BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008606
(560 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6NY74|RFA1_DANRE Replication protein A 70 kDa DNA-binding subunit OS=Danio rerio
GN=rpa1 PE=1 SV=1
Length = 601
Score = 330 bits (847), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 185/508 (36%), Positives = 290/508 (57%), Gaps = 28/508 (5%)
Query: 61 QNPGSFSTPN---SGTFRAPNAGS--IVRSFQP---TVQPPYQPPPNFRNHGPILKNEAP 112
Q PG P G +AP+ R QP + Y+P P+ P
Sbjct: 106 QMPGKIGDPTPYVEGQSKAPSTAPAPTARPLQPQNGSDGSTYRPSAQSFGKKPMAAPNTP 165
Query: 113 ---ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTC 169
++++PIA+LNPYQ +W I+ARVT K +R ++N+RGDGK+FS +L+D + GEIR T
Sbjct: 166 GGSSKVVPIASLNPYQSKWTIRARVTNKSAIRTWSNSRGDGKLFSMELVD-ESGEIRATG 224
Query: 170 FNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIP 229
FN VD+F+ +IE G+V+ ISKG+LK A K F+ LKN++E+ L +++ C + +D +P
Sbjct: 225 FNNEVDKFFSLIEQGKVFYISKGTLKIANKQFSSLKNDYEMTLNGETSIIPCEDSND-VP 283
Query: 230 KQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVE 289
Q F I+++ES E ++I+DVIG+ + I+ KN E +R + L D SGR ++
Sbjct: 284 MLQCDFVSIADLESREKDTILDVIGVCKNAEDVARIMTKNSREVSKRNIQLIDMSGRVIQ 343
Query: 290 LTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAH 349
LT+WG E D P+L++K +++DF G+S+ T+ S+ + INPD EA+
Sbjct: 344 LTMWGSDA--------ETFDGSGQPILAIKGARLSDFGGRSLSTLYSSTVMINPDIPEAY 395
Query: 350 ELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITF 409
+LR W+D G S++ GG N KT++++KNE LG +K D+ + A I +
Sbjct: 396 KLRGWYDKEGHALDGQSMTELRGPGGGGNTNWKTLAEVKNEHLGHGDKADYFSCIATIVY 455
Query: 410 IKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGL 468
I+ ++ Y ACP + CNKKV Q ++C++C++E + YR +L A I D
Sbjct: 456 IRKENCLYQACP----SKDCNKKVVDQQNGMFRCEKCDKEFPDFKYRLMLSANIADFGDN 511
Query: 469 TWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDE 528
WVT FQ++ E +LG + L LK ++ F E+ + FN ++FR ++K E Y DE
Sbjct: 512 QWVTCFQDTAETLLGQNSSYLGQLKD--TNEAAFDEVFQHANFNTFVFRNRVKLETYNDE 569
Query: 529 QRVKITVIRADQVNYSSESRYLLDLISK 556
R+K+TV+ A V++ S+ L+ I K
Sbjct: 570 SRIKVTVVDAKPVDHREYSKRLIINIRK 597
>sp|P27694|RFA1_HUMAN Replication protein A 70 kDa DNA-binding subunit OS=Homo sapiens
GN=RPA1 PE=1 SV=2
Length = 616
Score = 318 bits (815), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 182/476 (38%), Positives = 277/476 (58%), Gaps = 23/476 (4%)
Query: 89 TVQPPYQPPPNF-RNHGPILKNEA---PARIIPIAALNPYQGRWAIKARVTAKGDLRRYN 144
TV Y F + GP L + + ++++PIA+L PYQ +W I ARVT K +R ++
Sbjct: 154 TVSKAYGASKTFGKAAGPSLSHTSGGTQSKVVPIASLTPYQSKWTICARVTNKSQIRTWS 213
Query: 145 NARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHL 204
N+RG+GK+FS +L+D + GEIR T FN VD+F+ +IEV +VY SKG+LK A K F +
Sbjct: 214 NSRGEGKLFSLELVD-ESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAV 272
Query: 205 KNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVP 264
KN++E+ ++V C E+D +P QF F I ++E+ +S+VD+IGI S +
Sbjct: 273 KNDYEMTFNNETSVMPC-EDDHHLPTVQFDFTGIDDLENKSKDSLVDIIGICKSYEDATK 331
Query: 265 I-LRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKV 323
I +R N E +R + L DTSG+ V TLWG+ +K Q PVL++K +V
Sbjct: 332 ITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQ--------PVLAIKGARV 383
Query: 324 NDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAG-GAKNEIHK 382
+DF G+S+ + S+ + NPD EA++LR WFD+ G+ VSIS + G G N K
Sbjct: 384 SDFGGRSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQALDGVSISDLKSGGVGGSNTNWK 443
Query: 383 TVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQ 441
T+ ++K+E LG+ +KPD+ + A + +++ ++ Y ACP + CNKKV Q ++
Sbjct: 444 TLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPT----QDCNKKVIDQQNGLYR 499
Query: 442 CDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVR 501
C++C+ E YR +L I D WVT FQES E ILG A L LK +++
Sbjct: 500 CEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKD--KNEQA 557
Query: 502 FGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKS 557
F E+ ++ F ++FR+++K E Y DE R+K TV+ V+Y R L+ I +S
Sbjct: 558 FEEVFQNANFRSFIFRVRVKVETYNDESRIKATVMDVKPVDYREYGRRLVMSIRRS 613
>sp|Q5R7Q4|RFA1_PONAB Replication protein A 70 kDa DNA-binding subunit OS=Pongo abelii
GN=RPA1 PE=2 SV=1
Length = 616
Score = 314 bits (805), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 181/476 (38%), Positives = 276/476 (57%), Gaps = 23/476 (4%)
Query: 89 TVQPPYQPPPNF-RNHGPILKNEA---PARIIPIAALNPYQGRWAIKARVTAKGDLRRYN 144
TV Y F + GP L + + ++++PIA+L PYQ +W I ARVT K +R ++
Sbjct: 154 TVSKAYGASKTFGKAAGPSLSHNSGGTQSKVVPIASLTPYQSKWTICARVTNKSQIRTWS 213
Query: 145 NARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHL 204
N+RG+ K+FS +L+D + GEIR T FN VD+F+ +IEV +VY SKG+LK A K F +
Sbjct: 214 NSRGEEKLFSLELVD-ESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAV 272
Query: 205 KNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVP 264
KN++E+ ++V C E+D +P QF F I ++E+ +S+VD+IGI S +
Sbjct: 273 KNDYEMTFNNETSVMPC-EDDHHLPTVQFDFTGIDDLENKSKDSLVDIIGICKSYEDATK 331
Query: 265 I-LRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKV 323
I +R N E +R + L DTSG+ V TLWG+ +K Q PVL++K +V
Sbjct: 332 ITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQ--------PVLAIKGARV 383
Query: 324 NDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAG-GAKNEIHK 382
+DF G+S+ + S+ + NPD EA++LR WFD+ G+ VSIS + G G N K
Sbjct: 384 SDFGGRSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQALDGVSISDLKSGGVGGGNTNWK 443
Query: 383 TVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQ 441
T+ ++K+E LG+ +KPD+ + A + +++ ++ Y ACP + CNKKV Q ++
Sbjct: 444 TLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPT----QDCNKKVIDQQNGLYR 499
Query: 442 CDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVR 501
C++C+ E YR +L I D WVT FQES E ILG A L LK +++
Sbjct: 500 CEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKD--KNEQA 557
Query: 502 FGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKS 557
F E+ ++ F ++FR+++K E Y DE R+K TV+ V+Y R L+ I +S
Sbjct: 558 FEEVFQNANFRSFIFRVRVKVETYNDESRIKATVMDVKPVDYREYGRRLVMSIRRS 613
>sp|Q8VEE4|RFA1_MOUSE Replication protein A 70 kDa DNA-binding subunit OS=Mus musculus
GN=Rpa1 PE=2 SV=1
Length = 623
Score = 305 bits (780), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 170/449 (37%), Positives = 268/449 (59%), Gaps = 19/449 (4%)
Query: 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
++++PIA+L PYQ +W I ARVT K +R ++N+RG+GK+FS +L+D + GEIR T FN
Sbjct: 191 SKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVD-ESGEIRATAFNE 249
Query: 173 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQ 232
VD+F+ +IEV +VY SKG+LK A K F+ +KN++E+ ++V C E+ +P Q
Sbjct: 250 QVDKFFPLIEVNKVYYFSKGALKIANKQFSAVKNDYEMTFNNETSVLPC-EDGHHLPTVQ 308
Query: 233 FSFRHISEIESAENNSIVDVIGIVISVNPSVPI-LRKNGMETQRRILNLKDTSGRSVELT 291
F F I ++ES +++VD+IGI S S+ I ++ N E +R + L D SG+ V T
Sbjct: 309 FDFTGIGDLESKAKDALVDIIGICKSYEDSIKITVKSNNREVAKRNIYLMDMSGKVVTTT 368
Query: 292 LWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHEL 351
LWG+ +K Q PV+++K +V+DF G+S+ + S+ + +NPD EA++L
Sbjct: 369 LWGEDADKFDGSRQ--------PVMAIKGARVSDFGGRSLSVLSSSTVIVNPDIPEAYKL 420
Query: 352 REWFDSGGKNAATVSISREIAAG-GAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFI 410
R WFDS G+ VSIS + G G N KT+ + K+E LG+ +K D+ + A + F+
Sbjct: 421 RGWFDSEGQALDGVSISDHRSGGAGGGNTNWKTLHEAKSENLGQGDKADYFSTVAAVVFL 480
Query: 411 KSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLT 469
+ ++ Y ACP + CNKKV Q ++C++C++E YR +L A I D
Sbjct: 481 RKENCMYQACPT----QDCNKKVIDQQNGLYRCEKCDREFPNFKYRMILSANIADFQENQ 536
Query: 470 WVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQ 529
WVT FQES E ILG +Y+ + + +++ F E+ ++ F + FR+++K E Y DE
Sbjct: 537 WVTCFQESAEAILG--QNTMYLGELKEKNEQAFEEVFQNANFRSFTFRIRVKLETYNDES 594
Query: 530 RVKITVIRADQVNYSSESRYLLDLISKSF 558
R+K TV+ V++ R L+ I K+
Sbjct: 595 RIKATVMDVKPVDFRDYGRRLIANIRKNM 623
>sp|Q5FW17|RFA1_XENTR Replication protein A 70 kDa DNA-binding subunit OS=Xenopus
tropicalis GN=rpa1 PE=2 SV=1
Length = 609
Score = 302 bits (773), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 168/446 (37%), Positives = 263/446 (58%), Gaps = 18/446 (4%)
Query: 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
++++PIA+LNPYQ +W ++ARVT KG +R ++N+RG+GK+FS +++D + GEIR T FN
Sbjct: 174 SKVVPIASLNPYQSKWTVRARVTNKGQIRTWSNSRGEGKLFSIEMVD-ESGEIRATAFNE 232
Query: 173 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQ 232
D+F+ +IEV +VY SKG+LK A K + +KN++E+ + ++V C + D +P Q
Sbjct: 233 QADKFFSLIEVNKVYYFSKGTLKIANKQYTSVKNDYEMTFNSETSVIPCDDSAD-VPMVQ 291
Query: 233 FSFRHISEIESAENNSIVDVIGIVISVNPSVPI-LRKNGMETQRRILNLKDTSGRSVELT 291
F F I E+ES ++++D+IGI + + +R N E +R +NL D+SG+ V T
Sbjct: 292 FEFVPIGELESKNKDTVLDIIGICKNAEEVTKVTIRSNNREVSKRNINLMDSSGKVVSTT 351
Query: 292 LWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHEL 351
LWG+ +K Q PV+++K +++DF G+S+ + S+ + INPD EA +L
Sbjct: 352 LWGEDADKFDGSRQ--------PVVAIKGARLSDFGGRSLSVLSSSTVMINPDIPEAFKL 403
Query: 352 REWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIK 411
R WFDS G+ SIS G N K++ ++K E LG EK D+ T A I +++
Sbjct: 404 RAWFDSEGQVVEGTSISESRGGTGGGNTNWKSLLEVKTENLGHGEKADYFTSVATIVYLR 463
Query: 412 SDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTW 470
++ Y ACP + CNKKV Q ++C++C++E YR +L A I D W
Sbjct: 464 KENCLYQACP----SQDCNKKVIDQQNGLFRCEKCDKEFPNYKYRLILSANIADFGENQW 519
Query: 471 VTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQR 530
+T FQES E ILG A L LK +++ + E+ ++ F Y FR+++K E Y DE R
Sbjct: 520 ITCFQESAESILGQNATYLGELKE--KNEQAYDEVFQNANFRSYTFRIRVKLETYNDESR 577
Query: 531 VKITVIRADQVNYSSESRYLLDLISK 556
+K T + V++ SR L+ I K
Sbjct: 578 IKATAMDVKPVDHKEYSRRLIMNIRK 603
>sp|Q01588|RFA1_XENLA Replication protein A 70 kDa DNA-binding subunit OS=Xenopus laevis
GN=rpa1 PE=1 SV=1
Length = 609
Score = 301 bits (772), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 169/447 (37%), Positives = 264/447 (59%), Gaps = 19/447 (4%)
Query: 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
++++PIA+LNPYQ +W ++ARVT KG +R ++N+RG+GK+FS +++D + GEIR T FN
Sbjct: 173 SKVVPIASLNPYQSKWTVRARVTNKGQIRTWSNSRGEGKLFSIEMVD-ESGEIRATAFNE 231
Query: 173 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQ 232
D+F+ IIEV +VY SKG+LK A K + +KN++E+ + ++V C + D +P Q
Sbjct: 232 QADKFFSIIEVNKVYYFSKGTLKIANKQYTSVKNDYEMTFNSETSVIPCDDSAD-VPMVQ 290
Query: 233 FSFRHISEIESAENNSIVDVIGIVISVNPSVPI-LRKNGMETQRRILNLKDTSGRSVELT 291
F F I E+ES ++++D+IG+ +V + ++ N E +R ++L D+SG+ V T
Sbjct: 291 FEFVSIGELESKNKDTVLDIIGVCKNVEEVTKVTIKSNNREVSKRSIHLMDSSGKVVSTT 350
Query: 292 LWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHEL 351
LWG+ +K Q PV+++K +++DF G+S+ + S+ + INPD EA +L
Sbjct: 351 LWGEDADKFDGSRQ--------PVVAIKGARLSDFGGRSLSVLSSSTVMINPDIPEAFKL 402
Query: 352 REWFDSGGKNAATVSISR-EIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFI 410
R WFDS G+ SIS G N K++ ++KNE LG EK D+ T A I ++
Sbjct: 403 RAWFDSEGQVVEGTSISESRGGGTGGGNTNWKSLLEVKNENLGHGEKADYFTSVATIVYL 462
Query: 411 KSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLT 469
+ ++ Y ACP + CNKKV Q ++C++CN+E YR +L A I D
Sbjct: 463 RKENCLYQACP----SQDCNKKVIDQQNGLFRCEKCNKEFPNFKYRLILSANIADFGENQ 518
Query: 470 WVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQ 529
W+T FQES E ILG A L LK +++ + E+ ++ F Y FR ++K E Y DE
Sbjct: 519 WITCFQESAESILGQNATYLGELKE--KNEQAYDEVFQNANFRSYTFRARVKLETYNDES 576
Query: 530 RVKITVIRADQVNYSSESRYLLDLISK 556
R+K T + V++ SR L+ I K
Sbjct: 577 RIKATAVDVKPVDHKEYSRRLIMNIRK 603
>sp|P22336|RFA1_YEAST Replication factor A protein 1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RFA1 PE=1 SV=1
Length = 621
Score = 301 bits (772), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 170/471 (36%), Positives = 270/471 (57%), Gaps = 34/471 (7%)
Query: 100 FRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLD 159
F N P + P I I L+PYQ W IKARV+ KG+++ ++N RGDGK+F+ + LD
Sbjct: 171 FANENPNSQKTRP--IFAIEQLSPYQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLD 228
Query: 160 SDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVD 219
+ GEIR T FN +F EI++ G+VY +SK L+PA+ F +L + +E+ L+ + ++
Sbjct: 229 T-SGEIRATAFNDFATKFNEILQEGKVYYVSKAKLQPAKPQFTNLTHPYELNLDRDTVIE 287
Query: 220 LCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILN 279
C +E + +PK F+F + I++ E NS VDV+GI+ ++NP + + G + RR +
Sbjct: 288 ECFDESN-VPKTHFNFIKLDAIQNQEVNSNVDVLGIIQTINPHFELTSRAGKKFDRRDIT 346
Query: 280 LKDTSGRSVELTLWG----DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIP 335
+ D SG S+ + LW DF EG V ++K +V DF GKS+
Sbjct: 347 IVDDSGFSISVGLWNQQALDFNLPEGS------------VAAIKGVRVTDFGGKSLSMGF 394
Query: 336 STQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGG-AKNEIHK------TVSQIK 388
S+ L NP+ EA+ L+ W+DS G+NA +++ +E GG + + K T+++ +
Sbjct: 395 SSTLIPNPEIPEAYALKGWYDSKGRNANFITLKQEPGMGGQSAASLTKFIAQRITIARAQ 454
Query: 389 NEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQ 447
E LGRSEK D+ +V+A I+F+K D+F Y AC + CNKKV Q W+C++C+
Sbjct: 455 AENLGRSEKGDFFSVKAAISFLKVDNFAYPAC----SNENCNKKVLEQPDGTWRCEKCDT 510
Query: 448 EIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIR 507
++RY+L I D+T W+T F + +++LG A L LK E D F +I +
Sbjct: 511 NNARPNWRYILTISIIDETNQLWLTLFDDQAKQLLGVDANTLMSLKEE--DPNEFTKITQ 568
Query: 508 SRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKSF 558
S N+Y FR++ +E+ Y D+ R++ TV +NY +E+ YL D +SK+
Sbjct: 569 SIQMNEYDFRIRAREDTYNDQSRIRYTVANLHSLNYRAEADYLADELSKAL 619
>sp|Q5ZJJ2|RFA1_CHICK Replication protein A 70 kDa DNA-binding subunit OS=Gallus gallus
GN=RPA1 PE=2 SV=1
Length = 614
Score = 292 bits (747), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 180/482 (37%), Positives = 275/482 (57%), Gaps = 26/482 (5%)
Query: 85 SFQPTVQPPYQPPPN-FRNHGPILKNEAP----ARIIPIAALNPYQGRWAIKARVTAKGD 139
S + P Y P N F + P ++++PIA+LNPYQ +W I ARVT KG
Sbjct: 146 SVAGSAAPKYHAPSNQFSKASAPSSVKTPGGTQSKVVPIASLNPYQSKWTICARVTQKGQ 205
Query: 140 LRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQK 199
+R ++N+RG+GK+FS +L+D + GEIR T FN D+F+ +IE+ +VY +KG+LK A K
Sbjct: 206 IRTWSNSRGEGKLFSIELVD-ESGEIRATAFNDQADKFFPLIELNKVYYFTKGNLKTANK 264
Query: 200 NFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISV 259
+ +KN++EI ++V C ++ +P QF F IS++E+ +SIVDVIGI S
Sbjct: 265 QYTAVKNDYEITFNNETSVVPC-DDAQHLPSVQFDFVSISDLENTPKDSIVDVIGICKSY 323
Query: 260 NPSVPILRK-NGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSV 318
I+ K + E +R ++L DTSG+ V TLWG+ E +K D PV+++
Sbjct: 324 EDVTKIVVKASNREVSKRNVHLMDTSGKLVTATLWGN----EAEKF----DGSRQPVIAI 375
Query: 319 KSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAK- 377
K +V+DF G+S+ + S+ + +NPD EA +LR WFDS G+ SIS ++ G A
Sbjct: 376 KGARVSDFGGRSLSVLSSSTVVVNPDSPEAFKLRGWFDSEGQLLECASIS-DVRGGSASG 434
Query: 378 -NEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVT-Q 435
N KT+ + K+E LG+ +K D+ + I ++ ++ Y ACP + CNKKV Q
Sbjct: 435 VNTNWKTLYEAKSERLGQGDKADYFSCVGTIVHLRKENCMYQACP----SQDCNKKVIDQ 490
Query: 436 SGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYE 495
++C++C++E YR +L I D WVT FQES E ILG A L LK
Sbjct: 491 QNGLYRCEKCDREFPNFKYRMMLLVTIADSLDYQWVTCFQESAEFILGQSATFLGELKD- 549
Query: 496 LQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLIS 555
+++ F E+ ++ FN Y F++++K E Y DE R+K T + VNY S+ L+ I
Sbjct: 550 -KNEQAFEEVFQNANFNTYEFKIRVKLETYNDESRIKATALDVKPVNYREYSKRLIASIR 608
Query: 556 KS 557
++
Sbjct: 609 RN 610
>sp|Q24492|RFA1_DROME Replication protein A 70 kDa DNA-binding subunit OS=Drosophila
melanogaster GN=RpA-70 PE=1 SV=1
Length = 603
Score = 279 bits (713), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 161/440 (36%), Positives = 247/440 (56%), Gaps = 22/440 (5%)
Query: 117 PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDR 176
PI++L+PYQ +W IKARVT+K +R ++NARG+GK+FS DL+D + GEIR T F D+
Sbjct: 168 PISSLSPYQNKWVIKARVTSKSGIRTWSNARGEGKLFSMDLMD-ESGEIRATAFKEQCDK 226
Query: 177 FYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTE-EDDSIPKQQFSF 235
FY++I+V VY ISK LKPA K ++ L N +E+ + V LC + +DD IP+ +++
Sbjct: 227 FYDLIQVDSVYYISKCQLKPANKQYSSLNNAYEMTFSGETVVQLCEDTDDDPIPEIKYNL 286
Query: 236 RHISEIESAENNSIVDVIGIVISVNPSVP-ILRKNGMETQRRILNLKDTSGRSVELTLWG 294
IS++ EN + VD IGI V + R E ++R + L D S ++ LTLWG
Sbjct: 287 VPISDVSGMENKAAVDTIGICKEVGELQSFVARTTNKEFKKRDITLVDMSNSAISLTLWG 346
Query: 295 DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLF-INPDFAEAHELRE 353
D +Q PV+ VK ++N+F+G ++ + INPD EAH+LR
Sbjct: 347 DDAVNFDGHVQ--------PVILVKGTRINEFNGGKSLSLGGGSIMKINPDIPEAHKLRG 398
Query: 354 WFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSD 413
WFD+GG ++ +S G E T+ + LG +KPD+ +A + +K +
Sbjct: 399 WFDNGGGDSVANMVSARTGGGSFSTE-WMTLKDARARNLGSGDKPDYFQCKAVVHIVKQE 457
Query: 414 SFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVT 472
+ Y ACP CNKKV GN +++C++CN YR L+ I D T WV+
Sbjct: 458 NAFYRACP----QSDCNKKVVDEGNDQFRCEKCNALFPNFKYRLLINMSIGDWTSNRWVS 513
Query: 473 AFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRV-FNQYLFRLKIKEELYGDEQRV 531
+F E GE++LG ++E + L++D E I S + F ++F+L+ K E+YGD R
Sbjct: 514 SFNEVGEQLLGHTSQE---VGEALENDPAKAEQIFSALNFTSHIFKLRCKNEVYGDMTRN 570
Query: 532 KITVIRADQVNYSSESRYLL 551
K+TV +N+ +++LL
Sbjct: 571 KLTVQSVAPINHKEYNKHLL 590
>sp|Q92372|RFA1_SCHPO Replication factor A protein 1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=ssb1 PE=1 SV=1
Length = 609
Score = 274 bits (701), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 149/453 (32%), Positives = 252/453 (55%), Gaps = 21/453 (4%)
Query: 109 NEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVT 168
N I PI L+PYQ +W I+ARVT K +++ ++N RG+GK+FS +LLD + GEIR T
Sbjct: 173 NSLSTIIYPIEGLSPYQNKWTIRARVTNKSEVKHWHNQRGEGKLFSVNLLD-ESGEIRAT 231
Query: 169 CFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSI 228
FN VD FY+I++ G VY IS+ + A+K + +++NE+E+ E + + E+ ++
Sbjct: 232 GFNDQVDAFYDILQEGSVYYISRCRVNIAKKQYTNVQNEYELMFERDTEIRKA-EDQTAV 290
Query: 229 PKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPIL-RKNGMETQRRILNLKDTSGRS 287
P +FSF + E+ ++++DVIG++ +V P I R +R + + D +G
Sbjct: 291 PVAKFSFVSLQEVGDVAKDAVIDVIGVLQNVGPVQQITSRATSRGFDKRDITIVDQTGYE 350
Query: 288 VELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAE 347
+ +TLWG K V +L+ K KVNDF G+S+ + S+ + ++PD E
Sbjct: 351 MRVTLWG--------KTAIEFSVSEESILAFKGVKVNDFQGRSLSMLTSSTMSVDPDIQE 402
Query: 348 AHELREWFDSGGKN---AATVSISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVR 404
+H L+ W+D G+ A IS ++ G E K +++++ E LG SE PD+ +++
Sbjct: 403 SHLLKGWYDGQGRGQEFAKHSVISSTLSTTGRSAE-RKNIAEVQAEHLGMSETPDYFSLK 461
Query: 405 AFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQD 464
I +I+ + Y ACP CNKKV G W+C++CN+E D YRY++ + D
Sbjct: 462 GTIVYIRKKNVSYPACPAA----DCNKKVFDQGGSWRCEKCNKEYDAPQYRYIITIAVGD 517
Query: 465 QTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEEL 524
TG W+ F + G+ I+ A EL L+ D+ F + + Y+F+ + K++
Sbjct: 518 HTGQLWLNVFDDVGKLIMHKTADELNDLQE--NDENAFMNCMAEACYMPYIFQCRAKQDN 575
Query: 525 YGDEQRVKITVIRADQVNYSSESRYLLDLISKS 557
+ E RV+ TV+ +Q+++ ES+ L++ I +
Sbjct: 576 FKGEMRVRYTVMSINQMDWKEESKRLINFIESA 608
>sp|Q23696|RFA1_CRIFA Replication factor A 51 kDa subunit OS=Crithidia fasciculata
GN=RPA1 PE=1 SV=1
Length = 467
Score = 209 bits (531), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 142/442 (32%), Positives = 240/442 (54%), Gaps = 37/442 (8%)
Query: 114 RIIPIAALNPYQG-RWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA 172
+I PI +L P+ G +W I+ARV K D+R +N GK+FSF L+D + IR T FN
Sbjct: 8 QIQPIDSLTPFLGGKWWIRARVADKSDIRTWNKPTSQGKLFSFTLID-ESAAIRATVFND 66
Query: 173 VVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDD--SIPK 230
VD F ++ G+VY S G +K A + F+++ N++E+ + S V L ++ ++P
Sbjct: 67 AVDTFEPLVVNGQVYYFSGGQVKNANRRFSNVNNDYELTFDRASEVILARQDSSAAALPM 126
Query: 231 QQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKN-GMETQRRILNLKDTSGRSVE 289
Q+++F I ++ E S+VDV+G+V+ V+ I +K+ G E +R + + D S +VE
Sbjct: 127 QRYNFVPIELLKQREVGSLVDVLGVVLKVDEISSITQKSTGRELIKRNVKIGDMSA-AVE 185
Query: 290 LTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINP-DFAEA 348
+T W D E + V V++++ KV F G ++ + T++ +NP D +
Sbjct: 186 VTFWND----EAKAWNYPVGT----VVALRQLKVGSFDGVTLSSTYQTKIDVNPADLPDV 237
Query: 349 HELREWF-DSGGKNAATVS---ISREIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVR 404
+L W+ +GG N ++S + GG N K + +I++EG+GR KP++V VR
Sbjct: 238 KKLATWYVSTGGANVVSLSSQGLGAGGGGGGEGNRGRKYLDEIQSEGIGRGAKPEYVDVR 297
Query: 405 AFITFIKSDSFCYTACPLMIGDRQCNKKVTQ---SGNRWQCDRCNQEIDECDYRYLLQAQ 461
+ K D+ Y ACP CNKKVT+ G+R++C++C+ + RYL+ Q
Sbjct: 298 CVPIYFKQDAQWYDACP------TCNKKVTEEGAQGDRFRCEKCDATVVPTQ-RYLVSIQ 350
Query: 462 IQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIK 521
+ D W+T F E+G E G A EL E D + ++ ++R+ + RL++K
Sbjct: 351 VTDNVSQVWLTLFNEAGVEFFGMEASELKRRAQE--DPLYIAKLAQARMNRPVVMRLRVK 408
Query: 522 EE-----LYGDEQ-RVKITVIR 537
EE + G+E R++++V+R
Sbjct: 409 EETNANAMTGEESDRLRMSVVR 430
>sp|Q19537|RFA1_CAEEL Probable replication factor A 73 kDa subunit OS=Caenorhabditis
elegans GN=rpa-1 PE=1 SV=1
Length = 655
Score = 190 bits (483), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 137/461 (29%), Positives = 228/461 (49%), Gaps = 30/461 (6%)
Query: 96 PPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSF 155
PPP R + ++PIA + PY + I V+ K ++R + + KVF+F
Sbjct: 209 PPPARRTASNTERG-----VMPIAMVTPYVSNFKIHGMVSRKEEIRTF--PAKNTKVFNF 261
Query: 156 DLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEAT 215
++ DS+G IR T FN V + Y I Y +S GS+K A K FN+ +++EI L +
Sbjct: 262 EITDSNGDTIRCTAFNEVAESLYTTITENLSYYLSGGSVKQANKKFNNTGHDYEITLRSD 321
Query: 216 STVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNP-SVPILRKNGMETQ 274
S ++ E + PK + EI + ++DV+ +V ++P + K G
Sbjct: 322 SIIE-AGGELLAAPKLILKRVKLGEI-AGYAGQLIDVLVVVEKMDPEATEFTSKAGKSLI 379
Query: 275 RRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGK-SIGT 333
+R + L D SG V LTLWGD K +VD V++ K +F+G S+GT
Sbjct: 380 KREMELIDESGALVRLTLWGDEATK------ALVDDYVQKVIAFKGVIPREFNGGFSLGT 433
Query: 334 IPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLG 393
+T++ P+ A EL +W+ T + A G NE +T++ ++ G
Sbjct: 434 GSATRIISVPEIAGVSELYDWY---ANVKPTTEVKMMSQAAGGSNEAPRTIAGLQEMQFG 490
Query: 394 R-SEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDEC 452
+ S+K D+ TV+A IT + + Y C C KK+ ++C++CN+ +++
Sbjct: 491 KDSDKGDYATVKAMITRVNPTNALYRGC----ASEGCQKKLVGENGDYRCEKCNKNMNKF 546
Query: 453 DYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFN 512
+ Y++Q ++ D+TG +VTAF +S +I+G A EL L E D+ + I F
Sbjct: 547 KWLYMMQFELSDETGQVYVTAFGDSAAKIVGKSAAELGELHDESPDE--YNAIFERLQFV 604
Query: 513 QYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDL 553
++RL+ K + Y +E R K+TV D VN + +Y+ +L
Sbjct: 605 PKMWRLRCKMDSYNEEVRQKMTVYGVDDVN---QDKYIENL 642
>sp|O97472|RFA1_CAEBR Probable replication factor A 73 kDa subunit OS=Caenorhabditis
briggsae GN=rpa-1 PE=3 SV=1
Length = 658
Score = 187 bits (474), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 143/506 (28%), Positives = 243/506 (48%), Gaps = 45/506 (8%)
Query: 77 PNAGSIVRSFQPTVQ-PPYQPPPNFRNHGPILKNEAPA---------------------- 113
P A SI FQ + PP P + G N PA
Sbjct: 162 PEAESITSEFQENMSNPPAAKMPKRESGGEASHNRVPAPEPHRSRAPPPPARRGPSNTER 221
Query: 114 RIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAV 173
+IPIA + PY + I V+ K D++ N + K+F+F++ DS+G IR T FN
Sbjct: 222 GVIPIAMVTPYVNNFRIHGMVSRKEDIK--NIPAKNMKIFNFEITDSNGDTIRCTAFNET 279
Query: 174 VDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQF 233
+ F+ I Y +S GS++ A K FN+ +++EI L S V+ E + PK
Sbjct: 280 AESFHSTITENLSYYLSGGSVRQANKKFNNTGHDYEITLRNDSVVE-AGGELLAAPKLNL 338
Query: 234 SFRHISEIESAENNSIVDVIGIVISVNP-SVPILRKNGMETQRRILNLKDTSGRSVELTL 292
++EI + ++DV+ IV ++ + K G +R + L D S V LTL
Sbjct: 339 KRVSLAEI-AGHCGEMIDVLVIVEKMDAEATEFTSKAGKTLTKREMELIDESQALVRLTL 397
Query: 293 WGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGK-SIGTIPSTQLFINPDFAEAHEL 351
WGD + ++ VD V++ K +F+G S+GT T++ P+ + EL
Sbjct: 398 WGD------EAIKANVDDYHGKVIAFKGVIPREFNGGYSLGTGSGTRIIPVPEISGVSEL 451
Query: 352 REWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQIKNEGLGR-SEKPDWVTVRAFITFI 410
+W+ + ++ IS+ G +E +T++ ++ G+ S+K D+ +V+A IT I
Sbjct: 452 YDWYTTEKPHSELKLISQ---TSGGMSEAPRTIAGLQEMQFGKDSDKGDYASVKAMITRI 508
Query: 411 KSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTW 470
+S Y C C KKV +S ++C++CN+ +++ + Y++Q ++ D+TG +
Sbjct: 509 NPNSALYKGC----ASEGCQKKVIESDGEYRCEKCNKSMNKFKWLYMMQFELSDETGQVY 564
Query: 471 VTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQR 530
VTAF +S +++G A+E+ LK E ++ + F ++RL+ K E Y +E R
Sbjct: 565 VTAFGDSAAKVVGKTAQEVGDLKDENLNE--YNATFERLQFVPKMWRLRCKMETYNEEVR 622
Query: 531 VKITVIRADQVNYSSESRYLLDLISK 556
K+TV ++VN L +LI +
Sbjct: 623 QKMTVFSVEEVNQDKYIENLKELIEQ 648
>sp|Q6NSI4|CX057_HUMAN Uncharacterized protein CXorf57 OS=Homo sapiens GN=CXorf57 PE=1
SV=2
Length = 855
Score = 40.0 bits (92), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 64/152 (42%), Gaps = 24/152 (15%)
Query: 129 AIKARVTAKGDLRRYNNARGDGKVF----SFDLLDSDGGEIRVTCFNAVVDRFYEIIEVG 184
A+ R+ K LR Y + D K+ +F + G + V +NA+ +Y+ + VG
Sbjct: 236 ALLVRILHKSKLRYY--GKPDKKMIEPYQTFLEVADSSGTVSVIMWNALCPEWYKSLRVG 293
Query: 185 RVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDS----------------- 227
V L+ S+K + F + ++ ST+++C D
Sbjct: 294 LVLLLQDYSVKKSYP-FRIQPVPVDPQIKLISTMEICLNLRDPPTNIIIIPEKQVKPEWR 352
Query: 228 IPKQQFSFRHISEIESAENNSIVDVIGIVISV 259
+PK F SE++ N I DVIG+++ V
Sbjct: 353 LPKLNHRFTTRSELDDMPENCICDVIGLLVFV 384
>sp|F1QBY1|NIPLB_DANRE Nipped-B-like protein B OS=Danio rerio GN=nipblb PE=2 SV=1
Length = 2876
Score = 36.6 bits (83), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 49/123 (39%), Gaps = 17/123 (13%)
Query: 13 NPKIFSESELTAQKTIPSNNLPQPVRVNNYSAPNSGTFNLQNSGTFNSQNPGSF--STPN 70
NP +F E L Q IPS +PQ S S N Q + T P + +
Sbjct: 103 NPNVFREKSLMQQPMIPSYKMPQ------NSMHGSPASNYQQT-TITPSPPSRYVQTQAG 155
Query: 71 SGTFRAPNAGSIVRS-FQPTVQPP-----YQPPPNFRNHGPILKNEAPARIIPIAALNPY 124
SG+ P S V S + P Q P Y PP++ H PI + + I+P N +
Sbjct: 156 SGSRYMPQQNSPVPSPYAP--QSPAGYMQYSHPPSYPQHQPIQQVSVSSPIVPSGMRNIH 213
Query: 125 QGR 127
+
Sbjct: 214 DNK 216
>sp|B2GV47|CX057_RAT Uncharacterized protein CXorf57 homolog OS=Rattus norvegicus PE=2
SV=1
Length = 844
Score = 35.8 bits (81), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 64/148 (43%), Gaps = 22/148 (14%)
Query: 129 AIKARVTAKGDLRRY---NNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGR 185
A+ R+ K LR Y N + ++ DS G + V +NA+ +Y+ + VG
Sbjct: 236 ALLVRILHKSKLRYYGKPNKKMIEPYQTYLEVADS-SGMVSVIMWNALCPEWYKSLRVGL 294
Query: 186 VYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDS------IPKQQFS----- 234
+ L+ S+K + + + ++ ST+++C D IP++Q
Sbjct: 295 ILLLQDYSVKKSYP-LRIQPDPVDPQMKLISTMEICLNLRDPPTNIVIIPEKQLKSEWKL 353
Query: 235 ------FRHISEIESAENNSIVDVIGIV 256
F SE++ NSI DVIG++
Sbjct: 354 PKLINRFITRSELDDMPENSICDVIGML 381
>sp|Q6NZG4|NOXIN_MOUSE Nitric oxide-inducible gene protein OS=Mus musculus GN=Noxin PE=2
SV=1
Length = 898
Score = 35.0 bits (79), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 11/106 (10%)
Query: 405 AFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEID--ECDYRYLLQAQI 462
A + +++ +F Y +C ++C K+ R+ C +C D +YRY L ++
Sbjct: 10 ASVLAVQNSNFIYPSC------QRCFSKIILESKRFTCPKCGSSGDTGSTNYRYKLSLKV 63
Query: 463 QDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRS 508
+ + L ++T F + G A L+ L D ++ E + S
Sbjct: 64 AESSKLFFITVFGSCLDTFFGLTATGLHRY---LGDSIKNLETLDS 106
>sp|A7ZE07|MIAB_CAMC1 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Campylobacter concisus (strain 13826) GN=miaB PE=3
SV=1
Length = 433
Score = 33.9 bits (76), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Query: 461 QIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEI-----IRSRVFNQYL 515
QI D+T +T Q EIL E+ + + DV F E+ + R FN +L
Sbjct: 346 QIDDKTASERLTRLQNRHSEILD----EIVAAQKDKIFDVYFEELRANGGVAGRSFNNFL 401
Query: 516 FRLKIKEELYGDEQRVKIT 534
++ EEL G Q+ KIT
Sbjct: 402 VQVDGSEELLGTTQKAKIT 420
>sp|Q8C7X2|EMC1_MOUSE ER membrane protein complex subunit 1 OS=Mus musculus GN=Emc1 PE=1
SV=1
Length = 997
Score = 33.5 bits (75), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 9/119 (7%)
Query: 102 NHGPI--LKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLD 159
+HG + LKN A ++ A G + A +T + ++++ +A GDG V SF +
Sbjct: 307 HHGAVTLLKNFPQATLVSFAT----TGEKTVAAVMTCRTEVQKPVSA-GDGSVASFP--E 359
Query: 160 SDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTV 218
+ G + + CFN ++E GR L + S QK + ++FL+ +V
Sbjct: 360 TSGAQDSLACFNQTYTINLYLVETGRRLLDTSISFSLEQKGTRPEQLYIQVFLKKDDSV 418
>sp|Q5U528|GTPBA_XENLA GTP-binding protein 10 OS=Xenopus laevis GN=gtpbp10 PE=2 SV=1
Length = 383
Score = 33.1 bits (74), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 179 EIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHI 238
E+++ V ++K L A + L + E T +L + D+ +P++Q F+HI
Sbjct: 267 ELLDKPAVLAVNKMDLPNADEKLGELLKQLE-----NPTGNLHSLPDELVPERQIEFKHI 321
Query: 239 SEIESAENNSIVDVIGIV 256
+ +A + D+IG +
Sbjct: 322 VPVSAATGQGLEDLIGCI 339
>sp|P29535|1A14_SOLLC 1-aminocyclopropane-1-carboxylate synthase 4 OS=Solanum
lycopersicum GN=ACS4 PE=2 SV=1
Length = 476
Score = 32.7 bits (73), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 244 AENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSG 285
AEN VD+I I NP I +G+E+ RRI N +D G
Sbjct: 59 AENQLSVDLIEEWIKRNPKASICTNDGIESFRRIANFQDYHG 100
>sp|A8G741|RS13_PROM2 30S ribosomal protein S13 OS=Prochlorococcus marinus (strain MIT
9215) GN=rpsM PE=3 SV=1
Length = 121
Score = 32.3 bits (72), Expect = 8.9, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 257 ISVNPSVPILRKNGMETQRRILNLKDTS-----GRSVELTLWGDFCNKEGQKLQEMVDVG 311
I + S IL G+ R+ +L D+ G + E TL GD KEG L+ + D+G
Sbjct: 25 IGLTRSKLILANTGVNPDTRVKDLSDSDVQKLRGATEEFTLEGDLRRKEGMALKRLQDIG 84
>sp|A3PF27|RS13_PROM0 30S ribosomal protein S13 OS=Prochlorococcus marinus (strain MIT
9301) GN=rpsM PE=3 SV=1
Length = 121
Score = 32.3 bits (72), Expect = 8.9, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 257 ISVNPSVPILRKNGMETQRRILNLKDTS-----GRSVELTLWGDFCNKEGQKLQEMVDVG 311
I + S IL G+ R+ +L D+ G + E TL GD KEG L+ + D+G
Sbjct: 25 IGLTRSKLILANTGVNPDTRVKDLSDSDVQKLRGATEEFTLEGDLRRKEGMALKRLQDIG 84
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 218,327,258
Number of Sequences: 539616
Number of extensions: 9880823
Number of successful extensions: 25650
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 25492
Number of HSP's gapped (non-prelim): 88
length of query: 560
length of database: 191,569,459
effective HSP length: 123
effective length of query: 437
effective length of database: 125,196,691
effective search space: 54710953967
effective search space used: 54710953967
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)