTTNFITAMQEATCQTFNFRVRAKMETYQDQPKPRY 553
Query: 534 TVIRADQVNYSSESRYLLDLISK 556
V+ ++NY+ E+ L LI +
Sbjct: 554 QVLSLHKLNYAQEANKLAQLIKQ 576
>gi|378731776|gb|EHY58235.1| replication factor A1 [Exophiala dermatitidis NIH/UT8656]
Length = 608
Score = 261 bits (667), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 159/470 (33%), Positives = 269/470 (57%), Gaps = 24/470 (5%)
Query: 95 QPPPN--FRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKV 152
QP N +H + A A I PI A++PY +W IKAR T+K +++ ++N G+GK+
Sbjct: 151 QPKQNRSMPSHTKPSSSSAHANIYPIEAISPYSNKWTIKARCTSKSEIKTWHNRNGEGKL 210
Query: 153 FSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGS-LKPAQKNFNHLKNEWEIF 211
FS +LLD + GEIR T FN D+ Y++ + G+VY IS + A+K F++L N++E+
Sbjct: 211 FSVNLLD-ESGEIRATGFNDQCDQLYDVFQEGQVYYISSPCRVTFAKKQFSNLANDYELH 269
Query: 212 LEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRK-NG 270
E + V+ EE D +P+ +++F +I++++S E ++ +D+I I+ V K G
Sbjct: 270 FERDTVVEKA-EEQDGVPQVRYNFTNIADLQSVEKDTTIDIIAILKDVGEVGQATSKTTG 328
Query: 271 METQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKS 330
++R L L D +G SV +T+WG K +DV V+ K KV+DF G+S
Sbjct: 329 KPYEKRELTLVDNTGYSVRMTIWG--------KTAASLDVQPGSVVVFKGVKVSDFGGRS 380
Query: 331 IGTIPSTQLFINPDFAEAHELREWFDSG---GKNAATVSISREIAAGGAKNEIHKTVSQI 387
+ + S + NPD EAH+L+ W++S G + ++ ++ G++++ KT+SQ+
Sbjct: 381 LSLLSSGSMTANPDMPEAHKLKGWWESHDRPGNFSTHENVQGAVSGVGSRSDPFKTISQV 440
Query: 388 KNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQ-SGNRWQCDRCN 446
K E LG SEKPD+ +++A + +IK + F Y AC L G CN+KV + +W+C++C+
Sbjct: 441 KEEQLGMSEKPDFFSIKATVHYIKQEPFAYPAC-LSEG---CNRKVVEIDPGQWRCEKCD 496
Query: 447 QEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEII 506
+ +YRY++ A + D TG WV F ++G +LG A EL +K E Q V EI
Sbjct: 497 TTHPKPEYRYIISANVSDHTGQLWVNCFDDTGRLLLGRTADELMAIKDEDQKQVE--EIF 554
Query: 507 RSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
+ + ++ K + + + ++QRV+ V A +++ +ES L+ LI +
Sbjct: 555 SEANYKTWNWKCKARLDNFQEQQRVRYQVTSAAPLDFVTESNKLITLIKQ 604
>gi|156048933|ref|XP_001590433.1| hypothetical protein SS1G_08173 [Sclerotinia sclerotiorum 1980]
gi|154692572|gb|EDN92310.1| hypothetical protein SS1G_08173 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 609
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 157/448 (35%), Positives = 254/448 (56%), Gaps = 22/448 (4%)
Query: 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
A I PI +L+PY +W IKARVT+K D+R ++ +GK+FS +LLD + GEI+ T FN
Sbjct: 172 ATIYPIESLSPYAHKWTIKARVTSKSDIRTWHKQNSEGKLFSVNLLD-ESGEIKATGFNE 230
Query: 173 VVDRFYEIIEVGRVYLI-SKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQ 231
D YE+ + G VY I S ++ A+K F+++ N++E+ E + V+ E+ D++P+
Sbjct: 231 QCDALYELFQEGNVYYITSPCRVQIAKKQFSNINNDYELMFERDTLVEKA-EDQDNVPQV 289
Query: 232 QFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGME-TQRRILNLKDTSGRSVEL 290
+++F +I ++++ E +S VD+I ++ V + I+ K + +R L L D +G SV L
Sbjct: 290 RYNFSNIGDLQTIEKDSTVDLIAVLKEVGETSEIMSKTTNKPYSKRELTLVDDTGYSVRL 349
Query: 291 TLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHE 350
T+WG K D +++ K KV+DF G+S+ + S + +PD EAH
Sbjct: 350 TVWG--------KTATSFDASPESIVAFKGVKVSDFGGRSLSLLSSGSMSFDPDIQEAHR 401
Query: 351 LREWFDSGGK--NAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEK-PDWVTVRAFI 407
L+ W+DS G+ N A+ S A G + + KTV+QIK+EGLG SE+ D+ + RA I
Sbjct: 402 LKGWYDSQGRTENFASHSNMASAGAAGGRQDPLKTVAQIKDEGLGMSEENTDYFSTRATI 461
Query: 408 TFIKSDSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQT 466
+IK ++FCY +C + C+KKV + + W+C++CNQ + +YRY+L + D T
Sbjct: 462 VYIKQETFCYPSCI----NENCSKKVVEENDGTWRCEKCNQTHPKPEYRYILSLNVNDHT 517
Query: 467 GLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYG 526
G W+TAF E G I+G A E+ LK D + F+ + K + +
Sbjct: 518 GQLWLTAFDEVGRLIMGMSADEMMELKE--NDQSALEKAFDDANCKMMTFKCRAKTDNFK 575
Query: 527 DEQRVKITVIRADQVNYSSESRYLLDLI 554
++ RV+ V A VNY +++ L +LI
Sbjct: 576 EQARVRYQVNSASAVNYGADALKLAELI 603
>gi|452004612|gb|EMD97068.1| hypothetical protein COCHEDRAFT_1189989 [Cochliobolus
heterostrophus C5]
Length = 611
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 155/472 (32%), Positives = 258/472 (54%), Gaps = 23/472 (4%)
Query: 92 PPYQPPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGK 151
P QP + H + + PI +L+PY +W I+AR T K D++ ++N +G GK
Sbjct: 145 PAPQPQRSLPTHQSNPGTSSHPHLYPIESLSPYAHKWTIRARCTHKSDMKEWHNQKGTGK 204
Query: 152 VFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGS-LKPAQKNFNHLKNEWEI 210
+FS +LLD D GEIR T F V D+ + + E G VY IS + A+KNF++L N++E+
Sbjct: 205 LFSVNLLD-DTGEIRATAFTEVADKLFPVFEEGVVYYISAPCRVTLAKKNFSNLPNDYEL 263
Query: 211 FLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKN- 269
E + V+ E+ D+ P+ +F+F I ++ S E ++ +D IG++ V I KN
Sbjct: 264 QFERDTEVEKA-EDQDNKPQIRFNFTKIGDLTSVEKDTTIDTIGVLKEVAEVTTITSKNT 322
Query: 270 GMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGK 329
+ +R L L D S SV LT+WG K E DV +++ K KV+DF G+
Sbjct: 323 NKDFSKRELTLADDSQTSVRLTIWG--------KTAESFDVPLESIVAFKGVKVSDFGGR 374
Query: 330 SIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAA--GGAKNEIHKTVSQI 387
S+ + S + ++PD EAH+LR WF++ G+N AT S + + + GG+KN+ K +S I
Sbjct: 375 SLSLLSSGSMMVDPDIDEAHKLRGWFNAVGQN-ATFSTHQSMVSNTGGSKNDA-KPISAI 432
Query: 388 KNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSG-NRWQCDRCN 446
E + P ++++RA + +++ +F Y AC + CNKKV + W C++C
Sbjct: 433 IEEEAYLQDTPSYMSLRASVVYVRDSTFAYPAC----STQGCNKKVIEENPGSWWCEKCQ 488
Query: 447 QEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDD--VRFGE 504
E +YRY+L A + D TG W++ F E+G+ I+G A E +K + +++ F
Sbjct: 489 AAFPEPNYRYVLSANVGDHTGTLWLSCFDEAGQAIIGVSANEAMKMKMDDEENGTTNFRN 548
Query: 505 IIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
+++ + FR++ K E Y D+ + + V+ +N++ E+ L LI +
Sbjct: 549 VMQEATCKTFNFRVRAKMETYQDQPKPRYQVMNIYPLNFAQEANKLAQLIKQ 600
>gi|452819200|gb|EME26268.1| replication factor A1 [Galdieria sulphuraria]
Length = 648
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 163/467 (34%), Positives = 253/467 (54%), Gaps = 37/467 (7%)
Query: 104 GPILKNE--APARIIP---IAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL 158
GP++K E + + P IA+LNPYQ +W IK RV+++G++R Y NA+G+G VFSF+++
Sbjct: 197 GPVVKMEPFVGSNLEPVQSIASLNPYQNKWIIKGRVSSRGEIRHYQNAKGEGSVFSFEIM 256
Query: 159 DSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTV 218
DS I+VT F Y++IE+G+VY ISKG LKPA K FN E+E+ + + V
Sbjct: 257 DSTAS-IKVTAFRENASSLYKLIEIGKVYRISKGVLKPADKRFNKTSFEYEMIADNNTEV 315
Query: 219 DLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNP-SVPILRKNGMETQRRI 277
+ E+ +P F F I+ +E+ DV+GIV V+ S + R G+ +R
Sbjct: 316 -VPVEDVGEVPNVIFHFTKIANLENIVAGQFCDVLGIVKDVSELSSVVSRTTGITLAKRT 374
Query: 278 LNLKDTSGRSVELTLWGDFC-----NKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIG 332
+ L D S +++ LTLW D + EG P+L K + DF+G S+
Sbjct: 375 VVLMDDSLKTIRLTLWKDIAENLLHSSEGN-----------PILLCKGVRRGDFNGISLD 423
Query: 333 TIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGL 392
+ +NPD AEAHELR W+++ GK+ T S+ + + KT+ Q E +
Sbjct: 424 ATVQSCFEVNPDIAEAHELRGWYETTGKHQETSSLEGATSLSLGNTKERKTILQASEEDI 483
Query: 393 GRS-EKPDWV--TVRAFITFIKSD-SFCYTACPLMIGDRQCNKKVTQ-SGNRWQCDRCNQ 447
+ P V VR ++ +I+ + + YTA P NKKVT+ NRW CD +
Sbjct: 484 PKLINDPRGVQFIVRGYLHYIRKEGTLWYTASP------DDNKKVTKLDENRWVCDATGK 537
Query: 448 EIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIR 507
E C+YRY+L IQD TG AF + G ++G A+EL + YE +D F II
Sbjct: 538 EYSYCNYRYILSVAIQDATGSLNANAFDDVGSRLIGRSAEELAAI-YE-RDRAEFDAIID 595
Query: 508 SRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLI 554
+F ++FR++ K+ + DE R++ ++ + +++SSES+ LL+ I
Sbjct: 596 DVLFKPFIFRIRAKQNTWNDELRLRYHIVNVEPIHFSSESQLLLNEI 642
>gi|322783307|gb|EFZ10882.1| hypothetical protein SINV_05412 [Solenopsis invicta]
Length = 587
Score = 260 bits (664), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 157/449 (34%), Positives = 247/449 (55%), Gaps = 24/449 (5%)
Query: 114 RIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAV 173
R IAAL+PYQ RW IKARV K ++ ++N+RG+GK FS DL+D GEIR T F +
Sbjct: 146 RTTQIAALSPYQNRWVIKARVINKSPIKTWSNSRGEGKFFSMDLIDK-SGEIRCTAFKEM 204
Query: 174 VDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQF 233
VD+FY++I G VY IS+ +LK A K +N +KN++E+ + + + + C + + IP Q+
Sbjct: 205 VDKFYDLIVAGNVYYISRCTLKMANKQYNTMKNDYEMSVTSDTGIVPCHDNSNDIPTLQY 264
Query: 234 SFRHISEIESAENNSIVDVIGIVISVNPSVPIL-RKNGMETQRRILNLKDTSGRSVELTL 292
+F IS++ES E N ++DV+G+V ++ R G E +R +++ D SG V +TL
Sbjct: 265 NFSPISQVESKEKNDLLDVLGVVTTIGDVQHFTARATGRELIKRDISIVDDSGTMVTVTL 324
Query: 293 WGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSG-KSIGTIPSTQLFINPDFAEAHEL 351
W + E D ++++K V +F+G K++ S+ + +PD EAH L
Sbjct: 325 W--------RTQAEEFDASNNTIIAIKRASVGEFNGRKNLSLTMSSIIEKDPDIPEAHRL 376
Query: 352 REWFDSGGKNAATVSISREIAAGGAK--NEIHKTVSQIKNEGLG-RSEKPDWVTVRAFIT 408
R W+ + G + S+SR GG+ N T + + LG + PD TV A I
Sbjct: 377 RGWYTAVGHSETAKSLSR---VGGSTDFNGPLYTFQEATDARLGEKMNLPDSFTVVATIK 433
Query: 409 FIKSDSFCYTACPLMIGDRQCNKK-VTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTG 467
IK+++ Y ACP+ C KK + Q ++C++CN+E YR L ++ D TG
Sbjct: 434 QIKTENSLYRACPV----ENCKKKLIDQDNGIFRCEKCNKEYPNFTYRLLANMELADATG 489
Query: 468 LTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGD 527
W+TAF E E+ILG A+EL LK +D + + I F ++F L+ + E++ D
Sbjct: 490 SRWITAFNEEAEKILGMSAQELGELKENDKD--AYLQKIGEATFKTFMFNLEARSEVFQD 547
Query: 528 EQRVKITVIRADQVNYSSESRYLLDLISK 556
R+K +NY + +L+D +SK
Sbjct: 548 AMRIKHVCTSVRPINYKTYLPHLIDKVSK 576
>gi|403416914|emb|CCM03614.1| predicted protein [Fibroporia radiculosa]
Length = 609
Score = 260 bits (664), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 159/493 (32%), Positives = 260/493 (52%), Gaps = 37/493 (7%)
Query: 76 APNAGSIVRSFQP-----TVQPPYQPPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAI 130
AP A + + +P QPP Q N RN + PI +L+PYQ W I
Sbjct: 139 APAASTSTMTARPPPAALAQQPPRQQTRNGRN-----------TVYPIESLSPYQNHWMI 187
Query: 131 KARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLIS 190
KARV+ K D++ ++N RG+GK+FS L+D + GEI+ T FN VD Y+ + G+VY +S
Sbjct: 188 KARVSQKSDVKTWSNQRGEGKLFSVTLMD-ETGEIKGTGFNNAVDELYDKFQEGKVYFVS 246
Query: 191 KGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIV 250
K + A+K F++++NE+E+ E + V+ C + ++P +++F I ++ +S+
Sbjct: 247 KARVNLAKKKFSNVQNEYELTFERNTEVEEC-HDVTNVPTVRYNFVDIGKLSEITKDSVC 305
Query: 251 DVIGIVISVNPSVPILRKNGMET-QRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVD 309
DVIG+V V I K +T +R L L D SG SV LTLWG K E
Sbjct: 306 DVIGVVKDVGQLGEITSKTTNKTVSKRDLTLVDRSGFSVRLTLWG--------KQAETFV 357
Query: 310 VGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKN---AATVS 366
PV++ K KV DF G+++ S+ + +NPD +AH LR WFD+ G + A S
Sbjct: 358 AEDQPVIAFKGVKVGDFGGRTLSMFSSSTMQVNPDIPDAHALRGWFDAAGVDQNYQAQSS 417
Query: 367 ISREIAAGGAKNEIHKT--VSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMI 424
+ E + V+ +K +G S+KPD+ RA I +K+++ Y AC
Sbjct: 418 SGGGGGGSYGQFERAEILPVNTVKEREMGMSDKPDFFLCRATIMHLKTENIAYPACHT-- 475
Query: 425 GDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGC 484
CNKKV + + W+C+RC++ ++ YRY++ D +G W+ F ++G+ I
Sbjct: 476 --DGCNKKVIEGHDGWRCERCDRSWEKPQYRYIVSLAAADYSGQAWLQGFNDAGQVIFDS 533
Query: 485 PAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYS 544
+ + +++ + +DDV F +I+ + Y F + K+E + D R++ ++ R V+Y
Sbjct: 534 KSAD-EVVEVKDRDDVAFNKIVEQAMGKTYNFVCRAKQETFNDSTRIRYSIQRILPVSYK 592
Query: 545 SESRYLLDLISKS 557
E YL +L+ +S
Sbjct: 593 EEGAYLANLLRRS 605
>gi|389641383|ref|XP_003718324.1| replication factor-A protein 1 [Magnaporthe oryzae 70-15]
gi|351640877|gb|EHA48740.1| replication factor-A protein 1 [Magnaporthe oryzae 70-15]
gi|440466778|gb|ELQ36022.1| replication factor-A protein 1 [Magnaporthe oryzae Y34]
gi|440480262|gb|ELQ60936.1| replication factor-A protein 1 [Magnaporthe oryzae P131]
Length = 610
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 153/447 (34%), Positives = 254/447 (56%), Gaps = 23/447 (5%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
I PI +++PYQ +W IKARV+ K D+R ++ A G+GK+FS +LLD + GEI+ T FN
Sbjct: 179 IYPIESISPYQHKWTIKARVSQKSDIRTWHKASGEGKLFSVNLLD-ETGEIKATGFNDQC 237
Query: 175 DRFYEIIEVGRVYLISK-GSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQF 233
D+FY+I++ G+VY IS ++ A+K F +L N++E+ E + ++ E+ S+P+ +F
Sbjct: 238 DKFYDILQEGQVYYISTPCRVQMAKKQFTNLPNDYELTFEDGTQIEK-AEDQSSVPQVRF 296
Query: 234 SFRHISEIESAENNSIVDVIGIVISVNPSVPILRK-NGMETQRRILNLKDTSGRSVELTL 292
+F +I E++ E ++ VDVIG++ V I K +G +R L L D SG SV +T+
Sbjct: 297 NFCNIQELQEVEKDATVDVIGVLKDVADVTQITSKASGKFFDKRELTLVDDSGYSVRMTI 356
Query: 293 WGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELR 352
WG K + D V++ K KV DF G+S+ + S + ++PD EAH L+
Sbjct: 357 WG--------KTAQNFDAKSESVVAFKGAKVGDFGGRSLSLLSSGTMTVDPDIPEAHRLK 408
Query: 353 EWFDSGGKNAATVSI-SREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIK 411
WFDS G+N + S +A + + T+ ++K + LG + + ++A + +I+
Sbjct: 409 GWFDSSGRNDNFSTFNSNSVAGATGRQDQILTIHKVKEDNLGVDDVV-YFALKATVVYIR 467
Query: 412 SDSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQTGLTW 470
++F Y +C + C+KKVT G+ W+C++C+ +YRY++ + D TG W
Sbjct: 468 QENFAYPSCL----NEGCSKKVTDLGDGSWRCEKCDVNHPRPEYRYIMSVNVNDHTGQLW 523
Query: 471 VTAFQESGEEILGCPAKELYMLKYE-LQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQ 529
++ F + G I+G A EL LK E + R E R + FR + K + +GD Q
Sbjct: 524 LSCFDDVGRIIMGKSADELMALKDENFEAFTREFENANCRKLS---FRCRAKMDTFGDNQ 580
Query: 530 RVKITVIRADQVNYSSESRYLLDLISK 556
RV+ V+ A ++++ SE+ L DLI +
Sbjct: 581 RVRYQVMGATKMDWKSEAARLADLIKQ 607
>gi|50553160|ref|XP_503990.1| YALI0E15642p [Yarrowia lipolytica]
gi|49649859|emb|CAG79583.1| YALI0E15642p [Yarrowia lipolytica CLIB122]
Length = 589
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 139/437 (31%), Positives = 242/437 (55%), Gaps = 23/437 (5%)
Query: 112 PARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFN 171
PA ++PI L+PYQ +WAIK RVT+K D ++++N +G+G++F+ +D + GEIR T FN
Sbjct: 156 PATVMPIERLSPYQNKWAIKVRVTSKADKKKFSNTKGEGQLFNVTFID-ETGEIRATGFN 214
Query: 172 AVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWE-IFLEATSTVDLCTEEDDSIPK 230
VD+FY ++E G+VY +++ + A K F+++ N++E +F T + E +IP
Sbjct: 215 QEVDKFYPMLEEGQVYYVTQCRVSMANKKFSNVNNDYELVFGRDTVIIQADEAEAAAIPT 274
Query: 231 QQFSFRHISEIESAENNSIVDVIGIVISVNP-SVPILRKNGMETQRRILNLKDTSGRSVE 289
+SF + +++ E + VDV+G+V +V P + + G +RR L L D SG +
Sbjct: 275 ANYSFVTLDKLQDVEVGNNVDVLGVVQNVGPLEDGVAKATGNPYKRRNLMLGDKSGFATR 334
Query: 290 LTLWGDFCNKEGQKLQEMVDVGFFPV---LSVKSGKVNDFSGKSIGTIPSTQLFINPDFA 346
LT +G+ D G PV +++K +V DF+G+++ T S+ + + P
Sbjct: 335 LTFFGEKATS--------FDEGTVPVGTIIAIKGARVGDFNGRNLSTSHSSTIAVEPAID 386
Query: 347 EAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAF 406
E + L+ W+ S GK + +++ + T + G+SEKPD+ T++A+
Sbjct: 387 ETYALKGWYASEGKQTSF----KQLQTTTTNKPVAATPIDVATSSYGQSEKPDYYTLQAW 442
Query: 407 ITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQT 466
+ +++ +F Y AC CNKKV + G+ W+C++C + +D+ YRY+L + D T
Sbjct: 443 VVHVRTGNFAYPACQT----PDCNKKVVEHGDEWRCEKCEKNMDKPLYRYILSINVGDAT 498
Query: 467 GLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYG 526
G W+TAF E E I+G A +L ++ DD F + ++ QY R + K+E Y
Sbjct: 499 GSMWLTAFNEPAEVIMGMTADQLTEIQTSQGDD-EFEQAVQKVTGKQYTLRCRSKQEFYN 557
Query: 527 DEQRVKITVIRADQVNY 543
+E + + V+ A ++Y
Sbjct: 558 EESKARHQVLTAQALDY 574
>gi|396498991|ref|XP_003845364.1| similar to replication protein A 70 kDa DNA-binding subunit
[Leptosphaeria maculans JN3]
gi|312221945|emb|CBY01885.1| similar to replication protein A 70 kDa DNA-binding subunit
[Leptosphaeria maculans JN3]
Length = 611
Score = 259 bits (662), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 165/492 (33%), Positives = 265/492 (53%), Gaps = 37/492 (7%)
Query: 72 GTFRAPNAGSIVRSFQPTVQPPYQPPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIK 131
G AP A + RS P +Q P +H + PI +L+PY +W I+
Sbjct: 139 GNKPAPAAQAPQRSL-----PVHQSNPGTSSH---------PHLYPIESLSPYAHKWTIR 184
Query: 132 ARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISK 191
AR T+K D++ ++NA+G GK+FS +LLD D GEIR T F V D+ + + E G VY IS
Sbjct: 185 ARCTSKSDMKEWHNAKGSGKLFSVNLLD-DTGEIRATAFTEVADKLFPVFEEGVVYYISA 243
Query: 192 GS-LKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIV 250
+ A+KNF++L N++E+ E + V+ E+ ++ P+ +F+F I +++S E +S +
Sbjct: 244 PCRVTLAKKNFSNLPNDYELQFERDTEVEKA-EDQENKPQIRFNFTKIGDLDSVEKDSTI 302
Query: 251 DVIGIVISVNPSVPILRKN-GMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVD 309
D IG++ V I KN + +R L L D S SV LT+WG K E +
Sbjct: 303 DTIGVLKEVGEVATITSKNTNKDFSKRELTLADDSQTSVRLTIWG--------KTAESFE 354
Query: 310 VGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISR 369
+L+ K KV+DF G+S+ + S + ++PD EAH+LR WF++ G+N AT S
Sbjct: 355 APLESILAFKGVKVSDFGGRSLSLLSSGSMMVDPDIDEAHKLRGWFNAVGQN-ATFSTHN 413
Query: 370 EIA--AGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDR 427
+A +GG+KNE K +SQI E + P ++++RA + ++K+ + Y AC
Sbjct: 414 NLASSSGGSKNE-SKLISQIMEEESYLQDTPTYLSLRASVVYVKNTTVAYPAC----STP 468
Query: 428 QCNKKVTQSG-NRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPA 486
CNKKV + W C++C + E YRY+L + D TG W++ F E+G+ I+G A
Sbjct: 469 GCNKKVIEENPGAWWCEKCQKTYPEPLYRYVLSVNVADHTGTLWLSCFDEAGQTIVGMSA 528
Query: 487 KELYMLKYELQDD--VRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYS 544
E +K + +D+ F ++ + FR++ K E Y D+ + + V+ +NY+
Sbjct: 529 NEAMKMKTDDEDNGTQNFLTAMQEATCKTFNFRVRGKMETYQDQPKPRYQVLNLYPLNYA 588
Query: 545 SESRYLLDLISK 556
E+ L LI +
Sbjct: 589 QEANKLAQLIKQ 600
>gi|258568498|ref|XP_002584993.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237906439|gb|EEP80840.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 561
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 154/449 (34%), Positives = 242/449 (53%), Gaps = 27/449 (6%)
Query: 93 PYQPPPNFRNHG----PILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARG 148
P P +NH P + A A I PI AL+PY +W IKAR T K ++ ++N G
Sbjct: 101 PQHSAPRQQNHQRASVPTMA-PAHANIYPIEALSPYSHKWTIKARCTNKSAIKTWHNRNG 159
Query: 149 DGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGS-LKPAQKNFNHLKNE 207
+G++F+ +LLD D GEIR T F D Y + E G VY IS ++ A++ F+++ N+
Sbjct: 160 EGRLFNVNLLD-DSGEIRATAFKEQCDLLYPLFEEGSVYYISSPCRVQMAKRGFSNVNND 218
Query: 208 WEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILR 267
+E+ E + ++ E +D +P+ +F+F +I ++S E + +D +G++ SV+ +
Sbjct: 219 YELTFEKDTVIEK-AENNDDVPQMRFNFTNIGGLQSVEKGTTIDFLGVLKSVDQVTEVPS 277
Query: 268 K-NGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDF 326
K G +R L L D +G SV LT+WG+ N DV V++ K KV+DF
Sbjct: 278 KATGKRYTKRELTLVDDTGFSVRLTIWGNMAN--------TFDVMPDSVIAFKGVKVSDF 329
Query: 327 SGKSIGTIPSTQLFINPDFAEAHELREWFDSGGK-NAATVSISREIAAG--GAKNEIHKT 383
G+S+ + S + +PD EAH+L+ W+D+ GK + T E A G G++ + KT
Sbjct: 330 GGRSLSLLSSGTITADPDIEEAHKLKGWYDAQGKFDQFTFHAFSENATGATGSRQDPPKT 389
Query: 384 VSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQ-SGNRWQC 442
+ ++++E LG SEKPD+ +RA + FIK D+ CY AC +CNKKV Q W C
Sbjct: 390 IVEVRDEQLGMSEKPDYFALRATVVFIKQDNICYPACV----QERCNKKVIQLDSGEWLC 445
Query: 443 DRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRF 502
+ C + + +YRY+L A + D TG WV F E G ++G A L +K DD
Sbjct: 446 EHCEKSTPQPEYRYILSANLSDHTGQLWVNCFDEVGRSLMGITANSLMEMKE--NDDKVA 503
Query: 503 GEIIRSRVFNQYLFRLKIKEELYGDEQRV 531
E I + F+ + K + + D +R+
Sbjct: 504 SEAILDANCKMWNFKCRAKLDNFQDTERL 532
>gi|320591361|gb|EFX03800.1| replication protein a DNA-binding subunit [Grosmannia clavigera
kw1407]
Length = 631
Score = 259 bits (661), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 151/456 (33%), Positives = 254/456 (55%), Gaps = 25/456 (5%)
Query: 109 NEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVT 168
N A I PI L+PY +W IKARVT+K ++R ++ + G+GK+FS +LLD + GEI+ T
Sbjct: 190 NAAHPNIYPIEGLSPYSHKWTIKARVTSKSEIRTWHKSSGEGKLFSVNLLD-ESGEIKAT 248
Query: 169 CFNAVVDRFYEIIEVGRVYLISK-GSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDS 227
FN D++Y++++ G VY IS + A+K F++L N++E+ E + ++ E+ S
Sbjct: 249 GFNEQCDQYYDLLQEGSVYYISSPCRVNIAKKQFSNLPNDYELSFERDTQIEKA-EDQSS 307
Query: 228 IPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRK-NGMETQRRILNLKDTSGR 286
+P+ +++F + ++S E ++++DVIG++ V I K +G ++R L L D S
Sbjct: 308 VPQVRYAFCTLQALQSVEKDAVIDVIGVLRDVGEVSSITSKSSGKPYEKRELTLVDDSSF 367
Query: 287 SVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFA 346
SV T+WG K D V++ K +V+DF G+S+ + S + I+PD
Sbjct: 368 SVRTTIWG--------KTAVAFDAKPESVIAFKGVRVSDFGGRSLSLLQSGVMSIDPDIT 419
Query: 347 EAHELREWFDSGGK----NAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVT 402
EAH L+ W+D+ G+ ++ AG + E KT++Q+++E +G E + T
Sbjct: 420 EAHHLKGWYDAAGRSENFSSHNSMGGMGGGAGSGRPEQVKTIAQVRDENIGMDETA-YFT 478
Query: 403 VRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQ 461
++A I FIK ++F Y AC C+KKV S + W+C++C+ + YRY +
Sbjct: 479 LKATIVFIKQETFAYPAC----SSDGCSKKVVSSSDGTWRCEKCDMNHPQALYRYTMMLN 534
Query: 462 IQDQTGLTWVTAFQESGEEILGC-PAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKI 520
+ D TG W+T F + G I+G A EL L+ E DD+ FG +Y FR++
Sbjct: 535 VNDHTGQLWLTCFDDVGRMIMGGRSADELTELREE--DDIAFGAEFEKANCRKYSFRVRA 592
Query: 521 KEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
K + +GD QR++ ++ A +++ SE L +LI +
Sbjct: 593 KMDTFGDAQRIRYQIVNAHPLDFKSEGHKLAELIHQ 628
>gi|396082253|gb|AFN83863.1| DNA replication factor A protein 1 [Encephalitozoon romaleae
SJ-2008]
Length = 573
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 160/448 (35%), Positives = 253/448 (56%), Gaps = 41/448 (9%)
Query: 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDG-GEIRVTCFN 171
+ I LNP+ +W IK RV K D+RR+ N +G+GKVF+F++ SDG ++++ CF+
Sbjct: 162 GEFVAINMLNPFYNKWTIKGRVVVKSDIRRFTNHKGEGKVFNFEI--SDGTAQVKIICFS 219
Query: 172 AVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQ 231
VD F+ I+EVG+VY+ISKG++K A K ++ ++EI L+ S V DD P+
Sbjct: 220 DCVDIFFPIVEVGKVYIISKGTVKTANKQYSTNPFDYEIILDKGSEVRCAA--DDGSPRY 277
Query: 232 QFSFRHISEIESAENNSIVDVIGIVISV-NPSVPILRKNGMETQRRILNLKDTSGRSVEL 290
F+F IS++ + ++ DVIG+V V +PS ++R E +R L D SG SV L
Sbjct: 278 FFNFVKISDL--SLGSTYCDVIGVVKEVYSPSTVMIRSTQNELLKRDAILVDESG-SVRL 334
Query: 291 TLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHE 350
TLWG + +D+ VL +KS KV++F+G +I T +Q+ +NPD EAHE
Sbjct: 335 TLWGP---------KAEIDIEGGMVLGLKSIKVSEFNGITISTTGGSQVVVNPDIPEAHE 385
Query: 351 LREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFI 410
L W+ S GK+ VS+ R K E + + ++K L S T++ + F+
Sbjct: 386 LAGWYQSIGKDMQ-VSLPR-------KEEKRRLIQEVKENELAYS------TIQGTVMFL 431
Query: 411 KSDSFCYTACPLMIGDRQCNKKVT--QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGL 468
K D+ YT+C CNKKV +SGN ++C+RCN ++C+YRY++ + D TG
Sbjct: 432 KEDALWYTSCK----GEGCNKKVAMEESGN-YRCERCNMTYEDCNYRYMVSMHLGDFTGQ 486
Query: 469 TWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDE 528
WV+ F E+ G A+E+ + E +++ +IR F + LFR+K K++ Y DE
Sbjct: 487 IWVSLFDEAASGFFGISAREMKEMSEESPTELQ--TLIRRMYFRECLFRIKSKQDSYNDE 544
Query: 529 QRVKITVIRADQVNYSSESRYLLDLISK 556
R++ + + ++ ES+ LLD+I K
Sbjct: 545 LRMRYSGLNVITLDILKESKRLLDVIEK 572
>gi|392512868|emb|CAD25779.2| DNA REPLICATION FACTOR A PROTEIN 1 [Encephalitozoon cuniculi GB-M1]
Length = 572
Score = 258 bits (659), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 160/450 (35%), Positives = 246/450 (54%), Gaps = 39/450 (8%)
Query: 110 EAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDG-GEIRVT 168
E I LNP+ +WAIK RV K D+RR+ N +G+GKVF+F++ SDG ++++
Sbjct: 158 EDEGEFTAINMLNPFHNKWAIKGRVVMKSDIRRFTNQKGEGKVFNFEV--SDGTAQVKII 215
Query: 169 CFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSI 228
CF+ VD F+ I+EVG+VY I+KG++K A K ++ ++EI L+ +S V DD
Sbjct: 216 CFSDCVDIFFPIVEVGKVYTIAKGTVKMANKQYSTNPFDYEIILDKSSEVHRAA--DDGS 273
Query: 229 PKQQFSFRHISEIESAENNSIVDVIGIVISV-NPSVPILRKNGMETQRRILNLKDTSGRS 287
PK F+F IS++ N+ D IG+V V PS ++R E +R L D G S
Sbjct: 274 PKYFFNFVKISDLTLG--NAYCDTIGVVKEVYAPSTVMVRSTQSELLKRDAVLVDDGG-S 330
Query: 288 VELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAE 347
V LTLWG K + ++ G VL++KS KV++F+G SI T +Q+ NPD AE
Sbjct: 331 VRLTLWG-------PKAELEIESGM--VLALKSIKVSEFNGISISTTGGSQVVTNPDIAE 381
Query: 348 AHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFI 407
AHEL W+ S GK+ RE E + + ++K L S TV+ +
Sbjct: 382 AHELEGWYQSIGKDMQVTLPRRE--------EKRRLIQEVKESDLTYS------TVQGTV 427
Query: 408 TFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQT 466
F+K D YT+C CNKKV + G ++C+RCN ++CDYRY++ + D +
Sbjct: 428 MFLKEDGLWYTSCK----GEGCNKKVVMEDGGCYRCERCNMTYEDCDYRYMVTMHLGDFS 483
Query: 467 GLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYG 526
G WV+ F E G A+E+ ++ E +++ +IR F + LFR+K K++ Y
Sbjct: 484 GQMWVSLFDEVATSFFGISAREMKVMSEEAPGELQ--ALIRRMYFRECLFRIKSKQDSYN 541
Query: 527 DEQRVKITVIRADQVNYSSESRYLLDLISK 556
DE R++ + + + ++ ES+ LL +I K
Sbjct: 542 DEIRMRYSGLSVENLDILKESKRLLGVIEK 571
>gi|19074669|ref|NP_586175.1| DNA REPLICATION FACTOR A PROTEIN 1 [Encephalitozoon cuniculi GB-M1]
Length = 623
Score = 258 bits (659), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 160/450 (35%), Positives = 246/450 (54%), Gaps = 39/450 (8%)
Query: 110 EAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDG-GEIRVT 168
E I LNP+ +WAIK RV K D+RR+ N +G+GKVF+F++ SDG ++++
Sbjct: 209 EDEGEFTAINMLNPFHNKWAIKGRVVMKSDIRRFTNQKGEGKVFNFEV--SDGTAQVKII 266
Query: 169 CFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSI 228
CF+ VD F+ I+EVG+VY I+KG++K A K ++ ++EI L+ +S V DD
Sbjct: 267 CFSDCVDIFFPIVEVGKVYTIAKGTVKMANKQYSTNPFDYEIILDKSSEVHRAA--DDGS 324
Query: 229 PKQQFSFRHISEIESAENNSIVDVIGIVISV-NPSVPILRKNGMETQRRILNLKDTSGRS 287
PK F+F IS++ N+ D IG+V V PS ++R E +R L D G S
Sbjct: 325 PKYFFNFVKISDL--TLGNAYCDTIGVVKEVYAPSTVMVRSTQSELLKRDAVLVDDGG-S 381
Query: 288 VELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAE 347
V LTLWG K + ++ G VL++KS KV++F+G SI T +Q+ NPD AE
Sbjct: 382 VRLTLWG-------PKAELEIESGM--VLALKSIKVSEFNGISISTTGGSQVVTNPDIAE 432
Query: 348 AHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFI 407
AHEL W+ S GK+ RE E + + ++K L S TV+ +
Sbjct: 433 AHELEGWYQSIGKDMQVTLPRRE--------EKRRLIQEVKESDLTYS------TVQGTV 478
Query: 408 TFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQT 466
F+K D YT+C CNKKV + G ++C+RCN ++CDYRY++ + D +
Sbjct: 479 MFLKEDGLWYTSCK----GEGCNKKVVMEDGGCYRCERCNMTYEDCDYRYMVTMHLGDFS 534
Query: 467 GLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYG 526
G WV+ F E G A+E+ ++ E +++ +IR F + LFR+K K++ Y
Sbjct: 535 GQMWVSLFDEVATSFFGISAREMKVMSEEAPGELQ--ALIRRMYFRECLFRIKSKQDSYN 592
Query: 527 DEQRVKITVIRADQVNYSSESRYLLDLISK 556
DE R++ + + + ++ ES+ LL +I K
Sbjct: 593 DEIRMRYSGLSVENLDILKESKRLLGVIEK 622
>gi|449329996|gb|AGE96262.1| DNA replication factor a protein 1 [Encephalitozoon cuniculi]
Length = 623
Score = 258 bits (658), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 160/450 (35%), Positives = 246/450 (54%), Gaps = 39/450 (8%)
Query: 110 EAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDG-GEIRVT 168
E I LNP+ +WAIK RV K D+RR+ N +G+GKVF+F++ SDG ++++
Sbjct: 209 EDEGEFTAINMLNPFHNKWAIKGRVVMKSDIRRFTNQKGEGKVFNFEV--SDGTAQVKII 266
Query: 169 CFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSI 228
CF+ VD F+ I+EVG+VY I+KG++K A K ++ ++EI L+ +S V DD
Sbjct: 267 CFSDCVDIFFPIVEVGKVYTIAKGTVKMANKQYSTNPFDYEIILDKSSEVHRAA--DDGS 324
Query: 229 PKQQFSFRHISEIESAENNSIVDVIGIVISV-NPSVPILRKNGMETQRRILNLKDTSGRS 287
PK F+F IS++ N+ D IG+V V PS ++R E +R L D G S
Sbjct: 325 PKYFFNFVKISDL--TLGNAYCDTIGVVKEVYAPSTVMVRSTQSELLKRDAVLVDDGG-S 381
Query: 288 VELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAE 347
V LTLWG K + ++ G VL++KS KV++F+G SI T +Q+ NPD AE
Sbjct: 382 VRLTLWG-------PKAELEIESGM--VLALKSIKVSEFNGISISTTGGSQVVTNPDIAE 432
Query: 348 AHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFI 407
AHEL W+ S GK+ RE E + + ++K L S TV+ +
Sbjct: 433 AHELAGWYQSIGKDMQVTLPRRE--------EKRRLIQEVKESDLTYS------TVQGTV 478
Query: 408 TFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQT 466
F+K D YT+C CNKKV + G ++C+RCN ++CDYRY++ + D +
Sbjct: 479 MFLKEDGLWYTSCK----GEGCNKKVVMEDGGCYRCERCNMTYEDCDYRYMVTMHLGDFS 534
Query: 467 GLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYG 526
G WV+ F E G A+E+ ++ E +++ +IR F + LFR+K K++ Y
Sbjct: 535 GQMWVSLFDEVATSFFGISAREMKVMSEEAPGELQ--ALIRRMYFRECLFRIKSKQDSYN 592
Query: 527 DEQRVKITVIRADQVNYSSESRYLLDLISK 556
DE R++ + + + ++ ES+ LL +I K
Sbjct: 593 DEIRMRYSGLSVENLDILKESKRLLGVIEK 622
>gi|154295413|ref|XP_001548142.1| hypothetical protein BC1G_13185 [Botryotinia fuckeliana B05.10]
Length = 595
Score = 258 bits (658), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 170/472 (36%), Positives = 262/472 (55%), Gaps = 37/472 (7%)
Query: 87 QPTVQPPYQPPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNA 146
QP Q P N GP + + A I PI +L+PY +W IKARVT+K D+R ++
Sbjct: 151 QPAAQDRALPSRN----GP-SSSSSHATIYPIESLSPYAHKWTIKARVTSKSDIRTWSKP 205
Query: 147 RGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLI-SKGSLKPAQKNFNHLK 205
+GK+FS +LLD + GEI+ T FN D YE + G VY I S ++ A+K F+++
Sbjct: 206 NSEGKLFSVNLLD-ESGEIKATGFNEQCDALYETFQEGSVYYITSPCRVQIAKKQFSNIN 264
Query: 206 NEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPI 265
N++E+ E + V+ E+ D++P+ +++F +I +++S E +S VD+I ++ V I
Sbjct: 265 NDYELMFERDTLVEK-AEDQDNVPQVRYNFSNIGDLQSIEKDSTVDLIAVLKEVGEISEI 323
Query: 266 LRKNGME-TQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVN 324
K + +R L L D +G SV LT+WG K D V++ K KV+
Sbjct: 324 TSKTTSKPYSKRELTLVDETGYSVRLTIWG--------KTATSFDASPESVVAFKGVKVS 375
Query: 325 DFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTV 384
DF G+S+ + S + +PD EAH+L+ G N A+ AAGG ++ I KT+
Sbjct: 376 DFGGRSLSLLSSGSMSFDPDIQEAHKLK------GCNLASAG-----AAGGRQDPI-KTI 423
Query: 385 SQIKNEGLGRSEK-PDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQC 442
+Q+K+EGLG SE+ D+ + RA I +IK D+FCY AC + CNKKV Q+ W+C
Sbjct: 424 AQVKDEGLGMSEENTDYFSSRATIVYIKQDNFCYPACL----NENCNKKVVDQNDGTWRC 479
Query: 443 DRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRF 502
++CNQ + +YRY+L + D TG W+TAF E G I+G A EL LK D
Sbjct: 480 EKCNQSHPKPEYRYILALNVNDHTGQMWLTAFDEVGRLIMGKSADELMELKE--NDPPAM 537
Query: 503 GEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLI 554
+ F+++ K + Y D+ RV+ +V+ A VNY++++ L +LI
Sbjct: 538 ERVFEDANCKMMTFKVRCKTDTYQDQARVRYSVMSALAVNYAADALKLAELI 589
>gi|169600091|ref|XP_001793468.1| hypothetical protein SNOG_02875 [Phaeosphaeria nodorum SN15]
gi|160705373|gb|EAT89606.2| hypothetical protein SNOG_02875 [Phaeosphaeria nodorum SN15]
Length = 578
Score = 258 bits (658), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 155/480 (32%), Positives = 259/480 (53%), Gaps = 23/480 (4%)
Query: 85 SFQPTVQPPY-QPPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRY 143
+F + QPP QP N H + + PI +L+PY +W I+AR T K D++ +
Sbjct: 103 NFYGSKQPPAPQPQRNLPVHQSNPATSSHPHLYPIESLSPYAHKWTIRARCTNKSDMKEW 162
Query: 144 NNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGS-LKPAQKNFN 202
+NA+G GK+FS +LLD D GEIR T F ++ + + EVG VY IS + A+K F+
Sbjct: 163 HNAKGTGKLFSVNLLD-DTGEIRATAFTEAAEKLFPVFEVGTVYYISAPCRVTLAKKQFS 221
Query: 203 HLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPS 262
+L N++E+ E + V+ E+ D+ P+ +F+F I ++ S E ++ +D +G++ V
Sbjct: 222 NLPNDYELQFEKDTEVEKA-EDQDNKPQIRFNFTKIGDLNSVEKDTTIDTVGVLKEVAEV 280
Query: 263 VPILRKN-GMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSG 321
I KN + +R L L D S SV LT+WG K E D +++ K
Sbjct: 281 NTITSKNTNKDFSKRELTLADDSQTSVRLTIWG--------KTAETFDAPLESIIAFKGV 332
Query: 322 KVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREI--AAGGAKNE 379
KV+DF G+S+ + S + ++PD EAH+LR WF++ G+N AT S + + A+GG+
Sbjct: 333 KVSDFGGRSLSLLSSGSMMVDPDIDEAHKLRGWFNAVGQN-ATFSTHQNMAGASGGSSKN 391
Query: 380 IHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSG-N 438
+K +SQ E + P +++++A + ++K+ + Y AC CNKKV +
Sbjct: 392 ENKLISQCIEEETYLQDTPSYMSLKASVVYVKNTTVAYPAC----STAGCNKKVIEENPG 447
Query: 439 RWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQD 498
W C++C Q E +YRY+L + D TG W++ F E+G+ I+G A E +K + ++
Sbjct: 448 SWWCEKCQQSFPEPNYRYVLSVNVADHTGTLWLSCFDEAGQSIVGMSANEAMKIKVDDEE 507
Query: 499 D--VRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
+ F ++ + FR++ K E Y D+ + + V+ +NY+ E+ L LI +
Sbjct: 508 NNTQNFMTAMQEATCKTFNFRVRAKMETYQDQPKPRYQVMNMYPLNYAQEANKLAQLIKQ 567
>gi|393216703|gb|EJD02193.1| replication factor-a protein [Fomitiporia mediterranea MF3/22]
Length = 605
Score = 257 bits (657), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 151/461 (32%), Positives = 243/461 (52%), Gaps = 31/461 (6%)
Query: 101 RNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDS 160
R +GP+ + PI L+PYQ +W I+ARVT K D+R Y+ +G+GK+F+ L+D
Sbjct: 168 RANGPV--------VFPIEGLSPYQNKWTIRARVTVKSDVRHYSTPKGEGKIFTVTLMD- 218
Query: 161 DGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDL 220
D GEIR T FN VD+FY+ +E G+VY +SK + A+K F++++NE+E+ L + +
Sbjct: 219 DSGEIRATGFNHQVDQFYDKLEEGKVYYVSKARVNLAKKKFSNVQNEYELMLGTETEISE 278
Query: 221 CTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRK-NGMETQRRILN 279
C ++ + P+ + F +SE+ + E ++ DVIGIV V+ I+ K G ++R L
Sbjct: 279 CADQ-AAAPQITYHFVKLSELGNQEKDTTCDVIGIVKDVSDVTEIVAKATGRTIKKRELT 337
Query: 280 LKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQL 339
L D S +V +TLWG K E VL+ K +V DF G+S+ +T +
Sbjct: 338 LIDLSEFAVRMTLWG--------KQAESYTAEEHAVLAFKGARVGDFGGRSLSMSNATHM 389
Query: 340 FINPDFAEAHELREWFDSGGKNAA----TVSISREIAAGGAKNEIHKTVSQIKNEGLGRS 395
+NPD EAH LR WFDS A + S G + E KT+ +++
Sbjct: 390 SVNPDINEAHVLRGWFDSLNSPPAFKSHSGGSSSAGGFGDIRREAMKTLLEVRALQENVP 449
Query: 396 EKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYR 455
+ + + R I IK+D+ Y ACP CNKKV + W+C++C++ E +YR
Sbjct: 450 DGGENFSCRGTILHIKADNLFYPACP------TCNKKVIEGSEGWRCEKCDRAYTEPEYR 503
Query: 456 YLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYL 515
+++ + D TG W+ F + G + G A EL+ LK +D+ + I N Y
Sbjct: 504 FMMSMSVADHTGQVWLNGFNDVGLVVFGKTASELHELKE--RDESAYTAAIARATCNTYN 561
Query: 516 FRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
F + K++ Y ++ RV+ + + ++Y E+ L D + K
Sbjct: 562 FNCRAKQDTYNEQSRVRFGIQKIMPLDYKLEAGLLRDRLKK 602
>gi|392871535|gb|EJB12180.1| replication factor-a protein 1 (rpa1), variant [Coccidioides
immitis RS]
Length = 572
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 153/444 (34%), Positives = 241/444 (54%), Gaps = 27/444 (6%)
Query: 95 QPPPNFRNHGPILKNEAP--ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKV 152
QP + R P + AP A I PI AL+PY +W IKAR T K ++++ N G+G++
Sbjct: 148 QPQRHQRATVPTM---APTHANIYPIEALSPYSHKWTIKARCTNKSAIKKWYNRNGEGRL 204
Query: 153 FSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGS-LKPAQKNFNHLKNEWEIF 211
FS +LLD D GEIR T F D Y + E G VY IS ++ A++ F+++ N++E+
Sbjct: 205 FSVNLLD-DSGEIRATAFKEQCDLLYPLFEEGSVYYISSPCRVQMAKREFSNVNNDYELT 263
Query: 212 LEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKN-G 270
E + ++ + +D +P+ +F+F I + S E + +DV+G++ +V P + K+ G
Sbjct: 264 FERDTVIERAEDHED-VPQMRFNFTSIGHLHSVEKGTTIDVLGVLKTVEPVAEVPSKSTG 322
Query: 271 METQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKS 330
+R L L D +G SV LT+WG DV V++ K KV+DF G+S
Sbjct: 323 KRYTKRELMLVDDTGYSVPLTIWGGMATS--------FDVMPDSVVAFKGVKVSDFGGRS 374
Query: 331 IGTIPSTQLFINPDFAEAHELREWFDSGGK--NAATVSISREIA-AGGAKNEIHKTVSQI 387
+ + S + +PD EAH+L+ W+D+ GK AT ++S A + G + +I+K + ++
Sbjct: 375 LSLLNSGTITSDPDIEEAHKLKGWYDAQGKFDQFATHALSENAAISTGTRQDIYKAIVEV 434
Query: 388 KNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSG-NRWQCDRCN 446
++ LG +EKPD+ ++RA + FIK D+ CY AC +CNKKV Q +W C+ C
Sbjct: 435 RDNQLGMTEKPDYFSLRATVVFIKQDTICYPACV----QERCNKKVVQVDPEQWLCEHCE 490
Query: 447 QEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEII 506
+ +YRY+L A + D TG W+ F E G I+G PA L LK DD E I
Sbjct: 491 KSSLRPEYRYILSANVSDHTGQLWLNCFDEVGRAIMGMPANVLMELKE--SDDKAASEAI 548
Query: 507 RSRVFNQYLFRLKIKEELYGDEQR 530
+ + K K + + ++ R
Sbjct: 549 LHATCQMWNLKCKAKLDNFQNQPR 572
>gi|116179976|ref|XP_001219837.1| hypothetical protein CHGG_00616 [Chaetomium globosum CBS 148.51]
gi|88184913|gb|EAQ92381.1| hypothetical protein CHGG_00616 [Chaetomium globosum CBS 148.51]
Length = 586
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 160/481 (33%), Positives = 254/481 (52%), Gaps = 33/481 (6%)
Query: 57 TFNSQNPGSFSTPNSGTFRAPNAGSIVRSFQPTVQPPY--QPPPNFRNHGPILKNEAPAR 114
T QN S S G P A FQP Q + N GP+ A
Sbjct: 128 TGERQNTTSDSASFYGAQSEP-AAQTTPQFQPQAQRQLASRTGGGGGNSGPL-----AAT 181
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
I PI A++PY +W IKARVT K + + +GK+FS + LD + GEIR T FN V
Sbjct: 182 IYPIEAVSPYVNKWTIKARVTTKSYIGTWKRPTSEGKLFSVNFLD-ESGEIRATAFNTEV 240
Query: 175 DRFYEIIEVGRVYLISK-GSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQF 233
D+FY++++ G VY IS ++ A+K F+++ N++EI + + ++ E+ S+P+ +F
Sbjct: 241 DQFYDLLQEGSVYYISTPCKVQMAKKQFSNVANDYEIMFQHDTVIEKA-EDQSSVPQVRF 299
Query: 234 SFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGME-TQRRILNLKDTSGRSVELTL 292
+F I E++ E ++ +DVIG++ V I K + +R L L D +G SV +T+
Sbjct: 300 NFCTIQELQEVEKDATIDVIGVLKDVGKQEEIQSKTTQKGYDKRELTLVDDTGYSVRVTI 359
Query: 293 WGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELR 352
WG K D V++ K +V+DF G+S+ + S + I+PD EAH+L+
Sbjct: 360 WG--------KAAAEFDASLESVVAFKGMRVSDFGGRSLSLLSSGTMAIDPDIPEAHKLK 411
Query: 353 EWFDSGGKNAATVSISREI----AAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFIT 408
W+D+ G+ T + + AA G K+E+ K ++QIK+E +G E + T++ I
Sbjct: 412 GWYDAQGRGNTTFATHSHLSSIGAAAGQKDEM-KMIAQIKSENIGM-EDTAYFTIKGTIV 469
Query: 409 FIKSDSFCYTACPLMIGDRQCNKKVTQS-GNRWQCDRCNQEIDECDYRYLLQAQIQDQTG 467
++ ++F Y AC C+KKVT S ++W+C+RCN D YRY++ A + D TG
Sbjct: 470 HLRQENFAYPACI----SENCSKKVTPSMDDKWRCERCNITHDRAQYRYIMSADVSDHTG 525
Query: 468 LTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGD 527
TWV+ F +S I+G A E+ LK ++D E + + +FR + K + YGD
Sbjct: 526 HTWVSCFDDSARIIMGKSADEMMELKN--REDGSCAEAFEAANCRKMVFRCRAKMDTYGD 583
Query: 528 E 528
+
Sbjct: 584 Q 584
>gi|451853197|gb|EMD66491.1| hypothetical protein COCSADRAFT_138126 [Cochliobolus sativus
ND90Pr]
Length = 611
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 155/472 (32%), Positives = 258/472 (54%), Gaps = 23/472 (4%)
Query: 92 PPYQPPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGK 151
P QP + H + + PI +L+PY +W I+AR T K D++ ++N +G GK
Sbjct: 145 PAPQPQRSLPTHQSNPGTSSHPHLYPIESLSPYAHKWTIRARCTHKSDMKEWHNQKGTGK 204
Query: 152 VFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGS-LKPAQKNFNHLKNEWEI 210
+FS +LLD D GEIR T F V D+ + + E G VY IS + A+KNF++L N++E+
Sbjct: 205 LFSVNLLD-DTGEIRATAFTEVADKLFPVFEEGVVYYISAPCRVTLAKKNFSNLPNDYEL 263
Query: 211 FLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKN- 269
E + V+ E+ D+ P+ +F+F I ++ S E ++ +D IG++ V I KN
Sbjct: 264 QFERDTEVEKA-EDQDNKPQIRFNFTKIGDLTSVEKDTTIDTIGVLKEVAEVTTITSKNT 322
Query: 270 GMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGK 329
+ +R L L D S SV LT+WG K E DV +++ K KV+DF G+
Sbjct: 323 NKDFSKRELTLADDSQTSVRLTIWG--------KTAESFDVPLESIVAFKGVKVSDFGGR 374
Query: 330 SIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAA--GGAKNEIHKTVSQI 387
S+ + S + ++PD EAH+LR WF++ G+ +AT S + + + GG+KN+ K +S I
Sbjct: 375 SLSLLSSGSMMVDPDIDEAHKLRGWFNAVGQ-SATFSTHQNMVSTTGGSKNDA-KPISAI 432
Query: 388 KNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSG-NRWQCDRCN 446
E + P ++++RA + ++K +F Y AC + CNKKV + W C++C
Sbjct: 433 IEEEAYLQDTPSYMSLRASVLYVKDSTFAYPAC----STQGCNKKVIEENPGSWWCEKCQ 488
Query: 447 QEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDD--VRFGE 504
E +YRY+L A + D TG W++ F E+G+ I+G A E +K + +++ F
Sbjct: 489 ATFPEPNYRYVLSANVGDHTGTLWLSCFDEAGQTIVGMSANEAMKMKMDDEENGTRNFVN 548
Query: 505 IIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
+++ + FR++ K E Y D+ + + V+ +N++ E+ L LI +
Sbjct: 549 VMQEATCKTFNFRVRAKMETYQDQPKPRYQVMNIYPLNFAQEANKLAQLIKQ 600
>gi|449547245|gb|EMD38213.1| hypothetical protein CERSUDRAFT_113363 [Ceriporiopsis subvermispora
B]
Length = 618
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 150/446 (33%), Positives = 243/446 (54%), Gaps = 24/446 (5%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
I PI +L+PY W IKA VT K +R+++N RG+GK+FS +D D GEI+ T FN
Sbjct: 185 IYPIESLSPYMNNWTIKALVTQKSGIRKWSNDRGEGKLFSVVFVD-DTGEIKATAFNQAA 243
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
D + ++ G+VYL+SKG + A+K FN++ NE+E+ LE T+ V+ C + + +P +++
Sbjct: 244 DDLHARLQEGKVYLVSKGRVGLAKKKFNNVVNEYELTLERTTEVEECRDVVN-VPTVKYN 302
Query: 235 FRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMET-QRRILNLKDTSGRSVELTLW 293
F I+ +++ E ++I D+I ++ P I K+ T +R L L D SG SV LTLW
Sbjct: 303 FVDIAGLQNVEKDAICDIIAVIKETGPMGEITTKSSNRTITKRELTLVDRSGYSVRLTLW 362
Query: 294 GDFCNKEGQKLQEMVDVG-FFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELR 352
G E + G PV++ K KV DF G+S+ S+ + +NPD +AH LR
Sbjct: 363 G--------AQAEQWNAGDEHPVVAFKGVKVGDFQGRSLSMSMSSSMQLNPDIPDAHLLR 414
Query: 353 EWFDSGGKNAATVSISREIAAGGA----KNEIHKTVSQIKNEGLGRSEKPDWVTVRAFIT 408
W+D GG + S + +GG+ K E V ++K +G G +K + + RA I
Sbjct: 415 GWYDGGGAEQSYQSHANNSGSGGSGLAFKREEVLPVQEVKEQGFGEPDKGEIFSSRATIM 474
Query: 409 FIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGL 468
++ ++ Y ACP C+KKV ++ + W+C++CN ++ YRY++ A + D +G
Sbjct: 475 HVRPENLTYPACPT------CHKKVIEAHDGWRCEKCNMSHEKPQYRYIITAAVADWSGQ 528
Query: 469 TWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDE 528
W F E G+ I G EL +K + D ++ + + Y F + K++ Y D
Sbjct: 529 AWFQGFNEMGQVIFGMSGDELMEIKE--RSDTEMQNVLSRVIGSTYNFVCRAKQDNYNDN 586
Query: 529 QRVKITVIRADQVNYSSESRYLLDLI 554
R + V R + NY+ E Y+ +L+
Sbjct: 587 VRTRYGVSRIEPPNYAEEGNYIANLL 612
>gi|444516397|gb|ELV11146.1| Replication protein A 70 kDa DNA-binding subunit [Tupaia chinensis]
Length = 474
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 156/457 (34%), Positives = 248/457 (54%), Gaps = 64/457 (14%)
Query: 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
++++PIA+L PYQ +W I ARVT K +R ++N+RG+GK+F+ +L+D + GEIR T FN
Sbjct: 67 SKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFAIELVD-ETGEIRATAFNE 125
Query: 173 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQ 232
VD+F+ +IEV +VY SKG+LK A K F +KN++E+ ++V C E+D +P Q
Sbjct: 126 QVDKFFPLIEVNKVYYFSKGTLKIANKQFTTVKNDYEMTFNNETSVMPC-EDDHHLPTVQ 184
Query: 233 FSFRHISEIESAENNSIVDVIGIVISVNPSVPI-LRKNGMETQRRILNLKDTSGRSVELT 291
F F I E+ES +S+VD+IG+ S + I ++ E +R + L DTSG+ V T
Sbjct: 185 FDFTKIDELESKSKDSLVDIIGVCKSYEDATKITVKSTNREVSKRNIYLMDTSGKVVTTT 244
Query: 292 LWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHEL 351
LWG+ +K Q PVL+VK +V+DF G+S+ + S+ + +NPD EA++L
Sbjct: 245 LWGEDADKFDGSRQ--------PVLAVKGARVSDFGGRSLSVLSSSTVIMNPDIPEAYKL 296
Query: 352 REWFDSGGKNAATVSISREIAAGG-AKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFI 410
R WFDS G+ VSIS + GG N KT+ ++K+E LG+ +K D+ + A + ++
Sbjct: 297 RGWFDSEGQALDGVSISDLKSGGGIGSNTNWKTLYEVKSENLGQGDKADYFSSVATVVYL 356
Query: 411 KSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLT 469
+ ++ Y ACP ++ CNKKV Q ++C++C+ E YR +
Sbjct: 357 RKENCMYQACP----NQDCNKKVIDQQNGLYRCEKCDSEFPNFKYRMI------------ 400
Query: 470 WVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYG--- 526
L ++ F E+ ++ F + F++++K E Y
Sbjct: 401 --------------------------LSNEQAFEEVFQNANFRSFTFKIRVKLETYNVQT 434
Query: 527 ------DEQRVKITVIRADQVNYSSESRYLLDLISKS 557
DE R+K TV+ V+Y R L+ I K+
Sbjct: 435 AFLFSKDESRIKATVMDVKPVDYREYGRRLIMNIRKN 471
>gi|297271569|ref|XP_002800290.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like,
partial [Macaca mulatta]
Length = 532
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 143/365 (39%), Positives = 219/365 (60%), Gaps = 21/365 (5%)
Query: 89 TVQPPYQPPPNF-RNHGPILKNEA---PARIIPIAALNPYQGRWAIKARVTAKGDLRRYN 144
TV Y F + GP L N + ++++PIA+L PYQ +W I ARVT K +R ++
Sbjct: 182 TVSKAYGASKTFGKAGGPSLSNTSGGTQSKVVPIASLTPYQSKWTICARVTNKSQIRTWS 241
Query: 145 NARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHL 204
N+RG+GK+FS +L+D + GEIR T FN VD+F+ +IEV +VY SKG+LK A K F +
Sbjct: 242 NSRGEGKLFSLELVD-ESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAV 300
Query: 205 KNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVP 264
KN++E+ ++V C E+D +P QF F I ++ES +S+VD+IGI S +
Sbjct: 301 KNDYEMTFNNETSVMPC-EDDRHLPTVQFDFTGIDDLESKSKDSLVDIIGICKSYEDATK 359
Query: 265 I-LRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKV 323
I +R N E +R + L DTSG+ V TLWG+ +K D PVL++K +V
Sbjct: 360 ITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDADK--------FDGSRQPVLAIKGARV 411
Query: 324 NDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAG-GAKNEIHK 382
+DF G+S+ + S+ + NPD EA++LR WFD+ G+ VSIS + G G N K
Sbjct: 412 SDFGGRSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQALDGVSISDLKSGGVGGGNTNWK 471
Query: 383 TVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQ 441
T+ ++K+E LG+ +KPD+ + A + +++ ++ Y ACP + CNKKV Q ++
Sbjct: 472 TLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPT----QDCNKKVIDQQNGLYR 527
Query: 442 CDRCN 446
C++C+
Sbjct: 528 CEKCD 532
>gi|224006215|ref|XP_002292068.1| replication protein a [Thalassiosira pseudonana CCMP1335]
gi|220972587|gb|EED90919.1| replication protein a [Thalassiosira pseudonana CCMP1335]
Length = 570
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 161/476 (33%), Positives = 251/476 (52%), Gaps = 28/476 (5%)
Query: 90 VQPPY-QPPPNFRNHGPILKNEAPAR-IIPIAALNPYQGRWAIKARVTAKGDLRRYNNAR 147
QP Y N PI++ A + + PI+ LN Y RW I+A+VT K D++ ++NA+
Sbjct: 106 AQPMYGNVQANNNGSAPIVRTTADGQPVTPISGLNMYSNRWVIRAKVTNKSDVKTWSNAK 165
Query: 148 GDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNE 207
G+G +FS LLDS G +++ T F VD+FY ++E GRVY S G LK A +N+ K++
Sbjct: 166 GEGSLFSVTLLDSSGYDVKCTFFKEAVDKFYNMLEEGRVYTFSGGRLKVANMAYNNCKSQ 225
Query: 208 WEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISV-NPSVPIL 266
+EI + S + L E + ++ + F I+E+E+ E NS VD++ +V V + S +
Sbjct: 226 FEITFDQNSEIHLDAEGAE--IRENYDFVKIAELENMEPNSYVDILAVVKHVGDVSTIVS 283
Query: 267 RKNGMETQRRILNLKDTSGRSVELTLWGDFC-NKEGQKLQEMVDVGFFPVLSVKSGKVND 325
+K+G E + L ++D SG V+LTLWG+ N E Q PV++ K ++ D
Sbjct: 284 KKSGKEMTKVDLVVEDDSGADVKLTLWGNSAQNAENQ-------FANCPVVAFKKSRLGD 336
Query: 326 FSGKSI-GTIPSTQLFINPDFAEAHELREWFDS-GGKNAATVSISREIAAGGAKNEIHKT 383
+ G+S+ G P+ +NP + ++L +W+ S G K+ + S G E K
Sbjct: 337 YGGRSLSGGSPT----VNPQIPQTNQLMQWWGSNGNKSQSRSLSSSGGGKGPDPLEKRKD 392
Query: 384 VSQIKNEGLGRSEKPDWVTVRAFITFIK-----SDSFCYTACPLMIGD--RQCNKKVTQS 436
V IK E LG S+KPDW++ +A ITF+K D YTAC G+ R K S
Sbjct: 393 VCSIKEEHLGNSDKPDWLSFKATITFLKREKQGDDGAWYTACA-NSGEPCRNMFKATQTS 451
Query: 437 GNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEIL-GCPAKELYMLKYE 495
+ CD+C Q C R++ + D T +W++ F E E + G A LY E
Sbjct: 452 DGNYHCDKCQQTHPNCVRRFIFSGTVADDTSTSWISMFNEQAETLFNGMTADNLYQQSIE 511
Query: 496 LQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLL 551
D + + +++F+ K+K+E+ GDE R+K +V V+Y+ ESR LL
Sbjct: 512 QGDKDFYDSTFLKATYTEWVFKCKVKQEMVGDETRIKTSVASLVPVDYAKESRALL 567
>gi|440795064|gb|ELR16205.1| replication factora protein 1 (rpa1) subfamily protein
[Acanthamoeba castellanii str. Neff]
Length = 553
Score = 254 bits (650), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 152/459 (33%), Positives = 249/459 (54%), Gaps = 33/459 (7%)
Query: 116 IPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVD 175
+PI LNPYQ RW IKAR+T K D+R +NNARG +FS DLLD+ GGEIR T F
Sbjct: 106 MPIKGLNPYQNRWTIKARITHKSDMRPFNNARGQSFLFSVDLLDAFGGEIRCTFFGEAAT 165
Query: 176 RFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSF 235
++ + IE G+V+LI +GS+K A K F+ LKN++EI L+ + + TE+D SIP +F+F
Sbjct: 166 QWNDQIEAGQVFLIGRGSVKYANKRFSTLKNDYEISLDKNALIQ-PTEDDPSIPFYKFNF 224
Query: 236 RHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGD 295
I+++ + +D++G V+ I + G E Q+R++ + D+S VE+TLWG+
Sbjct: 225 VDIADLGGHAKDETIDILGAVLESGAIQDIRTQAGNELQKRVVKVGDSSNAQVEVTLWGE 284
Query: 296 FCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWF 355
Q Q D G V+ K K++D++ +S+ + +++L P EA +REWF
Sbjct: 285 ------QAAQWSGDRGL--VVLFKGVKISDYNQRSLTVLRTSKLEFEPRIPEADRVREWF 336
Query: 356 DSGGKNAATVSISREIAAGGAK--------------NEIHKTVSQIKNEGLGRSEKPDWV 401
++ G+ S+SR G +E K+ + +K G E +
Sbjct: 337 ETAGQ-GEVASMSRNDFKGRGGGGEGGFGGGDKRPWDETRKSFAAVKQVAFGGQESV-YF 394
Query: 402 TVRAFITFIKSDSF---CYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLL 458
+VRA +T IK Y ACP +CNKKVT G + C +C D RY+L
Sbjct: 395 SVRATVTEIKHSRDHPPWYEACPT----EKCNKKVTSVGGAYHCTKCGATHDHYKPRYVL 450
Query: 459 QAQIQDQTGLTWVTAFQESGEEIL-GCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFR 517
D +G +W+T F ++ ++L G A +L + Q + ++ ++ + +F Y R
Sbjct: 451 SLNANDHSGSSWLTCFNDTASDVLNGTTADDLLEMLSRPQGESQYEDVFQKALFKSYNLR 510
Query: 518 LKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
++ + Y E +VK++V++ ++Y+ ES++L++ I+K
Sbjct: 511 VRATQSEYEGENKVKLSVVKVIPMDYAKESKFLINSIAK 549
>gi|119480455|ref|XP_001260256.1| replication factor A 1, rfa1 [Neosartorya fischeri NRRL 181]
gi|119408410|gb|EAW18359.1| replication factor A 1, rfa1 [Neosartorya fischeri NRRL 181]
Length = 603
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 151/449 (33%), Positives = 254/449 (56%), Gaps = 25/449 (5%)
Query: 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
A I PI A++PY +W IKAR T+K ++ ++N +G++FS +LLD D GEIR T FN
Sbjct: 167 ATIYPIEAISPYSHKWTIKARCTSKSAIKTWHNRNSEGRLFSVNLLD-DSGEIRATGFNE 225
Query: 173 VVDRFYEIIEVGRVYLISKGS-LKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQ 231
D Y++ G VY IS ++ A+K F +L N++E+ E + V+ ++ D +P+
Sbjct: 226 QCDLLYDVFHEGSVYYISSPCRVQIAKKQFTNLNNDYELTFEKDTVVEKAEDQSD-VPQV 284
Query: 232 QFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGME-TQRRILNLKDTSGRSVEL 290
+F+F + +++S E ++ +D+IG++ V + I+ K + +R L L D+SG SV L
Sbjct: 285 RFNFTTVGDLQSVEKDTTIDIIGVLKDVGETTQIVSKTTSKPYDKRELTLVDSSGFSVRL 344
Query: 291 TLWGDFCNKEGQKLQEMVDVGFFP--VLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEA 348
T+WG ++ P V++ K KV+DF G+S+ + S + ++PD EA
Sbjct: 345 TIWGS----------TALNFNATPESVIAFKGVKVSDFGGRSLSLLSSGSMTVDPDIEEA 394
Query: 349 HELREWFDSGGKNAA-TVSISREIAAGGAKNEIH-KTVSQIKNEGLGRSEKPDWVTVRAF 406
H L+ W+D+ G++ T + A+ A H KT++QI+ E LG SE + +++
Sbjct: 395 HRLKGWYDAQGRHETFTSHATMSNASSSAMRLDHLKTIAQIREEQLGMSEDAVYFSLKGT 454
Query: 407 ITFIKSDSFCYTACPLMIGDRQCNKKVTQ-SGNRWQCDRCNQEIDECDYRYLLQAQIQDQ 465
+ +IK D+ CY AC L G CNKKVT+ +W+C+ C++ +YRY++ + D
Sbjct: 455 VIYIKQDNMCYPAC-LSEG---CNKKVTELDPGQWRCESCDKTHPRPEYRYIMLINVSDH 510
Query: 466 TGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELY 525
TG W++ F E G++++G A +L L+ + G+I + + FR + K + +
Sbjct: 511 TGQLWLSCFDEVGKQLMGTSADQLMDLRQNGEKAA--GDIFQEANCRTWNFRCRAKLDHF 568
Query: 526 GDEQRVKITVIRADQVNYSSESRYLLDLI 554
GD+QR++ V A VNYS E+ L+ LI
Sbjct: 569 GDQQRIRYQVSTAKPVNYSEEASRLMALI 597
>gi|159129170|gb|EDP54284.1| replication protein A 70 kDa DNA-binding subunit [Aspergillus
fumigatus A1163]
Length = 529
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 151/449 (33%), Positives = 255/449 (56%), Gaps = 25/449 (5%)
Query: 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
A I PI A++PY +W IKAR T+K ++ ++N +G++FS +LLD D GEIR T FN
Sbjct: 93 ATIYPIEAISPYSHKWTIKARCTSKSAIKTWHNRNSEGRLFSVNLLD-DSGEIRATGFNE 151
Query: 173 VVDRFYEIIEVGRVYLISK-GSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQ 231
D Y++ G VY IS ++ A+K F +L N++E+ E + V+ ++ D +P+
Sbjct: 152 QCDLLYDVFHEGGVYYISSPCRVQIAKKQFTNLNNDYELTFEKDTVVEKAEDQSD-VPQV 210
Query: 232 QFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGME-TQRRILNLKDTSGRSVEL 290
+F+F + +++S E ++ +D+IG++ V + I+ K + +R L L D+SG SV L
Sbjct: 211 RFNFTTVGDLQSVEKDTTIDIIGVLKDVGETTQIVSKTTSKPYDKRELTLVDSSGFSVRL 270
Query: 291 TLWGDFCNKEGQKLQEMVDVGFFP--VLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEA 348
T+WG ++ P V++ K KV+DF G+S+ + S + ++PD EA
Sbjct: 271 TIWG----------STALNFNATPESVIAFKGVKVSDFGGRSLSLLSSGSMTVDPDIEEA 320
Query: 349 HELREWFDSGGKNAATVS-ISREIAAGGAKNEIH-KTVSQIKNEGLGRSEKPDWVTVRAF 406
H L+ W+D+ G++ S + A+ AK H KT++Q++ E LG SE + +++
Sbjct: 321 HRLKGWYDAQGRHETFASHATMSNASSSAKRLDHLKTIAQVREEQLGMSEDAVYFSLKGT 380
Query: 407 ITFIKSDSFCYTACPLMIGDRQCNKKVTQ-SGNRWQCDRCNQEIDECDYRYLLQAQIQDQ 465
+ +IK D+ CY AC L G CNKKVT+ +W+C+ C++ +YRY++ + D
Sbjct: 381 VIYIKQDNMCYPAC-LSEG---CNKKVTELDPGQWRCESCDKTHPRPEYRYIMLINVSDH 436
Query: 466 TGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELY 525
TG W++ F E G++++G A +L L+ + G+I + + FR + K + +
Sbjct: 437 TGQLWLSCFDEVGKQLMGTSADQLMDLRQNGEKAA--GDIFQEANCRTWNFRCRAKLDHF 494
Query: 526 GDEQRVKITVIRADQVNYSSESRYLLDLI 554
GD+QR++ V A VNYS E+ L+ LI
Sbjct: 495 GDQQRIRYQVSTAKPVNYSEEASRLMALI 523
>gi|145234512|ref|XP_001400627.1| replication factor A protein 1 [Aspergillus niger CBS 513.88]
gi|134057574|emb|CAK37984.1| unnamed protein product [Aspergillus niger]
Length = 606
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 152/456 (33%), Positives = 259/456 (56%), Gaps = 23/456 (5%)
Query: 105 PILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGE 164
P+L A I PI A++PY +W IKAR T+K ++R ++N +G++FS +LLD D GE
Sbjct: 162 PVLA-ATHATIYPIEAISPYSHKWTIKARCTSKTNIRTWHNRNTEGRLFSVNLLD-DSGE 219
Query: 165 IRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEE 224
IR T FN D Y++ + G VY IS ++ A+K F +L N++E+ E + V+ ++
Sbjct: 220 IRATGFNDQCDMLYDVFQEGGVYYISNCRVQIAKKQFTNLNNDYELTFERDTVVEKAEDQ 279
Query: 225 DDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGME-TQRRILNLKDT 283
D +P+ +F+F I +++S E ++ +DVIG++ I K + +R L + D
Sbjct: 280 TD-VPQVRFNFTSIGDLQSVEKDTTIDVIGVLKEAMDVTQITSKTTNKPYDKRELIMVDN 338
Query: 284 SGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINP 343
+G SV LT+WG K + V++ K KV+DF G+S+ + S + ++P
Sbjct: 339 TGFSVRLTIWGSTAQKFNASPES--------VIAFKGVKVSDFGGRSLSLLSSGSMAVDP 390
Query: 344 DFAEAHELREWFDSGGKNAATVSISREI--AAGGAKNEIHKTVSQIKNEGLGRSEKPDWV 401
D EAH+L+ W+D+ G++ S + + A+ K++ KT++QI+ E LG SE+ +
Sbjct: 391 DIEEAHKLKGWYDAQGRDENFSSHASLLGTASSTMKSDQFKTIAQIREEQLGMSEEAVYF 450
Query: 402 TVRAFITFIKSD--SFCYTACPLMIGDRQCNKKVTQ-SGNRWQCDRCNQEIDECDYRYLL 458
+++A + +IK D SF Y AC L G CNKKVT+ +W+C+RC++ + DYRY++
Sbjct: 451 SLKATVIYIKQDNMSFAYPAC-LSEG---CNKKVTELDPGQWRCERCDKTHPQPDYRYIM 506
Query: 459 QAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRL 518
+ D TG W++ F + G ++ A +L ++ D+ G++ + + FR
Sbjct: 507 HVNVSDHTGQLWLSCFDDVGRSMMDISANQL--MELFQTDEKAAGDVFQDANCRTWNFRC 564
Query: 519 KIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLI 554
+ K + +G++QR++ V A +NYS E+ L DLI
Sbjct: 565 RAKIDHFGEQQRIRYQVSSAKPINYSHEAGRLADLI 600
>gi|350635289|gb|EHA23651.1| hypothetical protein ASPNIDRAFT_174835 [Aspergillus niger ATCC
1015]
Length = 592
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 152/456 (33%), Positives = 259/456 (56%), Gaps = 23/456 (5%)
Query: 105 PILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGE 164
P+L A I PI A++PY +W IKAR T+K ++R ++N +G++FS +LLD D GE
Sbjct: 148 PVLA-ATHATIYPIEAISPYSHKWTIKARCTSKTNIRTWHNRNTEGRLFSVNLLD-DSGE 205
Query: 165 IRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEE 224
IR T FN D Y++ + G VY IS ++ A+K F +L N++E+ E + V+ ++
Sbjct: 206 IRATGFNDQCDMLYDVFQEGGVYYISNCRVQIAKKQFTNLNNDYELTFERDTVVEKAEDQ 265
Query: 225 DDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGME-TQRRILNLKDT 283
D +P+ +F+F I +++S E ++ +DVIG++ I K + +R L + D
Sbjct: 266 TD-VPQVRFNFTSIGDLQSVEKDTTIDVIGVLKEAMDVTQITSKTTNKPYDKRELIMVDN 324
Query: 284 SGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINP 343
+G SV LT+WG K + V++ K KV+DF G+S+ + S + ++P
Sbjct: 325 TGFSVRLTIWGSTAQKFNASPES--------VIAFKGVKVSDFGGRSLSLLSSGSMAVDP 376
Query: 344 DFAEAHELREWFDSGGKNAATVSISREI--AAGGAKNEIHKTVSQIKNEGLGRSEKPDWV 401
D EAH+L+ W+D+ G++ S + + A+ K++ KT++QI+ E LG SE+ +
Sbjct: 377 DIEEAHKLKGWYDAQGRDENFSSHASLLGTASSTMKSDQFKTIAQIREEQLGMSEEAVYF 436
Query: 402 TVRAFITFIKSD--SFCYTACPLMIGDRQCNKKVTQ-SGNRWQCDRCNQEIDECDYRYLL 458
+++A + +IK D SF Y AC L G CNKKVT+ +W+C+RC++ + DYRY++
Sbjct: 437 SLKATVIYIKQDNMSFAYPAC-LSEG---CNKKVTELDPGQWRCERCDKTHPQPDYRYIM 492
Query: 459 QAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRL 518
+ D TG W++ F + G ++ A +L ++ D+ G++ + + FR
Sbjct: 493 HVNVSDHTGQLWLSCFDDVGRSMMDISANQL--MELFQTDEKAAGDVFQDANCRTWNFRC 550
Query: 519 KIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLI 554
+ K + +G++QR++ V A +NYS E+ L DLI
Sbjct: 551 RAKIDHFGEQQRIRYQVSSAKPINYSHEAGRLADLI 586
>gi|70989823|ref|XP_749761.1| replication protein A 70 kDa DNA-binding subunit [Aspergillus
fumigatus Af293]
gi|66847392|gb|EAL87723.1| replication protein A 70 kDa DNA-binding subunit [Aspergillus
fumigatus Af293]
Length = 529
Score = 252 bits (643), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 151/449 (33%), Positives = 254/449 (56%), Gaps = 25/449 (5%)
Query: 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
A I PI A++PY +W IKAR T K ++ ++N +G++FS +LLD D GEIR T FN
Sbjct: 93 ATIYPIEAISPYSHKWTIKARCTTKSAIKTWHNRNSEGRLFSVNLLD-DSGEIRATGFNE 151
Query: 173 VVDRFYEIIEVGRVYLISK-GSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQ 231
D Y++ G VY IS ++ A+K F +L N++E+ E + V+ ++ D +P+
Sbjct: 152 QCDLLYDVFHEGGVYYISSPCRVQIAKKQFTNLNNDYELTFEKDTVVEKAEDQSD-VPQV 210
Query: 232 QFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGME-TQRRILNLKDTSGRSVEL 290
+F+F + +++S E ++ +D+IG++ V + I+ K + +R L L D+SG SV L
Sbjct: 211 RFNFTTVGDLQSVEKDTTIDIIGVLKDVGETTQIVSKTTSKPYDKRELTLVDSSGFSVRL 270
Query: 291 TLWGDFCNKEGQKLQEMVDVGFFP--VLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEA 348
T+WG ++ P V++ K KV+DF G+S+ + S + ++PD EA
Sbjct: 271 TIWG----------STALNFNATPESVIAFKGVKVSDFGGRSLSLLSSGSMTVDPDIEEA 320
Query: 349 HELREWFDSGGKNAATVS-ISREIAAGGAKNEIH-KTVSQIKNEGLGRSEKPDWVTVRAF 406
H L+ W+D+ G++ S + A+ AK H KT++Q++ E LG SE + +++
Sbjct: 321 HRLKGWYDAQGRHETFASHATMSNASSSAKRLDHLKTIAQVREEQLGMSEDAVYFSLKGT 380
Query: 407 ITFIKSDSFCYTACPLMIGDRQCNKKVTQ-SGNRWQCDRCNQEIDECDYRYLLQAQIQDQ 465
+ +IK D+ CY AC L G CNKKVT+ +W+C+ C++ +YRY++ + D
Sbjct: 381 VIYIKQDNMCYPAC-LSEG---CNKKVTELDPGQWRCESCDKTHPRPEYRYIMLINVSDH 436
Query: 466 TGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELY 525
TG W++ F E G++++G A +L L+ + G+I + + FR + K + +
Sbjct: 437 TGQLWLSCFDEVGKQLMGTSADQLMDLRQNGEKAA--GDIFQEANCRTWNFRCRAKLDHF 494
Query: 526 GDEQRVKITVIRADQVNYSSESRYLLDLI 554
GD+QR++ V A VNYS E+ L+ LI
Sbjct: 495 GDQQRIRYQVSTAKPVNYSEEASRLMALI 523
>gi|412986814|emb|CCO15240.1| predicted protein [Bathycoccus prasinos]
Length = 773
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 157/457 (34%), Positives = 252/457 (55%), Gaps = 22/457 (4%)
Query: 117 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDR 176
P+ ALNPYQ W++ RVT ++R ++NA+G+GKV FD++D++G E++V CF
Sbjct: 143 PLQALNPYQQGWSVCVRVTTPIEVRTWHNAKGEGKVLGFDVVDAEGSEMKVVCFGDCALN 202
Query: 177 FYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDS---IPKQQF 233
E ++ VY ISK +L A +N + +E+ L+ + V E IPK Q+
Sbjct: 203 LAEKMQQYGVYEISKATLT-ASRNPRYAIGAYEMKLDHNTVVQPLPENAQGAMKIPKVQY 261
Query: 234 SFRHISEIESAENNSIVDVIGIVISVNP-SVPILRKNGMETQRRILNLKDTSGRSVELTL 292
+FR+I EIE+ ++ +DV+G+V V+P S+ +LR G E +R + L+D S VELTL
Sbjct: 262 NFRNIKEIETLMKDTSIDVMGVVHEVSPISMQMLRTGG-EKAKRSIKLRDDSSAEVELTL 320
Query: 293 WGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELR 352
WG+ + GQKL+ M+ P+L+ K V +F+GK++ +T + +NPD +A +LR
Sbjct: 321 WGEHADGLGQKLETMLFENQHPILACKRACVGEFNGKNLSIRNNTVMDVNPDHPKAGQLR 380
Query: 353 EWFDSGGKNAATVSIS---REIAAGGAKNEIHKTVSQIKNEGL-GRSEKPDWVTVRAFIT 408
W+D+GGK +S A G + + T+ QI+NE G WV R IT
Sbjct: 381 SWYDAGGKTEDVQVLSGGMGGAGAVGGRGDRFATIRQIENEAANGGCSNAFWVVCRGSIT 440
Query: 409 FIKS--DSFCYTACPLMIGDRQCNKKVTQS--GNRWQCDR-CNQEIDECDYRYLLQAQIQ 463
+I + + Y ACP+ R+C KK+ Q+ W+C+R + I D+RYL ++
Sbjct: 441 YIHNSDNGPMYPACPMDHDGRKCQKKMRQNEMNGMWECERHYDTVIPSVDWRYLCTVKLA 500
Query: 464 DQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRV-FNQYLFRLKIKE 522
D +G + F E GE++ G PA + K+ L D E R + + +Y F+LK+ E
Sbjct: 501 DYSGAVMASVFGEVGEKLFGMPAPD---FKHLLDTDFHAFEKKRDDIRWREYKFKLKVNE 557
Query: 523 ELYGDEQRVKITVIRADQV---NYSSESRYLLDLISK 556
+ Y D RVK T+ + + N++ ES+ L++ + K
Sbjct: 558 DTYNDMTRVKYTIQSVEPICDGNFADESKVLIEKLKK 594
>gi|315057045|ref|XP_003177897.1| replication factor-A protein 1 [Arthroderma gypseum CBS 118893]
gi|311339743|gb|EFQ98945.1| replication factor-A protein 1 [Arthroderma gypseum CBS 118893]
Length = 598
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 156/470 (33%), Positives = 258/470 (54%), Gaps = 25/470 (5%)
Query: 94 YQPPPNFRN-HGPILKNEAP-ARIIPIAALNPY-QGRWAIKARVTAKGDLRRYNNARGDG 150
+ PP +F+N P AP A I I AL+P+ +W IKAR T K +++ + N G+G
Sbjct: 142 HNPPQHFQNVQRPRPSGTAPNANIFSIEALSPFANNKWTIKARCTHKSNIKTWKNTFGEG 201
Query: 151 KVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISK-GSLKPAQKNFNHLKNEWE 209
K+FS +LLD D GEIR T F D Y + E G VY IS ++K A+K F+++ N++E
Sbjct: 202 KLFSVNLLD-DSGEIRATAFKDQCDLLYPVFEEGAVYYISSPCTVKMAKKEFSNVNNDYE 260
Query: 210 IFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRK- 268
+ + + V+ +++D +P+ +F+F + ++S + + +DV+G++ V+ + + K
Sbjct: 261 LTFDRDTVVEKAEDQND-VPQIRFNFTSLGNLQSIDKGTTIDVLGVLKDVDTTSQVTSKT 319
Query: 269 NGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSG 328
+G +R L L D SG SV LT+WG+ D V++ K KV+DF G
Sbjct: 320 SGKPYDKRELTLVDNSGFSVRLTVWGNTAT--------TFDTPPESVVAFKGVKVSDFGG 371
Query: 329 KSIGTIPSTQLFINPDFAEAHELREWFDSGGK-NAATVSISREIAAGGAKNEIHKTVSQI 387
+++ + S + ++PD EAH L+ W+D+ GK N+ T S GG KT+S+I
Sbjct: 372 RTLSLLSSGTITVDPDIEEAHRLKGWYDAQGKANSFTAYSSGVTGGGGGSWPTFKTISEI 431
Query: 388 KNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQC-NKKVTQS-GNRWQCDRC 445
++E + ++ + ++A + +K D+ CY ACP + C NKKVT+ ++W C+RC
Sbjct: 432 RDEEIPSADSFENFALKATVIHVK-DNLCYPACP----NEACKNKKVTRGDSDQWHCERC 486
Query: 446 NQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEI 505
+ YRY+L D TG W++ F E+G+ I G A EL +K E DD EI
Sbjct: 487 ERSYANPKYRYILSLNASDHTGQIWLSCFDEAGQMIFGMTADELMRIKEE--DDAAANEI 544
Query: 506 IRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLIS 555
+ + + F+ + K + Y ++QR + V A ++YS+E+ L LI+
Sbjct: 545 TKGATYCTWNFKCRAKLDTYQEQQRTRYNVYAATPIDYSTEADQLSKLIA 594
>gi|358367561|dbj|GAA84179.1| replication factor A 1, Rfa1 [Aspergillus kawachii IFO 4308]
Length = 606
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 149/456 (32%), Positives = 259/456 (56%), Gaps = 23/456 (5%)
Query: 105 PILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGE 164
P+L A A I PI A++PY +W IKAR T+K +++ ++N +G++FS +LLD D GE
Sbjct: 162 PVLA-AAHATIYPIEAISPYSHKWTIKARCTSKTNIKTWHNRNTEGRLFSVNLLD-DSGE 219
Query: 165 IRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEE 224
IR T FN D Y++ + G VY IS ++ A+K F +L N++E+ E + V+ ++
Sbjct: 220 IRATGFNDQCDMLYDVFQEGGVYYISNCRVQIAKKQFTNLNNDYELTFERDTVVEKAEDQ 279
Query: 225 DDSIPKQQFSFRHISEIESAENNSIVDVIGIVI-SVNPSVPILRKNGMETQRRILNLKDT 283
D +P+ +F+F I +++S E ++ +DVIG++ + S + +R L + D
Sbjct: 280 SD-VPQVRFNFTSIGDLQSVEKDTTIDVIGVLKEDMGVSQITSKTTNKPYNKRELVMVDN 338
Query: 284 SGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINP 343
+G SV LT+WG Q + + V++ K KV+DF G+S+ + S + ++P
Sbjct: 339 TGFSVRLTIWG----TTAQNFNALPE----SVIAFKGVKVSDFGGRSLSLLSSGSMAVDP 390
Query: 344 DFAEAHELREWFDSGGKNAATVSISREIAAGGA--KNEIHKTVSQIKNEGLGRSEKPDWV 401
D EAH+L+ W+D+ G+ S + + A + K++ KT++QI+ E LG SE+ +
Sbjct: 391 DIEEAHKLKGWYDAQGRAENFSSHASLLGAASSTMKSDQFKTIAQIREEQLGMSEEAVYF 450
Query: 402 TVRAFITFIKSD--SFCYTACPLMIGDRQCNKKVTQ-SGNRWQCDRCNQEIDECDYRYLL 458
+++A + +IK D SF Y AC +CNKKVT+ +W+C+RC++ DYRY++
Sbjct: 451 SLKATVIYIKQDNMSFAYPACL----SEKCNKKVTELDPGQWRCERCDKTHPRPDYRYIM 506
Query: 459 QAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRL 518
+ D TG W++ F + G+ ++ A +L ++ D+ G+ + + FR
Sbjct: 507 HVNVSDHTGQLWLSCFDDVGKSMMDMSANQL--MELFQTDEKAAGDAFQDANCRTWNFRC 564
Query: 519 KIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLI 554
+ K + +G++QR++ V A+ +NYS E+ L DLI
Sbjct: 565 RAKIDHFGEQQRIRYQVSSANPINYSQEASRLADLI 600
>gi|302421690|ref|XP_003008675.1| replication factor-A protein [Verticillium albo-atrum VaMs.102]
gi|261351821|gb|EEY14249.1| replication factor-A protein [Verticillium albo-atrum VaMs.102]
Length = 609
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 138/387 (35%), Positives = 223/387 (57%), Gaps = 20/387 (5%)
Query: 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
+ I PI AL+PY +W IKARVT K D+R ++ G+GK+FS +LLD + GEI+ T FN
Sbjct: 178 SNIYPIEALSPYAHKWTIKARVTQKSDIRTWHKPSGEGKLFSVNLLD-ESGEIKATGFNE 236
Query: 173 VVDRFYEIIEVGRVYLISK-GSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQ 231
D++Y++++ G VY IS + A+K F +L N++E+ E + ++ E+ ++P+
Sbjct: 237 QCDQYYDLLQEGSVYYISNPCKVGMAKKQFTNLPNDYELTFERDTVIEKA-EDQTNVPQV 295
Query: 232 QFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKN-GMETQRRILNLKDTSGRSVEL 290
+++F +I E++S E ++ VDV+G++ V I+ K+ G ++R L L D S SV +
Sbjct: 296 RYNFCNIQELQSVEKDATVDVVGVLKDVGEVSQIVSKSTGKPYEKRELTLVDDSNFSVRI 355
Query: 291 TLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHE 350
T+WG K + D V++ K KV+DF G+S+ + S + ++PD +AH
Sbjct: 356 TIWG--------KSAQGFDASPESVVAFKGVKVSDFGGRSLSLLSSGTMSVDPDIPDAHR 407
Query: 351 LREWFDSGGKNAATV---SISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFI 407
L+ W+DS G+N A S+ + A + + K V Q+K+E LG EK D+ ++A I
Sbjct: 408 LKGWYDSSGRNDAFATHNSMGSGLGAATGRPDEDKVVVQVKDEQLGMGEKQDFFNLKATI 467
Query: 408 TFIKSDSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQT 466
+IK D+F Y AC + CNKKV + W+CD+C+ D +YRY++ + D T
Sbjct: 468 VYIKQDTFAYPAC----RNEGCNKKVVDMNDGTWRCDKCDVSHDRPEYRYIMSVNVCDHT 523
Query: 467 GLTWVTAFQESGEEILGCPAKELYMLK 493
W++ F E G I+G A +L LK
Sbjct: 524 SQLWLSCFDEVGRSIMGMSADQLMELK 550
>gi|327301885|ref|XP_003235635.1| replication factor A 1 [Trichophyton rubrum CBS 118892]
gi|326462987|gb|EGD88440.1| replication factor A 1 [Trichophyton rubrum CBS 118892]
Length = 598
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 156/475 (32%), Positives = 260/475 (54%), Gaps = 33/475 (6%)
Query: 93 PYQPPPNFRNHGPILKNEAP------ARIIPIAALNPY-QGRWAIKARVTAKGDLRRYNN 145
P+ PP +F+N ++ P A I I AL+P+ +W IKAR T K +++ + N
Sbjct: 141 PHNPPQHFQN----IQRSRPSGMTSNANIFSIEALSPFANNKWTIKARCTHKSNIKTWKN 196
Query: 146 ARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISK-GSLKPAQKNFNHL 204
G+GK+FS +LLD D GEIR T F D Y I E G VY IS ++K A+K F+++
Sbjct: 197 TFGEGKLFSVNLLD-DSGEIRATAFKDQCDLLYPIFEEGAVYYISSPCTVKMAKKEFSNV 255
Query: 205 KNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVP 264
N++E+ + + V+ +++D +P+ +F+F + +++S + + +DV+GI+ V+ +
Sbjct: 256 NNDYELTFDRDTVVEKAEDQND-VPQIRFNFTSLGDLQSIDKGTTIDVLGILKDVDATSQ 314
Query: 265 ILRKN-GMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKV 323
+ K G +R L L D SG SV LT+WG+ D V++ K KV
Sbjct: 315 VTSKTTGKPYDKRELTLVDNSGFSVRLTVWGNTATN--------FDTPPESVVAFKGVKV 366
Query: 324 NDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGK-NAATVSISREIAAGGAKNEIHK 382
+DF G+++ + S + ++PD EAH L+ W+D+ GK N+ T S GG K
Sbjct: 367 SDFGGRTLSLLSSGTVTVDPDIEEAHRLKGWYDAQGKSNSFTAYSSGATGGGGGSWPTFK 426
Query: 383 TVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQC-NKKVTQSG-NRW 440
T+S+I++E + ++ + +++A + +K D+ CY ACP + C NKKVT+ ++W
Sbjct: 427 TISEIRDEEIPSADSFESFSLKATVIHVK-DNLCYPACP----NEACKNKKVTRGDLDQW 481
Query: 441 QCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDV 500
C+RC + YRY+L D TG W++ F E+G+ I G A EL +K E DD
Sbjct: 482 HCERCERSYANPKYRYILSLNACDHTGQIWLSCFDEAGQMIFGMTADELMKIKEE--DDA 539
Query: 501 RFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLIS 555
EI + + + F+ + K + Y ++QR + V A ++Y++E+ L LI+
Sbjct: 540 AANEITKGATYCTWNFKCRAKLDTYQEQQRTRYNVYAATPIDYATEADQLSKLIA 594
>gi|326474770|gb|EGD98779.1| replication protein A DNA-binding subunit [Trichophyton tonsurans
CBS 112818]
Length = 598
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 155/474 (32%), Positives = 258/474 (54%), Gaps = 33/474 (6%)
Query: 94 YQPPPNFRNHGPILKNEAP------ARIIPIAALNPY-QGRWAIKARVTAKGDLRRYNNA 146
+ PP F+N ++ P A I I AL+P+ +W IKAR T K +++ + N
Sbjct: 142 HNPPQQFQN----IQRSRPSGMTSNANIFSIEALSPFANNKWTIKARCTHKSNIKTWKNT 197
Query: 147 RGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISK-GSLKPAQKNFNHLK 205
G+GK+FS +LLD D GEIR T F D Y I E G VY IS ++K A+K F+++
Sbjct: 198 FGEGKLFSVNLLD-DSGEIRATAFKDQCDLLYPIFEEGAVYYISSPCTVKMAKKEFSNVN 256
Query: 206 NEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPI 265
N++E+ + + V+ +++D +P+ +F+F + ++S + + +DV+GI+ V+ + +
Sbjct: 257 NDYELTFDRDTVVEKAEDQND-VPQIRFNFTSLGNLQSIDKGTTIDVLGILKDVDATSQV 315
Query: 266 LRKN-GMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVN 324
K G +R L L D SG SV LT+WG+ D V++ K KV+
Sbjct: 316 TSKTTGKPYDKRELTLVDNSGFSVRLTVWGNTATN--------FDTPPESVVAFKGVKVS 367
Query: 325 DFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGK-NAATVSISREIAAGGAKNEIHKT 383
DF G+++ + S + ++PD EAH L+ W+D+ GK N+ T S GG KT
Sbjct: 368 DFGGRTLSLLSSGTVTVDPDIEEAHRLKGWYDAQGKSNSFTAYSSDTTGGGGGSWPTFKT 427
Query: 384 VSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQC-NKKVTQSG-NRWQ 441
+S+I++E + ++ + +++A + +K D+ CY ACP + C NKKVT+ ++W
Sbjct: 428 ISEIRDEEIPSADSFESFSLKATVIHVK-DNLCYPACP----NEACKNKKVTRGDLDQWH 482
Query: 442 CDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVR 501
C+RC + YRY+L D TG W++ F E+G+ I G A EL +K + DD
Sbjct: 483 CERCERSYANPKYRYILSLNACDHTGQIWLSCFDEAGQMIFGMTADELMKIKED--DDAA 540
Query: 502 FGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLIS 555
EI + + + F+ + K + Y ++QR + VI A ++Y++E+ L LI+
Sbjct: 541 ANEITKGATYCTWNFKCRAKLDTYQEQQRTRYNVIAATPIDYATEADQLSKLIA 594
>gi|428164777|gb|EKX33791.1| replication protein A1, 70kDa [Guillardia theta CCMP2712]
Length = 702
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 143/418 (34%), Positives = 237/418 (56%), Gaps = 24/418 (5%)
Query: 142 RYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNF 201
R +G+G++F+ D++D G +IR T FN D+++ ++ +VY I G++K A + F
Sbjct: 299 RNTMTKGEGRLFNIDIMDHTG-DIRGTFFNDDADKWFPHLQANKVYKIRGGTIKQANRKF 357
Query: 202 NHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNP 261
N +E+EI ST D+ D PK ++FR I EIE+ E SIVDV+ +V V P
Sbjct: 358 NTTSSEYEITFNRDSTFDIVA--DSEAPKVSYNFRKIEEIENTEPQSIVDVLAVVHDVQP 415
Query: 262 SVPILRKNGM----ETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLS 317
+ K+G + +R ++L DT G++++LTLW D +K+ +M + PV++
Sbjct: 416 LGSVTVKSGSNAGNQIAKRDVSLLDTGGKTIKLTLWDD--HKDVVTENDMSN----PVIA 469
Query: 318 VKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAK 377
+K +V+DF+G+S+ T S+ + +NPD EAH L+ W+D GK+A ++ +++G
Sbjct: 470 IKGVRVSDFNGRSLSTTRSSMIEMNPDLQEAHLLKGWYDCHGKSAVFQAVGGSMSSG--S 527
Query: 378 NEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSD-SFCYTACPLMIGDRQCNKKVTQS 436
+ KT+SQIK E LG +EKPD+ T+RA++T+ K D ++ Y A P + KKV
Sbjct: 528 KDSRKTISQIKGENLGNAEKPDYFTLRAWVTYFKHDGTWNYPANP------ETKKKVIAH 581
Query: 437 GNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYEL 496
G+ W + Q I+ C+ RY++ D TG W +AF + G +LG A EL LK +
Sbjct: 582 GDSWFDESTQQTIERCERRYVMNLSCSDFTGSHWFSAFNDQGIALLGKTADELQELKDSM 641
Query: 497 QDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLI 554
D + ++ VF Y+ +++ K E + DE RVK T++ V++ + + +LI
Sbjct: 642 NPD--YEATWQASVFKPYVLKVRAKAETWQDETRVKCTIMEVKPVDWREGATEIRNLI 697
>gi|121715180|ref|XP_001275199.1| replication factor A 1, rfa1 [Aspergillus clavatus NRRL 1]
gi|119403356|gb|EAW13773.1| replication factor A 1, rfa1 [Aspergillus clavatus NRRL 1]
Length = 603
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 150/449 (33%), Positives = 254/449 (56%), Gaps = 25/449 (5%)
Query: 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
A I PI ++P+ +W IKAR T+K ++ ++N +G++FS +LLD D GEIR T FN
Sbjct: 167 ATIYPIEYISPFSNKWTIKARCTSKSTIKTWHNRNSEGRLFSVNLLD-DSGEIRATGFNE 225
Query: 173 VVDRFYEIIEVGRVYLISK-GSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQ 231
D Y++ + G VY IS ++ A+K F +L N++EI E + V+ ++ D +P+
Sbjct: 226 QCDMLYDVFQEGGVYYISTPCRVQIAKKQFTNLNNDYEITFERGTVVEKAEDQSD-VPQV 284
Query: 232 QFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGME-TQRRILNLKDTSGRSVEL 290
+F+F + +++S E ++ +DV+G++ V I+ K+ + +R L L D+SG SV L
Sbjct: 285 RFNFTTVGDLQSVEKDTTIDVVGVLKEVGEISQIVSKSTNKPYDKRELTLVDSSGFSVRL 344
Query: 291 TLWGDFCNKEGQKLQEMVDVGFFP--VLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEA 348
T+WG ++ P V++ K KV+DF G+S+ + S + I+PD EA
Sbjct: 345 TVWG----------TTALNFSATPESVIAFKGVKVSDFGGRSLSLLSSGSMTIDPDIEEA 394
Query: 349 HELREWFDSGGKNAA--TVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAF 406
H L+ W+D+ G++ + + ++ K + KTV+QI+ E LG S++ + + RA
Sbjct: 395 HRLKGWYDAQGRHETFSSHASMSSASSSAGKLDRFKTVAQIREEQLGMSDEAAYFSCRAT 454
Query: 407 ITFIKSDSFCYTACPLMIGDRQCNKKVTQ-SGNRWQCDRCNQEIDECDYRYLLQAQIQDQ 465
+ +IK D+ CY AC L G CNKKVT+ +W+C+ C++ +YRY++ + D
Sbjct: 455 VIYIKQDTICYPAC-LSQG---CNKKVTELDPGQWRCESCDKTHLRPEYRYIMLINVSDH 510
Query: 466 TGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELY 525
TG W++ F E G ++LG A EL ++ + GE+ + + FR + K + Y
Sbjct: 511 TGQLWLSCFDEVGRQLLGISADELMDMRQSESNLA--GEVFQEANCRTWNFRCRAKLDHY 568
Query: 526 GDEQRVKITVIRADQVNYSSESRYLLDLI 554
GD+ R++ V A +NYS E+ L++LI
Sbjct: 569 GDQPRIRYQVSSAKAINYSEEASRLMNLI 597
>gi|351704190|gb|EHB07109.1| Replication protein A 70 kDa DNA-binding subunit [Heterocephalus
glaber]
Length = 514
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 141/427 (33%), Positives = 234/427 (54%), Gaps = 55/427 (12%)
Query: 128 WAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVY 187
W + ARVT K +R ++N+RG+GK+FS +L+D + GEIR T FN VD+F+ +IEV +VY
Sbjct: 131 WTVCARVTNKSQIRTWSNSRGEGKLFSLELVD-ESGEIRATAFNEQVDKFFPLIEVNKVY 189
Query: 188 LISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENN 247
SKG+LK A K F +KN++E+ ++V C E+D +P QF F I ++E+ +
Sbjct: 190 YFSKGTLKIANKQFTAVKNDYEMTFNNETSVVPC-EDDHHLPTVQFDFTGIGDLENKSKD 248
Query: 248 SIVDVIGIVISVNPSVPI-LRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQE 306
S++D+IGI S + I ++ + E +R + L D SG+ V TLWG+ +K Q
Sbjct: 249 SLIDIIGICKSYEDATKITVKSSNREVAKRNIYLMDMSGKVVTATLWGEDADKFDGSRQ- 307
Query: 307 MVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVS 366
PV+++K +V+DF G+++ + S+ + +NPD EA++LR WFD+ G+ VS
Sbjct: 308 -------PVMAIKGARVSDFGGRTLSVLSSSTIIMNPDIPEAYKLRGWFDAEGQALDGVS 360
Query: 367 ISREIAAG-GAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIG 425
IS + G GA N KT+ ++K+E LG+ +K D+ + A + +++ ++ Y ACP
Sbjct: 361 ISDLKSGGLGASNTNWKTLYEVKSENLGQGDKADYFSSVATVVYLRKENCMYQACPT--- 417
Query: 426 DRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGC 484
+ CNKKV Q ++C++C++E YR +
Sbjct: 418 -QDCNKKVIDQQNGLYRCEKCDREFPNFKYRMI--------------------------- 449
Query: 485 PAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYS 544
L ++ F E+ ++ F ++F++++K E Y DE R+K TV+ V+Y
Sbjct: 450 -----------LSNEQAFEEVFQNANFRSFMFKIRVKLETYNDESRIKATVMDVKPVDYR 498
Query: 545 SESRYLL 551
R L+
Sbjct: 499 DYGRRLI 505
>gi|300708826|ref|XP_002996585.1| hypothetical protein NCER_100307 [Nosema ceranae BRL01]
gi|239605898|gb|EEQ82914.1| hypothetical protein NCER_100307 [Nosema ceranae BRL01]
Length = 573
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 148/453 (32%), Positives = 252/453 (55%), Gaps = 37/453 (8%)
Query: 110 EAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTC 169
E P + I ++NP+ +W IK R+ K D+R+++N +G+GK+FSF++ D D G+I+V
Sbjct: 154 EDPNKYTQINSINPFCNKWIIKGRIVLKSDIRKFSNKKGEGKLFSFEIAD-DSGQIKVVA 212
Query: 170 FNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIP 229
F+ VD FY IIE+GRVY I KG +K ++K F++ N++EI L+ S + ED+ P
Sbjct: 213 FSESVDIFYPIIEIGRVYTIQKGEIKMSKKTFSNNNNDYEIQLDVNSEIKKV--EDNETP 270
Query: 230 KQQFSFRHISEIESAENNSIVDVIGIVISVNPSVP-ILRKNGMETQRRILNLKDTSGRSV 288
K F+F I +I S+ N+ +D++GIV +V I++ E+ RR + L D +G S+
Sbjct: 271 KFFFNFVKIKDITSS--NAPIDIVGIVKEAGEAVSFIVKATQKESLRRNITLIDETG-SI 327
Query: 289 ELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEA 348
T W G K +E ++V VL++KS KV+DF G S+ +I ++Q+ NPD +E+
Sbjct: 328 RATFW-------GAKAEEEIEVD--SVLAIKSIKVSDFGGVSLSSIHTSQIHKNPDISES 378
Query: 349 HELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFIT 408
H L W+++ GKN R++ +S +KN+ E P + VRA +
Sbjct: 379 HSLLGWYNTEGKNVKIDLPERDLKIFN--------ISDVKNQ-----EMP-YSAVRATLM 424
Query: 409 FIKSDSFCYTACPLMIGDRQCNKKVTQSG-NRWQCDRCNQEIDECDYRYLLQAQIQDQTG 467
FIK D+ Y +C + C KKV ++ ++C++C++ EC +RYL+ A I D TG
Sbjct: 425 FIKEDNLMYDSCK----EENCTKKVYKNEFGEYRCEKCDKNSYECTHRYLIHANISDSTG 480
Query: 468 LTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGD 527
W T F + +LG A + + D + I+ ++ +Y+ +L+ +++ Y D
Sbjct: 481 QLWATLFNDQAILLLGMSASDFREMAD--NDPNQSQMFIKKFLYREYIIKLRSRQDNYND 538
Query: 528 EQRVKITVIRADQVNYSSESRYLLDLISKSFRK 560
E +++ + +VNY E++ + + K R+
Sbjct: 539 EIKMRHNISEIREVNYKEETKKEILYVEKLLRE 571
>gi|440637381|gb|ELR07300.1| hypothetical protein GMDG_02480 [Geomyces destructans 20631-21]
Length = 608
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 162/486 (33%), Positives = 266/486 (54%), Gaps = 26/486 (5%)
Query: 76 APNA--GSIVRSFQPTVQPPYQPPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKAR 133
AP A G+ +P QP Q P+ GP + I PI L+PY +W IKAR
Sbjct: 137 APGAVSGAGFYGNKPAQQPAQQSLPS--RTGPS-SSAGQGNIYPIETLSPYAHKWTIKAR 193
Query: 134 VTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGS 193
V+ K ++R ++ G+GK+FS +LLD + GEI+ T FN D+ Y++ + G VY IS
Sbjct: 194 VSNKSEIRTWHKQSGEGKLFSVNLLD-ESGEIKATGFNEQCDQLYDLFQEGSVYYISSPC 252
Query: 194 -LKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDV 252
++ A+K F +L N++E+ + + V+ E+ +++P+ +F+F I+ +++ E ++ +DV
Sbjct: 253 RVQLAKKQFTNLPNDYELTFDRETKVEKA-EDQENVPQVRFNFTDIASLQTVEKDTTIDV 311
Query: 253 IGIVISVNPSVPILRKNGMET-QRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVG 311
IG++ V I+ K+ + +R L L D S SV LT+WG K D
Sbjct: 312 IGVLKEVADVTQIVSKSTSKPYDKRELTLVDDSDFSVRLTIWG--------KTAVSFDAQ 363
Query: 312 FFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNA--ATVSISR 369
+++ K KV+DF G+S+ + S + ++PD EAH+LR W+D+ G++ A+ S
Sbjct: 364 PESIVAFKGAKVSDFGGRSLSLLSSGSMTVDPDIQEAHKLRGWYDTHGRSNTFASHSGMA 423
Query: 370 EIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQC 429
A G + + TV+++ + LG SE D+ + +A I +IK ++F Y AC L G C
Sbjct: 424 SAGAAGGRQDPVMTVAKVYEDSLGMSESTDYFSTKATIVYIKQENFAYPAC-LSEG---C 479
Query: 430 NKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKE 488
NKKVT G+ W+C++C+ + +YRY++ + D TG W++ F + G I+G A +
Sbjct: 480 NKKVTDMGDGTWRCEKCDITHPKPEYRYIMSLNVNDHTGQLWLSCFDDVGRLIMGMSADQ 539
Query: 489 LYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESR 548
L LK +D G LF+ + K + + D+QRV+ V A VNYS E++
Sbjct: 540 LMALKDS--EDPAAGRAFEEANCKTMLFKCRAKMDSFQDQQRVRYQVTAASPVNYSQEAQ 597
Query: 549 YLLDLI 554
L +LI
Sbjct: 598 KLAELI 603
>gi|219123923|ref|XP_002182265.1| replication protein a large 70 kD subunit [Phaeodactylum
tricornutum CCAP 1055/1]
gi|217406226|gb|EEC46166.1| replication protein a large 70 kD subunit [Phaeodactylum
tricornutum CCAP 1055/1]
Length = 606
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 153/478 (32%), Positives = 254/478 (53%), Gaps = 24/478 (5%)
Query: 93 PYQPPPNFRNHGPILKNEAPAR-IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGK 151
P+ P +H PI+++ I I+ LN Y +W I+ARVT+K D+R ++NA+G+G
Sbjct: 138 PHHASPVRSSHAPIVRDTVNGTPITNISNLNMYANKWTIQARVTSKSDIRTWSNAKGEGS 197
Query: 152 VFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIF 211
+FS +LLD ++R T F VD+FY +++G VY S G LK A +N ++ +EI
Sbjct: 198 LFSVELLDQTQ-DVRATFFKEAVDKFYSFLQIGSVYTFSGGRLKVANAQYNTCQSNFEIT 256
Query: 212 LEATSTVDLCTEEDDSIPKQQFSF-RHISEIESAENNSIVDVIGIVISVNPSVPIL-RKN 269
+ S + L +D +I +Q + F I+ +E E N++VD++ +V +V I+ +K+
Sbjct: 257 FDQNSEIHLA-NDDGNIQRQHYEFIDSIAGLERTEPNTMVDLLAVVQAVGEVATIVSKKS 315
Query: 270 GMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGK 329
G E + L L DTS + LTLWGD + + D PV++++ +V+D+ G+
Sbjct: 316 GQELTKCDLTLIDTSATQITLTLWGD------KAASALTDYNQQPVVAIRRARVSDYGGR 369
Query: 330 SIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGA----KNEIHKTVS 385
S+ S + NPD + L+ W+ + N S GGA E +T++
Sbjct: 370 SLSL--SGSIETNPDIPQTAPLQTWWRTQTANGGVTGKSLSATRGGAGVMESLEQRQTIA 427
Query: 386 QIKNEGLGRS-EKPDWVTVRAFITFIKSD---SFCYTACPLMIGDRQCNKKVTQSGN-RW 440
IKN LG + +KPDW+T +A ++F+K D Y AC + KVTQ+ + W
Sbjct: 428 DIKNNNLGYAGDKPDWLTFKATVSFLKKDKEGGSWYPACANAGEPCKNRYKVTQTTDGNW 487
Query: 441 QCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEIL-GCPAKELYMLKYELQDD 499
CD+C C R++ ++D T TWV+ F E E +L G A ++Y Y+ Q D
Sbjct: 488 YCDKCQGSFPTCVRRWIFSGVVEDDTSSTWVSFFNEQAETLLAGATADQVYAETYQDQQD 547
Query: 500 VRFGEIIRSRV-FNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
+ ++ +++F+ K+K E+ +E RVK +V+ V+++ ESR LL ++K
Sbjct: 548 QDAYDSYFAKANHTEWIFKCKVKNEMVNEESRVKTSVVAMQPVDFAKESRDLLSALAK 605
>gi|296828318|ref|XP_002851311.1| replication factor-A protein 1 [Arthroderma otae CBS 113480]
gi|238838865|gb|EEQ28527.1| replication factor-A protein 1 [Arthroderma otae CBS 113480]
Length = 599
Score = 244 bits (624), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 151/469 (32%), Positives = 252/469 (53%), Gaps = 26/469 (5%)
Query: 96 PPPNFRN--HGPILKNEAPARIIPIAALNPY-QGRWAIKARVTAKGDLRRYNNARGDGKV 152
PP +F+N A I I AL+P+ +W IKAR T K D++ + N G+GK+
Sbjct: 144 PPQHFQNVQRPRTTGMTTNANIFSIEALSPFANNKWTIKARCTHKSDIKTWKNTYGEGKL 203
Query: 153 FSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISK-GSLKPAQKNFNHLKNEWEIF 211
FS +LLD D GEIR T F D Y + E G VY IS ++K A+K ++++ N++E+
Sbjct: 204 FSVNLLD-DSGEIRATAFKDQCDLLYPVFEEGSVYYISSPCTVKMAKKEYSNVNNDYELT 262
Query: 212 LEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKN-G 270
+ + V+ +++D +P+ +F+F + ++S E + +DV+GI+ V+ + + K G
Sbjct: 263 FDRDTVVEKAEDQND-VPQVRFNFTGLGNLQSIEKGTTIDVLGILKEVDTTSQVTSKTTG 321
Query: 271 METQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKS 330
+R L L D SG SV LT+WG+ D V++ K KV+DF G++
Sbjct: 322 KPYDKRELTLVDNSGFSVRLTVWGNTAT--------TFDTPPESVVAFKGVKVSDFGGRT 373
Query: 331 IGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNE--IHKTVSQIK 388
+ + S + ++PD EAH L+ W+D+ GK+ + S E +GG KT+S+I+
Sbjct: 374 LSLLSSGSITVDPDIEEAHRLKGWYDAQGKSNFFTAYSSEGGSGGGGGSWPTFKTISEIR 433
Query: 389 NEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGN--RWQCDRCN 446
+E + +E P+ ++A + +K D+ CY ACP + C K G+ +W C+RC
Sbjct: 434 DEQVPTAENPENFALKATVIHVK-DNLCYPACP----NEACKNKKMTGGDLEQWHCERCE 488
Query: 447 QEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEII 506
+ YRY+L D TG W++ F E+G+ I G A +L +K + D+V EI
Sbjct: 489 RSYANPKYRYILSLNASDHTGQIWLSCFDEAGQAIFGMTADKLMRIKED--DEVAANEIT 546
Query: 507 RSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLIS 555
+ + + F+ + K + Y ++QR + V A ++YS+E+ L LI+
Sbjct: 547 KGATYCTWNFKCRAKLDTYQEQQRTRYNVYAATPIDYSTEADQLSKLIA 595
>gi|393245622|gb|EJD53132.1| replication factor-a protein [Auricularia delicata TFB-10046 SS5]
Length = 617
Score = 244 bits (624), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 146/450 (32%), Positives = 231/450 (51%), Gaps = 43/450 (9%)
Query: 112 PARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFN 171
P + PI L+PYQ +W I+ARVT K +++ ++N +G+GK+FS +D GEIR T FN
Sbjct: 185 PQPVYPIEGLSPYQNKWTIQARVTNKSEMKSWSNTKGEGKLFSCTFMDQ-SGEIRATAFN 243
Query: 172 AVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQ 231
+ +E ++ G VY ++K + A+K F++L NE+EI ++ + ++ ++D +P Q
Sbjct: 244 TAAEELFEKLKEGNVYYVTKARVSVAKKKFSNLPNEYEITMDRNTEIEEIVDDDIDVPLQ 303
Query: 232 QFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGM-ETQRRILNLKDTSGRSVEL 290
++ F + +++ + + DVIG+V V P L K E +R L + D S SV L
Sbjct: 304 KYEFVSLKTLDTLNKDEVCDVIGVVQEVGPVNKFLAKTTQRELTKRDLTIVDQSECSVRL 363
Query: 291 TLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHE 350
TLWG K E PV++ K KV DF G+++ + S L I+PD E+H
Sbjct: 364 TLWG--------KQAENWSRDDKPVVAFKGCKVGDFGGRTLSLLSSGSLAIDPDLEESHR 415
Query: 351 LREWFDSGGKNAA------------TVSISR-EIAAGGAKNEIHKTVSQIKNEGLGRSEK 397
LR WFD+ GK+A + I R E A E+ + Q
Sbjct: 416 LRGWFDAQGKDATFHSFSSGGGGVASGPIDRLEAMPLAAVREMEIVIDQ----------- 464
Query: 398 PDWVTVRAFITFIKS-DSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRY 456
P RA + +K+ D Y AC ++CNKK++++ +W+C+ C Q DE YRY
Sbjct: 465 PQLFVTRAAVVHVKADDKMWYAAC------QRCNKKISEASGKWRCEHCKQNWDEPSYRY 518
Query: 457 LLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLF 516
+L + D T W+TAF ++G I+G +L+ +K QD+ F I++ V Y F
Sbjct: 519 MLSIAVADNTSQCWLTAFNDAGLTIVGQSGNDLHKIKG--QDESGFNAIVKKAVGKYYTF 576
Query: 517 RLKIKEELYGDEQRVKITVIRADQVNYSSE 546
+ K E Y D R K T+ R +++ E
Sbjct: 577 SCRAKSETYQDLTRTKYTISRLQPLDWKQE 606
>gi|189241203|ref|XP_970077.2| PREDICTED: similar to replication factor a 1, rfa1 [Tribolium
castaneum]
Length = 585
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 148/445 (33%), Positives = 234/445 (52%), Gaps = 23/445 (5%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
I PIA+LNP+ W I+ARV K ++R ++NA+G+GK+FS DL+D GGEIR T F +V
Sbjct: 154 ISPIASLNPFHNNWIIRARVVNKTNVRNWSNAKGEGKLFSIDLVDK-GGEIRCTAFRDLV 212
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
D+F++ +EV +VY ISK L+P + F LK+++E++ + ++ ++++ IP+ ++
Sbjct: 213 DKFFDRLEVDKVYYISKCQLQPINRQFCSLKHQFEMYFTPETIIEPSYDDNEIIPQITYN 272
Query: 235 FRHISEIESAENNSIVDVIGIVISVNPSVPILRKN-GMETQRRILNLKDTSGRSVELTLW 293
F I ++ E +IVDVIG+ +++ + K+ E Q+R L L D + ++ L LW
Sbjct: 273 FTTIDKVAVMEAGTIVDVIGVCKTISELQSFVAKSTNREMQKRQLVLVDQTKTAISLNLW 332
Query: 294 GDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSG-KSIGTIPSTQLFINPDFAEAHELR 352
G E V PV+ VK+ K+ +F G KSI + ++ L I+P+ E H LR
Sbjct: 333 GS--------QAESFAVTGNPVILVKNAKIYEFRGAKSITLMGTSLLKIDPEIRETHILR 384
Query: 353 EWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKS 412
W+ S G ++S G K Q SEKP + I ++
Sbjct: 385 RWYHSEGNQVEITNVSHRNGYGSTPWLTFKEARQ-----QTISEKPLYYQTFGTILLVRL 439
Query: 413 DSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWV 471
D Y +CP + C KKV N ++C++CN+E YR L+ + D + WV
Sbjct: 440 DRAVYKSCP----NADCQKKVLDLENGMYRCEKCNREFPNFKYRLLVSMNVADSSSSQWV 495
Query: 472 TAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRV 531
T F E+ILG A+E+ L D V + F Q++F+ + K E Y DEQ++
Sbjct: 496 TVFSSEAEKILGKTAQEIGELMETDPDTV--ANMFEEAQFKQFIFKCRAKIETYNDEQKM 553
Query: 532 KITVIRADQVNYSSESRYLLDLISK 556
K V+ V+Y + YL+D I K
Sbjct: 554 KTVVVTVAPVDYEEYNAYLVDRIEK 578
>gi|242019128|ref|XP_002430017.1| Replication protein A 70 kDa DNA-binding subunit, putative
[Pediculus humanus corporis]
gi|212515079|gb|EEB17279.1| Replication protein A 70 kDa DNA-binding subunit, putative
[Pediculus humanus corporis]
Length = 600
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 153/459 (33%), Positives = 242/459 (52%), Gaps = 27/459 (5%)
Query: 99 NFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL 158
+F N + + I PI++L+PYQ RW IKARVT K R Y++ARG+GK+FS
Sbjct: 152 SFGNKPKLTAQVSTGTIHPISSLSPYQNRWCIKARVTNKQAPRNYSSARGEGKLFSVVFT 211
Query: 159 DSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTV 218
D + GEI+ T FN+ VD+F ++++V + K L N L + +L + +V
Sbjct: 212 D-ESGEIKCTGFNSAVDKFSDLLQVS----LRKLKLFYTYLFSNFLTESFNFYLVSNCSV 266
Query: 219 DLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPIL-RKNGMETQRRI 277
C E+D +P ++F IS++ +SIVDVIG+ I R G E ++R
Sbjct: 267 QPC-EDDVGLPSAVYNFVPISKLIEMSVDSIVDVIGVAKHATDVQNITARSTGRELKKRE 325
Query: 278 LNLKDTSGRSVELTLWGDFCNKEGQKLQEMV--DVGFFPVLSVKSGKVNDF-SGKSIGTI 334
+ L D+SG SV +TLWG E V D PV++VKS ++ +F GKS+
Sbjct: 326 VVLVDSSGASVSMTLWG----------SEAVGFDCSENPVVAVKSARLTEFMGGKSLSVQ 375
Query: 335 PSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGR 394
++ + +PD EAH+LR W+ SGG SIS + +G N + ++GLG
Sbjct: 376 MNSTVLRDPDIDEAHKLRGWWASGGSTLECSSISNKGTSGSGSNTNWVLFGDLTSQGLGL 435
Query: 395 SEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNR-WQCDRCNQEIDECD 453
+K D+ + + K ++ Y +CP+ C KK+ N ++C++CN+E +
Sbjct: 436 GDKADYFSAVVNVLMAKQENCIYKSCPV----EDCKKKIIDLNNGVYRCEKCNREHNNFK 491
Query: 454 YRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQ 513
YR LL AQ+ D +G +WVT F E +++LG A+ + K +D + E F Q
Sbjct: 492 YRMLLSAQVSDYSGSSWVTMFHEEAQKLLGVDAE--IIGKMMDNNDESYKEYFNDINFKQ 549
Query: 514 YLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLD 552
+ + + K E Y DE+R+K TV+ + ++Y S +R LL+
Sbjct: 550 FQMKFRTKMESYNDEKRLKTTVVNLEPIDYKSYARRLLE 588
>gi|255074989|ref|XP_002501169.1| hypothetical protein MICPUN_57417 [Micromonas sp. RCC299]
gi|226516432|gb|ACO62427.1| hypothetical protein MICPUN_57417 [Micromonas sp. RCC299]
Length = 525
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 145/481 (30%), Positives = 251/481 (52%), Gaps = 30/481 (6%)
Query: 93 PYQPPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKV 152
P P P + + + + + I ALNPY G W +KA++ KG++R + NARG+ V
Sbjct: 49 PVTPAP-VKKEAAAMPTSSGKKHLAINALNPYMGTWTVKAKLAVKGNIRTFRNARGESSV 107
Query: 153 FSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFL 212
+ + D++G I+ T + + ++ I+EVG+VY +SKGSL+PA K ++ + NE+E+ L
Sbjct: 108 CTLEFCDAEGTAIQATLWKDAIAKYDSILEVGKVYYVSKGSLRPANKKYSSVNNEYEMSL 167
Query: 213 EATSTVDLCTEEDDSIPKQQFSFRHISEIESAE----NNSIVDVIGIVISVNPSVPILRK 268
+ ++LC + D + K Q ++ + +I+ VD++ +V +V I RK
Sbjct: 168 DGRCEIELCADGDADVDKMQRAY-DLCKIDQLARKIGGRGTVDILAVVTAVGDLGSIKRK 226
Query: 269 -NGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFS 327
+G E QRR L L D + R+V TLW ++G+ L+ MV PV++++ +V+D++
Sbjct: 227 SDGGELQRRDLTLLDETKRTVTCTLWNSLAVEQGESLKNMV----APVVAIRGVRVSDYN 282
Query: 328 GKSIGTIPSTQLFINPDFAE----AHELREWFDSGGKNAATVSISREIAA------GGAK 377
G S+ T+ ++L + P A+ LR W+D+ G A TV+ +A+ G +
Sbjct: 283 GVSVSTLARSELVLEPASADIATKTAALRAWYDADGATAETVAAGEGLASARRAGDGSGR 342
Query: 378 NEIHKTVSQIKNEGL--GRSEKPD-WVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT 434
+ +T + +E P V + I IK D Y A G+ NKKV
Sbjct: 343 SLTERTTFNALQPAIVPAATEPPAIGVVGHSTIVLIKPDQAMYYASNPEEGN---NKKVV 399
Query: 435 QSG-NRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLK 493
+ +W+ + DEC YRY+++ ++ D +G W+ F E E+LG A EL+ LK
Sbjct: 400 PTAEGKWEDPATGKVYDECAYRYIVRMKMSDASGGGWINVFHEQAVEMLGIGAGELHELK 459
Query: 494 YELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDL 553
+ + I++ F+ + +K K E Y E R ++TV++ + +Y++ESR LL L
Sbjct: 460 --TNNPAAYERKIKAAQFSSWNVMVKAKTEEYQGESRRRLTVMKCQKPDYAAESRNLLKL 517
Query: 554 I 554
+
Sbjct: 518 M 518
>gi|302667076|ref|XP_003025132.1| hypothetical protein TRV_00711 [Trichophyton verrucosum HKI 0517]
gi|291189215|gb|EFE44521.1| hypothetical protein TRV_00711 [Trichophyton verrucosum HKI 0517]
Length = 475
Score = 238 bits (607), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 149/446 (33%), Positives = 243/446 (54%), Gaps = 25/446 (5%)
Query: 93 PYQPPPNFRNHGPILKN--EAPARIIPIAALNPY-QGRWAIKARVTAKGDLRRYNNARGD 149
P+ PP +F+N + + A I I AL+P+ RW IKAR T K +++ + N G+
Sbjct: 47 PHNPPQHFQNAQRSRPSGMASNANIFSIEALSPFANNRWTIKARCTHKSNIKTWKNTFGE 106
Query: 150 GKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISK-GSLKPAQKNFNHLKNEW 208
GK+FS +LLD D GEIR T F D Y I E G VY IS ++K A+K F+++ N++
Sbjct: 107 GKLFSVNLLD-DSGEIRATAFKDQCDLLYPIFEEGAVYYISSPCTVKMAKKEFSNVNNDY 165
Query: 209 EIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRK 268
E+ + + V+ +++D +P+ +F+F + ++S + + +DV+GI+ V+ + + K
Sbjct: 166 ELTFDRDTVVEKAEDQND-VPQIRFNFTSLGNLQSIDKGTTIDVLGILKDVDATSQVTSK 224
Query: 269 N-GMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFS 327
G +R L L D SG SV LT+WG+ D V++ K KV+DF
Sbjct: 225 TTGKPYDKRELTLVDNSGFSVRLTVWGNTATN--------FDTPPESVVAFKGVKVSDFG 276
Query: 328 GKSIGTIPSTQLFINPDFAEAHELREWFDSGGK-NAATVSISREIAAGGAKNEIHKTVSQ 386
G+++ + S + ++PD EAH L+ W+D+ GK N+ T S G KT+S+
Sbjct: 277 GRTLSLLSSGTVTVDPDIEEAHRLKGWYDAQGKSNSFTAYSSGATGGGSGSWPTFKTISE 336
Query: 387 IKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQC-NKKVTQSG-NRWQCDR 444
I++E L ++ + +++A + +K D+ CY ACP + C NKKVT+ ++W C+R
Sbjct: 337 IRDEELPSADSFEAFSLKATVIHVK-DNLCYPACP----NEACKNKKVTRGDLDQWHCER 391
Query: 445 CNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGE 504
C + YRY+L D TG W++ F E+G+ I G A EL +K E DD E
Sbjct: 392 CERSYANPKYRYILSLNACDHTGQIWLSCFDEAGQMIFGMTADELMKIKEE--DDAAANE 449
Query: 505 IIRSRVFNQYLFRLKIKEELYGDEQR 530
I + + + F+ + K + Y ++QR
Sbjct: 450 ITKGATYCTWNFKCRAKLDTYQEQQR 475
>gi|302498152|ref|XP_003011074.1| hypothetical protein ARB_02596 [Arthroderma benhamiae CBS 112371]
gi|291174622|gb|EFE30434.1| hypothetical protein ARB_02596 [Arthroderma benhamiae CBS 112371]
Length = 475
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 149/446 (33%), Positives = 244/446 (54%), Gaps = 25/446 (5%)
Query: 93 PYQPPPNFRNHGPILKN--EAPARIIPIAALNPY-QGRWAIKARVTAKGDLRRYNNARGD 149
P+ PP +F+N + + A I I AL+P+ +W IKAR T K +++ + N G+
Sbjct: 47 PHNPPQHFQNAQRSRPSGMASNANIFSIEALSPFANNKWTIKARCTHKSNIKTWKNTFGE 106
Query: 150 GKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISK-GSLKPAQKNFNHLKNEW 208
GK+FS +LLD D GEIR T F D Y I E G VY IS ++K A+K F+++ N++
Sbjct: 107 GKLFSVNLLD-DSGEIRATAFKDQCDLLYPIFEEGAVYYISSPCTVKMAKKEFSNVNNDY 165
Query: 209 EIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRK 268
E+ + + V+ +++D +P+ +F+F + ++S + + +DV+GI+ V+ + + K
Sbjct: 166 ELTFDRDTVVEKAEDQND-VPQIRFNFTSLGNLQSIDKGTTIDVLGILKDVDATSQVTSK 224
Query: 269 N-GMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFS 327
G +R L L D SG SV LT+WG+ D V++ K KV+DF
Sbjct: 225 TTGKPYDKRELTLVDNSGFSVRLTVWGNTATN--------FDTPPESVVAFKGVKVSDFG 276
Query: 328 GKSIGTIPSTQLFINPDFAEAHELREWFDSGGK-NAATVSISREIAAGGAKNEIHKTVSQ 386
G+++ + S + ++PD EAH L+ W+D+ GK N+ T S GG KT+S+
Sbjct: 277 GRTLSLLSSGTVTVDPDIEEAHRLKGWYDAQGKSNSFTAYSSGATGGGGGSWPTFKTISE 336
Query: 387 IKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQC-NKKVTQSG-NRWQCDR 444
I++E L ++ + +++A + +K D+ CY ACP + C NKKVT+ ++W C+R
Sbjct: 337 IRDEELPSADSFETFSLKATVIHVK-DNLCYPACP----NEACKNKKVTRGDLDQWHCER 391
Query: 445 CNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGE 504
C + YRY+L D TG W++ F E+G+ I G A EL +K E DD E
Sbjct: 392 CERSYANPKYRYILSLNACDHTGQIWLSCFDEAGQMIFGMTADELMKIKEE--DDTAANE 449
Query: 505 IIRSRVFNQYLFRLKIKEELYGDEQR 530
I + + + F+ + K + Y ++QR
Sbjct: 450 ITKGATYCTWNFKCRAKLDTYQEQQR 475
>gi|449015647|dbj|BAM79049.1| probable replication protein A [Cyanidioschyzon merolae strain 10D]
Length = 663
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 156/460 (33%), Positives = 239/460 (51%), Gaps = 44/460 (9%)
Query: 112 PARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFN 171
P I+A NPYQ I+ RV KG+LR Y+NA+G+GK+FSF++ D + G +RVT F
Sbjct: 201 PGGYTKISAANPYQNNVIIRGRVVQKGELRTYSNAKGEGKLFSFEIAD-ETGNMRVTAFR 259
Query: 172 AVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQ 231
++ IE+ +Y I+ SLKPA FNH + +E+ L+ S + +D+ I +
Sbjct: 260 EKALEAHQRIELNGIYSIAGASLKPANAQFNHTGHSFEMILDQNSVITQLP-DDNMIQRV 318
Query: 232 QFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRK-NGMETQRRILNLKDTSGRSVEL 290
F F I ++ +VDVIGI + + I K G+ +R + L D +G SV L
Sbjct: 319 SFDFVKIRDLMDVPVGKVVDVIGIALDIGEVGEISSKTTGLPVAKREVKLIDDTGCSVAL 378
Query: 291 TLWGD-----FCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDF 345
T+WG+ F N++ + PVL VKS K DF+G S+ T PS+ + +NP+
Sbjct: 379 TIWGERARSLFSNEDDR-----------PVLLVKSAKRGDFNGVSLSTTPSSHVEVNPNI 427
Query: 346 AEAHELREWFDSGGKNAATVSISREIAAGGAKNEI------HKTVSQIKNEGLGR----S 395
EA ELR WFDS G A + GGA+ E KT +Q+++E +G +
Sbjct: 428 REAFELRGWFDSEGHGAEFQDLG-GTPLGGARTESRIRNSERKTFAQVQSEHIGEDPHSA 486
Query: 396 EKPDWVTVRAFITFIKSDSF---CYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDE 451
+ TVRA I+ IK D Y +CP C KKV +S + ++C+RC++ +
Sbjct: 487 PGASYYTVRATISHIKQDEERPPWYLSCP------DCKKKVIEESPDMYRCERCDKLVKP 540
Query: 452 CDYRYLLQAQIQDQTGLTWVTAFQESGEEILGC-PAKELYMLKYELQDDVRFGEIIRSRV 510
RY+ Q D TG W+ + E G I G A+EL +K D + I+
Sbjct: 541 TP-RYIFSIQAMDATGSHWLNCYDEVGPIIFGGYSAEELKRIKE--TDSEEYQRILEQAH 597
Query: 511 FNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYL 550
F ++LFR++++ + Y DE + V+ A+++NY SE + L
Sbjct: 598 FGEFLFRVRVRSDTYQDEMTFRHMVVGAEKINYESEMKML 637
>gi|342185999|emb|CCC95484.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 464
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 145/446 (32%), Positives = 246/446 (55%), Gaps = 34/446 (7%)
Query: 107 LKNEAPARIIPIAALNPYQG-RWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEI 165
++ + +I PI +L P+ G +W I+ARVT K D+R +N GK+FSF L+D + I
Sbjct: 1 MQQPSHQQIQPIDSLTPFLGSKWWIRARVTDKSDVRTWNKPTSQGKLFSFTLID-ESASI 59
Query: 166 RVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEED 225
R T FN VD F +I G+VY S G +K A + F+++ N++E+ +++S + + +
Sbjct: 60 RATVFNDAVDLFNPLIVNGQVYFFSGGQVKNANRKFSNVNNDYELSFDSSSQISIARDAS 119
Query: 226 D-SIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKN-GMETQRRILNLKDT 283
SIP Q+++F I ++ E S+VDV+ +++ V+ I +K+ G + +R + + D+
Sbjct: 120 SASIPLQRYNFVPIEILKQREVGSLVDVLAVILGVDELTTITQKSTGRDLIKRNVKVSDS 179
Query: 284 SGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINP 343
+ ++++TLW D Q M G VL+++ KV F G ++ T +NP
Sbjct: 180 TA-AIDVTLWNDDAK------QWMHQPG--TVLAIRQLKVGSFDGVTLSATLQTSFDVNP 230
Query: 344 DFAEAHELREWF-DSGGKNAATVSISREIAAGGAKN-----EIHKTVSQIKNEGLGRSEK 397
+ + +L EWF +GG+ A++S +A GA N +K + EGLGR +
Sbjct: 231 NIPDVKKLSEWFISTGGRGVASLSAQGTLAGAGAANSGEGYRGYKYFDDVAAEGLGRGPR 290
Query: 398 PDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQS---GNRWQCDRCNQEIDECDY 454
PD++ VR ++K D+ Y ACP CNKKVT G+R++C++C+Q +
Sbjct: 291 PDYIDVRCVPVYLKQDAQWYDACP------NCNKKVTLEGALGDRYRCEKCDQTVVPTQ- 343
Query: 455 RYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQY 514
RY++ Q+ D W+T F ESG + G PA EL K + +D + ++ + R+
Sbjct: 344 RYIVSIQVTDNVSQVWLTLFNESGIDFFGMPASELK--KRQEEDAMFVTKVAQMRMNRPV 401
Query: 515 LFRLKIKEELYG---DEQRVKITVIR 537
L RL++K+E Y D++RV++TV+R
Sbjct: 402 LMRLRVKDEPYTGGEDQERVRLTVVR 427
>gi|270013263|gb|EFA09711.1| hypothetical protein TcasGA2_TC011844 [Tribolium castaneum]
Length = 593
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 148/453 (32%), Positives = 234/453 (51%), Gaps = 31/453 (6%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
I PIA+LNP+ W I+ARV K ++R ++NA+G+GK+FS DL+D GGEIR T F +V
Sbjct: 154 ISPIASLNPFHNNWIIRARVVNKTNVRNWSNAKGEGKLFSIDLVDK-GGEIRCTAFRDLV 212
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
D+F++ +EV +VY ISK L+P + F LK+++E++ + ++ ++++ IP+ ++
Sbjct: 213 DKFFDRLEVDKVYYISKCQLQPINRQFCSLKHQFEMYFTPETIIEPSYDDNEIIPQITYN 272
Query: 235 FRHISEIESAENNSIV--------DVIGIVISVNPSVPILRKN-GMETQRRILNLKDTSG 285
F I ++ E +IV DVIG+ +++ + K+ E Q+R L L D +
Sbjct: 273 FTTIDKVAVMEAGTIVGNWRMSILDVIGVCKTISELQSFVAKSTNREMQKRQLVLVDQTK 332
Query: 286 RSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSG-KSIGTIPSTQLFINPD 344
++ L LWG E V PV+ VK+ K+ +F G KSI + ++ L I+P+
Sbjct: 333 TAISLNLWGS--------QAESFAVTGNPVILVKNAKIYEFRGAKSITLMGTSLLKIDPE 384
Query: 345 FAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVR 404
E H LR W+ S G ++S G K Q SEKP +
Sbjct: 385 IRETHILRRWYHSEGNQVEITNVSHRNGYGSTPWLTFKEARQ-----QTISEKPLYYQTF 439
Query: 405 AFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQ 463
I ++ D Y +CP + C KKV N ++C++CN+E YR L+ +
Sbjct: 440 GTILLVRLDRAVYKSCP----NADCQKKVLDLENGMYRCEKCNREFPNFKYRLLVSMNVA 495
Query: 464 DQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEE 523
D + WVT F E+ILG A+E+ L D V + F Q++F+ + K E
Sbjct: 496 DSSSSQWVTVFSSEAEKILGKTAQEIGELMETDPDTV--ANMFEEAQFKQFIFKCRAKIE 553
Query: 524 LYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
Y DEQ++K V+ V+Y + YL+D I K
Sbjct: 554 TYNDEQKMKTVVVTVAPVDYEEYNAYLVDRIEK 586
>gi|145356040|ref|XP_001422250.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582490|gb|ABP00567.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 573
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 140/448 (31%), Positives = 249/448 (55%), Gaps = 23/448 (5%)
Query: 116 IPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVD 175
+P+AALNPY+ W +K ++T KG++R Y +ARG GKV S D +D +G I T + ++
Sbjct: 131 VPLAALNPYRTPWTVKVKLTNKGNVREYKSARGPGKVCSVDFVDEEGTAIGATLWREAIE 190
Query: 176 RFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQ--- 232
++ ++EVG+VY +SKGSLKPA K ++ N++E+ L+ +D+C + D S ++
Sbjct: 191 KYDSVLEVGKVYYVSKGSLKPADKRYSTSGNDYEMNLDGKCEIDVCNDIDQSSAQKMQRA 250
Query: 233 FSFRHISEIES---AENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVE 289
++F I+++ S A N V + +S S+ + + E +R + L D S ++V
Sbjct: 251 YAFVPINKLASKIGARGNVDVVAVVKEVSELSSIR-RKSDNTELNKREVVLVDDSAKTVR 309
Query: 290 LTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINP-DFAEA 348
LTLW + G++L M + PV++++S +V D+ G SIGT+ + + I+P D A
Sbjct: 310 LTLWNALAVEVGEQLASMTN----PVVAIRSVRVGDYEGVSIGTVSRSDIVIDPEDVPRA 365
Query: 349 HELREWFDSGGKNAATVSISREIAAG--GAKNEIHKT-VSQIKNEGLG-RSEKPDWVTVR 404
E+++W+ GG +A T + + + G K+EI + +++++ E + ++KP + V
Sbjct: 366 VEIKKWWSEGGSSAETTAAGEGLTSAQQGQKSEIMASNLAELQPEEIAPVTDKPTFAWVC 425
Query: 405 AFITFIKSD-SFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQ 463
A K D + YTA P + NKKV +S +W C+ Q D C+ RY+++ + Q
Sbjct: 426 AHTVMCKPDQTMYYTATP----EEGNNKKVIESDGKWYCEANGQTYDTCERRYIMRFKAQ 481
Query: 464 DQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEE 523
D + W+ AF E ++ G A E++ LK D + ++ + F +K+ E
Sbjct: 482 DSSEGAWLNAFNEEATKMFGMTANEMHELKE--NDFAAYERAVKKMTCQHWSFLVKVVTE 539
Query: 524 LYGDEQRVKITVIRADQVNYSSESRYLL 551
Y E + ++T ++ + VNY++ES+ LL
Sbjct: 540 EYQGESKRRMTAVKCNPVNYAAESKKLL 567
>gi|302687831|ref|XP_003033595.1| hypothetical protein SCHCODRAFT_53289 [Schizophyllum commune H4-8]
gi|300107290|gb|EFI98692.1| hypothetical protein SCHCODRAFT_53289, partial [Schizophyllum
commune H4-8]
Length = 432
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 142/441 (32%), Positives = 236/441 (53%), Gaps = 27/441 (6%)
Query: 118 IAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRF 177
IA + Y W IKARV K +R ++N RG G +F+ LDS GEIR T FN VDR
Sbjct: 1 IATIALYNSNWTIKARVVTKSAIRTWSNNRGSGSLFNVTFLDS-TGEIRATGFNQAVDRL 59
Query: 178 YEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRH 237
Y++++VGRV+ ++K ++ A++ F+++ N++E+ LE ++++ C ++ D +P +F F
Sbjct: 60 YDVLQVGRVFFVTKARVELAKRKFSNVNNDYELHLEQNTSIEPCLDDAD-VPVIKFDFVK 118
Query: 238 ISEIESAENNSIVDVIGIVISVNPSVPILRKN-GMETQRRILNLKDTSGRSVELTLWGDF 296
I ++ + E +S DVIG+V+ + I K+ ++R L + D SG SV +TLWG+
Sbjct: 119 IDQLLTTEKDSSCDVIGVVVDCSEVSEIATKSTNRAAKKRELTIADDSGYSVRVTLWGET 178
Query: 297 CNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFD 356
K + +PV++ K KV DF G+S+ + S+ +++N D A+ ELR+WFD
Sbjct: 179 AEKYSE--------AGYPVIAFKGVKVGDFGGRSLTMLTSSLMYVNLDHADTAELRDWFD 230
Query: 357 SGGKNAATVSISREIAAGGAK--NEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDS 414
+ GK+ + + ++ + + +SQI++ G SE +VRA I IK+
Sbjct: 231 NTGKHRDFTAHTSSTSSSHYSFDHGDQRDLSQIRDATRGMSETTSNYSVRAMIMDIKAKP 290
Query: 415 FCYTACPLMIGDRQCNKKVTQ-SGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTA 473
Y AC C+KKV + S RW C++CN DYRY L I D TG A
Sbjct: 291 LAYPACR----SPGCSKKVVEISDGRWLCEKCNTSHSSPDYRYTLHILIGDATGTMLFQA 346
Query: 474 FQESGEEILGCPAKELYMLK----YELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQ 529
F + G+ ILG A + ++ Y+ D+ R+ + F + + E Y E
Sbjct: 347 FDDVGKVILGMSANAVIAMREANNYQGTDNALSRATKRT-----WNFVCRTRNEAYDGEP 401
Query: 530 RVKITVIRADQVNYSSESRYL 550
R++ + RA+ +++ E++ L
Sbjct: 402 RLRYEITRAEPIDFLEEAQEL 422
>gi|115398417|ref|XP_001214800.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114192991|gb|EAU34691.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 588
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 148/446 (33%), Positives = 243/446 (54%), Gaps = 34/446 (7%)
Query: 109 NEAPAR---------IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLD 159
N APAR + PI A++PY +W IKAR T+K +++ + N + GK+FS +LLD
Sbjct: 155 NRAPARPPVAPGHATMYPIEAISPYCHKWTIKARCTSKTNIKTWQNTKSTGKLFSVNLLD 214
Query: 160 SDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGS-LKPAQKNFNHLKNEWEIFLEATSTV 218
D GEIR T FN D Y++ + G VY IS ++ A+K F +L N++E+ E + V
Sbjct: 215 -DSGEIRATGFNEQCDALYDLFQEGGVYYISTPCRVQIAKKQFTNLNNDYELTFERDTVV 273
Query: 219 DLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMET-QRRI 277
+ ++ D +P+ +F+F I +++S E ++ +DVIG++ I+ K + +R
Sbjct: 274 EKAEDQSD-VPQVRFNFTTIGDLQSVEKDTTIDVIGVLKEAGECSQIVSKTTSKPYNKRE 332
Query: 278 LNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFP--VLSVKSGKVNDFSGKSIGTIP 335
L L D +G SV LT+WG +D P V++ K KV+DF G+S+ +
Sbjct: 333 LTLVDNTGFSVRLTIWG----------ATAMDFNVSPEAVVAFKGVKVSDFGGRSLSLLS 382
Query: 336 STQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGA--KNEIHKTVSQIKNEGLG 393
S + ++PD EAH L+ W+D+ G++ S + +A + K + KT+ Q+K E LG
Sbjct: 383 SGSMTVDPDIEEAHRLKGWYDAQGRDENFTSHASLSSATTSTMKADSFKTIGQVKEEQLG 442
Query: 394 RSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQ-SGNRWQCDRCNQEIDEC 452
SE + +++A + +IK ++ Y AC L G CNKKVT+ +W C+RC +
Sbjct: 443 MSEDAAYFSLKATVIYIKQENVYYPAC-LSEG---CNKKVTELDPGQWHCERCEKTYPHP 498
Query: 453 DYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFN 512
+YRY++ + D TG W++ F E G ++G A EL L+ D+ GEI ++
Sbjct: 499 EYRYIMLINVSDHTGQLWLSCFDEVGRLMMGTSANELSALRE--NDEKAAGEIFQNANCR 556
Query: 513 QYLFRLKIKEELYGDEQRVKITVIRA 538
+ FR + K + + +QR++ V A
Sbjct: 557 TWNFRCRAKTDHFDGQQRIRYQVSSA 582
>gi|291221744|ref|XP_002730881.1| PREDICTED: replication protein A1-like [Saccoglossus kowalevskii]
Length = 585
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 151/475 (31%), Positives = 238/475 (50%), Gaps = 46/475 (9%)
Query: 83 VRSFQPTVQPPYQPPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRR 142
+ S +PT PY N P + +++ PIA+L PYQ RW I+ARVT KG++R
Sbjct: 142 LMSSRPTTTMPYNAA-NEMPKMPTTPSGGMSKVFPIASLTPYQNRWTIRARVTNKGNIRH 200
Query: 143 YNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFN 202
+NN+RG+G +FS DL+D D EIR T FN +++++++VG+VYLIS+G+LK A K +
Sbjct: 201 WNNSRGEGCLFSMDLID-DSAEIRATAFNDQCKKYFDMVQVGQVYLISRGTLKTANKQYT 259
Query: 203 HLKNEWEIFLEATSTVDLCTEEDDS-IPKQQFSFRHISEIESAENNSIVDVIGIVISV-N 260
+KN++E+ + + V+LC + + S +P QF F+ I ++E +++VDVIG+ S +
Sbjct: 260 SIKNDYEMSFTSETVVELCNDAEASDVPTVQFDFKQIGQLEDIPKDTMVDVIGVCKSFSD 319
Query: 261 PSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKS 320
S + R E +R L+L D S + V LTLWG + +V F
Sbjct: 320 VSTIVTRSTNRELSKRELHLVDDSEKVVTLTLWGTDLTRFW-----IVRTRTFSNCPASW 374
Query: 321 GKVNDFSGKSIGTIPSTQ---LFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAK 377
+D + + I T+ +++ P H + W+D G SIS + GG
Sbjct: 375 ATFHDV--QVVCVIYRTREGFVYLRP----THTI-HWYDGEGNCKTITSISEQRTGGGGG 427
Query: 378 NEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQ-S 436
K ++K +GLG EK ACP +CNKKV + S
Sbjct: 428 TN-WKNFIEVKKQGLGSGEK---------------------ACP----SAECNKKVVENS 461
Query: 437 GNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYEL 496
++C++C +E + YR LL D WVT FQ+ + ILG E +
Sbjct: 462 DGSYRCEKCAKEYPDFKYRMLLVINTVDFGDGQWVTCFQDQAQVILGGNTAEHIGSLKDS 521
Query: 497 QDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLL 551
++ F + + F Y R++IK+E Y DE R+K + + A ++Y SR L+
Sbjct: 522 NNESEFEAVFQEANFKSYNLRMRIKQETYNDETRLKCSCVEAKPLDYKEHSRRLI 576
>gi|167519220|ref|XP_001743950.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777912|gb|EDQ91528.1| predicted protein [Monosiga brevicollis MX1]
Length = 540
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 145/448 (32%), Positives = 233/448 (52%), Gaps = 41/448 (9%)
Query: 114 RIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAV 173
R IP+ +LNPY RWAI+ RV AK +R YN+ RG+GK+FS DL+D+ GEIR T FNA
Sbjct: 124 RAIPLTSLNPYDRRWAIRVRVVAKPPIRTYNSDRGEGKIFSVDLVDA-SGEIRATGFNAD 182
Query: 174 VDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQF 233
DR Y + E +VY+I G +KP + FN L +E+EI ++T+TV TE D +
Sbjct: 183 CDRLYPLFEKNKVYMIQGGRIKPKNRRFNQLSHEYEITFDSTTTV---TESKD---MGAY 236
Query: 234 SFRHISEIESA----ENNSIVDVIGIVISVNPSVPIL-RKNGMETQRRILNLKDTSGRSV 288
+F+ +E+E+ + + D++ ++ V I+ R E +R + L D S+
Sbjct: 237 NFKSFAELEAMPITRDTMAFADILAVIKEVADVTTIVTRAAQKELSKREVTLVDKDNVSL 296
Query: 289 ELTLWGDFCNKEGQKLQEMVDVGFFP--VLSVKSGKVNDFSGKSIGTIPSTQLFINPDFA 346
TLW G++ + VD G P V+++K+ +++DF+G+S+ ++ INPD
Sbjct: 297 SCTLW-------GKEAEGFVDAGGHPGVVMAIKAARISDFNGRSLSVASNSNYSINPDLK 349
Query: 347 EAHELREW--FDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVR 404
EAHEL+ W G ++ + + A+ H T + GL +K V
Sbjct: 350 EAHELKGWCVLIFGSRSRVCMGFDK----WNARQFWHLTATV----GLP-DDKSVAFQVT 400
Query: 405 AFITFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQ 463
I ++KSD+ Y ACP CNKKV +S ++C +C + E YR L I
Sbjct: 401 GTILYVKSDNIYYQACP------TCNKKVVEESDGSYECQKCAKSYKEFKYRLLTSFSIG 454
Query: 464 DQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEE 523
D +G W+ +F E E +LG A E+ + D RF + F + FR + + +
Sbjct: 455 DFSGSQWLQSFSEVAESVLGHSADEIG--SWSANSDPRFTTALADATFKTWTFRCRARTD 512
Query: 524 LYGDEQRVKITVIRADQVNYSSESRYLL 551
Y D+ R++++V A ++Y +S+ ++
Sbjct: 513 TYNDQSRLRVSVASAVPIDYVQDSKRMV 540
>gi|424513270|emb|CCO66854.1| predicted protein [Bathycoccus prasinos]
Length = 587
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 157/510 (30%), Positives = 267/510 (52%), Gaps = 47/510 (9%)
Query: 78 NAGSIVRSFQ---PTVQPPYQPPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARV 134
N+ ++VR F P ++ P + R PIA+LNPYQ +W IKA++
Sbjct: 82 NSEALVREFSFVDENASPEFKTPGATGGGKTVPGVVNSRRSQPIASLNPYQPQWTIKAKL 141
Query: 135 TAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSL 194
KG+ R Y NA+G+GKV + +L+DS+G I+ T + V+R+ ++EVG++Y +SKGSL
Sbjct: 142 AVKGNTRTYRNAKGEGKVLTVELVDSEGTAIQATLWREAVERYENVLEVGKLYYVSKGSL 201
Query: 195 KPAQKNFNHLKNEWEIFLEATSTVDLCTEEDD------SIPKQQFSFRHISEIESAENN- 247
+PA + + + N++E+ L+ S + +EE+ I ++ F F I ++ N+
Sbjct: 202 RPANRQYTTVNNDYEMSLDGKSEIVEASEEEQLESAAKKIFEKAFEFVSIGDLAKRVNSK 261
Query: 248 -SIVDVIGIVISVNPSVPILRK-NGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQ 305
+ DV +V SV + RK + E Q+R L L D S +V+LTLW ++G+KL+
Sbjct: 262 RATCDVCAVVKSVADLSAVKRKSDNSEIQKRELTLCDESSSTVQLTLWNALATEQGEKLK 321
Query: 306 EMVDVGFFPVLSVKSGKVNDFSGKSIGTIPST--QLFINPDFAEAH-----------ELR 352
EM + PV+ V+S +V ++ G S+GT+ + Q+F + A+A E
Sbjct: 322 EMTN----PVIIVRSVRVTEYEGVSLGTLGKSEMQIFELDEAAKASVEEGEVPEKAIETA 377
Query: 353 EWFDSGGKNAATVSISREIAA------GGAKNEIHK-TVSQIKNEGL-GRSEKPDWVTV- 403
+WF G+N AT + E A GG + + T+ + E + S+KP V
Sbjct: 378 KWFKENGEN-ATFKTAAEGAGLSVQQRGGKLAPLERQTLVDFQPEEIPSASDKPKMCIVP 436
Query: 404 RAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQ 463
RA I I+ + Y A P + N KV + +W C + + C RY++ A+I
Sbjct: 437 RASILTIREGTMWYCATP----EEGNNAKVEEENGQWYCAKNQKTYATCKRRYIMGAKIA 492
Query: 464 DQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSR--VFNQYLFRLKIK 521
D++G W+T F + GE++ G A E++ +++ D ++ I+R+ + F+LK K
Sbjct: 493 DESGSCWLTLFNDDGEKLFGHTADEMH--EFQENDSDKYDAILRAAQGAKKSFTFKLKSK 550
Query: 522 EELYGDEQRVKITVIRADQVNYSSESRYLL 551
E Y +E R K+ + + +++++ESR LL
Sbjct: 551 VEEYNNENRRKVLTMSMNPIDFAAESRSLL 580
>gi|323450756|gb|EGB06636.1| hypothetical protein AURANDRAFT_71962 [Aureococcus anophagefferens]
Length = 1589
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 151/448 (33%), Positives = 241/448 (53%), Gaps = 35/448 (7%)
Query: 118 IAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRF 177
I+ LNPYQ R+ IKARVTAKG +R +N G +FS DLLD GEIR T F V D+
Sbjct: 908 ISELNPYQQRFTIKARVTAKGPMRTWNKPTSSGNLFSVDLLDGS-GEIRGTFFKEVADKV 966
Query: 178 YEIIEVGRVYLI--SKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSF 235
+ ++E G+VY+ + G LKP+ K + + +E+E+ TV+ ++D +I + +
Sbjct: 967 FPLLEEGKVYVFQETSGRLKPSNKQYTSIPHEFEVTF-GNVTVE-PADDDGAIARIVGDW 1024
Query: 236 RHISEIESA----ENNSIVDVIGIVISVNPSVPIL-RKNGMETQRRILNLKDTSGRSVEL 290
+ IS E N VD++G++ + P+ I ++ G E +R + L D SG V L
Sbjct: 1025 KKISMFADGGGPREGN--VDIVGVIKAAFPAGQITSKRTGQELTKREVVLCDDSGYDVRL 1082
Query: 291 TLWGDFCNKEGQKLQEMVDVGFF---PVLSVKSGKVNDFSGKSIGTIPSTQL-FINPDFA 346
T WG+ + D FF PVL+ K +V+DF G S+ + +QL F +
Sbjct: 1083 TFWGELA---------LRDDAFFEAQPVLAAKGLRVSDFGGVSLSSGFGSQLIFDGQEDP 1133
Query: 347 EAHELREWF-DSGGKNAATVSISREIAAGGAKNEIHKTV--SQIKNEGLGRSEKPDWVTV 403
E+ LR W+ + GG+ A TV+++ GA + IK LG EKPD+VT
Sbjct: 1134 ESLRLRAWWTEGGGREAPTVALTGASGGSGAPAAFGDRIVLDDIKGRQLGFGEKPDYVTF 1193
Query: 404 RAFITFIKSDSFCYTACPLMIGDRQCNKKVTQ-SGNRWQCDRCNQEIDECDYRYLLQAQI 462
+ + F+K+D Y AC C KKV Q S W C++C EC RYL+ +
Sbjct: 1194 KGTLNFVKTDRLWYEAC----AQEGCQKKVVQNSDGTWHCEKCQATNAECKRRYLMSSTF 1249
Query: 463 QDQTGLTWVTAFQESGEEI-LGCPAKELYMLKYELQ-DDVRFGEIIRSRVFNQYLFRLKI 520
D + +WV+AF + +I LG A +L K E++ +D +F + ++ +F QY+ ++++
Sbjct: 1250 VDDSAQSWVSAFNDHATKIFLGVNADDLAAYKEEVENEDGKFEDYMKQFLFKQYVVKVRV 1309
Query: 521 KEELYGDEQRVKITVIRADQVNYSSESR 548
K E++ ++ RVK +++ ++Y +ESR
Sbjct: 1310 KSEVWQEQSRVKASIVDIFDLDYVAESR 1337
>gi|449688518|ref|XP_004211765.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like,
partial [Hydra magnipapillata]
Length = 398
Score = 231 bits (589), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 140/361 (38%), Positives = 210/361 (58%), Gaps = 26/361 (7%)
Query: 11 IGNPKIFSESELTAQKTIPSNNLPQPVRVNNYSAPNSGTFNLQNSGTFNSQNPGSFSTPN 70
IG P S+ LT Q+ N LP P++ N + G+ LQN S S ST N
Sbjct: 56 IGEPVQISDL-LTEQE----NLLPPPIKKENVN----GSSKLQNI----SNQIKSASTNN 102
Query: 71 SGTFRAPNAGSIVRSFQPTV-QPPYQPPPNFRNHGP-ILKNEAPARIIPIAALNPYQGRW 128
+ PN + + +P+ Q P + G + + + PI++L PYQ RW
Sbjct: 103 TKNLPVPNKP--LSNQKPSAYSAANQKPSGYSTAGAGSVVDSNSKSVFPISSLTPYQNRW 160
Query: 129 AIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYL 188
I+AR+T K +R ++N+RGDGK+FS DL+D + GEIR T FN VVD++Y+++E+G+VY
Sbjct: 161 TIRARITNKSSIRTWSNSRGDGKLFSIDLVD-ESGEIRATAFNEVVDKYYDLLEIGKVYY 219
Query: 189 ISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNS 248
I+KGSLK A K ++ LKN++E+ L S V+LC + D +P QF+F+ I IE ++
Sbjct: 220 ITKGSLKTANKQYSSLKNDYEMTLNNDSLVELCNDLCD-LPTLQFNFKQIKSIEDVNKDA 278
Query: 249 IVDVIGIVISVNPSVPILRK-NGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEM 307
++D++GIV S + I K + +R + + D SG +V+ T+WG E +K +E
Sbjct: 279 LIDIVGIVKSSSEMQQITSKATNKQVWKRDITIVDQSGSAVQATIWG----SEAEKFEEY 334
Query: 308 VDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSI 367
D PV+++K KV+DF G+S+ + S+ INPD EA+ELR WFD+GG N T SI
Sbjct: 335 TDKN--PVVAIKGAKVSDFGGRSLSILNSSIFHINPDIPEAYELRGWFDNGGINEQTTSI 392
Query: 368 S 368
S
Sbjct: 393 S 393
>gi|313234321|emb|CBY10388.1| unnamed protein product [Oikopleura dioica]
Length = 589
Score = 231 bits (589), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 145/455 (31%), Positives = 242/455 (53%), Gaps = 30/455 (6%)
Query: 111 APARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCF 170
A R + + L PY +W IKARV KG L+ Y NA+G GK+F+F +D ++++ F
Sbjct: 147 ADGRYMSVMTLTPYMNKWCIKARVVQKGPLKEYQNAKGAGKLFAF-TVDDGTCNLKISAF 205
Query: 171 NAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPK 230
N VD+F+ I+E G+V IS G LKP +N +++E L +T++ ++ D IP+
Sbjct: 206 NDEVDKFFNIVEKGKVVTISNGQLKPKNAQYNSTNHDYECTLGRMTTIEEVMDDCDDIPQ 265
Query: 231 QQFSFRHISEIESAE-NNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGR-SV 288
F+F IS+I S + VDV ++ V I + G + ++R L + D S + +
Sbjct: 266 MTFNFEPISKIISDRAKGAFVDVCAVINEVGAIDTINTRAGKQLEKRDLEIVDDSTKEKM 325
Query: 289 ELTLWG----DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPD 344
TLWG DF GQ V++VK+ V +F GK++ +++ + D
Sbjct: 326 RCTLWGQQAVDFSASRGQ------------VMAVKAASVGEFQGKTLSVGRDSEIIL--D 371
Query: 345 FAEAH--ELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVT 402
FAE H +L W+ G++AA S ++GG +NE+ S ++ +KP W
Sbjct: 372 FAEDHGQKLNVWWTQEGQDAAFEGQSGAGSSGGKRNEMVLLDSIMQGANYQTDDKPYWFN 431
Query: 403 VRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQ 461
+ ++T+IK + Y CP D++CNKK+ + + ++C++CNQ +YR ++QA
Sbjct: 432 SKCYLTYIKKERMMYKGCPGK-DDQKCNKKLIEEDDGMYRCEKCNQNFQNFNYRIMMQAA 490
Query: 462 IQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIK 521
+ D G + T F E+ E+ILG PA EL + D F + I ++ +++ + K
Sbjct: 491 VTDGRGQQYCTFFGETAEQILGKPADELGEMFN--SDGNEFDDFINTKSCLEFILGGRAK 548
Query: 522 EELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
E+Y DEQR+K+ R Q+++ ++Y LDL S+
Sbjct: 549 CEIYQDEQRLKVAAQRVAQIDF---NKYGLDLASR 580
>gi|71756127|ref|XP_828978.1| replication factor A 51kDa subunit [Trypanosoma brucei TREU927]
gi|70834364|gb|EAN79866.1| replication factor A, 51kDa subunit, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|261334907|emb|CBH17901.1| replication factor A, 51kDa subunit, putative [Trypanosoma brucei
gambiense DAL972]
Length = 463
Score = 224 bits (572), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 140/432 (32%), Positives = 238/432 (55%), Gaps = 33/432 (7%)
Query: 120 ALNPY-QGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFY 178
+L+P+ G+W I+ARVT K ++R +N GK+FSF L+D + IR T FN VD F
Sbjct: 14 SLSPFLGGKWWIRARVTDKSEIRTWNKPTSQGKLFSFTLID-ESASIRATVFNEAVDMFN 72
Query: 179 EIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTE-EDDSIPKQQFSFRH 237
+I G+VY S G +K A + F+++ N++E+ + T + + SIP Q+++F
Sbjct: 73 PLIVNGQVYYFSGGQVKNANRKFSNVNNDYELSFDNTCQISAARDVVSSSIPLQRYNFVP 132
Query: 238 ISEIESAENNSIVDVIGIVISVNPSVPIL-RKNGMETQRRILNLKDTSGRSVELTLWGDF 296
I+ ++ E S+VDV+ +V++V I+ R G E RR + + D++ +++TLW +
Sbjct: 133 IAILKQREVGSLVDVLAVVLNVEELGTIVQRSTGRELVRRTVKVADSTA-GIDVTLWNEN 191
Query: 297 CNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFD 356
+ + VL+++ KV F G ++ T + +NP+ + +LREWF+
Sbjct: 192 AKEWPHQPG--------TVLAMRQLKVGSFDGVTLSTTMQSSFDVNPNIPDVKKLREWFE 243
Query: 357 S-GGKNAATVSI----SREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIK 411
S GG++ +++S+ + +A+ G +K + I EGLG+ KPD++ +R ++K
Sbjct: 244 STGGRDVSSLSMQGNNALGLASSGETYRGYKYIDDITTEGLGKGPKPDYIDLRCVPVYLK 303
Query: 412 SDSFCYTACPLMIGDRQCNKKVT---QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGL 468
D+ Y ACP QCNKKV G+R++C++C+Q I RYL+ Q+ D
Sbjct: 304 QDTQWYDACP------QCNKKVMLEGAMGDRFRCEKCDQSIVPTQ-RYLVSIQVTDNVSQ 356
Query: 469 TWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYG-- 526
W+T F ESG E G A EL + + +D + ++ + R+ L RL++KEE G
Sbjct: 357 VWLTLFNESGAEFFGMTAPELK--RRQEEDPMFVTKVAQMRMNRPVLMRLRVKEEGLGGN 414
Query: 527 -DEQRVKITVIR 537
D +RV++ V+R
Sbjct: 415 EDSERVRLNVVR 426
>gi|290999555|ref|XP_002682345.1| single-stranded DNA-binding replication protein A large subunit
[Naegleria gruberi]
gi|284095972|gb|EFC49601.1| single-stranded DNA-binding replication protein A large subunit
[Naegleria gruberi]
Length = 598
Score = 221 bits (563), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 131/446 (29%), Positives = 236/446 (52%), Gaps = 27/446 (6%)
Query: 117 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDR 176
PI+ LNPY W IKARVT K D++ ++ G +FS +LLD GG+IR T FN V +
Sbjct: 167 PISNLNPYDKVWVIKARVTQKSDMKHWDKGTSKGSLFSIELLDEYGGQIRATFFNDVAKK 226
Query: 177 FYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFR 236
+Y+ I+ VY S G LK A + F + + +EI + + + D IP F+
Sbjct: 227 YYDAIKERSVYFFSGGKLKDANRKFTTIPHPYEITFDRDTVIQ--NARDSEIPTDTFNCT 284
Query: 237 HISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGR---SVELTLW 293
+ ++ + E+N I+DV G+V ++ + KN +T+R ++L D S +V+LT+W
Sbjct: 285 RLCDMTNVEDNMILDVAGVVQNIGETKEFTTKNNRKTKRCNISLIDDSSSPFCTVDLTIW 344
Query: 294 GDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELRE 353
GD C+ D+ V+ +KS + +++ G S+ TI ST++F +P +L E
Sbjct: 345 GDMCDTH--------DMQQGDVVILKSVRKSNYGGVSLNTINSTRIFKDPGIPIYQQLSE 396
Query: 354 WF--DSGGKNAATVSISREIAAGGAKNEIHK--TVSQIKNEGLGRSEKPDWVTVRAFITF 409
W+ + G + + ++++ AA ++ + ++ KN + PD++T+RA++++
Sbjct: 397 WYQNNEGSFDGEGIKLTQKQAAVNSERTFKRKNVIADCKNMSVDTVTAPDYLTIRAYVSY 456
Query: 410 IKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLT 469
IK + + Y AC +++CNKKV Q+ + C CN D C ++L I D TG
Sbjct: 457 IKHELW-YDACT----NKECNKKVQQNEGIYHCSSCNHSSDTCTRKFLANLGITDWTGKQ 511
Query: 470 WVTAFQESGEEILG-CPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDE 528
+ AF ++ E++ A ++ E + ++ + F +Y+F +++ E E
Sbjct: 512 YCNAFNQAVEKLFSDMTADDMCARAAEPE---YMPYLLGEKTFTRYVFTVRVTTET-TKE 567
Query: 529 QRVKITVIRADQVNYSSESRYLLDLI 554
++K T+IR ++Y+ E++ +L LI
Sbjct: 568 PKLKFTIIRVTPIDYAREAKSILSLI 593
>gi|156089527|ref|XP_001612170.1| replication factor-a protein 1 (rpa1) family protein [Babesia
bovis]
gi|154799424|gb|EDO08602.1| replication factor-a protein 1 (rpa1) family protein [Babesia
bovis]
Length = 684
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 168/535 (31%), Positives = 263/535 (49%), Gaps = 48/535 (8%)
Query: 43 SAPNSGTFNLQNSGTFNSQNPGSFSTPNSGTFRAPNAGSIVRSF-QPTVQPPYQPPPNFR 101
S P+S T N S + P SFS +S N G I + Q ++ P P
Sbjct: 174 SMPSSNTINTSTSYAQSHHAPTSFSHDSS-----TNHGPIRNTDDQLMLKKPQSAPYATN 228
Query: 102 NHGPILK--NEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLD 159
P++K + + I IA L Y +W+I+ARV K ++++NN G+G++FS DL D
Sbjct: 229 TSKPVVKVGDGNNSGYISIADLTIYTPKWSIRARVLNKTHIKKFNNQWGEGQLFSVDLCD 288
Query: 160 SDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVD 219
+ G+IR T F V ++Y IE G+VY IS G L+PA K FN L + E+ L+ S +
Sbjct: 289 -NSGDIRATLFGEAVTKWYNFIEEGQVYSISGGQLRPANKKFNSLSHACEMSLDENSQI- 346
Query: 220 LCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKN-GMETQRRIL 278
L +D SIP + +F I ++E + I+DVIG+V N K+ G + +R +
Sbjct: 347 LLDRDDQSIPLIRCNFVPIKQVERLSSGDIIDVIGVVARFNDIKSYQSKSTGTTSDKREI 406
Query: 279 NLKDTSGRSVELTLWGDFCNKEGQKLQEMV--DVGFFPVLSVKSGKVNDFSGKSIGTIPS 336
L D+SG SV +TLW +K+Q+ + ++ P++++K +VN++ GK + TI +
Sbjct: 407 LLCDSSGSSVWVTLW-------NKKVQQFLTSELETHPIIAMKGVRVNEWQGKKLDTIGT 459
Query: 337 TQLFINPDFAEAHELREWFDSGGK----NAATVSIS---REIAAGGAKNEIHKTVSQIKN 389
T + INP E +L+ W+ + G +A SI +I + GA + Q K
Sbjct: 460 THITINPAVPEVAKLKNWWATEGSQMQFDAGRSSIDNNIEDIISIGALTQAANQAYQFK- 518
Query: 390 EGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEI 449
LG S T R + I+ ++F + AC +C +K+ +W C RC +
Sbjct: 519 -ALGDSGIT--FTARGMVEVIRENTFSWPACI------ECQRKMVNELGQWVCSRC-KCT 568
Query: 450 DECDYRYLLQAQIQDQTGLTWVTAFQESGEEIL-GCPAKELYMLKYELQ---DDVRFGEI 505
+ + Y+L +I D TG W TA G+EI+ G PA E+ L D F I
Sbjct: 569 RQPRHTYILSMKISDDTGHLWATASSIVGDEIMNGIPAAEVLALAGNNDINVDGKNFMNI 628
Query: 506 IRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKSFRK 560
+Y+F++K+ E Y DE R+K V +A ++ R LD + K K
Sbjct: 629 FEEARLTEYIFKIKVYTETYMDEPRIKYRVTKAIKL------RRCLDTVIKCLIK 677
>gi|154340545|ref|XP_001566229.1| putative replication factor A, 51kDa subunit [Leishmania
braziliensis MHOM/BR/75/M2904]
gi|134063548|emb|CAM39729.1| putative replication factor A, 51kDa subunit [Leishmania
braziliensis MHOM/BR/75/M2904]
Length = 467
Score = 219 bits (558), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 143/442 (32%), Positives = 243/442 (54%), Gaps = 37/442 (8%)
Query: 114 RIIPIAALNPY-QGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
+I PI +L P+ G+W I+ARVT K D+R +N GK+FSF L+D + IR T FN
Sbjct: 8 QIQPIDSLTPFLGGKWWIRARVTDKTDIRTWNKPTSQGKLFSFTLID-ESAAIRATVFND 66
Query: 173 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDS--IPK 230
VD F +I G+VY S G +K A + F+++ N++E+ + +S + L ++ + +P
Sbjct: 67 AVDTFEPLIVNGQVYYFSGGQVKNANRRFSNVNNDYELTFDRSSEIMLARQDTSTAALPM 126
Query: 231 QQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKN-GMETQRRILNLKDTSGRSVE 289
Q+++F I ++ E S+VDV+G+V+ V+ I +K+ G E +R + + D + +VE
Sbjct: 127 QRYNFVPIELLKQREVGSLVDVLGVVLKVDDVSSITQKSTGRELVKRNVKMGDMTA-AVE 185
Query: 290 LTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINP-DFAEA 348
+T W D G VG V++++ KV F G ++ + T++ +NP D +
Sbjct: 186 VTFWNDEAQTWGYP------VG--TVVALRQLKVGSFDGVTLSSTYQTKIDVNPTDLPDV 237
Query: 349 HELREWF-DSGGKNAATVS---ISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVR 404
+L W+ +GG N ++S + AGG + K + +I++EG+GR KP++V VR
Sbjct: 238 KKLATWYVSTGGANVTSLSSQGLGAINGAGGENDRGRKYLDEIQSEGIGRGLKPEYVDVR 297
Query: 405 AFITFIKSDSFCYTACPLMIGDRQCNKKVTQ---SGNRWQCDRCNQEIDECDYRYLLQAQ 461
+ K D+ Y ACP CNKKVT+ G+R++C++C++ + RYL+ Q
Sbjct: 298 CVPIYFKQDAQWYDACP------TCNKKVTEEGAQGDRFRCEKCDKTVTPTQ-RYLVSIQ 350
Query: 462 IQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIK 521
+ D W+T F E+G E G A EL E D + ++ + R+ + RL++K
Sbjct: 351 VTDNVSQAWLTLFNEAGIEFFGMEAAELKRRAQE--DPLYIAKLAQGRMNRPVVMRLRVK 408
Query: 522 EE-----LYGDEQ-RVKITVIR 537
EE + G+E R++++V+R
Sbjct: 409 EETSSNAMTGEESDRLRMSVVR 430
>gi|324505436|gb|ADY42337.1| Replication factor A 73 kDa subunit [Ascaris suum]
Length = 613
Score = 218 bits (554), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 151/500 (30%), Positives = 242/500 (48%), Gaps = 31/500 (6%)
Query: 70 NSGTFRAPNAGSIVRSF-----QPTVQPPY----QPPPNFRNHGPILKNEAPARIIPIAA 120
N +R NA +I +S Q QP Y PP R I +N P R+I
Sbjct: 128 NERDYRGMNANAIGQSVSHVQPQGNGQPQYIARRNPPTPNRATSLIGQNLTPIRLI---- 183
Query: 121 LNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEI 180
PY +W I VTAK DLR ARG+ KVF+F++ D +GG IR+ F D+FY I
Sbjct: 184 -TPYVNKWRICGVVTAKEDLRDVKTARGELKVFNFEVTDEEGGCIRIAAFGDTADKFYAI 242
Query: 181 IEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTE-EDDSIPKQQFSFRHIS 239
++ G +Y IS G++K A K +N +++E+ + + + + C + E P+ + ++
Sbjct: 243 VQKGSMYYISGGTVKQANKRYNTTGHDYELTMRSDTEISPCIDRERIEEPRLNLNVVPLA 302
Query: 240 EIESAENNSIVDVIGIVISVNPSVPIL-RKNGMETQRRILNLKDTSGRSVELTLWGDFCN 298
+ S+ +D+I I+ V+ + R G ++R L+L D SG V LTLWG+
Sbjct: 303 MV-SSRAGQCIDIIAIIDQVSELQQVTQRSTGALLEKRDLHLIDESGAVVVLTLWGEQAR 361
Query: 299 KEGQKLQEMVDVGFFPVLSVKSGKVNDFSGK-SIGTIPSTQLFINPDFAEAHELREWFDS 357
LQ + VK V +F+G S+ + ST++ INPD E+ L W+
Sbjct: 362 SHDVDLQHQ-------AVGVKGASVREFNGSYSLSALNSTRIEINPDCDESKALYVWYRE 414
Query: 358 GGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSE-KPDWVTVRAFITFIKSDSFC 416
+ I+ G + + + LGR+E K + V A I+ +K+D
Sbjct: 415 KRPSIDVKRITTGSMGGDSYARDLRLIGIADAMNLGRNEDKGAYFNVTAMISSLKADGAL 474
Query: 417 YTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQE 476
Y +C G C KKV + N+++C++CN +D Y LL ++ D +G WVT F+E
Sbjct: 475 YKSC----GTNGCKKKVIEMDNQYRCEKCNLTLDSFKYVLLLSMELSDFSGSHWVTVFEE 530
Query: 477 SGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVI 536
++LG A EL L + D + ++ + F +Y FR++ K E Y D +R+K +V
Sbjct: 531 KATKLLGKTAAELGDLLESNRLD-EYNDVFSAVRFREYTFRIRAKSEFYNDTERIKWSVF 589
Query: 537 RADQVNYSSESRYLLDLISK 556
+ V+Y L ++K
Sbjct: 590 ELNNVDYDKYVEELTKAVTK 609
>gi|303290622|ref|XP_003064598.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454196|gb|EEH51503.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 541
Score = 218 bits (554), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 133/453 (29%), Positives = 237/453 (52%), Gaps = 26/453 (5%)
Query: 118 IAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRF 177
IA+LNPY G W IKA++ +KG +R + NARG+G+V + +L+D +G I+ T + +D++
Sbjct: 95 IASLNPYTGNWTIKAKLASKGAVRTFRNARGEGRVCTIELVDDNGTAIQATMWKDAIDKY 154
Query: 178 YEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDD-SIPKQQFSFR 236
I+EVG+VY +S+GSL+PA + ++++ N++E+ L+ + C + D S + +
Sbjct: 155 DAIMEVGKVYYVSRGSLRPANRQYSNVNNDYEMSLDGKCDISPCEDPCDVSKMSRAYELV 214
Query: 237 HISEIESA-ENNSIVDVIGIVISVNPSVPILRK-NGMETQRRILNLKDTSGRSVELTLWG 294
I + + VDV+ V +V I RK + E Q R + L D + ++V LTLWG
Sbjct: 215 AIDALPTKIGTRGSVDVLACVAAVGELRAIRRKSDDSEVQVRDITLLDDTKKTVSLTLWG 274
Query: 295 DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPD----FAEAHE 350
+ ++G++L + V++++ +V D++G S+ T+ ++L + P A+A
Sbjct: 275 ELATEQGERLANEIGA----VVALRGLRVTDYNGVSLSTVQRSELIVEPSGDDIAAKADA 330
Query: 351 LREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDW-------VTV 403
LR W+ + G A T + +A ++ + P +
Sbjct: 331 LRAWYAAEGSTAETTAAGAGLATARGGAGAGAPAQRVDLKAFQPELLPPATNKYEVGILG 390
Query: 404 RAFITFIKSDS-FCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQ 461
A + +K D Y ACP + NKKV +S +W C+ + D C RY+L+ +
Sbjct: 391 CATVVLVKPDQPMYYCACP----EEGNNKKVVEESPGKWYCEATQKTYDSCRRRYILRLK 446
Query: 462 IQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIK 521
+ D G WV F E ++LGC A+EL+ L+ + + +++ F + +LK K
Sbjct: 447 VSDHAGGGWVNVFHEQACQMLGCDAEELHALRE--SNPAAYERKVKAAQFKPWGLKLKSK 504
Query: 522 EELYGDEQRVKITVIRADQVNYSSESRYLLDLI 554
E Y EQ+ ++TV+ V+Y++E+++LL LI
Sbjct: 505 TEEYQGEQKRRLTVLTCAPVDYAAEAKHLLSLI 537
>gi|407420060|gb|EKF38438.1| replication factor A, 51kDa subunit, putative [Trypanosoma cruzi
marinkellei]
Length = 465
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 147/452 (32%), Positives = 246/452 (54%), Gaps = 39/452 (8%)
Query: 107 LKNEAPARIIPIAALNPYQG-RWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEI 165
+++ + +I PI +L P+ G +W I+ARVT K D+R +N GK+FSF L+D + I
Sbjct: 1 MQHPSNQQIQPIDSLTPFLGGKWWIRARVTDKSDVRTWNKPTSQGKLFSFTLID-ESASI 59
Query: 166 RVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTE-E 224
R T FN VD F +I G+VY +S G +K A + F+++ N++E+ +++S + L +
Sbjct: 60 RATVFNDAVDLFNPLIVNGQVYYLSGGQVKNANRKFSNVNNDYELTFDSSSQISLARDPS 119
Query: 225 DDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKN-GMETQRRILNLKDT 283
+IP Q+++F I+ ++ E S+VDV+ +V+SV I +K+ G E +R + + D
Sbjct: 120 SATIPLQRYNFVPIAILKQREVGSLVDVLAVVLSVEELSSITQKSTGRELVKRNVKVGDI 179
Query: 284 SGRSVELTLWGDFCNKEGQKLQEMVDVGFFP--VLSVKSGKVNDFSGKSIGTIPSTQLFI 341
+ +VE+TLW D + + + P VL+++ KV F G ++ + +
Sbjct: 180 TA-AVEVTLWND----------QAKEWTYSPGTVLAMRQLKVGSFDGVTLSATFQSAFDV 228
Query: 342 NPDFAEAHELREWF-DSGGKNAATVSISREIAAGGAKNEIH---KTVSQIKNEGLGRSEK 397
NP+ + +L EW+ +GG++ +++S A A E + K I EGLGR K
Sbjct: 229 NPNIPDVKKLAEWYISTGGRDVSSLSSLGVGAGNNAGGENYRGRKYFDDISAEGLGRGPK 288
Query: 398 PDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT---QSGNRWQCDRCNQEIDECDY 454
D++ VR ++K D+ Y ACP QCNKKVT G R++C++C++++
Sbjct: 289 ADFIDVRCVPVYLKQDAQWYDACP------QCNKKVTLEGAQGERYRCEKCDRQVVPTQ- 341
Query: 455 RYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQY 514
RYL+ Q D W+T F E+G E G PA EL K + D + +I + R+
Sbjct: 342 RYLVSIQASDNVSQKWLTLFNEAGVEFFGMPATELK--KQQEADPMFVTKIAQMRMNRPV 399
Query: 515 LFRLKIKEE----LYGDEQ--RVKITVIRADQ 540
RL++KEE G E+ RV++TV+R ++
Sbjct: 400 QMRLRVKEESSSSAAGGEESDRVRLTVMRLNE 431
>gi|71664069|ref|XP_819019.1| replication factor A, 51kDa subunit [Trypanosoma cruzi strain CL
Brener]
gi|70884302|gb|EAN97168.1| replication factor A, 51kDa subunit, putative [Trypanosoma cruzi]
Length = 465
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 147/452 (32%), Positives = 246/452 (54%), Gaps = 39/452 (8%)
Query: 107 LKNEAPARIIPIAALNPYQG-RWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEI 165
+++ + +I PI +L P+ G +W I+ARVT K D+R +N GK+FSF L+D + I
Sbjct: 1 MQHPSNQQIQPIDSLTPFLGGKWWIRARVTDKSDVRTWNKPTSQGKLFSFTLID-ESASI 59
Query: 166 RVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTE-E 224
R T FN VD F +I G+VY +S G +K A + F+++ N++E+ +++S + L +
Sbjct: 60 RATVFNDAVDLFNPLIVNGQVYYLSGGQVKNANRKFSNVNNDYELTFDSSSQISLARDPS 119
Query: 225 DDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKN-GMETQRRILNLKDT 283
+IP Q+++F I+ ++ E S+VDV+ +V+SV I +K+ G E +R + + D
Sbjct: 120 SATIPLQRYNFLPIAILKQREVGSLVDVLAVVLSVEELSSITQKSTGRELIKRNVKVGDI 179
Query: 284 SGRSVELTLWGDFCNKEGQKLQEMVDVGFFP--VLSVKSGKVNDFSGKSIGTIPSTQLFI 341
+ +VE+TLW D + + + P VL+++ KV F G ++ + +
Sbjct: 180 TA-AVEVTLWND----------QAKEWAYSPGTVLAMRQLKVGSFDGVTLSATFQSAFDV 228
Query: 342 NPDFAEAHELREWF-DSGGKNAATVSISREIAAGGAKNEIH---KTVSQIKNEGLGRSEK 397
NP+ + +L EW+ +GG++ +++S A A E + K I EGLGR K
Sbjct: 229 NPNIPDVKKLAEWYISTGGRDVSSLSSLGVGAGNNAGGENYRGRKYFDDISAEGLGRGPK 288
Query: 398 PDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT---QSGNRWQCDRCNQEIDECDY 454
D++ VR ++K D+ Y ACP QCNKKVT G R++C++C++++
Sbjct: 289 ADFIDVRCVPVYLKQDAQWYDACP------QCNKKVTLEGAQGERYRCEKCDRQVVPTQ- 341
Query: 455 RYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQY 514
RYL+ Q D W+T F E+G E G PA EL K + D + +I + R+
Sbjct: 342 RYLVSIQASDNVSQKWLTLFNEAGVEFFGMPATELK--KQQEADPMFVTKIAQLRMNRPV 399
Query: 515 LFRLKIKEE----LYGDEQ--RVKITVIRADQ 540
RL++KEE G E+ RV++TV+R ++
Sbjct: 400 QMRLRVKEESSSSAAGGEESDRVRLTVMRLNE 431
>gi|407853189|gb|EKG06272.1| replication factor A, 51kDa subunit, putative [Trypanosoma cruzi]
Length = 465
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 147/452 (32%), Positives = 246/452 (54%), Gaps = 39/452 (8%)
Query: 107 LKNEAPARIIPIAALNPYQG-RWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEI 165
+++ + +I PI +L P+ G +W I+ARVT K D+R +N GK+FSF L+D + I
Sbjct: 1 MQHPSNQQIQPIDSLTPFLGGKWWIRARVTDKSDVRTWNKPTSQGKLFSFTLID-ESASI 59
Query: 166 RVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTE-E 224
R T FN VD F +I G+VY +S G +K A + F+++ N++E+ +++S + L +
Sbjct: 60 RATVFNDAVDLFNPLIVNGQVYYLSGGQVKNANRKFSNVNNDYELTFDSSSQISLARDPS 119
Query: 225 DDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKN-GMETQRRILNLKDT 283
+IP Q+++F I+ ++ E S+VDV+ +V+SV I +K+ G E +R + + D
Sbjct: 120 SATIPLQRYNFVPIAILKQREVGSLVDVLAVVLSVEELSSITQKSTGRELIKRNVKVGDI 179
Query: 284 SGRSVELTLWGDFCNKEGQKLQEMVDVGFFP--VLSVKSGKVNDFSGKSIGTIPSTQLFI 341
+ +VE+TLW D + + + P VL+++ KV F G ++ + +
Sbjct: 180 TA-AVEVTLWND----------QAKEWAYSPGTVLAMRQLKVGSFDGVTLSATFQSAFDV 228
Query: 342 NPDFAEAHELREWF-DSGGKNAATVSISREIAAGGAKNEIH---KTVSQIKNEGLGRSEK 397
NP+ + +L EW+ +GG++ +++S A A E + K I EGLGR K
Sbjct: 229 NPNIPDVKKLAEWYISTGGRDVSSLSSLGVGAGNNAGGENYRGRKYFDDISAEGLGRGPK 288
Query: 398 PDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT---QSGNRWQCDRCNQEIDECDY 454
D++ VR ++K D+ Y ACP QCNKKVT G R++C++C++++
Sbjct: 289 ADFIDVRCVPVYLKQDAQWYDACP------QCNKKVTLEGAQGERYRCEKCDRQVVPTQ- 341
Query: 455 RYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQY 514
RYL+ Q D W+T F E+G E G PA EL K + D + +I + R+
Sbjct: 342 RYLVSIQASDNVSQKWLTLFNEAGVEFFGMPATELK--KQQEADPMFVTKIAQLRMNRPV 399
Query: 515 LFRLKIKEE----LYGDEQ--RVKITVIRADQ 540
RL++KEE G E+ RV++TV+R ++
Sbjct: 400 QMRLRVKEESSSSAAGGEESDRVRLTVMRLNE 431
>gi|428166243|gb|EKX35222.1| replication protein A1, 70kDa, partial [Guillardia theta CCMP2712]
Length = 439
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 147/461 (31%), Positives = 242/461 (52%), Gaps = 39/461 (8%)
Query: 116 IPIAALNPYQGRWAIKARVTAKGDLRRY---NNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
+PIA ++PY G +KA++ +K D+RR+ NN D VFS +LD D +++VT +N
Sbjct: 1 VPIAMIHPY-GSCNVKAKLISKEDVRRFKGRNNT--DMAVFSAVVLD-DSSDMKVTFWNE 56
Query: 173 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQ 232
+++++ + VG+ Y+ SKGS K AQ +N+ K ++E+ + +T++ C EED P+
Sbjct: 57 QCEKYHDSLVVGQWYVFSKGSFKVAQSKYNNTKCQYEMTVSTNTTIERCLEED--APQVC 114
Query: 233 FSFRHISE---IESAENNSIVDVIGIVISVNP----SVPILRKNGMETQRRILNLKDTSG 285
S I + N VDVIG+V V ++ R +G + +R ++L D SG
Sbjct: 115 ISLYMIEVNCLLVEKGNLQNVDVIGVVQEVEALGEITIKQGRDSGKQKSKRNVSLVDKSG 174
Query: 286 RSVELTLWGDFCNKEGQKLQEMVDVGF---FPVLSVKSGKVNDFSGKSIGTIPSTQLFIN 342
++V +TLW + E D +L+V+ +V+D++G S+ T+ S+ L IN
Sbjct: 175 KTVSITLWDNHA--------EQFDTSHATNHSILAVRGARVSDYNGCSLSTLRSSMLQIN 226
Query: 343 PDFAEAHELREWFDS--GGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLG-RSEKPD 399
P+ EA +LREW+ S GK+ V + G K + + E LG + K D
Sbjct: 227 PETPEAKDLREWYSSCDSGKSFQPVGEGTQAGKGPGGPAPRKLIEAVSKESLGSNTSKAD 286
Query: 400 WVTVRAFITFIKSDS-FCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLL 458
T++A++T+ ++ + Y A P + KKV SG+ W + +ID C RY+
Sbjct: 287 IFTIKAYVTYSNTEKQWQYPANP------ENKKKVVASGDVWIDESTGTQIDTCQRRYIT 340
Query: 459 QAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRL 518
D TG W+T F E + ILG A ELY + E D V F + ++ F +Y+ ++
Sbjct: 341 TFAFMDLTGRQWLTCFDEHAQLILGKSADELYEI--ECTDKVAFEGVWKAAYFKEYMIKV 398
Query: 519 KIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKSFR 559
+ K E Y E R K +V+ + VNY SES++L+ I + +
Sbjct: 399 RAKAEEYKGETRTKFSVMSLEPVNYVSESQHLISEIRRYLK 439
>gi|359475570|ref|XP_003631705.1| PREDICTED: LOW QUALITY PROTEIN: replication factor A protein 1-like
[Vitis vinifera]
Length = 389
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 135/388 (34%), Positives = 219/388 (56%), Gaps = 24/388 (6%)
Query: 182 EVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEI 241
++G+VY I KG+LK A K F ++N++ + L S V+ + E+ IP+ +F F I E+
Sbjct: 8 QLGKVYYIXKGALKVANKQFKTVQNDYGMTLNENSEVEEASNEETFIPEAKFKFLXIEEL 67
Query: 242 ESAEN-NSIVDVIGIVISVNPSVPILRKNGME-TQRRILNLKDTSGRSVELTLWGDFCNK 299
N +VDV G+V SV+P++ I RK+ E +R + + D S +SV ++LW D
Sbjct: 68 GPYVNGKELVDVSGVVQSVSPTMTIRRKSTNEIVPKRDITIADKSKKSVVVSLWNDHATN 127
Query: 300 EGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWF-DSG 358
G +L + D FP++++KS KV DF G S+ T+ + +NPD E+ +LR W+ D
Sbjct: 128 VGXELLDNADK--FPIIAIKSLKVGDFQGVSLSTLSKSIALVNPDTPESKKLRSWYHDYH 185
Query: 359 GKNAATVSISREIA---AGGAKNEIHKTVSQ---IKNEGLGRSEKPDWVTVRAFITFIKS 412
GK A+ I +I+ GG ++ + VS N LG +KP + ++RA+I+FIK
Sbjct: 186 GKVASMACIGSDISPSSKGGVRSMYYDRVSLSHVTSNPSLGE-DKPSFFSIRAYISFIKP 244
Query: 413 D-SFCYTACPLMIGDRQCNKKVT---QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGL 468
+ + Y AC + CNKKVT +SG + C+ C + DEC RY++ ++ D +G
Sbjct: 245 EQTMWYQAC------KTCNKKVTDAIESG--YWCEGCEKNDDECSXRYIMVVKVSDDSGE 296
Query: 469 TWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDE 528
+ F E E I GC A EL LK + ++ RF + ++ ++ +LFR+ + + Y +E
Sbjct: 297 ACLALFNEQAERIFGCSADELDKLKSQEGEENRFQQKLKEAIWVPHLFRISVAQHEYMNE 356
Query: 529 QRVKITVIRADQVNYSSESRYLLDLISK 556
+R IT V++++ESR LL+ ISK
Sbjct: 357 KRQWITARAVVAVDFAAESRLLLEEISK 384
>gi|157871830|ref|XP_001684464.1| putative replication factor A, 51kDa subunit [Leishmania major
strain Friedlin]
gi|68127533|emb|CAJ05550.1| putative replication factor A, 51kDa subunit [Leishmania major
strain Friedlin]
Length = 467
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 146/447 (32%), Positives = 245/447 (54%), Gaps = 47/447 (10%)
Query: 114 RIIPIAALNPYQG-RWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
+I PI +L P+ G +W I+ARVT K D+R +N GK+FSF L+D + IR T FN
Sbjct: 8 QIQPIDSLTPFLGGKWWIRARVTDKTDIRTWNKPTSQGKLFSFTLID-ESAAIRATVFND 66
Query: 173 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDS--IPK 230
VD F +I G+VY S G +K A + F+++ N++E+ + +S + L ++ + +P
Sbjct: 67 AVDTFEPLIVNGQVYYFSGGQVKNANRRFSNVNNDYELTFDRSSEIMLARQDTSTAALPM 126
Query: 231 QQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKN-GMETQRRILNLKDTSGRSVE 289
Q+++F I ++ E S+VDV+G+V+ V+ I +K+ G E +R + + D + +VE
Sbjct: 127 QRYNFVPIELLKQREVGSLVDVLGVVLKVDEVSSITQKSTGRELMKRNVKMGDMTA-AVE 185
Query: 290 LTLWGD----FCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINP-D 344
+T W D +C G V++++ KV F G ++ + T++ INP D
Sbjct: 186 VTFWNDEAKAWCYPVG------------TVVALRQLKVGSFDGVTLSSTYQTKIDINPTD 233
Query: 345 FAEAHELREWF-DSGGKNAATVSISREIAAGGAKNEI---HKTVSQIKNEGLGRSEKPDW 400
+ +L W+ +GG N ++S AA GA E K + +I++EG+GR KP++
Sbjct: 234 LPDVKKLATWYVATGGANVTSLSSQGLGAASGAGGESDRGRKYLDEIQSEGIGRGLKPEY 293
Query: 401 VTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQ---SGNRWQCDRCNQEIDECDYRYL 457
V VR + K D+ Y ACP CNKKVT+ G+R++C++C++ + RYL
Sbjct: 294 VDVRCVPIYFKQDAQWYDACP------TCNKKVTEEGAQGDRFRCEKCDKTVTPTQ-RYL 346
Query: 458 LQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDD-VRFGEIIRSRVFNQYLF 516
+ Q+ D W+T F E+G E G A E LK Q+D + ++ + R+ +
Sbjct: 347 VSIQVTDNVSQAWLTLFNEAGIEFFGMEAAE---LKRRAQEDPLYIAKLAQGRMNRPVVM 403
Query: 517 RLKIKEE-----LYGDEQ-RVKITVIR 537
RL++KEE + G+E R++++V+R
Sbjct: 404 RLRVKEEMSSNSMTGEESDRLRMSVVR 430
>gi|269860800|ref|XP_002650118.1| replication factor-A protein 1 [Enterocytozoon bieneusi H348]
gi|220066438|gb|EED43919.1| replication factor-A protein 1 [Enterocytozoon bieneusi H348]
Length = 567
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 130/440 (29%), Positives = 238/440 (54%), Gaps = 36/440 (8%)
Query: 117 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDR 176
PI +NP+ W I+ R+ K +L+++NN G+GKVFSF+++D + +I+V CF +
Sbjct: 161 PIKDINPFLINWKIQGRILQKTNLKKFNNKNGEGKVFSFEIMD-ETEQIKVICFGDAAEM 219
Query: 177 FYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFR 236
FY +IE ++Y ++ G +K A K FN ++EI L+ S ++LC + + IP F F+
Sbjct: 220 FYPLIENNQIYSLTHGQIKMANKRFNTNNCDYEIHLDTNSIIELCNDASN-IPMISFKFK 278
Query: 237 HISEIESAENNSIVDVIGIVISVNPSVPILRK-NGMETQRRILNLKDTSGRSVELTLWGD 295
I+E+ S+VD++GI+ + P I+ K + E +R + + D +G +++TLWGD
Sbjct: 279 KINELSLI--TSLVDIVGIIKEIYPIQNIITKSDNREISKRDILVIDETGY-IKVTLWGD 335
Query: 296 FCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWF 355
+E QK V+ +K KV +++G ++G++ S+Q+ +N E +L +W+
Sbjct: 336 KALQEYQK---------DSVICLKGFKVIEYNGINLGSVSSSQVVLNSMLPEVIKLVKWY 386
Query: 356 DSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSF 415
++ GK IS E K +I+ I N E + + IT+IK D+
Sbjct: 387 ETEGK-----EISVE------KTKIYTKRYSIANITESNIE---YGIIHGTITYIKEDNL 432
Query: 416 CYTACPLMIGDRQCNKKVTQSG-NRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAF 474
Y ACP C+KKV Q ++C++CN C+YRY+ I D TG W+ F
Sbjct: 433 YYMACP----TDGCSKKVIQEDLEHYRCEKCNNVFKTCNYRYMTVLGISDFTGQLWINVF 488
Query: 475 QESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKIT 534
+ ++I A++L+ LK E+ D +++++ + ++ ++++ +++Y +E +I
Sbjct: 489 NDVAKQIFNISAEDLHKLK-EIDSD-NATKLVKNIIGKEFAIKVRVVKQIYNEETIKRIN 546
Query: 535 VIRADQVNYSSESRYLLDLI 554
+ D++N E + + +LI
Sbjct: 547 CLELDEINLDQEIKLMTELI 566
>gi|398018224|ref|XP_003862293.1| replication factor A, 51kDa subunit, putative [Leishmania donovani]
gi|322500522|emb|CBZ35599.1| replication factor A, 51kDa subunit, putative [Leishmania donovani]
Length = 467
Score = 212 bits (540), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 146/447 (32%), Positives = 245/447 (54%), Gaps = 47/447 (10%)
Query: 114 RIIPIAALNPY-QGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
+I PI +L P+ G+W I+ARVT K D+R +N GK+FSF L+D + IR T FN
Sbjct: 8 QIQPIDSLTPFLGGKWWIRARVTDKTDIRTWNKPTSQGKLFSFTLID-ESAAIRATVFND 66
Query: 173 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDS--IPK 230
VD F +I G+VY S G +K A + F+++ N++E+ + +S + L ++ + +P
Sbjct: 67 AVDTFEPLIVNGQVYYFSGGQVKNANRRFSNVNNDYELTFDRSSEIMLARQDTSTAALPM 126
Query: 231 QQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKN-GMETQRRILNLKDTSGRSVE 289
Q+++F I ++ E S+VDV+G+V+ V+ I +K+ G E +R + + D + +VE
Sbjct: 127 QRYNFVPIELLKQREVGSLVDVLGVVLKVDEVSSITQKSTGRELVKRNVKMGDMTA-AVE 185
Query: 290 LTLWGD----FCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINP-D 344
+T W D +C G V++++ KV F G ++ + T++ INP D
Sbjct: 186 VTFWNDEAKAWCYPVG------------TVVALRQLKVGSFDGVTLSSTYQTKIDINPTD 233
Query: 345 FAEAHELREWF-DSGGKNAATVSISREIAAGGAKNEI---HKTVSQIKNEGLGRSEKPDW 400
+ +L W+ +GG N ++S AA GA E K + +I++EG+GR KP++
Sbjct: 234 LPDVKKLAAWYVTTGGANVTSLSSQGLGAASGAGGESDRGRKYLDEIQSEGIGRGLKPEY 293
Query: 401 VTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQ---SGNRWQCDRCNQEIDECDYRYL 457
V VR + K D+ Y ACP CNKKVT+ G+R++C++C++ + RYL
Sbjct: 294 VDVRCVPIYFKQDAQWYDACP------TCNKKVTEEGAQGDRFRCEKCDKTVTPTQ-RYL 346
Query: 458 LQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDD-VRFGEIIRSRVFNQYLF 516
+ Q+ D W+T F E+G E G A E LK Q+D + ++ + R+ +
Sbjct: 347 VSIQVTDNVSQAWLTLFNEAGIEFFGMEAAE---LKRRAQEDPLYIAKLAQGRMNRPVVM 403
Query: 517 RLKIKEE-----LYGDEQ-RVKITVIR 537
RL++KEE + G+E R++++V+R
Sbjct: 404 RLRVKEETSSNAMTGEESDRLRMSVVR 430
>gi|146092153|ref|XP_001470220.1| putative replication factor A, 51kDa subunit [Leishmania infantum
JPCM5]
gi|134085014|emb|CAM69415.1| putative replication factor A, 51kDa subunit [Leishmania infantum
JPCM5]
Length = 467
Score = 212 bits (540), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 146/447 (32%), Positives = 245/447 (54%), Gaps = 47/447 (10%)
Query: 114 RIIPIAALNPY-QGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
+I PI +L P+ G+W I+ARVT K D+R +N GK+FSF L+D + IR T FN
Sbjct: 8 QIQPIDSLTPFLGGKWWIRARVTDKTDIRTWNKPTSQGKLFSFTLID-ESAAIRATVFND 66
Query: 173 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDS--IPK 230
VD F +I G+VY S G +K A + F+++ N++E+ + +S + L ++ + +P
Sbjct: 67 AVDTFEPLIVNGQVYYFSGGQVKNANRRFSNVNNDYELTFDRSSEIMLARQDTSTAALPM 126
Query: 231 QQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKN-GMETQRRILNLKDTSGRSVE 289
Q+++F I ++ E S+VDV+G+V+ V+ I +K+ G E +R + + D + +VE
Sbjct: 127 QRYNFVPIELLKQREVGSLVDVLGVVLKVDEVSSITQKSTGRELVKRNVKMGDMTA-AVE 185
Query: 290 LTLWGD----FCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINP-D 344
+T W D +C G V++++ KV F G ++ + T++ INP D
Sbjct: 186 VTFWNDEAKAWCYPVG------------TVVALRQLKVGSFDGVTLSSTYQTKIDINPTD 233
Query: 345 FAEAHELREWF-DSGGKNAATVSISREIAAGGAKNEI---HKTVSQIKNEGLGRSEKPDW 400
+ +L W+ +GG N ++S AA GA E K + +I++EG+GR KP++
Sbjct: 234 LPDVKKLATWYVTTGGANVTSLSSQGLGAASGAGGESDRGRKYLDEIQSEGIGRGLKPEY 293
Query: 401 VTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQ---SGNRWQCDRCNQEIDECDYRYL 457
V VR + K D+ Y ACP CNKKVT+ G+R++C++C++ + RYL
Sbjct: 294 VDVRCVPIYFKQDAQWYDACP------TCNKKVTEEGAQGDRFRCEKCDKTVTPTQ-RYL 346
Query: 458 LQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDD-VRFGEIIRSRVFNQYLF 516
+ Q+ D W+T F E+G E G A E LK Q+D + ++ + R+ +
Sbjct: 347 VSIQVTDNVSQAWLTLFNEAGIEFFGMEAAE---LKRRAQEDPLYIAKLAQGRMNRPVVM 403
Query: 517 RLKIKEE-----LYGDEQ-RVKITVIR 537
RL++KEE + G+E R++++V+R
Sbjct: 404 RLRVKEETSSNAMTGEESDRLRMSVVR 430
>gi|449532803|ref|XP_004173368.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like,
partial [Cucumis sativus]
Length = 374
Score = 212 bits (540), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 121/231 (52%), Positives = 151/231 (65%), Gaps = 30/231 (12%)
Query: 20 SELTAQKTIPSNNLPQPVRVNNYSAPNSGTF-NLQNSGTFNSQ-NPGSFSTPNSGT-FRA 76
S + + + S + QP +VN P+ G++ N +G F++ P S+S +SG+ F
Sbjct: 147 SGMIGKGNVSSASFEQP-KVNQSHVPHMGSYSNPPETGRFSASIAPPSYSKTDSGSRFNG 205
Query: 77 P---------------NAGSIVRSFQPTV--------QPPYQPPPN-FRNHGPILKNEAP 112
P N+GS + +P + QP YQ PP+ + N GPI KNEA
Sbjct: 206 PSPLTGSYGDQKMAYHNSGSDIP--RPPLNSNAYARPQPIYQQPPSMYSNRGPIAKNEAA 263
Query: 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
RI+PI+ALNPYQGRW IKARVT+KG+LR YNN RGDGKVFSFDLLD+ GEIRVTCFN
Sbjct: 264 PRIMPISALNPYQGRWTIKARVTSKGELRHYNNPRGDGKVFSFDLLDAYRGEIRVTCFNT 323
Query: 173 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTE 223
V D+FY IE G+VY ISKGSLKPAQKNFNHLKN++EIFLE TST+ C E
Sbjct: 324 VADQFYNQIESGKVYFISKGSLKPAQKNFNHLKNDYEIFLENTSTIQPCFE 374
>gi|344230770|gb|EGV62655.1| hypothetical protein CANTEDRAFT_115222 [Candida tenuis ATCC 10573]
Length = 376
Score = 211 bits (538), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 116/383 (30%), Positives = 210/383 (54%), Gaps = 22/383 (5%)
Query: 177 FYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFR 236
YE ++ G+VY ISK ++ A+ F+ L + +E+ L+ + V+ C + ++PK +F+F
Sbjct: 1 MYETLQEGKVYYISKARIQAAKPQFSRLSHPYELSLDRDTIVEECFSNNGNVPKLKFNFT 60
Query: 237 HISEIESAENNSIVDVIGIVISVNPSVPILRKN-GMETQRRILNLKDTSGRSVELTLWG- 294
+++I+SAE N+++DV+G++ V P+ I K+ G RR +++ D S S+ + LW
Sbjct: 61 KLNQIQSAEPNTVIDVVGVLREVKPAFQITSKSTGKPFDRRDIDIVDDSNFSITVGLWNA 120
Query: 295 ---DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHEL 351
DF EG V++ K K+ DF G+S+ + + NPD EA++L
Sbjct: 121 TAIDFNLSEG------------TVIAFKGCKIQDFGGRSLTLTQTGSILPNPDAPEAYQL 168
Query: 352 REWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIK 411
+ W+D+ G N ++ + A + KT++Q+K E LG E+PD+ +V+A I F K
Sbjct: 169 KGWYDNQGSNETFQTLKADNAGSANYIKNRKTIAQVKEENLGAQEQPDFFSVKATINFFK 228
Query: 412 SDSFCYTAC--PLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQTGL 468
+++FCY AC + CN+K+ G+ W+C++C+ E YRY+L I D T
Sbjct: 229 TETFCYPACVNKQEASNNLCNRKIIDQGDGTWRCEKCDINYSEATYRYILNCSIMDATEQ 288
Query: 469 TWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDE 528
W T F + +I G A EL +LK ++ F +++ + ++ FRLK +++ Y E
Sbjct: 289 LWATLFDQEASKIFGVSANELLVLKE--SNEAEFKKVVEAVTMKEFSFRLKARQDSYNGE 346
Query: 529 QRVKITVIRADQVNYSSESRYLL 551
R++ + +++++E +L+
Sbjct: 347 SRIRYQTMAVYDIDFAAECDFLV 369
>gi|401425076|ref|XP_003877023.1| putative replication factor A, 51kDa subunit [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322493267|emb|CBZ28552.1| putative replication factor A, 51kDa subunit [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 467
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 145/447 (32%), Positives = 245/447 (54%), Gaps = 47/447 (10%)
Query: 114 RIIPIAALNPY-QGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
+I PI +L P+ G+W I+ARVT K D+R +N GK+FSF L+D + IR T FN
Sbjct: 8 QIQPIDSLTPFLGGKWWIRARVTDKTDVRTWNKPTSQGKLFSFTLID-ESAAIRATVFND 66
Query: 173 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDS--IPK 230
VD F +I G+VY S G +K A + F+++ N++E+ + +S + L ++ + +P
Sbjct: 67 AVDTFEPLIVNGQVYYFSGGQVKNANRRFSNVNNDYELTFDRSSEIMLARQDTSTAALPM 126
Query: 231 QQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKN-GMETQRRILNLKDTSGRSVE 289
Q+++F I ++ E S+VDV+G+V+ V+ I +K+ G E +R + + D + +VE
Sbjct: 127 QRYNFVPIELLKQREVGSLVDVLGVVLKVDEVSSITQKSTGRELVKRNVKMGDMTA-AVE 185
Query: 290 LTLWGD----FCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINP-D 344
+T W D +C G V++++ KV F G ++ + T++ INP D
Sbjct: 186 VTFWNDEAKAWCYPVG------------TVVALRQLKVGSFDGVTLSSTYQTKIDINPTD 233
Query: 345 FAEAHELREWF-DSGGKNAATVSISREIAAGGAKNEI---HKTVSQIKNEGLGRSEKPDW 400
+ +L W+ +GG N ++S AA GA E K + +I+++G+GR KP++
Sbjct: 234 LPDVKKLATWYVTTGGANVMSLSSQGLGAASGAGGESDRGRKYLDEIQSDGIGRGLKPEY 293
Query: 401 VTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQ---SGNRWQCDRCNQEIDECDYRYL 457
V VR + K D+ Y ACP CNKKVT+ G+R++C++C++ + RYL
Sbjct: 294 VDVRCVPIYFKQDAQWYDACP------TCNKKVTEEGAQGDRFRCEKCDKTVTPTQ-RYL 346
Query: 458 LQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDD-VRFGEIIRSRVFNQYLF 516
+ Q+ D W+T F E+G E G A E LK Q+D + ++ + R+ +
Sbjct: 347 VSIQVTDNVSQAWLTLFNEAGIEFFGMEAAE---LKRRAQEDPLYIAKLAQGRMNRPVVM 403
Query: 517 RLKIKEE-----LYGDEQ-RVKITVIR 537
RL++KEE + G+E R++++V+R
Sbjct: 404 RLRVKEETSSNAMTGEESDRLRMSVVR 430
>gi|384246518|gb|EIE20008.1| hypothetical protein COCSUDRAFT_19010 [Coccomyxa subellipsoidea
C-169]
Length = 476
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 130/453 (28%), Positives = 234/453 (51%), Gaps = 27/453 (5%)
Query: 117 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDR 176
PI ALNPY W I+A++ +K LR ++ A VF +++D G I +T + + ++
Sbjct: 34 PIHALNPYSNDWTIRAKLVSKAPLRHFDKAGQQQAVFGVEVVDDQGTTIEITLWRGLAEK 93
Query: 177 FYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFR 236
FY+ +E GRVY+ +G +K A KN+ ++N++ I ++ S ++ C + D S + F
Sbjct: 94 FYDHLEEGRVYIFRRGQVKLANKNYKTVRNDYTIHMDNGSEIEQCEDSDVSKMTAKLKFV 153
Query: 237 HISEIES-AENNSIVDVIGIVISVNPSVPILR-KNGMETQRRILNLKDTSGRSVELTLWG 294
+ A ++VDV+GI +V P + R ++G E RR + L D ++V +TLWG
Sbjct: 154 DFERLPMYAGKKTLVDVLGIATAVGPLGSVKRSRDGTELARRDVTLVDQGAKTVVVTLWG 213
Query: 295 DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREW 354
+ G +L++ D ++S+ S +V DF+G S+ T+ + + + P+ A LR W
Sbjct: 214 STAEEVGAQLEQQPDA----LISISSCRVTDFNGVSLSTVTRSGVSVEPEGERADALRRW 269
Query: 355 FDSGGKNAATVSISREIA----AGGAKNEIHKTVSQIKNEGLGRSE------KPDWVTVR 404
++S G+ A T + +A A G E+ +T +Q++ +G+ E KP + TV
Sbjct: 270 WESDGRTAPTQHLGEGLASAKRASGGAAEL-QTFAQLR---VGKEELPPADAKPQYHTVI 325
Query: 405 AFITFIKS-DSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQ 463
A + I S S Y ACP N+KV + G W C+ Q RY++ A
Sbjct: 326 ATVANIDSQQSLYYEACP------DNNRKVVKQGEGWFCEYDQQTYMAMVRRYVMLANCV 379
Query: 464 DQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEE 523
D +G ++ F E E +LG A E+ LK + + + +++ +++++ R++ + +
Sbjct: 380 DASGDCLLSVFNEQAEALLGISADEIATLKEDETNPGPYEAVLKRAQWSEWVLRVQSRTQ 439
Query: 524 LYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
Y E R +++V V+Y ESR ++ + +
Sbjct: 440 EYNGELRQRLSVASLKPVSYVEESRRMVQALDR 472
>gi|240274193|gb|EER37711.1| replication factor A 1 [Ajellomyces capsulatus H143]
Length = 541
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 146/444 (32%), Positives = 219/444 (49%), Gaps = 80/444 (18%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
I PI AL+PY +W IKAR T K ++ ++N G+GK+FS +LLD D GEIR T F
Sbjct: 168 IYPIEALSPYSHKWTIKARCTNKSAIKTWHNKNGEGKLFSVNLLD-DSGEIRATAFKDQC 226
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
D Y + E EA +T+D
Sbjct: 227 DSLYGVFEE-----------------------------EAGTTID--------------- 242
Query: 235 FRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGME-TQRRILNLKDTSGRSVELTLW 293
VIG++ V IL K + +R L L D +G SV LT+W
Sbjct: 243 -----------------VIGVLKDVGELSQILSKTTSKPYDKRDLTLVDNTGYSVRLTVW 285
Query: 294 GDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELRE 353
G+ KE + E V++ K KV+DF+G+S+ + S + ++PD +AH+L+
Sbjct: 286 GNIA-KEFDSVPE-------SVVAFKGVKVSDFNGRSLSLLSSGSMTVDPDIEDAHKLKG 337
Query: 354 WFDSGGKNAATVSI-SREIAAG-GAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIK 411
W+D+ G++ S S AAG G + KT+ Q+ LG SEKPD+ +V+A + ++K
Sbjct: 338 WYDAQGRSETFASHDSMNNAAGFGDRASSFKTIVQVHEGNLGMSEKPDYFSVKATVVYVK 397
Query: 412 SDSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQTGLTW 470
D+ Y AC + D+ CNKKV Q N +W+C+RC+Q +YRY+L + D TG W
Sbjct: 398 QDTMAYPAC---LTDK-CNKKVLQDENGQWRCERCDQSFPHPEYRYILSVNVCDHTGALW 453
Query: 471 VTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQR 530
++ F E G+ ILG A EL LK D+ + E+++ + F + K + + D+QR
Sbjct: 454 LSCFDEVGKIILGTSANELMELKE--NDERAYEELVQRANCRAWNFNCRAKMDNFQDQQR 511
Query: 531 VKITVIRADQVNYSSESRYLLDLI 554
V+ V ++YS ES L +LI
Sbjct: 512 VRYQVSSVSAIDYSVESARLAELI 535
>gi|294949396|ref|XP_002786176.1| Replication protein A 70 kDa DNA-binding subunit, putative
[Perkinsus marinus ATCC 50983]
gi|239900333|gb|EER17972.1| Replication protein A 70 kDa DNA-binding subunit, putative
[Perkinsus marinus ATCC 50983]
Length = 479
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 145/463 (31%), Positives = 246/463 (53%), Gaps = 37/463 (7%)
Query: 117 PIAALNPYQGR-WAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVD 175
PI ++ Y R W IKARVTAK +R + NARG G VFS DLLD +G EIR + FNA +
Sbjct: 6 PIREISSYSVRNWTIKARVTAKSPVRHFTNARGGGSVFSVDLLDKEGSEIRGSFFNAAAE 65
Query: 176 RFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEI-FLEATSTVDLCTEEDDSIPKQQFS 234
+F ++++ G+VY SKG++K A K ++ + +EI F E + V++ + DD I K ++S
Sbjct: 66 KFDKLLQKGKVYTFSKGNVKVANKRYSSCNHNYEIVFEEDSQIVEVQDDVDDHIDKIKYS 125
Query: 235 FRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWG 294
F + E++S S VD++ ++ P+ + KNG E RR L + D SG V++T W
Sbjct: 126 FCPVRELKSKSVPSTVDLLVVIKDHRPAGTVNSKNGAELFRRNLTVCDESGCCVDVTFWN 185
Query: 295 DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREW 354
D N + + + PV+++K V D+ G+S T+ STQ+ +NPD EA +L+ W
Sbjct: 186 DLVNVVDESVLQTQ-----PVVAMKGVSVRDYGGRSCSTLNSTQIEVNPDIPEAKQLKIW 240
Query: 355 FDSGGKNAATVSISRE---IAAGGAKNEIHK--TVSQIKNE----GLGRSEKPDWVTVR- 404
+ + G + A ++S++ + G + + K T++++KN+ LG S + R
Sbjct: 241 WANTGCSMAFTNLSQQGTSVPGSGGQTMVTKEMTIAEMKNDVKNMDLGGSMHSYEIIGRL 300
Query: 405 AFITFIKSDS----FCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQA 460
F+T D Y AC CN+K+ + + + C CN++++ RY+L++
Sbjct: 301 QFVTTRGRDGNDIPIFYMAC------ESCNRKMAEGSDGF-CQACNRQVN-VKARYMLRS 352
Query: 461 QIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDV--RFGEIIRSRVFN-QYLFR 517
Q D T ++T F + ++G P ++ M + DV G ++ ++ ++ R
Sbjct: 353 QFVDSTDDAYLTCFHDQAHTLIGRPVEDFVMAQ-----DVGKSAGNELKEHYYDKEWKIR 407
Query: 518 LKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKSFRK 560
++ K E Y E R +ITV + ++ R LL I ++ K
Sbjct: 408 VRAKMETYQGEPRPRITVSSLEPMDPKEHCRRLLAAIHENIGK 450
>gi|13096131|pdb|1FGU|A Chain A, Ssdna-Binding Domain Of The Large Subunit Of Replication
Protein A
gi|13096132|pdb|1FGU|B Chain B, Ssdna-Binding Domain Of The Large Subunit Of Replication
Protein A
Length = 252
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 109/257 (42%), Positives = 163/257 (63%), Gaps = 11/257 (4%)
Query: 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
++++PIA+L PYQ +W I ARVT K +R ++N+RG+GK+FS +L+D + GEIR T FN
Sbjct: 2 SKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVD-ESGEIRATAFNE 60
Query: 173 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQ 232
VD+F+ +IEV +VY SKG+LK A K F +KN++E+ ++V C E+D +P Q
Sbjct: 61 QVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPC-EDDHHLPTVQ 119
Query: 233 FSFRHISEIESAENNSIVDVIGIVISVNPSVPI-LRKNGMETQRRILNLKDTSGRSVELT 291
F F I ++E+ +S+VD+IGI S + I +R N E +R + L DTSG+ V T
Sbjct: 120 FDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTAT 179
Query: 292 LWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHEL 351
LWG+ +K Q PVL++K +V+DF G+S+ + S+ + NPD EA++L
Sbjct: 180 LWGEDADKFDGSRQ--------PVLAIKGARVSDFGGRSLSVLSSSTIIANPDIPEAYKL 231
Query: 352 REWFDSGGKNAATVSIS 368
R WFD+ G+ VSIS
Sbjct: 232 RGWFDAEGQALDGVSIS 248
>gi|429963164|gb|ELA42708.1| replication factor-a protein 1 (rpa1) [Vittaforma corneae ATCC
50505]
Length = 588
Score = 209 bits (533), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 130/452 (28%), Positives = 237/452 (52%), Gaps = 37/452 (8%)
Query: 107 LKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIR 166
K A I I + P++ + K RV +K +++++ +GDG+VFSF++ D G +I+
Sbjct: 169 FKEAANEDITDIKKIFPHKKTFKFKGRVVSKTEIKKFTTQKGDGQVFSFEIADCTG-QIK 227
Query: 167 VTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDD 226
F+ VD FY ++E + Y+IS ++KP+ K F++ +++EI LE + + EDD
Sbjct: 228 CVAFSECVDTFYPLVENNKAYVISNVTVKPSNKKFSNNTSDFEIHLEKNTIITKV--EDD 285
Query: 227 SIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPI-LRKNGMETQRRILNLKDTSG 285
+IPK F F I+++ S +VD + ++ P I ++ G E+ +R L + D +G
Sbjct: 286 NIPKYMFKFVKIADLASV--GGVVDCLAVIKEAYPVGKITIKSTGRESAKRDLMIIDQTG 343
Query: 286 RSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDF 345
S LTLWG +E +K ++ + S KV D++G ++ T+ ++Q+ N +
Sbjct: 344 -SCRLTLWGPKAEEEYEKDN---------IICLGSVKVGDYNGINLTTVSNSQVIQNIEL 393
Query: 346 AEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRA 405
EA EL W++ G+N + + I +S++K+ L ++ T++
Sbjct: 394 PEAIELLAWYEEKGRNIV-IEKPKRIPK-------RSFISEVKDNSL------EYATIQG 439
Query: 406 FITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNR-WQCDRCNQEIDECDYRYLLQAQIQD 464
+ ++K + Y ACP CNKKV N ++C++CN ++C+YRY++ + D
Sbjct: 440 SVVYLKEEGLFYEACP----SETCNKKVLMEDNGIFRCEKCNYTFEKCNYRYMINIHVGD 495
Query: 465 QTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEEL 524
TG W+T F E G+ +LG A EL + ++V +I+ + FRL+ KEE
Sbjct: 496 FTGQMWITIFDEGGKSLLGVTAAELKEMGECNPENVH--NLIKGIYSKELQFRLRNKEEN 553
Query: 525 YGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
Y + +++ + + V+Y E++ +L+ I K
Sbjct: 554 YNGDIKLRSSCLEISPVDYVFETKRMLEAIEK 585
>gi|15148880|gb|AAK84867.1|AF399823_1 replication protein A subunit 1 [Leishmania infantum]
Length = 467
Score = 209 bits (532), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 145/447 (32%), Positives = 244/447 (54%), Gaps = 47/447 (10%)
Query: 114 RIIPIAALNPY-QGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
+I PI +L P+ G+W I+ARVT K D+R +N GK+FSF L+D + I FN
Sbjct: 8 QIQPIDSLTPFLGGKWWIRARVTDKTDIRTWNKPTSQGKLFSFTLID-ESAAIGANVFND 66
Query: 173 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDS--IPK 230
VD F +I G+VY S G +K A + F+++ N++E+ + +S + L ++ + +P
Sbjct: 67 AVDTFEPLIVNGQVYYFSGGQVKNANRRFSNVNNDYELTFDRSSEIMLARQDTSTAALPM 126
Query: 231 QQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKN-GMETQRRILNLKDTSGRSVE 289
Q+++F I ++ E S+VDV+G+V+ V+ I +K+ G E +R + + D + +VE
Sbjct: 127 QRYNFVPIELLKQREVGSLVDVLGVVLKVDEVSSITQKSKGRELVKRNVKMGDMTA-AVE 185
Query: 290 LTLWGD----FCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINP-D 344
+T W D +C G V++++ KV F G ++ + T++ INP D
Sbjct: 186 VTFWNDEAKAWCYPVG------------TVVALRQLKVGSFDGVTLSSTYKTKIDINPTD 233
Query: 345 FAEAHELREWF-DSGGKNAATVSISREIAAGGAKNEI---HKTVSQIKNEGLGRSEKPDW 400
A+ +L W+ +GG N ++S AA GA E K + +I++EG+GR KP++
Sbjct: 234 LADVKKLATWYVTTGGANVTSLSSQGLGAASGAGGESDRGRKYLDEIQSEGIGRGLKPEY 293
Query: 401 VTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQ---SGNRWQCDRCNQEIDECDYRYL 457
V VR + K D+ Y ACP CNKKVT+ G+R++C++C++ + RYL
Sbjct: 294 VDVRCVPIYFKQDAQWYDACP------TCNKKVTEEGAQGDRFRCEKCDKTVTPTQ-RYL 346
Query: 458 LQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDD-VRFGEIIRSRVFNQYLF 516
+ Q+ D W+T F E+G E G A E LK Q+D + ++ + R+ +
Sbjct: 347 VSIQVTDNVSQAWLTLFNEAGIEFFGMEAAE---LKRRAQEDPLYIAKLAQGRMNRPVVM 403
Query: 517 RLKIKEE-----LYGDEQ-RVKITVIR 537
RL++KEE + G+E R++++V+R
Sbjct: 404 RLRVKEETSSNAMTGEESDRLRMSVVR 430
>gi|2833320|sp|Q23696.1|RFA1_CRIFA RecName: Full=Replication factor A 51 kDa subunit; AltName:
Full=RP-A p51; AltName: Full=Replication factor-A
protein 1; Short=RF-A protein 1; AltName:
Full=Single-stranded DNA-binding protein P51 subunit
gi|413772|emb|CAA80682.1| replication protein A 51 kilodalton subunit [Crithidia fasciculata]
Length = 467
Score = 209 bits (531), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 142/442 (32%), Positives = 240/442 (54%), Gaps = 37/442 (8%)
Query: 114 RIIPIAALNPYQG-RWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
+I PI +L P+ G +W I+ARV K D+R +N GK+FSF L+D + IR T FN
Sbjct: 8 QIQPIDSLTPFLGGKWWIRARVADKSDIRTWNKPTSQGKLFSFTLID-ESAAIRATVFND 66
Query: 173 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDD--SIPK 230
VD F ++ G+VY S G +K A + F+++ N++E+ + S V L ++ ++P
Sbjct: 67 AVDTFEPLVVNGQVYYFSGGQVKNANRRFSNVNNDYELTFDRASEVILARQDSSAAALPM 126
Query: 231 QQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKN-GMETQRRILNLKDTSGRSVE 289
Q+++F I ++ E S+VDV+G+V+ V+ I +K+ G E +R + + D S +VE
Sbjct: 127 QRYNFVPIELLKQREVGSLVDVLGVVLKVDEISSITQKSTGRELIKRNVKIGDMSA-AVE 185
Query: 290 LTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINP-DFAEA 348
+T W D E + V V++++ KV F G ++ + T++ +NP D +
Sbjct: 186 VTFWND----EAKAWNYPVGT----VVALRQLKVGSFDGVTLSSTYQTKIDVNPADLPDV 237
Query: 349 HELREWF-DSGGKNAATVS---ISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVR 404
+L W+ +GG N ++S + GG N K + +I++EG+GR KP++V VR
Sbjct: 238 KKLATWYVSTGGANVVSLSSQGLGAGGGGGGEGNRGRKYLDEIQSEGIGRGAKPEYVDVR 297
Query: 405 AFITFIKSDSFCYTACPLMIGDRQCNKKVTQ---SGNRWQCDRCNQEIDECDYRYLLQAQ 461
+ K D+ Y ACP CNKKVT+ G+R++C++C+ + RYL+ Q
Sbjct: 298 CVPIYFKQDAQWYDACP------TCNKKVTEEGAQGDRFRCEKCDATVVPTQ-RYLVSIQ 350
Query: 462 IQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIK 521
+ D W+T F E+G E G A EL E D + ++ ++R+ + RL++K
Sbjct: 351 VTDNVSQVWLTLFNEAGVEFFGMEASELKRRAQE--DPLYIAKLAQARMNRPVVMRLRVK 408
Query: 522 EE-----LYGDEQ-RVKITVIR 537
EE + G+E R++++V+R
Sbjct: 409 EETNANAMTGEESDRLRMSVVR 430
>gi|40317150|gb|AAR84278.1| putative replication protein A subunit 1 [Leishmania amazonensis]
Length = 467
Score = 208 bits (530), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 145/447 (32%), Positives = 243/447 (54%), Gaps = 47/447 (10%)
Query: 114 RIIPIAALNPY-QGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
+I PI +L P+ G+W I+ARVT K D+R +N GK+FSF L+D + IR T FN
Sbjct: 8 QIQPIDSLTPFLGGKWWIRARVTDKTDVRTWNKPTSQGKLFSFTLID-ESAAIRATVFND 66
Query: 173 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDS--IPK 230
VD F +I G+VY S G +K A + F+++ N++E+ + +S + L ++ + +P
Sbjct: 67 AVDTFEPLIVNGQVYYFSGGQVKNANRRFSNVNNDYELTFDRSSEIMLARQDTSTAALPM 126
Query: 231 QQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKN-GMETQRRILNLKDTSGRSVE 289
Q+++F I ++ E S+VDV+G+V+ V+ I +K+ G E +R + + D + +VE
Sbjct: 127 QRYNFVPIELLKQREVGSLVDVLGVVLKVDEVSSITQKSTGRELVKRNVKMGDMTA-AVE 185
Query: 290 LTLWGD----FCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINP-D 344
+T W D +C G V++++ KV F G + T++ INP D
Sbjct: 186 VTFWNDEAKAWCYPVG------------TVVALRQLKVGSFHGVPFSSTYQTKIDINPTD 233
Query: 345 FAEAHELREWF-DSGGKNAATVSISREIAAGGAKNEI---HKTVSQIKNEGLGRSEKPDW 400
+ +L W+ +GG N ++S AA GA E K + +I+++G+GR KP++
Sbjct: 234 LPDVKKLATWYVTTGGANVMSLSSQGLGAASGAGGESDRGRKYLDEIQSDGIGRGLKPEY 293
Query: 401 VTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQ---SGNRWQCDRCNQEIDECDYRYL 457
V VR + K D+ Y ACP CNKKVT+ G+R++C++C++ + RYL
Sbjct: 294 VDVRCVPIYFKQDAQWYDACP------TCNKKVTEEGAQGDRFRCEKCDKTVTPTQ-RYL 346
Query: 458 LQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDD-VRFGEIIRSRVFNQYLF 516
+ Q+ D W+T F E+G E G A E LK Q+D + ++ + R+ +
Sbjct: 347 VSIQVTDNVSQAWLTLFNEAGIEFFGMEAAE---LKRRAQEDPLYIAKLAQGRMNRPVVM 403
Query: 517 RLKIKEE-----LYGDEQ-RVKITVIR 537
RL++KEE + G+E R++++V+R
Sbjct: 404 RLRVKEETSSNAMTGEESDRLRMSVVR 430
>gi|209879421|ref|XP_002141151.1| replication factor-A protein 1 [Cryptosporidium muris RN66]
gi|209556757|gb|EEA06802.1| replication factor-A protein 1, putative [Cryptosporidium muris
RN66]
Length = 870
Score = 207 bits (528), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 146/503 (29%), Positives = 247/503 (49%), Gaps = 65/503 (12%)
Query: 69 PNSGTFRAPNAGSIVRSFQPTVQPPYQPPPNFRNHGPILKNEAPARIIPIAALNPYQGRW 128
P SG A N G I RS PY GPI +N+ + PI ++ Y RW
Sbjct: 343 PGSG---AVNMGHIQRS------GPYSSGSR---GGPISRNQ-DIPVYPIKSITSYLHRW 389
Query: 129 AIKARVTAKGDLRRYNNARG-DGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVY 187
I RV +K D+R +++++ +GKVFSF++ D++G +IR TCF VD+FYE ++ G +Y
Sbjct: 390 RIIGRVISKSDVRTFSSSKSKEGKVFSFEICDAEGSQIRATCFTKAVDKFYEFLKEGEIY 449
Query: 188 LISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENN 247
SKG +K A FN + +EI + + ED IPK+ ++F I++I +
Sbjct: 450 SFSKGDVKEANAKFNKTGHGFEIIFNEDADIQ-SMPEDSRIPKKAYNFVSIADIRNYSKG 508
Query: 248 SIVDVIGIVISVNPSVPI-LRKNGMETQRRILNLKDTSGRSVELTLWGDFCN-KEGQKLQ 305
+D++GI+ +P + I ++ G +TQ+R L + D SG S++LTLW + N EG Q
Sbjct: 509 QSIDILGILWKASPIMTITIKSTGADTQKRELTILDRSGYSIDLTLWSERTNLDEGMLAQ 568
Query: 306 EMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINP-DFAEAHELREWFDSGGKNAAT 364
P+++VK+ + +F+G + P+T + NP + +A ELR+WF +
Sbjct: 569 N-------PMIAVKNAIIEEFNGFKLKFGPNTSIEWNPINIEQADELRQWFQESNNQNSI 621
Query: 365 VSISREIAA--GGAKNEIHKTVSQI---KNEGLGRSEKPD---WVTVRAFITFIKSDSFC 416
VS+S N +++ +I G+ S+ D WV A I I+ + +
Sbjct: 622 VSLSANSTGNINSVTNSQRQSIEEIIATATSGVNSSDILDGGIWVFTNATIRTIRDNKYF 681
Query: 417 YTACPLMIGDRQCNKKVTQ-----------------------SGNRWQCDRCNQEIDECD 453
+++C RQC +KVT+ +G + C C Q I++
Sbjct: 682 WSSC------RQCKRKVTEIEDPNSVSALILPFSSENGNKVNTGPNYHCPNCQQTIEDPL 735
Query: 454 YRYLLQAQIQDQTGLTWVTAFQESGEEIL-GCPAKELYMLKYELQDDVRFGEIIRSRVFN 512
+Y+L ++ D TG AF E GE I+ G +L ++ + +I + F+
Sbjct: 736 KKYILSCELIDSTGTLRAVAFAEHGESIMDGLNVDQLESMRNNPEKSTE--DIFADKNFS 793
Query: 513 QYLFRLKIKEELYGDEQRVKITV 535
+++F+L ++E+Y D +K +
Sbjct: 794 EWVFKLNGRKEVYQDSTILKYRI 816
>gi|402471519|gb|EJW05236.1| replication factor-a protein 1 (rpa1) [Edhazardia aedis USNM 41457]
Length = 759
Score = 207 bits (528), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 142/470 (30%), Positives = 239/470 (50%), Gaps = 57/470 (12%)
Query: 99 NFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL 158
NF+ + +N+ PIA++NP+Q +W+IK R T K D++++ NARG+GK+F+ ++
Sbjct: 337 NFQKNNLTEENKKHVENTPIASINPFQNKWSIKGRCTYKSDIKKFTNARGEGKLFTVNIS 396
Query: 159 DSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTV 218
D + G I+++ F+ VD F+ I E G+ ++I+KG +K A K ++ +++EI+L+ S V
Sbjct: 397 D-ETGTIKISAFSECVDMFFTIFENGKSFIITKGQVKMANKKYSTGTSDYEIYLDKNSEV 455
Query: 219 DLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPI-LRKNGMETQRRI 277
D+ P+ F+F I+++ + + + DVIG+V P+ I LR G E ++R
Sbjct: 456 TPIF--DEGAPRYFFNFVKINDLNISLHQA--DVIGVVKEAYPTSTITLRNTGKEQKKRD 511
Query: 278 LNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPST 337
+ D +G ++ LTLWG G L ++VG V++ + +++G + I T
Sbjct: 512 FVIIDETG-NIRLTLWG-----SGADLP--LEVG--DVIACNCLSIREYNGIVLSQISPT 561
Query: 338 QLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQ--------IKN 389
Q+ INPD E L+ W+++ GKN ++HK S+ I+N
Sbjct: 562 QVHINPDLEECFLLKGWYENEGKNI----------------KVHKKASEQRYLISDIIEN 605
Query: 390 EGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSG-NRWQCDRCNQE 448
E W + + I +S Y AC +C KKV G + ++C++CN+
Sbjct: 606 E-------MKWGSFIGTVLQINENSLYYQACI------ECKKKVIDEGEDVYRCEKCNKT 652
Query: 449 IDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRS 508
D+C +Y + QI D T F G+ G AK L L Q + II++
Sbjct: 653 FDQCIPKYTINLQIADFTSSIRAMVFDAQGDIFFGISAKHLVDLG---QKSSQIDLIIKN 709
Query: 509 RVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKSF 558
++F+ +++E Y E R K V ++ NY SES+ LLD I KS
Sbjct: 710 SYLRDFIFKTSMRQESYQGETRNKYNVSSLEECNYISESKILLDEIRKSL 759
>gi|2624702|pdb|1JMC|A Chain A, Single Stranded Dna-Binding Domain Of Human Replication
Protein A Bound To Single Stranded Dna, Rpa70 Subunit,
Residues 183-420
Length = 246
Score = 206 bits (524), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 105/249 (42%), Positives = 159/249 (63%), Gaps = 11/249 (4%)
Query: 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
++++PIA+L PYQ +W I ARVT K +R ++N+RG+GK+FS +L+D + GEIR T FN
Sbjct: 6 SKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVD-ESGEIRATAFNE 64
Query: 173 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQ 232
VD+F+ +IEV +VY SKG+LK A K F +KN++E+ ++V C E+D +P Q
Sbjct: 65 QVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPC-EDDHHLPTVQ 123
Query: 233 FSFRHISEIESAENNSIVDVIGIVISVNPSVPI-LRKNGMETQRRILNLKDTSGRSVELT 291
F F I ++E+ +S+VD+IGI S + I +R N E +R + L DTSG+ V T
Sbjct: 124 FDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTAT 183
Query: 292 LWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHEL 351
LWG+ +K Q PVL++K +V+DF G+S+ + S+ + NPD EA++L
Sbjct: 184 LWGEDADKFDGSRQ--------PVLAIKGARVSDFGGRSLSVLSSSTIIANPDIPEAYKL 235
Query: 352 REWFDSGGK 360
R WFD+ G+
Sbjct: 236 RGWFDAEGQ 244
>gi|402592315|gb|EJW86244.1| hypothetical protein WUBG_02846 [Wuchereria bancrofti]
Length = 613
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 140/501 (27%), Positives = 247/501 (49%), Gaps = 28/501 (5%)
Query: 70 NSGTFRAPNAGSIVRSFQPTVQPPYQPPPNFRNHGPI---------LKNEAPARIIPIAA 120
N +R N + + + + ++ P + + P+ L N + PI
Sbjct: 123 NPSDYRGLNPNANMHNTRLELRSPQKGSSTSGQNAPLRCSGSSSRRLANLVGQNLTPIKL 182
Query: 121 LNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEI 180
+ PY +W I VTAK DLR R D KVF+F+L D +GG IR+ F+ V + FY I
Sbjct: 183 ITPYVNKWRICGVVTAKEDLRNIRTVRRDMKVFNFELTDEEGGCIRIAAFDDVAEEFYSI 242
Query: 181 IEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTE-EDDSIPKQQFSFRHIS 239
I+ G ++ +S G++K A K FN +++EI + + S V C + E PK S +
Sbjct: 243 IQKGSMFYVSGGTVKQANKRFNTTGHDYEITIRSDSEVSPCLDREKIEQPKLSLSIVRLC 302
Query: 240 EIESAENNSIVDVIGIVISVNPSVPILRKN-GMETQRRILNLKDTSGRSVELTLWGDFCN 298
+ + SI D+I IV VN + + +N G + ++R + L DTS + LT WG+
Sbjct: 303 NVANHVGESI-DIIAIVEKVNDIMQVTARNTGTQLEKRDIVLIDTSETEITLTFWGEQAR 361
Query: 299 KEGQKLQEMVDVGFFPVLSVKSGKVNDFSGK-SIGTIPSTQLFINPDFAEAHELREWFDS 357
++++ + +K V +F+G S+ T S+++ +N D AE L +W+
Sbjct: 362 LYDKEIEGQ-------TIGIKGTFVKEFNGNLSLSTASSSRIELNMDCAETASLYKWYRE 414
Query: 358 GGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGR-SEKPDWVTVRAFITFIKSDSFC 416
+ +++ + + + + GLGR SEK + A I+ +K+D
Sbjct: 415 TRPSVQARNLTTTGLTADSYGRDLRIIRLSEFCGLGRDSEKGTLFNITAMISSLKADGAL 474
Query: 417 YTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQE 476
Y +C G C KKV + N+++C++C+ +D+ Y L+ +I D +G WVT F++
Sbjct: 475 YKSC----GTNGCKKKVIEINNQYRCEKCDITLDKYKYVLLMTMEISDFSGSHWVTVFED 530
Query: 477 SGEEILGCPAKEL-YMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITV 535
++L A++L +L +L D+ + E+ + F +Y FR++ K E Y E+++K +V
Sbjct: 531 KAVKLLKSDAEQLGQLLDNDLLDE--YNEVFNAVRFREYTFRIRAKSEFYNGEEKIKWSV 588
Query: 536 IRADQVNYSSESRYLLDLISK 556
++VN+ L +SK
Sbjct: 589 FDINEVNHDKYIDELTRAVSK 609
>gi|294929957|ref|XP_002779439.1| replication protein A 70kDa, putative [Perkinsus marinus ATCC
50983]
gi|239888547|gb|EER11234.1| replication protein A 70kDa, putative [Perkinsus marinus ATCC
50983]
Length = 788
Score = 205 bits (522), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 149/471 (31%), Positives = 241/471 (51%), Gaps = 44/471 (9%)
Query: 94 YQPPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVF 153
Y P + GP+ + IIPI+ L+ Y +W IK RV++K D+R + NARG+G++F
Sbjct: 296 YGGPQQPHSSGPVSYRPVASDIIPISQLSVYSQKWTIKGRVSSKSDVRTFVNARGEGQLF 355
Query: 154 SFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLE 213
S +L+D GEIR T FN+ V +FY I+ GRVY SKG +K A FN +E+
Sbjct: 356 SIELVDDQNGEIRATFFNSAVTKFYPAIQQGRVYTFSKGQVKQANARFNP-GAAYELTFN 414
Query: 214 ATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNP-SVPILRKNGME 272
+ ++ + D IP+ + I+ I+ + VD+ GI+ P S ++R G E
Sbjct: 415 DDAIIEEANDSAD-IPRILYKISKIATIQDRNADEFVDLCGIITHCAPISTIVVRNTGQE 473
Query: 273 TQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVD---VGFFPVLSVKSGKVNDFSGK 329
RR + D SG S+E+T+WG+ G VD V + PV+ +K+ +++++ GK
Sbjct: 474 RARRNFTIVDDSGCSIEMTVWGETAQNCG------VDENRVQYHPVVMIKNARISNYGGK 527
Query: 330 SIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKN 389
S+ T +T L ++PD + A E++ W+ GG+ A ++S A KTV +
Sbjct: 528 SLTTASTTTLEVDPDDSRAFEVKNWWLQGGQTGAVQALSSGGGG--AGGNAPKTVIDVMR 585
Query: 390 ---------EGLGRSEKPDWVTV------RAFITFI-KSDS--FCYTACPLMIGD----- 426
G S+ P+ V RA + I KS+ YT+C I D
Sbjct: 586 MDNNLYLSLSGQASSDVPNSRPVNTHNIPRATVAQIYKSNDKPLYYTSCITEIPDGRGGI 645
Query: 427 RQCNKKVTQ--SGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGC 484
R+C+KKV Q S W C +Q +C RY++ ++ D +G V AF E + +LG
Sbjct: 646 RKCSKKVEQDISTGTWSCIEGHQN-PQCMPRYIISIKLADISGEVMVRAFDEQAQALLGV 704
Query: 485 PAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITV 535
A++ M+ +D++ +I + F + RL+ K+E+Y DE+RV +++
Sbjct: 705 SAQD--MMNGMGEDEIE--TLINNTQFKKINVRLRSKKEVYTDEERVNVSM 751
>gi|401410388|ref|XP_003884642.1| hypothetical protein NCLIV_050400 [Neospora caninum Liverpool]
gi|325119060|emb|CBZ54612.1| hypothetical protein NCLIV_050400 [Neospora caninum Liverpool]
Length = 919
Score = 205 bits (521), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 146/463 (31%), Positives = 235/463 (50%), Gaps = 34/463 (7%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
IP+ L Y +W I+ARV KGD+R+YN ARG G++F+ +L D D GEIR T FN+ V
Sbjct: 466 FIPLKDLTAYVAKWTIRARVDVKGDIRKYNGARGPGQLFNVELKDKD-GEIRATFFNSAV 524
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEI-FLEATSTVDLCTEEDDSIPK-QQ 232
D++Y +++ G+VY G +KP FNH ++++E+ F E +S V+ E IP +
Sbjct: 525 DKWYNVLQEGKVYYFRGGLVKPKNPRFNHTRHDYELTFDEKSSIVE--AEPGADIPSISR 582
Query: 233 FSFRHISEIESAENNSIVDVIGIVISVNPSVPI-LRKNGMETQRRILNLKDTSGRSVELT 291
I IE E NS V +I IV P I ++ G + +R + L D GRS+ LT
Sbjct: 583 ADLVDIRGIEEKEVNSTVSLIAIVHDYRPIQSITIKSTGQQKPKRDVFLVDEGGRSLALT 642
Query: 292 LWGDFCN--KEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAH 349
LWGD E Q Q+ P++ KS KV D++GK + + +T++ + PD +
Sbjct: 643 LWGDKTETIPEDQLSQK-------PIVLFKSVKVGDWNGKKLDSQGNTRIELFPDGNRSA 695
Query: 350 ELREWFD-SGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGR-----SEKPDWVTV 403
EL++W++ G + + SIS G + EI K++ Q+ E S+K + T
Sbjct: 696 ELQDWWNREGSQRGSFASISGGGGLGVGRKEILKSLEQVAQEAAQAEASVLSDKGVYATS 755
Query: 404 RAFITFIKSDSFCYTACPLMIGDRQCNKKVTQS-GNRWQCDRCNQEIDECDYRYLLQAQI 462
A + I D F + ACP C KK+++ WQC C ++ ++ ++ Y+L +
Sbjct: 756 CALLERIGDDRFSWPACP------DCRKKMSEEVTGCWQCPSCRKQCEQPNHTYMLNMSL 809
Query: 463 QDQTGLTWVTAFQESGEEILGCPAKELYMLKYE---LQDDVR-FGEIIRSRVFNQYLFRL 518
D TG + E EE +G E +L E L + R F +I +++FR+
Sbjct: 810 MDLTGSLRCSCMGEKAEEFMGNTKAETVLLLAEHRALDEQGRSFQDIFADANLEEWIFRI 869
Query: 519 KIKEELYGDEQRVKITVIRADQV--NYSSESRYLLDLISKSFR 559
K + + DE +K V+ A + ++++ LD + +F
Sbjct: 870 CSKYDSWMDEVSIKQRVVAAAPLFRRVGEQTQHRLDFVRTAFH 912
>gi|390367630|ref|XP_003731293.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Strongylocentrotus purpuratus]
Length = 575
Score = 204 bits (520), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 116/374 (31%), Positives = 202/374 (54%), Gaps = 20/374 (5%)
Query: 186 VYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAE 245
VY +S+G+LKPA + + + N++E+ + V+ C EED SIP QF F+ IS +E
Sbjct: 211 VYFVSRGTLKPANRQYTSINNDYELTFNNDTMVEPCVEEDVSIPAVQFDFKSISHLEDTP 270
Query: 246 NNSIVDVIGIVISVNPSVPI-LRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKL 304
+S++DVIG+ S + + ++ + E +R L L D S + +
Sbjct: 271 EDSMIDVIGVCKSTSDLTAVTIKSSNREVNKRSLQLVDDSQNEPLASNSAE--------- 321
Query: 305 QEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSG---GKN 361
E D PV++VK +++ F G+S+ + ++ +NPD +AH L+ W + ++
Sbjct: 322 AEDFDGSGNPVIAVKGARLSGFGGRSLSVLQNSIFQVNPDIPKAHHLKGWCLTARVTPQD 381
Query: 362 AATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACP 421
+ ++S + GG N T + + LG+ EKPD+ TV+ I F++ ++ Y ACP
Sbjct: 382 SQSISTRQGSGGGGGANTNWMTFHDVHAQNLGQGEKPDYFTVKGTILFVRKENCMYMACP 441
Query: 422 LMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEE 480
+CNKKV+++G+ ++C++C+++ + YR LL A + D T W T FQE+ E+
Sbjct: 442 ----SAECNKKVSENGDGSYRCEKCSKDYENFKYRLLLSANVADSTDNQWATCFQETAEQ 497
Query: 481 ILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQ 540
+L A+EL LK Q++ F ++ + F Y+FR++IK E Y +E R+K T + A
Sbjct: 498 LLLKSAQELGSLKD--QNEKEFNQVFQDACFIDYMFRMRIKMETYNEEARLKCTCVSAQP 555
Query: 541 VNYSSESRYLLDLI 554
+N + L+ I
Sbjct: 556 INVRDYTNKLIKDI 569
>gi|440797647|gb|ELR18729.1| replication factora protein 1 (rpa1) subfamily protein
[Acanthamoeba castellanii str. Neff]
Length = 646
Score = 204 bits (520), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 144/487 (29%), Positives = 230/487 (47%), Gaps = 52/487 (10%)
Query: 76 APNAGSIVRSFQPTVQPPYQPPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVT 135
+P A + R+ T P++ P P K + I +A LNPY RW I+ +VT
Sbjct: 201 SPLAAVLPRTSGSTHASPFRSTPPRLQASP--KADDVGVITSVADLNPYLSRWTIRVKVT 258
Query: 136 AKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLK 195
+KGD++ Y ARG GK+ + DL+D G EIR FN VD+F II+ G VY I K +LK
Sbjct: 259 SKGDVKHYQTARGPGKLLAIDLMDVAGTEIRAVMFNEAVDKFESIIQQGNVYSIEKATLK 318
Query: 196 PAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGI 255
A K F+H+ N++EI + S V+ D+ P F +S+I + + ++
Sbjct: 319 VANKKFSHINNDYEITISPASVVEAVA---DTFPGLVCHFAPLSDIREKKADDLL----- 370
Query: 256 VISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNK-EGQKLQEMVDVGFFP 314
N ++ ++R L L + SVELTLWG EG
Sbjct: 371 -------------NTIDLEKRSLALS-SREVSVELTLWGQAAASFEGSAGD--------- 407
Query: 315 VLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAA- 373
VL +KS KV+++ + L A G A++ SR A
Sbjct: 408 VLGLKSVKVSEWQETFV-------LCATERMKPAMGYYPGKSLGATQASSYGSSRLFPAR 460
Query: 374 GGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSD---SFCYTACPLMIGDRQCN 430
K E KT+ +IK L S +V V A + FIK D + Y +CP + C
Sbjct: 461 RKHKAEAVKTIQEIK--ALDVSGGSAFVVVNATVAFIKYDISGNTYYRSCP----NESCA 514
Query: 431 KKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELY 490
+KV G ++C+ CN D C YRY++ ++ D T W T F + G +LG PA E+
Sbjct: 515 RKVVDVGGSYRCEMCNASYDHCQYRYVMSVRLIDHTDSLWATVFNDVGATLLGVPASEVA 574
Query: 491 MLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGD-EQRVKITVIRADQVNYSSESRY 549
+ D E++ + +++ +L++ EE +G+ ++R++ T++ A+ +NY++ +
Sbjct: 575 DICENRSDQRALEEVMNRGLLHKWRLKLRVAEESWGNFDKRIRATIMSAEPLNYAASASD 634
Query: 550 LLDLISK 556
+ IS+
Sbjct: 635 VTSSISR 641
>gi|84995782|ref|XP_952613.1| replication factor-a protein 1 [Theileria annulata strain Ankara]
gi|65302774|emb|CAI74881.1| replication factor-a protein 1, putative [Theileria annulata]
Length = 625
Score = 204 bits (520), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 147/488 (30%), Positives = 241/488 (49%), Gaps = 48/488 (9%)
Query: 66 FSTPNSGTFRAPNAGSIVRSFQPTVQPPYQPPPNFRNHGPILKNEAPARIIPIAALNPYQ 125
++P SG R V+ T+ PY PP N K + + I+ L Y
Sbjct: 148 LNSPVSGPVRKQENNRTVK----TISNPYDPPMN--------KGKKDVPLTKISDLTLYT 195
Query: 126 GRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGR 185
+W I+ARV K ++R++NN RG+ ++FS DL DS+G EIR F V+++Y +E G+
Sbjct: 196 PKWQIRARVVFKSEIRKFNNQRGESQLFSVDLCDSNG-EIRAVFFGESVNKWYSFLEEGQ 254
Query: 186 VYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAE 245
VY IS G LKPA K +N+LK+ E+ L+ +S + L + D+SIP +SF + +++ +
Sbjct: 255 VYSISGGQLKPANKRYNNLKHSCELILDESSYIQL-FQNDESIPSFCYSFTPLDQLQDIK 313
Query: 246 NNSIVDVIGIVISVNPSVPILRK-NGMETQRRILNLKDTSGRSVELTLWG---DFCNKEG 301
+ +DVI IV++ I K G ++R L D++ +V +T WG N EG
Sbjct: 314 SGETIDVIAIVVTARDLQKINNKATGNNVEKRDFLLCDSTNTTVWVTSWGQKTQLFNYEG 373
Query: 302 QKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKN 361
P++ +K KV ++ GK + STQ+ P EA +LR+W++ G N
Sbjct: 374 DNSH--------PLVCLKGVKVGEWQGKKLDVQISTQVICEPVIPEALKLRKWWNENGHN 425
Query: 362 AATVSISREIAAGGAKNEIHK--TVSQI---KNEGLG-RSEKPDWV--TVRAFITFIKSD 413
++ +E N +K T+S I N+GL +S + + T R I +K
Sbjct: 426 ---INFKQETVKTN-NNFFNKLCTISHIISSTNQGLQFKSIDSNGMVFTTRGLIEVLKDT 481
Query: 414 SFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTA 473
+FC+ +C C KK++ W C +CN + + Y+L +I D++ W +A
Sbjct: 482 NFCFPSC------TGCRKKMSNDQGCWYCSKCNSSTNPI-HLYILNIKIVDESSHIWASA 534
Query: 474 FQESGEEILGCPAKELYMLKYE---LQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQR 530
+ GE I+G A L L +++ F +Y+F++K E + DE R
Sbjct: 535 MADVGESIMGIKAYNLINLMERGPSNENEKSFINYFEDARLTEYIFKIKATVENFMDEPR 594
Query: 531 VKITVIRA 538
+K V++A
Sbjct: 595 IKYRVLKA 602
>gi|47227767|emb|CAG08930.1| unnamed protein product [Tetraodon nigroviridis]
Length = 416
Score = 204 bits (520), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 112/301 (37%), Positives = 172/301 (57%), Gaps = 34/301 (11%)
Query: 86 FQPTVQPPYQP----PPNFRNHGPILKNEAP---ARIIPIAALNPYQGRWAIKARVTAKG 138
P++ PP Q +F GP P ++++PIA+LNPYQ +W I+AR+T K
Sbjct: 118 LSPSLTPPEQKRKGFSKDFGKKGPSAMPSTPGGGSKVVPIASLNPYQSKWTIRARITNKS 177
Query: 139 DLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQ 198
+R ++NARG+GK+FS +++D + GEIR T FN VD+F+ +IEVG+VY ISK +LK A
Sbjct: 178 SIRTWSNARGEGKLFSMEMVD-ESGEIRTTGFNQEVDKFFSLIEVGKVYYISKCTLKIAN 236
Query: 199 KNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVIS 258
K + +KN++E+ L ST+ C + D +P Q F IS++E+ E ++IVDVIG+ S
Sbjct: 237 KQYTSVKNDYEMTLNGESTIIPCEDSCD-VPLVQCDFVSISDLENKEKDAIVDVIGVCKS 295
Query: 259 VNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNK------------------- 299
V+ + + ++ E +R L+L D SG+ V +TLWG+
Sbjct: 296 VDEATRLTTRSNREVSKRTLHLMDMSGKLVTVTLWGEEVRTVRGTSVRRSFTLLNIRMKT 355
Query: 300 ------EGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELRE 353
+L E D PV+++K K++DF G+S+ S+ L INPD EA++LR
Sbjct: 356 ATRFPGRMNRLAENFDGSGEPVVAIKGAKLSDFGGRSLSASFSSTLMINPDIPEAYKLRG 415
Query: 354 W 354
W
Sbjct: 416 W 416
>gi|359484959|ref|XP_003633189.1| PREDICTED: LOW QUALITY PROTEIN: replication factor A protein 1-like
[Vitis vinifera]
Length = 390
Score = 204 bits (519), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 129/385 (33%), Positives = 212/385 (55%), Gaps = 19/385 (4%)
Query: 182 EVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEI 241
++G+VY ISKG++K A K F + L S V+ + E+ IP +F F I E+
Sbjct: 10 QLGKVYYISKGAIKVANKQFKTVHLHXXNALNENSEVEEGSNEETLIPXAKFKFVEIEEM 69
Query: 242 ESAEN-NSIVDVIGIVISVNPSVPILRKNGME-TQRRILNLKDTSGRSVELTLWGDFCNK 299
N V V G+V SV+P++ I RK+ + +R + D + ++V ++LW D
Sbjct: 70 GPYVNGKERVYVSGVVQSVSPTMRIQRKSHNDIVPKRDITFADKTKKTVVVSLWNDHATN 129
Query: 300 EGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGG 359
GQ+L + D FP++++KS KV DF S+ T+ + + +NPD E +L W+DS
Sbjct: 130 VGQELLDNADK--FPIVAIKSLKVGDFQVVSLSTLSESIVLVNPDTRETKKLISWYDSEC 187
Query: 360 KNAATVSISREIA---AGGAKNEIHKTVSQ---IKNEGLGRSEKPDWVTVRAFITFIKSD 413
K A+ SI +I+ GG ++ + VS N LG +KP + ++RA+I+FIK D
Sbjct: 188 KGASMASIGSDISPSSKGGVRSMYYDRVSLSHVTSNPSLGE-DKPSFFSIRAYISFIKPD 246
Query: 414 -SFCYTACPLMIGDRQCNKKVTQS-GNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWV 471
+ Y AC + CNKKVT + G+ + C+ C + DEC RY++ ++ D +G W+
Sbjct: 247 QTMWYRAC------KTCNKKVTDAIGSEYWCEGCQKNDDECSLRYIMVVKVSDASGEAWL 300
Query: 472 TAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRV 531
+ F + E I GC A EL LK + ++ F + ++ ++ LFR+ + + Y +E+R
Sbjct: 301 SLFNDQAERIFGCSADELDKLKSQEGEENLFQQKLKEAIWVPQLFRISVAQHEYMNEKRQ 360
Query: 532 KITVIRADQVNYSSESRYLLDLISK 556
+IT V++++ESR LL+ ISK
Sbjct: 361 RITARAVVPVDFAAESRLLLEEISK 385
>gi|323449521|gb|EGB05408.1| hypothetical protein AURANDRAFT_11223 [Aureococcus anophagefferens]
Length = 366
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 119/375 (31%), Positives = 201/375 (53%), Gaps = 26/375 (6%)
Query: 117 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDR 176
P+A+LNPY RW +KA+V K D+ ++NARGDG +F L D+DG EI F +
Sbjct: 1 PVASLNPYMNRWTLKAKVAVKNDIVSWSNARGDGTLFKVTLADADGEEIEAVFFKEACAK 60
Query: 177 FYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDD---SIPKQQF 233
++ + G VY S G +KP+ ++ K +E+ + S ++ C + I ++
Sbjct: 61 YHAALVEGGVYYFSGGKVKPSNPRYSATKCGYEVTFDMASKIEACADASGIGLCIGGTKY 120
Query: 234 SFRHISEIESAENNSIVDVIGIVISVNPSVPILRK--NGMETQRRILNLKDTSGRSVELT 291
F IS +E A+ ++DV+ +V + ++ + G +R + L D SG V LT
Sbjct: 121 DFVKISALEQADEGQVIDVLAVVKTAEDCAEVVSQKLGGKTLTKRDVTLVDASGVDVRLT 180
Query: 292 LWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSG-KSIGTIPSTQLFINP-DFAEAH 349
LWG+ ++ PV+++K KV+++ G KS+G + S+++ P D A
Sbjct: 181 LWGERAKQD--------QFAAAPVVALKGVKVSEYQGTKSLGFLRSSRVAFEPEDAAGYE 232
Query: 350 ELREWFDSGGKNAATVSISR-EIAAGGAKNEI---HKTVSQIKNEG-LGRSEKPDWVTVR 404
EL+ W+ +GG +AA+ S+SR A GG K E + + +K++ G+ +KPD+ T +
Sbjct: 233 ELKAWWANGGASAASTSLSRVSNAGGGLKGEKFADRRGLQDLKDDARFGQGDKPDYATFK 292
Query: 405 AFITFIKSDSFCYTACPLMIGDRQCNKKVTQ-SGNRWQCDRCNQEIDECDYRYLLQAQIQ 463
A + +K D Y +C GD C KKVTQ + + C++C +EC+ RY++
Sbjct: 293 ATLMKVKEDRLWYESC----GD-GCQKKVTQGTDGTYSCEKCGTTKEECERRYIVSCCFV 347
Query: 464 DQTGLTWVTAFQESG 478
D +G +WV+AF ++G
Sbjct: 348 DASGSSWVSAFNDAG 362
>gi|170580146|ref|XP_001895135.1| replication factor A 73 kDa subunit [Brugia malayi]
gi|158598024|gb|EDP36015.1| replication factor A 73 kDa subunit, putative [Brugia malayi]
Length = 613
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 141/501 (28%), Positives = 246/501 (49%), Gaps = 28/501 (5%)
Query: 70 NSGTFRAPNAGSIVRSFQPTVQPPYQPPPNFRNHGPI---------LKNEAPARIIPIAA 120
N +R N + + + +P ++ P + + P+ L N + PI
Sbjct: 123 NPNDYRGLNPNANMHNTRPELRSPQKGGSTSGQNTPLRYGGSSSRRLANLVGQNLTPIKL 182
Query: 121 LNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEI 180
+ PY +W I VTAK DLR R D KVF+F+L D +GG IR+ F+ V + FY I
Sbjct: 183 ITPYVNKWRICGVVTAKEDLRNIRTVRRDMKVFNFELTDEEGGCIRIAAFDDVAEEFYSI 242
Query: 181 IEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTE-EDDSIPKQQFSFRHIS 239
I+ G ++ +S G++K A K FN +++EI + + S V C + E PK S +
Sbjct: 243 IQKGSMFYVSGGTVKQANKRFNTTGHDYEITIRSDSEVSPCLDREKIEQPKLSLSIVRLC 302
Query: 240 EIESAENNSIVDVIGIVISVNPSVPILRKN-GMETQRRILNLKDTSGRSVELTLWGDFCN 298
+ + S VD+I IV VN + + +N G + ++R + L D S + LT WG+
Sbjct: 303 NVANHVGES-VDIIAIVEKVNDIMQVTARNTGAQLEKRDIVLIDASETEITLTFWGEQAR 361
Query: 299 KEGQKLQEMVDVGFFPVLSVKSGKVNDFSGK-SIGTIPSTQLFINPDFAEAHELREWFDS 357
Q+++ + +K V +F+G S+ T S+++ +N + AE L +W+
Sbjct: 362 LYDQEIEGQ-------TIGIKGAFVKEFNGSLSLSTGNSSRIELNMECAETANLYKWYRE 414
Query: 358 GGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGR-SEKPDWVTVRAFITFIKSDSFC 416
+ +++ + + + + GLGR SEK + + A I+ +K+D
Sbjct: 415 TRPSIQARNLTTTGLTTDSYGRDLRIICLSEFCGLGRDSEKGTFFNITAMISSLKADGAL 474
Query: 417 YTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQE 476
Y +C G C KKV + N+++C++C+ +D+ Y L+ +I D +G WVT F++
Sbjct: 475 YKSC----GTNGCKKKVIEINNQYRCEKCDITLDKYKYVLLMTMEISDFSGSHWVTVFED 530
Query: 477 SGEEILGCPAKEL-YMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITV 535
++L A++L +L L D+ + E+ + F +Y FR++ K E Y E++ K +V
Sbjct: 531 KAVKLLKTDAEQLGQLLDNNLLDE--YNEVFNAVRFREYTFRIRAKSEFYNGEEKNKWSV 588
Query: 536 IRADQVNYSSESRYLLDLISK 556
++VNY L +SK
Sbjct: 589 FDINEVNYDKYIDELTRAVSK 609
>gi|359484858|ref|XP_003633177.1| PREDICTED: LOW QUALITY PROTEIN: replication factor A protein 1-like
[Vitis vinifera]
Length = 448
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 129/384 (33%), Positives = 212/384 (55%), Gaps = 18/384 (4%)
Query: 182 EVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEI 241
++G+VY ISKG++K A K F + L S V+ + E+ IP +F F I E+
Sbjct: 69 QLGKVYYISKGAIKVANKXFKTVHLHXXNALNENSEVEEGSNEETLIPXAKFKFVEIEEM 128
Query: 242 ESAEN-NSIVDVIGIVISVNPSVPILRKNGME-TQRRILNLKDTSGRSVELTLWGDFCNK 299
N V V G+V SV+P++ I RK+ + +R + D + ++V ++LW D
Sbjct: 129 GPYVNGKECVYVSGVVQSVSPTMRIRRKSHNDIVPKRDITFADKTKKTVVVSLWNDHATN 188
Query: 300 EGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGG 359
GQ+L + D FP++++KS KV DF S+ T+ + + +NPD E +L W+DS
Sbjct: 189 VGQELLDNADK--FPIVAIKSLKVGDFQVVSLSTLSESIVLVNPDTREXKKLISWYDSEC 246
Query: 360 KNAATVSISREIA--AGGAKNEIHKTVSQ---IKNEGLGRSEKPDWVTVRAFITFIKSD- 413
K A+ SI +I+ GG ++ + VS N LG +KP + ++RA+I+FIK D
Sbjct: 247 KGASMASIRSDISPSKGGVRSMYYDRVSLSHVTSNPSLGE-DKPSFFSIRAYISFIKPDQ 305
Query: 414 SFCYTACPLMIGDRQCNKKVTQS-GNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVT 472
+ Y AC + CNKKVT + G+ + C+ C + DEC RY++ ++ D +G W++
Sbjct: 306 TMWYRAC------KTCNKKVTDAIGSGYWCEGCQKNDDECSLRYIMVVKVSDASGEAWLS 359
Query: 473 AFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVK 532
F + E I GC A EL LK + ++ F + ++ ++ LFR+ + + Y +E+R +
Sbjct: 360 LFNDQAERIFGCSADELDKLKSQEGEENLFQQKLKEAIWVPQLFRISVAQHEYMNEKRQR 419
Query: 533 ITVIRADQVNYSSESRYLLDLISK 556
IT V++++ESR LL+ ISK
Sbjct: 420 ITARAVVPVDFAAESRLLLEEISK 443
>gi|82539990|ref|XP_724343.1| replication A protein [Plasmodium yoelii yoelii 17XNL]
gi|23478957|gb|EAA15908.1| putative replication A protein [Plasmodium yoelii yoelii]
Length = 1168
Score = 201 bits (512), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 144/449 (32%), Positives = 234/449 (52%), Gaps = 38/449 (8%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
++PI L+ Y +W IKARV +K ++R++ +GKVF+ +L D + GEI+V F V
Sbjct: 706 LMPINKLSQYSTKWIIKARVQSKDNIRKFYTGNKEGKVFNIELCD-ESGEIKVNFFGKAV 764
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
D++Y+ +EVG++Y ISKG++K A K FN LK++ EI L+ S ++L E D +IPK ++
Sbjct: 765 DKWYDYLEVGKIYKISKGNIKSANKKFNTLKHDCEITLDENSILELLEENDMNIPKYIYN 824
Query: 235 FRHISEIESAENN-SIVDVIGIVISVNPSVPIL-RKNGMETQRRILNLKDTSGRSVELTL 292
F ISEI++ N ++VDVIGIV+S IL +K G +++ L L D + ++ +TL
Sbjct: 825 FYSISEIKANMNTGTLVDVIGIVLSFQELNQILIKKTGQYKEKKDLMLIDETNETINVTL 884
Query: 293 WGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELR 352
WG+ K++EM ++ ++ K KV ++ GK + + P T++ INP+ +A+ L+
Sbjct: 885 WGE----NAVKMEEM-NITENCIICFKCLKVGEWQGKKLESHPKTKVEINPELDKAYTLK 939
Query: 353 EWFDSGGKNAATVSISREIAAGGA--KNEIHKTVSQI-KNEGLGRSE----KPDWVTVRA 405
W+ + KN + E KT+ +I KN L E K T
Sbjct: 940 NWWVNNKKNVYNTINLTTTTSNNNMLNLESQKTIQEIKKNVNLANEEVLSGKGIIFTTFG 999
Query: 406 FITFIKSDSFCYTACPLMIGDRQCNKK----VTQSGNR---------WQCDRCNQEIDEC 452
FI I + Y+ACP CNKK V + G + C +CN+
Sbjct: 1000 FIDHIYNAIPVYSACP------NCNKKMVATVIEDGEQDMDQNVSESMYCAKCNKNNIPV 1053
Query: 453 DYRYLLQAQIQDQTGLTWVTAFQESGEEIL-GCPAKELYMLKYEL--QDDVRFGEIIRSR 509
Y Y + +I D T V+AF S + I+ G A+E L+ E Q+++ ++I
Sbjct: 1054 -YNYSINLKITDNTDSLRVSAFANSAKTIMNGLSAEEFMKLRQEYISQENIENFDLIEKA 1112
Query: 510 VFNQYLFRLKIKEELYGDEQRVKITVIRA 538
N++ FR+K + DE + T++
Sbjct: 1113 KLNEFFFRIKAYMTSHMDEIKKNYTILET 1141
>gi|71030044|ref|XP_764664.1| replication factor A protein [Theileria parva strain Muguga]
gi|68351620|gb|EAN32381.1| replication factor A protein, putative [Theileria parva]
Length = 458
Score = 201 bits (512), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 145/482 (30%), Positives = 240/482 (49%), Gaps = 55/482 (11%)
Query: 66 FSTPNSGTFRAPNAGSIVRSFQPTVQPPYQPPPNFRNHGPILKNEAPARIIPIAALNPYQ 125
++P SG R V+ T+ PY PP N K + + I+ L Y
Sbjct: 4 LNSPVSGPVRKQENSRTVK----TISNPYDPPVN--------KTKKDVPLTKISDLTLYT 51
Query: 126 GRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGR 185
+W+I+ARV K ++R++NN RG+ ++FS DL DS+G EIR F V+++Y +E G+
Sbjct: 52 PKWSIRARVVFKSEIRKFNNQRGESQLFSVDLCDSNG-EIRAVFFGESVNKWYSFLEEGQ 110
Query: 186 VYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAE 245
VY IS G LKPA K FN+LK+ E+ L+ +S + L + D+SIP +SF + +++ +
Sbjct: 111 VYSISGGQLKPANKRFNNLKHTCELILDESSHIQL-FQNDESIPSFCYSFTPLDQLQDVK 169
Query: 246 NNSIVDVIGIVISVNPSVPILRKN-GMETQRRILNLKDTSGRSVELTLWG---DFCNKEG 301
+ +DVI IV++ I K+ G ++R L D++ +V +T WG N +G
Sbjct: 170 SGETIDVIAIVVTAKDVQKINNKSTGNNVEKRDFLLCDSTNTTVWVTSWGQKTQLFNYQG 229
Query: 302 QKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKN 361
+ + V ++ GK + STQ+ P EA +LR+W++ +N
Sbjct: 230 ENSHPL---------------VGEWQGKKLDVQGSTQVICEPVIPEALKLRKWWN---EN 271
Query: 362 AATVSISREIA--AGGAKNEIHKTVSQI---KNEGLG-RSEKPDWV--TVRAFITFIKSD 413
+ V+ +E++ N++ T+S I N+GL +S + + T RA I +K
Sbjct: 272 SQNVNFQQEVSKTTNSTFNKLC-TISHIISSTNQGLQFKSIDSNGMVFTTRALIEVLKDT 330
Query: 414 SFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTA 473
+FC+ +C C KK+T W C +CN + + Y+L +I D+T W TA
Sbjct: 331 NFCFPSC------TGCRKKMTNDQGIWYCPKCNSSTNPV-HLYILNIKIVDETSHIWATA 383
Query: 474 FQESGEEILGCPAKELYMLKY---ELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQR 530
+ GE I+G A +L L +++ F +Y+F++K E + DE R
Sbjct: 384 MSDVGESIMGIKAYKLIKLMENGPSDENEKNFVNYFEDARLTEYIFKIKATVENFMDEPR 443
Query: 531 VK 532
+K
Sbjct: 444 IK 445
>gi|66363290|ref|XP_628611.1| Rf-A (OB fold protein) [Cryptosporidium parvum Iowa II]
gi|46229828|gb|EAK90646.1| Rf-A (OB fold protein) [Cryptosporidium parvum Iowa II]
Length = 707
Score = 201 bits (512), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 140/486 (28%), Positives = 235/486 (48%), Gaps = 76/486 (15%)
Query: 105 PILKN-EAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARG-DGKVFSFDLLDSDG 162
P+ +N E P + PI + Y RW I RV +K D+R++++++ +GKVFSF++ D+DG
Sbjct: 201 PVSRNQEIP--VYPIKNITSYLHRWRIVGRVVSKSDIRKFSSSKTKEGKVFSFEICDADG 258
Query: 163 GEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCT 222
EIR TCF VD+FY++++ G VY S+G +K A FN +E+EI + +
Sbjct: 259 SEIRATCFTKAVDKFYDMLKEGEVYSFSRGDVKEANTRFNTTGHEFEIIFNEDAEIQ-SL 317
Query: 223 EEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPI-LRKNGMETQRRILNLK 281
+DD IPK+ F+F ISEI +D++GI++ P I ++ G +TQ+R L +
Sbjct: 318 PQDDRIPKKTFNFVPISEIRGYSKGQSLDLLGILLKAGPITTITVKSTGADTQKRELTII 377
Query: 282 DTSGRSVELTLWGDFCNKEGQKLQEMVDVGFF---PVLSVKSGKVNDFSGKSIGTIPSTQ 338
D SG S++LTLW + + +D G PV++VK+ V +F+G + S+
Sbjct: 378 DKSGHSIDLTLWSE---------RTHLDEGLISQNPVIAVKNAIVEEFNGFRLKLGSSSS 428
Query: 339 LFINPDFAE-AHELREWFDS------------------GGKNAATVSISREIAAGGAKNE 379
+ NP E + EL+ WF S G N+++ + I A
Sbjct: 429 IEWNPSGVEQSQELKNWFFSQSNLHESVVSLSSSSPSPGNTNSSSSAKRLSIDEIVATAT 488
Query: 380 IHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQ---- 435
+ S + + G+ WV I I+ + + +++CP +C +KVT+
Sbjct: 489 SGSSSSDMLDGGI-------WVHTYGTIRSIRDNKYYWSSCP------KCKRKVTEIEDP 535
Query: 436 -------------------SGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQE 476
G + C C Q I+ +Y+L +I D TG AF E
Sbjct: 536 NSINALVLPYGSEKETSTSLGPNYHCPSCQQSIENPIKKYILSCEIVDSTGTIRAVAFAE 595
Query: 477 SGEEIL-GCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITV 535
GE I+ G ++L LK + + ++F++++F+L K+ELY D + +K +
Sbjct: 596 HGETIMDGLSPEKLESLKENTDKNTE--DCFSDKLFSEWVFKLNGKKELYQDSEIIKYRI 653
Query: 536 IRADQV 541
A+ +
Sbjct: 654 FSAEDM 659
>gi|58372552|gb|AAW71479.1| replication protein A large subunit [Cryptosporidium parvum]
Length = 688
Score = 201 bits (511), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 140/486 (28%), Positives = 235/486 (48%), Gaps = 76/486 (15%)
Query: 105 PILKN-EAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARG-DGKVFSFDLLDSDG 162
P+ +N E P + PI + Y RW I RV +K D+R++++++ +GKVFSF++ D+DG
Sbjct: 182 PVSRNQEIP--VYPIKNITSYLHRWRIVGRVVSKSDIRKFSSSKTKEGKVFSFEICDADG 239
Query: 163 GEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCT 222
EIR TCF VD+FY++++ G VY S+G +K A FN +E+EI + +
Sbjct: 240 SEIRATCFTKAVDKFYDMLKEGEVYSFSRGDVKEANTRFNTTGHEFEIIFHEDAEIQ-SL 298
Query: 223 EEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPI-LRKNGMETQRRILNLK 281
+DD IPK+ F+F ISEI +D++GI++ P I ++ G +TQ+R L +
Sbjct: 299 PQDDRIPKKTFNFVPISEIRGYSKGQSLDLLGILLKAGPITTITVKSTGADTQKRELTII 358
Query: 282 DTSGRSVELTLWGDFCNKEGQKLQEMVDVGFF---PVLSVKSGKVNDFSGKSIGTIPSTQ 338
D SG S++LTLW + + +D G PV++VK+ V +F+G + S+
Sbjct: 359 DKSGHSIDLTLWSE---------RTHLDEGLISQNPVIAVKNAIVEEFNGFRLKLGSSSS 409
Query: 339 LFINPDFAE-AHELREWFDS------------------GGKNAATVSISREIAAGGAKNE 379
+ NP E + EL+ WF S G N+++ + I A
Sbjct: 410 IEWNPSGVEQSQELKNWFFSQSNLHESVVSLSSSSPSPGNTNSSSSAKRLSIDEIVATAT 469
Query: 380 IHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQ---- 435
+ S + + G+ WV I I+ + + +++CP +C +KVT+
Sbjct: 470 SGSSSSDMLDGGI-------WVHTYGTIRSIRDNKYYWSSCP------KCKRKVTEIEDP 516
Query: 436 -------------------SGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQE 476
G + C C Q I+ +Y+L +I D TG AF E
Sbjct: 517 NSINALVLPYGSEKETSTSLGPNYHCPSCQQSIENPIKKYILSCEIVDSTGTIRAVAFAE 576
Query: 477 SGEEIL-GCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITV 535
GE I+ G ++L LK + + ++F++++F+L K+ELY D + +K +
Sbjct: 577 HGETIMDGLSPEKLESLKENTDKNTE--DCFSDKLFSEWVFKLNGKKELYQDSEIIKYRI 634
Query: 536 IRADQV 541
A+ +
Sbjct: 635 FSAEDM 640
>gi|238502014|ref|XP_002382241.1| replication protein A 70 kDa DNA-binding subunit [Aspergillus
flavus NRRL3357]
gi|220692478|gb|EED48825.1| replication protein A 70 kDa DNA-binding subunit [Aspergillus
flavus NRRL3357]
Length = 375
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 125/385 (32%), Positives = 217/385 (56%), Gaps = 24/385 (6%)
Query: 177 FYEIIEVGRVYLISK-GSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSF 235
Y++ + G VY IS +K A+K F +L N++E+ E + V+ ++ D +P+ +FSF
Sbjct: 2 LYDVFQEGSVYYISSPCGVKLAKKQFTNLNNDYELTFERDTVVEKAEDQAD-VPQIRFSF 60
Query: 236 RHISEIESAENNSIVDVIGIVISVNPSVPILRKNGME-TQRRILNLKDTSGRSVELTLWG 294
I +++S E ++ +DVIG++ V I+ K + +R L L D++G SV LT+WG
Sbjct: 61 TTIGDLQSVEKDTTIDVIGVLKEVAEVSQIMSKTTNKPYNKRELTLVDSTGFSVRLTVWG 120
Query: 295 DFCNKEGQKLQEMVDVGFFP--VLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELR 352
++ P V++ K KV+DF G+S+ + S + ++PD EAH+L+
Sbjct: 121 ----------STALNFNVTPESVIAFKGVKVSDFGGRSLSLLSSGSMTVDPDIEEAHKLK 170
Query: 353 EWFDSGGKNAATVSISRE--IAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFI 410
W+D+ G++ S + +AA K E KTV+Q+K E LG S++ + +++A + +I
Sbjct: 171 GWYDAQGRDGVFASHASMPGVAASTTKLEQFKTVAQVKEEQLGMSDEVAYFSLKATVIYI 230
Query: 411 KSDSFCYTACPLMIGDRQCNKKVTQ-SGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLT 469
K D+ CY AC L G CNKKVT+ +W+C+RC++ +YRY++ + D TG
Sbjct: 231 KQDTMCYPAC-LSEG---CNKKVTELDPGQWRCERCDKTHPRPEYRYIMLISVSDHTGQL 286
Query: 470 WVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQ 529
+++ F E G ++G A +L ++ DD G+I + + FR + K + +GD+Q
Sbjct: 287 YLSCFDEVGRYMMGTSADQL--MEIRQNDDKAAGDIFQDANCRTWNFRCRAKIDNFGDQQ 344
Query: 530 RVKITVIRADQVNYSSESRYLLDLI 554
R++ ++ A VNYS E+ L ++I
Sbjct: 345 RIRCQIVTAKPVNYSEEALRLANMI 369
>gi|67603419|ref|XP_666551.1| replication protein A 70kDa [Cryptosporidium hominis TU502]
gi|54657572|gb|EAL36324.1| replication protein A 70kDa [Cryptosporidium hominis]
Length = 686
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 140/486 (28%), Positives = 234/486 (48%), Gaps = 76/486 (15%)
Query: 105 PILKN-EAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARG-DGKVFSFDLLDSDG 162
P+ +N E P + PI + Y RW I RV +K D+R++++++ +GKVFSF++ D+DG
Sbjct: 180 PVSRNQEIP--VYPIKNITSYLHRWRIVGRVVSKSDIRKFSSSKTKEGKVFSFEICDADG 237
Query: 163 GEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCT 222
EIR TCF VD+FY++++ G VY S+G +K A FN +E+EI + +
Sbjct: 238 SEIRATCFTKAVDKFYDVLKEGEVYSFSRGDVKEANTRFNTTGHEFEIIFNEDAEIQ-SL 296
Query: 223 EEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPI-LRKNGMETQRRILNLK 281
+DD IPK+ F+F ISEI +D++GI++ P I ++ G +TQ+R L +
Sbjct: 297 PQDDRIPKKTFNFVPISEIRGYSKGQSLDLLGILLKAGPITTITVKSTGADTQKRELTII 356
Query: 282 DTSGRSVELTLWGDFCNKEGQKLQEMVDVGFF---PVLSVKSGKVNDFSGKSIGTIPSTQ 338
D SG S++LTLW + + +D G PV++VK+ V +F+G + S+
Sbjct: 357 DKSGHSIDLTLWSE---------RTHLDEGLISQNPVIAVKNAIVEEFNGFRLKLGSSSS 407
Query: 339 LFINPDFAE-AHELREWFDS------------------GGKNAATVSISREIAAGGAKNE 379
+ NP E + EL+ WF S G N+ + + I A
Sbjct: 408 IEWNPSGVEQSQELKNWFFSQSNLHESVVSLSSSSPSPGNTNSNSSAKRLSIDEIVATAT 467
Query: 380 IHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQ---- 435
+ S + + G+ WV I I+ + + +++CP +C +KVT+
Sbjct: 468 SGSSSSDMLDGGI-------WVHTYGTIRSIRDNKYYWSSCP------KCKRKVTEIEDP 514
Query: 436 -------------------SGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQE 476
G + C C Q I+ +Y+L +I D TG AF E
Sbjct: 515 NSINALVLPYGSEKETSTSLGPNYHCPSCQQSIENPIKKYILSCEIVDSTGTIRAVAFAE 574
Query: 477 SGEEIL-GCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITV 535
GE I+ G ++L LK + + ++F++++F+L K+ELY D + +K +
Sbjct: 575 HGETIMDGLSPEKLESLKENTDKNTE--DCFSDKLFSEWVFKLNGKKELYQDSEIIKYRI 632
Query: 536 IRADQV 541
A+ +
Sbjct: 633 FSAEDM 638
>gi|429327218|gb|AFZ78978.1| replication factor-A protein 1, putative [Babesia equi]
Length = 646
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 137/431 (31%), Positives = 214/431 (49%), Gaps = 30/431 (6%)
Query: 116 IPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVD 175
+ I L Y +W I ARV K ++R++NN RG+ ++FS DL D+ G EIR F V
Sbjct: 190 VKITDLTLYTPKWLIHARVVYKTEIRKFNNQRGESQLFSADLCDAHG-EIRAIFFGEAVT 248
Query: 176 RFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSF 235
++Y +E G+VY IS G LKPA K FN LK+ E+ L+ S + L + DD IP +F
Sbjct: 249 KWYSFLEEGQVYSISGGQLKPANKRFNALKHSCEMILDENSHIQL-FQNDDKIPSICCTF 307
Query: 236 RHISEIESAENNSIVDVIGIVISVNPSVPILRK-NGMETQRRILNLKDTSGRSVELTLWG 294
+++++ + +DVIG+V+ N S I +K G +++ + + D++ ++ LTLWG
Sbjct: 308 TPLNQLDDIKIGESIDVIGVVVKTNDSQSIQQKGTGNVIEKKDVFIVDSTRTTICLTLWG 367
Query: 295 DFCNKEGQKLQEMVDVG--FFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELR 352
+ K Q + G PV+ +K KVN + GK + STQ+ I P EA ELR
Sbjct: 368 N-------KTQALNGKGSDSHPVICLKGVKVNSWQGKKLDAQGSTQITIEPVIPEALELR 420
Query: 353 EWF-DSGGKNAA------TVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRA 405
+W+ + GK ++S ++A + + L T RA
Sbjct: 421 KWWTNVKGKRIIDSPFNELCTLSHIVSATNQALQFKCKFDTVLTLFLAIDSNGMVFTTRA 480
Query: 406 FITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQ 465
I ++ +SF + ACP C K++ G+RW C RCN + Y+L +I D
Sbjct: 481 LIEILRDNSFSWPACP------GCRKRMVNEGDRWNCTRCNSSSSPI-HLYMLTLKIVDG 533
Query: 466 TGLTWVTAFQESGEEIL-GCPAKELYMLKYELQDDV---RFGEIIRSRVFNQYLFRLKIK 521
T WVTAF GE I+ G A E L + D F + ++++F++K
Sbjct: 534 TSHLWVTAFTGVGESIMNGVKAFEAVTLAEKGGVDANGRNFSNLFEEARLSEFVFKIKAT 593
Query: 522 EELYGDEQRVK 532
E + DE ++K
Sbjct: 594 VENFMDEPKIK 604
>gi|195108851|ref|XP_001999006.1| GI24277 [Drosophila mojavensis]
gi|193915600|gb|EDW14467.1| GI24277 [Drosophila mojavensis]
Length = 557
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 142/452 (31%), Positives = 226/452 (50%), Gaps = 35/452 (7%)
Query: 109 NEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVT 168
N+ +IPIA L+PY+ +W IKARV+ K + Y G++F+ +L D GEIRVT
Sbjct: 130 NQINEEVIPIAHLSPYKHKWIIKARVSGKTRIFSYKG----GRLFNMNLFDK-SGEIRVT 184
Query: 169 CFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSI 228
F D+F+ +I+ G VY I+ G +KPA ++ LKNE+E+ + V LC + D I
Sbjct: 185 AFKDQCDKFHSLIDDGNVYFIANGWIKPANTQYSQLKNEFEMIFIGETMVQLCDDNGD-I 243
Query: 229 PKQQFSFRHISEIESAENNSIVDVIGIVISVNP-SVPILRKNGMETQRRILNLKDTSGRS 287
P+ +F +S + + N V+ IGI V + I K E ++R L L D S +
Sbjct: 244 PEVKFDLIPLSHVSNMGNKEAVNTIGICTEVGKLDIRISTKTNKEFKKRELTLVDMSNAA 303
Query: 288 VELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSG-KSIGTIPSTQLFINPDFA 346
V LTLWGD +Q V+ VK +VN++ KS+ + L INPD
Sbjct: 304 VTLTLWGDEAVNFDGHVQS--------VILVKGSRVNEYGDWKSLNVGWGSTLKINPDIP 355
Query: 347 EAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAF 406
EAH+LR WFD+GG A + +R + K+ + LG ++PD+ A
Sbjct: 356 EAHKLRVWFDNGG--ADNIVSARRVELMTLKDAYFRN--------LGSGDRPDYFQCIAI 405
Query: 407 I-TFIKSDSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQD 464
+ I++++F Y ACP M CNKKV G+ ++C+ C+ Y ++ +I D
Sbjct: 406 VQNVIQTNAF-YKACPQM----NCNKKVVDVGDGLYRCESCDAVSPNFKYILRVKIKISD 460
Query: 465 QTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEEL 524
T V F + GE++L +E+ ++ D R +I + Y+F+L K +L
Sbjct: 461 YTSDREVICFGKIGEQLLRHTTQEV--VEALENDPARALQIFTDINYTLYIFKLSCKNKL 518
Query: 525 YGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
Y + +TV N +++L++ I++
Sbjct: 519 YNGKMISTLTVQSMTPFNCKKYNKHLINEINQ 550
>gi|302817221|ref|XP_002990287.1| hypothetical protein SELMODRAFT_131333 [Selaginella moellendorffii]
gi|300141996|gb|EFJ08702.1| hypothetical protein SELMODRAFT_131333 [Selaginella moellendorffii]
Length = 421
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 135/436 (30%), Positives = 222/436 (50%), Gaps = 28/436 (6%)
Query: 116 IPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVD 175
+PI +N + RW+++ARVT KG L + G V S D+ D++ EIR+ F
Sbjct: 1 MPIKDINDHCYRWSLRARVTHKGKLVFFETGTA-GCVMSVDVADAESSEIRIVGFGENAK 59
Query: 176 RFYEIIEVGRVYLISKGS-LKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDD-SIPKQQF 233
R IE G VY+ S S ++ ++ + K+ WEI +A+ T+++ EDD IP
Sbjct: 60 RLSSEIEQGSVYIFSGNSGVQRSKPAYTPYKSNWEI--KASKTMEIKRVEDDLRIPNVVL 117
Query: 234 SFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLW 293
+ + + VDVIG V+ + + +G +RR+L L D SG S+++ LW
Sbjct: 118 KRTSVLDASKLSQETFVDVIGGVMWIGQKNISPKDSGAFMRRRMLCLSDESGHSIDMCLW 177
Query: 294 GDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELRE 353
EG ++++ + G P++ VK G+++D++GKSI + L ++P+ + LRE
Sbjct: 178 DSKAEDEGSEIEDKLGRGERPIVCVKGGRISDYNGKSISVTGGSTLLVDPELEDVSRLRE 237
Query: 354 W----FDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITF 409
W +D+ T S S+ + +G K VS++ + L SE V +
Sbjct: 238 WMVASYDTTSFVHVTNSSSKAVISG------TKAVSEMLSINLKVSEFSAIFRVIVSVKE 291
Query: 410 IKSDSFCYTACPLMIGDRQCNKKVTQ-SGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGL 468
I++ F Y AC ++ RQC KKVTQ S + WQC+ C+ + + +Y L I D TG
Sbjct: 292 IQTGDFYYPACMKVVNGRQCGKKVTQVSESMWQCNSCDSDSGDIQLKYALHLCILDSTGH 351
Query: 469 TWVTAFQESGEEILGCPAKELYMLKYELQDDVRFG-----EIIRSRVFNQYLFRLKIKEE 523
W AF ++ EI+G PA +L LQDD G + IRS+++N +++ K E
Sbjct: 352 IWAVAFDDAANEIVGMPACKL----AALQDDDYTGFSAIMDSIRSKMYN---LKVRCKLE 404
Query: 524 LYGDEQRVKITVIRAD 539
Y D +++K ++ D
Sbjct: 405 SYRDTEKLKFFIVGLD 420
>gi|361128289|gb|EHL00233.1| putative Replication factor A protein 1 [Glarea lozoyensis 74030]
Length = 365
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 113/359 (31%), Positives = 195/359 (54%), Gaps = 16/359 (4%)
Query: 197 AQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIV 256
A+K F+++ N++E+ + + V+ C +++D +P+ +++F +I ++ E +S +DVIG++
Sbjct: 16 AKKQFSNINNDYELAFDKDTIVEKCEDQND-VPQVRYNFTNIGALQEVEKDSTIDVIGVL 74
Query: 257 ISVNPSVPILRKNGME-TQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPV 315
VN I+ K + +R L L D SG SV++T+WG K D +
Sbjct: 75 KEVNDVNQIVSKTTQQPYDKRDLTLVDDSGYSVKMTIWG--------KTATKFDANPEQI 126
Query: 316 LSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGG 375
++ K KV+DF+GKS+ + S + I+PD AEA++L+ W+DS G++ + + A G
Sbjct: 127 VAFKGAKVSDFNGKSLSLLSSGSMSIDPDIAEAYKLKGWYDSNGRSETFAAHTSTAGAAG 186
Query: 376 AKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQ 435
+N KTV+Q+K+E LG ++K D+ V+A I +IK D Y AC CNKKV +
Sbjct: 187 GRNNELKTVAQVKDENLGMNDKDDYFAVKATIVYIKQDPISYPAC----ASENCNKKVIE 242
Query: 436 SGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYE 495
W C CN + +R+++ + D TG +++ F + G I+G +L LK
Sbjct: 243 DNGYWTCASCNINHPKPQHRFIMTVNVSDHTGSFYLSCFDDVGRLIMGMNGDQLMELK-- 300
Query: 496 LQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLI 554
D+ + Y F + K + Y D+QRV+ V+RA +++ E+R L +LI
Sbjct: 301 ETDNEAVNKAFEDANCKTYTFTCRAKMDTYQDQQRVRYQVLRAAPIDFKQEARKLTELI 359
>gi|429966174|gb|ELA48171.1| replication factor-a protein 1 (rpa1) [Vavraia culicis
'floridensis']
Length = 612
Score = 199 bits (505), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 138/440 (31%), Positives = 221/440 (50%), Gaps = 44/440 (10%)
Query: 117 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDR 176
PIAALNP+Q +W +K V K +LR + + DGK FSF+LLD G I+ FN D
Sbjct: 213 PIAALNPFQTKWIVKGTVQKKSELREFK--KKDGKFFSFELLDKTGN-IKCVAFNDGADL 269
Query: 177 FYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFR 236
F+ I+ G V ISK +K K F + +++EI LE S V L EE ++ F
Sbjct: 270 FHGIVAEGSVVEISKAVVKMCNKKFANTSSDYEIHLEKNSVVSLVNEEGLAMS---FDLC 326
Query: 237 HISEIESAENNSIVDVIGIVISVNP-SVPILRKNGMETQRRILNLKDTSGRSVELTLWGD 295
IS++ N + DVIG+V P SV + + + E ++R L L D +G +V TLWGD
Sbjct: 327 KISDLVGRVNKANCDVIGVVHEAFPVSVVLAKASQREIKKRDLILVDQTG-TVRATLWGD 385
Query: 296 FCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSI-GTIPSTQLFINPDFAEAHELREW 354
+ +++ PVL +K +V +F+ + T + + ++P+ EA+ LR W
Sbjct: 386 ---------KSEIELDEHPVLLLKDVRVGEFNNAVVLSTAFGSAVKVDPEMDEAYSLRGW 436
Query: 355 FDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDS 414
+D ++ +V + R +NE + + +I++ G T A + FI+ D+
Sbjct: 437 YD---EHKQSVVVERP-----QRNE-YTFIEEIQSYG----------TCAATVLFIREDN 477
Query: 415 FCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAF 474
Y AC CNKKV+ + + C+RCNQ + C RYL + D T W+ F
Sbjct: 478 LFYNACA-----NNCNKKVSLTDEGYYCERCNQTKETCSIRYLTTLHVADFTQQVWLNVF 532
Query: 475 QESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKIT 534
+ E G A EL + E + + +++ ++ +Y+ R+K EE+Y E RV+
Sbjct: 533 DDFCTEFFGMTAYELKKMGEE--NATQLQNYLKTLLYKEYVIRMKRSEEVYNGEMRVRWR 590
Query: 535 VIRADQVNYSSESRYLLDLI 554
+ ++NY ES +L L+
Sbjct: 591 GLSIKKINYLDESVRMLRLM 610
>gi|221507849|gb|EEE33436.1| replication factor, putative [Toxoplasma gondii VEG]
Length = 458
Score = 199 bits (505), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 149/462 (32%), Positives = 237/462 (51%), Gaps = 35/462 (7%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
IP+ L Y +W I+ARV KGD+R+YN ARG G++F+ +L D DG EIR T FNA V
Sbjct: 6 FIPLKDLTAYVAKWTIRARVDVKGDIRKYNGARGPGQLFNVELKDKDG-EIRATFFNAAV 64
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEI-FLEATSTVDLCTEEDDSIPK-QQ 232
D++Y I++ G+VY GS+KP FNH ++++E+ F E +S V+ E IP +
Sbjct: 65 DKWYNILQEGKVYYFRGGSVKPKNPRFNHTRHDYELTFDEKSSIVE--AESGADIPSISR 122
Query: 233 FSFRHISEIESAENNSIVDVIGIVISVNPSVPI-LRKNGMETQRRILNLKDTSGRSVELT 291
I IE E NS V +I IV P I ++ G + +R + L D GRS+ LT
Sbjct: 123 ADLVDIRGIEEKEVNSTVSLIAIVHDYRPIQSITIKSTGQQKPKRDVFLVDEGGRSLVLT 182
Query: 292 LWGDFCNK--EGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAH 349
LWG+ E Q Q+ P++ +KS KV D++G+ + + ST++ + PD A
Sbjct: 183 LWGEKTETLPEEQLCQK-------PLVLLKSVKVGDWNGRKLDSQGSTRVELFPDGNRAA 235
Query: 350 ELREWFD-SGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGR-----SEKPDWVTV 403
E+++W++ G + + S+S A G K EI K++ Q+ E S+K + T
Sbjct: 236 EVQDWWNQEGSRRGSFASLSGGGLAVGRK-EILKSLEQVAQEAAQAEAAVLSDKGVYATS 294
Query: 404 RAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNR-WQCDRCNQEIDECDYRYLLQAQI 462
A + I D F + ACP C KK+ + R WQC C ++ ++ ++ Y+L +
Sbjct: 295 CALLERIGDDRFSWPACP------DCRKKMNEEMPRCWQCPSCRKQCEQPNHTYMLNLSL 348
Query: 463 QDQTGLTWVTAFQESGEEILGCPAKELYMLKYE---LQDDVR-FGEIIRSRVFNQYLFRL 518
D TG + E EE + E +L E L + R F +I +++FR+
Sbjct: 349 MDLTGSLRCSCIGEKAEEFMANTKAETVLLLAEHRALDEQGRSFQDIFADANLEEWIFRI 408
Query: 519 KIKEELYGDEQRVKITVIRADQV--NYSSESRYLLDLISKSF 558
K + + DE +K V+ A + ++++ LD + +F
Sbjct: 409 CSKYDSWMDEVSIKQRVVAAAPLFRRVGEQTQHRLDFVRTAF 450
>gi|68077039|ref|XP_680439.1| replication factor a protein [Plasmodium berghei strain ANKA]
gi|56501369|emb|CAI04746.1| replication factor a protein, putative [Plasmodium berghei]
Length = 1169
Score = 199 bits (505), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 140/449 (31%), Positives = 232/449 (51%), Gaps = 38/449 (8%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
++PI L+ Y +W IKARV +K ++R++ +GKVF+ +L D + GEI+V F V
Sbjct: 707 LMPINKLSQYSTKWIIKARVQSKDNIRKFYTGNKEGKVFNIELCD-ESGEIKVNVFGKAV 765
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
D++Y+ +EVG++Y ISKG++K A K FN LK++ EI L+ S ++L E D +IPK ++
Sbjct: 766 DKWYDYLEVGKIYKISKGNIKSANKKFNTLKHDCEITLDENSILELLEENDMNIPKYIYN 825
Query: 235 FRHISEIESAENN-SIVDVIGIVISVNPSVPIL-RKNGMETQRRILNLKDTSGRSVELTL 292
F I+EI++ N ++VDVIG+V+S IL +K G +++ L L D + ++ +TL
Sbjct: 826 FYPINEIKANLNTGTLVDVIGVVLSFQELNQILIKKTGQYKEKKDLMLIDETNETINVTL 885
Query: 293 WGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELR 352
WG+ K++EM ++ ++ K KV ++ GK + + P T++ INP+ +A+ L+
Sbjct: 886 WGE----NAVKMEEM-NITENCIICFKCLKVGEWQGKKLESHPKTKVEINPELDKAYTLK 940
Query: 353 EWFDSGGKNAATVSISREIAAGGA--KNEIHKTVSQI-KNEGLGRSE----KPDWVTVRA 405
W+ + KN + E KT+ +I KN L E K T
Sbjct: 941 NWWINNKKNVYNTINLTTTTSNNNMLNLESQKTIQEIKKNVNLANEEVLSGKGIIFTTFG 1000
Query: 406 FITFIKSDSFCYTACPLMIGDRQCNKKVTQS-------------GNRWQCDRCNQEIDEC 452
FI I + Y+ACP CNKK+ + C +CN+
Sbjct: 1001 FIDHIYNAIPVYSACP------NCNKKMVATVIEDGEEDMDQNVSESMYCAKCNKNNIPV 1054
Query: 453 DYRYLLQAQIQDQTGLTWVTAFQESGEEIL-GCPAKELYMLKYEL--QDDVRFGEIIRSR 509
Y Y + +I D T V+AF S + I+ G A+E L+ E Q+++ ++I
Sbjct: 1055 -YNYSINLKITDNTDSLRVSAFANSAKTIMNGLSAEEFMKLRQEYISQENIENFDLIEKA 1113
Query: 510 VFNQYLFRLKIKEELYGDEQRVKITVIRA 538
N++ FR+K + DE + T++
Sbjct: 1114 KLNEFFFRIKAYMTSHMDEIKKNYTILET 1142
>gi|403221677|dbj|BAM39809.1| replication factor-A protein 1 [Theileria orientalis strain
Shintoku]
Length = 659
Score = 198 bits (504), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 148/469 (31%), Positives = 237/469 (50%), Gaps = 49/469 (10%)
Query: 83 VRSFQPTVQPPYQPPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRR 142
VRS + T+ PY+PP N + K E P I+ L Y +W I+ARV K D+R+
Sbjct: 162 VRSVK-TISNPYEPPKNVKK-----KLEIPP--TKISDLTLYTPKWLIRARVAYKSDIRK 213
Query: 143 YNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFN 202
+NN RG+ ++FS DL DS+G EIR T F V+++Y +E G+VY IS G LKPA K FN
Sbjct: 214 FNNQRGESQLFSVDLCDSNG-EIRATFFGESVNKWYTFLEEGQVYSISGGQLKPANKKFN 272
Query: 203 HLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPS 262
L++ E+ L+ + L + DD+IP FSF + +I++ + +DVIG+V++
Sbjct: 273 SLRHSCELVLDEHCHIQLF-QNDDTIPSFCFSFTPLDQIQNLKVGEQIDVIGVVVTAKDL 331
Query: 263 VPI-LRKNGMETQRRILNLKDTSGRSVELTLWG----DFCNKEGQKLQEMVDVGFFPVLS 317
+ ++ G ++R + D++ S+ LT WG +F N EG P++
Sbjct: 332 QTVQVKSTGKALEKRDFLICDSTKSSIWLTSWGPKIRNF-NYEGPDSH--------PLVC 382
Query: 318 VKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAK 377
+K KV ++ GK + + STQ+ P EA ELR+W++ +N+ T++ E + G +
Sbjct: 383 LKGVKVIEWQGKKLDVMGSTQVIFEPVIQEALELRKWWN---ENSHTLNFGTETSRGSSS 439
Query: 378 NEIHKTVS-----QIKNEGLG-RSEKPDWV--TVRAFITFIKSDSFCYTACPLMIGDRQC 429
++ S N+ L +S + + T RA I +K +F + +CP C
Sbjct: 440 KVFNQMSSLAEIISATNQALQFKSIDSNGMIFTTRALIEVLKDGTFSWPSCP------GC 493
Query: 430 NKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEE---ILGCPA 486
K++ + + W C RC + Y+L +I D+T WVTA + GE+ I+G A
Sbjct: 494 RKRM-NNDDGWYCPRCENR-GTPTHMYMLTLKIVDETSHMWVTAMTDVGEDVQSIMGTKA 551
Query: 487 KELYMLKYELQDD---VRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVK 532
L L D F +Y+F++K E + DE R+K
Sbjct: 552 YNLVKLMENGGTDETGKNFANYFEEVRLTEYVFKIKATVENFMDEPRLK 600
>gi|237839391|ref|XP_002368993.1| hypothetical protein TGME49_036080 [Toxoplasma gondii ME49]
gi|211966657|gb|EEB01853.1| hypothetical protein TGME49_036080 [Toxoplasma gondii ME49]
gi|221483366|gb|EEE21685.1| replication factor, putative [Toxoplasma gondii GT1]
Length = 458
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 148/462 (32%), Positives = 237/462 (51%), Gaps = 35/462 (7%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
IP+ L Y +W I+ARV KGD+R+YN ARG G++F+ +L D DG EIR T FNA V
Sbjct: 6 FIPLKDLTAYVAKWTIRARVDVKGDIRKYNGARGPGQLFNVELKDKDG-EIRATFFNAAV 64
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEI-FLEATSTVDLCTEEDDSIPK-QQ 232
D++Y I++ G+VY GS+KP FNH ++++E+ F E +S V+ E IP +
Sbjct: 65 DKWYNILQEGKVYYFRGGSVKPKNPRFNHTRHDYELTFDEKSSIVE--AESGADIPSISR 122
Query: 233 FSFRHISEIESAENNSIVDVIGIVISVNPSVPI-LRKNGMETQRRILNLKDTSGRSVELT 291
I IE E NS V +I IV P I ++ G + +R + L D GRS+ LT
Sbjct: 123 ADLVDIRGIEEKEVNSTVSLIAIVHDYRPIQSITIKSTGQQKPKRDVFLVDEGGRSLVLT 182
Query: 292 LWGDFCNK--EGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAH 349
LWG+ E Q Q+ P++ +KS KV D++G+ + + +T++ + PD A
Sbjct: 183 LWGEKTETLPEEQLCQK-------PLVLLKSVKVGDWNGRKLDSQGNTRVELFPDGNRAA 235
Query: 350 ELREWFD-SGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGR-----SEKPDWVTV 403
E+++W++ G + + S+S A G K EI K++ Q+ E S+K + T
Sbjct: 236 EVQDWWNQEGSRRGSFASLSGGGLAVGRK-EILKSLEQVAQEAAQAEAAVLSDKGVYATS 294
Query: 404 RAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNR-WQCDRCNQEIDECDYRYLLQAQI 462
A + I D F + ACP C KK+ + R WQC C ++ ++ ++ Y+L +
Sbjct: 295 CALLERIGDDRFSWPACP------DCRKKMNEEMPRCWQCPSCRKQCEQPNHTYMLNLSL 348
Query: 463 QDQTGLTWVTAFQESGEEILGCPAKELYMLKYE---LQDDVR-FGEIIRSRVFNQYLFRL 518
D TG + E EE + E +L E L + R F +I +++FR+
Sbjct: 349 MDLTGSLRCSCIGEKAEEFMANTKAETVLLLAEHRALDEQGRSFQDIFADANLEEWIFRI 408
Query: 519 KIKEELYGDEQRVKITVIRADQV--NYSSESRYLLDLISKSF 558
K + + DE +K V+ A + ++++ LD + +F
Sbjct: 409 CSKYDSWMDEVSIKQRVVAAAPLFRRVGEQTQHRLDFVRTAF 450
>gi|312087571|ref|XP_003145524.1| replication factor A 73 kDa subunit [Loa loa]
Length = 607
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 148/521 (28%), Positives = 247/521 (47%), Gaps = 52/521 (9%)
Query: 55 SGTFNSQNPGSFSTPNSGTFRAPNAGSIVRSFQPTVQPPYQPPPNFRNHGPI-------- 106
S +S NP + N PNA R ++ P + N + P+
Sbjct: 116 SPVHHSGNPNDYRGLN------PNASMHTR---IELRSPQKGGLNLGQNAPVRYGGSSSR 166
Query: 107 -LKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEI 165
L N + + PI + PY +W I VTAK DLR AR D KVF+F+L D +GG I
Sbjct: 167 RLANLSGQNLTPIKLITPYVNKWRICGVVTAKEDLRNIRTARRDMKVFNFELTDEEGGCI 226
Query: 166 RVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTE-E 224
R+ F+ V ++FY II+ G ++ +S G++K A K FN +++EI + S V C + E
Sbjct: 227 RIAAFDDVAEKFYSIIQKGSMFYVSGGTVKQANKRFNTTGHDYEITIRNDSEVLPCLDRE 286
Query: 225 DDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKN-GMETQRRILNLKDT 283
PK S + + + I DVI I VN V + +N G + ++R + L D
Sbjct: 287 KIEQPKLSLSIVRLCNVANHVGEPI-DVIAIAEKVNDIVEVTARNTGAQLEKRDIILIDA 345
Query: 284 SGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGK-SIGTIPSTQLFIN 342
S + LT WG+ ++++ + +K V +++G S+ S+++ +N
Sbjct: 346 SETEITLTFWGEQARTYDKEIEGQ-------TIGIKGAFVKEYNGNLSLSIGNSSRIELN 398
Query: 343 PDFAEAHELREWFDSG-----GKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGR-SE 396
D AE L W+ +N T ++R+ + + + LGR SE
Sbjct: 399 MDCAETANLYRWYRETRPSVQARNLTTAGLTRDF----------RIIRLSEVGALGRDSE 448
Query: 397 KPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRY 456
K + V A I+ +K+D Y +C G C KKV + N+++C++C+ +D+ Y
Sbjct: 449 KGIFFNVTAMISSLKADGALYKSC----GTNGCKKKVIELNNQYRCEKCDITLDKYKYVL 504
Query: 457 LLQAQIQDQTGLTWVTAFQESGEEILGCPAKEL-YMLKYELQDDVRFGEIIRSRVFNQYL 515
L+ +I D +G WVT F++ ++L A++L +L +L D+ + E+ + F +Y
Sbjct: 505 LMTVEISDFSGSHWVTVFEDKAVKLLKNDAEQLGQLLDNDLLDE--YNEVFNAVRFREYT 562
Query: 516 FRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
FR++ K E Y E+++K V +VN L I+K
Sbjct: 563 FRIRAKSEFYNGEEKIKWNVFDIHEVNLDKYIDELTRAITK 603
>gi|393910914|gb|EFO18545.2| replication factor A 73 kDa subunit [Loa loa]
Length = 612
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 146/507 (28%), Positives = 243/507 (47%), Gaps = 47/507 (9%)
Query: 55 SGTFNSQNPGSFSTPNSGTFRAPNAGSIVRSFQPTVQPPYQPPPNFRNHGPI-------- 106
S +S NP + N PNA R ++ P + N + P+
Sbjct: 116 SPVHHSGNPNDYRGLN------PNASMHTR---IELRSPQKGGLNLGQNAPVRYGGSSSR 166
Query: 107 -LKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEI 165
L N + + PI + PY +W I VTAK DLR AR D KVF+F+L D +GG I
Sbjct: 167 RLANLSGQNLTPIKLITPYVNKWRICGVVTAKEDLRNIRTARRDMKVFNFELTDEEGGCI 226
Query: 166 RVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTE-E 224
R+ F+ V ++FY II+ G ++ +S G++K A K FN +++EI + S V C + E
Sbjct: 227 RIAAFDDVAEKFYSIIQKGSMFYVSGGTVKQANKRFNTTGHDYEITIRNDSEVLPCLDRE 286
Query: 225 DDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKN-GMETQRRILNLKDT 283
PK S + + + I DVI I VN V + +N G + ++R + L D
Sbjct: 287 KIEQPKLSLSIVRLCNVANHVGEPI-DVIAIAEKVNDIVEVTARNTGAQLEKRDIILIDA 345
Query: 284 SGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGK-SIGTIPSTQLFIN 342
S + LT WG+ ++++ + +K V +++G S+ S+++ +N
Sbjct: 346 SETEITLTFWGEQARTYDKEIEGQ-------TIGIKGAFVKEYNGSLSLSIGNSSRIELN 398
Query: 343 PDFAEAHELREWFDSG-----GKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGR-SE 396
D AE L W+ +N T +S + A + + + LGR SE
Sbjct: 399 MDCAETANLYRWYRETRPSVQARNLTTAGLSSDNYARD-----FRIIRLSEVGALGRDSE 453
Query: 397 KPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRY 456
K + V A I+ +K+D Y +C G C KKV + N+++C++C+ +D+ Y
Sbjct: 454 KGIFFNVTAMISSLKADGALYKSC----GTNGCKKKVIELNNQYRCEKCDITLDKYKYVL 509
Query: 457 LLQAQIQDQTGLTWVTAFQESGEEILGCPAKEL-YMLKYELQDDVRFGEIIRSRVFNQYL 515
L+ +I D +G WVT F++ ++L A++L +L +L D+ + E+ + F +Y
Sbjct: 510 LMTVEISDFSGSHWVTVFEDKAVKLLKNDAEQLGQLLDNDLLDE--YNEVFNAVRFREYT 567
Query: 516 FRLKIKEELYGDEQRVKITVIRADQVN 542
FR++ K E Y E+++K V +VN
Sbjct: 568 FRIRAKSEFYNGEEKIKWNVFDIHEVN 594
>gi|440491670|gb|ELQ74291.1| Single-stranded DNA-binding replication protein A
[Trachipleistophora hominis]
Length = 577
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 137/440 (31%), Positives = 220/440 (50%), Gaps = 44/440 (10%)
Query: 117 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDR 176
PIAALNP+Q +W +K V K ++R + + DGK FSF+LLD G I+ FN D
Sbjct: 178 PIAALNPFQTKWIVKGTVQKKSEMREFK--KKDGKFFSFELLDKTGN-IKCVAFNDGADL 234
Query: 177 FYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFR 236
FY +I G V ISK +K K F + +++EI LE S V L EE S+ +
Sbjct: 235 FYGMIVEGSVVEISKAVVKMCNKKFANTSSDYEIHLEKNSVVSLLNEEGLSMS---YDLC 291
Query: 237 HISEIESAENNSIVDVIGIVISVNP-SVPILRKNGMETQRRILNLKDTSGRSVELTLWGD 295
IS + N + DVIGIV P SV + + + E ++R L L D +G +V TLWGD
Sbjct: 292 KISNLAGRVNKANCDVIGIVHEAFPVSVVLAKASQREIKKRDLVLADETG-TVRATLWGD 350
Query: 296 FCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSI-GTIPSTQLFINPDFAEAHELREW 354
+ +++ PVL +K +V +F+ + T + + ++P+ EA+ LR W
Sbjct: 351 ---------KSEIELDDHPVLLLKDVRVGEFNNAVVLSTAFGSAVKVDPEMDEAYALRGW 401
Query: 355 FDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDS 414
+D ++ +V + R +N+ + + +I+ G T A + FI+ D+
Sbjct: 402 YD---EHKQSVVVERP-----QRND-YAFIEEIQGYG----------TCSATVLFIREDN 442
Query: 415 FCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAF 474
Y AC CNKKV+ + + C+RCNQ + C+ RYL + D T W+ F
Sbjct: 443 LFYNACA-----NNCNKKVSLTDEGYYCERCNQTREICNIRYLTTLHVADFTQQVWLNVF 497
Query: 475 QESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKIT 534
+ E G A EL + E + + +++ ++ +Y+ ++K EE+Y E RV+
Sbjct: 498 DDFCTEFFGMTAVELKKMGEE--NATQLQNYLKTLLYREYVIKMKRSEEVYNGEMRVRWR 555
Query: 535 VIRADQVNYSSESRYLLDLI 554
+ ++NY ES +L L+
Sbjct: 556 GLSIKKINYLDESVRMLRLM 575
>gi|389582205|dbj|GAB64760.1| replication factor a protein [Plasmodium cynomolgi strain B]
Length = 1187
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 140/447 (31%), Positives = 226/447 (50%), Gaps = 43/447 (9%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
++ I L+ Y +W IKARV +K ++RR+ + +GKVF+ +L D DG EI+ F V
Sbjct: 732 LMQINKLSQYSSKWIIKARVQSKDNVRRFYSGNKEGKVFNIELCDEDG-EIKANFFGKAV 790
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
D++Y+ ++VG++Y ISKG++K A K FN LK++ EI L+ S ++L EE+D+IPK ++
Sbjct: 791 DKWYDYLQVGKIYKISKGNVKAANKKFNTLKHDCEITLDENSIIELL-EENDNIPKFIYN 849
Query: 235 FRHISEIESAENNSIVDVIGIVISVNPSVPIL-RKNGMETQRRILNLKDTSGRSVELTLW 293
F I I++ S+VDVIG+V S ++ IL +K G ++R L L D S ++ +TLW
Sbjct: 850 FASIDTIKNMNTGSLVDVIGVVFSFQETMQILIKKTGQYKEKRDLILIDDSNETINVTLW 909
Query: 294 GDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELRE 353
G+ K E V + ++ K KV ++ GK + + P T++ +NP+ H L+
Sbjct: 910 GEHALK-----IEEVHLRDNSIICFKYLKVGEWQGKKLESHPKTKIDVNPEIERTHVLQT 964
Query: 354 WFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIK------NEGLGRSEKPDWVTVRAFI 407
W+ S +N + S + E+ KT+ +IK NE S K T FI
Sbjct: 965 WWSSNKQNLYS---SVNVNTNSFHIELQKTIEEIKKDVNLANED-ALSGKGIVFTTFGFI 1020
Query: 408 TFIKSDSFCYTACPLMIGDRQCNKKVTQS---------------GNRWQCDRCNQEIDEC 452
I + Y+ACP CNKK+ + C +CN+ +
Sbjct: 1021 DHIYNSIPVYSACP------DCNKKMITNVVEEEEDDINSSQMMDQSMYCAKCNKN-NTP 1073
Query: 453 DYRYLLQAQIQDQTGLTWVTAFQESGEEIL-GCPAKELYMLK--YELQDDVRFGEIIRSR 509
Y Y + +I D T +AF I+ G A E L+ Y Q+++ ++I
Sbjct: 1074 IYNYSINLKITDSTDSLRASAFAGCARTIMNGLSADEFMALRQEYVTQENIENFDLIEKV 1133
Query: 510 VFNQYLFRLKIKEELYGDEQRVKITVI 536
N++ FR+K + DE + T+I
Sbjct: 1134 KLNEFFFRIKAYMTSHMDELKKNYTII 1160
>gi|156094579|ref|XP_001613326.1| replication factor a protein [Plasmodium vivax Sal-1]
gi|148802200|gb|EDL43599.1| replication factor a protein, putative [Plasmodium vivax]
Length = 1141
Score = 195 bits (495), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 146/467 (31%), Positives = 230/467 (49%), Gaps = 45/467 (9%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
++ I L+ Y +W IKARV +K ++RR+ + +GKVF+ +L D DG EI+ F V
Sbjct: 686 LMQINKLSQYSSKWIIKARVQSKDNVRRFYSGNKEGKVFNIELCDEDG-EIKANFFGKAV 744
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
DR+Y+ ++VGR+Y ISKG++K A K FN LK++ EI L+ S ++L EE+D+IPK ++
Sbjct: 745 DRWYDYLQVGRIYKISKGNIKAANKKFNTLKHDCEITLDENSIIELL-EENDNIPKFIYN 803
Query: 235 FRHISEIESAENNSIVDVIGIVISVNPSVPIL-RKNGMETQRRILNLKDTSGRSVELTLW 293
F I I++ S+VDVIG+V S ++ IL +K G ++R L L D S ++ +TLW
Sbjct: 804 FASIDTIKNMNTGSLVDVIGVVFSFQETMQILIKKTGQYKEKRDLILIDDSNETINVTLW 863
Query: 294 GDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELRE 353
G+ K + + F L KV ++ GK + + P T++ +NP+ A+ L+
Sbjct: 864 GEHALKVEEDCLRDNSIICFKYL-----KVGEWQGKKLESHPKTKIDVNPEIDRAYVLQT 918
Query: 354 WFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIK------NEGLGRSEKPDWVTVRAFI 407
W+ S N + S + E+ KT+ +IK NE S K T FI
Sbjct: 919 WWSS---NKQNLYHSVNVNTSSFHIELQKTIEEIKKDVNLANED-ALSGKGIVFTTFGFI 974
Query: 408 TFIKSDSFCYTACPLMIGDRQCNKKVTQS---------------GNRWQCDRCNQEIDEC 452
I + Y+ACP CNKK+ + C +CN+
Sbjct: 975 DHIYNSIPVYSACP------DCNKKMITNVVEEEEDDISSSQMMDQSMYCAKCNKNNTPV 1028
Query: 453 DYRYLLQAQIQDQTGLTWVTAFQESGEEIL-GCPAKELYMLK--YELQDDVRFGEIIRSR 509
Y Y + +I D T +AF I+ G A E L+ Y Q+++ ++I
Sbjct: 1029 -YNYSINLKITDSTDSLRASAFAGCARTIMNGLSADEFMALRQEYVTQENIENFDLIEKA 1087
Query: 510 VFNQYLFRLKIKEELYGDEQRVKITVIRADQVN--YSSESRYLLDLI 554
N++ FR+K + DE + T+I +N RYL+ I
Sbjct: 1088 KLNEFFFRIKAYMTSHMDELKKNYTIIEIIPLNKLLVDNCRYLVRAI 1134
>gi|221052666|ref|XP_002261056.1| replication factor a related protein [Plasmodium knowlesi strain H]
gi|194247060|emb|CAQ38244.1| replication factor a related protein [Plasmodium knowlesi strain H]
Length = 1191
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 140/448 (31%), Positives = 227/448 (50%), Gaps = 45/448 (10%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
++ I L+ Y +W IKARV K +R+Y + +GKVF+ +L D DG EI+V F V
Sbjct: 713 LMHINKLSQYSSKWIIKARVQFKDVVRKYYSGNKEGKVFNIELCDEDG-EIKVNFFGKAV 771
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
D++Y+ +++G++Y ISKG +K A K F +K+++EI L+ S ++ EE+D+IPK ++
Sbjct: 772 DKWYDYLQLGKIYKISKGYIKAANKKFTTIKHDYEITLDENSIIE-ALEENDNIPKFIYN 830
Query: 235 FRHISEIESAENNSIVDVIGIVISVNPSVPIL-RKNGMETQRRILNLKDTSGRSVELTLW 293
F I I++ + S+VDVIG+V S S IL +K G ++R + L D S ++ +TLW
Sbjct: 831 FTSIENIKNLKVGSLVDVIGVVFSYQESTQILIKKTGQYKEKRDIILIDDSKETINVTLW 890
Query: 294 GDFC-NKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELR 352
GD N E L++ ++ K+ KV ++ G + + P T++ INP+ A L+
Sbjct: 891 GDHALNIEEGYLKDN------SIICFKNLKVGEWQGIKLESHPKTKIDINPEIDRAQMLQ 944
Query: 353 EWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIK------NEGLGRSEKPDWVTVRAF 406
W+ + +N + S I +G E+ KT+ +IK NE S K T F
Sbjct: 945 TWWRNNKQNLYS---SVNIGSGIFHMELQKTIEEIKKDVNLANED-ALSGKGIIFTTFGF 1000
Query: 407 ITFIKSDSFCYTACPLMIGDRQCNKKVTQS---------------GNRWQCDRCNQEIDE 451
I I + Y+ACP CNKK+ + C +CN+ +
Sbjct: 1001 IDHIYNSMPVYSACP------DCNKKMISNVVEEEEDDMNSPQMMDQSMYCSKCNKN-NT 1053
Query: 452 CDYRYLLQAQIQDQTGLTWVTAFQESGEEIL-GCPAKELYMLK--YELQDDVRFGEIIRS 508
Y Y + +I D T TAF I+ G A E L+ Y Q+++ ++I
Sbjct: 1054 PTYSYFINLKITDSTDSLRATAFAGCARTIMNGLSANEFMALRQEYVTQENIENFDLIEK 1113
Query: 509 RVFNQYLFRLKIKEELYGDEQRVKITVI 536
N++ FR+K + DE + K T++
Sbjct: 1114 AKLNEFFFRIKAYMTSHMDELKKKYTIV 1141
>gi|399216333|emb|CCF73021.1| unnamed protein product [Babesia microti strain RI]
Length = 676
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 131/438 (29%), Positives = 225/438 (51%), Gaps = 36/438 (8%)
Query: 118 IAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRF 177
I+ L+ Y +W I AR+ K D+R++N RG+ ++FS DL DS EI+ T F V+++
Sbjct: 234 ISELSLYTPKWTILARIMLKSDIRKFNTPRGESQLFSLDLCDS-TSEIKATLFGDAVNKW 292
Query: 178 YEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRH 237
+E E G+VY ISKG ++ A K FNHL + EI L+ + V ++D+SIP FSF
Sbjct: 293 FEFFEEGKVYSISKGQIRAANKKFNHLNHPCEIILDEHAIVQ-NVDDDNSIPSSVFSFTK 351
Query: 238 ISEIESAENNSIVDVIGIVISVNPSVPILRKN--GMETQRRILNLKDTSGRSVELTLWGD 295
+S I+ + S++DVIG+V + ++ L+K G ++R + + D SG S+ +TLW D
Sbjct: 352 LSNIDILDQGSLIDVIGVVCQ-HKNIQSLQKKSLGGVIEKRDIKIVDDSGSSIWVTLWHD 410
Query: 296 FCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWF 355
K ++D P++++K+ K+ D+ + + ST++ INP + L +W+
Sbjct: 411 ---KATSLTDSLLDTN--PIIALKNAKITDWQMRKLDVQSSTKVVINPQHPQTDLLCKWW 465
Query: 356 ----DSGGKNAATVSISREIAAGGAKNEIH------KTVSQIKNEGLGRSEKPDWVTVRA 405
KN T +I ++ GG + E+ K +QI + +S+ VR
Sbjct: 466 IEVTQFLTKNGKT-TIFNSVSIGGLEEEVESIDYLTKQATQIGQDANSQSKT---FNVRG 521
Query: 406 FITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNR---WQCDRCNQEIDECDYRYLLQAQI 462
I +K + + + ACP C KK+ Q W+C RCN E ++ Y+L +I
Sbjct: 522 VIEILKENIYSWPACP------GCRKKMLQEQPESPIWRCTRCNME-GSPNHTYMLNFKI 574
Query: 463 QDQTGLT-WVTAFQESGEEIL-GCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKI 520
D T + W +A GEEI+ G A+EL + + +++F++++
Sbjct: 575 VDTTQTSIWASAMGNVGEEIMGGVKAEELLAIASSEFNGKNLSNYFEDARLTEHIFKVRV 634
Query: 521 KEELYGDEQRVKITVIRA 538
+ + + E R+K V++
Sbjct: 635 QMDSFLGEFRIKYRVVKV 652
>gi|124505339|ref|XP_001351411.1| replication factor a protein, putative [Plasmodium falciparum 3D7]
gi|6562734|emb|CAB62873.1| replication factor a protein, putative [Plasmodium falciparum 3D7]
Length = 1145
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 135/445 (30%), Positives = 229/445 (51%), Gaps = 38/445 (8%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
++ I L+ Y +W IKARV +K ++RRY + +GKVF+ +L D DG EI+ F V
Sbjct: 683 LMQINKLSQYSSKWIIKARVQSKDNIRRYTSGSKEGKVFNIELCDEDG-EIKANFFGKAV 741
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
D++++ IEVG++Y ISKG +K A K FN L +++EI L+ S +++ EE+++IPK ++
Sbjct: 742 DKWFDFIEVGKIYKISKGMIKVANKKFNTLNHDYEITLDENSLIEILDEENENIPKYNYN 801
Query: 235 FRHISEIESAENNSIVDVIGIVISVNPSVPI-LRKNGMETQRRILNLKDTSGRSVELTLW 293
F I I++ S VD+I +V++ + I ++K G +R + L D S ++++TLW
Sbjct: 802 FISIDNIKNMNTGSFVDIIAVVLNYQEKMQIFVKKTGQYKDKRDVTLIDESFDTIQVTLW 861
Query: 294 GDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAE-AHELR 352
K + EM ++ ++ K K+ ++ GK + + T++ INPD E A+ L+
Sbjct: 862 E----KNATIIDEM-NLRDNCIVCFKYLKIGEWQGKKLESHARTKIEINPDNIEKAYILK 916
Query: 353 EWFDSGGK---NAATVSISR-EIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFIT 408
W+ K N+ +S + I EI K V+ + E L S K T FI
Sbjct: 917 NWWIHNKKMICNSINLSSNYINIETQKTIQEIKKNVNLVNEEAL--SGKGIMFTTYGFID 974
Query: 409 FIKSDSFCYTACPLMIGDRQCNKKVTQSG---NRWQ-----------CDRCNQEIDECDY 454
I ++ Y+ACP CNKK+ + N ++ C +CN+ Y
Sbjct: 975 QIYNNMPVYSACP------DCNKKMISNSVDDNEYEPSSNLLEETMYCAKCNKNNIPV-Y 1027
Query: 455 RYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYM---LKYELQDDVRFGEIIRSRVF 511
Y + +I D T +AF + I+ + E YM +Y +Q+++ +II
Sbjct: 1028 NYYINLKITDSTDSIRASAFANCAKIIMNGLSAEEYMKLRQEYIMQENIENFDIIEKIKL 1087
Query: 512 NQYLFRLKIKEELYGDEQRVKITVI 536
N++ FR+K+ + DE + T+I
Sbjct: 1088 NEFFFRIKVYMTSHMDELKKNYTII 1112
>gi|307103509|gb|EFN51768.1| hypothetical protein CHLNCDRAFT_59111, partial [Chlorella
variabilis]
Length = 736
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 128/476 (26%), Positives = 232/476 (48%), Gaps = 46/476 (9%)
Query: 88 PTVQPPYQPPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNAR 147
P + P P P G + + + PI+ALNPY WAIKA+V +KG R ++
Sbjct: 137 PCITPASHPTPPSAGWGQKMGSATKRPLQPISALNPYNNNWAIKAKVVSKGSKRSFSR-- 194
Query: 148 GDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNE 207
G VFS +++D G I T + D YE++E G+VY+ +G++KPA K ++ ++N+
Sbjct: 195 --GSVFSAEVVDEQGTTIEATFWREAADHAYELLEEGKVYIFGRGNVKPADKRYSRVRND 252
Query: 208 WEIFLEATSTVDLCTEE-DDSIPKQQFSFRHISEIES-AENNSIVDVIGIVISVNPSVPI 265
+ + + S ++ C ++ D S + F I ++ + + +VD++G+V+ V P +
Sbjct: 253 YALHFDTASELESCADDIDTSKMHVKMEFVPIEQLAAFVDKKMMVDIVGVVMDVKPLGSV 312
Query: 266 LRK-NGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVN 324
RK + +E RR + L D S ++V LT+WG+ G++++E+V PV+++ +
Sbjct: 313 KRKTDQVELSRRDITLVDQSLKTVVLTMWGNAAEAAGREIEELVQQA--PVVAITA---- 366
Query: 325 DFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIA-----AGGAKNE 379
+ ++ + + INPD EA LR+W+DS G+ AA + +A +G + +
Sbjct: 367 -----CLSSLQRSAVLINPDVPEAVALRQWYDSSGRGAAMSHVGEGLATALKHSGSSAGQ 421
Query: 380 IHKTVSQIKNEGLGRSE-KPDWVTVRAFITFIKSD-SFCYTA---------------CPL 422
++ + ++ KP + TV A + D + Y A CP
Sbjct: 422 ERASLELFRAAAPATTQDKPHYSTVTATFAMVNPDQALFYMANPENNRKASTTAPRLCPG 481
Query: 423 MIG--DRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEE 480
+G C V Q ++ C+ + RY+ A++ D +G V F E E+
Sbjct: 482 FMGLLCALCVLVVEQGPGQYFCEYDGTTLSSMVRRYIFNAKVMDVSGECSVQVFNEQAEQ 541
Query: 481 ILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVI 536
+L A EL L+ D +F E+++S ++ + RLK + + + E+ V+I I
Sbjct: 542 LLEMKADELAELRE--TDAKQFQEVLKSVLWKDNVLRLKAQAQCF--EEDVEIGFI 593
>gi|17533299|ref|NP_495606.1| Protein RPA-1 [Caenorhabditis elegans]
gi|2833300|sp|Q19537.1|RFA1_CAEEL RecName: Full=Probable replication factor A 73 kDa subunit;
AltName: Full=RP-A p73; AltName: Full=Replication factor
A protein 1; Short=RF-A protein 1
gi|351018137|emb|CCD62042.1| Protein RPA-1 [Caenorhabditis elegans]
Length = 655
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 137/461 (29%), Positives = 228/461 (49%), Gaps = 30/461 (6%)
Query: 96 PPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSF 155
PPP R + ++PIA + PY + I V+ K ++R + + KVF+F
Sbjct: 209 PPPARRTASNTERG-----VMPIAMVTPYVSNFKIHGMVSRKEEIRTF--PAKNTKVFNF 261
Query: 156 DLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEAT 215
++ DS+G IR T FN V + Y I Y +S GS+K A K FN+ +++EI L +
Sbjct: 262 EITDSNGDTIRCTAFNEVAESLYTTITENLSYYLSGGSVKQANKKFNNTGHDYEITLRSD 321
Query: 216 STVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNP-SVPILRKNGMETQ 274
S ++ E + PK + EI + ++DV+ +V ++P + K G
Sbjct: 322 SIIE-AGGELLAAPKLILKRVKLGEI-AGYAGQLIDVLVVVEKMDPEATEFTSKAGKSLI 379
Query: 275 RRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGK-SIGT 333
+R + L D SG V LTLWGD K +VD V++ K +F+G S+GT
Sbjct: 380 KREMELIDESGALVRLTLWGDEATK------ALVDDYVQKVIAFKGVIPREFNGGFSLGT 433
Query: 334 IPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLG 393
+T++ P+ A EL +W+ T + A G NE +T++ ++ G
Sbjct: 434 GSATRIISVPEIAGVSELYDWY---ANVKPTTEVKMMSQAAGGSNEAPRTIAGLQEMQFG 490
Query: 394 R-SEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDEC 452
+ S+K D+ TV+A IT + + Y C C KK+ ++C++CN+ +++
Sbjct: 491 KDSDKGDYATVKAMITRVNPTNALYRGC----ASEGCQKKLVGENGDYRCEKCNKNMNKF 546
Query: 453 DYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFN 512
+ Y++Q ++ D+TG +VTAF +S +I+G A EL L E D+ + I F
Sbjct: 547 KWLYMMQFELSDETGQVYVTAFGDSAAKIVGKSAAELGELHDESPDE--YNAIFERLQFV 604
Query: 513 QYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDL 553
++RL+ K + Y +E R K+TV D VN + +Y+ +L
Sbjct: 605 PKMWRLRCKMDSYNEEVRQKMTVYGVDDVN---QDKYIENL 642
>gi|403340896|gb|EJY69743.1| Replication protein A 70 kDa DNA-binding subunit, putative
[Oxytricha trifallax]
Length = 636
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 126/461 (27%), Positives = 224/461 (48%), Gaps = 38/461 (8%)
Query: 117 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDR 176
PI AL+ + W IKARV K + + + N++G+G + + +L+D G +I+ T F +R
Sbjct: 171 PIKALSTFNYDWRIKARVVKKHEKKLWKNSKGEGWIMNIELMDCFGTQIQATFFKDSAER 230
Query: 177 FYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFR 236
F +II+ G +YL S GS+K A + ++N++ + + + + + +D SI ++ F+F
Sbjct: 231 FDQIIKEGNIYLFSNGSVKLANHKYTQIRNDFTLVFDKNADI-VEVPDDLSIQEKGFNFL 289
Query: 237 HISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDF 296
I +I + E N I+D+IGI+ + P + K G ++R+L L D S ++L LWGD
Sbjct: 290 GIKDIMTVEKNKIIDIIGILHQIGPLQEVQTKAGHNKEKRMLTLADESEMIIQLCLWGDM 349
Query: 297 CNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFD 356
+ M + V+++K GKV D++GK + + ++ +LR W+D
Sbjct: 350 ----AHRFDMMDETCSNHVIAIKGGKVVDYAGKQLNIHEDAYIMLDIPHPRTEQLRAWYD 405
Query: 357 SGGKNAATVSI---SREIAAGGAKNEIHKTVSQI------------KNEGLGRSEKPD-- 399
+ +I A+N+ + V I +G ++ +
Sbjct: 406 NLQNKDVLKNIVVKKERTENNQAQNKQQENVRMIAEVLDYLNQASQDQSKMGFNQNNNGN 465
Query: 400 -----WVTVRAFITFI-KSDSFCYTACPLMIGDRQCNKKVTQSGNR--WQCDRCNQEIDE 451
WV + I+FI K D Y ACP + C KKV + + ++C+ CNQ
Sbjct: 466 VFAYFWVNCQ--ISFIKKDDKLYYLACP----EENCRKKVIEDTDSKTFRCESCNQSFQS 519
Query: 452 CDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVF 511
C Y+L A+I DQ+ +V ++E G +I+ P + + +K E Q++ + +I F
Sbjct: 520 CVPTYMLMARIIDQSDSIFVNFYREQGSQIMSVPPEVIRRIKEEEQEE-QLNDIFIDAQF 578
Query: 512 NQYLFRLKIKEELYG-DEQRVKITVIRADQVNYSSESRYLL 551
Y +K K+ YG D R + Q +Y +E++ +L
Sbjct: 579 KPYQILIKAKQSNYGQDSSRTSFFATKIQQFSYQTENKEIL 619
>gi|403364199|gb|EJY81856.1| Replication protein A 70 kDa DNAbinding subunit puta [Oxytricha
trifallax]
Length = 636
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 126/461 (27%), Positives = 224/461 (48%), Gaps = 38/461 (8%)
Query: 117 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDR 176
PI AL+ + W IKARV K + + + N++G+G + + +L+D G +I+ T F +R
Sbjct: 171 PIKALSTFNYDWRIKARVVKKHEKKLWKNSKGEGWIMNIELMDCFGTQIQATFFKDSAER 230
Query: 177 FYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFR 236
F +II+ G +YL S GS+K A + ++N++ + + + + + +D SI ++ F+F
Sbjct: 231 FDQIIKEGNIYLFSNGSVKLANHKYTQIRNDFTLVFDKNADI-VEVPDDLSIQEKGFNFL 289
Query: 237 HISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDF 296
I +I + E N I+D+IGI+ + P + K G ++R+L L D S ++L LWGD
Sbjct: 290 GIKDIMTVEKNKIIDIIGILHQIGPLQEVQTKAGHNKEKRMLTLADESEMIIQLCLWGDM 349
Query: 297 CNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFD 356
+ M + V+++K GKV D++GK + + ++ +LR W+D
Sbjct: 350 ----AHRFDMMDETCSNHVIAIKGGKVVDYAGKQLNIHEDAYIMLDIPHPRTEQLRAWYD 405
Query: 357 SGGKNAATVSI---SREIAAGGAKNEIHKTVSQI------------KNEGLGRSEKPD-- 399
+ +I A+N+ + V I +G ++ +
Sbjct: 406 NLQNKDVLKNIVVKKERTENNQAQNKQQENVRMIAEVLDYLNQASQDQSKMGFNQNNNGN 465
Query: 400 -----WVTVRAFITFI-KSDSFCYTACPLMIGDRQCNKKVTQSGNR--WQCDRCNQEIDE 451
WV + I+FI K D Y ACP + C KKV + + ++C+ CNQ
Sbjct: 466 VFAYFWVNCQ--ISFIKKDDKLYYLACP----EENCRKKVIEDTDSKTFRCESCNQSFQS 519
Query: 452 CDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVF 511
C Y+L A+I DQ+ +V ++E G +I+ P + + +K E Q++ + +I F
Sbjct: 520 CVPTYMLMARIIDQSDSIFVNFYREQGSQIMSVPPEVIRRIKEEEQEE-QLNDIFIDAQF 578
Query: 512 NQYLFRLKIKEELYG-DEQRVKITVIRADQVNYSSESRYLL 551
Y +K K+ YG D R + Q +Y +E++ +L
Sbjct: 579 KPYQILIKAKQSNYGQDSSRTSFFATKIQQFSYQTENKEIL 619
>gi|154288368|ref|XP_001544979.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150408620|gb|EDN04161.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 549
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 136/443 (30%), Positives = 217/443 (48%), Gaps = 68/443 (15%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
I PI AL+PY +W IKAR T K ++ ++N G+GK+FS +LLD D GEIR T F
Sbjct: 168 IYPIEALSPYSHKWTIKARCTNKSAIKTWHNKNGEGKLFSVNLLD-DSGEIRATAFKDQC 226
Query: 175 DRFYEIIEVGRVYLISK-GSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQF 233
D Y + E G VY IS ++ A+K FN+L NE+E+ E + V+ E++D +P+ +F
Sbjct: 227 DSLYSVFEEGCVYYISSPCRVQMAKKAFNNLNNEYELTFEKDTVVEKAEEQND-VPQIRF 285
Query: 234 SFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGME-TQRRILNLKDTSGRSVELTL 292
+F +I+ ++S E + +DVIG++ V IL K + +R L L D +G SV LT+
Sbjct: 286 NFTNIANLQSVEAGTTIDVIGVLKDVGELSQILSKTTSKPYDKRDLTLVDNTGYSVRLTV 345
Query: 293 WGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELR 352
WG+ KE + E V++ K KV+DF+G+S+ + S + ++ D +AH+L+
Sbjct: 346 WGNIA-KEFDSVPE-------SVVAFKGVKVSDFNGRSLSLLSSGSMTVDLDIEDAHKLK 397
Query: 353 EWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKS 412
G + + ++ +K V Q +N
Sbjct: 398 ------GCHCGLCQADTMAYSACLTDKCNKKVLQDEN----------------------- 428
Query: 413 DSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVT 472
G +C +RC+Q +YRY+L + D TG W++
Sbjct: 429 ------------GQWRC-------------ERCDQSFPHPEYRYILSVNVCDHTGALWLS 463
Query: 473 AFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVK 532
F E G+ ILG A EL LK D+ + E+++ + F + K + + D+QRV+
Sbjct: 464 CFDEVGKIILGTSANELMELKE--NDERAYEELVQRANCRSWNFNCRAKMDNFQDQQRVR 521
Query: 533 ITVIRADQVNYSSESRYLLDLIS 555
V ++YS ES L +LI+
Sbjct: 522 YQVSSVSAIDYSVESTRLAELIN 544
>gi|308502550|ref|XP_003113459.1| CRE-RPA-1 protein [Caenorhabditis remanei]
gi|308263418|gb|EFP07371.1| CRE-RPA-1 protein [Caenorhabditis remanei]
Length = 656
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 133/480 (27%), Positives = 240/480 (50%), Gaps = 30/480 (6%)
Query: 81 SIVRSFQPTVQPPYQPPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDL 140
S+ R P Q PP P + + IIPIA + PY + I V+ K D+
Sbjct: 193 SVNRMAAPEPQRVRPAPP------PARRGASNTGIIPIAMVTPYVNNFKIHGMVSRKEDI 246
Query: 141 RRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKN 200
R + + +VF+F++ D++G IR FN + F+ +I Y I+ GS++ A K
Sbjct: 247 RTF--PAKNTRVFNFEVTDTNGDTIRCCAFNEAAESFFGMITENLSYYIAGGSVRQANKR 304
Query: 201 FNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVN 260
+N+ +++EI L + S ++ E + PK +SE+ + ++DV+ +V ++
Sbjct: 305 YNNTGHDYEITLRSDSVIE-AGGELLAAPKLNLRRVRLSEV-AGHCGGLIDVLAVVDKMD 362
Query: 261 PS-VPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNK-EGQKLQEMVDVGFFPVLSV 318
+ G +R + L D S V LTLWG+ K + Q+ Q+ V V F V+
Sbjct: 363 DEPTEFTSRAGKTLVKREMELIDESSAMVRLTLWGEEATKADAQEYQQKV-VAFKGVIP- 420
Query: 319 KSGKVNDFSGK-SIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAK 377
+F+G ++GT T++ + PD +L +W+ + +A IS+ G
Sbjct: 421 -----KEFNGGYTLGTGSGTRIILAPDIGGVADLYDWYHNTKPSAEVKMISQ---TSGGS 472
Query: 378 NEIHKTVSQIKNEGLGR-SEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQS 436
N+I +T++ ++ G+ SEK D+ +V+A IT I ++ Y C C KKV ++
Sbjct: 473 NDIPRTIAGLQEMQFGKDSEKGDYASVKAMITRINPNNALYKGC----ASEGCQKKVVET 528
Query: 437 GNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYEL 496
++C++CN+ +++ + Y++Q ++ D+TG +VTAF ++ +++G A E+ LK E
Sbjct: 529 DGEYRCEKCNKSMNKFKWLYMMQFELSDETGQVYVTAFGDTAAKVVGKTAAEIGDLKEEN 588
Query: 497 QDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
++ + + F +++L+ K E Y +E R K+TV D+VN L LI +
Sbjct: 589 PEE--YNGVFERIQFAPKMWKLRCKMETYNEETRQKMTVFGVDEVNQDKYIENLKQLIEQ 646
>gi|326484265|gb|EGE08275.1| replication factor A 1 [Trichophyton equinum CBS 127.97]
Length = 538
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 114/369 (30%), Positives = 201/369 (54%), Gaps = 20/369 (5%)
Query: 191 KGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIV 250
K LK A+K F+++ N++E+ + + V+ +++D +P+ +F+F + ++S + + +
Sbjct: 182 KARLKMAKKEFSNVNNDYELTFDRDTVVEKAEDQND-VPQIRFNFTSLGNLQSIDKGTTI 240
Query: 251 DVIGIVISVNPSVPILRKN-GMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVD 309
DV+GI+ V+ + + K G +R L L D SG SV LT+WG+ D
Sbjct: 241 DVLGILKDVDATSQVTSKTTGKPYDKRELTLVDNSGFSVRLTVWGNTATN--------FD 292
Query: 310 VGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGK-NAATVSIS 368
V++ K KV+DF G+++ + S + ++PD EAH L+ W+D+ GK N+ T S
Sbjct: 293 TPPESVVAFKGVKVSDFGGRTLSLLSSGTVTVDPDIEEAHRLKGWYDAQGKSNSFTAYSS 352
Query: 369 REIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQ 428
GG KT+S+I++E + ++ + +++A + +K D+ CY ACP +
Sbjct: 353 DTTGGGGGSWPTFKTISEIRDEEIPSADSFESFSLKATVIHVK-DNLCYPACP----NEA 407
Query: 429 C-NKKVTQSG-NRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPA 486
C NKKVT+ ++W C+RC + YRY+L D TG W++ F E+G+ I G A
Sbjct: 408 CKNKKVTRGDLDQWHCERCERSYANPKYRYILSLNACDHTGQIWLSCFDEAGQMIFGMTA 467
Query: 487 KELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSE 546
EL +K + DD EI + + + F+ + K + Y ++QR + VI A ++Y++E
Sbjct: 468 DELMKIKED--DDAAANEITKGATYCTWNFKCRAKLDTYQEQQRTRYNVIAATPIDYATE 525
Query: 547 SRYLLDLIS 555
+ L LI+
Sbjct: 526 ADQLSKLIA 534
>gi|268530894|ref|XP_002630573.1| C. briggsae CBR-RPA-1 protein [Caenorhabditis briggsae]
gi|74961121|sp|O97472.1|RFA1_CAEBR RecName: Full=Probable replication factor A 73 kDa subunit;
AltName: Full=RP-A p73; AltName: Full=Replication factor
A protein 1; Short=RF-A protein 1
gi|4028997|emb|CAA10310.1| F18A1.5 protein [Caenorhabditis briggsae]
gi|4033360|emb|CAA10466.1| F18A1.5 protein [Caenorhabditis briggsae]
Length = 658
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 143/506 (28%), Positives = 243/506 (48%), Gaps = 45/506 (8%)
Query: 77 PNAGSIVRSFQPTVQ-PPYQPPPNFRNHGPILKNEAPA---------------------- 113
P A SI FQ + PP P + G N PA
Sbjct: 162 PEAESITSEFQENMSNPPAAKMPKRESGGEASHNRVPAPEPHRSRAPPPPARRGPSNTER 221
Query: 114 RIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAV 173
+IPIA + PY + I V+ K D++ N + K+F+F++ DS+G IR T FN
Sbjct: 222 GVIPIAMVTPYVNNFRIHGMVSRKEDIK--NIPAKNMKIFNFEITDSNGDTIRCTAFNET 279
Query: 174 VDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQF 233
+ F+ I Y +S GS++ A K FN+ +++EI L S V+ E + PK
Sbjct: 280 AESFHSTITENLSYYLSGGSVRQANKKFNNTGHDYEITLRNDSVVE-AGGELLAAPKLNL 338
Query: 234 SFRHISEIESAENNSIVDVIGIVISVNP-SVPILRKNGMETQRRILNLKDTSGRSVELTL 292
++EI + ++DV+ IV ++ + K G +R + L D S V LTL
Sbjct: 339 KRVSLAEI-AGHCGEMIDVLVIVEKMDAEATEFTSKAGKTLTKREMELIDESQALVRLTL 397
Query: 293 WGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGK-SIGTIPSTQLFINPDFAEAHEL 351
WGD + ++ VD V++ K +F+G S+GT T++ P+ + EL
Sbjct: 398 WGD------EAIKANVDDYHGKVIAFKGVIPREFNGGYSLGTGSGTRIIPVPEISGVSEL 451
Query: 352 REWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGR-SEKPDWVTVRAFITFI 410
+W+ + ++ IS+ G +E +T++ ++ G+ S+K D+ +V+A IT I
Sbjct: 452 YDWYTTEKPHSELKLISQ---TSGGMSEAPRTIAGLQEMQFGKDSDKGDYASVKAMITRI 508
Query: 411 KSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTW 470
+S Y C C KKV +S ++C++CN+ +++ + Y++Q ++ D+TG +
Sbjct: 509 NPNSALYKGC----ASEGCQKKVIESDGEYRCEKCNKSMNKFKWLYMMQFELSDETGQVY 564
Query: 471 VTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQR 530
VTAF +S +++G A+E+ LK E ++ + F ++RL+ K E Y +E R
Sbjct: 565 VTAFGDSAAKVVGKTAQEVGDLKDENLNE--YNATFERLQFVPKMWRLRCKMETYNEEVR 622
Query: 531 VKITVIRADQVNYSSESRYLLDLISK 556
K+TV ++VN L +LI +
Sbjct: 623 QKMTVFSVEEVNQDKYIENLKELIEQ 648
>gi|114145419|ref|NP_001041308.1| replication protein A 70 kDa DNA-binding subunit [Rattus
norvegicus]
gi|33086646|gb|AAP92635.1| Cb1-727 [Rattus norvegicus]
Length = 680
Score = 185 bits (470), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 103/254 (40%), Positives = 158/254 (62%), Gaps = 14/254 (5%)
Query: 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
++++PIA+L PYQ +W I ARVT K +R ++N+RG+GK+FS +L+D + GEIR T FN
Sbjct: 169 SKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVD-ESGEIRATAFNE 227
Query: 173 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQ 232
VD+F+ +IEV +VY SKG+LK A K F+ +KN++E+ ++V C E+ +P Q
Sbjct: 228 QVDKFFPLIEVNKVYYFSKGTLKIANKQFSAVKNDYEMTFNNETSVLPC-EDGHHLPTVQ 286
Query: 233 FSFRHISEIESAENNSIVDVIGIVISVNPSVPI-LRKNGMETQRRILNLKDTSGRSVELT 291
F F I ++ES +S+VD+IGI S + I ++ N E +R + L D SG+ V T
Sbjct: 287 FDFTGIGDLESKSKDSLVDIIGICKSYEDATKITVKSNNREVAKRNICLMDMSGKVVTAT 346
Query: 292 LWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHEL 351
LWG+ +K Q PV+++K +V+DF G+S+ + S+ + +NPD EA++L
Sbjct: 347 LWGEDADKFDGSRQ--------PVMAIKGARVSDFGGRSLSVLSSSTVLVNPDIPEAYKL 398
Query: 352 REW---FDSGGKNA 362
R W F GG A
Sbjct: 399 RGWHYVFGDGGLKA 412
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 114/217 (52%), Gaps = 12/217 (5%)
Query: 350 ELREWFDSGGKNAATVSISREIAAG-GAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFIT 408
+L FDS G+ VSIS + G G N KT+ + K+E LG+ +K D+ + A +
Sbjct: 468 QLMWGFDSEGQALDGVSISDLRSGGTGGSNTNWKTLYEAKSENLGQGDKADYFSTVATVV 527
Query: 409 FIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTG 467
F++ ++ Y ACP + CNKKV Q ++C++C++E YR +L I D
Sbjct: 528 FLRKENCMYQACPT----QDCNKKVIDQQNGLYRCEKCDREFPNFKYRMILSVNIADFQE 583
Query: 468 LTWVTAFQESGEEILGCPAKELYMLKYEL------QDDVRFGEIIRSRVFNQYLFRLKIK 521
WVT FQES E ILG L LK ++ ++ F E+ ++ F + FR+++K
Sbjct: 584 NQWVTCFQESAEAILGQNTVYLGELKEKVGCVFVSMNEQAFEEVFQNANFRSFTFRIRVK 643
Query: 522 EELYGDEQRVKITVIRADQVNYSSESRYLLDLISKSF 558
E Y DE R+K TVI V+Y S+ L+ I K+
Sbjct: 644 LETYNDESRIKATVIDVKPVDYRDYSKRLIMNIRKNI 680
>gi|403361002|gb|EJY80197.1| Replication factor-A protein [Oxytricha trifallax]
Length = 701
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 128/477 (26%), Positives = 231/477 (48%), Gaps = 43/477 (9%)
Query: 106 ILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEI 165
IL + PI +LN + W IKARVT K DL+ + NA+ +G V + +L+D+ G I
Sbjct: 229 ILNMSGDIQYTPIKSLNAFLFDWKIKARVTKKCDLKTWKNAKSEGHVMNVELIDNLGTLI 288
Query: 166 RVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEED 225
T +N ++ E+++ VYL+S GS+K A K F +KN++ I + +S + E+D
Sbjct: 289 LATFYNDAALKYNEMLQENHVYLMSNGSVKIANKKFTSIKNDYCIVFDKSSDIKEV-EDD 347
Query: 226 DSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQ-RRILNLKDTS 284
+I +Q F+F I EI E + VD +G++ V KNG + +R L + D S
Sbjct: 348 SNIQQQGFNFVTIDEINDFEQSRTVDTVGVITQVGQLSSFQPKNGGAAKDKRSLQIADES 407
Query: 285 GRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGT-IPSTQLFINP 343
G ++ +TLWG +K ++ VL+++ KV+D+ GK++ + +Q+FI+
Sbjct: 408 GLAISMTLWGQNASK--------LEFKEGSVLAIRGAKVSDYGGKTLNSGHEHSQIFIDV 459
Query: 344 DFAEAHELREWFDSGGKNAATVSISREIAAGGAKNE-------IHKTVSQIKNEGLGR-- 394
D EL++W + ++ + A G ++E I + V + EG
Sbjct: 460 DHKRTRELKQWNANRNQDGLNSVSTIGGAQGNQQSEKLDNFRLISEVVKNVSEEGASHQP 519
Query: 395 -------SEKPDWVTVRAFITFIKSDS-FCYTACPLMIGDRQCNKKVTQSGNRWQCDRCN 446
K + + F++ +SD + Y +CP C +KV ++C+ CN
Sbjct: 520 TYNSMYAQPKAKFFKISGFVSHARSDDKYYYLSCP------DCRRKVVDELEGFRCENCN 573
Query: 447 QEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEII 506
+ Y++ + QD TG ++ +E G++I+G A+E K +L++ +
Sbjct: 574 KSFSRSFPTYIMTVKFQDATGDMYIQFARELGDQIMGMTAEEFKDAKEQLENPEEMKLFL 633
Query: 507 RSRV-FNQYLFRLKIKEELY-------GDEQRVKITVIRADQVNYSSESRYLLDLIS 555
++ + + +K + + Y GD QR+K T I+ +++ E+ LL +S
Sbjct: 634 SQQILYKAHSVVIKAQNDQYRSSTMMEGD-QRIKYTAIKVAPISFKEENNMLLKRLS 689
>gi|341897567|gb|EGT53502.1| hypothetical protein CAEBREN_14752 [Caenorhabditis brenneri]
Length = 658
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 133/462 (28%), Positives = 233/462 (50%), Gaps = 32/462 (6%)
Query: 96 PPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSF 155
PPP R GP + ++PIA + PY + I +T K ++R + + KVF+F
Sbjct: 209 PPPARR--GP---SNTERGVMPIAMITPYVNGFKINGTITRKEEIRSF--PAKNTKVFNF 261
Query: 156 DLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEAT 215
++ DS+G IR FN + + Y I Y IS G ++ A K FN+ +++EI L
Sbjct: 262 EITDSNGDTIRCVAFNELAESLYSTITENLSYFISNGQVRQANKRFNNTGHDYEINLRND 321
Query: 216 STVDLCTEEDDSIPKQQFSFRHISEIESAEN-NSIVDVIGIVISVNPS-VPILRKNGMET 273
S V+ D + + + IS E A + ++DV+ V ++P K G
Sbjct: 322 SIVEAG---GDVVAAPKLHLKRISLGEIAGHCGEMIDVLAYVEKMDPEPTEFTSKAGKTL 378
Query: 274 QRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGK-SIG 332
+R + L D SG V LTLWG+ +K L++ + V++ K +F+G S+G
Sbjct: 379 VKREMELIDESGAVVRLTLWGEEASK--APLEDYL----HKVVAFKGVIPREFNGGYSLG 432
Query: 333 TIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGL 392
T +++ P+ + EL EW+++ TV + G+ +E +T++ ++
Sbjct: 433 TGFGSRVIAVPEISGVAELYEWYNT---VKPTVDVKMISQTSGSSSEAPRTIAGLQEMQF 489
Query: 393 GR-SEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDE 451
G+ SEK D+V+V+A IT I ++ Y C C KKV +S ++C++CN+ +
Sbjct: 490 GKDSEKGDYVSVKAMITRINPNNALYKGC----SSEGCQKKVIESDGDFRCEKCNKTMRH 545
Query: 452 CDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVF 511
+ Y++Q ++ D+TG +VTAF ++ +++G A E+ LK D+ + + F
Sbjct: 546 FKWLYMMQFELSDETGQVYVTAFGDNATKVVGRTAAEVGELKEANPDE--YNAVFEKLQF 603
Query: 512 NQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDL 553
++RL+ K E Y +E R K+TV ++VN + +Y+ +L
Sbjct: 604 IPKMWRLRCKMETYNEEVRQKMTVFGVEEVN---QDKYIENL 642
>gi|384497733|gb|EIE88224.1| hypothetical protein RO3G_12935 [Rhizopus delemar RA 99-880]
Length = 409
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 144/243 (59%), Gaps = 11/243 (4%)
Query: 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
+ + PI +NPYQ RW IKARVT K +++++N++GDGK+FS + LD GEI+ T FN
Sbjct: 177 SSLTPIKNINPYQSRWTIKARVTLKSPIKQWHNSKGDGKLFSVNFLD-QSGEIKATAFND 235
Query: 173 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQ 232
VDR Y + E G VY +SK + A+K F+ L NE+E+ LEA + ++LC D +IP+
Sbjct: 236 QVDRLYNMFEEGNVYYLSKARVTMARKQFSTLDNEYELTLEAGTEIELC-PSDAAIPQMN 294
Query: 233 FSFRHISEIESAENNSIVDVIGIVISVNPSVPILRK-NGMETQRRILNLKDTSGRSVELT 291
F I +++S E + VD +G+VI + I+ K G T +R L + D SG+SV LT
Sbjct: 295 FKLVKIGDLDSVEKGATVDAMGVVIQDSGLNEIVTKATGKPTNKRELTIVDESGKSVRLT 354
Query: 292 LWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHEL 351
LW K E D P+++ + +V+DF+G+S+ + L NPD EA L
Sbjct: 355 LW--------DKTAEEFDSSDSPIVACRGLRVSDFNGRSLSLSSAGTLKKNPDIPEAQRL 406
Query: 352 REW 354
R+W
Sbjct: 407 RQW 409
>gi|403370207|gb|EJY84965.1| hypothetical protein OXYTRI_17183 [Oxytricha trifallax]
Length = 684
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 121/454 (26%), Positives = 225/454 (49%), Gaps = 38/454 (8%)
Query: 117 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDR 176
PI LN + W IKARV KG + + NA+G+G + + DL+D +G +I+ T F +
Sbjct: 240 PIRMLNNFTKDWKIKARVIQKGQKKEWRNAKGEGVLLNADLIDHEGTQIQATFFGEAAHK 299
Query: 177 FYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFR 236
+ +++ VYL S G +K A K F +KN+ + + + + ++D+ I Q FSF
Sbjct: 300 YDQMLHENHVYLFSNGQVKIANKKFTSIKNDHCLTFDQNAEISE-VQDDNQIKSQGFSFV 358
Query: 237 HISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDF 296
+ IE +DVIG++ ++ + I K+G RR + + D S + L+LWG+
Sbjct: 359 TLRNIEKVMAGQAIDVIGVITEISNTSSIPLKSGQNKDRRNITIADESEAKISLSLWGNL 418
Query: 297 CNK----EGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQL-FINPDFAEAHEL 351
C + EGQ V++VK+ +V+D+ GKS+ L ++NP +L
Sbjct: 419 CTQYSYEEGQ------------VMAVKNVRVSDYGGKSLNCGDDHSLIYLNPADKRTDQL 466
Query: 352 REWFDSGG--KNAATVSISREIAAGGAKNE---IHKTVSQIKNEGLGRSEK--PDWVTVR 404
+W +GG KN +S G+++ + + + +E R++K P + +
Sbjct: 467 MQWSQTGGAKKNLQNLSGGVGGGDSGSRDNYRLVREMSDTLLHENSDRNDKTAPQYFKLS 526
Query: 405 AFITFIKSDS---FCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYR--YLLQ 459
+I+ I D + CP +C KK + G+++ C++CN+ ++ R Y +
Sbjct: 527 GYISKILYDENRMMYFPGCP------ECKKKCSPQGDQYWCEKCNKALNHNQVRMTYTVT 580
Query: 460 AQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRF-GEIIRSRVFNQYLFRL 518
A+ D + +++ ES E I+G PA + ++ + + + F +++ + FN Y F +
Sbjct: 581 AKFDDLSDGIFISFMSESAEPIMGMPASDFSRIREDQSNSLEFIRDLLNEKSFNYYTFVV 640
Query: 519 KIKEELYG-DEQRVKITVIRADQVNYSSESRYLL 551
K + Y +E R K +R+ ++ + E++ LL
Sbjct: 641 KAALDDYNINEARFKYQAVRSQPLDMNEENQMLL 674
>gi|224139098|ref|XP_002326767.1| predicted protein [Populus trichocarpa]
gi|222834089|gb|EEE72566.1| predicted protein [Populus trichocarpa]
Length = 122
Score = 181 bits (459), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 81/121 (66%), Positives = 95/121 (78%)
Query: 100 FRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLD 159
+ N G + +NEAP RI+PI ALNPY GRW IKAR KG+LR YNN RGD KV S DLLD
Sbjct: 2 YSNRGSVARNEAPPRIVPITALNPYHGRWTIKARAMTKGELRHYNNTRGDSKVLSSDLLD 61
Query: 160 SDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVD 219
DGGEIR TC N V D+FY IE GR+YLISKG+LKPAQ+NFNHL+++ EIFLE+TST+
Sbjct: 62 CDGGEIRATCSNQVADQFYNQIEAGRIYLISKGNLKPAQRNFNHLRHDLEIFLESTSTIQ 121
Query: 220 L 220
L
Sbjct: 122 L 122
>gi|341899815|gb|EGT55750.1| CBN-RPA-1 protein [Caenorhabditis brenneri]
Length = 658
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 132/462 (28%), Positives = 233/462 (50%), Gaps = 32/462 (6%)
Query: 96 PPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSF 155
PPP R GP + ++PIA + PY + I +T K ++R + + KVF+F
Sbjct: 209 PPPARR--GP---SNTERGVMPIAMITPYVNGFKINGTITRKEEIRSF--PAKNTKVFNF 261
Query: 156 DLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEAT 215
++ DS+G IR FN + + Y I Y I+ G ++ A K FN+ +++EI L
Sbjct: 262 EITDSNGDTIRCVAFNELAESLYSTITENLSYFITNGQVRQANKRFNNTGHDYEINLRND 321
Query: 216 STVDLCTEEDDSIPKQQFSFRHISEIESAEN-NSIVDVIGIVISVNPS-VPILRKNGMET 273
S V+ D + + + IS E A + ++DV+ V ++P K G
Sbjct: 322 SIVEAG---GDVVAAPKLHLKRISLGEIAGHCGEMIDVLAYVEKMDPEPTEFTSKAGKTL 378
Query: 274 QRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGK-SIG 332
+R + L D SG V LTLWG+ +K L++ + V++ K +F+G S+G
Sbjct: 379 VKREMELIDESGAVVRLTLWGEEASK--APLEDYL----HKVVAFKGVIPREFNGGYSLG 432
Query: 333 TIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGL 392
T +++ P+ + EL EW+++ TV + G+ +E +T++ ++
Sbjct: 433 TGFGSRVIAVPEISGVAELYEWYNT---VKPTVDVKMISQTSGSSSEAPRTIAGLQEMQF 489
Query: 393 GR-SEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDE 451
G+ SEK D+V+V+A IT I ++ Y C C KKV +S ++C++CN+ +
Sbjct: 490 GKDSEKGDYVSVKAMITRINPNNALYKGC----SSEGCQKKVIESDGDFRCEKCNKTMRH 545
Query: 452 CDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVF 511
+ Y++Q ++ D+TG +VTAF ++ +++G A E+ LK D+ + + F
Sbjct: 546 FKWLYMMQFELSDETGQVYVTAFGDNATKVVGRTAAEVGELKEANPDE--YNAVFEKLQF 603
Query: 512 NQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDL 553
++RL+ K E Y +E R K+TV ++VN + +Y+ +L
Sbjct: 604 IPKMWRLRCKMETYNEEVRQKMTVFGVEEVN---QDKYIENL 642
>gi|302822669|ref|XP_002992991.1| hypothetical protein SELMODRAFT_431158 [Selaginella moellendorffii]
gi|300139191|gb|EFJ05937.1| hypothetical protein SELMODRAFT_431158 [Selaginella moellendorffii]
Length = 390
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 124/407 (30%), Positives = 203/407 (49%), Gaps = 31/407 (7%)
Query: 153 FSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLIS-KGSLKPAQKNFNHLKNEWEIF 211
SFD++D G EIR+ + + I G VY S G ++ + + + + WEI
Sbjct: 1 MSFDVVDVQGTEIRIIGSDDCALVLSDKIVQGTVYSFSGSGGIRRSNQAYTPFEVTWEI- 59
Query: 212 LEATSTVDLCT-EEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNG 270
+A ++ +ED + P+ + I E +S VDV+GIVI + R +G
Sbjct: 60 -QANKGMEFTALDEDATFPRIVLAKTSILSACQKERDSFVDVVGIVIWIGTITVTSRDSG 118
Query: 271 METQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKS 330
++R L L D SG SV+L LW +EG +QE +D G P++ VK GKV+D++GKS
Sbjct: 119 TFVKKRTLCLGDDSGHSVDLCLWDLKAEEEGSYIQERIDSGVQPIICVKGGKVSDYNGKS 178
Query: 331 IGTIPSTQLFINPDFAEAHELREW----FDSGGKNAATVSISREIAAGGAKNEIHKTVSQ 386
+ I + + I P+ +LREW ++ + S SR+ + T+S+
Sbjct: 179 LSAIGVSTILIEPEMEAVADLREWMTLYYNVTNFIHLSTSSSRQTVS------CTTTLSE 232
Query: 387 IKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCN 446
I N L E V A + +K+D F Y AC ++ RQC KK T++ + W C CN
Sbjct: 233 ISNMQLKVLESSPIYRVIATVKEMKTDEFYYNACINVLNARQCGKKTTRTADGWFCSYCN 292
Query: 447 QEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYE-------LQDD 499
E +++Y L+ I+D + W AFQE+ +EI+G AKEL ++ E L D
Sbjct: 293 IESANMEFKYALKMCIEDSSSHVWAIAFQEAAQEIVGMSAKELATMRDENYPAFSLLIDG 352
Query: 500 VRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVK-ITVIRADQVNYSS 545
IRS++ Y F++ K E Y D +++ + + + +++ ++S
Sbjct: 353 ------IRSKI---YKFKIWSKLEKYQDMEKLSYMELAKTNKIKHTS 390
>gi|403342085|gb|EJY70353.1| hypothetical protein OXYTRI_08899 [Oxytricha trifallax]
Length = 769
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 131/472 (27%), Positives = 225/472 (47%), Gaps = 49/472 (10%)
Query: 111 APARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCF 170
+ A I+PI ALN + W I+AR+ K D R+ N G + +++D I T F
Sbjct: 300 SEANIMPIKALNTFSRDWKIQARIVQKSDKRQTKNG---GSLLKMEIVDRYNTPIEATFF 356
Query: 171 NAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPK 230
N D F I VG+VY GS+K A K F +KN++ + E +S + + D SI +
Sbjct: 357 NDAADFFEHKIHVGKVYDFCDGSIKLANKKFTTVKNDFTLTFEKSSQITEVAD-DGSISQ 415
Query: 231 QQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVEL 290
+ F ++ IS+ E + +D+IG+V+ + I KN + QRR + + D S S+ L
Sbjct: 416 ETFEYQPISKCEDLTVGASIDLIGVVLDITSCDTIKLKNNRQKQRRYITIIDESFCSISL 475
Query: 291 TLWGD-FCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPS-TQLFINPDFAEA 348
T+WG+ FC Q M +VG +L++K G++++F GK+I + +NP
Sbjct: 476 TIWGEGFC-------QRMNEVGQGDILAMKGGRLSEFGGKTINVADDHASIMVNPSNPRG 528
Query: 349 HELREWF---DSGG-------KNAATVSISREIAAG-------------GAKNEIHKTVS 385
++ +W+ GG K+ + + SR A N I + S
Sbjct: 529 KKVYDWYIQQVQGGEESMKQIKHLSNLQSSRSDKAELNVVDQSNDKQRRNQLNFICEITS 588
Query: 386 QIKNEGLGRSEKPDWVTVRAFITFIKSDS-FCYTACPLMIGDRQCNKKVT----QSGNRW 440
+++E ++ + + +I+ IK+D Y ACP + C +KVT Q G +
Sbjct: 589 MLQDE--NDVDQQHFFFLNGYISLIKNDDKIFYIACP----NDNCRRKVTEEHQQQGQAY 642
Query: 441 QCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDV 500
+C+ CN+ C Y++QA+I D T ++ +++G ++G A+E + ++
Sbjct: 643 RCEACNKVYRTCQPTYMIQAKITDFTDTIYINFPRDNGTALMGMTAQEFKHFRDRATEE- 701
Query: 501 RFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVN-YSSESRYLL 551
S +F Q+ +K K E YG E R++ I+ + SE+R L+
Sbjct: 702 ELSAYFDSLLFKQFNIMVKGKFEFYGGENRMRFFAIKVFPIKEVMSENRALI 753
>gi|354507912|ref|XP_003515998.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like,
partial [Cricetulus griseus]
Length = 218
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/228 (40%), Positives = 142/228 (62%), Gaps = 11/228 (4%)
Query: 128 WAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVY 187
W I ARVT K +R ++N+RG+GK+FS +L+D + GEIR T FN VD+F+ +IEV +VY
Sbjct: 1 WTICARVTNKSQIRTWSNSRGEGKLFSIELVD-ESGEIRATAFNEQVDKFFPLIEVNKVY 59
Query: 188 LISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENN 247
SKG+LK A K F+ +KN++E+ ++V C E+ +P QF F IS++ES +
Sbjct: 60 YFSKGTLKIANKQFSAVKNDYEMTFNNETSVLPC-EDGHHLPTVQFDFTGISDLESKSKD 118
Query: 248 SIVDVIGIVISVNPSVPI-LRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQE 306
S+VD+IGI S S I ++ + E +R + L D SG+ V TLWG+ +K Q
Sbjct: 119 SLVDIIGICKSYEDSTKITVKSSNREVAKRNIYLMDMSGKVVTATLWGEDADKFDGSRQ- 177
Query: 307 MVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREW 354
PV+++K +V+DF G+S+ + S+ + +NPD EA++LR W
Sbjct: 178 -------PVMAIKGARVSDFGGRSLSVLSSSTIIVNPDIPEAYKLRGW 218
>gi|335748685|gb|AEH58815.1| replication protein A large subunit [Karenia brevis]
Length = 458
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 127/463 (27%), Positives = 215/463 (46%), Gaps = 29/463 (6%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYN--NARGDGKVFSFDLLDSDGGEIRVTCFNA 172
+PIA L+ Y+ +W IK RVT KG LR +N + GKVF +LLD++GGEIR + FN
Sbjct: 6 FMPIAELSTYRTKWTIKGRVTNKGPLRTFNKQGSATQGKVFHVELLDAEGGEIRASFFND 65
Query: 173 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQ 232
DR + ++E G+ + +SKG ++ A K +N + +E+ + + ++ T +D SI +
Sbjct: 66 AADRLFNVLEPGKCFTLSKGQIRVANKQYNPTSHRYELIFDREAIIEPAT-DDASINAIK 124
Query: 233 FSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTL 292
FSF ++ + S + +D+ G++ S K+G E +R + + D SG S+ +TL
Sbjct: 125 FSFTNLKAVASRQLPCSIDICGVITSFTAPASRTGKDGQELTKREIQVADDSGTSISVTL 184
Query: 293 WGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGT-IPSTQLFINPDFAEAHEL 351
WG +E + + P +++K V ++ G G+ + S L P EA +
Sbjct: 185 WGXRAKQEDKNFEGQ------PTVALKGVLVKEWQGGRQGSLLQSGTLQFKPAMPEAQRV 238
Query: 352 REWFDSGGKNAATVSISREIAAGG----AKNEIHKTVSQIKNEG---LGRSEKPDWVTVR 404
++W+ GG + +S+ GG ++N T++ ++ L + E + V
Sbjct: 239 QQWWSQGGSAQSFADLSQTTGGGGESARSRNAKPMTIAGMRAAAERLLDQVEIYNVVCRL 298
Query: 405 AFITFIKSDS---FCYTAC--PLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQ 459
A + K Y AC P CN++V SG C+R + R ++
Sbjct: 299 ALVQLRKQGEIQPLQYLACQEPKEGNGLPCNRRVDASGFCATCNRAGKTAP----RLTVR 354
Query: 460 AQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVR--FGEIIRSRVF-NQYLF 516
+ D W+T F E + IL E+ L+ ++ R IR R F +
Sbjct: 355 CRFVDCEDQAWLTTFHEPAQRILDMTGDEVRALELLEEEGGREKLEASIRQRYFATPFTV 414
Query: 517 RLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKSFR 559
++ K + Y E R IT I A V+ R LL I + +
Sbjct: 415 TVRAKMDSYNGEPRTNITAIEARPVSRGEHGRALLKEIQEMLK 457
>gi|67972174|dbj|BAE02429.1| unnamed protein product [Macaca fascicularis]
Length = 268
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 102/278 (36%), Positives = 156/278 (56%), Gaps = 16/278 (5%)
Query: 282 DTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFI 341
DTSG+ V TLWGD +K Q PVL++K +V+DF G+S+ + S+ +
Sbjct: 2 DTSGKVVTATLWGDDADKFDGSRQ--------PVLAIKGARVSDFGGRSLSVLSSSTIIA 53
Query: 342 NPDFAEAHELREWFDSGGKNAATVSISREIAAG-GAKNEIHKTVSQIKNEGLGRSEKPDW 400
NPD EA++LR WFD+ G+ VSIS + G G N KT+ ++K+E LG+ +KPD+
Sbjct: 54 NPDIPEAYKLRGWFDAEGQALDGVSISDLKSGGVGGGNTNWKTLYEVKSENLGQGDKPDY 113
Query: 401 VTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQ 459
+ A + +++ ++ Y ACP + CNKKV Q ++C++C+ E YR +L
Sbjct: 114 FSSVATVVYLRKENCMYQACPT----QDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILS 169
Query: 460 AQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLK 519
I D WVT FQES E ILG A L LK +++ F E+ ++ F ++FR++
Sbjct: 170 VNIADFQENQWVTCFQESAEAILGQNAAYLGELK--DKNEQAFEEVFQNANFRSFIFRVR 227
Query: 520 IKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKS 557
+K E Y DE R+K +V+ V+Y R L+ I +S
Sbjct: 228 VKVETYNDESRIKASVMDVKPVDYREYGRRLVLSIRRS 265
>gi|335748585|gb|AEH58813.1| replication protein A large subunit [Karenia brevis]
Length = 460
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 124/464 (26%), Positives = 229/464 (49%), Gaps = 34/464 (7%)
Query: 114 RIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAV 173
+ PI+ ++PY +W IKARVT+K +R + + GKVFS DLLD+ GGEIR T FN
Sbjct: 6 QFFPISEISPYHTKWTIKARVTSKAPVRTFG--KSGGKVFSVDLLDALGGEIRSTFFNQA 63
Query: 174 VDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQF 233
D+F ++++ G + SKG ++ A + + L + +E+ +A + ++ +E +I +F
Sbjct: 64 ADKFLDVLKPGACFTFSKGRVRIADRRYTALNHRYELIFDADAIIEPAKDE-GTIEALKF 122
Query: 234 SFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLW 293
+ + I+S VD+ G+V +V P + + K G E +R + + D + S+ +TLW
Sbjct: 123 NITSLRAIQSKTLPCGVDLCGVVTAVRPLMTVRNKEGQELLKRDITIADDTATSMTVTLW 182
Query: 294 GDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGT-IPSTQLFINPDFAEAHELR 352
+ +E + + +PV+ VK V +++G G+ + S L P F EA ++
Sbjct: 183 AERAKQEDRVFEG------YPVVGVKGVTVKEWNGGRGGSLLASGALVFKPTFEEAKRVQ 236
Query: 353 EWFDSGGKNAATVSISREIAAGGA---KNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITF 409
+W+ GG + + IS+ G +N T++ ++ +++P+ +V A +
Sbjct: 237 QWWSEGGSSQTLLDISQTTGGDGGGRNRNAAAATLAGVRQAADRLTDQPEIFSVAARLAI 296
Query: 410 IKSDS------FCYTAC--PLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQ 461
++ Y AC P CN++V SG C CN+ + R ++ +
Sbjct: 297 VQMRKQGEVQPLQYLACQEPRENSSLPCNRRVDSSGF---CSFCNRA-GKVAARLNIRCR 352
Query: 462 IQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGE--------IIRSRVFNQ 513
D W+T F E+ + +LG A+++ ++ D++ GE +R+R F +
Sbjct: 353 FVDFEDQAWMTTFHEAAQRVLGMSAEDVRAMEQGTGDEMADGEDRREKLEAAVRARYFEK 412
Query: 514 YL-FRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
L ++ K + Y E R ITV+ A ++ R +L I++
Sbjct: 413 PLSLVVRAKLDTYNGEVRPNITVVDARPISRGEHGRVMLKEINQ 456
>gi|302795292|ref|XP_002979409.1| hypothetical protein SELMODRAFT_419097 [Selaginella moellendorffii]
gi|300152657|gb|EFJ19298.1| hypothetical protein SELMODRAFT_419097 [Selaginella moellendorffii]
Length = 389
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 124/407 (30%), Positives = 204/407 (50%), Gaps = 32/407 (7%)
Query: 153 FSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLIS-KGSLKPAQKNFNHLKNEWEIF 211
SFD++D G EIR+ + + I G VY S G ++ + + + + WEI
Sbjct: 1 MSFDVVDVQGTEIRIIGSDDCALVLSDKIVQGIVYSFSGSGGIRRSNQAYTPFEVTWEI- 59
Query: 212 LEATSTVDLCT-EEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNG 270
+A ++ +ED + P+ + I E +S VDV+GIVI + R +G
Sbjct: 60 -QANKGMEFTALDEDATFPRIVLAKTSILSACQKERDSFVDVVGIVIWIGTITVTSRDSG 118
Query: 271 METQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKS 330
++R L L D SG SV+L LW +EG +QE +D G P++ VK GKV+D++GKS
Sbjct: 119 TFVKKRTLCLGDDSGHSVDLCLWDLKAEEEGSYIQERIDSGVQPIICVKGGKVSDYNGKS 178
Query: 331 IGTIPSTQLFINPDFAEAHELREW----FDSGGKNAATVSISREIAAGGAKNEIHKTVSQ 386
+ I + + I P+ +LREW ++ + S SR+ + T+S+
Sbjct: 179 LSAIGVSTILIEPEMEAVADLREWMTLYYNVTNFIHLSTSSSRQTVS------CTTTLSE 232
Query: 387 IKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCN 446
I N L E V A + +K+D F Y AC ++ RQC KK T++ + W C CN
Sbjct: 233 ISNMQLKVLESSPIYRVIATVKEMKTDEFYYNACINVVNARQCGKKTTRTADGWFCSYCN 292
Query: 447 QEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYE-------LQDD 499
E +++Y L+ I+D + + W AFQE+ +EI+G AKEL ++ E L D
Sbjct: 293 IESANMEFKYALKMCIEDSSHV-WAIAFQEAAQEIVGMSAKELATMRDENYPAFSLLIDG 351
Query: 500 VRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVK-ITVIRADQVNYSS 545
IRS++ Y F++ K E Y D +++ + + + +++ ++S
Sbjct: 352 ------IRSKI---YKFKIWSKLEKYQDMEKLSYMELAKTNKIKHTS 389
>gi|260793785|ref|XP_002591891.1| hypothetical protein BRAFLDRAFT_89408 [Branchiostoma floridae]
gi|229277103|gb|EEN47902.1| hypothetical protein BRAFLDRAFT_89408 [Branchiostoma floridae]
Length = 265
Score = 172 bits (435), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 95/272 (34%), Positives = 147/272 (54%), Gaps = 15/272 (5%)
Query: 284 SGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINP 343
SG+ V LTLWG +K D PV+++K +++DF G+S+ T+ S+ + INP
Sbjct: 2 SGKQVNLTLWGGEADK--------FDGSSSPVVAIKGARLSDFGGRSLSTVGSSTIMINP 53
Query: 344 DFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTV 403
D EA++LR W+D G NA SIS G + K+ Q+K+E LG EKPD+ T
Sbjct: 54 DIPEAYQLRGWYDKVGCNAEAQSISTGAGGGAGRPTNWKSFQQVKDENLGTGEKPDFFTT 113
Query: 404 RAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNR-WQCDRCNQEIDECDYRYLLQAQI 462
+ I F+K ++ Y ACP + CNKKV N + C++C++E YR +L A +
Sbjct: 114 KGTIVFLKKENSMYQACPT----QDCNKKVVDLQNGFFSCEKCSKEFPNFKYRMILSANV 169
Query: 463 QDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKE 522
D +G W T FQE+ E ILG + L LK QDD + ++ F Y+F +++K
Sbjct: 170 ADFSGNQWTTCFQETAETILGQNTEYLGNLKD--QDDTAYDQVFTEANFKSYIFNMRVKM 227
Query: 523 ELYGDEQRVKITVIRADQVNYSSESRYLLDLI 554
+ Y DE R++ +++ S+ L++ I
Sbjct: 228 DTYNDESRIRCICNGIQPLDFKEYSKKLINDI 259
>gi|123446475|ref|XP_001311988.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121893818|gb|EAX99058.1| hypothetical protein TVAG_433860 [Trichomonas vaginalis G3]
Length = 659
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 133/454 (29%), Positives = 227/454 (50%), Gaps = 35/454 (7%)
Query: 115 IIPIAALNPY-QGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAV 173
IIPI+AL Y W I+ R+ + D R Y N G+GK+ + + D G IR T FN
Sbjct: 227 IIPISALCQYTHPGWMIRVRIVSISDPRTYRN--GEGKLMNITMKDDSGTSIRGTFFNEN 284
Query: 174 VDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEI-FLEATSTVDLCTEEDDSIPKQQ 232
VDR+ +++ VY +S G +K A K +N+ N++EI F +ATS D ++D SI
Sbjct: 285 VDRWQPKLKLNNVYKVSGGRVKVANKEYNNTGNDYEISFDDATSIED--DQDDGSISTLS 342
Query: 233 FSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTL 292
F+F + ++ +N+ VD+IG V + + +V K G +R L + D + +ELT
Sbjct: 343 FNFVKLDQLAERPDNTTVDIIGWVTTSDQAVTFTSKKGNTMLKRRLEIADDTNSKIELTF 402
Query: 293 WGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELR 352
+G N KL E + VL+ +++ F GKS+ T+ L + P E + +R
Sbjct: 403 FGYLAN----KLPEEPNY----VLAAGPCRISPFRGKSL-TMFDGNLQVEPAIPETNAIR 453
Query: 353 EWFDSGGKN--AATVSISR-EIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITF 409
W++ G+ S+S ++ GG +H +S I +GLG++EK D+ A++T
Sbjct: 454 AWWNQTGQFTLGEMKSLSNGDVGMGGNSQTLH--LSAIDEQGLGQNEKGDYFM--AYVTL 509
Query: 410 IKSDS---FCYTACPLMIGDRQC-NKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQD 464
+ S FCY ACP + C NK +T + C++C Q+ +R++ +I D
Sbjct: 510 AELSSNKKFCYAACP----NEDCKNKGLTPNEDGTYFCEKC-QQPKTPRWRWMFNTKISD 564
Query: 465 QTGLTWVTAF--QESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKE 522
+G + + + G+ I G EL+ +++D+ + F RL +
Sbjct: 565 FSGSLYASVIGNDQVGDLIFGKKVNELHDELADVKDEETM-KFTMPLFFRNLKVRLNARL 623
Query: 523 ELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
+ YG E R+K+ ++ A ++NY+ +++ I K
Sbjct: 624 DNYGMESRIKVNIVGASEMNYAEAAKFFASEIEK 657
>gi|72168826|ref|XP_786722.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Strongylocentrotus purpuratus]
Length = 305
Score = 171 bits (434), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 98/297 (32%), Positives = 166/297 (55%), Gaps = 17/297 (5%)
Query: 251 DVIGIVISVNPSVPI-LRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVD 309
+VIG+ S + + ++ + E +R L L D S + V LTLWG K E D
Sbjct: 3 NVIGVCKSTSDLTAVTIKSSNREVNKRSLQLVDDSQKEVSLTLWG--------KEAEDFD 54
Query: 310 VGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGG--KNAATVSI 367
PV++VK +++ F G+S+ + ++ +NPD +AH L+ WFDS G +++ ++S
Sbjct: 55 GSGNPVIAVKGARLSGFGGRSLSVLQNSIFQVNPDIPKAHHLKGWFDSEGHSQDSQSIST 114
Query: 368 SREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDR 427
+ GG N T + + LG+ EKPD+ TV+ I F++ ++ Y ACP
Sbjct: 115 RQGSGGGGGANTNWMTFHDVHAQNLGQGEKPDYFTVKGTILFVRKENCMYMACP----SA 170
Query: 428 QCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPA 486
+CNKKV+++G+ ++C++C+++ + YR LL A + D T W T FQE+ E++L A
Sbjct: 171 ECNKKVSENGDGSYRCEKCSKDYENFKYRLLLSANVADSTDNQWATCFQETAEQLLLKSA 230
Query: 487 KELYMLKYELQ-DDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVN 542
+EL LK + + + F ++ + F Y+FR++IK E Y +E R+K T + A +N
Sbjct: 231 QELGSLKDQGEATEKEFNQVFQDACFIDYMFRMRIKMETYNEEARLKCTCVSAQPIN 287
>gi|403360589|gb|EJY79974.1| Replication protein A 70 kDa DNA-binding subunit [Oxytricha
trifallax]
Length = 733
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 113/400 (28%), Positives = 191/400 (47%), Gaps = 33/400 (8%)
Query: 114 RIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDG-----KVFSFDLLDSDGGEIRVT 168
+ PI+AL+ W IKAR+T K ++R+Y R +G K+ + DL+D G +I T
Sbjct: 215 QFTPISALSQNSQDWRIKARITKKYEMRQYTQTRRNGEKFPGKILNIDLIDGHGAQIMGT 274
Query: 169 CFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSI 228
FN RF I+ +VY IS G +K + + F +KNE+ + S +D+SI
Sbjct: 275 FFNDTATRFDSKIKENKVYTISGGQIKLSNQKFTAIKNEFCLIFTDHSEFKEAV-DDESI 333
Query: 229 PKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSV 288
FSF I +I++ N +D IGI P K+G + QR + L D S +++
Sbjct: 334 QSVAFSFVSIQDIKNMYGNKTIDFIGIAQYCQPVKEKQLKSGTKAQRTVY-LADESNQTI 392
Query: 289 ELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEA 348
L +WGD N+ + E PV++VK +++F G+S+ + +Q+ +NP
Sbjct: 393 ALCIWGDLANQFDLSIDE------HPVIAVKRANLSEFGGRSLNSNEDSQVIVNPSHPRT 446
Query: 349 HELREWFDSGGKNAATVSISREIAAGGAKNEI-------HKTVSQIKNEGLGRSEK---- 397
+L+ WF+ + SI+ + G E + + +I E L +K
Sbjct: 447 QQLKHWFNHLADPSQLSSITVQKEKGEFPEEKKSFNFDNQRFLGEIM-EALYSGDKSIVD 505
Query: 398 ---PDWVTVRAFITFIKSDSFC-YTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECD 453
+ V A+I +K+D Y ACP + C +KV + W+C C++ C
Sbjct: 506 QSLASYFYVSAYIWILKNDDRTYYLACP----NDDCKRKVIEESVGWRCQSCDRTYQTCI 561
Query: 454 YRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLK 493
Y+L A++ D + ++ +++ G I+G PA +L +K
Sbjct: 562 PTYMLSAKLADASDAQFINFYKQEGTLIMGLPADKLKEIK 601
>gi|302792122|ref|XP_002977827.1| hypothetical protein SELMODRAFT_417572 [Selaginella moellendorffii]
gi|300154530|gb|EFJ21165.1| hypothetical protein SELMODRAFT_417572 [Selaginella moellendorffii]
Length = 372
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 123/404 (30%), Positives = 196/404 (48%), Gaps = 50/404 (12%)
Query: 153 FSFDLLDSDGGEIRVT----CFNAVVDRFYEIIEVGRVYLIS-KGSLKPAQKNFNHLKNE 207
SFD++D G EIR+ C + D+ + G VY S G ++ + + + +
Sbjct: 1 MSFDVVDVQGTEIRIIGSDDCALVLSDKIVQ----GTVYSFSGSGGIRHSNQAYTPFEAT 56
Query: 208 WEIFLEATSTVDLCT-EEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPIL 266
WEI +A ++ +ED P+ + I E +S VDV+GIVI +
Sbjct: 57 WEI--QANKGMEFTALDEDAMFPRIVLAKTSILSACQKERDSFVDVVGIVIWIGTITVTS 114
Query: 267 RKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDF 326
R +G ++R L L D SG SV+L LW +EG +QE +D G P++ VK GKV+D+
Sbjct: 115 RDSGTFVKKRTLCLGDDSGHSVDLCLWDLKAEEEGSYIQERIDSGVQPIICVKGGKVSDY 174
Query: 327 SGKSIGTIPSTQLFINPDFAEAHELREW----FDSGGKNAATVSISREIAAGGAKNEIHK 382
+GKS+ I + + I + +LREW ++ + S SR+I +
Sbjct: 175 NGKSLSAIGVSTILIELEMEAVADLREWMTLYYNVTNFIHLSTSSSRQIVS------CTT 228
Query: 383 TVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQC 442
T+S+I N V A + +K+D F Y AC ++ RQC KK TQ+ + W C
Sbjct: 229 TLSEISN------------IVIATVKEMKTDEFYYNACINVVNARQCGKKTTQTADGWFC 276
Query: 443 DRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYE------- 495
CN +++Y L+ I+D + W AFQE+ +EI+G AKEL ++ E
Sbjct: 277 SYCNIVSANMEFKYALKMCIEDSSSHMWAIAFQEATQEIVGMSAKELATMRDENYPAFSL 336
Query: 496 LQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRAD 539
L D IRS++ Y F++ K E Y D ++++ ++ D
Sbjct: 337 LIDG------IRSKI---YKFKIWSKLEKYQDMEKLRFYILGLD 371
>gi|341875977|gb|EGT31912.1| hypothetical protein CAEBREN_17155 [Caenorhabditis brenneri]
Length = 1297
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 129/460 (28%), Positives = 223/460 (48%), Gaps = 39/460 (8%)
Query: 101 RNHGPILKNEAPAR----IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFD 156
R P L+ AP+ ++PIA + + I +T K +R + + KVF+F+
Sbjct: 859 RAPAPELQRRAPSNTDRDVMPIAMITQNVYGFKINGTITRKEAIRTF--PPKNTKVFNFE 916
Query: 157 LLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATS 216
+ DS+G IR FN + + Y I Y I+ G + PA K FN+ +++EI L S
Sbjct: 917 VTDSNGDTIRCVAFNELAESLYSTITENVSYFITNGKVVPANKRFNNTGHDYEINL---S 973
Query: 217 TVDLCTEEDDSIPKQQFSFRHISEIESA-ENNSIVDVIGIVISVNPS-VPILRKNGMETQ 274
V + D + + + + IS E A + +DV+ V ++P K G
Sbjct: 974 NVSIVEPGGDVVAAPKLNLKRISLGEIAGHSGERIDVLAYVEKMDPKPTEFTSKAGKTVV 1033
Query: 275 RRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGK-SIGT 333
+R + L D S R V+LTLWG+ K L ++ V F V+ K DF+G S+GT
Sbjct: 1034 KRDMELIDESNRFVKLTLWGEEAIK-ADYLHKV--VAFKGVIPKK-----DFNGAYSLGT 1085
Query: 334 IPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLG 393
++ +P+ + EL EW+ + + G+ +E +T++ ++ G
Sbjct: 1086 GYGARIIADPEISGVTELYEWYKT----------VKPTKPSGSSSEAPRTIAGLQKMQFG 1135
Query: 394 RSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECD 453
SEK D+ +V+A IT I ++ Y C C KKV + ++C++CN+ +
Sbjct: 1136 DSEKGDFASVKAMITRINPNTALYKGC----SSEGCQKKVIELDGEFRCEKCNKTMRHFK 1191
Query: 454 YRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQ 513
+ Y++Q ++ D+TG +VTAF ++ +++G A E+ LK + + + F
Sbjct: 1192 WLYMMQFELSDETGQVYVTAFGDNATKVVGRTAAEVGELKETKPGE--YNAVFEKLKFVS 1249
Query: 514 YLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDL 553
++RL+ K E Y +E R K+TV ++VN + +Y+ DL
Sbjct: 1250 KMWRLRCKMETYNEEVRQKMTVFGVEEVN---QDKYIGDL 1286
>gi|123394470|ref|XP_001300571.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121881632|gb|EAX87641.1| hypothetical protein TVAG_226230 [Trichomonas vaginalis G3]
Length = 590
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 136/462 (29%), Positives = 226/462 (48%), Gaps = 37/462 (8%)
Query: 111 APARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDG-KVFSFDLLDSDGGEIRVTC 169
A A I++L+ Y + I ARV K + N G K+ + L D G+I+ T
Sbjct: 147 AQAHFASISSLSAYISNFTILARVVKK----EFKNLESKGLKILTLILADK-SGDIKATA 201
Query: 170 FNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEED-DSI 228
+ ++F E++E +VY I+ G + A+K +N K++ EI + + +L D + I
Sbjct: 202 WRDHAEKFNELVEENQVYAITGGKVSFAKKQYNPTKHDCEITFDGNTKFELVNNADTEEI 261
Query: 229 PKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSV 288
K +F+F ISEI++ ++ VD++G+ I + PS K G E R + + D S R +
Sbjct: 262 GKTKFNFVKISEIDNLAKDATVDIVGVAIDIQPSQMKRLKTGREVNHRSIEIADDSDRKI 321
Query: 289 ELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINP-DFAE 347
EL LW C ++V G P++ +K K+ +F+G+ T+ T + ++P D E
Sbjct: 322 ELNLWDRNC--------DLVQEGSNPIIVLKDAKIGEFNGRKNLTV-GTLIQVDPSDIQE 372
Query: 348 AHELREWFDSGGKNAATVSISREIAAGGAKNEIHKT----VSQIKNEGLGRSEKPDWVTV 403
A++LREW+ SG N + SI + GG N +T + I +E LG + D+ V
Sbjct: 373 ANDLREWY-SG--NPSLSSIKALSSTGGVDNSNRRTPIVMIKTIMDENLGGNGHTDYFDV 429
Query: 404 RAFITFIK-SDSFCYTACPLMIGDRQCN-KKVTQSGNRWQCDRCNQEIDECDYRYLLQAQ 461
A I I SF Y ACP + +C+ K + C+ C I + RY +
Sbjct: 430 IASIYNITPQRSFFYLACP----NEKCSFKGLKDRDGGLFCESCGNMITDPVPRYNYKIG 485
Query: 462 IQDQTG-LTWVTAF--QESGEEILGCPA----KELYMLKYELQDDVRFGEIIRSRVFNQY 514
I D TG + +V F E+ + I+G A KEL L E + ++ ++
Sbjct: 486 ITDFTGTVMFVQVFGGGENIDRIMGMNAAEFKKELESLDAEDKIAAMLDKVTNRLKGKEF 545
Query: 515 LFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
+FRLK E +Y ++ ++ V+ +V Y + S+ LL+ I+K
Sbjct: 546 MFRLKANENVYNEKSTIRFNVVNTFEVKYDTASKRLLEEIAK 587
>gi|302826559|ref|XP_002994724.1| hypothetical protein SELMODRAFT_432625 [Selaginella moellendorffii]
gi|300137041|gb|EFJ04211.1| hypothetical protein SELMODRAFT_432625 [Selaginella moellendorffii]
Length = 320
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 104/325 (32%), Positives = 167/325 (51%), Gaps = 26/325 (8%)
Query: 223 EEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKD 282
+ED + P+ + I E +S V+V+GIVI + R +G ++R L L D
Sbjct: 7 DEDATFPRIVLAKTSILSACQKERDSFVNVVGIVIWIGTITVTSRDSGAFVKKRTLCLGD 66
Query: 283 TSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFIN 342
SG SV+L LW +EG +QE +D G P++ VK GKV+D++GKS+ I + + I
Sbjct: 67 DSGHSVDLCLWDLKAEEEGSYIQERIDSGVQPIICVKGGKVSDYNGKSLSAIGVSTILIE 126
Query: 343 PDFAEAHELREW----FDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKP 398
P+ +LREW ++ + S SR+ + T+S+I N L E
Sbjct: 127 PEMEAVADLREWMTLYYNVTNFIHLSTSSSRQTVSHTT------TLSEISNMQLKVLESS 180
Query: 399 DWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLL 458
V A + +K+D F Y AC ++ RQC KK T++ + W C CN E +++Y L
Sbjct: 181 PIYRVIATVKEMKTDEFYYNACINVVNARQCGKKTTRTADGWFCSYCNIESANMEFKYAL 240
Query: 459 QAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYE-------LQDDVRFGEIIRSRVF 511
+ I+D + W AFQE+ +EI+G AKEL ++ E L D IRS+++
Sbjct: 241 KMCIEDSSSHVWAIAFQEAAQEIVGMSAKELATMRDENYPAFSLLIDG------IRSKIY 294
Query: 512 NQYLFRLKIKEELYGDEQRVKITVI 536
N F+++ K E Y D ++++ ++
Sbjct: 295 N---FKIRSKLEKYQDMEKLRFYIL 316
>gi|320168096|gb|EFW44995.1| replication protein A [Capsaspora owczarzaki ATCC 30864]
Length = 688
Score = 165 bits (418), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 151/526 (28%), Positives = 237/526 (45%), Gaps = 65/526 (12%)
Query: 80 GSIVRSFQPTVQPPYQPPPNFRNHGP------ILKNEAPARIIPIAAL-NPYQGRWAIKA 132
G++ +F V P + +F P I+ +PIA + N ++ I+A
Sbjct: 173 GAVTSAFGARVASPPRAQQSFPAFDPNKTLEQIVAEGQTPETLPIAYIYNTMPSKFIIRA 232
Query: 133 RVTAKGDLRRY-------NNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGR 185
RVT K +R + NN G G+V S DL D D EIR T FN +D +EVG+
Sbjct: 233 RVTLKHPVREFARKNPGPNNQSG-GRVCSIDLKD-DSSEIRATAFNEQIDTIINSLEVGK 290
Query: 186 VYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAE 245
Y SK S+KPA + +N L +++E+ E + C +E + +P+ ++F +E+
Sbjct: 291 AYYFSKMSVKPANRMYNTLPSDYELTFEKGTQWVPCHDEAN-LPQVVYNFVRFDGLETLG 349
Query: 246 NNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQ 305
+ VD+IGI S I K +R L L D S R + +TLW N +
Sbjct: 350 EQT-VDLIGICKSARDVQTITTKQQKSVPKRELTLVDQSQREITVTLW----NTQATNFD 404
Query: 306 EMVDVGFFPVLSVKSGKVNDFSG-KSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAAT 364
E V V VL+ + K+ DFSG KS I S+ + + PD E ELR WFDS G+N +
Sbjct: 405 EQVAVDNR-VLAFRKVKLTDFSGVKSASCISSSAMEVEPDMPETQELRAWFDSEGRNQSF 463
Query: 365 VSISREIAAGGAKNEIHKTVSQI-KNEGLGRSEKPDWVTVRAFITFIK------------ 411
++ A N T QI N LG ++K ++ ++ +TF+K
Sbjct: 464 QQVTGGAGAYSGGNRDLATFQQINSNHSLG-ADKAEYARLQGTVTFLKTKFDDKSGSNDG 522
Query: 412 SDSFCYTAC-----PLMIG------DRQ-------CNKKVTQSGNRWQCDRCNQEIDECD 453
S Y AC P+ G RQ C KK+ C +Q I C+
Sbjct: 523 SVGMYYYACGNIKQPIDNGQAAAPNSRQQAQQPSVCGKKLAIGEQCPTCGDVSQRISGCN 582
Query: 454 YRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLK-YELQ---DDVRFGEIIRSR 509
++ D TG W+TAF+++ + ILG K+L + +EL + + I
Sbjct: 583 LTFV----ADDSTGSQWITAFRDTAQTILGASNKDLTLEHLHELALNGEQEQLDSIYAQA 638
Query: 510 VFNQYLFRLKIKEELYGD-EQRVKITVIRADQVNYSSESRYLLDLI 554
+ + Y L+IK+E R + ++R ++++ +S L+ LI
Sbjct: 639 LHHPYEMTLRIKQEQSQQGGMRTRYQLVRLAPIDFARDSLRLVRLI 684
>gi|403359819|gb|EJY79566.1| hypothetical protein OXYTRI_23155 [Oxytricha trifallax]
Length = 1367
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 118/452 (26%), Positives = 219/452 (48%), Gaps = 42/452 (9%)
Query: 92 PPYQPPPN--FRNHGPILKNEAPARII--PIAALNPYQGRWAIKARVTAKGDLRRYNNAR 147
P Y PN +N N+A ++ PI AL+ + W IKAR+ K + + + N R
Sbjct: 240 PEYTQEPNQAMKNQSS---NQAGDDLVFTPIKALSTFHYDWRIKARIIKKYEKKTWKNQR 296
Query: 148 GDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNE 207
+G + + DL+DS G +I+ T F + +F ++I+ G +YL S G +K A + F +KN+
Sbjct: 297 NEGSLMNIDLMDSFGTQIQATFFRDALIKFGDMIKEGHIYLFSNGQVKLANQKFTSIKND 356
Query: 208 WEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILR 267
+ + + + + +D SI + ++F + +I + E + +VD+I ++I+ + +
Sbjct: 357 FCLVFDKQADIKEVP-DDTSINQNGYNFVTVKDILTMEKSKVVDIIAVIINPGNLIELQT 415
Query: 268 KNGMETQRRILNLKDTSGRSVELTLWGDFCNK----EGQKLQEMVDVGFFPVLSVKSGKV 323
K G +R++ + D S SV + W + +K EG V++++ +V
Sbjct: 416 KAGQNKVKRLITIADDSYMSVNVCFWTESASKFDLLEGNH-----------VVALRGVRV 464
Query: 324 NDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKT 383
DF GK + Q+ + D ++L++WF++ N SI++ K +K
Sbjct: 465 VDFQGKQLNFGDDAQMIKDFDHPRTYQLKKWFENLNSNDIIRSINKS-DKESPKKASNKD 523
Query: 384 VSQIKNEGLGR-----------SEKPDWVTVRAFITFIKSDS-FCYTACPLMIGDRQCNK 431
+Q+ E L + ++ + T+ I +I++D Y ACP + CN+
Sbjct: 524 STQLVAELLEQLNLNEPEQNSYAKSNKFFTINCNIAYIRNDDKVLYLACP----EETCNR 579
Query: 432 KVTQSG-NRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELY 490
KV + N ++C+ CN+ D C Y+L ++QDQ+ +V ++E G +I+ A E+
Sbjct: 580 KVIEEQPNVYKCEFCNRTYDRCVPTYMLMVKLQDQSDSIYVNFYRELGSQIMAASANEIK 639
Query: 491 MLKYELQDDVRFGEIIRSRVFNQYLFRLKIKE 522
LK E Q + S+ F Y +K K+
Sbjct: 640 RLKDENQHTQISDQFFDSQ-FKNYQILIKAKQ 670
>gi|402220694|gb|EJU00765.1| replication factor-a protein, partial [Dacryopinax sp. DJM-731 SS1]
Length = 493
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 123/446 (27%), Positives = 208/446 (46%), Gaps = 47/446 (10%)
Query: 63 PGSFSTPNSGTFRAPNAGSIVRSFQPTVQPPYQPPPNFRNHGPILKNEAPARIIPIAALN 122
P + ++ + T +AG+ +SF +P I PI L+
Sbjct: 80 PATPTSTKTSTINKISAGAATKSFTKASGLKGEPT-----------------ITPINQLS 122
Query: 123 PYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIE 182
PY+ +W +KAR+T K D+R+++N RG G +F+ + D + G I+ T F DR + IE
Sbjct: 123 PYRNQWTVKARITKKSDVRKWSNERGSGYLFNCTMTD-ETGSIKATAFMEQCDRLLKEIE 181
Query: 183 VGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIE 242
G+VY ISKG + PA+K +N ++EI ++ V+LC DDS FS+ ++ +
Sbjct: 182 EGKVYYISKGKILPAKKIYNTTGCDYEITFNESTNVELC--NDDSNMPGGFSYTVLANLG 239
Query: 243 SAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQ 302
+ + IG+V S + +N I + D SG S ++TLWG
Sbjct: 240 DLSKDDTCNAIGVVRSRWRTWNNHEENSAPHAHII--IVDHSGFSCKVTLWG-------- 289
Query: 303 KLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGG--- 359
K+ E DV PV++++ KV D+ G+ + + + +NPD EAH LR W+D+ G
Sbjct: 290 KVAEDFDVKDQPVIALRHVKVGDYHGRDLNFQGDSSMTLNPDLKEAHFLRGWYDANGLTY 349
Query: 360 KNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITF---IKSDS-- 414
K S +G + T+ ++K++ +G + + TV+ + IK ++
Sbjct: 350 KFQPCQGASGSGESGLVNHSQLMTLEEVKSKNIG-IKTTSYFTVKLRVKATPRIKEENRH 408
Query: 415 --FCYTACPLMIGDRQCNKKVT--QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTW 470
Y AC C K ++ S +W C +C+ D +YRYL++ + D G W
Sbjct: 409 MPISYPACR----SEDCVKGLSYDDSDRKWHCAKCSGCFDAPEYRYLMRISLGDHMGSAW 464
Query: 471 VTAFQESGEEILGCPAKELYMLKYEL 496
+ G+ + A+ L +K L
Sbjct: 465 FNIYDNVGKLLFEKKAEVLEQMKVWL 490
>gi|403350046|gb|EJY74468.1| hypothetical protein OXYTRI_04276 [Oxytricha trifallax]
Length = 1442
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 117/451 (25%), Positives = 220/451 (48%), Gaps = 40/451 (8%)
Query: 92 PPYQPPPN--FRNHGPILKNEAPARII--PIAALNPYQGRWAIKARVTAKGDLRRYNNAR 147
P Y PN +N N+A ++ PI AL+ + W IKAR+ K + + + N R
Sbjct: 240 PEYTQEPNQAMKNQSS---NQAGDDLVFTPIKALSTFHYDWRIKARIIKKYEKKTWKNQR 296
Query: 148 GDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNE 207
+G + + DL+DS G +I+ T F + +F ++I+ G +YL S G +K A + F +KN+
Sbjct: 297 NEGSLMNIDLMDSFGTQIQATFFRDALIKFGDMIKEGHIYLFSNGQVKLANQKFTSIKND 356
Query: 208 WEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILR 267
+ + + + + +D SI + ++F + +I + E + +VD+I ++I+ + +
Sbjct: 357 FCLVFDKQADIKEVP-DDTSINQNGYNFVTVKDILTMEKSKVVDIIAVIINPGNLIELQT 415
Query: 268 KNGMETQRRILNLKDTSGRSVELTLWGDFCNK----EGQKLQEMVDVGFFPVLSVKSGKV 323
K G +R++ + D S SV + W + +K EG V++++ +V
Sbjct: 416 KAGQNKVKRLITIADDSYMSVNVCFWTESASKFDLLEGNH-----------VVALRGVRV 464
Query: 324 NDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSIS---REIAAGGAKNEI 380
DF GK + Q+ + D ++L++WF++ N SI+ +E + +
Sbjct: 465 VDFQGKQLNFGDDAQMIKDFDHPRTYQLKKWFENLNSNDIIRSINKSDKESPKKASNKDS 524
Query: 381 HKTVSQIKNE-GLGRSEKPDWV------TVRAFITFIKSDS-FCYTACPLMIGDRQCNKK 432
+ V+++ + L E+ + T+ I +I++D Y ACP + CN+K
Sbjct: 525 TQLVAELLEQLNLNEPEQNSYAKSNKFFTINCNIAYIRNDDKVLYLACP----EETCNRK 580
Query: 433 VTQSG-NRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYM 491
V + N ++C+ CN+ D C Y+L ++QDQ+ +V ++E G +I+ A E+
Sbjct: 581 VIEEQPNVYKCEFCNRTYDRCVPTYMLMVKLQDQSDSIYVNFYRELGSQIMAASANEIKR 640
Query: 492 LKYELQDDVRFGEIIRSRVFNQYLFRLKIKE 522
LK E Q + S+ F Y +K K+
Sbjct: 641 LKDENQHTQISDQFFDSQ-FKNYQILIKAKQ 670
>gi|391326773|ref|XP_003737886.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Metaseiulus occidentalis]
Length = 393
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 101/278 (36%), Positives = 151/278 (54%), Gaps = 17/278 (6%)
Query: 93 PYQPPPNFRNHGP---ILKNEAP---ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNA 146
P P P+ +L +P A + PI+A+NP+Q R I+ RVT KG+++ + A
Sbjct: 121 PTDPKPDVSTPAKTSRVLPQGSPSTRANLFPISAVNPFQNRCTIRGRVTNKGEIKTWEKA 180
Query: 147 RGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKN 206
G GK+FSF++LD D GEIRVT FN D+FY+ IE +VY IS K A K + N
Sbjct: 181 SGKGKLFSFEILD-DSGEIRVTGFNEQCDKFYDYIEPKKVYYISGFQCKAANKQWRTTNN 239
Query: 207 EWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPIL 266
E+E+ L S V+LCTE D +P+Q +SF IS+IE+ + ++DV GI+ +
Sbjct: 240 EYELTLGKFSNVELCTETCDDLPEQLYSFVAISDIETLPADQMIDVCGILKNAGEPQTFN 299
Query: 267 RK-NGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVND 325
RK +G +R + D S + V LTLW D +K +D PV+ + ++
Sbjct: 300 RKSDGKPLTKRDAFIVDDSRKVVTLTLWNDAISK--------IDRTDHPVILISKARITS 351
Query: 326 FSGK-SIGTIPSTQLFINPDFAEAHELREWFDSGGKNA 362
F+G SI T + + I+PD A EL+ W+ G++
Sbjct: 352 FNGGLSIATSAGSAVEIDPDIDRAKELKTWWAKEGESG 389
>gi|294875666|ref|XP_002767426.1| replication factor a 1, rfa1, putative [Perkinsus marinus ATCC
50983]
gi|239868993|gb|EER00144.1| replication factor a 1, rfa1, putative [Perkinsus marinus ATCC
50983]
Length = 582
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 92/269 (34%), Positives = 153/269 (56%), Gaps = 12/269 (4%)
Query: 104 GPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGG 163
GP+ + IIPI+ L+ Y +W IK RV++K D+R + NARG+G++FS +L+D G
Sbjct: 306 GPVSYRPVASDIIPISQLSVYSQKWTIKGRVSSKSDVRTFVNARGEGQLFSIELVDDQNG 365
Query: 164 EIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTE 223
EIR T FN+ V +FY I+ GRVY SKG +K A FN +E+ + ++ +
Sbjct: 366 EIRATFFNSAVTKFYPAIQQGRVYTFSKGQVKQANARFN-PGAAYELTFNDDAIIEEAND 424
Query: 224 EDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNP-SVPILRKNGMETQRRILNLKD 282
D IP+ + I+ I+ + VD+ GI+ P S ++R G E RR + D
Sbjct: 425 SAD-IPRILYKISKIATIQDRNADEFVDLCGIITHCAPISTIVVRNTGQERARRNFTIVD 483
Query: 283 TSGRSVELTLWGDF---CNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQL 339
SG S+E+T+WG+ C + ++Q + PV+ +K+ +++++ GKS+ T +T L
Sbjct: 484 DSGCSIEMTVWGETAQNCGVDENRVQ------YHPVVMIKNARISNYGGKSLTTASTTTL 537
Query: 340 FINPDFAEAHELREWFDSGGKNAATVSIS 368
++PD + A E++ W+ GG+ A ++S
Sbjct: 538 EVDPDDSRAFEVKNWWLQGGQTGAVQALS 566
>gi|154413577|ref|XP_001579818.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121914029|gb|EAY18832.1| hypothetical protein TVAG_294830 [Trichomonas vaginalis G3]
Length = 590
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 126/496 (25%), Positives = 229/496 (46%), Gaps = 34/496 (6%)
Query: 71 SGTFRAPNAGSIVRSFQPTVQPPYQPPPNFRNHGPILKNEAPARI---IPIAALNPYQGR 127
S +P G+I S P + P N++ ++ IPIA+LN Y
Sbjct: 120 SAPMTSPQRGTITASPASVTNSPSKVKMTV---SPTRSNQSTMQMTTNIPIASLNQYLTS 176
Query: 128 WAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVY 187
W++ R+ +K +R++ +R GK+FS + D + EI+ T FN ++F ++E +VY
Sbjct: 177 WSLIVRIISKSQMRQFQGSRP-GKLFSIIMRDKNNDEIKGTFFNQEAEKFENLVEQDKVY 235
Query: 188 LISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENN 247
+S G +K A + +N K+E+EI ++TS++ + +D+SIP F IS+ S
Sbjct: 236 KVSCGRVKKANERYNSTKSEFEITFDSTSSI-IEIPDDNSIPANVLKFTKISDC-SKMTG 293
Query: 248 SIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEM 307
VD+I I+ + I K+G ++R + + D +G ++E+TLWG + QK E
Sbjct: 294 KTVDIISIITFIGDCQTIKTKSGSSIEKRNITVSDETG-TIEVTLWGSSATEFDQKESE- 351
Query: 308 VDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSI 367
+ V++ V+DF G S+ S + +NP + +R W++S
Sbjct: 352 -------IFCVRNVTVSDFRGVSLNVGQSATIVVNPPDNDVKNIRNWYESLNDEKKENLK 404
Query: 368 SREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSF-CYTACPLMIGD 426
+ + + +S+I + + R+E + V I + S Y ACP +
Sbjct: 405 QKLLIPDYGQAATINCLSEIDEKQMCRTENGEVFCVNVMIQDMPSSRKPVYQACP----N 460
Query: 427 RQCNKK---VTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILG 483
C + Q + C +CN+E+ RY L + D +G ++ G+E
Sbjct: 461 EACRGSGLIIDQETGKMICKKCNKEVTNPKLRYSLSLNVGDYSGSAYINVI---GDENSF 517
Query: 484 CPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFR-LKIKEELYGDEQRVKITVIRADQVN 542
P + ++E+ D + +R+ + + FR L++K E VK+T I +VN
Sbjct: 518 MPLINVKPEEFEIDDTTK----LRTMLLKKSFFRALRVKVRGKNSEYGVKLTAISGGEVN 573
Query: 543 YSSESRYLLDLISKSF 558
++ E+ + + I+ SF
Sbjct: 574 FAEEALRIANNITASF 589
>gi|294875668|ref|XP_002767427.1| replication factor a 1, rfa1, putative [Perkinsus marinus ATCC
50983]
gi|239868994|gb|EER00145.1| replication factor a 1, rfa1, putative [Perkinsus marinus ATCC
50983]
Length = 577
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 92/269 (34%), Positives = 153/269 (56%), Gaps = 12/269 (4%)
Query: 104 GPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGG 163
GP+ + IIPI+ L+ Y +W IK RV++K D+R + NARG+G++FS +L+D G
Sbjct: 301 GPVSYRPVASDIIPISQLSVYSQKWTIKGRVSSKSDVRTFVNARGEGQLFSIELVDDQNG 360
Query: 164 EIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTE 223
EIR T FN+ V +FY I+ GRVY SKG +K A FN +E+ + ++ +
Sbjct: 361 EIRATFFNSAVTKFYPAIQQGRVYTFSKGQVKQANARFNP-GAAYELTFNDDAIIEEAND 419
Query: 224 EDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNP-SVPILRKNGMETQRRILNLKD 282
D IP+ + I+ I+ + VD+ GI+ P S ++R G E RR + D
Sbjct: 420 SAD-IPRILYKISKIATIQDRNADEFVDLCGIITHCAPISTIVVRNTGQERARRNFTIVD 478
Query: 283 TSGRSVELTLWGDF---CNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQL 339
SG S+E+T+WG+ C + ++Q + PV+ +K+ +++++ GKS+ T +T L
Sbjct: 479 DSGCSIEMTVWGETAQNCGVDENRVQ------YHPVVMIKNARISNYGGKSLTTASTTTL 532
Query: 340 FINPDFAEAHELREWFDSGGKNAATVSIS 368
++PD + A E++ W+ GG+ A ++S
Sbjct: 533 EVDPDDSRAFEVKNWWLQGGQTGAVQALS 561
>gi|401885437|gb|EJT49554.1| hypothetical protein A1Q1_01298 [Trichosporon asahii var. asahii
CBS 2479]
Length = 387
Score = 162 bits (409), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 102/276 (36%), Positives = 151/276 (54%), Gaps = 29/276 (10%)
Query: 80 GSIVRSFQPTVQPPYQPPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGD 139
G+ R +P P R+ GPI PI L+P W IKARVT K D
Sbjct: 140 GAASRGGASNARPAAAPRGPSRDMGPIF---------PIEGLSP----WTIKARVTQKSD 186
Query: 140 LRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQK 199
++ ++N RG+GK+FS L+D + GEIR T FN VD FY+++E G+V+ ISK + A+K
Sbjct: 187 IKHWSNQRGEGKLFSVTLMD-ETGEIRATGFNDQVDAFYQLLEEGKVFFISKARINIAKK 245
Query: 200 NFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISV 259
F+++ NE+EI E TE + S+P+ +++F ++++ES + ++ DVIG+V V
Sbjct: 246 QFSNVNNEYEITFENQ------TEIEPSVPEIKYNFTKLNDLESLQKDATTDVIGVVQEV 299
Query: 260 NPSVPILRKNGMET-QRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSV 318
+ I K + +R + L D SG+SV LTLWG K E PV++
Sbjct: 300 HDLGQITSKATQKPFNKRDIQLVDQSGQSVRLTLWG--------KTAENFTHYDHPVVAF 351
Query: 319 KSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREW 354
K KV+DF G+S+ S + INP+ EA LR W
Sbjct: 352 KGVKVSDFGGRSLSMFSSATMAINPNTDEACALRGW 387
>gi|340378782|ref|XP_003387906.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Amphimedon queenslandica]
Length = 256
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 82/251 (32%), Positives = 139/251 (55%), Gaps = 8/251 (3%)
Query: 306 EMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATV 365
E D FPV+++KS +++DF+G S+ + S+ + NPD EAH+L+ W+D GK+
Sbjct: 7 EEFDGSMFPVVALKSVRLSDFNGVSLSALASSTILTNPDLPEAHQLKGWYDHHGKDQDVT 66
Query: 366 SISREIAAGGAKNEIHKTVSQIKN-EGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMI 424
S+S A G + T QIK LG+ EKPD+ + + I ++K ++ YTACP
Sbjct: 67 SLSSRNATGSFSDSAFLTFRQIKELNQLGQQEKPDYFSCKGMIVYLKKENCLYTACP--- 123
Query: 425 GDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILG 483
+ CNKKV G + C++C + YR +++ D W+ F E G I+G
Sbjct: 124 -SQDCNKKVNDDGTGNYFCEKCGKSYPSFKYRMIMKLNCVDYLDNCWLDTFHEGGSAIVG 182
Query: 484 CPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNY 543
++L L+ QD +F I++ F +++FR++ K + Y DEQR++ + + VNY
Sbjct: 183 MDGQKLGELRE--QDAAQFDNIMQEAYFKEFIFRVRAKVDTYNDEQRLRCSCVSVQPVNY 240
Query: 544 SSESRYLLDLI 554
++E++ L+ +I
Sbjct: 241 ATETKRLIKMI 251
>gi|340386214|ref|XP_003391603.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like,
partial [Amphimedon queenslandica]
Length = 251
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 82/251 (32%), Positives = 139/251 (55%), Gaps = 8/251 (3%)
Query: 306 EMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATV 365
E D FPV+++KS +++DF+G S+ + S+ + NPD EAH+L+ W+D GK+
Sbjct: 2 EEFDGSMFPVVALKSVRLSDFNGVSLSALASSTILTNPDLPEAHQLKGWYDHHGKDQDVT 61
Query: 366 SISREIAAGGAKNEIHKTVSQIKN-EGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMI 424
S+S A G + T QIK LG+ EKPD+ + + I ++K ++ YTACP
Sbjct: 62 SLSSRNATGSFSDSAFLTFRQIKELNQLGQQEKPDYFSCKGMIVYLKKENCLYTACP--- 118
Query: 425 GDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILG 483
+ CNKKV G + C++C + YR +++ D W+ F E G I+G
Sbjct: 119 -SQDCNKKVNDDGTGNYFCEKCGKSYPSFKYRVIMKLNCVDYLDNCWLDTFHEGGSAIVG 177
Query: 484 CPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNY 543
++L L+ QD +F I++ F +++FR++ K + Y DEQR++ + + VNY
Sbjct: 178 MDGQKLGELRE--QDAAQFDNIMQEAYFKEFIFRVRAKVDTYNDEQRLRCSCVTVQPVNY 235
Query: 544 SSESRYLLDLI 554
++E++ L+ +I
Sbjct: 236 ATETKRLIKMI 246
>gi|355704842|gb|EHH30767.1| hypothetical protein EGK_20543 [Macaca mulatta]
Length = 267
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/278 (34%), Positives = 153/278 (55%), Gaps = 17/278 (6%)
Query: 282 DTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFI 341
DTS + V TLWG+ +K Q PVL++K +V+DF G+S+ + S+ +
Sbjct: 2 DTSRKVVTATLWGEDADKFDGSRQ--------PVLAIKGARVSDFGGRSLSVLSSSTIIA 53
Query: 342 NPDFAEAHELREWFDSG-GKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDW 400
NPD EA++LR WFD+G + ++S + + GG N KT+ ++K E LG+S KPD+
Sbjct: 54 NPDIPEAYKLRGWFDAGQALDGVSISDLKSGSVGGG-NTNWKTLYEVKFENLGQSNKPDY 112
Query: 401 VTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQ 459
+ A + +++ ++ Y ACP + CNKKV Q ++C++C+ E Y +L
Sbjct: 113 FSSVATVVYLRKENCMYQACPT----QDCNKKVIDQQNGLYRCEKCDTEFPNFKYHMILS 168
Query: 460 AQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLK 519
I D WVT FQES E ILG A L LK +++ F E+ ++ F ++FR++
Sbjct: 169 VNIADFQENQWVTCFQESAEAILGQNAAYLGDLK--DKNEQAFEEVFQNANFRSFIFRVR 226
Query: 520 IKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKS 557
+K E Y +E R+K TV+ V+Y R L+ I +S
Sbjct: 227 VKVETYNEESRIKATVMDVKPVDYREYGRRLVLSIRRS 264
>gi|302841268|ref|XP_002952179.1| hypothetical protein VOLCADRAFT_105399 [Volvox carteri f.
nagariensis]
gi|300262444|gb|EFJ46650.1| hypothetical protein VOLCADRAFT_105399 [Volvox carteri f.
nagariensis]
Length = 499
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 133/464 (28%), Positives = 217/464 (46%), Gaps = 47/464 (10%)
Query: 118 IAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRF 177
IA L+PY W IKA+V K LR + D K+ + DL+D G I+ T + A +RF
Sbjct: 55 IAQLHPYDSNWCIKAKVELKAPLRSMSIRGSDVKILTVDLVDDTGQMIQGTFWRAPAERF 114
Query: 178 YEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEI-FLEATSTVDLCTEEDDSIPKQQFSFR 236
E + G+VY+ + +KPA K ++ +K +++I F E T TE D +
Sbjct: 115 SESLMEGKVYVFHRFKVKPADKKYSSVKADYQIDFTERTE----VTEAADQDTSSMTAAV 170
Query: 237 HISEIE----SAENNSIVDVIGIVISVNPSVPILRK-NGMETQRRILNLKDTSGRSVELT 291
I+ IE VDV+G+V+++ P + RK + E RR + L D S +SV LT
Sbjct: 171 EITPIEVLPRRVGGRMPVDVMGVVLALGPLGTVKRKADSSELPRRDITLGDMSCKSVVLT 230
Query: 292 LWGDFCNK-----EGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFA 346
LWGD + EGQ+ + V+ V +V DF+G S+ ++ + + +NP+ +
Sbjct: 231 LWGDNASAFAGQLEGQEGKV--------VMQVTHVRVTDFNGCSVSSLTKSVVSLNPEGS 282
Query: 347 EAHELREWFDSGGKN-----------AATVSISREIAAGGAKNEIH--KTVSQIKNEGLG 393
A +L W+ + G T ++S A ++ K V+ I + L
Sbjct: 283 GAAQLLTWYSTAGMVPDRFTPVGQDLPGTRAVSNGSGAVPSRERFFTVKDVAGISADSL- 341
Query: 394 RSEKPDWVTVRAFITFIKSD-SFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDEC 452
+ +K + V A+I + S+ Y A P K V Q G RW + + ++
Sbjct: 342 QDDKATFQAVTAYIAMVNSELQMYYLANP-----ENGRKVVDQGGGRW-AEADGRVVERP 395
Query: 453 DYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFN 512
++RY+L ++ D TG V F + E ++G A EL LK + F +R+ +
Sbjct: 396 EHRYVLSVKLADHTGEAVVQLFNKEAEAVMGIKADELAALKEAGEG---FEAALRAAQWR 452
Query: 513 QYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
+ + K Y E+RV+ T R D +++ SE + L LI K
Sbjct: 453 PWSVVVMSKAREYNGERRVRHTAHRVDTLDWVSEGQRLAMLIGK 496
>gi|307193861|gb|EFN76495.1| Replication protein A 70 kDa DNA-binding subunit [Harpegnathos
saltator]
Length = 489
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 136/458 (29%), Positives = 217/458 (47%), Gaps = 48/458 (10%)
Query: 107 LKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIR 166
L N A ++ + + AIKARVT K ++ + N +G K+FS L D + EI+
Sbjct: 68 LTNYAVFKVSDYKVSSTIDEKQAIKARVTNKSSIKEWKNKKG--KLFSMHLHD-NSDEIK 124
Query: 167 VTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDD 226
FN D+ Y +E +VY IS LK + + +N LKN++EI + + + + +D
Sbjct: 125 CVAFN---DKLYNNVENNKVYHISNYELKDSDRRYNKLKNQYEIIITDDTRIKE-SHDDA 180
Query: 227 SIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTS-- 284
IP F F IS++E+ + +DV+G+V+ N + K E +R +++ D S
Sbjct: 181 DIPSIHFDFCPISQVENKQIYDTIDVLGVVVKSN--LKTFTKQSNENFKRDIDIVDNSQP 238
Query: 285 -GRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTI----PSTQL 339
G + +TLWG Q+ QE D +L++K +V++F+GK + I ST +
Sbjct: 239 SGARICVTLWG-------QQAQEF-DCNNGTILAIKGARVDEFNGKRLTIINSPERSTII 290
Query: 340 FINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPD 399
+PD EA L EW+ S N +T+ ++ LG + +
Sbjct: 291 RKDPDLPEARVLLEWYRS---------------YWSKFNCTFRTIRELTEATLGIT--SN 333
Query: 400 WVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSG-NRWQCDRCNQEIDECDYRYLL 458
+ V A I I ++ Y ACP C KK+T+ +++CD C ++ Y LL
Sbjct: 334 FFKVMAIIDSIHIENCIYKACP----KDNCKKKLTELAFEKYRCDSCKRDYLNFKYCLLL 389
Query: 459 QAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRL 518
I D TG VTAF E E+IL A+EL LK D+ + I V +Y F L
Sbjct: 390 NMIISDITGNHRVTAFDEVAEKILEISAQELVRLKE--NDNNAYIRKIDEAVLKRYTFYL 447
Query: 519 KIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
K E++ ++R K T I + +N+ Y L I++
Sbjct: 448 KGIAEVFHGQRRPKYTCISIEPLNHHIYLMYFLQKINE 485
>gi|290982322|ref|XP_002673879.1| replication protein A1, 70 kDa-like protein [Naegleria gruberi]
gi|284087466|gb|EFC41135.1| replication protein A1, 70 kDa-like protein [Naegleria gruberi]
Length = 691
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 149/570 (26%), Positives = 260/570 (45%), Gaps = 66/570 (11%)
Query: 14 PKIFSESELTAQKTIPSNNLPQPVRVNNYSAPNSGTFNLQNSGTFNSQNPGSFSTPNSGT 73
P FS + + T+ NN PQ V NN PN TFN P +T ++
Sbjct: 160 PPSFSVNNSHSNNTV--NNQPQQVNRNNQPQPN----------TFNRPQPQQTATNSNPV 207
Query: 74 FRAPNAGSIVRSFQPTVQPPYQPPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKAR 133
+ + R PT P Q + N GP+ +I+P+ + P+ W IK R
Sbjct: 208 QQRNQQQTFNRPSNPTNNAPRQ---SVGNVGPL----KTKQILPLVGITPWVSDWVIKVR 260
Query: 134 VTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGS 193
VT KG+L++++N +G +FS +L+D DG EIR T F ++FY+ I+ +VY + G
Sbjct: 261 VTKKGELKKWSNPTKEGHLFSLELIDEDGVEIRATFF---TNKFYDHIKESKVYFMKGGK 317
Query: 194 LKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDD---SIPKQQFSFRHISEIESAENNSIV 250
K A K ++ L + +E+ S ++ EDD +IP+ F F ++++ E + V
Sbjct: 318 AKSADKKYSRLPHSYELTFYDNSVIEEA--EDDQAKNIPQGHFEFIPFEQLKTIEKKNGV 375
Query: 251 DVIGIVISVNPSVPILRK-----NGMETQRR----ILNLKDTSGRSVE--LTLWGDFCNK 299
D++G+V S+ S + K N +E Q IL KD G E +TLWG
Sbjct: 376 DIVGVVKSIGNSEQMTIKSKQDPNAIEKQTTKRELILINKDNDGNIYEAAITLWG----- 430
Query: 300 EGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWF---D 356
E + D F L++K K G + T ST++ N D E+ + E F +
Sbjct: 431 EDNISFNIGDTVIFTALTIKEFK----GGVKLSTSKSTKILTNFDLPESRRVMEQFANLE 486
Query: 357 SGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSE-KPDWVTVRAFITFIKSDSF 415
+ + V +S ++G K + + ++ + L + + K +R+ + K +
Sbjct: 487 TPIEEIKGVLLSAIESSGSFKKYSLEDLDTVRVQDLEQEKFKSKTFFIRSHFSLFKDGNL 546
Query: 416 CYTACPLMIGDRQCNKKVT--QSGNRWQCDRCNQEIDECD--YRYLLQAQIQDQTGLTWV 471
Y AC + + +KK+ + N + C CN + DE ++Y+ + D T +
Sbjct: 547 TYCAC---VNEECKSKKLKRDEMDNSYTCPLCNTKYDETTAAHKYMTSVVLGDHTCTKTL 603
Query: 472 TAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQ-- 529
TAF + +LG PA + Y L +D+ + I +S++ Y+ R ++ +EQ
Sbjct: 604 TAFDKGMTLLLGVPAGDFYALDDRTKDE--YKSIAQSKIAT-YMVRAGVQN---NNEQGP 657
Query: 530 RVKITVIRADQVNYSSESRYLLDLISKSFR 559
+V+ + + + ++ E++ L I+ R
Sbjct: 658 QVRFSFVGLKEPEWAKEAKGCLGTINAYCR 687
>gi|260793787|ref|XP_002591892.1| hypothetical protein BRAFLDRAFT_89409 [Branchiostoma floridae]
gi|229277104|gb|EEN47903.1| hypothetical protein BRAFLDRAFT_89409 [Branchiostoma floridae]
Length = 256
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 94/247 (38%), Positives = 132/247 (53%), Gaps = 29/247 (11%)
Query: 4 IILDCEPIGNPKIFSESELTAQKTIPSNNLPQPVRVNNYSAPNSGTFNLQNSGTFNSQNP 63
I+L+ + +GNP ++ +T P PV+ N G + N G S NP
Sbjct: 39 IMLEVQVLGNPGNKIKNPTPVNQT-GGGTAPAPVQ-------NGGAAHAVNGGMNRSGNP 90
Query: 64 GSFSTPNSGTFRAPNAGSIVRSFQPTVQPPYQPPPNFRNHGPILKNEAPARIIPIAALNP 123
G+ + PN G AGS P P + PIA LNP
Sbjct: 91 GAGARPNQGA-----AGSSFYGRSNVTASPGTP--------------GRGKPTPIAGLNP 131
Query: 124 YQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEV 183
YQ RW I+ARVT KG +R +NNARG+GK+FS DLLD + GEIR T FN D+FY++IE+
Sbjct: 132 YQNRWTIRARVTNKGSIRTWNNARGEGKLFSMDLLD-ESGEIRATAFNDQCDKFYDLIEI 190
Query: 184 GRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIES 243
G+VY SKGSLK A K + ++N++E+ +TV LC +E D +P Q++F I ++E
Sbjct: 191 GKVYFFSKGSLKTANKQYTSIQNDYEMSFNNDTTVVLCEDEAD-LPSIQYNFVPIEKLEE 249
Query: 244 AENNSIV 250
N+I+
Sbjct: 250 MNPNTII 256
>gi|159480170|ref|XP_001698157.1| replication protein A, 70 kDa DNA-binding subunit [Chlamydomonas
reinhardtii]
gi|158273655|gb|EDO99442.1| replication protein A, 70 kDa DNA-binding subunit [Chlamydomonas
reinhardtii]
Length = 647
Score = 155 bits (391), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 126/462 (27%), Positives = 218/462 (47%), Gaps = 35/462 (7%)
Query: 118 IAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRF 177
IA L+PY+ W I+A+V K LR ++ D KV + DL+D G I+ T + +R
Sbjct: 195 IAQLHPYETNWCIRAKVDRKAPLRALP-SKPDVKVMTVDLVDETGTAIQGTFWRGPAERM 253
Query: 178 YEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRH 237
E + G+VY+ K +KPA K + +KNE++I T+ V ++D S
Sbjct: 254 SEQLVEGKVYVFHKFKVKPADKKYVTVKNEYQIDFTDTTDVSEAADQDSSAMTTAVEVTP 313
Query: 238 ISEI-ESAENNSIVDVIGIVISVNPSVPILRK-NGMETQRRILNLKDTSGRSVELTLWGD 295
I ++ + VDV+G+V+++ + RK + E RR + + D SG+SV +TLWGD
Sbjct: 314 IEQLPRRIGQRAPVDVMGVVLALGSYGTVKRKADNSELPRREVTIGDQSGKSVAITLWGD 373
Query: 296 FCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWF 355
+ Q+L+ M VL V +V D++G S+ T+ + INP+ A ++ W+
Sbjct: 374 MSSTTAQQLEGMEGRA---VLQVTGCRVTDYNGCSLSTLSKSVASINPETPAAQQMMLWY 430
Query: 356 DSGGKN-------AATVSISREIAAGGAKNEIH----------KTVSQI--KNEGLGRSE 396
+ N A + ++R G K VS + + E L ++
Sbjct: 431 KTSEMNPDRFTAVGADLVMARGSQGGSQGGAGGVPARERYFSLKDVSGLTAETEALA-ND 489
Query: 397 KPDWVTVRAFITFIKSD--SFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDY 454
K + V A + I +D + Y A P K V Q G R+ + ++ +++ ++
Sbjct: 490 KAIFQNVTACVAMINNDDKNIFYLANP-----ENGRKVVDQGGGRFWSEADSKVVEKPEH 544
Query: 455 RYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQY 514
RYLL ++ D TG T V F + E ++G A EL LK + F +++ + +
Sbjct: 545 RYLLSVRLADHTGETNVQLFGKEAEAVMGMRADELAALKEAGGEG--FAGALKAAQWKPW 602
Query: 515 LFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
+ K Y + V+ + + + +++ SES L+ LI+K
Sbjct: 603 QVVVMSKAREYNGNRSVRHSAYKVENIDWVSESSRLVTLIAK 644
>gi|413944587|gb|AFW77236.1| hypothetical protein ZEAMMB73_509278 [Zea mays]
Length = 464
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 110/307 (35%), Positives = 164/307 (53%), Gaps = 28/307 (9%)
Query: 267 RKNGMETQ-RRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVND 325
R GM T RR ++ + R + + D + GQ+L +MVD PV+++KS KV D
Sbjct: 165 RSFGMRTSVRRKIDNETILKRDIVVADVNDLATRAGQELLDMVDSS--PVVAIKSLKVFD 222
Query: 326 FSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIA---AGGAKNEIHK 382
F G S+ TI + L INPD EA L W+DS GK+ + V IS E AGG K+
Sbjct: 223 FQGMSLSTIDRSTLEINPDLPEAKNLMSWYDSEGKDTSLVPISAEAGATRAGGFKSMYFD 282
Query: 383 TV--SQI-KNEGLGRSEKPDWVTVRAFITFIKSDSFC-YTACPLMIGDRQCNKKVTQ--- 435
V S I N +G+ EKP + ++ A I+ IK D Y AC CNKKVT+
Sbjct: 283 RVFLSYITSNPSMGQ-EKPVFFSLYAIISHIKPDQIMWYRAC------MTCNKKVTEVFR 335
Query: 436 SGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYE 495
SG + C+ C + EC RY++ ++ D T WV+ F E E+I+GC A EL ++ E
Sbjct: 336 SG--YWCEGCQKNDSECSLRYIMVIKVSDPTSEAWVSVFNEHAEKIIGCNADELDRIRKE 393
Query: 496 L------QDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRY 549
Q D + ++ + +LFR+ + + Y +E+R +ITV V+Y++ES+Y
Sbjct: 394 WARHRLQQGDDIYVLKLKEATWVPHLFRVSVTQHEYMNEKRQRITVRGEAPVDYAAESKY 453
Query: 550 LLDLISK 556
L++ I+K
Sbjct: 454 LVEEIAK 460
>gi|156088471|ref|XP_001611642.1| hypothetical protein [Babesia bovis T2Bo]
gi|154798896|gb|EDO08074.1| conserved hypothetical protein [Babesia bovis]
Length = 462
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 126/456 (27%), Positives = 214/456 (46%), Gaps = 37/456 (8%)
Query: 117 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDR 176
PI + Y W IKARV K LR +GD + D++D G IRV + +
Sbjct: 6 PIKNITTYTNNWTIKARVLDKAPLRA---IKGDNHIMHVDVVDKHGDTIRVKFWGKAATK 62
Query: 177 FYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFR 236
+ E++E G+VYL SKG+++ + K FN +++EI S +D +E D ++
Sbjct: 63 WDEVLEKGKVYLFSKGNVELSNKKFNTTPHKYEITCHQDSQIDPVDDEGDIKMQRDHKLL 122
Query: 237 HISEIESAE--NNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWG 294
+ +I+S + VD++ I +V+P+V I + G E +RIL++ D +G ++L LWG
Sbjct: 123 TLRDIKSMPQVTQAPVDLLCIANTVHPAVNITTRAGKELPKRILSIVDNTGYEMDLVLWG 182
Query: 295 DFCNKEGQKLQEMVDVGFFPV-LSVKS--GKVNDFSGKSIGTIPSTQLFINPDFAEAHEL 351
D N +G +++M L+VK G + S ++ +TQ I D + +L
Sbjct: 183 DHANMDG--IEQMEGKAIIATKLAVKEWQGSRSCQSSQNSDVTLATQENI-KDQDKLTQL 239
Query: 352 REWFDSGGKNAATVSISREIAAGGAKNEIHKT-----VSQIKNEGLGRSE--KPDWVTVR 404
WF++ N T S + A AK+ +T +++ K + R++ K W
Sbjct: 240 ESWFENAKANNETFK-SLKTQAQAAKDNYEETDIANLLTKTKGSFILRAKLRKIHWKNKE 298
Query: 405 AFITFIKSDSFCYTACPLMIGDRQCNKKVT--QSGNRWQCDRCNQEIDECDYRYLLQAQI 462
+ Y ACP+ C+KKV + NR++C C+ E RY+
Sbjct: 299 GSV------RMWYQACPM------CSKKVVMDEDTNRYKCIACSDISVEPVPRYIFSCNF 346
Query: 463 QDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKE 522
D TG E+GE++LG AKEL + + RF E +Y ++
Sbjct: 347 MDATGKINAQITAENGEKLLGKSAKELENMDPDTLK--RFCEF--DATLGEYKLSGYVRS 402
Query: 523 ELYGDEQRVKITVIRADQVNYSSESRYLLDLISKSF 558
+Y E R + T+ R + +NY +E+ ++LD + ++
Sbjct: 403 NMYNGETRYQFTITRVEDMNYPAETAHMLDKMQITY 438
>gi|302825229|ref|XP_002994245.1| hypothetical protein SELMODRAFT_432174 [Selaginella moellendorffii]
gi|300137892|gb|EFJ04690.1| hypothetical protein SELMODRAFT_432174 [Selaginella moellendorffii]
Length = 982
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 102/336 (30%), Positives = 162/336 (48%), Gaps = 33/336 (9%)
Query: 153 FSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLIS-KGSLKPAQKNFNHLKNEWEIF 211
SFD++D G EIR+ + + I G VY S G ++ + + + + WEI
Sbjct: 1 MSFDVVDVQGTEIRIIGSDDCALVLSDKIVQGTVYSFSGSGGIRRSNQAYTPFEATWEI- 59
Query: 212 LEATSTVDLCT-EEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNG 270
+A ++ +ED + P+ + I E +S VDV+GIVI + R +G
Sbjct: 60 -QANKGMEFTALDEDATFPRIVLAKTSILSACQKERDSFVDVVGIVIWIGTITVTSRDSG 118
Query: 271 METQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKS 330
++R L L D SG SV+L LW +EG +QE +D G P++ VK GKV+D++GKS
Sbjct: 119 TFVKKRTLCLGDDSGHSVDLCLWDLKAEEEGSYIQERIDSGVQPIICVKGGKVSDYNGKS 178
Query: 331 IGTIPSTQLFINPDFAEAHELREW----FDSGGKNAATVSISREIAAGGAKNEIHKTVSQ 386
+ I + + I P+ +LREW ++ + S SR+ + T+S+
Sbjct: 179 LSAIGVSTILIEPEMEAVADLREWMTLYYNVTNFIHLSTSSSRQTVS------CTTTLSE 232
Query: 387 IKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCN 446
I N L SF Y AC ++ RQC KK T++ + W C+ CN
Sbjct: 233 ISNMQLKM-------------------SFYYNACINVVNARQCGKKTTRTADGWFCNYCN 273
Query: 447 QEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEIL 482
E +++Y L+ I+D + W AFQE+ +EI+
Sbjct: 274 FESANMEFKYALKMCIEDSSSHVWAIAFQEATQEIV 309
>gi|302755672|ref|XP_002961260.1| hypothetical protein SELMODRAFT_403000 [Selaginella moellendorffii]
gi|300172199|gb|EFJ38799.1| hypothetical protein SELMODRAFT_403000 [Selaginella moellendorffii]
Length = 326
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 103/331 (31%), Positives = 173/331 (52%), Gaps = 19/331 (5%)
Query: 223 EEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKD 282
+ED + P+ + I E +S VDV+GI+I + R +G ++R L L D
Sbjct: 7 DEDATFPRIVLAKTSILSACQKERDSFVDVVGIIIWIGTITVTSRDSGTFVKKRTLCLGD 66
Query: 283 TSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFIN 342
SG SV+L LW +EG +QE +D G P++ VK GKV+D++GKS+ I + + I
Sbjct: 67 DSGHSVDLCLWDLKAEEEGSYIQEQIDSGVQPIICVKGGKVSDYNGKSLSAIGVSTILIE 126
Query: 343 PDFAEAHELREW----FDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKP 398
P+ +LREW ++ + S SR+ + T+S+I N L E
Sbjct: 127 PEMEAVADLREWMTLYYNVTNFIHLSTSSSRQTVSCTT------TLSEISNMQLKVLESS 180
Query: 399 DWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLL 458
V A + +K+D F Y AC ++ RQC KK T++ + W C+ CN E +++Y L
Sbjct: 181 PIYRVIATVKEMKTDEFYYNACINVVNARQCGKKTTRTADGWLCNYCNFESANMEFKYAL 240
Query: 459 QAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEI---IRSRVFNQYL 515
+ I+D + W AFQE+ +EI+G KEL ++ E + F + IRS++ Y
Sbjct: 241 KMCIEDSSSHVWAIAFQEAAQEIVGMSTKELATMRDE--NYPAFSLLIDGIRSKI---YK 295
Query: 516 FRLKIKEELYGDEQRVK-ITVIRADQVNYSS 545
F+++ K E Y D +++ + + + +++ ++S
Sbjct: 296 FKIRSKLEKYQDMEKLSYMELAKTNKIKHTS 326
>gi|282931288|gb|ADB03555.1| replication protein complex A largest subunit [Tetrahymena
thermophila]
Length = 609
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 118/442 (26%), Positives = 210/442 (47%), Gaps = 49/442 (11%)
Query: 118 IAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRF 177
I L P IK R+T KGDL+ + +G K+FS D++D G E ++ FN + +++
Sbjct: 168 IRNLQPNGQPQTIKVRITKKGDLKSFKEKQG--KLFSIDVIDKFGDECSISFFNEIAEQY 225
Query: 178 YEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRH 237
+ +VG+V ++ + S+K N + K + + + S + +C +ED SIP + + +
Sbjct: 226 DGLFKVGQVIVLKQFSVK-VNNNHQYNKGDHTVTVNKESKILIC-QEDPSIPMIKLNRQF 283
Query: 238 ISEIESAENNSIVDVIGIVISVNPSVP--ILRKNGMETQRRILNLKDTSGRSVELTLWG- 294
I ++++ + ++D+I +V+ + V IL+K+ + +R + D S E+TLWG
Sbjct: 284 IQDMQNKQKGDLIDLI-VVVKADTEVKTMILKKDNQQQSKRDIISFDESLIETEITLWGE 342
Query: 295 ---DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKS-IGTIPSTQLFINPD---FAE 347
D+ K+G ++ K K+ +F K I TQ+F+NPD F +
Sbjct: 343 TAKDYDAKQGD------------IIVFKDAKIGEFKDKKQINIGYGTQIFMNPDEQLFPQ 390
Query: 348 AHELREWFDSGGKNAATVSISREIAAGGAKNEI---HKTVSQIKNEGLGRSEKPD---WV 401
H++++W+ S + + +I + E+ +++ +K E P+ W
Sbjct: 391 IHDVKKWYLSLNSDQLS-TIQKAQGNDTGPREVTSFESSLNILKEEIKNLQTDPEMKIWK 449
Query: 402 TVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQ 461
+R I +IK Y AC C KK+ ++ W C CN++ +E D RY+L
Sbjct: 450 EIRGQIMYIKDTPLYYNAC------FSCKKKIARNNEVWTCINCNKDFNEPDSRYILSLN 503
Query: 462 IQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVF-----NQYLF 516
I D T WV+AF E G++ILG + +Y +D G + ++ +Y F
Sbjct: 504 ISDSTDTIWVSAFDEVGQKILGVKGD---VFRY-ADEDTEHGTETKKKLLMAAQNKEYRF 559
Query: 517 RLKIKEELYGDEQRVKITVIRA 538
L K+E + TVI A
Sbjct: 560 LLLTKQERDQNGNARDKTVIHA 581
>gi|146163802|ref|XP_001012333.2| hypothetical protein TTHERM_00106890 [Tetrahymena thermophila]
gi|146145960|gb|EAR92088.2| hypothetical protein TTHERM_00106890 [Tetrahymena thermophila
SB210]
Length = 671
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 118/442 (26%), Positives = 210/442 (47%), Gaps = 49/442 (11%)
Query: 118 IAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRF 177
I L P IK R+T KGDL+ + +G K+FS D++D G E ++ FN + +++
Sbjct: 230 IRNLQPNGQPQTIKVRITKKGDLKSFKEKQG--KLFSIDVIDKFGDECSISFFNEIAEQY 287
Query: 178 YEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRH 237
+ +VG+V ++ + S+K N + K + + + S + +C +ED SIP + + +
Sbjct: 288 DGLFKVGQVIVLKQFSVK-VNNNHQYNKGDHTVTVNKESKILIC-QEDPSIPMIKLNRQF 345
Query: 238 ISEIESAENNSIVDVIGIVISVNPSVP--ILRKNGMETQRRILNLKDTSGRSVELTLWG- 294
I ++++ + ++D+I +V+ + V IL+K+ + +R + D S E+TLWG
Sbjct: 346 IQDMQNKQKGDLIDLI-VVVKADTEVKTMILKKDNQQQSKRDIISFDESLIETEITLWGE 404
Query: 295 ---DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKS-IGTIPSTQLFINPD---FAE 347
D+ K+G ++ K K+ +F K I TQ+F+NPD F +
Sbjct: 405 TAKDYDAKQGD------------IIVFKDAKIGEFKDKKQINIGYGTQIFMNPDEQLFPQ 452
Query: 348 AHELREWFDSGGKNAATVSISREIAAGGAKNEI---HKTVSQIKNEGLGRSEKPD---WV 401
H++++W+ S + + +I + E+ +++ +K E P+ W
Sbjct: 453 IHDVKKWYLSLNSDQLS-TIQKAQGNDTGPREVTSFESSLNILKEEIKNLQTDPEMKIWK 511
Query: 402 TVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQ 461
+R I +IK Y AC C KK+ ++ W C CN++ +E D RY+L
Sbjct: 512 EIRGQIMYIKDTPLYYNAC------FSCKKKIARNNEVWTCINCNKDFNEPDSRYILSLN 565
Query: 462 IQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVF-----NQYLF 516
I D T WV+AF E G++ILG + +Y +D G + ++ +Y F
Sbjct: 566 ISDSTDTIWVSAFDEVGQKILGVKGD---VFRY-ADEDTEHGTETKKKLLMAAQNKEYRF 621
Query: 517 RLKIKEELYGDEQRVKITVIRA 538
L K+E + TVI A
Sbjct: 622 LLLTKQERDQNGNARDKTVIHA 643
>gi|324505539|gb|ADY42379.1| Replication factor A 73 kDa subunit [Ascaris suum]
Length = 620
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 112/406 (27%), Positives = 189/406 (46%), Gaps = 29/406 (7%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
I PI L PY W + +V ++R++ RG +FSF +D DG EIR+ FN +
Sbjct: 179 ITPIKLLTPYCKNWRLCIKVVCIEEMRQF---RGTS-LFSFSGVDDDGVEIRICAFNHLA 234
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDD-SIPKQQF 233
++ ++++ ++Y I + S+KP K F + + E+ + + + C + + S PK +
Sbjct: 235 EKVAALVKLDQMYYIRRASVKPTTKRFKRNQYDMEVIIRDETEIIECIDRAEISSPKIRC 294
Query: 234 SFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLW 293
F I + N+ VD++G+V V + K G +R + + D S RSV TLW
Sbjct: 295 DFIRIRNLPKFANSE-VDMMGVVREVGDVKQLTGKMGEALVKRDIQIVDDSLRSVIATLW 353
Query: 294 GDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGK-SIGTIPSTQLFINPDFAEAHELR 352
G+ + DV +L K V + G S+ T ST + +N D E LR
Sbjct: 354 GE----RAKNFDASSDV---TILVFKRALVRTYHGSISLSTTGSTIVDVNADLPEVKALR 406
Query: 353 EWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKS 412
W++ G +NA+ ++S E+ ++ HK + ++K K + V A I I
Sbjct: 407 RWYE-GNRNASFAALSTELIFSSSE---HKWIGEVKVLN-----KMIYFNVTAMIMNINV 457
Query: 413 DSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVT 472
D+ Y C + C KK+ + C +C D+ Y Y L ++ D TG WV+
Sbjct: 458 DNAVYKGCV----NEGCRKKLLEVDGTLHCPKCGNASDDYKYFYTLSMELCDMTGTHWVS 513
Query: 473 AFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRL 518
F +S E+++G A E+ + D + R+ +F Y FR+
Sbjct: 514 VFDDSAEKLMGESADEIAKTRSFNYDT--YCAHFRALLFKTYAFRV 557
>gi|340059107|emb|CCC53482.1| putative replication factor A, 51kDa subunit, fragment, partial
[Trypanosoma vivax Y486]
Length = 317
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 110/316 (34%), Positives = 177/316 (56%), Gaps = 22/316 (6%)
Query: 117 PIAALNPYQG-RWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVD 175
PI +L P+ G +W I+ARVT K D+RR+N GK+FSF L+D + IR T FN VD
Sbjct: 11 PIDSLTPFLGSKWWIRARVTDKSDVRRWNKPTSQGKLFSFTLID-ESASIRATVFNDAVD 69
Query: 176 RFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDS-IPKQQFS 234
F +I G+VY + G +K A + F+++ N++E+ ++TS + + + S +P Q+++
Sbjct: 70 IFDPLIVNGQVYYLGGGQVKNANRKFSNVNNDYEVTFDSTSQISIAQDSGSSLLPMQRYN 129
Query: 235 FRHISEIESAENNSIVDVIGIVISVNPSVPILRKN-GMETQRRILNLKDTSGRSVELTLW 293
F I ++ E S+VDV+ +V SV+ I +K+ G E +R + + D++ SV++TLW
Sbjct: 130 FVPIGILKKREVGSLVDVLVVVHSVDDLTTITQKSTGRELVKRNVRVCDSTA-SVDVTLW 188
Query: 294 GDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELRE 353
N E + G VL+++ KV +F G S+ + + +NP+ A+ +L E
Sbjct: 189 ----NDEARNWT----FGQGTVLAIRQLKVGNFDGVSLSSTSQSSFDVNPNIADTKKLAE 240
Query: 354 WF-DSGGKNAATVSISREIAAGGAKNEI-------HKTVSQIKNEGLGRSEKPDWVTVRA 405
W+ +GG++ ++S S AAGG +K I EGLGR +PD+V VR
Sbjct: 241 WYISTGGRDVVSLS-SLTSAAGGVGGSTLGEGYRGYKYFDDIAVEGLGRGPRPDYVDVRC 299
Query: 406 FITFIKSDSFCYTACP 421
++K DS Y ACP
Sbjct: 300 TPVYLKQDSQWYDACP 315
>gi|308813768|ref|XP_003084190.1| replication protein, putative (ISS) [Ostreococcus tauri]
gi|116056073|emb|CAL58606.1| replication protein, putative (ISS) [Ostreococcus tauri]
Length = 566
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 116/449 (25%), Positives = 219/449 (48%), Gaps = 35/449 (7%)
Query: 116 IPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVD 175
+P++ALNPY+ + G +R AR L GE R
Sbjct: 131 VPLSALNPYRTPVTFASTRARAGRVR---CARSISSTKRAPPLAPRSGERRSKSTT---- 183
Query: 176 RFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQ--- 232
+ + R + +PA K ++ N++E+ L+ + ++LCT+ D S ++
Sbjct: 184 ---QFSRLARFTTSPRALSRPADKRYSTSGNDYEMNLDGKAEIELCTDIDQSSAQKMQRA 240
Query: 233 FSFRHISEIES---AENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVE 289
++F I ++ + A N V + +S ++ N T+R I+ L D S +++
Sbjct: 241 YAFVSIDKLSTKIGARGNVDVVAVVKEVSELSTIRRKSDNTELTKREIV-LADDSTKTIR 299
Query: 290 LTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPD-FAEA 348
+TLWGD ++G+KL M + P+++++S +V+D+ G S+GT+ + + I+ D
Sbjct: 300 MTLWGDLAVEQGEKLAAMTN----PIVAIRSVRVSDYDGVSVGTVSRSDMVIDADDIPRV 355
Query: 349 HELREWFDSGGKNAATVSISRE--IAAG-GAKNEIHKT-VSQIKNEGLGRS-EKPDWVTV 403
EL++W+ GG + T S + E +AG G K +I +++++ E + S +KP + V
Sbjct: 356 AELKKWWTEGG-SETTFSAAGEGLTSAGQGQKRDIETMNLAELQPEEIAPSTDKPVFAWV 414
Query: 404 RAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQ 463
A K D Y A + + NKKV +S +W C+ Q D C+ RY+++ +
Sbjct: 415 CAHTILCKPDQTMYYAA---VPEEGNNKKVVESDGKWYCEANGQTYDTCERRYIMRFKAI 471
Query: 464 DQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVR-FGEIIRSRVFNQYLFRLKIKE 522
D W+ AF + ++ G A EL+ L ++D + + ++ + + F +K+
Sbjct: 472 DGYEGAWLNAFNDEATKMFGISANELHELH---ENDYKAYENAVKKMTYKHWSFLVKVVT 528
Query: 523 ELYGDEQRVKITVIRADQVNYSSESRYLL 551
E Y E + ++T ++ + VNY++ES+ LL
Sbjct: 529 EEYQGELKRRLTAVKCNAVNYAAESKRLL 557
>gi|378755051|gb|EHY65078.1| hypothetical protein NERG_01524 [Nematocida sp. 1 ERTm2]
Length = 569
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 116/453 (25%), Positives = 215/453 (47%), Gaps = 33/453 (7%)
Query: 108 KNEAPARIIPIAALNPYQGR-WAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIR 166
K + +I I LNP+Q + W+IKA+V +K +R Y GKVFS + D + +
Sbjct: 140 KRDGDKKIGSIKELNPFQQKAWSIKAKVVSKTTVREYMKDGRAGKVFSIIVTDGES-KCN 198
Query: 167 VTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDD 226
+ F VD F++ I++ + Y I+ G+LK A K + +++EIF++ + T+ TE
Sbjct: 199 IIFFTEFVDGFFDKIQIYKTYEITGGALKLANKKYVEDIHDYEIFVDRSFTI-TPTENML 257
Query: 227 SIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMET-QRRILNLKDTSG 285
+ K IS + + + +V ++ ++++V ++RK T ++R L + D SG
Sbjct: 258 NAVKMPSVVTRISRLRE-KMSEVVSLLVVIMTVGEIETVIRKKDQATMKKRTLKVGDDSG 316
Query: 286 RSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGK-SIGTIPSTQLFINPD 344
+V LW + + +D VL +++ +V+++ IG + NP+
Sbjct: 317 EAVPFVLWEETAD---------MDFSVGDVLLLENVRVSEYQNMPQIGMARDGIISFNPE 367
Query: 345 FAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVR 404
E +L+ W++ KN T S++ + G + + K + ++K G+ ++ TV+
Sbjct: 368 LPEVFKLKGWYN---KNEGTFSVAEPRKSVGRERQKTK-LEEVKANGM------EYATVK 417
Query: 405 AFITFIKSDSFCYTACPLMIGDRQCNKKV---TQSGNRWQCDRCNQEIDECDYRYLLQAQ 461
I +I S Y +CP+ CNKKV +S + C +C++ C Y + A
Sbjct: 418 CTILYISEKSVMYPSCPM----DNCNKKVEHPAESPENYYCSKCDRIYTNCSQSYSVSAS 473
Query: 462 IQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIK 521
I D T W++ F +S +L K + M +D + + I + + + R++ +
Sbjct: 474 IADDTSSVWLSLFGDSA-SVLFNNLKAVEMEDLSTEDHDEYKKTIAKSIGEEMVIRIRGR 532
Query: 522 EELYGDEQRVKITVIRADQVNYSSESRYLLDLI 554
E Y E ++ T + V+Y ES LL I
Sbjct: 533 ETRYNGEPSIQYTAVSITPVDYLEESNNLLAQI 565
>gi|62318947|dbj|BAD94042.1| RNA helicase [Arabidopsis thaliana]
Length = 253
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 85/249 (34%), Positives = 144/249 (57%), Gaps = 13/249 (5%)
Query: 314 PVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREI-- 371
PV+++KS KV DF G S+ TI + + INP+ EA +L+ WFDS GK + SI +
Sbjct: 4 PVIAIKSLKVGDFQGVSLSTISRSNVVINPESPEAKKLKSWFDSEGKEISMSSIGSGMSP 63
Query: 372 -AAGGAKNEIHKTV--SQIKNEGLGRSEKPDWVTVRAFITFIKSD-SFCYTACPLMIGDR 427
A G+++ V S I + EKP + + RA+I+FIK D + Y AC +
Sbjct: 64 SAKNGSRSLYTDRVLLSHITSNPSLFEEKPVFFSTRAYISFIKPDQTMWYQAC------K 117
Query: 428 QCNKKVTQSGNR-WQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPA 486
CNKKVT++ + + C+ C ++ +EC RY++ ++ D +G TW+++F + E+ILGC A
Sbjct: 118 TCNKKVTEALDSGYWCEGCQRKYEECSLRYIMAVKVTDSSGETWISSFNDEAEKILGCSA 177
Query: 487 KELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSE 546
EL LK E + + ++ ++ ++FR+ + + Y E+R ++TV +++++E
Sbjct: 178 DELNKLKSEEGEVNEYQTKLKEATWSSHVFRVSVTQNEYNGEKRQRVTVKGVAPLDFAAE 237
Query: 547 SRYLLDLIS 555
+R LL IS
Sbjct: 238 TRLLLQDIS 246
>gi|70941362|ref|XP_740979.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56519062|emb|CAH80613.1| hypothetical protein PC000124.04.0 [Plasmodium chabaudi chabaudi]
Length = 360
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 79/195 (40%), Positives = 125/195 (64%), Gaps = 7/195 (3%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
++PI L+ Y +W IKARV +K ++R++ +GKVF+ +L D + GEI+V F V
Sbjct: 162 LMPINKLSQYSTKWIIKARVQSKDNIRKFYTGNKEGKVFNIELCD-ESGEIKVNFFGKAV 220
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
D++Y+ +EVG++Y ISKG++K A K FN LK++ EI L+ S ++L E D +IPK ++
Sbjct: 221 DKWYDYLEVGKIYKISKGNIKSANKKFNTLKHDCEITLDENSILELLEENDMNIPKYIYN 280
Query: 235 FRHISEIESAENN-SIVDVIGIVISVNPSVPIL-RKNGMETQRRILNLKDTSGRSVELTL 292
F ISEI++ N ++VDVIGIV+S IL +K G +++ L L D + ++ +TL
Sbjct: 281 FYPISEIKANINTGTLVDVIGIVLSFQELNQILIKKTGQYKEKKDLMLIDETNETINVTL 340
Query: 293 WGDFCNKEGQKLQEM 307
WG+ K++EM
Sbjct: 341 WGE----SAVKMEEM 351
>gi|344235409|gb|EGV91512.1| Replication protein A 70 kDa DNA-binding subunit [Cricetulus
griseus]
Length = 209
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 76/193 (39%), Positives = 116/193 (60%), Gaps = 10/193 (5%)
Query: 163 GEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCT 222
GEIR T FN VD+F+ +IEV +VY SKG+LK A K F+ +KN++E+ ++V C
Sbjct: 26 GEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFSAVKNDYEMTFNNETSVLPC- 84
Query: 223 EEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPI-LRKNGMETQRRILNLK 281
E+ +P QF F IS++ES +S+VD+IGI S S I ++ + E +R + L
Sbjct: 85 EDGHHLPTVQFDFTGISDLESKSKDSLVDIIGICKSYEDSTKITVKSSNREVAKRNIYLM 144
Query: 282 DTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFI 341
D SG+ V TLWG+ +K Q PV+++K +V+DF G+S+ + S+ + +
Sbjct: 145 DMSGKVVTATLWGEDADKFDGSRQ--------PVMAIKGARVSDFGGRSLSVLSSSTIIV 196
Query: 342 NPDFAEAHELREW 354
NPD EA++LR W
Sbjct: 197 NPDIPEAYKLRGW 209
>gi|145514786|ref|XP_001443298.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124410676|emb|CAK75901.1| unnamed protein product [Paramecium tetraurelia]
Length = 632
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 119/455 (26%), Positives = 213/455 (46%), Gaps = 46/455 (10%)
Query: 111 APA--RIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVT 168
AP+ ++ I L P + IK R+T+K D ++ + G G++FS +++DS+ I+
Sbjct: 197 APSDQNLLKITELYPGMRGFKIKGRITSKSDKTQFKS--GKGQLFSIEIIDSEKSTIQGV 254
Query: 169 CFNAVVDRFYEIIEVGRVYLISKGSLKP---AQKNFNHLKNEWEIFLEATSTVDLCTE-- 223
FN D+FY++I++G+VY G +K + KN N ++E++I E S + E
Sbjct: 255 FFNNQCDKFYDLIDLGKVYYFENGQVKTNRYSSKNQN--QSEYQIHFEEASKISEALEDK 312
Query: 224 EDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDT 283
E D+ P F + I +I++ + D++G++ V P + K+ ++ + L D
Sbjct: 313 EIDAFP---FQIKQIGDIDNLSQDDKCDILGVITEVKPLTQVTTKSNENKAKKNITLFDQ 369
Query: 284 SGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINP 343
+ R +++ LWG + +K Q D +++ + KV D+ T+ ++ +
Sbjct: 370 TQRGIDIVLWG----AQAEKWQFQKD----EIVAFRGLKVTDYQTIRSLTVTNSTTY-EK 420
Query: 344 DFAEAHEL---REWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKN--EGLGRSEKP 398
D + ++ ++++D +N + + + + QIK EG ++
Sbjct: 421 DLTKLQKINGFQDFYDFYSQNKDFIESKPKESKKKFA---LSYIEQIKKDFEGQRNNKLT 477
Query: 399 DWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKV--TQSGNRWQCDRCNQEIDECDYRY 456
+ VRA+IT I + Y C + C +KV QS ++ C CNQ ++ Y+Y
Sbjct: 478 KFYEVRAYITTIFTKLLYYEGCDI------CKRKVVLVQSTKQFFCQNCNQNFNKPSYKY 531
Query: 457 LLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLF 516
+ A+I D TG V+ + G+ IL E + QD EII+ F QY F
Sbjct: 532 IFNAKIADTTGNLPVSVSNDQGQSILKLSCDEFKAKEKNQQD-----EIIKRASFQQYRF 586
Query: 517 RLKIKEELYGDEQ--RVKITVIRADQVNYSSESRY 549
+ K E Y DE R +I+ I D V +E Y
Sbjct: 587 LIIGKMETYNDESRPRFQISSIIQDDVVSDNEELY 621
>gi|145514039|ref|XP_001442930.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124410291|emb|CAK75533.1| unnamed protein product [Paramecium tetraurelia]
Length = 633
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 106/446 (23%), Positives = 209/446 (46%), Gaps = 49/446 (10%)
Query: 94 YQPPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVF 153
YQPP + ++ I+ L P + IK R+T+K D+ ++ N G G +F
Sbjct: 196 YQPP-------------SDINLLKISELYPGMRGFKIKGRITSKTDITQFKN--GKGYLF 240
Query: 154 SFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKP---AQKNFNHLKNEWEI 210
+ +++DSD I+ FN + D+FY+ I++G+VY S+K + KN N +++++I
Sbjct: 241 TIEIIDSDKQTIQGVFFNKLCDKFYDFIDIGKVYYFENASVKTNRYSSKNQN--QSDYQI 298
Query: 211 FLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNG 270
E S + + ++D+ I + + I ++++ + DV+G++I + P+ I+ K+
Sbjct: 299 HFEDFSKISIA-QDDEEIDTFAYQIKTIEDVDNLSLDEKCDVLGVIIDIKPTTQIMTKSN 357
Query: 271 METQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKS 330
++ + L D + R +++ LWG ++ +K Q D +++ + K++D+
Sbjct: 358 ENRSKKNITLYDQTQRGIDIVLWG----QQAEKWQFQKD----EIVAFRGLKISDYQMVR 409
Query: 331 IGTIPSTQLFIN--PDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIK 388
T+ ++ ++ + + + +E+++ KN + K + QIK
Sbjct: 410 NLTVTNSTIYEKNLSNLKKINGFQEFYEFYSKNKDFLETK---PKESRKKFPLSYIEQIK 466
Query: 389 N--EGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT--QSGNRWQCDR 444
EG+ + + ++A+IT I + Y C C +KV Q + C
Sbjct: 467 KDFEGIRNIKFVKFYEIKAYITNIFTKLLYYEGC------ENCKRKVVYIQQTKLYHCQS 520
Query: 445 CNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGE 504
CNQ D+ Y+Y+ A+I D TG V+ + G++IL E ++ + V
Sbjct: 521 CNQNFDQPSYKYMFNAKIADTTGNLSVSVANDQGQQILQLSCDE-----FQKKSQVDKDN 575
Query: 505 IIRSRVFNQYLFRLKIKEELYGDEQR 530
++ F Q+ F + K E Y DE R
Sbjct: 576 YVKRANFQQFRFLIIGKVETYNDEIR 601
>gi|302820843|ref|XP_002992087.1| hypothetical protein SELMODRAFT_430315 [Selaginella moellendorffii]
gi|300140119|gb|EFJ06847.1| hypothetical protein SELMODRAFT_430315 [Selaginella moellendorffii]
Length = 306
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 95/301 (31%), Positives = 146/301 (48%), Gaps = 12/301 (3%)
Query: 153 FSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLIS-KGSLKPAQKNFNHLKNEWEIF 211
SFD++D G EIR+ + + I G VY S G ++ + + + + WEI
Sbjct: 1 MSFDVVDVQGTEIRIIGSDDCALVLSDKIVQGTVYSFSGSGGIRRSNQAYTPFEVTWEIQ 60
Query: 212 LEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGM 271
V +ED + P+ + I E +S VDV+GIVI + R +G
Sbjct: 61 ANK-GMVFTALDEDATFPRIVLAKTSILSACQKERDSFVDVVGIVIWIGTITVTSRDSGT 119
Query: 272 ETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSI 331
++R L L D SG SV+L LW +EG +QE +D G P++ VK GKV+D++GKS+
Sbjct: 120 FVKKRTLCLGDDSGHSVDLCLWDLKAEEEGSYIQERIDSGVQPIICVKGGKVSDYNGKSL 179
Query: 332 GTIPSTQLFINPDFAEAHELREW----FDSGGKNAATVSISREIAAGGAKNEIHKTVSQI 387
I + + I P+ +LREW ++ + S SR+ + T+S+I
Sbjct: 180 SAIGVSTILIEPEMEAVADLREWMTLYYNVTNFIHLSTSSSRQTVS------CTTTLSEI 233
Query: 388 KNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQ 447
N L E V A + +K+D F Y AC ++ RQC KK T++ + W C+ CN
Sbjct: 234 SNMQLKVLESSPIYRVIATVKEMKTDEFYYNACINVVNARQCGKKTTRTADGWFCNYCNF 293
Query: 448 E 448
E
Sbjct: 294 E 294
>gi|340504872|gb|EGR31278.1| kelch motif family protein, putative [Ichthyophthirius multifiliis]
Length = 705
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 109/388 (28%), Positives = 172/388 (44%), Gaps = 58/388 (14%)
Query: 109 NEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARG-DGKVFSFDLLDSDGGEIRV 167
NE ++ IA L P ++ KARVT KG R + +G + +F D++D + E+ +
Sbjct: 325 NEEEGDLLTIAELYPNIEQFKFKARVTKKGTKRNFTTKKGTNSYLFGIDIIDINQDEMSI 384
Query: 168 TCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEAT-STVDLCTEEDD 226
T F VDRF +IIE G Y+ G + Q N N+ + +I + A+ T + +ED
Sbjct: 385 TFFEQEVDRFIDIIEQGHTYIFQIGKI---QSNDNNQYKKGKIQMTASRDTQIMAIDEDK 441
Query: 227 SIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGR 286
I + + + +S+I+ N +DVI +V + L K G + ++ + + D SG
Sbjct: 442 RITQLKIERKMLSDIQQLSKNDKIDVICLVNKEERKIITL-KTGEQRPKKEIFIFDESGV 500
Query: 287 SVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPS--TQLFINPD 344
VE +WGD EG ++ + G +L +K GKV +++G S TQ+ NPD
Sbjct: 501 EVEFDIWGD----EGDQM--TYNKG--DILLIKDGKVGEYNGNKFLQWSSFMTQIITNPD 552
Query: 345 FAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVR 404
+ N++ + + W +R
Sbjct: 553 -----------------------PQSFKDAKLNNQLDENLKI-------------WTEIR 576
Query: 405 AFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQD 464
AFI +K Y ACP +C KK+ + G+ W C C + E RY+ I D
Sbjct: 577 AFILRVKDTPLYYNACP------KCLKKIREEGDSWYCQSCLENRSEPQARYISSICIGD 630
Query: 465 QTGLTWVTAFQESGEEILGCPAKELYML 492
+G WV A+ E EILGC A E +L
Sbjct: 631 ASGQIWVNAYDEVAREILGCSADEFRIL 658
>gi|387593453|gb|EIJ88477.1| hypothetical protein NEQG_01167 [Nematocida parisii ERTm3]
Length = 573
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 115/454 (25%), Positives = 209/454 (46%), Gaps = 38/454 (8%)
Query: 108 KNEAPARIIPIAALNPYQG-RWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIR 166
K EA + I LNP+Q W IKA+V +K +R Y GKVFS + D D +
Sbjct: 141 KKEAKRLVTTIIGLNPFQPITWCIKAKVVSKTSVREYTKDGRAGKVFSIIVTDGDS-KCN 199
Query: 167 VTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDD 226
+ F VD FY+ I++ + Y I+ G+LK A K +N +E+EIF++ + T+ T+ D
Sbjct: 200 IIFFTEFVDAFYDKIQLYKTYEITGGTLKLANKTYNEDIHEYEIFVDRSFTI---TQTAD 256
Query: 227 SIPKQQFSFRHISEIESAEN--NSIVDVIGIVISVNPSVPILR-KNGMETQRRILNLKDT 283
++ + + I ++ N N +V ++ ++ SV +LR K+ ++R L + D
Sbjct: 257 AVKVVKMP-KAIVKVSQLVNKINEVVSMLVVITSVGEIETVLRKKDQYAMKKRTLRVGDD 315
Query: 284 SGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGK-SIGTIPSTQLFIN 342
SG + +W D E +L ++ ++ ++ IG + N
Sbjct: 316 SGETAPFIVWEDTAAME---------FSMGDILLLEGARITEYQNTPQIGLSRDGIISFN 366
Query: 343 PDFAEAHELREWFDSGGKNAAT-VSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWV 401
P+ E +L+ W++ T S+ + GGA ++ ++ +K + + ++
Sbjct: 367 PELPEVFKLKGWYNKNENILQTSSSVGTRKSVGGANRQVK--IADVKTDCM------EYA 418
Query: 402 TVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQ---SGNRWQCDRCNQEIDECDYRYLL 458
T++ + FI + YT+C I D CNKKV S + C++C+ C Y Y
Sbjct: 419 TIKCTVLFISEKTLMYTSC---IAD-NCNKKVEHKIDSPEDYYCNKCDATYARCSYSYGP 474
Query: 459 QAQIQDQTGLTWVTAFQESGEEIL-GCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFR 517
I D + WV+AF ++ + A +L L + D+ ++ EI + + + +
Sbjct: 475 SLSISDNSSSIWVSAFGDTASVLFNNLSAVDLNNL--SVNDNDKYKEITQQSIGAEMIIN 532
Query: 518 LKIKEELYGDEQRVKITVIRADQVNYSSESRYLL 551
++ +E Y E +++ T V+Y E LL
Sbjct: 533 IRGRESTYNGEPQMRYTATAIKPVDYLEECTNLL 566
>gi|387597110|gb|EIJ94730.1| hypothetical protein NEPG_00254 [Nematocida parisii ERTm1]
Length = 573
Score = 138 bits (348), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 115/454 (25%), Positives = 209/454 (46%), Gaps = 38/454 (8%)
Query: 108 KNEAPARIIPIAALNPYQG-RWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIR 166
K EA + I LNP+Q W IKA+V +K +R Y GKVFS + D D +
Sbjct: 141 KKEAKRLVTTIIGLNPFQPITWCIKAKVVSKTSVREYTKDGRAGKVFSIIVTDGDS-KCN 199
Query: 167 VTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDD 226
+ F VD FY+ I++ + Y I+ G+LK A K +N +E+EIF++ + T+ T+ D
Sbjct: 200 IIFFTEFVDAFYDKIQLYKTYEITGGTLKLANKTYNEDIHEYEIFVDRSFTI---TQTAD 256
Query: 227 SIPKQQFSFRHISEIESAEN--NSIVDVIGIVISVNPSVPILR-KNGMETQRRILNLKDT 283
++ + + I ++ N N +V ++ ++ SV +LR K+ ++R L + D
Sbjct: 257 AVKVVKMP-KAIVKVSQLVNKINEVVSMLVVITSVGEIETVLRKKDQYAMKKRTLRVGDD 315
Query: 284 SGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGK-SIGTIPSTQLFIN 342
SG + +W D E +L ++ ++ ++ IG + N
Sbjct: 316 SGETAPFIVWEDTAAME---------FSMGDILLLEGARITEYQNTPQIGLSRDGIISFN 366
Query: 343 PDFAEAHELREWFDSGGKNAAT-VSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWV 401
P+ E +L+ W++ T S+ + GGA ++ ++ +K + + ++
Sbjct: 367 PELPEVFKLKGWYNKNENILQTSSSVGTRKSVGGANRQVK--IADVKTDCM------EYA 418
Query: 402 TVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQ---SGNRWQCDRCNQEIDECDYRYLL 458
T++ + FI + YT+C I D CNKKV S + C++C+ C Y Y
Sbjct: 419 TIKCTVLFISEKTLMYTSC---IAD-NCNKKVEHKIDSPEDYYCNKCDATYARCSYSYGP 474
Query: 459 QAQIQDQTGLTWVTAFQESGEEIL-GCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFR 517
I D + WV+AF ++ + A +L L + D+ ++ EI + + + +
Sbjct: 475 SLSISDNSSSIWVSAFGDTASVLFNNLSAVDLNNL--SVNDNDKYKEITQQSIGAEMIIS 532
Query: 518 LKIKEELYGDEQRVKITVIRADQVNYSSESRYLL 551
++ +E Y E +++ T V+Y E LL
Sbjct: 533 IRGRESTYNGEPQMRYTATAIKPVDYLEECTNLL 566
>gi|339232632|ref|XP_003381433.1| replication protein ADNA-binding subunit [Trichinella spiralis]
gi|316979773|gb|EFV62513.1| replication protein ADNA-binding subunit [Trichinella spiralis]
Length = 345
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 104/419 (24%), Positives = 182/419 (43%), Gaps = 102/419 (24%)
Query: 127 RWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRV 186
RW I+ARVT K D+R ++N RGDGK+FS DL+D + GEIR T FN DR + +++ +V
Sbjct: 4 RWCIRARVTRKTDIRNWSNKRGDGKLFSVDLMD-ESGEIRATAFNQECDRLFSVLQPKQV 62
Query: 187 YLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEED-DSIPKQQFSFRHISEIESAE 245
YLI G +K A + F + N++E+ + + V+ C +E+ +P F F EI
Sbjct: 63 YLIRGGIIKVANRQFTSIDNDYELAFSSETQVEPCKDENVHKLPLLSFRFVKFDEIPRTN 122
Query: 246 NNSIVDVIGIVISVNP-SVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKL 304
++D++G+V + + R + E +R L L D + ++ LTLWG+ E +
Sbjct: 123 RKQLIDILGVVEKIGELEHKVARASQRELLKRDLFLIDDTKTAITLTLWGN----EAENF 178
Query: 305 QEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAAT 364
++ P+++VK +++DF K++ +P N + E+F+ G +
Sbjct: 179 KQ----HGHPIIAVKGVRISDFGDKNL--VPVALADPNRKTETVGDNAEYFNVSG---SV 229
Query: 365 VSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMI 424
+ ISRE + Y ACP
Sbjct: 230 MYISRE-------------------------------------------NCMYPACP--- 243
Query: 425 GDRQCNKKVTQ-SGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILG 483
CNKK+ + ++C++CN++ +R L
Sbjct: 244 -SPDCNKKIADLNTGLYRCEKCNKDFPSFKWRLL-------------------------- 276
Query: 484 CPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVN 542
L D + + + + ++FRL+ K+E+Y DE R+K ++ ++N
Sbjct: 277 ------------LSDVDSYDAVFDNVLLKSFIFRLRAKQEIYNDEMRMKYVCMQVYEIN 323
>gi|242086609|ref|XP_002439137.1| hypothetical protein SORBIDRAFT_09g001220 [Sorghum bicolor]
gi|241944422|gb|EES17567.1| hypothetical protein SORBIDRAFT_09g001220 [Sorghum bicolor]
Length = 388
Score = 135 bits (341), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 104/181 (57%), Gaps = 4/181 (2%)
Query: 382 KTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRW- 440
KTV++I+N LG KP+ TV+A ++ + S+S CY ACPL++ QCN +T +G W
Sbjct: 159 KTVAEIRN-SLGYLVKPELFTVKAILSVMNSESLCYAACPLVVNGYQCNGAITSNGYEWW 217
Query: 441 QCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDV 500
CD C+ CDYRY + Q+ D TG + T Q GEEI G A+ELY++KYE QD
Sbjct: 218 NCDECSMTFAACDYRYKIFVQLADSTGEIYATTSQAVGEEIFGQTARELYLVKYEKQDHA 277
Query: 501 RFGEIIRSRVFNQYLFRLKIKEELYGDEQRV--KITVIRADQVNYSSESRYLLDLISKSF 558
++ +I+ +YL +K+ E + DE +++ + +N S+E+R L+ S
Sbjct: 278 QYNKIVMGVQNCEYLLEVKLNLEAFSDESETLPMFIIVKVESLNPSAENRPLVRRTSVGM 337
Query: 559 R 559
R
Sbjct: 338 R 338
>gi|147857506|emb|CAN80780.1| hypothetical protein VITISV_011466 [Vitis vinifera]
Length = 280
Score = 135 bits (340), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 95/315 (30%), Positives = 159/315 (50%), Gaps = 58/315 (18%)
Query: 250 VDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVD 309
V V G+V SV+P++ I RK+ + ++ ++ ++LW D GQ+L + D
Sbjct: 11 VYVSGVVQSVSPTMRIRRKSHNDIKKTVV-----------VSLWNDHATNVGQELLDNAD 59
Query: 310 VGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISR 369
FP++++KS K + A +L W+DS K A+ SI
Sbjct: 60 K--FPIVAIKSLKXH---------------------ANKKKLISWYDSECKGASMASIGS 96
Query: 370 EIA---AGGAKNEIHKTVSQ---IKNEGLGRSEKPDWVTVRAFITFIKSD-SFCYTACPL 422
+I+ GG ++ + VS N LG +KP + ++RA+I+FIK D + Y AC
Sbjct: 97 DISPSSKGGVRSMYYDRVSLSHVTSNPSLGE-DKPSFFSIRAYISFIKPDQTMWYRAC-- 153
Query: 423 MIGDRQCNKKVTQS-GNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEI 481
+ CNKKVT + G+ + C+ C + DEC RY++ ++ D +G W++ F + E I
Sbjct: 154 ----KTCNKKVTDAIGSEYWCEGCQKNDDECSLRYIMVVKVSDASGEAWLSLFNDQAERI 209
Query: 482 LGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQV 541
GC A EL LK + ++ ++ LFR+ + + Y +E+R +IT V
Sbjct: 210 FGCSADELDKLK---------SQKLKEAIWVPQLFRISVAQHEYMNEKRQRITARAVVPV 260
Query: 542 NYSSESRYLLDLISK 556
++++ESR LL+ ISK
Sbjct: 261 DFAAESRLLLEEISK 275
>gi|237836603|ref|XP_002367599.1| replication factor-A C terminal domain-containing protein
[Toxoplasma gondii ME49]
gi|211965263|gb|EEB00459.1| replication factor-A C terminal domain-containing protein
[Toxoplasma gondii ME49]
Length = 732
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 129/482 (26%), Positives = 211/482 (43%), Gaps = 75/482 (15%)
Query: 118 IAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRF 177
+ LNPY RW +K RV + DL NAR + F+ DL D+ G IR + + +
Sbjct: 238 LKTLNPYVVRWRLKVRVVERTDLMSTKNAR---QFFTADLKDASGEVIRAVFWGDAAEHW 294
Query: 178 YEIIEVGRVYLISKGSLKPAQKNFNHLKNEWE-IFLEATSTVDLCTEEDDSIP---KQQF 233
+++ G+VY +SKG ++ A K FN + +++E +F + ++ E D S K
Sbjct: 295 SPVLKQGKVYQMSKGRVQVANKRFNTVGHQYELVFYRDSEITEVADEGDISTARKLKALM 354
Query: 234 SFRHISEIESAENNSIVDVIGIVISVNPSVPIL-RKNGMETQRRILNLKDTSGRSVELTL 292
S R I+E + E DV+ +V+ P ++ +K G E +RR + + D S +E++L
Sbjct: 355 SLRDIAESKR-ELPFFADVLVVVVESQPVTSVVSKKTGEEFKRRNVKVVDRSQYEMEISL 413
Query: 293 WGDFCNK-EGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHEL 351
WG+ + EG L +V V + G+ +GK + S Q F D ++ L
Sbjct: 414 WGNQVDALEGVSLPRVVAFTGLQVREWQGGR-QASTGKGGEILTSLQSFAGAD-KDSQTL 471
Query: 352 REWFDSGGKNAATVSISR----EIAAGGA--KNEI-HKTVSQIK---------------- 388
+W+ + S+SR E+ GA K + K V +IK
Sbjct: 472 LQWYKENSGSVRFASMSRSGTGEMGGAGALEKRRVEEKCVDEIKQMTDGAFSFIGQIRRV 531
Query: 389 -------NEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSG-NRW 440
+ G R + A I Y AC C KK+ ++G +
Sbjct: 532 YWRARRRDAGEDRDRQMGTSGADAQQAVIM-----YPACS------SCRKKLVENGEGDY 580
Query: 441 QCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELY---------M 491
C C++ + D+RY+L D T + F + EE+LG PA EL +
Sbjct: 581 TCYACDKPHAQADWRYMLMVNFVDHTSNITIRCFADQAEELLGVPANELQTWSLKEKEKL 640
Query: 492 LKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLL 551
L L DV F +IR+RV E+Y E+RV+ T I+ ++++ + +R L+
Sbjct: 641 LDCLLPLDVYFRVVIRARV------------EMYNGEERVQRTAIKIEKLSPAETARRLV 688
Query: 552 DL 553
L
Sbjct: 689 AL 690
>gi|123477451|ref|XP_001321893.1| OB-fold nucleic acid binding domain containing protein [Trichomonas
vaginalis G3]
gi|121904728|gb|EAY09670.1| OB-fold nucleic acid binding domain containing protein [Trichomonas
vaginalis G3]
Length = 568
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 108/446 (24%), Positives = 205/446 (45%), Gaps = 23/446 (5%)
Query: 118 IAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRF 177
+ L+PY W+IKARVT K ++ + G + FS L D+ G EI ++ ++RF
Sbjct: 140 LTDLSPYILNWSIKARVTRKSPIKTFRAVNGQRRSFSVVLKDTTGTEIEAVFYDGDLERF 199
Query: 178 YEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRH 237
Y+++ + VY S G + + + N++ I + + + + D I +++
Sbjct: 200 YDLLVLENVYCFSNGIVVQNSNKYGYTANDYTIKFGSRAKIIEVPDLGD-IGFLSYNYMK 258
Query: 238 ISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFC 297
+++I IVD +G+V + P I K +R + L D S ++LTLW D
Sbjct: 259 LADI-VVHKPKIVDFLGVVTQIYPVEKIDSKYRTNISKRSVELCDQSNLLIDLTLWDD-- 315
Query: 298 NKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDS 357
+ + G F VLS+K +++ + G S+ + +T + NP LR+WF++
Sbjct: 316 -----QADNFPENGKF-VLSLKGARISTYRGVSLTALSTTLIDTNPSGEMPDNLRKWFEN 369
Query: 358 GGKNAATV-SISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFC 416
+ + +SR ++ K SQ+ + G S + + I+ I+ +C
Sbjct: 370 AKSSVMDMEKVSRSGTFASPLLDL-KEASQVYDSFKGESFYHSFCGMVIDISVIRKLYYC 428
Query: 417 YTACPLMIGDRQCNKKVTQS--GNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAF 474
ACP + C K S + + C+RC+Q ++ +RY I D TG V+
Sbjct: 429 --ACP----NPHCRGKGLYSPEPDLYLCERCHQRVEHPRHRYAFSMVIADHTGSIRVSLL 482
Query: 475 QES--GEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVK 532
GE+I+G + +L D++ ++ FN + +L+ K + + E RVK
Sbjct: 483 GNDILGEKIIGRKIDDWVQETKDLT-DIQIRTLLCPVFFNFFKLKLRTKLDTFNAETRVK 541
Query: 533 ITVIRADQVNYSSESRYLLDLISKSF 558
+V + D++++ + + ++I+ F
Sbjct: 542 TSVFQGDRLSFGDAALQIANIINSKF 567
>gi|339232622|ref|XP_003381428.1| replication protein ADNA-binding subunit [Trichinella spiralis]
gi|316979779|gb|EFV62518.1| replication protein ADNA-binding subunit [Trichinella spiralis]
Length = 337
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 91/335 (27%), Positives = 157/335 (46%), Gaps = 64/335 (19%)
Query: 127 RWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRV 186
RW I+ARVT K D+R ++N RGDGK+FS DL+D + GEIR T FN DR + +++ +V
Sbjct: 34 RWCIRARVTRKTDIRNWSNKRGDGKLFSVDLMD-ESGEIRATAFNQECDRLFSVLQPKQV 92
Query: 187 YLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEED-DSIPKQQFSFRHISEIESAE 245
YLI G +K A + F + N++E+ + + V+ C +E+ +P F F EI
Sbjct: 93 YLIRGGIIKVANRQFTSIDNDYELAFSSETQVEPCKDENVHKLPLLSFRFVKFDEIPRTN 152
Query: 246 NNSIVDVIGIVISVNP-SVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKL 304
++D++G+V + + R + E +R L L D + ++ LTLWG+ E +
Sbjct: 153 RKQLIDILGVVEKIGELEHKVARASQRELLKRDLFLIDDTKTAITLTLWGN----EAENF 208
Query: 305 QEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAAT 364
++ P+++VK +++DF G KN
Sbjct: 209 KQ----HGHPIIAVKGVRISDF-------------------------------GDKNLVP 233
Query: 365 VSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMI 424
V+++ K E +G + ++ V + +I ++ Y ACP
Sbjct: 234 VALAD---------------PNRKTEAVG--DNAEYFNVSGSVMYISRENCMYPACP--- 273
Query: 425 GDRQCNKKVTQ-SGNRWQCDRCNQEIDECDYRYLL 458
CNKK+ + ++C++CN++ +R LL
Sbjct: 274 -SPDCNKKIADLNTGLYRCEKCNKDFPSFKWRLLL 307
>gi|302804959|ref|XP_002984231.1| hypothetical protein SELMODRAFT_423315 [Selaginella moellendorffii]
gi|300148080|gb|EFJ14741.1| hypothetical protein SELMODRAFT_423315 [Selaginella moellendorffii]
Length = 241
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/226 (32%), Positives = 120/226 (53%), Gaps = 10/226 (4%)
Query: 274 QRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGT 333
++R L L D SG SV+L LW +E +QE +D G P++ VK GKV+D++GKS+
Sbjct: 2 KKRTLCLGDDSGHSVDLCLWDLKAEEESSYIQERIDSGVQPIICVKGGKVSDYNGKSLSA 61
Query: 334 IPSTQLFINPDFAEAHELREW----FDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKN 389
I + + I P+ +LREW ++ + S SR+ + T+S+I N
Sbjct: 62 IGVSTILIEPEMEAVADLREWMTLYYNITNFIHLSTSSSRQTVSCTT------TLSEISN 115
Query: 390 EGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEI 449
L + V A + +K++ F Y AC ++ QC KK +++ + W C CN E
Sbjct: 116 MQLKVLKSSPIYRVIATVKEMKTNEFYYNACINVMNAWQCGKKTSRTADGWFCSYCNIES 175
Query: 450 DECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYE 495
+++Y L+ I+D + W AFQE+ +EI+G PAK+L ++ E
Sbjct: 176 ANMEFKYALKMCIEDSSSHVWAIAFQEAAQEIVGIPAKKLATMRDE 221
>gi|221483976|gb|EEE22280.1| replication factor, putative [Toxoplasma gondii GT1]
Length = 726
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 126/482 (26%), Positives = 206/482 (42%), Gaps = 75/482 (15%)
Query: 118 IAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRF 177
+ LNPY RW +K RV + DL NAR + F+ DL D+ G IR + + +
Sbjct: 232 LKTLNPYVVRWCLKVRVVERTDLMSTKNAR---QFFTADLKDASGEVIRAVFWGDAAEHW 288
Query: 178 YEIIEVGRVYLISKGSLKPAQKNFNHLKNEWE-IFLEATSTVDLCTEEDDSIP---KQQF 233
+++ G+VY +SKG ++ A K FN + +++E +F + ++ E D S K
Sbjct: 289 SPVLKQGKVYQMSKGRVQVANKRFNTVGHQYELVFYRDSEITEVADEGDISTARKLKALM 348
Query: 234 SFRHISEIESAENNSIVDVIGIVISVNPSVPIL-RKNGMETQRRILNLKDTSGRSVELTL 292
S R I+E E DV+ +V+ P ++ +K G E +RR + + D S +E++L
Sbjct: 349 SLRDIAE-SKRELPFFADVLVVVVESQPVTSVVSKKTGEEFKRRNVKVVDRSQYEMEISL 407
Query: 293 WGDFCNK-EGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHEL 351
WG+ + EG L +V V + G+ +GK + S Q F D ++ L
Sbjct: 408 WGNQVDALEGVSLPRVVAFTGLQVREWQGGR-QASTGKGSEILTSLQSFAGAD-KDSQSL 465
Query: 352 REWFDSGGKNAATVSISR-------EIAAGGAKNEIHKTVSQIK---------------- 388
+W+ + S+SR A + K V +IK
Sbjct: 466 LQWYKENSGSVRFASMSRGGTGEMGGAGALEKRRVEEKCVDEIKQMTDGAFSFIGQIRRV 525
Query: 389 -------NEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSG-NRW 440
+ G R + A I Y AC C KK+ ++G +
Sbjct: 526 YWRARRRDTGEDRDRQMGTSGADAQQAVIM-----YPACS------SCRKKLVENGEGDY 574
Query: 441 QCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELY---------M 491
C C++ + D+RY+L D T + F + EE+LG PA EL +
Sbjct: 575 TCYACDKPHAQADWRYMLMVNFVDHTSNITIRCFADQAEELLGVPANELQTWSLKEKEKL 634
Query: 492 LKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLL 551
L L DV F +IR+RV E+Y E+RV+ T I+ ++++ + +R L+
Sbjct: 635 LDCLLPLDVYFRVVIRARV------------EMYNGEERVQRTAIKIEKLSPAETARRLV 682
Query: 552 DL 553
L
Sbjct: 683 AL 684
>gi|221505253|gb|EEE30907.1| replication factor, putative [Toxoplasma gondii VEG]
Length = 726
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 126/482 (26%), Positives = 207/482 (42%), Gaps = 75/482 (15%)
Query: 118 IAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRF 177
+ LNPY RW +K RV + DL NAR + F+ DL D+ G IR + + +
Sbjct: 232 LKTLNPYVVRWCLKVRVVERTDLMSTKNAR---QFFTADLKDASGEVIRAVFWGDAAEHW 288
Query: 178 YEIIEVGRVYLISKGSLKPAQKNFNHLKNEWE-IFLEATSTVDLCTEEDDSIP---KQQF 233
+++ G+VY +SKG ++ A K FN + +++E +F + ++ E D S K
Sbjct: 289 SPVLKQGKVYQMSKGRVQVANKRFNTVGHQYELVFYRDSEITEVADEGDISTARKLKALM 348
Query: 234 SFRHISEIESAENNSIVDVIGIVISVNPSVPIL-RKNGMETQRRILNLKDTSGRSVELTL 292
S R I+E + E DV+ +V+ P ++ +K G E +RR + + D S +E++L
Sbjct: 349 SLRDIAESKR-ELPFFADVLVVVVESQPVTSVVSKKTGEEFKRRNVKVVDRSQYEMEISL 407
Query: 293 WGDFCNK-EGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHEL 351
WG+ + EG L +V V + G+ +GK + S Q F D ++ L
Sbjct: 408 WGNQVDALEGVSLPRVVAFTGLQVREWQGGR-QASTGKGSEILTSLQSFAGAD-KDSQSL 465
Query: 352 REWFDSGGKNAATVSISR-------EIAAGGAKNEIHKTVSQIK---------------- 388
+W+ + S+SR A + K V +IK
Sbjct: 466 LQWYKENSGSVRFASMSRGGTGEMGGAGALEKRRVEEKCVDEIKQMTDGAFSFIGQIRRV 525
Query: 389 -------NEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSG-NRW 440
+ G R + A I Y AC C KK+ ++G +
Sbjct: 526 YWRARRRDAGEDRDRQMGTSGADAQQAVIM-----YPACS------SCRKKLVENGEGDY 574
Query: 441 QCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELY---------M 491
C C++ + D+RY+L D T + F + EE+LG PA EL +
Sbjct: 575 TCYACDKPHAQADWRYMLMVNFVDHTSNITIRCFADQAEELLGVPANELQTWSLKEKEKL 634
Query: 492 LKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLL 551
L L DV F +IR+RV E+Y E+RV+ T I+ ++++ + +R L+
Sbjct: 635 LDCLLPLDVYFRVVIRARV------------EMYNGEERVQRTAIKIEKLSPAETARRLV 682
Query: 552 DL 553
L
Sbjct: 683 AL 684
>gi|401405941|ref|XP_003882420.1| replication factor-A C terminal domain-containing protein [Neospora
caninum Liverpool]
gi|325116835|emb|CBZ52388.1| replication factor-A C terminal domain-containing protein [Neospora
caninum Liverpool]
Length = 515
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 128/487 (26%), Positives = 212/487 (43%), Gaps = 84/487 (17%)
Query: 118 IAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRF 177
+ LNPY RW +K RV + DL NAR + F+ DL D+ G IR + +++
Sbjct: 17 LKTLNPYVVRWCLKVRVVERTDLISTKNAR---QFFTADLKDASGEVIRAVFWGDAAEQW 73
Query: 178 YEIIEVGRVYLISKGSLKPAQKNFNHLKNEWE-IFLEATSTVDLCTEEDDSIP---KQQF 233
+++ G+VY +SKG ++ A K FN + +++E +F + V++ E D S K
Sbjct: 74 SPVLKQGKVYQMSKGRVQVANKRFNTVGHQYELVFYRDSEIVEVPDEGDISTARKLKALM 133
Query: 234 SFRHISEIESAENNSIVDVIGIVISVNPSVPIL-RKNGMETQRRILNLKDTSGRSVELTL 292
S R I+E E DV+ +V+ P ++ +K G E +RR + + D S +E++L
Sbjct: 134 SLRDIAE-SKREVPFFADVLVVVVESQPITSVVSKKTGEEFKRRNVKVVDRSQYEMEISL 192
Query: 293 WGDFCNK-EGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHEL 351
WG+ + EG L +V V + G+ +GK + S Q F + ++ L
Sbjct: 193 WGNQVDALEGVSLPRVVAFTGLQVREWQGGR-QASTGKGSEILTSLQAFAGAE-KDSQSL 250
Query: 352 REWFDSGGKNAATVSISR----EIAAGGA--KNEI-HKTVSQIKNEGLGRSEKPDWVTVR 404
+W+ S+SR ++ A G+ K + K + +IK + G
Sbjct: 251 LQWYKENSGTIRFASMSRSGPGDLGAAGSLEKRRVEEKCIDEIKQKTDG---------AF 301
Query: 405 AFITFI----------------------------KSDSFCYTACPLMIGDRQCNKKVTQS 436
+FI I + Y AC C KK+ ++
Sbjct: 302 SFIGQIRRVYWRARRRGDEDRDRPMGGSQGAPDPQQAVIMYPACS------SCRKKLVEN 355
Query: 437 G-NRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYML--- 492
G + C C++ + D+RY+L D T V F + EE+LG PA EL
Sbjct: 356 GEGDYTCYACDKSHAQADWRYMLMVNFVDHTSNVAVRCFADQAEELLGVPANELQTWPLK 415
Query: 493 -KYELQD-----DVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSE 546
K +L D DV F +IR+RV E Y E+RV+ T I+ ++++
Sbjct: 416 DKEKLMDCLLPLDVYFRVVIRARV------------ETYNGEERVQRTAIKIEKLSPVEA 463
Query: 547 SRYLLDL 553
+R L+ +
Sbjct: 464 ARRLVTM 470
>gi|393910678|gb|EJD75993.1| replication factor a 1 [Loa loa]
Length = 580
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 111/408 (27%), Positives = 186/408 (45%), Gaps = 55/408 (13%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
+ PI L PY W + +VT+ ++R RG +FSF +D G EIRV+ F +
Sbjct: 169 VTPIKLLTPYCKNWRLCIKVTSVDEIR---CIRGQ-HIFSFLAVDDGGVEIRVSAFGDIA 224
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSI-PKQQF 233
R +I ++Y I++ S+K A + ++ +++ E+ L S V CT+ + PK F
Sbjct: 225 CRTATLICPEQMYYITRASVKMANRRYSRNEHDMEVVLRPDSEVTKCTDRPYILSPKVNF 284
Query: 234 SFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLW 293
F I +++ + I E Q+R + + D SG V + LW
Sbjct: 285 EFVRIHNLQNFIDTEI---------------------EELQKREIQVVDDSGYYVAINLW 323
Query: 294 GDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGK-SIGTIPSTQLFINPDFAEAHELR 352
GQK + + + VL+VK V F G S+ ++ S++L +P F EA LR
Sbjct: 324 -------GQKAKMFPNEQYQHVLAVKRLLVRCFQGTISLVSLASSKLLHDPHFPEADALR 376
Query: 353 EWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKS 412
W+ K+ S+++ + HK + Q+K G + + A I+ I +
Sbjct: 377 FWYSENRKSFKPASMNQ-----VSSFHEHKWIKQLKPSLDGH-----FFNLTAMISSIFT 426
Query: 413 DSFCYTACPLMIGDRQCNKK--VTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTW 470
++ Y CP C KK V + + + C +C +E Y Y L ++ D TG
Sbjct: 427 ENAVYKGCP------TCKKKLLVEKDNDLYICSKCGI-CNEYKYYYTLHMELFDFTGTVH 479
Query: 471 VTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRL 518
VTAF + ++++G A E+ K+ D R+ +S +F Y+FRL
Sbjct: 480 VTAFDDCAQKLIGEQADEV--AKFLKFDSERYQSSFKSVLFKPYMFRL 525
>gi|5326840|gb|AAD42062.1|AF132307_1 replication protein A large subunit [Cryptosporidium parvum]
Length = 473
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 119/475 (25%), Positives = 223/475 (46%), Gaps = 57/475 (12%)
Query: 116 IPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVD 175
+PI +N + +IK R+ K L+ + + F D++D D IRV + +
Sbjct: 1 MPIREVNVNRQTISIKGRIIQKSSLQILKSGL---RFFHLDIIDKDNDVIRVKFWRXKAE 57
Query: 176 RFYEIIEVGRVYLI--SKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQ-Q 232
++ I++ G VY++ + + + FN N +EI V +DDSI K +
Sbjct: 58 EYHNILQHGSVYILKCTGNDVVVSNTKFNDTSNPYEINFSDRCFVRKVENDDDSIGKAPK 117
Query: 233 FSFRHISEIESAENNSIVDVIGIVISVNPSVPIL-RKNGMETQRRILNLKDTSGRSVELT 291
+ F + +I SIVD+IGIV +PS ++ RKN E RR +++ D +G + +T
Sbjct: 118 YVFTTVKDIREIPVPSIVDLIGIVRHFSPSTKVISRKNNDEVSRRTISVVDKTGFLINIT 177
Query: 292 LWGDFCNKEGQKLQEMVDVGFF--PVLSVKSGKVNDFSGKSIGTIPS-TQLFINPDFAEA 348
LWG+ L E+ D F PV+++KS ++ ++ G+ T+ + + + D +
Sbjct: 178 LWGE--------LAEVSDEKFLGNPVVALKSIQIREYQGRQGSTLNGRSNMEFSIDDGKM 229
Query: 349 HELREWFDSGGKNAATVSISREIAAGGAKN-----EIH--KTVSQIKN------------ 389
ELR+W+DS G + SIS + N +++ +T+ I+N
Sbjct: 230 EELRDWYDSIGSSIKFESISNISSNESPNNFRVNDKLYSGRTLKDIRNRMEDNEFSSTPS 289
Query: 390 -EGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQE 448
+ + R K + V ++ K S Y ACP+ C KKV S + C++C++
Sbjct: 290 FQVIARISKIGSINVNQQVSGDKGGSLTYDACPI------CKKKVLFSTS--YCEKCDES 341
Query: 449 IDECDYRYLLQAQIQDQTGLTWVTAFQESG----EEILGCPAKELYMLKYELQDDVRFGE 504
+ + ++L I+D T V F E G +E+ KE+ E +D +
Sbjct: 342 VVP-ETKFLFPVTIEDHTCSLTVQCFHEIGSTFIKELSASACKEM-----EQNNDKKLNF 395
Query: 505 IIRSR-VFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKSF 558
I+ + ++ Y ++++K E Y ++++ + + A+ ++ + S +L+ IS+S
Sbjct: 396 ILNLQCMWRHYNLKIQLKAEEYNNQKKTRAIIQSAEPIDLNQISYLMLESISQSI 450
>gi|66359222|ref|XP_626789.1| replication protein A1 large subunit [Cryptosporidium parvum Iowa
II]
gi|46228369|gb|EAK89268.1| replication protein A1 large subunit [Cryptosporidium parvum Iowa
II]
Length = 484
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 119/474 (25%), Positives = 223/474 (47%), Gaps = 57/474 (12%)
Query: 116 IPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVD 175
+PI +N + +IK R+ K L+ + + F D++D D IRV + +
Sbjct: 12 MPIREVNVNRQTISIKGRIIQKSSLQILKSGL---RFFHLDIIDKDNDVIRVKFWRQKAE 68
Query: 176 RFYEIIEVGRVYLI--SKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQ-Q 232
++ I++ G VY++ + + + FN N +EI V +DDSI K +
Sbjct: 69 EYHNILQHGSVYILKCTGNDVVVSNTKFNDTSNPYEINFSDRCFVRKVENDDDSIGKAPK 128
Query: 233 FSFRHISEIESAENNSIVDVIGIVISVNPSVPIL-RKNGMETQRRILNLKDTSGRSVELT 291
+ F + +I SIVD+IGIV +PS ++ RKN E RR +++ D +G + +T
Sbjct: 129 YVFTTVKDIREIPVPSIVDLIGIVRHFSPSTKVISRKNNDEVSRRTISVVDKTGFLINIT 188
Query: 292 LWGDFCNKEGQKLQEMVDVGFF--PVLSVKSGKVNDFSGKSIGTIPS-TQLFINPDFAEA 348
LWG+ L E+ D F PV+++KS ++ ++ G+ T+ + + + D +
Sbjct: 189 LWGE--------LAEVSDEKFLGNPVVALKSIQIREYQGRQGSTLNGRSNMEFSIDDGKM 240
Query: 349 HELREWFDSGGKNAATVSISREIAAGGAKN-----EIH--KTVSQIKN------------ 389
ELR+W+DS G + SIS + N +++ +T+ I+N
Sbjct: 241 EELRDWYDSIGSSIKFESISNISSNESPNNFRVNDKLYSGRTLKDIRNRMEDNEFSSTPS 300
Query: 390 -EGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQE 448
+ + R K + V ++ K S Y ACP+ C KKV S + C++C++
Sbjct: 301 FQVIARISKIGSINVNQQVSGDKGGSLTYDACPI------CKKKVLFSTS--YCEKCDES 352
Query: 449 IDECDYRYLLQAQIQDQTGLTWVTAFQESG----EEILGCPAKELYMLKYELQDDVRFGE 504
+ + ++L I+D T V F E G +E+ KE+ E +D +
Sbjct: 353 VVP-ETKFLFPVTIEDHTCSLTVQCFHEIGSTFIKELSASACKEM-----EQNNDKKLNF 406
Query: 505 IIRSR-VFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKS 557
I+ + ++ Y ++++K E Y ++++ + + A+ ++ + S +L+ IS+S
Sbjct: 407 ILNLQCMWRHYNLKIQLKAEEYNNQKKTRAIIQSAEPIDLNQISYLMLESISQS 460
>gi|67615068|ref|XP_667409.1| replication protein A large subunit [Cryptosporidium hominis TU502]
gi|54658542|gb|EAL37178.1| replication protein A large subunit [Cryptosporidium hominis]
Length = 473
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 119/475 (25%), Positives = 223/475 (46%), Gaps = 57/475 (12%)
Query: 116 IPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVD 175
+PI +N + +IK R+ K L+ + + F D++D D IRV + +
Sbjct: 1 MPIREVNVNRQTISIKGRIIQKSSLQILKSGL---RFFHLDIIDKDNDVIRVKFWRQKAE 57
Query: 176 RFYEIIEVGRVYLI--SKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQ-Q 232
++ I++ G VY++ + + + FN N +EI V +DDSI K +
Sbjct: 58 EYHNILQHGSVYILKCTGNDVVVSNTKFNDTSNPYEINFSDRCFVRKVENDDDSIGKAPK 117
Query: 233 FSFRHISEIESAENNSIVDVIGIVISVNPSVPIL-RKNGMETQRRILNLKDTSGRSVELT 291
+ F + +I SIVD+IGIV +PS ++ RKN E RR +++ D +G + +T
Sbjct: 118 YVFSTVKDIREIPVPSIVDLIGIVRHFSPSTKVISRKNNDEVSRRTISVVDKTGFLINIT 177
Query: 292 LWGDFCNKEGQKLQEMVDVGFF--PVLSVKSGKVNDFSGKSIGTIPS-TQLFINPDFAEA 348
LWG+ L E+ D F PV+++KS ++ ++ G+ T+ + + + D +
Sbjct: 178 LWGE--------LAEVSDEKFLGNPVVALKSIQIREYQGRQGSTLNGRSNMEFSIDDGKM 229
Query: 349 HELREWFDSGGKNAATVSISREIAAGGAKN-----EIH--KTVSQIKN------------ 389
ELR+W+DS G + SIS + N +++ +T+ I+N
Sbjct: 230 EELRDWYDSIGSSIKFESISNISSNESPNNFRVNDKLYSGRTLKDIRNRMEDNEFSSTQS 289
Query: 390 -EGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQE 448
+ + R K + V ++ K S Y ACP+ C KKV S + C++C++
Sbjct: 290 FQVIARISKIGSINVNQQVSGDKGGSLTYDACPI------CKKKVLFSTS--YCEKCDES 341
Query: 449 IDECDYRYLLQAQIQDQTGLTWVTAFQESG----EEILGCPAKELYMLKYELQDDVRFGE 504
+ + ++L I+D T V F E G +E+ KE+ E +D +
Sbjct: 342 VVP-ETKFLFPVTIEDHTCSLTVQCFHEIGSTFIKELSASACKEM-----EQNNDKKLNF 395
Query: 505 IIRSR-VFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKSF 558
I+ + ++ Y ++++K E Y ++++ + + A+ ++ + S +L+ IS+S
Sbjct: 396 ILNLQCMWRHYNLKIQLKAEEYNNQKKTRAIIQSAEPIDLNQISYLMLESISQSI 450
>gi|407037414|gb|EKE38631.1| replication factor A protein 1, putative [Entamoeba nuttalli P19]
Length = 588
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 120/459 (26%), Positives = 198/459 (43%), Gaps = 49/459 (10%)
Query: 97 PPNFRNHGPILKNEA-PA-----RIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDG 150
P R P+ +A PA +I P + L + + IK RV +K D +Y G
Sbjct: 122 APIVRTGVPVSHQQAAPADLSKGKITPFSLLTTFGSKLIIKGRVVSKNDKFKY----AKG 177
Query: 151 KVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEI 210
+FSF L D DG EI+ TCFN V D ++ I+VG Y I+K K Q N ++ I
Sbjct: 178 NLFSFVLQDKDGAEIKATCFNDVCDEKFDQIKVGETYYITKADYK--QSNGKGYRSAKMI 235
Query: 211 FLEA-TSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKN 269
L+ + + D +P S I+++ + ++ D+ ++ P KN
Sbjct: 236 DLDMIIGKYTIIQKSSDEVPMIS-SIVPIADLVESPVDATYDICAFLVDKGPEQT--YKN 292
Query: 270 GMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGK 329
E + L D S +VE+ W N++ K ++M + G VL+ S K+ +F K
Sbjct: 293 --EKAKVTLTFMDQSSYAVEVDFW----NEDIDKTKDMEN-GVVYVLT--SLKLKEFKYK 343
Query: 330 SIGTIPSTQLFINPD------------FAEAHELREWFDSGGKNAATVSISREIAAGGAK 377
++ +T++ N D F + H E + E +G +
Sbjct: 344 TLTVTKATKILSNTDIEQYDEASLVNKFIQEHTTPEGITVSDLRYLANETTVEFKSGDVR 403
Query: 378 NEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDS-FCYTACPLMIGDRQCNKKVTQS 436
+ E + + V + T K D+ FCY +CP C KK+ +
Sbjct: 404 TADQLYCLRKLEEKTSETSEDVKANVYGYFTMFKVDNGFCYLSCP------DCKKKIVE- 456
Query: 437 GNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYEL 496
G+ + C++C ++I R++++A I D T WVT F E ++I+G A E+Y +
Sbjct: 457 GSTF-CEKCQKDIQPM-RRFIVRASIADSTSSIWVTIFDEEMKKIIGKSADEMYEINE-- 512
Query: 497 QDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITV 535
QD F + + F + F L K++ Y E R + TV
Sbjct: 513 QDSELFENLFKQLTFIECRFHLICKKDEYNGETRTRFTV 551
>gi|167376383|ref|XP_001733974.1| replication protein A 70 kDa DNA-binding subunit [Entamoeba dispar
SAW760]
gi|165904711|gb|EDR29890.1| replication protein A 70 kDa DNA-binding subunit, putative
[Entamoeba dispar SAW760]
Length = 588
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 117/444 (26%), Positives = 192/444 (43%), Gaps = 48/444 (10%)
Query: 111 APA-----RIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEI 165
APA ++ P + L + + IK RV +K D +Y G +FSF L D DG EI
Sbjct: 137 APADLSKGKVTPFSLLTTFGSKLIIKGRVVSKNDKFKY----AKGNLFSFVLQDKDGAEI 192
Query: 166 RVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEA-TSTVDLCTEE 224
+ TCFN V D ++ I+VG Y I+K K Q N ++ I L+ + +
Sbjct: 193 KATCFNDVCDEKFDQIKVGETYYITKADYK--QSNGKGYRSAKMIDLDMIIGKYTIIQKS 250
Query: 225 DDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTS 284
D +P S I+++ + ++ D+ ++ P KN E + L D S
Sbjct: 251 SDEVPMIS-SIVPIADLVESPVDATYDICAFLVDKGPEQT--YKN--EKAKVTLTFMDQS 305
Query: 285 GRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPD 344
+VE+ W N++ K ++M + G VL+ S ++ +F K++ +T++ N D
Sbjct: 306 SYAVEVDFW----NEDIDKTKDMEN-GVVYVLT--SLRLREFKYKTLTVTKATKILSNTD 358
Query: 345 ------------FAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGL 392
F + H E + E AG + + E
Sbjct: 359 IEQYDEASLVNKFIQEHTTTEGITVSDLRYLANETTVEFKAGDVRTADQLYCLRKLEEKT 418
Query: 393 GRSEKPDWVTVRAFITFIKSDS-FCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDE 451
+ + V + T K DS FCY +CP C KK+ G+ + C++C ++I
Sbjct: 419 TETSEDVKANVYGYFTMFKVDSGFCYLSCP------DCKKKIA-DGSTF-CEKCQKDIQP 470
Query: 452 CDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVF 511
R++++A I D T WVT F E ++I+G A E+Y + QD F + + F
Sbjct: 471 M-RRFIVRASIADSTSSVWVTIFDEEMKKIIGKSADEMYEMNE--QDSESFENLFKQLTF 527
Query: 512 NQYLFRLKIKEELYGDEQRVKITV 535
+ F L K++ Y E R + TV
Sbjct: 528 IECRFHLVCKKDEYNGETRTRYTV 551
>gi|67468384|ref|XP_650233.1| replication factor A protein 1 [Entamoeba histolytica HM-1:IMSS]
gi|56466826|gb|EAL44846.1| replication factor A protein 1, putative [Entamoeba histolytica
HM-1:IMSS]
Length = 588
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 120/459 (26%), Positives = 198/459 (43%), Gaps = 49/459 (10%)
Query: 97 PPNFRNHGPILKNEA-PA-----RIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDG 150
P R P+ +A PA +I P + L + + IK RV +K D +Y G
Sbjct: 122 APIVRTGVPVSHQQAAPADLSKGKITPFSLLTTFGSKLIIKGRVVSKNDKFKY----AKG 177
Query: 151 KVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEI 210
+FSF L D DG EI+ TCFN V D ++ I+VG Y I+K K Q N ++ I
Sbjct: 178 NLFSFVLQDKDGAEIKATCFNDVCDEKFDQIKVGETYYITKADYK--QSNGKGYRSAKMI 235
Query: 211 FLEA-TSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKN 269
L+ + + D +P S I+++ + ++ D+ ++ P KN
Sbjct: 236 DLDMIIGKYTIIQKSSDEVPMIS-SIVPIADLVESPVDATYDICAFLVDKGPEQT--YKN 292
Query: 270 GMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGK 329
E + L D S +VE+ W N++ K ++M + G VL+ S K+ +F K
Sbjct: 293 --EKAKVTLTFMDQSSYAVEVDFW----NEDIDKTKDMEN-GVVYVLT--SLKLKEFKYK 343
Query: 330 SIGTIPSTQLFINPD------------FAEAHELREWFDSGGKNAATVSISREIAAGGAK 377
++ +T++ N D F + H E + E +G +
Sbjct: 344 TLTVTKATKILSNTDIEQYDEASLVNKFIQEHTTPEGITVSDLRYLANETTVEFKSGDIR 403
Query: 378 NEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDS-FCYTACPLMIGDRQCNKKVTQS 436
+ E + + V + T K D+ FCY +CP C KK+ +
Sbjct: 404 TADQLYCLRKLEEKTSETSEDVKANVYGYFTMFKVDNGFCYLSCP------DCKKKIVE- 456
Query: 437 GNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYEL 496
G+ + C++C ++I R++++A I D T WVT F E ++I+G A E+Y +
Sbjct: 457 GSTF-CEKCQKDIQPM-RRFIVRASIADSTSSIWVTIFDEEMKKIIGKSADEMYEINE-- 512
Query: 497 QDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITV 535
QD F + + F + F L K++ Y E R + TV
Sbjct: 513 QDSELFENLFKQLTFIECRFHLICKKDEYNGETRTRFTV 551
>gi|449705024|gb|EMD45158.1| replication protein 70 kDa DNAbinding subunit, putative [Entamoeba
histolytica KU27]
Length = 588
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 120/459 (26%), Positives = 198/459 (43%), Gaps = 49/459 (10%)
Query: 97 PPNFRNHGPILKNEA-PA-----RIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDG 150
P R P+ +A PA +I P + L + + IK RV +K D +Y G
Sbjct: 122 APIVRTGVPVSHQQAAPADLSKGKITPFSLLTTFGSKLIIKGRVVSKNDKFKY----AKG 177
Query: 151 KVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEI 210
+FSF L D DG EI+ TCFN V D ++ I+VG Y I+K K Q N ++ I
Sbjct: 178 NLFSFVLQDKDGAEIKATCFNDVCDEKFDQIKVGETYYITKADYK--QSNGKGYRSAKMI 235
Query: 211 FLEA-TSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKN 269
L+ + + D +P S I+++ + ++ D+ ++ P KN
Sbjct: 236 DLDMIIGKYTIIQKSSDEVPMIS-SIVPIADLVESPVDATYDICAFLVDKGPEQT--YKN 292
Query: 270 GMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGK 329
E + L D S +VE+ W N++ K ++M + G VL+ S K+ +F K
Sbjct: 293 --EKAKVTLTFMDQSSYAVEVDFW----NEDIDKTKDMEN-GVVYVLT--SLKLKEFKYK 343
Query: 330 SIGTIPSTQLFINPD------------FAEAHELREWFDSGGKNAATVSISREIAAGGAK 377
++ +T++ N D F + H E + E +G +
Sbjct: 344 TLTVTKATKILSNTDIEQYDEASLVNKFIQEHTTPEGITVSDLRYLANETTVEFKSGDIR 403
Query: 378 NEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDS-FCYTACPLMIGDRQCNKKVTQS 436
+ E + + V + T K D+ FCY +CP C KK+ +
Sbjct: 404 IADQLYCLRKLEEKTSETSEDVKANVYGYFTMFKVDNGFCYLSCP------DCKKKIVE- 456
Query: 437 GNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYEL 496
G+ + C++C ++I R++++A I D T WVT F E ++I+G A E+Y +
Sbjct: 457 GSTF-CEKCQKDIQPM-RRFIVRASIADSTSSIWVTIFDEEMKKIIGKSADEMYEINE-- 512
Query: 497 QDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITV 535
QD F + + F + F L K++ Y E R + TV
Sbjct: 513 QDSELFENLFKQLTFIECRFHLICKKDEYNGETRTRFTV 551
>gi|209880341|ref|XP_002141610.1| OB-fold nucleic acid binding domain-containing protein
[Cryptosporidium muris RN66]
gi|209557216|gb|EEA07261.1| OB-fold nucleic acid binding domain-containing protein
[Cryptosporidium muris RN66]
Length = 475
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 119/453 (26%), Positives = 204/453 (45%), Gaps = 47/453 (10%)
Query: 116 IPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVD 175
+PI +N + +K RV K R R D K F DL+D DG I+V + +
Sbjct: 1 MPIREVNVNRQIITLKGRVIEKS--RTLQTLRNDLKFFHIDLIDKDGDTIKVKFWRNKAE 58
Query: 176 RFYEIIEVGRVYLI--SKGSLKPAQKNFNHLKNEWEI-FLEATSTVDLCTEEDDSIPKQ- 231
+Y IE G VY+ + + + FN+ N +EI F E + E D++I K
Sbjct: 59 EYYNKIEQGDVYIFKCTGSDVAVSNARFNNTSNPYEINFSERCKITKV--EHDETISKDP 116
Query: 232 QFSFRHISEIESAENNSIVDVIGIVISVNP-SVPILRKNGMETQRRILNLKDTSGRSVEL 290
Q+ F I +I + VD+IGI+ S +P S I R+N E RR + + D S + +
Sbjct: 117 QYRFLSIKDIRNMNTPCTVDIIGIIKSSSPLSKVISRRNNEEIPRRNIVIVDDSEYQLNV 176
Query: 291 TLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLF-INPDFAEAH 349
TLWGD + + + L PV++ K+ ++ DF GK T+ + N +
Sbjct: 177 TLWGDLASIDDEILSNN------PVVAFKNLQIRDFQGKQGSTLNGRSMIDFNLKNDRMN 230
Query: 350 ELREWFDSGGKNAATVSISREIAAGG----AKNEIHKTVSQIK---NEGLGRSEKPDWVT 402
+++ WF G+ SI+ + K + K++ +++ +E S + V
Sbjct: 231 KVKSWFIEYGQTTKFQSINTTVIQSSNFPMDKLTLEKSLKEVRILMDENSYSSNQTYSVL 290
Query: 403 VR----AFITFI------KSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDEC 452
R F I K S Y ACP +C KKV N C++C++ +
Sbjct: 291 ARISRIGFPNSIGQNISEKKPSLTYDACP------KCKKKVL---NNSYCEKCDESV-IA 340
Query: 453 DYRYLLQAQIQDQTGLTWVTAFQESGEEIL-GCPAKELYMLKYELQDDVRFGEIIRSRVF 511
D +Y+ I+D T V F G +L G + E + EL++DV+ ++ +
Sbjct: 341 DTKYMFPVTIEDYTSSLSVRCFHNIGSIVLSGLESSECKQM--ELRNDVKLNFLLGFKYL 398
Query: 512 NQYL-FRLKIKEELYGDEQRVKITVIRADQVNY 543
QYL R+ ++ E Y ++++ + + A+ +++
Sbjct: 399 WQYLNLRITLRMEEYNNQKKTQAIIQSAEIIDF 431
>gi|297806841|ref|XP_002871304.1| hypothetical protein ARALYDRAFT_908753 [Arabidopsis lyrata subsp.
lyrata]
gi|297317141|gb|EFH47563.1| hypothetical protein ARALYDRAFT_908753 [Arabidopsis lyrata subsp.
lyrata]
Length = 345
Score = 121 bits (304), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 82/255 (32%), Positives = 132/255 (51%), Gaps = 36/255 (14%)
Query: 274 QRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGT 333
+R + L D + ++V ++LW D G +L +M D PV+++KS KV DF
Sbjct: 112 HKRDITLADETKKTVVVSLWNDLATGIGHELLDMAD--NHPVIAIKSLKVGDFQ------ 163
Query: 334 IPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREI---AAGGAKNEIHKTV--SQI- 387
EA +L+ W+D+ GK + +I + A G+++ V S I
Sbjct: 164 -------------EATKLKSWYDAEGKETSMSAIGSGMGSSANNGSRSMYSDRVFLSHIT 210
Query: 388 KNEGLGRSEKPDWVTVRAFITFIKSD-SFCYTACPLMIGDRQCNKKVTQSGNR-WQCDRC 445
N LG EKP + + RA+I+FIK D + Y AC + CNKKVT++ + + C+ C
Sbjct: 211 SNPSLGE-EKPVFFSTRAYISFIKPDQTMWYRAC------KTCNKKVTEAMDSGYWCEGC 263
Query: 446 NQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEI 505
++ EC RY++ ++ D TG TW +AF + E+I+GC A EL LK E + F
Sbjct: 264 LKKDQECSLRYIMAVKVSDSTGETWFSAFNDEAEKIIGCTADELNNLKSEEGEVNEFQTK 323
Query: 506 IRSRVFNQYLFRLKI 520
++ ++ +LFR+ I
Sbjct: 324 VKEATWSSHLFRISI 338
>gi|145545796|ref|XP_001458582.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124426402|emb|CAK91185.1| unnamed protein product [Paramecium tetraurelia]
Length = 730
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 120/453 (26%), Positives = 205/453 (45%), Gaps = 54/453 (11%)
Query: 98 PNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNA-RGDGKVFSFD 156
PN RN+ KN P+ +NP + + RV +++ Y + DGK+F
Sbjct: 292 PNQRNN----KNNPQIDFFPLYQINP-SFQQPFRGRVVKVNEIKSYTTKNQKDGKMFGIQ 346
Query: 157 LLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKN----EWEIFL 212
++D + + F++ ++F++ I GR Y+ S +KPA KN L+ ++
Sbjct: 347 VIDEENL-VSAMFFDSAAEKFHDYIVQGRCYIFSGVLVKPA-KNLEQLQKIGCLPFDYTF 404
Query: 213 EATSTVDLCTEEDD--SIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNG 270
+ S + E DD IP F+F ++ I + SI DV+ ++ S + +KN
Sbjct: 405 DQNSQI---IEIDDVPGIPLNTFNFVKLNSISQQKVGSIQDVVVVIKSSSGVKEFQQKNK 461
Query: 271 METQRRI-LNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSG- 328
E RI L + D S + +E+TL+G + ++ E + KS K+N++ G
Sbjct: 462 DEKSTRIQLGVYDDSLQEIEITLYGHLAQQYPYQVGE--------IYMFKSLKINEYQGR 513
Query: 329 KSIGTIPSTQLFINPDFAEAHELREWFDS-GGKNAATVSISREIAAGGAKNEIHKTVSQI 387
KS+ T + + + E EL+ W + GK A VS K +S++
Sbjct: 514 KSLQNNYQTSIHFDKNQKEVKELQNWLQNFDGKLAEPVSKI-------------KLISEL 560
Query: 388 KNEG----LGRSEKPDWVTVRAFITFIK-SDSFCYTACPLMIGDRQCNKKVTQSGNRWQC 442
NE L ++ K + VRA + +K S + Y +C C KKVT + + C
Sbjct: 561 INESNKCELDQNLKI-YSDVRAQLVLVKNSGTLYYQSCT------NCLKKVTTELDSYFC 613
Query: 443 DRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRF 502
CN + E YRY+L +I D +G WV+ + +++ PA L L E ++ +
Sbjct: 614 SSCNLTLKEPKYRYILNCKIADSSGNIWVSVGDQQANQLIDIPANLLKQLTDEGKEKEK- 672
Query: 503 GEIIRSRVFNQYLFRLKIKEELYGDEQRVKITV 535
E + + ++ F+L K E + D +RVK V
Sbjct: 673 NEALSKSAYKEFRFKLTSKLEEFNDVKRVKHAV 705
>gi|401406884|ref|XP_003882891.1| Replication protein A, 70 kDa DNA-binding subunit, related
[Neospora caninum Liverpool]
gi|325117307|emb|CBZ52859.1| Replication protein A, 70 kDa DNA-binding subunit, related
[Neospora caninum Liverpool]
Length = 621
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/268 (29%), Positives = 143/268 (53%), Gaps = 28/268 (10%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDS-------------- 160
++ I LN Y W I+ RV K DLR + N RG+ +VF+ ++D
Sbjct: 201 LVNIKDLNSYSQDWMIRGRVADKTDLRLFANPRGESQVFAATIIDHLFEVVLGRCYVSPF 260
Query: 161 --DGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTV 218
GEIR + F V ++ +EVGRVY S+G++ A K +N L +E+EI + + +
Sbjct: 261 VCKKGEIRGSFFGGVAAAWHPRLEVGRVYQFSRGTIDTANKKYNSLSHEYEIKFDDRAVI 320
Query: 219 DLCTEEDDSIPKQQFSFRHISEIESAEN--NSIVDVIGIVISVNPSVPILRKNGMETQRR 276
+ ++D SIP Q FS ++ + + E+ S+VDVIG V S + +L + E QR+
Sbjct: 321 -VEVDDDPSIPAQIFSPVKLATLTTDESLLGSVVDVIGFVTSFCATHSVLARE--EVQRK 377
Query: 277 ILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGK-SIGTIP 335
+ + D S +V +TLW + L++ V + P++++K+ +V++++GK S+ +
Sbjct: 378 EMTVVDDSSAAVTVTLW----EQHATALKDSV-LAERPLVAIKALRVSEYAGKVSLTSTS 432
Query: 336 STQLFINPD-FAEAHELREWFDSGGKNA 362
+ L ++P +A L W+++ G+ A
Sbjct: 433 RSVLLVDPHGLEDADRLEAWWEAEGEKA 460
>gi|302756891|ref|XP_002961869.1| hypothetical protein SELMODRAFT_77809 [Selaginella moellendorffii]
gi|300170528|gb|EFJ37129.1| hypothetical protein SELMODRAFT_77809 [Selaginella moellendorffii]
Length = 217
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 116/225 (51%), Gaps = 13/225 (5%)
Query: 304 LQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAA 363
+Q+ ++ G P++ VK GKV+D++GKS+ I + + I P+ +LREW
Sbjct: 1 IQKRIESGVQPIICVKGGKVSDYNGKSLLAIGVSTILIEPEMEAVADLREWMTLYYNITN 60
Query: 364 TVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLM 423
+ +S T+S+I + L E V A + +K+D F Y AC +
Sbjct: 61 FIHLSVSCTT---------TLSEISSMQLKVLESFPIYRVIATMKEMKTDEFYYNACINV 111
Query: 424 IGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILG 483
+ +QC +K TQ+ N W C CN E +++Y L+ I+D + W AFQE +EI+G
Sbjct: 112 VNAQQCGRKTTQTANGWFCSYCNIEFANMEFKYALKMCIKDSSSHVWAIAFQEVAQEIVG 171
Query: 484 CPAKELYMLKYELQDDVRFG-EIIRSRVFNQYLFRLKIKEELYGD 527
PAKEL ++YE + + IRS+++N F++ K E Y D
Sbjct: 172 MPAKELATMRYENYLALSLHIDGIRSKIYN---FKIWSKLEKYQD 213
>gi|222629943|gb|EEE62075.1| hypothetical protein OsJ_16859 [Oryza sativa Japonica Group]
Length = 207
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 79/105 (75%), Gaps = 3/105 (2%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
+ PIAAL+PY+ +W IKARVTAK L+ +N RG+ K F FDLLD GGE+ CF++
Sbjct: 84 LTPIAALSPYKCKWTIKARVTAKSGLQHLSNDRGEAKFFDFDLLDEQGGEMLAKCFSSAA 143
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVD 219
++FY +IEV +VYLIS+G +KPAQ+ FN +++E+ L+A+++V+
Sbjct: 144 EKFYGLIEVDKVYLISRGLVKPAQEPFN---SDYELALDASASVE 185
>gi|403222035|dbj|BAM40167.1| uncharacterized protein TOT_020000429 [Theileria orientalis strain
Shintoku]
Length = 463
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 111/475 (23%), Positives = 198/475 (41%), Gaps = 66/475 (13%)
Query: 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
A PI + Y W I +V K LR + +GD +F D++D +G IR +
Sbjct: 2 APYFPIKDITTYINNWTILGKVVDKSKLR---SIKGDNSLFHIDIVDKNGDTIRAKFWGV 58
Query: 173 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQ 232
+++ EI++ G VY SKG++ + K FN L +++EI S ++ E ++ ++
Sbjct: 59 AANKWNEILQKGSVYTFSKGTVNLSNKKFNTLPHKYEITFNTDSLIEPSDEVNEINVERN 118
Query: 233 FSFRHISEIESAENNS--IVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVEL 290
+ F + +I+S + +VD++ S+ P K ET+RR L + D + +E+
Sbjct: 119 YDFVSLRDIKSTSRDPPFVVDLLCFAKSLTPISVTNTKYNKETKRRSLFVVDDTSYELEV 178
Query: 291 TLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIG--------TIPSTQLFIN 342
T+WGD E ++D PV+ + + +++G IG + S N
Sbjct: 179 TVWGDMT--ESSIFDNILDK---PVI-ISQVTIKEWNGGRIGHTGYSSDIKLASANSVRN 232
Query: 343 PDFAEAHELREWFDSG-GKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLG------RS 395
D L W+ +N S+ + G + T+ + +G G +
Sbjct: 233 KD--RLATLESWYQQALQQNEGFKSMKAQGGLSGRETYEFSTIENVVTKGKGYFTFNCKL 290
Query: 396 EKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT--QSGNRWQCDRCNQEIDECD 453
K W S Y ACP C+KK Q N ++C C+ I + +
Sbjct: 291 RKLFWKNKDG------SARLWYKACP------NCHKKAINEQDSNVYRCISCDDSIVQPE 338
Query: 454 YRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYE----------LQDDVRFG 503
RY + D +G T + + G+++LG +EL + E L D++
Sbjct: 339 PRYSFSCVLIDFSGQIVTTVYGDMGKKLLGLSERELDGMDSEQLRNTLDFDVLHKDLKVS 398
Query: 504 EIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKSF 558
+SRV+N E R + ++VNY+ E+ LL+ + ++
Sbjct: 399 GFFKSRVYN--------------GESRTVFNITALEEVNYAKEAENLLEKMELTY 439
>gi|71030734|ref|XP_765009.1| replication factor A protein [Theileria parva strain Muguga]
gi|68351965|gb|EAN32726.1| replication factor A protein, putative [Theileria parva]
Length = 466
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 107/461 (23%), Positives = 206/461 (44%), Gaps = 45/461 (9%)
Query: 116 IPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVD 175
PI + Y W I ++ K L+ +GD D++D +G IR + +
Sbjct: 6 FPIKNITTYTSNWTILGKIVDKSPLKA---LKGDNSFLFVDIVDKNGDTIRAKFWGVAAN 62
Query: 176 RFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSF 235
++ +++E G VY SKG++ + K FN + +EI S +D E +D ++ + F
Sbjct: 63 KWNDLLEKGNVYTFSKGTVNLSNKKFNTTPHNYEITFTTDSKIDPSDELNDIKVERNYEF 122
Query: 236 RHISEIESAENNS--IVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLW 293
+ +I+S ++ +VD++ V S+ P K +T++R+L + D + +E+TLW
Sbjct: 123 VTLRDIKSTSRDTPFVVDILCFVKSLTPVSVTNTKFNRDTKKRLLYVVDDTSYELEVTLW 182
Query: 294 GDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELRE 353
G E ++++D PV+ + + +++G G T L + FA+ +R
Sbjct: 183 GQMT--ELPIFEDILDK---PVI-LSQVTIKEWNGGRFG---QTSLNTDIKFADFQSVRN 233
Query: 354 ---------WFDSG-GKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTV 403
W+ +N + ++ + + ++ T+ ++ L RS+
Sbjct: 234 KDRLSTLEAWYQKAMSENESFKTMKTQTMSSSRESYEFTTI----DDALTRSKGYFIFIC 289
Query: 404 RAFITFIKSDS----FCYTACPLMIGDRQCNKKVTQSG-NRWQCDRCNQEIDECDYRYLL 458
+ F K+ Y ACP C KKV + N W+C C+ I RY++
Sbjct: 290 KLRKLFWKNKDGEMRLWYHACP------TCLKKVVEEQENVWRCITCDDSIVTPVLRYIV 343
Query: 459 QAQIQDQTGLTWVTAFQESGEEILGCPAKEL-YMLKYELQDDVRFGEIIRSRVFNQYLFR 517
D +G + T + ESG+++LG +EL M K EL++ + F + + + +
Sbjct: 344 SCVFVDFSGQLFSTVYSESGKKLLGYSEQELDAMDKEELKNTLDFDVLHKDFKVSGFF-- 401
Query: 518 LKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKSF 558
K + Y E R V ++V+Y+ E+ LL+ + ++
Sbjct: 402 ---KNKTYNGESRNTFNVTNIEEVDYAKEAESLLERMHLTY 439
>gi|302824934|ref|XP_002994105.1| hypothetical protein SELMODRAFT_4757 [Selaginella moellendorffii]
gi|300138043|gb|EFJ04826.1| hypothetical protein SELMODRAFT_4757 [Selaginella moellendorffii]
Length = 232
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 122/239 (51%), Gaps = 8/239 (3%)
Query: 118 IAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRF 177
IA+L +W+ KARVT K LR++ R G VF+F + DS EIR+ +
Sbjct: 1 IASLTNRSYKWSFKARVTHKDTLRQFTTKR-TGWVFNFYVADSASSEIRIVSYGETARAL 59
Query: 178 YEIIEVGRVYLIS-KGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFR 236
E + G +Y+ S L+ A + + WEI + + + T +D+ IP+ +
Sbjct: 60 SEKVIQGAIYIFSGTCGLRSASELYTPFPATWEILADKKMEI-MPTADDECIPRIVLHRK 118
Query: 237 HISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDF 296
I+EI NS +D++G+VI V + R +RR++ + D S SV++ LWGD+
Sbjct: 119 CIAEILDITINSYIDLVGVVIWVGLTTVTPRGVESSNKRRMMTICDNSFHSVDVCLWGDY 178
Query: 297 CNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWF 355
++EG +L E + ++ +K G++ +F+ +S+ + L I+ D E+R W+
Sbjct: 179 ADEEGSQLLENI-----SIVCIKGGRICEFNERSVSVTNVSTLAIDADLDLVQEMRSWY 232
>gi|403331791|gb|EJY64864.1| hypothetical protein OXYTRI_14991 [Oxytricha trifallax]
Length = 593
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 130/502 (25%), Positives = 217/502 (43%), Gaps = 87/502 (17%)
Query: 116 IPIAALNPYQGR-WAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
IPI LN G W IK RVT KG Y G + +L+D +G +I T +
Sbjct: 108 IPIKDLNTASGEDWFIKGRVTKKGKKIVY----ATGFMLKIELIDKEGTQIEGTFYKDSC 163
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWE-IFLEATSTVDLCTEEDDSIPKQ-- 231
D+F + IE G++Y+I KG + A K F ++N++ IF E + + + +D+ KQ
Sbjct: 164 DKFIDKIEEGKIYVIGKGQIANANKKFTSIQNDYRIIFTEHSHVQEYVSMKDEVESKQSH 223
Query: 232 --------QFSFRHISEIESAENN-SIVDVIGIVISVNPSVPILRKNGMETQ-------- 274
+F+F IS++ S +N +DVIGI IS +P +++ +E +
Sbjct: 224 QSEHFQRFKFNFLKISDVLSCIHNLKQIDVIGINISKDP-----KRDDIEVKFDYGKNNV 278
Query: 275 --RRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIG 332
R IL + D S S+ +TLWG+ N E + ++ + G+++++ GKSI
Sbjct: 279 KGRLILEIVDNSNESINVTLWGELSNLEFNE---------GDIVIINGGRISNYGGKSIN 329
Query: 333 T-IPSTQLFINPDFAEAHELREWFDSGGKNAATV------SISREIAAGGAKN------- 378
++ INP +L + + N S + + A G
Sbjct: 330 CGSEHCKIIINPSREVVSDLENYINVDKINLVAKTKQQIQSQEQAVRAEGMSKLRDESQT 389
Query: 379 -------EIHKTVSQIKNEGLGRSEKPDWV-TVRAFIT-FIK-SDSFCYTACPLMIGDRQ 428
E++ + NEG P + ++ IT F++ SDS Y CP+
Sbjct: 390 FIVNLLEELNCSFEGTFNEGCETFLNPQGIFCLQGNITKFVQPSDSIAYLGCPI------ 443
Query: 429 CNKKVTQSGNR---WQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCP 485
C KKVT NR + C C + I E + Y + A QD TG + +E E+++
Sbjct: 444 CFKKVTD--NRLTGFYCTNCLKIIKE-KHHYFIHAIFQDFTGKVLIGFSREQAEQLMNNI 500
Query: 486 AKELYMLKYE--LQDDVRF-GEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQV- 541
YM K + + F G + + F + +K K E + R++ + D +
Sbjct: 501 DASTYMTKIRKTFRQECDFEGWLNENVYFKTFKILVKAKSEQFKGVNRLRFYALDIDYIS 560
Query: 542 ------NYSSESRYLLDLISKS 557
N+ E+R LL+ + +S
Sbjct: 561 KDSEKANFRDENRLLLNQLKQS 582
>gi|47227766|emb|CAG08929.1| unnamed protein product [Tetraodon nigroviridis]
Length = 193
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 98/176 (55%), Gaps = 7/176 (3%)
Query: 382 KTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRW 440
KT++ +K+E LG EK D+ T A I F++ ++ Y ACP + CNKKV Q +
Sbjct: 22 KTLADVKSEHLGHGEKADYYTCIATIVFLRKENCLYQACP----SQDCNKKVVDQQNGMF 77
Query: 441 QCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDV 500
+C++C++E YR +L A I D WVT FQES E ILG A L LK ++
Sbjct: 78 RCEKCDKEFPNFKYRLILSANIADYGDNQWVTCFQESAEAILGQNAAYLGQLKE--SNEA 135
Query: 501 RFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
F E+ + FN ++FR ++K E Y DE R+K TV+ V++ S+ L+ I K
Sbjct: 136 AFNEVFQQANFNSFIFRSRVKLETYNDESRIKATVMEVKPVDHKDYSKRLIMNIRK 191
>gi|401885438|gb|EJT49555.1| damaged DNA binding protein [Trichosporon asahii var. asahii CBS
2479]
Length = 182
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 95/173 (54%), Gaps = 6/173 (3%)
Query: 382 KTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQ 441
KT+ Q K+E LG ++K D+ +V A I +IK ++F Y ACP CNKK+ G W+
Sbjct: 11 KTIGQAKDEQLGMTDKTDYFSVCATILYIKQETFSYPACP----GEGCNKKLIDEGAEWR 66
Query: 442 CDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVR 501
C++CN+ +RY+LQ + D TG W+T F E GE+I+G A EL+ LK E D
Sbjct: 67 CEKCNRTYPGPVHRYILQMNVIDHTGSFWITGFNEVGEQIMGVSANELFKLKQE--SDPE 124
Query: 502 FGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLI 554
+ ++ F++ K++ + D RV+ +NY+ S+ L+D I
Sbjct: 125 AEKYFTRAAGREWDFKIMAKQDFFNDTARVRYQARSCAPINYAQSSQALVDKI 177
>gi|84995108|ref|XP_952276.1| replication factor A-related protein [Theileria annulata strain
Ankara]
gi|65302437|emb|CAI74544.1| replication factor A-related protein, putative [Theileria annulata]
Length = 466
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 102/451 (22%), Positives = 193/451 (42%), Gaps = 37/451 (8%)
Query: 116 IPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVD 175
PI + Y W I +V K L+ + +GD D++D +G IR + +
Sbjct: 6 FPIKNITTYTSNWTILGKVVEKSPLK---SLKGDNAFLFVDIVDKNGDTIRAKFWGLAAN 62
Query: 176 RFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSF 235
++ +++E G VY SKGS+ + K FN+ + +EI +D E DD ++ + F
Sbjct: 63 KWNDLLEKGNVYTFSKGSVNLSNKKFNNTPHNYEITFGTDGVIDPSDELDDINVERNYEF 122
Query: 236 RHISEIESAENNS--IVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLW 293
+ +I+S ++ +VD++ V S+ P K +T++R+L + D + +E+TLW
Sbjct: 123 VTLRDIKSTSRDTPFVVDILCFVKSLTPVSVTNTKFNRDTKKRLLYVVDDTSYELEVTLW 182
Query: 294 GDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHE--- 350
G + +L D+ PV+ + + +++G G T DF
Sbjct: 183 G-----QMTELPIFDDILDKPVI-LSQVTIKEWNGGRFGQTSLTTDIKLADFQSVRNKDR 236
Query: 351 ---LREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFI 407
L W+ T + +++ + + + + R++ +
Sbjct: 237 LSTLEAWYQKAMSENETFKTMKTQTMSSSRDSYEFSTIE---DAMTRAKGYFTFNCKLRK 293
Query: 408 TFIKSDS----FCYTACPLMIGDRQCNKKVTQSG-NRWQCDRCNQEIDECDYRYLLQAQI 462
F K+ Y +CP C KKV + N W+C C+ I RY++
Sbjct: 294 LFWKNKDGDMRLWYHSCP------NCYKKVVEEQENVWRCITCDDSIVTPVLRYIVTCVF 347
Query: 463 QDQTGLTWVTAFQESGEEILGCPAKEL-YMLKYELQDDVRFGEIIRSRVFNQYLFRLKIK 521
D +G T + ++G+++LG +EL M K +L++ + F + R + + K
Sbjct: 348 VDFSGQMVSTVYSDNGKKLLGYTEQELDAMDKEQLKNTLDFDVLHRDFKVSGFF-----K 402
Query: 522 EELYGDEQRVKITVIRADQVNYSSESRYLLD 552
+ Y E R V ++V+Y+ E+ LL+
Sbjct: 403 NKTYNGESRNIFNVTNVEEVDYAKETELLLE 433
>gi|402594450|gb|EJW88376.1| BRCA2 repeat family protein [Wuchereria bancrofti]
Length = 539
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 116/467 (24%), Positives = 194/467 (41%), Gaps = 78/467 (16%)
Query: 59 NSQNPGSFSTPNSGTFRAPNAGSIVRSFQPTVQPPYQPPPNFRNHGPILKNEAPA----R 114
NS N S NS + + S R + ++ P +N P L N+
Sbjct: 89 NSDNARCSSVENSDSLALTSLFSAARRNFKRISLTFKSPL-VKN--PRLDNDTVCGKVGS 145
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
+ PI L PY W + +V + ++R R +F+F +D G EIRV+ F +
Sbjct: 146 VTPIKLLTPYCKNWRLCIKVISVDEIRCIRGQR----IFAFQAVDDGGVEIRVSAFGDIA 201
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
R +I ++Y I+ S+K A K ++ +++ E+ L S V CT+ + ++
Sbjct: 202 HRTSTLICPEQMYYITHASVKMANKRYSRNQHDMEVVLRPDSEVTKCTDRPQILSPKKI- 260
Query: 235 FRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWG 294
++R + + D SG V + LWG
Sbjct: 261 --------------------------------------CKKREIQIVDDSGYYVTVNLWG 282
Query: 295 DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGK-SIGTIPSTQLFINPDFAEAHELRE 353
QK + + VL+VK V F G S+ ++ ST+L +P F EA LR
Sbjct: 283 -------QKAKVFPSEQYQHVLAVKGLLVRCFQGTLSLVSMASTKLLHDPHFPEADALRS 335
Query: 354 WFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSD 413
W+ A + ++++ NE H+ + Q+K G + + A I+ I +
Sbjct: 336 WYSKNKDKAFKSATVNQVSSF---NE-HRWIKQLKLSVDGH-----FFNLTAMISSIFIE 386
Query: 414 SFCYTACPLMIGDRQCNKK--VTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWV 471
+ Y C C KK V + G+ + C +C +E Y Y L ++ D TG V
Sbjct: 387 NAVYKGCL------TCKKKLLVEKDGDLYICSKCGI-CNEYKYYYTLHMELFDFTGTVHV 439
Query: 472 TAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRL 518
TAF + G++++G A E+ K+ D R+ +S +F Y+FRL
Sbjct: 440 TAFDDCGQKLIGEQADEV--AKFLRFDRDRYQSSFKSVLFKPYMFRL 484
>gi|395840382|ref|XP_003793039.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Otolemur garnettii]
Length = 475
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/160 (40%), Positives = 100/160 (62%), Gaps = 6/160 (3%)
Query: 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
A+++PIA+L PYQ +W I ARVT K +R ++N+RG+GK+FS +L+D GEIR T FN
Sbjct: 182 AKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSVELVD-QSGEIRATAFND 240
Query: 173 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEI-FLEATSTVDLCTEEDDSIPKQ 231
VD+F+ +IEV +VY +KG+LK A K F+ +KN++E+ F T DL + +
Sbjct: 241 QVDKFFPLIEVNKVYYFTKGTLKIANKQFSAVKNDYEMTFSNDTXXSDL---KSGGVGGS 297
Query: 232 QFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGM 271
+++ ++E++S EN D SV V + ++N M
Sbjct: 298 NTNWKTLNEVKS-ENLGQGDKADYFSSVATVVYLRKENSM 336
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 100/184 (54%), Gaps = 7/184 (3%)
Query: 375 GAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT 434
G N KT++++K+E LG+ +K D+ + A + +++ ++ Y A P + CNKKV
Sbjct: 295 GGSNTNWKTLNEVKSENLGQGDKADYFSSVATVVYLRKENSMYQAYP----TQDCNKKVI 350
Query: 435 -QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLK 493
Q ++C++C+ E YR +L I D WVT FQES E ILG Y+ +
Sbjct: 351 DQQNGLYRCEKCDSEFPNFKYRMILSVNIADFQDNQWVTCFQESAEAILG--QNTAYLGE 408
Query: 494 YELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDL 553
+ +++ F E+ ++ F + FR+++K E Y DE R+K TV+ V+Y R L+
Sbjct: 409 LKEKNEQAFEEVFQNANFRSFTFRIRVKLENYNDESRIKATVMDVKPVDYREYGRRLITN 468
Query: 554 ISKS 557
I ++
Sbjct: 469 IRRN 472
>gi|384494556|gb|EIE85047.1| hypothetical protein RO3G_09757 [Rhizopus delemar RA 99-880]
Length = 500
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/308 (26%), Positives = 135/308 (43%), Gaps = 31/308 (10%)
Query: 225 DDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTS 284
D +IP+ FSF I ++E E + V+ G + +R L + D +
Sbjct: 218 DSAIPQTNFSFVKIIDLEKTEKDETVEN--------------NLTGWQINKRSLLIIDDT 263
Query: 285 GRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPD 344
++LT+WG + E D P+++ K +VN+++G+S+ L NP
Sbjct: 264 EHPIQLTVWGS--------VAEEFDSNNTPIIACKGLRVNEYNGRSLSLPTFGTLTKNPS 315
Query: 345 FAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVR 404
EAH L +WF +N + IS + G N + Q+ N L S D+ R
Sbjct: 316 IPEAHHLYQWFSFKKQNIQQL-ISLKSLKGEKDNIPWINLVQLYNGHLNTSYTLDYFMFR 374
Query: 405 AFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQD 464
I++IK D+ Y CP C KK+ Q + W+C++C + + ++RY+L A I D
Sbjct: 375 GTISYIKHDTIAYPGCP------TCAKKLQQKESSWECEQCKKILSVPNWRYVLFAGISD 428
Query: 465 QTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEEL 524
+G + T F I+G A EL LK + F + +F Y F+ + K
Sbjct: 429 FSGQAFFTIFDNVAVHIIGMTAAEL--LKIADRSMEIFQKEFTKALFKTYNFKARAKAVQ 486
Query: 525 YGDEQRVK 532
Y +K
Sbjct: 487 YNVSWLIK 494
>gi|340378814|ref|XP_003387922.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like,
partial [Amphimedon queenslandica]
Length = 240
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 75/105 (71%), Gaps = 2/105 (1%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
++PI ALNPYQ +W IKARVT+K LR YNN+RG+G++ + + +D GEIR T FN
Sbjct: 137 VVPITALNPYQNKWTIKARVTSKPPLRHYNNSRGEGRILTLEFVDHS-GEIRATAFNEDA 195
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVD 219
DRF+ +EV +VY +S+G +KPA K + + N++E+ L A +T++
Sbjct: 196 DRFFPNVEVNKVYYVSRGRIKPANKIY-YANNDYELTLGAETTIE 239
>gi|340378810|ref|XP_003387920.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Amphimedon queenslandica]
Length = 251
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 75/105 (71%), Gaps = 2/105 (1%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
++PI ALNPYQ +W IKARVT+K LR YNN+RG+G++ + + +D GEIR T FN
Sbjct: 137 VVPITALNPYQNKWTIKARVTSKPPLRHYNNSRGEGRILTLEFVDHS-GEIRATAFNEDA 195
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVD 219
DRF+ +EV +VY +S+G +KPA K + + N++E+ L A +T++
Sbjct: 196 DRFFPNVEVNKVYYVSRGRIKPANKIY-YANNDYELTLGAETTIE 239
>gi|66804925|ref|XP_636195.1| hypothetical protein DDB_G0289513 [Dictyostelium discoideum AX4]
gi|60464550|gb|EAL62688.1| hypothetical protein DDB_G0289513 [Dictyostelium discoideum AX4]
Length = 679
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 104/442 (23%), Positives = 190/442 (42%), Gaps = 95/442 (21%)
Query: 127 RWAIKARVTAKGDLRRYNN-ARGDGKVFSFDLLDSDGGEIRVTCF------NAVVDRFYE 179
++ I+A V K L+ +N A G+GK+FS +L+DS G EI+ CF N ++ Y+
Sbjct: 224 QFTIRAMVRNKQPLKSWNKGANGEGKLFSMELVDSTG-EIKCACFSDSSNPNNFINALYD 282
Query: 180 IIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHIS 239
E G+VY I + +K A K +N L ++ E+ + + S V + ++ P ++F+ I+
Sbjct: 283 CFENGKVYFIQRFFVKSANKLYNTLSHQSELSINSESRVMISPDQTQFTP--HYNFKKIA 340
Query: 240 EIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNK 299
+IE+ E N VDVIG + +++P + K G E + + + D + S+ + W N+
Sbjct: 341 DIENLEKNDTVDVIGAITNIDPIANLTSKQGKEFTKFGITIADDTNASINVVFW----NE 396
Query: 300 EGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPD-FAEAHELR---EWF 355
+ ++ V VG ++++K KV+DFSG+++ + +N + E LR + F
Sbjct: 397 KATEVAPQVKVG--DIIAMKGVKVSDFSGRTLSYSFGSSFGLNDEQLQETSNLRAHLQNF 454
Query: 356 DSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSF 415
D + T++ S + + V I I++ S
Sbjct: 455 DVNSLQSLTIASSY--------------------------TQSSYEQVNLPIFLIRTIS- 487
Query: 416 CYTACPLMIGDRQCNKKVTQSGNRWQ---------------------------------- 441
PL I D + NKK+ ++ ++Q
Sbjct: 488 --EGSPLFISDPKTNKKLYRTIGQFQRVVPLSQAGEMDKGDEISSKMEWKYKACKKCKKS 545
Query: 442 -----CDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYEL 496
C +C D+ +Y Y + ++ D V ++G+ + G A ELY + E
Sbjct: 546 CPEGSCPQCGS--DDWEYAYRMSLKLSDGDDAISVEVMGKTGDRLFGKSAAELYQMNQE- 602
Query: 497 QDDVRFGEIIRSRVFNQYLFRL 518
+ EI + + N Y+ L
Sbjct: 603 ----QINEIFNTVLSNNYVVSL 620
>gi|403336688|gb|EJY67538.1| Subunit of heterotrimeric Replication Protein A (RPA) [Oxytricha
trifallax]
Length = 664
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 112/503 (22%), Positives = 210/503 (41%), Gaps = 70/503 (13%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
+P LN W IKA++ K + + +NN RG G + + DL+D G I+ T F V
Sbjct: 97 FVPFKQLNLQSQDWTIKAKILKKHEKKCWNNERGQGLLMNIDLIDQWGSTIQATFFKDGV 156
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQF- 233
++F +++ G VY+ + G++K + + ++ +++ + + + V C ++ IP
Sbjct: 157 EKFENLLQEGNVYIFTCGNVKTSNSKYTNMSSKYSLAFDKQALVKECETKEKFIPMGNLE 216
Query: 234 SFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLW 293
+ + + EI E DVI ++ + + I KNG QR L + D +G V L +W
Sbjct: 217 NIKSLPEIYKLERGQKCDVIVVIEQIGHTNFIPLKNGGLKQRSNLIVADDTGSCVLLCIW 276
Query: 294 GDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINP---------- 343
G +E Q+ +D VL V++ K++DF S+ + + + +NP
Sbjct: 277 G----REDIHFQD-IDPRNPSVLYVRNAKISDFGRFSLNSNDESIIEVNPPNLQQKVREL 331
Query: 344 -------------------------DFAEAHELREWFDSGGKNAATVSISRE-------- 370
+F +LR F + T+ S +
Sbjct: 332 QNWYRQIGFKQKLKNLTEMNEYVQNNFGFTRDLRLPFSTPNSVGGTLEYSSQQEVEQKII 391
Query: 371 IAAGGAKNEIHKTVSQIKN-------EGLGRSEKPDWVTVRAFI----TFIK-SDSFCYT 418
I K E K +S++ + + + D + FI + IK +D Y
Sbjct: 392 ICKARLKPEKFKLLSELIHYLNYQIPQAEYNKQSLDQCKYKYFILGYLSKIKINDQPYYK 451
Query: 419 ACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESG 478
ACP+ +C KK+ + +C C + D Y A I D T V ++ G
Sbjct: 452 ACPV----EKCRKKMQITAKGLECRGCLKYYDTFVPAYSFSATISDHTDSIEVQFYRCHG 507
Query: 479 EEILGCPAKELYMLK----YELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKIT 534
E +LGC A++ LK Y + + I R++ + +++ E ++
Sbjct: 508 EALLGCSAQKFVELKENSYYGDDNSLELQNIYNRRLYQNFTMEIQVLYTQPNQENKLSFN 567
Query: 535 VIRA-DQVNYSSESRYLLDLISK 556
+R + +SS+++Y+L+ + +
Sbjct: 568 CMRLFGEETWSSQNKYILNQLKQ 590
>gi|21465964|pdb|1L1O|C Chain C, Structure Of The Human Replication Protein A (Rpa)
Trimerization Core
gi|21465967|pdb|1L1O|F Chain F, Structure Of The Human Replication Protein A (Rpa)
Trimerization Core
Length = 181
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 102/184 (55%), Gaps = 7/184 (3%)
Query: 375 GAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT 434
G N KT+ ++K+E LG+ +KPD+ + A + +++ ++ Y ACP + CNKKV
Sbjct: 1 GGSNTNWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPT----QDCNKKVI 56
Query: 435 -QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLK 493
Q ++C++C+ E YR +L I D WVT FQES E ILG A L LK
Sbjct: 57 DQQNGLYRCEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELK 116
Query: 494 YELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDL 553
+++ F E+ ++ F ++FR+++K E Y DE R+K TV+ V+Y R L+
Sbjct: 117 --DKNEQAFEEVFQNANFRSFIFRVRVKVETYNDESRIKATVMDVKPVDYREYGRRLVMS 174
Query: 554 ISKS 557
I +S
Sbjct: 175 IRRS 178
>gi|321470011|gb|EFX80989.1| hypothetical protein DAPPUDRAFT_318086 [Daphnia pulex]
Length = 394
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 109/377 (28%), Positives = 162/377 (42%), Gaps = 60/377 (15%)
Query: 117 PIAALNPYQG---RWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAV 173
PI+ L+ + W IK RVT K NN D K F +L+D GEI F
Sbjct: 27 PISGLHYLKTDHQNWLIKVRVTKKTGKILVNNGISDVKYFKMNLIDLWKGEIEAMAFGDE 86
Query: 174 VDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQF 233
DRF+EI EV C ++DDSIP +F
Sbjct: 87 CDRFFEIFEVE------------------------------------CLDDDDSIPNAEF 110
Query: 234 SFRHISEIESAENNSIVDVIGIVISVNP-SVPILRKNGMETQRRILNL-KDTSGRSVELT 291
F I I + + S VDVI V S+ + + +R LNL D SG S+ LT
Sbjct: 111 YFVPIKTISTMKPGSFVDVIADASFVGKVSMGLSQSTQRHYTKRKLNLIDDVSGDSIVLT 170
Query: 292 LWGDFCNKEGQKLQEMVDVGFFPVL--SVKSGKVNDFSGK-SIGTIPSTQLFINPDFAEA 348
+W D N Q D VL +V+ ++ ++ GK +GT+ +T L IN E
Sbjct: 171 VWNDLVNDLNQH-----DYFGDSVLRIAVRGAQIVEYKGKLELGTVSTTILKINE---EL 222
Query: 349 HELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFIT 408
++ +F+ G+ + I + A + T +IK+ L +P+ +VRA I+
Sbjct: 223 KDIPGFFNIIGRRSQIAPIFEKSYESYAICKDITTFQEIKD--LKTPYRPERYSVRAMIS 280
Query: 409 FIKSDSFCYTACPLMIGDRQCNKKVTQS--GNRWQCDRCNQEIDECDYRYLLQAQIQDQT 466
I +S Y C C KKV + N + C +C+ E E + +L+ Q+ D +
Sbjct: 281 IIIKNSPFYEGCYF----EGCRKKVNFNLLTNNYYCSKCDAENPEFRWCLILKFQLNDIS 336
Query: 467 GLTWVTAFQESGEEILG 483
G VT FQE E+++G
Sbjct: 337 GSQRVTCFQEGFEDLVG 353
>gi|302825524|ref|XP_002994373.1| hypothetical protein SELMODRAFT_4831 [Selaginella moellendorffii]
gi|300137728|gb|EFJ04565.1| hypothetical protein SELMODRAFT_4831 [Selaginella moellendorffii]
Length = 224
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 118/227 (51%), Gaps = 5/227 (2%)
Query: 116 IPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVD 175
+PI +N + RW+++ARVT KG L + G V S D+ D++ EIR+ F
Sbjct: 1 MPIKDINDHCYRWSLRARVTHKGKLVFFETGTA-GCVMSVDVADAESSEIRIVGFGENAK 59
Query: 176 RFYEIIEVGRVYLISKGS-LKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDD-SIPKQQF 233
R IE G VY+ S S ++ ++ + K+ WEI +A+ T+++ EDD IP
Sbjct: 60 RLSSEIEQGSVYIFSGNSGVQRSKPAYTPYKSNWEI--KASKTMEIKRVEDDLRIPNVFL 117
Query: 234 SFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLW 293
+ + + VDVIG V+ + + + +G +RR+L L D S S+++ LW
Sbjct: 118 KRTSVLDASKLSQETFVDVIGGVMWIGQTNISPKDSGAFMRRRMLCLSDESSHSIDMCLW 177
Query: 294 GDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLF 340
EG ++++ + G P++ VK G+++D++GKSI + L
Sbjct: 178 DSKAEDEGSEIEDKLGRGERPIVCVKGGRISDYNGKSISVTGGSTLL 224
>gi|294876282|ref|XP_002767631.1| replication protein A large subunit, putative [Perkinsus marinus
ATCC 50983]
gi|239869313|gb|EER00349.1| replication protein A large subunit, putative [Perkinsus marinus
ATCC 50983]
Length = 286
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/292 (28%), Positives = 148/292 (50%), Gaps = 31/292 (10%)
Query: 186 VYLISKGSLKPAQKNFNHLKNEWEI-FLEATSTVDLCTEEDDSIPKQQFSFRHISEIESA 244
VY SKG++K A K ++ + +EI F E + V++ + +D I K ++SF + E++S
Sbjct: 1 VYTFSKGNVKVANKRYSSCNHNYEIVFEEDSQIVEVQDDVEDHIDKIKYSFCPVRELKSK 60
Query: 245 ENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKL 304
S VD++ ++ P+ + KNG E RR L + D SG V++T W D N + +
Sbjct: 61 SVPSTVDLLVVIKDHRPAGTVNSKNGAELFRRNLTVCDESGCCVDVTFWNDLVNVVDESV 120
Query: 305 QEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAAT 364
+ PV+++K V D+ G+S T+ STQ+ +NPD EA +L+ W+ + G + A
Sbjct: 121 LQTQ-----PVVAMKGVSVRDYGGRSCSTLNSTQIEVNPDIPEAKQLKIWWANTGCSMAF 175
Query: 365 VSISRE---IAAGGAKNEIHK--TVSQIKNE-------GLGRSEKPDWVTVRAFITFIKS 412
++S++ + G + + K T++++KN+ GL S + + F+T
Sbjct: 176 TNLSQQGTSVPGSGGQAMVTKEMTIAEMKNDVKNMDLGGLMHSY--EIIGRLQFVTTRGR 233
Query: 413 DS----FCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQA 460
D Y AC CN+K+ + + + C CN+++ + R L A
Sbjct: 234 DGNDIPIFYMAC------ESCNRKMAEGSDGF-CQACNRQVRTRNLRPCLSA 278
>gi|297736060|emb|CBI24098.3| unnamed protein product [Vitis vinifera]
Length = 181
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 100/170 (58%), Gaps = 9/170 (5%)
Query: 389 NEGLGRSEKPDWVTVRAFITFIKSD-SFCYTACPLMIGDRQCNKKVTQS-GNRWQCDRCN 446
N LG +KP + ++RA+I+FIK D + Y AC + CNKKVT + G+ + C+ C
Sbjct: 14 NPSLGE-DKPSFFSIRAYISFIKPDQTMWYRAC------KTCNKKVTDAIGSEYWCEGCQ 66
Query: 447 QEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEII 506
+ DEC RY++ ++ D +G W++ F + E I GC A EL LK + ++ F + +
Sbjct: 67 KNDDECSLRYIMVVKVSDASGEAWLSLFNDQAERIFGCSADELDKLKSQEGEENLFQQKL 126
Query: 507 RSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
+ ++ LFR+ + + Y +E+R +IT V++++ESR LL+ ISK
Sbjct: 127 KEAIWVPQLFRISVAQHEYMNEKRQRITARAVVPVDFAAESRLLLEEISK 176
>gi|297743679|emb|CBI36562.3| unnamed protein product [Vitis vinifera]
Length = 181
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 100/170 (58%), Gaps = 9/170 (5%)
Query: 389 NEGLGRSEKPDWVTVRAFITFIKSD-SFCYTACPLMIGDRQCNKKVTQS-GNRWQCDRCN 446
N LG +KP + ++RA+I+FIK D + Y AC + CNKKVT + G+ + C+ C
Sbjct: 14 NPSLGE-DKPSFFSIRAYISFIKPDQTMWYRAC------KTCNKKVTDAIGSGYWCEGCQ 66
Query: 447 QEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEII 506
+ DEC RY++ ++ D +G W++ F + E I GC A EL LK + ++ F + +
Sbjct: 67 KNDDECSLRYIMVVKVSDASGEAWLSLFNDQAERIFGCSADELDKLKSQEGEENLFQQKL 126
Query: 507 RSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
+ ++ LFR+ + + Y +E+R +IT V++++ESR LL+ ISK
Sbjct: 127 KEAIWVPQLFRISVAQHEYMNEKRQRITARAVVPVDFAAESRLLLEEISK 176
>gi|300120592|emb|CBK20146.2| unnamed protein product [Blastocystis hominis]
Length = 362
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 51/96 (53%), Positives = 66/96 (68%), Gaps = 1/96 (1%)
Query: 116 IPIAALNPY-QGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
IPI+A++PY W I+ RVT K +R +NNARG+GK+FS DLLD D GEIRVT F +V
Sbjct: 230 IPISAIHPYLTNGWFIRCRVTNKSSIRTFNNARGEGKLFSVDLLDKDSGEIRVTFFTEMV 289
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEI 210
D FY +EVG+VY + A+K FN L NE+E+
Sbjct: 290 DTFYNYLEVGKVYDFCNFKIGFARKQFNTLNNEYEL 325
>gi|302825877|ref|XP_002994510.1| hypothetical protein SELMODRAFT_432429 [Selaginella moellendorffii]
gi|300137509|gb|EFJ04425.1| hypothetical protein SELMODRAFT_432429 [Selaginella moellendorffii]
Length = 373
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 111/221 (50%), Gaps = 20/221 (9%)
Query: 318 VKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREW----FDSGGKNAATVSISREIAA 373
+K G+++D++GKSI + L ++P+ + L EW +D+ T S S+ +
Sbjct: 153 MKGGRISDYNGKSISVTGGSTLLVDPELEDVSWLHEWMVASYDTTNFVHVTNSSSKAVIY 212
Query: 374 GGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKV 433
G KTVS++ + L SE V + I++ F Y AC ++ RQC+KKV
Sbjct: 213 GT------KTVSEMLSINLKVSEFSAIFRVIVSVKEIQTGDFYYPACMKVVNGRQCSKKV 266
Query: 434 TQ-SGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYML 492
TQ S + WQC+ C+ + + +Y L I D TG W AF ++ EI+G PA +L
Sbjct: 267 TQVSESMWQCNSCDSDSGDIQLKYALHLCILDSTGHIWAVAFDDAANEIVGMPACKL--- 323
Query: 493 KYELQDD--VRFGEI---IRSRVFNQYLFRLKIKEELYGDE 528
LQDD F I IRS+++N L R K E G +
Sbjct: 324 -AALQDDDYTSFSAIMDSIRSKMYNLKLNRKKTDLEECGQQ 363
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 60/112 (53%), Gaps = 4/112 (3%)
Query: 116 IPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVD 175
+PI +N + RW+++ARVT KG L + G V S D+ D++ +I + F
Sbjct: 32 MPIKDINDHCYRWSLRARVTHKGKLVFFETGTV-GCVMSVDVADAESSKICIVGFGENAK 90
Query: 176 RFYEIIEVGRVYLISKGS-LKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDD 226
R IE G VY+ S S ++ ++ + K+ WEI +A+ T+++ EDD
Sbjct: 91 RLSSEIEQGSVYIFSGYSGVQHSKPAYTPYKSNWEI--KASKTMEIKRVEDD 140
>gi|399217121|emb|CCF73808.1| unnamed protein product [Babesia microti strain RI]
Length = 455
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 124/471 (26%), Positives = 208/471 (44%), Gaps = 73/471 (15%)
Query: 118 IAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRF 177
I + Y W I ARV K L N + + K+F D++D G IR + D+
Sbjct: 7 IRDITTYTTNWIIIARVVEKSPL---NTLKNNNKLFYIDIVDKLGDTIRAKFWGNAADKH 63
Query: 178 YEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSI--PKQQFSF 235
+ ++E+G+VY S+G + + + FN N +E+ EA S + EDD + K++F+F
Sbjct: 64 FPLLELGKVYSFSQGRVSVSNRKFNTNPNMYELTFEANSPISPI--EDDGLINTKRRFNF 121
Query: 236 RHISEIE--SAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLW 293
I +I+ S E + D++ IV +V + K+G ETQ+R + + D S +E++ W
Sbjct: 122 ISIRDIKNTSKELPFVCDILCIVNTVAQPQILNMKSGDETQKRSIFVVDDSNYQMEVSFW 181
Query: 294 GDFCNKEGQKLQEMVD-VGFFPVLS---------VKSGKVNDFSGKSIGTIPSTQLFINP 343
D N L D +G VLS V+SG +SG SI N
Sbjct: 182 SDKAN-----LDIFNDCIGKSVVLSQIKIKDWQNVRSGY--SWSGSSITYACDE----NV 230
Query: 344 DFAEAHELREWFDSG-GKNAATVSIS------------REIAAGGAKNEIHKTVSQIKNE 390
D ++ H L +W+ KN +S+ +++++ NE+ + E
Sbjct: 231 DKSQLHSLEKWYHEAISKNHDFISMKSNGQSHVYSIERKDLSSISMNNEVGGSY-----E 285
Query: 391 GLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEI 449
+ ++ W IT I Y +C +C KKV N ++ C C+ I
Sbjct: 286 FVAHLKRIYWKNRDGEITLI------YPSC------NKCKKKVHMDENEKFVCPSCDS-I 332
Query: 450 DECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSR 509
E ++RY A D +G + F + G+ ++ A +L L ++ + +
Sbjct: 333 VEPEFRYRFTAIFADYSGHLPIHFF-DIGQSLINVQADKLKSLDHD-----SLKQFLDHD 386
Query: 510 VFNQYLFRLKIKEELYGDEQRVKITVIRADQ---VNYSSESRYLLDLISKS 557
+ Q LFR+ + ++ VK TV RA + VNY E Y+ D++ KS
Sbjct: 387 ILYQ-LFRVSVYAKVSTFNGEVK-TVYRATKVEPVNYEEEIAYMTDVLKKS 435
>gi|449282115|gb|EMC89022.1| Replication protein A 70 kDa DNA-binding subunit [Columba livia]
Length = 196
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 97/160 (60%), Gaps = 3/160 (1%)
Query: 125 QGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVG 184
+ +WAI A VT KG + ++N+RG+GK+FS +L++ + EIR T F+ D+F+ + E+
Sbjct: 27 KSKWAICACVTQKGQICTWSNSRGEGKLFSKELVN-ESSEIRATAFSDHADKFFPLTELD 85
Query: 185 RVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESA 244
+VY SKG+LK A K + +KN++E + ++V C + +P QF F IS+ E+
Sbjct: 86 KVYYFSKGTLKSANKQYTAVKNDYETTFTSETSVVPCNDA-QHLPSVQFDFVSISDFENT 144
Query: 245 ENNSIVDVIGIVISVNPSVPILRK-NGMETQRRILNLKDT 283
+SIV+V G+ S + I+ K N + +R ++L D+
Sbjct: 145 PEDSIVNVSGVCKSYEDVIKIIMKVNNRDVSKRNVHLMDS 184
>gi|170591825|ref|XP_001900670.1| BRCA2 repeat family protein [Brugia malayi]
gi|158591822|gb|EDP30425.1| BRCA2 repeat family protein [Brugia malayi]
Length = 387
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 102/357 (28%), Positives = 161/357 (45%), Gaps = 49/357 (13%)
Query: 186 VYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSI-PKQQFSFRHI------ 238
+Y I+ S+K A K ++ +++ E+ L S V CT+ + PK F F I
Sbjct: 1 MYYITHASVKMANKRYSRNQHDMEVVLRPDSEVTKCTDRPQILSPKVNFEFVRIHNLQSF 60
Query: 239 --SEIES------------AENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTS 284
+EIES NN DV+G VI + + K G + Q+R + + D S
Sbjct: 61 IDTEIESFGACEGFLMNKERLNNITEDVLGTVIHIGEMKQLKSKTGEDLQKREIQIVDDS 120
Query: 285 GRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGK-SIGTIPSTQLFINP 343
G V + LW GQK + + VL+VK V F G S+ ++ ST+L +P
Sbjct: 121 GYYVTVNLW-------GQKAKIFPSEQYQHVLAVKGLLVRCFQGTISLVSMTSTKLLHDP 173
Query: 344 DFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTV 403
F EA L+ W+ S K+ A S S + + H+ + Q+K G + +
Sbjct: 174 HFPEADALQFWY-SKNKDKAFKSASVNQVSSFKE---HRWIKQLKFSVDGH-----FFNL 224
Query: 404 RAFITFIKSDSFCYTACPLMIGDRQCNKK--VTQSGNRWQCDRCNQEIDECDYRYLLQAQ 461
A I+ I ++ Y C C KK V + G+ + C +C +E Y Y L +
Sbjct: 225 TAMISSIFIENAVYKGCL------TCKKKLLVEKDGDLYICSKCGI-CNEYKYYYTLHME 277
Query: 462 IQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRL 518
+ D TG VTAF + ++++G A E+ K + D R+ +S +F Y+FRL
Sbjct: 278 LFDFTGTVHVTAFDDCAQKLIGEQADEV--AKLLIFDRDRYQSSFKSVLFKPYMFRL 332
>gi|88191850|pdb|1YNX|A Chain A, Solution Structure Of Dna Binding Domain A (Dbd-A) Of
S.Cerevisiae Replication Protein A (Rpa)
Length = 114
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 75/112 (66%), Gaps = 1/112 (0%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
I I L+PYQ W IKARV+ KG+++ ++N RGDGK+F+ + LD+ GEIR T FN
Sbjct: 4 IFAIEQLSPYQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDT-SGEIRATAFNDFA 62
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDD 226
+F EI++ G+VY +SK L+PA+ F +L + +E+ L+ + ++ C +E +
Sbjct: 63 TKFNEILQEGKVYYVSKAKLQPAKPQFTNLTHPYELNLDRDTVIEECFDESN 114
>gi|300120593|emb|CBK20147.2| unnamed protein product [Blastocystis hominis]
Length = 182
Score = 102 bits (254), Expect = 6e-19, Method: Composition-based stats.
Identities = 58/175 (33%), Positives = 96/175 (54%), Gaps = 5/175 (2%)
Query: 382 KTVSQIKNEGLGRSEKPDWVTVRAFITFIKSD-SFCYTACPLMIGD-RQCNKKVTQSGNR 439
KT+S I++E LG EKPD++TV+ + I D S Y ACP + D R+C KK+ Q +
Sbjct: 5 KTLSAIQDEQLGFKEKPDYLTVKVMVRSIPHDRSVVYPACPNVKEDGRKCQKKLIQGVDG 64
Query: 440 WQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDD 499
W C+ CN+ ++ +YRY+ ++ D +G +V F + GE PA + L E +
Sbjct: 65 WSCESCNRVVEAPEYRYIFNMEVMDYSGSQYVQLFNDEGERFFEIPAGRMNEL--EKSNS 122
Query: 500 VRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLI 554
+ ++ ++R+F +Y+ L++K + RV+ TV R D V+ E L L+
Sbjct: 123 EEYEKVFKNRLFKEYIMTLRVKVD-QSMTSRVRCTVYRFDPVDVDKEVDDLASLL 176
>gi|328909495|gb|AEB61415.1| replication protein a 70 kda DNA-binding subunit-like protein,
partial [Equus caballus]
Length = 187
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 98/177 (55%), Gaps = 7/177 (3%)
Query: 382 KTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRW 440
KT+ ++K+E LG+ +K D+ + A + +++ ++ Y ACP + CNKKV Q +
Sbjct: 14 KTLYEVKSENLGQGDKADYFSSVATVVYLRKENCMYQACP----SQDCNKKVIDQQNGLY 69
Query: 441 QCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDV 500
+C++C+ E YR +L I D WVT FQES E ILG Y+ + + +++
Sbjct: 70 RCEKCDSEFPSFKYRMILSVNIADFQENQWVTCFQESAEAILG--QNTAYLGELKEKNEQ 127
Query: 501 RFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKS 557
F E+ ++ F + FR+++K E + DE R+K TV+ V+Y R L+ I K+
Sbjct: 128 AFEEVFQNANFRSFTFRIRVKLETFNDESRIKATVMDVKPVDYREYGRRLIMNIRKN 184
>gi|70952412|ref|XP_745376.1| replication factor A-related protein [Plasmodium chabaudi chabaudi]
gi|56525679|emb|CAH78783.1| replication factor A-related protein, putative [Plasmodium chabaudi
chabaudi]
Length = 482
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 105/469 (22%), Positives = 205/469 (43%), Gaps = 47/469 (10%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
+ I+ + Y +W IKA+V K L + N + FS D+ D G I + +
Sbjct: 2 LFRISQITTYVSKWIIKAKVVNKSKLSTFKN---NNSFFSIDITDVHGDSISCKFWGSSA 58
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
D+++ IE+ +VY+ SKG + A +N++K+++E+ S + ++ + ++ S
Sbjct: 59 DKWFNNIELKKVYIFSKGRVSIANPKYNNVKHKYELTFNEDSEIHEVKDDGEIKIQKNIS 118
Query: 235 FRHISEIESAENNS--IVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTL 292
++ +I+ A + D+IGIV + P + K G + ++ + + D + S E++
Sbjct: 119 LVNLRDIKIATKETPFTADLIGIVKHICPPNNLKTKQGNDIVKQNIIIVDDTKHSFEISF 178
Query: 293 WGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHE-- 350
W N + L+E ++ F +S+++ ND + G S + N + ++
Sbjct: 179 WDSNVNLIEKDLKEN-EIYIFTNISIRNW--NDMKNGTFGVTSSIEKVENLNDELKNKCL 235
Query: 351 -LREWFDSGGKNAATVSISREIAAGGAKN-EIHKTVSQIKNEGLGRSEKPDWVTVRAFIT 408
+ EW+++ GK ++ ++ + + H VS + N+ LG+ + R
Sbjct: 236 GISEWYNNNGKYEQFTNMKNILSNDVIQTPDKHYAVSDV-NDVLGKISGTYTLVGRIKRI 294
Query: 409 FIKSDS----FCYTACPLMIGDRQCNKKVTQSGNR-------------------WQCDRC 445
+ KS F Y AC +C KK+ SG + C C
Sbjct: 295 YWKSKENEHRFYYPACT------KCKKKLLSSGQDNTQGMDYDNSNFNNDESCVYSCMNC 348
Query: 446 NQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEI 505
++ + Y Y D +G + AF + G +LG A+EL L + D + +
Sbjct: 349 DENDVKPFYNYTFNFLFMDFSGSITLRAFSDEGFNLLGKKAEELKGLDEDTLDYLFNYDF 408
Query: 506 IRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLI 554
+ + +Y +++ +++Y +RV T +R YS S YLL+ I
Sbjct: 409 L----YKEYKVVVRVSQKIYNGIERVNFTAMRIFPQKYSDIS-YLLNEI 452
>gi|194904084|ref|XP_001980998.1| GG17468 [Drosophila erecta]
gi|190652701|gb|EDV49956.1| GG17468 [Drosophila erecta]
Length = 228
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 119/241 (49%), Gaps = 18/241 (7%)
Query: 117 PIAALNPYQGRW-AIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVD 175
PI +L P +IKARVT K ++ ++NNA DG +F +LLD + GEI FN +++
Sbjct: 1 PICSLLPTLCNMTSIKARVTWKSEITQWNNAGKDGIIFIMNLLD-ESGEITGVVFNNLIN 59
Query: 176 RFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSF 235
FY I+ G VY+ S+ ++ A+ F KN + +FL + V+L E IP++ ++F
Sbjct: 60 AFYGQIQTGLVYIFSRFQVQQAENCFKVSKNPFAVFLLWNTVVELSASE--RIPRETYNF 117
Query: 236 RHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGD 295
+SE+ + + VD IGI V L G + R IL L D + V L LW
Sbjct: 118 LPLSEVSTKPDKEPVDAIGICTEVRD----LDHRGGHSIREIL-LVDPDYQPVMLNLW-- 170
Query: 296 FCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGK-SIGTIPSTQLFINPDFAEAHELREW 354
KE + + D V+ VK + + + T + INPD +A + EW
Sbjct: 171 --EKEAENFEGRPD----DVIVVKGARAQPHNNAIKLNASWYTNVQINPDIPDATSMLEW 224
Query: 355 F 355
+
Sbjct: 225 Y 225
>gi|429327570|gb|AFZ79330.1| hypothetical protein BEWA_021780 [Babesia equi]
Length = 467
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 105/455 (23%), Positives = 191/455 (41%), Gaps = 44/455 (9%)
Query: 116 IPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVD 175
IPI + Y W I AR+ K L+ + + D S D+ D +G IR +
Sbjct: 6 IPIKNITTYTSNWTILARIIDKSPLK---SIKSDNSFMSIDIKDKNGDTIRGKFWGVAAT 62
Query: 176 RFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSF 235
++ +I++ G VY SKGS+ A K FN+ + +E+ S ++ + D ++ ++F
Sbjct: 63 KWDDILQKGNVYTFSKGSVNLANKKFNNTPHNYELTFNIDSQIEQADDIGDIDNERNYNF 122
Query: 236 RHISEIESAENNS--IVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLW 293
+ EI+S S +VD++ S++P K E +RR L++ D SG +E+TLW
Sbjct: 123 VTLREIKSTARESPFMVDILCFAKSISPISMTSTKFSKEMKRRTLHIVDDSGYELEITLW 182
Query: 294 GDFCNKEGQKLQEMVD----VGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAH 349
G E + L +++D V + G+ S S I + Q + D +
Sbjct: 183 GQMA--ELELLDDILDKPLIVSQITIKEWNGGRYGQSSLASDIKIANQQNVRDKD--KLS 238
Query: 350 ELREWFDSG-GKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLG------RSEKPDWVT 402
L W+ +N S+ + + + + +I ++ G + + W
Sbjct: 239 NLETWYHQALSQNEIFKSLKSQSSISNKETYEFSNIEKINSKTKGGYTFNCKLRRIFWKN 298
Query: 403 VRAFITFIKSDSFCYTACPLMIGDRQCNKKVT--QSGNRWQCDRCNQEIDECDYRYLLQA 460
+ Y +CP+ C KKV + N ++C C+ + R+L
Sbjct: 299 KDG------TTRLWYQSCPM------CFKKVIIDEDSNIYRCIACDDAVVTPVLRFLFTC 346
Query: 461 QIQDQTGLTWVTAFQESGEEILGCPAKELYML-KYELQDDVRFGEIIRSRVFNQYLFRLK 519
D +G + E+G +++G ++L L K +L++ + F V F++
Sbjct: 347 LFIDYSGQIICNIYGENGTKLIGMTEQQLDALDKDKLKNALDF-------VATHKDFKIS 399
Query: 520 --IKEELYGDEQRVKITVIRADQVNYSSESRYLLD 552
K + Y E + V + VN+ E+ LLD
Sbjct: 400 GFYKSKTYNGEVKNTFNVTNIELVNHIDEANMLLD 434
>gi|68077085|ref|XP_680462.1| replication factor A-related protein [Plasmodium berghei strain
ANKA]
gi|56501391|emb|CAH98106.1| replication factor A-related protein, putative [Plasmodium berghei]
Length = 514
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 104/466 (22%), Positives = 202/466 (43%), Gaps = 47/466 (10%)
Query: 118 IAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRF 177
I+ + Y +W IKA+V K L + N + FS D+ D G I + + D++
Sbjct: 38 ISQITTYVSKWIIKAKVVNKSKLSTFKN---NNSFFSIDITDVHGDSISCKFWGSSADKW 94
Query: 178 YEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRH 237
+ IE+ +VY+ SKG + A +N +K+++E+ S + ++ + ++ S +
Sbjct: 95 FNNIELKKVYIFSKGRVSIANPKYNTVKHKYELTFNEDSEIHEVKDDGEIKIQKNISLVN 154
Query: 238 ISEIESAENNS--IVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGD 295
+ +I+ A + D+IGIV + P + K G + ++ + + D + S E++ W
Sbjct: 155 LRDIKIATKETPFTADLIGIVKHICPPNNLKTKQGNDIIKQNIIIVDDTKHSFEISFWDS 214
Query: 296 FCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLF--INPDFAE-AHELR 352
N + L+E ++ F +S+++ ND + G S + +N + E +
Sbjct: 215 NVNLIEKDLKEN-EIYIFTNISIRNW--NDMKNGTFGVTSSIEKVENLNDELKEKCLGIS 271
Query: 353 EWFDSGGKNAATVSISREIAAGGAKN-EIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIK 411
EW+++ GK ++ ++ + + H +S + N+ L + + R + K
Sbjct: 272 EWYNNNGKYEQFTNMKNILSNDVIQTPDKHYALSDV-NDVLAKISGTYTLVGRIKRIYWK 330
Query: 412 SDS----FCYTACPLMIGDRQCNKKVTQSGNR-------------------WQCDRCNQE 448
S F Y AC +C KK+ SG + C C++
Sbjct: 331 SKENEHRFYYPACT------KCKKKLLSSGQDSAQGVDYDNSNFNNEENCVYSCMNCDEN 384
Query: 449 IDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRS 508
+ Y Y D +G + AF + G +LG A+EL L + D + + +
Sbjct: 385 NVKPFYNYTFNFLFMDFSGSITLRAFSDEGFNLLGKKAEELKGLDEDTLDYLFNYDFL-- 442
Query: 509 RVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLI 554
+ +Y +++ +++Y +RV T +R YS S YLL+ I
Sbjct: 443 --YKEYKVVVRVSQKIYNGIERVNFTAMRIFPQKYSDIS-YLLNEI 485
>gi|221486920|gb|EEE25166.1| replication factor, putative [Toxoplasma gondii GT1]
Length = 410
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 118/204 (57%), Gaps = 10/204 (4%)
Query: 163 GEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCT 222
GEIR + F V ++ +EVGRVY S+G++ A K +N L +E+EI + + + + T
Sbjct: 52 GEIRASFFGRVAATWHPRLEVGRVYQFSRGTIDTANKKYNSLSHEYEIKFDDRAVI-VET 110
Query: 223 EEDDSIPKQQFS-FRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGM-ETQRRILNL 280
++D SIP Q FS + + + + S+VDVIG V S + +L +N E +R+ L++
Sbjct: 111 DDDPSIPAQIFSPLKLATLTDDSLVGSVVDVIGFVTSFCETHSVLARNTKDEVRRKELSI 170
Query: 281 KDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGK-SIGTIPSTQL 339
D SG +V +TLW + L++ V + P+L++K+ +V++++GK S+ + + +
Sbjct: 171 VDDSGAAVTVTLW----EQHATALKDSV-LAERPLLAIKAVRVSEYAGKVSLTSTSRSVI 225
Query: 340 FINPD-FAEAHELREWFDSGGKNA 362
++P EA L W+++ G+ A
Sbjct: 226 LVDPHGLEEADLLAAWWEAEGEKA 249
>gi|328700730|ref|XP_003241367.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Acyrthosiphon pisum]
Length = 323
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 115/235 (48%), Gaps = 26/235 (11%)
Query: 128 WAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVY 187
W+I ARV K D+ + G+GK F+ L+D EIR T F VDR + ++ VY
Sbjct: 17 WSITARVLKKSDVLPF--KHGNGKYFTTILIDK-TTEIRATAFGNDVDRLFSQLQENNVY 73
Query: 188 LISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENN 247
I G +K A K +N KN++EI + ++ D IP + I ++ S + N
Sbjct: 74 NIKNGEIKEADKAYNKSKNDYEIIFNGLTVIERSGVTD--IPSHP-QLKTIEKVFSMDKN 130
Query: 248 SIVDVIGIVISVNPSVPILRKNGMET--QRRILNLKDTSGRSVELTLWG----DFCNKEG 301
+++D IG++I + S I + N +T R I+ L D SG V +TLW +F EG
Sbjct: 131 TLIDTIGVIIKIEQSKKIKKINSNDTLILRNII-LADKSGVRVTVTLWDTEATNFNANEG 189
Query: 302 QKLQEMVDVGFFPVLSVKSGKVNDFSG-KSIGTIPSTQLFINPDFAEAHELREWF 355
+S+ GK+ D+ K I S+++ INP++ E L+ W+
Sbjct: 190 ------------DTMSIIGGKIIDYKNVKKISVTGSSKIEINPNWNETLHLQNWY 232
>gi|312072189|ref|XP_003138952.1| BRCA2 repeat family protein [Loa loa]
Length = 502
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 93/360 (25%), Positives = 157/360 (43%), Gaps = 53/360 (14%)
Query: 108 KNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRV 167
K+ + PI L PY W + +VT+ ++R RG +FSF +D G EIRV
Sbjct: 169 KSNKIGNVTPIKLLTPYCKNWRLCIKVTSVDEIR---CIRGQ-HIFSFLAVDDGGVEIRV 224
Query: 168 TCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDS 227
+ F + R +I ++Y I++ S+K A + ++ +++ E+ L S V CT+
Sbjct: 225 SAFGDIACRTATLICPEQMYYITRASVKMANRRYSRNEHDMEVVLRPDSEVTKCTDRPYI 284
Query: 228 I-PKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGR 286
+ PK F F I +++ + I E Q+R + + D SG
Sbjct: 285 LSPKVNFEFVRIHNLQNFIDTEI---------------------EELQKREIQVVDDSGY 323
Query: 287 SVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGK-SIGTIPSTQLFINPDF 345
V + LW GQK + + + VL+VK V F G S+ ++ S++L +P F
Sbjct: 324 YVAINLW-------GQKAKMFPNEQYQHVLAVKRLLVRCFQGTISLVSLASSKLLHDPHF 376
Query: 346 AEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRA 405
EA LR W+ K+ S+++ + HK + Q+K G + + A
Sbjct: 377 PEADALRFWYSENRKSFKPASMNQ-----VSSFHEHKWIKQLKPSLDGH-----FFNLTA 426
Query: 406 FITFIKSDSFCYTACPLMIGDRQCNKK--VTQSGNRWQCDRCNQEIDECDYRYLLQAQIQ 463
I+ I +++ Y CP C KK V + + + C +C +E Y Y L +
Sbjct: 427 MISSIFTENAVYKGCP------TCKKKLLVEKDNDLYICSKCGI-CNEYKYYYTLHVSAE 479
>gi|345484741|ref|XP_003425113.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Nasonia vitripennis]
Length = 167
Score = 97.8 bits (242), Expect = 1e-17, Method: Composition-based stats.
Identities = 49/132 (37%), Positives = 80/132 (60%), Gaps = 5/132 (3%)
Query: 128 WAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVY 187
W KARVT K D++ Y G +F+FDL+DS G +IR ++ +V+ F+E ++V +VY
Sbjct: 40 WTFKARVTHKTDIKNY----ASGNLFNFDLIDSSG-QIRCVVYHPLVEHFFEKVDVNKVY 94
Query: 188 LISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENN 247
L S LK + K +NH N +E+ L ST+ CT+ IP +++F ++ + + N
Sbjct: 95 LFSNVLLKASNKTYNHYDNLFELNLYEASTITECTDNAVDIPLNKYNFINLINLSDCKRN 154
Query: 248 SIVDVIGIVISV 259
I+DVIGI+ ++
Sbjct: 155 DIIDVIGIITNI 166
>gi|82594604|ref|XP_725495.1| replication protein A large subunit [Plasmodium yoelii yoelii
17XNL]
gi|23480523|gb|EAA17060.1| replication protein A large subunit, putative [Plasmodium yoelii
yoelii]
Length = 487
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 103/483 (21%), Positives = 203/483 (42%), Gaps = 75/483 (15%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
+ I+ + Y +W IKA+V K L + N + FS D+ D G I + +
Sbjct: 7 LFRISQITTYVSKWIIKAKVVNKSKLSTFKN---NNSFFSIDITDVHGDSISCKFWGSSA 63
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
D+++ IE+ +VY+ SKG + A +N +K+++E+ S + ++ + ++ S
Sbjct: 64 DKWFNNIELKKVYIFSKGRVSIANPKYNTVKHKYELTFNEDSEIHEVKDDGEIKIQKNIS 123
Query: 235 FRHISEIESAENNS--IVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTL 292
++ +I+ A + D+IGIV + P + K G + ++ + + D + S E++
Sbjct: 124 LVNLRDIKIATKETPFTADLIGIVKHICPPNNLKTKQGNDIIKQNIIIVDDTKHSFEISF 183
Query: 293 WGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLF--INPDFAE-AH 349
W N + L+E ++ F +S+++ ND + G S + +N + E
Sbjct: 184 WDSNVNLIEKDLKEN-EIYIFTNISIRNW--NDMKNGTFGVTSSIEKVENLNDELKEKCL 240
Query: 350 ELREWFDSGG--------KNAATVSISREIAAGGAKNEIHKTVSQIKNEG--LGRSEKPD 399
+ EW+++ G KN + + + A ++++ +++I +GR ++
Sbjct: 241 GISEWYNNNGKYEQFTNMKNILSNDVIQTPDKHYALSDVNDVLTKISGTYTLVGRIKRIY 300
Query: 400 WVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNR-------------------W 440
W + F Y AC +C KK+ SG +
Sbjct: 301 WKSKE------NEHRFYYPACT------KCKKKLLSSGQDNTQGGDYDNSNFNNEENCVY 348
Query: 441 QCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKEL---------YM 491
C C++ + Y Y D +G + AF + G +LG A+EL Y+
Sbjct: 349 SCMNCDENNVKPFYNYTFNFLFMDFSGSITLRAFSDEGFNLLGKKAEELKGLDEDSLDYL 408
Query: 492 LKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLL 551
Y+ ++ +Y +++ +++Y +RV T +R YS S YLL
Sbjct: 409 FNYDF-------------LYKEYKVVVRVSQKIYNGIERVNFTAMRIFPQKYSDIS-YLL 454
Query: 552 DLI 554
+ I
Sbjct: 455 NEI 457
>gi|389582888|dbj|GAB65624.1| replication factor A-related protein [Plasmodium cynomolgi strain
B]
Length = 485
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 104/479 (21%), Positives = 208/479 (43%), Gaps = 60/479 (12%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
+ I+ + Y +W IKA+V K L + N + FS D+ D G I + +
Sbjct: 7 LFRISQITTYVSKWIIKAKVVNKSKLSTFKN---NNSFFSIDVTDVHGDSISCKFWGSAA 63
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
D+++ IE+ +VY+ SKG + A +N +K+++E+ S + ++ + +++ S
Sbjct: 64 DKWFNNIELKKVYIFSKGRVSIANPKYNTVKHKYELTFNEDSEIHEVKDDGEIKIQKKIS 123
Query: 235 FRHISEIESAENNS--IVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTL 292
++ +I+ A + D+IGIV + + K G + ++ + + D + S E+
Sbjct: 124 LVNLRDIKIATKETPFTADLIGIVKHIGTISNLKTKQGNDITKQNIIIVDDTKHSFEIAF 183
Query: 293 WGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLF--INPDF-AEAH 349
W N +++E ++ F +S+++ ND + G S + +N + A+
Sbjct: 184 WDSNVNLIKDEIKEN-EIYVFTNISIRNW--NDMKNGTFGVTSSIEKIENLNEELKAKCT 240
Query: 350 ELREWFDSGGK--------NAATVSISREIAAGGAKNEIHKTVSQIKNEG--LGRSEKPD 399
+ EW+++ GK N + +S+ A ++++ +++I +GR ++
Sbjct: 241 MISEWYNTNGKYEQFTNMRNILSNDVSQIPDKHYALSDVNDVLAKISGTYTLVGRIKRIY 300
Query: 400 WVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNR------------------WQ 441
W + F Y AC +C KK+ SG +
Sbjct: 301 WKSKE------NEHRFYYPACT------KCKKKLLSSGQDNAPDNDYETNANDEESIVYS 348
Query: 442 CDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVR 501
C C++ + Y Y D +G + AF + G +LG A+EL L + D +
Sbjct: 349 CMNCDENNVKPFYNYTFNFLFMDFSGSITLRAFSDEGYNLLGKKAEELKSLDEDTLDYLF 408
Query: 502 FGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLD----LISK 556
+ + + +Y +++ +++Y +RV T +R +S S YLL+ LISK
Sbjct: 409 NYDFL----YKEYKVVVRVNQKVYNGIERVNFTAMRIFPQKHSDIS-YLLNEIQLLISK 462
>gi|221054360|ref|XP_002258319.1| replication protein a large subunit [Plasmodium knowlesi strain H]
gi|193808388|emb|CAQ39091.1| replication protein a large subunit, putative [Plasmodium knowlesi
strain H]
Length = 493
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 106/484 (21%), Positives = 203/484 (41%), Gaps = 70/484 (14%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
+ I+ + Y +W IKA+V K L + N + FS D+ D G I + +
Sbjct: 15 LFRISQITTYVSKWIIKAKVVNKTKLSTFKN---NNSFFSIDVTDVHGDSISCKFWGSSA 71
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
D+++ IE+ +VY+ SKG + A +N +K+++E+ S + ++ + +++ S
Sbjct: 72 DKWFNNIEMKKVYIFSKGRVSIANPKYNTVKHKYELTFNEDSEIHEVKDDGEIKIQKKIS 131
Query: 235 FRHISEIESAENNS--IVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTL 292
++ +I+ A + D+IGIV + + K G + ++ + + D + S E+
Sbjct: 132 LVNLRDIKIATKETPFTADLIGIVKHIGTVSNLKTKQGNDIAKQNIIIVDDTKHSFEIAF 191
Query: 293 WGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLF--INPDF-AEAH 349
W N +++E ++ F +++++ ND + G S + +N + A+
Sbjct: 192 WDSNVNLIKDEIKEN-EIYIFTNINIRNW--NDMKNGTFGVTSSIEKIENLNEELKAKCT 248
Query: 350 ELREWFDSGGKNAATVSISREIAAGGAKN--EIHKTVSQIKNEGLGRSEKPDWVTVRAFI 407
+ EW+++ GK ++ R I + E H +S + N+ L + + R
Sbjct: 249 MISEWYNTNGKYEQFTNM-RNILSNDVSQIPEKHYALSDV-NDVLAKISGTYTLVGRVKR 306
Query: 408 TFIKSDS----FCYTACPLMIGDRQCNKKVTQSGNR------------------WQCDRC 445
+ KS F Y AC +C KK+ SG + C C
Sbjct: 307 IYWKSKENEHRFYYPACS------KCKKKLLSSGQENVTDNDYETNANDEEGIVYSCMNC 360
Query: 446 NQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKEL---------YMLKYEL 496
++ + Y Y D +G + F + G +LG A+EL Y+ Y+
Sbjct: 361 DENNVKPYYNYTFNFLFMDFSGSMNIRVFSDEGYNLLGKKAEELKGLDEDNLNYLFNYDF 420
Query: 497 QDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLD---- 552
++ +Y +++ + LY +RV T I+ +S S YLL+
Sbjct: 421 -------------LYKEYKVVVRVNQRLYNGIERVNFTAIKIFPQKHSDIS-YLLNEIQL 466
Query: 553 LISK 556
LISK
Sbjct: 467 LISK 470
>gi|328865102|gb|EGG13488.1| putative ssDNA-binding protein [Dictyostelium fasciculatum]
Length = 669
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 99/396 (25%), Positives = 177/396 (44%), Gaps = 41/396 (10%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLD---SDGGEIRVTCF- 170
I I AL+ G + I A V K D++ + N G++FS + D S I+ T F
Sbjct: 204 ICDIDALSEGMGSYTICAVVKNKSDIKEWKNVTSSGRLFSVEFADDSPSTCNTIKATVFG 263
Query: 171 NAVVDRFYEIIEVGRVYLIS-KGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIP 229
+ ++ +E G+ Y++S G ++ + FN+ K+++E+ L +T+ T++ I
Sbjct: 264 DPYCASLHQQLEAGKTYMVSGSGGVRKNSQKFNNTKHQYELTLGRDTTITPVTDQSQVIK 323
Query: 230 KQ---QFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRIL-----NLK 281
+F F I+ + S N +VDV+G V SV+ + I K + ++L ++
Sbjct: 324 SAGVVKFQFTPINSLVSLGANMMVDVLGEVTSVSTPIDITTKATERAKSKVLPKWAITIR 383
Query: 282 DTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFI 341
D + +E++ WGD + K + VG ++ +K+ K+ F+G S+ S+++ +
Sbjct: 384 DNTNSGIEVSFWGD----DVAKYLNQITVGM--IVGIKNAKLTQFNGHSLSFGYSSEIVL 437
Query: 342 NPDFAEAHE-LREWF-DSGGKNAATVSISREIAAGGAKNEIHKTVS-----QIKNEGLGR 394
+P + +E R+W + G N A+++ R G + N+ ++ I+ E
Sbjct: 438 DPRHLDQYEGFRQWIAHNSGTNCASLT-QRSTFTGNSTNKDAPVLTVAELLAIQTEPFDA 496
Query: 395 SEKPDWVTVR------AFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQE 448
+ P+ V AF I D+ + G C KKV G +C E
Sbjct: 497 NNNPNQYVVHGTIRRGAFAKEISRDNGPTVSTCWYEGCAGCFKKV--CGGLPKC-----E 549
Query: 449 IDECDYRYLLQAQIQDQTG-LTWVTAFQESGEEILG 483
+ L +I D TG L+ V FQ ILG
Sbjct: 550 APRMTNIWKLPIKIADDTGTLSNVDLFQSIALPILG 585
>gi|156097108|ref|XP_001614587.1| replication factor A-related protein [Plasmodium vivax Sal-1]
gi|148803461|gb|EDL44860.1| replication factor A-related protein, putative [Plasmodium vivax]
Length = 485
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 104/479 (21%), Positives = 208/479 (43%), Gaps = 60/479 (12%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
+ I+ + Y +W IKA+V K L + N + FS D+ D G I + +
Sbjct: 7 LFRISQITTYVSKWIIKAKVVNKSKLSTFKN---NNSFFSIDVTDVHGDSISCKFWGSAA 63
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
D+++ IE+ +VY+ SKG + A +N +K+++E+ S + ++ + +++ S
Sbjct: 64 DKWFNNIELKKVYIFSKGRVSIANPKYNTVKHKYELTFNEDSEIHEVKDDGEIKIQKKIS 123
Query: 235 FRHISEIESAENNS--IVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTL 292
++ +I+ A + D+IGIV + + K G + ++ + + D + S E+
Sbjct: 124 LVNLRDIKIATKETPFTADLIGIVKHIGTISNLKTKQGNDITKQNIIIVDDTKHSFEIAF 183
Query: 293 WGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLF--INPDF-AEAH 349
W N +++E ++ F +S+++ ND + G S + +N + A+
Sbjct: 184 WDSNVNLIRDEIKEN-EIYIFTNISIRNW--NDMKNGTFGVTSSIEKIENLNEELKAKCT 240
Query: 350 ELREWFDSGGK--------NAATVSISREIAAGGAKNEIHKTVSQIKNEG--LGRSEKPD 399
+ EW+++ GK N + +S+ A ++++ +++I +GR ++
Sbjct: 241 MISEWYNTNGKYEQFTNMRNILSNDVSQIPDKHYALSDVNDVLAKISGTYTLVGRIKRIY 300
Query: 400 WVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNR------------------WQ 441
W + F Y AC +C KK+ SG +
Sbjct: 301 WKSKE------NEHRFYYPACT------KCKKKLLSSGQDNATDNDYETNANDEESIVYS 348
Query: 442 CDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVR 501
C C++ + Y Y D +G + AF + G +LG A+EL L + D +
Sbjct: 349 CMNCDENNVKPFYNYTFNFLFMDFSGSITLRAFSDEGYNLLGKKAEELKGLDEDTLDYLF 408
Query: 502 FGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLD----LISK 556
+ + + +Y +++ +++Y +RV T +R +S S YLL+ LISK
Sbjct: 409 NYDFL----YKEYKVVVRVNQKVYNGIERVNFTAMRIFPQKHSDIS-YLLNEIQLLISK 462
>gi|237831865|ref|XP_002365230.1| hypothetical protein TGME49_060570 [Toxoplasma gondii ME49]
gi|211962894|gb|EEA98089.1| hypothetical protein TGME49_060570 [Toxoplasma gondii ME49]
Length = 410
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 117/204 (57%), Gaps = 10/204 (4%)
Query: 163 GEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCT 222
GEIR + F V ++ +EVGRVY S+G++ A K +N L +E+EI + + + +
Sbjct: 52 GEIRASFFGRVAATWHPRLEVGRVYQFSRGTIDTANKKYNSLSHEYEIKFDDRAVI-VEM 110
Query: 223 EEDDSIPKQQFS-FRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGM-ETQRRILNL 280
++D SIP Q FS + + + + S+VDVIG V S + +L +N E +R+ L++
Sbjct: 111 DDDPSIPAQIFSPLKLATLTDDSLVGSVVDVIGFVTSFCETHSVLARNTKDEVRRKELSI 170
Query: 281 KDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGK-SIGTIPSTQL 339
D SG +V +TLW + L++ V + P+L++K+ +V++++GK S+ + + +
Sbjct: 171 VDDSGAAVTVTLW----EQHATALKDSV-LAERPLLAIKAVRVSEYAGKVSLTSTSRSVI 225
Query: 340 FINPD-FAEAHELREWFDSGGKNA 362
++P EA L W+++ G+ A
Sbjct: 226 LVDPHGLEEADLLAAWWEAEGEKA 249
>gi|221506608|gb|EEE32225.1| replication factor, putative [Toxoplasma gondii VEG]
Length = 410
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 117/204 (57%), Gaps = 10/204 (4%)
Query: 163 GEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCT 222
GEIR + F V ++ +EVGRVY S+G++ A K +N L +E+EI + + + +
Sbjct: 52 GEIRASFFGRVAATWHPRLEVGRVYQFSRGTIDTANKKYNSLSHEYEIKFDDRAVI-VEM 110
Query: 223 EEDDSIPKQQFS-FRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGM-ETQRRILNL 280
++D SIP Q FS + + + + S+VDVIG V S + +L +N E +R+ L++
Sbjct: 111 DDDPSIPAQIFSPLKLATLTDDSLVGSVVDVIGFVTSFCETHSVLARNTKDEVRRKELSI 170
Query: 281 KDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGK-SIGTIPSTQL 339
D SG +V +TLW + L++ V + P+L++K+ +V++++GK S+ + + +
Sbjct: 171 VDDSGAAVTVTLW----EQHATALKDSV-LAERPLLAIKAVRVSEYAGKVSLTSTSRSVI 225
Query: 340 FINPD-FAEAHELREWFDSGGKNA 362
++P EA L W+++ G+ A
Sbjct: 226 LVDPHGLEEADLLAAWWEAEGEKA 249
>gi|321465251|gb|EFX76253.1| hypothetical protein DAPPUDRAFT_249126 [Daphnia pulex]
Length = 182
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 92/162 (56%), Gaps = 10/162 (6%)
Query: 182 EVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEI 241
+G+VY IS+ LK A K ++ +KN++E+ +TV C +E IP F+F I+++
Sbjct: 28 HIGKVYYISQAKLKAANKQYSKIKNDYEMTFNKNTTVYTC-DEATKIPPITFNFLPIAQL 86
Query: 242 ESAENNSIVDVIGIVISVNPSVPILRKNG-METQRRILNLKDTSGRSVELTLWGDFCNKE 300
+ + +S++DVIG+V S I K E + R + + D++ V LTLWG
Sbjct: 87 PNMDKDSVIDVIGVVKSAKDVRCITSKTTKTELKLREVQMVDSTNAEVNLTLWG------ 140
Query: 301 GQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFIN 342
KL E D PV+++K K++DF G+S+GT+ ST + +N
Sbjct: 141 --KLAEEFDATSKPVVALKGAKLSDFGGRSLGTVSSTVVQLN 180
>gi|302780169|ref|XP_002971859.1| hypothetical protein SELMODRAFT_412540 [Selaginella moellendorffii]
gi|300160158|gb|EFJ26776.1| hypothetical protein SELMODRAFT_412540 [Selaginella moellendorffii]
Length = 300
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 88/311 (28%), Positives = 138/311 (44%), Gaps = 45/311 (14%)
Query: 224 EDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDT 283
+D PK + I E+ E ++ VDV+G+V V + + +G +RR L L D
Sbjct: 8 DDVGFPKIVLDRKTILEVSEMEPDTFVDVVGVVTLVGLTNVTCKDSGTLIKRRTLCLGDE 67
Query: 284 SGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINP 343
SGRS+++ LW +EG K+ E + G L VK V T+ ST FI+
Sbjct: 68 SGRSIDVCLWDSKAEEEGSKIYEKFERGEKQFLCVKGEIVASVRAWYSVTLDSTS-FIHV 126
Query: 344 DFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTV 403
S G N A + T+S++ L E D +
Sbjct: 127 T-----------GSSGSNLAVRT---------------TTISEMMGLNLKVMESSDTYRI 160
Query: 404 RAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQ 463
A I I+ D+F Y AC ++ RQC KKV+ + EI E D++Y L I+
Sbjct: 161 TANIRDIRIDNFSYPACTRVVNGRQCGKKVSSA-----------EIQEVDHKYALHVCIE 209
Query: 464 DQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFG-EIIRSRVFNQYLFRLKIK- 521
D + W AFQE+ E++G PA++ ++ E D + +RS+V+ + R+ ++
Sbjct: 210 DSSQYVWAIAFQEAARELVGLPAQDFASMRDENYDVFSAHLDAVRSKVYTLKINRIAMQG 269
Query: 522 -----EELYGD 527
E+LY D
Sbjct: 270 ALDFVEKLYVD 280
>gi|124506649|ref|XP_001351922.1| replication factor A-related protein, putative [Plasmodium
falciparum 3D7]
gi|23504949|emb|CAD51733.1| replication factor A-related protein, putative [Plasmodium
falciparum 3D7]
Length = 484
Score = 95.5 bits (236), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 92/455 (20%), Positives = 198/455 (43%), Gaps = 55/455 (12%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
+ I+ + Y +W IKA+V K L + N + FS D+ D G I + +
Sbjct: 7 LFRISQITTYVSKWIIKAKVVNKTKLSTFKN---NNSFFSIDVTDVHGDSISCKFWGSSA 63
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
D+++ +IE+ +VY+ SKG + A +N +K+++E+ S + ++ + +++ S
Sbjct: 64 DKWFNVIELKKVYIFSKGRVSIANPKYNTVKHKYELTFNEDSEIHEVKDDGEIKIQKKIS 123
Query: 235 FRHISEIESAENNS--IVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTL 292
++ +I+ A + D+IGIV + + K G + ++ + + D + S E++
Sbjct: 124 LVNLRDIKIATKETPFTADLIGIVKHIGTVSNLKTKQGNDIAKQNIIIVDDTKHSFEISF 183
Query: 293 WGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLF--INPDF-AEAH 349
W N +++ E ++ F +++++ ND + G S + +N + A+
Sbjct: 184 WDSNVNLIKEEIVEN-EIYIFTNINIRNW--NDMKNGTFGVTSSIEKMENLNDELKAKCA 240
Query: 350 ELREWFDSGGKNAATVSISREIAAGGAKN--EIHKTVSQIKN---------EGLGRSEKP 398
++ +W+++ GK ++ R I + + H ++S + + +GR ++
Sbjct: 241 KISQWYNNSGKYEQFTNM-RNILSNDVTQTPDKHYSISDVSDVLSKISGTYTLIGRIKRI 299
Query: 399 DWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNR----------------WQC 442
W + F Y AC +C KK+ SG+ + C
Sbjct: 300 YWKSKE------NEHRFYYPAC------MKCKKKLLSSGHDNNMDNEFDNPEEDNIVYSC 347
Query: 443 DRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRF 502
C++ + Y Y D +G + AF + G +LG A+EL L + D +
Sbjct: 348 MNCDENNVKPFYNYTFNFLFMDFSGSIILRAFSDEGYNLLGKKAEELKNLDEDTLDYLFN 407
Query: 503 GEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIR 537
+ + + +Y +++ ++ Y +RV T ++
Sbjct: 408 YDFL----YKEYKIVVRVNQKAYNGIERVNFTAMK 438
>gi|390352290|ref|XP_800067.3| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
isoform 2 [Strongylocentrotus purpuratus]
Length = 275
Score = 95.5 bits (236), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 57/74 (77%), Gaps = 1/74 (1%)
Query: 111 APARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCF 170
+P ++ PI++L PYQ RW IKARVT K +R ++NARG+GK+FS DLLD GEIR T F
Sbjct: 183 SPKKVQPISSLTPYQNRWTIKARVTNKTAIRTWSNARGEGKLFSMDLLDQS-GEIRCTAF 241
Query: 171 NAVVDRFYEIIEVG 184
+VD++YE+IE+G
Sbjct: 242 KDMVDKYYEMIEIG 255
>gi|391333842|ref|XP_003741319.1| PREDICTED: replication factor A protein 1-like [Metaseiulus
occidentalis]
Length = 269
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 117/247 (47%), Gaps = 24/247 (9%)
Query: 130 IKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLI 189
I+ RV +K LR + A +GK+F+F+L D + GEI + + + I +G Y I
Sbjct: 36 IEGRVISKSPLREWKKADAEGKLFTFNLTD-NSGEISCIVSGELAEVLFPTISIGSCYEI 94
Query: 190 SKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSI 249
S KP+ ++ + EI L + + E D +PK+ S ISEI ENN
Sbjct: 95 SGFRPKPSHPQYSTTSHSCEIQLSKITRIKKI--EGDFLPKKPQSLIKISEILDIENNKS 152
Query: 250 VDVIGIVISVN-PSVPILRKNGMETQRRILNLKDTSGRSVELTLWGD----FCNKEGQKL 304
VD+I IV V P + R M ++ +L L D S R+V L LWG+ KEG
Sbjct: 153 VDLIAIVYDVMIPQMLACRDGQMREKQNVL-LVDDSMRTVSLGLWGESIRTLDGKEGH-- 209
Query: 305 QEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLF--INPDFA-EAHELREWFDSGGKN 361
V+++++ V +++GK + + S + D E EL +W+D G +
Sbjct: 210 ----------VINIRAAAVKEYNGKKLLSTSSASILKHCESDLTREEQELADWWDREGHS 259
Query: 362 AATVSIS 368
+ ++S
Sbjct: 260 SEFAALS 266
>gi|240848761|ref|NP_001155514.1| replication protein A 70 kDa DNA-binding subunit-like
[Acyrthosiphon pisum]
gi|239792426|dbj|BAH72558.1| ACYPI003269 [Acyrthosiphon pisum]
Length = 325
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 119/250 (47%), Gaps = 26/250 (10%)
Query: 128 WAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVY 187
W+I ARV K ++ Y RG GK F+ L+D EIR F DR + ++ VY
Sbjct: 17 WSITARVLKKSNVLPYQKERGTGKYFTAILIDK-TTEIRAKAFGDDCDRLFSQLQENNVY 75
Query: 188 LISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENN 247
I G ++ A K +N KN++EI T+ + D IP + I + S + N
Sbjct: 76 NIKNGQIQLADKKYNKSKNDYEIIFNETTIIIQKFGVTD-IPSHP-QLKTIENVFSMDQN 133
Query: 248 SIVDVIGIVISVNPSVPILRKNGMETQR-RILNLKDTSGRSVELTLWG----DFCNKEGQ 302
+++D IG++I + S I + N +T + R + L D + RSV +TLW +F EG
Sbjct: 134 TLIDTIGVIIEIEQSKEIKKNNSNDTYKLRNIILADCT-RSVTVTLWDIDATNFNANEG- 191
Query: 303 KLQEMVDVGFFPVLSVKSGKVNDFSG-KSIGTIPSTQLFINPDFAEAHELREWFDSGGK- 360
++S+ GK+ ++ I S+++ INP + E +L+ W+ K
Sbjct: 192 -----------DIMSIMGGKIINYKNVNKISVTGSSEIIINPYWNETFDLQIWYKEFEKK 240
Query: 361 ---NAATVSI 367
N + VSI
Sbjct: 241 KLLNLSQVSI 250
>gi|15219131|ref|NP_175703.1| Nucleic acid-binding, OB-fold-like protein [Arabidopsis thaliana]
gi|12324642|gb|AAG52278.1|AC019018_15 putative replication protein; 94555-97079 [Arabidopsis thaliana]
gi|332194750|gb|AEE32871.1| Nucleic acid-binding, OB-fold-like protein [Arabidopsis thaliana]
Length = 566
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 91/421 (21%), Positives = 181/421 (42%), Gaps = 31/421 (7%)
Query: 118 IAALNPYQGRWAIKARVTAKGDLRRYNN-ARGDGKVFSFDLLDSDGGEIRVTCFNAVVDR 176
I L P++ W I+ ++ L +N+ +G G + L D DG +I+ + +
Sbjct: 10 IKNLKPFKTSWCIQVKI-----LHAWNHYTKGSGMSYEMMLADEDGNKIQAGIKKEHLLK 64
Query: 177 FYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFR 236
+++G +I + S+ A + + + I +++++ D I +F
Sbjct: 65 LQRYVKIGHWTIIEEFSVTKASGLYRSTTHPYRINIQSSTRFSNSPTISDEIWLDLVNFN 124
Query: 237 HISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDF 296
+ + + N +V+VIG +++V + +L G T++ L+DT + +LWG F
Sbjct: 125 DVLS-GTLDQNKLVNVIGQLVNVG-EIQLLDVQGKPTKKIDFQLRDTDDNRLPCSLWGKF 182
Query: 297 CNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIP----STQLFINPDFAEAHELR 352
++ + +E VG + ++ K+ + K I +I ++++FINP E E +
Sbjct: 183 ADQIHKVSKE--SVGGIVICLIRWAKLGHY--KEIRSISNAFDASEVFINPILTEVEEFK 238
Query: 353 EWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKS 412
S G + + E K + L S + + V + I I
Sbjct: 239 NLLPSDGLALTIMEPKPRFQPLRVREERSKQFERKTIAELKASFEVEKVKIICSILSIDL 298
Query: 413 DSFCYTACPLMIGDRQCNKKVTQSGNR---------WQCDRCNQEIDECDYRYLLQAQIQ 463
D Y + +CNKKV +S ++CD+C ++ + RY L I
Sbjct: 299 DYSWYYYAHI-----KCNKKVFKSKKTLSSGAKKIIYRCDKCATDVTSIEARYWLHLDIM 353
Query: 464 DQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVR-FGEIIRSRVFNQYLFRLKIKE 522
D TG + + F E I+GCPA EL + E D+ + +++++ + Y F + +++
Sbjct: 354 DNTGESKLMLFDSFVEPIIGCPATELLDVTNEQIDEPQPLPDVVKNIIGKTYQFLVCVEQ 413
Query: 523 E 523
+
Sbjct: 414 D 414
>gi|156312429|ref|XP_001617826.1| hypothetical protein NEMVEDRAFT_v1g225758 [Nematostella vectensis]
gi|156195990|gb|EDO25726.1| predicted protein [Nematostella vectensis]
Length = 115
Score = 91.3 bits (225), Expect = 1e-15, Method: Composition-based stats.
Identities = 44/112 (39%), Positives = 66/112 (58%), Gaps = 4/112 (3%)
Query: 382 KTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQ 441
K +SQIKNE LG EK D+++V+ + + ++ Y ACP +CNKKV + + +
Sbjct: 6 KFLSQIKNEQLGMGEKADYISVKGVCVYFRRENCMYKACP----SEECNKKVIEEDSGFY 61
Query: 442 CDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLK 493
C++C ++ YR +L A + D TG WVT FQES E +LG A +L +K
Sbjct: 62 CEKCGRKYPNYKYRLILSAHLADFTGSQWVTCFQESAEALLGRSASDLGQMK 113
>gi|442751523|gb|JAA67921.1| Hypothetical protein [Ixodes ricinus]
Length = 151
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 91/159 (57%), Gaps = 16/159 (10%)
Query: 282 DTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFI 341
+ SG+ V TLWG+ +K Q PV+++K +V+DF G+S+ + S+ + +
Sbjct: 2 NMSGKVVSATLWGEDADKFDGSRQ--------PVMAIKGARVSDFGGRSLSVLSSSTVIV 53
Query: 342 NPDFAEAHELREWFDSGGK--NAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPD 399
NPD EA++LR WFDS G+ + A++S R G A N KT+ ++K+E LG+ +K D
Sbjct: 54 NPDIPEAYKLRGWFDSEGQALDGASISDLRSGGTGSATN--WKTLYEVKSENLGQGDKAD 111
Query: 400 WVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGN 438
+ + A + +++ ++ Y ACP + CNKKV N
Sbjct: 112 YFSCVATVVYLRKENSMYQACPT----QDCNKKVIDQQN 146
>gi|330798256|ref|XP_003287170.1| hypothetical protein DICPUDRAFT_94345 [Dictyostelium purpureum]
gi|325082822|gb|EGC36292.1| hypothetical protein DICPUDRAFT_94345 [Dictyostelium purpureum]
Length = 650
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 77/281 (27%), Positives = 134/281 (47%), Gaps = 37/281 (13%)
Query: 63 PGSFSTP--NSGTFRAPNAGSIVRSFQPTVQPPYQPPPNFRNHGPILKNEAPARIIPIAA 120
P STP N+ P+ GS+ P+QP + P ++ + + IA
Sbjct: 157 PNLTSTPTKNNNFIPKPSQGSL----------PFQPQQKYTKPQPDSESVLRSHVSDIAD 206
Query: 121 LNPYQGRWAIKARVTAKGDLRRYNNARGD--GKVFSFDLLDSDGGEIRVTCFNA------ 172
+N + IKA V + + +N GD G++FS L DS G I+ TCF++
Sbjct: 207 INEHSKEITIKAMVMERMPRKSWNKG-GDNSGELFSVILQDSTGS-IKATCFSSKSNPLP 264
Query: 173 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQ 232
D YE++E +V+ I K A K+F+ L +++EI A++ + EE D
Sbjct: 265 AFDDLYEMLEKKKVFKIQGFYAKKANKDFSRLPHDYEITFNASTAIVPVDEEMDIF---- 320
Query: 233 FSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTL 292
+ FR+I ++ + E + DVIG+V N + KN + + +N+ DT+G +E+
Sbjct: 321 YDFRNIEDLSNVETGTTCDVIGVVSDCNLNQRFTSKNNKQLVKSSININDTTG-IIEVIF 379
Query: 293 WGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVN-DFSGKSIG 332
W + + +DV ++++K+ KVN +F+ KS+
Sbjct: 380 WNEAAD---------IDVKDGDIIAIKNAKVNTNFNNKSLS 411
>gi|402073226|gb|EJT68830.1| hypothetical protein GGTG_13608 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 230
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 69/99 (69%), Gaps = 2/99 (2%)
Query: 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
A + PI +++PYQ +WAIKARVT+K D+R ++ GK+FS +LLD + GEI+ T FN
Sbjct: 119 AVVYPIESISPYQHKWAIKARVTSKSDIRTWHKPSEKGKLFSVNLLD-ETGEIKATGFNN 177
Query: 173 VVDRFYEIIEVGRVYLISKGS-LKPAQKNFNHLKNEWEI 210
D+FYE+++ +VY IS ++ A+K F +L N++E+
Sbjct: 178 ECDKFYELLQENQVYYISSPCRVQMAKKQFTNLPNDYEL 216
>gi|190688744|gb|ACE86407.1| putative replication protein [Sorghum bicolor]
Length = 213
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 69/104 (66%), Gaps = 3/104 (2%)
Query: 457 LLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLF 516
LL QIQD TG+T+ TAFQ +GE I G A+EL+M++ QDD+RF EI+++ + +YLF
Sbjct: 44 LLLCQIQDHTGVTYATAFQAAGEAIFGHTAQELFMIQNVEQDDMRFTEIMQAVLRREYLF 103
Query: 517 RLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKSFRK 560
+LKI EE Y EQRV ++I +++ E+ LL +S+ K
Sbjct: 104 KLKIYEETYNGEQRVICSIIGVEKLE---ETNNLLKDVSRPILK 144
>gi|238585702|ref|XP_002390945.1| hypothetical protein MPER_09698 [Moniliophthora perniciosa FA553]
gi|215454988|gb|EEB91875.1| hypothetical protein MPER_09698 [Moniliophthora perniciosa FA553]
Length = 175
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 64/107 (59%), Gaps = 1/107 (0%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
+ PI LNPYQ W IKARVT K D++ +N G GK F L+D + GEIR T FNAV
Sbjct: 60 VDPIQTLNPYQNNWTIKARVTRKSDMKARSNQYGVGKSFYVTLMD-ESGEIRGTAFNAVA 118
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLC 221
D Y ++ G+ Y ISK + A + + +++E++LE + ++ C
Sbjct: 119 DDLYGRLDEGKAYYISKAEVILASDKVSDVSSDYELWLERNTEIEEC 165
>gi|440301626|gb|ELP94012.1| replication factor A 1, rfa1, putative [Entamoeba invadens IP1]
Length = 460
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 89/327 (27%), Positives = 145/327 (44%), Gaps = 32/327 (9%)
Query: 111 APARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCF 170
+ A+I P A L Q + IK RV +K D +Y G +F+F L D +GGE+R T F
Sbjct: 143 SKAKITPFAMLTAMQNKSTIKGRVISKQDKFKY----AKGNLFNFVLQDKEGGELRATAF 198
Query: 171 NAVVDRFYEIIEVGRVYLISKGSLK-PAQKNFNHLKN-EWEIFLEATSTVDLCTEEDDSI 228
N + D Y+ I+VG Y ISKG K P KN+ K + ++ + +TV +E +I
Sbjct: 199 NDMCDALYDTIQVGSTYYISKGEFKVPTNKNYRSAKMIDVDMVVGRYTTVQKAEDELPAI 258
Query: 229 PKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSV 288
S IS++ ++ +S+ D+ G+++ V + KN + RR + + D + V
Sbjct: 259 S----SITAISDLLTSPVDSLYDICGVLVQVKDEDHL--KN--DKIRRSILVADQTKHVV 310
Query: 289 ELTLWGDFCNKEGQKLQEMVDVGFFPV-LSVKSGKVNDFSGKSIGTIPSTQLFINPDFAE 347
+ WG+ ++L+ + F V L + ++S +S I Q+ + E
Sbjct: 311 SINFWGEDA-AIPERLEPLKTYVFRQVQLREFRTRNMNYSSRSSSIIEGEQI---AKYDE 366
Query: 348 AHELREWFDSGGKNAATVSISREI-----------AAGGAKNEIHKTVSQIK-NEGLGRS 395
+ + D + R + G K E K K NE + S
Sbjct: 367 TSLVHKMLDESKTSTGEYVFDRPTFIYLDETTTADSVQGTKTEQSKLFKLSKFNEAVLAS 426
Query: 396 EKPDWVTVRAFITFIKSDS-FCYTACP 421
E+ V A+ T K+DS F Y +CP
Sbjct: 427 EEDIKGNVYAYFTSFKTDSTFYYVSCP 453
>gi|340387334|ref|XP_003392162.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like,
partial [Amphimedon queenslandica]
Length = 91
Score = 88.2 bits (217), Expect = 1e-14, Method: Composition-based stats.
Identities = 42/92 (45%), Positives = 64/92 (69%), Gaps = 2/92 (2%)
Query: 128 WAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVY 187
W IKARVT+K LR YNN+RG+G++ + + +D G EIR T FN DRF+ +EV +VY
Sbjct: 1 WTIKARVTSKPPLRHYNNSRGEGRILTLEFVDHSG-EIRATAFNEDADRFFPNVEVNKVY 59
Query: 188 LISKGSLKPAQKNFNHLKNEWEIFLEATSTVD 219
+S+G +KPA K + + N++E+ L A +T++
Sbjct: 60 YVSRGRIKPANKIY-YANNDYELTLGAETTIE 90
>gi|348670089|gb|EGZ09911.1| hypothetical protein PHYSODRAFT_305275 [Phytophthora sojae]
Length = 441
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 116/242 (47%), Gaps = 35/242 (14%)
Query: 117 PIAALNPYQG-RWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVD 175
PI L+P G +W + AR+ +R+++NA G G + +L DG
Sbjct: 5 PIRDLSPVLGVQWEVVARIAFLSPVRQWSNANGRGHNLAT-ILRGDG------------- 50
Query: 176 RFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSF 235
V+L + G ++ A + F + +EI L ++++V E+DDSI ++F
Sbjct: 51 ----------VFLFAGGRIRKAARGFGKPNHTYEIGLSSSASV-TPVEDDDSIEHVDYAF 99
Query: 236 RHISEIESAENNSIVDVIGIVISVNPSVPIL-RKNGMETQRRILNLKDTSGRSVELTLWG 294
IS++ A+ ++ VD++ +++ V ++ RK+G++ +R L L D+S + TLW
Sbjct: 100 TTISDLAHADAHAQVDILAMIMDVGVLDKVVDRKDGVQVKRE-LKLTDSSNVEIVCTLWN 158
Query: 295 DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREW 354
F + + + VN+F G+S+ T+ T + NP+ + L+EW
Sbjct: 159 KFAEVD-------YTAALHQPYAFRQVMVNEFRGRSLSTLSYTMVVPNPNLPDVITLQEW 211
Query: 355 FD 356
FD
Sbjct: 212 FD 213
>gi|440803406|gb|ELR24309.1| replication protein A1, putative, partial [Acanthamoeba castellanii
str. Neff]
Length = 1326
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 119/246 (48%), Gaps = 19/246 (7%)
Query: 115 IIPIAALNPYQGRWAIKARVT-AKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAV 173
+ P++ALNP+ W I+ RV +L ++ +G+ F DL+D +G IR +NAV
Sbjct: 996 LTPVSALNPFSVAWTIEVRVVYLPTELFKWQKNGKEGRHFCCDLMDKNGDCIRAVAYNAV 1055
Query: 174 VDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEED--DSIPKQ 231
D + ++ ++Y IS G K A K ++ L +++++ T+ + T+ + P Q
Sbjct: 1056 ADDIFPRLKENQIYRISGGHFKVANKKYSKLSHDYDLTFATTTLIIPITDPTRIAAFPTQ 1115
Query: 232 QFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELT 291
Q F +S++ S E++ + +G + S+ R G +R + L+D + VELT
Sbjct: 1116 QPDFLPLSQLASREHDEV--AVGPLGSIT-----ARTTGNVIPKRSVFLEDQTRSIVELT 1168
Query: 292 LWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTI--PSTQLFINPD-FAEA 348
LW D K L + D VL+V VN F G + + S +L +N F +
Sbjct: 1169 LWYDDA-KNAATLFKNGD-----VLAVTGAWVNRFRGHTTLSTKHASYKLHVNSSAFPQT 1222
Query: 349 HELREW 354
L +W
Sbjct: 1223 AALVQW 1228
>gi|348685631|gb|EGZ25446.1| hypothetical protein PHYSODRAFT_479463 [Phytophthora sojae]
Length = 263
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 115/246 (46%), Gaps = 14/246 (5%)
Query: 112 PARIIPIAALNP-YQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCF 170
P + IA NP + W+ R+ A+ +R + + R G++F + D D +RVT F
Sbjct: 16 PLPVFTIADFNPEIRAPWSFIGRILARSPVRTFKSWRASGRLFRVHVTDRDDATLRVTVF 75
Query: 171 NAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPK 230
N +RF++++ G V S G + A F + E+ + + T+ D P+
Sbjct: 76 NEGAERFFDVLSPGAVCSFSNGRITTANSVFAPPSSPIELSFGGDANIHRVTDGPD-YPE 134
Query: 231 QQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVEL 290
F++ ++++ +A V GIV+ V P I + G +T +R L D S V
Sbjct: 135 PAFAYIRLADLPAATPT----VSGIVVDVGPLRDITTRAGRKTLKREFLLVDDSNVDVVC 190
Query: 291 TLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSG-KSIGTIPSTQLFINPDFAEAH 349
T WG ++ LQ P+L +++G+++D+ +S+ + L +P + +
Sbjct: 191 TAWGQDADELQDSLQG------HPIL-IQNGQISDYMNIRSVDIGVRSTLLHHPATSRSA 243
Query: 350 ELREWF 355
+L+ WF
Sbjct: 244 DLQRWF 249
>gi|351700393|gb|EHB03312.1| Replication protein A 70 kDa DNA-binding subunit [Heterocephalus
glaber]
Length = 162
Score = 87.0 bits (214), Expect = 2e-14, Method: Composition-based stats.
Identities = 55/166 (33%), Positives = 88/166 (53%), Gaps = 8/166 (4%)
Query: 365 VSISREIAAG-GAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLM 423
VSIS + G GA N KT+ ++K+E LG+ +K D+ + A + ++ ++ Y AC
Sbjct: 2 VSISDLKSWGLGASNNNWKTLYEVKSENLGQGDKADYFSSVATVVYLHKENCMYLAC--- 58
Query: 424 IGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEIL 482
+ CNKKV Q + C++C+ E YR +L I D WVT FQES E IL
Sbjct: 59 -STQDCNKKVIDQQNGLYCCEKCDHEFPNFKYRMILLGNILDFQENQWVTCFQESAEAIL 117
Query: 483 GCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDE 528
G Y+ + + ++ F E ++ F ++F++++K E Y DE
Sbjct: 118 G--QNTAYLGELKEKNKQAFEEGFQNANFRSFMFKIRVKLETYNDE 161
>gi|357484727|ref|XP_003612651.1| Replication factor A protein [Medicago truncatula]
gi|355513986|gb|AES95609.1| Replication factor A protein [Medicago truncatula]
Length = 477
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 84/356 (23%), Positives = 158/356 (44%), Gaps = 38/356 (10%)
Query: 140 LRRYNNARGDGKVFSFDLLDSDGGEIRVT-CFNAVVDRFY-----EIIEVGRVYLISKGS 193
L + +NA D K+ ++RV C +A + R + ++++ G++Y+IS
Sbjct: 23 LNKLSNAAPDTKI-----------KVRVANCIHATIPRRFSPSLKKVLQEGKIYVISHYE 71
Query: 194 LKPAQKNFNHLKNEWEIF-LEATSTVDLCTEEDDSIPKQQFSFRHISE-IESAENNSIVD 251
+ ++ + ++N + + V +D++IP+ F F + ++ I+ + D
Sbjct: 72 VSKNKEKYAVVENNPSMLSFYGDAIVTEEGSDDNTIPRYIFEFVNFNDLIKRCGKEVLAD 131
Query: 252 VIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVG 311
VIG +I V+P NG + L+L D SG +++TLW D+ QKL + +
Sbjct: 132 VIGFIIDVDPIEEKTTVNG-KVDMLSLHLGDGSGNVLKVTLWDDYAPMFNQKLIDQMHAT 190
Query: 312 FFPVLSV-KSGKVNDFSGKS---IGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSI 367
P +++ S V + G + + ST ++IN D E +L S G+N S+
Sbjct: 191 PKPNVAIFTSTLVKQYQGNCELYVSSSRSTTIYINIDTPEVADL--ILSSKGEN----SV 244
Query: 368 SREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWV--TVRAFITFIKSDSFCYTACPLMIG 425
+ N KT+S++ + + + D V V + + Y +CP
Sbjct: 245 LKTTETLSLTNVDVKTISELLSMAVSGVYQGDVVYNCVATVDDILLKNGLYYVSCP---- 300
Query: 426 DRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEI 481
C K V+ + + C+ C +++D RY L+ Q+ D T T F E E++
Sbjct: 301 --HCRKTVSSTETDFNCEHCTKKVDYPKIRYRLELQVNDSTESTIFVLFAEVAEQL 354
>gi|281210368|gb|EFA84534.1| putative ssDNA-binding protein [Polysphondylium pallidum PN500]
Length = 636
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 102/419 (24%), Positives = 181/419 (43%), Gaps = 55/419 (13%)
Query: 129 AIKARVTAKGDLRRYNNARGDGKVFSFDLLDS--DGGEIRVTCF-----NAVVDRFYEII 181
I+A V AK +++++N+ G + + +L+D + EI+VT F N + + E I
Sbjct: 183 TIRATVRAKSTIKQWHNSNSGGSILNLELIDDSDEKNEIKVTIFGRNNENNLCVQIDEAI 242
Query: 182 EVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEI 241
VG Y S + P NFN L + E+ + + + ++ ++F I+++
Sbjct: 243 HVGSTYDFSNFKINPKNPNFNKLSHPCELTFTENTKYYVSSAPINA--HTLYNFVKIADL 300
Query: 242 ----ESAENNSIVDVIGIVISVNPSVPILRKNGMETQR----------RILNLKDTSGRS 287
+ N+ +D+ G V +V+ + I RK T RIL DTS +S
Sbjct: 301 TPPAANETNSPPIDLFGYVSNVSGTTSINRKATSNTDNANSTLLKCTFRIL---DTSAKS 357
Query: 288 VELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDF-- 345
+++T +G ++ + + + ++ G ++++KS K++ FS S S+ +NP
Sbjct: 358 IDVTAFG----QQAETISKQLNKG--NIIAIKSAKISSFSKCSASITYSSTYEVNPPQLQ 411
Query: 346 AEAHELREWFDSGGKNAATVSISREIAAGGA--KNEIHKTVSQIKNEGLGRSE--KPDWV 401
E L W +S G +A +S S +A G + K+ I TV + LG ++V
Sbjct: 412 QECQNLLMWVNSHGDDAECLSESY-VAGGNSDDKDSIRCTVEVLPQLNLGNDPILTKNYV 470
Query: 402 TVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQ 461
V T G C KK CN + Y Y +
Sbjct: 471 VVGTLSTLSNVSLTSNDQKSQYTGCSACKKK-----------NCNCGQPQIKY-YRATFR 518
Query: 462 IQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKI 520
+QD+TG V AF + E++LG A+ + +L D+ R + + YL RL++
Sbjct: 519 LQDETGSVLVDAFSGTVEKMLGANAERFFD---QLTDEDRL-QRVNEICSVPYLVRLRV 573
>gi|145475015|ref|XP_001423530.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124390591|emb|CAK56132.1| unnamed protein product [Paramecium tetraurelia]
Length = 635
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 94/439 (21%), Positives = 192/439 (43%), Gaps = 53/439 (12%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGD--GKVFSFDLLDSDGGEIRVTCFNA 172
+ I+ + P +W ++ R+ K + + + D + F +LD + I +
Sbjct: 216 LTKISVMYPNMKKWVLEGRIILKSEQLDFRCKKTDMISRYFKIIILDCEQEIIVGLFYEK 275
Query: 173 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLK----NEWEIFLEATSTVDLCTEEDDSI 228
+ +F+ +++ G+VY G + Q N K NE+ I E+ ++ +I
Sbjct: 276 ALSKFFSVLQQGKVYTFKNGCI--GQDKANGTKKITFNEYSIISES---------QNFAI 324
Query: 229 PKQ-QFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRS 287
P Q +F + EIE+ ++NSIVDV+ ++ + K ++ + + T+ S
Sbjct: 325 PSAPQLNFSTLQEIETLQHNSIVDVVAVIQEI--------KQDSDSCKSFIVFDQTTRLS 376
Query: 288 VELTLWG-DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFA 346
V+ LWG + N QK + MV G K + + KS+ + T + N D
Sbjct: 377 VK--LWGAQYANINLQKGEIMVFKGL---------KFYNTNFKSLNSDHQTMIIQNHDLN 425
Query: 347 EAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAF 406
E +L+ W GKN T+ + ++ + V ++ NE G++++ + + +
Sbjct: 426 EVKQLKSWL--AGKNIDTIMKPNPDNSTIDLQQLDEFVIKLLNE--GKTQQTSYKYIFGY 481
Query: 407 ITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNR--WQCDRCNQEIDECDYRYLLQAQIQD 464
I ++ + Y CP + +C K+ + +R ++C +C E + ++L+ I D
Sbjct: 482 IIELQENRNMYPCCPSL----RCKSKMEEIPSRKTYRCKKCLTENPSPKFSFVLRVTIMD 537
Query: 465 QTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEEL 524
+ F + ++LG A +L + +E Q + I S+ F Q +++I+ +
Sbjct: 538 EFTNIKAVIFDDIAVKLLGITADQLRAMSHEDQRN-----IFLSKEFQQKKMKVQIQFQD 592
Query: 525 YGDEQRVKITVIRADQVNY 543
Y + + K V ++Y
Sbjct: 593 YNGQIQPKYNVQDIVDIDY 611
>gi|357473253|ref|XP_003606911.1| Replication factor A 51 kDa subunit [Medicago truncatula]
gi|357477581|ref|XP_003609076.1| Replication factor A 51 kDa subunit [Medicago truncatula]
gi|357477673|ref|XP_003609122.1| Replication factor A 51 kDa subunit [Medicago truncatula]
gi|355507966|gb|AES89108.1| Replication factor A 51 kDa subunit [Medicago truncatula]
gi|355510131|gb|AES91273.1| Replication factor A 51 kDa subunit [Medicago truncatula]
gi|355510177|gb|AES91319.1| Replication factor A 51 kDa subunit [Medicago truncatula]
Length = 502
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 90/388 (23%), Positives = 166/388 (42%), Gaps = 40/388 (10%)
Query: 107 LKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIR 166
L N AP I + R +T K ++ + D KVF ++ +
Sbjct: 26 LSNAAPDTKIKVRV-----ARMWDTLNITKKKEIISTDMVLIDEKVFINEIAN------- 73
Query: 167 VTCFNAVVDRFY-----EIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIF-LEATSTVDL 220
C +A + R + ++++ G++Y+IS + ++ + ++N + + V
Sbjct: 74 --CIHATIPRRFSPSLKKVLQEGKIYVISHFEVSKNKEKYAVVENNPSMLSFYGDAIVTE 131
Query: 221 CTEEDDSIPKQQFSFRHISE-IESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILN 279
+D++IP+ F F + ++ I+ + DVIG +I V+P NG + L+
Sbjct: 132 EGSDDNTIPRYIFEFVNFNDLIKRCGKEVLADVIGFIIDVDPIEEKTTVNG-KVDMLSLH 190
Query: 280 LKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSV-KSGKVNDFSGKS---IGTIP 335
L D SG +++TLW D+ QKL + + P +++ S V + G + +
Sbjct: 191 LGDGSGNVLKVTLWDDYAPMFNQKLIDQMHATPKPNVAIFTSTLVKQYQGNCELYVSSSR 250
Query: 336 STQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRS 395
ST ++IN D E +L S GKN S+ + N KT+S++ + +
Sbjct: 251 STTIYINIDTPEVADL--ILSSKGKN----SVLKTTETLSLTNVDVKTISELLSMAVSGV 304
Query: 396 EKPDWV--TVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECD 453
+ D V V + + Y +CP C K V+ + + C+ C +++D
Sbjct: 305 YQGDVVYNCVATVDDILLKNGLYYVSCP------HCRKTVSSTETDFNCEHCTKKVDYPK 358
Query: 454 YRYLLQAQIQDQTGLTWVTAFQESGEEI 481
RY L+ Q+ D T T F E E++
Sbjct: 359 IRYRLELQVNDSTESTIFVLFAEVAEQL 386
>gi|294943193|ref|XP_002783789.1| replication factor a 1, rfa1, putative [Perkinsus marinus ATCC
50983]
gi|239896511|gb|EER15585.1| replication factor a 1, rfa1, putative [Perkinsus marinus ATCC
50983]
Length = 117
Score = 85.5 bits (210), Expect = 7e-14, Method: Composition-based stats.
Identities = 41/85 (48%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
Query: 117 PIAALNPYQGR-WAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVD 175
PI ++ Y R W IKARVTAK +R + NARG G VFS DLLD +G EIR + FNA +
Sbjct: 6 PIREISSYSMRNWTIKARVTAKSPVRHFTNARGGGSVFSVDLLDKEGSEIRGSFFNAAAE 65
Query: 176 RFYEIIEVGRVYLISKGSLKPAQKN 200
+F ++++ G+VY SKG++K +++
Sbjct: 66 KFDKLLQKGKVYTFSKGNVKIGKED 90
>gi|328726379|ref|XP_003248874.1| PREDICTED: replication factor A protein 1-like [Acyrthosiphon
pisum]
Length = 323
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 117/243 (48%), Gaps = 39/243 (16%)
Query: 128 WAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVY 187
W+I RV K + Y N RG GK F+ L+D EIR F DR + ++ VY
Sbjct: 17 WSITVRVLKKSNKISYQNERGTGKYFTTILIDK-TTEIRAKAFGDDCDRLFLQLQENNVY 75
Query: 188 LISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHI---SEIESA 244
I G ++ A K +N+ KN++EIF + T +I +QF F I ++++
Sbjct: 76 NIKNGKIQLADKEYNNSKNDYEIFFKET-----------TIIIEQFGFTDIPTHPQLKTI 124
Query: 245 EN------NSIVDVIGIVISVNPSVPILRKNGMETQR-RILNLKDTSGRSVELTLWG--- 294
EN N+++D IG++I + S I +KN +T + R + LKD +G SV + LW
Sbjct: 125 ENFWSMDINTLIDTIGVIIKIEKSKEIKKKNSNDTYKLRDIILKDKTGFSVTVVLWDTEA 184
Query: 295 -DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSG-KSIGTIPSTQLFINPDFAEAHELR 352
+F EG ++S+ G++ F I S+++ INP + +L+
Sbjct: 185 INFNANEG------------DIMSIIDGQIIVFKNVNKISVTGSSEILINPRWKVTEDLQ 232
Query: 353 EWF 355
W+
Sbjct: 233 SWY 235
>gi|238616412|ref|XP_002399041.1| hypothetical protein MPER_00208 [Moniliophthora perniciosa FA553]
gi|215477155|gb|EEB99971.1| hypothetical protein MPER_00208 [Moniliophthora perniciosa FA553]
Length = 94
Score = 85.1 bits (209), Expect = 9e-14, Method: Composition-based stats.
Identities = 41/92 (44%), Positives = 64/92 (69%), Gaps = 1/92 (1%)
Query: 128 WAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVY 187
W IKARVT K D++ ++N RG+GK+F+ L+D + GEIR T FNAV D Y ++ G+VY
Sbjct: 3 WTIKARVTQKSDMKTWSNQRGEGKLFNVTLMD-ESGEIRGTAFNAVADDLYGRLDEGKVY 61
Query: 188 LISKGSLKPAQKNFNHLKNEWEIFLEATSTVD 219
ISK + A+K F+++ N++E+ LE + ++
Sbjct: 62 YISKAKVNLAKKKFSNVSNDYELSLERNTEIE 93
>gi|297736413|emb|CBI25136.3| unnamed protein product [Vitis vinifera]
Length = 168
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 84/149 (56%), Gaps = 16/149 (10%)
Query: 313 FPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWF-DSGGKNAATVSISREI 371
FP++++KS KV DF G S+ T+ + +NPD E+ +LR W+ D GK A+ I +I
Sbjct: 26 FPIIAIKSLKVGDFQGVSLSTLSKSIALVNPDTPESKKLRSWYHDYHGKVASMACIGSDI 85
Query: 372 ---AAGGAKNEIHKTVSQ---IKNEGLGRSEKPDWVTVRAFITFIKSD-SFCYTACPLMI 424
+ GG ++ + VS N LG +KP + ++RA+I+FIK + + Y AC
Sbjct: 86 SPSSKGGVRSMYYDRVSLSHVTSNPSLGE-DKPSFFSIRAYISFIKPEQTMWYQAC---- 140
Query: 425 GDRQCNKKVTQS-GNRWQCDRCNQEIDEC 452
+ CNKKVT + + + C+ C + DEC
Sbjct: 141 --KTCNKKVTDAIESGYWCEGCEKNDDEC 167
>gi|402222340|gb|EJU02407.1| nucleic acid-binding protein [Dacryopinax sp. DJM-731 SS1]
Length = 363
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 90/349 (25%), Positives = 150/349 (42%), Gaps = 48/349 (13%)
Query: 163 GEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCT 222
GEI ++ VD E +E+G++Y I L + F + ++ + + D
Sbjct: 8 GEIDAVAWDKAVD-LSERLEIGKLYQIPNAKLVDSSDCFTRTNHWLQVQIHSN---DKIY 63
Query: 223 EEDDS--IPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRK----NGME---- 272
E DS I + FR I+ +E ++ VD++ I++ + + ++K G E
Sbjct: 64 ELQDSGRILCIFYDFRRINSLEWFNDSRHVDLVAIIVRLGQPIKGMKKFKDQEGNERELI 123
Query: 273 TQRRILNLKDTSGRSVELTLWGD----FCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSG 328
T + L D SG V L + D F +EG+ V+++K+ ++ +
Sbjct: 124 TDHVDVYLGDNSGEFVLLAAFDDYGPQFIGREGE------------VITIKNALIDKYGN 171
Query: 329 K-SIGTIPSTQLFINPDFAEAHE-LREWFDSGGKNAATVSISREIAAGGA-------KNE 379
S+ T T + AH+ L+EWF+S G A T+ + + + N
Sbjct: 172 SVSLKTKEFTTELLFESGNHAHKVLKEWFESPGSIADTLCLMTGTYSADSVPDSWFTANI 231
Query: 380 IHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKK--VTQSG 437
KT+ +I +G+G V VR ++F + Y ACP + CNKK V +SG
Sbjct: 232 PTKTIKEIFTDGIGAHGVRSQVKVRGTVSFYSDREYTYLACP----NPNCNKKAQVAESG 287
Query: 438 NR--WQCDRCNQEIDECDYRYLLQAQIQDQTGL-TWVTAFQESGEEILG 483
N W C C +Y L Q++D GL W+TAF + E + G
Sbjct: 288 NSTVWWCTHCKTVYLVPSEKYRLNMQMRDTMGLNNWITAFNGAMERLFG 336
>gi|302823886|ref|XP_002993591.1| hypothetical protein SELMODRAFT_431648 [Selaginella moellendorffii]
gi|300138603|gb|EFJ05366.1| hypothetical protein SELMODRAFT_431648 [Selaginella moellendorffii]
Length = 160
Score = 84.3 bits (207), Expect = 1e-13, Method: Composition-based stats.
Identities = 43/114 (37%), Positives = 64/114 (56%)
Query: 383 TVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQC 442
T+S+I N L E V A + +K+D F Y AC ++ RQC KK T++ + W C
Sbjct: 37 TLSEISNMQLKVLESSPIYRVIATVKEMKTDEFYYNACINVVNARQCGKKTTRTADGWFC 96
Query: 443 DRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYEL 496
+ CN E +++Y L+ I+D + W AFQE+ +EI+G AKEL + EL
Sbjct: 97 NYCNFESANMEFKYALKMCIEDSSSHVWAIAFQEATQEIVGMSAKELATIYMEL 150
>gi|301632434|ref|XP_002945290.1| PREDICTED: hypothetical protein LOC100497369, partial [Xenopus
(Silurana) tropicalis]
Length = 1160
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 80/142 (56%), Gaps = 10/142 (7%)
Query: 216 STVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPI-LRKNGMETQ 274
++V C + D +P QF F I E+ES ++++D+IGI + + +R N E
Sbjct: 7 TSVIPCDDSAD-VPMVQFEFVPIGELESKNKDTVLDIIGICKNAEEVTKVTIRSNNREVS 65
Query: 275 RRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTI 334
+R +NL D+SG+ V TLWG+ +K Q PV+++K +++DF G+S+ +
Sbjct: 66 KRNINLMDSSGKVVSTTLWGEDADKFDGSRQ--------PVVAIKGARLSDFGGRSLSVL 117
Query: 335 PSTQLFINPDFAEAHELREWFD 356
S+ + INPD EA +LR W D
Sbjct: 118 SSSTVMINPDIPEAFKLRAWLD 139
>gi|391335288|ref|XP_003742027.1| PREDICTED: replication factor A protein 1-like [Metaseiulus
occidentalis]
Length = 384
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 84/322 (26%), Positives = 142/322 (44%), Gaps = 32/322 (9%)
Query: 121 LNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEI 180
+ P Q ++ RV +K ++ ++ +GKVFS + D+ +I++ FN +F EI
Sbjct: 57 MGPSQKKYQF--RVVSKKEIHTWSKGSSNGKVFSCQVADA-STDIQIVAFNDNCLQFSEI 113
Query: 181 IEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISE 240
++ + Y I + + A FN ++ EI L + + I ++ ++ SE
Sbjct: 114 LQEHQEYDIEGFACRQANPIFNTTSSKLEIVLNKGTKIRALNRATLRIAEKSPNYVSFSE 173
Query: 241 IESAENNSIVDVIGIVISVNPSVPILRK-NGMETQRRILNLKDTSGRSVELTLWGDFCNK 299
++S + N IVDV G++I V+P RK +G +R L + D + + + LW + N
Sbjct: 174 LQSMKENDIVDVCGVIIHVSPVEEFTRKRDGKPIVKRELRIVDEDRKILTINLWNERTNT 233
Query: 300 EGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAH--ELREWFDS 357
E L E V V SV+ G++N F G S I+ D +L +W++
Sbjct: 234 E---LVEKVAV------SVRHGRINIFRGNLSSNCESASK-IDSDLGNERLLKLSQWWEK 283
Query: 358 GGKNAATVSISREIAAGGAKNEIHKTVS------QIKNEGLGRSEKPDWVTVRAFITFIK 411
G A+ + S +E+ KTV+ ++K E P RA I +
Sbjct: 284 HGLEASGDNSSNR------NSELMKTVNFEAAQREVKIEAGSVKSPPFVFWTRARIATVA 337
Query: 412 SDSFCYTACPLMIGDRQCNKKV 433
+S Y AC C KKV
Sbjct: 338 QNSLMYRAC----AKTNCLKKV 355
>gi|115470979|ref|NP_001059088.1| Os07g0190600 [Oryza sativa Japonica Group]
gi|34394551|dbj|BAC83855.1| DNA binding protein-like [Oryza sativa Japonica Group]
gi|113610624|dbj|BAF21002.1| Os07g0190600 [Oryza sativa Japonica Group]
Length = 544
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 102/421 (24%), Positives = 184/421 (43%), Gaps = 30/421 (7%)
Query: 118 IAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRF 177
++ +N + W IK RV L + R D L+D +G I + +F
Sbjct: 6 LSQINSTRHNWRIKVRVARSWHLSGTSKRR-DFTALELILVDEEGVGITACVGENEIQKF 64
Query: 178 YEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVD-LCTEEDDSIPKQQFSFR 236
I G Y + + K N + + + IF + V+ + TE S+P F+F
Sbjct: 65 STSIVEGHAYFLRNFRVSRQTKKLNAVPSTYAIFFTPWTIVEEIPTEISGSLPLYIFNFV 124
Query: 237 HISEIE--SAENNSIVDVIGIVISVNPSVPILRKNGME--TQRRILNLKDTSGRSVELTL 292
+++ + N +VDVIG + V+P +++ NG+ + RR + L+D S R +E+TL
Sbjct: 125 DFEDLDERARHPNGLVDVIGQLTVVHP---LVQSNGLNGPSVRRNVELRDLSDRLLEITL 181
Query: 293 WGDFCNK-EGQKLQEMVDVGFFPVLSVKSG-KVNDFSGK-SIGTIPSTQLFINPDFAEAH 349
W + E + L E + PV+ V +G + FSG S + +T+ +IN D E +
Sbjct: 182 WAEHATSFEDEFLIETIGKD-EPVIIVFAGLNMKLFSGAPSCRSSAATKWYINIDIPEIN 240
Query: 350 ELREWFDSGGKNAATVSISREIAAGGAKNEI---HKTVSQIKNEGLGRSEKPDW-VTVRA 405
R G+ + + + AA GA NE K++S++ + L + D T A
Sbjct: 241 AFRTSLQ--GRGCEVLLVPSDGAALGAANEADANRKSISELLS--LNPHDNNDVRFTCDA 296
Query: 406 FITFIK-SDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQD 464
I I S + Y AC + C K V + ++C C+ Y L I+D
Sbjct: 297 RIKEIDVSSGWWYKACSI------CRKGVKPTLQGFECVNCDNTEPIITPSYKLNVVIED 350
Query: 465 QTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEEL 524
T + F E+++ A +L ++ + + +R+ + +++F++ I E+
Sbjct: 351 NTDRAKIFMFGGMAEQVVRRTAADL--VEESSANQLLLPSPLRALIGRRFVFQIVISEQT 408
Query: 525 Y 525
+
Sbjct: 409 F 409
>gi|403363046|gb|EJY81258.1| hypothetical protein OXYTRI_21347 [Oxytricha trifallax]
Length = 384
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 100/229 (43%), Gaps = 13/229 (5%)
Query: 44 APNSGTFNLQNSGTFNSQNPGSFSTPNSGTFRAPNAGSIVRSFQPTVQPPYQPPPNFRNH 103
+P NLQ + SQ F+ N R N G Q Q + F+N
Sbjct: 75 SPQKSVSNLQLESQYQSQ----FTQIN----RPLNFGQSQNQTQQYSQYQNRAQNYFQNR 126
Query: 104 GPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGG 163
++ +PI ALN + W I+A++ K +LR R V +++D G
Sbjct: 127 QERNSTIIDSKYMPIKALNTFSRDWQIQAKLARKSELRE--TQRQKTVVLKIEIIDVFGT 184
Query: 164 EIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTE 223
I T F F + +EV +VYL S G +KP K F+ L N++ I E T+ + C
Sbjct: 185 TIECTFFADAAKDFNQRLEVNKVYLFSNGQVKPNDKRFSTLPNDFCIVFEQTANIIECN- 243
Query: 224 EDDSIPKQQFSFRH--ISEIESAENNSIVDVIGIVISVNPSVPILRKNG 270
ED I Q+ F + I IE + N +DV G++I + + KNG
Sbjct: 244 EDIQIEDQKGEFDNTLIGSIEECDVNKPIDVSGVIIEMADQEIVKLKNG 292
>gi|147818369|emb|CAN60163.1| hypothetical protein VITISV_008661 [Vitis vinifera]
Length = 774
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 101/201 (50%), Gaps = 24/201 (11%)
Query: 360 KNAATVSISREIAAGGAKNEIHKTVSQ---IKNEGLGRSEKPDWVTVRAFITFIKSD-SF 415
K T++ + GG ++ + VS N LG +KP + ++RA+I+FIK + +
Sbjct: 589 KRDITIADKTPSSKGGVRSMYYDRVSLSHVTSNPSLGE-DKPSFFSIRAYISFIKPEQTM 647
Query: 416 CYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQ 475
Y AC + CNKKVT + E Y Y++ ++ D +G + F
Sbjct: 648 WYQAC------KTCNKKVTDA-------------IESGYWYIMVVKVSDDSGEACLALFN 688
Query: 476 ESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITV 535
E E I GC A EL LK + ++ RF + ++ ++ +LFR+ + + Y +E+R IT
Sbjct: 689 EQAERIFGCSADELDKLKSQEGEENRFQQKLKEAIWVPHLFRISVAQHEYMNEKRQWITA 748
Query: 536 IRADQVNYSSESRYLLDLISK 556
V++++ SR LL+ ISK
Sbjct: 749 XAVVAVDFAAXSRLLLEEISK 769
>gi|70914008|ref|XP_731701.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56501834|emb|CAH83538.1| hypothetical protein PC300559.00.0 [Plasmodium chabaudi chabaudi]
Length = 90
Score = 80.9 bits (198), Expect = 2e-12, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 62/91 (68%), Gaps = 1/91 (1%)
Query: 140 LRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQK 199
+R++ +GKVF+ +L D + GEI+V F VD++Y+ +EVG++Y ISKG++K A K
Sbjct: 1 IRKFYTGNKEGKVFNIELCD-ESGEIKVNFFGKAVDKWYDYLEVGKIYKISKGNIKSANK 59
Query: 200 NFNHLKNEWEIFLEATSTVDLCTEEDDSIPK 230
FN LK++ EI L+ S ++L E D +IPK
Sbjct: 60 KFNTLKHDCEITLDENSILELLEENDMNIPK 90
>gi|10177987|dbj|BAB11360.1| replication protein A1-like protein [Arabidopsis thaliana]
Length = 543
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 85/444 (19%), Positives = 185/444 (41%), Gaps = 55/444 (12%)
Query: 112 PARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL--DSDGGEIRVTC 169
P + ++ + P++ W ++ ++ L + + D + D++ D +G ++ +T
Sbjct: 4 PLGLTYLSDVKPFKTNWCVRVKI-----LHLWRQTK-DASRETLDVIICDENGSKMHITI 57
Query: 170 FNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIP 229
+ +F+ I+VG +I +L P + + + + V C DS+
Sbjct: 58 RKHYIGKFHRSIKVGDWKIIDNFTLSPLTGKYKISSLTYRMAFNHNTDVIKCDPVSDSVF 117
Query: 230 KQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVE 289
F + + ES + N ++D++G V+ V I+ +N ++ ++D S +
Sbjct: 118 LDLADFEGV-KTESYDENVLIDILGQVVRVGKVDEIMAQNK-PNKKLEFQIRDASNERLP 175
Query: 290 LTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAH 349
TLWG F K L+ + VL ++ K+N+F G + +++ INP
Sbjct: 176 CTLWGVFAEKVFSALKSIKHDEKTVVL-IRYAKINNFKGNHAFDV--SEVIINP--VHVP 230
Query: 350 ELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITF 409
E+ + S + ++I N +++ + ++ W + +
Sbjct: 231 EVELFVKSLPSDGLALTIQ--------DNYVNRDLIKVGQ----------WRILGSIFAI 272
Query: 410 IKSDSFCYTACPLMIGDRQCNKKV------TQSGN--------RWQCDRCNQEIDECDYR 455
+ Y CP +CN+K T +G ++ CD+C + I + R
Sbjct: 273 DTDWGWFYFGCP------KCNRKTELVKESTSTGKMVKTPMKPKFWCDKCQESITNVEAR 326
Query: 456 YLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKY-ELQDDVRFGEIIRSRVFNQY 514
Y L ++ DQT + F+ + +++G ++EL +Y E++D ++I + +
Sbjct: 327 YKLHVRVMDQTAEIKLMVFENNATKLIGKSSEELVDGQYEEIKDPTIISDVITNLCGKTF 386
Query: 515 LFRLKI-KEELYGDEQRVKITVIR 537
F + + K +YG + K+T +
Sbjct: 387 HFLVSVEKANIYGGKDIYKVTKVH 410
>gi|296084703|emb|CBI25845.3| unnamed protein product [Vitis vinifera]
Length = 131
Score = 80.1 bits (196), Expect = 3e-12, Method: Composition-based stats.
Identities = 46/127 (36%), Positives = 70/127 (55%), Gaps = 12/127 (9%)
Query: 372 AAGGAKNEIHKTVSQ---IKNEGLGRSEKPDWVTVRAFITFIKSD-SFCYTACPLMIGDR 427
+ GG ++ + VS N LG +KP + ++RA+I+FIK D + Y AC +
Sbjct: 12 SKGGVRSMYYDRVSLSHVTSNPYLGE-DKPSFFSIRAYISFIKPDQTMWYRAC------K 64
Query: 428 QCNKKVTQS-GNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPA 486
CNKKVT + G+ + C+ C + DEC RY++ ++ D +G W++ F E E I GC A
Sbjct: 65 TCNKKVTGAIGSGYWCEGCQKNDDECSLRYIMVVKVSDASGEAWLSMFNEQAERIFGCSA 124
Query: 487 KELYMLK 493
E LK
Sbjct: 125 DEPDKLK 131
>gi|357516559|ref|XP_003628568.1| Replication factor A protein [Medicago truncatula]
gi|355522590|gb|AET03044.1| Replication factor A protein [Medicago truncatula]
Length = 559
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 88/375 (23%), Positives = 163/375 (43%), Gaps = 54/375 (14%)
Query: 123 PYQGRWAIKARVTAKGDLRRY---NNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYE 179
P + W I+ RV ++ + N A LLD G +I+ ++ F +
Sbjct: 13 PGRLNWRIRVRVVRMWEVPTFLKPNQANS----LEMVLLDQMGVKIQAIVRKQLIYVFQK 68
Query: 180 IIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHIS 239
+ G VY IS S+ P+ ++ + ++I + T+ V CT +IP SF I
Sbjct: 69 RLREGEVYNISYFSVAPSTGSYRAATHPYKIVFQMTTKVQSCTSA--TIPLYGLSFTSIV 126
Query: 240 EI--ESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFC 297
++ + E + +VDV+G+V +V+ +R +G T+ I + D SG+ +E L+G++
Sbjct: 127 DVSNHTVEYDYLVDVMGLVTAVSEEREYVR-DGSVTKMIIFEVTDHSGK-IECALFGEYV 184
Query: 298 NKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDS 357
V GF ++++ K GT T+L +NPD E ++
Sbjct: 185 ----ALWNGFVSKGFEDKATLQNVK---------GT---TRLIVNPDVPEVIAFKDRLIG 228
Query: 358 GGKNAATVSISREIAAGGAKNEIH---------KTVSQIKNEGLGRSEKPDWVTVRAFIT 408
G V + + G +K + KT+SQ+ N SE+ + V A ++
Sbjct: 229 LG---IQVPPTLTVLGGPSKPSMEEEFLRMYPKKTISQLFN-----SEEDGFFVVSAIVS 280
Query: 409 -FIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTG 467
F++ + + Y AC +C++ VT + C C++ + + RY ++ ++ D TG
Sbjct: 281 GFVEGEEWWYPAC-------KCHRSVTADSGAYYCKGCDKHVIQMVPRYKIKLRVDDGTG 333
Query: 468 LTWVTAFQESGEEIL 482
+ F +L
Sbjct: 334 DSVFVLFDSDVHYLL 348
>gi|391336033|ref|XP_003742388.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Metaseiulus occidentalis]
Length = 173
Score = 79.3 bits (194), Expect = 5e-12, Method: Composition-based stats.
Identities = 48/163 (29%), Positives = 77/163 (47%), Gaps = 7/163 (4%)
Query: 393 GRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDE 451
G ++KP ++ RA IT ++ Y ACP + C KK G+ + C++C
Sbjct: 10 GVTDKPLYLWNRATITMFNKETSMYKACP----NENCMKKAQDQGDGNYSCEKCATSGPN 65
Query: 452 CDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVF 511
+R +L+ + D T W TAF E E+ILG A L Y + +I +F
Sbjct: 66 FKWRLVLKMAVADATKQLWCTAFNEKAEQILGVTAATLG--DYSENNPDEMDKIFADAMF 123
Query: 512 NQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLI 554
Q+ F+ + + E+Y DE+R VI +V + R+L + I
Sbjct: 124 KQFHFKFRGRMEVYQDERRFNTAVIDVKEVKLVDDCRHLANDI 166
>gi|241617732|ref|XP_002408205.1| replication factor A 1, rfa1, putative [Ixodes scapularis]
gi|215502936|gb|EEC12430.1| replication factor A 1, rfa1, putative [Ixodes scapularis]
Length = 347
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 78/144 (54%), Gaps = 5/144 (3%)
Query: 327 SGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQ 386
SG S+ I S+QL +NPD E+H L W+ + G + T S+S K +S+
Sbjct: 183 SGVSLSMIGSSQLQVNPDIPESHALIGWYSNEGASLQTQSLSVRTGGFEGAAASWKHLSE 242
Query: 387 IKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRC 445
K++ LG +KPD+ + +A + ++ ++ Y ACP +CNKK+ N ++C++C
Sbjct: 243 AKSQKLGFGDKPDYFSCKASVAIVRKENCLYKACP----AEKCNKKLVNLENGLYRCEKC 298
Query: 446 NQEIDECDYRYLLQAQIQDQTGLT 469
N++ E +R ++ + + +T +
Sbjct: 299 NEQTSEFKWRLIVSDESRLKTSVV 322
>gi|349805559|gb|AEQ18252.1| putative replication protein A DNA-binding subunit [Hymenochirus
curtipes]
Length = 298
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 66/122 (54%), Gaps = 2/122 (1%)
Query: 435 QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKY 494
Q ++C++C++E YR + A I D W+T FQES E ILG A L LK
Sbjct: 178 QQNGLFRCEKCDKEFPNFKYRLIPSANIADFGENQWITCFQESAESILGQNAAYLGELKE 237
Query: 495 ELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLI 554
+++ F E+ ++ F Y+FR+++K E Y DE R+K T + V+Y SR L+ I
Sbjct: 238 --KNEQSFDEVFQNANFRSYIFRVRVKLETYNDESRIKATAMEVKPVDYKEYSRKLIMNI 295
Query: 555 SK 556
K
Sbjct: 296 RK 297
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 64/114 (56%), Gaps = 8/114 (7%)
Query: 249 IVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMV 308
IV + ++ S + + ++ N E +R ++L D+SG V TLWG+ ++ Q
Sbjct: 76 IVMEMEVLKSADLTKVTIKSNNREVSKRNIHLMDSSGTVVSTTLWGEDADRFDGSRQ--- 132
Query: 309 DVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNA 362
PV++VK +++DF G+S+ + S+ + INPD EA +LR WFDS +N
Sbjct: 133 -----PVVAVKGARLSDFGGRSLSVLSSSTVMINPDIPEAFKLRAWFDSEQQNG 181
>gi|391326949|ref|XP_003737971.1| PREDICTED: replication factor A protein 1-like [Metaseiulus
occidentalis]
Length = 290
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 116/250 (46%), Gaps = 16/250 (6%)
Query: 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
R + L Y G ++ RVT+K ++ ++ +GK+FSF L+ + I V
Sbjct: 38 TRFLKDVVLTRYGG--VLEGRVTSKTPIKEWSKNGKEGKLFSF-LMADETARISVIVSGD 94
Query: 173 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQ 232
D + I+V Y I+ KP +F+ +E E+ L S + E D IP+ Q
Sbjct: 95 KTDEVFSTIQVNHCYRITGFKPKPVNPHFSSTDHECEVTLSKISKIKEI--ERDDIPQTQ 152
Query: 233 FSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTL 292
I+ I + E N ++D+ I+ + P I ++G +++ L D S + V L L
Sbjct: 153 SLCSSIASILNIEKNCLIDLTAILFDLLPVQNITCRDGSIQKKQTALLVDDSKKIVSLDL 212
Query: 293 WGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSI-GTIPSTQLFINPDFAEAHE- 350
W NK +KL +M PV S+KS V +F GK + G++ +T E +
Sbjct: 213 W----NKHVEKLTDMEGC---PV-SIKSITVKEFRGKIVLGSMANTTFNDGEPTGETRKE 264
Query: 351 -LREWFDSGG 359
++W+ +GG
Sbjct: 265 YQKKWWLTGG 274
>gi|391325776|ref|XP_003737403.1| PREDICTED: replication factor A protein 1-like [Metaseiulus
occidentalis]
gi|391325887|ref|XP_003737458.1| PREDICTED: replication factor A protein 1-like [Metaseiulus
occidentalis]
gi|391326850|ref|XP_003737923.1| PREDICTED: replication factor A protein 1-like [Metaseiulus
occidentalis]
gi|391332922|ref|XP_003740876.1| PREDICTED: replication factor A protein 1-like [Metaseiulus
occidentalis]
gi|391333156|ref|XP_003740987.1| PREDICTED: replication factor A protein 1-like [Metaseiulus
occidentalis]
gi|391341618|ref|XP_003745124.1| PREDICTED: replication factor A protein 1-like [Metaseiulus
occidentalis]
Length = 280
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 118/255 (46%), Gaps = 12/255 (4%)
Query: 106 ILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEI 165
++ +E + + +G ++ RV +K ++ ++ G GK+F+F + D+ G EI
Sbjct: 22 VVTHEQSGGAKTVQHITEGKGCGQVEGRVKSKTPVKHWSKGDGSGKIFNFVMSDTSG-EI 80
Query: 166 RVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEED 225
V + +++I VG+ Y I+ +K + +E E+ L S V T D
Sbjct: 81 NVIASGDSAEEIFDMITVGQCYKINAYKVKAVNPQYRATDHECELQLTKLSKVIPITGND 140
Query: 226 DSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSG 285
+PK Q + E+ + N+ VD++ +V V P ++G+ ++ + + D S
Sbjct: 141 --LPKIQAQTTVLMELLTKPVNTTVDILVVVFDVRPPQTFNCRDGINRVKQTVTVLDDSM 198
Query: 286 RSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSG-KSIGTIPSTQLFINPD 344
+ V L LW +F K K E V +++ +V D++G + + T +T +
Sbjct: 199 KMVNLGLWSEFVGKLDGKEGEAV--------ILQNLQVRDYNGTRQLSTTTNTIIREAAG 250
Query: 345 FAEAHELREWFDSGG 359
A+A LR+WF G
Sbjct: 251 DADAERLRQWFKVDG 265
>gi|12322096|gb|AAG51090.1|AC027032_10 hypothetical protein [Arabidopsis thaliana]
Length = 567
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 92/391 (23%), Positives = 162/391 (41%), Gaps = 53/391 (13%)
Query: 121 LNPYQGRWAIKARVTAKGDLRRY-NNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYE 179
+ PY+ W ++ ++ ++Y +N R + + D G ++ T +V +F
Sbjct: 11 VRPYKNAWRVQVKIL--HSWKQYTSNTR---ETIELVISDEHGKKMHATVKKELVSKFVH 65
Query: 180 IIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHIS 239
+ VG I L A F + +++ + + V C DS + S
Sbjct: 66 KLIVGEWVFIEIFGLTYASGQFRPTNHLYKMAFQVRTEVMGCASVSDS---NFLTLASFS 122
Query: 240 EIESAENN--SIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFC 297
+I+S E N +VD IG +I+V + L+ N T + ++D +++TLWG +
Sbjct: 123 KIQSGELNPHMLVDAIGQIITVG-ELEELKANNKRTTKIDFEIRDQMDERMQVTLWGTYA 181
Query: 298 NKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIG-TIPSTQLFINPDFAEAHELREWFD 356
+ + QE GK N S KS+ + ++Q+ +NPDF E H+ +
Sbjct: 182 QEVYRACQE------------SEGK-NTASVKSLSNSFDASQVHVNPDFPEVHDFSQTLL 228
Query: 357 SGGKNAATVSISR----EIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKS 412
+ G A V +R E+ A + T + I+N L S + V V I + +
Sbjct: 229 NDG--AICVFRARVPRFEMVAVKRTDYSEYTRNTIEN--LLSSTEVGKVRVLCTIYAVDT 284
Query: 413 D-SFCYTACPLMIGDRQCNKKVTQ------------SGNRWQCDRCNQEIDECDYRYLLQ 459
D ++ Y +C + CNKKV R+ CD C + RY++
Sbjct: 285 DWAWYYISC------KTCNKKVNHIHAGVNGVNNKGKKPRFWCDTCTSVVTNVVSRYMIY 338
Query: 460 AQIQDQTGLTWVTAFQESGEEILGCPAKELY 490
A++ D TG + F EI+G A ++
Sbjct: 339 AKVMDSTGEAKLLLFDSICSEIIGESAASVF 369
>gi|413917541|gb|AFW57473.1| retrotransposon protein [Zea mays]
Length = 581
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 82/388 (21%), Positives = 151/388 (38%), Gaps = 37/388 (9%)
Query: 117 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL--DSDGGEIRVTCFNAVV 174
P+A L+P I+ RV K + R A DG + +L+ D G I A+
Sbjct: 48 PVAELHPQSTNVVIRVRVIRKWEFR---GATNDGPLQHINLVLADEQGTPIHAEIAAALA 104
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
IIE+ +VY + + + P++ F + N + I + + + P+ +
Sbjct: 105 VDKGSIIEIEKVYELKRFRVTPSRNYFKPVDNNFMIQFTLYTQAKVVKDPPQVFPRYIYK 164
Query: 235 FRHISEIESAENNS--IVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTL 292
IE + +N ++DV+G++ +NP P+ N T R + +K+TS S+++TL
Sbjct: 165 LTCFENIEDSIDNRTYLIDVLGMLTQINPPHPVGYNNS--TIIRDIFIKNTSDMSLKITL 222
Query: 293 WG---------DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKS-IGTIPSTQLFIN 342
WG D N+ ++ ++ VGF F G+ + + ++ + N
Sbjct: 223 WGNQASSFSISDVYNQSNKQPIVILLVGFL---------AKRFKGQPYLSSTAASSWYFN 273
Query: 343 PDFAEAHELREWFDSGG-KNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWV 401
P EA + + + EI N KTV ++ N +
Sbjct: 274 PVIPEAQTYYNRLQNNDLQLIQPTAAEEEILLSQPPNLEQKTVEELLNIDPDMFPPEGYR 333
Query: 402 TVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQ 461
+++ + Y +C +C+K +Q+ + C C + ++RY L
Sbjct: 334 CTVTISRIVQNSKWWYPSC------SRCHKSSSQTSTGYHCTSCG--CTDINFRYKLSFI 385
Query: 462 IQDQTGLTWVTAFQESGEEILGCPAKEL 489
D T F +I+G P L
Sbjct: 386 ATDGTCEAEFFCFDNIARKIVGKPCDNL 413
>gi|24960752|gb|AAN65446.1| Putative helicase [Oryza sativa Japonica Group]
gi|108706525|gb|ABF94320.1| hypothetical protein LOC_Os03g08400 [Oryza sativa Japonica Group]
Length = 764
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 85/403 (21%), Positives = 169/403 (41%), Gaps = 36/403 (8%)
Query: 103 HGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDG 162
HG + + I PIA L P + + I R++ + R N + K LLD G
Sbjct: 232 HGQLYVAISRMNITPIAELRPGRYDYMICVRISRIWEFRG-TNEDDNIKHLDLVLLDQKG 290
Query: 163 GEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCT 222
I + + ++ G + ISK ++ A+ ++ + N + I L + +
Sbjct: 291 DAIYAEIPPDAIPLLNQYLQEGNIVYISKITVNNAKPSYRAVGNPYMIKLNKRTCIIEAK 350
Query: 223 EEDDSIPKQQFSFRHISEIE--SAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNL 280
++ PK F ++ +++ + +DVIG +I+V+ + I + RRI+ L
Sbjct: 351 DQPMDFPKYTFDLVSFDKLHDFTSKTDRFLDVIGKIIAVSNAAMISTSSSDYRMRRIVKL 410
Query: 281 KDTSGRSVELTLWGDFCNK-EGQKLQEMVD----VGFFPVLSVK--SGKVNDFSGKSI-- 331
+D SG++++L+L G + +G+ + E+ + F S+K G SG +
Sbjct: 411 QDLSGKTIDLSLSGKRAVEFDGETILEVGQNNHIIAIFVGTSMKILKGTYEFLSGTTACR 470
Query: 332 -----GTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQ 386
IP ++F A +++ + ++ + R I HKT+++
Sbjct: 471 WYINENDIPEIKMFQKCLPPHADPIQKLYLQSDED-----MQRSIE--------HKTLAE 517
Query: 387 IKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCN 446
+K + + I + ++CY AC L CN K+ G+ +C + N
Sbjct: 518 LKEIDPFVDKDEKYQCTATIIGIQERKTWCYQACKL------CNCKMIWDGSILKCKKEN 571
Query: 447 QEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKEL 489
+ +Y+Y + D T + F++ G E++G A+ +
Sbjct: 572 CPCRQYEYKYKIPFIANDGTASLELVLFEKKGTELIGRTAETM 614
>gi|449692091|ref|XP_002168845.2| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like,
partial [Hydra magnipapillata]
Length = 83
Score = 76.6 bits (187), Expect = 3e-11, Method: Composition-based stats.
Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 7/86 (8%)
Query: 373 AGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKK 432
AGG K +KT+ QIK+EGLG EKPD+ VRAF+ F + ++ Y ACP CNKK
Sbjct: 1 AGGGK---YKTLGQIKDEGLGMGEKPDYFNVRAFVVFYRKENCMYQACP----GADCNKK 53
Query: 433 VTQSGNRWQCDRCNQEIDECDYRYLL 458
V + +++C++C++ + YR +L
Sbjct: 54 VIEDNGQFRCEKCDRTYPDFKYRMVL 79
>gi|328705572|ref|XP_003242847.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Acyrthosiphon pisum]
Length = 386
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 108/232 (46%), Gaps = 25/232 (10%)
Query: 128 WAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVY 187
+ +K V K + Y++ R V + +++DS G +RV+ FN + D EI E + Y
Sbjct: 167 FVLKLTVVKKYAINTYSSCR----VLNVNMMDS-TGVVRVSAFNTLSDSLNEIFEENKTY 221
Query: 188 LISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSI-PKQQF-SFRHISEIESAE 245
++ LK Q E+ L++ S + E D I PK Q+ + +++
Sbjct: 222 YLADTILKHNQFGV-------ELKLQSHSVI---IESIDKIQPKIQYIKTSNFNKLLENN 271
Query: 246 NNSIVDVIGIVISVNPSVPILRKNG-METQRRILNLKDTSGRSVELTLWGDFCNKEGQKL 304
N+ D+IG+ I + E +R + L D S ++ L +WGD NK +K
Sbjct: 272 PNTFCDLIGVCIEIGDIEACSNSTSRTEIGKREIVLIDMSMATITLKVWGDQVNKFDEKF 331
Query: 305 QEMVDVGFFPVLSVKSGKVNDFSG-KSIGTIPSTQLFINPDFAEAHELREWF 355
P++ VK + F+G K + + LFINP+ AE H+L+EW+
Sbjct: 332 DNP------PIVMVKQAVLKQFNGAKYFSMVKFSVLFINPNLAEVHQLKEWY 377
>gi|116785534|gb|ABK23763.1| unknown [Picea sitchensis]
Length = 67
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 43/64 (67%)
Query: 114 RIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAV 173
R+ P+ +LN YQG W IK RVT KG LR + NARG+G VF+ +L D DG +I+ T F
Sbjct: 4 RVYPLVSLNRYQGNWTIKVRVTNKGPLRTFRNARGEGSVFNVELTDEDGTQIQATMFKEA 63
Query: 174 VDRF 177
D+F
Sbjct: 64 ADKF 67
>gi|391329407|ref|XP_003739166.1| PREDICTED: replication factor A protein 1-like [Metaseiulus
occidentalis]
Length = 291
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 112/235 (47%), Gaps = 19/235 (8%)
Query: 130 IKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLI 189
+ RV +K +++ + +GK+FSF + DS G I+V D +E I VG Y +
Sbjct: 45 VHGRVVSKSNMKNWKKNNQEGKLFSFVIEDSSGS-IQVVTSGDRCDALHEEITVGDCYRL 103
Query: 190 SKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSI 249
+ +L + +N K+ EI + S V + ++P+ + + I+EI + E N++
Sbjct: 104 NAFTLHESNPLYNKTKHPLEIHITKLSQVKKI--QGKNLPRSKINNITIAEIMNTELNTL 161
Query: 250 VDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWG---DFCNKEGQKLQE 306
+D+IGIV V + ++G+ ++ + L D + R V L +W +F EG+
Sbjct: 162 IDIIGIVYEVGHPQNLSCRDGVMRIKQNIRLVDNTLRVVNLGVWNNAQNFAGTEGK---- 217
Query: 307 MVDVGFFPVLSVKSGKVNDFSGKSI-GTIPSTQLFINPDFAEAHELREWFDSGGK 360
+++ + V +++GK + T ST L P+ + L WF G+
Sbjct: 218 --------CVAITNLLVREYAGKKVLTTTDSTILKSEPNDPDLKTLEAWFTRDGQ 264
>gi|297596199|ref|NP_001042171.2| Os01g0175300 [Oryza sativa Japonica Group]
gi|255672925|dbj|BAF04085.2| Os01g0175300 [Oryza sativa Japonica Group]
Length = 523
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 83/391 (21%), Positives = 165/391 (42%), Gaps = 36/391 (9%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
I PIA L P + + I R++ + R N + K LLD G I +
Sbjct: 3 ITPIAELRPGRYDYMICVRISRIWEFRG-TNEDDNIKHLDLVLLDQKGDAIYAEIPPDAI 61
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
+ ++ G + ISK ++ A+ ++ + N + I L + + ++ PK F
Sbjct: 62 PLLNQYLQEGNIVYISKITVNNAKPSYRAVGNPYMIKLNKRTCIIEAKDQPMDFPKYTFD 121
Query: 235 FRHISEIE--SAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTL 292
++ +++ + +DVIG +I+V+ + I + RRI+ L+D SG++++L+L
Sbjct: 122 LVSFDKLHDFTSKTDRFLDVIGKIIAVSNAAMISTSSSDYRMRRIVKLQDLSGKTIDLSL 181
Query: 293 WGDFCNK-EGQKLQEMVD----VGFFPVLSVK--SGKVNDFSGKSI-------GTIPSTQ 338
G + +G+ + E+ + F S+K G SG + IP +
Sbjct: 182 SGKRAVEFDGETILEVGQNNHIIAIFVGTSMKILKGTYEFLSGTTACRWYINENDIPEIK 241
Query: 339 LFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKP 398
+F A +++ + ++ + R I HKT++++K +
Sbjct: 242 MFQKCLPPHADPIQKLYLQSDED-----MQRSIE--------HKTLAELKEIDPFVDKDE 288
Query: 399 DWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLL 458
+ I + ++CY AC L CN K+ G+ +C + N + +Y+Y +
Sbjct: 289 KYQCTATIIGIQERKTWCYQACKL------CNCKMIWDGSILKCKKENCPCRQYEYKYKI 342
Query: 459 QAQIQDQTGLTWVTAFQESGEEILGCPAKEL 489
D T + F++ G E++G A+ +
Sbjct: 343 PFIANDGTASLELVLFEKKGTELIGRTAETM 373
>gi|357491997|ref|XP_003616287.1| Replication factor A protein [Medicago truncatula]
gi|355517622|gb|AES99245.1| Replication factor A protein [Medicago truncatula]
Length = 517
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/338 (20%), Positives = 150/338 (44%), Gaps = 18/338 (5%)
Query: 157 LLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATS 216
L+D G +I + + F + G+VY +S S+ P+ ++ + ++I + T+
Sbjct: 46 LIDEMGTKIHASVRKQLFYVFQSKLSEGKVYEMSCFSVAPSVGSYRTTLHPYKIVFQMTT 105
Query: 217 TVDLCTEEDDSIPKQQFSFRHISEI--ESAENNSIVDVIGIVISVNPSVPILRKNGMETQ 274
V C E SIP S I+++ +++++ +VDV+G + ++ +R +G T+
Sbjct: 106 KVQAC--EGASIPSLGISLCKIADVCQHTSDHDYLVDVLGFMTGISVEREYVR-DGKVTK 162
Query: 275 RRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSI--G 332
I + D SG+ E L+G + + + + + G P++ V+ KV F K+
Sbjct: 163 MVIFEITDASGKC-ECALFGQYVDTLNKLMGK--SGGGMPIILVQFAKVKIFRDKASLQN 219
Query: 333 TIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGL 392
+ +T++ INP +A ++R+ G + ++V + + + +T + E L
Sbjct: 220 VMNTTRILINPPIEQADQIRKSVTFGSMDVSSVPRIGARSKVSLEEDFLRTFPKKTLEQL 279
Query: 393 GRSEKPDWVTVRAFI-TFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDE 451
+ + V A I + + + Y AC +C++ V+ + C C + + +
Sbjct: 280 HSTFEDGVFVVYATIGGLVDHEDWWYPAC-------KCHRSVSADSGAFYCKGCAKHVFQ 332
Query: 452 CDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKEL 489
R+ ++ + D T + F + +L P L
Sbjct: 333 MVPRFRVKVNVSDATNVGVFVVFDGDMQNLLNTPCSSL 370
>gi|9294533|dbj|BAB02796.1| replication protein A1-like [Arabidopsis thaliana]
Length = 581
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 87/392 (22%), Positives = 160/392 (40%), Gaps = 56/392 (14%)
Query: 121 LNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEI 180
+ PY+ W ++ + R+Y G+ F D G +I + +V ++ +
Sbjct: 11 VRPYKTSWRVQVKTLHA--WRQYTANTGETLEVVFS--DETGKKIHCSVRKDLVSKYANM 66
Query: 181 IEVGRVYLISKGSLKPAQKNFNHLKNEWEI-FLEATSTVDLCTEEDDSIPKQQFSFRHIS 239
+ VG I SL A +F + +++ F+ TS + + D + +
Sbjct: 67 LTVGEWVFIETFSLNYAGGSFRPTSHLYKMSFVNGTSVIPSPSVSDSN----YLTLATFE 122
Query: 240 EIESAENN--SIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFC 297
+I+S E N +VDVIG ++ + + L N T + +++D S + +TLWG F
Sbjct: 123 KIQSGELNPTMLVDVIGQIVMIG-ELEELEANNKPTTKIDFDIRDASDERIGVTLWGTFA 181
Query: 298 NKEGQKLQEMVDVGFFPVLSV-KSGKVNDFSG--KSIGTIPSTQLFINPDFAEAHELREW 354
+ + E G PV+ V + K+ + G + ++Q+F+NP F E
Sbjct: 182 QQVYRGCNE---AGARPVVCVLRFVKIKSYKGVRNLSNSFDASQVFVNPQFPEVDAFLRT 238
Query: 355 FDSGG----------KNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVR 404
G K VS + +N I + ++ + +G++ +
Sbjct: 239 LPQDGILLTYRERIPKLEIVVSKKSDSCLEYPRNTIQQLLNAVD---VGKAR------LM 289
Query: 405 AFITFIKSD-SFCYTACPLMIGDRQCNKKVTQSGN------------RWQCDRCNQEIDE 451
I I +D ++ Y +C R CNKKVT + R+ CD C +
Sbjct: 290 CTIYAIDTDWAWYYISC------RACNKKVTHIHSGVHGVNNKGKKPRFWCDSCKTVVTN 343
Query: 452 CDYRYLLQAQIQDQTGLTWVTAFQESGEEILG 483
RY++ A++ D TG + + F + EI+G
Sbjct: 344 VIARYMIYAKVMDNTGESKLLLFDQICTEIIG 375
>gi|414585088|tpg|DAA35659.1| TPA: hypothetical protein ZEAMMB73_284494 [Zea mays]
Length = 524
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 84/353 (23%), Positives = 151/353 (42%), Gaps = 52/353 (14%)
Query: 157 LLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATS 216
L+D +GG + + F +I+ G VY +S +K A + + + N+ I +
Sbjct: 44 LIDEEGGSAHAQIYPPLAAVFKPMIKEGNVYNVSYVQIKKANRMYKPVDNDIMIGFTKWT 103
Query: 217 TVDLCTEEDDSIPKQQFSFRHISEIESAEN--NSIVDVIGIVISVNPSVPILRKNGMETQ 274
T++ E + P+ +S ++ + + +DVIG V ++ V +R +TQ
Sbjct: 104 TIEELIEVPPAFPEIGYSLTPFDQLTTLVDIREYFIDVIGAVTMIS-DVATIRTKMRQTQ 162
Query: 275 --RRILNLKDTSGRSVELTLWG--------DFCNKEGQ-KLQEMVDVGFFPVLSVKSGKV 323
+R + +++ S +E+ +WG D + GQ LQ ++ VG L+
Sbjct: 163 TAKRSVTIQNESCTPLEVVMWGGQATSFPADQISIAGQDSLQIIIFVG---TLARSYAGT 219
Query: 324 NDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISRE--IAAGGAKNEI- 380
+G S S + ++NP EA L AA++ R ++A G+ +
Sbjct: 220 TSLTGGS-----SCKWYVNPQVPEATSL----------AASLQHKRSPIMSAAGSTQRVP 264
Query: 381 ------HKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDS-FCYTACPLMIGDRQCNKKV 433
HK VS+IK+ + EK +W+ +T +K D + Y +C R+C KK
Sbjct: 265 RISTAEHKKVSEIKHLHPFKHEKVEWLVT---VTVLKIDQLWWYESC------RKCLKKT 315
Query: 434 TQSGNRWQC-DRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCP 485
G+ ++C D + + RY L D+TG T F + I+ P
Sbjct: 316 KPHGDAYKCSDSGCGHVGPPNPRYRLLITAGDETGETDFILFGHMAQRIVKKP 368
>gi|302825612|ref|XP_002994408.1| hypothetical protein SELMODRAFT_432333 [Selaginella moellendorffii]
gi|300137673|gb|EFJ04528.1| hypothetical protein SELMODRAFT_432333 [Selaginella moellendorffii]
Length = 203
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 84/184 (45%), Gaps = 22/184 (11%)
Query: 285 GRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPD 344
G S+++ LW EG +++E G P + +K +++D++GKSI + L ++P+
Sbjct: 39 GHSIDMCLWDSKAEDEGSEIEEKPGRGQKPTVCLKGSRISDYNGKSISVTGGSTLLVDPE 98
Query: 345 FAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVR 404
+ L EW +A+ +H T S K G + +++
Sbjct: 99 LEDVSWLCEWM---------------VASYNTTIFVHVTNSSSKAVISGTKTVSEMLSIN 143
Query: 405 AFITFIKSDSFCYTACPLMIGDRQCNKKVTQ-SGNRWQCDRCNQEIDECDYRYLLQAQIQ 463
+K+ F Y AC ++ QC KKVTQ S + WQC C+ + + ++Y L I
Sbjct: 144 -----LKTGDFYYPACVKVVNGSQCGKKVTQVSESMWQC-TCDTDSGDIHFKYALHLCIL 197
Query: 464 DQTG 467
D TG
Sbjct: 198 DSTG 201
>gi|413953822|gb|AFW86471.1| hypothetical protein ZEAMMB73_862151 [Zea mays]
Length = 662
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 86/353 (24%), Positives = 150/353 (42%), Gaps = 52/353 (14%)
Query: 157 LLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATS 216
L+D +GG + + F +I+ G VY +S +K A + + + N+ I +
Sbjct: 182 LIDEEGGSAHAQIYPPLAAVFKPMIKEGNVYNVSYVQIKKANRMYKPVDNDIMIGFTKWT 241
Query: 217 TVDLCTEEDDSIPKQQFSFRHISEIESAEN--NSIVDVIGIVISVNPSVPILRKNGMETQ 274
V+ E + P+ +S ++ + + +DVIG V ++ V +R +TQ
Sbjct: 242 IVEELIEVPPAFPELVYSLTPFDQLTTLVDIREYFIDVIGAVTMIS-DVATIRTKMRQTQ 300
Query: 275 --RRILNLKDTSGRSVELTLWG--------DFCNKEGQ-KLQEMVDVGFFPVLSVKSGKV 323
+R + +++ S +E+ LWG D + GQ LQ ++ VG L+
Sbjct: 301 TAKRSVTIQNESCTPLEVVLWGEQATSFPADQISIAGQDSLQIIIFVG---TLARSYAGT 357
Query: 324 NDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISRE--IAAGGAKNEI- 380
+G S S + ++NP EA L AA++ R +AA G+ +
Sbjct: 358 TSLTGGS-----SCKWYVNPQVPEATSL----------AASLQHKRSPIMAAAGSTQHVP 402
Query: 381 ------HKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDS-FCYTACPLMIGDRQCNKKV 433
HK VS+IK+ + EK +W+ +T +K D + Y +C R+C KK
Sbjct: 403 RISTAEHKKVSEIKHLHPFKHEKVEWLIT---VTVLKIDQLWWYESC------RKCLKKT 453
Query: 434 TQSGNRWQC-DRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCP 485
G+ ++C D + + RY L D+TG T F + I+ P
Sbjct: 454 KPHGDAYKCSDSGCGHVGPPNPRYRLLITAGDETGETDFILFGRMAQRIVKKP 506
>gi|324515631|gb|ADY46264.1| Replication factor A 73 kDa subunit [Ascaris suum]
Length = 124
Score = 73.6 bits (179), Expect = 3e-10, Method: Composition-based stats.
Identities = 37/119 (31%), Positives = 64/119 (53%), Gaps = 1/119 (0%)
Query: 438 NRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQ 497
N+++C++CN +D Y LL ++ D +G WVT F+E ++LG A EL L +
Sbjct: 3 NQYRCEKCNLTLDSFKYVLLLSMELSDFSGSHWVTVFEEKATKLLGKTAAELGDLLESNR 62
Query: 498 DDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
D + ++ + F +Y FR++ K E Y D +R+K +V + V+Y L ++K
Sbjct: 63 LD-EYNDVFSAVRFREYTFRIRAKSEFYNDTERIKWSVFELNNVDYDKYVEELTKAVTK 120
>gi|391328094|ref|XP_003738527.1| PREDICTED: replication factor A protein 1-like [Metaseiulus
occidentalis]
Length = 319
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 118/263 (44%), Gaps = 34/263 (12%)
Query: 48 GTFN--LQNSGTFNSQNPGSFSTPNSGTFRAPNAGSIVRSFQPTVQPPYQPPPNFRNHGP 105
GTFN + G FN N PN G + S+ + QP +P
Sbjct: 19 GTFNVPMIMMGDFNLTN--EMDRPNEGFVDQLDHTSLNKHDQPKRKP------------- 63
Query: 106 ILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEI 165
R++ +L G I+ RV +K ++ ++ +GK+F+F +L + GE+
Sbjct: 64 --------RLLRDISLAKVGGE--IQGRVKSKTLVKSWSKGNANGKIFNF-VLRNTSGEM 112
Query: 166 RVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEED 225
+ D ++ I VG Y ++ +K A + + ++ E+ L S + T ED
Sbjct: 113 NIIVSGNAADDIFDKIAVGNCYKVNAFKVKSAYQQYRVTGHDCELQLTKLSRIIEITGED 172
Query: 226 DSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSG 285
+PK Q S ++EI N+ VD++ ++ V P ++G T+++ + + D +
Sbjct: 173 --LPKIQASITTLAEIIFKPVNATVDILAVIFDVRPPQTFNCRDGTNTEKQTVLVVDDTM 230
Query: 286 RSVELTLWGDFC----NKEGQKL 304
+ VE+ LW +F NKEG+ +
Sbjct: 231 KMVEIGLWSEFVGKLDNKEGEAV 253
>gi|413948787|gb|AFW81436.1| hypothetical protein ZEAMMB73_509972 [Zea mays]
Length = 524
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 84/353 (23%), Positives = 150/353 (42%), Gaps = 52/353 (14%)
Query: 157 LLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATS 216
L+D +GG + + F +I+ G VY +S +K A + + + N+ I +
Sbjct: 44 LIDEEGGSAHAQIYPPLAAVFKPMIKEGNVYNVSYVQIKKANRMYKPVDNDIMIGFTKWT 103
Query: 217 TVDLCTEEDDSIPKQQFSFRHISEIESAEN--NSIVDVIGIVISVNPSVPILRKNGMETQ 274
T++ E + P+ +S ++ + + +DVIG V ++ V +R +TQ
Sbjct: 104 TIEELIEVPPAFPEIVYSLTPFDQLTTLVDIREYFIDVIGAVTMIS-DVATIRTKMRQTQ 162
Query: 275 --RRILNLKDTSGRSVELTLWG--------DFCNKEGQ-KLQEMVDVGFFPVLSVKSGKV 323
+R + +++ S +E+ LWG D + GQ LQ ++ VG L+
Sbjct: 163 TAKRSVTIQNESCTPLEVVLWGGQATSFPADQISIAGQDSLQIIIFVG---TLARSYAGT 219
Query: 324 NDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISRE--IAAGGAKNEI- 380
+G S S + ++NP EA L AA++ R ++A G+ +
Sbjct: 220 TSLTGGS-----SCKWYVNPQVPEATSL----------AASLQHKRSPIMSAAGSTQRVP 264
Query: 381 ------HKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDS-FCYTACPLMIGDRQCNKKV 433
HK VS+IK+ + EK +W+ +T +K D + Y +C R+C KK
Sbjct: 265 RISTAEHKKVSEIKHLHPFKHEKVEWLVT---VTVLKIDQLWWYESC------RKCLKKT 315
Query: 434 TQSGNRWQC-DRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCP 485
G+ ++C D + + RY L D+ G T F + I+ P
Sbjct: 316 KPHGDAYKCSDSGCGHVGPPNPRYRLLITAGDEIGETDFILFGRMAQRIVKKP 368
>gi|116309010|emb|CAH66127.1| OSIGBa0135L04.1 [Oryza sativa Indica Group]
Length = 502
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 80/347 (23%), Positives = 143/347 (41%), Gaps = 39/347 (11%)
Query: 130 IKARVTAKGDLRRYNNARGDGKVFSFDL--LDSDGGEIRVTCFNAVVDRFYEIIEVGRVY 187
I ARV+ D N G G +F DL LD G I + +D +++ +VY
Sbjct: 18 ILARVSRLWDFCDLN---GSGNIFHTDLVLLDQMGNSIHAQIYPPAIDSLRPLLKEQKVY 74
Query: 188 LISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENN 247
I +++ A + + + N I +T + E P FS S+I +
Sbjct: 75 YIDSFTVRYANRTYRPVDNSLMIVFSKWTTFEEYIEPAADFPGITFSLTPFSDIPHLVDK 134
Query: 248 SI--VDVIGIVISV-NPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGD--------- 295
+I VDV+G++ V +P+V + ++ +R + + D S ++ +TLWG+
Sbjct: 135 TIFYVDVMGVITEVGSPTVVRPKSRNADSLKRTIQICDASNSTMPITLWGERADAFDANS 194
Query: 296 FCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPST--QLFINPDFAEAHELRE 353
N + Q +V VG V D++G + S+ + ++N D E EL+E
Sbjct: 195 VYNAGQTQAQVIVFVGTL---------VKDYTGLGLTVTGSSPCKWYLNLDIPEVLELKE 245
Query: 354 WFDSGGKNAATVSISREIAAGGAKNEI-HKTVSQIKNEGLGRSEKPDWVTVRAFITFIKS 412
F + N VS A G ++ KT+ +I ++ ++
Sbjct: 246 SFSA---NFRPVSWVDNPATGYNQDTAEEKTIQEILALNPHKNRSTRFIVNVTVRRICSE 302
Query: 413 DSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRC-NQEIDECDYRYLL 458
+S+ Y +C R C + G+ ++C C N I + Y+ +L
Sbjct: 303 NSWWYNSC------RLCYRTSKPYGSSYKCSSCSNIGIPDPRYKVVL 343
>gi|242048790|ref|XP_002462141.1| hypothetical protein SORBIDRAFT_02g020420 [Sorghum bicolor]
gi|241925518|gb|EER98662.1| hypothetical protein SORBIDRAFT_02g020420 [Sorghum bicolor]
Length = 770
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 113/255 (44%), Gaps = 16/255 (6%)
Query: 118 IAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRF 177
++ ++P + W IK RV L +G L+D G I + + +F
Sbjct: 236 LSKIDPTRHNWTIKVRVARMWKLSSTPKWKG-VTAMELVLVDEQGMGITACVGHKDLTKF 294
Query: 178 YEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEA-TSTVDLCTEEDDSIPKQQFSFR 236
+ + GR Y+I K + + +N + N I+ T+ ++ T+ +P+ F+F
Sbjct: 295 ADALVEGRSYVIKKFQVSRHPRKYNPVPNPQTIYFTPWTAIEEIPTKLSTQLPRNVFNFV 354
Query: 237 HISEIESAENNSIVDVIGIVISVNPSV--------PILRKNGME--TQRRILNLKDTSGR 286
E+ N V +V + P V +LR NG+ T RR+L L+D S R
Sbjct: 355 DFEELGQRRRNEHGLVGDVVFGLLPDVIGQLTVIHLLLRSNGLNGVTVRRVLELRDLSDR 414
Query: 287 SVELTLWGDFCNK-EGQKLQEMVDVGFFPVLSVKSG-KVNDFSGKSI-GTIPSTQLFINP 343
+ +TLWG+ EG+ L E + P++ V +G +V + G + + T+ ++N
Sbjct: 415 LLHITLWGEHATSFEGESLTETI-AKDEPIVMVFAGVQVKQYLGSTTCASGGGTKWYMNI 473
Query: 344 DFAEAHELREWFDSG 358
D AE + R + G
Sbjct: 474 DLAEMNAFRARYLQG 488
>gi|149676198|dbj|BAF64710.1| putative transposase [Ipomoea tricolor]
Length = 517
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 91/422 (21%), Positives = 174/422 (41%), Gaps = 37/422 (8%)
Query: 121 LNPYQGRWAIKARVTAKGDLRRYN--NARGDGKVFSFDLL--DSDGGEIRVTCFNAVVDR 176
++P AIK R+ +R Y RG + + + D +G + V V++
Sbjct: 11 ISPMNTTSAIKVRL-----IRSYEVPERRGAASIKCQECIFHDKEGTVLHVNIPKEFVEK 65
Query: 177 FYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEI-FLEATSTVDLCTEEDDSIPKQQFSF 235
+ ++++G+VY I + + +++ + F T +L +D P F
Sbjct: 66 YSAMLKIGQVYSIRNFLVISNFYTYKTSPHKYMLKFYYKTVVREL---KDIVFPSHMFRL 122
Query: 236 RHISEIESA---ENNSIVDVIGIVISVN-PSVPILRKNGMETQRRILNLKDTSGRSVELT 291
+ +S+++ ++D+IG+V+ +N P ++ G T+ L+DT G ++ T
Sbjct: 123 QPLSQLKQKIDINEKELIDLIGMVVEINTPQDKVI--AGKATRLIDFLLEDTEGTQIKCT 180
Query: 292 LWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSG--KSIGTIPSTQLFINPDFAEAH 349
+W D +K Q +L KV+ +G K + TQ+++N DF E
Sbjct: 181 VWDDHVSKLEPFYQSTKQDPVIILLQFCRVKVDLSTGDIKVCSSFDVTQIWVNSDFPEFQ 240
Query: 350 ELREWFDSGGKNAATVSISREIAAGGAKNEIHK------TVSQIKNEGLGRSEKPDWVTV 403
E R+ ++ ++ G A + T+S+I + E D+
Sbjct: 241 EFRDRLKGEQTPMRSIVSMSNMSYGSAFEDFSSGQMNVFTISEIYQ----KKEYGDFWVA 296
Query: 404 RAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQ 463
+ S + Y +C CNKK+T + CD+C + E RY ++ +
Sbjct: 297 AKIVGIESSWDWFYVSCK----SHGCNKKLTLRNTLYDCDKCKRTWQEGILRYRVKVRAV 352
Query: 464 DQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEE 523
D G + + E+LG A +L + L+ +R I S V LFR+ +++E
Sbjct: 353 DLDGNAPFILWDKECTELLGISATDLR--QKILEGPLRIPREIESLVGLAMLFRIAVRKE 410
Query: 524 LY 525
+
Sbjct: 411 QF 412
>gi|226506010|ref|NP_001152059.1| retrotransposon protein [Zea mays]
gi|195652219|gb|ACG45577.1| retrotransposon protein [Zea mays]
Length = 525
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 80/388 (20%), Positives = 149/388 (38%), Gaps = 37/388 (9%)
Query: 117 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL--DSDGGEIRVTCFNAVV 174
P+A L+P I+ RV K + R A DG + +L+ D G I A+
Sbjct: 5 PVAELHPQSTNVVIRVRVIRKWEFR---GATNDGPLQHINLVLADEQGTPIHAEIAAALA 61
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
+IE+ +VY + + + P++ F + N + I + + + P+ +
Sbjct: 62 VDKGSLIEIEKVYELKRFRVTPSRNYFKPVDNNFMIQFTLYTQAKVVKDPPQVFPRYIYK 121
Query: 235 FRHISEIESAENNS--IVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTL 292
IE +N ++DV+G++ +NP P L T R + +K+TS S+++TL
Sbjct: 122 LTCFENIEDNIDNRTYLIDVLGMLTQINP--PHLIGYNNSTIIRDIFIKNTSDMSLKITL 179
Query: 293 WG---------DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKS-IGTIPSTQLFIN 342
WG D ++ + ++ VGF F G+ + + ++ + N
Sbjct: 180 WGNQASGFSINDVYSQSNNQPIVILLVGFL---------AKRFKGQPYLSSTTASSWYFN 230
Query: 343 PDFAEAHELREWFDSGG-KNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWV 401
P EA + + + EI N HKTV ++ + +
Sbjct: 231 PGIPEAQTYYNRLQNNDLQLIQPTAAEEEILLSQPPNLEHKTVEELLDIDPDMFPPEGYR 290
Query: 402 TVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQ 461
+++ + Y +C +C+K +Q+ + C C + ++RY L
Sbjct: 291 CTVTISRIVENSKWWYPSC------SRCHKSSSQTSTGYHCTSCG--CTDINFRYKLSFI 342
Query: 462 IQDQTGLTWVTAFQESGEEILGCPAKEL 489
D T F +I+G P L
Sbjct: 343 ATDGTCEAEFFCFDSIARKIVGKPCDNL 370
>gi|413953613|gb|AFW86262.1| hypothetical protein ZEAMMB73_440412 [Zea mays]
Length = 629
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 85/354 (24%), Positives = 150/354 (42%), Gaps = 54/354 (15%)
Query: 157 LLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATS 216
L+D +GG + + F +I+ G VY +S +K A + + + N+ I +
Sbjct: 182 LIDEEGGSAHAQIYPPLAAVFKPMIKEGNVYNVSYVQIKKANRMYKLVDNDIMIGFTKWT 241
Query: 217 TVDLCTEEDDSIPKQQFSFRHISEIESAEN--NSIVDVIGIVISVNPSVPILRKNGMETQ 274
TV+ E + P+ +S ++ + + +DVIG V ++ V +R +TQ
Sbjct: 242 TVEELIEVPPAFPELVYSLTPFDQLTTLVDIREYFIDVIGAVTMIS-DVATIRTKMRQTQ 300
Query: 275 --RRILNLKDTSGRSVELTLWG--------DFCNKEGQ-KLQEMVDVGFFPVLSVKSGKV 323
+R + +++ S +E+ LWG D + GQ LQ ++ VG
Sbjct: 301 TAKRSVTIQNESCTPLEVVLWGEQATSFPADQISIAGQDSLQIIIFVGTL---------A 351
Query: 324 NDFSG-KSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISRE--IAAGGAKNEI 380
++G S+ S + ++NP EA L AA++ R +A G+ +
Sbjct: 352 RSYAGTTSLTCGSSCKWYVNPQVPEATSL----------AASLQHKRSPIMAVAGSTQRV 401
Query: 381 -------HKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDS-FCYTACPLMIGDRQCNKK 432
HK VS+IK+ + EK +W+ +T +K D + Y +C R+C KK
Sbjct: 402 TRISTAEHKKVSEIKHMHPFKHEKVEWLIT---VTVLKIDQLWWYESC------RKCLKK 452
Query: 433 VTQSGNRWQC-DRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCP 485
G+ ++C D + + RY L D+TG T F + I+ P
Sbjct: 453 TKPHGDAYKCSDSGCGHVGPPNPRYRLLITAGDETGETDFILFGRMAQHIVKKP 506
>gi|414589167|tpg|DAA39738.1| TPA: hypothetical protein ZEAMMB73_875706 [Zea mays]
Length = 487
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 109/244 (44%), Gaps = 64/244 (26%)
Query: 295 DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREW 354
D + GQ+L +MVD P++++KS KV+DF G S+ TI + L INPD EA L W
Sbjct: 214 DLATRTGQELLDMVDSS--PIVAIKSLKVSDFQGVSLPTIGRSTLEINPDLLEAKNLMSW 271
Query: 355 FDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDS 414
+ S GK+ + IS E AG + K + + R F++ I SD
Sbjct: 272 YVSEGKDISLAPISAE--AGATRAGGFKYM----------------YSDRVFLSHITSD- 312
Query: 415 FCYTACPLMIGDRQCNKKVTQS-GNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTA 473
P M +KVT+ G+ + C+ C + EC L A D W+
Sbjct: 313 ------PAM-----GQEKVTEVFGSGYWCEGCQKNDSECS----LSADELD-----WIR- 351
Query: 474 FQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKI 533
+E G+ Y+LK ++ + ++FR+ + ++ Y +E+R +I
Sbjct: 352 -KEEGDNS--------YVLK------------LKEATWVPHMFRVSVTQDEYMNEKRQRI 390
Query: 534 TVIR 537
T+ R
Sbjct: 391 TMDR 394
>gi|195572615|ref|XP_002104291.1| GD20884 [Drosophila simulans]
gi|194200218|gb|EDX13794.1| GD20884 [Drosophila simulans]
Length = 268
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 70/248 (28%), Positives = 112/248 (45%), Gaps = 25/248 (10%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
I PI +L P +IKARV K ++ +++ G V+ LLD + GEI F
Sbjct: 40 IQPICSLTPGIYSSSIKARVIWKSEITQWSTGTKTGIVYIMHLLD-ESGEITGIVFADYD 98
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDL--CTEEDDSIPKQQ 232
+ FY+ I+ G VY IS ++ A ++ N +++F + + L C + IP+++
Sbjct: 99 NGFYDQIQPGLVYHISGFEVEKAISSYKVSDNPYQLFFRPNTVLQLSACGQ----IPREK 154
Query: 233 FSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTL 292
++F + ++ S + VD IGI V L + G R IL L D V L L
Sbjct: 155 YNFLPLLKVSSKADEDPVDAIGICTEVGR----LEERGGYFIREIL-LVDPDNHPVMLNL 209
Query: 293 W-GDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPS--TQLFINPDFAEAH 349
W + N GQ V+ VK + F + S T + INPD +A
Sbjct: 210 WQKEAVNFVGQPTD---------VIVVKGARAR-FHNNEMKLNASWYTNVQINPDIPDAT 259
Query: 350 ELREWFDS 357
+L W+++
Sbjct: 260 DLLAWYNN 267
>gi|414877600|tpg|DAA54731.1| TPA: hypothetical protein ZEAMMB73_628014, partial [Zea mays]
Length = 489
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 83/391 (21%), Positives = 149/391 (38%), Gaps = 39/391 (9%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL--DSDGGEIRVTCFNA 172
II + L+P I+ RV K + R A DG + +L+ D G I A
Sbjct: 6 IIYMTELHPQSTNVVIRVRVIRKWEFR---GATNDGPLQHINLVLADEQGTSIHAEIAAA 62
Query: 173 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQ 232
+ +IE+ +VY + + + P++ F + N + I + + + P+
Sbjct: 63 LAVDKGSLIEIEKVYELKRFRVTPSRNYFKPVDNNFMIQFTLYTQAKVVKDPPQMFPRYI 122
Query: 233 FSFRHISEIESAENNS--IVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVEL 290
+ IE +N ++DV+G++ ++P P L T R + +K+ S S+++
Sbjct: 123 YKLTSFENIEDNIDNRTYLIDVLGMLTQIDP--PHLIGYNNSTIIRDIYIKNASDMSLKI 180
Query: 291 TLWG---------DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSI--GTIPSTQL 339
TLWG D N+ + ++ VGF F G+ GT S+
Sbjct: 181 TLWGNQASNFSISDVYNQSSNQPIVILLVGFL---------AKRFKGQPYLSGTTASSWY 231
Query: 340 FINPDFAEAHELREWFDSGGKNAATVSISR-EIAAGGAKNEIHKTVSQIKNEGLGRSEKP 398
F NP EA + + ++ EI N HKTV ++ +
Sbjct: 232 F-NPGIPEAQTYYNRLQNNDLQLIQPTAAKEEIQVSQPPNLEHKTVEELLDIDPDMFPPE 290
Query: 399 DWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLL 458
+ +++ + Y +C +C+K +Q+ + C C + ++RY L
Sbjct: 291 GYRCTVTISRIVQNSKWWYPSC------SRCHKSSSQTSTGYHCTSCG--CTDINFRYKL 342
Query: 459 QAQIQDQTGLTWVTAFQESGEEILGCPAKEL 489
D T F +I+G P L
Sbjct: 343 SFIATDGTCEAEFFCFDSIARKIVGKPCDNL 373
>gi|414877599|tpg|DAA54730.1| TPA: hypothetical protein ZEAMMB73_628014 [Zea mays]
Length = 495
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 83/391 (21%), Positives = 149/391 (38%), Gaps = 39/391 (9%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL--DSDGGEIRVTCFNA 172
II + L+P I+ RV K + R A DG + +L+ D G I A
Sbjct: 6 IIYMTELHPQSTNVVIRVRVIRKWEFR---GATNDGPLQHINLVLADEQGTSIHAEIAAA 62
Query: 173 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQ 232
+ +IE+ +VY + + + P++ F + N + I + + + P+
Sbjct: 63 LAVDKGSLIEIEKVYELKRFRVTPSRNYFKPVDNNFMIQFTLYTQAKVVKDPPQMFPRYI 122
Query: 233 FSFRHISEIESAENNS--IVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVEL 290
+ IE +N ++DV+G++ ++P P L T R + +K+ S S+++
Sbjct: 123 YKLTSFENIEDNIDNRTYLIDVLGMLTQIDP--PHLIGYNNSTIIRDIYIKNASDMSLKI 180
Query: 291 TLWG---------DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSI--GTIPSTQL 339
TLWG D N+ + ++ VGF F G+ GT S+
Sbjct: 181 TLWGNQASNFSISDVYNQSSNQPIVILLVGFL---------AKRFKGQPYLSGTTASSWY 231
Query: 340 FINPDFAEAHELREWFDSGGKNAATVSISR-EIAAGGAKNEIHKTVSQIKNEGLGRSEKP 398
F NP EA + + ++ EI N HKTV ++ +
Sbjct: 232 F-NPGIPEAQTYYNRLQNNDLQLIQPTAAKEEIQVSQPPNLEHKTVEELLDIDPDMFPPE 290
Query: 399 DWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLL 458
+ +++ + Y +C +C+K +Q+ + C C + ++RY L
Sbjct: 291 GYRCTVTISRIVQNSKWWYPSC------SRCHKSSSQTSTGYHCTSCG--CTDINFRYKL 342
Query: 459 QAQIQDQTGLTWVTAFQESGEEILGCPAKEL 489
D T F +I+G P L
Sbjct: 343 SFIATDGTCEAEFFCFDSIARKIVGKPCDNL 373
>gi|391327595|ref|XP_003738283.1| PREDICTED: replication factor A protein 1-like [Metaseiulus
occidentalis]
Length = 296
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 109/232 (46%), Gaps = 10/232 (4%)
Query: 130 IKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLI 189
I+ RV ++ +R ++ +G +FSF + DS +I V + +E I VG+ Y+I
Sbjct: 51 IQGRVESESPIRSWSREGAEGIIFSFIVNDS-SSDINVVASGEICAELHEKISVGKCYVI 109
Query: 190 SKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSI 249
S LK +N ++ EI L S V ++P+ +F ++EI S+ NS+
Sbjct: 110 SAFKLKKINPQYNITSHQLEIQLTKISKVTEII--GINLPENTTNFITLAEIGSSAVNSM 167
Query: 250 VDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVD 309
VD++GI+ V + ++G +++ + + D + + V L+LW + + + V
Sbjct: 168 VDILGIIHEVADEQNFMCRDGTSRKKKNVRIVDDTKKIVTLSLWSEHADILNGMESQCVS 227
Query: 310 VGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKN 361
+ + KV + T ST + A++ L++W++ G++
Sbjct: 228 IHNVVIRVFNMKKV-------LTTTSSTSAKLAVITADSERLQKWWNEEGQD 272
>gi|322783921|gb|EFZ11105.1| hypothetical protein SINV_13954 [Solenopsis invicta]
Length = 301
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 77/159 (48%), Gaps = 34/159 (21%)
Query: 117 PIAALNPYQGR--WAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
PIA LN GR IKAR K ++ +NN R GK F L+D+ G+I T F +V
Sbjct: 147 PIAKLN---GRDSGVIKAREIEKSQVKLWNNNRRRGKYFFITLIDA-SGKISCTAFQDMV 202
Query: 175 DRFYEII---------------------------EVGRVYLISKGSLKPAQKNFNHLKNE 207
D+F+ +I +VG VY +S+ LK A K FN KN
Sbjct: 203 DKFFNLIVVSVPCAESDVSDDRANLPFQPFHLILQVGNVYHVSRCHLKKADKRFNTTKNN 262
Query: 208 WEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAEN 246
+E+ + + ++ C + S+P F+F I++I+S +N
Sbjct: 263 YELIVHFFTRLEPC-HDHYSVPTIWFNFSTINQIKSKKN 300
>gi|115440927|ref|NP_001044743.1| Os01g0838100 [Oryza sativa Japonica Group]
gi|56784643|dbj|BAD81690.1| helicase-like protein [Oryza sativa Japonica Group]
gi|113534274|dbj|BAF06657.1| Os01g0838100 [Oryza sativa Japonica Group]
Length = 474
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 89/419 (21%), Positives = 168/419 (40%), Gaps = 39/419 (9%)
Query: 121 LNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDL--LDSDGGEIRVTCFNAVVDRFY 178
++P W I+A++ D Y D DL +D G + D+F
Sbjct: 48 ISPASRGWKIRAKIARMWD---YTGTADDLPPIHVDLVLIDEKGNAMYAEIPGVEADKFR 104
Query: 179 EIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHI 238
+++ +VY SK + P++ + N++ I L + V+ E P F+
Sbjct: 105 PLLQESKVYTFSKFLILPSKPAYKPFPNKYMIKLTPWTNVEQVNEVPADFPSHVFNLVQF 164
Query: 239 S--EIESAENNSIVDVIGIVISVNPSVPI-LRKNGMETQRRILNLKDTSGRSVELTLWG- 294
S + DVIG++I V+ + + +T +R++ L+D + V+L LWG
Sbjct: 165 SYLSLRVGMQEYFTDVIGMIIGVSKLAYVRMASKTSDTPKRVIALRDLANCEVKLVLWGE 224
Query: 295 ---DFCNKEGQKL-QEMVDVGFFPVLSVKS-GKVNDFSGKSIGTIPSTQLFINPDFAEAH 349
DF + Q+ VG F +K+ SG S + + ++N D
Sbjct: 225 HAPDFDADAVHSVGQDNAVVGIFVDTLMKAYNNEETLSGGS-----ACKWYLNEDIP--- 276
Query: 350 ELREWFDSGGKNAATVS-ISREIAAGGAKNEI----HKTVSQIKNEGLGRSEKPDWVTVR 404
E+ ++FDS G +A + IS + G+ HK+V+ +K + +
Sbjct: 277 EINQFFDSLGDSAPKIQWISTGAESFGSSQRPARLEHKSVADLKKIDPWEAAGAGFSCTV 336
Query: 405 AFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDR-CNQEIDECDYRYLLQAQIQ 463
S S+ +++C +C++ T G+ ++C C+ YR L
Sbjct: 337 TIAKLSPSQSWWFSSC------SRCHRAATAYGSSYKCSSGCSSVTAIPKYRLCLIG--T 388
Query: 464 DQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKE 522
D T F ++++G P L +K++ + D + I + V ++ F + + E
Sbjct: 389 DGTNSAEFVLFGRVAQQVVGRPVMNL--IKFQGRSD-NIPKEIAAVVSQKFTFAVSVTE 444
>gi|413950218|gb|AFW82867.1| hypothetical protein ZEAMMB73_164578, partial [Zea mays]
Length = 73
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 44/68 (64%)
Query: 284 SGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINP 343
SGRS+ +TL G FC+ EG++LQE D G PV+++K V DF G+S+ +I TQ I P
Sbjct: 1 SGRSISITLCGKFCDVEGRQLQEQCDSGLNPVIALKGACVTDFVGRSLSSIGPTQFKIYP 60
Query: 344 DFAEAHEL 351
DF E L
Sbjct: 61 DFHETFFL 68
>gi|41393261|gb|AAS01984.1| expressed protein, with alternative splicing isoforms [Oryza sativa
Japonica Group]
Length = 545
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 100/424 (23%), Positives = 162/424 (38%), Gaps = 43/424 (10%)
Query: 127 RWAIKARVTAKGDLRRYNNARGDGKVFSFDL--LDSDGGEIRVTCFNAVVDRFYEIIEVG 184
RW ++ R T + A K+ DL LD G + V +F +++ G
Sbjct: 15 RWRVRVRATR---FSEFTTANEPDKILRLDLVLLDEQGDMMDAQIPGRRVVQFKPLLKEG 71
Query: 185 RVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESA 244
VY I + A+ + + A +TV T + P E+ +
Sbjct: 72 AVYYIKYFEVAEARPQYRPVDRLLMAKFTAHTTVTEDTGPPSTFPSYACKILSFDELRAR 131
Query: 245 --ENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGR-SVELTLWGDFCNK-E 300
+ + I D IGI+ ++ P + M+ +LN T+GR +V + LWG +
Sbjct: 132 AYKKDIISDAIGIMTAIGPVQTVSYAGVMKA---VLNDHITNGRETVVVALWGPHATQFH 188
Query: 301 GQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGK 360
+ LQ+ D G +L V G F + + ST P+ A E S
Sbjct: 189 AENLQQQADNGHVVMLFV--GLTVKFRDRQLALQGSTVCRWYPN-APIQETISLISSLHG 245
Query: 361 NAATVSISREIAAG-GAKNEIHKTVSQI----KNEGLGRSEKPDWVTVRAFITFIKSDSF 415
N V R I A G K I+ VS I +E LG S +V + ++ +
Sbjct: 246 NPQVV---RMIEANFGQKEAINVKVSDICDLNPHEALGNS----YVVNIIIRDLVPAEPW 298
Query: 416 CYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQA-----QIQDQTGLTW 470
Y AC + + GN ++C RC+ + E YR ++ DQ
Sbjct: 299 WYIAC------STYKRGTAREGNAYKCPRCSTDAIETRYRVVIMGIDPSDLANDQAKAAE 352
Query: 471 VTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQR 530
T F E GE+++G P L + +D V I++ QY+ R + G QR
Sbjct: 353 FTFFGEIGEQLIGRPVLNLVASVHGARDIV--PPEIKAIFGRQYVIRTSVSR---GSLQR 407
Query: 531 VKIT 534
+++
Sbjct: 408 NRVS 411
>gi|302755953|ref|XP_002961400.1| hypothetical protein SELMODRAFT_403248 [Selaginella moellendorffii]
gi|300170059|gb|EFJ36660.1| hypothetical protein SELMODRAFT_403248 [Selaginella moellendorffii]
Length = 191
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 90/211 (42%), Gaps = 42/211 (19%)
Query: 328 GKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQI 387
GKSI + L ++P+ + L EW + V ++ N K V+ +
Sbjct: 15 GKSISVTCGSTLLVDPELEDVSWLCEWMVASYNTTIFVHVT---------NSSSKAVTSV 65
Query: 388 KNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQ-SGNRWQCDRCN 446
K ++ F Y AC ++ QC KKVTQ S + WQ + C+
Sbjct: 66 KE--------------------FQTGDFYYPACVKVVNGSQCGKKVTQVSESMWQWNSCD 105
Query: 447 QEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDD-----VR 501
+ + ++Y L I D T W AF ++ EI+ PA ++ LQDD +
Sbjct: 106 TDSGDIYFKYALHLCILDSTRHIWAVAFDDAANEIVRMPACKM----AALQDDDYTVFLA 161
Query: 502 FGEIIRSRVFNQYLFRLKIKEELYGDEQRVK 532
+ IRS+++N ++ K E Y D +++K
Sbjct: 162 VMDSIRSKMYN---LKICYKLESYKDTEKLK 189
>gi|321477092|gb|EFX88051.1| hypothetical protein DAPPUDRAFT_96245 [Daphnia pulex]
Length = 270
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 84/180 (46%), Gaps = 5/180 (2%)
Query: 116 IPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVD 175
I + L+P RW I+ RV + R +GD +F F LLDS G ++V F D
Sbjct: 38 IDVNKLSPDLRRWKIRGRVCR---ISRLFPFKGDRNMFYFGLLDS-SGLLKVKAFGGDAD 93
Query: 176 RFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSF 235
++Y I+E G ++ I + A+ N ++E+ L S VD E+DD+ P+ +
Sbjct: 94 KYYGIVEEGEMFSIEYARVSVAKNPNNIFPLKFEVILAKESEVDRL-EQDDTFPRLKVVK 152
Query: 236 RHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGD 295
+ ++ + + D+ IV V + + + + + + G +V++TLW D
Sbjct: 153 YDLKKVRDLPHGTFFDIEVIVYKAGCVVDVRKGELRKLELEVFDASMKPGETVKVTLWND 212
>gi|70936883|ref|XP_739325.1| replication factor a protein [Plasmodium chabaudi chabaudi]
gi|56516237|emb|CAH77169.1| replication factor a protein, putative [Plasmodium chabaudi
chabaudi]
Length = 255
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 107/234 (45%), Gaps = 30/234 (12%)
Query: 328 GKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAA-TVSISREIAAGGAKN-EIHKTVS 385
GK + + P T++ I+P+ +A+ L+ W+ + KN T++++ + N E KT+
Sbjct: 2 GKKLESHPKTKVEIDPELDKAYTLKNWWANNKKNVYNTINLATSTSNNNMLNLESQKTIQ 61
Query: 386 QI-KNEGLGRSE----KPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKK----VTQS 436
+I KN L E K T FI I + Y+ACP CNKK V +
Sbjct: 62 EIKKNVNLANEEVLSGKGIIFTTFGFIDHIYNSIPVYSACP------NCNKKMVATVIED 115
Query: 437 GNR---------WQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEIL-GCPA 486
G + C +CN+ + Y Y + +I D T V+AF + + I+ G A
Sbjct: 116 GEQDMDENVSESMYCSKCNKN-NIPVYNYSINLKITDNTDSLRVSAFANAAKTIMNGLSA 174
Query: 487 KELYMLKYEL--QDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRA 538
+E L+ E Q+++ ++I N++ FR+K + DE + T++
Sbjct: 175 EEFMKLRQEHISQENIENFDLIEKAKLNEFFFRIKAYMTSHMDEIKKNYTILET 228
>gi|115456687|ref|NP_001051944.1| Os03g0855700 [Oryza sativa Japonica Group]
gi|108712184|gb|ABF99979.1| expressed protein [Oryza sativa Japonica Group]
gi|113550415|dbj|BAF13858.1| Os03g0855700 [Oryza sativa Japonica Group]
Length = 599
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 100/424 (23%), Positives = 162/424 (38%), Gaps = 43/424 (10%)
Query: 127 RWAIKARVTAKGDLRRYNNARGDGKVFSFDL--LDSDGGEIRVTCFNAVVDRFYEIIEVG 184
RW ++ R T + A K+ DL LD G + V +F +++ G
Sbjct: 69 RWRVRVRATR---FSEFTTANEPDKILRLDLVLLDEQGDMMDAQIPGRRVVQFKPLLKEG 125
Query: 185 RVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESA 244
VY I + A+ + + A +TV T + P E+ +
Sbjct: 126 AVYYIKYFEVAEARPQYRPVDRLLMAKFTAHTTVTEDTGPPSTFPSYACKILSFDELRAR 185
Query: 245 --ENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGR-SVELTLWGDFCNK-E 300
+ + I D IGI+ ++ P + M+ +LN T+GR +V + LWG +
Sbjct: 186 AYKKDIISDAIGIMTAIGPVQTVSYAGVMKA---VLNDHITNGRETVVVALWGPHATQFH 242
Query: 301 GQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGK 360
+ LQ+ D G +L V G F + + ST P+ A E S
Sbjct: 243 AENLQQQADNGHVVMLFV--GLTVKFRDRQLALQGSTVCRWYPN-APIQETISLISSLHG 299
Query: 361 NAATVSISREIAAG-GAKNEIHKTVSQI----KNEGLGRSEKPDWVTVRAFITFIKSDSF 415
N V R I A G K I+ VS I +E LG S +V + ++ +
Sbjct: 300 NPQVV---RMIEANFGQKEAINVKVSDICDLNPHEALGNS----YVVNIIIRDLVPAEPW 352
Query: 416 CYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQA-----QIQDQTGLTW 470
Y AC + + GN ++C RC+ + E YR ++ DQ
Sbjct: 353 WYIAC------STYKRGTAREGNAYKCPRCSTDAIETRYRVVIMGIDPSDLANDQAKAAE 406
Query: 471 VTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQR 530
T F E GE+++G P L + +D V I++ QY+ R + G QR
Sbjct: 407 FTFFGEIGEQLIGRPVLNLVASVHGARDIV--PPEIKAIFGRQYVIRTSVSR---GSLQR 461
Query: 531 VKIT 534
+++
Sbjct: 462 NRVS 465
>gi|108712185|gb|ABF99980.1| expressed protein [Oryza sativa Japonica Group]
Length = 569
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 100/424 (23%), Positives = 162/424 (38%), Gaps = 43/424 (10%)
Query: 127 RWAIKARVTAKGDLRRYNNARGDGKVFSFDL--LDSDGGEIRVTCFNAVVDRFYEIIEVG 184
RW ++ R T + A K+ DL LD G + V +F +++ G
Sbjct: 69 RWRVRVRAT---RFSEFTTANEPDKILRLDLVLLDEQGDMMDAQIPGRRVVQFKPLLKEG 125
Query: 185 RVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIES- 243
VY I + A+ + + A +TV T + P E+ +
Sbjct: 126 AVYYIKYFEVAEARPQYRPVDRLLMAKFTAHTTVTEDTGPPSTFPSYACKILSFDELRAR 185
Query: 244 -AENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGR-SVELTLWGDFCNK-E 300
+ + I D IGI+ ++ P + M+ +LN T+GR +V + LWG +
Sbjct: 186 AYKKDIISDAIGIMTAIGPVQTVSYAGVMKA---VLNDHITNGRETVVVALWGPHATQFH 242
Query: 301 GQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGK 360
+ LQ+ D G +L V G F + + ST P+ A E S
Sbjct: 243 AENLQQQADNGHVVMLFV--GLTVKFRDRQLALQGSTVCRWYPN-APIQETISLISSLHG 299
Query: 361 NAATVSISREIAAG-GAKNEIHKTVSQI----KNEGLGRSEKPDWVTVRAFITFIKSDSF 415
N V R I A G K I+ VS I +E LG S +V + ++ +
Sbjct: 300 NPQVV---RMIEANFGQKEAINVKVSDICDLNPHEALGNS----YVVNIIIRDLVPAEPW 352
Query: 416 CYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQA-----QIQDQTGLTW 470
Y AC + + GN ++C RC+ + E YR ++ DQ
Sbjct: 353 WYIAC------STYKRGTAREGNAYKCPRCSTDAIETRYRVVIMGIDPSDLANDQAKAAE 406
Query: 471 VTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQR 530
T F E GE+++G P L + +D V I++ QY+ R + G QR
Sbjct: 407 FTFFGEIGEQLIGRPVLNLVASVHGARDIV--PPEIKAIFGRQYVIRTSVSR---GSLQR 461
Query: 531 VKIT 534
+++
Sbjct: 462 NRVS 465
>gi|358347814|ref|XP_003637946.1| Replication protein A 70 kDa DNA-binding subunit [Medicago
truncatula]
gi|358347930|ref|XP_003638003.1| Replication protein A 70 kDa DNA-binding subunit [Medicago
truncatula]
gi|355503881|gb|AES85084.1| Replication protein A 70 kDa DNA-binding subunit [Medicago
truncatula]
gi|355503938|gb|AES85141.1| Replication protein A 70 kDa DNA-binding subunit [Medicago
truncatula]
Length = 566
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 89/370 (24%), Positives = 155/370 (41%), Gaps = 28/370 (7%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
I P+AA+ + ++ RV + +NN D + LLD G+I+ + +V
Sbjct: 5 ITPVAAIVAGKINIKLRVRVVHVWTVSEFNNPNEDNSIHML-LLDDKLGKIQASAKKHLV 63
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATST---VDLCTEEDDSIPKQ 231
R +E G Y I + + ++ +++ L + +D T IP
Sbjct: 64 PRIRSNVEEGSTYDIENVLVTKNDPKYQVTQHRFKLNLIDNTKFFKIDAAT-----IPLN 118
Query: 232 QFSFRHISEIESAE-NNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVEL 290
F F +EI AE +VDVIG V+ + + NG ++ L L+D+ R V
Sbjct: 119 HFDFMPFNEILEAEREEKVVDVIGQVVERD-ELKERDVNGRRSKIMDLTLQDSESRRVHC 177
Query: 291 TLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPS---TQLFINPDFAE 347
TLW ++ + L D ++ ++ K+ + G +G + T+L + D E
Sbjct: 178 TLWANYAERMNSFLAAH-DPSSPVIVLIQQCKLKKYQG-IMGVSNAFFGTKLLLEGDLPE 235
Query: 348 AHELREWFDSGGKNAATVSISREIAAGGAK--NEIHKTVSQIKNEGLGRSEKPDWVTVRA 405
A E + D GG + SIS+ + +++ +T + + +E+ + V A
Sbjct: 236 AIEFKSKID-GGDVQVSQSISQNTTSTVVSLVDDMLQTKRMTIEDLIEATEQCQGI-VLA 293
Query: 406 FITFIKSD-SFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQD 464
I I+S+ S+ Y AC +C +V R C +CN + R+ L Q+ D
Sbjct: 294 TICGIESEYSWYYQACT------KCAGRVRTVAGRLYCGKCNTGRNAVP-RFKLHVQVMD 346
Query: 465 QTGLTWVTAF 474
TG T F
Sbjct: 347 NTGSTSFILF 356
>gi|413952523|gb|AFW85172.1| hypothetical protein ZEAMMB73_007991 [Zea mays]
Length = 504
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 79/389 (20%), Positives = 152/389 (39%), Gaps = 37/389 (9%)
Query: 117 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL--DSDGGEIRVTCFNAVV 174
PIA L+P AI+ R+ K + R A DG + +L+ D G I A+V
Sbjct: 5 PIAELDPRSTNAAIRVRIIRKWEFR---GATNDGPLRHVNLILADEQGTTIHAEIQAALV 61
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
+I++ +VY + + + P++ + + N I + + + + P+ +
Sbjct: 62 ADKDSLIQIDKVYELKRFRVAPSRNYYKPVDNSMMIQFTLYTQAKVVKDPPPNFPRYAYK 121
Query: 235 FRHISEIESAENNS--IVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTL 292
+I +N ++DV+GI+ + S+ + N R I LKD + S ++TL
Sbjct: 122 LTSFEDISDNVDNKTYLIDVLGILTEIG-SLHHVGYNNSNIIRDIF-LKDINNASTKVTL 179
Query: 293 WG---------DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKS-IGTIPSTQLFIN 342
WG + C++ K ++ VG F G++ + + + N
Sbjct: 180 WGHQASSFSVDNICDENDNKPVVILFVGCL---------AKRFKGEAYLSATAACTWYFN 230
Query: 343 PDFAEAHEL-REWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWV 401
PD EA + ++ + + E+ A N KT+ ++ + +
Sbjct: 231 PDIPEAQMYYNKLLNTKLHMIRPQATAEELQASQTPNIEDKTIEELLQLDPDMFPEQGFR 290
Query: 402 TVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQ 461
+++ + + +C +CNK +Q+ +QC CN E ++RY L
Sbjct: 291 CTVTISRLVQNGRWWFPSC------IKCNKSSSQTSTGYQCTSCNGT--ETEFRYKLSFI 342
Query: 462 IQDQTGLTWVTAFQESGEEILGCPAKELY 490
D T F I+G + L+
Sbjct: 343 ATDGTSEAEFFCFDTIARRIVGKSCQTLF 371
>gi|357450467|ref|XP_003595510.1| Replication protein A 70 kDa DNA-binding subunit [Medicago
truncatula]
gi|355484558|gb|AES65761.1| Replication protein A 70 kDa DNA-binding subunit [Medicago
truncatula]
Length = 549
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 92/435 (21%), Positives = 186/435 (42%), Gaps = 31/435 (7%)
Query: 111 APARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFD--LLDSDGGEIRVT 168
AP +I I+ ++P + W I+ RV +R + + D +S + L+D+ G I +
Sbjct: 2 AP-KIDLISDISPSKENWNIRVRVVRLWFVR---DMKKDQLPYSLEMVLMDNKGDRINAS 57
Query: 169 CFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSI 228
++ ++ + + RV+ I S+ ++ ++ ++I + + + C +D +
Sbjct: 58 VRRTLIYKYEKELREDRVFSIGNFSVASNVGSYRTARHPYKINFQYGTKIKQC--DDKFV 115
Query: 229 PKQQFSFRHISEIESAENNS--IVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGR 286
P + EI +E ++ ++DV+G++ +V R NG +++ + L D G
Sbjct: 116 PADIYVIGDSREIFQSEYDTDYLIDVMGMLKAVGVEKSYTR-NGSQSKMIPIEL-DYDGF 173
Query: 287 SVELTLWGDFCNKEGQKLQ--EMVDVGFFPVLSVKSGKVNDFSGKSI--GTIPSTQLFIN 342
++TL+G + ++ L E +V V++V K+ F G++ TI +T++ N
Sbjct: 174 RFKVTLFGPYVDELNAFLASGETENV----VVAVLLTKIKIFQGQATIQNTINATKVLFN 229
Query: 343 PDFAEAHELRE-WFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWV 401
P F A L++ ++ + +S E + + + EGL +
Sbjct: 230 PTFTAALLLKKRMVENDDSPSPGISKITEASKVSVEEDFLNLSPMTTVEGLKDCAEEKCF 289
Query: 402 TVRAFITFIKSDS-FCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQA 460
V + I DS + YT+C + CNKKV + C +CN+ + RY+++
Sbjct: 290 AVFGTVNVIVDDSDWWYTSCVV------CNKKVYPDEKMYFCSKCNKHVLNVTPRYMIKM 343
Query: 461 QIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKI 520
++ D T F E+ ++ D + I + V YLF+++
Sbjct: 344 RVVDHTDSATFVLFDRDAAELFKKTCADMIESCGMGTDASEVPKDILAMVEKSYLFKVET 403
Query: 521 ---KEELYGDEQRVK 532
+Y RVK
Sbjct: 404 NLGSSTMYEKSYRVK 418
>gi|297607725|ref|NP_001060485.2| Os07g0651500 [Oryza sativa Japonica Group]
gi|255678024|dbj|BAF22399.2| Os07g0651500 [Oryza sativa Japonica Group]
Length = 2021
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 80/356 (22%), Positives = 144/356 (40%), Gaps = 46/356 (12%)
Query: 130 IKARVTAKGDLRRYNNARGDGKVFSFDL--LDSDGGEIRVTCFNAVVDRFYEIIEVGRVY 187
I ARV+ D N G G +F DL LD G I + +D +++ +VY
Sbjct: 1641 ILARVSRLWDFCDLN---GSGNIFHTDLVLLDQMGNSIHAQIYPPAIDSLRPLLKEQKVY 1697
Query: 188 LISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENN 247
I +++ A + + + N I +T + E P FS S+I + +
Sbjct: 1698 YIDSFTVRYANRTYRPVDNSLMIVFSKWTTFEEYIEPAADFPGITFSLTPFSDIPNLVDK 1757
Query: 248 SIV---------DVIGIVISV-NPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGD-- 295
+I DV+G++ V +P+V + ++ +R + + D S ++ +TLWG+
Sbjct: 1758 TIFYVGLYGMQPDVMGVITEVGSPTVVRPKSRNADSLKRTIQICDASNSTMPVTLWGERA 1817
Query: 296 -------FCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPST--QLFINPDFA 346
N + Q +V VG V D++G + S+ + ++N D
Sbjct: 1818 DAFDANSVYNAGQTQAQVIVFVGTL---------VKDYTGLGLTVTGSSPCKWYLNLDIP 1868
Query: 347 EAHELREWFDSGGKNAATVSISREIAAGGAKNEI-HKTVSQIKNEGLGRSEKPDWVTVRA 405
E EL+E F + N VS A G ++ KT+ +I ++ ++
Sbjct: 1869 EVLELKESFSA---NFRPVSWVDNPATGYNQDTAEEKTIQEILALNPHKNRSTRFIVNVT 1925
Query: 406 FITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRC-NQEIDECDYRYLLQA 460
+S+ Y +C R C + G+ ++C C N I + Y+ +L A
Sbjct: 1926 VRRICSENSWWYNSC------RLCYRTSKPYGSSYKCSSCSNIGIPDPRYKVVLIA 1975
>gi|77551838|gb|ABA94635.1| hypothetical protein LOC_Os11g38310 [Oryza sativa Japonica Group]
Length = 764
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 100/430 (23%), Positives = 173/430 (40%), Gaps = 72/430 (16%)
Query: 111 APARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFD-----LLDSDGGEI 165
AP+ +I AL P RW IK +V R +A V F +LD++G I
Sbjct: 2 APSNLI--TALTPKNDRWRIKVKVI------RLWDAVNPTMVDEFYGIQMIVLDAEGNSI 53
Query: 166 RVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEED 225
V+ + + F I++ +Y + K + LKN +I
Sbjct: 54 HVSISKQLANHFRPKIKINSIYTFKNFKVMEHDK-YRVLKNNLKILFYH----------- 101
Query: 226 DSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNP-SVPILRKNGMETQRRILNLKDTS 284
D+I K+ + +DVIG++ + P +L KN ++ R+ N+++
Sbjct: 102 DTIVKETCLY--------------LDVIGLLSGMKPIEQRMLGKNT--SRERVCNMREIE 145
Query: 285 GR-----SVELTLWGDFCNKEGQKLQEMVD---VGFFPVLSVKSGKVNDFSGK-SIGTIP 335
V++TLWGD L MVD +G V V ++ S G
Sbjct: 146 LLLLEGEKVKITLWGDI-------LANMVDDDLLGKQTVFIATGLLVKEYEKLLSFGVTS 198
Query: 336 STQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEI----HKTVSQIKNEG 391
ST++F++ + + E+ ++ + I + + G E KT+ +I
Sbjct: 199 STEVFLDMEIPASMEILSRHNA--EKVLPTMIEVDASTQGTIEEQMFYNRKTLKEITELR 256
Query: 392 LGRSEKPDWV-TVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEID 450
++ +++ TV+A I IKS ++ Y +C +C + N + C+ C +E
Sbjct: 257 YSNIQQKEFICTVKAKIEEIKSRNWWYMSCD------KCFCGTRKESNVYICNSCGKEAV 310
Query: 451 ECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRV 510
RY++ +I D T T T F E E I G + + + Q D+ + IR
Sbjct: 311 NPKPRYVINLEISDHTTRTTCTIFNEEAERIFGHKSVSTMLEEQNGQIDM-IPDTIRQIC 369
Query: 511 FNQYLFRLKI 520
+FRLK+
Sbjct: 370 GRILIFRLKL 379
>gi|385305381|gb|EIF49362.1| subunit of heterotrimeric replication protein a [Dekkera
bruxellensis AWRI1499]
Length = 100
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 51/96 (53%), Gaps = 4/96 (4%)
Query: 78 NAGSIVRSFQPTVQPPYQPPPNFRNHGPIL---KNEAPARIIPIAALNPYQGRWAIKARV 134
NAG +S P V +N P K P + I L+PYQ W IKARV
Sbjct: 6 NAGQRSKSXSPGVVSSTSVKSEXKNXAPSSSRPKKAEPDNLYSIDQLSPYQNNWTIKARV 65
Query: 135 TAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCF 170
+ K D+R ++N RG+GK+F+ + LD + GEIR T F
Sbjct: 66 SYKSDMRTWSNQRGEGKLFNVNFLD-ETGEIRATGF 100
>gi|77552149|gb|ABA94946.1| hypothetical protein LOC_Os11g41180 [Oryza sativa Japonica Group]
Length = 800
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 98/427 (22%), Positives = 171/427 (40%), Gaps = 66/427 (15%)
Query: 111 APARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDL--LDSDGGEIRVT 168
AP+ +I AL P RW IK +V D N + + + LD++G I V+
Sbjct: 2 APSNLI--TALTPKNDRWRIKVKVIRLWDAV---NPTMVDEFYGIHMIVLDAEGNSIHVS 56
Query: 169 CFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSI 228
+ + F I++ +Y + K + LKN +I D+I
Sbjct: 57 ISKQLANHFRPKIKINSIYTFKNFKVMEHDK-YRVLKNNLKILFYH-----------DTI 104
Query: 229 PKQQFSFRHISEIESAENNSIVDVIGIVISVNP-SVPILRKNGMETQRRILNLKDTSGR- 286
K+ + +DVIG++ + P +L KN ++ R+ N+++
Sbjct: 105 VKETCLY--------------LDVIGLLSGMKPIEQRMLGKNT--SRERVCNMREIELLL 148
Query: 287 ----SVELTLWGDFCNKEGQKLQEMVD---VGFFPVLSVKSGKVNDFSGK-SIGTIPSTQ 338
V++TLWGD L MVD +G V V ++ S G ST+
Sbjct: 149 LEGEKVKITLWGDI-------LANMVDDDLLGKQTVFIATGLLVKEYEKLLSFGVTSSTE 201
Query: 339 LFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEI----HKTVSQIKNEGLGR 394
+F++ + + E+ + + I + + G E KT+ +I
Sbjct: 202 VFLDMEIPASMEILSRHN--AEKVLPTMIEVDASTQGTIEEQMFYNRKTLKEITELRYSN 259
Query: 395 SEKPDWV-TVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECD 453
++ +++ TV+A I IKS ++ Y +C +C + N + C+ C +E
Sbjct: 260 IQQKEFICTVKAKIEEIKSRNWWYMSCD------KCFCGTRKESNVYICNSCGKEAVNPK 313
Query: 454 YRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQ 513
RY++ +I D T T T F E E I G + + + Q D+ + IR
Sbjct: 314 PRYVINLEISDHTTRTTCTIFNEEAERIFGHKSVSTMLEEQNGQIDM-IPDTIRQICGRI 372
Query: 514 YLFRLKI 520
+FRLK+
Sbjct: 373 LIFRLKL 379
>gi|297724261|ref|NP_001174494.1| Os05g0523100 [Oryza sativa Japonica Group]
gi|255676500|dbj|BAH93222.1| Os05g0523100 [Oryza sativa Japonica Group]
Length = 1068
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 103/464 (22%), Positives = 183/464 (39%), Gaps = 69/464 (14%)
Query: 77 PNAGSIVRSFQPTVQPPYQP---PPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKAR 133
P+ G R ++ ++P R + N AP+ +I L P RW IK +
Sbjct: 213 PSPGKFARGYREHEDDFWRPCNGSQQLRYPVLVRDNMAPSNLI--TELTPKNDRWRIKVK 270
Query: 134 VTAKGDLRRYNNARGDGKVFSFDL--LDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISK 191
V D N + + + LD++G I V+ + + F I++ +Y
Sbjct: 271 VIRLWDAV---NPTMVDEFYGIQMIVLDAEGNSIHVSISKQLANHFRPKIKINSIYTFKN 327
Query: 192 GSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVD 251
+ K + LKN +I D+I K+ + +D
Sbjct: 328 FKVMEHDK-YRVLKNNLKILFYH-----------DTIVKETCLY--------------LD 361
Query: 252 VIGIVISVNP-SVPILRKNGMETQRRILNLKDTSGR-----SVELTLWGDFCNKEGQKLQ 305
VIG++ + P +L KN ++ R+ N+++ V++TLWGD L
Sbjct: 362 VIGLLSGMKPIEQRMLGKNT--SRERVCNMREIELLLLEGEKVKITLWGDI-------LA 412
Query: 306 EMVD---VGFFPVLSVKSGKVNDFSGK-SIGTIPSTQLFINPDFAEAHELREWFDSGGKN 361
MVD +G V V ++ S G ST++F++ + + E+ ++ +
Sbjct: 413 NMVDDDLLGKQTVFIATGLLVKEYEKLLSFGVTSSTEVFLDMEIPASMEILSRHNA--EK 470
Query: 362 AATVSISREIAAGGAKNEI----HKTVSQIKNEGLGRSEKPDWV-TVRAFITFIKSDSFC 416
I + + G E KT+ +I ++ +++ TV+A I IKS ++
Sbjct: 471 VLPTMIEVDASTQGTIEEQMFYNRKTLKEITELRYSNIQQKEFICTVKAKIEEIKSRNWW 530
Query: 417 YTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQE 476
Y +C +C + N + C+ C +E RY++ +I D T T T F E
Sbjct: 531 YMSCD------KCFCGTRKESNVYICNSCGKEAVNPKPRYVINLEISDHTTRTTCTIFNE 584
Query: 477 SGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKI 520
E I G + + + Q D+ + IR +FRLK+
Sbjct: 585 EAERIFGHKSVSTMLEEQNGQIDM-IPDTIRQICGRILIFRLKL 627
>gi|77552440|gb|ABA95237.1| hypothetical protein LOC_Os11g44840 [Oryza sativa Japonica Group]
Length = 757
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 100/430 (23%), Positives = 172/430 (40%), Gaps = 72/430 (16%)
Query: 111 APARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFD-----LLDSDGGEI 165
AP+ +I AL P RW IK +V R +A V F +LD++G I
Sbjct: 2 APSNLI--TALTPKNDRWRIKVKVI------RLWDAVNPTMVDEFYGIQMIVLDAEGNSI 53
Query: 166 RVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEED 225
V+ + + F I++ +Y + K + LKN +I
Sbjct: 54 HVSISKQLANHFRPKIKINSIYTFKNFKVMEHDK-YRVLKNNLKILFYH----------- 101
Query: 226 DSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNP-SVPILRKNGMETQRRILNLKDTS 284
D+I K+ + +DVIG++ + P +L KN ++ R+ N+++
Sbjct: 102 DTIVKETCLY--------------LDVIGLLSGMKPIEQRMLGKNT--SRERVCNMREIE 145
Query: 285 GR-----SVELTLWGDFCNKEGQKLQEMVD---VGFFPVLSVKSGKVNDFSGK-SIGTIP 335
V++TLWGD L MVD +G V V ++ S G
Sbjct: 146 LLLLEGEKVKITLWGDI-------LANMVDDDLLGKQTVFIATGLLVKEYEKLLSFGVTS 198
Query: 336 STQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEI----HKTVSQIKNEG 391
ST++F++ + + E+ + + I + + G E KT+ +I
Sbjct: 199 STEVFLDMEIPASMEILSRHN--AEKVLPTMIEVDASTQGTIEEQMFYNRKTLKEITELR 256
Query: 392 LGRSEKPDWV-TVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEID 450
++ +++ TV+A I IKS ++ Y +C +C + N + C+ C +E
Sbjct: 257 YSNIQQKEFICTVKAKIEEIKSRNWWYMSCD------KCFCGTRKESNVYICNSCGKEAV 310
Query: 451 ECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRV 510
RY++ +I D T T T F E E I G + + + Q D+ + IR
Sbjct: 311 NPKPRYVINLEISDHTTRTTCTIFNEEAERIFGHKSVSTMLEEQNGQIDM-IPDTIRQIC 369
Query: 511 FNQYLFRLKI 520
+FRLK+
Sbjct: 370 GRILIFRLKL 379
>gi|391329299|ref|XP_003739112.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like,
partial [Metaseiulus occidentalis]
Length = 214
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 83/181 (45%), Gaps = 5/181 (2%)
Query: 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
R + L Y G ++ RVT+K ++ ++ +GK+FSF L+ + I V
Sbjct: 38 TRFLKDVVLTRYGG--VLEGRVTSKTPIKEWSKNGKEGKLFSF-LMADETARISVIVSGD 94
Query: 173 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQ 232
D + I+V Y I+ KP +F+ +E E+ L S + E D IP+ Q
Sbjct: 95 KTDEVFSTIQVNHCYRITGFKPKPVNPHFSSTDHECEVTLSKISKIKEI--ERDDIPQTQ 152
Query: 233 FSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTL 292
I+ I + E N ++D+ I+ + P I ++G +++ L D S + V L L
Sbjct: 153 SLCSSIASILNIEKNCLIDLTAILFDLLPVQNITCRDGSIQKKQTALLVDDSKKIVSLDL 212
Query: 293 W 293
W
Sbjct: 213 W 213
>gi|413956258|gb|AFW88907.1| hypothetical protein ZEAMMB73_503872 [Zea mays]
Length = 553
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 78/391 (19%), Positives = 146/391 (37%), Gaps = 33/391 (8%)
Query: 112 PARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFN 171
P + + L+P I+ RV K + R N G + + L D G I
Sbjct: 30 PEFVKTLKELHPQSTNVVIRVRVIRKWEFRGATN-DGPLQYINLVLADEQGTPIHAEIAA 88
Query: 172 AVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQ 231
A+ +IE+ +VY + + + P++ F + N + I + + + P+
Sbjct: 89 ALAVDKGSLIEIEKVYELKRFRVTPSRNYFKPVDNNFMIQFTLYTQAKVVKDPPQVFPRY 148
Query: 232 QFSFRHISEIESAENNS--IVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVE 289
+ IE +N ++DV+G++ +NP P L T R + +++TS S++
Sbjct: 149 IYKLTCFENIEDNIDNRTYLIDVLGMLTQINP--PHLIGYNNSTIIRDIFIENTSDMSLK 206
Query: 290 LTLWG---------DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKS-IGTIPSTQL 339
+TLWG D N+ + ++ VGF F G+ + + ++
Sbjct: 207 ITLWGNQASSFSISDVYNQSNNQPIVILLVGFL---------AKRFKGQPYLSSTTASSW 257
Query: 340 FINPDFAEAHELREWFDSGG-KNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKP 398
+ NP EA + + + EI N KTV ++ N
Sbjct: 258 YFNPGIPEAQTYYNRLQTNDLQLIQPTAAEEEILLSQPPNLEQKTVEELLNIDPDMFPPE 317
Query: 399 DWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLL 458
+ +++ + Y +C +C+K +Q+ + C C + ++RY L
Sbjct: 318 GYRCTVTISRIVQNSKWWYPSC------SRCHKSSSQTSTGYHCTSCG--CTDINFRYKL 369
Query: 459 QAQIQDQTGLTWVTAFQESGEEILGCPAKEL 489
D T F +I+G P L
Sbjct: 370 SFIATDGTCEAEFFCFDSIARKIVGKPCDNL 400
>gi|196018182|ref|XP_002118759.1| hypothetical protein TRIADDRAFT_62772 [Trichoplax adhaerens]
gi|190578288|gb|EDV18754.1| hypothetical protein TRIADDRAFT_62772 [Trichoplax adhaerens]
Length = 218
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 38/45 (84%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLD 159
+ PI++L PYQ RW I+ RVT+K ++R+++N+RG+GK+FS DL+D
Sbjct: 172 VFPISSLTPYQNRWTIRTRVTSKSEIRKWSNSRGEGKLFSVDLID 216
>gi|413923515|gb|AFW63447.1| hypothetical protein ZEAMMB73_293789 [Zea mays]
Length = 520
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 81/386 (20%), Positives = 152/386 (39%), Gaps = 31/386 (8%)
Query: 117 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL--DSDGGEIRVTCFNAVV 174
PIA L+P AI+ R+ K + R A DG + +L+ D G I A+V
Sbjct: 5 PIAELDPKSTNAAIRVRIIRKWEFR---GATNDGPLRHVNLILADEQGTAIHAEIQAALV 61
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
D +I++ +VY + + + P++ + + N I + + + + P+ +
Sbjct: 62 DDKGSLIQIDKVYELKRFRVTPSRNYYKPVDNSMMIQFTLYTQAKVVEDPPPTFPRYAYK 121
Query: 235 FRHISEIESAENNS--IVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTL 292
I + +N ++DV+GI+ + S+ + N R I LKD + S ++TL
Sbjct: 122 LTSFENIGNNVDNKTYLIDVLGILTEIG-SLHHVGYNNSNIIRDIF-LKDINNTSTKVTL 179
Query: 293 WGDFC------NKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKS-IGTIPSTQLFINPDF 345
WG N + V V F L+ + F G++ + + + NPD
Sbjct: 180 WGHQASSFSVDNIYDDNDNKPVVVLFVGCLAKR------FKGEAYLSATAACTWYFNPDI 233
Query: 346 AEAH-ELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVR 404
EA + ++ + + +E+ A N KT+ ++ + +
Sbjct: 234 PEAQVYYSKLLNTKLQMIRPQATEKELQASQTLNIEDKTIEELLQLDPDMFPEHGFKCTV 293
Query: 405 AFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQD 464
++ + + +C +CNK +Q+ +QC CN E +RY L D
Sbjct: 294 TISRLVQDGRWWFPSC------IKCNKSSSQTSTGYQCTSCNGT--ETGFRYKLNFIATD 345
Query: 465 QTGLTWVTAFQESGEEILGCPAKELY 490
T F + I+G + L+
Sbjct: 346 GTSEAEFFCFDSIAKRIVGKSCQTLF 371
>gi|321460652|gb|EFX71693.1| hypothetical protein DAPPUDRAFT_111469 [Daphnia pulex]
Length = 302
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 84/180 (46%), Gaps = 5/180 (2%)
Query: 116 IPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVD 175
I + L+P RW I+ RV + R +GD +F F LLDS G ++V F D
Sbjct: 38 IDVNKLSPDLRRWKIRGRVCR---ISRLFPFKGDRNMFYFGLLDS-SGLLKVKAFGGDAD 93
Query: 176 RFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSF 235
++Y I+E G ++ I + A+ N ++E+ L S V+ E+DD+ P+ +
Sbjct: 94 KYYGIVEEGEMFSIEYARVSVAKNPNNIFPLKFEVILAKESEVERL-EQDDTFPRLKVVK 152
Query: 236 RHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGD 295
+ ++ + + D+ IV V + + + + + + G +V++TLW D
Sbjct: 153 YDLKKVRDLPHGTFFDIEVIVYKAGCVVDVRKGELRKLELEVFDASMKPGETVKVTLWND 212
>gi|215687058|dbj|BAG90904.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215694034|dbj|BAG89233.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 192
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 84/189 (44%), Gaps = 8/189 (4%)
Query: 118 IAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDL--LDSDGGEIRVTCFNAVVD 175
I+ L P I ARV+ R N+ D + DL LD G V + ++
Sbjct: 6 ISQLYPGDSDKKILARVSRLWHFRDLND---DTNILHTDLVLLDEVGNSTHVQMYRGAIE 62
Query: 176 RFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSF 235
+I G VY I ++K A + + + N++ I +T++ C + P FS
Sbjct: 63 VLKPLIHEGNVYYIESFTVKDANRTYRPVSNDFMILFSKWTTLEECIDIPADFPAITFSL 122
Query: 236 RHISEIESAENNSI--VDVIGIVISVNPSVPIL-RKNGMETQRRILNLKDTSGRSVELTL 292
EI S + +I VD++G++ ++ + + R ++ +R L + D S ++ +TL
Sbjct: 123 TPFQEIPSLVDKNIFYVDIMGVITEISSTSTVRPRSRDADSLKRTLQICDASNSTLPVTL 182
Query: 293 WGDFCNKEG 301
WGD E
Sbjct: 183 WGDRSTAEN 191
>gi|195499029|ref|XP_002096774.1| GE24867 [Drosophila yakuba]
gi|194182875|gb|EDW96486.1| GE24867 [Drosophila yakuba]
Length = 189
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 94/202 (46%), Gaps = 17/202 (8%)
Query: 157 LLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATS 216
LLD + GEI FN +V+ FY I+ G VY+ S ++ A++ N +++FL +
Sbjct: 3 LLD-ESGEITGVVFNNLVNVFYASIQTGLVYIFSGFEVRQAEQRLKVSDNPYQVFLLGNT 61
Query: 217 TVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRR 276
V+L D IP+++++F +S++ S + VD IGI V L R
Sbjct: 62 VVELSAS--DRIPREKYNFLPLSKVSSILDMEPVDAIGICSEVRE----LDNRAGYFIRE 115
Query: 277 ILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGK-SIGTIP 335
IL L D + V L LW K+ + D V+ VK + + + +
Sbjct: 116 IL-LVDHDYQCVMLNLW----EKQAVNFEGKPD----DVIVVKGARAQTHNNEIKLNAGW 166
Query: 336 STQLFINPDFAEAHELREWFDS 357
T + INPD EA + EW+D+
Sbjct: 167 YTNVQINPDNPEATSMLEWYDN 188
>gi|297736414|emb|CBI25137.3| unnamed protein product [Vitis vinifera]
Length = 115
Score = 65.5 bits (158), Expect = 7e-08, Method: Composition-based stats.
Identities = 34/109 (31%), Positives = 61/109 (55%)
Query: 448 EIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIR 507
E + +Y++ ++ D +G + F E E I GC A EL LK + ++ RF + ++
Sbjct: 2 EFESIRIQYIMVVKVSDDSGEACLALFNEQAERIFGCSADELDKLKSQEGEENRFQQKLK 61
Query: 508 SRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
++ +LFR+ + + Y +E+R IT V++++ESR LL+ ISK
Sbjct: 62 EAIWVPHLFRISVAQHEYMNEKRQWITARAVVAVDFAAESRLLLEEISK 110
>gi|242052139|ref|XP_002455215.1| hypothetical protein SORBIDRAFT_03g006365 [Sorghum bicolor]
gi|241927190|gb|EES00335.1| hypothetical protein SORBIDRAFT_03g006365 [Sorghum bicolor]
Length = 369
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 80/359 (22%), Positives = 155/359 (43%), Gaps = 35/359 (9%)
Query: 150 GKVFSFDLLDSDG-GEIRVTCFNAV-VDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNE 207
G+V+ L DG G + C ++R + G+VY +S ++ + N
Sbjct: 18 GEVYGLHCLLIDGEGVVMQACARPWDMERLKHQLVEGKVYALSNFGVREKLDKYMACSNG 77
Query: 208 WEIFLEATSTVDLCTEE-DDSIPKQQFSFRHISEIESAENNS--IVDVIGIVISVNPSVP 264
I + A + V+ T+ SIP F F ++ S N+ DVIG ++S+
Sbjct: 78 LVISMGAQTVVNEITDHAGSSIPLHSFEFVDFGDLPSRNNDRSLFTDVIGQIVSIEDEGW 137
Query: 265 ILRKNGMET-QRRILNLKDTSGRSVELTLWGDFCN--------KEGQKLQEMVDVGFFPV 315
+ R ++L+D G+ + +TL+GD + K+GQK+ PV
Sbjct: 138 TWKWGAWRNISFRNIHLRDLGGKQLNVTLFGDLGSNFDAEQVFKQGQKV---------PV 188
Query: 316 LSVKSGK-VNDFSGKS-IGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAA 373
+++ +G V + G+ + + +++ +++ D E + R D K + +
Sbjct: 189 VAIFAGMLVEHYKGQLFLRSTSASKYYLDLDVEEVQKFRASLDGPYKPIDRLPCRLQKPL 248
Query: 374 GGAKN-EIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSD-SFCYTACPLMIGDRQCNK 431
+ + +T+ Q++N ++ W+ RA + I S+ + Y +C C+
Sbjct: 249 NPTELIDSWRTIKQLRNLNSDELQQRTWLC-RATLKGIDSNKGWSYQSC------FHCHH 301
Query: 432 KVTQSGNRWQCDR-CNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKEL 489
V+ G+++ C+ C RY L A I+D+T V F ++++G PA+EL
Sbjct: 302 SVSWDGSKFLCNYGCPNNKLSVRVRYKLDAVIKDETDSMNVMIFDGPAQKLVGVPAEEL 360
>gi|38346787|emb|CAE02205.2| OSJNBa0095H06.12 [Oryza sativa Japonica Group]
Length = 1724
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 120/282 (42%), Gaps = 25/282 (8%)
Query: 128 WAIKARVTAKGDLRRYNNARGDGKVFSFDLL--DSDGGEIRVTCFNAVVDRFYEIIEVGR 185
W I+AR+ D Y D DL+ D G + D+F +++ +
Sbjct: 1261 WKIRARIARMWD---YTGTANDVPPMHVDLVLVDEKGNAMYAEIPGVEADKFRPLLQESK 1317
Query: 186 VYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIES-- 243
VY SK + P++ + N++ I L + V+ E P F+ S++
Sbjct: 1318 VYTFSKFLVLPSKPAYKPFPNKYMIKLTPWTNVEQVNEVPADFPSHVFNLVQFSDLSQRV 1377
Query: 244 AENNSIVDVIGIVISVNPSVPI-LRKNGMETQRRILNLKDTSGRSVELTLWG----DFCN 298
DVIG++I V+ + + +T +R++ L+D + V+L LWG DF
Sbjct: 1378 GMQEYFTDVIGMIIGVSKLAYVRMASKTSDTPKRVIALRDLANCEVKLVLWGEHALDFDA 1437
Query: 299 KEGQKL-QEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDS 357
+ Q+ V VG F G + K++ + + ++N D E+ ++FDS
Sbjct: 1438 DAVHSVGQDNVVVGIF------VGTLMKAYNKTLSGGSACKWYLNEDIP---EINQFFDS 1488
Query: 358 GGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPD 399
G +A + + I+AG + +Q++++ + +K D
Sbjct: 1489 LGDSAPKI---QWISAGAKSFGSSQRPAQLEHKSVADLKKID 1527
>gi|242041189|ref|XP_002467989.1| hypothetical protein SORBIDRAFT_01g037705 [Sorghum bicolor]
gi|241921843|gb|EER94987.1| hypothetical protein SORBIDRAFT_01g037705 [Sorghum bicolor]
Length = 122
Score = 65.1 bits (157), Expect = 9e-08, Method: Composition-based stats.
Identities = 37/114 (32%), Positives = 61/114 (53%), Gaps = 8/114 (7%)
Query: 384 VSQIKNEGLGRSEKPDWVTVRAFITFIKSDS-FCYTACPLMIGDRQCNKKVTQS-GNRWQ 441
+S I ++ EKP + ++ A I+ IK + Y AC + C KVT++ G+ +
Sbjct: 15 LSHITSDPAMGQEKPVFFSLNAIISHIKPEQHMWYRAC------KTCCNKVTEAFGSGYW 68
Query: 442 CDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYE 495
+RCN+ EC RY++ ++ D G WV+ F E E+I+G A EL ++ E
Sbjct: 69 SERCNKNASECSLRYIMVIKVSDPNGEAWVSVFNEHAEKIIGYSADELDRIRKE 122
>gi|357498253|ref|XP_003619415.1| Coiled-coil domain-containing protein [Medicago truncatula]
gi|355494430|gb|AES75633.1| Coiled-coil domain-containing protein [Medicago truncatula]
Length = 705
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 110/217 (50%), Gaps = 14/217 (6%)
Query: 157 LLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATS 216
L+D +G +I T ++ F + G+VY +S ++ + + +++ + +
Sbjct: 42 LIDQNGVKIHATIPKQLMYLFQHKLIEGKVYKLSNFTVLLNSGAYRTTHHTYKLIFQMKT 101
Query: 217 TVDLCTEEDDS-IPKQQFSFRHISEIESAENNS--IVDVIGIVISVNPSVPILRKNGMET 273
V+ + + S IP + IS+I S + +VDVIG++ ++ +R +G T
Sbjct: 102 KVEESHDYEISLIPNHGLTLTDISQITSRTQDYEYLVDVIGLMTGISAEREFVR-DGKLT 160
Query: 274 QRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGK-SIG 332
+ ++ L D SG+ E TL+G++ ++ + + + V+ PV+ ++ KV F GK SI
Sbjct: 161 KILVIELTDHSGK-CECTLFGNYVDELHKLMSKAVEGS--PVIVIQFAKVKIFRGKASIQ 217
Query: 333 TI--PSTQLFINPDFAEAHELRE----WFDSGGKNAA 363
+ +T++++NP F EA + +E WF +N A
Sbjct: 218 NVVGSTTRIYLNPSFPEALKFKEGKEVWFTFSKQNEA 254
>gi|440292825|gb|ELP86002.1| hypothetical protein EIN_234190 [Entamoeba invadens IP1]
Length = 344
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 90/183 (49%), Gaps = 11/183 (6%)
Query: 114 RIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAV 173
+I P A + IK RV +K ++ R G F L D++ E+ V C++
Sbjct: 139 KITPFAVITTMTNNVTIKGRVISKSNITR----TVTGTKLCFLLQDANENEMTVNCYDNE 194
Query: 174 VDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEE-DDSIPKQQ 232
++ +++ +VG VY I K + + HL+ E EI + T T ++ T+E ++ IP +
Sbjct: 195 CEQAFDMFQVGSVYFIYCRQFKEIKSSI-HLR-EKEIDVNMTYTCEIPTQESENDIPSKG 252
Query: 233 FSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTL 292
IS +++A + DV G+VI +N + + G + R IL + D S +E+
Sbjct: 253 L-ITTISYLKNATVEKLYDVSGVVIKINKEDNVTK--GGKVYRTIL-VVDQSNYIIEIKF 308
Query: 293 WGD 295
WGD
Sbjct: 309 WGD 311
>gi|302823631|ref|XP_002993466.1| hypothetical protein SELMODRAFT_431543 [Selaginella moellendorffii]
gi|300138703|gb|EFJ05461.1| hypothetical protein SELMODRAFT_431543 [Selaginella moellendorffii]
Length = 148
Score = 64.3 bits (155), Expect = 2e-07, Method: Composition-based stats.
Identities = 51/198 (25%), Positives = 86/198 (43%), Gaps = 53/198 (26%)
Query: 290 LTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAH 349
+ LW EG +++E G P++ VK +++D++G DF
Sbjct: 1 MCLWDSEAEDEGSEIKEKPGQGERPIVCVKGSQISDYNGN--------------DF---- 42
Query: 350 ELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITF 409
W++ +SI+ +++ A I + V+V+ F
Sbjct: 43 ----WYNE------MLSINLKVSEFSA---IFHVI----------------VSVKEF--- 70
Query: 410 IKSDSFCYTACPLMIGDRQCNKKVTQ-SGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGL 468
++ F Y AC ++ RQC KKVTQ S + WQC+ C+ + + ++Y L I D TG
Sbjct: 71 -QTGDFYYPACMKVVNGRQCGKKVTQVSESMWQCNSCDTDFGDIHFKYALHLCILDSTGH 129
Query: 469 TWVTAFQESGEEILGCPA 486
W AF ++ EI+ PA
Sbjct: 130 IWAVAFDDA-NEIVEMPA 146
>gi|302776414|ref|XP_002971372.1| hypothetical protein SELMODRAFT_412040 [Selaginella moellendorffii]
gi|300161354|gb|EFJ27970.1| hypothetical protein SELMODRAFT_412040 [Selaginella moellendorffii]
Length = 132
Score = 64.3 bits (155), Expect = 2e-07, Method: Composition-based stats.
Identities = 38/106 (35%), Positives = 55/106 (51%), Gaps = 2/106 (1%)
Query: 382 KTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQ-SGNRW 440
KTVS++ + L SE V + ++ F Y AC ++ RQC KKVTQ S + W
Sbjct: 26 KTVSEMLSINLKVSEFSAIFRVIVLVKEFQTGDFYYPACMKVVNGRQCAKKVTQVSESMW 85
Query: 441 QCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPA 486
QC+ C+ + + +Y L I D TG W AF ++ EI+ PA
Sbjct: 86 QCNSCDTDSGDIHLKYALHLCILDSTGHIWAVAFDDA-NEIVEMPA 130
>gi|357517787|ref|XP_003629182.1| ATP-dependent DNA helicase PIF1 [Medicago truncatula]
gi|355523204|gb|AET03658.1| ATP-dependent DNA helicase PIF1 [Medicago truncatula]
Length = 604
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 84/429 (19%), Positives = 169/429 (39%), Gaps = 50/429 (11%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
I P++A+ + ++ RV + +N + D + LLD G+I++T ++
Sbjct: 5 ITPVSAIVAGRINIRLRVRVVHVWTIPEFNRPQEDSAMHLL-LLDEKFGKIQLTVKKHLI 63
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEI-FLEATSTVDLCTEEDDSIPKQQF 233
++E G Y++ + + ++W + FL T + E +IP+ F
Sbjct: 64 PMIKSVVEEGAAYMLDNVLVTRNDPKYGTTNHKWRLDFLHKTKFNKI---EALNIPQNHF 120
Query: 234 SFRHISEI-ESAENNSIVDVIGIVISVNPSVPILRK---NGMETQRRILNLKDTSGRSVE 289
F +EI +S I+DVIG V+ + +++ NG ++ L L+D+ R +
Sbjct: 121 DFVSFAEILDSDREERIIDVIGHVVERD----VMKDKEVNGRTSKLLDLTLQDSESRRIH 176
Query: 290 LTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPST----------QL 339
+LW + + FF S + + + ST +L
Sbjct: 177 CSLWATYAERM---------TSFFATHEANSPVIVIMQQCKLKSYCSTMGVSNAFYGIKL 227
Query: 340 FINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAK------NEIHKTVSQIKNEGLG 393
++ D AE E + N V +++ I+ A +++ ++ + L
Sbjct: 228 IVDGDIAEVSEYKSKI-----NGEEVQVTQGISQSSASSIVPLVDDMLQSHRMTIEDLLD 282
Query: 394 RSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECD 453
SEK + + + K ++ Y AC +C +V R C +CN +
Sbjct: 283 ASEKCNGIVLATVCDIEKEFNWYYQACT------KCAGRVKTIAGRLFCPKCNTGRNAVP 336
Query: 454 YRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQ 513
R+ + Q+ D TG T F + +G ++L + + ++ F + Q
Sbjct: 337 -RFKVHLQVMDNTGSTSFILFDRNVSNYVGKSVQDLIQQQAQQKNADDFPAEFDTFYGKQ 395
Query: 514 YLFRLKIKE 522
LF++++ E
Sbjct: 396 MLFKVEVAE 404
>gi|297852032|ref|XP_002893897.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297339739|gb|EFH70156.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 492
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 83/393 (21%), Positives = 155/393 (39%), Gaps = 45/393 (11%)
Query: 121 LNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEI 180
LNP + W ++ +V RR N+ G+ F L D +G I T + + +F +
Sbjct: 13 LNPSKYEWVVETKVLCSW-TRRLENS---GRRLVFVLADREGSRIHATVEDKNIKKFDSV 68
Query: 181 IEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISE 240
++ G V ++ L ++ ++I T+ V C + +P++ F
Sbjct: 69 LKEGDVVTLNPFKLIKYSGDYKSNSLSFKILFYRTTQVKPCDDFPKEVPEKYFVEFGDVL 128
Query: 241 IESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKE 300
S + VDVIG +++V P + ++ G T + + L+D + TL DF K+
Sbjct: 129 NGSRDTRVFVDVIGQIVNVGP-IEDIKIRGKSTPKLDVELRDRGNVRLICTLLADFA-KQ 186
Query: 301 GQKLQEMVDVGFFPVLSVKSGKVNDFSGKSI--GTIPSTQLFINPDFAEAHELREWFDSG 358
+ E V ++ +V ++ G + +T++ ++P E R +
Sbjct: 187 VKVYTEANPAAV--VCVIRCAQVKEWKGNWTISNAMGATRVLLDPPGVFVDEFRSGLPTD 244
Query: 359 GK-----------NAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFI 407
G +TVSI + K + V ++ EG+ VT+
Sbjct: 245 GVVLTNHDNSELFAGSTVSIRDQFLVKNHKRTVRDIVEALE-EGMC-------VTMVTVG 296
Query: 408 TFIKSDSFCYTACPLMIGDRQCNKKVT-------QSGN--RWQCDRCNQEIDECDYRYLL 458
+ ++ + Y +C + CNK V GN + C C++++ +RY L
Sbjct: 297 SVERTSKWYYVSC------KMCNKSVEPYPENSGDDGNPPLYYCGICDKDVSAVVFRYRL 350
Query: 459 QAQIQDQTGL-TWVTAFQESGEEILGCPAKELY 490
++ D T F G +L A+ELY
Sbjct: 351 VLEVSDATNYKARFLLFDAMGSTLLRRTAQELY 383
>gi|302825407|ref|XP_002994322.1| hypothetical protein SELMODRAFT_432246 [Selaginella moellendorffii]
gi|300137797|gb|EFJ04619.1| hypothetical protein SELMODRAFT_432246 [Selaginella moellendorffii]
Length = 105
Score = 63.9 bits (154), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 6/87 (6%)
Query: 401 VTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQ-SGNRWQCDRCNQEIDECDYRYLLQ 459
++V+ F ++ F Y AC ++ RQC KKVTQ S + WQC+ C+ + + ++Y LQ
Sbjct: 22 ISVKEF----QTGDFYYPACMKVVNGRQCGKKVTQVSESMWQCNSCDTDSGDIHFKYALQ 77
Query: 460 AQIQDQTGLTWVTAFQESGEEILGCPA 486
I D TG W AF ++ EI+ PA
Sbjct: 78 LCILDSTGHIWAVAFDDT-NEIVEMPA 103
>gi|55168169|gb|AAV44036.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 820
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 99/430 (23%), Positives = 171/430 (39%), Gaps = 72/430 (16%)
Query: 111 APARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFD-----LLDSDGGEI 165
AP+ +I L P RW IK +V R +A V F +LD++G I
Sbjct: 2 APSNLI--TELTPKNDRWRIKVKVI------RLWDAVNPTMVDEFYGIQMIVLDAEGNSI 53
Query: 166 RVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEED 225
V+ + + F I++ +Y + K + LKN +I
Sbjct: 54 HVSISKQLANHFRPKIKINSIYTFKNFKVMEHDK-YRVLKNNLKILFYH----------- 101
Query: 226 DSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNP-SVPILRKNGMETQRRILNLKDTS 284
D+I K+ + +DVIG++ + P +L KN ++ R+ N+++
Sbjct: 102 DTIVKETCLY--------------LDVIGLLSGMKPIEQRMLGKNT--SRERVCNMREIE 145
Query: 285 GR-----SVELTLWGDFCNKEGQKLQEMVD---VGFFPVLSVKSGKVNDFSGK-SIGTIP 335
V++TLWGD L MVD +G V V ++ S G
Sbjct: 146 LLLLEGEKVKITLWGDI-------LANMVDDDLLGKQTVFIATGLLVKEYEKLLSFGVTS 198
Query: 336 STQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEI----HKTVSQIKNEG 391
ST++F++ + + E+ + + I + + G E KT+ +I
Sbjct: 199 STEVFLDMEIPASMEILSRHN--AEKVLPTMIEVDASTQGTIEEQMFYNRKTLKEITELR 256
Query: 392 LGRSEKPDWV-TVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEID 450
++ +++ TV+A I IKS ++ Y +C +C + N + C+ C +E
Sbjct: 257 YSNIQQKEFICTVKAKIEEIKSRNWWYMSCD------KCFCGTRKESNVYICNSCGKEAV 310
Query: 451 ECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRV 510
RY++ +I D T T T F E E I G + + + Q D+ + IR
Sbjct: 311 NPKPRYVINLEISDHTTRTTCTIFNEEAERIFGHKSVSTMLEEQNGQIDM-IPDTIRQIC 369
Query: 511 FNQYLFRLKI 520
+FRLK+
Sbjct: 370 GRILIFRLKL 379
>gi|391344163|ref|XP_003746372.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Metaseiulus occidentalis]
Length = 198
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 85/192 (44%), Gaps = 6/192 (3%)
Query: 136 AKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLK 195
K D++ + DG +FSF L D + +I V + +E I+ G Y I +
Sbjct: 2 TKSDMKTFKKDNTDGNLFSFTLAD-NTADINVLVTGELGHEMFEKIQTGHCYQICDFKQR 60
Query: 196 PAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGI 255
P+ + + E+ L S V + D +PK+ + I++I E ++D+ I
Sbjct: 61 PSHPLYKVTNHTCELLLGKISEVRQI--DGDHLPKKVEKYFTINQIRDTEVGKMIDLQAI 118
Query: 256 VISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPV 315
+ V K G R+ + L D S + V LTLWG +K + ++VD F
Sbjct: 119 IYDVGEIHSYSGKAGDIRNRQNILLVDDSRKIVSLTLWGSLIHKVDDREGQVVD---FQK 175
Query: 316 LSVKSGKVNDFS 327
LSVKS K+ S
Sbjct: 176 LSVKSSKLGRIS 187
>gi|449688707|ref|XP_004211822.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like,
partial [Hydra magnipapillata]
Length = 99
Score = 63.5 bits (153), Expect = 3e-07, Method: Composition-based stats.
Identities = 36/95 (37%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 460 AQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLK 519
A I D +G W+TAFQES E IL A+++ LK D +F I F ++F+++
Sbjct: 1 ANIADFSGNQWITAFQESAEAILCVSAEQIGHLKD--SDVSQFDMIFSEACFKPFVFKVR 58
Query: 520 IKEELYGDEQRVKITVIRADQVNYSSESRYLLDLI 554
K E Y DE+++K + + A VN+ E + LLD I
Sbjct: 59 AKMETYQDERKLKCSAMSAAPVNFKQECKRLLDEI 93
>gi|77555321|gb|ABA98117.1| hypothetical protein LOC_Os12g26850 [Oryza sativa Japonica Group]
Length = 1201
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 106/242 (43%), Gaps = 28/242 (11%)
Query: 130 IKARVTAKGDLRRYNNARGDGKVFSFDL--LDSDGGEIRVTCFNAVVDRFYEIIEVGRVY 187
IKARV+ D N+ D K+ DL LD G I + V+ +++ G+VY
Sbjct: 703 IKARVSRLWDFHDLND---DRKIVHTDLVLLDETGNSIHAQMYQHVIVNLKPLLQEGKVY 759
Query: 188 LISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENN 247
I +++ A + + + + I +T++ C + P FS ++ S +
Sbjct: 760 YIDSFTVRYANRTYRPVAHSQMILFTKWTTLEECVDVPADFPAITFSLTPFGDVPSLVDK 819
Query: 248 SI--VDVIGIVISVNPSVPIL-RKNGMETQRRILNLKDTSGRSVELTLWGD--------- 295
+I VD++G++ + + + + ++ +R L + D S ++ LTLWG+
Sbjct: 820 NIFYVDIMGVITEIGTTSTVRPQSRNTDSLKRTLQICDASNSTLPLTLWGERATAFDAEN 879
Query: 296 FCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPST--QLFINPDFAEAHELRE 353
N ++ Q +V VG V ++ G + S+ + +IN + E EL+E
Sbjct: 880 IYNAGQRQPQVVVFVGTL---------VKNYKGLGLTLTGSSPCKWYINLEIPEVVELKE 930
Query: 354 WF 355
+
Sbjct: 931 RY 932
>gi|222628302|gb|EEE60434.1| hypothetical protein OsJ_13642 [Oryza sativa Japonica Group]
Length = 479
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 120/282 (42%), Gaps = 25/282 (8%)
Query: 128 WAIKARVTAKGDLRRYNNARGDGKVFSFDLL--DSDGGEIRVTCFNAVVDRFYEIIEVGR 185
W I+AR+ D Y D DL+ D G + D+F +++ +
Sbjct: 16 WKIRARIARMWD---YTGTANDVPPMHVDLVLVDEKGNAMYAEIPGVEADKFRPLLQESK 72
Query: 186 VYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIES-- 243
VY SK + P++ + N++ I L + V+ E P F+ S++
Sbjct: 73 VYTFSKFLVLPSKPAYKPFPNKYMIKLTPWTNVEQVNEVPADFPSHVFNLVQFSDLSQRV 132
Query: 244 AENNSIVDVIGIVISVNPSVPI-LRKNGMETQRRILNLKDTSGRSVELTLWG----DFCN 298
DVIG++I V+ + + +T +R++ L+D + V+L LWG DF
Sbjct: 133 GMQEYFTDVIGMIIGVSKLAYVRMASKTSDTPKRVIALRDLANCEVKLVLWGEHALDFDA 192
Query: 299 KEGQKL-QEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDS 357
+ Q+ V VG F G + K++ + + ++N D E+ ++FDS
Sbjct: 193 DAVHSVGQDNVVVGIF------VGTLMKAYNKTLSGGSACKWYLNEDIP---EINQFFDS 243
Query: 358 GGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPD 399
G +A + + I+AG + +Q++++ + +K D
Sbjct: 244 LGDSAPKI---QWISAGAKSFGSSQRPAQLEHKSVADLKKID 282
>gi|4895168|gb|AAD32756.1| putative replication protein A1 [Arabidopsis thaliana]
Length = 458
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 82/360 (22%), Positives = 139/360 (38%), Gaps = 41/360 (11%)
Query: 150 GKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWE 209
G+ F L D G +I + ++RF +I G I L A F + ++
Sbjct: 4 GETFDMVLSDVRGKKIHASVKREHLNRFERLIVPGEWRAIENFGLTYATGQFKATDHRYK 63
Query: 210 IFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKN 269
+ A + V DS +F + N ++DV+G +++V + + +
Sbjct: 64 MGFMAQTRVVRIDPLSDSYFLSLTAFNDVLN-GGLNQNYLIDVVGQIVNVG-EMETIDVH 121
Query: 270 GMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSG- 328
T++ L+D + TLWG F + + G + V+ K+ +
Sbjct: 122 NQPTKKIDFELRDQKDERLPCTLWGSFAEQVFTACEAAN--GEMIICLVRFAKLKTYKDV 179
Query: 329 KSIG-TIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISR--------EIAAGGAKNE 379
+SI ++Q+ INPD E E + D+ K+ +++ E G +
Sbjct: 180 RSISNAFNTSQILINPDLPEILEFK---DALPKDCLALTLIESKPKSKIDEFPTGDFYLQ 236
Query: 380 I-HKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSD---SFCYTACPLMIGDRQCNKKVTQ 435
KT+ ++ SE D V+ T D S+ Y C ++CNKKVT+
Sbjct: 237 FAKKTIKEV-------SEMFDVGRVKVLCTIYDIDRDWSWYYIVC------KKCNKKVTK 283
Query: 436 ------SGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKEL 489
W C+ C I RY L ++ D +G + F EI+GCPA L
Sbjct: 284 VVMTSLKAQLW-CETCRAPITNVLARYKLHVKVMDSSGEMKLMLFDAMSSEIVGCPANNL 342
>gi|84490268|ref|YP_448500.1| replication factor A [Methanosphaera stadtmanae DSM 3091]
gi|84373587|gb|ABC57857.1| predicted ssDNA-binding protein [Methanosphaera stadtmanae DSM
3091]
Length = 793
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 91/430 (21%), Positives = 182/430 (42%), Gaps = 85/430 (19%)
Query: 89 TVQPPYQPPPNFRNHGPILKNEAPARIIPIAALNPYQGRWA-IKARVTAKGDLRRYNNAR 147
T+ P R ++ +I + LN +GR + R+ D R + R
Sbjct: 388 TINPELDTK--LREKLELVDTIGIVKIENVLDLNEDEGREVDVVGRIITTNDTREF--ER 443
Query: 148 GDG---KVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIE-VGRVYLISKGSLKPAQKNFNH 203
GDG ++ S +L D + G +R + ++ VD I E +G I + Q
Sbjct: 444 GDGSKGQIKSIELAD-ETGIVRTSLWDEKVD----ITEKLGDAIKIENARTRIGQ----- 493
Query: 204 LKNEWEIFLEATSTVDLCTEED-------DSIPKQQFSFRHISEIESAENNSIVDVIGIV 256
+ E+ + +S + T+E+ ++I + +++ R IS++E E N+ + V +
Sbjct: 494 --GQMELSVGKSSRITTPTDEEIVNLPSYENIEQDRYNDRTISQLEENETNTKLRVR--I 549
Query: 257 ISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVL 316
+++N R +G + + R + + D +G ++++LW D ++ F
Sbjct: 550 LNINEINTFTRTDGRDGRVRSIYVADETG-EIQVSLWDDDT-----------EIKF---- 593
Query: 317 SVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAH-ELREWFDSGGKNAATVSISREIAAGG 375
T S + NP+ + +LR G N +T+ +R+ A
Sbjct: 594 ----------------TKGSAIIIENPNITRQNTKLR--LSIG--NGSTIRAARQEEA-- 631
Query: 376 AKNEIHKTVSQIKNEGLGR------SEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQC 429
E ++++I+N+ E + ++ I+ I S+ YT CP C
Sbjct: 632 ---EKMLSLTEIENKLYVEKYIEDIEEDDQHIKIKGTISEINSEKIIYTMCP------NC 682
Query: 430 NKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKEL 489
N +TQ N + C+ C ++I++ +Y ++ +QD+TG T F++ EE++ +++
Sbjct: 683 NIGITQDENGYICNECGEKIEKPNYLMIISTTLQDETGTVQATFFRKDAEELISTTTEKV 742
Query: 490 YMLKYELQDD 499
+ YE D
Sbjct: 743 VAI-YEQTGD 751
>gi|297613121|ref|NP_001066722.2| Os12g0454300 [Oryza sativa Japonica Group]
gi|255670281|dbj|BAF29741.2| Os12g0454300 [Oryza sativa Japonica Group]
Length = 1051
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 106/242 (43%), Gaps = 28/242 (11%)
Query: 130 IKARVTAKGDLRRYNNARGDGKVFSFDL--LDSDGGEIRVTCFNAVVDRFYEIIEVGRVY 187
IKARV+ D N+ D K+ DL LD G I + V+ +++ G+VY
Sbjct: 553 IKARVSRLWDFHDLND---DRKIVHTDLVLLDETGNSIHAQMYQHVIVNLKPLLQEGKVY 609
Query: 188 LISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENN 247
I +++ A + + + + I +T++ C + P FS ++ S +
Sbjct: 610 YIDSFTVRYANRTYRPVAHSQMILFTKWTTLEECVDVPADFPAITFSLTPFGDVPSLVDK 669
Query: 248 SI--VDVIGIVISVNPSVPIL-RKNGMETQRRILNLKDTSGRSVELTLWGD--------- 295
+I VD++G++ + + + + ++ +R L + D S ++ LTLWG+
Sbjct: 670 NIFYVDIMGVITEIGTTSTVRPQSRNTDSLKRTLQICDASNSTLPLTLWGERATAFDAEN 729
Query: 296 FCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPST--QLFINPDFAEAHELRE 353
N ++ Q +V VG V ++ G + S+ + +IN + E EL+E
Sbjct: 730 IYNAGQRQPQVVVFVGTL---------VKNYKGLGLTLTGSSPCKWYINLEIPEVVELKE 780
Query: 354 WF 355
+
Sbjct: 781 RY 782
>gi|391338168|ref|XP_003743433.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Metaseiulus occidentalis]
Length = 301
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 115/248 (46%), Gaps = 15/248 (6%)
Query: 111 APARII-PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDG-GEIRVT 168
+PA+ + + L P + + R+ +KG +R + G++FSF + SDG +I+
Sbjct: 50 SPAKKVKSLGDLTPGKIGGIVNGRIESKGTIRTWKKDNEQGQLFSFVM--SDGSADIQAV 107
Query: 169 CFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSI 228
+ +++ I VG+ Y I+ +K +N + E+ L T + + I
Sbjct: 108 VSGDMCTEYHDRITVGQCYQITAFKVKETNPAYNPTNHPCELHL--TKISKMVPIQGSHI 165
Query: 229 PKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSV 288
PK S ++EI + N +V+V IV V I ++G+ ++ + L D + + +
Sbjct: 166 PKSIVSRTTLAEIAKQDANKVVNVEAIVYEVGKPQSISCRDGITRMKQSVLLVDETLKII 225
Query: 289 ELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKS-IGTIPSTQLFINPDFAE 347
L LW + +QE+ + VL V++ +V +++GK + ++ T + P
Sbjct: 226 SLGLW-------AEAVQELDGMESNCVL-VRNLQVKEYAGKKQLNSMSGTVVDKEPASET 277
Query: 348 AHELREWF 355
A +R W+
Sbjct: 278 AKSMRLWW 285
>gi|356541339|ref|XP_003539135.1| PREDICTED: uncharacterized protein LOC100796376 [Glycine max]
Length = 452
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/42 (61%), Positives = 33/42 (78%)
Query: 147 RGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYL 188
+G KVFSFD++DSDGG+I TCFN V D+FY +IE G+V L
Sbjct: 297 KGYKKVFSFDVVDSDGGQIGATCFNVVADQFYNVIEAGKVSL 338
>gi|297795577|ref|XP_002865673.1| hypothetical protein ARALYDRAFT_917801 [Arabidopsis lyrata subsp.
lyrata]
gi|297311508|gb|EFH41932.1| hypothetical protein ARALYDRAFT_917801 [Arabidopsis lyrata subsp.
lyrata]
Length = 496
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 91/428 (21%), Positives = 170/428 (39%), Gaps = 50/428 (11%)
Query: 118 IAALNPYQGRWAIKARVTAKGDLRRYNNARGD-GKVFSFDLLDSDGGEIRVTCFNAVVDR 176
I +NP + IK + LR + + D G L+D G I T + + +
Sbjct: 14 IDDINPIHDQNKIKVLI-----LRLWKAYQRDAGNTIEMVLVDEKGSRIHATVEDKNIKK 68
Query: 177 FYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQF-SF 235
F +++ G V ++ L ++ ++I T+ V C + +P++ F F
Sbjct: 69 FDSVLKEGDVVTLNPFKLIKYSGDYKSNSLSFKILFYRTTQVKPCDDFPKEVPEKYFVEF 128
Query: 236 RHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGD 295
+ S + VDVIG +++V P + ++ G T + + L+D + TLW D
Sbjct: 129 GDVLN-GSRDTRVFVDVIGQIVNVGP-IEDIKIRGKSTPKLDIELRDRGNVRLICTLWAD 186
Query: 296 FCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSI--GTIPSTQLFINPDFAEAHELRE 353
F K+ + E V ++ +V ++ G + +T++ ++P E R
Sbjct: 187 FA-KQVKVYTEANPAAV--VCVIRCAQVKEWKGNWTISNAMGATRVLLDPPGVFVDEFRS 243
Query: 354 WFDSGGK-----------NAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVT 402
+ G +TVSI + K + V ++ EG+ VT
Sbjct: 244 GLPTDGVVLTNHDNSELFAGSTVSIRDQFLVKNHKRTVRDIVEALE-EGM-------CVT 295
Query: 403 VRAFITFIKSDSFCYTACPLMIGDRQCNKKV----TQSGNR-----WQCDRCNQEIDECD 453
+ + ++ + Y +C + CNK V SG+ + C C++++
Sbjct: 296 MVTVGSVERTSKWYYVSC------KMCNKSVEPYPENSGDDGKPPLYYCGVCDKDVSAVV 349
Query: 454 YRYLLQAQIQDQTGL-TWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFN 512
+RY L ++ D T F G +L A+ELY E + E I + V
Sbjct: 350 FRYRLVLEVSDATNYKARFLLFDAMGSTLLRRTAQELYNAVSENDPSILPSE-IGALVGR 408
Query: 513 QYLFRLKI 520
++LF++ I
Sbjct: 409 RFLFKVSI 416
>gi|402223354|gb|EJU03419.1| hypothetical protein DACRYDRAFT_106579 [Dacryopinax sp. DJM-731
SS1]
Length = 326
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 106/255 (41%), Gaps = 31/255 (12%)
Query: 282 DTSGRSVELTLWGD----FCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPST 337
D G V +T+W F K GQ VL V + V G ++ + T
Sbjct: 31 DKEGHVVRVTMWNSRAKIFSGKHGQ------------VLHVMNSVVEHRGGVTLNSSEKT 78
Query: 338 QLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKN-----EIHK--TVSQIKNE 390
+ +NP EA EL++WF G AA IS + G E+ K T +Q++
Sbjct: 79 EFPLNPKIEEADELKQWFTDGFDEAALKHISCGYSKEGGLTSTTLEELPKVLTKAQVRAS 138
Query: 391 GLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEID 450
LG + D+ + I+ + + Y +C G + C + + + + D
Sbjct: 139 RLGHGDCIDYFNMVENISGFQ-EGIMYQSC----GFQGCRESLEKHKGDCPVKEHTPQPD 193
Query: 451 ECDYRYLLQAQI-QDQTGLTWVTAFQESGEEILGCPAKELYMLKY--ELQDDVRFGEIIR 507
E Y+Y + +D+ + +T F +G I+G PA E+Y ++ Q + EII
Sbjct: 194 EKQYKYKIGFTTGEDENKVMLLTVFSPAGTMIIGAPATEMYKMEATPNTQYMKKLEEIIT 253
Query: 508 SRVFNQYLFRLKIKE 522
S F++ L R+ +
Sbjct: 254 SGTFHKLLVRVSTRH 268
>gi|297837861|ref|XP_002886812.1| hypothetical protein ARALYDRAFT_893877 [Arabidopsis lyrata subsp.
lyrata]
gi|297852516|ref|XP_002894139.1| hypothetical protein ARALYDRAFT_337008 [Arabidopsis lyrata subsp.
lyrata]
gi|297332653|gb|EFH63071.1| hypothetical protein ARALYDRAFT_893877 [Arabidopsis lyrata subsp.
lyrata]
gi|297339981|gb|EFH70398.1| hypothetical protein ARALYDRAFT_337008 [Arabidopsis lyrata subsp.
lyrata]
Length = 496
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 91/428 (21%), Positives = 170/428 (39%), Gaps = 50/428 (11%)
Query: 118 IAALNPYQGRWAIKARVTAKGDLRRYNNARGD-GKVFSFDLLDSDGGEIRVTCFNAVVDR 176
I +NP + IK + LR + + D G L+D G I T + + +
Sbjct: 14 IDDINPIHDQNKIKVLI-----LRLWKAYQRDAGNTIEMVLVDEKGSRIHATVEDKNIKK 68
Query: 177 FYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQF-SF 235
F +++ G V ++ L ++ ++I T+ V C + +P++ F F
Sbjct: 69 FDSVLKEGDVVTLNPFKLIKYSGDYKSNSLSFKILFYRTTQVKPCDDFPKEVPEKYFVEF 128
Query: 236 RHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGD 295
+ S + VDVIG +++V P + ++ G T + + L+D + TLW D
Sbjct: 129 GDVLN-GSRDTRVFVDVIGQIVNVGP-IEDIKIRGKSTPKLDVELRDRGNVRLICTLWAD 186
Query: 296 FCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSI--GTIPSTQLFINPDFAEAHELRE 353
F K+ + E V ++ +V ++ G + +T++ ++P E R
Sbjct: 187 FA-KQVKVYTEANPAAV--VCVIRCAQVKEWKGNWTISNAMGATRVLLDPPGVFVDEFRS 243
Query: 354 WFDSGGK-----------NAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVT 402
+ G +TVSI + K + V ++ EG+ VT
Sbjct: 244 GLPTDGVVLTNHDNSELFAGSTVSIRDQFLVKNHKRTVRDIVEALE-EGM-------CVT 295
Query: 403 VRAFITFIKSDSFCYTACPLMIGDRQCNKKVT----QSGNR-----WQCDRCNQEIDECD 453
+ + ++ + Y +C + CNK V SG+ + C C++++
Sbjct: 296 MVTVGSVERTSKWYYVSC------KMCNKSVEPYPENSGDDGKPPLYYCGVCDKDVSAVV 349
Query: 454 YRYLLQAQIQDQTGL-TWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFN 512
+RY L ++ D T F G +L A+ELY E + E I + V
Sbjct: 350 FRYRLVLEVSDATNYKARFLLFDAMGSTLLRRTAQELYNAVSENDPSILPSE-IGALVGR 408
Query: 513 QYLFRLKI 520
++LF++ I
Sbjct: 409 RFLFKVSI 416
>gi|297808993|ref|XP_002872380.1| hypothetical protein ARALYDRAFT_911095 [Arabidopsis lyrata subsp.
lyrata]
gi|297318217|gb|EFH48639.1| hypothetical protein ARALYDRAFT_911095 [Arabidopsis lyrata subsp.
lyrata]
Length = 496
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 91/428 (21%), Positives = 169/428 (39%), Gaps = 50/428 (11%)
Query: 118 IAALNPYQGRWAIKARVTAKGDLRRYNNARGD-GKVFSFDLLDSDGGEIRVTCFNAVVDR 176
I +NP + IK + LR + + D G L+D G I T + + +
Sbjct: 14 IDDINPIHDQNKIKVLI-----LRLWKAYQRDAGNTIEMVLVDEKGSRIHATVEDKNIKK 68
Query: 177 FYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQF-SF 235
F +++ G V ++ L ++ ++I T+ V C + +P++ F F
Sbjct: 69 FDSVLKEGDVVTLNPFKLIKYSGDYKSNSLSFKILFYRTTQVKPCDDFPKEVPEKYFVEF 128
Query: 236 RHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGD 295
+ S + VDVIG +++V P + ++ G T + + L+D + TLW D
Sbjct: 129 GDVLN-GSRDTRVFVDVIGQIVNVGP-IEDIKIRGKSTPKLDVELRDRGNVRLICTLWAD 186
Query: 296 FCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSI--GTIPSTQLFINPDFAEAHELRE 353
F K+ + E V ++ +V ++ G + +T++ ++P E R
Sbjct: 187 FA-KQVKVYTEANPAAV--VCVIRCAQVKEWKGNWTISNAMGATRVLLDPPGVFVDEFRS 243
Query: 354 WFDSGGK-----------NAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVT 402
+ G +TVSI + K + V ++ EG+ VT
Sbjct: 244 GLPTDGVVLTNHDNSELFAGSTVSIRDQFLVKNHKRTVRDIVEALE-EGM-------CVT 295
Query: 403 VRAFITFIKSDSFCYTACPLMIGDRQCNKKVT-------QSGN--RWQCDRCNQEIDECD 453
+ + ++ + Y +C + CNK V GN + C C++++
Sbjct: 296 MVTVGSVERTSKWYYVSC------KMCNKSVEPYPENSGDDGNPPLYYCGICDKDVSAVV 349
Query: 454 YRYLLQAQIQDQTGL-TWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFN 512
+RY L ++ D T F G +L A+ELY E + E I + V
Sbjct: 350 FRYRLVLEVSDATNYKARFLLFDAMGSTLLRRTAQELYNAVSENDPSILPSE-IGALVGR 408
Query: 513 QYLFRLKI 520
++LF++ I
Sbjct: 409 RFLFKVSI 416
>gi|195330774|ref|XP_002032078.1| GM26361 [Drosophila sechellia]
gi|194121021|gb|EDW43064.1| GM26361 [Drosophila sechellia]
Length = 228
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 103/231 (44%), Gaps = 19/231 (8%)
Query: 129 AIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYL 188
+IKARV K ++ ++ + G V+ LLD + GEI F + FY I+ G VYL
Sbjct: 13 SIKARVIWKSEITQWRKGQKCGIVYIMHLLD-ESGEITGIVFADYDNGFYGQIQPGLVYL 71
Query: 189 ISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNS 248
IS ++ A ++ N +++F ++L IP+++++F + ++ S +
Sbjct: 72 ISGFDVEEAISDYKVSDNPYQLFFRHNIVLELSA--CGRIPREKYNFLPLVKVSSKADKD 129
Query: 249 IVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLW-GDFCNKEGQKLQEM 307
VD IGI +V L + R IL L D V L LW + N GQ
Sbjct: 130 PVDAIGICTAVGR----LEERRGFFIREIL-LVDPFYHPVMLNLWQKEAVNFVGQPND-- 182
Query: 308 VDVGFFPVLSVKSGKVNDFSGK-SIGTIPSTQLFINPDFAEAHELREWFDS 357
V+ VK + + K + T + INPD +A L W+++
Sbjct: 183 -------VIVVKGARAQPHNNKMKLNASWYTNVQINPDIPDATALLAWYNN 226
>gi|3695387|gb|AAC62789.1| contains similarity to replication protein A1 [Arabidopsis
thaliana]
gi|10177641|dbj|BAB10788.1| replication protein A1-like [Arabidopsis thaliana]
Length = 1073
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 85/410 (20%), Positives = 159/410 (38%), Gaps = 53/410 (12%)
Query: 165 IRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEE 224
+ T +V +F + VG I L A F + +++ + + V C
Sbjct: 1 MHATVKKELVSKFVHKLIVGEWVFIEIFRLTYASSQFRPTNHLYKMAFQVRTEVMGCASV 60
Query: 225 DDSIPKQQFSFRHISEIESAENN--SIVDVIGIVISVNPSVPILRKNGMETQRRILNLKD 282
DS + S+I+S E N +VD IG +I+V + L N T + ++D
Sbjct: 61 SDS---NFLTLAPFSKIQSGELNPHMLVDAIGQIITVG-ELEELEANNKPTTKIDFEIRD 116
Query: 283 TSGRSVELTLWGDFCNKEGQKLQE------------------------MVDVGFFPVLS- 317
+++TLWG + + + QE V + F +L
Sbjct: 117 QMDERMQVTLWGTYAQQVYRACQESEGKNVIFLIRFAKIKSYKGIFSFFVPIPFLSILHD 176
Query: 318 VKSGKVNDFSG-KSIG-TIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGG 375
+ S K + +G KS+ + ++Q+ +NPDF EAH + + G +
Sbjct: 177 LWSLKCYETAGVKSLSNSFDASQVHVNPDFPEAHHFSQTLPNDGAICVYRTRVPRFEMVA 236
Query: 376 AKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSD-SFCYTACPLMIGDRQCNKKVT 434
K + ++ E L S + V V I I +D ++ Y +C + CNKKV
Sbjct: 237 VKRIDYSVYTRNTIEDLLSSTEVGKVRVLCTIYAIDTDWAWYYISC------KTCNKKVN 290
Query: 435 Q------------SGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEIL 482
++ CD C + RY++ A++ D T + F EI+
Sbjct: 291 HIHAGVNGVNNKGKKPKFWCDTCKSVVTNVVSRYMIYAKVMDSTSEAKLVLFDSICFEII 350
Query: 483 GCPAKELYMLKY-ELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRV 531
G A + E++D + +++ + +LF + ++++ D + +
Sbjct: 351 GESATSVLNGSVNEIEDPEDLPDSVKNLIGKTFLFLVWVEKDNISDGKEI 400
>gi|218200560|gb|EEC82987.1| hypothetical protein OsI_28022 [Oryza sativa Indica Group]
Length = 705
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 77/341 (22%), Positives = 150/341 (43%), Gaps = 31/341 (9%)
Query: 118 IAALNPYQGRWAIKARVTAKGDLRRYNNAR-GDGKVFSFDLL--DSDGGEIRVTCFNAVV 174
I+ L W+IKA++ LR +++ ++ SFD+L D +G I T + ++
Sbjct: 6 ISELTTKGQTWSIKAKI-----LRMWDSVNFATDEIMSFDMLLMDEEGETIHATIWKNLI 60
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
D F +I +Y S ++ + K + + + +I + V + + F
Sbjct: 61 DNFRPMISENSIYAFSNFKVQESTK-YCPVDKDLKITFMYNTKVKEMKGASNKFKEYYFE 119
Query: 235 FRHISEIESAENNS--IVDVIGIVISVNP--SVPILRK--NGMETQRRILNLKDTSGRSV 288
F + N + DVIG++ + P S I++ N R + L G +
Sbjct: 120 FATRETLVDRVNKDKILSDVIGLLTKIKPIESRMIMKNSTNPRPKDIREIELLLLDGAKI 179
Query: 289 ELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEA 348
+TLWG L E V +G V+ V S V +F+G S+ + +T+L+ + + E
Sbjct: 180 RVTLWGQL----AHSLNEDV-IGNHTVVVVTSTTVQEFNGLSLRSSSATRLYTDINIPET 234
Query: 349 HELREWFDSGGKNAATVSISREIAAGGAKNEI---HKTVSQIKNEGLGRSEKPDWV-TVR 404
++ S +N + + G + ++ KT+ +I N G ++ D++ T +
Sbjct: 235 WKIISRH-SDEQNLPKLMEVDKSTQGTLEEQMFYNRKTLQEITNMGHDDTKSQDFICTTK 293
Query: 405 AFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRC 445
A I ++ ++ Y +C CNKKV + +++ C++C
Sbjct: 294 ATIDHLQDVTWWYMSC------NDCNKKVVKKIDKYYCEKC 328
>gi|391326557|ref|XP_003737779.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Metaseiulus occidentalis]
Length = 131
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 63/126 (50%), Gaps = 3/126 (2%)
Query: 431 KKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKEL 489
KKV G+ + C++C +R +L+ + D T W TAF E E+ILG A L
Sbjct: 2 KKVHDQGDGTFSCEKCASSGPNYKWRLILKMAVADPTKQLWCTAFNEKAEQILGVTAATL 61
Query: 490 YMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRY 549
Y + I + +F Q+ F+ + + E++ DE+R + V+ ++ S +S++
Sbjct: 62 G--DYSENNPDEMDRIFSASMFKQFHFKFRGRMEVFQDERRFQTAVVEVKEIKPSEDSQH 119
Query: 550 LLDLIS 555
L+ IS
Sbjct: 120 LVKDIS 125
>gi|302816859|ref|XP_002990107.1| hypothetical protein SELMODRAFT_428624 [Selaginella moellendorffii]
gi|300142120|gb|EFJ08824.1| hypothetical protein SELMODRAFT_428624 [Selaginella moellendorffii]
Length = 161
Score = 61.2 bits (147), Expect = 1e-06, Method: Composition-based stats.
Identities = 42/150 (28%), Positives = 72/150 (48%), Gaps = 13/150 (8%)
Query: 290 LTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAH 349
+ LW EG +++E + +G P++ VKSG ++D++GK I + +P+ +
Sbjct: 1 MCLWDSQAKDEGSEIKEKLGLGERPIVCVKSGHISDYNGKYISVTGGST---DPELEDVS 57
Query: 350 ELREW----FDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRA 405
L EW +D+ T S S+ + +G K VS++ + L S+ V
Sbjct: 58 RLCEWMVACYDTTSFVHVTNSSSKAVISGT------KIVSEMLSINLKVSKFSAIFRVIV 111
Query: 406 FITFIKSDSFCYTACPLMIGDRQCNKKVTQ 435
+ I++ F Y AC ++ RQC KKVT
Sbjct: 112 SVKEIQTGDFYYPACVKVVNGRQCGKKVTH 141
>gi|20198198|gb|AAM15454.1| putative replication protein A1 [Arabidopsis thaliana]
Length = 521
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 85/398 (21%), Positives = 168/398 (42%), Gaps = 39/398 (9%)
Query: 165 IRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEE 224
++VT + +F+ ++VG +I +L P+ + + + + + V C
Sbjct: 1 MQVTLRKHYIGKFHRSLKVGDWKIIDNFNLSPSTGKYKISSLSYPMGFKHNTEVSKCDSV 60
Query: 225 DDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTS 284
DS+ F I + ES + N ++D++G V+SV I+ +N ++ ++D S
Sbjct: 61 SDSVFLDLADFEGI-KTESYDENVLIDILGQVVSVGKVDEIVAQNK-PNKKLEFQIRDVS 118
Query: 285 GRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPS----TQLF 340
+ TLWG F K L+ V V+ ++ K+N+F KS +I S + +
Sbjct: 119 NELLSCTLWGVFAEKVFSALKS-VKHDQKTVVLIRYAKINNF--KSEISITSAFDVSDVI 175
Query: 341 INPDFAEAHELREWFDSGGKNAATVSI-----SREIAAGGAKNEIHKTVSQIKNEGLGRS 395
I+P E+ + S + ++I +R+I + + I + GR
Sbjct: 176 IHP--VHVPEVDLFVKSLPSDGLALTIQDSYVNRDIIKTKSVDFFDYPAKTIVDLLNGR- 232
Query: 396 EKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKV------TQSGNRWQ-------- 441
+ W + + + Y CP +CN+K+ T + R Q
Sbjct: 233 DVGQWRILGSIFAIDTDWGWFYFGCP------KCNRKIELVKESTSTVKRIQAPTKPKFW 286
Query: 442 CDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKY-ELQDDV 500
CD+ + I + RY L ++ DQTG + F+ + ++ ++EL +Y E++D
Sbjct: 287 CDKYQESITNVEARYKLHIRVMDQTGEIKLMVFENNATNLIRKSSEELLDGQYEEIEDPT 346
Query: 501 RFGEIIRSRVFNQYLFRLKI-KEELYGDEQRVKITVIR 537
++I + + F + + K +YG + K+T +
Sbjct: 347 IKPDVITNLCGKTFHFLVSVEKANIYGGKDIHKVTKVH 384
>gi|242051188|ref|XP_002463338.1| hypothetical protein SORBIDRAFT_02g042013 [Sorghum bicolor]
gi|241926715|gb|EER99859.1| hypothetical protein SORBIDRAFT_02g042013 [Sorghum bicolor]
Length = 520
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 77/380 (20%), Positives = 154/380 (40%), Gaps = 19/380 (5%)
Query: 118 IAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRF 177
++ + P Q W I ++ + R ++ GD K ++D G + V +
Sbjct: 9 LSDIRPGQFHWTICVSISRMWEFRGKSD-DGDIKHLDLVIIDKKGTSMYVEIPPDSIPIL 67
Query: 178 YEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRH 237
++ G++ ++ K ++ A+ + + N + + L + + E PK +
Sbjct: 68 KPQLKEGKIVVMKKFVVEQAKPEYRVVPNPYMLRLNKRTMITTVEPEPSMFPKVTYMLTP 127
Query: 238 ISEIESAENNS--IVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGD 295
+SE+E + ++ +DVIG + V+ G RR + L+D +G ++ L L G
Sbjct: 128 LSELEQYKGSTERFLDVIGQITQVSDIANFHTVAGTMQMRRKITLRDINGVAINLFLSGA 187
Query: 296 FCNK-EGQKL----QEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHE 350
+ +G K+ QE V F +K G + S S GT + + +IN DF +
Sbjct: 188 RAMEFDGDKVYNLGQETAVVAIFVGTLMKKGLADQPSYLS-GT-SACRWYIN-DF-QIPA 243
Query: 351 LREWFDSGGKNAATVSISREIAAGGAKNEIH-KTVSQIKNEGLGRSEKPDWVTVRAFITF 409
++E+++ V + + KTV Q+K+ +
Sbjct: 244 IQEYYNMLPSEVDAVDKVEISETKTMQQHVQQKTVLQLKDMDPFEQTNTKFQCTVTITKL 303
Query: 410 IKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLT 469
+ + Y+AC + CN + R++C + + +E RY L D+T
Sbjct: 304 SLNQGWYYSACKI------CNTRCYYINGRYKCAKTDCPSNEAQDRYKLCFMAADETYEL 357
Query: 470 WVTAFQESGEEILGCPAKEL 489
AF + ++++G P + L
Sbjct: 358 EFIAFDQKAQQLIGKPIQRL 377
>gi|297838105|ref|XP_002886934.1| hypothetical protein ARALYDRAFT_894112 [Arabidopsis lyrata subsp.
lyrata]
gi|297332775|gb|EFH63193.1| hypothetical protein ARALYDRAFT_894112 [Arabidopsis lyrata subsp.
lyrata]
Length = 496
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 90/427 (21%), Positives = 168/427 (39%), Gaps = 48/427 (11%)
Query: 118 IAALNPYQGRWAIKARVTAKGDLRRYNNARGD-GKVFSFDLLDSDGGEIRVTCFNAVVDR 176
I +NP + IK + LR + + D G L+D G I T + + +
Sbjct: 14 IDDINPIHDQNKIKVLI-----LRLWKAYQRDAGNTIEMVLVDEKGSRIHATVEDKNIKK 68
Query: 177 FYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFR 236
F +++ G V ++ L ++ ++I T+ V C + +P++ F
Sbjct: 69 FDSVLKEGDVVTLNPFKLIKYSGDYKSNSLSFKILFYRTTQVKPCDDFPKEVPEKYFVEF 128
Query: 237 HISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDF 296
S + VDVIG +++V P + ++ G T + + L+D + TLW DF
Sbjct: 129 GDVLNGSRDTRVFVDVIGQIVNVGP-IEDIKIRGKSTPKLDVELRDRGNVRLICTLWADF 187
Query: 297 CNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSI--GTIPSTQLFINPDFAEAHELREW 354
K+ + E V ++ +V ++ G + +T++ ++P E R
Sbjct: 188 A-KQVKVYTEANPAAV--VCVIRCAQVKEWKGNWTISNAMGATRVLLDPPGVFVDEFRSG 244
Query: 355 FDSGGK-----------NAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTV 403
+ G +TVSI + K + V ++ EG+ VT+
Sbjct: 245 LPTDGVVLTNHDNSELFAGSTVSIRDQFLVKNHKRTVRDIVEALE-EGM-------CVTM 296
Query: 404 RAFITFIKSDSFCYTACPLMIGDRQCNKKV----TQSGNR-----WQCDRCNQEIDECDY 454
+ ++ + Y +C + CNK V SG+ + C C++++ +
Sbjct: 297 VTVGSVERTSKWYYVSC------KMCNKSVEPYPENSGDDGKPPLYYCGVCDKDVSAVVF 350
Query: 455 RYLLQAQIQDQTGL-TWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQ 513
RY L ++ D T F G +L A+ELY E + E I + V +
Sbjct: 351 RYRLVLEVFDATNYKARFLLFDAMGSTLLRRTAQELYNAVSENDPSILPSE-IGALVGRR 409
Query: 514 YLFRLKI 520
+LF++ I
Sbjct: 410 FLFKVSI 416
>gi|297822339|ref|XP_002879052.1| hypothetical protein ARALYDRAFT_901564 [Arabidopsis lyrata subsp.
lyrata]
gi|297324891|gb|EFH55311.1| hypothetical protein ARALYDRAFT_901564 [Arabidopsis lyrata subsp.
lyrata]
Length = 496
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 90/427 (21%), Positives = 168/427 (39%), Gaps = 48/427 (11%)
Query: 118 IAALNPYQGRWAIKARVTAKGDLRRYNNARGD-GKVFSFDLLDSDGGEIRVTCFNAVVDR 176
I +NP + IK + LR + + D G L+D G I T + + +
Sbjct: 14 IDDINPIHDQNKIKVLI-----LRLWKAYQRDAGNTIEMVLVDEKGSRIHATVEDKNIKK 68
Query: 177 FYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFR 236
F +++ G V ++ L ++ ++I T+ V C + +P++ F
Sbjct: 69 FDSVLKEGDVVTLNPFKLIKYSGDYKSNSLSFKILFYRTTQVKPCDDFPKEVPEKYFVEF 128
Query: 237 HISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDF 296
S + VDVIG +++V P + ++ G T + + L+D + TLW DF
Sbjct: 129 GDVLNGSRDTRVFVDVIGQIVNVGP-IEDIKIRGKSTPKLDVELRDRGNVWLICTLWADF 187
Query: 297 CNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSI--GTIPSTQLFINPDFAEAHELREW 354
K+ + E V ++ +V ++ G + +T++ ++P E R
Sbjct: 188 A-KQVKVYTEANPAAV--VCVIRCAQVKEWKGNWTISNAMGATRVLLDPPGVFVDEFRSG 244
Query: 355 FDSGGK-----------NAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTV 403
+ G +TVSI + K + V ++ EG+ VT+
Sbjct: 245 LPNDGVVLTNLDNSELFAGSTVSIRDQFLVKNHKRTVRDIVEALE-EGM-------CVTM 296
Query: 404 RAFITFIKSDSFCYTACPLMIGDRQCNKKVT----QSGNR-----WQCDRCNQEIDECDY 454
+ ++ + Y +C + CNK V SG+ + C C++++ +
Sbjct: 297 VTVGSVERTSKWYYVSC------KMCNKSVEPYPENSGDDGKPPLYYCGICDKDVSAVVF 350
Query: 455 RYLLQAQIQDQTGL-TWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQ 513
RY L ++ D T F G +L A+ELY E + E I + V +
Sbjct: 351 RYRLVLEVSDATNYKARFLLFDAMGSTLLRRTAQELYNAVSENDPSILPSE-IGALVGRR 409
Query: 514 YLFRLKI 520
+LF++ I
Sbjct: 410 FLFKVSI 416
>gi|4006824|gb|AAC95166.1| putative replication protein A1 [Arabidopsis thaliana]
Length = 456
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 88/394 (22%), Positives = 155/394 (39%), Gaps = 27/394 (6%)
Query: 150 GKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWE 209
G+ L+D G ++ + +F + G +I+ +L P + +++
Sbjct: 12 GESIKMILVDKAGDKMYAAVRREQIKKFERCVTEGVWKIITTITLNPTSDQYRISDLKYK 71
Query: 210 IFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKN 269
I +TV C DS+ F I S +N + DV+G VI + L N
Sbjct: 72 IGFVFKTTVSPCDTVSDSLFLSLAKFDVILS-GSTNSNILHDVMGQVID-RSEIQDLNAN 129
Query: 270 GMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSG- 328
T++ +L+D + LWG + + QE D G L ++ K+N ++
Sbjct: 130 NKPTKKIDFHLRDQHDTRLACILWGKYAEIVDKACQESTD-GIVVCL-IRFAKINLYNDT 187
Query: 329 KSIGTI-PSTQLFINPDFAEAHELREWFDSGGKN-AATVSISREIAAGGAKNEIHKTVSQ 386
+S+ +Q+F++P AE ++ + G ++ S + + A ++ Q
Sbjct: 188 RSVSNFFDVSQVFVDPTLAELDLFKQSIPTDGLTLGSSGSFHKRLYAPRTGDDDGDYPRQ 247
Query: 387 IKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGN-------- 438
E L S+ TV ++ I +D CY C R NKKV +
Sbjct: 248 TIKEVLTSSDVGKCKTV-CTVSAIDTDWPCYYFCC-----RAHNKKVVKEEAIKLEDVKQ 301
Query: 439 ----RWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKY 494
R+ C+ CN ++ L I DQT F +EILG A +L +
Sbjct: 302 PQKPRFWCEICNGFAKSVVAKFCLHLHIMDQTDEARCMLFDSHAKEILGTTAPQLLDGSF 361
Query: 495 -ELQDDVRFGEIIRSRVFNQYLFRLKI-KEELYG 526
E++D ++I + F L I +E ++G
Sbjct: 362 DEIEDPTVLPDVINGLKGKTFQFLLCIQRENIFG 395
>gi|297838097|ref|XP_002886930.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297332771|gb|EFH63189.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 496
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 89/427 (20%), Positives = 167/427 (39%), Gaps = 48/427 (11%)
Query: 118 IAALNPYQGRWAIKARVTAKGDLRRYNNARGD-GKVFSFDLLDSDGGEIRVTCFNAVVDR 176
I +NP + IK + LR + + D G L+D G I + + +
Sbjct: 14 IDDINPIHDQNKIKVLI-----LRLWKAYQRDAGNTIEMVLVDEKGSRIHAIVEDKNIKK 68
Query: 177 FYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFR 236
F +++ G V ++ L ++ ++I T+ V C + +P++ F
Sbjct: 69 FDSVLKEGDVVTLNPFKLIKYSGDYKSNSLSFKILFYRTTQVKPCDDFPKEVPEKYFVEF 128
Query: 237 HISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDF 296
S + VDVIG +++V P + ++ G T + + L+D + TLW DF
Sbjct: 129 GDVLNGSRDTRVFVDVIGQIVNVGP-IEDIKIRGKSTPKLDVELRDRGNVRLICTLWADF 187
Query: 297 CNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSI--GTIPSTQLFINPDFAEAHELREW 354
K+ + E V ++ +V ++ G + +T++ ++P E R
Sbjct: 188 A-KQVKVYTEANPAAV--VCVIRCAQVKEWKGNWTISNAMGATRVLLDPPGVFVDEFRSG 244
Query: 355 FDSGGK-----------NAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTV 403
+ G +TVSI + K + V ++ EG+ VT+
Sbjct: 245 LPTDGVVLTNHDNSELFAGSTVSIRDQFLVKNHKRTVRDIVEALE-EGM-------CVTM 296
Query: 404 RAFITFIKSDSFCYTACPLMIGDRQCNKKVT----QSGNR-----WQCDRCNQEIDECDY 454
+ ++ + Y +C + CNK V SG+ + C C++++ +
Sbjct: 297 VTVGSVERTSKWYYVSC------KMCNKSVEPYPENSGDDGKPPLYYCGVCDKDVSAVVF 350
Query: 455 RYLLQAQIQDQTGL-TWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQ 513
RY L ++ D T F G +L A+ELY E + E I + V +
Sbjct: 351 RYRLVLEVSDATNYKARFLLFDAMGSTLLRRTAQELYNAVSENDPSILPSE-IGALVGRR 409
Query: 514 YLFRLKI 520
+LF++ I
Sbjct: 410 FLFKVSI 416
>gi|32565075|ref|NP_494733.2| Protein R03H10.6 [Caenorhabditis elegans]
gi|351062333|emb|CCD70303.1| Protein R03H10.6 [Caenorhabditis elegans]
Length = 324
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 87/188 (46%), Gaps = 15/188 (7%)
Query: 112 PARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFN 171
PA + PIA LN + I RVT D RR KVFSF++ D +G IR F
Sbjct: 117 PAAVTPIANLNDSVDNFKIHGRVTLMDDKRR------PEKVFSFEITDVNGYTIRCVAFG 170
Query: 172 AVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQ 231
+ R Y I + Y ++ G +K +N + +EI L+ T++ ++PK
Sbjct: 171 ELGVRLYGSIAKDQSYYLTGGKVKNGHTLYNQTGHAFEIILDEFPTIEPAPAV-LTVPKL 229
Query: 232 QFSFRHISEIESAE-NNSIVDVIGIVISVNPSV----PILRKNGMETQRRILNLKDTSGR 286
+ + +++ + +DVI V +N + PI +N R ++ + D++ R
Sbjct: 230 NLNRVMLCNVQNEQYYRKPIDVIVAVEEINDFLDDYHPI--ENKPPVLRNMVVIDDSNFR 287
Query: 287 SVELTLWG 294
+ LTLWG
Sbjct: 288 -IRLTLWG 294
>gi|402225049|gb|EJU05111.1| hypothetical protein DACRYDRAFT_98791 [Dacryopinax sp. DJM-731 SS1]
Length = 504
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 87/421 (20%), Positives = 164/421 (38%), Gaps = 52/421 (12%)
Query: 130 IKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLI 189
+ AR++ K + YN G G+V + DS G+I FN+ + +E G+VY I
Sbjct: 98 LVARLSGKDTVHAYNTQNGKGRVHNLTFHDS-MGKIGAVAFNSATE-VTNSLESGQVYSI 155
Query: 190 SKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSI 249
++ A+ +N + +++ + + +L D +P ++I ++ I
Sbjct: 156 CNATVCIAKAAYNKTLSLFQLTISMNTEFELVQNFD--LPIHYLDIVPFAKIADMGSDDI 213
Query: 250 VDVIGIVISVNPSV-------PILRKNGMETQRRILNLKDTSGRSVELTLWGD----FCN 298
D+ IV++V + +L K T R +++ D S + L W + F N
Sbjct: 214 CDIHAIVVTVGAGICCKPSHSELLAKE--VTYFRKIHIVDQSSVMLCLCTWQELGEVFKN 271
Query: 299 KEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTI-PSTQLFINPDFAEAHELREWFDS 357
EG+ +S+ + + + G S+ T T + N D + L+ W++
Sbjct: 272 HEGE------------AVSINNLQWDYHDGPSLVTAGKCTHIHFNDDDPDHQALQLWYEE 319
Query: 358 GGKNAATVSISREIAAGGA---------KNEIHKTVSQIKNEGLGRSEKPDWVTVRAFIT 408
+ T+ + AAG K I + +S + G+ D + A
Sbjct: 320 NLETQWTLLLGHTTAAGAQLTNTAPPRDKLCIKEVLSCV-----GKKLDIDTFALVATCK 374
Query: 409 FIKSDSFCYTACPLMIGDRQCNKK---VTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQ 465
+ Y AC D+ C+K V + + W C CN + Y LQ + +
Sbjct: 375 ILLLKDIGYYACM----DKHCHKAAKCVAGTLHLWNCPHCNTRFTKPHSIYCLQLHLDNG 430
Query: 466 TGLTWVTAFQESGEEILGCPAKELYMLKYELQ-DDVRFGEIIRSRVFNQYLFRLKIKEEL 524
T VT F ++ G A L+ ++ D+ + + +V +Y F ++
Sbjct: 431 TRECVVTTFDFIRCQLFGDWAVMLWNQQHSADPDEHTVFQAVLDQVAGKYSFTIQANTVC 490
Query: 525 Y 525
Y
Sbjct: 491 Y 491
>gi|297725599|ref|NP_001175163.1| Os07g0418100 [Oryza sativa Japonica Group]
gi|255677702|dbj|BAH93891.1| Os07g0418100 [Oryza sativa Japonica Group]
Length = 2266
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 102/231 (44%), Gaps = 15/231 (6%)
Query: 118 IAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRF 177
IA+L P G ++ R++ + R N+ L+D G I + ++F
Sbjct: 1440 IASLEPGDGNPTLRIRISRLWEYRDQND-ESILHYIGLVLVDQKGSSIAAMIYPPCDNKF 1498
Query: 178 YEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRH 237
+I G+VYL++ +KP K++ + N+ I STV+ C + D+ + +S +
Sbjct: 1499 KPLITEGKVYLLTYYRVKPCTKHYRPVDNKLAITFTWWSTVEECVDVPDNFAQYAYSLKP 1558
Query: 238 ISEIESA--ENNSIVDVIGIV--ISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLW 293
+E+ S +S DVIGI+ IS +V K+G +R + R+ EL L+
Sbjct: 1559 FNELRSHVDRKDSFTDVIGIITEISSVTTVQTRIKDGDSLKRNVYI------RNAELDLF 1612
Query: 294 GDFCNKEGQKLQEMVDVGFFPV--LSVKSGKVNDFSG--KSIGTIPSTQLF 340
F Q + V+ + P+ L + SG +G K+I I F
Sbjct: 1613 PKFETFLCQIILYSVEGSYEPIKWLDLPSGPAAHNNGEEKTIAEIRELHPF 1663
>gi|357470041|ref|XP_003605305.1| Replication factor A protein [Medicago truncatula]
gi|355506360|gb|AES87502.1| Replication factor A protein [Medicago truncatula]
Length = 283
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 102/212 (48%), Gaps = 14/212 (6%)
Query: 157 LLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATS 216
L+D G I + ++ + E ++ G V+ IS + ++ +NE+++ +
Sbjct: 27 LMDRKGDRIGASIRRTLIYKSKEQLQEGMVFTISSFDVASNSGSYRPSRNEYKLNFTINT 86
Query: 217 TVDLCTEEDDSIPKQQFSFRHISEI--ESAENNSIVDVIGIVISVNPSVPILRKNGMETQ 274
V L + +P +SF ++ ES +NN +VDVIG++ V R +G++T+
Sbjct: 87 KVKLS--KTVLVPTNVYSFTSAYDVFNESYDNNFLVDVIGVMTGVGVEREYER-DGVKTK 143
Query: 275 RRILNLKDTSGRSVELTLWGDFCNKEGQKLQ--EMVDVGFFPVLSVKSGKVNDFSGKSI- 331
++ L D++G + TL+G++ + L E +V V+++ KV F GK
Sbjct: 144 MNVIEL-DSNGYRFKCTLFGEYVEELSSFLSSGESQNV----VVAIMLAKVKLFQGKPAL 198
Query: 332 -GTIPSTQLFINPDFAEAHELREWFDSGGKNA 362
ST++ NP+ E ELR+ F S N+
Sbjct: 199 QNAFSSTRITFNPEIGETKELRKSFLSANTNS 230
>gi|413952084|gb|AFW84733.1| hypothetical protein ZEAMMB73_599002 [Zea mays]
Length = 289
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 64/274 (23%), Positives = 113/274 (41%), Gaps = 31/274 (11%)
Query: 117 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL--DSDGGEIRVTCFNAVV 174
PI LNP + I+ RV K + R A DG + +L+ D G I A+
Sbjct: 5 PITELNPQKINVVIRVRVIRKWEFR---GATNDGPLRHINLILADEQGTAIHAEIPAALA 61
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
+ +I++ +VY I + P++ F + N I + + + P ++
Sbjct: 62 IQKGSLIQIDKVYEIRHFRVMPSRGYFRPVHNNLMIQFTLYTQAKVVNDPPHIFPIYIYN 121
Query: 235 FRHISEIESAENNS--IVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTL 292
++E +N ++DVIG++ + P + + R + +KD S S+++ L
Sbjct: 122 LTSFEKVEENVDNRNYLIDVIGMLTQI--GAPHVAGYNNSSIVRDIFIKDISDASLKIML 179
Query: 293 WGD---------FCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKS-IGTIPSTQLFIN 342
WGD CN+ K ++ VG F G+S + + +T + N
Sbjct: 180 WGDQASGFSIDNVCNESNNKPIVIMFVGCL---------AKQFKGQSYLSSTTATTWYFN 230
Query: 343 PDFAEAHELREWFDSGGKNAATV-SISREIAAGG 375
P+ EA E + + G NA + S +I GG
Sbjct: 231 PNIPEAQEY--YINHKGLNAPPLYHDSYKITNGG 262
>gi|442748039|gb|JAA66179.1| Hypothetical protein [Ixodes ricinus]
Length = 103
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 457 LLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLF 516
+L I D WVT FQES E ILG L LK +++ F EI ++ F ++F
Sbjct: 2 ILSVNIADYQDNQWVTCFQESAEAILGQSTAYLGELK--DKNEQAFEEIFQNANFRSFVF 59
Query: 517 RLKIKEELYGDEQRVKITVIRADQVNYSSESRYLL 551
++++K E Y DE R+K TV+ V+Y SR ++
Sbjct: 60 KIRVKLETYNDESRIKATVMDVKPVDYREYSRRMI 94
>gi|225464095|ref|XP_002263643.1| PREDICTED: uncharacterized protein LOC100255160 [Vitis vinifera]
Length = 979
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 40/55 (72%), Gaps = 1/55 (1%)
Query: 345 FAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPD 399
F+E +L+EWFD G+N +VSISRE+ G + ++ KT+SQI++E G SEKPD
Sbjct: 926 FSEGCKLKEWFDKEGRNTPSVSISREVITIG-RTDVRKTISQIRDERQGTSEKPD 979
>gi|321455751|gb|EFX66876.1| hypothetical protein DAPPUDRAFT_331651 [Daphnia pulex]
Length = 245
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 82/176 (46%), Gaps = 39/176 (22%)
Query: 182 EVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEI 241
+VG V + ++KPA ++ ++N +EI +F + +
Sbjct: 98 DVGEV--TEEATVKPANNKYSSMRNGYEI-----------------------TFNQNTAL 132
Query: 242 ESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEG 301
+ EN+SIVDVIG+V+ + V I +KN + R L K + E+TL
Sbjct: 133 PNLENDSIVDVIGLVLYSSEFVFIDKKNKVS---RFLEAKLVGSTNTEVTL--------- 180
Query: 302 QKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDS 357
L ++VD VK N+F G + T+ ST + +NP EAH+LREW+++
Sbjct: 181 SLLGKLVDQRIVAYKGVKIS--NNFGGCYLETLSSTVVQVNPAMNEAHQLREWYNN 234
>gi|388499736|gb|AFK37934.1| unknown [Lotus japonicus]
Length = 406
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 82/389 (21%), Positives = 157/389 (40%), Gaps = 42/389 (10%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDL--LDSDGGEIRVTCFNA 172
I P+ L P W IK RV L + G+ K S +L LD GG+I+ T
Sbjct: 7 IDPVVTLCPPNHNWRIKVRVVR---LWIADGFAGENKPASMELILLDQHGGKIQATVRKL 63
Query: 173 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQ 232
+ ++ E G VY+I+ L P + + + I + + E IP+
Sbjct: 64 MFRKWGEQFVEGNVYIITFFHLIPNLGAYRPTDHAFRILFNPKTKI--IPAESSIIPRWG 121
Query: 233 FSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTL 292
FS + S++ N+ +V + + K+ + T+ +L + D G+ +E L
Sbjct: 122 FSLKDSSQL----NDDGFQTEYLVATSEERTYV--KDDIVTKMMLLEISDDKGK-LECAL 174
Query: 293 WGDFCNKEGQKLQEMVDVGFF--PVLSVKSGKVNDFSGKSI--GTIPSTQLFINPDFAEA 348
+G++ Q + + + PV+ ++ K+ F GK++ + ++++ NP+ AEA
Sbjct: 175 FGEYV----QIVLDYLSSNPLEKPVVVLQLAKLKSFRGKNVLQNVMKASRIIFNPEVAEA 230
Query: 349 HELREWFDSGGKNAATVSISREIAAGGA--------KNEIHKTVSQIKNEGLGRSEKPDW 400
L + SG + I+ + N KT+ + NE +E +
Sbjct: 231 ESLMDRI-SGLNMQPNQPVGHIISPNPSVPIFEDFMNNYPKKTICAL-NE---TTEDGLF 285
Query: 401 VTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQA 460
+ + ++ D + Y AC +C+K VT + C C + + RY ++
Sbjct: 286 IVYGTVVGLLQDDLWWYFAC-------KCHKAVTFDDGLYFCPGCCKHVMNVSARYKIKL 338
Query: 461 QIQDQTGLTWVTAFQESGEEILGCPAKEL 489
++ D T F ++ K++
Sbjct: 339 EVFDGTDSGNFLLFDSDAHHLIKKSCKDM 367
>gi|321457156|gb|EFX68248.1| hypothetical protein DAPPUDRAFT_330274 [Daphnia pulex]
Length = 227
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 62/134 (46%), Gaps = 5/134 (3%)
Query: 221 CTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNL 280
TEE P F+F ++ + EN SIVDVIG+V+ + V + K ++
Sbjct: 53 VTEEAAEKPTITFNFVPFDQLTNLENISIVDVIGLVLHLQEKVLVETKTTKISRSLTAEF 112
Query: 281 KDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLF 340
D++ V L N G L+++ D + VK N F + + T+ ST +
Sbjct: 113 VDSTNTEVRL---HSLFNYRGSLLEKVADKCIVALSGVKIS--NKFGRRYLETLSSTVVQ 167
Query: 341 INPDFAEAHELREW 354
INPD E ELREW
Sbjct: 168 INPDMTEVRELREW 181
>gi|391325707|ref|XP_003737369.1| PREDICTED: probable replication factor A 73 kDa subunit-like
[Metaseiulus occidentalis]
Length = 228
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 97/228 (42%), Gaps = 11/228 (4%)
Query: 136 AKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLK 195
K D++ + DG +FSF L D + +I V + +E I+ G Y I +
Sbjct: 2 TKSDMKTFKKDNTDGNLFSFTLAD-NTADINVLVTGELGHEMFEKIQTGHCYQICDFKQR 60
Query: 196 PAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGI 255
P+ + + E+ L S V + +PK+ + I++I E ++D+ I
Sbjct: 61 PSHPLYKVTNHTCELLLGKISEVRQI--DGGHLPKKVEKYFTINQIRDTEVGKMIDLQAI 118
Query: 256 VISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPV 315
+ V K G R+ + L D S + V LTLWG +K + ++VD F
Sbjct: 119 IYDVGEIHSYSGKAGDIRNRQNILLVDDSRKIVSLTLWGSLIHKVDDREGQVVD---FQK 175
Query: 316 LSVKSGKVNDFSGKSIGTIPSTQL-FINPDFAEAHELREWFDSGGKNA 362
LSVK K K++ + +T + F + EL +W+ S N
Sbjct: 176 LSVKEFKAR----KNLSSTGNTSIQFPIRSNSRTRELEDWWRSNKGNV 219
>gi|413954915|gb|AFW87564.1| hypothetical protein ZEAMMB73_967726 [Zea mays]
Length = 289
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 65/274 (23%), Positives = 112/274 (40%), Gaps = 31/274 (11%)
Query: 117 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL--DSDGGEIRVTCFNAVV 174
PI LNP + I+ RV K + R A DG + +L+ D G I A+
Sbjct: 5 PITELNPQKINVVIRVRVIRKWEFR---GATNDGPLRHINLILADEQGTAIHAEIPAALA 61
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
+I++ VY I + P++ F + N I + + + P ++
Sbjct: 62 IEKGSLIQIDIVYEIRHFRVMPSRGYFKPVHNNLMIQFTLYTQAKVVNDPPHIFPIYIYN 121
Query: 235 FRHISEIESAENNS--IVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTL 292
++E +N ++DVIG++ + P + + R + +KD S S+++TL
Sbjct: 122 LTSFEKVEENVDNRNYLIDVIGMLTQI--GAPHVAGYNNSSIVRDIFIKDISDASLKITL 179
Query: 293 WGD---------FCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKS-IGTIPSTQLFIN 342
WGD CN+ K ++ VG F G+S + + +T + N
Sbjct: 180 WGDQASGFSIDNVCNESNNKPIVIMFVGCL---------AKQFKGQSYLSSTTATTWYFN 230
Query: 343 PDFAEAHELREWFDSGGKNAATV-SISREIAAGG 375
P+ EA E + + G NA + S +I GG
Sbjct: 231 PNIPEAQEY--YINHLGLNAPPLYHDSYKITNGG 262
>gi|385305380|gb|EIF49361.1| subunit of heterotrimeric replication protein a [Dekkera
bruxellensis AWRI1499]
Length = 138
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 74/136 (54%), Gaps = 10/136 (7%)
Query: 197 AQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIV 256
A+ +++LK+++E+ + + ++ C + D +PK F F + ++ + +N +++DV+GI+
Sbjct: 2 AKPQYSNLKHQYELQFDRDTVIEECND-DXGVPKLHFDFVKLDQVXNLDNGTVIDVLGIL 60
Query: 257 ISVNPSVPIL-RKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPV 315
V+ I+ R G RR + + D + +V + LW NK ++ ++ V
Sbjct: 61 KEVHDKQEIVSRSTGKPFDRREVEIVDDTHFAVTVALW----NKHAREF----NLSTGTV 112
Query: 316 LSVKSGKVNDFSGKSI 331
++ K +V D+ GKS+
Sbjct: 113 VAFKGARVQDYGGKSL 128
>gi|297736059|emb|CBI24097.3| unnamed protein product [Vitis vinifera]
Length = 115
Score = 58.9 bits (141), Expect = 8e-06, Method: Composition-based stats.
Identities = 34/99 (34%), Positives = 58/99 (58%), Gaps = 3/99 (3%)
Query: 250 VDVIGIVISVNPSVPILRKNGME-TQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMV 308
V V G+V SV+P++ I RK+ + +R + D + ++V ++LW D GQ+L +
Sbjct: 11 VYVSGVVQSVSPTMRIQRKSHNDIVPKRDITFADKTKKTVVVSLWNDHATNVGQELLDNA 70
Query: 309 DVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAE 347
D FP++++KS KV DF S+ T+ + + +NPD E
Sbjct: 71 DK--FPIVAIKSLKVGDFQVVSLSTLSESIVLVNPDTRE 107
>gi|125547080|gb|EAY92902.1| hypothetical protein OsI_14707 [Oryza sativa Indica Group]
Length = 455
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 61/265 (23%), Positives = 117/265 (44%), Gaps = 23/265 (8%)
Query: 157 LLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATS 216
L+D G + D+F +++ +VY SK + P++ + N++ I L +
Sbjct: 20 LVDEKGNAMYAEIPGVEADKFRPLLQESKVYTFSKFLVLPSKPAYKPFPNKYMIKLTPWT 79
Query: 217 TVDLCTEEDDSIPKQQFSFRHISEIE--SAENNSIVDVIGIVISVNPSVPI-LRKNGMET 273
V+ E P F+ S++ DVIG++I V+ + + +T
Sbjct: 80 NVEQVNEVPADFPSHVFNLVQFSDLSLRVGMQEYFTDVIGMIIGVSKLAYVRMASKTSDT 139
Query: 274 QRRILNLKDTSGRSVELTLWG----DFCNKEGQKL-QEMVDVGFFPVLSVKSGKVNDFSG 328
+R++ L+D + V+L LWG DF + Q+ V VG F G +
Sbjct: 140 PKRVIALRDLANCEVKLVLWGEHALDFDADAVHSVGQDNVVVGIF------VGTLMKAYN 193
Query: 329 KSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIK 388
K++ + + ++N D E+ ++FDS G +A + + I+AG + +Q++
Sbjct: 194 KTLSGGSACKWYLNEDIP---EINQFFDSLGDSAPKI---QWISAGEKSFGSSQRPAQLE 247
Query: 389 NEGLGRSEKPD-WVTVRAFITFIKS 412
++ + +K D W V+ TF+ S
Sbjct: 248 HKSVADLKKIDPWEAVK--FTFVVS 270
>gi|413917703|gb|AFW57635.1| hypothetical protein ZEAMMB73_449704 [Zea mays]
Length = 459
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 69/281 (24%), Positives = 115/281 (40%), Gaps = 39/281 (13%)
Query: 117 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSD--------GGEIRVT 168
PI LNP + I+ RV K + R A DG + +L+ +D G I
Sbjct: 5 PITELNPQKINVVIRVRVIRKWEFR---GATNDGPLRHINLILADEQVIIFFKGTAIHAE 61
Query: 169 CFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSI 228
A+ +I++ +VY I + P++ F + N I + + +
Sbjct: 62 IPAALAIEKGSLIQIDKVYEIRHFRVMPSRGYFKPVHNNLMIQFTLYTQAKVVNDPPHIF 121
Query: 229 PKQQFSFRHISEIESAENNS--IVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGR 286
P ++ ++E +N ++DVIG++ + S P + + R + +KD S
Sbjct: 122 PIYIYNLTSFEKVEENVDNRNYLIDVIGMLTQI--SAPHVVGYNNSSIVRDIFIKDISDA 179
Query: 287 SVELTLWGD---------FCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSI--GTIP 335
S+++TLWGD CN+ K ++ VG F G+S GT
Sbjct: 180 SLKITLWGDQASGFSINNVCNESNNKPIVIMFVGCL---------AKQFKGQSYLSGTTA 230
Query: 336 STQLFINPDFAEAHELREWFDSGGKNAATV-SISREIAAGG 375
+T F NP+ EA E + + G NA + S +I GG
Sbjct: 231 TTWYF-NPNIPEAQEY--YINHKGLNAPPLYHDSYKITNGG 268
>gi|297743678|emb|CBI36561.3| unnamed protein product [Vitis vinifera]
Length = 107
Score = 58.5 bits (140), Expect = 9e-06, Method: Composition-based stats.
Identities = 34/99 (34%), Positives = 58/99 (58%), Gaps = 3/99 (3%)
Query: 250 VDVIGIVISVNPSVPILRKNGME-TQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMV 308
V V G+V SV+P++ I RK+ + +R + D + ++V ++LW D GQ+L +
Sbjct: 11 VYVSGVVQSVSPTMRIRRKSHNDIVPKRDITFADKTKKTVVVSLWNDHATNVGQELLDNA 70
Query: 309 DVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAE 347
D FP++++KS KV DF S+ T+ + + +NPD E
Sbjct: 71 DK--FPIVAIKSLKVGDFQVVSLSTLSESIVLVNPDTRE 107
>gi|391331921|ref|XP_003740388.1| PREDICTED: replication factor A protein 1-like [Metaseiulus
occidentalis]
Length = 217
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 86/180 (47%), Gaps = 11/180 (6%)
Query: 150 GKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWE 209
GK ++D+ +I++ FN +F EI++ + Y I + + A FN ++ E
Sbjct: 2 GKCSPSQVVDA-STDIQIVAFNDNCLQFSEILQEHQEYDIEGFACRQANPIFNTTSSKLE 60
Query: 210 IFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRK- 268
I L + + I ++ ++ SE++S + N IVDV G++I V+P RK
Sbjct: 61 IVLNKGTKIRALNRATLRIAEKSPNYVSFSELQSMKENDIVDVCGVIIHVSPVEEFTRKR 120
Query: 269 NGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSG 328
+G +R L + D + + + LW + N E L E V V SV+ G++N F G
Sbjct: 121 DGKPIVKRELRIVDEDRKILTINLWNERTNTE---LVEKVAV------SVRHGRINIFRG 171
>gi|321456582|gb|EFX67685.1| hypothetical protein DAPPUDRAFT_330783 [Daphnia pulex]
Length = 182
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 94/211 (44%), Gaps = 48/211 (22%)
Query: 151 KVFSFDLLDSD----GGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKN 206
K SF LLD + G E+ N + +VG V + ++KPA ++ ++N
Sbjct: 5 KNHSFHLLDVEPLVPGSEVEEKIGNPQT-----LNDVGEV--TEEAAVKPANNKYSSMRN 57
Query: 207 EWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPIL 266
+EI +F + + + EN+SIVDVIG+V+ + V I
Sbjct: 58 GYEI-----------------------TFNQNTALPNLENDSIVDVIGLVLYSSEFVFID 94
Query: 267 RKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDF 326
+KN + R L K + E+TL L ++VD VK N+F
Sbjct: 95 KKNKV---SRFLEAKLVGSTNTEVTL---------SLLGKLVDQRIVAYKGVKIS--NNF 140
Query: 327 SGKSIGTIPSTQLFINPDFAEAHELREWFDS 357
G + T+ ST + +NP EAH+LREW+++
Sbjct: 141 GGCYLETLSSTVVQVNPAMNEAHQLREWYNN 171
>gi|50838977|gb|AAT81738.1| hypothetical protein [Oryza sativa Japonica Group]
gi|108708958|gb|ABF96753.1| hypothetical protein LOC_Os03g31560 [Oryza sativa Japonica Group]
Length = 1500
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 98/241 (40%), Gaps = 30/241 (12%)
Query: 130 IKARVTAKGDLRRYNNARGDGKVFSFDL--LDSDGGEIRVTCFNAVVDRFYEIIEVGRVY 187
I ARV+ + NN K+F DL LD G I + + ++ +++ +VY
Sbjct: 996 ILARVSRLWNFTDLNN---HTKIFHTDLVLLDEMGTSIHAQIYPPITEKMKPLLKEEKVY 1052
Query: 188 LISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENN 247
I +++ A + + + N I +T++ P FS ++ S
Sbjct: 1053 YIDSFTVRAANRTYRPVANNLMILFSKWTTLEEHINVPPHFPGITFSLTPFEDVPSLVEK 1112
Query: 248 SIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWG---------DFCN 298
+ V+G V ++ P + E+ +R L ++D S ++ +TLWG D N
Sbjct: 1113 NSFYVVGAVTTIRP-----KSRNAESLKRTLQIRDASNSTLPVTLWGERATSFDANDIYN 1167
Query: 299 KEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPST--QLFINPDFAEAHELREWFD 356
+ Q +V VG V D+ G + S+ + +IN + E EL E F
Sbjct: 1168 AGQTQAQVVVFVGTL---------VKDYRGLGLTLTGSSPCKWYINLNIPEVAELNESFS 1218
Query: 357 S 357
+
Sbjct: 1219 T 1219
>gi|357503597|ref|XP_003622087.1| Replication factor A 51 kDa subunit [Medicago truncatula]
gi|355497102|gb|AES78305.1| Replication factor A 51 kDa subunit [Medicago truncatula]
Length = 466
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 69/324 (21%), Positives = 135/324 (41%), Gaps = 37/324 (11%)
Query: 181 IEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS-FRHIS 239
IE G Y I K ++ ++ F +++++ L ++ + + + S F+ F+HI
Sbjct: 27 IEEGASYTIEKFLVQFNKEKFKPTNHKYKLTLIGSTIITKTSYDKISANLFNFTKFQHI- 85
Query: 240 EIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNK 299
I + ++DVIG V+ + ++ G T+ L L+D ++ TLWG F +
Sbjct: 86 -IGGTDKGVLMDVIGHVVGTT-DIKDVQVKGKMTKILDLTLEDLESNTIICTLWGHFAEQ 143
Query: 300 EGQKLQEMVDVGFFPVLSVKS-GKVNDFSGKSIGTIPS----TQLFINPDFAEAHELREW 354
+ + FP++ V ++N + + I + T+L INP+ E ++
Sbjct: 144 MNSYMS--TNGNTFPIVVVMHLCRLNVYVFGGMYGIANAFNETKLLINPNIEECCNYKKG 201
Query: 355 FDSGGKNAATVSISREIAA----------GGAKNEIHKTVSQIKNEGLGRSEKPDWVTVR 404
+G NA+ ++ A KN ++Q K G +V +
Sbjct: 202 MKTG--NASLTQGVTQMTAQSSLSLSNDLLQTKNMTILDITQAKQVGA-------YVVLA 252
Query: 405 AFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQD 464
I + +CY +C +C KKV ++ C++C+ +D R+++ + D
Sbjct: 253 KIIGIDTNKKWCYVSC------NKCFKKVEPVCTKYFCEKCDTLVDATK-RFMVHIHVMD 305
Query: 465 QTGLTWVTAFQESGEEILGCPAKE 488
+G T + F + G KE
Sbjct: 306 DSGSTTIVLFDGVISQHFGKTTKE 329
>gi|225446433|ref|XP_002276442.1| PREDICTED: uncharacterized protein LOC100264432 [Vitis vinifera]
gi|302143328|emb|CBI21889.3| unnamed protein product [Vitis vinifera]
Length = 104
Score = 58.2 bits (139), Expect = 1e-05, Method: Composition-based stats.
Identities = 32/96 (33%), Positives = 54/96 (56%)
Query: 461 QIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKI 520
++ D +G ++ F E E I GC A EL LK + ++ RF ++ ++ LF++ +
Sbjct: 4 KVSDDSGEAILSLFNEQAERIFGCSADELDKLKPQEGEEKRFQHKMKDAIWVPNLFQIIV 63
Query: 521 KEELYGDEQRVKITVIRADQVNYSSESRYLLDLISK 556
+ Y +E+R IT Q ++ +ESR+LLD ISK
Sbjct: 64 AQHEYKNEKRQWITARAVVQDDFEAESRFLLDEISK 99
>gi|302783422|ref|XP_002973484.1| hypothetical protein SELMODRAFT_413871 [Selaginella moellendorffii]
gi|300159237|gb|EFJ25858.1| hypothetical protein SELMODRAFT_413871 [Selaginella moellendorffii]
Length = 259
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
Query: 252 VIGIVISVNPSVPILRKNGMETQ-RRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDV 310
V G V S + S I R N T ++ G SV+L LW +EG +Q D
Sbjct: 43 VQGTVYSFSGSGGIRRSNQAYTPFEATWEIQANKGHSVDLCLWDLKAEEEGSYIQ---DS 99
Query: 311 GFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWF 355
G P++ VK GKV D++GKS+ I + + I P+ +LREW
Sbjct: 100 GVQPIICVKGGKVLDYNGKSLSAIGVSTILIEPEMEAMADLREWM 144
>gi|62733633|gb|AAX95750.1| Eukaryotic protein of unknown function (DUF889), putative [Oryza
sativa Japonica Group]
gi|110288790|gb|ABG65978.1| hypothetical protein LOC_Os10g12174 [Oryza sativa Japonica Group]
Length = 1806
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/161 (21%), Positives = 80/161 (49%), Gaps = 5/161 (3%)
Query: 140 LRRYNNARGDGKVFSFDLL--DSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPA 197
L + + + K++ DL+ D GG I F ++ F ++ G+VY + +K +
Sbjct: 1339 LWEFTDCKDATKIYHIDLVLVDEKGGSIHAQIFPPLIQVFKPLLAEGKVYYLDSYRVKTS 1398
Query: 198 QKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIES--AENNSIVDVIGI 255
K++ + N + ++V+ C + + P +S ++E+ + +N S VDVIG
Sbjct: 1399 NKSYRPVANPLMMTFTKWTSVEQCLDVPFNFPTVVYSLTPLNEVSNFVDKNESFVDVIGF 1458
Query: 256 VISVN-PSVPILRKNGMETQRRILNLKDTSGRSVELTLWGD 295
+ ++ P++ + + + +R + + DT+ ++ ++LW +
Sbjct: 1459 ITEISTPTMLRPKSRDVSSLKRTVQICDTNNSTLNVSLWAE 1499
>gi|297725313|ref|NP_001175020.1| Os07g0113000 [Oryza sativa Japonica Group]
gi|255677455|dbj|BAH93748.1| Os07g0113000 [Oryza sativa Japonica Group]
Length = 1790
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 75/369 (20%), Positives = 149/369 (40%), Gaps = 46/369 (12%)
Query: 140 LRRYNNARGDGKVFSFDLL--DSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPA 197
L + + + K++ DL+ D GG I F ++ F ++ G+VY + +K +
Sbjct: 1244 LWEFTDCKDATKIYHIDLVLVDEKGGSIHAQIFPPLLQVFKPLLTEGKVYYLDSYRVKTS 1303
Query: 198 QKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIES--AENNSIVDVIGI 255
K++ + N + ++V+ C + + P ++ ++E+ + +N S VDVIG
Sbjct: 1304 NKSYRPVANPLMMTFTKWTSVEQCLDVPFNFPTVVYTLTPLNEVSNFVDKNESFVDVIGF 1363
Query: 256 VISVN-PSVPILRKNGMETQRRILNLKDTSGRSVELTLW--------GDFCNKEGQKLQE 306
+ ++ P++ + + +RI+ + D + ++ ++LW + +K GQ+
Sbjct: 1364 ITEISTPTMLRPKSRDASSLKRIIQICDANNSTLNVSLWAEQALAFDAESIHKAGQR--- 1420
Query: 307 MVDVGFFPVLSVKSGKVNDFSGKSIGTI-----PSTQLFINPDFAEAHELREWFDSG-GK 360
L++ G + G + I P+T I + A+ +RE D K
Sbjct: 1421 ---------LALSRGSACKWIGANFQPIKLLQAPTTN--IADENADDKTVRELLDMNPHK 1469
Query: 361 NAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTAC 420
N A + IA A ++ + + + R+ VT+R S+ Y +C
Sbjct: 1470 NRAPAT---NIADENADDKTVRELLDMNPHKNRRTRFQANVTIRK---ICNDSSWWYNSC 1523
Query: 421 PLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEE 480
+C + V G ++C C I RY L D T F + +
Sbjct: 1524 ------EKCLRVVKPFGYTYKCTGC-YNIAMAVPRYKLSVLAGDDTADAVFILFGKIAQR 1576
Query: 481 ILGCPAKEL 489
I+ P + L
Sbjct: 1577 IVRKPVELL 1585
>gi|218189336|gb|EEC71763.1| hypothetical protein OsI_04360 [Oryza sativa Indica Group]
Length = 397
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/268 (22%), Positives = 112/268 (41%), Gaps = 34/268 (12%)
Query: 157 LLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATS 216
L+D G + D+F +++ +VY SK + P++ + N++ I L +
Sbjct: 20 LIDEKGNAMYAEIPGVEADKFRPLLQESKVYTFSKFLVLPSKPAYKPFPNKYMIKLTPWT 79
Query: 217 TVDLCTEEDDSIPKQQFSFRHISEIE--SAENNSIVDVIGIVISVNPSVPI-LRKNGMET 273
V+ E P F+ S++ DVIG++I V+ + + +T
Sbjct: 80 NVEQVNEVPADFPSHVFNLVQFSDLSLRVGMQEYFTDVIGMIIGVSKLAYVRMASKTSDT 139
Query: 274 QRRILNLKDTSGRSVELTLWG----DFCNKEGQKL-QEMVDVGFFPVLSVKS-GKVNDFS 327
+R++ L+D + V+L LWG DF + Q+ VG F +K+ S
Sbjct: 140 PKRVIALRDLANCEVKLVLWGEHALDFDVDAVHNVGQDNAVVGIFVGTLMKAYNNEETLS 199
Query: 328 GKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQI 387
G S + + ++N D E+ ++FDS G +A + + I+AG
Sbjct: 200 GGS-----ACKWYLNEDIP---EINQFFDSLGDSAPKI---QWISAGA------------ 236
Query: 388 KNEGLGRSEKPDWVTVRAFITFIKSDSF 415
E G S++P W+ ++ K D +
Sbjct: 237 --ESFGLSQRPAWLEHKSVADLKKIDPW 262
>gi|7529251|emb|CAB86481.1| putative protein [Arabidopsis thaliana]
Length = 269
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 103/238 (43%), Gaps = 10/238 (4%)
Query: 112 PARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFN 171
P P+ +L PY+ W I+ ++ R+Y+ G+ L+D G ++
Sbjct: 6 PLPFTPLKSLKPYKNAWRIQVKLLHV--WRQYSVKAGES--IEMILVDEAGDKMYAAVRR 61
Query: 172 AVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQ 231
+ +F + G +I+ +L P + +++I +TV C D++
Sbjct: 62 EQIKKFERCLTEGVWKIITTITLNPTSGKYRISDLKYKIGFVFKTTVSPCDSVSDALFLS 121
Query: 232 QFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELT 291
F I SA +N + DV+G V+ + L N T++ +LKD + T
Sbjct: 122 LAKFDVILS-GSANSNILHDVMGQVVD-RSEIQDLNANNKPTKKIDFHLKDQHDTRLACT 179
Query: 292 LWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFS-GKSIG-TIPSTQLFINPDFAE 347
LWG + Q QE D G L ++ K+N ++ +S+ + +Q+F++P AE
Sbjct: 180 LWGKYAEIVDQACQESTD-GIVVCL-IRFAKINLYNDSRSVSNSFDVSQVFVDPTLAE 235
>gi|414888073|tpg|DAA64087.1| TPA: hypothetical protein ZEAMMB73_996720 [Zea mays]
Length = 483
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 75/383 (19%), Positives = 147/383 (38%), Gaps = 31/383 (8%)
Query: 117 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL--DSDGGEIRVTCFNAVV 174
P++AL ++ +V K + R A +G + D++ D G I + +
Sbjct: 5 PLSALTLQDRNAEVQIQVHRKWEFR---GAVDNGPILHIDMILTDCTGNAIHCQIPSFLA 61
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
+ +VG++Y +++ S+ A+ + + + ++++ +T++LC P +
Sbjct: 62 ATRGDEFQVGKIYKMTRFSVARAKSTYKPVDGDLMLYVKPYTTLELCHTSPSGFPLYVYH 121
Query: 235 FRHISEIESAENNS--IVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTL 292
+I+ +N+ DV+GI+ ++ P+ + + R + +K+ S +++TL
Sbjct: 122 LTSYDKIDPDGSNARNFHDVLGIITEISAIKPVGNAHIPSSYNRHVLIKNLSDDILKITL 181
Query: 293 WG------DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFA 346
WG N + Q + V F L + SG + + + NP
Sbjct: 182 WGKRAQEFSLTNTYDPQKQTPIVVLFVGCLPKEYQGEVLLSGGA-----ACHWYFNPSIE 236
Query: 347 EAHELREWFDSGGKNAATVSISR-EIAAGGAKNEIHKTVSQIKNEGLGRSEKPD--WVTV 403
EA +S N S+ + EI H + I + L + PD +
Sbjct: 237 EAEAFYSRIESEKINIELPSLDKQEITPPSFPQREHHNLKYILS--LNPHDVPDQGYECT 294
Query: 404 RAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQ 463
+ ++ Y AC C K + QC C + + C +RY L +
Sbjct: 295 VTITCIPEGKTWYYIAC------NTCPNKPSIDPVIRQCSTC-RSTNYC-FRYKLTFKAS 346
Query: 464 DQTGLTWVTAFQESGEEILGCPA 486
D T + AF I+G P
Sbjct: 347 DGTEEAEMFAFDNVARTIIGKPC 369
>gi|222619510|gb|EEE55642.1| hypothetical protein OsJ_04010 [Oryza sativa Japonica Group]
Length = 321
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 110/258 (42%), Gaps = 26/258 (10%)
Query: 157 LLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATS 216
L+D G + D+F +++ +VY SK + P++ + N++ I L +
Sbjct: 20 LIDEKGNAMYAEIPGVEADKFRPLLQESKVYTFSKFLILPSKPAYKPFPNKYMIKLTPWT 79
Query: 217 TVDLCTEEDDSIPKQQFSFRHIS--EIESAENNSIVDVIGIVISVNPSVPI-LRKNGMET 273
V+ E P F+ S + DVIG++I V+ + + +T
Sbjct: 80 NVEQVNEVPADFPSHVFNLVQFSYLSLRVGMQEYFTDVIGMIIGVSKLAYVRMASKTSDT 139
Query: 274 QRRILNLKDTSGRSVELTLWG----DFCNKEGQKL-QEMVDVGFFPVLSVKS-GKVNDFS 327
+R++ L+D + V+L LWG DF + Q+ VG F +K+ S
Sbjct: 140 PKRVIALRDLANCEVKLVLWGEHAPDFDADAVHSVGQDNAVVGIFVDTLMKAYNNEETLS 199
Query: 328 GKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVS-ISREIAAGGAKNEI----HK 382
G S + + ++N D E+ ++FDS G +A + IS + G+ HK
Sbjct: 200 GGS-----ACKWYLNEDIP---EINQFFDSLGDSAPKIQWISTGAESFGSSQRPARLEHK 251
Query: 383 TVSQIKN----EGLGRSE 396
+V+ +K E GRS+
Sbjct: 252 SVADLKKIDPWEAAGRSD 269
>gi|145498019|ref|XP_001434998.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124402126|emb|CAK67601.1| unnamed protein product [Paramecium tetraurelia]
Length = 555
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 77/375 (20%), Positives = 159/375 (42%), Gaps = 56/375 (14%)
Query: 128 WAIKARVTAKGDLRRYN--NARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGR 185
W ++ R+ K D+ + N+ + F +LD + G I ++ + + I+E G+
Sbjct: 149 WVLEGRIVDKSDMLEFKKKNSNVLSQYFKIIILDREQGIIPGLFYDKSNLKMFPILEKGK 208
Query: 186 VYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPK-QQFSFRHISEIESA 244
VYL GS+ ++ N N+ K+ + T + E+D +PK S + I +++
Sbjct: 209 VYLFKNGSV--SKDNSNYPKS-----ITFTQFSIIQESENDDLPKIPMISPKKIYDLQGQ 261
Query: 245 ENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKL 304
+SIVD++ ++ + + R+ L + D +GR V + + + +K
Sbjct: 262 PIDSIVDLVVVIQEIKTLSDVCRQ---------LTVLDQTGRIVIKLMGKQYVTQIFKKG 312
Query: 305 QEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDF-AEAHELREWFDSG----- 358
+ ++ G L+ K+ + + + TI + + D+ E LR+W
Sbjct: 313 EIIICKG----LTYKTQQNFAYLTSNYNTI----ILNDQDYNNEVKSLRDWLQEKDIDHI 364
Query: 359 ---GKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSF 415
KN V++ ++ + V + NE G+S+ + + V ++T + F
Sbjct: 365 MKPSKNCLKVNLE----------QLEECVLKKLNE--GKSKNNEQMIVIGYLTGM--SIF 410
Query: 416 CYTACPLMIGDRQCNKKVTQSGNR--WQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTA 473
Y CP +C+ K+ + R ++C +C E + +++ I D+ T
Sbjct: 411 TYPRCP----SNRCHSKMEKVPQRDTYRCKKCYVENNSPQMSFIMNVTIMDEHTKIEATV 466
Query: 474 FQESGEEILGCPAKE 488
F + ++LG A E
Sbjct: 467 FDDYAVKLLGLSADE 481
>gi|290990877|ref|XP_002678062.1| single stranded DNA binding, replication factor-a protein
[Naegleria gruberi]
gi|284091673|gb|EFC45318.1| single stranded DNA binding, replication factor-a protein
[Naegleria gruberi]
Length = 1043
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 11/97 (11%)
Query: 116 IPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGE---------IR 166
IP + L+P W IK +V K + + + N RG G+V + + D G+ ++
Sbjct: 541 IPFSQLDPVLDDWCIKVKVIKKHNEKSWANERGSGRVAAITIADELSGDMSLSSKQNKVK 600
Query: 167 VTCFNAVVDRFYEIIEVGRVYLISKGSL--KPAQKNF 201
+ FN ++ FY+ +E G Y ++KG L KP + F
Sbjct: 601 LIMFNDCINEFYDQMEEGESYYVNKGHLIKKPHEDFF 637
>gi|302781270|ref|XP_002972409.1| hypothetical protein SELMODRAFT_412779 [Selaginella moellendorffii]
gi|300159876|gb|EFJ26495.1| hypothetical protein SELMODRAFT_412779 [Selaginella moellendorffii]
Length = 158
Score = 56.2 bits (134), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 411 KSDSFCYTACPLMIGDRQCNKKVTQ-SGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLT 469
++ F Y AC ++ RQC KKVTQ S + WQC+ C + D D +L I D T
Sbjct: 83 QTGDFYYPACVKVVNGRQCGKKVTQASESMWQCNSC--DTDSGDALHLC---ILDSTAHI 137
Query: 470 WVTAFQESGEEILGCP 485
W AF ++ EI+G P
Sbjct: 138 WAVAFDDAANEIIGMP 153
>gi|391348893|ref|XP_003748675.1| PREDICTED: uncharacterized protein LOC100908191 [Metaseiulus
occidentalis]
Length = 292
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 104/240 (43%), Gaps = 23/240 (9%)
Query: 130 IKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLI 189
++ RV +K R + G++FSF ++DS +I V + Y+ I VG Y +
Sbjct: 52 VQGRVKSKTPARSWQRDGSRGEIFSFIVVDS-TAQINVIVAGEDCENVYKQINVGECYKL 110
Query: 190 SKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSI 249
S KP + + +E+ L S ++ D +P++ + I+EI+S+
Sbjct: 111 SAFRQKPCNPKYKVTDHHFELQLSKISKIEEVPGND--LPRENVTSITIAEIKSSSLKEN 168
Query: 250 VDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLW----GDFCNKEGQKLQ 305
V + IV V+ ++G Q++ L+D + R + L LW G+ +EG+
Sbjct: 169 VSINFIVYEVSEPQTFSCRDGETRQKQNDVLEDDTKRIITLNLWSENVGELDGQEGR--- 225
Query: 306 EMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFIN----PDFAEAHELREWFDSGGKN 361
+++++ V ++ GK T S + + PD EL W++ G N
Sbjct: 226 ---------AINIENVSVREYKGKKNLTPTSGTAYKSARECPDDDRLSELTVWWEKDGYN 276
>gi|38346906|emb|CAE03875.2| OSJNBb0015N08.3 [Oryza sativa Japonica Group]
Length = 696
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 81/401 (20%), Positives = 152/401 (37%), Gaps = 80/401 (19%)
Query: 103 HGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDG 162
HG + + IIPIA L P + + I R++ + R N + K LLD G
Sbjct: 232 HGQLYVAISRMNIIPIAELRPGRYDYMICVRISRIWEFRG-TNEDDNIKHLDLVLLDQKG 290
Query: 163 GEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCT 222
I + + ++ G + ISK ++ A+ ++
Sbjct: 291 DAIYAEIPPDAIPLLNQYLQEGNIVYISKITVNNAKPSYRA------------------- 331
Query: 223 EEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKD 282
VDVIG +I+V+ + I + RRI+ L+D
Sbjct: 332 ---------------------------VDVIGKIIAVSNAAMISTSSSDYRMRRIVKLQD 364
Query: 283 TSGRSVELTLWGDFCNK-EGQKLQEMVD----VGFFPVLSVK--SGKVNDFSGKSI---- 331
SG++++L+L G + +G+ + E+ + F S+K G SG +
Sbjct: 365 LSGKTIDLSLSGKRAVEFDGETILEVGQNNHIIAIFVGTSMKILKGTYEFLSGTTACRWY 424
Query: 332 ---GTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIK 388
IP ++F A +++ + ++ + R I HKT++++K
Sbjct: 425 INENDIPEIKMFQKCLPPHADPIQKLYLQSDED-----MQRSIE--------HKTLAELK 471
Query: 389 NEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQE 448
+ + I + ++CY AC L CN K+ G+ +C + N
Sbjct: 472 EIDPFVDKDEKYQCTATIIGIQERKTWCYQACKL------CNCKMIWDGSILKCKKENCP 525
Query: 449 IDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKEL 489
+ +Y+Y + D T + F++ G E++G A+ +
Sbjct: 526 CRQYEYKYKIPFIANDGTASLELVLFEKKGTELIGRTAETM 566
>gi|413922380|gb|AFW62312.1| hypothetical protein ZEAMMB73_585961 [Zea mays]
Length = 482
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 68/330 (20%), Positives = 133/330 (40%), Gaps = 46/330 (13%)
Query: 181 IEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISE 240
++ ++ ++ K + A+ +F + ++ I L + ++ E+ PK F E
Sbjct: 17 LQESKILIMRKIYVDNAKLSFKPVHGKYMIRLHPKTLLEEVNEDPQDFPKYTFHLTPFPE 76
Query: 241 IESAENNS--IVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWG---- 294
+ E N+ +DVIG + +++ + P +G+ +R+++L D G +E++LWG
Sbjct: 77 LPQLEGNNEYFIDVIGCITALSDATPFQTSSGIVRMKRLIHLVDLRGNKIEVSLWGRRAE 136
Query: 295 DFCNKEGQKLQEMVDV-GFFPVLSVKS--GKVNDFSGKSIGTIPSTQLFINPDFAEAHEL 351
+F ++ K EM V F SVKS G SG + + + +IN E HE+
Sbjct: 137 EFPGQQVFKASEMNHVIVIFVGTSVKSYRGSPPFLSGTA-----ACRWYIN--LPEIHEI 189
Query: 352 REWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIK 411
++ S G+ + I K Q NE + E+ ++ ++ F
Sbjct: 190 NTFYASIGEQYQS---------------IQKLHIQTMNEMQNKIEQKTFLEMKLVDPF-- 232
Query: 412 SDSFCYTACPLMI------------GDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQ 459
D C +++ G +CN G + C + + + +RY +
Sbjct: 233 DDMSKRFECTMIVTRIADNKPWFYQGCTKCNTSTRYEGKTYICKQGHIS-SQMVHRYKIS 291
Query: 460 AQIQDQTGLTWVTAFQESGEEILGCPAKEL 489
D T F E ++G ++L
Sbjct: 292 LYATDGTYELEFVLFDERATSLIGKTVEKL 321
>gi|357493169|ref|XP_003616873.1| hypothetical protein MTR_5g085220 [Medicago truncatula]
gi|355518208|gb|AES99831.1| hypothetical protein MTR_5g085220 [Medicago truncatula]
Length = 286
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 110/253 (43%), Gaps = 32/253 (12%)
Query: 118 IAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDL--LDSDGGEIRVTCFNAVVD 175
I+ ++P + W + RV + Y N + FS DL +D G I + ++
Sbjct: 8 ISNVSPRKQSWTLVVRVVPAWFGKDYKNKKLS---FSMDLVLIDRKGDRIGASIRRILIY 64
Query: 176 RFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSF 235
+F E ++ G V+ IS + ++ +NE+++ + V L + +P +SF
Sbjct: 65 KFKEQLQEGMVFTISSFIVASNSGSYRPSRNEYKLNFTINTKVKL--SKTVLVPTNVYSF 122
Query: 236 RHISEI--ESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLW 293
++ ES +NN +VDVIG++I V G+E + + S + TL+
Sbjct: 123 TPAPDVFNESYDNNCLVDVIGVMIGV----------GVERE-----YERDSTYCFKCTLF 167
Query: 294 GDFCNKEGQKLQ--EMVDVGFFPVLSVKSGKVNDFSGKSI--GTIPSTQLFINPDFAEAH 349
G++ L E +V V+++ KV F GK ST++ N E
Sbjct: 168 GEYVEDMNSFLSSGESQNV----VVAIMLTKVKLFQGKPTLQNAFSSTRITFNSKIGETK 223
Query: 350 ELREWFDSGGKNA 362
ELR+ F S N+
Sbjct: 224 ELRKSFLSANTNS 236
>gi|89257630|gb|ABD65118.1| hypothetical protein 31.t00031 [Brassica oleracea]
Length = 467
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 75/322 (23%), Positives = 127/322 (39%), Gaps = 33/322 (10%)
Query: 248 SIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEM 307
++ DVIG ++ + V I+ NG +T++ + L++ + + + LWG F +Q
Sbjct: 81 ALKDVIGQIVEYS-HVEIVSVNGKDTEKITVELRNENDVRLTIVLWGKFAMNVSDAIQLR 139
Query: 308 VDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSI 367
D VL KV + + INP E G A V
Sbjct: 140 ADHAVVCVLRFGKIKVWKEDRSVSNAYNVSDIAINPSMNEVQAFLALLPKDGLPLAIVE- 198
Query: 368 SREIAAGGAKNE-----IH---KTVSQIKNEGLGRSEKPDWVTVRAFITFIKSD-SFCYT 418
++ + +E IH KT+S++ S + + V I I+SD + Y
Sbjct: 199 AKALPMVSMISEKEDFFIHTPRKTISEVL-----ESRQTERCIVMCTIAAIESDMGWFYL 253
Query: 419 ACPLMIGDRQCNKKVT-------QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWV 471
+C + C+KKV G ++ C +C + RY L + D T T
Sbjct: 254 SC------KVCSKKVQTVPNDNDDGGFKYFCTKCKVYTPKMLPRYKLHLVVLDNTSNTKF 307
Query: 472 TAFQESGEEILGCPAKELY-MLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELY---GD 527
F G ++L P EL + E+Q+ + + V YLF++ I++E Y D
Sbjct: 308 LLFDNLGLQLLNQPCIELTGKVTDEVQNPDALPIALTNLVGKTYLFKIVIEKENYLYXHD 367
Query: 528 EQRVKITVIRADQVNYSSESRY 549
+V + AD +N + Y
Sbjct: 368 TYKVLKIITNADMINEFDVNHY 389
>gi|218198314|gb|EEC80741.1| hypothetical protein OsI_23219 [Oryza sativa Indica Group]
Length = 667
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 71/292 (24%), Positives = 125/292 (42%), Gaps = 33/292 (11%)
Query: 244 AENNSIVDVIGIVISVNP-SVPILRKNGMETQRRILNLKDTSGR-----SVELTLWGDFC 297
AE +DVIG++ + P +L KN ++ R+ N+++ V++TLWGD
Sbjct: 48 AETCLYLDVIGLLSGMKPIEQRMLGKNT--SRERVCNMREIELLLLEGEKVKITLWGDI- 104
Query: 298 NKEGQKLQEMVD---VGFFPVLSVKSGKVNDFSGK-SIGTIPSTQLFINPDFAEAHELRE 353
L MVD +G V V ++ S G ST++F++ + + E+
Sbjct: 105 ------LANMVDDDLLGKQTVFIATGLLVKEYEKLLSFGVTSSTEVFLDMEIPASMEILS 158
Query: 354 WFDSGGKNAATVSISREIAAGGAKNEI----HKTVSQIKNEGLGRSEKPDWV-TVRAFIT 408
++ + I + + G E KT+ +I ++ +++ TV+A I
Sbjct: 159 RHNA--EKVLPTMIEVDASTQGTIEEQMFYNRKTLKEITELRYSNIQQKEFICTVKAKIE 216
Query: 409 FIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGL 468
IKS ++ Y +C +C + N + C+ C +E RY++ +I D T
Sbjct: 217 EIKSRNWWYMSCD------KCFCGTRKESNVYICNSCGKEAVNPKPRYVINLEISDHTTR 270
Query: 469 TWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKI 520
T T F E E I G + + + Q D+ + IR +FRLK+
Sbjct: 271 TTCTIFNEEAERIFGHKSVSTMLEEQNGQIDM-IPDTIRQICGRILIFRLKL 321
>gi|57222455|gb|AAS01985.2| expressed protein, with alternative splicing isoforms [Oryza sativa
Japonica Group]
Length = 420
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 76/298 (25%), Positives = 119/298 (39%), Gaps = 36/298 (12%)
Query: 249 IVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGR-SVELTLWGDFCNK-EGQKLQE 306
I D IGI+ ++ P + M + +LN T+GR +V + LWG + + LQ+
Sbjct: 43 ISDAIGIMTAIGPVQTVSYAGVM---KAVLNDHITNGRETVVVALWGPHATQFHAENLQQ 99
Query: 307 MVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVS 366
D G +L V G F + + ST P+ A E S N V
Sbjct: 100 QADNGHVVMLFV--GLTVKFRDRQLALQGSTVCRWYPN-APIQETISLISSLHGNPQVV- 155
Query: 367 ISREIAAG-GAKNEIHKTVSQI----KNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACP 421
R I A G K I+ VS I +E LG S +V + ++ + Y AC
Sbjct: 156 --RMIEANFGQKEAINVKVSDICDLNPHEALGNS----YVVNIIIRDLVPAEPWWYIAC- 208
Query: 422 LMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQA-----QIQDQTGLTWVTAFQE 476
+ + GN ++C RC+ + E YR ++ DQ T F E
Sbjct: 209 -----STYKRGTAREGNAYKCPRCSTDAIETRYRVVIMGIDPSDLANDQAKAAEFTFFGE 263
Query: 477 SGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKIT 534
GE+++G P L + +D V I++ QY+ R + G QR +++
Sbjct: 264 IGEQLIGRPVLNLVASVHGARDIVP--PEIKAIFGRQYVIRTSVSR---GSLQRNRVS 316
>gi|358343841|ref|XP_003636004.1| Replication protein A1-like protein [Medicago truncatula]
gi|355501939|gb|AES83142.1| Replication protein A1-like protein [Medicago truncatula]
Length = 540
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 110/246 (44%), Gaps = 20/246 (8%)
Query: 117 PIAAL---NPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAV 173
P+A L N + W + +VT K ++ + + ++D+ G +I+V A
Sbjct: 4 PVAFLRDINEKKDFWKVAVKVTDK-----WSVVKDGMEHMEMVIVDAKGTDIQVIIPTAY 58
Query: 174 VDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEI-FLEATSTVDLCTEEDDSIPKQQ 232
+ ++I+V Y +S + P F N++++ + T+ VD + IP
Sbjct: 59 RAEYEKLIKVNSTYTLSNFQVFPNDLVFKASDNKYKLKWTGGTTAVDANVHD---IPLPN 115
Query: 233 FSFRHISEIESAE--NNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVEL 290
F+ ++EI + + + +V VIG V + ++ G + Q L +KD S S+
Sbjct: 116 MKFKPLAEIIAGKWRADLLVHVIGYVHEIG-YCQVMAGTGKKLQVNFL-MKDLSDISLNC 173
Query: 291 TLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVND---FSGKSIGTIPSTQLFINPDFAE 347
TLW D+ K + E + G V+ +K GK+ + + T +T+L IN D AE
Sbjct: 174 TLWEDYAAKFIKFNNENKETGPIIVM-LKYGKIKEEGKYPLSVTNTYSATKLLINEDIAE 232
Query: 348 AHELRE 353
RE
Sbjct: 233 IKRFRE 238
>gi|440799699|gb|ELR20743.1| leucine rich repeat-containing protein [Acanthamoeba castellanii str.
Neff]
Length = 1419
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 26/145 (17%)
Query: 400 WVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQ-----------------SGNRWQC 442
+ +V + I++ Y ACP +C+KKV + RW C
Sbjct: 1242 YASVVCTVNEIRTSGMWYPACPW----PKCHKKVEEYHGGDEGYDGEEEGQQHHQKRWYC 1297
Query: 443 DRCNQEIDECDY--RYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDV 500
CN+ + Y RY+ +I D TG W+ AF E+ +LG A+EL LK D+
Sbjct: 1298 KTCNR-VYAGRYVNRYMASLRIVDHTGDLWLRAFDEAAAPLLGTSAQELSQLKDF--DET 1354
Query: 501 RFGEIIRSRVFNQYLFRLKIKEELY 525
F + ++ ++ R+K+ +E Y
Sbjct: 1355 LFVDKVKEAQLQRHEMRVKVVQETY 1379
>gi|340053079|emb|CCC47365.1| conserved hypothetical protein [Trypanosoma vivax Y486]
Length = 578
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 102/239 (42%), Gaps = 29/239 (12%)
Query: 66 FSTPNSGTFRAPNAGSIVRSFQPTVQPPYQPPPNFRNHGPILKNEAPARIIPIAALNPYQ 125
FS + R P+A V +F+PT + P+L I I P
Sbjct: 134 FSLSSRALVRHPDATIRVLAFKPTET----------DGCPMLGIR---HIFSIKGRTPED 180
Query: 126 GRWAIKARVTAKGDLRRYNNAR-GDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVG 184
+ R+ KG LR+++ D VF LDS+G I CF + FY++ + G
Sbjct: 181 S--VVCLRMIWKGKLRKFSTGHSADRFVFGCVALDSEGDAILTECFGSA--PFYDMFDAG 236
Query: 185 RVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTE-EDDSIPKQ---QFSFRHISE 240
++ SL K + ++ + E STV E ++D+ P F + + +
Sbjct: 237 ECVQVTNVSLAHHDKPGHGVRLQIS---EQISTVKRSAEYQNDNFPLHPCFMFGSKAVGD 293
Query: 241 IES-AENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRS--VELTLWGDF 296
E IV V GIV +V PS ++ + G Q ++L L+D + S +E+ LWGD
Sbjct: 294 AAGYVEVGDIVSVEGIVAAVFPSALVVTRRGRVEQSKLL-LQDYTSPSATLEVVLWGDM 351
>gi|62733874|gb|AAX95983.1| hypothetical protein LOC_Os11g13920 [Oryza sativa Japonica Group]
gi|77549546|gb|ABA92343.1| AT hook motif-containing protein, putative [Oryza sativa Japonica
Group]
Length = 2157
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 79/356 (22%), Positives = 139/356 (39%), Gaps = 64/356 (17%)
Query: 130 IKARVTAKGDLRRYNNARGDGKVFSFDL--LDSDGGEIRVTCFNAVVDRFYEIIEVGRVY 187
I ARV+ D N G G +F DL LD G I + +D +++ +VY
Sbjct: 1596 ILARVSRLWDFCDLN---GSGNIFHTDLVLLDQMGNSIHAQIYPPAIDSLRPLLKEQKVY 1652
Query: 188 LISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENN 247
I ++ ++W F E E P FS S+I + +
Sbjct: 1653 YIDSFTV-----------SKWTTFEEYI-------EPAADFPGITFSLTPFSDIPNLVDK 1694
Query: 248 SIV---------DVIGIVISV-NPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGD-- 295
+I DV+G++ V +P+V + ++ +R + + D S ++ +TLWG+
Sbjct: 1695 TIFYVGLYGMQPDVMGVITEVGSPTVVRPKSRNADSLKRTIQICDASNSTMPVTLWGERA 1754
Query: 296 -------FCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPST--QLFINPDFA 346
N + Q +V VG V D++G + S+ + ++N D
Sbjct: 1755 DAFDANSVYNAGQTQAQVIVFVGTL---------VKDYTGLGLTVTGSSPCKWYLNLDIP 1805
Query: 347 EAHELREWFDSGGKNAATVSISREIAAGGAKNEI-HKTVSQIKNEGLGRSEKPDWVTVRA 405
E EL+E F + N VS A G ++ KT+ +I ++ ++
Sbjct: 1806 EVLELKESFSA---NFRPVSWVDNPATGYNQDTAEEKTIQEILALNPHKNRSTRFIVNVT 1862
Query: 406 FITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRC-NQEIDECDYRYLLQA 460
+S+ Y +C R C + G+ ++C C N I + Y+ +L A
Sbjct: 1863 VRRICSENSWWYNSC------RLCYRTSKPYGSSYKCSSCSNIGIPDPRYKVVLIA 1912
>gi|108864598|gb|ABA94881.2| AT hook motif-containing protein, putative [Oryza sativa Japonica
Group]
Length = 2157
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 78/356 (21%), Positives = 139/356 (39%), Gaps = 64/356 (17%)
Query: 130 IKARVTAKGDLRRYNNARGDGKVFSFDL--LDSDGGEIRVTCFNAVVDRFYEIIEVGRVY 187
I ARV+ D N G G +F DL LD G I + +D +++ +VY
Sbjct: 1596 ILARVSRLWDFCDLN---GSGNIFHTDLVLLDQMGNSIHAQIYPPAIDSLRPLLKEQKVY 1652
Query: 188 LISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENN 247
I ++ ++W F E E P FS S+I + +
Sbjct: 1653 YIDSFTV-----------SKWTTFEEYI-------EPAADFPGITFSLTPFSDIPNLVDK 1694
Query: 248 SIV---------DVIGIVISV-NPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGD-- 295
+I DV+G++ V +P+V + ++ +R + + D S ++ +TLWG+
Sbjct: 1695 TIFYVGLYGMQPDVMGVITEVGSPTVVRPKSRNADSLKRTIQICDASNSTMPVTLWGERA 1754
Query: 296 -------FCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPST--QLFINPDFA 346
N + Q +V VG V D++G + S+ + ++N D
Sbjct: 1755 DAFDANSVYNAGQTQAQVIVFVGTL---------VKDYTGLGLTVTGSSPCKWYLNLDIP 1805
Query: 347 EAHELREWFDSGGKNAATVSISREIAAGGAKNEI-HKTVSQIKNEGLGRSEKPDWVTVRA 405
E EL+E F + N +S A G ++ KT+ +I ++ ++
Sbjct: 1806 EVLELKESFSA---NFRPISWVDNPATGYNQDTAEEKTIQEILALNPHKNRSTRFIVNVT 1862
Query: 406 FITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRC-NQEIDECDYRYLLQA 460
+S+ Y +C R C + G+ ++C C N I + Y+ +L A
Sbjct: 1863 VRRICSENSWWYNSC------RLCYRTSKPYGSSYKCSSCSNIGIPDPRYKVVLIA 1912
>gi|38424033|dbj|BAD01693.1| DNA binding protein-like [Oryza sativa Japonica Group]
gi|38637631|dbj|BAD03911.1| DNA binding protein-like [Oryza sativa Japonica Group]
Length = 445
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 102/244 (41%), Gaps = 35/244 (14%)
Query: 130 IKARVTAKGDLRRYNNARGDGKVFSFDL--LDSDGGEIRVTCFNAVVDRFYEIIEVGRVY 187
I ARV+ D N G G +F DL LD G I + +D +++ +VY
Sbjct: 18 ILARVSRLWDFCDLN---GSGNIFHTDLVLLDQMGNSIHAQIYPPAIDSLRPLLKEQKVY 74
Query: 188 LISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENN 247
I +++ A + + + N I +T + E P FS S+I + +
Sbjct: 75 YIDSFTVRYANRTYRPVDNSLMIVFSKWTTFEEYIEPAADFPGITFSLTPFSDIPNLVDK 134
Query: 248 SI--VDVIGIVISV-NPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQ-K 303
+I VDV+G++ V +P+V + ++ +R + + D S GQ +
Sbjct: 135 TIFYVDVMGVITEVGSPTVVRPKSRNADSLKRTIQICDASA---------------GQTQ 179
Query: 304 LQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPST--QLFINPDFAEAHELREWFDSGGKN 361
Q +V VG V D++G + S+ + ++N D E EL+E F + +
Sbjct: 180 AQVIVFVGTL---------VKDYTGLGLTVTGSSPCKWYLNLDIPEVLELKESFSANFRP 230
Query: 362 AATV 365
+ V
Sbjct: 231 VSWV 234
>gi|413934866|gb|AFW69417.1| hypothetical protein ZEAMMB73_473384 [Zea mays]
Length = 317
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/247 (22%), Positives = 102/247 (41%), Gaps = 28/247 (11%)
Query: 117 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL--DSDGGEIRVTCFNAVV 174
PIA L+P AI+ R+ K + R A DG + +L+ D G I A+V
Sbjct: 5 PIAELDPKSTNAAIRVRIIRKWEFR---GATNDGPLRHVNLILADEQGTAIHAEIQAALV 61
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
+I++ +VY + + + P++ + + N I + L + + P+ +
Sbjct: 62 ADKGSLIQIDKVYELKRFRVAPSRNYYKPVDNSMMIQFTLYTQAKLVQDPPPTFPRYAYK 121
Query: 235 FRHISEIESAENNS--IVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTL 292
I + +N ++DV+GI+ + S+ + N R I LKD + S ++TL
Sbjct: 122 LTSFENIGNNVDNKTYLIDVLGILTEIG-SLHHVGYNNSNIIRDIF-LKDINNTSTKVTL 179
Query: 293 WG---------DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKS-IGTIPSTQLFIN 342
WG + C++ K ++ VG F G++ + + + N
Sbjct: 180 WGHQASSFSVDNNCDENDNKPVVVLFVGCL---------AKRFKGEAYLSATAACTWYFN 230
Query: 343 PDFAEAH 349
PD EA
Sbjct: 231 PDIPEAQ 237
>gi|66771039|gb|AAY54831.1| IP08052p [Drosophila melanogaster]
Length = 189
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 90/202 (44%), Gaps = 17/202 (8%)
Query: 157 LLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATS 216
LLD + GEI F + Y I+ G VYLIS ++ A ++ N ++F A +
Sbjct: 3 LLD-ESGEITGLVFADYDNGLYGQIQTGLVYLISGFEVEKAISSYKVSDNPNQLFFCANT 61
Query: 217 TVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRR 276
++L D IP++++SF + ++ S + VD IGI V +L G R
Sbjct: 62 VLELSAC--DRIPREKYSFLPLLKVSSKRDQEPVDAIGICAEVG----MLENRGGCFIRE 115
Query: 277 ILNLKDTSGRSVELTLW-GDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIP 335
+L L D V L LW + N GQ+ +V G L K+N
Sbjct: 116 LL-LVDPDFHPVILNLWQKEAVNFVGQRDDVIVVKGARAQLHNNEMKLN--------ASW 166
Query: 336 STQLFINPDFAEAHELREWFDS 357
T + INPD +A + EW+++
Sbjct: 167 YTNMQINPDIPDATGMLEWYNN 188
>gi|414589506|tpg|DAA40077.1| TPA: hypothetical protein ZEAMMB73_356509 [Zea mays]
Length = 388
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 83/188 (44%), Gaps = 9/188 (4%)
Query: 112 PARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL--DSDGGEIRVTC 169
P + + L+P I+ RV K + R A DG + +L+ D G I
Sbjct: 31 PEFVKTLKELHPQSTNAIIRVRVIRKWEFR---GATNDGPLQHINLVLADEQGTPIHAEI 87
Query: 170 FNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIP 229
A+ +IE+ +VY + + + P++ F + N + I + + + P
Sbjct: 88 AAALAVDKGSMIEIEKVYELKRFRVTPSRNYFKPVDNNFMIQFTLYTQAKVVKDPPQVFP 147
Query: 230 KQQFSFRHISEIESAENNS--IVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRS 287
+ + IE +N ++DV+G++ +NP P L T R + +K+TS S
Sbjct: 148 RYIYKLTCFENIEDNIDNRTYLIDVLGMLTQINP--PHLIGYNNSTIIRDIFIKNTSDMS 205
Query: 288 VELTLWGD 295
+++TLWG+
Sbjct: 206 LKITLWGN 213
>gi|348687513|gb|EGZ27327.1| hypothetical protein PHYSODRAFT_376071 [Phytophthora sojae]
Length = 68
Score = 54.3 bits (129), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 36/68 (52%)
Query: 128 WAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVY 187
WA RV ++ +R Y N RG G++ + D+ G IR+T FN V FY+++ G
Sbjct: 1 WAFVCRVLSRSPIREYTNLRGGGRLIEIYVGDAAGDTIRITLFNEAVTAFYDVVSPGSTC 60
Query: 188 LISKGSLK 195
S G +K
Sbjct: 61 YFSAGRIK 68
>gi|194764877|ref|XP_001964554.1| GF19997 [Drosophila ananassae]
gi|190614826|gb|EDV30350.1| GF19997 [Drosophila ananassae]
Length = 265
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 110/243 (45%), Gaps = 23/243 (9%)
Query: 122 NPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEII 181
+P+ I ARV K ++ Y N G +F L D + GEI T N + + F++ I
Sbjct: 34 HPWDSTSFIIARVVHKTEITSYENETS-GNIFLIYLRD-ESGEIIATVHNELCNTFFKQI 91
Query: 182 EVGRVYLISKGSLKPAQKNFNHLKNEWEI-FLEATSTVDL--CTEEDDSIPKQQFSFRHI 238
E +V + + A K + + + + I F ++T + + + +IP +++ + I
Sbjct: 92 ETDQVCFFADFEVNWATKKYVLMPHSFNINFTQSTKVLPIGSLNQNITAIPGIRYNLQPI 151
Query: 239 SEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRI--LNLKDTSGRSVELTLWGDF 296
I + VD IGI V+ L K G R I ++ D G + L LW D
Sbjct: 152 EVIHKMCDGEPVDTIGICGKVDE----LAKRGGYYIREIELMDYDDYDG-VITLNLWNDA 206
Query: 297 C-NKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKS-IGTIPSTQLFINPDFAEAHELREW 354
N +G++ ++ VK +V + + K+ I +++ INP+ EA LREW
Sbjct: 207 AINFDGKEDD---------IILVKGARVREHNLKNKINFDWFSKMEINPNIKEAKSLREW 257
Query: 355 FDS 357
++
Sbjct: 258 LEN 260
>gi|413948244|gb|AFW80893.1| hypothetical protein ZEAMMB73_324862 [Zea mays]
Length = 455
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 87/208 (41%), Gaps = 18/208 (8%)
Query: 117 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL--DSDGGEIRVTCFNAVV 174
PI LNP + I+ RV K + R A DG + +L+ D G I A+
Sbjct: 5 PITELNPQKINVVIRVRVIRKWEFR---GATNDGPLRHINLILADEQGTAIHAEIPAALA 61
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
+I++ +VY I + P++ F + N I + + + P ++
Sbjct: 62 TEKGSLIQIDKVYEIRHFRVMPSRGYFKPVHNNLMIQFTLYTQAKVVNDPPHIFPIYIYN 121
Query: 235 FRHISEIESAENNS--IVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTL 292
++E +N ++DVIG++ + P + + R + +KD S S+++TL
Sbjct: 122 LTSFQKVEENVDNRNYLIDVIGMLTQI--GAPHVAGYNNSSIVRDIFIKDISDASLKITL 179
Query: 293 WGD---------FCNKEGQKLQEMVDVG 311
WGD CN+ K ++ VG
Sbjct: 180 WGDQASGFSIDNVCNESNNKPIVIMFVG 207
>gi|333988515|ref|YP_004521122.1| Replication factor-A domain-containing protein [Methanobacterium
sp. SWAN-1]
gi|333826659|gb|AEG19321.1| Replication factor-A domain protein [Methanobacterium sp. SWAN-1]
Length = 798
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 415 FCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAF 474
Y CP CNK+VT S N + CD C +EI+ +Y ++ ++D TG T F
Sbjct: 678 ILYEMCP------NCNKRVTFSDNAYICDICGEEIENPNYLMIISCVVEDDTGTMRTTFF 731
Query: 475 QESGEEILGCPAKEL 489
+ + EE++G E+
Sbjct: 732 RTAAEELIGMNTDEV 746
>gi|297790618|ref|XP_002863194.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297309028|gb|EFH39453.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 508
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 91/442 (20%), Positives = 173/442 (39%), Gaps = 68/442 (15%)
Query: 121 LNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEI 180
LNP + W ++ +V RR N+ G+ F L D +G +I+ + + V D+F +
Sbjct: 13 LNPSKYEWVVETKVLCSWT-RRLENS---GRRLEFVLADREGNKIQCSLWGEVYDKFVSV 68
Query: 181 IEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISE 240
I G + I + + + +++ L +T+ D++ Q F F
Sbjct: 69 IVSGSWFRIKDFKVVHQTGDCRATLHRYKMILLKNTTIVKIPGIDNN---QFFDFVDFGS 125
Query: 241 I--ESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCN 298
I ++ +V+VIG +++V P + ++ G T + + L+D + TLW DF
Sbjct: 126 ILDRRYSDDFLVNVIGQIVNVGP-IEDIKIRGKSTPKLDVELRDRGNVRLICTLWADFA- 183
Query: 299 KEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSI--GTIPSTQLFINPDFAEAHELREWFD 356
K+ + E V ++ +V ++ G + +T++ ++P E R
Sbjct: 184 KQVKVYTEANPAAV--VCVIRCAQVKEWKGNWTISNAMGATRVLLDPPGVFVDEFRSGLP 241
Query: 357 SGGK-----------NAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRA 405
+ G +TVSI + K + V ++ EG+ V +
Sbjct: 242 TDGVVLTNHDNSELFAGSTVSIRDQFLVKNHKRTVRDIVEALE-EGMC-------VAMVI 293
Query: 406 FITFIKSDSFCYTACPLMIGDRQCNKKV----TQSGN-----RWQCDRCNQEIDE----- 451
+ ++ + Y +C + CNK V SG+ + C C++++
Sbjct: 294 VGSVERTSKWYYVSC------KMCNKSVEPYPENSGDDGKPPLYYCGVCDKDVSAVVFSF 347
Query: 452 -------CD-----YRYLLQAQIQDQTGL-TWVTAFQESGEEILGCPAKELYMLKYELQD 498
C +RY L ++ D T F G +L A+ELY E
Sbjct: 348 RARLFIICSGITVCFRYRLVLEVSDATNYKARFLLFDAMGSTLLRRTAQELYNAVSENDP 407
Query: 499 DVRFGEIIRSRVFNQYLFRLKI 520
+ E I + V ++LF++ I
Sbjct: 408 SILPSE-IGALVGRRFLFKVSI 428
>gi|414883616|tpg|DAA59630.1| TPA: hypothetical protein ZEAMMB73_011121 [Zea mays]
Length = 289
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 108/255 (42%), Gaps = 42/255 (16%)
Query: 117 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL--DSDGGEIRVTCFNAVV 174
PI L+P I+ RV K + R A DG + +L+ D G I A+
Sbjct: 5 PITELDPRNINVVIRVRVIRKWEFR---GATNDGPLRHINLILADEQGTAIHAEIPAALA 61
Query: 175 DRFYEIIEVGRVYLI-------SKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDS 227
+I++ +VY I S+ KP Q N+L ++ ++++A + +
Sbjct: 62 TEKGSLIQIEKVYEIRRFRVVSSRSYFKPVQ---NNLMIQFTLYIQA----KVVKDPPHI 114
Query: 228 IPKQQFSFRHISEIESAENNS--IVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSG 285
P ++ +IE + +N ++D IG++ + P + + R + +K+ S
Sbjct: 115 FPIYIYNLTSFEKIEESVDNKNYLIDAIGMLTQI--GAPHVAGYNNSSIVRDIFIKNISD 172
Query: 286 RSVELTLWGD---------FCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKS-IGTIP 335
S+++TLWGD CN+ K + + FF L+ F G+S +
Sbjct: 173 ASLKITLWGDQASGFSTDNVCNQGNNK---PIVIMFFGCLA------KQFKGQSYLSGTA 223
Query: 336 STQLFINPDFAEAHE 350
+T + NPD EA E
Sbjct: 224 ATTWYFNPDIPEAQE 238
>gi|413937763|gb|AFW72314.1| hypothetical protein ZEAMMB73_397324 [Zea mays]
Length = 564
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 78/382 (20%), Positives = 151/382 (39%), Gaps = 43/382 (11%)
Query: 121 LNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSD--GGEIRVTCFNAVVDRFY 178
L Y+ I+ V+ K ++ A G + D++ SD G I + +
Sbjct: 9 LTTYKKHAIIQVHVSRKWS---FHGATEKGPLQHIDMVLSDCKGNSIYAEIPANLAEEKG 65
Query: 179 EIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHI 238
+IE ++Y IS+ + A+ + + + I + + + + P +
Sbjct: 66 ALIETNQIYDISRFRVTAAKTAYKPIDGDKMIQFTTYTIIKPASNPPPTFPLYIYQLTPF 125
Query: 239 SEIESA--ENNSIVDVIGIVISVNPSVPILRKNGM--ETQRRILNLKDTSGRSVELTLWG 294
EIES +DV+G + + ++ I+ G T R + ++D S +++++TLW
Sbjct: 126 DEIESQIQHKTKFLDVLGTITEIT-ALKIVHIEGQLSPTIIRDVMIEDLSRKTLKITLWA 184
Query: 295 DFCNKEGQKLQEMVD-VGFFPVLSVKSGKVNDF-SGKSIGTIPSTQLFINPDFAEAHELR 352
+Q++ D V P+L++ G + F G + + + NP EA +
Sbjct: 185 K--RATSFTIQDVYDPVSKKPILALFVGCLPKFYKGVYLSGGAACHWYFNPTIPEAEAYQ 242
Query: 353 EWFDSGGKNAATVSISREIAAGGAKNEI------HKTVSQIKNEGLGRSEKPDW-----V 401
GG+ T+ + A HKT+ Q+ + + PD V
Sbjct: 243 N--RRGGE---TIQLHLPTQPKHALQTFQPPTIEHKTLEQLLT--MNPYDYPDTGYECTV 295
Query: 402 TVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQ 461
T+ T S+++ Y +C +C +K T + CD C + D ++Y L+ +
Sbjct: 296 TITEIDT---SNTWWYPSC------TKCGRKTTPHNTAYYCDWC--KWDGYKFKYKLKFR 344
Query: 462 IQDQTGLTWVTAFQESGEEILG 483
D T + + F I+G
Sbjct: 345 ASDATAMAQMFCFDNIARYIVG 366
>gi|361069979|gb|AEW09301.1| Pinus taeda anonymous locus UMN_2879_01 genomic sequence
gi|383157669|gb|AFG61167.1| Pinus taeda anonymous locus UMN_2879_01 genomic sequence
gi|383157671|gb|AFG61168.1| Pinus taeda anonymous locus UMN_2879_01 genomic sequence
gi|383157673|gb|AFG61169.1| Pinus taeda anonymous locus UMN_2879_01 genomic sequence
gi|383157675|gb|AFG61170.1| Pinus taeda anonymous locus UMN_2879_01 genomic sequence
gi|383157677|gb|AFG61171.1| Pinus taeda anonymous locus UMN_2879_01 genomic sequence
gi|383157679|gb|AFG61172.1| Pinus taeda anonymous locus UMN_2879_01 genomic sequence
gi|383157681|gb|AFG61173.1| Pinus taeda anonymous locus UMN_2879_01 genomic sequence
gi|383157683|gb|AFG61174.1| Pinus taeda anonymous locus UMN_2879_01 genomic sequence
Length = 94
Score = 53.5 bits (127), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 54/95 (56%), Gaps = 7/95 (7%)
Query: 316 LSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAG- 374
++V++ KV+D+SG S+ T + L INPD A +LR W+D+ GK ++ ++ + +G
Sbjct: 1 IAVRAAKVSDYSGVSLSTTGRSTLMINPDLPVAQKLRSWYDTDGKGSSMAPVASTLPSGT 60
Query: 375 ---GAKNEIHKT--VSQIKNEGLGRSEKPDWVTVR 404
G+++ + +SQI +G KP + VR
Sbjct: 61 PRAGSRSLYSERAFLSQIVEPSVGEG-KPAYFNVR 94
>gi|57899579|dbj|BAD87158.1| DNA binding protein-like [Oryza sativa Japonica Group]
gi|57899664|dbj|BAD87333.1| DNA binding protein-like [Oryza sativa Japonica Group]
Length = 1083
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/161 (19%), Positives = 78/161 (48%), Gaps = 5/161 (3%)
Query: 140 LRRYNNARGDGKVFSFDLL--DSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPA 197
L + + + K++ DL+ D GG I F ++ F ++ G+VY + +K +
Sbjct: 538 LWEFTDCKDATKIYHIDLVLVDEKGGSIHAQIFPLLLQVFKPLLTEGKVYYLDSYRVKTS 597
Query: 198 QKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIES--AENNSIVDVIGI 255
K++ + N + ++V+ C + + P +S ++E+ + +N S VDVIG+
Sbjct: 598 NKSYRPVANPLMMTFTKWTSVEQCLDVPFNFPTVVYSLTPLNEVSNFVDKNESFVDVIGV 657
Query: 256 VISVN-PSVPILRKNGMETQRRILNLKDTSGRSVELTLWGD 295
+ ++ P++ + + +R + + + ++ ++LW +
Sbjct: 658 ITEISTPTMLRPKSRDASSLKRTVQICYANNSTLNVSLWAE 698
>gi|408381003|ref|ZP_11178553.1| Replication factor-A domain-containing protein [Methanobacterium
formicicum DSM 3637]
gi|407816268|gb|EKF86830.1| Replication factor-A domain-containing protein [Methanobacterium
formicicum DSM 3637]
Length = 791
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 102/251 (40%), Gaps = 49/251 (19%)
Query: 242 ESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCN--- 298
E E + V + G V+SV + +G R + + D SG V ++LW D N
Sbjct: 533 ELVEGDRDVSLFGRVLSVAEPTQFTKSDGSTGIVRSMEIADDSG-VVRVSLWDDQANTSF 591
Query: 299 KEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSG 358
KEG+ ++ +++ +VN + ++ T + P+ EA
Sbjct: 592 KEGEAVK------------IENPRVNLRNNNIELSVGRTTIITKPEEDEA---------- 629
Query: 359 GKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDW-VTVRAFITFIKSDSFCY 417
+ + +EI + KN +G E+ D + V + I+ +
Sbjct: 630 --------------SVPSLDEIEGKLYPSKN--IGDIEEGDQSIKVSGEVVDIRGSKILF 673
Query: 418 TACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQES 477
CP CNK+V N + CD C +EI + + ++ ++D TG +T F+++
Sbjct: 674 EMCP------NCNKRVNWVDNAYICDICGEEIKKPNMLMIISLMLEDDTGTISITFFRKA 727
Query: 478 GEEILGCPAKE 488
EE+LG E
Sbjct: 728 AEEVLGMTTAE 738
>gi|357519361|ref|XP_003629969.1| Replication factor A protein [Medicago truncatula]
gi|355523991|gb|AET04445.1| Replication factor A protein [Medicago truncatula]
Length = 296
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 114/240 (47%), Gaps = 11/240 (4%)
Query: 118 IAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRF 177
I+ ++P + W + RV + Y N + + F L+D G +I + ++ +F
Sbjct: 8 ISNVSPRKQSWTLVVRVVRAWFGQDYKNKKLPFSM-EFVLIDRKGDQIGASIRRTLIYKF 66
Query: 178 YEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRH 237
E ++ G V+ IS + ++ NE+++ + V L + +P +SF
Sbjct: 67 KEQLQEGMVFTISSFDVASNSGSYRPSHNEYKLNFTINTKVKLS--KTILVPINVYSFTP 124
Query: 238 ISEI--ESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGD 295
++ ES +NN +VDVIG++I V R+ G +T+ ++ L D++G + TL+G+
Sbjct: 125 APDVFNESYDNNYLVDVIGVIIGVGVEREYERE-GTKTKMNVIEL-DSNGYRFKCTLFGE 182
Query: 296 FCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSI--GTIPSTQLFINPDFAEAHELRE 353
+ + L D V+++ KV F GK + ST++ NP+ E ELR+
Sbjct: 183 YVEELNSLLSS--DESQNVVVAIMLTKVKLFQGKPALQNALSSTRITFNPEIGETKELRK 240
>gi|242093306|ref|XP_002437143.1| hypothetical protein SORBIDRAFT_10g021935 [Sorghum bicolor]
gi|241915366|gb|EER88510.1| hypothetical protein SORBIDRAFT_10g021935 [Sorghum bicolor]
Length = 400
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 73/330 (22%), Positives = 128/330 (38%), Gaps = 34/330 (10%)
Query: 157 LLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATS 216
L D+ G + ++ ++EV Y+ISK + PA+ + I +
Sbjct: 27 LADARGDAMYAEIPQEIIHTLDPLLEVDNTYVISKFRVNPAKACYKPFSGHLMIEFTEFT 86
Query: 217 TVDLCTEEDDSIPKQQFSFRHISEIESAENNS--IVDVIGIVISVNPSVPILRKNGMETQ 274
++ L + PK ++ +I A+ + D++G + + + K T
Sbjct: 87 SIKLSENVPPTFPKYIYALTSFDKIVPAQGPVPILTDILGYITKYTSATSVTPKGKERTS 146
Query: 275 -RRILNLKDTSGRSVELTLWGDFC---------NKEGQKLQEMVDVGFFP--VLSVKSGK 322
R + +KD S +++TLWGD N+E K + VGF P S +
Sbjct: 147 ILREIFVKDMSDNELKITLWGDHAINFTIDHLNNQENPKAVIALFVGFIPRKWHSHYAEH 206
Query: 323 VNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISRE-IAAGGAKNEI- 380
SG S + ++NPD EA + F S + I+A +
Sbjct: 207 KPYLSGSS-----GSNYYLNPDIQEALPFYKRFKDEPMYIERPPPSEDNISAQPQDTPLA 261
Query: 381 HKTVSQIKNEGLGRSEKPD-WVTVRAFITFIKSD-SFCYTACPLMIGDRQCNKKV-TQSG 437
KTV+++ + E PD +T I + S+ Y +C + C KK+ Q+
Sbjct: 262 EKTVAELN--AIDPYEFPDEGYKCTVTVTHIPDNISWWYMSC------KPCKKKMDPQAA 313
Query: 438 NRWQCDRCNQEIDECDYRYLLQAQIQDQTG 467
++C +C RYLL +D+T
Sbjct: 314 GGYRCPKCYGT--NALPRYLLNFFAEDETA 341
>gi|297825951|ref|XP_002880858.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297326697|gb|EFH57117.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 395
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 63/125 (50%), Gaps = 8/125 (6%)
Query: 440 WQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELY-MLKYELQD 498
W+CD+CN + + RY L + D TG + + F E+I+G PA +L EL D
Sbjct: 139 WRCDKCNTNVSSVEARYWLHLDVMDNTGESKLMLFDSFVEQIIGIPACDLVDPTTEELDD 198
Query: 499 DVRFGEIIRSRVFNQYLFRLKIKEELYG---DEQRVKITVIRADQVNYSS---ESRYLLD 552
+ +++++ + Y F L ++++ DE +V V+ + +N+ + E Y +D
Sbjct: 199 PLPLPDVVKNIIGKTYQFALCVEQDNISRGNDEYKVS-EVLTSQNLNHPALEPEVDYPVD 257
Query: 553 LISKS 557
L S S
Sbjct: 258 LSSMS 262
>gi|115436702|ref|NP_001043109.1| Os01g0390300 [Oryza sativa Japonica Group]
gi|55297220|dbj|BAD68984.1| DNA binding protein-like [Oryza sativa Japonica Group]
gi|113532640|dbj|BAF05023.1| Os01g0390300 [Oryza sativa Japonica Group]
gi|215736912|dbj|BAG95841.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767124|dbj|BAG99352.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 185
Score = 52.4 bits (124), Expect = 6e-04, Method: Composition-based stats.
Identities = 39/160 (24%), Positives = 74/160 (46%), Gaps = 8/160 (5%)
Query: 130 IKARVTAKGDLRRYNNARGDGKVFSFDL--LDSDGGEIRVTCFNAVVDRFYEIIEVGRVY 187
IKARV+ + D Y++ + K++ DL LD G I V + + + +++ G+VY
Sbjct: 18 IKARVSRQWD---YHDLNDETKIYHTDLVLLDEKGNSIHVQIYPPAMIKLRTLLQEGKVY 74
Query: 188 LISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESA--E 245
S++ A + + + N I +T++ C + D P FS + S
Sbjct: 75 YFDSFSVRYANRTYRPVTNPLMISFTKWTTLEECIDAFDDFPAITFSLTPFQDAPSLVDR 134
Query: 246 NNSIVDVIGIVISVNPSVPILRKN-GMETQRRILNLKDTS 284
N VD++G++ + + + K+ ET +R + + D S
Sbjct: 135 NAFYVDIMGVITEIGATDTLRPKSRNTETLKRTMQIWDAS 174
>gi|357511469|ref|XP_003626023.1| Replication factor A protein [Medicago truncatula]
gi|355501038|gb|AES82241.1| Replication factor A protein [Medicago truncatula]
Length = 526
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 86/385 (22%), Positives = 154/385 (40%), Gaps = 45/385 (11%)
Query: 157 LLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEI-FLEAT 215
L+D G+I+ T ++ + +++ G Y I + + + + W++ ++ T
Sbjct: 46 LMDEKLGKIQATAKKTLIPKIRSLVQDGAAYEIQNVLVAHNEIRYRCTGHRWKLNLIDQT 105
Query: 216 STVDLCTEEDDSIPKQQFSFRHISEI-ESAENNSIVDVIGIVISVNP--SVPILRKNGME 272
+ + ++IP+ F F EI ES + + VDVIG V+ + +L K M
Sbjct: 106 KFTKI---DCNTIPEYHFEFVPFKEILESTKEDRHVDVIGRVVERDSLKEKEVLGKKSMV 162
Query: 273 TQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSV-----------KSG 321
+ L+DT G + +LW + + L V PV+ V G
Sbjct: 163 LD---ITLEDTEGNRIHCSLWDTYAIRMDAYLT--VHDPNSPVIVVIHLCKLKKYYATMG 217
Query: 322 KVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISR---EIAAGGAKN 378
N F G T+L ++ D E D G T +S+ + A++
Sbjct: 218 ISNAFYG--------TKLILDDDHPVVKEFLSKID-GADVEVTQGVSQITGSLIVPLAED 268
Query: 379 EIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSD-SFCYTACPLMIGDRQCNKKVTQSG 437
+ + I E L S V V A I I+++ S+ Y AC +C ++
Sbjct: 269 MLQSRMMTI--EDLIESSDQCVVIVLASIIGIEAEYSWYYDACT------KCAGRIKIIA 320
Query: 438 NRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQ 497
R C RCNQ + R+ L Q+ D TG T F + +G ++L + +
Sbjct: 321 GRMFCPRCNQSRNAVP-RFKLHVQVMDNTGSTSFILFDRNVSNYVGKSVQDLIDSQGQGN 379
Query: 498 DDVRFGEIIRSRVFNQYLFRLKIKE 522
+D + + V + LF+++I +
Sbjct: 380 NDKGYPSDLDVLVGKKMLFKVEITD 404
>gi|297825773|ref|XP_002880769.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297326608|gb|EFH57028.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 344
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 63/125 (50%), Gaps = 8/125 (6%)
Query: 440 WQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELY-MLKYELQD 498
W+CD+CN + + RY L + D TG + + F E+I+G PA +L EL D
Sbjct: 88 WRCDKCNTNVSSVEARYWLHLDVMDNTGESKLMLFDSFVEQIIGIPACDLVDPTTEELDD 147
Query: 499 DVRFGEIIRSRVFNQYLFRLKIKEELYG---DEQRVKITVIRADQVNYSS---ESRYLLD 552
+ +++++ + Y F L ++++ DE +V V+ + +N+ + E Y +D
Sbjct: 148 PLPLPDVVKNIIGKTYQFALCVEQDNISRGNDEYKVS-EVLTSQNLNHPALEPEVDYPVD 206
Query: 553 LISKS 557
L S S
Sbjct: 207 LSSMS 211
>gi|414886401|tpg|DAA62415.1| TPA: hypothetical protein ZEAMMB73_531881 [Zea mays]
Length = 409
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 76/180 (42%), Gaps = 13/180 (7%)
Query: 127 RWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIR-VTCFNAVVDRFYEIIEVGR 185
+++I ARV K + R F L D +G +I +T V F ++
Sbjct: 169 KYSIVARVEVKFPIEPCFRDRQ-----HFILSDINGAKIEAITYMYETVKHFDNLLHEKH 223
Query: 186 VYLIS--KGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIES 243
VY + K SL P + NF HL E+ L+ + V+ T +P + ++ +I
Sbjct: 224 VYKMHNVKFSLHPGEFNFRHLNGHMELCLDQQTIVEPYTVPIQMVPFPKQILLNLDDIAE 283
Query: 244 AENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQK 303
N ++VD++ IV+ ++ M R + + D G + +WGD NK +
Sbjct: 284 LPNRTLVDIMAIVVHLDTI-----HRTMWCPFRKIVIMDARGYLHIIKVWGDLLNKNALR 338
>gi|413933977|gb|AFW68528.1| hypothetical protein ZEAMMB73_247337 [Zea mays]
Length = 507
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 78/381 (20%), Positives = 152/381 (39%), Gaps = 41/381 (10%)
Query: 121 LNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSD--GGEIRVTCFNAVVDRFY 178
L Y+ I+ V+ K ++ A +G + D++ SD G I + +
Sbjct: 15 LTAYKKHAIIQVHVSRKWS---FHGATENGPLQHIDMVLSDCKGNSIYAEIPANLAEEKG 71
Query: 179 EIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHI 238
+IE ++Y IS+ + A+ + + + I + + + + P +
Sbjct: 72 VLIETNQIYDISRFRVTAAKTAYKPIDGDKMIQFTTYTIIKPASNPPPTFPLYIYRLTPF 131
Query: 239 SEIESA--ENNSIVDVIGIVISVNPSVPILRKNGME-TQRRILNLKDTSGRSVELTLWGD 295
EIES +DV+G + V + + + T R + ++D S +++++TLW
Sbjct: 132 DEIESQIQHKTKFLDVLGTITEVTALKTVHIQGQLSPTIIRDVMIEDLSRKTLKITLWAK 191
Query: 296 FCNKEGQKLQEMVD-VGFFPVLSVKSGKVNDF-SGKSIGTIPSTQLFINPDF--AEAHEL 351
+Q++ D V P+L++ G + F G + + + NP AEA++
Sbjct: 192 --RATSFTIQDVYDPVSKKPILALFVGCLPKFYKGVYLSGGAACHWYFNPTIPEAEAYQN 249
Query: 352 REWFDSGGKNAATVSISREIAAGGAKNEI------HKTVSQIKNEGLGRSEKPDWVTVRA 405
R GG+ T+ + A HKT+ Q+ + + PD
Sbjct: 250 RR----GGE---TIQLHLPTQPKHALQTFQPPTIEHKTLEQLLT--MNPYDYPD-TGYEC 299
Query: 406 FITFIK---SDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQI 462
+T K S+++ Y +C +C +K T + CD C + D ++Y L+ +
Sbjct: 300 TVTITKIDTSNTWWYPSC------TKCGRKTTPHNTTYYCDWC--KWDGYKFKYKLKFRA 351
Query: 463 QDQTGLTWVTAFQESGEEILG 483
D T + + F I+G
Sbjct: 352 SDATAMAQMFCFDNIARYIVG 372
>gi|414868467|tpg|DAA47024.1| TPA: hypothetical protein ZEAMMB73_652886 [Zea mays]
Length = 710
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 82/181 (45%), Gaps = 15/181 (8%)
Query: 127 RWAIKARVTAKGDLR-RYNNARGDGKVFSFDLLDSDGGEIR-VTCFNAVVDRFYEIIEVG 184
+++I ARV K + RY++ + F L D +G +I +T + V F ++
Sbjct: 86 KYSIVARVEVKFPIEPRYHDRQ------HFILSDINGAKIEAITYVSVTVKHFNNLLHEK 139
Query: 185 RVYLIS--KGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIE 242
VY + K L P + NF HL E++ + V+ T P + F ++ +I
Sbjct: 140 HVYNMHNVKFGLHPGEFNFRHLNGPMELYFNQQTIVEPYTFPIQMPPFPKHIFFNLDDIA 199
Query: 243 SAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQ 302
N S+VD++ IV+ ++ + + R+I+ + D G + +WGD NK
Sbjct: 200 ELPNRSLVDIMAIVVHMD----TIHRTMWGPFRKIV-IMDARGSLHIIKVWGDLLNKNAL 254
Query: 303 K 303
+
Sbjct: 255 R 255
>gi|413919338|gb|AFW59270.1| hypothetical protein ZEAMMB73_870626 [Zea mays]
Length = 351
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 80/181 (44%), Gaps = 15/181 (8%)
Query: 127 RWAIKARVTAKGDLR-RYNNARGDGKVFSFDLLDSDGGEIR-VTCFNAVVDRFYEIIEVG 184
+++I ARV K + RY + + F L D G +I +T + V F ++
Sbjct: 111 KYSIVARVEVKFPIEPRYRDRQ------HFILSDIHGAKIEAITYVSVTVKHFNNLLHEK 164
Query: 185 RVYLIS--KGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIE 242
VY + K L P + NF HL E++ + V+ T P + F ++ +I
Sbjct: 165 HVYHMHNVKFGLHPGEFNFRHLNGPMELYFNQQTIVEPYTVPIQMPPFPKHIFFNLDDIA 224
Query: 243 SAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQ 302
N ++VD++ IV+ ++ + + R+I+ + D G + +WGD NK
Sbjct: 225 ELPNRTLVDIMAIVVHMD----TIHRTMWGPFRKIV-IMDARGSLHIIKVWGDLLNKNAL 279
Query: 303 K 303
+
Sbjct: 280 R 280
>gi|348666728|gb|EGZ06555.1| hypothetical protein PHYSODRAFT_380579 [Phytophthora sojae]
Length = 68
Score = 52.0 bits (123), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 37/68 (54%)
Query: 128 WAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVY 187
W+ R+ A+ +R + + R G++F D DG +RVT FN +RF++++ G V
Sbjct: 1 WSFIGRILARSPVRTFKSWRASGRLFRAHFTDRDGATLRVTVFNEGAERFFDVLSPGAVC 60
Query: 188 LISKGSLK 195
S G +K
Sbjct: 61 SFSNGRIK 68
>gi|413933201|gb|AFW67752.1| hypothetical protein ZEAMMB73_289207 [Zea mays]
Length = 217
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 87/208 (41%), Gaps = 18/208 (8%)
Query: 117 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL--DSDGGEIRVTCFNAVV 174
PI LNP + I+ RV K + R A DG + +L+ D G I A+
Sbjct: 5 PITELNPQKINVVIRVRVIRKLEFR---GATNDGPLRHINLILADEQGTAIHAEIPAALA 61
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
+I++ +VY I + P++ F + N I + + + P ++
Sbjct: 62 IEKGSLIQIDKVYEIRHFRVMPSRGYFKPVHNNLMIQFTLYTQAKVVNDPPHIFPIYIYN 121
Query: 235 FRHISEIESAENNS--IVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTL 292
++E +N ++DVIG++ + P + + R + +KD S S+++TL
Sbjct: 122 LTSFEKVEENVDNRNYLIDVIGMLTQI--GAPHVAGYNNSSIVRDIFIKDISDASLKITL 179
Query: 293 WGD---------FCNKEGQKLQEMVDVG 311
WGD CN+ K ++ VG
Sbjct: 180 WGDQASGFSIDNVCNESNNKPIVIMFVG 207
>gi|413922042|gb|AFW61974.1| hypothetical protein ZEAMMB73_162126 [Zea mays]
Length = 336
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 81/181 (44%), Gaps = 15/181 (8%)
Query: 127 RWAIKARVTAKGDLR-RYNNARGDGKVFSFDLLDSDGGEIR-VTCFNAVVDRFYEIIEVG 184
+++I ARV K + RY + + F L D +G +I +T + V F ++
Sbjct: 96 KYSIVARVEVKFPIEPRYRDRQ------HFILSDINGAKIEAITYVSVTVKHFNNLLHEK 149
Query: 185 RVYLIS--KGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIE 242
VY + K L P + NF HL E++ + V+ T P + F ++ +I
Sbjct: 150 HVYNMHNVKFGLHPGEFNFRHLNGPMELYFNQQTIVEPYTVPIQMPPFPKHIFFNLDDIA 209
Query: 243 SAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQ 302
N ++VD++ IV+ ++ + + R+I+ + D G + +WGD NK
Sbjct: 210 ELPNRTLVDIMAIVVHMD----TIHRTMWGPFRKIV-IMDARGSLHIIKVWGDLLNKNAL 264
Query: 303 K 303
+
Sbjct: 265 R 265
>gi|297849862|ref|XP_002892812.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297338654|gb|EFH69071.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 586
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/280 (22%), Positives = 127/280 (45%), Gaps = 35/280 (12%)
Query: 121 LNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEI 180
++P R+ IK ++ L R + G L+D G + T + ++++F
Sbjct: 15 IDPAAQRYKIKVQIV---KLWR-GFQKETGSAIEMVLIDEKGTRMHATVEDKLMNKFKSD 70
Query: 181 IEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQF-SFRHIS 239
++ + L+ L + + ++I T++V +C + + +P++ F F I
Sbjct: 71 LKEDQSILVDTFQLVNNGFEYKTSPHSFKISFFRTTSVTICDDFPNDVPEKYFVDFLKIL 130
Query: 240 EIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNK 299
++ ++VDVIG ++++ P I+ + G T + + L+DT+ + T WG + ++
Sbjct: 131 A-GVLDSKTLVDVIGHIVNIGPLEDIMIR-GRSTTKLDVELRDTNDARLLCTFWGKYADQ 188
Query: 300 ----EGQKLQEMVDVGFFPVLSVKSGKVNDFSG-KSIG-TIPSTQLFINPDFAEAHELRE 353
+ +M+ V V+ ++ +F G +SI + ST++ ++P AHE R
Sbjct: 189 VSTYAAEHSADMI------VCVVRFAQIKEFRGNRSISNSYNSTRILLDPQTKVAHEFRS 242
Query: 354 WFDSGGKNAATVSISREIAAGGA----KNEIHKTVSQIKN 389
NAA V I GG K E K+ +++K+
Sbjct: 243 -------NAAAV-----IYLGGYEIKRKAEYLKSATRVKD 270
>gi|302825355|ref|XP_002994300.1| hypothetical protein SELMODRAFT_432229 [Selaginella moellendorffii]
gi|300137821|gb|EFJ04635.1| hypothetical protein SELMODRAFT_432229 [Selaginella moellendorffii]
Length = 176
Score = 51.2 bits (121), Expect = 0.001, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 267 RKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDF 326
+ +G +RR+L+L D SG S+++ LW EG +++E G P++ VK +++D+
Sbjct: 57 KDSGAFMRRRMLSLSDESGHSIDMCLWDSKAEDEGSEIEEKPGQGERPIVCVKGSRISDY 116
Query: 327 SGKSIGTIPSTQLFINPDF 345
+GK I + + F DF
Sbjct: 117 NGKFISV--TVKEFQTGDF 133
>gi|343957969|emb|CCA30601.1| replication factor A protein 1 homolog, partial [Glomus etunicatum]
Length = 181
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 65/166 (39%), Gaps = 32/166 (19%)
Query: 329 KSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIK 388
K + T ST L NP EA EL EW+ +GG S++ + E K++ +IK
Sbjct: 1 KGLSTTNSTVLITNPSLPEATELSEWYSTGGSQLEFNSLASQTGGSINIKEAQKSLEEIK 60
Query: 389 -NEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQ 447
++ LG + + + A ++ D Q + T
Sbjct: 61 SDKTLGLKK------------ILAKRKYLEVAIIGVVIDVQNHLTPT------------- 95
Query: 448 EIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLK 493
YRY+L +I D + W+ F E+ ILG PA + L+
Sbjct: 96 ------YRYILPIRITDHSDSVWMNCFDETAALILGMPADDFRKLR 135
>gi|414584906|tpg|DAA35477.1| TPA: hypothetical protein ZEAMMB73_493662 [Zea mays]
Length = 291
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 80/181 (44%), Gaps = 15/181 (8%)
Query: 127 RWAIKARVTAKGDLR-RYNNARGDGKVFSFDLLDSDGGEIR-VTCFNAVVDRFYEIIEVG 184
+++I ARV K + RY + + F L D +G +I +T + V F ++
Sbjct: 59 KYSIVARVEVKFPIEPRYRDRQ------HFILSDINGAKIEAITYVSVTVKHFNNLLHEK 112
Query: 185 RVYLIS--KGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIE 242
VY + K L P NF HL E++ + V+ T P + F ++ +I
Sbjct: 113 HVYNMHNVKFGLHPGAFNFRHLNGPMELYFNQQTIVEPYTVPIQMPPFPKHIFFNLDDIA 172
Query: 243 SAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQ 302
N ++VD++ IV+ ++ + + R+I+ + D G + +WGD NK
Sbjct: 173 ELPNRTLVDIMAIVVHMD----TIHRTMWGPFRKIV-IMDARGSLHIIKVWGDLLNKNAL 227
Query: 303 K 303
+
Sbjct: 228 R 228
>gi|77548273|gb|ABA91070.1| hypothetical protein LOC_Os11g01460 [Oryza sativa Japonica Group]
gi|125535492|gb|EAY81980.1| hypothetical protein OsI_37160 [Oryza sativa Indica Group]
Length = 567
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 90/404 (22%), Positives = 155/404 (38%), Gaps = 55/404 (13%)
Query: 128 WAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVY 187
W IK +V D N+A + L+D G I + + ++D + I VY
Sbjct: 16 WNIKVKVMRLWD--SVNSATDELLSLDMILMDEQGDVIHASIWKKLIDNYKTQINESSVY 73
Query: 188 LISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENN 247
+ ++ +QK + + N+ +I + V E +S P+ F F I ++ N
Sbjct: 74 VFGNFKVQESQK-YRPVCNDLKITFMYNTKVKQVKETAESFPEYYFDFASIDTLQDRANK 132
Query: 248 S--IVDVIGIVISVNP-SVPILRKNGME---TQRRILNLKDTSGRSVELTLWGDFCNKEG 301
+ DVIG++ + P + RKN + R + L G + LTLWG
Sbjct: 133 DQHLSDVIGLLTRMKPIETRMTRKNTPNPRLAEIREIELLLLGGDKIRLTLWGQLARFFS 192
Query: 302 QKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHEL--REWFDSGG 359
+ + +G V+ V S V ++ G S+ + +T+++ N E L R++ +
Sbjct: 193 EDV-----IGNQTVVIVTSTTVQEYIGLSLRSSSATRIYTNLHIRETWTLIDRQFSEETI 247
Query: 360 KNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTA 419
V S G + ++ +K+ R P S F +T+
Sbjct: 248 PKMMEVDKS---TQGTREEQMFYNRKTLKDITEMRHGNPG------------SQEFVFTS 292
Query: 420 CPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGE 479
KVT DR + I + Y L+ QI D T T T F + +
Sbjct: 293 ------------KVT-------IDRVQENI---QWWYRLRLQISDHTTSTSCTIFDDVAQ 330
Query: 480 EILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEE 523
+L P L L D++ II+ Q +F+ K+ E+
Sbjct: 331 SMLETPVSSLLNLLDGKNDEI--PNIIQQLCGKQLIFKFKLSEQ 372
>gi|391331509|ref|XP_003740187.1| PREDICTED: replication factor A protein 1-like [Metaseiulus
occidentalis]
Length = 278
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/236 (20%), Positives = 96/236 (40%), Gaps = 53/236 (22%)
Query: 129 AIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYL 188
A+ R+ +K ++ + GK+F+F L D G+I V + YE I + ++
Sbjct: 76 AVLGRIKSKTPIKVWTKGTDTGKLFNFVLSDM-SGDINVISSGNAAEEIYEKITLSKIVP 134
Query: 189 ISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNS 248
I+ D +P+ Q +S++ + NS
Sbjct: 135 IA----------------------------------GDDLPEIQSLTTILSDLATKPANS 160
Query: 249 IVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLW----GDFCNKEGQKL 304
++D+ ++ V P +G Q++I+ + D S R + + +W G F +KEGQ +
Sbjct: 161 VIDIRVVIFDVGPPQSFTCHDGTSRQKQIITVLDKSMRMINVGVWSEFVGKFDDKEGQAV 220
Query: 305 QEMVDVGFFPVLSVKSGKVNDFSG-KSIGTIPSTQLFINPDFAEAHELREWFDSGG 359
++ ++ D+ G + + + +T L D E EL+ WF++ G
Sbjct: 221 IN------------RNLQIRDYKGVRQLSSTSNTMLAAITD-TETRELQTWFETTG 263
>gi|357439657|ref|XP_003590106.1| hypothetical protein MTR_1g044430 [Medicago truncatula]
gi|355479154|gb|AES60357.1| hypothetical protein MTR_1g044430 [Medicago truncatula]
Length = 552
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 74/358 (20%), Positives = 145/358 (40%), Gaps = 38/358 (10%)
Query: 185 RVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESA 244
RV+ I S+ ++ ++ ++I + + + C +D +P + EI +
Sbjct: 5 RVFSIGNFSVASNVGSYRTARHPYKINFQYGTKIKQC--DDKFVPADIYVIGDPREIFQS 62
Query: 245 ENNS--IVDVIGI--VISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKE 300
E ++ ++DV+G+ V+ V S NG +++ + L D +G ++TL+G + ++
Sbjct: 63 EYDTDYLIDVMGMLKVVGVEKSYTC---NGSQSKMIPIEL-DYNGFHFKVTLFGPYVDEL 118
Query: 301 GQKLQEMVDVGFFPVLSVKSGKVNDFSGKSI-GTIPSTQLFINPDFAEAHELRE-WFDSG 358
L SG+ + +I TI +T++ NP F A LR+ ++
Sbjct: 119 NAFLA--------------SGETENVVVATIQNTINATKVLFNPTFTAALLLRKRMVEND 164
Query: 359 GKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDS-FCY 417
+ +S E + + + EGL + + V + I DS + Y
Sbjct: 165 DSPSPGISKITEASKVSVEEDFFNLSPMTTVEGLKDCAEEKFFAVFGTVNVIVDDSDWWY 224
Query: 418 TACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQES 477
T+C + CNKKV + C +CN+ + RY++ ++ D T F
Sbjct: 225 TSCVV------CNKKVYPDEKMYFCSKCNKHVLNVTPRYMI--KVVDHTDSATFVLFDRD 276
Query: 478 GEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKI---KEELYGDEQRVK 532
E+ ++ + D + I + V YLF+++ +Y RVK
Sbjct: 277 AAELFKKTCADMIESRGMGTDASEVPKDILAMVEKSYLFKVETNLGSSTMYEKSYRVK 334
>gi|413923473|gb|AFW63405.1| hypothetical protein ZEAMMB73_358085 [Zea mays]
Length = 329
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 82/181 (45%), Gaps = 15/181 (8%)
Query: 127 RWAIKARVTAKGDLR-RYNNARGDGKVFSFDLLDSDGGEIR-VTCFNAVVDRFYEIIEVG 184
+++I ARV K + R+ + + F L D +G +I +T V F ++
Sbjct: 160 KYSIVARVEVKFPIEPRFRDRQ------HFILSDINGAKIEAITYMYETVKHFDNLLHGK 213
Query: 185 RVYLIS--KGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIE 242
VY + K SL P + NF HL E+ L+ + V+ T P + ++++I
Sbjct: 214 HVYKMHNVKFSLHPGEFNFRHLNGPMELCLDQQTIVEPYTVPIQMAPFPKQILLNLADIA 273
Query: 243 SAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQ 302
N ++VD++ IV+ ++ + + R+I+ + D G + +WGD NK
Sbjct: 274 ELPNRTLVDIMAIVVHLD----TIHRTMWGPFRKIV-IMDARGYLHIIKVWGDLLNKNAL 328
Query: 303 K 303
+
Sbjct: 329 R 329
>gi|414877177|tpg|DAA54308.1| TPA: hypothetical protein ZEAMMB73_716739 [Zea mays]
Length = 299
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 79/181 (43%), Gaps = 15/181 (8%)
Query: 127 RWAIKARVTAKGDLR-RYNNARGDGKVFSFDLLDSDGGEIR-VTCFNAVVDRFYEIIEVG 184
+++I ARV K + RY + + F L D G +I +T + V F ++
Sbjct: 59 KYSIVARVEVKFPIEPRYRDRQ------HFILSDIHGAKIEAITYVSVTVKHFNNLLHEK 112
Query: 185 RVYLIS--KGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIE 242
VY + K L P NF HL E++ + V+ T P + F ++ +I
Sbjct: 113 HVYNMHNVKFGLHPGPFNFRHLNGPMELYFNQQTIVEPYTVPIQMPPFPKHIFFNLDDIA 172
Query: 243 SAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQ 302
N ++VD++ IV+ ++ + + R+I+ + D G + +WGD NK
Sbjct: 173 ELPNRTLVDIMAIVVHMD----TIHRTMWGPFRKIV-IMDARGSLHIIKVWGDLLNKNAL 227
Query: 303 K 303
+
Sbjct: 228 R 228
>gi|413926629|gb|AFW66561.1| hypothetical protein ZEAMMB73_966381 [Zea mays]
gi|414590868|tpg|DAA41439.1| TPA: hypothetical protein ZEAMMB73_922043 [Zea mays]
Length = 299
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 79/181 (43%), Gaps = 15/181 (8%)
Query: 127 RWAIKARVTAKGDLR-RYNNARGDGKVFSFDLLDSDGGEIR-VTCFNAVVDRFYEIIEVG 184
+++I ARV K + RY + + F L D G +I +T + V F ++
Sbjct: 59 KYSIVARVEVKFPIEPRYRDRQ------HFILSDIHGAKIEAITYVSVTVKHFNNLLHEK 112
Query: 185 RVYLIS--KGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIE 242
VY + K L P NF HL E++ + V+ T P + F ++ +I
Sbjct: 113 HVYNMHNVKFGLHPGPFNFRHLNGPMELYFNQQTIVEPYTVPIQMPPFPKHIFFNLDDIA 172
Query: 243 SAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQ 302
N ++VD++ IV+ ++ + + R+I+ + D G + +WGD NK
Sbjct: 173 ELPNRTLVDIMAIVVHMD----TIHRTMWGPFRKIV-IMDARGSLHIIKVWGDLLNKNAL 227
Query: 303 K 303
+
Sbjct: 228 R 228
>gi|321456442|gb|EFX67550.1| hypothetical protein DAPPUDRAFT_330970 [Daphnia pulex]
Length = 200
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 60/133 (45%), Gaps = 20/133 (15%)
Query: 222 TEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLK 281
TEE P F+F ++ + EN+SIVDVIG+V+ + V L
Sbjct: 42 TEEAAEKPTITFNFVPFDQLPNQENDSIVDVIGLVLHLQEKV----------------LV 85
Query: 282 DTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFI 341
+T + +L +F + L+++ D + VK N F + + T+ ST + I
Sbjct: 86 ETKTTKISRSLTAEFVD--SSLLEKVADKCIVALPGVKIS--NKFGRRYLETLSSTVVQI 141
Query: 342 NPDFAEAHELREW 354
N D E ELREW
Sbjct: 142 NADMTEVRELREW 154
>gi|320170668|gb|EFW47567.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 467
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 97/435 (22%), Positives = 166/435 (38%), Gaps = 73/435 (16%)
Query: 153 FSFDLLDSDGGEIRVTCFN------AVVDRFY--EIIEVGRVYLISKGSLKPAQKNFNHL 204
F+F L DS+ I T + + RF +++EV ++ K P Q+
Sbjct: 44 FTFTLRDSESDSINCTMWGDPNLIGSAHSRFNTGDVVEVIHPQVVPK---NPTQEQRWMP 100
Query: 205 KNEWEIFLEATSTVDLCTEEDDSIPKQQF---------SFRHISEIESAE---NNSIVDV 252
+ L+ S+ D+ D +Q+F F I +I ++ + ++V
Sbjct: 101 RTSSAYALQLNSSSDVQLYMGDLPDRQRFVRIPMLYESGFVKIQDILASPQELSQQYINV 160
Query: 253 IGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGF 312
+GIV + NG T + + L D SG + +TLWG C + F
Sbjct: 161 LGIVSRIGAVTSTTTSNGRATDKLEVYLTDDSGGEIRMTLWGS-CIAMASNWTVRDTILF 219
Query: 313 FPVLSVK------SGKVNDFSGKSIGTIPSTQLFIN--------PDFAEAHELREWFDSG 358
+ V+ S ND + + + +T+L + PD EA EL ++
Sbjct: 220 LSDVRVRTSSFVPSAARNDPTQEHERMVYTTELSFDNCSLVTEYPDLREAQELYDYAQQL 279
Query: 359 GKNAATVS------ISREIAAGGAKNEIHKTVSQIKNEGLG--RSEKPDWVTVRAFITFI 410
+A T + +SR +EI ++ + N + + +P FIT +
Sbjct: 280 PADAFTTASRMGGGMSRAAFKPIRNDEIVESQGKFVNVDVAGVYALRPPVFVFDVFITDL 339
Query: 411 KSDSFCYTA-----CPLMIGDRQCNKK--VTQSGNRWQCDRC--NQEIDECDYRYLLQAQ 461
D F YT CP CN++ V + NR +C N + +++ L
Sbjct: 340 PLDDF-YTQVVIARCP------GCNQQLPVEHACNRPECANLGENAADNPANWQIQLPIA 392
Query: 462 IQDQTGLTWVTAFQ-ESGEEILGCPAKELYMLKYELQDDVRFGEII-RSRV--------- 510
+ D TG Q + ++G A ELY + YE + +R I R RV
Sbjct: 393 VTDATGTLLKIVLQGDPAMSLIGVDASELYFMSYEERSALRRRHIFQRHRVVCKMSQYRS 452
Query: 511 FNQYLFRLKIKEELY 525
F QY ++ +L+
Sbjct: 453 FAQYPLYEVVRMDLF 467
>gi|413924402|gb|AFW64334.1| hypothetical protein ZEAMMB73_790128 [Zea mays]
Length = 283
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 85/183 (46%), Gaps = 19/183 (10%)
Query: 127 RWAIKARVTAKGDLR-RYNNARGDGKVFSFDLLDSDGGEIR-VTCFNAVVDRFYEIIEVG 184
+++I ARV K + R+ + + F L D +G +I +T V F ++
Sbjct: 40 KYSIVARVEVKFPIEPRFRDRQ------HFVLSDINGAKIEAITYMYETVKHFDNLLHEK 93
Query: 185 RVYLIS--KGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTE--EDDSIPKQQFSFRHISE 240
VY + K SL P + NF HL E+ L + V+ T + S PKQ F ++++
Sbjct: 94 HVYKMHNVKFSLHPGEFNFRHLNGPMELCLNQQTIVEPYTFPIQMVSFPKQ--IFLNLAD 151
Query: 241 IESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKE 300
I N ++VD++ IV+ ++ + + R+I+ + D G + +WGD NK
Sbjct: 152 IAELPNRTLVDIMAIVVHLD----TIHRTMWGPFRKIV-IMDARGSLHIIKVWGDLLNKN 206
Query: 301 GQK 303
+
Sbjct: 207 ALR 209
>gi|414869930|tpg|DAA48487.1| TPA: hypothetical protein ZEAMMB73_818761 [Zea mays]
Length = 299
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 80/181 (44%), Gaps = 15/181 (8%)
Query: 127 RWAIKARVTAKGDLR-RYNNARGDGKVFSFDLLDSDGGEIR-VTCFNAVVDRFYEIIEVG 184
+++I ARV K + RY + + F L D G +I +T + V F ++
Sbjct: 59 KYSIVARVEVKFPIEPRYRDKQ------HFILSDIHGAKIEAITYVSVTVKHFSNLLHEK 112
Query: 185 RVYLIS--KGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIE 242
VY I K L P + NF HL E++ + V+ T P + F ++ +I
Sbjct: 113 HVYNIHNVKFGLHPGEFNFRHLNGPMELYFNQQTIVEPYTVPIQMPPFPKHIFFNLDDIA 172
Query: 243 SAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQ 302
N ++V+++ IV+ ++ + + R+I+ + D G + +WGD NK
Sbjct: 173 ELPNRTLVNIMAIVVHMDT----IHRTMWGPFRKIV-IMDARGSLHIIKVWGDLLNKNAL 227
Query: 303 K 303
+
Sbjct: 228 R 228
>gi|108862225|gb|ABA96519.2| hypothetical protein LOC_Os12g06230 [Oryza sativa Japonica Group]
Length = 2279
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 71/337 (21%), Positives = 131/337 (38%), Gaps = 29/337 (8%)
Query: 162 GGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLC 221
G I + + F II G+VY ++ ++P +N+ + N I +T++
Sbjct: 1482 GASIAAYIYPPLDVVFGPIITEGKVYRLTFYRVRPCSRNYRPVNNRMSINFTKWTTLEEH 1541
Query: 222 TEEDDSIPKQQFSFRHISEIESA--ENNSIVDVIGIVISVNPSVPI-LRKNGMETQRRIL 278
+ P +S +E+ S +S DVIG++ V+ I R ++ +R +
Sbjct: 1542 LDVPADFPCYAYSPTPYNELRSHVDRKDSFTDVIGVITEVSSVTTIQTRIKDGDSLKRSV 1601
Query: 279 NLKDTSGRSVELTLWG--------DFCNKEGQK-LQEMVDVGFFPVLSVKSGKVND--FS 327
+++ + + LWG D G+K Q + VG V++ + + S
Sbjct: 1602 CIRNADNVIINIALWGERATSFPEDAIISAGEKEPQVAIFVGTLVRGYVRNASLGNVSLS 1661
Query: 328 GKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQI 387
G S + + +IN D E + ++ + + I GA+ KTV+Q+
Sbjct: 1662 GNS-----ACKWYINIDTPEVNSFKDSIKGNYEPIQFIDIPVPNVIVGAE---QKTVAQL 1713
Query: 388 KNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQC-DRCN 446
K + +K ++ F S+ YTAC + C K G ++C D
Sbjct: 1714 KELHPFKFKKHEFQVTVVIKKFCMQASWWYTACDI------CKKTAKPYGRAYRCGDPTC 1767
Query: 447 QEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILG 483
I R+ L D+T T F + ++G
Sbjct: 1768 PPIVSASPRFKLNIIAGDETAETTFILFGRLAQRLIG 1804
>gi|413924401|gb|AFW64333.1| hypothetical protein ZEAMMB73_790128 [Zea mays]
Length = 280
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 85/183 (46%), Gaps = 19/183 (10%)
Query: 127 RWAIKARVTAKGDLR-RYNNARGDGKVFSFDLLDSDGGEIR-VTCFNAVVDRFYEIIEVG 184
+++I ARV K + R+ + + F L D +G +I +T V F ++
Sbjct: 40 KYSIVARVEVKFPIEPRFRDRQ------HFVLSDINGAKIEAITYMYETVKHFDNLLHEK 93
Query: 185 RVYLIS--KGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTE--EDDSIPKQQFSFRHISE 240
VY + K SL P + NF HL E+ L + V+ T + S PKQ F ++++
Sbjct: 94 HVYKMHNVKFSLHPGEFNFRHLNGPMELCLNQQTIVEPYTFPIQMVSFPKQ--IFLNLAD 151
Query: 241 IESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKE 300
I N ++VD++ IV+ ++ + + R+I+ + D G + +WGD NK
Sbjct: 152 IAELPNRTLVDIMAIVVHLD----TIHRTMWGPFRKIV-IMDARGSLHIIKVWGDLLNKN 206
Query: 301 GQK 303
+
Sbjct: 207 ALR 209
>gi|356995354|emb|CCD35049.1| replication protein A1, partial [Apatura iris xanthina]
Length = 76
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 383 TVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKK-VTQSGNRWQ 441
T S+ LG +K D+ ++ +TF +D+ Y ACP QCNKK V Q +++
Sbjct: 4 TFSEADERKLGSGDKGDFFSLLGVLTFTFADNVVYKACP----QEQCNKKLVDQENGQFR 59
Query: 442 CDRCNQEIDECDYRYLL 458
C++CN+E YR LL
Sbjct: 60 CEKCNREYPNFKYRLLL 76
>gi|308081030|ref|NP_001182790.1| uncharacterized protein LOC100500983 [Zea mays]
gi|195623976|gb|ACG33818.1| hypothetical protein [Zea mays]
Length = 305
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 98/242 (40%), Gaps = 26/242 (10%)
Query: 121 LNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSD--GGEIRVTCFNAVVDRFY 178
L P++ I+ V+ K R A G + D++ SD G I V + ++
Sbjct: 9 LAPHKIHAKIQVHVSRKWLFR---GATDSGPLQHVDMVLSDREGNAIYVEIPGNLAEQKA 65
Query: 179 EIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHI 238
IE G VY IS+ + A+ F + + I + V T + P +
Sbjct: 66 TNIEEGGVYDISRFRVCAAKTVFKIVDGDKMIQFTFHTIVKRVTSPPTTFPLYVYRLTSF 125
Query: 239 SEIESA--ENNSIVDVIGIVISVNPSVPI-LRKNGMETQRRILNLKDTSGRSVELTLWG- 294
IE N+ VDV+G++ ++ P+ +R +T R + ++D S +++++TLW
Sbjct: 126 DLIEPHVQTTNNFVDVLGVITEIHELTPVHVRSQLTQTVTRTIIIEDLSNKTMKITLWAD 185
Query: 295 --------DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFA 346
D + KL ++ VG P F G + P+ + + NP
Sbjct: 186 QAIMFNLHDVYDANTNKLILVLFVGCLPKF---------FKGVYLSGGPACRWYFNPTIP 236
Query: 347 EA 348
EA
Sbjct: 237 EA 238
>gi|413916178|gb|AFW56110.1| hypothetical protein ZEAMMB73_034381 [Zea mays]
Length = 446
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 82/181 (45%), Gaps = 15/181 (8%)
Query: 127 RWAIKARVTAKGDLR-RYNNARGDGKVFSFDLLDSDGGEIR-VTCFNAVVDRFYEIIEVG 184
+++I ARV K + R+ + + F L D +G +I +T V F ++
Sbjct: 206 KYSIVARVEVKFPIEPRFRDRQ------HFVLSDINGAKIEAITYMYETVKHFDNLLHEK 259
Query: 185 RVYLIS--KGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIE 242
VY + K SL P + NF HL E+ L+ + V+ T P + ++++I
Sbjct: 260 HVYKMHNVKFSLHPGEFNFRHLNGPMELCLDQQTIVEPYTVPIQMAPFPKQILLNLADIA 319
Query: 243 SAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQ 302
N ++VD++ +V+ ++ + + R+I+ + D G + +WGD NK
Sbjct: 320 ELPNRTLVDIMAVVVHLD----TIHRTMWGPFRKIV-IMDARGYLHIIKVWGDLLNKNAL 374
Query: 303 K 303
+
Sbjct: 375 R 375
>gi|413942292|gb|AFW74941.1| hypothetical protein ZEAMMB73_054394 [Zea mays]
Length = 242
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 8/153 (5%)
Query: 154 SFDLLDSDGGEIR-VTCFNAVVDRFYEIIEVGRVYLIS--KGSLKPAQKNFNHLKNEWEI 210
F D +G +I +T V F ++ VY + K SL P + NF HL E+
Sbjct: 47 HFIFYDINGAKIEAITYMYETVKHFDNLLHEKHVYKMHNVKFSLHPGEFNFRHLNGPMEL 106
Query: 211 FLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNG 270
L+ + V+ T +P + ++++I N ++VD++ IV+ ++ + +
Sbjct: 107 CLDQQTIVEPYTVPIQMVPFPKQILLNLADITELPNRTLVDIMAIVVHLD----TIHRTM 162
Query: 271 METQRRILNLKDTSGRSVELTLWGDFCNKEGQK 303
R+I+ + D G + +WGD NK +
Sbjct: 163 WGPFRKIV-IMDARGYLHIIKVWGDLLNKNALR 194
>gi|5732052|gb|AAD48951.1|AF147262_14 contains similarity to Oryza sativa replication protein A1
(GB:AF009179) [Arabidopsis thaliana]
gi|7267341|emb|CAB81115.1| AT4g07450 [Arabidopsis thaliana]
Length = 439
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 71/303 (23%), Positives = 127/303 (41%), Gaps = 30/303 (9%)
Query: 243 SAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQ 302
SA +N + +V+G V+ + L N T++ +L+D + TLWG + Q
Sbjct: 53 SANSNILHNVMGQVVD-RSKIQDLNANNKPTKKIDFHLRDQHDTRLACTLWGKYAEIVDQ 111
Query: 303 KLQEMVDVGFFPVLSVKSGKVNDFSG-KSIG-TIPSTQLFINPDFAEAHELREWFDSGGK 360
QE D V ++ K+N ++ KS+ + +Q+F++P AE ++ + G
Sbjct: 112 ACQESADGTV--VCLIRFAKINLYNDTKSVSNSFDVSQVFVDPTLAELGLFKQSIPTDGL 169
Query: 361 N-AATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTA 419
++ S + + A ++ Q + L S+ TV ++ I +D Y
Sbjct: 170 TLGSSGSFHKRLYAPRTGDDDGDYPRQTIKDVLTSSDVGKCKTV-CTVSAIDTDWPWYYF 228
Query: 420 CPLMIGDRQCNKKVTQSGN------------RWQCDRCNQEIDECDYRYLLQAQIQDQTG 467
C R NKKV + R+ C+ CN ++ L I QTG
Sbjct: 229 CC-----RAHNKKVVEEEAIKLEDVKLPQKPRFWCEICNGFAKYVVAKFWLHLHIMGQTG 283
Query: 468 LTWVTAFQESGEEILGCPAKELYMLKY-ELQDDVRFGEII---RSRVFNQYLFRLKIKEE 523
F +EI G A EL + E++D ++I + + F Q+LF ++ +E
Sbjct: 284 EARCMLFDSHAKEIFGTIAPELLDGSFDEIEDPTVLPDVINGLKGKTF-QFLFCIQ-REN 341
Query: 524 LYG 526
++G
Sbjct: 342 IFG 344
>gi|414591634|tpg|DAA42205.1| TPA: hypothetical protein ZEAMMB73_964040 [Zea mays]
Length = 332
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 66/148 (44%), Gaps = 8/148 (5%)
Query: 159 DSDGGEIR-VTCFNAVVDRFYEIIEVGRVYLIS--KGSLKPAQKNFNHLKNEWEIFLEAT 215
D+ G +I +T + V F ++ VY + K L P + NF HL E++
Sbjct: 119 DAYGAKIEAITYVSVTVKHFNNLLHEKHVYNMHNVKFGLHPGEFNFRHLNGPMELYFNQQ 178
Query: 216 STVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQR 275
+ V+ T P + F ++ +I N ++VD++ IV+ ++ + + R
Sbjct: 179 TIVEPYTVPIQMPPFPKHIFFNLDDIAELPNKTLVDIMAIVVHMD----TIHRTMWGPFR 234
Query: 276 RILNLKDTSGRSVELTLWGDFCNKEGQK 303
+I+ + D G + +WGD NK +
Sbjct: 235 KIV-IMDARGSLHIIKVWGDLLNKNALR 261
>gi|413926426|gb|AFW66358.1| hypothetical protein ZEAMMB73_054825 [Zea mays]
Length = 301
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 79/181 (43%), Gaps = 15/181 (8%)
Query: 127 RWAIKARVTAKGDLR-RYNNARGDGKVFSFDLLDSDGGEIR-VTCFNAVVDRFYEIIEVG 184
+++I ARV K + RY + + F L D G +I +T + V F ++
Sbjct: 59 KYSIVARVEVKFPIEPRYRDRQ------HFILSDIHGAKIEAITYVSVTVKHFNNLLHEK 112
Query: 185 RVYLIS--KGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIE 242
VY + K L P NF HL E++ + V+ T P + F ++ +I
Sbjct: 113 HVYNMHNVKFGLHPGPFNFRHLNGPMELYFNQQTIVEPYTVPIQMPPFPKHIFFNLDDIA 172
Query: 243 SAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQ 302
N ++VD++ IV+ ++ + + R+I+ + D G + +WGD NK
Sbjct: 173 ELPNRTLVDIMAIVVHMD----TIHRTMWGPFRKIV-IMDARGSLHIIKVWGDLLNKNAL 227
Query: 303 K 303
+
Sbjct: 228 R 228
>gi|410721996|ref|ZP_11361314.1| single-stranded DNA-binding protein [Methanobacterium sp.
Maddingley MBC34]
gi|410597945|gb|EKQ52546.1| single-stranded DNA-binding protein [Methanobacterium sp.
Maddingley MBC34]
Length = 791
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/251 (20%), Positives = 105/251 (41%), Gaps = 49/251 (19%)
Query: 242 ESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCN--- 298
E AE + V + G ++S+ + +G R +++ D +G V +LW D N
Sbjct: 533 ELAEGDRDVSIFGRILSMGEPTQFTKSDGSAGIVRSMDIADDTG-VVRASLWDDKANTSF 591
Query: 299 KEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSG 358
KEG+ ++ +++ +VN + + ++ T + PD E
Sbjct: 592 KEGEAVK------------IENPRVNLRNDRVELSVGRTTIITKPDEEET---------- 629
Query: 359 GKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDW-VTVRAFITFIKSDSFCY 417
+ + +EI + KN +G E+ D + V + I+ + +
Sbjct: 630 --------------SVPSLDEIEGKLYPSKN--IGDIEEGDQSIKVTGEVVDIRGNKILF 673
Query: 418 TACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQES 477
CP CNK+V + + + CD C ++I++ + ++ ++D TG +T F+++
Sbjct: 674 EMCP------NCNKRVNWAEDGYICDICGEKIEKPNMLMIISLMLEDDTGTISITFFRKA 727
Query: 478 GEEILGCPAKE 488
EE+L E
Sbjct: 728 AEEVLDMTTAE 738
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 58/260 (22%), Positives = 112/260 (43%), Gaps = 37/260 (14%)
Query: 118 IAALNPYQGRWAIK--ARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVD 175
I L+ +G + ARV +R ++ DGKV S +L D G I+ T +N +
Sbjct: 181 ITPLSEIKGDMEVNVVARVVRIPRIRSFDRNGRDGKVASLELQDK-SGSIQFTLWNKDTN 239
Query: 176 RFYEI-IEVGRV--YLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQ 232
++ ++ G L ++G + + + NH S + + D +P+
Sbjct: 240 LIEDLDLKEGDAIKVLGAQGRARNGEVSLNH------------SWIGRIVKGDFDVPEYH 287
Query: 233 FSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTL 292
I + N V +IG+V V ++ R +G + + + L+D +G ++ LTL
Sbjct: 288 EDILKIGDAHEMRN---VTIIGLVSKVYDTITFERDDGSTGKVKSMELEDDTG-AIRLTL 343
Query: 293 WGDFCNKEGQKLQEMVDVGFFPVLSVKSGKV--NDFSGKS--IGTIPSTQLFINPDFAEA 348
W + +DV +L + G + +D+SG + + T +T+L NP +
Sbjct: 344 WNEDTE---------IDVKKGDILKIIGGNIEFDDYSGTNYRVNTNWNTKLITNPPIDQ- 393
Query: 349 HELREWFDSGGKNAATVSIS 368
++++ + GK + IS
Sbjct: 394 -DMKDTLNEVGKYLTPMKIS 412
>gi|77552759|gb|ABA95556.1| hypothetical protein LOC_Os11g47400 [Oryza sativa Japonica Group]
Length = 296
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 8/107 (7%)
Query: 417 YTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQE 476
Y +C L CNK V Q +++ C CN+ + RY L+ QI D T T T F +
Sbjct: 30 YMSCNL------CNKIVIQKNDKYHCRNCNKYPENTTPRYRLRLQISDHTTSTSCTIFDD 83
Query: 477 SGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEE 523
+ +L P L L D++ II+ Q +F+ K+ E+
Sbjct: 84 VAQSMLETPVSSLLNLLDGKNDEI--PNIIQQLCGKQLIFKFKLSEQ 128
>gi|413932344|gb|AFW66895.1| hypothetical protein ZEAMMB73_049939 [Zea mays]
Length = 413
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 109/257 (42%), Gaps = 50/257 (19%)
Query: 251 DVIGIVISVNPSVPILRKNGMETQ--RRILNLKDTSGRSVELTLWG--------DFCNKE 300
DVIG V ++ V +R +TQ +R + +++ S +E+ LWG D +
Sbjct: 29 DVIGAVTMIS-DVATIRTKMRQTQTAKRSVTIQNESCTPLEVVLWGGQATSFPADQISIA 87
Query: 301 GQ-KLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGG 359
GQ LQ ++ VG L+ +G S S + ++NP EA L
Sbjct: 88 GQDSLQIIIFVG---TLARSYAGTTSLTGGS-----SCKWYVNPQVPEATSL-------- 131
Query: 360 KNAATVSISRE--IAAGGAKNEI-------HKTVSQIKNEGLGRSEKPDWVTVRAFITFI 410
AA++ R ++A G+ + HK VS+IK+ + EK +W+ +T +
Sbjct: 132 --AASLQHKRSPIMSAAGSTQRVPRISTAEHKKVSEIKHLHPFKHEKVEWLVT---VTVL 186
Query: 411 KSDS-FCYTACPLMIGDRQCNKKVTQSGNRWQC-DRCNQEIDECDYRYLLQAQIQDQTGL 468
K D + Y +C R+C KK G+ ++C D + + RY L D+ G
Sbjct: 187 KIDQLWWYESC------RKCLKKTKPHGDAYKCSDSGCGHVGPPNPRYRLLITAGDEIGE 240
Query: 469 TWVTAFQESGEEILGCP 485
T F + I+ P
Sbjct: 241 TDFILFGRMAQRIVKKP 257
>gi|284434672|gb|ADB85379.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 305
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/242 (20%), Positives = 104/242 (42%), Gaps = 19/242 (7%)
Query: 118 IAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL--DSDGGEIRVTCFNAVVD 175
++ +NP W + ARV+ L Y D ++ DL+ D G I V+
Sbjct: 6 LSEINPTSKHWTVCARVSR---LWEYRGNVDDAEIQHLDLVLVDEQGNAIYAEIPKEHVE 62
Query: 176 RFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSF 235
+++ +Y + + P + + + +++ I + + ++ + + P ++
Sbjct: 63 AKRVLLQEEHIYTFRRFLVSPNKGKYRPVDSDYMIEIGYYTEIEELFDAAPTFPMYAYTL 122
Query: 236 RHISEIES--AENNSIVDVIGIVISVNPSVPILRKN-GMETQRRILNLKDTSGRSVELTL 292
+ ++S E + +DVIG+V +V+ + I N T +R++ +KD +TL
Sbjct: 123 TPLENLDSYIGETRNFLDVIGVVKAVSNAASIQGSNQSSTTTKRLVVIKDAKDCETTVTL 182
Query: 293 WGDFCNK-EGQKLQEM-----VDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFA 346
WG +G+ + E V F +L + G+ SG S + + +I+P+
Sbjct: 183 WGQRAKDFDGEYVYEKEQKNPVPALFVGILMKRYGQNEGLSGGS-----ACRWYISPNIP 237
Query: 347 EA 348
EA
Sbjct: 238 EA 239
>gi|414868223|tpg|DAA46780.1| TPA: hypothetical protein ZEAMMB73_640778 [Zea mays]
Length = 463
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 80/181 (44%), Gaps = 15/181 (8%)
Query: 127 RWAIKARVTAKGDLR-RYNNARGDGKVFSFDLLDSDGGEIR-VTCFNAVVDRFYEIIEVG 184
+++I ARV K + R+ + + F L D +G +I +T V F +
Sbjct: 236 KYSIVARVEVKFPIEPRFRDRQ------HFVLSDINGAKIEAITYMYETVKHFDNFLHEK 289
Query: 185 RVYLIS--KGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIE 242
VY + K SL P + NF HL E+ L+ + V+ T P + ++++I
Sbjct: 290 HVYKMHNVKFSLHPGEFNFRHLNGPMELCLDQQTIVEPYTVPIQMAPFPKQIILNLADIA 349
Query: 243 SAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQ 302
N ++VD++ IV+ ++ + + R+I+ + D G + WGD NK
Sbjct: 350 ELPNRTLVDIMAIVVHLD----TIHRTMWGPFRKIV-IMDARGYLHIIKAWGDLLNKNAL 404
Query: 303 K 303
+
Sbjct: 405 R 405
>gi|428163313|gb|EKX32390.1| hypothetical protein GUITHDRAFT_121440 [Guillardia theta CCMP2712]
Length = 239
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%)
Query: 35 QPVRVNNYSAPNSGTFNLQNSGTFNSQNPGSFSTPNSGTFRAPNAGSIVRSFQPTVQPPY 94
Q ++ N G+F N G+F N GSF N G+F+ N GS RSFQ + +
Sbjct: 68 QGANEGSFQGANEGSFQGANDGSFQGANDGSFQGANDGSFQGANEGSFERSFQGAIHGAF 127
Query: 95 QPP 97
Q
Sbjct: 128 QGA 130
Score = 39.7 bits (91), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 29/72 (40%)
Query: 35 QPVRVNNYSAPNSGTFNLQNSGTFNSQNPGSFSTPNSGTFRAPNAGSIVRSFQPTVQPPY 94
Q ++ N G+F N G+F N GSF N G+F G+I +FQ +
Sbjct: 76 QGANEGSFQGANDGSFQGANDGSFQGANDGSFQGANEGSFERSFQGAIHGAFQGANDGSF 135
Query: 95 QPPPNFRNHGPI 106
Q N G
Sbjct: 136 QGADEGANDGSF 147
>gi|413942291|gb|AFW74940.1| hypothetical protein ZEAMMB73_054394 [Zea mays]
Length = 268
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 8/153 (5%)
Query: 154 SFDLLDSDGGEIR-VTCFNAVVDRFYEIIEVGRVYLIS--KGSLKPAQKNFNHLKNEWEI 210
F D +G +I +T V F ++ VY + K SL P + NF HL E+
Sbjct: 47 HFIFYDINGAKIEAITYMYETVKHFDNLLHEKHVYKMHNVKFSLHPGEFNFRHLNGPMEL 106
Query: 211 FLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNG 270
L+ + V+ T +P + ++++I N ++VD++ IV+ ++ + +
Sbjct: 107 CLDQQTIVEPYTVPIQMVPFPKQILLNLADITELPNRTLVDIMAIVVHLD----TIHRTM 162
Query: 271 METQRRILNLKDTSGRSVELTLWGDFCNKEGQK 303
R+I+ + D G + +WGD NK +
Sbjct: 163 WGPFRKIV-IMDARGYLHIIKVWGDLLNKNALR 194
>gi|413943162|gb|AFW75811.1| hypothetical protein ZEAMMB73_150897 [Zea mays]
Length = 228
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 93/247 (37%), Gaps = 40/247 (16%)
Query: 117 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL--DSDGGEIRVTCFNAVV 174
PI LNP + I+ RV K + R A DG + +L+ D G I A+
Sbjct: 5 PITELNPQKINVVIRVRVIRKWEFR---GATNDGPLRHINLILADEQGTTIHAEIPAALA 61
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
+I++ +VY I + P++ F + N I + + + P ++
Sbjct: 62 TEKGSLIQIDKVYEIRHFRVMPSRGYFKPVHNNLMIQFTLYTQAKVVNDPPHIFPIYIYN 121
Query: 235 FRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWG 294
++E +N + G N R I +KD S S+++TLWG
Sbjct: 122 LTSFEKVEENVDNRNYLIAG-------------YNNSSIVRDIF-IKDISDASLKITLWG 167
Query: 295 D---------FCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSI--GTIPSTQLFINP 343
D CN+ K ++ VG F G+S GT +T F NP
Sbjct: 168 DQASGFSIDNVCNQSNNKPIVIMFVGCL---------AKQFKGQSYLSGTTATTWYF-NP 217
Query: 344 DFAEAHE 350
+ EA E
Sbjct: 218 NIPEAQE 224
>gi|402216670|gb|EJT96754.1| nucleic acid-binding protein [Dacryopinax sp. DJM-731 SS1]
Length = 430
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 88/399 (22%), Positives = 154/399 (38%), Gaps = 59/399 (14%)
Query: 165 IRVTCFNA-VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTE 223
++V F V+D + VG V + L+ Q + W L + VD +
Sbjct: 1 MKVLTFEEEVIDGLLKNTAVGVVMRLESVRLQETQAKYL-----WNGLLPIEAVVDHNSR 55
Query: 224 -----EDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGM------- 271
+D IP IS + + + + V+VIG+V+ V + K +
Sbjct: 56 IEFPLQDHGIPPLSLELTKISLLRAMKVGTEVNVIGVVLHVGEVEAMSEKKRVAGKSGDG 115
Query: 272 -----------ETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKS 320
E RR + L D S V + LW D + V +L +K
Sbjct: 116 ESESEEEDPKGERMRREVQLVDDSAHVVRIALWKDRATS--------MAVKRGSILLLKK 167
Query: 321 GKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATV-SISREIAAG-GAKN 378
+ G S+ T++ +P AE L+ W+++ N T IS +AG G
Sbjct: 168 VVIAAHGGISLNVHEKTKVDKDPKVAEGTSLKNWYNNLASNPQTFRHISSGYSAGSGLFT 227
Query: 379 EIHK-----TVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKV 433
+I T+ +++ LG S + D V I + ++ Y AC + CNK +
Sbjct: 228 DIEPRSSVLTIPEVQKSNLGTSSRVDTFNVEGRIQVVDWNA-VYEACR----NTHCNKSI 282
Query: 434 TQSGNRWQCDRCNQEIDECDYR---YLLQAQI-QDQTGLTWVTAFQESGEEILGCPAKEL 489
+S CD E D R Y L+ I QD+ V F +++L A E+
Sbjct: 283 EKS----PCDIEGHEDMSDDNRRFCYHLKLTIGQDRRRSIDVPVFTPLADKMLEEDATEV 338
Query: 490 YMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDE 528
+K ++ E++ + + ++ F ++ +L+ +E
Sbjct: 339 --VKKRDHTPGQYDEVLGALLKTKWRFTIQACTQLWKNE 375
>gi|226508478|ref|NP_001142593.1| uncharacterized protein LOC100274860 [Zea mays]
gi|195607088|gb|ACG25374.1| hypothetical protein [Zea mays]
Length = 549
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 81/379 (21%), Positives = 148/379 (39%), Gaps = 31/379 (8%)
Query: 118 IAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSD--GGEIRVTCFNAVVD 175
+ L P++ I+ VT K R A + + D++ SD G I + +
Sbjct: 6 LTDLEPHKKHATIQVCVTRKWLFR---GANDNAPLQHVDMILSDQKGNAIYAEIPANLAN 62
Query: 176 RFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSF 235
+ IE GR+Y IS+ + A+ F + + I + V + PK +
Sbjct: 63 QKAPDIEEGRIYNISRFRVCAAKNGFKVVDGDKMIQFTFYTIVKRVIDPPTVFPKYIYRL 122
Query: 236 RHISEIES--AENNSIVDVIGIVISVNPSVPILRKNGME-TQRRILNLKDTSGRSVELTL 292
+IES + +DV+G++I V+ PI ++ + R + ++D S +++TL
Sbjct: 123 TPFDQIESNIQTKPNFLDVLGVIIQVHELTPIHIQSQLNPVLTRSIIIEDLSNTPLKITL 182
Query: 293 WGDFCNKEGQKLQEMVDVGF-FPVLSVKSGKVNDF-SGKSIGTIPSTQLFINPDFAEAHE 350
W D L ++ D P++ + G + F G + + + + NP EA
Sbjct: 183 WAD--QATSFSLHDVYDPNTKKPIIVLFVGCLPKFYKGVYLSGGSACRWYFNPTIPEAEP 240
Query: 351 LREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKN-EGLGRSEKPDWVTV----RA 405
+ T+++ A +K ++ K+ L R D+ +
Sbjct: 241 YH-----TSQQTRTIALQLPHALNHPPTIENKEAAESKSLYDLIRINPYDFPEIGYECTV 295
Query: 406 FITFIK-SDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQD 464
IT I + + Y AC +C K T + C+ CN D+ +RY L+ D
Sbjct: 296 TITEIPVENKWWYPAC------TKCFKASTPQNTVYHCNDCNW--DKYTFRYKLKFLASD 347
Query: 465 QTGLTWVTAFQESGEEILG 483
T + F +I+G
Sbjct: 348 GTETAEMFCFNNIARQIVG 366
>gi|257386633|ref|YP_003176406.1| OB-fold tRNA/helicase-type nucleic acid binding-protein
[Halomicrobium mukohataei DSM 12286]
gi|257168940|gb|ACV46699.1| nucleic acid binding OB-fold tRNA/helicase-type [Halomicrobium
mukohataei DSM 12286]
Length = 482
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 83/185 (44%), Gaps = 20/185 (10%)
Query: 118 IAALNPYQGRWAIKARVTAKGDLRRYNNARG-DGKVFSFDLLDSDGGEIRVTCFNAVVDR 176
I AL+ Q ++ V +R ++ G +G+V + + D + G +RVT ++ DR
Sbjct: 170 IDALSMGQSDVDVRGVVLDTDSIRTFDRDDGSEGRVANLTIGD-ETGRVRVTLWDDRADR 228
Query: 177 FYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFR 236
EI + G I G ++ + + E+ + VD EE +F
Sbjct: 229 AEEI-DPGTAVEIVDGYVREREGSL-------ELHVGDHGAVDEIDEE--------VAFE 272
Query: 237 -HISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGD 295
+ IE E VD+ G+V S +P R +G E Q R + ++D +G + + LWGD
Sbjct: 273 PDAAAIERVEIGETVDIAGVVRSADPKRTFDRDDGSEGQVRNVRIQDATG-DIRVALWGD 331
Query: 296 FCNKE 300
+KE
Sbjct: 332 KADKE 336
>gi|414877715|tpg|DAA54846.1| TPA: hypothetical protein ZEAMMB73_535318 [Zea mays]
Length = 305
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 83/181 (45%), Gaps = 15/181 (8%)
Query: 127 RWAIKARVTAKGDLR-RYNNARGDGKVFSFDLLDSDGGEIR-VTCFNAVVDRFYEIIEVG 184
+++I ARV K + R+++ + F L D +G +I +T V F ++
Sbjct: 78 KYSIVARVEVKFPIEPRFHDRQ------HFVLSDINGAKIEAITYMYETVKHFDNLLHEK 131
Query: 185 RVYLIS--KGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIE 242
VY + K SL P + NF HL ++ L + V+ T P + F ++++I
Sbjct: 132 HVYKMHNVKFSLHPGEFNFRHLNGPMKLCLNQQAIVEPYTFPIQMTPFPKQIFLNLADIV 191
Query: 243 SAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQ 302
N ++VD++ IV+ ++ + + R+I+ + D G + +WGD NK
Sbjct: 192 ELPNMTLVDIMAIVVHMD----TIHRTMWGPFRKIV-IMDARGSLHIIKVWGDLLNKNAL 246
Query: 303 K 303
+
Sbjct: 247 R 247
>gi|413949178|gb|AFW81827.1| hypothetical protein ZEAMMB73_139507 [Zea mays]
Length = 263
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 80/181 (44%), Gaps = 9/181 (4%)
Query: 117 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL--DSDGGEIRVTCFNAVV 174
PIA L+P AI+ + K + R A DG + +L+ D G I A+V
Sbjct: 5 PIAELDPKSTNAAIRVCIIRKWEFR---GATNDGPLRHVNLILADEQGTAIHAEIQAALV 61
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
D +I++ +VY + + + P++ + + N I + + + + P+ +
Sbjct: 62 DDKGSLIQIDKVYELKRFRVTPSRNYYKPVDNSMMIQFTLYTQAKVVEDPPPTFPRYAYK 121
Query: 235 FRHISEIESAENNS--IVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTL 292
I + +N ++DV+GI+ + S+ + N R I LKD + S ++TL
Sbjct: 122 LTSFENIGNNVDNKTYLIDVLGILTEIG-SLHHVGYNNSNIIRDIF-LKDINNTSTKVTL 179
Query: 293 W 293
W
Sbjct: 180 W 180
>gi|22857582|gb|AAN09856.1| putative DNA binding protein [Oryza sativa Japonica Group]
gi|31430721|gb|AAP52594.1| hypothetical protein LOC_Os10g11780 [Oryza sativa Japonica Group]
Length = 454
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 71/161 (44%), Gaps = 8/161 (4%)
Query: 130 IKARVTAKGDLRRYNNARGDGKVFSFDL--LDSDGGEIRVTCFNAVVDRFYEIIEVGRVY 187
I ARV+ L + + D K+F DL LD G I + + ++ +++ +VY
Sbjct: 18 IHARVS---RLWNFTDLNDDTKIFHTDLVLLDEIGTSIHAQIYPPITEKMKPLLKEEKVY 74
Query: 188 LISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIES-AEN 246
I +++ A + + + N I +T++ P FS ++ S E
Sbjct: 75 YIDSFTIRAANRTYRPVANNLMILFSKWTTLEEHINVPPHFPSITFSLTPFEDVPSLVEK 134
Query: 247 NSI-VDVIGIVISVNPSVPILRKN-GMETQRRILNLKDTSG 285
NS VD++G++ V I K+ E+ +R L ++D S
Sbjct: 135 NSFYVDIMGVITEVGAVTTIRPKSRNAESLKRTLQIRDASA 175
>gi|413943366|gb|AFW76015.1| hypothetical protein ZEAMMB73_328795 [Zea mays]
Length = 378
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 67/318 (21%), Positives = 128/318 (40%), Gaps = 32/318 (10%)
Query: 180 IIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHIS 239
+IE ++Y IS+ + A+ + + + I + + + + P +
Sbjct: 36 LIETNQIYDISRFRVTAAKTTYKPIDGDKMIQFTTYTIIKPASNPPPTFPLYIYQLTPFD 95
Query: 240 EIES--AENNSIVDVIGIVISVNPSVPILRKNGM--ETQRRILNLKDTSGRSVELTLWGD 295
EIES +DV+G + V ++ + G T R + ++D S +++++TLW
Sbjct: 96 EIESQIQHKTKFLDVLGTITEVT-ALKTVHIQGQLNPTIIRDVMIEDLSRKTLKITLWAK 154
Query: 296 FCNKEGQKLQEMVD-VGFFPVLSVKSGKVNDF-SGKSIGTIPSTQLFINPDFAEAHELRE 353
+Q++ D V P+L++ G + F G + + + NP EA +
Sbjct: 155 --RATSFTIQDVYDPVSKKPILALFVGCLPKFYKGVYLSGGAACHWYFNPTIPEAEAYQN 212
Query: 354 WFDSGGKNAATVSISREIAAGGAKNEI------HKTVSQIKNEGLGRSEKPDW-VTVRAF 406
GG+ T+ + A HKT+ Q+ + + PD A
Sbjct: 213 --RRGGE---TIQLHLPTQPKHALQTFQPPTIEHKTLEQLLT--MNPYDYPDTGYECTAT 265
Query: 407 ITFI-KSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQ 465
IT I S+++ Y +C +C +K T + CD C + D ++Y L+ + D
Sbjct: 266 ITEIDTSNTWWYPSC------TKCGRKTTPHNIAYYCDWC--KWDGYKFKYKLKFRASDA 317
Query: 466 TGLTWVTAFQESGEEILG 483
T + + F I+G
Sbjct: 318 TAMAQMFCFDNIARYIVG 335
>gi|413956456|gb|AFW89105.1| hypothetical protein ZEAMMB73_316315 [Zea mays]
Length = 286
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 69/153 (45%), Gaps = 8/153 (5%)
Query: 154 SFDLLDSDGGEIR-VTCFNAVVDRFYEIIEVGRVYLIS--KGSLKPAQKNFNHLKNEWEI 210
F L D +G +I +T V F ++ VY + K SL P + NF HL E+
Sbjct: 68 HFVLSDINGAKIEAITYMYETVKHFDNLLHEKHVYKMHNVKFSLHPGEFNFRHLNGPMEL 127
Query: 211 FLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNG 270
L+ + V+ T P + ++++I N ++VD++ IV+ ++ + +
Sbjct: 128 CLDQQTIVEPYTVPIQMAPFPKQILLNLADIAELPNRTLVDIMAIVVHLD----TIHRTM 183
Query: 271 METQRRILNLKDTSGRSVELTLWGDFCNKEGQK 303
R+I+ + D G + +WGD NK +
Sbjct: 184 WGPFRKIV-IMDARGYLHIIKVWGDLLNKNALR 215
>gi|413915876|gb|AFW55808.1| hypothetical protein ZEAMMB73_980277 [Zea mays]
Length = 421
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 69/152 (45%), Gaps = 8/152 (5%)
Query: 155 FDLLDSDGGEIR-VTCFNAVVDRFYEIIEVGRVYLIS--KGSLKPAQKNFNHLKNEWEIF 211
F L D +G +I +T V F ++ VY + K SL P + NF HL E+
Sbjct: 204 FVLSDINGAKIEAITYMYETVKHFDNLLHEKHVYKMHNVKFSLHPGEFNFRHLNGPMELC 263
Query: 212 LEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGM 271
L+ + V+ T P + ++++I N ++VD++ +V+ ++ + +
Sbjct: 264 LDQQTIVEPYTVPIQMAPFPKQILLNLADIAELLNRTLVDIMAVVVHLD----TIHRTMW 319
Query: 272 ETQRRILNLKDTSGRSVELTLWGDFCNKEGQK 303
R+I+ + D G + +WGD NK +
Sbjct: 320 GPFRKIV-IMDARGYLHIIKVWGDLLNKNALR 350
>gi|414888072|tpg|DAA64086.1| TPA: hypothetical protein ZEAMMB73_996720 [Zea mays]
Length = 238
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/186 (20%), Positives = 86/186 (46%), Gaps = 15/186 (8%)
Query: 117 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTC----FNA 172
P++AL ++ +V K + R A +G + D++ +D + C F A
Sbjct: 5 PLSALTLQDRNAEVQIQVHRKWEFR---GAVDNGPILHIDMILTDCTGNAIHCQIPSFLA 61
Query: 173 VV--DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPK 230
D F +VG++Y +++ S+ A+ + + + ++++ +T++LC P
Sbjct: 62 ATRGDEF----QVGKIYKMTRFSVARAKSTYKPVDGDLMLYVKPYTTLELCHTSPSGFPL 117
Query: 231 QQFSFRHISEIESAENNS--IVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSV 288
+ +I+ +N+ DV+GI+ ++ P+ + + R + +K+ S +
Sbjct: 118 YVYHLTSYDKIDPDGSNARNFHDVLGIITEISAIKPVGNAHIPSSYNRHVLIKNLSDDIL 177
Query: 289 ELTLWG 294
++TLWG
Sbjct: 178 KITLWG 183
>gi|413933866|gb|AFW68417.1| hypothetical protein ZEAMMB73_453988 [Zea mays]
Length = 277
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 82/181 (45%), Gaps = 15/181 (8%)
Query: 127 RWAIKARVTAKGDLR-RYNNARGDGKVFSFDLLDSDGGEIR-VTCFNAVVDRFYEIIEVG 184
+++I ARV K + R+ + + F L D +G +I +T V F ++
Sbjct: 37 KYSIVARVEVKFPIEPRFRDRQ------HFVLSDINGAKIEAITYMYETVKHFDNLLHEK 90
Query: 185 RVYLIS--KGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIE 242
VY + K SL P + NF HL E+ L+ + V+ T P + ++++I
Sbjct: 91 HVYKMHNVKFSLHPGEFNFRHLNGPMELCLDQQTIVEPYTVPIQMAPFPKQILLNLADIA 150
Query: 243 SAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQ 302
N ++VD++ +V+ ++ + + R+I+ + D G + +WGD NK
Sbjct: 151 ELPNRTLVDIMAVVVHLD----TIHRTMWGPFRKIV-IMDARGYLHIIKVWGDLLNKNAL 205
Query: 303 K 303
+
Sbjct: 206 R 206
>gi|413946437|gb|AFW79086.1| hypothetical protein ZEAMMB73_648496 [Zea mays]
Length = 277
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 82/181 (45%), Gaps = 15/181 (8%)
Query: 127 RWAIKARVTAKGDLR-RYNNARGDGKVFSFDLLDSDGGEIR-VTCFNAVVDRFYEIIEVG 184
+++I ARV K + R+ + + F L D +G +I +T V F ++
Sbjct: 37 KYSIVARVEVKFPIEPRFRDRQ------HFVLSDINGAKIEAITYMYETVKHFDNLLHEK 90
Query: 185 RVYLIS--KGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIE 242
VY + K SL P + NF HL E+ L+ + V+ T P + ++++I
Sbjct: 91 HVYKMHNVKFSLHPGEFNFRHLNGPMELCLDQQTIVEPYTVPIQMAPFPKQILLNLADIA 150
Query: 243 SAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQ 302
N ++VD++ +V+ ++ + + R+I+ + D G + +WGD NK
Sbjct: 151 ELPNRTLVDIMAVVVHLD----TIHRTMWGPFRKIV-IMDARGYLHIIKVWGDLLNKNAL 205
Query: 303 K 303
+
Sbjct: 206 R 206
>gi|297719755|ref|NP_001172239.1| Os01g0223400 [Oryza sativa Japonica Group]
gi|56783998|dbj|BAD81453.1| unknown protein [Oryza sativa Japonica Group]
gi|56784071|dbj|BAD81308.1| unknown protein [Oryza sativa Japonica Group]
gi|255673012|dbj|BAH90969.1| Os01g0223400 [Oryza sativa Japonica Group]
Length = 249
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 91/222 (40%), Gaps = 25/222 (11%)
Query: 143 YNNARGDGKVFSFDL--LDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKN 200
+ + + D K+ F L +D G I + + F II G+VY I ++ +
Sbjct: 38 FCDQKDDDKILHFGLVLIDEKGTSIAAQIYPPCDEIFRPIITEGKVYYIKYFRVRKCNRQ 97
Query: 201 FNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIES--AENNSIVDVIGIVIS 258
+ + N I+ + ++ + IP +S + S + +S D+IGI+
Sbjct: 98 YKPVDNCMSIYFTRWTKLEERVDPPAEIPLYTYSLSPFGGLRSRVGKKDSFTDIIGIITQ 157
Query: 259 VNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNK--------EGQKLQEMVDV 310
++P P+ T +R + +++T + + LWG+ GQK ++V
Sbjct: 158 LSPVTPL-----QGTVKRSVFIRNTDNAILNVALWGERATSFPADEVFVAGQKEPQIVI- 211
Query: 311 GFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELR 352
F L G V+ SG S + + +IN D E LR
Sbjct: 212 -FVGTLVKGYGDVS-LSGNS-----ACKWYINADTPEVISLR 246
>gi|359493963|ref|XP_003634702.1| PREDICTED: replication factor A protein 1-like [Vitis vinifera]
gi|302143225|emb|CBI20520.3| unnamed protein product [Vitis vinifera]
Length = 75
Score = 48.5 bits (114), Expect = 0.009, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 440 WQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYE 495
+ C+ C + DEC RY++ ++ D +G W++ F E E I G A EL LK +
Sbjct: 9 YWCEGCQKNDDECSLRYIMVVKVSDASGEAWLSLFNEQAERIFGYSADELDKLKSQ 64
>gi|222478550|ref|YP_002564787.1| replication factor A [Halorubrum lacusprofundi ATCC 49239]
gi|222451452|gb|ACM55717.1| nucleic acid binding OB-fold tRNA/helicase-type [Halorubrum
lacusprofundi ATCC 49239]
Length = 501
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 20/168 (11%)
Query: 163 GEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCT 222
G +RVT ++ D E E G V + G ++ + E+ + TV+
Sbjct: 210 GRVRVTLWDDKAD-LVEEFEAGEVVEVGDGYVRERDGDL-------ELHVGDRGTVERVD 261
Query: 223 EEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKD 282
E+ + +P+ I+E+E E VD+ G VI +P R +G E Q R + +KD
Sbjct: 262 EDVEYVPETT----DIAELEIGET---VDIGGGVIETDPKRTFDRDDGSEGQVRNVRIKD 314
Query: 283 TSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKS 330
+G + + LWGD ++E E+ D F + V+ G +D +
Sbjct: 315 DTG-EIRVALWGDKADRE----IELADRVVFTDVEVQDGWQDDLEASA 357
Score = 38.9 bits (89), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 82/184 (44%), Gaps = 20/184 (10%)
Query: 118 IAALNPYQGRWAIKARVTAKGDLRRYNNARGD---GKVFSFDLLDSDGGEIRVTCFNAVV 174
IA + P +VT+ GD+R + D G+V + D+ D+ G +RV ++ +
Sbjct: 56 IADIEPGMNDVKFLGKVTSIGDIRTFERDDEDAEEGRVCNVDVADA-SGSVRVALWDDMA 114
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
E +EVG+V + + ++ ++ L+ S + +ED + Q
Sbjct: 115 AAAEEQLEVGQVLRV----MGRPKEGYSGLE---------VSADKVEPDEDAEVDVQVLD 161
Query: 235 FRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWG 294
+ ++ ++ VD++G V+ + R +G E + L + D +GR V +TLW
Sbjct: 162 TYRVEDLSLGASD--VDLVGQVLDTDSIRTFDRDDGSEGRVANLTVGDETGR-VRVTLWD 218
Query: 295 DFCN 298
D +
Sbjct: 219 DKAD 222
>gi|448497562|ref|ZP_21610515.1| replication factor A [Halorubrum coriense DSM 10284]
gi|445699793|gb|ELZ51813.1| replication factor A [Halorubrum coriense DSM 10284]
Length = 493
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 85/192 (44%), Gaps = 22/192 (11%)
Query: 140 LRRYNNARG-DGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQ 198
+R ++ G +G+V + L D G +RVT ++ D E G V + G ++
Sbjct: 187 IRTFDRDDGSEGRVANLTLGDE-TGRVRVTLWDGKAD-LAEEFAAGEVVEVGDGYVRERD 244
Query: 199 KNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVIS 258
+ E+ + TV+ E+ + +P+ ++I E + VDV G VI
Sbjct: 245 GDL-------ELHVGDRGTVERVDEDVEYVPE-------TTDIADLEIDQTVDVGGGVIE 290
Query: 259 VNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSV 318
+P R +G E Q R + +KD +G + + LWGD ++E E+ D F + V
Sbjct: 291 TDPKRTFDRDDGSEGQVRNVRIKDETG-EIRVALWGDKADRE----IELADRVVFTDVEV 345
Query: 319 KSGKVNDFSGKS 330
+ G +D +
Sbjct: 346 QDGWQDDLEASA 357
>gi|414878207|tpg|DAA55338.1| TPA: hypothetical protein ZEAMMB73_182758 [Zea mays]
Length = 353
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 69/153 (45%), Gaps = 8/153 (5%)
Query: 154 SFDLLDSDGGEIR-VTCFNAVVDRFYEIIEVGRVYLIS--KGSLKPAQKNFNHLKNEWEI 210
F L D +G +I +T V F ++ VY + K SL P + NF HL E+
Sbjct: 59 HFVLSDINGAKIEAITYMYETVKHFDNLLHEKHVYKMHNVKFSLHPGEFNFRHLNGPMEL 118
Query: 211 FLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNG 270
L+ + V+ T P + ++++I N ++VD++ IV+ ++ + +
Sbjct: 119 CLDQQTIVEPYTVPIQMAPFPKQILLNLADIAELPNRTLVDIMAIVVHLD----TIHRTM 174
Query: 271 METQRRILNLKDTSGRSVELTLWGDFCNKEGQK 303
R+I+ + D G + +WGD NK +
Sbjct: 175 WGPFRKIV-IMDARGYLHIIKVWGDLLNKNALR 206
>gi|414877314|tpg|DAA54445.1| TPA: hypothetical protein ZEAMMB73_823790 [Zea mays]
Length = 277
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 70/153 (45%), Gaps = 8/153 (5%)
Query: 154 SFDLLDSDGGEIR-VTCFNAVVDRFYEIIEVGRVYLIS--KGSLKPAQKNFNHLKNEWEI 210
F L D +G +I +T V F ++ VY + K SL P + NF HL E+
Sbjct: 59 HFVLSDINGSKIEAITYMYETVKHFDNLLHEKHVYKMHNVKFSLHPGEFNFRHLNGPMEL 118
Query: 211 FLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNG 270
L+ + V+ T P + ++++I N ++VD++ +V+ ++ +++
Sbjct: 119 CLDQQTIVEPYTVPIQMAPFPKQILLNLADIAELPNRTLVDIMAVVVHLD----TIQRTM 174
Query: 271 METQRRILNLKDTSGRSVELTLWGDFCNKEGQK 303
R+I+ + D G + +WGD NK +
Sbjct: 175 WGPFRKIV-IMDARGYLHIIKVWGDLLNKNALR 206
>gi|413939632|gb|AFW74183.1| hypothetical protein ZEAMMB73_040811 [Zea mays]
Length = 402
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 80/179 (44%), Gaps = 15/179 (8%)
Query: 127 RWAIKARVTAKGDLR-RYNNARGDGKVFSFDLLDSDGGEIR-VTCFNAVVDRFYEIIEVG 184
+++I ARV K + R+ + + F L D +G +I +T V F ++
Sbjct: 162 KYSIVARVEVKFPIEPRFRDRQ------HFVLSDINGAKIEAITYMYETVKHFDNLLHEK 215
Query: 185 RVYLIS--KGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIE 242
VY + K SL P + NF HL E+ L+ + V+ T P + ++ +I
Sbjct: 216 HVYKMHNVKFSLHPGEFNFRHLNGPMELCLDQQTIVEPYTVPIQMAPFPKQILLNLVDIA 275
Query: 243 SAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEG 301
N ++VD++ +V+ ++ + + R+I+ + D G + +WGD NK
Sbjct: 276 ELPNRTLVDIMAVVVHLD----TIHRTMWGPFRKIV-IMDARGYLHIIKVWGDLLNKNA 329
>gi|448451265|ref|ZP_21592748.1| replication factor A [Halorubrum litoreum JCM 13561]
gi|445810699|gb|EMA60715.1| replication factor A [Halorubrum litoreum JCM 13561]
Length = 512
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 20/168 (11%)
Query: 163 GEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCT 222
G +RVT ++ D E E G+V + G ++ + E+ + TV+
Sbjct: 221 GRVRVTLWDGKAD-LAEEFEAGQVVEVGDGYVRERDGDL-------ELHVGDRGTVERVD 272
Query: 223 EEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKD 282
E+ + +P+ ++I E VDV G VI +P R +G E Q R + +KD
Sbjct: 273 EDVEYVPE-------TTDIADLEIGETVDVGGGVIETDPVRTFDRDDGSEGQVRNVRIKD 325
Query: 283 TSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKS 330
+G + + LWGD ++E E+ D F + ++ G +D +
Sbjct: 326 ETG-EIRVALWGDKADRE----IELADRVVFTDVEIQDGWQDDLEASA 368
>gi|448427497|ref|ZP_21583812.1| replication factor A [Halorubrum terrestre JCM 10247]
gi|445678184|gb|ELZ30678.1| replication factor A [Halorubrum terrestre JCM 10247]
Length = 512
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 20/168 (11%)
Query: 163 GEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCT 222
G +RVT ++ D E E G+V + G ++ + E+ + TV+
Sbjct: 221 GRVRVTLWDGKAD-LAEEFEAGQVVEVGDGYVRERDGDL-------ELHVGDRGTVERVD 272
Query: 223 EEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKD 282
E+ + +P+ ++I E VDV G VI +P R +G E Q R + +KD
Sbjct: 273 EDVEYVPE-------TTDIADLEIGETVDVGGGVIETDPVRTFDRDDGSEGQVRNVRIKD 325
Query: 283 TSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKS 330
+G + + LWGD ++E E+ D F + ++ G +D +
Sbjct: 326 ETG-EIRVALWGDKADRE----IELADRVVFTDVEIQDGWQDDLEASA 368
>gi|300681310|emb|CAZ96018.1| conserved hypothetical protein [Saccharum hybrid cultivar]
Length = 508
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 86/202 (42%), Gaps = 16/202 (7%)
Query: 157 LLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATS 216
L D+ G + + ++ + +VG+VY++ K + A+K++ + I + +
Sbjct: 45 LADAQGHAMYAEIADDLIGEKACLFDVGKVYVLKKFVVNNAKKSYRAVDRNLLINISQHT 104
Query: 217 TVDLCTEEDDSIPKQQFSFRHISEIESAE-NNSIVDVIGIVISVNPSVPILRKNGMETQR 275
TV + SIP+ + + I+ + D IG +I + + KN + +
Sbjct: 105 TVQVVPNPPSSIPEYIYRITPLPAIKPVRFVYNYTDTIGYLIKYKAAHTFVPKNKEKAKT 164
Query: 276 -RILNLKDTSGRSVELTLWG---------DFCNKEGQKLQEMVDVGFFPVLSVKSGKVND 325
R + +KD S +++TLWG D ++E L + VG +P + +
Sbjct: 165 LREIYIKDLSDNVMQVTLWGDQATGFNISDIYDREAGNLIVCLIVGCYPREDLMNNNKPC 224
Query: 326 FSGKSIGTIPSTQLFINPDFAE 347
SG P+ ++NP+ E
Sbjct: 225 LSGS-----PACSCYLNPNIPE 241
>gi|261349815|ref|ZP_05975232.1| replication factor A related protein [Methanobrevibacter smithii
DSM 2374]
gi|288860599|gb|EFC92897.1| replication factor A related protein [Methanobrevibacter smithii
DSM 2374]
Length = 800
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 60/271 (22%), Positives = 111/271 (40%), Gaps = 52/271 (19%)
Query: 227 SIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGR 286
+I +S + I+++E E++ + V G +I + R +G + + L + D SG
Sbjct: 528 TIETMLYSHKSIADVE--EDDEGIIVTGRIIESSDVREFDRTDGSKGYVKSLEIADNSG- 584
Query: 287 SVELTLWGDFCNKE-----GQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFI 341
S+ +TLW + KE K Q+ P +S ++ + I ST + +
Sbjct: 585 SINVTLWNENAKKEWNVGDAIKFQD-------PQISFRNDSL------EINVSRSTSI-L 630
Query: 342 NPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWV 401
PD +E +L + + SI + KT+ ++N+ V
Sbjct: 631 EPDESEIDDLPTY------DELKESIY-----------VPKTIEALENDDRN-------V 666
Query: 402 TVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQ 461
+ + + + T CP C V QS + + C C + IDE Y ++ A+
Sbjct: 667 RITGTLKEVFGNKILITKCP------SCGNTVDQSSDDFVCSFCGEPIDEPRYLLMVPAR 720
Query: 462 IQDQTGLTWVTAFQESGEEILGCPAKELYML 492
++D TG +T F EE+L +++ L
Sbjct: 721 LEDDTGEISITFFDNLAEELLDMKKEDIINL 751
>gi|391333730|ref|XP_003741263.1| PREDICTED: uncharacterized protein LOC100898546 [Metaseiulus
occidentalis]
Length = 183
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 66/139 (47%), Gaps = 18/139 (12%)
Query: 226 DSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSG 285
D +P+ Q +S++ + NS++D+ ++ V P +G Q++I+ + D S
Sbjct: 43 DDLPEIQSLTTILSDLATKPANSVIDIRVVIFDVRPPQSFTCHDGTSRQKQIITVLDKSM 102
Query: 286 RSVELTLWGDFC----NKEGQKLQEMVDVGFFPVLSVKSGKVNDFSG-KSIGTIPSTQLF 340
R + + +W DF +KEGQ + ++ ++ D+ G + + + +T L
Sbjct: 103 RMINVGVWSDFVGKFDDKEGQAVIN------------RNLQIRDYKGVRQLSSTSNTMLA 150
Query: 341 INPDFAEAHELREWFDSGG 359
D E EL+ WF++ G
Sbjct: 151 AITD-TETRELQTWFETTG 168
>gi|413923940|gb|AFW63872.1| hypothetical protein ZEAMMB73_151869 [Zea mays]
Length = 414
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 53/250 (21%), Positives = 94/250 (37%), Gaps = 30/250 (12%)
Query: 251 DVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWG---------DFCNKEG 301
DV+G++ +NP P L T R + +K+TS S+++TLWG D N+
Sbjct: 31 DVLGMLTQINP--PHLIGYNNSTIIRDIFIKNTSDMSLKITLWGNQASSFSISDVYNQSN 88
Query: 302 QKLQEMVDVGFFPVLSVKSGKVNDFSGKS-IGTIPSTQLFINPDFAEAHELREWFDSGG- 359
+ ++ VGF F G+ + + ++ + NP EA +
Sbjct: 89 NQPIVILLVGFL---------AKRFKGQPYLSSTTASSWYFNPGIPEAQTYYNRLQNNDL 139
Query: 360 KNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTA 419
+ + EI N KTV ++ N L + +++ + Y +
Sbjct: 140 QQIQPTAAEEEILLSQPPNLDQKTVEELLNIDLDMFPPEGYRCTVTISRIVQNSKWWYPS 199
Query: 420 CPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGE 479
C +C+K +Q+ + C C + ++RY L D T F
Sbjct: 200 C------SRCHKSSSQTSTGYHCTSCG--CTDINFRYKLNFIATDGTCEAEFFCFDSIAR 251
Query: 480 EILGCPAKEL 489
+I+G P L
Sbjct: 252 KIVGKPCDNL 261
>gi|448684242|ref|ZP_21692707.1| replication factor A [Haloarcula japonica DSM 6131]
gi|445783115|gb|EMA33951.1| replication factor A [Haloarcula japonica DSM 6131]
Length = 486
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 85/191 (44%), Gaps = 20/191 (10%)
Query: 112 PARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARG-DGKVFSFDLLDSDGGEIRVTCF 170
P I AL Q +++ V +R ++ G +G+V + L D G IRVT +
Sbjct: 159 PGAGSSIDALTMGQSDVSLRGLVLDTDSIRTFDRDDGSEGRVSNLTLGDE-TGRIRVTLW 217
Query: 171 NAVVDRFYEIIEVGRVYLISKGSLKPAQKNFN-HLKNEWEIFLEATSTVDLCTEEDDSIP 229
+ DR E+ + G I G ++ + H+ ++ + D E D+ P
Sbjct: 218 DDRADRAEEL-DAGAAVEIIDGYVRERDGSLELHVGDQGAV----DEVEDDVAFEPDANP 272
Query: 230 KQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVE 289
ISE+E E VD+ G+V S +P R +G E Q R + ++D +G +
Sbjct: 273 --------ISEVELEET---VDIAGVVRSADPKRTFDRDDGSEGQVRNVRIQDATG-DIR 320
Query: 290 LTLWGDFCNKE 300
+ LWGD +K+
Sbjct: 321 VALWGDKADKD 331
>gi|321453826|gb|EFX65027.1| hypothetical protein DAPPUDRAFT_333603 [Daphnia pulex]
Length = 284
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 76/180 (42%), Gaps = 23/180 (12%)
Query: 116 IPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVD 175
I + L+PY RW I+ RV + R +GD +F F LLDS G ++ F +
Sbjct: 38 IDVNKLSPYLRRWKIRGRVCR---ISRLFPFKGDRNMFYFGLLDS-SGLLKNKAFGEDAE 93
Query: 176 RFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSF 235
++Y I N LK +E+ L S V+ E+DD+ P+ +
Sbjct: 94 KYYGI----------------NPNNIFPLK--FEVILAKESEVERL-EQDDTFPRLKVVK 134
Query: 236 RHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGD 295
+ ++ + + D+ IV V + + + + + + G +V++TLW D
Sbjct: 135 YDLKKVRDLPHGTFFDIEVIVYKAGCVVDVRKGELRKLELEVFDASMKPGETVKVTLWND 194
>gi|356545383|ref|XP_003541123.1| PREDICTED: uncharacterized protein LOC100814355 [Glycine max]
Length = 570
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 66/143 (46%), Gaps = 9/143 (6%)
Query: 157 LLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATS 216
++DSDG +I V C + + ++ G Y++ + + + +++ +
Sbjct: 377 IVDSDGDQIHVVCKQDQLKTWKMDLKEGCTYVMHNFRVSKNDGQYRVCDHPYKLTFIEVT 436
Query: 217 TVDLCTEEDDSIPKQQFSFRHISEIESAENNS--IVDVIGIVISVNPSVPILRKNGMETQ 274
V C E D +P + + F S++ +++ S +VD+IG+V V + R ++
Sbjct: 437 VVRQC--ELDGLPFKNYRFADFSDVVASQLQSGLLVDIIGVVDEV-----VFRHISSRSK 489
Query: 275 RRILNLKDTSGRSVELTLWGDFC 297
R + L + S + + TLW D C
Sbjct: 490 RVVFKLMNLSNQLLSCTLWDDHC 512
>gi|224138504|ref|XP_002326619.1| predicted protein [Populus trichocarpa]
gi|222833941|gb|EEE72418.1| predicted protein [Populus trichocarpa]
Length = 546
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 103/234 (44%), Gaps = 31/234 (13%)
Query: 228 IPKQQFSFRHISEIESAENNS--IVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSG 285
+P+ F+F + + + E S ++DV+G + ++ P +L + T ++ +++ G
Sbjct: 111 VPRHYFNFIDFAHLLTKEKGSRTLIDVLGRLKAIQPLEQVLVRGQDITDKKEFIIENIMG 170
Query: 286 RSVELTLWGDFCNK-EGQKLQEMVDVGFFPVLSVKSG-KVNDFSGK-SIGTIPSTQLFIN 342
+ +TLWGD + L E + P++ V +G +V +F GK ++ + ++ + N
Sbjct: 171 DELRITLWGDVAKSFDDFVLHEHTN----PIIVVFAGFRVTEFKGKPNLASTVASFWYFN 226
Query: 343 PDFAEAHELR--------EWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGR 394
P+ E + E + A SI ++I NE KT+ +I
Sbjct: 227 PEIPEILPYKHHYNQLPVEVYQLPASMNAVRSIEQQI------NENRKTIKEILCMD-PY 279
Query: 395 SEKPDWVTVRAFIT-FIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQ 447
K + T +A I + + Y +CPL C K ++ G ++C N+
Sbjct: 280 EHKSERCTYKASIADYDLHRGWWYQSCPL------CTKSLSDKGTIFRCIEHNE 327
>gi|148643392|ref|YP_001273905.1| replication factor A [Methanobrevibacter smithii ATCC 35061]
gi|148552409|gb|ABQ87537.1| ssDNA-binding protein [Methanobrevibacter smithii ATCC 35061]
Length = 793
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 60/271 (22%), Positives = 111/271 (40%), Gaps = 52/271 (19%)
Query: 227 SIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGR 286
+I +S + I+++E E++ + V G +I + R +G + + L + D SG
Sbjct: 521 TIETMLYSHKSIADVE--EDDEGIIVTGRIIESSDVREFDRTDGSKGYVKSLEIADNSG- 577
Query: 287 SVELTLWGDFCNKE-----GQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFI 341
S+ +TLW + KE K Q+ P +S ++ + I ST + +
Sbjct: 578 SINVTLWNENAKKEWNVGDAIKFQD-------PQISFRNDSL------EINVSRSTSI-L 623
Query: 342 NPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWV 401
PD +E +L + + SI + KT+ ++++ V
Sbjct: 624 EPDESEIDDLPTY------DELKESIY-----------VPKTIEALEDDDRN-------V 659
Query: 402 TVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQ 461
+ + + + T CP C V QS + + C C + IDE Y ++ A+
Sbjct: 660 RITGTLKEVFGNKILITKCP------SCGNTVDQSSDDFVCSFCGEPIDEPRYLLMVPAR 713
Query: 462 IQDQTGLTWVTAFQESGEEILGCPAKELYML 492
++D TG +T F EE+L +E+ L
Sbjct: 714 LEDDTGEISITFFDNLAEELLDMKKEEIINL 744
Score = 39.3 bits (90), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 106/246 (43%), Gaps = 28/246 (11%)
Query: 110 EAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTC 169
E +I I L P + + I AR+ R Y +GKV S +L D+ GEI T
Sbjct: 173 EYEEKITDIEDLVP-ETKANIIARIVRIPTPRTYEKNGKEGKVTSLELKDA-TGEISYTL 230
Query: 170 FNAVVDRFYEI-IEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSI 228
+N VD E+ ++ G I ++ ++N W+ + D +
Sbjct: 231 WNKNVDLIDELGLDAGDSVKILGAQVR--ERNGELSLTHWD---------GRIIKGDFDV 279
Query: 229 PKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRK-NGMETQRRILNLKDTSGRS 287
P+ F I +I E N+I + G++ + RK +G E + R ++ D +G S
Sbjct: 280 PEFTQEFIKIGDI--TEQNNIA-IKGVISKLQDIRTFTRKSDGSEGKLRNFDVSDDTG-S 335
Query: 288 VELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDF--SGKSIGTIPSTQLFINPDF 345
+ T+WG+ + ++ G + + +D+ SG S+ T +TQL INP+
Sbjct: 336 IRTTIWGNDTDI-------LLTKGDIVKIIGADARFDDYTDSGYSLNTNFNTQLSINPEN 388
Query: 346 AEAHEL 351
A EL
Sbjct: 389 LSAEEL 394
>gi|297724803|ref|NP_001174765.1| Os06g0329200 [Oryza sativa Japonica Group]
gi|255677008|dbj|BAH93493.1| Os06g0329200 [Oryza sativa Japonica Group]
Length = 225
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
Query: 130 IKARVTAKGDLRRYNNARGDGKVFSFDL--LDSDGGEIRVTCFNAVVDRFYEIIEVGRVY 187
IK R++ D N+ + K++ +L LD G I V + ++ ++F ++++ G+VY
Sbjct: 81 IKTRLSRLWDFHDIND---EEKIYHTELVLLDETGASIHVQIYPSLRNKFKDLLQQGKVY 137
Query: 188 LISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIES 243
I S++ A + + + N I +T++ C E D+ P FS ++ S
Sbjct: 138 YIDSFSVRYANRTYRPVANPLMISFTKWTTLEECIEIPDNFPSITFSLTPFQDVPS 193
>gi|413921626|gb|AFW61558.1| hypothetical protein ZEAMMB73_191775 [Zea mays]
Length = 277
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 79/180 (43%), Gaps = 13/180 (7%)
Query: 127 RWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIR-VTCFNAVVDRFYEIIEVGR 185
+++I ARV K + R F L D +G +I +T V F ++
Sbjct: 37 KYSIVARVEVKFPIEPRFRERQ-----HFVLSDINGAKIEAITYMYETVKHFDNLLHEKH 91
Query: 186 VYLIS--KGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIES 243
VY + K +L P + NF HL E+ L+ + V+ T P + ++++I
Sbjct: 92 VYKMHNVKFNLHPGEFNFRHLNGPMELCLDQQAIVEPYTVPIQMAPFPKQILLNLADIAE 151
Query: 244 AENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQK 303
N ++VD++ +V+ ++ + + R+I+ + D G + +WGD NK +
Sbjct: 152 LPNRTLVDIMAVVVHLD----TIHRTMWGPFRKIV-IMDARGYLHIIKVWGDLLNKNALR 206
>gi|448482817|ref|ZP_21605588.1| replication factor A [Halorubrum arcis JCM 13916]
gi|445821103|gb|EMA70899.1| replication factor A [Halorubrum arcis JCM 13916]
Length = 501
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 73/168 (43%), Gaps = 20/168 (11%)
Query: 163 GEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCT 222
G +RVT ++ D E E G V + G ++ + E+ + TV+
Sbjct: 210 GRVRVTLWDGKAD-LAEEFEAGEVVEVGDGYVRERDGDL-------ELHVGDRGTVERVD 261
Query: 223 EEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKD 282
E+ + +P+ ++I E VDV G VI +P R +G E Q R + +KD
Sbjct: 262 EDVEYVPE-------TTDIADLEIGETVDVGGGVIETDPVRTFDRDDGSEGQVRNVRIKD 314
Query: 283 TSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKS 330
+G + + LWGD ++E E+ D F + ++ G +D +
Sbjct: 315 ETG-EIRVALWGDKADRE----IELADRVVFTDVEIQDGWQDDLEASA 357
>gi|448513831|ref|ZP_21616762.1| replication factor A [Halorubrum distributum JCM 9100]
gi|448526659|ref|ZP_21619928.1| replication factor A [Halorubrum distributum JCM 10118]
gi|445692984|gb|ELZ45147.1| replication factor A [Halorubrum distributum JCM 9100]
gi|445698886|gb|ELZ50924.1| replication factor A [Halorubrum distributum JCM 10118]
Length = 512
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 74/168 (44%), Gaps = 20/168 (11%)
Query: 163 GEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCT 222
G +RVT ++ D E E G+V + G ++ + E+ + TV+
Sbjct: 221 GRVRVTLWDGKAD-LAEEFEAGQVVEVGDGYVRERDGDL-------ELHVGDRGTVERVD 272
Query: 223 EEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKD 282
E+ + +P+ +++ E VDV G VI +P R +G E Q R + +KD
Sbjct: 273 EDVEYVPE-------TTDVADLEIGETVDVGGGVIETDPVRTFDRDDGSEGQVRNVRIKD 325
Query: 283 TSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKS 330
+G + + LWGD ++E E+ D F + ++ G +D +
Sbjct: 326 ETG-EIRVALWGDKADRE----IELADRVVFTDVEIQDGWQDDLEASA 368
>gi|76800811|ref|YP_325819.1| replication factor A [Natronomonas pharaonis DSM 2160]
gi|76556676|emb|CAI48248.1| replication protein A [Natronomonas pharaonis DSM 2160]
Length = 467
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 78/160 (48%), Gaps = 18/160 (11%)
Query: 140 LRRYNNARG-DGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQ 198
+R ++ G +G+V + L D + G+IRVT ++ DR E +E G+ I G ++ +
Sbjct: 187 VRTFDRDDGSEGRVSNLTLGD-ETGKIRVTLWDEQADR-AEALEAGQSVEIVDGYVRERE 244
Query: 199 KNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVIS 258
+ E+ + S +D E + +P ++I+S + VD+ G+V S
Sbjct: 245 GDL-------ELHAGSRSDIDELDESVEFVPDA-------TDIDSIAIDETVDIAGVVRS 290
Query: 259 VNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCN 298
+P R +G E Q R + L+D +G + + LWG+ +
Sbjct: 291 ADPKRTFDRDDGSEGQVRNVRLQDNTG-DIRVALWGEKAD 329
>gi|413923939|gb|AFW63871.1| hypothetical protein ZEAMMB73_151869 [Zea mays]
Length = 371
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 53/250 (21%), Positives = 94/250 (37%), Gaps = 30/250 (12%)
Query: 251 DVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWG---------DFCNKEG 301
DV+G++ +NP P L T R + +K+TS S+++TLWG D N+
Sbjct: 31 DVLGMLTQINP--PHLIGYNNSTIIRDIFIKNTSDMSLKITLWGNQASSFSISDVYNQSN 88
Query: 302 QKLQEMVDVGFFPVLSVKSGKVNDFSGKS-IGTIPSTQLFINPDFAEAHELREWFDSGG- 359
+ ++ VGF F G+ + + ++ + NP EA +
Sbjct: 89 NQPIVILLVGFL---------AKRFKGQPYLSSTTASSWYFNPGIPEAQTYYNRLQNNDL 139
Query: 360 KNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTA 419
+ + EI N KTV ++ N L + +++ + Y +
Sbjct: 140 QQIQPTAAEEEILLSQPPNLDQKTVEELLNIDLDMFPPEGYRCTVTISRIVQNSKWWYPS 199
Query: 420 CPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGE 479
C +C+K +Q+ + C C + ++RY L D T F
Sbjct: 200 C------SRCHKSSSQTSTGYHCTSCG--CTDINFRYKLNFIATDGTCEAEFFCFDSIAR 251
Query: 480 EILGCPAKEL 489
+I+G P L
Sbjct: 252 KIVGKPCDNL 261
>gi|348667623|gb|EGZ07448.1| hypothetical protein PHYSODRAFT_306620 [Phytophthora sojae]
Length = 356
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 77/183 (42%), Gaps = 52/183 (28%)
Query: 117 PIAALNPYQG-RWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVD 175
PI ++P G W + AR+ +R+++NA G G V + L+D++
Sbjct: 5 PIRDISPVLGVPWEVVARIAFLSPVRQWSNANGRGHVMNAKLVDAE-------------- 50
Query: 176 RFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSF 235
EI L S SL P E+DDSI ++F
Sbjct: 51 ---EI-------LASSASLTP-------------------------VEDDDSIEHVYYAF 75
Query: 236 RHISEIESAENNSIVDVIGIVISVNPSVPIL-RKNGMETQRRILNLKDTSGRSVELTLWG 294
I + A+ ++ D++ +++ V ++ RK+G++ +R L L D+S + TLW
Sbjct: 76 TTIRDFAHADVHAQADILPMIMDVGVLDSVVDRKDGVQVKRE-LKLTDSSNVEIVCTLWN 134
Query: 295 DFC 297
+F
Sbjct: 135 EFA 137
>gi|297596244|ref|NP_001042233.2| Os01g0184300 [Oryza sativa Japonica Group]
gi|255672951|dbj|BAF04147.2| Os01g0184300 [Oryza sativa Japonica Group]
Length = 168
Score = 47.0 bits (110), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 61/134 (45%), Gaps = 7/134 (5%)
Query: 130 IKARVTAKGDLRRYNNARGDGKVFSFDL--LDSDGGEIRVTCFNAVVDRFYEIIEVGRVY 187
IKARV+ D N+ D K+ DL LD G I + V+ +++ G+VY
Sbjct: 18 IKARVSRLWDFHDLND---DRKIVHTDLVLLDETGNSIHAQMYQHVIVNLKPLLQEGKVY 74
Query: 188 LISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENN 247
I +++ A + + + + I +T++ C + P FS ++ S +
Sbjct: 75 YIDSFTVRYANRTYRPVAHSLMILFTKWTTLEECVDVPADFPAITFSLTPFGDVPSLVDK 134
Query: 248 SI--VDVIGIVISV 259
+I VD++G++ +
Sbjct: 135 NIFYVDIMGVIAEI 148
>gi|414872930|tpg|DAA51487.1| TPA: hypothetical protein ZEAMMB73_025868 [Zea mays]
Length = 301
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 67/153 (43%), Gaps = 8/153 (5%)
Query: 154 SFDLLDSDGGEIR-VTCFNAVVDRFYEIIEVGRVYLIS--KGSLKPAQKNFNHLKNEWEI 210
F L D +G +I +T V F ++ VY + K +L P + NF HL E+
Sbjct: 83 HFVLSDINGAKIEAITYMYETVKHFDNLLHEKHVYKMHNVKFNLHPGEFNFRHLNGPMEL 142
Query: 211 FLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNG 270
L+ + V+ T P + ++++I N ++VD++ +V+ ++ +
Sbjct: 143 CLDQQTIVEPYTVPIQMAPFPKQILLNLADIAELPNRTLVDIMAVVVHLDTI-----QRT 197
Query: 271 METQRRILNLKDTSGRSVELTLWGDFCNKEGQK 303
M R + + D G + +WGD NK +
Sbjct: 198 MWGPFRKIVIMDARGYLHIIKVWGDLLNKNALR 230
>gi|414590353|tpg|DAA40924.1| TPA: hypothetical protein ZEAMMB73_767937 [Zea mays]
Length = 519
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 70/326 (21%), Positives = 130/326 (39%), Gaps = 48/326 (14%)
Query: 180 IIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHIS 239
+IE ++Y IS+ + A+ + + + I + + + + P +
Sbjct: 26 LIETNQIYDISRFRVTAAKTAYKPIDGDKMIQFTIYTIIKPGSNPPPTFPLYIYQLTPFD 85
Query: 240 EIESA--ENNSIVDVIGIVISVNPSVPILRKNGMETQR-----RILNLKDTSGRSVELTL 292
EIES +DV+G + V L+ +E Q R + ++D S +++++TL
Sbjct: 86 EIESQIQHKTKFLDVLGTITEVT----ALKTVHIEGQLSPTIIRDVMIEDLSRKTLKITL 141
Query: 293 WGDFCNKEGQKLQEMVD-VGFFPVLSVKSGKVNDF-SGKSIGTIPSTQLFINPDF--AEA 348
W +Q + D V P+L++ G + F G + + + NP AEA
Sbjct: 142 WAK--RATSFTIQNVYDPVSKKPILALFVGCLPKFYKGVYLSGGAACHWYFNPAIPEAEA 199
Query: 349 HELREWFDSGGKNAATVSISREIAAGGAKNEI------HKTVSQIKNEGLGRSEKPDW-- 400
++ R GG+ T+ + A HKT+ Q+ + + PD
Sbjct: 200 YQNRH----GGE---TIQLHLPTQPEHALQTFQPPTIEHKTLEQLLT--MNPYDYPDTGY 250
Query: 401 ---VTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYL 457
VTV T S+++ Y +C +C +K T + CD C + D ++Y
Sbjct: 251 ECTVTVTEIDT---SNTWWYPSC------TKCGRKTTPHNTTYYCDLC--KWDGYKFKYK 299
Query: 458 LQAQIQDQTGLTWVTAFQESGEEILG 483
L+ + D T + + F I+G
Sbjct: 300 LKFRASDATAIAQMFCFDNIARYIVG 325
>gi|413941935|gb|AFW74584.1| hypothetical protein ZEAMMB73_338699 [Zea mays]
Length = 537
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 78/179 (43%), Gaps = 15/179 (8%)
Query: 125 QGRWAIKARVTAKGDLR-RYNNARGDGKVFSFDLLDSDGGEIR-VTCFNAVVDRFYEIIE 182
Q +++I ARV K + RY + + + L D +G +I + +V F ++
Sbjct: 147 QRKYSIVARVEVKFPIEPRYRDRQ------HYILSDINGAKIEAIVTRYEIVKYFNSLLH 200
Query: 183 VGRVYLISKG--SLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISE 240
VY + L P NF HL E++ + V+ T P + F ++ +
Sbjct: 201 EKHVYKMHNVWFGLNPGAFNFRHLNGTMELYFTQQTVVEPYTVPVQMPPFPKHIFLNLDD 260
Query: 241 IESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNK 299
I N ++VD++ IV+ ++ + + T R+I+ + D + +WGD NK
Sbjct: 261 IAELPNRTLVDIMAIVVHLD----TIHRTMWGTFRKIV-IMDARWSLHTIKVWGDLLNK 314
>gi|413916849|gb|AFW56781.1| hypothetical protein ZEAMMB73_895477 [Zea mays]
Length = 259
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 81/181 (44%), Gaps = 15/181 (8%)
Query: 127 RWAIKARVTAKGDLR-RYNNARGDGKVFSFDLLDSDGGEIR-VTCFNAVVDRFYEIIEVG 184
+++I ARV K + R+ + + F L D +G +I +T V F ++
Sbjct: 19 KYSIVARVEVKFPIEPRFRDRQ------HFILSDINGAKIEAITYMYETVKHFDNLLHEK 72
Query: 185 RVYLIS--KGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIE 242
Y + K SL P + NF HL E+ L+ + V+ T P + ++++I
Sbjct: 73 HDYKMHNVKFSLHPGEFNFRHLNGPMELCLDQQTIVEPYTVPIQMAPFPKQILLNLADIA 132
Query: 243 SAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQ 302
N ++VD++ IV+ ++ + + R+I+ + D G + +WGD NK
Sbjct: 133 ELPNRTLVDIMAIVVHLD----TIHRTMWGPFRKIV-IMDARGYLHIIKVWGDLLNKNAL 187
Query: 303 K 303
+
Sbjct: 188 R 188
>gi|296089493|emb|CBI39312.3| unnamed protein product [Vitis vinifera]
Length = 156
Score = 46.6 bits (109), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Query: 218 VDLCTEEDDSIPKQQFSFRHISEIESAENNS-IVDVIGIVISVNPSVPILRKNGME-TQR 275
V+ + E+ IP+ +F F I E+ N +VDV G+V SV+P++ I RK+ E +
Sbjct: 71 VEEASNEETFIPEAKFKFVDIEELGPYVNGKELVDVSGVVQSVSPTMSIRRKSNNEIVPK 130
Query: 276 RILNLKDTSGRSVELTLWGDFCNKEG 301
R + + D + +SV ++LW D G
Sbjct: 131 RDITIADKTKKSVVVSLWNDHATNVG 156
>gi|413949080|gb|AFW81729.1| hypothetical protein ZEAMMB73_665548 [Zea mays]
Length = 259
Score = 46.6 bits (109), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 81/181 (44%), Gaps = 15/181 (8%)
Query: 127 RWAIKARVTAKGDLR-RYNNARGDGKVFSFDLLDSDGGEIR-VTCFNAVVDRFYEIIEVG 184
+++I ARV K + R+ + + F L D +G +I +T V F ++
Sbjct: 19 KYSIVARVEVKFPIEPRFRDRQ------HFILSDINGAKIEAITYMYETVKHFDNLLHEK 72
Query: 185 RVYLIS--KGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIE 242
Y + K SL P + NF HL E+ L+ + V+ T P + ++++I
Sbjct: 73 HDYKMHNVKFSLHPGEFNFRHLNGPMELCLDQQTIVEPYTVPIQMAPFPKQILLNLADIA 132
Query: 243 SAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQ 302
N ++VD++ IV+ ++ + + R+I+ + D G + +WGD NK
Sbjct: 133 ELPNRTLVDIMAIVVHLD----TIHRTMWGPFRKIV-IMDARGYLHIIKVWGDLLNKNAL 187
Query: 303 K 303
+
Sbjct: 188 R 188
>gi|312082357|ref|XP_003143411.1| hypothetical protein LOAG_07830 [Loa loa]
Length = 163
Score = 46.6 bits (109), Expect = 0.033, Method: Composition-based stats.
Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 11/115 (9%)
Query: 406 FITFIKSDSFCYTACPLMIGDRQCNKK--VTQSGNRWQCDRCNQEIDECDYRYLLQAQIQ 463
FI S + CP C KK V + + + C +C +E Y Y L ++
Sbjct: 3 FIEKYSSSYRTFQGCP------TCKKKLLVEKDNDLYICSKCGI-CNEYKYYYTLHMELF 55
Query: 464 DQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRL 518
D TG VTAF + ++++G A E+ K+ D R+ +S +F Y+FRL
Sbjct: 56 DFTGTVHVTAFDDCAQKLIGEQADEV--AKFLKFDSERYQSSFKSVLFKPYMFRL 108
>gi|413932471|gb|AFW67022.1| hypothetical protein ZEAMMB73_171734 [Zea mays]
Length = 270
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 8/145 (5%)
Query: 162 GGEIR-VTCFNAVVDRFYEIIEVGRVYLIS--KGSLKPAQKNFNHLKNEWEIFLEATSTV 218
G +I +T V F ++ +VY + K SL P + NF+HL E+ L+ + V
Sbjct: 60 GAKIEAITYMYETVKHFDNLLHEKQVYEMHNVKFSLHPGEFNFHHLNGPMELCLDQQTIV 119
Query: 219 DLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRIL 278
+ T P + ++++I N ++VD++ IV+ ++ + M R +
Sbjct: 120 EPYTVPIQMAPFPKQILLNLADIAELPNRTLVDIMAIVVHLDTI-----HHTMWGPFRKI 174
Query: 279 NLKDTSGRSVELTLWGDFCNKEGQK 303
+ D G + +WGD NK +
Sbjct: 175 VIMDARGYLHIIKVWGDLLNKNALR 199
>gi|413945118|gb|AFW77767.1| hypothetical protein ZEAMMB73_102861 [Zea mays]
Length = 249
Score = 46.6 bits (109), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 67/155 (43%), Gaps = 12/155 (7%)
Query: 154 SFDLLDSDGGEIR-VTCFNAVVDRFYEIIEVGRVYLIS--KGSLKPAQKNFNHLKNEWEI 210
F D +G +I +T V F ++ VY + K SL P + NF HL E+
Sbjct: 47 HFIFYDINGAKIEAITYMYETVKHFDNLLHEKHVYKMHNVKFSLHPGEFNFRHLNGPMEL 106
Query: 211 FLEATSTVD--LCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRK 268
L+ + V+ + + PKQ ++++I N ++VD++ IV+ ++
Sbjct: 107 CLDQQTIVEPYIVPIQMAPFPKQ--ILLNLADIAELPNRTLVDIMAIVVHLDTI-----H 159
Query: 269 NGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQK 303
M R + + D G + +WGD NK +
Sbjct: 160 RTMWGPFRKIVIMDARGYLHIIKVWGDLLNKNALR 194
>gi|67482964|ref|XP_656777.1| replication factor A [Entamoeba histolytica HM-1:IMSS]
gi|56473998|gb|EAL51392.1| replication factor A, putative [Entamoeba histolytica HM-1:IMSS]
gi|449707205|gb|EMD46905.1| replication factor A, putative [Entamoeba histolytica KU27]
Length = 569
Score = 46.6 bits (109), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 127 RWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRV 186
+ IK V K + + N +GK+FS L DS+G E +V+ FNA+VD+FY I +
Sbjct: 157 KCCIKGYVVHKSRINEFGNE--EGKIFSVILQDSEGSEFKVSFFNAMVDKFYSSIIEEQT 214
Query: 187 YLISKGSLKPAQKNFNHLKNEWEIFLEATST 217
+++K +K + +K LE T
Sbjct: 215 IVMNKIRIKKMNETSEKIKTRMMNNLEGIVT 245
>gi|413947628|gb|AFW80277.1| hypothetical protein ZEAMMB73_161157 [Zea mays]
Length = 286
Score = 46.6 bits (109), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 8/153 (5%)
Query: 154 SFDLLDSDGGEIR-VTCFNAVVDRFYEIIEVGRVYLIS--KGSLKPAQKNFNHLKNEWEI 210
F L D +G +I +T V F ++ VY + K SL P + NF +L E+
Sbjct: 68 HFVLSDINGAKIEAITYMYETVKHFDNLLHEKHVYKMHNVKFSLHPGEFNFRYLNGPMEL 127
Query: 211 FLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNG 270
L+ + V+ T P + ++++I N ++VD++ IV+ ++ + +
Sbjct: 128 CLDQQTIVEPYTVPIQMAPFPKQILLNLADIAELPNRTLVDIMAIVVHLD----TIHRTM 183
Query: 271 METQRRILNLKDTSGRSVELTLWGDFCNKEGQK 303
R+I+ + D G + +WGD NK +
Sbjct: 184 WGPFRKIV-IMDARGYLHIIKVWGDLLNKNALR 215
>gi|448532896|ref|ZP_21621316.1| replication factor A [Halorubrum hochstenium ATCC 700873]
gi|445706130|gb|ELZ58015.1| replication factor A [Halorubrum hochstenium ATCC 700873]
Length = 497
Score = 46.6 bits (109), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 16/138 (11%)
Query: 163 GEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCT 222
G +RVT ++ D E E G V + G ++ + E+ + TV+
Sbjct: 210 GRVRVTLWDGKAD-LAEEFEAGEVVEVGDGYVRERDGDL-------ELHVGDRGTVERVD 261
Query: 223 EEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKD 282
E+ + +P+ ++I E + VD+ G VI +P R +G E Q R + +KD
Sbjct: 262 EDVEYVPE-------TTDIADLEIDQTVDIAGGVIETDPKRTFDRDDGSEGQVRNVRIKD 314
Query: 283 TSGRSVELTLWGDFCNKE 300
+G + + LWGD +++
Sbjct: 315 ETG-EIRVALWGDKADRD 331
>gi|308080968|ref|NP_001183010.1| uncharacterized protein LOC100501330 [Zea mays]
gi|238008768|gb|ACR35419.1| unknown [Zea mays]
Length = 439
Score = 46.6 bits (109), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 58/284 (20%), Positives = 116/284 (40%), Gaps = 29/284 (10%)
Query: 220 LCTEEDDSI---PKQQFSFRHISEIESAENNS--IVDVIGIVISVNPSVPILRKNGMETQ 274
+ E+ D I PK FS + +++ +N + +DVI + V+ + +G +
Sbjct: 9 IVLEDKDQIQGFPKYTFSLTPLDKLDQYKNKTDRFIDVIAKISGVSNVAKVPTTSGDQQM 68
Query: 275 RRILNLKDTSGRSVELTLWG--------DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDF 326
RR++ L+D G +EL+L G D GQ+ ++ + ++ + G+
Sbjct: 69 RRVVLLEDLKGNMIELSLSGKRALEFDGDQVLDVGQQ-HHVIAIFVGTLVKLYKGEYTFL 127
Query: 327 SGKSIGTIPSTQLFINP-DFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVS 385
SG S + + +IN D AE ++ S + + A + K++
Sbjct: 128 SGTS-----ACRWYINENDIAEIKAFQKSLPSEPVPIKKTYLQNDDATHKFE---EKSLE 179
Query: 386 QIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRC 445
Q+K+ + I ++ ++CY AC + CN + Q N ++C +
Sbjct: 180 QLKHVDPFLDMGQRYQCTATIIGITENQTWCYKACKI------CNSAIIQKENGYKCTKE 233
Query: 446 NQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKEL 489
+ +++Y + D T F++ G E++G A L
Sbjct: 234 GCPSTQFEWKYKIPFIASDHTYNLEFMFFEKKGMELIGKSASTL 277
>gi|326525481|dbj|BAJ88787.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 118
Score = 46.6 bits (109), Expect = 0.039, Method: Composition-based stats.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 7/100 (7%)
Query: 382 KTVSQIKNEGLGRSEKPDWVTVRAFITFI-KSDSFCYTACPLMIGDRQCNKKVTQSGNRW 440
+T+ +I ++ + T A I I SD + Y C R+CNKKV + GN +
Sbjct: 24 RTLKEITEITYESEKQEKFYTTEAMIKSIDTSDEWYYIGC------RKCNKKVQKQGNHF 77
Query: 441 QCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEE 480
C +C +E + RY L+ +I D + T T F+ ++
Sbjct: 78 YCPKCEKEPENTCPRYKLKLEICDLSATTTCTMFEAEAKK 117
>gi|448407833|ref|ZP_21574028.1| replication factor A [Halosimplex carlsbadense 2-9-1]
gi|445675083|gb|ELZ27618.1| replication factor A [Halosimplex carlsbadense 2-9-1]
Length = 493
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 80/184 (43%), Gaps = 18/184 (9%)
Query: 118 IAALNPYQGRWAIKARVTAKGDLRRYNNARG-DGKVFSFDLLDSDGGEIRVTCFNAVVDR 176
+ AL Q ++ V +R ++ G +GKV + LL + G +RVT ++ DR
Sbjct: 165 VDALTMGQSDVNVRGIVLETDSIRTFDRDDGSEGKVSNL-LLGDETGRVRVTMWDDRADR 223
Query: 177 FYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFR 236
E+ + G I G ++ + + + E TV+ E D
Sbjct: 224 ATEL-DPGTAVEIVDGYVREREGDLELHVGDHGAIDEIDETVEFTPEAD----------- 271
Query: 237 HISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDF 296
I + E + +VD+ G+V S +P R +G E Q R + ++D + + + LWG+
Sbjct: 272 ---AIGAVEMDQVVDLAGVVRSADPKRTFDRDDGSEGQVRNIRVQDDT-DDIRVALWGEK 327
Query: 297 CNKE 300
+KE
Sbjct: 328 ADKE 331
>gi|218199233|gb|EEC81660.1| hypothetical protein OsI_25208 [Oryza sativa Indica Group]
Length = 376
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 76/172 (44%), Gaps = 9/172 (5%)
Query: 118 IAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRF 177
++ +N + W IK RV L + R D L++ +G I + +F
Sbjct: 6 LSQINSTRHNWRIKVRVARSWHLSGTSKGR-DFTALELILVNEEGVGITACVGENEIQKF 64
Query: 178 YEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVD-LCTEEDDSIPKQQFSFR 236
I G Y + + K N + + + IF + V+ + TE S+P F+F
Sbjct: 65 STSIVEGHAYFLRNFRVSRQTKKLNAVPSTYVIFFTPWTIVEEIPTEISGSLPLYIFNFV 124
Query: 237 HISEIE--SAENNSIVDVIGIVISVNPSVPILRKNGME--TQRRILNLKDTS 284
+++ + N +VDVIG + V+ P+++ NG+ + RR + L+D S
Sbjct: 125 DFEDLDERARHPNGLVDVIGQLTVVH---PLVQSNGLNGPSVRRNVELRDLS 173
>gi|222445635|ref|ZP_03608150.1| hypothetical protein METSMIALI_01275 [Methanobrevibacter smithii
DSM 2375]
gi|222435200|gb|EEE42365.1| nucleic acid-binding domain protein [Methanobrevibacter smithii DSM
2375]
Length = 793
Score = 46.2 bits (108), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 59/271 (21%), Positives = 111/271 (40%), Gaps = 52/271 (19%)
Query: 227 SIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGR 286
+I +S + I+++E E++ + V G +I + R +G + + L + D SG
Sbjct: 521 TIETMLYSHKSIADVE--EDDEGIIVTGRIIESSDVREFDRTDGSKGYVKSLEIADNSG- 577
Query: 287 SVELTLWGDFCNKE-----GQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFI 341
S+ +TLW + KE K Q+ P +S ++ + I ST + +
Sbjct: 578 SINVTLWNENAKKEWNVGDAIKFQD-------PQISFRNDSL------EINVSRSTSI-L 623
Query: 342 NPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWV 401
PD +E +L + + SI + KT+ ++++ V
Sbjct: 624 EPDESEIDDLPTY------DELKESIY-----------VPKTIEALEDDDRN-------V 659
Query: 402 TVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQ 461
+ + + + T CP C V QS + + C C + IDE Y ++ A+
Sbjct: 660 RITGTLKEVFGNKILITKCP------SCGNTVDQSSDDFVCSFCGEPIDEPRYLLMVPAR 713
Query: 462 IQDQTGLTWVTAFQESGEEILGCPAKELYML 492
++D TG +T F EE+L +++ L
Sbjct: 714 LEDDTGEISITFFDNLAEELLDMKKEDIINL 744
>gi|77556294|gb|ABA99090.1| hypothetical protein LOC_Os12g32690 [Oryza sativa Japonica Group]
Length = 1312
Score = 46.2 bits (108), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 66/152 (43%), Gaps = 8/152 (5%)
Query: 99 NFRNHGPILKNEAPARIIP-------IAALNPYQGRWAIKARVTAKGDLRRYNNARGDGK 151
NF +H +LK + I+ IA+L G ++ R++ + N+
Sbjct: 589 NFPSHKLVLKKDCQDGIVKAKMGELQIASLELSDGNPTLRIRISRLWEYHDQNDETNLHH 648
Query: 152 VFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIF 211
+ L+D G I + +F +I G+VYL++ +KP K++ + N+ I
Sbjct: 649 I-GLVLVDQKGSSIAAMIYPPCDKKFKPLITEGKVYLLTYYRVKPCTKHYWPVDNKLAIT 707
Query: 212 LEATSTVDLCTEEDDSIPKQQFSFRHISEIES 243
STV+ C + D+ + +S +E+ S
Sbjct: 708 FTWWSTVEECVDVPDNFAQYAYSLTPFNELRS 739
>gi|448664770|ref|ZP_21684408.1| replication factor A [Haloarcula amylolytica JCM 13557]
gi|445774357|gb|EMA25378.1| replication factor A [Haloarcula amylolytica JCM 13557]
Length = 488
Score = 45.8 bits (107), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 84/191 (43%), Gaps = 20/191 (10%)
Query: 112 PARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARG-DGKVFSFDLLDSDGGEIRVTCF 170
P I AL Q ++ V +R ++ G +G+V + L D G IRVT +
Sbjct: 159 PGAGSSIDALTMGQSDVTLRGLVLDTDTIRTFDRDDGSEGRVSNLTLGDE-TGRIRVTLW 217
Query: 171 NAVVDRFYEIIEVGRVYLISKGSLKPAQKNFN-HLKNEWEIFLEATSTVDLCTEEDDSIP 229
+ DR E+ + G I G ++ + H+ ++ + D E D+ P
Sbjct: 218 DDRADRAEEL-DAGAAVEIIDGYVRERDGSLELHVGDQGAV----DEVEDDVAFEPDADP 272
Query: 230 KQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVE 289
I+E+E E VD+ G+V S +P R +G E Q R + ++D +G +
Sbjct: 273 --------IAEVELEET---VDIAGVVRSADPKRTFDRDDGSEGQVRNVRIQDATG-DIR 320
Query: 290 LTLWGDFCNKE 300
+ LWGD +K+
Sbjct: 321 VALWGDKADKD 331
>gi|413948878|gb|AFW81527.1| hypothetical protein ZEAMMB73_249157 [Zea mays]
Length = 575
Score = 45.8 bits (107), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 78/391 (19%), Positives = 150/391 (38%), Gaps = 53/391 (13%)
Query: 121 LNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSD--GGEIRVTCFNAVVDRFY 178
L Y+ I+ V+ K ++ A +G + D++ SD G + + +
Sbjct: 15 LTTYKKHAIIQVHVSRKWS---FHGATENGPLQHIDMVLSDCKGNSMYAEIPANLAEEKG 71
Query: 179 EIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHI 238
+IE ++Y IS+ + A+ + + + I + + + + +
Sbjct: 72 ALIETNQIYDISRFRVTAAKTAYKPIDGDKMIQFTIYTIIKPASNPPPTFSLYIYQLTPF 131
Query: 239 SEIESA--ENNSIVDVIGIVISVNPSVPILRKNGMETQR-----RILNLKDTSGRSVELT 291
EIES +DV+G + V L+ +E Q R + ++D S +++++T
Sbjct: 132 DEIESQIQHKTKFLDVLGTITEVT----ALKTVHIEGQLSPTIIRDIMIEDLSRKTLKIT 187
Query: 292 LWGDFCNKEGQKLQEMVD-VGFFPVLSVKSGKVNDF-SGKSIGTIPSTQLFINPDFAEAH 349
LW +Q + D V P+L++ G + F G + + + NP EA
Sbjct: 188 LWAK--RATSFTIQNVYDPVSKKPILALFVGCLPKFYKGVYLSGGAACHWYFNPAIPEAE 245
Query: 350 ELRE------WFDSGGKNAATVSISREIAAGGAKNEI------HKTVSQIKNEGLGRSEK 397
+ + GG+ T+ + A HKT+ Q+ + +
Sbjct: 246 AYQNSITKYYAYKHGGE---TIQLHLPTQPEHALQTFQPPTIEHKTLEQLLT--MNPYDY 300
Query: 398 PDW-----VTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDEC 452
PD VTV T S+++ Y +C +C +K T + CD C + D
Sbjct: 301 PDTGYECTVTVTEIDT---SNTWWYPSC------TKCGRKTTPHNTTYYCDLC--KWDGY 349
Query: 453 DYRYLLQAQIQDQTGLTWVTAFQESGEEILG 483
++Y L+ + D T + + F I+G
Sbjct: 350 KFKYKLKFRASDATAIAQMFCFDNIARYIVG 380
>gi|77550798|gb|ABA93595.1| hypothetical protein LOC_Os11g28660 [Oryza sativa Japonica Group]
Length = 786
Score = 45.8 bits (107), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 94/227 (41%), Gaps = 36/227 (15%)
Query: 250 VDVIGIVISVN-PSVPILRKNGMETQRRILNLKDTSGRSVELTLWGD---------FCNK 299
VDV+G++ V P++ + ++ +R + + D S ++ +TLWGD N
Sbjct: 341 VDVMGVITEVGAPAIVRPKSRNTDSLKRTIQICDASNSTLPVTLWGDKAAIFDADTIYNA 400
Query: 300 EGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSI---GTIPSTQLFINPDFAEAHELREWFD 356
+ Q +V VG V D+ G + G+ P Q ++N D E EL+E F
Sbjct: 401 GQTQPQVIVFVGML---------VKDYPGLGLIVTGSSPC-QWYLNLDIPEVLELKESFS 450
Query: 357 SGGKNAATVSISREIAAGGAKNEI--HKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDS 414
+ + A V + A G +I K + +I ++ ++ +S
Sbjct: 451 ANFRAIAWV----DNPATGYNQDIAEEKKILEILALNPHKNRSTRFIVTVTVKKICTENS 506
Query: 415 FCYTACPLMIGDRQCNKKVTQSGNRWQCDRC-NQEIDECDYRYLLQA 460
+ Y +C R C + G+ ++C C N I + Y+ +L A
Sbjct: 507 WWYNSC------RMCYRTSRPYGSTYKCSGCSNIGIPDPRYKVVLIA 547
>gi|414888156|tpg|DAA64170.1| TPA: hypothetical protein ZEAMMB73_601434 [Zea mays]
Length = 265
Score = 45.8 bits (107), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 62/137 (45%), Gaps = 8/137 (5%)
Query: 127 RWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIR-VTCFNAVVDRFYEIIEVGR 185
+++I ARV K + + R F L D +G +I +T + V F ++
Sbjct: 73 KYSIVARVEVKFPIEPHYRDRQH-----FILSDINGAKIEAITYVSVTVKHFNNLLHEKH 127
Query: 186 VYLIS--KGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIES 243
VY + K L P + NF HL E++ + V+ T P + F ++ +I
Sbjct: 128 VYNMHNVKFGLHPGEFNFRHLNGPMELYFNQQTIVEPYTVPIQMPPFPKHIFFNLDDIAE 187
Query: 244 AENNSIVDVIGIVISVN 260
N ++VD++ IV+ ++
Sbjct: 188 LPNRTLVDIMAIVVHMD 204
>gi|448434386|ref|ZP_21586196.1| replication factor A [Halorubrum tebenquichense DSM 14210]
gi|445685302|gb|ELZ37657.1| replication factor A [Halorubrum tebenquichense DSM 14210]
Length = 493
Score = 45.8 bits (107), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 16/138 (11%)
Query: 163 GEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCT 222
G +RVT ++ D E E G V + G ++ + E+ + TV+
Sbjct: 210 GRVRVTLWDGKADLAAEF-EAGEVVEVGDGYVRERDGDL-------ELHVGDRGTVERVD 261
Query: 223 EEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKD 282
E+ + +P+ ++I E + VD+ G VI +P R +G E Q R + +KD
Sbjct: 262 EDVEYVPE-------TTDIADLEIDQTVDIAGGVIETDPKRTFDRDDGSEGQVRNVRIKD 314
Query: 283 TSGRSVELTLWGDFCNKE 300
+G + + LWGD +++
Sbjct: 315 ETG-EIRVALWGDKADRD 331
>gi|242047974|ref|XP_002461733.1| hypothetical protein SORBIDRAFT_02g007190 [Sorghum bicolor]
gi|241925110|gb|EER98254.1| hypothetical protein SORBIDRAFT_02g007190 [Sorghum bicolor]
Length = 735
Score = 45.8 bits (107), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 72/385 (18%), Positives = 151/385 (39%), Gaps = 45/385 (11%)
Query: 117 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDL--LDSDGGEIRVTCFNAVV 174
P++ L P + I RV+ + Y + FD+ +D G + V+
Sbjct: 240 PLSELRPMNTMYNIHVRVSRTWE---YRGKSEKNPLIHFDMVVIDQKGYAMYCEVSPEVL 296
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
+ +E G+V I K ++ A+ + + + + L + + D S PK
Sbjct: 297 PHMKQYLEEGKVLYIWKACVERAKPGYRVVDAPYMLKLIMRTEIFEGNSNDTSFPKYH-- 354
Query: 235 FRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWG 294
+++S N VDVIG + +++ + +G RR++ L+D G +++L+L
Sbjct: 355 -----DLQSFLN---VDVIGKITAISNAAVARNTSGDLMMRRLITLQDHKGNTIDLSL-- 404
Query: 295 DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFI-NPDFAEAHELRE 353
GQ+ E F + G+ + +GT+ +++ + F
Sbjct: 405 -----SGQRALEFDAEAVFDI-----GQNHHVIAIFVGTL--MKIYREDYKFLSGTSACR 452
Query: 354 WFDSGGKNAATVSISREIAAGGAKNEIHKTVSQ------IKNEGLGRSEKPDWVTVRAFI 407
W+ + A + R + + + S+ ++ + L + D +T + +
Sbjct: 453 WYINENDIPAMRTFQRGLPYQVTPIQKLQLQSEDYMEQGVEEKTLFDLKHIDPLTDKCTV 512
Query: 408 TFI---KSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQD 464
T I + + +CY AC + CN + + + C + + D++Y + D
Sbjct: 513 TLISLAEKEQWCYRACKV------CNSTLILGNDGYDCTKDGCSCKQYDWKYKVCFIAAD 566
Query: 465 QTGLTWVTAFQESGEEILGCPAKEL 489
T F++ G E++G A+ L
Sbjct: 567 DTYSLQFMFFEKKGVELIGKSAETL 591
>gi|448730441|ref|ZP_21712749.1| replication factor A [Halococcus saccharolyticus DSM 5350]
gi|445793609|gb|EMA44181.1| replication factor A [Halococcus saccharolyticus DSM 5350]
Length = 493
Score = 45.8 bits (107), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 86/191 (45%), Gaps = 20/191 (10%)
Query: 111 APARIIPIAALNPYQGRWAIKARVTAKGDLRRY--NNARGDGKVFSFDLLDSDGGEIRVT 168
A + +A + P A+VT+ G+LR + + DG+V + ++ D + G+IRV
Sbjct: 49 ADGEVEGVADVEPGMEEAKFVAKVTSVGELRTFERDGEDEDGQVINVEVAD-ETGQIRVA 107
Query: 169 CFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSI 228
++ + E +E G V I+ +P ++ +N ++ + A VD+ + D+I
Sbjct: 108 FWDERAESAAEELETGSVLKIAG---RP-REGYNGIEISADRVEPADVEVDVDLDAADTI 163
Query: 229 PKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSV 288
S VD++G+V+ + R +G E + L L D +GR+
Sbjct: 164 AGLSL------------GQSDVDLVGLVLDTDTVRTFDRDDGSEGRVANLTLGDETGRT- 210
Query: 289 ELTLWGDFCNK 299
+TLW D +
Sbjct: 211 RVTLWDDQAGR 221
>gi|448466840|ref|ZP_21599262.1| replication factor A [Halorubrum kocurii JCM 14978]
gi|445813266|gb|EMA63246.1| replication factor A [Halorubrum kocurii JCM 14978]
Length = 495
Score = 45.8 bits (107), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 74/164 (45%), Gaps = 20/164 (12%)
Query: 163 GEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCT 222
G +RVT ++ D E E G V + G ++ + E+ + TV+
Sbjct: 210 GRVRVTLWDGKADLADEF-EAGEVVEVGDGYVRERDGDL-------ELHVGDRGTVERVD 261
Query: 223 EEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKD 282
E+ + +P+ ++++E E VD+ G VI +P R +G E Q R + +KD
Sbjct: 262 EDVEYVPETT----DVADLEIGET---VDIGGGVIETDPKRTFDRDDGSEGQVRNVRIKD 314
Query: 283 TSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDF 326
+G + + LWGD ++E E+ D F + ++ G +D
Sbjct: 315 DTGE-IRVALWGDKADRE----IELADRVVFTDVEIQDGWQDDL 353
>gi|296089491|emb|CBI39310.3| unnamed protein product [Vitis vinifera]
Length = 232
Score = 45.4 bits (106), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 224 EDDSIPKQQFSFRHISEIESAENNS-IVDVIGIVISVNPSVPILRKNGME-TQRRILNLK 281
E+ IP+ +F F I E+ N +VDV G+V SV+P++ I RK+ E +R + +
Sbjct: 153 EETFIPEAKFKFVDIEELGPYVNGKELVDVSGVVQSVSPTMSIRRKSNNEIVPKRDITIA 212
Query: 282 DTSGRSVELTLWGDFCNKEG 301
D + +SV ++LW D G
Sbjct: 213 DKTKKSVVVSLWNDHATNVG 232
>gi|413950138|gb|AFW82787.1| hypothetical protein ZEAMMB73_165169 [Zea mays]
Length = 229
Score = 45.4 bits (106), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 63/139 (45%), Gaps = 7/139 (5%)
Query: 167 VTCFNAVVDRFYEIIEVGRVYLIS--KGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEE 224
+T V F ++ VY + K SL P + NF+HL E+ L+ + V+ T
Sbjct: 38 ITYMYETVKHFDNLLHEKHVYKMHNVKFSLHPGEFNFHHLNGPMELCLDQQTIVEPYTVP 97
Query: 225 DDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTS 284
P + ++++I N ++VD++ IV+ ++ + + R+I+ + D
Sbjct: 98 IQMAPFPKQILLNLADIAELPNRTLVDIMAIVVHLD----TIHRTMWGPFRKIV-IMDAR 152
Query: 285 GRSVELTLWGDFCNKEGQK 303
G + +WGD NK +
Sbjct: 153 GYLHIIKVWGDLQNKNALR 171
>gi|296083354|emb|CBI22990.3| unnamed protein product [Vitis vinifera]
Length = 69
Score = 45.4 bits (106), Expect = 0.075, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 286 RSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPD 344
++V ++LW D GQ+L + D FP++++KS KV DF S+ T+ + + +NPD
Sbjct: 10 KTVVVSLWNDHATNVGQELLDNADK--FPIVAIKSLKVGDFQVVSLSTLSESIVLVNPD 66
>gi|413944680|gb|AFW77329.1| hypothetical protein ZEAMMB73_618034 [Zea mays]
Length = 335
Score = 45.4 bits (106), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 71/155 (45%), Gaps = 12/155 (7%)
Query: 154 SFDLLDSDGGEIR-VTCFNAVVDRFYEIIEVGRVYLIS--KGSLKPAQKNFNHLKNEWEI 210
F L D +G +I +T V F ++ VY + K +L P + NF HL E+
Sbjct: 117 HFVLSDINGAKIEAITYMYETVKHFDNLLHEKHVYKMHNVKFNLHPGEFNFRHLNGPMEL 176
Query: 211 FLEATSTVD--LCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRK 268
L+ + V+ + + PKQ ++++I N ++VD++ +V+ ++ + +
Sbjct: 177 CLDQQAIVEPYIVPIQMAPFPKQ--ILLNLADIAELPNRTLVDIMAVVVHLD----TIHR 230
Query: 269 NGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQK 303
R+I+ + D G + +WGD NK +
Sbjct: 231 TMWGPFRKIV-IMDARGHLHIIKVWGDLLNKNALR 264
>gi|224108251|ref|XP_002333414.1| predicted protein [Populus trichocarpa]
gi|222836505|gb|EEE74912.1| predicted protein [Populus trichocarpa]
Length = 756
Score = 45.4 bits (106), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 56/305 (18%), Positives = 120/305 (39%), Gaps = 30/305 (9%)
Query: 228 IPKQQFSFRHISEIESAENNS--IVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSG 285
+P+ F+F + I + S + DV+G + ++ P ++ +R L++ G
Sbjct: 336 VPRYYFNFIDYAHILTKSKGSRILTDVLGRLKALQPLEQVMVCGQTLENKREFMLENIRG 395
Query: 286 RSVELTLWGDFCNKEGQKLQEMVDVGF-FPVLSVKSG-KVNDFSGK-SIGTIPSTQLFIN 342
+ +TLWGD + E+ PV+ +G +V +F GK ++ + ++ + N
Sbjct: 396 EELHITLWGD----SARDFDELALHNLPSPVIIAFAGFRVTEFKGKPNLNSTTTSLWYFN 451
Query: 343 PDFAEAHELREWFDS--------GGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGR 394
PD E + +F + +SI +I E +T+ +I
Sbjct: 452 PDIPECLAYKHFFAQLPVEIQQLPSSSNVVLSIEEQI------KENRRTIHEILCMNPYE 505
Query: 395 SEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDY 454
+ + + + F + + Y +CP +CNKK++ + C +
Sbjct: 506 HKHLRFTYQASIVDFDFPNGWWYPSCP------KCNKKLSGGEKNYTCMDHDAITSLPVP 559
Query: 455 RYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQY 514
+ L+ + D +T F ++ E G A Y+ + D + +++
Sbjct: 560 WFRLECIVTDGEDVTNFFLFGKTAENFFGSSAHH-YVYDKKFIDPSVLPPAMAAKLNKSM 618
Query: 515 LFRLK 519
+F+L+
Sbjct: 619 IFQLR 623
>gi|328725637|ref|XP_003248557.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Acyrthosiphon pisum]
Length = 248
Score = 45.1 bits (105), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 78/182 (42%), Gaps = 35/182 (19%)
Query: 186 VYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAE 245
VY I G +K A K +N KN +EIF +T+ + D IP Q + I + S +
Sbjct: 8 VYNIKNGEVKEADKAYNKSKNNYEIFFNGLTTI-IERSGDTDIPNHQ-QLKTIDNLFSMD 65
Query: 246 NNSIVDVIGIVISVNPSVPILRKNGMETQRRI-------LNLKDTSGRSVELTLWG---- 294
N++ + + IL + + +RI +K V +TLW
Sbjct: 66 QNTL---------IGNNSDILLSSLIYNYKRIYLSYKIHYYIKIAFFLKVTVTLWDTEAT 116
Query: 295 DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSG-KSIGTIPSTQLFINPDFAEAHELRE 353
+F EG ++S+ GK+ D+ K I S+++ INP++ E +L+
Sbjct: 117 NFNANEG------------DIMSIMEGKIIDYKNVKKISMTGSSKIEINPNWNETLDLQN 164
Query: 354 WF 355
W+
Sbjct: 165 WY 166
>gi|448444635|ref|ZP_21589925.1| replication factor A [Halorubrum saccharovorum DSM 1137]
gi|445686048|gb|ELZ38389.1| replication factor A [Halorubrum saccharovorum DSM 1137]
Length = 496
Score = 45.1 bits (105), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 66/143 (46%), Gaps = 26/143 (18%)
Query: 163 GEIRVTCFN---AVVDRFY--EIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATST 217
G +RVT ++ + D F E++EVG Y+ + + E+ + T
Sbjct: 210 GRVRVTLWDDKAGLADEFGPGEVVEVGDGYVRER-------------DGDLELHVGDRGT 256
Query: 218 VDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRI 277
V+ E+ + +P+ +++ E +VD+ G VI +P R +G E Q R
Sbjct: 257 VERVDEDVEYVPE-------TTDVADVEIGEVVDIGGGVIETDPKRTFDRDDGSEGQVRN 309
Query: 278 LNLKDTSGRSVELTLWGDFCNKE 300
+ +KD +G + + LWGD ++E
Sbjct: 310 VRIKDDTG-EIRVALWGDKADRE 331
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 84/181 (46%), Gaps = 20/181 (11%)
Query: 118 IAALNPYQGRWAIKARVTAKGDLR---RYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
IA + P +VT+ GD+R R ++ +G+V + D+ D+ G +RV ++ +
Sbjct: 56 IADIEPGMNDVKFLGKVTSIGDVRTFERDDDEAEEGRVCNVDVADA-SGSVRVALWDEMA 114
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
E +EVG+V + + ++ ++ L+ S + +ED + Q
Sbjct: 115 AAAEEQLEVGQVLRV----MGRPKEGYSGLE---------VSADKVEPDEDAEVDVQVLD 161
Query: 235 FRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWG 294
++++ ++ VD++G V+ + R +G E + L + D +GR V +TLW
Sbjct: 162 TYQVADLSLGASD--VDLVGQVLDTDSVRTFDRDDGSEGRVANLTVGDETGR-VRVTLWD 218
Query: 295 D 295
D
Sbjct: 219 D 219
>gi|407039454|gb|EKE39659.1| replication factor A, putative [Entamoeba nuttalli P19]
Length = 569
Score = 45.1 bits (105), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 127 RWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRV 186
+ IK V K + + N +GK+FS L D++G E +V+ FNA+VD+FY I +
Sbjct: 157 KCCIKGYVVHKSRINEFGNE--EGKIFSVILQDNEGSEFKVSFFNAMVDKFYSSIIEEQT 214
Query: 187 YLISKGSLKPAQKNFNHLKNEWEIFLEATST 217
+++K +K + +K LE T
Sbjct: 215 IVMNKIRIKKMNETSEKIKTRMMNNLEGIVT 245
>gi|414865329|tpg|DAA43886.1| TPA: hypothetical protein ZEAMMB73_055176 [Zea mays]
Length = 566
Score = 45.1 bits (105), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 78/179 (43%), Gaps = 15/179 (8%)
Query: 125 QGRWAIKARVTAKGDLR-RYNNARGDGKVFSFDLLDSDGGEIR-VTCFNAVVDRFYEIIE 182
Q +++I ARV K + RY + + + L D +G +I + +V F ++
Sbjct: 38 QRKYSIVARVEVKFPIEPRYRDRQ------HYILSDINGAKIEAIATRYEIVKNFNSLLH 91
Query: 183 VGRVYLISKG--SLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISE 240
VY + L P NF HL E++ + V+ T P + F ++ +
Sbjct: 92 EKHVYKMHNVWFGLNPGAFNFRHLNGTMELYFTHQTVVEPYTVPVQMPPFPKHIFLNLDD 151
Query: 241 IESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNK 299
I N ++VD++ IV+ ++ + + T R+I+ + D + +WGD NK
Sbjct: 152 IAELPNRTLVDIMAIVVHLD----TIHRTMWGTFRKIV-IMDARWSLHTIKVWGDLLNK 205
>gi|390341544|ref|XP_003725476.1| PREDICTED: uncharacterized protein C16orf73 homolog
[Strongylocentrotus purpuratus]
Length = 834
Score = 45.1 bits (105), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 58/262 (22%), Positives = 112/262 (42%), Gaps = 22/262 (8%)
Query: 250 VDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVD 309
++++ +V V I+ K G ET+R ++ D + S + +W + Q+ Q
Sbjct: 534 INLLTLVKKVGTPKDIVTKGGRETKRCEVSFFDETCSSFSMVIWDEEVIDLVQQWQAKET 593
Query: 310 VGFFPVLSVKSGKVNDFSGKSIGTIPSTQLF-INPDFAEAHELREWFDSGGKNAATVSIS 368
V F V V K +DF + ++ S +F INPD EAH L ++ S + + +
Sbjct: 594 V-IFAVDVV--AKYDDFRNTMVASVDSKSIFIINPDTREAHSLYKFGQSSTADEESAEET 650
Query: 369 REIAAGGAKNEIHKTVSQIKNEGLGRSE---KPDWVTVRAFITFIKSDSFCYTACPLMIG 425
++ A ++++ V ++K + + + D+ V AF++ D T+ L +
Sbjct: 651 KDSVDLQAIHDVY-MVDELKAKMCDKQSMMMQSDYGIVYAFLSAYDLDG--PTSAVLSMR 707
Query: 426 DRQCNKKVTQSGNRWQCDRCNQEI---DECDYRYLLQAQIQDQTGL---TWVTAF----- 474
C+K+V + C+ I + Y L+ + D +G +V +
Sbjct: 708 CTSCHKRVDKETGTCLNSNCSAAITDQSQAILNYDLRVNLSDLSGTINGVYVGGYVAEQI 767
Query: 475 -QESGEEILGCPAKELYMLKYE 495
+S EE C EL +K++
Sbjct: 768 IGKSAEEFSKCSEDELTGMKWQ 789
>gi|414878547|tpg|DAA55678.1| TPA: hypothetical protein ZEAMMB73_083768 [Zea mays]
Length = 409
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 8/152 (5%)
Query: 155 FDLLDSDGGEIR-VTCFNAVVDRFYEIIEVGRVYLIS--KGSLKPAQKNFNHLKNEWEIF 211
F D +G +I +T V F ++ VY + K SL + NF HL E+
Sbjct: 192 FIFYDINGAKIEAITYMYETVKYFDNLLHEKHVYKMHNVKFSLHSGEFNFRHLNGPMELC 251
Query: 212 LEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGM 271
L+ + V+ T P + ++++I N ++VD++ IV+ ++ + +
Sbjct: 252 LDQQTIVEPYTVPIQMAPFPKQILLNLADIAELPNRTLVDIMAIVVHLD----TIHRTMW 307
Query: 272 ETQRRILNLKDTSGRSVELTLWGDFCNKEGQK 303
R+I+ + D G + +WGD NK +
Sbjct: 308 GPFRKIV-IMDARGYLHIIKVWGDLLNKNALR 338
>gi|402223355|gb|EJU03420.1| hypothetical protein DACRYDRAFT_106580, partial [Dacryopinax sp.
DJM-731 SS1]
Length = 344
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 35/160 (21%)
Query: 232 QFSFRH--ISEIESAENNSIVDVIGIVISVNPSV--PILRKNG------------METQR 275
QF H +S + + E+ S V+++G+++ V V PI ++ + +
Sbjct: 155 QFLTDHPSLSFLAALEDKSKVNILGVILQVGKLVTKPIAMRSASVALDGSTQQASTKQKS 214
Query: 276 RIL---NLKDTSGRSVELTLWGD----FCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSG 328
R+L + D G V +T+W F K GQ VL V + V G
Sbjct: 215 RMLCEVQVVDKEGHVVRVTMWNSRAKIFSGKHGQ------------VLHVMNSVVEHRGG 262
Query: 329 KSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSIS 368
++ + T+ +NP EA EL++WF G AA IS
Sbjct: 263 VTLNSSEKTEFPLNPKIEEADELKQWFTDGFDEAALKHIS 302
>gi|297829130|ref|XP_002882447.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297328287|gb|EFH58706.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 331
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 441 QCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKEL 489
+C++CN E+ + RY L + D TG T + F E+I+G PA EL
Sbjct: 157 RCEKCNAEVSAVEARYWLHLDVMDNTGETKLMLFDSFVEKIIGTPAYEL 205
>gi|297840899|ref|XP_002888331.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297334172|gb|EFH64590.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 331
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 441 QCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKEL 489
+C++CN E+ + RY L + D TG T + F E+I+G PA EL
Sbjct: 157 RCEKCNAEVSAVEARYWLHLDVMDNTGETKLMLFDSFVEKIIGTPAYEL 205
>gi|167390102|ref|XP_001739210.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165897187|gb|EDR24424.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 567
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 127 RWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRV 186
+ IK V K + + N +GK+FS L D++G E +V+ FNA+VD+FY I +
Sbjct: 155 KCCIKGYVVHKSRINEFGNE--EGKIFSVILQDNEGSEFKVSFFNAMVDKFYSSIIEEQT 212
Query: 187 YLISKGSLKPAQKNFNHLKNEWEIFLEATST 217
++ K +K + +K LE T
Sbjct: 213 IVMDKIRIKKMNETSEKIKTRMMNNLEGIVT 243
>gi|357440733|ref|XP_003590644.1| hypothetical protein MTR_1g072220 [Medicago truncatula]
gi|355479692|gb|AES60895.1| hypothetical protein MTR_1g072220 [Medicago truncatula]
Length = 231
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 84/201 (41%), Gaps = 34/201 (16%)
Query: 157 LLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATS 216
L+D G I V+ ++ +F E ++ G V+ IS + + +NE+++ +
Sbjct: 5 LMDRKGDRIGVSIRRTLIYKFKEQLQEGMVFTISSSDVASNSDLYRPSRNEYKLNFTINT 64
Query: 217 TVDLCTEEDDSIPKQQFSFRHISEI--ESAENNSIVDVIGIVISVNPSVPILRKNGMETQ 274
V L + +P +SF +I ES +NN +VDVIG++I V G+E +
Sbjct: 65 KVKLS--KTVLVPTNVYSFTPAPDIFNESYDNNYLVDVIGVMIGV----------GVERE 112
Query: 275 RRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSI--G 332
+ G EL + + E Q V+ + KV F GK
Sbjct: 113 Y------ERDGYVEELHSF--LSSGESQN----------AVVVIMLAKVKLFQGKPALQN 154
Query: 333 TIPSTQLFINPDFAEAHELRE 353
ST++ NP E ELR+
Sbjct: 155 AFSSTRITFNPKIGETKELRK 175
>gi|448457207|ref|ZP_21595702.1| replication factor A [Halorubrum lipolyticum DSM 21995]
gi|445810788|gb|EMA60803.1| replication factor A [Halorubrum lipolyticum DSM 21995]
Length = 502
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 30/173 (17%)
Query: 163 GEIRVTCFNA---VVDRF--YEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATST 217
G +RVT ++ + D F E++EVG Y+ + + E+ + T
Sbjct: 210 GRVRVTLWDDKADLADEFEPAEVVEVGDGYVRER-------------DGDLELHVGDRGT 256
Query: 218 VDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRI 277
V+ E+ + +P+ I+E+E E VD+ G VI +P R +G E Q R
Sbjct: 257 VERVEEDVEYVPETT----DIAELEIGET---VDIGGGVIETDPVRTFDRDDGSEGQVRN 309
Query: 278 LNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKS 330
+ +KD +G + + LWGD ++E E+ D F + ++ G +D +
Sbjct: 310 VRVKDDTG-EIRVALWGDKADRE----IELADRVVFTDVEIQDGWQDDLEASA 357
>gi|414868216|tpg|DAA46773.1| TPA: hypothetical protein ZEAMMB73_923308 [Zea mays]
Length = 469
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 455 RYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQD 498
+Y++ ++ D TG WV+ F E E+I+GC A EL ++ E+ D
Sbjct: 222 KYIMVIKVSDPTGEAWVSVFNEHAEKIIGCSADELDRIRKEVHD 265
>gi|344213005|ref|YP_004797325.1| replication factor A [Haloarcula hispanica ATCC 33960]
gi|343784360|gb|AEM58337.1| replication factor A [Haloarcula hispanica ATCC 33960]
Length = 488
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 84/190 (44%), Gaps = 18/190 (9%)
Query: 112 PARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARG-DGKVFSFDLLDSDGGEIRVTCF 170
P I AL Q ++ V +R ++ G +G+V + L D G IRVT +
Sbjct: 159 PGAGSSIDALTMGQSDVTLRGLVLDTDTIRTFDRDDGSEGRVSNLTLGDE-TGRIRVTLW 217
Query: 171 NAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPK 230
+ DR E ++ G I G ++ + E+ + VD E DD +
Sbjct: 218 DDRADRAEE-LDAGAAVEIIDGYVRERDGSL-------ELHVGDQGAVD---EVDDDVAF 266
Query: 231 QQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVEL 290
+ + I+E+E E D+ G+V S +P R +G E Q R + ++D +G + +
Sbjct: 267 EPDA-DPIAEVELEET---ADIAGVVRSADPKRTFDRDDGSEGQVRNVRIQDATG-DIRV 321
Query: 291 TLWGDFCNKE 300
LWGD +K+
Sbjct: 322 ALWGDKADKD 331
>gi|356927738|gb|AET42528.1| hypothetical protein EXVG_00343 [Emiliania huxleyi virus 202]
Length = 201
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 8/117 (6%)
Query: 104 GPILKNEAPARII-PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDG 162
G ILK ++ PI+ + G I+ VT K + R Y N G + F + D +
Sbjct: 92 GGILKKRTNQSLVTPISEIGTTPGNVKIQGVVTFK-NCRPYKN----GFMCKFRIQD-ES 145
Query: 163 GEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVD 219
G I +T +N D+F ++IE + Y+IS ++K A + ++ EI L++TSTV+
Sbjct: 146 GNIGMTAWNDTYDKFDQLIEQNKTYVISGMTVKKANPAY-ETQHTHEITLKSTSTVE 201
>gi|55378982|ref|YP_136832.1| replication factor A [Haloarcula marismortui ATCC 43049]
gi|55231707|gb|AAV47126.1| replication A related protein [Haloarcula marismortui ATCC 43049]
Length = 488
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 83/191 (43%), Gaps = 20/191 (10%)
Query: 112 PARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARG-DGKVFSFDLLDSDGGEIRVTCF 170
P I AL Q ++ V +R ++ G +G+V + L D G IRVT +
Sbjct: 159 PGAGSSIDALTMGQSDVTLRGLVLDTDSIRTFDRDDGSEGRVSNLTLGDE-TGRIRVTLW 217
Query: 171 NAVVDRFYEIIEVGRVYLISKGSLKPAQKNFN-HLKNEWEIFLEATSTVDLCTEEDDSIP 229
+ DR E ++ G I G ++ + H+ ++ + D E D+ P
Sbjct: 218 DDRADRADE-LDAGAAVEIIDGYVRERDGSLELHVGDQGAV----DEVEDDVAFEPDADP 272
Query: 230 KQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVE 289
I+E+E E D+ G+V S +P R +G E Q R + ++D +G +
Sbjct: 273 --------IAEVELEET---ADIAGVVRSADPKRTFDRDDGSEGQVRNVRIQDATG-DIR 320
Query: 290 LTLWGDFCNKE 300
+ LWGD +K+
Sbjct: 321 VALWGDKADKD 331
>gi|118388117|ref|XP_001027159.1| hypothetical protein TTHERM_00726370 [Tetrahymena thermophila]
gi|89308929|gb|EAS06917.1| hypothetical protein TTHERM_00726370 [Tetrahymena thermophila
SB210]
Length = 580
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 106/238 (44%), Gaps = 27/238 (11%)
Query: 128 WAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAV-VDRFYEIIEVGRV 186
+ + A+V +KG ++ K F ++ D + FN ++ +YE IE+G+V
Sbjct: 94 FIVTAKVISKGSIKY----TYQDKSFKIEIYDGSLEHSTLVYFNCQDIENYYEQIELGKV 149
Query: 187 YLISKGSL-KPAQKNFNHLKNEWEIF------LEATSTVDLCTEEDDSIPKQQFSFRHIS 239
Y S+ + K AQK ++E+F L +++L D S ++ I+
Sbjct: 150 YKFSRAIIAKDAQKKEARKCLKYEMFNSQYIQLVEDESINLIYAADFS----KYELIKIN 205
Query: 240 EIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNK 299
+I D++G+V+ PS ++ + R + +K G TL N+
Sbjct: 206 QISEQHQTDHFDILGVVME-EPSKERVKDS---EGRELDTIKFLIGDETRHTLQVSIRNE 261
Query: 300 EGQKLQEMVDVGFFPVLSVKSGKVNDFSG-KSIGTIPSTQLFINPDFAEAHELREWFD 356
G L ++ F V+ +KS VN ++ KS+ + + + +NPD +A +L F+
Sbjct: 262 YGLNL----NLKIFDVVLIKSTHVNVYANQKSVDS--GSGILVNPDIQQALDLLYSFE 313
>gi|448637993|ref|ZP_21676044.1| replication factor A [Haloarcula sinaiiensis ATCC 33800]
gi|448655003|ref|ZP_21681855.1| replication factor A [Haloarcula californiae ATCC 33799]
gi|445763879|gb|EMA15053.1| replication factor A [Haloarcula sinaiiensis ATCC 33800]
gi|445765452|gb|EMA16590.1| replication factor A [Haloarcula californiae ATCC 33799]
Length = 488
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 83/191 (43%), Gaps = 20/191 (10%)
Query: 112 PARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARG-DGKVFSFDLLDSDGGEIRVTCF 170
P I AL Q ++ V +R ++ G +G+V + L D G IRVT +
Sbjct: 159 PGAGSSIDALTMGQSDVTLRGLVLDTDSIRTFDRDDGSEGRVSNLTLGDE-TGRIRVTLW 217
Query: 171 NAVVDRFYEIIEVGRVYLISKGSLKPAQKNFN-HLKNEWEIFLEATSTVDLCTEEDDSIP 229
+ DR E ++ G I G ++ + H+ ++ + D E D+ P
Sbjct: 218 DDRADRADE-LDAGAAVEIIDGYVRERDGSLELHVGDQGAV----DEVEDDVAFEPDADP 272
Query: 230 KQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVE 289
I+E+E E D+ G+V S +P R +G E Q R + ++D +G +
Sbjct: 273 --------IAEVELEET---ADIAGVVRSADPKRTFDRDDGSEGQVRNVRIQDATG-DIR 320
Query: 290 LTLWGDFCNKE 300
+ LWGD +K+
Sbjct: 321 VALWGDKADKD 331
>gi|433639732|ref|YP_007285492.1| single-stranded DNA-binding protein [Halovivax ruber XH-70]
gi|433291536|gb|AGB17359.1| single-stranded DNA-binding protein [Halovivax ruber XH-70]
Length = 486
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 77/169 (45%), Gaps = 20/169 (11%)
Query: 132 ARVTAKGDLRRYNNARG-DGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLIS 190
V G +R ++ G +GKV + L D + G +RVT ++ D EI + V +
Sbjct: 188 GEVLETGSIRTFDRDDGSEGKVSNLTLGD-ETGRVRVTLWDEQADLATEIDD-SEVVEVV 245
Query: 191 KGSLKPAQKNFN-HLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSI 249
G +K N H+ N+ TV++ E+ +P + IE E +
Sbjct: 246 DGYVKERDGNLELHVGNQ--------GTVEVVDEDVQYVPDS-------TPIEDVEIDQT 290
Query: 250 VDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCN 298
VD+ G+V S +P R +G E Q R + ++D +G + + LWG+ +
Sbjct: 291 VDLKGVVRSADPVRTFDRDDGSEGQVRNIRVQDATG-DLRVALWGEKAD 338
>gi|301071243|gb|ADK55677.1| RPA1-like protein 1 [Tetrahymena thermophila]
Length = 505
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 103/238 (43%), Gaps = 27/238 (11%)
Query: 128 WAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAV-VDRFYEIIEVGRV 186
+ + A+V +KG ++ K F ++ D + FN ++ +YE IE+G+V
Sbjct: 19 FIVTAKVISKGSIK----YTYQDKSFKIEIYDGSLEHSTLVYFNCQDIENYYEQIELGKV 74
Query: 187 YLISKGSL-KPAQKNFNHLKNEWEIF------LEATSTVDLCTEEDDSIPKQQFSFRHIS 239
Y S+ + K AQK ++E+F L +++L D S ++ I+
Sbjct: 75 YKFSRAIIAKDAQKKEARKCLKYEMFNSQYIQLVEDESINLIYAADFS----KYELIKIN 130
Query: 240 EIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNK 299
+I D++G+V+ + G R + +K G TL N+
Sbjct: 131 QISEQHQTDHFDILGVVMEEPSKERVKDSEG----RELDTIKFLIGDETRHTLQVSIRNE 186
Query: 300 EGQKLQEMVDVGFFPVLSVKSGKVNDFSG-KSIGTIPSTQLFINPDFAEAHELREWFD 356
G L ++ F V+ +KS VN ++ KS+ + + + +NPD +A +L F+
Sbjct: 187 YGLNL----NLKIFDVVLIKSTHVNVYANQKSVDS--GSGILVNPDIQQALDLLYSFE 238
>gi|357462853|ref|XP_003601708.1| hypothetical protein MTR_3g084550 [Medicago truncatula]
gi|355490756|gb|AES71959.1| hypothetical protein MTR_3g084550 [Medicago truncatula]
Length = 231
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 84/201 (41%), Gaps = 34/201 (16%)
Query: 157 LLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATS 216
L+D G I V+ ++ +F E ++ G V+ IS + + +NE+++ +
Sbjct: 5 LMDRKGDRIGVSIRRTLIYKFKEQLQEGMVFTISSSDVASNSGLYRPSRNEYKLNFTINT 64
Query: 217 TVDLCTEEDDSIPKQQFSFRHISEI--ESAENNSIVDVIGIVISVNPSVPILRKNGMETQ 274
V L + +P +SF ++ ES +NN +VDVIG++I V G+E +
Sbjct: 65 KVKLS--KTVLVPTNVYSFTPAPDVFNESYDNNYLVDVIGVMIGV----------GVERE 112
Query: 275 RRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSI--G 332
+ VE L + E Q V+ + KV F GK
Sbjct: 113 YE-------TDEYVE-ELHSFLSSGESQN----------AVVVIMLAKVKLFQGKPALQN 154
Query: 333 TIPSTQLFINPDFAEAHELRE 353
ST++ NP+ E ELR+
Sbjct: 155 AFSSTRITFNPEIGETKELRK 175
>gi|226492828|ref|NP_001143032.1| uncharacterized protein LOC100275500 [Zea mays]
gi|195613244|gb|ACG28452.1| hypothetical protein [Zea mays]
gi|413956495|gb|AFW89144.1| hypothetical protein ZEAMMB73_132037 [Zea mays]
Length = 202
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 60/132 (45%), Gaps = 7/132 (5%)
Query: 174 VDRFYEIIEVGRVYLIS--KGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQ 231
V F ++ VY + K SL P + NF HL E++L+ + V+ T P
Sbjct: 5 VKHFDNLLHEKHVYKMHNVKFSLHPGEFNFRHLNGSMELYLDQQTIVEPYTVPIQMAPFP 64
Query: 232 QFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELT 291
+ +++++ N ++VD++ IV+ + + + R+I+ + D G +
Sbjct: 65 KQILLNLADVAELPNRTLVDIMAIVVHFDT----IHRTMWGPFRKIV-IMDARGYLHIIK 119
Query: 292 LWGDFCNKEGQK 303
+WGD NK +
Sbjct: 120 VWGDLLNKNALR 131
>gi|448680564|ref|ZP_21690881.1| replication factor A [Haloarcula argentinensis DSM 12282]
gi|445769008|gb|EMA20085.1| replication factor A [Haloarcula argentinensis DSM 12282]
Length = 488
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 83/191 (43%), Gaps = 20/191 (10%)
Query: 112 PARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARG-DGKVFSFDLLDSDGGEIRVTCF 170
P I AL Q ++ V +R ++ G +G+V + L D G IRVT +
Sbjct: 159 PGAGSSIDALTMGQSDVTLRGLVLDTDSIRTFDRDDGSEGRVSNLTLGDE-TGRIRVTLW 217
Query: 171 NAVVDRFYEIIEVGRVYLISKGSLKPAQKNFN-HLKNEWEIFLEATSTVDLCTEEDDSIP 229
+ DR E ++ G + G ++ + H+ ++ + D E D+ P
Sbjct: 218 DDRADRAEE-LDAGAAVEVIDGYVRERDGSLELHVGDQGAV----DEVEDDVAFEPDADP 272
Query: 230 KQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVE 289
I+E+E E D+ G+V S +P R +G E Q R + ++D +G +
Sbjct: 273 --------IAEVELEET---ADIAGVVRSADPKRTFDRDDGSEGQVRNVRIQDATG-DIR 320
Query: 290 LTLWGDFCNKE 300
+ LWGD +K+
Sbjct: 321 VALWGDKADKD 331
>gi|402223681|gb|EJU03745.1| hypothetical protein DACRYDRAFT_105902 [Dacryopinax sp. DJM-731
SS1]
Length = 432
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 90/417 (21%), Positives = 161/417 (38%), Gaps = 68/417 (16%)
Query: 167 VTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTE--- 223
+T V+D + VG V + L+ Q +K W L + VD +
Sbjct: 6 LTLKEEVIDGLLKNAAVGVVMHLESVCLQETQ-----VKYLWNGLLPIEAVVDHNSRIEF 60
Query: 224 --EDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISV------NPSVPILRKNG----- 270
+D SIP IS + + + + V++IG+V+ V + + RK+G
Sbjct: 61 PLQDHSIPPLSLELTKISLLRATKVGTEVNIIGVVLHVGKVEAMSEKKRVARKSGDGESK 120
Query: 271 -------METQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKV 323
E RR + L D S + + LW D K +L +K +
Sbjct: 121 SKEEDPKGERVRREVQLVDDSAHIMCVALWKDCATSMAMK--------HGSILLLKKVVI 172
Query: 324 NDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATV-SISREIAAG-GAKNEIH 381
G S+ T++ + AE L+ W+++ N T IS + G G +I
Sbjct: 173 AAHDGISLNMYKKTKVDKDLKVAEGTSLKNWYNNLASNPQTFQHISSSYSTGSGLFTDIE 232
Query: 382 K-----TVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQS 436
T+ +++ LG S V I + ++ Y AC + CNK + +S
Sbjct: 233 PCLNVLTIPEVQKSNLGTSSCIHTFNVEGCIQVVDGNAV-YEACT----NTHCNKGIEKS 287
Query: 437 GNRWQCDRCNQEIDECDYR---YLLQAQI-QDQTGLTWVTAFQESGEEILGCPAKELYML 492
CD E D R Y L+ I QD V+ F +++L A E+
Sbjct: 288 ----PCDIEGHEDMSDDNRRFCYHLKLTIGQDHRHSIDVSVFMLLADKMLEEDAMEVVKK 343
Query: 493 KYEL--QDDVRFGEIIRSRVFNQYLFRLKIKEELYGDE------QRVKITVIRADQV 541
+ + Q D G +++++ + F ++ +L+ +E +++ + RA+Q+
Sbjct: 344 RDHMPGQSDEVLGALLKTK----WRFTIQACTQLWKNEWSSEWSRKLTYVMTRAEQL 396
>gi|302789145|ref|XP_002976341.1| hypothetical protein SELMODRAFT_416482 [Selaginella moellendorffii]
gi|300155971|gb|EFJ22601.1| hypothetical protein SELMODRAFT_416482 [Selaginella moellendorffii]
Length = 266
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 453 DYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFG-EIIRSRVF 511
+++Y L+ I+D W FQE+ EI+G PAKEL ++ E + I S+++
Sbjct: 169 EFKYALKMCIKDSGSRVWAIVFQEAALEIVGMPAKELATIQDETYPAFSLHIDGIHSKIY 228
Query: 512 NQYLFRLKIKEELYGDEQRV 531
N F+++ K E Y D +++
Sbjct: 229 N---FKIRSKLEKYQDMEKL 245
>gi|289581867|ref|YP_003480333.1| OB-fold tRNA/helicase-type nucleic acid binding protein [Natrialba
magadii ATCC 43099]
gi|289531420|gb|ADD05771.1| nucleic acid binding OB-fold tRNA/helicase-type [Natrialba magadii
ATCC 43099]
Length = 492
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 74/163 (45%), Gaps = 20/163 (12%)
Query: 138 GDLRRYNNARG-DGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKP 196
G +R ++ G +GKV + L DS G +RVT ++ D EI E G + G +K
Sbjct: 189 GTVRTFDRDDGSEGKVSNLVLGDS-SGRVRVTLWDEQADLATEI-EAGTTVEVVDGYVKE 246
Query: 197 AQKNFN-HLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGI 255
+ H+ N A VD E +P+ + IES E VD+ G+
Sbjct: 247 RDGSLELHVGNRG-----AVEEVDAEVE---YVPES-------TSIESIEIGQEVDLAGV 291
Query: 256 VISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCN 298
V S +P R +G E Q R + ++D +G + + LWG+ +
Sbjct: 292 VRSADPKRTFDRDDGSEGQVRNIRVQDATG-DIRVALWGEKAD 333
>gi|15789450|ref|NP_279274.1| replication factor A [Halobacterium sp. NRC-1]
gi|169235165|ref|YP_001688365.1| replication factor A [Halobacterium salinarum R1]
gi|10579780|gb|AAG18754.1| replication A related protein [Halobacterium sp. NRC-1]
gi|167726231|emb|CAP13011.1| replication protein A [Halobacterium salinarum R1]
Length = 474
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 63/137 (45%), Gaps = 17/137 (12%)
Query: 163 GEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCT 222
G +RVT ++ D ++ + G V I G ++ + + E+ + T V
Sbjct: 214 GRVRVTLWDDQADTATDL-DAGAVVEIVDGYVREREGSL-------ELHVGDTGAVT--- 262
Query: 223 EEDDSIPKQQFSFR-HISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLK 281
+P SF + I+S E + D+ G+V SV+P+ R +G E Q R + L+
Sbjct: 263 ----PVPDADVSFVPDTTSIDSLEQDDTADIAGVVRSVDPTRTFDRDDGSEGQVRNVRLQ 318
Query: 282 DTSGRSVELTLWGDFCN 298
D +G + + LWG+ +
Sbjct: 319 DDTG-DIRVALWGEKAD 334
>gi|448396828|ref|ZP_21569276.1| replication factor A [Haloterrigena limicola JCM 13563]
gi|445673357|gb|ELZ25918.1| replication factor A [Haloterrigena limicola JCM 13563]
Length = 482
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 74/163 (45%), Gaps = 20/163 (12%)
Query: 140 LRRYNNARG-DGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQ 198
+R ++ G +GKV + L DS G +RVT ++ DR E+ E G + G +K
Sbjct: 186 VRTFDRDDGSEGKVSNLVLGDS-TGRVRVTLWDEQADRATEL-EAGATVEVIDGYVKERD 243
Query: 199 KNFN-HLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVI 257
H+ N V+ E+ + +P+ + IE E VD+ G+V
Sbjct: 244 GQLELHVGNR--------GAVEEVDEDVEYVPES-------TPIEDLEIGQTVDIAGVVR 288
Query: 258 SVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKE 300
S +P R +G E Q R + ++D +G + + LWG+ + +
Sbjct: 289 SADPKRTFDRDDGSEGQVRNIRVQDATG-DIRVALWGEKADTD 330
>gi|147769421|emb|CAN65830.1| hypothetical protein VITISV_038135 [Vitis vinifera]
Length = 904
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Query: 254 GIVISVNPSVPILRKNGME-TQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGF 312
G+V SV+P++ I RK+ + +R + + D + +SV ++LW D GQ+L + D
Sbjct: 766 GVVQSVSPTMSIRRKSNKDIVPKRDITIADKTKKSVVVSLWNDHGTNVGQELLDNADK-- 823
Query: 313 FPVLSVKSGKVND 325
FP++++KS KV +
Sbjct: 824 FPIVAIKSLKVGE 836
>gi|448282722|ref|ZP_21474006.1| replication factor A [Natrialba magadii ATCC 43099]
gi|445575686|gb|ELY30154.1| replication factor A [Natrialba magadii ATCC 43099]
Length = 487
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 74/163 (45%), Gaps = 20/163 (12%)
Query: 138 GDLRRYNNARG-DGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKP 196
G +R ++ G +GKV + L DS G +RVT ++ D EI E G + G +K
Sbjct: 184 GTVRTFDRDDGSEGKVSNLVLGDS-SGRVRVTLWDEQADLATEI-EAGTTVEVVDGYVKE 241
Query: 197 AQKNFN-HLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGI 255
+ H+ N A VD E +P+ + IES E VD+ G+
Sbjct: 242 RDGSLELHVGNRG-----AVEEVDAEVE---YVPES-------TSIESIEIGQEVDLAGV 286
Query: 256 VISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCN 298
V S +P R +G E Q R + ++D +G + + LWG+ +
Sbjct: 287 VRSADPKRTFDRDDGSEGQVRNIRVQDATG-DIRVALWGEKAD 328
>gi|326508252|dbj|BAJ99393.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 333
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 424 IGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEIL 482
IG R+CNKKV + GN + C +C +E + RY L+ +I D + T T F+ ++++
Sbjct: 14 IGCRKCNKKVQKQGNHFYCPKCEKEPENTCPRYKLKLEICDLSATTTCTMFEAEAKKLI 72
>gi|357516565|ref|XP_003628571.1| Fgenesh protein [Medicago truncatula]
gi|355522593|gb|AET03047.1| Fgenesh protein [Medicago truncatula]
Length = 725
Score = 43.9 bits (102), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 71/365 (19%), Positives = 151/365 (41%), Gaps = 34/365 (9%)
Query: 118 IAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL--DSDGGEIRVTCFNAVVD 175
+ AL+P + +I RV D+ + G+V S +LL D +G + T V+
Sbjct: 191 LVALDPDKTNCSIMVRVLRLWDV---ESTLMPGRVNSSELLLMDIEGYRMHATVPPFCVE 247
Query: 176 RFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSF 235
+F ++ RVY+I+ S+ P F + + I + DL +IP+ + S
Sbjct: 248 KFRHMLVENRVYIITMFSVLPNLDEFMSTSSAYRIVFHQDT--DLMATTCSAIPECRLSL 305
Query: 236 RHISEI--ESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRS-VELTL 292
+++ ++ + VDVIG++ +++ + N + + +L + T R+ E L
Sbjct: 306 ITSADLLKKTRGCSYAVDVIGLLTAMHHEYFLDSTNHLSS---VLKFELTDERTKFECAL 362
Query: 293 WGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPS--TQLFINPDFAEAHE 350
G + + L++ V + P++ ++ +V +G + T++ NP E +
Sbjct: 363 TGKYIGIFHELLKK-VQLR-LPIVVIQFARVIAENGTPVVCAEKDITKVSFNPTIPEVTQ 420
Query: 351 LREWFDSGGKNAATVS------ISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVR 404
++ G ++ V +S +++ +K K++ ++ L E +V
Sbjct: 421 FQDRLLIAGPKSSIVKFNPNFRMSVDVSLSFSKMYPKKSIKEL----LVPPEGGFFVVCA 476
Query: 405 AFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQD 464
F K D + Y C CN + + CD C++ ++ + ++D
Sbjct: 477 RVAGFRKVDQWFYPVC-------DCNSFMGNEFGFYLCDVCHRTSFNVTPKFRFELSVED 529
Query: 465 QTGLT 469
G+
Sbjct: 530 DGGVA 534
>gi|413948227|gb|AFW80876.1| hypothetical protein ZEAMMB73_300974 [Zea mays]
Length = 217
Score = 43.9 bits (102), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 62/139 (44%), Gaps = 7/139 (5%)
Query: 167 VTCFNAVVDRFYEIIEVGRVYLIS--KGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEE 224
+T + V F ++ VY + K L P + NF HL E++L + V+ T
Sbjct: 1 MTSWYETVKHFNNLLHEKHVYKMHNIKFGLHPGEFNFRHLNGPMELYLNQQTIVEPYTVP 60
Query: 225 DDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTS 284
P + F ++++I N ++VD++ IV+ ++ + + R+I+ + D
Sbjct: 61 IQMPPFPKHIFLNLADIAELPNRTLVDIMAIVVHLDT----IHRTMWGPFRKIV-IMDVK 115
Query: 285 GRSVELTLWGDFCNKEGQK 303
+ +WGD N+ +
Sbjct: 116 WSLHIIKVWGDLLNENALR 134
>gi|38346586|emb|CAE04650.2| OSJNBa0061G20.6 [Oryza sativa Japonica Group]
Length = 1410
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 37/184 (20%), Positives = 81/184 (44%), Gaps = 10/184 (5%)
Query: 118 IAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVF--SFDLLDSDGGEIRVTCFNAVVD 175
I+ L P G I R++ + +N+ + D + + L+D G I F
Sbjct: 636 ISKLEPGLGNPRIYVRLSR---MWNFNDPKDDISLLHVALVLVDETEGSIAAQIFPPDGK 692
Query: 176 RFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSF 235
F ++ G++Y ++ ++ +++ + N I + V+ S P +S
Sbjct: 693 LFKPLLSEGKIYYLTHYIVRNCSRSYKPVSNSLAIAFTGWTIVEEYVNAPTSFPFYTYSL 752
Query: 236 RHISEIESAENN--SIVDVIGIVISVNP--SVPILRKNGMETQRRILNLKDTSGRSVELT 291
+ +++ + +N S D IG++ V+ SV ++G +R + + D + ++ ++
Sbjct: 753 KSFNQLTALLDNKDSFTDTIGVITEVSSITSVRSRTRDGDSLKRNVF-ISDANNATIRVS 811
Query: 292 LWGD 295
LWGD
Sbjct: 812 LWGD 815
>gi|358349135|ref|XP_003638595.1| hypothetical protein MTR_137s0043 [Medicago truncatula]
gi|355504530|gb|AES85733.1| hypothetical protein MTR_137s0043 [Medicago truncatula]
Length = 372
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 64/144 (44%), Gaps = 4/144 (2%)
Query: 157 LLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATS 216
L+D GG I TC +V +F +++ G Y + + + + ++ ++ + S
Sbjct: 27 LVDEKGGRIHATCRKDLVAKFRSMVQEGGAYQLENAMVGFNESPYKVTSHKHKLSMMHNS 86
Query: 217 TVDLCTEEDDSIPKQQFSFRHISEIESAENNSI-VDVIGIVISVNPSVPILRKNGMETQR 275
T +IP F F+ +EI S+ + DVIG VI + K+G + +
Sbjct: 87 T--FTKVHSPAIPMNVFEFKPFNEILSSTVEEVSTDVIGHVIE-RGDIRETEKDGRKNRV 143
Query: 276 RILNLKDTSGRSVELTLWGDFCNK 299
L L+D + +LWG+ +K
Sbjct: 144 IDLTLEDLENNRLHCSLWGEHADK 167
>gi|297797958|ref|XP_002866863.1| hypothetical protein ARALYDRAFT_912430 [Arabidopsis lyrata subsp.
lyrata]
gi|297312699|gb|EFH43122.1| hypothetical protein ARALYDRAFT_912430 [Arabidopsis lyrata subsp.
lyrata]
Length = 244
Score = 43.9 bits (102), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 78/184 (42%), Gaps = 9/184 (4%)
Query: 118 IAALNPYQGRWAIKARVTAKGDLRRYNNARGD-GKVFSFDLLDSDGGEIRVTCFNAVVDR 176
I +NP + IK + LR + + D G L+D G I T + + +
Sbjct: 14 IDDINPIHDQNKIKVLI-----LRLWKAYQRDAGNTIEMVLVDEKGSRIHATVEDKNIKK 68
Query: 177 FYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQF-SF 235
F +++ G V ++ L ++ ++I T+ V C + +P++ F F
Sbjct: 69 FDSVLKEGDVVTLNPFKLIKYSGDYKSNSLSFKILFYRTTQVKPCDDFPKEVPEKYFVEF 128
Query: 236 RHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGD 295
+ S + VDVIG +++V P + ++ G T + + L+D + TLW D
Sbjct: 129 GDVLN-GSRDTRVFVDVIGQIVNVGP-IEDIKIRGKSTPKLDVELRDRGNVRLICTLWAD 186
Query: 296 FCNK 299
F +
Sbjct: 187 FAKQ 190
>gi|448376675|ref|ZP_21559675.1| replication factor A [Halovivax asiaticus JCM 14624]
gi|445656411|gb|ELZ09245.1| replication factor A [Halovivax asiaticus JCM 14624]
Length = 476
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 20/169 (11%)
Query: 132 ARVTAKGDLRRYNNARGD-GKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLIS 190
V G +R ++ G GKV + L D + G +RVT ++ D EI + V +
Sbjct: 178 GEVLETGSIRTFDRDDGSKGKVSNLTLGD-ETGRVRVTLWDEQADLATEIDD-SEVVEVV 235
Query: 191 KGSLKPAQKNFN-HLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSI 249
G +K N H+ N+ TV++ E+ +P + IE E +
Sbjct: 236 DGYVKERDGNLELHVGNQ--------GTVEVVDEDVQYVPDS-------TPIEDVEIDQT 280
Query: 250 VDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCN 298
VD+ G+V S +P R +G E Q R + ++D +G + + LWG+ +
Sbjct: 281 VDLKGVVRSADPVRTFDRDDGSEGQVRNIRVQDATG-DLRVALWGEKAD 328
>gi|242041191|ref|XP_002467990.1| hypothetical protein SORBIDRAFT_01g037710 [Sorghum bicolor]
gi|241921844|gb|EER94988.1| hypothetical protein SORBIDRAFT_01g037710 [Sorghum bicolor]
Length = 55
Score = 43.5 bits (101), Expect = 0.27, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 18/70 (25%)
Query: 285 GRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPD 344
G++V ++LW D GQ+L +MVD PV+++KS KV+DF D
Sbjct: 4 GKTVSISLWDDLATTTGQELLDMVDSS--PVIAMKSLKVSDFQ----------------D 45
Query: 345 FAEAHELREW 354
EA L+ W
Sbjct: 46 LPEAQNLKSW 55
>gi|357458969|ref|XP_003599765.1| Fgenesh protein, partial [Medicago truncatula]
gi|355488813|gb|AES70016.1| Fgenesh protein, partial [Medicago truncatula]
Length = 239
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 78/200 (39%), Gaps = 33/200 (16%)
Query: 117 PIAAL---NPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFD--LLDSDGGEIRVTCFN 171
PI +L P + W I+ RV L R ++ G+V + LLD DG I+ T
Sbjct: 4 PITSLLNVRPPRMAWNIRVRVVR---LWRIMSSLVRGRVIFMEMVLLDQDGNRIQATIPP 60
Query: 172 AVVDRFYEIIEVGRVYLISKGSLKPAQK-----NFNHLKNEWEIFLEATSTVDLCTEEDD 226
VDRF RVY+ S + P + + NH WE + D
Sbjct: 61 DCVDRFQNTFHENRVYMFSNFKVLPNDRSTRVTSHNHRLKLWE---------ETVVVNHD 111
Query: 227 SIPKQQFSFRHISEIESAENN----SIVDVIGIVISVNPSVPILRKNGMETQRRI----- 277
Q+F F S + E+ ++DV G++ S++ + + + T R
Sbjct: 112 GYIIQRFGFSFFSSAQILEHQHGCGHLIDVFGLLTSLHYDFVVDARQNLATIARFGLTDE 171
Query: 278 -LNLKDTSGRSVELTLWGDF 296
+ G ++E L+G F
Sbjct: 172 RFDFYQCRG-TIECVLYGRF 190
>gi|357515665|ref|XP_003628121.1| ATP-dependent DNA helicase PIF1 [Medicago truncatula]
gi|355522143|gb|AET02597.1| ATP-dependent DNA helicase PIF1 [Medicago truncatula]
Length = 637
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 105/249 (42%), Gaps = 32/249 (12%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
I P+AA+ + ++ RV + +NN D + LLD + G+I+ + V
Sbjct: 5 ITPVAAIVAGKINIKLRVRVVHVWTVFEFNNPNEDNSIHML-LLDDNLGKIQASTKKHWV 63
Query: 175 DRFYEIIEVGRVY-----LISKGSLK--PAQKNFN-HLKNEWEIF-LEATSTVDLCTEED 225
R +E G Y L++K K Q +F +L ++ + F +AT+
Sbjct: 64 PRIRSNVEEGSTYDNENVLVTKNDPKYQVTQHSFKLNLIDKTKFFKFDATT--------- 114
Query: 226 DSIPKQQFSFRHISEI-ESAENNSIVDVIGIVISVNPSVPILRK---NGMETQRRILNLK 281
IP F F +EI E+ +VDVIG + + L++ NG ++ L L+
Sbjct: 115 --IPLNHFDFMPFNEILEAKREEKVVDVIGQAVERDE----LKEKDVNGRRSKIMDLTLQ 168
Query: 282 DTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFI 341
D R V TLW ++ + L D V+ ++ K+ + G I I +T+
Sbjct: 169 DFESRRVRCTLWANYAERMNSFLVAH-DPSSPVVVLIQHCKLKKYQG--IMGISNTKRMT 225
Query: 342 NPDFAEAHE 350
D EA E
Sbjct: 226 IEDLIEATE 234
>gi|448356409|ref|ZP_21545142.1| replication factor A [Natrialba chahannaoensis JCM 10990]
gi|445653442|gb|ELZ06313.1| replication factor A [Natrialba chahannaoensis JCM 10990]
Length = 490
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 74/163 (45%), Gaps = 20/163 (12%)
Query: 138 GDLRRYNNARG-DGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKP 196
G +R ++ G +GKV + L DS G +RVT ++ D EI E G + G +K
Sbjct: 184 GTVRTFDRDDGSEGKVSNLVLGDSTG-RVRVTLWDEQADLATEI-ETGTTVEVVDGYVKE 241
Query: 197 AQKNFN-HLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGI 255
+ H+ N A VD E +P+ + IES E VD+ G+
Sbjct: 242 RDGSLELHVGNRG-----AVEEVDAEVE---YVPES-------TSIESIEIGQEVDLAGV 286
Query: 256 VISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCN 298
V S +P R +G E Q R + ++D +G + + LWG+ +
Sbjct: 287 VRSADPKRTFDRDDGSEGQVRNIRVQDATG-DIRVALWGEKAD 328
>gi|413916177|gb|AFW56109.1| hypothetical protein ZEAMMB73_034381 [Zea mays]
Length = 368
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 65/138 (47%), Gaps = 10/138 (7%)
Query: 127 RWAIKARVTAKGDLR-RYNNARGDGKVFSFDLLDSDGGEIR-VTCFNAVVDRFYEIIEVG 184
+++I ARV K + R+ + + F L D +G +I +T V F ++
Sbjct: 206 KYSIVARVEVKFPIEPRFRDRQ------HFVLSDINGAKIEAITYMYETVKHFDNLLHEK 259
Query: 185 RVYLIS--KGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIE 242
VY + K SL P + NF HL E+ L+ + V+ T P + ++++I
Sbjct: 260 HVYKMHNVKFSLHPGEFNFRHLNGPMELCLDQQTIVEPYTVPIQMAPFPKQILLNLADIA 319
Query: 243 SAENNSIVDVIGIVISVN 260
N ++VD++ +V+ ++
Sbjct: 320 ELPNRTLVDIMAVVVHLD 337
>gi|402220416|gb|EJU00488.1| hypothetical protein DACRYDRAFT_109206 [Dacryopinax sp. DJM-731
SS1]
Length = 109
Score = 43.5 bits (101), Expect = 0.30, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 39/77 (50%)
Query: 181 IEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISE 240
+E G+VY +L+ A+ + N W++ L ++ IPK F F H++
Sbjct: 13 LETGKVYAFEGLALEEAKLKYMRANNWWQLQLHTECACVWNIVDNGLIPKIYFDFHHLNV 72
Query: 241 IESAENNSIVDVIGIVI 257
+E + N VD++GI++
Sbjct: 73 LEKIDANQHVDIVGIIL 89
>gi|391334312|ref|XP_003741549.1| PREDICTED: replication factor A protein 1-like [Metaseiulus
occidentalis]
Length = 232
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 95/213 (44%), Gaps = 11/213 (5%)
Query: 148 GDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNE 207
G G VF +L GEI + + + +I VG+ Y I+ +K + ++E
Sbjct: 15 GLGTVFPNFVLSDTSGEINLIASRDSTEEIFGMITVGQGYKINAFKVKAVNPQYRATEHE 74
Query: 208 WEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILR 267
E+ L S + T D +PK Q + E+ S N+ VDV+ +V V P
Sbjct: 75 CELQLTKLSKLVPITGND--LPKTQAQTTLLIELLSKPVNTTVDVLVVVFDVRPPQTFNC 132
Query: 268 KNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFS 327
++G+ +++ + + D + V L +W +F K K + V +K+ V D++
Sbjct: 133 RDGINREKQTVTVLDDCMKMVNLGIWSEFVGKLDGKEGDAV--------ILKNLHVRDYN 184
Query: 328 G-KSIGTIPSTQLFINPDFAEAHELREWFDSGG 359
G + T +T + AEA L++WF + G
Sbjct: 185 GTRQPSTTTNTIIREAGRDAEAERLQKWFKTDG 217
>gi|297727013|ref|NP_001175870.1| Os09g0456900 [Oryza sativa Japonica Group]
gi|255678952|dbj|BAH94598.1| Os09g0456900 [Oryza sativa Japonica Group]
Length = 206
Score = 43.5 bits (101), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 71/168 (42%), Gaps = 4/168 (2%)
Query: 118 IAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRF 177
I+ L P G I+ RV+ + R N+ + L+D G I + + F
Sbjct: 20 ISKLEPGLGNPTIRLRVSRFWEFRDQNDENILYHL-GLVLVDGTGASIAAQIMPPLDELF 78
Query: 178 YEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRH 237
I G+VY ++ ++ + + N I L ST++ CT+ ++ P +S
Sbjct: 79 APAITEGKVYDLTFYRVRQCTSQYRPVGNMQSIALTKWSTLEECTDVPENFPNYVYSLTP 138
Query: 238 ISEIESAEN--NSIVDVIGIVISVNPSVPI-LRKNGMETQRRILNLKD 282
++ N +S D IGI+ + PI R E+ +R + ++D
Sbjct: 139 YDQLRGRVNRKDSFTDAIGIITEITSVTPIQTRTKDGESLKRSIYIRD 186
>gi|448494503|ref|ZP_21609490.1| replication factor A [Halorubrum californiensis DSM 19288]
gi|445689338|gb|ELZ41578.1| replication factor A [Halorubrum californiensis DSM 19288]
Length = 497
Score = 43.5 bits (101), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 16/138 (11%)
Query: 163 GEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCT 222
G +RVT ++ D E + G V + G ++ + E+ + TV+
Sbjct: 210 GRVRVTLWDDKAD-LAEEFDPGEVVEVGDGYVRERDGDL-------ELHVGDRGTVERVD 261
Query: 223 EEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKD 282
E+ + +P+ ++I E + VD+ G VI +P R +G E Q R + +KD
Sbjct: 262 EDVEYVPE-------TTDIADLEIDQTVDIGGGVIETDPKRTFDRDDGSEGQVRNVRIKD 314
Query: 283 TSGRSVELTLWGDFCNKE 300
+G + + LWGD ++E
Sbjct: 315 ETG-EIRVALWGDKADRE 331
>gi|357488297|ref|XP_003614436.1| Replication protein A1-like protein [Medicago truncatula]
gi|355515771|gb|AES97394.1| Replication protein A1-like protein [Medicago truncatula]
Length = 578
Score = 43.5 bits (101), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 111/257 (43%), Gaps = 47/257 (18%)
Query: 118 IAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRF 177
I +N ++ W I RV D+ N++ + L D + I++ + D+F
Sbjct: 73 IKNINDFKSLWKIAVRVV---DMWTVANSKNKQHI-EMVLCDKEVDRIQIILPFELKDQF 128
Query: 178 YEIIEVGRVYLISKGSLKPAQKNFNHLKNE----------WEIFLEATSTVDLCTEEDDS 227
GR+ + +L+ NF+ KNE W +F TS VD + D
Sbjct: 129 K-----GRIVENTTFTLQ----NFDVEKNEMSIKATDHPFWLVFNGGTS-VDNIDKHD-- 176
Query: 228 IPKQQFSFRHISEIE--SAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILN----LK 281
IPK F+F+ EI+ + + ++DVIG + L N + R + +K
Sbjct: 177 IPKPSFNFKDFDEIKKGALRPDVLIDVIG-------AFHELGYNQTQAGSRKIQINFWMK 229
Query: 282 DTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFP-VLSVKSGKVNDFSGK-SIGT---IPS 336
D G + TLW DF Q L + F P ++ + + K+ + + K +G +
Sbjct: 230 DLKGTLLSCTLWEDFG---LQFLNFCNNSEFGPTIILLHNAKIKEATYKYELGVSNAWNA 286
Query: 337 TQLFINPDFAEAHELRE 353
T+LFINP+F E E ++
Sbjct: 287 TKLFINPEFLEVLEFKQ 303
>gi|357511465|ref|XP_003626021.1| ATP-dependent DNA helicase PIF1 [Medicago truncatula]
gi|355501036|gb|AES82239.1| ATP-dependent DNA helicase PIF1 [Medicago truncatula]
Length = 887
Score = 43.1 bits (100), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 76/172 (44%), Gaps = 22/172 (12%)
Query: 315 VLSVKSGKVNDFSGKSI--GTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIA 372
V++V+ K+ F G+++ TI +T++ NP F A L++ ++ + IS+
Sbjct: 277 VVAVQLTKIKIFQGQAMIQNTINATKVLFNPTFTAALLLKKRM-VENDDSPSPDISKITE 335
Query: 373 AGGAKNEIHKTVSQIKN-EGLGRSEKPDWVTVRAFITFIKSDS-FCYTACPLMIGDRQCN 430
A E +S + EGL + EK + V + I DS + YT+C + CN
Sbjct: 336 ASKVSVEDFLNLSPMTTVEGL-KEEK--FFAVFGTVNVIVDDSDWWYTSCVV------CN 386
Query: 431 KKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEIL 482
KKV + C +CN +Y+++ ++ D T F E+
Sbjct: 387 KKVYPDEKMYFCSKCN--------KYMIKMKVVDHTDFATFVLFDRDAAELF 430
>gi|297817956|ref|XP_002876861.1| hypothetical protein ARALYDRAFT_904572 [Arabidopsis lyrata subsp.
lyrata]
gi|297322699|gb|EFH53120.1| hypothetical protein ARALYDRAFT_904572 [Arabidopsis lyrata subsp.
lyrata]
Length = 303
Score = 43.1 bits (100), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 78/184 (42%), Gaps = 9/184 (4%)
Query: 118 IAALNPYQGRWAIKARVTAKGDLRRYNNARGD-GKVFSFDLLDSDGGEIRVTCFNAVVDR 176
I +NP + IK + LR + + D G L+D G I T + + +
Sbjct: 14 IDDINPIHDQNKIKVLI-----LRLWKAYQRDAGNTIEMVLVDEKGSRIHATVEDKNIKK 68
Query: 177 FYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQF-SF 235
F +++ G V ++ L ++ ++I T+ V C + +P++ F F
Sbjct: 69 FDSVLKEGDVVTLNPFKLIKYSGDYKSNSLSFKILFYRTTQVKPCDDFPKEVPEKYFVEF 128
Query: 236 RHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGD 295
+ S + VDVIG +++V P + ++ G T + + L+D + TLW D
Sbjct: 129 GDVLN-GSRDTRVFVDVIGQIVNVGP-IEDIKIRGKSTPKLDVELRDRGNVRLICTLWAD 186
Query: 296 FCNK 299
F +
Sbjct: 187 FAKQ 190
>gi|414865606|tpg|DAA44163.1| TPA: hypothetical protein ZEAMMB73_040025 [Zea mays]
Length = 202
Score = 43.1 bits (100), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 58/132 (43%), Gaps = 7/132 (5%)
Query: 174 VDRFYEIIEVGRVYLIS--KGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQ 231
V F ++ VY + K SL P + NF HL E+ L+ + V+ T P
Sbjct: 5 VKHFDNLLHEKHVYKMHNVKFSLHPGEFNFRHLNGPMELCLDQQTIVEPYTVPIQMAPFP 64
Query: 232 QFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELT 291
+ ++++I N ++VD++ +V+ ++ + M R + + D G +
Sbjct: 65 KQILLNLADIAELPNRTLVDIMAVVVHLDTI-----QRTMWGPFRKIVIMDARGYLHIIK 119
Query: 292 LWGDFCNKEGQK 303
+WGD NK +
Sbjct: 120 VWGDLLNKNALR 131
>gi|297813529|ref|XP_002874648.1| hypothetical protein ARALYDRAFT_352148 [Arabidopsis lyrata subsp.
lyrata]
gi|297320485|gb|EFH50907.1| hypothetical protein ARALYDRAFT_352148 [Arabidopsis lyrata subsp.
lyrata]
Length = 331
Score = 43.1 bits (100), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 63/287 (21%), Positives = 112/287 (39%), Gaps = 26/287 (9%)
Query: 107 LKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL--DSDGGE 164
L+ + P I PI+ L I R+ + N + DLL D G
Sbjct: 3 LQKDMPLDITPISQLTLGTDPCKINVRIVRLWGFPKKNKPE---EFTGIDLLIVDEKGSR 59
Query: 165 IRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEI-FLEATSTVDLCTE 223
I+ + ++D+F + ++ G+ ++ L P F + ++I F+ T C +
Sbjct: 60 IQASVKGKLLDKFQKDLKEGKCCVLMNFELCPNLGKFRSCDHPYKINFIFYT-----CVK 114
Query: 224 EDDSIPKQQ--FSFRHISEIESAENNS--IVDVIGIVISVNPSVPILRKNGMETQRRILN 279
+ IP + F+ EI + N+ +D+IG ++ +N I G T+ L
Sbjct: 115 PSEEIPNLEACFNLCPFPEILARRNDDTIFIDIIGEIVGMNEVKSITTAEG-PTKLLNLQ 173
Query: 280 LKDTSGRSVELTLWGD-----FCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTI 334
LKD +++ LWG + N + Q +V +G + GK S K
Sbjct: 174 LKDLGDSLIDVALWGKLAEDVYSNIKSQPSGPVVFLGSLMKTLLYQGKGTVQSSKF---- 229
Query: 335 PSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIH 381
+T+ +IN E + +E + A I +A +K H
Sbjct: 230 -TTKAYINSPLPEILQFQEALCNEEPRLAITEIISSKSAHISKQSFH 275
>gi|294875670|ref|XP_002767428.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239868995|gb|EER00146.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 162
Score = 43.1 bits (100), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 8/80 (10%)
Query: 417 YTACPLMIGD-----RQCNKKVTQ--SGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLT 469
YT+C I D R+C+KKV Q S W C +Q +C RY++ ++ D +G
Sbjct: 48 YTSCITEIPDGRGGIRKCSKKVEQDISTGTWSCIEGHQN-PQCMPRYIISIKLADISGEV 106
Query: 470 WVTAFQESGEEILGCPAKEL 489
V AF E + +LG A+ +
Sbjct: 107 MVRAFDEQAQALLGVSAQNM 126
>gi|448627026|ref|ZP_21671701.1| replication factor A [Haloarcula vallismortis ATCC 29715]
gi|445759654|gb|EMA10930.1| replication factor A [Haloarcula vallismortis ATCC 29715]
Length = 490
Score = 43.1 bits (100), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 81/191 (42%), Gaps = 20/191 (10%)
Query: 112 PARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARG-DGKVFSFDLLDSDGGEIRVTCF 170
P I AL Q ++ V +R ++ G +G+V + L D + G IRVT +
Sbjct: 159 PGAGSSIDALTMGQSDVTLRGLVLDTDTIRTFDRDDGSEGRVSNLTLGD-ETGRIRVTLW 217
Query: 171 NAVVDRFYEIIEVGRVYLISKGSLKPAQKNFN-HLKNEWEIFLEATSTVDLCTEEDDSIP 229
+ DR E+ + G I G ++ + H+ ++ + D E D+ P
Sbjct: 218 DDRADRAEEL-DSGAAVEIIDGYVRERDGSLELHVGDQGAV----DEVEDDVAFEPDADP 272
Query: 230 KQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVE 289
+ + VD+ G+V S +P R +G E Q R + ++D +G +
Sbjct: 273 IAEVALEET-----------VDIAGVVRSADPKRTFDRDDGSEGQVRNVRIQDATG-DIR 320
Query: 290 LTLWGDFCNKE 300
+ LWGD +K+
Sbjct: 321 VALWGDKADKD 331
>gi|448336089|ref|ZP_21525200.1| replication factor A [Natrinema pallidum DSM 3751]
gi|445630447|gb|ELY83712.1| replication factor A [Natrinema pallidum DSM 3751]
Length = 488
Score = 43.1 bits (100), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 20/161 (12%)
Query: 140 LRRYNNARG-DGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQ 198
+R ++ G +GKV + L DS G +RVT ++ D E+ E G + G +K
Sbjct: 186 VRTFDRDDGSEGKVSNLVLGDS-TGRVRVTLWDEQADLATEL-EAGTTVEVIDGYVKDRD 243
Query: 199 KNFN-HLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVI 257
+ H+ N A +D E +P+ + IE E + +VD+ G+V
Sbjct: 244 GSLELHVGNRG-----AVEEIDATVE---YVPEN-------TPIEDVEIDHVVDIAGVVR 288
Query: 258 SVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCN 298
S +P R +G E Q R + ++D + + + LWGD +
Sbjct: 289 SADPKRTFDRDDGSEGQVRNIRVQDAT-DDIRVALWGDKAD 328
>gi|413916479|gb|AFW56411.1| hypothetical protein ZEAMMB73_865574 [Zea mays]
Length = 202
Score = 43.1 bits (100), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 7/128 (5%)
Query: 174 VDRFYEIIEVGRVYLIS--KGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQ 231
V F ++ VY + K SL P + NF HL E+ L+ + V+ T P
Sbjct: 5 VKHFNNLLHEKHVYKMHNVKFSLHPGEFNFCHLNGPMELCLDQQTIVEPYTVPIQMAPFP 64
Query: 232 QFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELT 291
+ ++++I N ++VD++ IV+ ++ + + R+I+ + D G +
Sbjct: 65 KQILLNLADIAELPNRTLVDIMAIVVHLD----TIHRTMWGPFRKIV-IMDARGYLHIIK 119
Query: 292 LWGDFCNK 299
+WGD NK
Sbjct: 120 VWGDLLNK 127
>gi|402223359|gb|EJU03423.1| hypothetical protein DACRYDRAFT_105585 [Dacryopinax sp. DJM-731
SS1]
Length = 470
Score = 42.7 bits (99), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 126/308 (40%), Gaps = 43/308 (13%)
Query: 157 LLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATS 216
LLD EI + F A R + IE V + A + F + +++++ LE +
Sbjct: 179 LLDLTA-EILIIAFGAQTFRIHIQIECTHV--------QEAAEGFRQVPHKFQLILEEHA 229
Query: 217 TVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISV------NPSVPILRKNG 270
+ D SIP+ +FR ++ IE I+DV+ +V+ V P+ + G
Sbjct: 230 VI--MEIHDPSIPRIFLTFRCLNTIERLRVYEIIDVLAVVVCVGRVMKGGPAKTGRVEQG 287
Query: 271 ME---TQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFS 327
++ T R + L D S ++ L ++ F N Q + V+ +KS V+
Sbjct: 288 LQVTYTSHRDVWLVDNSKVAIRLCMFDLFQNIFKQAENK--------VIGIKSVVVDMLD 339
Query: 328 GKSIGTIPSTQLFINPDFAEAHE-LREWF-DSGGKNAATVSISREIAAGGAKNEI----- 380
+ T F+ D +E L EW+ D+ K T++ S A G K++I
Sbjct: 340 RPCLKTQKGCTQFVFQDGNPGYERLMEWYKDADPKEWRTITGSFS-ADGFPKSDITIPNE 398
Query: 381 HKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKV-TQS-GN 438
+ ++ LG + K + + + D + Y C CNKK TQ GN
Sbjct: 399 TIMIKVAQDAKLGLTSKKTFKVITKVLVKNYKD-YLYKGCLY----EDCNKKTPTQKIGN 453
Query: 439 RWQCDRCN 446
+ C C+
Sbjct: 454 VFVCPMCD 461
>gi|392889706|ref|NP_494734.3| Protein R03H10.7 [Caenorhabditis elegans]
gi|351062334|emb|CCD70304.1| Protein R03H10.7 [Caenorhabditis elegans]
Length = 359
Score = 42.7 bits (99), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 54/256 (21%), Positives = 106/256 (41%), Gaps = 14/256 (5%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
+ PI L + I RVT D R ++ + K F+F++ D +G I + +
Sbjct: 114 VTPIENLKESVNYFKIHGRVTLM-DTRPPHHYQ---KRFNFEITDFNGDTIACSASSPEA 169
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
D FY+ + + Y ++ G +K + +N +++I L + ++ ++PK F+
Sbjct: 170 DVFYQNLVKEQSYYLAGGHIKKGHEIYNQTGIDYQIDLNNFTIMEPAPTL-LTLPK--FN 226
Query: 235 FRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWG 294
+ + + A +DV+ + +R + + D S + T WG
Sbjct: 227 IQRVFLSDVANVKKPIDVLVCIKEFKDVENYTPTENKPPHKRHIQVIDDSKSEIRATFWG 286
Query: 295 DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTI-PSTQLFINPDFAEAHELRE 353
N +E ++ V++ K + +G+ +I P T++ I P+ A L
Sbjct: 287 --YNAVDAIREEFLN----KVVAFKGVIPTEGNGQLFLSITPGTRIVIQPEVDGAAYLEA 340
Query: 354 WFDSGGKNAATVSISR 369
WFD A +IS+
Sbjct: 341 WFDGYNARGAITTISQ 356
>gi|357441937|ref|XP_003591246.1| Replication protein A 70 kDa DNA-binding subunit [Medicago
truncatula]
gi|355480294|gb|AES61497.1| Replication protein A 70 kDa DNA-binding subunit [Medicago
truncatula]
Length = 524
Score = 42.7 bits (99), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 77/350 (22%), Positives = 144/350 (41%), Gaps = 41/350 (11%)
Query: 157 LLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATS 216
L+D+ GG I T +V RF ++E G Y + + + + ++ ++ + S
Sbjct: 46 LVDAKGGRIHATVRKDLVARFRSMVEEGATYELHNAIVAINEGPYKITSHKHKLGMLHNS 105
Query: 217 TVDLCTEED-DSIPKQQFSFRHISEIESAE-NNSIVDVIGIVISVNPSVPILRKNGMETQ 274
+ T++D +IP F F +EI S+ + DVIG VI V G +++
Sbjct: 106 SF---TKKDLPTIPINVFDFMSFNEILSSNVEETSADVIGHVIE-RGDVKETENEGRKSK 161
Query: 275 RRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFF--------PVLSVKSGKVNDF 326
L L+D + +LWG+ +K V FF VL ++ K +
Sbjct: 162 VIDLTLQDLENNRLHCSLWGEHADK---------IVSFFVNHDNSSPVVLILQFCKTRKY 212
Query: 327 SGKSIGTIPS---TQLFINPDFAEAHELREWFDSGGKNA--ATVSISR-EIAAGGAKNEI 380
G ++G + + T+L +N D E+ + K + T S+S+ I + + ++
Sbjct: 213 LG-AMGIVNAFYGTKLILNGDLP---EVATYIARMKKTSLQLTQSVSQISINSSASLSDD 268
Query: 381 HKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSD-SFCYTACPLMIGDRQCNKKVTQSGNR 439
++ E + S + +V A I I+++ + + +C QC VT
Sbjct: 269 LLNTKRMTIESMIESTQVCQGSVLATICEIETEVDWYFRSCT------QCATLVTVDNGM 322
Query: 440 WQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKEL 489
+C +C + R+ L + D TG T F + +G ++L
Sbjct: 323 LRCRKC-KTCKSAVPRFKLHVIVMDDTGSTTFVLFDRQVTQFIGRNVQDL 371
>gi|357451089|ref|XP_003595821.1| Replication factor A protein [Medicago truncatula]
gi|124360115|gb|ABN08131.1| Nucleic acid-binding, OB-fold, subgroup [Medicago truncatula]
gi|355484869|gb|AES66072.1| Replication factor A protein [Medicago truncatula]
Length = 185
Score = 42.7 bits (99), Expect = 0.50, Method: Composition-based stats.
Identities = 32/145 (22%), Positives = 76/145 (52%), Gaps = 6/145 (4%)
Query: 157 LLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATS 216
L+D+ G +I T ++ +F + ++ G+VY +S + ++ K+E+++ + +
Sbjct: 3 LMDASGNKIHATVRRTLIYKFEKDLQEGKVYSMSGFGVAANLGSYRTTKHEYKLNFQFNT 62
Query: 217 TVDLCTEEDDSIPKQQFSFRHISEIESAENNS--IVDVIGIVISVNPSVPILRKNGMETQ 274
V LC + +S+P + + + ++E ++ +VDV+G++ V R NG +T+
Sbjct: 63 KVKLCGK--NSVPDDIYPISNSIVVFNSEYDTDYLVDVMGMLTGVGMQREYER-NGAKTK 119
Query: 275 RRILNLKDTSGRSVELTLWGDFCNK 299
+ L + G ++TL+G + ++
Sbjct: 120 MVAMKL-NYDGFKFKVTLFGQYADE 143
>gi|312136409|ref|YP_004003746.1| nucleic acid binding ob-fold tRNA/helicase-type [Methanothermus
fervidus DSM 2088]
gi|311224128|gb|ADP76984.1| nucleic acid binding OB-fold tRNA/helicase-type [Methanothermus
fervidus DSM 2088]
Length = 791
Score = 42.7 bits (99), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 102/235 (43%), Gaps = 27/235 (11%)
Query: 114 RIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAV 173
+ I I + Q + R+ +R Y +GK+ + L D D GEIR +N
Sbjct: 183 KFIKIGEITGDQSEVNVMGRIVHISPIRTYKRDGKEGKMAAIKLKD-DSGEIRYLLWNRD 241
Query: 174 VDRFYEI-IEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQ 232
VD ++ ++ G I ++ + + EI+L + + + D +PK +
Sbjct: 242 VDIINDLKLKEGDAVKILGAQVR---------ERDDEIYL-SHGGLSRIEKGDYDVPKFK 291
Query: 233 FSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTL 292
I E+ E + V VIG+V V V R +G + + + +KD +G S + L
Sbjct: 292 PKVHKIGELHGEERD--VTVIGLVTKVQDIVKFERPDGTKGAVKSIKIKDDTG-STYVKL 348
Query: 293 WGDFCNKEGQKLQEMVDVGFFPVLSVKSGKV--NDF-SGKSIGTIPSTQLFINPD 344
WG E KL+ + V+ V G V +DF S I T +T++ INP+
Sbjct: 349 WG-----EDAKLK----INKGDVIKVVGGNVVFDDFTSSYCINTNWNTRIEINPE 394
>gi|399575764|ref|ZP_10769522.1| single-stranded DNA-binding protein [Halogranum salarium B-1]
gi|399240032|gb|EJN60958.1| single-stranded DNA-binding protein [Halogranum salarium B-1]
Length = 492
Score = 42.4 bits (98), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 86/199 (43%), Gaps = 26/199 (13%)
Query: 111 APARIIPIAALNPYQ--------GRWAIKARVTAKGDLRRYNNARG-DGKVFSFDLLDSD 161
AP + + L+ Y+ +K +V ++R ++ G +G+V + + D +
Sbjct: 151 APGEDVDVQVLDTYRVEDLSLGLSDVNLKGKVLDTSEIRTFDRDDGSEGRVANLTVGD-E 209
Query: 162 GGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLC 221
G +RVT ++ DR E+ G + G ++ + E+ + + V+
Sbjct: 210 TGRVRVTLWDEQADRADELA-TGVTVEVVDGYVRERDGSL-------ELHVGSRGAVEEL 261
Query: 222 TEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLK 281
EE +P ++IE E VD+ G VI +P R +G + Q R + +K
Sbjct: 262 DEEVQYVP-------DTADIEDLEIGQTVDIAGGVIETDPKRTFDRDDGSQGQVRNIRVK 314
Query: 282 DTSGRSVELTLWGDFCNKE 300
D +G + + LWG+ + +
Sbjct: 315 DDTGE-IRVALWGEKADTD 332
>gi|448307001|ref|ZP_21496902.1| replication factor A [Natronorubrum bangense JCM 10635]
gi|445596548|gb|ELY50633.1| replication factor A [Natronorubrum bangense JCM 10635]
Length = 483
Score = 42.4 bits (98), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 20/165 (12%)
Query: 138 GDLRRYNNARG-DGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKP 196
G +R ++ G +GKV + L DS G +RVT ++ D EI V +I G +K
Sbjct: 184 GSVRTFDRDDGSEGKVSNLTLGDSTG-RVRVTLWDEQADLATEIESNTTVEVI-DGYVKE 241
Query: 197 AQKNFN-HLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGI 255
+ H+ N V+ E+ + +P+ + IE+ E VD+ G+
Sbjct: 242 RDGSLELHVGNR--------GAVEEVDEDVEYVPES-------TPIEAVEIGQTVDIAGV 286
Query: 256 VISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKE 300
V S +P R +G E Q R + ++D +G + + LWG+ + +
Sbjct: 287 VRSADPKRTFDRDDGSEGQVRNIRVQDATG-DIRVALWGEKADHD 330
>gi|313799088|gb|ADR82154.1| DNA-directed RNA polymerase subunit beta [Mycoplasma sp. 1220]
Length = 1345
Score = 42.4 bits (98), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 292 LWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHEL 351
+W D+ NK + L ++ D+GFF S KSG S + T+PST+ I A++L
Sbjct: 799 VWFDYTNKVAKILDKIKDLGFF--YSTKSGTT--ISMNDVTTVPSTKEKIKDGEIYANQL 854
Query: 352 REWFDSG 358
+E+F+ G
Sbjct: 855 KEYFEKG 861
>gi|115481338|ref|NP_001064262.1| Os10g0186800 [Oryza sativa Japonica Group]
gi|113638871|dbj|BAF26176.1| Os10g0186800 [Oryza sativa Japonica Group]
Length = 343
Score = 42.4 bits (98), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 53/237 (22%), Positives = 98/237 (41%), Gaps = 18/237 (7%)
Query: 125 QGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVG 184
+G W++ RV K + R+ +R K + LLD G ++ ++ VDR ++ G
Sbjct: 114 RGSWSLGVRVYHKYHVERFAPSR---KRLNLVLLDEQGTKMVAIIYDDQVDRLDPLLREG 170
Query: 185 RVYLISKGSLKPAQKNFNHLKNEWE---IFLEATSTVDLCTEEDDSIPKQQFSFRHISEI 241
Y +S+ S++PA+ + +F T+ ++ + +P
Sbjct: 171 SAYYVSRMSIEPARMILYQWLADHAFVCVFTRDTTITEIANMHEKILPLLPPLMPLDQVF 230
Query: 242 ESAENNSI-VDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELT----LWGDF 296
E +N I VDVIG+VI V+ S+ + R + + D S + V L + D
Sbjct: 231 EFTYHNDIYVDVIGMVIFVS-SIGFVEGYKKRIPYRNILIIDGSFKPVMLVIKDKMLTDH 289
Query: 297 CNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELRE 353
K + E P++ + S+ T +++ +P+ A A ELR+
Sbjct: 290 LTKWARCSNEQ------PIIVATMLRAKREEDHSLHTTCFSRVQFDPNVAVARELRK 340
>gi|391326905|ref|XP_003737950.1| PREDICTED: replication factor A protein 1-like [Metaseiulus
occidentalis]
Length = 129
Score = 42.4 bits (98), Expect = 0.69, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 9/121 (7%)
Query: 240 EIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNK 299
E+ + N+ VD++ +V V P ++G+ ++ + + D S + V L LW +F K
Sbjct: 2 ELLTKPVNTTVDILVVVFDVRPPQTFNCRDGINRVKQTVTVLDDSMKMVNLGLWSEFVGK 61
Query: 300 EGQKLQEMVDVGFFPVLSVKSGKVNDFSG-KSIGTIPSTQLFINPDFAEAHELREWFDSG 358
K E V +++ +V D++G + + T +T + A+A LR+WF
Sbjct: 62 LDGKEGEAV--------ILQNLQVRDYNGTRQLSTTTNTIIREAAGDADAERLRQWFKVD 113
Query: 359 G 359
G
Sbjct: 114 G 114
>gi|388496496|gb|AFK36314.1| unknown [Lotus japonicus]
Length = 242
Score = 42.4 bits (98), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 94/200 (47%), Gaps = 16/200 (8%)
Query: 157 LLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATS 216
L+DS G +I + +V RF+ ++ GRVY IS + +F ++++I +
Sbjct: 46 LMDSKGCQIHASVRKTLVYRFHPLLTEGRVYQISYFGVGDNLGDFRTTTHQFKINFHIHT 105
Query: 217 TVDLCTEEDDSIP--KQQFSFRHISEI--ESAENNSIVDVIGIVISVNPSVPILRKNGME 272
V +E + P K +SF +SEI + + ++D+IGI+ + K+G +
Sbjct: 106 KV----KEIGNCPITKSPYSFISLSEIMFNDPDPSYLMDIIGILTGSSGEQE-YEKDG-K 159
Query: 273 TQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFF-PVLSVKSGKVNDFSGK-S 330
Q+R+ G +E +G++ GQ L ++ V+ V+ K+ F G+ S
Sbjct: 160 IQKRVTIELFQDGVRLECAFFGNYV---GQILGQLAAGDMTNAVVVVQYAKIKPFRGRPS 216
Query: 331 IGTI-PSTQLFINPDFAEAH 349
+ + +T++ NPD +
Sbjct: 217 VQNVYGATKILFNPDVQNVY 236
>gi|357146217|ref|XP_003573915.1| PREDICTED: uncharacterized protein LOC100821223 [Brachypodium
distachyon]
Length = 234
Score = 42.4 bits (98), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 66/139 (47%), Gaps = 9/139 (6%)
Query: 127 RWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRV 186
RW++ RV K + R + R K +F LLD++G ++ T ++ VDR +++ G
Sbjct: 22 RWSLCLRVYHKFHVERIGHGR---KRVNFVLLDAEGTKMAATIYDDQVDRLDPLLKEGIA 78
Query: 187 YLISKGSLKPAQKNFNHL--KNEWEI-FLEATSTVDLCTEEDDSIPKQQFSFRHISEI-- 241
Y +S S++P + N +E F T ++ + +IP F I
Sbjct: 79 YYVSMMSVEPISSTQRRMFADNPYECHFTSVTQVFEMRNMGEGTIPFFP-PFLPCDRIFP 137
Query: 242 ESAENNSIVDVIGIVISVN 260
+ N+ VDVIG+V+ V+
Sbjct: 138 STLYNDIYVDVIGMVLYVS 156
>gi|335440024|ref|ZP_08561748.1| replication factor A [Halorhabdus tiamatea SARL4B]
gi|334889192|gb|EGM27482.1| replication factor A [Halorhabdus tiamatea SARL4B]
Length = 492
Score = 42.4 bits (98), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 75/164 (45%), Gaps = 21/164 (12%)
Query: 140 LRRYNNARG-DGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQ 198
+R ++ G +G+V + + D G +RVT ++ DR EI + G + G ++ +
Sbjct: 187 VRTFDRDDGSEGRVANLSIGDE-TGRVRVTLWDERADRVEEI-DAGATVEVVDGYVRERE 244
Query: 199 KNFN-HLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFR-HISEIESAENNSIVDVIGIV 256
+ H+ E I D + ++ + I+ E + VD+ G+V
Sbjct: 245 GDLEVHVGEEGAI---------------DELEDGDVAYAPETTPIDDVELDETVDIGGVV 289
Query: 257 ISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKE 300
S +P+ R +G E Q + + ++D +G + + LWG+ +++
Sbjct: 290 RSTDPTRTFDRDDGSEGQVKNIRIQDDTG-DIRVALWGEKADRD 332
>gi|168040971|ref|XP_001772966.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675699|gb|EDQ62191.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 185
Score = 42.4 bits (98), Expect = 0.72, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 34 PQPVRVNNYSAPNSGTFNLQNSGTFNSQNPGSFSTPNSGTFRAPNAG 80
P+P + PN+G N+G + N G PN+G APNAG
Sbjct: 21 PKPDVLGALDTPNAGVLEAPNAGVLEAPNAGVLEAPNAGVLEAPNAG 67
Score = 40.8 bits (94), Expect = 2.1, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 44 APNSGTFNLQNSGTFNSQNPGSFSTPNSGTFRAPNAG 80
APN+G N+G + N G PN+G APNAG
Sbjct: 39 APNAGVLEAPNAGVLEAPNAGVLEAPNAGVLEAPNAG 75
Score = 40.8 bits (94), Expect = 2.1, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 44 APNSGTFNLQNSGTFNSQNPGSFSTPNSGTFRAPNAG 80
APN+G N+G + N G PN+G APNAG
Sbjct: 47 APNAGVLEAPNAGVLEAPNAGVLEAPNAGVLEAPNAG 83
Score = 40.8 bits (94), Expect = 2.1, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 44 APNSGTFNLQNSGTFNSQNPGSFSTPNSGTFRAPNAG 80
APN+G N+G + N G PN+G APNAG
Sbjct: 55 APNAGVLEAPNAGVLEAPNAGVLEAPNAGVLEAPNAG 91
Score = 40.8 bits (94), Expect = 2.1, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 44 APNSGTFNLQNSGTFNSQNPGSFSTPNSGTFRAPNAG 80
APN+G N+G + N G PN+G APNAG
Sbjct: 63 APNAGVLEAPNAGVLEAPNAGVLEAPNAGVLEAPNAG 99
Score = 40.8 bits (94), Expect = 2.1, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 44 APNSGTFNLQNSGTFNSQNPGSFSTPNSGTFRAPNAG 80
APN+G N+G + N G PN+G APNAG
Sbjct: 71 APNAGVLEAPNAGVLEAPNAGVLEAPNAGVLEAPNAG 107
Score = 40.8 bits (94), Expect = 2.1, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 44 APNSGTFNLQNSGTFNSQNPGSFSTPNSGTFRAPNAG 80
APN+G N+G + N G PN+G APNAG
Sbjct: 79 APNAGVLEAPNAGVLEAPNAGVLEAPNAGVLEAPNAG 115
Score = 40.8 bits (94), Expect = 2.1, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 44 APNSGTFNLQNSGTFNSQNPGSFSTPNSGTFRAPNAG 80
APN+G N+G + N G PN+G APNAG
Sbjct: 87 APNAGVLEAPNAGVLEAPNAGVLEAPNAGVLEAPNAG 123
Score = 40.8 bits (94), Expect = 2.1, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 44 APNSGTFNLQNSGTFNSQNPGSFSTPNSGTFRAPNAG 80
APN+G N+G + N G PN+G APNAG
Sbjct: 95 APNAGVLEAPNAGVLEAPNAGVLEAPNAGVLEAPNAG 131
Score = 40.8 bits (94), Expect = 2.1, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 44 APNSGTFNLQNSGTFNSQNPGSFSTPNSGTFRAPNAG 80
APN+G N+G + N G PN+G APNAG
Sbjct: 103 APNAGVLEAPNAGVLEAPNAGVLEAPNAGVLEAPNAG 139
Score = 40.8 bits (94), Expect = 2.1, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 44 APNSGTFNLQNSGTFNSQNPGSFSTPNSGTFRAPNAG 80
APN+G N+G + N G PN+G APNAG
Sbjct: 111 APNAGVLEAPNAGVLEAPNAGVLEAPNAGVLEAPNAG 147
Score = 40.8 bits (94), Expect = 2.1, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 44 APNSGTFNLQNSGTFNSQNPGSFSTPNSGTFRAPNAG 80
APN+G N+G + N G PN+G APNAG
Sbjct: 119 APNAGVLEAPNAGVLEAPNAGVLEAPNAGVLEAPNAG 155
Score = 40.8 bits (94), Expect = 2.1, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 44 APNSGTFNLQNSGTFNSQNPGSFSTPNSGTFRAPNAG 80
APN+G N+G + N G PN+G APNAG
Sbjct: 127 APNAGVLEAPNAGVLEAPNAGVLEAPNAGVLEAPNAG 163
Score = 40.8 bits (94), Expect = 2.1, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 44 APNSGTFNLQNSGTFNSQNPGSFSTPNSGTFRAPNAG 80
APN+G N+G + N G PN+G APNAG
Sbjct: 135 APNAGVLEAPNAGVLEAPNAGVLEAPNAGVLEAPNAG 171
Score = 40.8 bits (94), Expect = 2.1, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 44 APNSGTFNLQNSGTFNSQNPGSFSTPNSGTFRAPNAG 80
APN+G N+G + N G PN+G APNAG
Sbjct: 143 APNAGVLEAPNAGVLEAPNAGVLEAPNAGVLEAPNAG 179
>gi|115437564|ref|NP_001043325.1| Os01g0556600 [Oryza sativa Japonica Group]
gi|113532856|dbj|BAF05239.1| Os01g0556600 [Oryza sativa Japonica Group]
Length = 1932
Score = 42.4 bits (98), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 65/351 (18%), Positives = 129/351 (36%), Gaps = 20/351 (5%)
Query: 148 GDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNE 207
GD + L+ G I + +F +I G+VYL++ +KP K++ + N+
Sbjct: 1204 GDLRHIGLVLVGEKGYAIAAMIYPPWGKKFKPLISEGKVYLLTYYRVKPCTKHYRPVDNK 1263
Query: 208 WEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESA--ENNSIVDVIGIVISVNPSVPI 265
I + ++ + ++ E+ S +S DVIG++ ++ +
Sbjct: 1264 MMINFTRWTGIEEYVDVQAGFGHYAYTLTPYQELRSRVDRKDSFTDVIGVITDISSVTTV 1323
Query: 266 -LRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGF-FPVLSVKSGKV 323
R ++ +R + +++ + + LWG+ E++ G P + + G +
Sbjct: 1324 RTRVRDSDSLKRNVYMRNAENETTNIVLWGE--RATSFPADEILSAGKEKPQIVIFVGTL 1381
Query: 324 NDFSGKSIGTIPSTQLFINPDFA--EAHELREWFDSGGKNAATVSISREIAAGGAKNEIH 381
G + T + N + A + E G A I A N
Sbjct: 1382 VRGHGSVVLIAWDTVVIGNVSLSGNSACKCVE-----GNYEAIKWIDLPAAPILQNNCEQ 1436
Query: 382 KTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQ 441
KT+++I++ + +K ++ S+ YTAC + C K GN ++
Sbjct: 1437 KTIAEIRDPHPFKFKKHEFSVTVVIKKLNMEYSWWYTACDI------CKKTAKPYGNLYR 1490
Query: 442 CDRCN-QEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYM 491
C R+ L D TG T F + ++G + L +
Sbjct: 1491 CGNSTCPPTGSASPRFKLSVIAGDDTGDTTFIIFGHLAQRLIGRSVEALML 1541
>gi|443897150|dbj|GAC74492.1| invasion-inducing protein TIAM1/CDC24 [Pseudozyma antarctica T-34]
Length = 2242
Score = 42.4 bits (98), Expect = 0.74, Method: Composition-based stats.
Identities = 37/125 (29%), Positives = 55/125 (44%), Gaps = 16/125 (12%)
Query: 18 SESELTAQKTIPSNNLPQPVRVNNYSAPNSGTFNLQNSGTFNSQNPGSFSTPNSGTFRAP 77
+E+ A + +++ PV +P S +L N G PG FSTP T R P
Sbjct: 1094 AEAAAHASRQASGSSVTSPVAYAEGVSPGSSVADLANGGAHEPHTPGGFSTPGYAT-RLP 1152
Query: 78 NAGSIVRSFQPT--------VQPPYQ-PPPNFRN-HGPILKNEAPARI-----IPIAALN 122
++GS+VRS + +Q Q P F N +G L +P+ + IP L+
Sbjct: 1153 SSGSLVRSASSSGSTARDYMLQGSNQLLTPQFMNTNGTALLARSPSFVKPSWSIPQDGLS 1212
Query: 123 PYQGR 127
P Q R
Sbjct: 1213 PTQKR 1217
>gi|357464609|ref|XP_003602586.1| hypothetical protein MTR_3g095950 [Medicago truncatula]
gi|355491634|gb|AES72837.1| hypothetical protein MTR_3g095950 [Medicago truncatula]
Length = 203
Score = 42.0 bits (97), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 70/146 (47%), Gaps = 9/146 (6%)
Query: 118 IAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDL--LDSDGGEIRVTCFNAVVD 175
I+ ++P + W + RV + Y N + FS +L +D G I + ++
Sbjct: 8 ISNVSPRKQSWTLVVRVVRAWFGQDYKNKKLP---FSMELVLIDRKGDRIGASIRRTLIY 64
Query: 176 RFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSF 235
+F ++ G V+ IS ++ ++ +NE+++ + V L + +P +SF
Sbjct: 65 KFKNQLQEGMVFTISSFNVASNIGSYRPSRNEYKLNFTINTKVKLS--KTVLVPTNVYSF 122
Query: 236 RHISEI--ESAENNSIVDVIGIVISV 259
++ ES +NN +VDVIG++I V
Sbjct: 123 TPAPDVFNESYDNNYLVDVIGVMIGV 148
>gi|413915875|gb|AFW55807.1| hypothetical protein ZEAMMB73_980277 [Zea mays]
Length = 343
Score = 42.0 bits (97), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 65/138 (47%), Gaps = 10/138 (7%)
Query: 127 RWAIKARVTAKGDLR-RYNNARGDGKVFSFDLLDSDGGEIR-VTCFNAVVDRFYEIIEVG 184
+++I ARV K + R+ + + F L D +G +I +T V F ++
Sbjct: 181 KYSIVARVEVKFPIEPRFRDRQ------HFVLSDINGAKIEAITYMYETVKHFDNLLHEK 234
Query: 185 RVYLIS--KGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIE 242
VY + K SL P + NF HL E+ L+ + V+ T P + ++++I
Sbjct: 235 HVYKMHNVKFSLHPGEFNFRHLNGPMELCLDQQTIVEPYTVPIQMAPFPKQILLNLADIA 294
Query: 243 SAENNSIVDVIGIVISVN 260
N ++VD++ +V+ ++
Sbjct: 295 ELLNRTLVDIMAVVVHLD 312
>gi|448347285|ref|ZP_21536161.1| replication factor A [Natrinema altunense JCM 12890]
gi|445631035|gb|ELY84282.1| replication factor A [Natrinema altunense JCM 12890]
Length = 476
Score = 42.0 bits (97), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 74/161 (45%), Gaps = 20/161 (12%)
Query: 140 LRRYNNARG-DGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQ 198
+R ++ G +GKV + L DS G +RVT ++ D E+ E G + G +K
Sbjct: 186 VRTFDRDDGSEGKVSNLVLGDS-TGRVRVTLWDEQADLATEL-EAGTTVEVIDGYVKDRD 243
Query: 199 KNFN-HLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVI 257
+ H+ N + E +TV+ E + P IE E + +VD+ G+V
Sbjct: 244 GSLELHVGNRGTVE-EIDATVEYVPE---NTP-----------IEDVEIDQVVDLAGVVR 288
Query: 258 SVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCN 298
S +P R +G E Q R + ++D + + + LWGD +
Sbjct: 289 SADPKRTFDRDDGSEGQVRNIRVQDAT-DDIRVALWGDKAD 328
>gi|413939633|gb|AFW74184.1| hypothetical protein ZEAMMB73_040811 [Zea mays]
Length = 202
Score = 42.0 bits (97), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 59/132 (44%), Gaps = 7/132 (5%)
Query: 174 VDRFYEIIEVGRVYLIS--KGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQ 231
V F ++ VY + K SL P + NF HL E+ L+ + V+ T P
Sbjct: 5 VKHFDNLLHEKHVYKMHNVKFSLHPGEFNFRHLNGPMELCLDQQTIVEPYTVPIQMAPFP 64
Query: 232 QFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELT 291
+ ++ +I N ++VD++ +V+ ++ + + R+I+ + D G +
Sbjct: 65 KQILLNLVDIAELPNRTLVDIMAVVVHLD----TIHRTMWGPFRKIV-IMDARGYLHIIK 119
Query: 292 LWGDFCNKEGQK 303
+WGD NK +
Sbjct: 120 VWGDLLNKNALR 131
>gi|413933865|gb|AFW68416.1| hypothetical protein ZEAMMB73_453988 [Zea mays]
gi|413946436|gb|AFW79085.1| hypothetical protein ZEAMMB73_648496 [Zea mays]
Length = 199
Score = 42.0 bits (97), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 65/138 (47%), Gaps = 10/138 (7%)
Query: 127 RWAIKARVTAKGDLR-RYNNARGDGKVFSFDLLDSDGGEIR-VTCFNAVVDRFYEIIEVG 184
+++I ARV K + R+ + + F L D +G +I +T V F ++
Sbjct: 37 KYSIVARVEVKFPIEPRFRDRQ------HFVLSDINGAKIEAITYMYETVKHFDNLLHEK 90
Query: 185 RVYLIS--KGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIE 242
VY + K SL P + NF HL E+ L+ + V+ T P + ++++I
Sbjct: 91 HVYKMHNVKFSLHPGEFNFRHLNGPMELCLDQQTIVEPYTVPIQMAPFPKQILLNLADIA 150
Query: 243 SAENNSIVDVIGIVISVN 260
N ++VD++ +V+ ++
Sbjct: 151 ELPNRTLVDIMAVVVHLD 168
>gi|357467297|ref|XP_003603933.1| hypothetical protein MTR_3g116750 [Medicago truncatula]
gi|355492981|gb|AES74184.1| hypothetical protein MTR_3g116750 [Medicago truncatula]
Length = 203
Score = 42.0 bits (97), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 70/146 (47%), Gaps = 9/146 (6%)
Query: 118 IAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDL--LDSDGGEIRVTCFNAVVD 175
I+ ++P + W + RV + Y N + FS +L +D G I + ++
Sbjct: 8 ISNVSPRKQSWTLVVRVARAWFGQDYKNKKLP---FSMELVLIDRKGDRIGASIRRTLIY 64
Query: 176 RFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSF 235
+F ++ G V+ IS ++ ++ +NE+++ + V L + +P +SF
Sbjct: 65 KFKNQLQEGMVFTISSFNVASNIGSYRPSRNEYKLNFTINTKVKLS--KTVLVPTNVYSF 122
Query: 236 RHISEI--ESAENNSIVDVIGIVISV 259
++ ES +NN +VDVIG++I V
Sbjct: 123 TPAPDVFNESYDNNYLVDVIGVMIGV 148
>gi|301625871|ref|XP_002942126.1| PREDICTED: hypothetical protein LOC100498385 [Xenopus (Silurana)
tropicalis]
Length = 1047
Score = 42.0 bits (97), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 17/131 (12%)
Query: 403 VRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQI 462
+RA + + S Y AC + C ++ ++ NR++C RC + E RY L ++
Sbjct: 213 LRASVLSVLGSSCTYPAC------QHCFTRLIRAANRFECPRCGSQSKEAKQRYKLCLKV 266
Query: 463 QDQTGLTWVTAFQESGEEILGCPAKELY-MLKYELQDDVRFGEIIRSRVFNQ-------- 513
+ + L +T F ++I G A L L+ +Q + NQ
Sbjct: 267 AEWSQLYIITVFGSCLDKIFGTSASALQRQLQCSVQTWSNLASDRAQELLNQAVEQCFVG 326
Query: 514 --YLFRLKIKE 522
+LF +KI E
Sbjct: 327 RNFLFGVKIPE 337
>gi|414592133|tpg|DAA42704.1| TPA: hypothetical protein ZEAMMB73_913503 [Zea mays]
Length = 201
Score = 42.0 bits (97), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
Query: 191 KGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIV 250
K SL P + NF HL E+ L+ + V+ T P + ++++I N ++V
Sbjct: 23 KFSLHPGEFNFRHLNGPMELCLDQQTIVEPYTVPIQMAPFPKQILLNLADIAELPNRTLV 82
Query: 251 DVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQK 303
D++ +V+ ++ + + R+I+ + D G + +WGD NK +
Sbjct: 83 DIMAVVVHLD----TIHRTMWGPFRKIV-IMDARGYLHIIKVWGDLLNKNALR 130
>gi|357444707|ref|XP_003592631.1| Replication factor A protein [Medicago truncatula]
gi|355481679|gb|AES62882.1| Replication factor A protein [Medicago truncatula]
Length = 301
Score = 42.0 bits (97), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 96/230 (41%), Gaps = 25/230 (10%)
Query: 157 LLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATS 216
L+D GG I T +V +F +++ G Y + + + + ++ ++ + S
Sbjct: 38 LVDEKGGRIHATARKDLVAKFRSMVQEGGTYQLENAIVGFNESPYKVTSHKHKLKMMHNS 97
Query: 217 TVDLCTEEDDSIPKQQFSFRHISEIESAENNSI-VDVIGIVISVNPSVPILRKNGMETQR 275
T SIP F F+ +EI S+ + DVIG VI + K+G +++
Sbjct: 98 T--FTKVHSPSIPMNVFKFKPFNEILSSTVEEVSTDVIGHVIE-RGDIRETEKDGRKSRV 154
Query: 276 RILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSI---G 332
L L+D + +LWG +K V FF + G N F+G + G
Sbjct: 155 IDLTLEDLENNRLHCSLWGKHADK---------IVTFFGAM----GVANAFNGTKLILNG 201
Query: 333 TIPSTQLFINPDFAEAHEL----REWFDSGGKNAAT-VSISREIAAGGAK 377
+P ++ + + +L R +S ++ V+ISR + GG K
Sbjct: 202 DLPDVAAYMTRSASLSDDLLNTNRMTIESMIESTELYVAISRVTSRGGLK 251
>gi|448476279|ref|ZP_21603443.1| replication factor A [Halorubrum aidingense JCM 13560]
gi|445815828|gb|EMA65747.1| replication factor A [Halorubrum aidingense JCM 13560]
Length = 488
Score = 42.0 bits (97), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 66/143 (46%), Gaps = 26/143 (18%)
Query: 163 GEIRVTCFNA---VVDRFY--EIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATST 217
G +RVT ++ + D F E++EVG Y+ + + E+ + T
Sbjct: 209 GRVRVTLWDDKADLADEFAAGEVVEVGDGYVRER-------------NGDLELHVGDRGT 255
Query: 218 VDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRI 277
V+ E+ + +P+ I+E+E + VD+ G +I +P R +G E Q R
Sbjct: 256 VERVDEDVEYVPETT----DIAELEIGQT---VDIGGGIIETDPKRTFDRDDGSEGQVRN 308
Query: 278 LNLKDTSGRSVELTLWGDFCNKE 300
+ +KD +G + + LWGD + E
Sbjct: 309 VRIKDQTGE-IRVALWGDKADTE 330
>gi|87241182|gb|ABD33040.1| Nucleic acid-binding, OB-fold, subgroup [Medicago truncatula]
Length = 224
Score = 42.0 bits (97), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 69/146 (47%), Gaps = 9/146 (6%)
Query: 118 IAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDL--LDSDGGEIRVTCFNAVVD 175
I+ ++P + W + RV + Y N + FS +L +D G I + ++
Sbjct: 8 ISNVSPRKQSWTLVVRVVRAWFGQNYKNKKLP---FSMELVLIDRKGDRIGASIRRTLIY 64
Query: 176 RFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSF 235
+F ++ G V+ IS ++ ++ +NE+++ + V L + +P +SF
Sbjct: 65 KFKNQLQEGMVFTISSFNVASNIGSYRPSRNEYKLNFTINTKVKL--SKTVLVPTNVYSF 122
Query: 236 RHISEI--ESAENNSIVDVIGIVISV 259
+ ES +NN +VDVIG++I V
Sbjct: 123 TPAPNVFNESYDNNYLVDVIGVMIGV 148
>gi|357509383|ref|XP_003624980.1| hypothetical protein MTR_7g089660 [Medicago truncatula]
gi|355499995|gb|AES81198.1| hypothetical protein MTR_7g089660 [Medicago truncatula]
Length = 236
Score = 41.6 bits (96), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 69/146 (47%), Gaps = 9/146 (6%)
Query: 118 IAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDL--LDSDGGEIRVTCFNAVVD 175
I+ ++P + W + RV + Y N + FS +L +D G I + ++
Sbjct: 8 ISNVSPRKQSWTLVVRVVRAWFGQNYKNKKLP---FSMELVLIDRKGDRIGASIRRTLIY 64
Query: 176 RFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSF 235
+F ++ G V+ IS ++ ++ +NE+++ + V L + +P +SF
Sbjct: 65 KFKNQLQEGMVFTISSFNVASNIGSYRPSRNEYKLNFTINTKVKLS--KTVLVPTNVYSF 122
Query: 236 RHISEI--ESAENNSIVDVIGIVISV 259
+ ES +NN +VDVIG++I V
Sbjct: 123 TPAPNVFNESYDNNYLVDVIGVMIGV 148
>gi|57834063|emb|CAD40309.2| OSJNBb0013O03.4 [Oryza sativa Japonica Group]
Length = 2052
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 67/136 (49%), Gaps = 6/136 (4%)
Query: 157 LLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATS 216
L+D G I F + + F ++ G++Y ++ +KP K + + N++ I L +
Sbjct: 1465 LVDETGNSISAQIFPDINEIFEPLLTEGKIYYLAYYRVKPRNKIYRPVANKFAISLTKWT 1524
Query: 217 TVDLCTEEDDSIPKQQFSFRHISEIESA--ENNSIVDVIGIVISVNP--SVPILRKNGME 272
V+ E S P ++ + +E S + +S +D IG++ + SV +N +
Sbjct: 1525 KVEEYLEPPSSFPSYVYTLKSFNEFPSLVDKKDSFIDTIGVITEITSITSVRSCTRNA-D 1583
Query: 273 TQRRILNLKDTSGRSV 288
+ +R ++++D + RS+
Sbjct: 1584 SLKRNVHMRD-AKRSI 1598
>gi|9279564|dbj|BAB01022.1| replication protein A1-like [Arabidopsis thaliana]
Length = 452
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 69/297 (23%), Positives = 116/297 (39%), Gaps = 32/297 (10%)
Query: 269 NGMETQRRILNLKDTSG-----RSVEL--TLWGDFCNKEGQKLQEMVDVGFFPVLSVKSG 321
N Q RI +LK G R L TLWG + Q QE D G L ++
Sbjct: 85 NPTSGQYRISDLKYKIGFVFKPRDTRLACTLWGKYAEIVDQACQESTD-GIVVCL-IRFA 142
Query: 322 KVNDFSG-KSIG-TIPSTQLFINPDFAEAHELREWFDSGGKN-AATVSISREIAAGGAKN 378
K+N ++ +S+ + +Q+F++ AE ++ + G ++ S + + A +
Sbjct: 143 KINLYNDTRSVSNSFDVSQVFVDHTLAELGLFKQSIPTDGLTLGSSGSFHKRLYAPRTGD 202
Query: 379 EIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGN 438
+ Q E L S+ TV ++ I +D Y C R NKKV +
Sbjct: 203 DDGDYPRQTIKEVLTFSDVGKCKTV-CTVSAIDTDWPWYYFCC-----RAHNKKVVKEEA 256
Query: 439 ------------RWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPA 486
R+ C+ CN ++ L I DQTG F +EILG A
Sbjct: 257 IKFEDVKLPQKPRFWCEICNGFAKSVVPKFWLHLHIMDQTGEAKCMLFDSHAKEILGITA 316
Query: 487 KELYMLKY-ELQDDVRFGEIIRSRVFNQYLFRLKI-KEELYGDEQRVKITVIRADQV 541
+L + E++D ++I + F L + +E ++G + + D +
Sbjct: 317 HDLLAGSFDEIEDPTVLPDVINCLKGKTFQFLLCVQRENIFGGYDSFTVARVYTDNI 373
>gi|413937358|gb|AFW71909.1| hypothetical protein ZEAMMB73_180301 [Zea mays]
Length = 848
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 62/150 (41%), Gaps = 8/150 (5%)
Query: 157 LLDSDGGEIRVTCFN-AVVDRFYEIIEVGRVYLISKG--SLKPAQKNFNHLKNEWEIFLE 213
L D +G +I +V F ++ VY + L P NF HL E++
Sbjct: 35 LSDINGAKIEAIANRYEIVKYFNSLLHEKHVYKMHNVWFGLNPGAFNFRHLNGTMELYFT 94
Query: 214 ATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMET 273
+ V+ P + F ++ +I N ++VD++ IV+ ++ + + T
Sbjct: 95 HQTIVEPYAVPVQMPPFPKHIFLNLDDIAELPNRTLVDIMAIVVHLD----TIHRTMWGT 150
Query: 274 QRRILNLKDTSGRSVELTLWGDFCNKEGQK 303
R+I+ + D + +WGD NK +
Sbjct: 151 FRKIV-IMDARWSLHTIKVWGDLLNKNALR 179
>gi|402220342|gb|EJU00414.1| nucleic acid-binding protein [Dacryopinax sp. DJM-731 SS1]
Length = 209
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 43/111 (38%), Gaps = 8/111 (7%)
Query: 383 TVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQS----GN 438
T++++ EGL + + I K++S Y C + CN+KV S
Sbjct: 20 TIAKVYAEGLNAQPRAQTFCIEGTIVIDKANSVTYLGCAM----PHCNRKVHDSDIGTNM 75
Query: 439 RWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKEL 489
+ C C Q +Y + QI W TAF + +LG P +
Sbjct: 76 HYLCPTCKQSFMMPMPKYCICFQIVSGNDHKWATAFNTASTALLGVPVATM 126
>gi|391331558|ref|XP_003740211.1| PREDICTED: replication factor A protein 1-like [Metaseiulus
occidentalis]
Length = 173
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 180 IIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHIS 239
+I VG+ Y I+ + K N + E E L+ T L + +PK Q +
Sbjct: 1 MITVGQCYKIN--AYKAEAVNPQYRATEHECKLQLTKLSKLVPIAGNDLPKTQAQTTVLI 58
Query: 240 EIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNK 299
E+ S N+ VD++ +V V ++G+ +++ + + D S + V L LW +F K
Sbjct: 59 ELLSKPVNTTVDILVVVFDVRLPQTFNSRDGINREKQTVTVLDDSMKMVNLGLWSEFVGK 118
>gi|342210558|ref|ZP_08703319.1| DNA-directed RNA polymerase subunit beta' [Mycoplasma anatis 1340]
gi|341579404|gb|EGS29433.1| DNA-directed RNA polymerase subunit beta' [Mycoplasma anatis 1340]
Length = 1475
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 292 LWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHEL 351
+W D+ NK + L ++ D+GF S KSG S + T+PST+ I A A++L
Sbjct: 820 VWFDYTNKVAKILDKIKDLGFH--YSTKSGTT--ISMNDVTTVPSTKEKIKDGEAYANKL 875
Query: 352 REWFDSG 358
+E+F+ G
Sbjct: 876 KEYFEKG 882
>gi|413949711|gb|AFW82360.1| hypothetical protein ZEAMMB73_114361 [Zea mays]
Length = 405
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 78/181 (43%), Gaps = 15/181 (8%)
Query: 127 RWAIKARVTAKGDLR-RYNNARGDGKVFSFDLLDSDGGEIR-VTCFNAVVDRFYEIIEVG 184
+++I ARV K + RY + + F L D +G +I +T V F ++
Sbjct: 37 KFSIVARVEVKFPIEPRYRDRK------HFILSDINGAKIEAMTSSYETVKHFNNLLHEK 90
Query: 185 RVYLISK--GSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIE 242
V+ + S+ F H+ E++L + V+ T P + F +++I
Sbjct: 91 HVFKMHNVDFSISMGAHQFRHISGPMELYLTRQTVVEPYTVPFQMPPFPKHIFLSLADIA 150
Query: 243 SAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQ 302
N ++VD++ IV+ ++ I+ + R+I+ + D + +WGD NK
Sbjct: 151 ELPNRTLVDIMAIVVHLD----IIHRTMWGPFRKIV-VMDARWSLHAIKVWGDLLNKNAL 205
Query: 303 K 303
+
Sbjct: 206 R 206
>gi|385305379|gb|EIF49360.1| subunit of heterotrimeric replication protein a [Dekkera
bruxellensis AWRI1499]
Length = 90
Score = 41.6 bits (96), Expect = 1.2, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 471 VTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRV-FNQYLFRLKIKEELYGDEQ 529
+T F + ++G A+EL LK E + D + + FN+Y FR++ + + Y
Sbjct: 1 MTLFDDQARVLVGLSAEELLKLKEESEVDNSLKNYVNEHIAFNEYSFRVRARLDSYNGID 60
Query: 530 RVKITVIRADQVNYSSESRYLLDLISK 556
R + + V+YS+E+ L+D K
Sbjct: 61 RARFNAVGLAPVDYSTEADALVDEFDK 87
>gi|313127408|ref|YP_004037678.1| single-stranded DNA-binding protein [Halogeometricum borinquense
DSM 11551]
gi|448288118|ref|ZP_21479319.1| replication factor A [Halogeometricum borinquense DSM 11551]
gi|312293773|gb|ADQ68233.1| single-stranded DNA-binding protein [Halogeometricum borinquense
DSM 11551]
gi|445570157|gb|ELY24723.1| replication factor A [Halogeometricum borinquense DSM 11551]
Length = 486
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 30/178 (16%)
Query: 130 IKARVTAKGDLRRYNNARG-DGKVFSFDLLDSDGGEIRVTCFNAVVDRFYE-----IIEV 183
+K RV + +R ++ G +G+V + L DS G IRVT ++ D E +EV
Sbjct: 176 LKGRVLSTDSVRTFDRDDGSEGRVANLTLGDS-TGRIRVTLWDDKADLAAEFDTDITVEV 234
Query: 184 GRVYLISK-GSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIE 242
Y+ + GSL+ H+ N T++ E + +P+ ++I
Sbjct: 235 VDGYVRERDGSLEL------HVGNR--------GTLEEIDENVEYVPE-------TADIA 273
Query: 243 SAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKE 300
S E VD+ G VI +P R +G E Q R + +KD +G + + LWG+ + +
Sbjct: 274 SLELGQTVDIAGGVIETDPKRTFDRDDGSEGQVRNIRVKDDTG-DIRVALWGEKADTD 330
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 87/186 (46%), Gaps = 25/186 (13%)
Query: 118 IAALNPYQGRWAIKARVTAKGDLRRY--NNARGDGKVFSFDLLDSDGGEIRVTCFNAVVD 175
IA + P +V + G+LR + ++ DG+V + ++ D + G IR++ ++ + +
Sbjct: 56 IADIEPGMDDVKFLGKVMSIGELRTFERDDEDEDGRVVNVEVAD-ETGRIRISLWDGMAE 114
Query: 176 RFYEIIEVGRVYLIS---KGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQ 232
E +EVG+V I+ K + + N ++ +A + +D+ T+ DS +
Sbjct: 115 EATENLEVGQVLRIAGRPKDGYNGVEVSVNKVEP------DADAEIDVQTQ--DSYRVED 166
Query: 233 FSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTL 292
S S V++ G V+S + R +G E + L L D++GR + +TL
Sbjct: 167 LSL----------GLSDVNLKGRVLSTDSVRTFDRDDGSEGRVANLTLGDSTGR-IRVTL 215
Query: 293 WGDFCN 298
W D +
Sbjct: 216 WDDKAD 221
>gi|297722973|ref|NP_001173850.1| Os04g0300175 [Oryza sativa Japonica Group]
gi|255675301|dbj|BAH92578.1| Os04g0300175 [Oryza sativa Japonica Group]
Length = 1718
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 63/131 (48%), Gaps = 5/131 (3%)
Query: 157 LLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATS 216
L+D G I F + + F ++ G++Y ++ +KP K + + N++ I L +
Sbjct: 1444 LVDETGNSISAQIFPDINEIFEPLLTEGKIYYLAYYRVKPRNKIYRPVANKFAISLTKWT 1503
Query: 217 TVDLCTEEDDSIPKQQFSFRHISEIESA--ENNSIVDVIGIVISVNP--SVPILRKNGME 272
V+ E S P ++ + +E S + +S +D IG++ + SV +N +
Sbjct: 1504 KVEEYLEPPSSFPSYVYTLKSFNEFPSLVDKKDSFIDTIGVITEITSITSVRSCTRNA-D 1562
Query: 273 TQRRILNLKDT 283
+ +R ++++D
Sbjct: 1563 SLKRNVHMRDA 1573
>gi|108862781|gb|ABA99343.2| hypothetical protein LOC_Os12g35400 [Oryza sativa Japonica Group]
Length = 735
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/163 (20%), Positives = 71/163 (43%), Gaps = 12/163 (7%)
Query: 140 LRRYNNARGDGKVFSFDLL--DSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPA 197
L + +A+ + F DLL D+ G I F + +++ ++ G+VY + ++K
Sbjct: 317 LWDFCDAKDESNFFHKDLLLLDAKGNSIHAHIFPPLTEKYKPLLTEGKVYYLHSYTVKYG 376
Query: 198 QKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENN--SIVDVIGI 255
+ + + NE I + ++ C P +S +++ + N VDV+G+
Sbjct: 377 NRLYRPVPNEMMILFTTWTEIEECIGGPAGFPTIVYSLTSYNDVPNLVGNVDRFVDVVGV 436
Query: 256 VISVNPSVPILRKNGMETQRRILNLKDTSGR---SVELTLWGD 295
+ + + P + + R+ +LK S + + LWG+
Sbjct: 437 ITEI--TTPTMLR---PKSRKADSLKKDSSNINSILNVALWGE 474
>gi|391336060|ref|XP_003742401.1| PREDICTED: replication protein A 70 kDa DNA-binding subunit-like
[Metaseiulus occidentalis]
Length = 271
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 21/84 (25%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYN------------------NARGDGKVFSFD 156
I PI ALNP+Q R I+ RVT+KGD++ + N + DGK F+
Sbjct: 149 ITPIIALNPFQSRCTIRGRVTSKGDIKTWEKIIDVCGILKGVGDIQTINRKSDGKPFTKR 208
Query: 157 ---LLDSDGGEIRVTCFNAVVDRF 177
++D+ + +T +N + +
Sbjct: 209 EAFIVDTSNKVVSLTLWNDAISKI 232
>gi|301774418|ref|XP_002922643.1| PREDICTED: uncharacterized protein CXorf57-like [Ailuropoda
melanoleuca]
gi|281338803|gb|EFB14387.1| hypothetical protein PANDA_011608 [Ailuropoda melanoleuca]
Length = 859
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 64/152 (42%), Gaps = 24/152 (15%)
Query: 129 AIKARVTAKGDLRRYNNARGDGKVF----SFDLLDSDGGEIRVTCFNAVVDRFYEIIEVG 184
A+ R+ K LR Y + D K+ +F + G + V +NA+ +Y+ + VG
Sbjct: 236 ALLVRILHKSKLRYY--GKPDKKMIEPYQTFLEVADSSGTVSVIMWNALCPEWYKSLRVG 293
Query: 185 RVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDS----------------- 227
V L+ S+K + F + ++ ST+++C D
Sbjct: 294 LVLLLQDYSVKKSYP-FRMQPLPVDPQIKLISTMEICLNLRDPPTNIIIIPEKQVKPEWR 352
Query: 228 IPKQQFSFRHISEIESAENNSIVDVIGIVISV 259
+PK F SE++ N I DVIGI+I V
Sbjct: 353 LPKLNHRFITRSELDDVPENYICDVIGILIFV 384
>gi|414888071|tpg|DAA64085.1| TPA: hypothetical protein ZEAMMB73_996720 [Zea mays]
Length = 191
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/177 (18%), Positives = 80/177 (45%), Gaps = 7/177 (3%)
Query: 117 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL--DSDGGEIRVTCFNAVV 174
P++AL ++ +V K + R A +G + D++ D G I + +
Sbjct: 5 PLSALTLQDRNAEVQIQVHRKWEFR---GAVDNGPILHIDMILTDCTGNAIHCQIPSFLA 61
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFS 234
+ +VG++Y +++ S+ A+ + + + ++++ +T++LC P +
Sbjct: 62 ATRGDEFQVGKIYKMTRFSVARAKSTYKPVDGDLMLYVKPYTTLELCHTSPSGFPLYVYH 121
Query: 235 FRHISEIESAENNS--IVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVE 289
+I+ +N+ DV+GI+ ++ P+ + + R + +K+ G +V+
Sbjct: 122 LTSYDKIDPDGSNARNFHDVLGIITEISAIKPVGNAHIPSSYNRHVLIKNLRGSTVK 178
>gi|448721700|ref|ZP_21704243.1| replication factor A [Halococcus hamelinensis 100A6]
gi|445790772|gb|EMA41422.1| replication factor A [Halococcus hamelinensis 100A6]
Length = 472
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 89/220 (40%), Gaps = 38/220 (17%)
Query: 96 PPPNFRN--------HGPILKNEAPARIIP----------IAALNPYQGRWAIKARVTAK 137
P P FR G + E A +I +A + P A A+V
Sbjct: 16 PEPEFREAVERKVEEMGGLADEETAAMLIAHELSDDEVEGVADIEPGMEEAAFAAKVLRI 75
Query: 138 GDLRRY--NNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLK 195
GDLR + ++ +G+V + D+ D G IRV ++ + E +E G V I+ +
Sbjct: 76 GDLRTFERDDEDQEGRVVNLDVADE-TGHIRVAFWDDRAEAAVEELEAGDVLKIAG---Q 131
Query: 196 PAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGI 255
P ++ +N L+ A +D+ +E DSI +S + GI
Sbjct: 132 P-REGYNGLEVSASDAQPADIDIDVDLDEADSIGGLSLGQSDVS------------LTGI 178
Query: 256 VISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGD 295
V+ + R +G E + L L D +GR V +TLW D
Sbjct: 179 VLDTDSVRTFDRDDGSEGRVSNLTLGDETGR-VRVTLWDD 217
>gi|357487037|ref|XP_003613806.1| hypothetical protein MTR_5g041170 [Medicago truncatula]
gi|355515141|gb|AES96764.1| hypothetical protein MTR_5g041170 [Medicago truncatula]
Length = 445
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 8/126 (6%)
Query: 233 FSFRHISEIESAE--NNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVEL 290
F+ ++EI + + + +V VIG V + ++ G + Q L +KD S S+
Sbjct: 19 MKFKPLAEIVAGKWRADLLVHVIGYVHEIG-YCQVMAGTGKKLQVNFL-MKDLSDISLNC 76
Query: 291 TLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVND---FSGKSIGTIPSTQLFINPDFAE 347
TLW D+ K + E + G V+ +K GK+N+ + T +T+L IN D AE
Sbjct: 77 TLWEDYAAKFIKFNNENKETGPIIVM-LKYGKINEEGKYPLSVTNTYSATKLLINEDIAE 135
Query: 348 AHELRE 353
RE
Sbjct: 136 IKRFRE 141
>gi|71661367|ref|XP_817706.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70882913|gb|EAN95855.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 624
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 82/177 (46%), Gaps = 16/177 (9%)
Query: 128 WAIKARVTAKGDLRRYNNARGDGKVFSFDLL--DSDGGEIRVTCFNAVVDRFYEIIEVGR 185
+A+ R+ KG +R+ A G F FD + D +G + ++C Y+I +G
Sbjct: 228 YALDLRIIWKGK-QRHLTASGSMGRFVFDCIGVDRNGDAVSISCTGQ--SGLYDIFSLGD 284
Query: 186 VYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDS----IPKQQFSFRHISEI 241
++ L + + ++ + L S V L EE S P + F R ++ +
Sbjct: 285 CVCVTNACLTSRSEAEDTMRLQ----LNERSFVVLRGEEAVSNIPTHPCRMFGARSVTNL 340
Query: 242 ESAEN-NSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRS-VELTLWGDF 296
+ N IV V G+V SV+ + + + G +R ++L+D + S +++TLW +F
Sbjct: 341 INYSNVGDIVHVEGVVTSVSSAALVNTRRG-RVERSGISLQDPASSSLIDVTLWEEF 396
>gi|297798782|ref|XP_002867275.1| hypothetical protein ARALYDRAFT_913278 [Arabidopsis lyrata subsp.
lyrata]
gi|297313111|gb|EFH43534.1| hypothetical protein ARALYDRAFT_913278 [Arabidopsis lyrata subsp.
lyrata]
Length = 223
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 81/192 (42%), Gaps = 20/192 (10%)
Query: 112 PARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDG--KVFSFDLL--DSDGGEIRV 167
P I PI+ L I R+ +R + + D + DLL D G I+
Sbjct: 2 PLEITPISQLTLATDPCKINVRI-----VRLWGFPKKDKPEEFTGIDLLLVDEKGSRIQA 56
Query: 168 TCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEI-FLEATSTVDLCTEEDD 226
+ ++D+F + ++ G+ ++ L P F + ++I F+ T C + +
Sbjct: 57 SVKGKLLDKFQKDLKEGKCCVLMNFELCPNLGKFRSCDHPYKINFIFYT-----CVKPSE 111
Query: 227 SIPKQQ--FSFRHISEIESAENNS--IVDVIGIVISVNPSVPILRKNGMETQRRILNLKD 282
IP + F+ EI + N+ +D+IG ++ +N I G T+ L LKD
Sbjct: 112 EIPNLEACFNLCPFPEILARRNDDTIFIDIIGEIVGMNEVKSITTAEG-PTKLLNLQLKD 170
Query: 283 TSGRSVELTLWG 294
+++ LWG
Sbjct: 171 LGDSLIDVALWG 182
>gi|156375477|ref|XP_001630107.1| predicted protein [Nematostella vectensis]
gi|156217121|gb|EDO38044.1| predicted protein [Nematostella vectensis]
Length = 866
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 67/283 (23%), Positives = 118/283 (41%), Gaps = 44/283 (15%)
Query: 250 VDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVD 309
+++ IV SV + I K G +R + L D S L LW D E ++
Sbjct: 189 INIQAIVRSVGVTKDITTKTGRHIRRCEVKLFDEMCPSFALVLWND----------EFIE 238
Query: 310 VG--FFP---VLSVKSGKV--NDFSGKSIGTI-PSTQLFINPDFAEAHELREWFDSGGKN 361
+ + P +L + KV +D+ I T T + NPD EA +L +
Sbjct: 239 LAQTWIPKDNILFIADAKVTFDDYKKAMIATCDQKTIVTTNPDTREAQQLYMY------- 291
Query: 362 AATVSISREIAAGGAKN-EIHKTVSQIKNEGLG---RSEKPDWVTVRAFITFIKSDS--- 414
A + ++ E +G + + + TV+Q+K L ++K + + AF T + D+
Sbjct: 292 AQSADLADEEGSGDSLSVDYVLTVNQLKTRLLNWDDVTDKENAGILFAFFTELNIDTDDK 351
Query: 415 -FCYTACPLMIGDRQCNKKV-TQSG--NRWQC-DRCNQEIDECDYRYLLQAQIQDQTGLT 469
T C QCN++V + SG R +C N + +Y + + D TG
Sbjct: 352 YVVVTRCT------QCNQRVDSLSGLCTRTECPAAANNMTSQVKTQYEIPVSLTDHTGTV 405
Query: 470 WVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEII-RSRVF 511
++ E +LG A+E + D++F ++ R +V+
Sbjct: 406 QCRLPEKCAEAMLGYTAEEFLEVPQSQCTDIKFKYLLERCKVY 448
>gi|413943269|gb|AFW75918.1| hypothetical protein ZEAMMB73_045866 [Zea mays]
Length = 514
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 60/315 (19%), Positives = 119/315 (37%), Gaps = 47/315 (14%)
Query: 162 GGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLC 221
G I A+VD +I++ +VY + + + P++ + + N I + +
Sbjct: 2 GTSIHAEIQAALVDDKGSLIQIDKVYELKRFRVAPSRNYYKPVDNSMMIQFTLYTQAKVV 61
Query: 222 TEEDDSIPKQQFSFRHISEIESAENNS--IVDVIGIVISVNPSVPILRKNGMETQRRILN 279
+ + P+ + I + +N ++DV+GI+ + S+ + N R I
Sbjct: 62 EDPPPTFPRYAYKLTSFENIGNNVDNKTYLIDVLGILTEIG-SLYHVGYNNSNIIRDIF- 119
Query: 280 LKDTSGRSVELTLWG---------DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKS 330
LKD + S ++TLWG + C++ K ++ VG F G++
Sbjct: 120 LKDINNTSTKVTLWGHQASSFSVDNICDENDNKPIVVLFVGCL---------AKRFKGEA 170
Query: 331 -IGTIPSTQLFINPDFAEAHELREWFDSGG---KN---AATV------------SISREI 371
+ + + NPD EA F + KN A T+ + +E+
Sbjct: 171 YLSATTACTWYFNPDIPEAQVYYNNFHTVAPRNKNYWYAKTLLLNTKLQMIRPQATKKEL 230
Query: 372 AAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNK 431
A N KT+ ++ + + ++ + + +C +CNK
Sbjct: 231 QASQTLNIEDKTIEELLQLDPDMFPEQGFKCTVIISRLVQDGRWWFPSC------IKCNK 284
Query: 432 KVTQSGNRWQCDRCN 446
+Q+ +QC CN
Sbjct: 285 SSSQTSTGYQCTLCN 299
>gi|391326710|ref|XP_003737855.1| PREDICTED: replication factor A protein 1-like [Metaseiulus
occidentalis]
Length = 206
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 180 IIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHIS 239
+I VG+ Y I+ + K N + E E L+ T L + +PK Q +
Sbjct: 1 MITVGQCYKIN--AYKVEAVNPQYRATEHECKLQLTKLSKLVPIAGNDLPKTQAQTTVLI 58
Query: 240 EIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNK 299
E+ S N+ VD++ +V V ++G+ +++ + + D S + V L LW +F K
Sbjct: 59 ELLSKPVNTTVDILVVVFDVRLPQTFNSRDGINREKQTVTVLDDSMKMVNLGLWSEFVGK 118
>gi|357488491|ref|XP_003614533.1| hypothetical protein MTR_5g055160 [Medicago truncatula]
gi|355515868|gb|AES97491.1| hypothetical protein MTR_5g055160 [Medicago truncatula]
Length = 270
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 66/144 (45%), Gaps = 5/144 (3%)
Query: 118 IAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRF 177
I+ ++P + W + RV + Y N + L++ G I + ++ +F
Sbjct: 8 ISNVSPRKQSWTLVVRVVRAWFGQDYKNKKLPF-FMELVLMNRKGDRIGASIRRTLIYKF 66
Query: 178 YEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRH 237
E ++ G V+ IS ++ ++ NE+++ + V L + +P +SF
Sbjct: 67 KEQLQEGMVFTISSFNVASNNGSYRPSCNEYKLDFTINTKVKLS--KTVLVPTNVYSFTP 124
Query: 238 ISEI--ESAENNSIVDVIGIVISV 259
+ ES +NN +VDVIG++I V
Sbjct: 125 APHVFNESYDNNYLVDVIGVMIGV 148
>gi|357504883|ref|XP_003622730.1| Replication protein A1-like protein [Medicago truncatula]
gi|355497745|gb|AES78948.1| Replication protein A1-like protein [Medicago truncatula]
Length = 542
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 85/412 (20%), Positives = 162/412 (39%), Gaps = 40/412 (9%)
Query: 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV 174
I P AA+ + ++ RV + +NN D + LLD G+I+ + +V
Sbjct: 5 ITPAAAIVAGKINIKLRVRVIHVWTVSEFNNPNEDNSIHML-LLDDKFGKIQASAKKHLV 63
Query: 175 DRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEI-FLEATSTVDLCTEEDDSIPKQQF 233
R +E G Y I + + ++ +++ ++ T + + +IP F
Sbjct: 64 SRIRSNVEEGSTYDIENVLVTKNDPKYQVTQHRFKLNLIDKTKFFKI---DATTIPLNHF 120
Query: 234 SFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLW 293
F +EI AE V V+ V NG ++ L L+D+ R V TLW
Sbjct: 121 DFMPFNEILEAEREEKVVVVERDELKEKDV-----NGRRSKIMDLTLQDSESRRVHCTLW 175
Query: 294 GDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELRE 353
++ + L D V+ ++ K+ + G ++E +
Sbjct: 176 ANYAERMNSFLAAH-DPSSPVVVLIQQCKLKKYQGI---------------MDVSNEFKS 219
Query: 354 WFDSGGKNAATVSISREIAAGGAK--NEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIK 411
D GG + SIS + +++ +T + + +E+ + V A I I+
Sbjct: 220 KID-GGDVQVSQSISHNTTSTVVSLVDDMLQTKRMTIEDLIEATEQCQGI-VLATICGIE 277
Query: 412 SD-SFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTW 470
S+ S+ Y AC +C +V +R C +CN + R+ L Q+ D TG T
Sbjct: 278 SEYSWYYQACT------KCVGRVRTVASRLYCGKCNTGRNAV-ARFKLHVQVIDNTGSTS 330
Query: 471 VTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKE 522
F + + + ++ M+ + + + + S V Q LF++++ +
Sbjct: 331 FILFDRNVSKYVNGTIQD--MIDAQPNNSSDYPSDLDSFVGKQMLFKVEVSD 380
>gi|414877608|tpg|DAA54739.1| TPA: hypothetical protein ZEAMMB73_276734 [Zea mays]
Length = 222
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 59/131 (45%), Gaps = 8/131 (6%)
Query: 126 GRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIR-VTCFNAVVDRFYEIIEVG 184
G+++I ARV K + + R F D +G +I +T + +V F ++
Sbjct: 48 GKYSIVARVEVKFPIEPHYRDRQ-----HFIFSDINGTKIEAITSWYEIVKHFNNMLHEK 102
Query: 185 RVYLIS--KGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIE 242
VY + K L P + NF HL E++L + V+ T P + F ++++I
Sbjct: 103 HVYKMHNIKFGLHPGEFNFRHLNGPMELYLNQQTIVEPYTVPIQMAPFPKHIFLNLADIV 162
Query: 243 SAENNSIVDVI 253
N ++V+ +
Sbjct: 163 EMPNMTLVECL 173
>gi|328865103|gb|EGG13489.1| hypothetical protein DFA_11250 [Dictyostelium fasciculatum]
Length = 520
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 68/118 (57%), Gaps = 9/118 (7%)
Query: 241 IESAENNSI-VDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNK 299
IE+ +SI VDVIG ++S++ I +NG ++N+ DTS S+++T WG+
Sbjct: 279 IETVNRDSILVDVIGKILSISDISSIELRNGGIVPTLLVNIFDTSNTSIDITFWGE---- 334
Query: 300 EGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINP-DFAEAHELREWFD 356
Q+ + VG ++++ K+ ++SG+S+ + +++L INP +F + +L + +
Sbjct: 335 HALSCQQQLKVG--DIITLYQVKLTNYSGRSL-SFATSRLDINPSNFPQYQQLLAFIN 389
>gi|297811003|ref|XP_002873385.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297319222|gb|EFH49644.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 195
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 10/79 (12%)
Query: 249 IVDVIGIVISVNPSVPILRKNGME-TQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEM 307
I DVIG+V V+P+ I R+N E +R + + D + ++V ++LW D GQ+L +M
Sbjct: 36 IPDVIGVVQIVSPNNSIRRRNDNELIPKRDITVADETKKTVVVSLWNDLPTGIGQELLDM 95
Query: 308 VDVGFFPVLSVKSGKVNDF 326
D KS K DF
Sbjct: 96 AD---------KSLKAGDF 105
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 43/79 (54%)
Query: 479 EEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRA 538
E+I+ C E LK E F ++ +++ +LFR+ + ++ Y E+R TV
Sbjct: 113 EDIISCIVDEPNKLKSEEGGVNEFQTKMKEVIWSPHLFRISVSQQEYNREKRQTTTVRGV 172
Query: 539 DQVNYSSESRYLLDLISKS 557
+++++E+R LL ISK+
Sbjct: 173 SPIDFTAETRLLLQDISKN 191
>gi|261327352|emb|CBH10327.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
DAL972]
Length = 598
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 84/180 (46%), Gaps = 23/180 (12%)
Query: 129 AIKARVTAKGDLRRYNNARGDGKVFSFDLL--DSDGGEIRVTCF-NAVVDRFYEIIEVGR 185
+ RV K +R+ ++ G+ F+ D + D+DG + V+ F ++V+ +++ + R
Sbjct: 199 VVYLRVVWKNKIRQVASSGILGR-FAVDCVGVDADGDAVSVSFFGSSVISDMFDVGDCIR 257
Query: 186 V---YLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQ-QFSFRHISE- 240
+ KG ++K N +W +ST C + IPK ++ F S
Sbjct: 258 CRNPAFVDKGESGYSEK-LNVF--DW------SSTPGCCAGAEHLIPKHPRYVFFSCSVQ 308
Query: 241 --IESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSG--RSVELTLWGDF 296
+E E IV V G V + +P+ + + G R ++ L+D + S+E+TLWGD
Sbjct: 309 YLVECCEVGDIVSVYGEVAAFSPTTLVNTRYG-HVGRSVVELRDLNSLQHSIEVTLWGDM 367
>gi|321469756|gb|EFX80735.1| hypothetical protein DAPPUDRAFT_243363 [Daphnia pulex]
Length = 409
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARG-DGKVFSFDLLDSDGGEIRVTCFN 171
A I PI+ L I+ARV ++ + + G + K F+ L D D G I+ F
Sbjct: 307 ADITPISGLEEGVNSGTIRARVVSQPIVDLWKKNTGFNMKFFTVQLRD-DTGTIKAKAFA 365
Query: 172 AVVDRFYEIIEVGRVYLISKGSLK 195
RF+E+ +V R Y I K +LK
Sbjct: 366 ENFQRFHELFQVDREYAIKKATLK 389
>gi|72387566|ref|XP_844207.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|62360547|gb|AAX80960.1| hypothetical protein, conserved [Trypanosoma brucei]
gi|70800740|gb|AAZ10648.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 598
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 82/180 (45%), Gaps = 23/180 (12%)
Query: 129 AIKARVTAKGDLRRYNNARGDGKVFSFDLL--DSDGGEIRVTCF-NAVVDRFYEIIEVGR 185
+ RV K +R+ ++ G+ F+ D + D+DG + V+ F ++V+ +++ + R
Sbjct: 199 VVYLRVVWKNKIRQVASSGILGR-FAVDCVGVDADGDAVSVSFFGSSVISDMFDVGDCIR 257
Query: 186 V---YLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQ----FSFRHI 238
+ KG ++K N +W +ST C + IPK FS
Sbjct: 258 CRNPAFVDKGESGYSEK-LNVF--DW------SSTPGCCAGAEHLIPKHPRYVFFSCSVQ 308
Query: 239 SEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSG--RSVELTLWGDF 296
+E E IV V G V + +P+ + + G R ++ L+D + S+E+TLWGD
Sbjct: 309 YLVECCEVGDIVSVYGEVAAFSPTTLVNTRYG-HVGRSVVELRDLNSLQHSIEVTLWGDM 367
>gi|357506747|ref|XP_003623662.1| hypothetical protein MTR_7g074180 [Medicago truncatula]
gi|355498677|gb|AES79880.1| hypothetical protein MTR_7g074180 [Medicago truncatula]
Length = 326
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 81/188 (43%), Gaps = 5/188 (2%)
Query: 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
A+ PI+A++ + + RV A L R N + L+D GG I T
Sbjct: 3 AKYTPISAISGGRKNLKMCVRV-AHIWLIRENKVPTSIIFMNMLLVDEKGGRIHATARKD 61
Query: 173 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQ 232
+V +F +++ G Y + + + ++ N+ ++ + ST +IP
Sbjct: 62 LVAKFRCMVQEGGTYQLENAIVGFNESHYKATSNKHKLSMMHNST--FTKVHSPAIPMNV 119
Query: 233 FSFRHISEIESAENNSI-VDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELT 291
F F+ +EI S+ + VIG VI + K+G +++ L L+D + +
Sbjct: 120 FEFKPFNEILSSTVEEVSTAVIGHVIE-RGDIRETEKDGRKSRVIDLTLEDLENNRLHCS 178
Query: 292 LWGDFCNK 299
LWG+ +K
Sbjct: 179 LWGEHADK 186
>gi|391333915|ref|XP_003741355.1| PREDICTED: uncharacterized protein LOC100901486 [Metaseiulus
occidentalis]
Length = 1310
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 4/107 (3%)
Query: 181 IEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSI-PKQQFSFRHIS 239
IE+G+ Y I+ +KP F + +++E+ L S + E D++I P+ + I
Sbjct: 1110 IEIGKCYQITIFRVKPVNVKFENANHDFEVQLTKLSKI---REIDNAIIPELKTDLTPIV 1166
Query: 240 EIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGR 286
EI N V+V+ IV V P+ + ++ R+ + L D S R
Sbjct: 1167 EILGRNGNDFVNVMAIVYDVEPAQTVDCRDAKPRTRQNVTLVDNSLR 1213
>gi|383620357|ref|ZP_09946763.1| replication factor A [Halobiforma lacisalsi AJ5]
gi|448695765|ref|ZP_21697514.1| replication factor A [Halobiforma lacisalsi AJ5]
gi|445784219|gb|EMA35036.1| replication factor A [Halobiforma lacisalsi AJ5]
Length = 487
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 69/161 (42%), Gaps = 20/161 (12%)
Query: 140 LRRYNNARG-DGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQ 198
+R ++ G +GKV + L DS G IRVT ++ + E+ E G + G ++
Sbjct: 186 VRTFDRDDGSEGKVSNVTLGDSTG-RIRVTLWDEQAETAEEL-EAGTTVEVVDGYVRERD 243
Query: 199 KNFN-HLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVI 257
N H+ N I + DS P IE E VD+ G+V
Sbjct: 244 GNLELHVGNRGAIEEVDEEVEYVP----DSTP-----------IEDVEMGQTVDLAGVVR 288
Query: 258 SVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCN 298
S +P R +G E Q R + ++D +G + + LWG+ +
Sbjct: 289 SADPKRTFDRDDGSEGQVRNVRIQDATG-DIRVALWGEKAD 328
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,170,137,933
Number of Sequences: 23463169
Number of extensions: 411865048
Number of successful extensions: 995141
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 460
Number of HSP's that attempted gapping in prelim test: 990785
Number of HSP's gapped (non-prelim): 1465
length of query: 560
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 412
effective length of database: 8,886,646,355
effective search space: 3661298298260
effective search space used: 3661298298260
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 80 (35.4 bits)