Query 008606
Match_columns 560
No_of_seqs 220 out of 896
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 07:28:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008606.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008606hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gop_C Putative uncharacterize 100.0 3.1E-94 1.1E-98 778.8 49.7 433 114-558 2-444 (444)
2 1jmc_A Protein (replication pr 100.0 3.6E-53 1.2E-57 423.4 29.4 240 112-361 5-245 (246)
3 1l1o_C Replication protein A 7 100.0 1.7E-44 5.8E-49 344.0 21.5 176 377-558 3-179 (181)
4 3u50_C Telomerase-associated p 100.0 6.3E-40 2.2E-44 306.7 15.1 154 379-544 6-171 (172)
5 1ynx_A Replication factor-A pr 100.0 2.5E-30 8.5E-35 228.2 13.7 111 113-224 2-112 (114)
6 3dm3_A Replication factor A; p 99.4 1.7E-12 5.8E-17 112.1 11.0 98 113-222 3-101 (105)
7 1o7i_A SSB, SSO2364, single st 99.4 5.5E-12 1.9E-16 111.5 13.0 109 115-244 2-110 (119)
8 2k50_A Replication factor A re 99.3 7E-12 2.4E-16 110.0 12.7 105 231-346 3-109 (115)
9 1o7i_A SSB, SSO2364, single st 99.3 3.5E-12 1.2E-16 112.8 10.4 103 235-351 2-107 (119)
10 3e0e_A Replication protein A; 99.3 1E-11 3.6E-16 105.7 10.5 93 116-221 3-96 (97)
11 3dm3_A Replication factor A; p 99.2 4.1E-11 1.4E-15 103.4 11.2 93 234-340 4-98 (105)
12 2k50_A Replication factor A re 99.1 3E-10 1E-14 99.5 12.4 103 112-223 4-107 (115)
13 3e0e_A Replication protein A; 99.0 2E-09 7E-14 91.5 11.2 90 237-340 4-94 (97)
14 2k75_A Uncharacterized protein 99.0 3.2E-09 1.1E-13 91.7 10.6 93 114-223 2-95 (106)
15 2k75_A Uncharacterized protein 98.9 1.6E-08 5.4E-13 87.4 11.6 91 233-341 1-92 (106)
16 1wjj_A Hypothetical protein F2 98.8 6.1E-08 2.1E-12 88.0 12.8 99 112-222 13-121 (145)
17 1jmc_A Protein (replication pr 98.7 8.6E-07 2.9E-11 87.6 20.9 177 234-481 7-192 (246)
18 1xjv_A Protection of telomeres 98.6 3.3E-06 1.1E-10 85.8 22.1 229 111-357 2-289 (294)
19 1jb7_A Telomere-binding protei 98.6 3.9E-05 1.3E-09 83.0 28.7 342 110-491 33-453 (495)
20 1wjj_A Hypothetical protein F2 98.5 1.9E-07 6.6E-12 84.7 9.0 99 231-342 12-120 (145)
21 2kbn_A Conserved protein; nucl 98.5 1.2E-06 4E-11 75.9 12.8 92 114-222 4-95 (109)
22 2kbn_A Conserved protein; nucl 98.4 1.9E-06 6.6E-11 74.5 10.7 88 235-342 5-94 (109)
23 4gop_C Putative uncharacterize 98.4 1.1E-05 3.8E-10 86.6 18.3 177 235-482 3-188 (444)
24 1ynx_A Replication factor-A pr 98.2 1.2E-05 4E-10 70.1 11.1 101 234-344 3-111 (114)
25 1xjv_A Protection of telomeres 98.1 4E-05 1.4E-09 77.7 15.1 143 232-411 3-167 (294)
26 1qzg_A Protection of telomeres 97.7 0.0001 3.6E-09 69.2 9.7 89 233-329 27-120 (187)
27 3u58_A Tetrahymena TEB1 AB; te 97.6 0.0038 1.3E-07 54.9 16.7 160 114-299 10-173 (213)
28 1miu_A BRCA2, breast cancer ty 97.4 0.0028 9.7E-08 70.6 16.0 183 151-356 511-708 (738)
29 1jb7_A Telomere-binding protei 97.2 0.0033 1.1E-07 67.9 14.3 89 230-329 33-133 (495)
30 3u4v_A Telomerase-associated p 97.0 0.01 3.5E-07 47.7 11.3 90 114-214 14-105 (117)
31 3mxn_A RECQ-mediated genome in 95.3 0.039 1.3E-06 50.0 7.3 93 456-555 60-156 (157)
32 1se8_A Single-strand binding p 95.2 0.71 2.4E-05 46.5 17.1 179 125-328 5-212 (301)
33 2fxq_A Single-strand binding p 94.5 1 3.6E-05 44.3 16.1 176 125-327 5-207 (264)
34 4hik_A Protection of telomeres 94.2 0.37 1.3E-05 43.2 10.8 111 238-354 5-136 (143)
35 3ebe_A Protein MCM10 homolog; 93.7 0.45 1.5E-05 45.1 10.9 86 107-197 30-125 (200)
36 3kdf_D Replication protein A 3 92.3 0.44 1.5E-05 41.9 8.2 71 248-333 32-103 (132)
37 4gop_B Putative uncharacterize 92.1 0.4 1.4E-05 42.4 7.7 71 248-333 37-108 (136)
38 3u4z_A Telomerase-associated p 91.4 4.5 0.00015 32.1 12.8 87 121-223 8-95 (109)
39 1txy_A Primosomal replication 91.4 0.58 2E-05 39.4 7.6 66 125-193 2-78 (104)
40 3en2_A Probable primosomal rep 90.7 1.5 5.1E-05 36.8 9.4 66 125-194 2-78 (101)
41 3fhw_A Primosomal replication 90.6 2.1 7E-05 36.9 10.3 67 125-195 1-78 (115)
42 3ebe_A Protein MCM10 homolog; 90.2 0.47 1.6E-05 44.9 6.5 82 233-325 36-124 (200)
43 3koj_A Uncharacterized protein 89.8 1.4 4.7E-05 37.5 8.5 68 123-192 9-82 (108)
44 3eiv_A Single-stranded DNA-bin 89.8 1.5 5E-05 41.5 9.5 65 125-192 4-82 (199)
45 4gop_B Putative uncharacterize 89.3 1.2 4.1E-05 39.2 8.2 77 457-557 54-131 (136)
46 2vw9_A Single-stranded DNA bin 88.9 1.1 3.8E-05 39.5 7.6 66 125-193 2-79 (134)
47 4dni_A Fusion protein of RNA-e 88.2 20 0.00069 35.0 18.2 176 125-328 30-230 (257)
48 3kf6_A Protein STN1; OB fold, 88.2 6.1 0.00021 35.9 12.2 72 248-333 48-120 (159)
49 1qzg_A Protection of telomeres 88.2 0.75 2.6E-05 43.0 6.2 85 114-200 28-120 (187)
50 2pi2_A Replication protein A 3 87.4 1.5 5E-05 43.5 8.2 71 248-333 72-143 (270)
51 3i7f_A Aspartyl-tRNA synthetas 86.9 3.7 0.00012 44.7 11.5 99 113-221 48-153 (548)
52 3ulp_A Single-strand binding p 86.8 1.4 4.9E-05 38.1 6.9 65 125-192 6-84 (124)
53 1v1q_A Primosomal replication 86.6 1.7 6E-05 38.3 7.3 66 126-194 20-96 (134)
54 3vdy_A SSB, single-stranded DN 86.5 1.7 5.9E-05 37.1 7.1 67 124-193 4-80 (116)
55 3tqy_A Single-stranded DNA-bin 86.0 1.6 5.5E-05 39.6 7.0 67 124-193 7-86 (158)
56 1z9f_A Single-strand binding p 85.8 1.3 4.5E-05 40.0 6.3 67 123-192 14-92 (153)
57 3k8a_A Putative primosomal rep 85.4 5.5 0.00019 33.4 9.6 64 126-194 8-82 (103)
58 3kdf_D Replication protein A 3 85.2 4.4 0.00015 35.3 9.4 75 458-557 50-126 (132)
59 1eov_A ASPRS, aspartyl-tRNA sy 85.0 4.4 0.00015 43.5 11.0 99 113-221 21-130 (487)
60 3afp_A Single-stranded DNA-bin 84.6 2.2 7.4E-05 39.2 7.3 65 125-192 4-82 (168)
61 1qvc_A Single stranded DNA bin 83.0 2.3 7.8E-05 38.0 6.5 66 125-193 5-83 (145)
62 3u58_A Tetrahymena TEB1 AB; te 82.9 12 0.00042 32.8 10.7 85 121-221 126-211 (213)
63 4dam_A Single-stranded DNA-bin 79.7 2.6 8.8E-05 36.9 5.5 63 125-191 15-91 (128)
64 3rn5_A Interferon-inducible pr 78.7 43 0.0015 31.2 18.3 176 129-339 14-195 (208)
65 3m4p_A Ehasnrs, asparaginyl-tR 78.7 13 0.00045 39.4 11.7 100 113-222 17-123 (456)
66 2pi2_A Replication protein A 3 78.6 6.4 0.00022 38.7 8.7 75 458-557 90-166 (270)
67 3pgz_A Single-stranded DNA-bin 77.9 3.7 0.00013 38.5 6.3 65 125-192 26-104 (193)
68 3lgj_A Single-stranded DNA-bin 77.5 3.3 0.00011 38.0 5.8 65 125-192 23-101 (169)
69 1eqq_A Single stranded DNA bin 76.4 1.5 5.1E-05 40.7 3.1 66 125-193 6-84 (178)
70 3k7u_C MP18 RNA editing comple 75.8 11 0.00039 33.6 8.7 63 124-191 5-81 (148)
71 1se8_A Single-strand binding p 73.5 5.4 0.00018 40.0 6.6 66 124-193 128-205 (301)
72 3ull_A DNA binding protein; DN 72.7 4.7 0.00016 35.2 5.3 67 124-193 13-98 (132)
73 3f2b_A DNA-directed DNA polyme 71.4 8.8 0.0003 44.9 8.5 73 114-191 6-80 (1041)
74 1c0a_A Aspartyl tRNA synthetas 71.1 23 0.00077 38.9 11.4 95 117-221 5-105 (585)
75 1wyd_A Hypothetical aspartyl-t 70.3 16 0.00054 38.5 9.7 91 116-221 5-98 (429)
76 3nem_A Aspartyl-tRNA synthetas 69.9 22 0.00076 37.5 10.7 92 115-221 4-101 (438)
77 3koj_A Uncharacterized protein 69.9 29 0.001 29.2 9.4 74 247-328 11-90 (108)
78 1x54_A Asparaginyl-tRNA synthe 69.1 19 0.00065 37.9 10.0 91 116-221 5-101 (434)
79 3bju_A Lysyl-tRNA synthetase; 67.7 22 0.00075 38.4 10.3 79 126-221 56-141 (521)
80 1l0w_A Aspartyl-tRNA synthetas 67.0 26 0.00089 38.3 10.8 96 116-221 5-103 (580)
81 1n9w_A Aspartyl-tRNA synthetas 66.2 26 0.00089 36.7 10.3 83 117-221 4-88 (422)
82 2xgt_A Asparaginyl-tRNA synthe 64.4 23 0.0008 37.2 9.5 93 117-220 2-96 (435)
83 2xvs_A Tetratricopeptide repea 62.9 15 0.00052 33.4 6.6 76 112-197 60-136 (166)
84 4hik_A Protection of telomeres 61.9 7.7 0.00026 34.6 4.4 87 114-216 4-112 (143)
85 3k81_C MP18 RNA editing comple 61.7 14 0.00046 33.7 6.1 65 122-191 19-97 (164)
86 2fxq_A Single-strand binding p 61.4 12 0.0004 36.6 6.2 65 124-192 127-200 (264)
87 1ffk_W Ribosomal protein L37AE 61.1 4 0.00014 32.1 2.1 31 419-455 29-61 (73)
88 3cc2_Z 50S ribosomal protein L 60.6 3.4 0.00012 35.4 1.7 26 419-450 62-89 (116)
89 3eiv_A Single-stranded DNA-bin 60.3 38 0.0013 31.8 9.1 73 248-328 5-90 (199)
90 3en2_A Probable primosomal rep 59.8 74 0.0025 26.3 10.3 71 249-330 4-86 (101)
91 3jyw_9 60S ribosomal protein L 57.8 4.8 0.00017 31.5 2.0 26 419-450 28-55 (72)
92 1vq8_Z 50S ribosomal protein L 57.5 3.8 0.00013 33.1 1.4 26 419-450 29-56 (83)
93 4ex5_A Lysine--tRNA ligase; st 57.0 37 0.0013 36.7 9.5 79 126-221 87-169 (529)
94 1v1q_A Primosomal replication 54.4 55 0.0019 28.6 8.6 64 249-320 21-93 (134)
95 3izc_m 60S ribosomal protein R 54.3 5 0.00017 32.9 1.6 26 419-450 38-65 (92)
96 1txy_A Primosomal replication 53.0 52 0.0018 27.1 7.9 63 249-320 4-76 (104)
97 3k8a_A Putative primosomal rep 52.8 87 0.003 25.9 9.2 72 249-330 9-90 (103)
98 4dni_A Fusion protein of RNA-e 52.8 29 0.001 33.8 7.2 61 125-191 146-221 (257)
99 3j20_Y 30S ribosomal protein S 52.6 8.9 0.0003 27.8 2.6 26 417-448 19-46 (50)
100 3tqy_A Single-stranded DNA-bin 52.6 47 0.0016 29.7 8.1 71 249-327 10-92 (158)
101 2hpi_A DNA polymerase III alph 52.4 11 0.00039 44.8 4.9 76 236-324 1027-1106(1220)
102 3fhw_A Primosomal replication 52.4 50 0.0017 28.1 7.8 64 249-321 3-75 (115)
103 3j21_i 50S ribosomal protein L 50.8 5.1 0.00017 32.3 1.1 26 419-450 37-64 (83)
104 3a74_A Lysyl-tRNA synthetase; 49.5 60 0.0021 34.7 9.7 80 125-221 56-139 (493)
105 1e1o_A Lysyl-tRNA synthetase, 49.3 43 0.0015 35.9 8.6 80 125-221 64-148 (504)
106 2vw9_A Single-stranded DNA bin 48.4 54 0.0018 28.4 7.6 70 250-327 5-85 (134)
107 3au7_A TIAS, putative uncharac 47.9 49 0.0017 34.4 8.3 68 116-192 276-345 (402)
108 3vdy_A SSB, single-stranded DN 46.9 58 0.002 27.3 7.4 71 249-327 7-86 (116)
109 2jne_A Hypothetical protein YF 46.5 9.2 0.00031 31.6 2.0 26 418-449 33-58 (101)
110 3iz5_m 60S ribosomal protein L 46.4 6.8 0.00023 32.1 1.3 26 419-450 38-65 (92)
111 1gm5_A RECG; helicase, replica 45.7 11 0.00038 42.8 3.4 71 112-191 153-225 (780)
112 1pft_A TFIIB, PFTFIIBN; N-term 43.4 16 0.00054 26.0 2.7 27 418-450 6-35 (50)
113 3j21_g 50S ribosomal protein L 43.2 11 0.00038 27.5 1.8 24 417-448 14-37 (51)
114 4a17_Y RPL37A, 60S ribosomal p 42.3 7.8 0.00027 32.4 1.0 25 420-450 39-65 (103)
115 3ulp_A Single-strand binding p 42.2 1E+02 0.0034 26.2 8.3 73 249-329 8-93 (124)
116 2jrp_A Putative cytoplasmic pr 39.7 15 0.00051 29.4 2.3 20 428-447 7-26 (81)
117 2hpi_A DNA polymerase III alph 39.1 18 0.00063 43.0 3.9 74 116-195 1027-1106(1220)
118 3rlo_A Gamma-interferon-induci 38.2 2.5E+02 0.0085 26.1 18.1 175 129-339 11-192 (204)
119 1z9f_A Single-strand binding p 37.9 93 0.0032 27.6 7.6 72 248-327 17-99 (153)
120 2pk7_A Uncharacterized protein 37.5 13 0.00044 28.8 1.5 27 417-449 8-36 (69)
121 2js4_A UPF0434 protein BB2007; 36.6 13 0.00046 28.8 1.5 27 417-449 8-36 (70)
122 2jr6_A UPF0434 protein NMA0874 36.5 13 0.00045 28.7 1.4 27 417-449 8-36 (68)
123 2hf1_A Tetraacyldisaccharide-1 35.9 13 0.00045 28.7 1.4 29 415-449 6-36 (68)
124 2akl_A PHNA-like protein PA012 35.8 12 0.00042 32.5 1.2 28 417-450 27-55 (138)
125 3afp_A Single-stranded DNA-bin 34.9 1.3E+02 0.0043 27.1 8.1 73 248-328 5-90 (168)
126 2kpi_A Uncharacterized protein 34.4 19 0.00065 26.6 2.0 27 417-449 10-38 (56)
127 2k4x_A 30S ribosomal protein S 33.7 21 0.00071 26.3 2.0 25 418-448 19-45 (55)
128 2vv6_A FIXL, sensor protein FI 32.0 41 0.0014 26.7 3.9 31 460-492 6-36 (119)
129 3lgj_A Single-stranded DNA-bin 31.8 1.8E+02 0.006 26.3 8.5 72 249-328 25-109 (169)
130 4gs3_A Single-stranded DNA-bin 31.8 50 0.0017 27.7 4.4 64 126-195 12-79 (107)
131 2jny_A Uncharacterized BCR; st 30.7 18 0.00062 27.8 1.4 27 417-449 10-38 (67)
132 2oq0_A Gamma-interferon-induci 30.6 3.3E+02 0.011 25.3 18.3 176 129-339 17-199 (206)
133 3pgz_A Single-stranded DNA-bin 30.6 1.1E+02 0.0039 28.3 7.1 71 249-327 28-111 (193)
134 1qvc_A Single stranded DNA bin 29.7 1.4E+02 0.0049 26.0 7.4 71 249-327 7-89 (145)
135 3stb_C RNA-editing complex pro 29.4 1.3E+02 0.0043 26.8 6.8 62 125-191 44-115 (148)
136 3u6p_A Formamidopyrimidine-DNA 29.4 19 0.00064 35.5 1.6 24 418-447 246-273 (273)
137 1eqq_A Single stranded DNA bin 29.3 74 0.0025 29.1 5.5 71 249-327 8-90 (178)
138 1ee8_A MUTM (FPG) protein; bet 29.2 21 0.00072 35.0 1.9 27 415-447 229-263 (266)
139 2xzf_A Formamidopyrimidine-DNA 28.4 20 0.00069 35.2 1.6 27 415-447 236-270 (271)
140 1k82_A Formamidopyrimidine-DNA 28.2 20 0.00069 35.1 1.6 27 415-447 234-268 (268)
141 2cr8_A MDM4 protein; ZF-ranbp 28.0 16 0.00056 26.4 0.6 8 439-446 11-18 (53)
142 3cng_A Nudix hydrolase; struct 27.9 75 0.0026 28.6 5.4 46 418-471 4-55 (189)
143 1k3x_A Endonuclease VIII; hydr 27.9 21 0.00071 34.9 1.6 23 419-447 236-262 (262)
144 1wg2_A Zinc finger (AN1-like) 26.6 16 0.00055 27.9 0.4 23 418-449 16-38 (64)
145 3k7u_C MP18 RNA editing comple 26.2 3.3E+02 0.011 23.9 9.7 71 249-329 8-91 (148)
146 1wfh_A Zinc finger (AN1-like) 26.1 16 0.00054 27.9 0.3 23 418-449 16-38 (64)
147 1wfp_A Zinc finger (AN1-like) 26.1 16 0.00054 28.7 0.3 23 418-449 26-48 (74)
148 3w0f_A Endonuclease 8-like 3; 25.9 32 0.0011 34.1 2.5 25 419-449 253-283 (287)
149 4dka_C RNA-editing complex pro 25.9 2.1E+02 0.0071 23.8 7.0 61 126-191 4-71 (105)
150 1d06_A Nitrogen fixation regul 25.7 59 0.002 26.2 3.9 31 460-492 29-59 (130)
151 1l1o_C Replication protein A 7 24.8 58 0.002 29.7 4.0 26 151-177 79-104 (181)
152 3u50_C Telomerase-associated p 24.3 51 0.0018 30.1 3.4 29 151-180 75-103 (172)
153 4gs3_A Single-stranded DNA-bin 23.6 3E+02 0.01 22.8 7.8 63 248-320 12-76 (107)
154 2i5o_A DNA polymerase ETA; zin 23.3 28 0.00096 23.8 1.1 13 438-450 8-20 (39)
155 3kf6_A Protein STN1; OB fold, 23.3 3.1E+02 0.011 24.4 8.4 58 127-193 49-109 (159)
156 2jrp_A Putative cytoplasmic pr 22.7 49 0.0017 26.4 2.5 31 428-458 36-70 (81)
157 3mfx_A Sensory BOX/ggdef famil 22.3 67 0.0023 26.9 3.7 31 460-492 20-50 (129)
158 1tqz_A Necap1; endocytosis, st 21.9 77 0.0026 27.7 3.8 55 94-171 20-74 (133)
159 1ll8_A PAS kinase; PAS domain, 21.5 40 0.0014 26.5 2.0 31 460-492 11-42 (114)
160 4dam_A Single-stranded DNA-bin 21.5 2E+02 0.0069 24.6 6.6 34 287-326 64-98 (128)
161 1wfl_A Zinc finger protein 216 21.0 27 0.00091 27.4 0.7 23 418-449 26-48 (74)
162 3a0s_A Sensor protein; PAS-fol 20.3 88 0.003 22.3 3.6 31 460-492 5-35 (96)
No 1
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=100.00 E-value=3.1e-94 Score=778.84 Aligned_cols=433 Identities=39% Similarity=0.704 Sum_probs=402.4
Q ss_pred cceeccccCCCCCceEEEEEEEEecccceeccCCCCCcEEEEEEEeCCCCeEEEEEcchhHHHHHhhcccCcEEEEeeeE
Q 008606 114 RIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGS 193 (560)
Q Consensus 114 ~~~pI~~L~p~~~~w~Ik~RV~~k~~ir~~~n~~g~gkvf~~~L~D~~g~~I~at~~~~~~~kf~~~l~eG~vY~Is~~~ 193 (560)
+++||++|+|++++|+|+|||++||++|.|++++|+|++|+|+|+|+.| +|+|++|++++++|++.|++|+||+|++|.
T Consensus 2 ~~~~I~~L~p~~~~w~I~~rV~~k~~ir~~~~~~~~g~~~~~~L~De~G-~I~at~~~~~~~~f~~~l~eG~vy~Is~~~ 80 (444)
T 4gop_C 2 PIYPIEGLSPYQNRWTIKARVTSKSDIRHWSNQRGEGKLFSVNLLDDSG-EIKATGFNDAVDRFYPLLQENHVYLISKAR 80 (444)
T ss_dssp -CCCSTTCCTTCCSCEEEEECCEECCCEEEECSSCEEEEEEEEEECSSC-EEEEEEETHHHHHHTTTCCTTCEEEEESCE
T ss_pred CceeHHHCCCCCcceEEEEEEEEccCcceecCCCCCceEEEEEEEcCCC-EEEEEEeHHHHHHHHHheecCCEEEEcCCE
Confidence 5899999999999999999999999999999998899999999999777 999999999999999999999999999999
Q ss_pred EecCCCccccCCCeeEEEEcccceEEeccCCCCCCCcccccccCccchhcccCCceeEEEEEEEEecCceeEeec-cCce
Q 008606 194 LKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRK-NGME 272 (560)
Q Consensus 194 V~~a~~~y~~~~~~yeI~f~~~T~I~~~~d~~~~iP~~~f~f~~i~dI~~~~~~~~VDVIGvV~~V~~~~~i~~k-~G~~ 272 (560)
|++++++|++++|+|||.|+.+|+|+++++ +..||...|+|++|++|.+...+.+|||||+|++|+++++|++| +|++
T Consensus 81 V~~~~~~y~~~~~~~ei~~~~~T~V~~~~d-~~~iP~~~~~f~~i~~i~~~~~~~~vDViG~V~~v~~~~~i~~k~~g~~ 159 (444)
T 4gop_C 81 VNIAKKQFSNLQNEYEITFENSTEIEECTD-ATDVPEVKYEFVRINELESVEANQQCDVIGILDSYGELSEIVSKASQRP 159 (444)
T ss_dssp EEECCGGGCSCCCSEEEEECTTCEEEECSC-CSSSCCCCCCBCCGGGGGGSCSSCCCBEEEEEEEECCCEEECCTTTCSC
T ss_pred EEecCCccccCCCCEEEEEcCCcEEEEccC-cccCcceeecccCHHHHhccCCCCceEEEEEEEEcCCcEEEEEccCCce
Confidence 999999999999999999999999999975 45799999999999999998889999999999999999999988 7888
Q ss_pred eeEEEEEEecCCCcEEEEEEeCcchhhhhhhHHhhhccCCccEEEEEEEEEecCCCceecccCCeEEEECCChHHHHHHH
Q 008606 273 TQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHELR 352 (560)
Q Consensus 273 ~~kr~i~L~D~Sg~~I~vtLWg~~a~~~~~~l~~~~~~~~~~VV~l~~~rV~~f~G~sLs~~~~S~i~iNPdipEa~~L~ 352 (560)
..+|+|+|.|+||.+|+|||||++|..|... .+ .+.++||+|+++||++|+|++||+.++|+|++|||+||+.+|+
T Consensus 160 ~~kr~i~L~D~sg~~i~~tLWg~~A~~f~~~---~~-~~~~~VV~i~~~kV~~f~G~~ls~~~~s~i~inPdipea~~l~ 235 (444)
T 4gop_C 160 VQKRELTLVDQGNRSVKLTLWGKTAETFPTN---AG-VDEKPVLAFKGVKVGDFGGRSLSMFSSSTMLINPDITESHVLR 235 (444)
T ss_dssp EEEEEEEEECTTCBEEEEEEEHHHHHTSTTS---TT-SSSCCEEEEESCEEECTTSSEEECCTTCEEEESCSSHHHHHHH
T ss_pred eeEEEEEEEeCCCCEEEEEEEhhhhhhhhhh---hc-cCCCCEEEEEeEEEeecCCeEEeccccceEEECCCCHHHHHHH
Confidence 9999999999999999999999999886431 11 3578999999999999999999999999999999999999999
Q ss_pred HHHhcCCCccceeeccccc------c--cCCCccchhhhHHHHhhcCCCCCCCCceEEEEEEEEEEeCCCeEEeCCCCCc
Q 008606 353 EWFDSGGKNAATVSISREI------A--AGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMI 424 (560)
Q Consensus 353 ~w~~~~g~~~~~~sls~~~------~--~~~~~~~~~ktI~~I~~~~~g~~e~~~~~~v~atI~~I~~d~~~Y~aC~~~~ 424 (560)
.||++.|.+..+.+++... + ..+.+...+|||+||+++.+|.+++++||.|+|+|+.|+.++|||+|||.+
T Consensus 236 ~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kti~~i~~~~~g~~~~~~~~~v~atI~~i~~~~~~Y~aC~~~- 314 (444)
T 4gop_C 236 GWYDNDGAHAQFQPYTNGGVGGGAMGGGGAGANMAERRTIVQVKDENLGMSEKPDYFNVRATVVYIKQENLYYTACASE- 314 (444)
T ss_dssp HHHHHHTTTSCCBCCCCCC---------CTTCCSSEECCHHHHHHTTTTSSSSCEEEEEEEEEEEECCTTCEEEECCST-
T ss_pred HHHHcCCCCcccccccccccccccccccccccccccceeHHHHhhhccCCCCCCcEEEEEEEEEEEcCCceEEccCCcc-
Confidence 9999999888888876543 1 122356789999999999999999999999999999999999999999921
Q ss_pred CccccCceeeecCC-eeecCcCCCccCCceeEEEEEEEEEeCCCeEEEEEehhhhhhhcCCCHHHHHHhhhccCChhHHH
Q 008606 425 GDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFG 503 (560)
Q Consensus 425 ~~~~C~KKv~~~~~-~~~C~kC~~~~~~~~~rY~l~~~i~D~Tgs~~~~~Fd~~ae~llG~sA~el~~~~~e~~d~~~~~ 503 (560)
.|+|||...++ .|+|++|++..++|.|||+|++.|+||||++|+++||+.|++|||++|+||.+++ ++|+..++
T Consensus 315 ---~C~kkv~~~~~g~~~C~~C~~~~~~~~~ry~l~~~v~D~Tg~~~~~~F~~~a~~llG~sa~el~~~~--~~d~~~~~ 389 (444)
T 4gop_C 315 ---GCNKKVNLDHENNWRCEKCDRSYATPEYRYILSTNVADATGQMWLSGFNEDATQLIGMSAGELHKLR--EESESEFS 389 (444)
T ss_dssp ---TCCCBEEECTTSCEEETTTTEEESSCEEEECEEEEEEETTEEEEEEECHHHHHHHTTSCHHHHHHHH--TTCHHHHH
T ss_pred ---cCCCccccCCCccEECCCCCCcCccccEEEEEEEEEEeCCCCEEEEEehHHHHHHcCCCHHHHHHHH--hcChHHHH
Confidence 39999987654 8999999999889999999999999999999999999999999999999999998 67899999
Q ss_pred HHHHHhcCCeEEEEEEEeeeecCCeeeEEEEEEEeeeCChHHHHHHHHHHHHhhh
Q 008606 504 EIIRSRVFNQYLFRLKIKEELYGDEQRVKITVIRADQVNYSSESRYLLDLISKSF 558 (560)
Q Consensus 504 ~~l~~~~~k~~~fkvkvk~e~y~~e~r~k~~v~~~~~vd~~~e~~~ll~~i~~~~ 558 (560)
++|++++|++|+|+|+++.++|+|+.|+|++|++++|+||++|+++||++|++|+
T Consensus 390 ~~~~~~~~k~~~f~~~~k~~~y~~~~r~~~~v~~~~~~d~~~~~~~l~~~i~~~~ 444 (444)
T 4gop_C 390 AALHRAANRMYMFNCRAKMDTFNDTARVRYTISRAAPVDFAKAGMELVDAIRAYM 444 (444)
T ss_dssp HHHHTTSSCEEEEEEEEEEEEETTEEEEEEEEEEEEECCHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhCcEEEEEEEEEeeeeCCeeEEEEEEEEeeeCCHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999984
No 2
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=100.00 E-value=3.6e-53 Score=423.39 Aligned_cols=240 Identities=43% Similarity=0.796 Sum_probs=225.7
Q ss_pred CCcceeccccCCCCCceEEEEEEEEecccceeccCCCCCcEEEEEEEeCCCCeEEEEEcchhHHHHHhhcccCcEEEEee
Q 008606 112 PARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISK 191 (560)
Q Consensus 112 ~~~~~pI~~L~p~~~~w~Ik~RV~~k~~ir~~~n~~g~gkvf~~~L~D~~g~~I~at~~~~~~~kf~~~l~eG~vY~Is~ 191 (560)
++.++||++|+|++++|+|+|||++||++|.|.+++++|++|+|+|+|++| +|+|++|++++++|++.|++|+||+|++
T Consensus 5 ~~~~~~I~~L~p~~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G-~I~at~~~~~~~~~~~~l~~G~vy~i~~ 83 (246)
T 1jmc_A 5 QSKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESG-EIRATAFNEQVDKFFPLIEVNKVYYFSK 83 (246)
T ss_dssp --CBCCGGGCCTTCCCCEEEEEEEEECCCEEEECSSCEEEEEEEEEECSSC-EEEEEEEHHHHHHHGGGCCTTCEEEEEC
T ss_pred ccceEEHHHCCCCCCceEEEEEEEEecccceeeCCCCCceEEEEEEECCCC-eEEEEEChHHHHHhhhhcccCCEEEECC
Confidence 568999999999999999999999999999999988999999999999988 9999999999999999999999999999
Q ss_pred eEEecCCCccccCCCeeEEEEcccceEEeccCCCCCCCcccccccCccchhcccCCceeEEEEEEEEecCceeEeec-cC
Q 008606 192 GSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRK-NG 270 (560)
Q Consensus 192 ~~V~~a~~~y~~~~~~yeI~f~~~T~I~~~~d~~~~iP~~~f~f~~i~dI~~~~~~~~VDVIGvV~~V~~~~~i~~k-~G 270 (560)
|.|++++++|++++|+|||.|+.+|+|++|++ ..++|...|+|++|++|.++..+.+|||||+|++|++++++++| +|
T Consensus 84 ~~v~~~~~~y~~~~~~~ei~~~~~T~I~~~~~-~~~iP~~~~~f~~i~~i~~~~~~~~vDViG~V~~v~~~~~~~~k~~g 162 (246)
T 1jmc_A 84 GTLKIANKQFTAVKNDYEMTFNNETSVMPCED-DHHLPTVQFDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNN 162 (246)
T ss_dssp CEEEECCGGGCCCCCSEEEECCTTCEEEECCS-CSCCCCCCCCBCCGGGGGGSCTTCEEEEEEEEEEECCCEEEEETTTT
T ss_pred CEEEEcccCcccCCCCEEEEEcCCcEEEEccC-cccCCcceeeeEEHHHHhcccCCCceeEEEEEEEecCeEEEEEecCC
Confidence 99999999999999999999999999999975 45799999999999999987788999999999999999999988 79
Q ss_pred ceeeEEEEEEecCCCcEEEEEEeCcchhhhhhhHHhhhccCCccEEEEEEEEEecCCCceecccCCeEEEECCChHHHHH
Q 008606 271 METQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGKSIGTIPSTQLFINPDFAEAHE 350 (560)
Q Consensus 271 ~~~~kr~i~L~D~Sg~~I~vtLWg~~a~~~~~~l~~~~~~~~~~VV~l~~~rV~~f~G~sLs~~~~S~i~iNPdipEa~~ 350 (560)
++..+|+|.|.|+||.+|+|||||++|..+ +...++||+|+++||++|+|++|++.++|+|++|||+|||++
T Consensus 163 ~~~~~r~~~l~D~sg~~i~~tLWg~~a~~~--------~~~~~~vv~i~~~~v~~f~g~~ls~~~~s~i~inpd~pe~~~ 234 (246)
T 1jmc_A 163 REVAKRNIYLMDTSGKVVTATLWGEDADKF--------DGSRQPVLAIKGARVSDFGGRSLSVLSSSTIIANPDIPEAYK 234 (246)
T ss_dssp EEEEEEEEEEECTTCCEEEEEEEHHHHHHC--------CCTTCCEEEEEEEEEECTTSSEEECCSSCEEESSCCSHHHHH
T ss_pred CccEEEEEEEECCCCCEEEEEEEchhhhhc--------ccCCCCEEEEEEEEEEecCCeEEEecCcceEEECCCCHHHHH
Confidence 999999999999999999999999998864 345789999999999999889999999999999999999999
Q ss_pred HHHHHhcCCCc
Q 008606 351 LREWFDSGGKN 361 (560)
Q Consensus 351 L~~w~~~~g~~ 361 (560)
|+.||++.|.+
T Consensus 235 l~~w~~~~g~~ 245 (246)
T 1jmc_A 235 LRGWFDAEGQA 245 (246)
T ss_dssp HHHHHHHTTC-
T ss_pred HHHHHHhcCCc
Confidence 99999998864
No 3
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=100.00 E-value=1.7e-44 Score=344.01 Aligned_cols=176 Identities=36% Similarity=0.656 Sum_probs=161.8
Q ss_pred ccchhhhHHHHhhcCCCCCCCCceEEEEEEEEEEeCCCeEEeCCCCCcCccccCceeeecC-CeeecCcCCCccCCceeE
Q 008606 377 KNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSG-NRWQCDRCNQEIDECDYR 455 (560)
Q Consensus 377 ~~~~~ktI~~I~~~~~g~~e~~~~~~v~atI~~I~~d~~~Y~aC~~~~~~~~C~KKv~~~~-~~~~C~kC~~~~~~~~~r 455 (560)
++..+|||+||+++.+|.+++|+||+|+|+|++|+.++|||+|||++ .|+|||+..+ +.|+|++|++++++|.||
T Consensus 3 ~~~~~kti~qi~~~~lg~~~k~~~f~v~atI~~i~~d~~~Y~aC~~~----~CnKKv~~~~~g~~~CekC~~~~~~~~~r 78 (181)
T 1l1o_C 3 SNTNWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPTQ----DCNKKVIDQQNGLYRCEKCDTEFPNFKYR 78 (181)
T ss_dssp -CCCBCCHHHHHHHTTTSSSSCEEEEEEEEEEEECCSTTEEEBCCST----TCCCBCEEETTTEEEETTTTEEESSCCEE
T ss_pred CccceEEHHHHhhhccCCCCCCcEEEEEEEEEEEeCCCEEECCCCch----hcCCccccCCCCeEECCCCCCcCCCceEE
Confidence 56789999999999999999999999999999999999999999932 3999999755 489999999999999999
Q ss_pred EEEEEEEEeCCCeEEEEEehhhhhhhcCCCHHHHHHhhhccCChhHHHHHHHHhcCCeEEEEEEEeeeecCCeeeEEEEE
Q 008606 456 YLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITV 535 (560)
Q Consensus 456 Y~l~~~i~D~Tgs~~~~~Fd~~ae~llG~sA~el~~~~~e~~d~~~~~~~l~~~~~k~~~fkvkvk~e~y~~e~r~k~~v 535 (560)
|+|++.|+||||++|+++||+.|++|||+||+||.++. ++++..++++|.+++|++|.|+|+++.++|+++.|++++|
T Consensus 79 y~l~~~i~D~Tg~~~~t~F~~~ae~ilG~sA~el~~l~--e~~~~~~~~~~~~~~~~~~~f~l~vk~e~yn~e~r~~~~v 156 (181)
T 1l1o_C 79 MILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELK--DKNEQAFEEVFQNANFRSFIFRVRVKVETYNDESRIKATV 156 (181)
T ss_dssp EEEEEEEECSSCEEEEEEEHHHHHHHHSSCHHHHHHHT--TSCHHHHHHHHHHTTTCEEEEEEEEECCCC-----CEEEE
T ss_pred EEEEEEEEeCCCCEEEEEEhHHHHHHhCCCHHHHHHHH--hhChHHHHHHHHHhcCceEEEEEEEEEeecCCEEEEEEEE
Confidence 99999999999999999999999999999999999998 6789999999999999999999999999999999999999
Q ss_pred EEeeeCChHHHHHHHHHHHHhhh
Q 008606 536 IRADQVNYSSESRYLLDLISKSF 558 (560)
Q Consensus 536 ~~~~~vd~~~e~~~ll~~i~~~~ 558 (560)
++++|+||++|+++|++.|++|.
T Consensus 157 ~~~~~vd~~~e~~~L~~~i~~~~ 179 (181)
T 1l1o_C 157 MDVKPVDYREYGRRLVMSIRRSA 179 (181)
T ss_dssp EEEEECCHHHHHHHHHHHHHHHH
T ss_pred EEeeeCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999985
No 4
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=100.00 E-value=6.3e-40 Score=306.73 Aligned_cols=154 Identities=18% Similarity=0.368 Sum_probs=136.9
Q ss_pred chhhhHHHHhhcCCCCCCCCceEEEEEEEEEEeCC-CeEEeCCCCCcCccccCceeee-cCCeeecCcCCCccCCceeEE
Q 008606 379 EIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIKSD-SFCYTACPLMIGDRQCNKKVTQ-SGNRWQCDRCNQEIDECDYRY 456 (560)
Q Consensus 379 ~~~ktI~~I~~~~~g~~e~~~~~~v~atI~~I~~d-~~~Y~aC~~~~~~~~C~KKv~~-~~~~~~C~kC~~~~~~~~~rY 456 (560)
..++||+|++++.||.+++ || |+|+|+.|+.+ +|||+||| .|+|||+. .++.|+|++|++. ++|.|||
T Consensus 6 ~i~~~i~~~~~e~lG~~~~--~f-v~atI~~Ik~d~~~~Y~ACp------~CnKKV~~~~~g~~~CekC~~~-~~~~~RY 75 (172)
T 3u50_C 6 SIEEIIQQAQASEIGQKKE--FY-VYGNLVSIQMKNKLYYYRCT------CQGKSVLKYHGDSFFCESCQQF-INPQVHL 75 (172)
T ss_dssp CHHHHHHHHHTCCTTCEEE--EE-EEEEEECCCCSSCCEEEECT------TSCCCEEEETTTEEEETTTTEE-CCCEEEE
T ss_pred HHHHHHHHHHHhhCCCCCC--EE-EEEEEEEEcCCCcEEehhch------hhCCEeeeCCCCeEECCCCCCC-CCceEEE
Confidence 4689999999999999877 88 99999999999 89999999 89999994 4559999999999 8999999
Q ss_pred EEEEEEEeCCCeEEEEEehhhhhhhcCC-C-------HHHH-HHhhhccCC-hhHHHHHHHHhcCCeEEEEEEEeeeecC
Q 008606 457 LLQAQIQDQTGLTWVTAFQESGEEILGC-P-------AKEL-YMLKYELQD-DVRFGEIIRSRVFNQYLFRLKIKEELYG 526 (560)
Q Consensus 457 ~l~~~i~D~Tgs~~~~~Fd~~ae~llG~-s-------A~el-~~~~~e~~d-~~~~~~~l~~~~~k~~~fkvkvk~e~y~ 526 (560)
+|++.|+|+||++|+++||+.|++|||+ + |+|| .+++ +++ +..+++++.++.|++|.|+|+++.++||
T Consensus 76 il~~~i~D~TG~~wvt~F~e~ae~ilG~~~~~~~~~~A~eL~~~l~--e~~~~~~~~~~~~~~~~k~~~frlr~k~e~yn 153 (172)
T 3u50_C 76 MLRAFVQDSTGTIPVMIFDQQSSQLINQIDPSIHVQEAGQYVKNCI--ENGQEEIIRQLFSKLDFARFIFEIQFENKEFN 153 (172)
T ss_dssp CEEEEEEETTEEEEEEECHHHHHHHHHHHCTTSCGGGHHHHHHHHH--TTTCHHHHHHHHHTTTTCEEEEEEEEEECC--
T ss_pred EEEEEEEeCCCCEEEEEEhHHHHHHhCCCCCccchhhHHHHHHHHH--hcCcHHHHHHHHHhhcCcEEEEEEEEEEcccC
Confidence 9999999999999999999999999999 9 9999 8888 444 8899999999999999999999999999
Q ss_pred CeeeEEEEEEEeeeCChH
Q 008606 527 DEQRVKITVIRADQVNYS 544 (560)
Q Consensus 527 ~e~r~k~~v~~~~~vd~~ 544 (560)
||.|+||+|++++|+||.
T Consensus 154 de~Rvr~tv~~~~p~~~~ 171 (172)
T 3u50_C 154 NEQEIAYKVLKIEKENIK 171 (172)
T ss_dssp ----EEEEEEEEEEC---
T ss_pred CEeEEEEEEEEeeecCcC
Confidence 999999999999999995
No 5
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.5e-30 Score=228.17 Aligned_cols=111 Identities=42% Similarity=0.849 Sum_probs=107.5
Q ss_pred CcceeccccCCCCCceEEEEEEEEecccceeccCCCCCcEEEEEEEeCCCCeEEEEEcchhHHHHHhhcccCcEEEEeee
Q 008606 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKG 192 (560)
Q Consensus 113 ~~~~pI~~L~p~~~~w~Ik~RV~~k~~ir~~~n~~g~gkvf~~~L~D~~g~~I~at~~~~~~~kf~~~l~eG~vY~Is~~ 192 (560)
+.++||++|+|++++|+|+|||++||++|.|++++|+|++|+|+|+|++| +|+|++|++++++|++.|+||+||+|++|
T Consensus 2 ~~~~~Is~L~p~~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G-~I~at~~~~~~~~f~~~l~eG~vy~Is~~ 80 (114)
T 1ynx_A 2 RPIFAIEQLSPYQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDTSG-EIRATAFNDFATKFNEILQEGKVYYVSKA 80 (114)
T ss_dssp CCBCCGGGCCTTTCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEEETTE-EEEEEECHHHHHHHHHHSCSSSEEEEESC
T ss_pred CceEEHHHCCCCCCceEEEEEEEEeccceEEecCCCCceEEEEEEECCCC-eEEEEECHHHHHHHHhhcccCcEEEECCc
Confidence 47899999999999999999999999999999999999999999999988 99999999999999999999999999999
Q ss_pred EEecCCCccccCCCeeEEEEcccceEEeccCC
Q 008606 193 SLKPAQKNFNHLKNEWEIFLEATSTVDLCTEE 224 (560)
Q Consensus 193 ~V~~a~~~y~~~~~~yeI~f~~~T~I~~~~d~ 224 (560)
.|++++++|++++|+|||.|+.+|+|++|.|+
T Consensus 81 ~V~~a~~~y~~~~~~yei~f~~~T~I~~~~d~ 112 (114)
T 1ynx_A 81 KLQPAKPQFTNLTHPYELNLDRDTVIEECFDE 112 (114)
T ss_dssp EEEECCTTTSSSSSCEEEEECSSCEEEESCCC
T ss_pred EEEECCCCcccCCCCEEEEECCCCEEEECCCC
Confidence 99999999999999999999999999999753
No 6
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=99.39 E-value=1.7e-12 Score=112.15 Aligned_cols=98 Identities=20% Similarity=0.252 Sum_probs=86.7
Q ss_pred CcceeccccCCCCCceEEEEEEEEecccceeccCCC-CCcEEEEEEEeCCCCeEEEEEcchhHHHHHhhcccCcEEEEee
Q 008606 113 ARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARG-DGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISK 191 (560)
Q Consensus 113 ~~~~pI~~L~p~~~~w~Ik~RV~~k~~ir~~~n~~g-~gkvf~~~L~D~~g~~I~at~~~~~~~kf~~~l~eG~vY~Is~ 191 (560)
..++||++|.|+ .+|.|.|||+.++++|.|.+..| +++++++.|.|+ .|.|++++|++.++. .|++|++|.| +
T Consensus 3 ~~~~~I~dL~~~-~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D~-TG~IrvtlW~~~a~~---~l~~Gdvv~i-~ 76 (105)
T 3dm3_A 3 KDTYNIGELSPG-MTATFEGEVISALPIKEFKRADGSIGKLKSFIVRDE-TGSIRVTLWDNLTDI---DVGRGDYVRV-R 76 (105)
T ss_dssp -CEECGGGCCSS-EEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEET-TEEEEEEEEGGGGGS---CCCTTCEEEE-E
T ss_pred ccceEHHHCCCC-CeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECC-CCcEEEEEECccccc---ccCCCCEEEE-E
Confidence 468999999999 79999999999999999987666 478999999995 559999999998876 7999999999 9
Q ss_pred eEEecCCCccccCCCeeEEEEcccceEEecc
Q 008606 192 GSLKPAQKNFNHLKNEWEIFLEATSTVDLCT 222 (560)
Q Consensus 192 ~~V~~a~~~y~~~~~~yeI~f~~~T~I~~~~ 222 (560)
+.|+... .+.++|.+...|.|+++.
T Consensus 77 g~vk~~~------~g~~eL~~g~~~~i~~~~ 101 (105)
T 3dm3_A 77 GYIREGY------YGGLECTANYVEILKKGE 101 (105)
T ss_dssp EEEEECT------TSSEEEEEEEEEEEECCC
T ss_pred EEEEEcc------CCCEEEEeCCceEEEecc
Confidence 9998764 357999999999999985
No 7
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=99.36 E-value=5.5e-12 Score=111.52 Aligned_cols=109 Identities=17% Similarity=0.207 Sum_probs=92.8
Q ss_pred ceeccccCCCCCceEEEEEEEEecccceeccCCCCCcEEEEEEEeCCCCeEEEEEcchhHHHHHhhcccCcEEEEeeeEE
Q 008606 115 IIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSL 194 (560)
Q Consensus 115 ~~pI~~L~p~~~~w~Ik~RV~~k~~ir~~~n~~g~gkvf~~~L~D~~g~~I~at~~~~~~~kf~~~l~eG~vY~Is~~~V 194 (560)
+++|++|.|+...|.+.++|+.++++|.+.+++|.++++++.|.| +.|+|++++|++.++ .|++|++|.|+++.|
T Consensus 2 f~~I~dL~~~~~~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~D-~TG~I~~tlW~~~~~----~~~~G~vv~i~~g~v 76 (119)
T 1o7i_A 2 EEKVGNLKPNMESVNVTVRVLEASEARQIQTKNGVRTISEAIVGD-ETGRVKLTLWGKHAG----SIKEGQVVKIENAWT 76 (119)
T ss_dssp BCCGGGCCTTCSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEE-TTEEEEEEEEGGGTT----CCCTTCEEEEEEEEE
T ss_pred cEEHHHCcCCCCcEEEEEEEEECCCCeeEEecCCCEEEEEEEEEe-CCCEEEEEEECChhh----cCCCCCEEEEEeEEE
Confidence 578999999988999999999999999987776666899999999 556799999999874 589999999999998
Q ss_pred ecCCCccccCCCeeEEEEcccceEEeccCCCCCCCcccccccCccchhcc
Q 008606 195 KPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESA 244 (560)
Q Consensus 195 ~~a~~~y~~~~~~yeI~f~~~T~I~~~~d~~~~iP~~~f~f~~i~dI~~~ 244 (560)
... .+.++|.+...+.|+.+++ ++|..+++|...
T Consensus 77 ~~~-------~g~~qL~i~~~~~i~~~~~---------~~~~~~~~l~~~ 110 (119)
T 1o7i_A 77 TAF-------KGQVQLNAGSKTKIAEASE---------DGFPESSQIPEN 110 (119)
T ss_dssp EEE-------TTEEEEEECTTCEEEECCC---------TTCCCGGGSCCC
T ss_pred EEe-------CCEEEEEECCCEEEEEcCC---------cCCCcHHHhhhc
Confidence 753 4679999999999999852 456677777653
No 8
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=99.35 E-value=7e-12 Score=109.99 Aligned_cols=105 Identities=15% Similarity=0.282 Sum_probs=90.4
Q ss_pred ccccccCccchhcccCCceeEEEEEEEEecCceeEeeccCceeeEEEEEEecCCCcEEEEEEeCcchhhhhhhHHhhhcc
Q 008606 231 QQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDV 310 (560)
Q Consensus 231 ~~f~f~~i~dI~~~~~~~~VDVIGvV~~V~~~~~i~~k~G~~~~kr~i~L~D~Sg~~I~vtLWg~~a~~~~~~l~~~~~~ 310 (560)
..|+|++|++|. .+..+|++|+|++++++.++++|+|++..++++.|.|.|| +|++|||++.+..+ ..+
T Consensus 3 ~~~~~~~I~~L~---~g~~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~TG-~I~~t~w~~~~~~~-----~~l-- 71 (115)
T 2k50_A 3 PEHRMDTISKLE---EGAETPVTGRVMKISSPRTFTTRKGREGKLANVIIADDTG-ELRAVFWTENIKLL-----KKF-- 71 (115)
T ss_dssp CTTCCCCTTTCC---TTCEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEETTE-EEEEEEETTGGGGG-----GTC--
T ss_pred cccceEEHHHCC---CCCEeEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeCCC-eEEEEEeCchhhhh-----hcC--
Confidence 357888998886 4778999999999999998888888777899999999999 99999999987642 112
Q ss_pred CCccEEEEEEEEEec-CCCc-eecccCCeEEEECCChH
Q 008606 311 GFFPVLSVKSGKVND-FSGK-SIGTIPSTQLFINPDFA 346 (560)
Q Consensus 311 ~~~~VV~l~~~rV~~-f~G~-sLs~~~~S~i~iNPdip 346 (560)
..+++|.|++++|++ |+|+ +|+....|.+..+||+.
T Consensus 72 ~~G~vv~i~g~~v~~~f~g~~qL~~~~~~~i~~~~~~~ 109 (115)
T 2k50_A 72 REGDVIRIKDVNIRGGFGGRKEAHLMPRSTVEVLDPLE 109 (115)
T ss_dssp CTTSEEEEEEEEECCCSSSSCEEEECTTCCEEEESSCC
T ss_pred CCCCEEEEEeeEEccccCCeEEEEECCCceEEECCccc
Confidence 468999999999987 9986 89999999999999874
No 9
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=99.34 E-value=3.5e-12 Score=112.80 Aligned_cols=103 Identities=21% Similarity=0.347 Sum_probs=86.9
Q ss_pred ccCccchhcccCCceeEEEEEEEEecCceeEeeccCceeeEEEEEEecCCCcEEEEEEeCcchhhhhhhHHhhhccCCcc
Q 008606 235 FRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFP 314 (560)
Q Consensus 235 f~~i~dI~~~~~~~~VDVIGvV~~V~~~~~i~~k~G~~~~kr~i~L~D~Sg~~I~vtLWg~~a~~~~~~l~~~~~~~~~~ 314 (560)
|++|+||.. ....||++|+|++++++..+++|+|+ ..++++.|.|+|| +|++|||++.|.. + ..++
T Consensus 2 f~~I~dL~~--~~~~v~~~~~V~~~~~~~~~~~k~G~-~~~~~~~l~D~TG-~I~~tlW~~~~~~--------~--~~G~ 67 (119)
T 1o7i_A 2 EEKVGNLKP--NMESVNVTVRVLEASEARQIQTKNGV-RTISEAIVGDETG-RVKLTLWGKHAGS--------I--KEGQ 67 (119)
T ss_dssp BCCGGGCCT--TCSSEEEEEEEEEECCCEEECCTTCC-EEEEEEEEEETTE-EEEEEEEGGGTTC--------C--CTTC
T ss_pred cEEHHHCcC--CCCcEEEEEEEEECCCCeeEEecCCC-EEEEEEEEEeCCC-EEEEEEECChhhc--------C--CCCC
Confidence 678888864 33479999999999999998889887 7899999999999 5999999999753 2 3689
Q ss_pred EEEEEEEEEecCCCc-eecccCCeEEEECC--ChHHHHHH
Q 008606 315 VLSVKSGKVNDFSGK-SIGTIPSTQLFINP--DFAEAHEL 351 (560)
Q Consensus 315 VV~l~~~rV~~f~G~-sLs~~~~S~i~iNP--dipEa~~L 351 (560)
||.|++++|++|+|+ +|+....|.|..++ ++|++.+|
T Consensus 68 vv~i~~g~v~~~~g~~qL~i~~~~~i~~~~~~~~~~~~~l 107 (119)
T 1o7i_A 68 VVKIENAWTTAFKGQVQLNAGSKTKIAEASEDGFPESSQI 107 (119)
T ss_dssp EEEEEEEEEEEETTEEEEEECTTCEEEECCCTTCCCGGGS
T ss_pred EEEEEeEEEEEeCCEEEEEECCCEEEEEcCCcCCCcHHHh
Confidence 999999999999996 89999999999877 45555444
No 10
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=99.30 E-value=1e-11 Score=105.72 Aligned_cols=93 Identities=25% Similarity=0.330 Sum_probs=78.5
Q ss_pred eeccccCCCCCceEEEEEEEEecccceeccCCC-CCcEEEEEEEeCCCCeEEEEEcchhHHHHHhhcccCcEEEEeeeEE
Q 008606 116 IPIAALNPYQGRWAIKARVTAKGDLRRYNNARG-DGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSL 194 (560)
Q Consensus 116 ~pI~~L~p~~~~w~Ik~RV~~k~~ir~~~n~~g-~gkvf~~~L~D~~g~~I~at~~~~~~~kf~~~l~eG~vY~Is~~~V 194 (560)
.||++|+|+ .+|+|.|||+.+.++|.|.++.| +++++++.|.| +.|.|++++|++.++. .|++|++|.| ++.|
T Consensus 3 ~kI~dl~~g-~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~D-eTG~I~~tlW~~~~~~---~i~~Gdvv~i-~g~v 76 (97)
T 3e0e_A 3 YKISELMPN-LSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKD-DTGSIRGTLWNELADF---EVKKGDIAEV-SGYV 76 (97)
T ss_dssp ECGGGCCTT-EEEEEEEEEEEECCCEEEC----CCEEEEEEEEEE-TTEEEEEEEEGGGGGC---CCCTTCEEEE-EEEE
T ss_pred eEHHHCCCC-CcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEEC-CCCcEEEEEECCcccc---ccCCCCEEEE-EEEE
Confidence 589999999 89999999999999999987555 47899999999 5669999999998875 7999999999 8888
Q ss_pred ecCCCccccCCCeeEEEEcccceEEec
Q 008606 195 KPAQKNFNHLKNEWEIFLEATSTVDLC 221 (560)
Q Consensus 195 ~~a~~~y~~~~~~yeI~f~~~T~I~~~ 221 (560)
+... ..++|.+.+++.|+.+
T Consensus 77 ~~~~-------~~~el~~g~~~~i~k~ 96 (97)
T 3e0e_A 77 KQGY-------SGLEISVDNIGIIEKS 96 (97)
T ss_dssp EEC---------CEEEEEEEEEEEECC
T ss_pred EEcC-------CeEEEEECCCcEEEEC
Confidence 6542 3789999999999875
No 11
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=99.24 E-value=4.1e-11 Score=103.45 Aligned_cols=93 Identities=24% Similarity=0.297 Sum_probs=78.4
Q ss_pred cccCccchhcccCCceeEEEEEEEEecCceeEeeccCceeeEEEEEEecCCCcEEEEEEeCcchhhhhhhHHhhhccCCc
Q 008606 234 SFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFF 313 (560)
Q Consensus 234 ~f~~i~dI~~~~~~~~VDVIGvV~~V~~~~~i~~k~G~~~~kr~i~L~D~Sg~~I~vtLWg~~a~~~~~~l~~~~~~~~~ 313 (560)
+|++|+||.. +..|||+|+|+++++++++++++|++..+|+++|.|+|| +|++|||++.|.. ....+
T Consensus 4 ~~~~I~dL~~---~~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D~TG-~IrvtlW~~~a~~---------~l~~G 70 (105)
T 3dm3_A 4 DTYNIGELSP---GMTATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETG-SIRVTLWDNLTDI---------DVGRG 70 (105)
T ss_dssp CEECGGGCCS---SEEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEETTE-EEEEEEEGGGGGS---------CCCTT
T ss_pred cceEHHHCCC---CCeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCC-cEEEEEECccccc---------ccCCC
Confidence 5788888875 478999999999999999999999999999999999999 8999999999874 12478
Q ss_pred cEEEEEEEEEecC-C-CceecccCCeEEE
Q 008606 314 PVLSVKSGKVNDF-S-GKSIGTIPSTQLF 340 (560)
Q Consensus 314 ~VV~l~~~rV~~f-~-G~sLs~~~~S~i~ 340 (560)
++|.| .++|+.+ . +..|+....|.|.
T Consensus 71 dvv~i-~g~vk~~~~g~~eL~~g~~~~i~ 98 (105)
T 3dm3_A 71 DYVRV-RGYIREGYYGGLECTANYVEILK 98 (105)
T ss_dssp CEEEE-EEEEEECTTSSEEEEEEEEEEEE
T ss_pred CEEEE-EEEEEEccCCCEEEEeCCceEEE
Confidence 99999 7887764 3 5688887777664
No 12
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=99.15 E-value=3e-10 Score=99.50 Aligned_cols=103 Identities=21% Similarity=0.322 Sum_probs=87.3
Q ss_pred CCcceeccccCCCCCceEEEEEEEEecccceeccCCC-CCcEEEEEEEeCCCCeEEEEEcchhHHHHHhhcccCcEEEEe
Q 008606 112 PARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARG-DGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLIS 190 (560)
Q Consensus 112 ~~~~~pI~~L~p~~~~w~Ik~RV~~k~~ir~~~n~~g-~gkvf~~~L~D~~g~~I~at~~~~~~~kf~~~l~eG~vY~Is 190 (560)
...+++|++|.|+.. ..|.|+|+.++++|+|.+++| +++++++.|.|+ .|+|++++|++.++.+ +.|++|++|.|+
T Consensus 4 ~~~~~~I~~L~~g~~-v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~-TG~I~~t~w~~~~~~~-~~l~~G~vv~i~ 80 (115)
T 2k50_A 4 EHRMDTISKLEEGAE-TPVTGRVMKISSPRTFTTRKGREGKLANVIIADD-TGELRAVFWTENIKLL-KKFREGDVIRIK 80 (115)
T ss_dssp TTCCCCTTTCCTTCE-EEEEEEEEEECCCEECCCTTSSCCEEEEEEEEET-TEEEEEEEETTGGGGG-GTCCTTSEEEEE
T ss_pred ccceEEHHHCCCCCE-eEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeC-CCeEEEEEeCchhhhh-hcCCCCCEEEEE
Confidence 346789999999865 599999999999998877665 368999999995 5599999999988766 789999999999
Q ss_pred eeEEecCCCccccCCCeeEEEEcccceEEeccC
Q 008606 191 KGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTE 223 (560)
Q Consensus 191 ~~~V~~a~~~y~~~~~~yeI~f~~~T~I~~~~d 223 (560)
+..|+.. |+ ..++|.+...+.|+.++|
T Consensus 81 g~~v~~~---f~---g~~qL~~~~~~~i~~~~~ 107 (115)
T 2k50_A 81 DVNIRGG---FG---GRKEAHLMPRSTVEVLDP 107 (115)
T ss_dssp EEEECCC---SS---SSCEEEECTTCCEEEESS
T ss_pred eeEEccc---cC---CeEEEEECCCceEEECCc
Confidence 9988753 43 569999999999999864
No 13
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=99.01 E-value=2e-09 Score=91.46 Aligned_cols=90 Identities=28% Similarity=0.299 Sum_probs=70.2
Q ss_pred CccchhcccCCceeEEEEEEEEecCceeEeeccCceeeEEEEEEecCCCcEEEEEEeCcchhhhhhhHHhhhccCCccEE
Q 008606 237 HISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVL 316 (560)
Q Consensus 237 ~i~dI~~~~~~~~VDVIGvV~~V~~~~~i~~k~G~~~~kr~i~L~D~Sg~~I~vtLWg~~a~~~~~~l~~~~~~~~~~VV 316 (560)
+|+||. .+..++++|.|+++++++++.+++|.+...+++.|.|+|| +|++|||+++|.. ....+++|
T Consensus 4 kI~dl~---~g~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~DeTG-~I~~tlW~~~~~~---------~i~~Gdvv 70 (97)
T 3e0e_A 4 KISELM---PNLSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDTG-SIRGTLWNELADF---------EVKKGDIA 70 (97)
T ss_dssp CGGGCC---TTEEEEEEEEEEEECCCEEEC----CCEEEEEEEEEETTE-EEEEEEEGGGGGC---------CCCTTCEE
T ss_pred EHHHCC---CCCcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCC-cEEEEEECCcccc---------ccCCCCEE
Confidence 566665 4579999999999999999988899888999999999999 9999999999863 12578999
Q ss_pred EEEEEEEecCCCc-eecccCCeEEE
Q 008606 317 SVKSGKVNDFSGK-SIGTIPSTQLF 340 (560)
Q Consensus 317 ~l~~~rV~~f~G~-sLs~~~~S~i~ 340 (560)
.| .++|+.+.|. .|+....+.|.
T Consensus 71 ~i-~g~v~~~~~~~el~~g~~~~i~ 94 (97)
T 3e0e_A 71 EV-SGYVKQGYSGLEISVDNIGIIE 94 (97)
T ss_dssp EE-EEEEEEC--CEEEEEEEEEEEE
T ss_pred EE-EEEEEEcCCeEEEEECCCcEEE
Confidence 99 7899987665 67777777663
No 14
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=98.96 E-value=3.2e-09 Score=91.72 Aligned_cols=93 Identities=14% Similarity=0.224 Sum_probs=78.9
Q ss_pred cceeccccCCCCCceEEEEEEEEecccceeccCCC-CCcEEEEEEEeCCCCeEEEEEcchhHHHHHhhcccCcEEEEeee
Q 008606 114 RIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARG-DGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKG 192 (560)
Q Consensus 114 ~~~pI~~L~p~~~~w~Ik~RV~~k~~ir~~~n~~g-~gkvf~~~L~D~~g~~I~at~~~~~~~kf~~~l~eG~vY~Is~~ 192 (560)
.+++|++|.|+...+++.++|+.+++.| .. +.| +++++++.|.| +.|.|++++|++. |++|++|.|.|+
T Consensus 2 ~~~kI~dl~pg~~~v~v~~~V~~~~~~~-~~-k~G~~~~v~~~~l~D-eTG~I~~tlW~~~-------l~~Gdvv~i~ng 71 (106)
T 2k75_A 2 DLVKIRDVSLSTPYVSVIGKITGIHKKE-YE-SDGTTKSVYQGYIED-DTARIRISSFGKQ-------LQDSDVVRIDNA 71 (106)
T ss_dssp CBCCSTTCCTTCSEEEEEEEEEEEEEEE-EE-ETTEEEEEEEEEEEC-SSCEEEEEEESSC-------CCTTEEEEEEEE
T ss_pred CcEEHHHcCCCCceEEEEEEEEEccccc-cc-cCCCeeEEEEEEEEc-CCCeEEEEEEcCc-------cCCCCEEEEEee
Confidence 4678999999998899999999999987 22 223 34599999999 6679999999986 999999999999
Q ss_pred EEecCCCccccCCCeeEEEEcccceEEeccC
Q 008606 193 SLKPAQKNFNHLKNEWEIFLEATSTVDLCTE 223 (560)
Q Consensus 193 ~V~~a~~~y~~~~~~yeI~f~~~T~I~~~~d 223 (560)
.+..- ...++|.+...+.|+++.+
T Consensus 72 ~v~~~-------~g~~~L~v~~~~~I~~~~~ 95 (106)
T 2k75_A 72 RVAQF-------NGYLSLSVGDSSRIESVNV 95 (106)
T ss_dssp EEEEE-------TTEEEEEECTTSEEEECCS
T ss_pred EEeEE-------CCEEEEEECCcEEEEECCC
Confidence 88753 4568999999999999853
No 15
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=98.87 E-value=1.6e-08 Score=87.38 Aligned_cols=91 Identities=15% Similarity=0.255 Sum_probs=76.8
Q ss_pred ccccCccchhcccCCceeEEEEEEEEecCceeEeeccCceeeEEEEEEecCCCcEEEEEEeCcchhhhhhhHHhhhccCC
Q 008606 233 FSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGF 312 (560)
Q Consensus 233 f~f~~i~dI~~~~~~~~VDVIGvV~~V~~~~~i~~k~G~~~~kr~i~L~D~Sg~~I~vtLWg~~a~~~~~~l~~~~~~~~ 312 (560)
|+|++|+||.. ....|+++|.|.++++.+ .+++|++...+++.|.|+|| +|++|||++. + ..
T Consensus 1 ~~~~kI~dl~p--g~~~v~v~~~V~~~~~~~--~~k~G~~~~v~~~~l~DeTG-~I~~tlW~~~---l----------~~ 62 (106)
T 2k75_A 1 SDLVKIRDVSL--STPYVSVIGKITGIHKKE--YESDGTTKSVYQGYIEDDTA-RIRISSFGKQ---L----------QD 62 (106)
T ss_dssp CCBCCSTTCCT--TCSEEEEEEEEEEEEEEE--EEETTEEEEEEEEEEECSSC-EEEEEEESSC---C----------CT
T ss_pred CCcEEHHHcCC--CCceEEEEEEEEEccccc--cccCCCeeEEEEEEEEcCCC-eEEEEEEcCc---c----------CC
Confidence 46788888864 345699999999999887 46788777889999999999 8999999997 1 36
Q ss_pred ccEEEEEEEEEecCCCc-eecccCCeEEEE
Q 008606 313 FPVLSVKSGKVNDFSGK-SIGTIPSTQLFI 341 (560)
Q Consensus 313 ~~VV~l~~~rV~~f~G~-sLs~~~~S~i~i 341 (560)
+.+|.|+++++..|+|+ +|+....++|..
T Consensus 63 Gdvv~i~ng~v~~~~g~~~L~v~~~~~I~~ 92 (106)
T 2k75_A 63 SDVVRIDNARVAQFNGYLSLSVGDSSRIES 92 (106)
T ss_dssp TEEEEEEEEEEEEETTEEEEEECTTSEEEE
T ss_pred CCEEEEEeeEEeEECCEEEEEECCcEEEEE
Confidence 89999999999999997 798888888763
No 16
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=98.78 E-value=6.1e-08 Score=87.96 Aligned_cols=99 Identities=13% Similarity=0.198 Sum_probs=83.6
Q ss_pred CCcceeccccCCCCCceEEEEEEEEecccc---eeccCCC-------CCcEEEEEEEeCCCCeEEEEEcchhHHHHHhhc
Q 008606 112 PARIIPIAALNPYQGRWAIKARVTAKGDLR---RYNNARG-------DGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEII 181 (560)
Q Consensus 112 ~~~~~pI~~L~p~~~~w~Ik~RV~~k~~ir---~~~n~~g-------~gkvf~~~L~D~~g~~I~at~~~~~~~kf~~~l 181 (560)
...+++|++|.|++.+.++.|||+..++++ ++....| .+++.++.|.| +.|.|+.++|++.++ .|
T Consensus 13 kp~~~kI~dL~pg~~~v~l~~kVl~~~~v~~~~~~~R~dG~~~~~~r~~~V~~~lVgD-eTG~I~ftlW~e~~~----~l 87 (145)
T 1wjj_A 13 KPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGD-ETGCILFTARNDQVD----LM 87 (145)
T ss_dssp CCSSCCSTTCCTTCCCEEEEEEEEEEEECCSSSSCCSCSSCCSSCCCCCCCEEEEEEC-SSCEEEEEECTTHHH----HT
T ss_pred CccceEHHHcCCCCCceEEEEEEEEcccccccccccccCCccccccCCceEEEEEEEc-CCcEEEEEEecCCcC----cC
Confidence 346889999999999999999999999988 5543233 56899999999 888999999998774 58
Q ss_pred ccCcEEEEeeeEEecCCCccccCCCeeEEEEcccceEEecc
Q 008606 182 EVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCT 222 (560)
Q Consensus 182 ~eG~vY~Is~~~V~~a~~~y~~~~~~yeI~f~~~T~I~~~~ 222 (560)
++|++|.|.++.++.- ....+|.+++++.|+...
T Consensus 88 ~~Gd~v~i~na~v~~~-------~G~~~L~vgk~g~Ie~~~ 121 (145)
T 1wjj_A 88 KPGATVILRNSRIDMF-------KGTMRLGVDKWGRIEATG 121 (145)
T ss_dssp CTTCEEEEEEEEEEEE-------TTEEEEEECTTCCBCCCS
T ss_pred CCCCEEEEeccEEEeE-------CCEEEEEECCCEEEEECC
Confidence 8999999999988743 246899999999999875
No 17
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=98.74 E-value=8.6e-07 Score=87.56 Aligned_cols=177 Identities=14% Similarity=0.090 Sum_probs=121.9
Q ss_pred cccCccchhcccCCceeEEEEEEEEecCceeEeeccCceeeEEEEEEecCCCcEEEEEEeCcchhhhhhhHHhhhccCCc
Q 008606 234 SFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFF 313 (560)
Q Consensus 234 ~f~~i~dI~~~~~~~~VDVIGvV~~V~~~~~i~~k~G~~~~kr~i~L~D~Sg~~I~vtLWg~~a~~~~~~l~~~~~~~~~ 313 (560)
.+.+|++|... .....|.|.|+.+++++.+...+| +....++.|.|++| +|++|+|+++|..+...| ..+
T Consensus 7 ~~~~I~~L~p~--~~~w~I~~rV~~k~~~r~~~~~~~-~g~~~~~~L~De~G-~I~at~~~~~~~~~~~~l------~~G 76 (246)
T 1jmc_A 7 KVVPIASLTPY--QSKWTICARVTNKSQIRTWSNSRG-EGKLFSLELVDESG-EIRATAFNEQVDKFFPLI------EVN 76 (246)
T ss_dssp CBCCGGGCCTT--CCCCEEEEEEEEECCCEEEECSSC-EEEEEEEEEECSSC-EEEEEEEHHHHHHHGGGC------CTT
T ss_pred ceEEHHHCCCC--CCceEEEEEEEEecccceeeCCCC-CceEEEEEEECCCC-eEEEEEChHHHHHhhhhc------ccC
Confidence 57788888653 345789999999999998876543 45667899999999 999999999998865443 367
Q ss_pred cEEEEEEEEEecCCC-------c-eecccCCeEEEECCChHHHHHHHHHHhcCCCccceeecccccccCCCccchhhhHH
Q 008606 314 PVLSVKSGKVNDFSG-------K-SIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVS 385 (560)
Q Consensus 314 ~VV~l~~~rV~~f~G-------~-sLs~~~~S~i~iNPdipEa~~L~~w~~~~g~~~~~~sls~~~~~~~~~~~~~ktI~ 385 (560)
.++.|.+++|+..++ . .|.....|.|..-++.++ + + ........++
T Consensus 77 ~vy~i~~~~v~~~~~~y~~~~~~~ei~~~~~T~I~~~~~~~~-------------------i-----P--~~~~~f~~i~ 130 (246)
T 1jmc_A 77 KVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPCEDDHH-------------------L-----P--TVQFDFTGID 130 (246)
T ss_dssp CEEEEECCEEEECCGGGCCCCCSEEEECCTTCEEEECCSCSC-------------------C-----C--CCCCCBCCGG
T ss_pred CEEEECCCEEEEcccCcccCCCCEEEEEcCCcEEEEccCccc-------------------C-----C--cceeeeEEHH
Confidence 999999999986432 2 355566666655443210 0 0 1123345677
Q ss_pred HHhhcCCCCCCCCceEEEEEEEEEEeCCCeEEeCCCCCcCccccCceeeecCCeeecCcCCCccCCceeEEEEEEEEEeC
Q 008606 386 QIKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQ 465 (560)
Q Consensus 386 ~I~~~~~g~~e~~~~~~v~atI~~I~~d~~~Y~aC~~~~~~~~C~KKv~~~~~~~~C~kC~~~~~~~~~rY~l~~~i~D~ 465 (560)
+|.+. +...++.|.|.|..+..-.- +.... .-....+..+.|.|.
T Consensus 131 ~i~~~-----~~~~~vDViG~V~~v~~~~~-~~~k~-----------------------------~g~~~~~r~~~l~D~ 175 (246)
T 1jmc_A 131 DLENK-----SKDSLVDIIGICKSYEDATK-ITVRS-----------------------------NNREVAKRNIYLMDT 175 (246)
T ss_dssp GGGGS-----CTTCEEEEEEEEEEECCCEE-EEETT-----------------------------TTEEEEEEEEEEECT
T ss_pred HHhcc-----cCCCceeEEEEEEEecCeEE-EEEec-----------------------------CCCccEEEEEEEECC
Confidence 77652 23357889999998863111 10000 112345789999999
Q ss_pred CC-eEEEEEehhhhhhh
Q 008606 466 TG-LTWVTAFQESGEEI 481 (560)
Q Consensus 466 Tg-s~~~~~Fd~~ae~l 481 (560)
|| ++.+++|++.|+.+
T Consensus 176 sg~~i~~tLWg~~a~~~ 192 (246)
T 1jmc_A 176 SGKVVTATLWGEDADKF 192 (246)
T ss_dssp TCCEEEEEEEHHHHHHC
T ss_pred CCCEEEEEEEchhhhhc
Confidence 99 58999999999865
No 18
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=98.64 E-value=3.3e-06 Score=85.84 Aligned_cols=229 Identities=10% Similarity=0.070 Sum_probs=142.0
Q ss_pred CCCcceeccccCCCCCceEEEEEEEEecccceeccCCCCCcEEEEEEEeCCCCeEEEEEcchhHHHHHhhcccCcEEEEe
Q 008606 111 APARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLIS 190 (560)
Q Consensus 111 ~~~~~~pI~~L~p~~~~w~Ik~RV~~k~~ir~~~n~~g~gkvf~~~L~D~~g~~I~at~~~~~~~kf~~~l~eG~vY~Is 190 (560)
++-.++||++|.. ...-.|.|.|+.....+.. +|..-.++|.|.|..-..|.+.+|....+.+-....+|+|+.+.
T Consensus 2 ~~y~y~~l~~l~~-~~~vnvigVV~~~~~p~~s---~G~d~~~tl~I~D~S~~gl~v~iF~~~~~~LP~v~~~GDII~l~ 77 (294)
T 1xjv_A 2 TNYIYTPLNQLKG-GTIVNVYGVVKFFKPPYLS---KGTDYCSVVTIVDQTNVKLTCLLFSGNYEALPIIYKNGDIVRFH 77 (294)
T ss_dssp CCCCCCCGGGCCS-SEEEEEEEEEEEEEEEEEC---SSSSEEEEEEEECTTCCEEEEEEEESSGGGSCCCCSTTCEEEEE
T ss_pred CcceEEEHHHhhC-CCeeEEEEEEEEcCCCccC---CCCeEEEEEEEEcCCCCCEEEEEECCChHHCCCCCCCCCEEEEE
Confidence 3557899999975 5567999999988776543 45567899999998878899999998777777777999999999
Q ss_pred eeEEecCCCccccCCCeeEEEEcccceEEeccCCC-CC-CCcc---ccccc----------------------Cccchhc
Q 008606 191 KGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEED-DS-IPKQ---QFSFR----------------------HISEIES 243 (560)
Q Consensus 191 ~~~V~~a~~~y~~~~~~yeI~f~~~T~I~~~~d~~-~~-iP~~---~f~f~----------------------~i~dI~~ 243 (560)
+++|+..+.. ..+..+....+-...... .. .|.. .|.|. ++..|.+
T Consensus 78 ~vki~~~~g~-------~~~v~~~~~s~~~f~g~~~~~~~p~~~~~~~~~~~~e~~~~~~Lr~w~~~~~~~~~~~~~L~d 150 (294)
T 1xjv_A 78 RLKIQVYKKE-------TQGITSSGFASLTFEGTLGAPIIPRTSSKYFNFTTEDHKMVEALRVWASTHMSPSWTLLKLCD 150 (294)
T ss_dssp EEEEEEETTE-------EEEEEEEEEEEEEECCSTTCCCCCBCSCSSCCCCHHHHHHHHHHHHHHHHHCC---CCCCGGG
T ss_pred EEEEEEECCe-------EEEEccCCeEEEEECCCCCCCcCCcccCCCcCCCHHHHHHHHHHHHHHHhccCCCCceeEHHH
Confidence 9999865433 222222222222221111 01 1111 11111 2223344
Q ss_pred ccCCceeEEEEEEEEecCce--e--EeeccCceeeEEEEEEecC--------------CCcEEEEEEeCcchhhhhhhHH
Q 008606 244 AENNSIVDVIGIVISVNPSV--P--ILRKNGMETQRRILNLKDT--------------SGRSVELTLWGDFCNKEGQKLQ 305 (560)
Q Consensus 244 ~~~~~~VDVIGvV~~V~~~~--~--i~~k~G~~~~kr~i~L~D~--------------Sg~~I~vtLWg~~a~~~~~~l~ 305 (560)
+..+.++|+++.|+++.... . +...||+......+...++ ...++.|++|++++.. .
T Consensus 151 i~~~~f~DLv~qVv~v~~~~~~~~~LyVwDgT~~~~~~~~~~~~~~~~~gd~~~~~~~~~lt~~V~~~d~h~~~-----~ 225 (294)
T 1xjv_A 151 VQPMQYFDLTCQLLGKAEVDGASFLLKVWDGTRTPFPSWRVLIQDLVLEGDLSHIHRLQNLTIDILVYDNHVHV-----A 225 (294)
T ss_dssp CCSSCEEEEEEEEEEEEECSSSEEEEEEECSSCCSSCBCCCCCCSSCCEECHHHHHHHGGGSEEEEEETTHHHH-----H
T ss_pred cccCCeeeEEEEEEEEEecCCCeEEEEEECCCCCCCCccccccccccccCcccccccccCeeEEEEEEcchhHH-----H
Confidence 44678999999999885431 1 1122454432222222111 1137999999999842 2
Q ss_pred hhhccCCccEEEEEEEEEecC--------CCc---ee--cccCCeEEEECC-ChHHHHHHHHHHhc
Q 008606 306 EMVDVGFFPVLSVKSGKVNDF--------SGK---SI--GTIPSTQLFINP-DFAEAHELREWFDS 357 (560)
Q Consensus 306 ~~~~~~~~~VV~l~~~rV~~f--------~G~---sL--s~~~~S~i~iNP-dipEa~~L~~w~~~ 357 (560)
.. .+.+..|.|.+++++.- +|. .| .....++|.+-| +.+++.+++++++.
T Consensus 226 ~~--lk~Gd~V~l~Nv~~k~~~~~~~~~~~~~le~~lh~~~~~~~~i~~l~~~~~~~~~~~~~~~~ 289 (294)
T 1xjv_A 226 RS--LKVGSFLRIYSLHTKLQSMNSENQTMLSLEFHLHGGTSYGRGIRVLPESNSDVDQLKKDLES 289 (294)
T ss_dssp HH--CCTTCEEEEEEEEEEEEEECTTSCEEEEEEEEECSSCGGGCEEEEECTTSHHHHHHHHHHHH
T ss_pred hc--CCCCcEEEEeeeEEEecccccccCCCcceEEEEecCcccCcEeEEecCCCCCHHHHHHHHhh
Confidence 22 35789999999887743 221 12 223456777666 66788878777653
No 19
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A
Probab=98.55 E-value=3.9e-05 Score=83.04 Aligned_cols=342 Identities=13% Similarity=0.115 Sum_probs=195.7
Q ss_pred CCCCcceeccccCC-CCCceEEEEEEEEecccceeccCCCCCcEEEEEEEeCCCC-------eE-----EEEEcchhHHH
Q 008606 110 EAPARIIPIAALNP-YQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGG-------EI-----RVTCFNAVVDR 176 (560)
Q Consensus 110 ~~~~~~~pI~~L~p-~~~~w~Ik~RV~~k~~ir~~~n~~g~gkvf~~~L~D~~g~-------~I-----~at~~~~~~~k 176 (560)
.++-.+++|+++.- ....-.|.|-|+.....+. .+|..-+++|.|.|..-. .| .+.+|....+.
T Consensus 33 ~~~y~y~~L~~a~~~~~~~VnviGVVvd~~~P~~---T~G~D~~~t~tI~D~S~~~~~~~~~Gl~~~~~~v~iF~~~~e~ 109 (495)
T 1jb7_A 33 GHKYEYVELAKASLTSAQPQHFYAVVIDATFPYK---TNQERYICSLKIVDPTLYLKQQKGAGDASDYATLVLYAKRFED 109 (495)
T ss_dssp ---CCBCCTTTSCSSCCSCEEEEEEEEEECCCEE---CSSSCEEEEEEEEBTTBSBCCTTSSCSCBCCEEEEEEESSGGG
T ss_pred cCCCccEEHHHHHhccCCeEEEEEEEeecCCcee---cCCCeEEEEEEEEeCCCCcccccccccccCceEEEEECCChHH
Confidence 34568999997753 3456799999998877764 235557889999995433 47 99999887666
Q ss_pred HHhhcccCcEEEEeeeEEecCCCcccc----CC-CeeEEEEcccceEE--ec--cC-CCCCCCcc----cccc-------
Q 008606 177 FYEIIEVGRVYLISKGSLKPAQKNFNH----LK-NEWEIFLEATSTVD--LC--TE-EDDSIPKQ----QFSF------- 235 (560)
Q Consensus 177 f~~~l~eG~vY~Is~~~V~~a~~~y~~----~~-~~yeI~f~~~T~I~--~~--~d-~~~~iP~~----~f~f------- 235 (560)
+-....+|+|+.+.+++|+.-++...- .. ..| ..|....... ++ +. ..+..|.. .|.|
T Consensus 110 LP~V~~~GDII~LhrvkIq~~ng~~~~v~~~~~~Ssw-avF~~~~~~~~~~i~~~~~~~~~~P~~~S~~~~~~~~~d~~~ 188 (495)
T 1jb7_A 110 LPIIHRAGDIIRVHRATLRLYNGQRQFNANVFYSSSW-ALFSTDKRSVTQEINNQDAVSDTTPFSFSSKHATIEKNEISI 188 (495)
T ss_dssp SCCCCEETCEEEEEEEEEEEETTEEEEEEETTTTCEE-EEECSSSSCHHHHHHTCCCSCTTSCSEESSSCCCCCTTHHHH
T ss_pred CCCCCCCCCEEEEEEEEEEEECCcEEEEecCCCceEE-EEEeCCccccccccCCcccCcccCCccccCCCccCCHHHHHH
Confidence 655558999999999999876654321 11 222 3343322000 00 00 01111211 1111
Q ss_pred --------------------cCccchh-cccCCceeEEEEEEEEecCceeEeeccCceeeEEEEEEecCCCcEEEEEEeC
Q 008606 236 --------------------RHISEIE-SAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWG 294 (560)
Q Consensus 236 --------------------~~i~dI~-~~~~~~~VDVIGvV~~V~~~~~i~~k~G~~~~kr~i~L~D~Sg~~I~vtLWg 294 (560)
.++..|. ++..+.++|++|.|+++.... + .+-.|.|-|.|+.. .++++.
T Consensus 189 v~~LR~W~~~~~~~~~~~~~~~f~~L~~di~~~~f~DLv~qVv~~~~~d-----~----~~~~L~VwDgT~~~-~~~~~~ 258 (495)
T 1jb7_A 189 LQNLRKWANQYFSSYSVISSDMYTALNKAQAQKGDFDVVAKILQVHELD-----E----YTNELKLKDASGQV-FYTLSL 258 (495)
T ss_dssp HHHHHHHHHHHHHHSCSSCGGGSCCGGGGGGCSSCEEEEEEEEEEEECS-----S----SEEEEEEEETTCCE-EEEEEE
T ss_pred HHHHHHHHHhcccccccccccchhhhhhhhccCCceeEEEEEeEEeccC-----C----CeEEEEEEeCCCCC-cceeec
Confidence 1222333 444678999999999986541 1 34578888888743 233333
Q ss_pred cchhhhhhhHHhhhccCCccEEEEEEEEEecCCCc--eecccCCeEE-EECCChHHHHHHHHHHhcCCCccceeecccc-
Q 008606 295 DFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGK--SIGTIPSTQL-FINPDFAEAHELREWFDSGGKNAATVSISRE- 370 (560)
Q Consensus 295 ~~a~~~~~~l~~~~~~~~~~VV~l~~~rV~~f~G~--sLs~~~~S~i-~iNPdipEa~~L~~w~~~~g~~~~~~sls~~- 370 (560)
.. .+ . ....+.|+-|...+..+-.+. .+....-..| .+.|.-....++++++..... .....+...
T Consensus 259 ~~--~f----P---~~~~G~Vlri~~~~~de~~~~l~~~~~~~w~ni~~~~~~sk~~ke~~~~~l~~~~-~~~~~~~~~~ 328 (495)
T 1jb7_A 259 KL--KF----P---HVRTGEVVRIRSATYDETSTQKKVLILSHYSNIITFIQSSKLAKELRAKIQDDHS-VEVASLKKNV 328 (495)
T ss_dssp TT--TC----T---TCCTTCEEEEEEEEECTTCCSSCEEEEEEEEEEEEECTTCHHHHHHHHHSCCCCH-HHHHHTTSSS
T ss_pred cc--cC----C---ceeeEEEEEEecCccchhhhhhhhhccccccceeEEcccchhhhhhhhcccchhh-hhhhhccccc
Confidence 21 00 1 112378888888877753331 1111111222 345555555666666544320 000000000
Q ss_pred ------cc--cCCCccchhhhHHHHhhcCCCCCCCC--ceEEEEEEEEEEeCC---CeEEeCCCCCcCccccCceeeecC
Q 008606 371 ------IA--AGGAKNEIHKTVSQIKNEGLGRSEKP--DWVTVRAFITFIKSD---SFCYTACPLMIGDRQCNKKVTQSG 437 (560)
Q Consensus 371 ------~~--~~~~~~~~~ktI~~I~~~~~g~~e~~--~~~~v~atI~~I~~d---~~~Y~aC~~~~~~~~C~KKv~~~~ 437 (560)
.+ ...-......||.||........+-+ ..|.+.+.|+.+-+- .|+=+-|+ .|.+.-..
T Consensus 329 ~~~~~~lT~~~~~~~~~p~ttL~dIL~~~~~~~~v~~K~~fr~~VRVV~~~P~~i~df~~~~~~------~~~~~~s~-- 400 (495)
T 1jb7_A 329 SLNAVVLTEVDKKHAALPSTSLQDLFHHADSDKELQAQDTFRTQFYVTKIEPSDVKEWVKGYDR------KTKKSSSL-- 400 (495)
T ss_dssp CSSCEECEEECGGGTTSCBCCHHHHHHTTTTCHHHHTCSEEEEEEEEEEEESSSGGGGEEEEET------TTTEEECS--
T ss_pred CCCCCcCCeecccCCCCCcEEHHHHhcCcccCccccccccEEEEEEEEEecCCCHHHhhhhhcc------cccccccc--
Confidence 00 00001223468999976421000111 238899998877553 38877788 88876221
Q ss_pred CeeecCcCCCccCCceeEEEEEEEEEeCC-------CeEEEEEehhhhhhhcCCCHHHHHH
Q 008606 438 NRWQCDRCNQEIDECDYRYLLQAQIQDQT-------GLTWVTAFQESGEEILGCPAKELYM 491 (560)
Q Consensus 438 ~~~~C~kC~~~~~~~~~rY~l~~~i~D~T-------gs~~~~~Fd~~ae~llG~sA~el~~ 491 (560)
+..|.+. .+-|++.+.|.|.| +.+.+.++|+.|.++|+++|.+|..
T Consensus 401 ----~g~~~~~----~~~~~f~LlveD~t~~~~~~~~ri~l~v~g~~~a~Fl~l~a~nL~~ 453 (495)
T 1jb7_A 401 ----KGASGKG----DNIFQVQFLVKDASTQLNNNTYRVLLYTQDGLGANFFNVKADNLHK 453 (495)
T ss_dssp ----TTCGGGC----EEEEEEEEEEECGGGTTBSEEEEEEEECTTSTTTTTTSSCCCCTTT
T ss_pred ----ccccCCC----CceEEEEEEEecCCCCCCCcccEEEEEEeCcchheecCCChHhhhc
Confidence 1133332 56899999999999 9999999999888999999999865
No 20
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=98.55 E-value=1.9e-07 Score=84.69 Aligned_cols=99 Identities=13% Similarity=0.142 Sum_probs=78.8
Q ss_pred ccccccCccchhcccCCceeEEEEEEEEecCce---eEeeccCc------eeeEEEEEEecCCCcEEEEEEeCcchhhhh
Q 008606 231 QQFSFRHISEIESAENNSIVDVIGIVISVNPSV---PILRKNGM------ETQRRILNLKDTSGRSVELTLWGDFCNKEG 301 (560)
Q Consensus 231 ~~f~f~~i~dI~~~~~~~~VDVIGvV~~V~~~~---~i~~k~G~------~~~kr~i~L~D~Sg~~I~vtLWg~~a~~~~ 301 (560)
..-.|++|+||.. ...-++|.|.|.+++++. +..+++|. ....+++.|.|+|| +|.+|||++++..
T Consensus 12 ~kp~~~kI~dL~p--g~~~v~l~~kVl~~~~v~~~~~~~R~dG~~~~~~r~~~V~~~lVgDeTG-~I~ftlW~e~~~~-- 86 (145)
T 1wjj_A 12 RKPVFVKVEQLKP--GTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDETG-CILFTARNDQVDL-- 86 (145)
T ss_dssp CCCSSCCSTTCCT--TCCCEEEEEEEEEEEECCSSSSCCSCSSCCSSCCCCCCCEEEEEECSSC-EEEEEECTTHHHH--
T ss_pred cCccceEHHHcCC--CCCceEEEEEEEEcccccccccccccCCccccccCCceEEEEEEEcCCc-EEEEEEecCCcCc--
Confidence 3446889999875 345699999999999876 33334664 56778999999999 8999999998754
Q ss_pred hhHHhhhccCCccEEEEEEEEEecCCCc-eecccCCeEEEEC
Q 008606 302 QKLQEMVDVGFFPVLSVKSGKVNDFSGK-SIGTIPSTQLFIN 342 (560)
Q Consensus 302 ~~l~~~~~~~~~~VV~l~~~rV~~f~G~-sLs~~~~S~i~iN 342 (560)
+ ..+.+|-|+++.++.|+|+ .|+....++|...
T Consensus 87 ------l--~~Gd~v~i~na~v~~~~G~~~L~vgk~g~Ie~~ 120 (145)
T 1wjj_A 87 ------M--KPGATVILRNSRIDMFKGTMRLGVDKWGRIEAT 120 (145)
T ss_dssp ------T--CTTCEEEEEEEEEEEETTEEEEEECTTCCBCCC
T ss_pred ------C--CCCCEEEEeccEEEeECCEEEEEECCCEEEEEC
Confidence 2 3689999999999999997 7888877777543
No 21
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=98.52 E-value=1.2e-06 Score=75.93 Aligned_cols=92 Identities=15% Similarity=0.190 Sum_probs=75.6
Q ss_pred cceeccccCCCCCceEEEEEEEEecccceeccCCCCCcEEEEEEEeCCCCeEEEEEcchhHHHHHhhcccCcEEEEeeeE
Q 008606 114 RIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGS 193 (560)
Q Consensus 114 ~~~pI~~L~p~~~~w~Ik~RV~~k~~ir~~~n~~g~gkvf~~~L~D~~g~~I~at~~~~~~~kf~~~l~eG~vY~Is~~~ 193 (560)
.+++|++|.|+..+..+.|||+.+|+.|. ......+.|.| +.|.|++++|++. -.+.|++|++|.|.++.
T Consensus 4 ~~~kI~dl~~~~~~v~v~~~V~~~~~~~~------~~~~~~~~l~D-eTG~I~~t~W~~~---~~~~~~~G~~V~i~n~~ 73 (109)
T 2kbn_A 4 QLTKIVDIVENGQWANLKAKVIQLWENTH------ESISQVGLLGD-ETGIIKFTIWKNA---ELPLLEQGESYLLRSVV 73 (109)
T ss_dssp CBCCTTTCCSTTCEEEEEEEEEEEEECCC------SSEEEEEEEEC-TTCCEEEEEEGGG---CCCCCCTTCEEEEEEEE
T ss_pred CceEHHHCCCCCCcEEEEEEEEEeEcCCC------CeEEEEEEEEC-CCCeEEEEEECcc---cccccCCCCEEEEEEEE
Confidence 57789999999888999999999987432 23566788999 6779999999943 12589999999999999
Q ss_pred EecCCCccccCCCeeEEEEcccceEEecc
Q 008606 194 LKPAQKNFNHLKNEWEIFLEATSTVDLCT 222 (560)
Q Consensus 194 V~~a~~~y~~~~~~yeI~f~~~T~I~~~~ 222 (560)
+..-+ ...+|.+++.+.|+...
T Consensus 74 v~~~~-------G~~~L~v~~~~~I~~~~ 95 (109)
T 2kbn_A 74 VGEYN-------DRFQVQVNKNSSIEKLS 95 (109)
T ss_dssp EEEET-------TEEEEEECSSSEEEECS
T ss_pred EEEEC-------CEEEEEECCceEEEECC
Confidence 87643 45899999999999875
No 22
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=98.38 E-value=1.9e-06 Score=74.54 Aligned_cols=88 Identities=14% Similarity=0.190 Sum_probs=68.4
Q ss_pred ccCccchhcccCCceeEEEEEEEEecCceeEeeccCceeeEEEEEEecCCCcEEEEEEeCcc-hhhhhhhHHhhhccCCc
Q 008606 235 FRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDF-CNKEGQKLQEMVDVGFF 313 (560)
Q Consensus 235 f~~i~dI~~~~~~~~VDVIGvV~~V~~~~~i~~k~G~~~~kr~i~L~D~Sg~~I~vtLWg~~-a~~~~~~l~~~~~~~~~ 313 (560)
+++|+||.. .+.-|++.|.|+++... +.+. ..+.+.|.|+|| +|++|||++. +.. + ..+
T Consensus 5 ~~kI~dl~~--~~~~v~v~~~V~~~~~~-----~~~~--~~~~~~l~DeTG-~I~~t~W~~~~~~~--------~--~~G 64 (109)
T 2kbn_A 5 LTKIVDIVE--NGQWANLKAKVIQLWEN-----THES--ISQVGLLGDETG-IIKFTIWKNAELPL--------L--EQG 64 (109)
T ss_dssp BCCTTTCCS--TTCEEEEEEEEEEEEEC-----CCSS--EEEEEEEECTTC-CEEEEEEGGGCCCC--------C--CTT
T ss_pred ceEHHHCCC--CCCcEEEEEEEEEeEcC-----CCCe--EEEEEEEECCCC-eEEEEEECcccccc--------c--CCC
Confidence 556666653 36789999999999863 2333 457899999999 8999999943 322 2 468
Q ss_pred cEEEEEEEEEecCCCc-eecccCCeEEEEC
Q 008606 314 PVLSVKSGKVNDFSGK-SIGTIPSTQLFIN 342 (560)
Q Consensus 314 ~VV~l~~~rV~~f~G~-sLs~~~~S~i~iN 342 (560)
.+|.|+++++.+|+|+ +|+....+.|..-
T Consensus 65 ~~V~i~n~~v~~~~G~~~L~v~~~~~I~~~ 94 (109)
T 2kbn_A 65 ESYLLRSVVVGEYNDRFQVQVNKNSSIEKL 94 (109)
T ss_dssp CEEEEEEEEEEEETTEEEEEECSSSEEEEC
T ss_pred CEEEEEEEEEEEECCEEEEEECCceEEEEC
Confidence 9999999999999996 8988888888653
No 23
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=98.36 E-value=1.1e-05 Score=86.61 Aligned_cols=177 Identities=15% Similarity=0.062 Sum_probs=120.0
Q ss_pred ccCccchhcccCCceeEEEEEEEEecCceeEeeccCceeeEEEEEEecCCCcEEEEEEeCcchhhhhhhHHhhhccCCcc
Q 008606 235 FRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFP 314 (560)
Q Consensus 235 f~~i~dI~~~~~~~~VDVIGvV~~V~~~~~i~~k~G~~~~kr~i~L~D~Sg~~I~vtLWg~~a~~~~~~l~~~~~~~~~~ 314 (560)
+++|++|... ....-|.|.|+..++++.+...+| +....++.|.|++| .|++|+|++.+..|...| ..+.
T Consensus 3 ~~~I~~L~p~--~~~w~I~~rV~~k~~ir~~~~~~~-~g~~~~~~L~De~G-~I~at~~~~~~~~f~~~l------~eG~ 72 (444)
T 4gop_C 3 IYPIEGLSPY--QNRWTIKARVTSKSDIRHWSNQRG-EGKLFSVNLLDDSG-EIKATGFNDAVDRFYPLL------QENH 72 (444)
T ss_dssp CCCSTTCCTT--CCSCEEEEECCEECCCEEEECSSC-EEEEEEEEEECSSC-EEEEEEETHHHHHHTTTC------CTTC
T ss_pred ceeHHHCCCC--CcceEEEEEEEEccCcceecCCCC-CceEEEEEEEcCCC-EEEEEEeHHHHHHHHHhe------ecCC
Confidence 6778888653 246799999999999998876544 44567899999999 999999999998875443 3679
Q ss_pred EEEEEEEEEecCCCc--------eecccCCeEEEECCChHHHHHHHHHHhcCCCccceeecccccccCCCccchhhhHHH
Q 008606 315 VLSVKSGKVNDFSGK--------SIGTIPSTQLFINPDFAEAHELREWFDSGGKNAATVSISREIAAGGAKNEIHKTVSQ 386 (560)
Q Consensus 315 VV~l~~~rV~~f~G~--------sLs~~~~S~i~iNPdipEa~~L~~w~~~~g~~~~~~sls~~~~~~~~~~~~~ktI~~ 386 (560)
|+.|.+++|+..+++ .|.....|.|..-++.+ . + + .......+|++
T Consensus 73 vy~Is~~~V~~~~~~y~~~~~~~ei~~~~~T~V~~~~d~~--------------~-----i-----P--~~~~~f~~i~~ 126 (444)
T 4gop_C 73 VYLISKARVNIAKKQFSNLQNEYEITFENSTEIEECTDAT--------------D-----V-----P--EVKYEFVRINE 126 (444)
T ss_dssp EEEEESCEEEECCGGGCSCCCSEEEEECTTCEEEECSCCS--------------S-----S-----C--CCCCCBCCGGG
T ss_pred EEEEcCCEEEecCCccccCCCCEEEEEcCCcEEEEccCcc--------------c-----C-----c--ceeecccCHHH
Confidence 999999999865432 35555566665544310 0 0 0 01233456777
Q ss_pred HhhcCCCCCCCCceEEEEEEEEEEeCCCeEEeCCCCCcCccccCceeeecCCeeecCcCCCccCCceeEEEEEEEEEeCC
Q 008606 387 IKNEGLGRSEKPDWVTVRAFITFIKSDSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQT 466 (560)
Q Consensus 387 I~~~~~g~~e~~~~~~v~atI~~I~~d~~~Y~aC~~~~~~~~C~KKv~~~~~~~~C~kC~~~~~~~~~rY~l~~~i~D~T 466 (560)
|... +....+.|.|.|..+..-. .+.. . . .-....+..+.|.|.|
T Consensus 127 i~~~-----~~~~~vDViG~V~~v~~~~-~i~~-k--------------~--------------~g~~~~kr~i~L~D~s 171 (444)
T 4gop_C 127 LESV-----EANQQCDVIGILDSYGELS-EIVS-K--------------A--------------SQRPVQKRELTLVDQG 171 (444)
T ss_dssp GGGS-----CSSCCCBEEEEEEEECCCE-EECC-T--------------T--------------TCSCEEEEEEEEECTT
T ss_pred Hhcc-----CCCCceEEEEEEEEcCCcE-EEEE-c--------------c--------------CCceeeEEEEEEEeCC
Confidence 7652 2334567889998885211 0000 0 0 1122456799999999
Q ss_pred C-eEEEEEehhhhhhhc
Q 008606 467 G-LTWVTAFQESGEEIL 482 (560)
Q Consensus 467 g-s~~~~~Fd~~ae~ll 482 (560)
| ++.+++|++.|+.+-
T Consensus 172 g~~i~~tLWg~~A~~f~ 188 (444)
T 4gop_C 172 NRSVKLTLWGKTAETFP 188 (444)
T ss_dssp CBEEEEEEEHHHHHTST
T ss_pred CCEEEEEEEhhhhhhhh
Confidence 9 889999999998654
No 24
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.18 E-value=1.2e-05 Score=70.11 Aligned_cols=101 Identities=18% Similarity=0.113 Sum_probs=77.0
Q ss_pred cccCccchhcccCCceeEEEEEEEEecCceeEeeccCceeeEEEEEEecCCCcEEEEEEeCcchhhhhhhHHhhhccCCc
Q 008606 234 SFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFF 313 (560)
Q Consensus 234 ~f~~i~dI~~~~~~~~VDVIGvV~~V~~~~~i~~k~G~~~~kr~i~L~D~Sg~~I~vtLWg~~a~~~~~~l~~~~~~~~~ 313 (560)
.+++|++|... ..-.-+.|.|+.+++++.+..++| +....++.|.|++| +|++|+|++.|..+...| ..+
T Consensus 3 ~~~~Is~L~p~--~~~w~I~~rV~~k~~~r~~~~~~~-~g~~~~~~L~De~G-~I~at~~~~~~~~f~~~l------~eG 72 (114)
T 1ynx_A 3 PIFAIEQLSPY--QNVWTIKARVSYKGEIKTWHNQRG-DGKLFNVNFLDTSG-EIRATAFNDFATKFNEIL------QEG 72 (114)
T ss_dssp CBCCGGGCCTT--TCCCEEEEEEEEEEEEEEEECSSC-EEEEEEEEEEETTE-EEEEEECHHHHHHHHHHS------CSS
T ss_pred ceEEHHHCCCC--CCceEEEEEEEEeccceEEecCCC-CceEEEEEEECCCC-eEEEEECHHHHHHHHhhc------ccC
Confidence 46788888653 235889999999999999887655 55778899999999 999999999999875544 367
Q ss_pred cEEEEEEEEEecCCC--------ceecccCCeEEEECCC
Q 008606 314 PVLSVKSGKVNDFSG--------KSIGTIPSTQLFINPD 344 (560)
Q Consensus 314 ~VV~l~~~rV~~f~G--------~sLs~~~~S~i~iNPd 344 (560)
.|+.|.+++|+.-++ ..|.....|.|..-+|
T Consensus 73 ~vy~Is~~~V~~a~~~y~~~~~~yei~f~~~T~I~~~~d 111 (114)
T 1ynx_A 73 KVYYVSKAKLQPAKPQFTNLTHPYELNLDRDTVIEECFD 111 (114)
T ss_dssp SEEEEESCEEEECCTTTSSSSSCEEEEECSSCEEEESCC
T ss_pred cEEEECCcEEEECCCCcccCCCCEEEEECCCCEEEECCC
Confidence 999999999885322 1455566676665443
No 25
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=98.11 E-value=4e-05 Score=77.74 Aligned_cols=143 Identities=10% Similarity=0.142 Sum_probs=96.3
Q ss_pred cccccCccchhcccCCceeEEEEEEEEecCceeEeeccCceeeEEEEEEecCCCcEEEEEEeCcchhhhhhhHHhhhccC
Q 008606 232 QFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVG 311 (560)
Q Consensus 232 ~f~f~~i~dI~~~~~~~~VDVIGvV~~V~~~~~i~~k~G~~~~kr~i~L~D~Sg~~I~vtLWg~~a~~~~~~l~~~~~~~ 311 (560)
.|.|++|+++. .+..|+|||+|+++++... + .|+ -....|+|.|.|...|.|.+|.+..+.+ .. + ..
T Consensus 3 ~y~y~~l~~l~---~~~~vnvigVV~~~~~p~~--s-~G~-d~~~tl~I~D~S~~gl~v~iF~~~~~~L----P~-v-~~ 69 (294)
T 1xjv_A 3 NYIYTPLNQLK---GGTIVNVYGVVKFFKPPYL--S-KGT-DYCSVVTIVDQTNVKLTCLLFSGNYEAL----PI-I-YK 69 (294)
T ss_dssp CCCCCCGGGCC---SSEEEEEEEEEEEEEEEEE--C-SSS-SEEEEEEEECTTCCEEEEEEEESSGGGS----CC-C-CS
T ss_pred cceEEEHHHhh---CCCeeEEEEEEEEcCCCcc--C-CCC-eEEEEEEEEcCCCCCEEEEEECCChHHC----CC-C-CC
Confidence 47899999873 5889999999999987743 3 354 4678999999998889999998865442 21 1 14
Q ss_pred CccEEEEEEEEEecCCCc-ee-cccCCeEEEECCC--------------------hHHHHHHHHHHhcCCCccceeeccc
Q 008606 312 FFPVLSVKSGKVNDFSGK-SI-GTIPSTQLFINPD--------------------FAEAHELREWFDSGGKNAATVSISR 369 (560)
Q Consensus 312 ~~~VV~l~~~rV~~f~G~-sL-s~~~~S~i~iNPd--------------------ipEa~~L~~w~~~~g~~~~~~sls~ 369 (560)
.|+||.|++++|..|+|+ .+ +..+.+.+.+++. ..-+..||+|+.+.-. .
T Consensus 70 ~GDII~l~~vki~~~~g~~~~v~~~~~s~~~f~g~~~~~~~p~~~~~~~~~~~~e~~~~~~Lr~w~~~~~~--------~ 141 (294)
T 1xjv_A 70 NGDIVRFHRLKIQVYKKETQGITSSGFASLTFEGTLGAPIIPRTSSKYFNFTTEDHKMVEALRVWASTHMS--------P 141 (294)
T ss_dssp TTCEEEEEEEEEEEETTEEEEEEEEEEEEEEECCSTTCCCCCBCSCSSCCCCHHHHHHHHHHHHHHHHHCC---------
T ss_pred CCCEEEEEEEEEEEECCeEEEEccCCeEEEEECCCCCCCcCCcccCCCcCCCHHHHHHHHHHHHHHHhccC--------C
Confidence 689999999999999997 33 2222232334421 1234679999875210 0
Q ss_pred ccccCCCccchhhhHHHHhhcCCCCCCCCceEEEEEEEEEEe
Q 008606 370 EIAAGGAKNEIHKTVSQIKNEGLGRSEKPDWVTVRAFITFIK 411 (560)
Q Consensus 370 ~~~~~~~~~~~~ktI~~I~~~~~g~~e~~~~~~v~atI~~I~ 411 (560)
......|++|++ ..||-+.|.|.++-
T Consensus 142 --------~~~~~~L~di~~--------~~f~DLv~qVv~v~ 167 (294)
T 1xjv_A 142 --------SWTLLKLCDVQP--------MQYFDLTCQLLGKA 167 (294)
T ss_dssp ----------CCCCGGGCCS--------SCEEEEEEEEEEEE
T ss_pred --------CCceeEHHHccc--------CCeeeEEEEEEEEE
Confidence 011234555543 26899999998763
No 26
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A
Probab=97.75 E-value=0.0001 Score=69.22 Aligned_cols=89 Identities=18% Similarity=0.283 Sum_probs=70.0
Q ss_pred ccccCccchhc-ccCCceeEEEEEEEEecCceeEeeccCceeeEEEEEEecCC----CcEEEEEEeCcchhhhhhhHHhh
Q 008606 233 FSFRHISEIES-AENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTS----GRSVELTLWGDFCNKEGQKLQEM 307 (560)
Q Consensus 233 f~f~~i~dI~~-~~~~~~VDVIGvV~~V~~~~~i~~k~G~~~~kr~i~L~D~S----g~~I~vtLWg~~a~~~~~~l~~~ 307 (560)
+.|+++.++.+ +..+..|+|||+|+++++... +..|+...+..|+|.|.| +..|.|.++.+..+.+ ..
T Consensus 27 ~~~~~~r~~l~~~~~g~~VNviGVVvd~~~P~~--S~rGtkD~~~TltI~D~S~~~~~~gL~v~iF~~~~e~L----P~- 99 (187)
T 1qzg_A 27 LTFQSIRSSQELQKKNTIVNLFGIVKDFTPSRQ--SLHGTKDWVTTVYLWDPTCDTSSIGLQIHLFSKQGNDL----PV- 99 (187)
T ss_dssp EEEECHHHHTSCCSSCEEEEEEEEEEEEEEEEE--CSSTTCCEEEEEEEECTTSCTTSCCEEEEEEESSSSCS----CC-
T ss_pred eeEEEHHHHHhhccCCCEEEEEEEEEEccCcee--cCCCCccEEEEEEEEeCCCCCCCCceEEEEECCChhhC----CC-
Confidence 56888888765 457899999999999999854 313664678899999998 5679999998875542 21
Q ss_pred hccCCccEEEEEEEEEecCCCc
Q 008606 308 VDVGFFPVLSVKSGKVNDFSGK 329 (560)
Q Consensus 308 ~~~~~~~VV~l~~~rV~~f~G~ 329 (560)
+ ...++||.|+.++|+.|+|.
T Consensus 100 V-~~~GDIIlL~rvkiq~~~g~ 120 (187)
T 1qzg_A 100 I-KQVGQPLLLHQITLRSYRDR 120 (187)
T ss_dssp C-CSTTCEEEEEEEEEEEETTE
T ss_pred C-CCCCCEEEEEEEEEEEECCe
Confidence 1 14689999999999999997
No 27
>3u58_A Tetrahymena TEB1 AB; tetrahymena, telomerase, TEB1, processivity factor, DNA BIND protein-DNA complex; HET: DNA; 2.61A {Tetrahymena thermophila}
Probab=97.60 E-value=0.0038 Score=54.92 Aligned_cols=160 Identities=23% Similarity=0.345 Sum_probs=112.9
Q ss_pred cceeccccCCCCC--ceEEEEEEEEecccceeccCCCCCcEEEEEEEeCCCCeEEEEEcchhHHHHHhhcccCcEEEEee
Q 008606 114 RIIPIAALNPYQG--RWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISK 191 (560)
Q Consensus 114 ~~~pI~~L~p~~~--~w~Ik~RV~~k~~ir~~~n~~g~gkvf~~~L~D~~g~~I~at~~~~~~~kf~~~l~eG~vY~Is~ 191 (560)
...-|+.|.-+.. .+...+||+.|+. .|.|.. +.+.|-+.-.|+...+|..++|.. ++.-|..|++|+-|++.+
T Consensus 10 qtllisqlqvgknrfsfkfegrvvykss--tfqnqq-dskyffitaqdannqeinlsfwqk-vdqsyqtlkvgqyyyfig 85 (213)
T 3u58_A 10 QTLLISQLQVGKNRFSFKFEGRVVYKSS--TFQNQQ-DSKYFFITAQDANNQEINLSFWQK-VDQSYQTLKVGQYYYFIG 85 (213)
T ss_dssp EEECGGGCCTTSCTTSEEEEEEEEEECC--CBCCST-TCCBEEEEEECTTSCEEEEEECSS-HHHHHHHCCTTCEEEEES
T ss_pred hhhhhhhhhhccceeeEEeeeEEEEeec--cccccc-cccEEEEEeecCCCceechHHHHH-hhhhhheeeeceEEEEEc
Confidence 3456888888765 5778899999986 576654 458899999999999999999986 677778899999999999
Q ss_pred eEEecCCCccccCCCeeEEEEccc-ceEEeccCCCCCCCcccccccCccchhcccCCceeEEEEEEEEecCceeEeeccC
Q 008606 192 GSLKPAQKNFNHLKNEWEIFLEAT-STVDLCTEEDDSIPKQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNG 270 (560)
Q Consensus 192 ~~V~~a~~~y~~~~~~yeI~f~~~-T~I~~~~d~~~~iP~~~f~f~~i~dI~~~~~~~~VDVIGvV~~V~~~~~i~~k~G 270 (560)
+.|+.- .+..|+.|.-. -.|.+-+.-..+ .=+-.-|+++... ......|++.|+.+....
T Consensus 86 gevkqf-------knnlelkfkfgdyqiipketlggs----ggstllisevlkt-skqylsvlaqvvdiqssd------- 146 (213)
T 3u58_A 86 GEVKQF-------KNNLELKFKFGDYQIIPKETLGGS----GGSTLLISEVLKT-SKQYLSVLAQVVDIQSSD------- 146 (213)
T ss_dssp CEEEEC-------SSSEEEEECSSCCEEEESTTTTCS----TTCCBCHHHHTTC-CCSEEEEEEEEEEEEECS-------
T ss_pred ccHhhh-------ccceEEEEecCceEEechhhcCCC----CCceeehHHHHHH-hHHHHHHHHHhhccccCC-------
Confidence 999753 35577777653 234332211110 0012224555432 456888999988875432
Q ss_pred ceeeEEEEEEecCCC-cEEEEEEeCcchhh
Q 008606 271 METQRRILNLKDTSG-RSVELTLWGDFCNK 299 (560)
Q Consensus 271 ~~~~kr~i~L~D~Sg-~~I~vtLWg~~a~~ 299 (560)
+ ..-+.|.|.|. .++.+.++-+.|-+
T Consensus 147 k---nirlkicdnscnqelkvvifpdlcye 173 (213)
T 3u58_A 147 K---NIRLKICDNSCNQELKVVIFPDLCYE 173 (213)
T ss_dssp S---CEEEEEECTTCSCCEEEEECTTTTGG
T ss_pred C---ceEEEeecccccceeEEEEchhHhhH
Confidence 1 13477899995 68999999998865
No 28
>1miu_A BRCA2, breast cancer type 2 susceptibility protein; tumor suppressor, breast cancer susceptibility, DNA-binding; 3.10A {Mus musculus} SCOP: a.170.1.1 a.171.1.1 b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1iyj_B 1mje_A
Probab=97.36 E-value=0.0028 Score=70.61 Aligned_cols=183 Identities=13% Similarity=0.174 Sum_probs=125.9
Q ss_pred cEEEEEEEeC--CCCeEEEEEcchhHHHHHhhcccCcEEEEeeeEEecCCCccccCCCeeEEEEcccceEEeccCCCCCC
Q 008606 151 KVFSFDLLDS--DGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLCTEEDDSI 228 (560)
Q Consensus 151 kvf~~~L~D~--~g~~I~at~~~~~~~kf~~~l~eG~vY~Is~~~V~~a~~~y~~~~~~yeI~f~~~T~I~~~~d~~~~i 228 (560)
.++.+-++|. .....-.+||+..-+ ..+.|+||++|.|.+....... .+.-....+|+-.+.|.+++.+..+..+
T Consensus 511 p~~klRV~d~~~~~k~~iLSIW~P~ed-l~s~L~EG~~y~iy~L~~s~s~--~~~~~~~lqLtAtk~T~~~~L~~~~~~~ 587 (738)
T 1miu_A 511 TVWKLRVTSYKKKEKSALLSIWRPSSD-LSSLLTEGKRYRIYHLAVSKSK--SKFERPSIQLTATKRTQYQQLPVSSETL 587 (738)
T ss_dssp CEEEEEEEESSSSCCCEEEEEESCCHH-HHHHCCSSCEEEEEEECCCCCC--CSSSCCSCEEEEEEEEEEEEECCCHHHH
T ss_pred eeEEEEEEeccCCCceEEEEEeCCChH-HHhhccCCcEEEEEEeeccCCC--ccCccceEEEeecccceeEECCcchhhh
Confidence 3567778873 345788899997655 6677999999999987655443 2223346789999999999885322111
Q ss_pred Ccccc---cccCccchhc---ccCCceeEEEEEEEEecCceeEeeccCceeeEEEEEEecCCCcEEEEEEeCcchhhhhh
Q 008606 229 PKQQF---SFRHISEIES---AENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQ 302 (560)
Q Consensus 229 P~~~f---~f~~i~dI~~---~~~~~~VDVIGvV~~V~~~~~i~~k~G~~~~kr~i~L~D~Sg~~I~vtLWg~~a~~~~~ 302 (560)
+ ..| ..++|++|.+ .....-||++|+|+.|+... | ..-.+.|.|.+..-+-|.+|....++
T Consensus 588 ~-~~~~pR~~~~~~~l~~~~f~p~~~EvDivG~Vv~v~~~~------~---~~~~vylsD~~~nll~Ikf~~~l~eD--- 654 (738)
T 1miu_A 588 L-QVYQPRESLHFSRLSDPAFQPPCSEVDVVGVVVSVVKPI------G---LAPLVYLSDECLNLLVVKFGIDLNED--- 654 (738)
T ss_dssp T-TTCCCCCBCCSGGGGSSSCCTTTTEEEEEEEEEEEECCT------T---SCCEEEEECSSSCEEEEEESSCCCSC---
T ss_pred c-cccCCcceeeHHHhcCccccCCCCceeEEEEEEEEcccC------c---ccceEEEEcCCCcEEEEEEecCchhh---
Confidence 1 112 2456777765 45778999999999997532 2 12367889999888999999998632
Q ss_pred hHHhhhccCCccEEEEEEEEEecC--CCc-eecccCCeEEEECCCh----HHHHHHHHHHh
Q 008606 303 KLQEMVDVGFFPVLSVKSGKVNDF--SGK-SIGTIPSTQLFINPDF----AEAHELREWFD 356 (560)
Q Consensus 303 ~l~~~~~~~~~~VV~l~~~rV~~f--~G~-sLs~~~~S~i~iNPdi----pEa~~L~~w~~ 356 (560)
...+.+||+.+....-. .|. .|-.+..|.+.-||.- .+...|+.-..
T Consensus 655 -------~~~~~~va~sNL~~r~~~~~~ip~~~a~~~t~fs~~pk~~hl~~~~~~lk~~~~ 708 (738)
T 1miu_A 655 -------IKPRVLIAASNLQCQPESTSGVPTLFAGHFSIFSASPKEAYFQEKVNNLKHAIE 708 (738)
T ss_dssp -------CCSSCEEEEEEEECCSCCSSSCCCEEECTTCEEESSCCCTTTHHHHHHHTHHHH
T ss_pred -------CccccEEEEeeeEeeccccccCceEEeccceEEecCccHhHHHHHHHHHHHhhh
Confidence 35789999999988743 233 4556778888888842 34455555443
No 29
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A
Probab=97.21 E-value=0.0033 Score=67.94 Aligned_cols=89 Identities=10% Similarity=0.135 Sum_probs=66.3
Q ss_pred cccccccCccchhcccCCceeEEEEEEEEecCceeEeeccCceeeEEEEEEecCCCc-------EE-----EEEEeCcch
Q 008606 230 KQQFSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGR-------SV-----ELTLWGDFC 297 (560)
Q Consensus 230 ~~~f~f~~i~dI~~~~~~~~VDVIGvV~~V~~~~~i~~k~G~~~~kr~i~L~D~Sg~-------~I-----~vtLWg~~a 297 (560)
...|.|++|+++... .+..|||||+|+++++... ++ |+ -....|+|.|.|-. .+ .|.++.+..
T Consensus 33 ~~~y~y~~L~~a~~~-~~~~VnviGVVvd~~~P~~--T~-G~-D~~~t~tI~D~S~~~~~~~~~Gl~~~~~~v~iF~~~~ 107 (495)
T 1jb7_A 33 GHKYEYVELAKASLT-SAQPQHFYAVVIDATFPYK--TN-QE-RYICSLKIVDPTLYLKQQKGAGDASDYATLVLYAKRF 107 (495)
T ss_dssp ---CCBCCTTTSCSS-CCSCEEEEEEEEEECCCEE--CS-SS-CEEEEEEEEBTTBSBCCTTSSCSCBCCEEEEEEESSG
T ss_pred cCCCccEEHHHHHhc-cCCeEEEEEEEeecCCcee--cC-CC-eEEEEEEEEeCCCCcccccccccccCceEEEEECCCh
Confidence 356899999998753 5788999999999998863 32 43 36789999998754 37 999998764
Q ss_pred hhhhhhHHhhhccCCccEEEEEEEEEecCCCc
Q 008606 298 NKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGK 329 (560)
Q Consensus 298 ~~~~~~l~~~~~~~~~~VV~l~~~rV~~f~G~ 329 (560)
+. |.. + ...|+||.|+.++|..|+|.
T Consensus 108 e~----LP~-V-~~~GDII~LhrvkIq~~ng~ 133 (495)
T 1jb7_A 108 ED----LPI-I-HRAGDIIRVHRATLRLYNGQ 133 (495)
T ss_dssp GG----SCC-C-CEETCEEEEEEEEEEEETTE
T ss_pred HH----CCC-C-CCCCCEEEEEEEEEEEECCc
Confidence 43 221 1 03589999999999999997
No 30
>3u4v_A Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 1.80A {Tetrahymena thermophila}
Probab=96.97 E-value=0.01 Score=47.74 Aligned_cols=90 Identities=26% Similarity=0.450 Sum_probs=72.5
Q ss_pred cceeccccCCCCC--ceEEEEEEEEecccceeccCCCCCcEEEEEEEeCCCCeEEEEEcchhHHHHHhhcccCcEEEEee
Q 008606 114 RIIPIAALNPYQG--RWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISK 191 (560)
Q Consensus 114 ~~~pI~~L~p~~~--~w~Ik~RV~~k~~ir~~~n~~g~gkvf~~~L~D~~g~~I~at~~~~~~~kf~~~l~eG~vY~Is~ 191 (560)
...-|+.|.-+.. .+...+||+.|+. .|.|.. +.+.|-+.-.|+...+|..++|.. ++.=|..|++|+-|++.+
T Consensus 14 qtllisqlqvgknrfsfkfegrvvykss--tfqnqq-dskyffitaqdannqeinmsfwqk-vdqsyqtlkvgqyyyfig 89 (117)
T 3u4v_A 14 QTLLISQLQVGKNRFSFKFEGRVVYKSS--TFQNQQ-DSKYFFITAQDANNQEINMSFWQK-VDQSYQTLKVGQYYYFIG 89 (117)
T ss_dssp CEECGGGCCTTCCTTSCEEEEEEEEECC--CEECTT-SCEEEEEEEECTTSCEEEEEEESS-THHHHTTCCTTCEEEEES
T ss_pred hheehhhhhcccceeeEEeeeEEEEeec--cccccc-cccEEEEEeecCCCceechHHHHH-hhhhhheEeeceEEEEEc
Confidence 3456888888765 5788999999986 577654 458899999999999999999986 667778899999999999
Q ss_pred eEEecCCCccccCCCeeEEEEcc
Q 008606 192 GSLKPAQKNFNHLKNEWEIFLEA 214 (560)
Q Consensus 192 ~~V~~a~~~y~~~~~~yeI~f~~ 214 (560)
+.|+.- .+..|+.|.-
T Consensus 90 gevkqf-------knnlelkfkf 105 (117)
T 3u4v_A 90 GEVKQF-------KNNLELKFKF 105 (117)
T ss_dssp CEEEEE-------TTEEEEEEET
T ss_pred cchhhh-------ccceEEEEec
Confidence 999743 3557777654
No 31
>3mxn_A RECQ-mediated genome instability protein 1; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_A 3nbh_A
Probab=95.30 E-value=0.039 Score=50.02 Aligned_cols=93 Identities=17% Similarity=0.157 Sum_probs=63.1
Q ss_pred EEEEEEEEeCCCeEEEEEehhhhhhhcCCCHHHHHHhhhccCChhHHHHHHHH----hcCCeEEEEEEEeeeecCCeeeE
Q 008606 456 YLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRS----RVFNQYLFRLKIKEELYGDEQRV 531 (560)
Q Consensus 456 Y~l~~~i~D~Tgs~~~~~Fd~~ae~llG~sA~el~~~~~e~~d~~~~~~~l~~----~~~k~~~fkvkvk~e~y~~e~r~ 531 (560)
|.|.+.|+|+|+.+.+.+-+++-+.++|.|+.|+..++.......++.+.|.+ +.--..+++|..... .-
T Consensus 60 W~l~a~IsDGS~~LdV~f~~~VLt~lIGfS~~E~~~lkkdp~~~~~l~e~L~~~Q~~L~dl~clM~I~~~~~------~~ 133 (157)
T 3mxn_A 60 WSITAKVSDGTAYLDVDFVDEILTSLIGFSVPEMKQSKKDPLQYQKFLEGLQKCQRDLIDLCCLMTISFNPS------LS 133 (157)
T ss_dssp CBCEEEEECSSCEEEEEECHHHHHHHHSCCHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHCEEEEEEEEETT------TT
T ss_pred EEEEEEEeCCceeEEEEeeHHHHHhhhCCCHHHHHHHhhCHHHHHHHHHHHHHHHHHHHhhccEEEEEEcCC------CC
Confidence 67899999999999999999999999999999999987311112233344432 444456666655322 12
Q ss_pred EEEEEEeeeCChHHHHHHHHHHHH
Q 008606 532 KITVIRADQVNYSSESRYLLDLIS 555 (560)
Q Consensus 532 k~~v~~~~~vd~~~e~~~ll~~i~ 555 (560)
+-.|.++++++- +....|.+.|+
T Consensus 134 ~pVV~~l~d~s~-~~l~~L~kRl~ 156 (157)
T 3mxn_A 134 KAMVLALQDVNM-EHLENLKKRLN 156 (157)
T ss_dssp EEEEEEEECCCH-HHHHHHHHHTT
T ss_pred CCEEEEecCCCH-HHHHHHHHHhc
Confidence 457778887775 45555655554
No 32
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=95.17 E-value=0.71 Score=46.53 Aligned_cols=179 Identities=14% Similarity=0.127 Sum_probs=98.3
Q ss_pred CCceEEEEEEEEecccceeccCCCCCcEEEEEEE------eCCC------CeEEEEEcchhHHHHHhh-cccCcEEEEee
Q 008606 125 QGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL------DSDG------GEIRVTCFNAVVDRFYEI-IEVGRVYLISK 191 (560)
Q Consensus 125 ~~~w~Ik~RV~~k~~ir~~~n~~g~gkvf~~~L~------D~~g------~~I~at~~~~~~~kf~~~-l~eG~vY~Is~ 191 (560)
+++..|.+||.+.-++|...+ |. .+.+|.|. |++| .-|++++|+.+++..... |+.|+.+.|.+
T Consensus 5 mN~V~LiGrL~~dPelr~t~~--G~-~v~~f~LAv~r~~~~~~G~~~~~t~~i~vv~~g~~Ae~~~~~~l~KG~~V~VeG 81 (301)
T 1se8_A 5 MNHVYLIGALARDPELRYTGN--GM-AVFEATVAGEDRVIGNDGRERNLPWYHRVSILGKPAEWQAERNLKGGDAVVVEG 81 (301)
T ss_dssp EEEEEEEEEESSCCEEEECTT--SC-EEEEEEEEEEEEC-------CEEEEEEEEEEESHHHHHHHHTCCCTTCEEEEEE
T ss_pred eeEEEEEEEECCCceEEECCC--CC-EEEEEEEEEcCceECCCCCEecceEEEEEEEEcHHHHHHHhhCCCCCCEEEEEE
Confidence 467899999999988887643 32 67777764 2233 358999999999999999 99999999997
Q ss_pred eEEecCCCcccc--CCCe--eEEEEcccceEEeccCCCCCCCcccccccCccchhccc-CCceeEEEEEEEEecCceeEe
Q 008606 192 GSLKPAQKNFNH--LKNE--WEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIESAE-NNSIVDVIGIVISVNPSVPIL 266 (560)
Q Consensus 192 ~~V~~a~~~y~~--~~~~--yeI~f~~~T~I~~~~d~~~~iP~~~f~f~~i~dI~~~~-~~~~VDVIGvV~~V~~~~~i~ 266 (560)
..-. ..|.. -... ++|..+ .|+.+....... .. ....+ .+. .-..|-++|.|..--.++.
T Consensus 82 ~L~~---r~~~dkdG~~r~~~ev~a~---~i~~l~~~~~~~-~d-----~~gg~-rm~~mmN~V~L~GrL~~dPelr~-- 146 (301)
T 1se8_A 82 TLEY---RQWEAPEGGKRSAVNVKAL---RMEQLGTQPELI-QD-----AGGGV-RMSGAMNEVLVLGNVTRDPEIRY-- 146 (301)
T ss_dssp EEEE---EEEC-----CEEEEEEEEE---EEEECSSCCCEE-EC-----TTSCE-EEETCEEEEEEEEEECSCCEEEE--
T ss_pred EEEe---eeEECCCCCEEEEEEEEEe---EEEEeecccccc-cc-----ccccc-chhcceeEEEEEEEECcCCEEEE--
Confidence 5322 12221 1112 334332 344332100000 00 00000 000 1234668888876433322
Q ss_pred eccCceeeEEEEEE----ecCCCc------EEEEEEeCcchhhhhhhHHhhhccCCccEEEEE-EEEEecCCC
Q 008606 267 RKNGMETQRRILNL----KDTSGR------SVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVK-SGKVNDFSG 328 (560)
Q Consensus 267 ~k~G~~~~kr~i~L----~D~Sg~------~I~vtLWg~~a~~~~~~l~~~~~~~~~~VV~l~-~~rV~~f~G 328 (560)
+.+|....+-.|-+ .|..|. -+.|++||+.|+...+ | ..+..|.|. ..+...|.+
T Consensus 147 t~~G~~v~~f~lAv~~~~~d~~Ge~~~~t~~i~vvawg~~Ae~~~~-l------~KG~~V~V~GrL~~~~y~d 212 (301)
T 1se8_A 147 TPAGDAVLSLSIAVNENYQDRQGQRQEKVHYIDATLWRDLAENMKE-L------RKGDPVMIMGRLVNEGWTD 212 (301)
T ss_dssp CTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHHHHTT-C------CTTCEEEEEEEEEEEECC-
T ss_pred CCCCCEEEEEEEEEcCceEcCCCCcccccEEEEEEECCHHHHHHHh-c------CCCCEEEEEEEEeeeeEEC
Confidence 34576543333322 233332 5999999999886432 2 356666665 446666753
No 33
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=94.49 E-value=1 Score=44.31 Aligned_cols=176 Identities=15% Similarity=0.172 Sum_probs=99.3
Q ss_pred CCceEEEEEEEEecccceeccCCCCCcEEEEEEE------eCCCC------eEEEEEcchhHHHHHhhcccCcEEEEeee
Q 008606 125 QGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL------DSDGG------EIRVTCFNAVVDRFYEIIEVGRVYLISKG 192 (560)
Q Consensus 125 ~~~w~Ik~RV~~k~~ir~~~n~~g~gkvf~~~L~------D~~g~------~I~at~~~~~~~kf~~~l~eG~vY~Is~~ 192 (560)
+++..|.|||.+--++|...+ |. .+.+|.|. |++|. -|++++|+.+++.....|+.|+.+.|.+.
T Consensus 5 ~N~v~L~G~l~~dpelr~t~~--G~-~v~~f~lA~~~~~~~~~G~~~~~t~~~~v~~~g~~Ae~~~~~l~KG~~V~V~G~ 81 (264)
T 2fxq_A 5 LNQVFLIGTLTARPDMRYTPG--GL-AILDLNLAGQDAFTDESGQEREVPWYHRVRLLGRQAEMWGDLLEKGQLIFVEGR 81 (264)
T ss_dssp EEEEEEEEEESSCCCCEECTT--CC-EEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHHHHTTTCCTTCEEEEEEE
T ss_pred eeEEEEEEEeccCCeEEECCC--CC-EEEEEEEEECCcEECCCCCEecccEEEEEEEEchHHHHHHHhCCCCCEEEEEEE
Confidence 467899999999999987643 32 67777764 44442 48999999999999999999999999975
Q ss_pred EEecCCCcccc---CCCeeEEEEcccceEEeccCCCC-CCCcccccccCccchhc--c-cCCceeEEEEEEEEecCceeE
Q 008606 193 SLKPAQKNFNH---LKNEWEIFLEATSTVDLCTEEDD-SIPKQQFSFRHISEIES--A-ENNSIVDVIGIVISVNPSVPI 265 (560)
Q Consensus 193 ~V~~a~~~y~~---~~~~yeI~f~~~T~I~~~~d~~~-~iP~~~f~f~~i~dI~~--~-~~~~~VDVIGvV~~V~~~~~i 265 (560)
.-. ..|.. ....++|..+ .|..+..... ... +.... + ..-..|-++|.|..--.++.
T Consensus 82 L~~---~~~~~dG~~r~~~ev~a~---~i~~l~~~~~~~~~---------d~~g~~~m~~~~N~v~l~G~l~~dpe~r~- 145 (264)
T 2fxq_A 82 LEY---RQWEKDGEKKSEVQVRAE---FIDPLEGRGRETLE---------DARGQPRLRRALNQVILMGNLTRDPDLRY- 145 (264)
T ss_dssp EEE---C---------CCEEEEEE---EEEECCCC-----------------------CCCCEEEEEEEEESSCCCCEE-
T ss_pred EEe---eeEEeCCEEEEEEEEEEE---EEEECcCCcccccc---------ccccccccccceEEEEEEEEECCCCEEEE-
Confidence 322 12321 1123445443 3443321000 000 00000 0 01246778898886444432
Q ss_pred eeccCceeeEEEEEEecC-------CCcEEEEEEeCcchhhhhhhHHhhhccCCccEEEEE-EEEEecCC
Q 008606 266 LRKNGMETQRRILNLKDT-------SGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVK-SGKVNDFS 327 (560)
Q Consensus 266 ~~k~G~~~~kr~i~L~D~-------Sg~~I~vtLWg~~a~~~~~~l~~~~~~~~~~VV~l~-~~rV~~f~ 327 (560)
+.+|+...+-.|-+... .-.-+.|++||..|+... +| ..+..|.|. ..+...|.
T Consensus 146 -t~~G~~v~~f~lAv~~~~~g~~~~~t~~~~v~~wg~~Ae~~~-~l------~KG~~V~V~G~l~~~~~~ 207 (264)
T 2fxq_A 146 -TPQGTAVVRLGLAVNERRRGQEEERTHFLEVQAWRELAEWAS-EL------RKGDGLLVIGRLVNDSWT 207 (264)
T ss_dssp -CTTCCEEEEEEEEEECCC-------EEEEEEEEEHHHHHHHT-TC------CTTCEEEEEEEEEEEEEE
T ss_pred -CCCCCEEEEEEEEEcCCcCCCCccccEEEEEEEEChHHHHhh-hc------CCCCEEEEEEEEEeeEEE
Confidence 34576543333332211 112599999999988643 32 356666554 34555664
No 34
>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A*
Probab=94.17 E-value=0.37 Score=43.19 Aligned_cols=111 Identities=11% Similarity=0.017 Sum_probs=62.1
Q ss_pred ccchhcccCCceeEEEEEEEEecCc-eeEee--ccCceee-EEEEEEe-cC-------CCcEEEEEEeCcchhhhhhhHH
Q 008606 238 ISEIESAENNSIVDVIGIVISVNPS-VPILR--KNGMETQ-RRILNLK-DT-------SGRSVELTLWGDFCNKEGQKLQ 305 (560)
Q Consensus 238 i~dI~~~~~~~~VDVIGvV~~V~~~-~~i~~--k~G~~~~-kr~i~L~-D~-------Sg~~I~vtLWg~~a~~~~~~l~ 305 (560)
|+-|.++..+.++|++|.|+.+-.- ..++- -+.++-. -...... |. ...++.||||+.+|... .
T Consensus 5 f~llkdv~~~~F~Dl~~qVv~~~~~~~~~~LyVTDYT~N~~~~~~~~~~~~~~W~Gp~G~~tlqVtlwd~ha~~a----r 80 (143)
T 4hik_A 5 FSLLSQITPHQRCSFYAQVIKTWYSDKNFTLYVTDYTENELFFPMSPYTSSSRWRGPFGRFSIRCILWDEHDFYC----R 80 (143)
T ss_dssp CCCGGGCCSSCEEEEEEEEEEEEECSSCEEEEEECSCCCTTSCCBCTTCTTCSCCCCCBSCCEEEEECHHHHHHH----T
T ss_pred hhhHHhCCCCCeEEEEEEEEEEEcCCCeEEEEEecCCCCCcccccccCCCCccccCCCCcEEEEEEEECcHHHHH----H
Confidence 4445556679999999999986532 11111 0111100 0000100 11 22489999999998752 1
Q ss_pred hhhccCCccEEEEEEEEEecC-CCc---eecccC----CeEE-EECCChHHHHHHHHH
Q 008606 306 EMVDVGFFPVLSVKSGKVNDF-SGK---SIGTIP----STQL-FINPDFAEAHELREW 354 (560)
Q Consensus 306 ~~~~~~~~~VV~l~~~rV~~f-~G~---sLs~~~----~S~i-~iNPdipEa~~L~~w 354 (560)
+ ....+..|.|++++++.- +|. .|.... ...| .++|+.|.+++|..+
T Consensus 81 ~--~lk~Gd~v~L~Nv~iK~~~~g~LEG~l~~dr~~~~ki~v~~ld~~~~~lk~ll~R 136 (143)
T 4hik_A 81 N--YIKEGDYVVMKNVRTKIDHLGYLECILHGDSAKRYNMSIEKVDSEEPELNEIKSR 136 (143)
T ss_dssp T--TCCTTCEEEEEEEEEEECTTSCEEEEECCCTTCCSCCEEEEECTTCGGGHHHHHH
T ss_pred h--hCCCCCEEEEEeEEEeecCCceEEEEEcCCCCCCCcceEEEcCCCCHHHHHHHHH
Confidence 2 135689999999999853 452 232211 1223 467766888777654
No 35
>3ebe_A Protein MCM10 homolog; OB-fold, zinc finger, CCCH, DNA replication, metal-binding, zinc-finger, replication; 2.30A {Xenopus laevis} PDB: 3h15_A
Probab=93.66 E-value=0.45 Score=45.10 Aligned_cols=86 Identities=20% Similarity=0.248 Sum_probs=60.3
Q ss_pred cCCCCCCcceeccccC-----CC--CCceEEEEEEEEecccceeccCCCCCcEE-EEEEEeCC--CCeEEEEEcchhHHH
Q 008606 107 LKNEAPARIIPIAALN-----PY--QGRWAIKARVTAKGDLRRYNNARGDGKVF-SFDLLDSD--GGEIRVTCFNAVVDR 176 (560)
Q Consensus 107 ~~~~~~~~~~pI~~L~-----p~--~~~w~Ik~RV~~k~~ir~~~n~~g~gkvf-~~~L~D~~--g~~I~at~~~~~~~k 176 (560)
.+..+..++++|++|- |. -.+|.+.|-|+.|++.|.-.+ |+-| -+.|.|=. ...+...+|+++.++
T Consensus 30 ~~~~~~~k~~~l~~L~~~v~~~~~~e~dwv~~GVV~~Ks~pk~~~~----gk~y~~w~l~DL~~~~~~V~lfLFg~a~~~ 105 (200)
T 3ebe_A 30 ERKMNGRKLIRLAQLQNKIATEKLEEEDWVTFGVIVKKITPQSSNN----GKTFSIWRLNDLKDLDKYISLFLFGDVHKE 105 (200)
T ss_dssp HHHHTTCEECCGGGHHHHHHTTCSTTSCEEEEEEEEEEECC-----------CCEEEEEECSSSTTCCEEEEECHHHHHH
T ss_pred HHHhcCCeEEeHHHHHhhccCCCCCcCCEEEEEEEEecCCccCcCC----CCeEEEEEEEecCCCCcEEEEEEechHHHH
Confidence 3445567889998883 22 258999999999999987433 3333 33455433 367999999999999
Q ss_pred HHhhcccCcEEEEeeeEEecC
Q 008606 177 FYEIIEVGRVYLISKGSLKPA 197 (560)
Q Consensus 177 f~~~l~eG~vY~Is~~~V~~a 197 (560)
++ .+++|.|+.|-|..+.+.
T Consensus 106 ~~-k~~~G~ViaiLNP~i~~~ 125 (200)
T 3ebe_A 106 HW-KTDQGTVIGLLNANPMKP 125 (200)
T ss_dssp HT-TCCTTEEEEEESCEECCC
T ss_pred hc-CcCCceEEEEECCEEccC
Confidence 66 589999999999987644
No 36
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=92.34 E-value=0.44 Score=41.88 Aligned_cols=71 Identities=17% Similarity=0.316 Sum_probs=46.0
Q ss_pred ceeEEEEEEEEecCceeEeeccCceeeEEEEEEecCCCcEEEEEEeCcchhhhhhhHHhhhccCCccEEEEEEEEEecCC
Q 008606 248 SIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFS 327 (560)
Q Consensus 248 ~~VDVIGvV~~V~~~~~i~~k~G~~~~kr~i~L~D~Sg~~I~vtLWg~~a~~~~~~l~~~~~~~~~~VV~l~~~rV~~f~ 327 (560)
..|.++|+|.++.... ....++|.|.||..|++.+|.+..... .. ...+ ..+..|.+.| +++.|+
T Consensus 32 ~~V~iVG~V~~~~~~~----------~~~~~~ldD~TG~~I~~~~W~~~~~~~-~~-~~~~--~~g~yVrV~G-~l~~f~ 96 (132)
T 3kdf_D 32 SQVTIVGIIRHAEKAP----------TNIVYKIDDMTAAPMDVRQWVDTDDTS-SE-NTVV--PPETYVKVAG-HLRSFQ 96 (132)
T ss_dssp CEEEEEEEEEEEEECS----------SEEEEEEECSSSSCEEEEEEC-----------CCC--CTTCEEEEEE-EEEEET
T ss_pred EEEEEEEEEEEEEEcC----------CeEEEEEECCCCCEEEEEEEccCCCcc-cc-cccc--cCCCEEEEEE-EEEeEC
Confidence 5789999999985421 356899999999889999998764321 00 1112 3466666655 488899
Q ss_pred Cc-eecc
Q 008606 328 GK-SIGT 333 (560)
Q Consensus 328 G~-sLs~ 333 (560)
|+ .|..
T Consensus 97 g~~qi~~ 103 (132)
T 3kdf_D 97 NKKSLVA 103 (132)
T ss_dssp TEEEEEE
T ss_pred CEEEEEE
Confidence 96 5654
No 37
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=92.11 E-value=0.4 Score=42.37 Aligned_cols=71 Identities=15% Similarity=0.324 Sum_probs=46.3
Q ss_pred ceeEEEEEEEEecCceeEeeccCceeeEEEEEEecCCCcEEEEEEeCcchhhhhhhHHhhhccCCccEEEEEEEEEecCC
Q 008606 248 SIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFS 327 (560)
Q Consensus 248 ~~VDVIGvV~~V~~~~~i~~k~G~~~~kr~i~L~D~Sg~~I~vtLWg~~a~~~~~~l~~~~~~~~~~VV~l~~~rV~~f~ 327 (560)
..|.++|+|.++..-. ....++|.|.|| .|++.+|.+........ .+.+ ..+.+|.+.+ +++.|+
T Consensus 37 ~~V~iVG~V~~~~~~~----------~~~~~~ldD~TG-~I~~~~W~~~~~~~~~~-~~~~--~~g~yVrV~G-~v~~f~ 101 (136)
T 4gop_B 37 GQLTFVAVVRNISRNA----------TNVAYSVEDGTG-QIEVRQWLDSSSDDSSK-ASEI--RNNVYVRVLG-TLKSFQ 101 (136)
T ss_dssp CEEEEEEEEEEEEECS----------SEEEEEEECSSC-EEEEEEECC---------CCSC--CTTCEEEEEE-EEEEET
T ss_pred EEEEEEEEEEEEEecC----------CeEEEEEECCCC-CEEEEEecccCCccccc-cccc--CCCCEEEEEE-EEEEeC
Confidence 5799999999985421 357899999999 89999998754311000 1112 3567776665 578899
Q ss_pred Cc-eecc
Q 008606 328 GK-SIGT 333 (560)
Q Consensus 328 G~-sLs~ 333 (560)
|+ .|..
T Consensus 102 g~~qi~~ 108 (136)
T 4gop_B 102 NRRSISS 108 (136)
T ss_dssp TEEEEEE
T ss_pred CEEEEEE
Confidence 96 5654
No 38
>3u4z_A Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.30A {Tetrahymena thermophila}
Probab=91.37 E-value=4.5 Score=32.08 Aligned_cols=87 Identities=13% Similarity=0.190 Sum_probs=65.5
Q ss_pred cCCCCCceEEEEEEEEecccceeccCCCCCcEEEEEEEeCCC-CeEEEEEcchhHHHHHhhcccCcEEEEeeeEEecCCC
Q 008606 121 LNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDG-GEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQK 199 (560)
Q Consensus 121 L~p~~~~w~Ik~RV~~k~~ir~~~n~~g~gkvf~~~L~D~~g-~~I~at~~~~~~~kf~~~l~eG~vY~Is~~~V~~a~~ 199 (560)
|....+-.++-|.|+.... ..+-+.+.++|... .+.++.+|.+++-.|.+.+..++||++..|.-...+
T Consensus 8 lktskqylsvlaqvvdiqs---------sdknirlkicdnscnqelkvvifpdlcyewrdkfsinkwyyfnefvrqiyn- 77 (109)
T 3u4z_A 8 LKTSKQYLSVLAQVVDIQS---------SDKNIRLKICDNSCNQELKVVIFPDLCYEWRDKFSINKWYYFNEFVRQIYN- 77 (109)
T ss_dssp TTCCCSEEEEEEEEEEEEC---------CSSCEEEEEECSSCSSCEEEEECTTHHHHHTTTCCTTCEEEEEEEEEEESS-
T ss_pred HHHHHHHHHHHHHHhhhhc---------CCCceEEEeecccccceeEEEEchhHHHHHHhhcchhhhhhHHHHHHHHhh-
Confidence 4455566788888886422 22568899999654 689999999999999999999999999998544332
Q ss_pred ccccCCCeeEEEEcccceEEeccC
Q 008606 200 NFNHLKNEWEIFLEATSTVDLCTE 223 (560)
Q Consensus 200 ~y~~~~~~yeI~f~~~T~I~~~~d 223 (560)
....+.-+-++.|++..|
T Consensus 78 ------devqlknnihssikesdd 95 (109)
T 3u4z_A 78 ------DEVQLKNNIHSSIKESDD 95 (109)
T ss_dssp ------SCEEEECCTTCEEEECSS
T ss_pred ------hHHhHhhhhhhhhhcccc
Confidence 245666666889998743
No 39
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=91.37 E-value=0.58 Score=39.42 Aligned_cols=66 Identities=15% Similarity=0.065 Sum_probs=53.5
Q ss_pred CCceEEEEEEEEecccceeccCCCCCcEEEEEEE----eCCCCe-------EEEEEcchhHHHHHhhcccCcEEEEeeeE
Q 008606 125 QGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL----DSDGGE-------IRVTCFNAVVDRFYEIIEVGRVYLISKGS 193 (560)
Q Consensus 125 ~~~w~Ik~RV~~k~~ir~~~n~~g~gkvf~~~L~----D~~g~~-------I~at~~~~~~~kf~~~l~eG~vY~Is~~~ 193 (560)
+++..+.||+++--++|...+ |. .+.+|.|. ..+.+. |++++|+..++...+.|+.|+-+.|.+..
T Consensus 2 ~N~v~L~G~l~~dpelR~t~~--G~-~v~~f~lA~~~~~~~~~~~r~~~~~~~vv~~g~~Ae~~~~~l~KG~~V~V~G~L 78 (104)
T 1txy_A 2 TNRLVLSGTVCRAPLRKVSPS--GI-PHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHSITVGSRITVQGFI 78 (104)
T ss_dssp CEEEEEEEEEEEEEEEEECTT--SC-EEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSTTHHHHTTCCTTCEEEEEEEE
T ss_pred cEEEEEEEEECCCceEEECCC--CC-EEEEEEEEEeCccccCCceeceeEEEEEEEEhHHHHHHHhhCCCCCEEEEEEEE
Confidence 457889999999999997543 32 57777775 224567 99999999999999999999999999864
No 40
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}
Probab=90.72 E-value=1.5 Score=36.82 Aligned_cols=66 Identities=14% Similarity=0.031 Sum_probs=50.5
Q ss_pred CCceEEEEEEEEecccceeccCCCCCcEEEEEEE-----eCCCCe------EEEEEcchhHHHHHhhcccCcEEEEeeeE
Q 008606 125 QGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL-----DSDGGE------IRVTCFNAVVDRFYEIIEVGRVYLISKGS 193 (560)
Q Consensus 125 ~~~w~Ik~RV~~k~~ir~~~n~~g~gkvf~~~L~-----D~~g~~------I~at~~~~~~~kf~~~l~eG~vY~Is~~~ 193 (560)
|++..+.||+++--++|.-. .|. .+.+|.|. ++.|++ |.|++|+..++.... +..|+-+.|.++.
T Consensus 2 MN~v~L~GrLt~dPelRyTp--sG~-~V~~f~LA~~s~~~e~g~~r~~~f~i~vv~wGk~AE~~~~-~~kGs~V~VeGrL 77 (101)
T 3en2_A 2 INRLQLVATLVEREVMRYTP--AGV-PIVNCLLSYSGQAMEAQAARQVEFSIEALGAGKMASVLDR-IAPGTVLECVGFL 77 (101)
T ss_dssp CCCEEEEEEEEEECCCEECT--TCC-EEEEEEEEEEEEEECC--EEEEEEEEEEEEETHHHHHHTT-SCTTCEEEEEEEE
T ss_pred cCEEEEEEEECcCccEEECC--CCC-EEEEEEEEEcceEecCCCcEeeeEEEEEEEEhHHHHHHhh-cCCCCEEEEEEEE
Confidence 57889999999999998543 343 57777765 334432 999999999998875 7899999999985
Q ss_pred E
Q 008606 194 L 194 (560)
Q Consensus 194 V 194 (560)
-
T Consensus 78 ~ 78 (101)
T 3en2_A 78 A 78 (101)
T ss_dssp E
T ss_pred E
Confidence 3
No 41
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=90.57 E-value=2.1 Score=36.86 Aligned_cols=67 Identities=15% Similarity=0.145 Sum_probs=51.2
Q ss_pred CCceEEEEEEEEecccceeccCCCCCcEEEEEEEe-----CCCCe------EEEEEcchhHHHHHhhcccCcEEEEeeeE
Q 008606 125 QGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLD-----SDGGE------IRVTCFNAVVDRFYEIIEVGRVYLISKGS 193 (560)
Q Consensus 125 ~~~w~Ik~RV~~k~~ir~~~n~~g~gkvf~~~L~D-----~~g~~------I~at~~~~~~~kf~~~l~eG~vY~Is~~~ 193 (560)
|++..+.||+++--++|... .|. .+.+|.|.- +.|.+ |.|++|+..++.. ..|+.|+-+.|.++.
T Consensus 1 MNkviL~GrL~~dPelRyTp--sG~-~V~~f~LA~~~~~~~~g~~r~~~~~i~vv~~Gk~AE~~-~~l~kGs~V~VeGrL 76 (115)
T 3fhw_A 1 MNTLELSARVLECGAMRHTP--AGL-PALELLLVHESEVVEAGHPRRVELTISAVALGDLALLL-ADTPLGTEMQVQGFL 76 (115)
T ss_dssp CEEEEEEEEEEEECCCEECT--TSC-EEEEEEEEEEEECCCCC--CEEEEEEEEEEETHHHHHH-TTCCTTCEEEEEEEE
T ss_pred CCEEEEEEEECcCcceEECC--CCC-EEEEEEEEEcceeecCCCeeeeeEEEEEEEEhHHHHhh-hccCCCCEEEEEEEE
Confidence 45678999999999999543 342 577887752 23322 9999999999987 889999999999985
Q ss_pred Ee
Q 008606 194 LK 195 (560)
Q Consensus 194 V~ 195 (560)
-.
T Consensus 77 ~t 78 (115)
T 3fhw_A 77 AP 78 (115)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 42
>3ebe_A Protein MCM10 homolog; OB-fold, zinc finger, CCCH, DNA replication, metal-binding, zinc-finger, replication; 2.30A {Xenopus laevis} PDB: 3h15_A
Probab=90.24 E-value=0.47 Score=44.93 Aligned_cols=82 Identities=13% Similarity=0.209 Sum_probs=53.7
Q ss_pred ccccCccchhcc-cCC----ceeEEEEEEEEecCceeEeeccCceeeEEEEEEecCCC--cEEEEEEeCcchhhhhhhHH
Q 008606 233 FSFRHISEIESA-ENN----SIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSG--RSVELTLWGDFCNKEGQKLQ 305 (560)
Q Consensus 233 f~f~~i~dI~~~-~~~----~~VDVIGvV~~V~~~~~i~~k~G~~~~kr~i~L~D~Sg--~~I~vtLWg~~a~~~~~~l~ 305 (560)
..|+.|++|... ..+ ...=++|+|++-++... +++|+... ...|.|..+ .+|.|-|+|+-..+
T Consensus 36 ~k~~~l~~L~~~v~~~~~~e~dwv~~GVV~~Ks~pk~--~~~gk~y~--~w~l~DL~~~~~~V~lfLFg~a~~~------ 105 (200)
T 3ebe_A 36 RKLIRLAQLQNKIATEKLEEEDWVTFGVIVKKITPQS--SNNGKTFS--IWRLNDLKDLDKYISLFLFGDVHKE------ 105 (200)
T ss_dssp CEECCGGGHHHHHHTTCSTTSCEEEEEEEEEEECC---------CCE--EEEEECSSSTTCCEEEEECHHHHHH------
T ss_pred CeEEeHHHHHhhccCCCCCcCCEEEEEEEEecCCccC--cCCCCeEE--EEEEEecCCCCcEEEEEEechHHHH------
Confidence 578899999762 222 23346799999988765 34566433 466766665 57999999987654
Q ss_pred hhhccCCccEEEEEEEEEec
Q 008606 306 EMVDVGFFPVLSVKSGKVND 325 (560)
Q Consensus 306 ~~~~~~~~~VV~l~~~rV~~ 325 (560)
.|....|.||||-+..+-.
T Consensus 106 -~~k~~~G~ViaiLNP~i~~ 124 (200)
T 3ebe_A 106 -HWKTDQGTVIGLLNANPMK 124 (200)
T ss_dssp -HTTCCTTEEEEEESCEECC
T ss_pred -hcCcCCceEEEEECCEEcc
Confidence 2556789999999888753
No 43
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=89.79 E-value=1.4 Score=37.52 Aligned_cols=68 Identities=12% Similarity=0.131 Sum_probs=53.9
Q ss_pred CCCCceEEEEEEEEecccceeccCCCCCcEEEEEEEe------CCCCeEEEEEcchhHHHHHhhcccCcEEEEeee
Q 008606 123 PYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLD------SDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKG 192 (560)
Q Consensus 123 p~~~~w~Ik~RV~~k~~ir~~~n~~g~gkvf~~~L~D------~~g~~I~at~~~~~~~kf~~~l~eG~vY~Is~~ 192 (560)
..+....+.||+++--++|...+ |...+.+|.|.= ++.+-|++++|+.+|+...+.|+.|+-+.|.+=
T Consensus 9 ~~~~~v~LiGrL~~DPelR~t~~--g~~~va~f~lAv~~~~~~~~t~fi~vv~wgk~AE~~~~yl~KG~~V~VeGr 82 (108)
T 3koj_A 9 SHMNSCILQATVVEAPQLRYAQD--NQTPVAEMVVQFPGLSSKDAPARLKVVGWGAVAQELQDRCRLNDEVVLEGR 82 (108)
T ss_dssp SSCEEEEEEEEEEEEEEEEECTT--SSSEEEEEEEEECC-----CCEEEEEEEETHHHHHHHHHCCTTCEEEEEEE
T ss_pred cccceEEEEEEECCCCEEEEeCC--CCEEEEEEEEEECCcccCCCcEEEEEEEEhHHHHHHHHhCCCCCEEEEEEE
Confidence 34567889999999999987643 323677887752 245679999999999999999999999999874
No 44
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=89.78 E-value=1.5 Score=41.52 Aligned_cols=65 Identities=11% Similarity=0.188 Sum_probs=51.6
Q ss_pred CCceEEEEEEEEecccceeccCCCCCcEEEEEEEe--------------CCCCeEEEEEcchhHHHHHhhcccCcEEEEe
Q 008606 125 QGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLD--------------SDGGEIRVTCFNAVVDRFYEIIEVGRVYLIS 190 (560)
Q Consensus 125 ~~~w~Ik~RV~~k~~ir~~~n~~g~gkvf~~~L~D--------------~~g~~I~at~~~~~~~kf~~~l~eG~vY~Is 190 (560)
.+..+|.+||++.-++|...+ + ..+.+|.|.= .+..-|++++|+.+++.+...|+.|+.+.|.
T Consensus 4 ~N~V~LiGrL~~DPElR~T~~--G-~~Va~FsLAvn~R~~d~~~Ge~~d~~T~wi~VvawgklAE~v~~~L~KG~~V~Ve 80 (199)
T 3eiv_A 4 ETVITVVGNLVDDPELRFTPS--G-AAVAKFRVASTPRTFDRQTNEWKDGESLFLTCSVWRQAAENVAESLQRGMRVIVQ 80 (199)
T ss_dssp CCEEEEEEEESSCCEEEECTT--C-CEEEEEEEEECC-----------CCCCEEEEEEEETHHHHHHHHHCCTTCEEEEE
T ss_pred ccEEEEEEEECCCCeEEECCC--C-CEEEEEEEEEcCcccccCCCcEecCccEEEEEEEEhHHHHHHHHhcCCCCEEEEE
Confidence 457899999999999987653 3 2577777652 1345699999999999999999999999998
Q ss_pred ee
Q 008606 191 KG 192 (560)
Q Consensus 191 ~~ 192 (560)
.-
T Consensus 81 Gr 82 (199)
T 3eiv_A 81 GR 82 (199)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 45
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=89.35 E-value=1.2 Score=39.23 Aligned_cols=77 Identities=14% Similarity=0.138 Sum_probs=49.8
Q ss_pred EEEEEEEeCCCeEEEEEehhhhhhhcCCCHHHHHHhhhccCChhHHHHHHHHhcCCeEEEEEEEeeeecCCeeeEEEEEE
Q 008606 457 LLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVI 536 (560)
Q Consensus 457 ~l~~~i~D~Tgs~~~~~Fd~~ae~llG~sA~el~~~~~e~~d~~~~~~~l~~~~~k~~~fkvkvk~e~y~~e~r~k~~v~ 536 (560)
.+.+.|.|+||++.+..|.+..+. ++ .+...+ -.|. .++|..+...|++. ...++.
T Consensus 54 ~~~~~ldD~TG~I~~~~W~~~~~~----~~----------~~~~~~------~~g~--yVrV~G~v~~f~g~--~qi~~~ 109 (136)
T 4gop_B 54 NVAYSVEDGTGQIEVRQWLDSSSD----DS----------SKASEI------RNNV--YVRVLGTLKSFQNR--RSISSG 109 (136)
T ss_dssp EEEEEEECSSCEEEEEEECC----------------------CCSC------CTTC--EEEEEEEEEEETTE--EEEEES
T ss_pred eEEEEEECCCCCEEEEEecccCCc----cc----------cccccc------CCCC--EEEEEEEEEEeCCE--EEEEEE
Confidence 357788999999999999864321 00 000000 0122 55677777789874 556777
Q ss_pred EeeeC-ChHHHHHHHHHHHHhh
Q 008606 537 RADQV-NYSSESRYLLDLISKS 557 (560)
Q Consensus 537 ~~~~v-d~~~e~~~ll~~i~~~ 557 (560)
++.|+ |+.++.-.+|+.|...
T Consensus 110 ~ir~v~d~Nei~~H~Le~i~~h 131 (136)
T 4gop_B 110 HMRPVIDYNEVMFHRLEAVHAH 131 (136)
T ss_dssp EEEECSSHHHHHHHHHHHHHHH
T ss_pred EEEECCCccHHHHHHHHHHHHH
Confidence 77777 5889999999988654
No 46
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=88.90 E-value=1.1 Score=39.52 Aligned_cols=66 Identities=18% Similarity=0.229 Sum_probs=51.8
Q ss_pred CCceEEEEEEEEecccceeccCCCCCcEEEEEEE------eCCCC------eEEEEEcchhHHHHHhhcccCcEEEEeee
Q 008606 125 QGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL------DSDGG------EIRVTCFNAVVDRFYEIIEVGRVYLISKG 192 (560)
Q Consensus 125 ~~~w~Ik~RV~~k~~ir~~~n~~g~gkvf~~~L~------D~~g~------~I~at~~~~~~~kf~~~l~eG~vY~Is~~ 192 (560)
+....|.|||++--++|...+ | ..+.+|.|. |++|. -|.+++|+.+++.....|+.|+.+.|.+.
T Consensus 2 mN~V~L~GrL~~dPelr~t~~--G-~~v~~f~lA~~~~~~~~~G~~~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~ 78 (134)
T 2vw9_A 2 FNKVIMVGRLTRNVELKYLPS--G-SAAATIGLATSRRFKKQDGTLGEEVCFIDARLFGRTAEIANQYLSKGSSVLIEGR 78 (134)
T ss_dssp CCCEEEEEEESSCCEEEECTT--S-CEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEE
T ss_pred eeEEEEEEEECCCCEEEECCC--C-CEEEEEEEEEeCCeECCCCCCccccEEEEEEEEcHHHHHHHHhCCCCCEEEEEEE
Confidence 467899999999888887543 3 257777663 33343 59999999999999999999999999975
Q ss_pred E
Q 008606 193 S 193 (560)
Q Consensus 193 ~ 193 (560)
.
T Consensus 79 L 79 (134)
T 2vw9_A 79 L 79 (134)
T ss_dssp E
T ss_pred E
Confidence 3
No 47
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei}
Probab=88.23 E-value=20 Score=34.99 Aligned_cols=176 Identities=12% Similarity=0.062 Sum_probs=94.5
Q ss_pred CCceEEEEEEEEecccceeccCCCCCcEEEEEEEeC-------CCCeEEEEEcc-hhHHHHHhhcccCcEEEEeeeEEec
Q 008606 125 QGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDS-------DGGEIRVTCFN-AVVDRFYEIIEVGRVYLISKGSLKP 196 (560)
Q Consensus 125 ~~~w~Ik~RV~~k~~ir~~~n~~g~gkvf~~~L~D~-------~g~~I~at~~~-~~~~kf~~~l~eG~vY~Is~~~V~~ 196 (560)
.++..+.||+++- ++|...+ |.-.+|+|.+.=. +.+-|.+++|+ .+++...+.|+.|+-+.|.+ ++..
T Consensus 30 ~N~viLiGrLtrd-ElRyT~~--g~~a~~~lav~~~~~~~ge~~~df~~vv~wg~k~AE~~~~yl~kG~~V~VeG-rL~~ 105 (257)
T 4dni_A 30 VNHCVMLGVVQNI-QEGFVFE--DKVLQFTLITDFEGPSPGDPDKDFHTVRVFDSDYSSRVKEQLRDGEWFLVTG-RLRM 105 (257)
T ss_dssp SEEEEEEEEEEEE-EEEEETT--EEEEEEEEEEECCCCCSSCCCEEEEEEEECSHHHHHHHHHHCCTTCEEEEEE-EEEE
T ss_pred CcEEEEEEEEece-EEEECCC--CCEEEEEEEEEecCCCCCCCcccEEEEEEECCHHHHHHHHhccCCCEEEEEE-EEEE
Confidence 4678899999999 9986542 2113566654311 23356777999 89999999999999999876 2222
Q ss_pred CCCccccCCCeeEEEEcccceEEeccCCCCCCCcccccccCccchhc---ccCCceeEEEEEEEEecCceeEeeccCcee
Q 008606 197 AQKNFNHLKNEWEIFLEATSTVDLCTEEDDSIPKQQFSFRHISEIES---AENNSIVDVIGIVISVNPSVPILRKNGMET 273 (560)
Q Consensus 197 a~~~y~~~~~~yeI~f~~~T~I~~~~d~~~~iP~~~f~f~~i~dI~~---~~~~~~VDVIGvV~~V~~~~~i~~k~G~~~ 273 (560)
...+=-.....+|+.+.. |.+. ... +....+... +..-..|-+||.+ . .|.-.. +. |+.+
T Consensus 106 ~~~~dG~kr~~~evva~~---v~~~---~G~-------~~~v~~~~g~~~M~~lNkV~LiGrL-~-DPElR~-t~-G~~V 168 (257)
T 4dni_A 106 VPQYDGSMRKYYHYPVIQ---VHPG---CGS-------VLKVKLASGAGHMKSVNSVTLVGVV-H-DIQSGF-VY-EDAV 168 (257)
T ss_dssp EEEECSSSSSEEEEEEEE---ECTT---TCE-------EEEGGGSCSSCTTSCEEEEEEEEEE-E-EEEEEE-ET-TEEE
T ss_pred eECCCCCcEEEEEEEEEE---EEec---CCc-------ceeeecccccccccccCEEEEEEEc-C-CCEEEE-eC-CcEE
Confidence 111101112345666543 1111 000 111111111 1112457889999 3 332222 23 6543
Q ss_pred eEEEEEE----ecCCC-------cEEEEEEeCcc--hhhhhhhHHhhhccCCccEEEEE-EEEEecCCC
Q 008606 274 QRRILNL----KDTSG-------RSVELTLWGDF--CNKEGQKLQEMVDVGFFPVLSVK-SGKVNDFSG 328 (560)
Q Consensus 274 ~kr~i~L----~D~Sg-------~~I~vtLWg~~--a~~~~~~l~~~~~~~~~~VV~l~-~~rV~~f~G 328 (560)
.+-.|-. .|..+ .-+.|++||+. |+ +.++| ..+.-|.+. ..+...|..
T Consensus 169 a~FslAv~~~~~~~~~~e~~~~Tdw~~Vv~wgk~~~AE-i~~~L------~KG~~V~VeGrL~tr~~~D 230 (257)
T 4dni_A 169 TQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAE-VKQKV------KEGNVVCVNGRLRLSPQLE 230 (257)
T ss_dssp EEEEEEEEEEECCCTTCSCEEEEEEEEEEEESHHHHHH-HHHHC------CTTCEEEEEEEEEEEEEEC
T ss_pred EEEEEEECCCccCCCCceEccceEEEEEEEECCccHHH-HHhhC------CCCCEEEEEEEEEeeeEEc
Confidence 3222221 22221 24899999998 77 43332 356666554 445666643
No 48
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=88.20 E-value=6.1 Score=35.86 Aligned_cols=72 Identities=15% Similarity=0.234 Sum_probs=48.6
Q ss_pred ceeEEEEEEEEecCceeEeeccCceeeEEEEEEecCCCcEEEEEEeCcchhhhhhhHHhhhccCCccEEEEEEEEEecCC
Q 008606 248 SIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFS 327 (560)
Q Consensus 248 ~~VDVIGvV~~V~~~~~i~~k~G~~~~kr~i~L~D~Sg~~I~vtLWg~~a~~~~~~l~~~~~~~~~~VV~l~~~rV~~f~ 327 (560)
..|+|+|+|+++... . .+..++|-|.||..|+|.+|=+..... ..+. .....|.+|-++| +|+.|.
T Consensus 48 ~~V~IvGiVv~~~~~------~----~~~~ytIDD~TG~~I~cv~w~~~~~~~-~~~~--~~l~~G~~VrV~G-~v~~fr 113 (159)
T 3kf6_A 48 RWIQIVGYIAAIDIY------E----GKHVLTVDDCSGMVLRVVFIIQDDFSM-SKRA--ISMSPGNVVCVFG-KINSFR 113 (159)
T ss_dssp CEEEEEEEEEEEEEE------T----TEEEEEEECSSSCEEEEEEEGGGCHHH-HHHH--TTCCTTCEEEEEE-EEECSS
T ss_pred EEEEEEEEEEEEEEe------C----CEEEEEEecCCCCeEEEEEEccCCCCc-cccc--ccCCCCCEEEEEE-EEEeeC
Confidence 478999999998632 1 356788889999889999998863211 0111 1224577777765 677888
Q ss_pred Cc-eecc
Q 008606 328 GK-SIGT 333 (560)
Q Consensus 328 G~-sLs~ 333 (560)
|. .|..
T Consensus 114 ~~rqI~~ 120 (159)
T 3kf6_A 114 SEVELIA 120 (159)
T ss_dssp SSCEEEE
T ss_pred CEEEEEE
Confidence 85 5654
No 49
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A
Probab=88.19 E-value=0.75 Score=43.01 Aligned_cols=85 Identities=15% Similarity=0.123 Sum_probs=61.8
Q ss_pred cceeccccC---CCCCceEEEEEEEEecccceeccCCCC-CcEEEEEEEeCC----CCeEEEEEcchhHHHHHhhcccCc
Q 008606 114 RIIPIAALN---PYQGRWAIKARVTAKGDLRRYNNARGD-GKVFSFDLLDSD----GGEIRVTCFNAVVDRFYEIIEVGR 185 (560)
Q Consensus 114 ~~~pI~~L~---p~~~~w~Ik~RV~~k~~ir~~~n~~g~-gkvf~~~L~D~~----g~~I~at~~~~~~~kf~~~l~eG~ 185 (560)
.++.|++.- .....-.+.|.|+.....+.- .+|. .-...|.|.|.. +..|.+.+|....+.+-....+||
T Consensus 28 ~~~~~r~~l~~~~~g~~VNviGVVvd~~~P~~S--~rGtkD~~~TltI~D~S~~~~~~gL~v~iF~~~~e~LP~V~~~GD 105 (187)
T 1qzg_A 28 TFQSIRSSQELQKKNTIVNLFGIVKDFTPSRQS--LHGTKDWVTTVYLWDPTCDTSSIGLQIHLFSKQGNDLPVIKQVGQ 105 (187)
T ss_dssp EEECHHHHTSCCSSCEEEEEEEEEEEEEEEEEC--SSTTCCEEEEEEEECTTSCTTSCCEEEEEEESSSSCSCCCCSTTC
T ss_pred eEEEHHHHHhhccCCCEEEEEEEEEEccCceec--CCCCccEEEEEEEEeCCCCCCCCceEEEEECCChhhCCCCCCCCC
Confidence 455655522 223456788888877666542 1344 467889999976 678999999987777766669999
Q ss_pred EEEEeeeEEecCCCc
Q 008606 186 VYLISKGSLKPAQKN 200 (560)
Q Consensus 186 vY~Is~~~V~~a~~~ 200 (560)
|+.+++++|+.-+..
T Consensus 106 IIlL~rvkiq~~~g~ 120 (187)
T 1qzg_A 106 PLLLHQITLRSYRDR 120 (187)
T ss_dssp EEEEEEEEEEEETTE
T ss_pred EEEEEEEEEEEECCe
Confidence 999999999876543
No 50
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=87.44 E-value=1.5 Score=43.46 Aligned_cols=71 Identities=17% Similarity=0.325 Sum_probs=46.9
Q ss_pred ceeEEEEEEEEecCceeEeeccCceeeEEEEEEecCCCcEEEEEEeCcchhhhhhhHHhhhccCCccEEEEEEEEEecCC
Q 008606 248 SIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFS 327 (560)
Q Consensus 248 ~~VDVIGvV~~V~~~~~i~~k~G~~~~kr~i~L~D~Sg~~I~vtLWg~~a~~~~~~l~~~~~~~~~~VV~l~~~rV~~f~ 327 (560)
..|+++|+|.++..- .....++|.|.||.+|++.+|.+..... .. .+.+ ..+.+|.+.+ +|+.|+
T Consensus 72 ~~V~ivG~V~~i~~~----------~~~~~~~L~D~TG~~I~~k~W~~~~~~~-~~-~~~~--~~G~yVrV~G-~v~~f~ 136 (270)
T 2pi2_A 72 SQVTIVGIIRHAEKA----------PTNIVYKIDDMTAAPMDVRQWVDTDDTS-SE-NTVV--PPETYVKVAG-HLRSFQ 136 (270)
T ss_dssp SEEEEEEEEEEEEEC----------SSEEEEEEECSSSSCEEEEEECC---------CCCC--CTTCEEEEEE-EEEEET
T ss_pred EEEEEEEEEEEEEec----------cceEEEEEECCCCCEEEEEEEcCcCccc-ch-hhcC--CCCCEEEEEE-EEEecC
Confidence 468999999997432 1467899999999779999998753210 00 0112 3567777765 888999
Q ss_pred Cc-eecc
Q 008606 328 GK-SIGT 333 (560)
Q Consensus 328 G~-sLs~ 333 (560)
|+ .|..
T Consensus 137 g~~qi~i 143 (270)
T 2pi2_A 137 NKKSLVA 143 (270)
T ss_dssp TEEEEEE
T ss_pred CeeEEEE
Confidence 96 5654
No 51
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=86.86 E-value=3.7 Score=44.73 Aligned_cols=99 Identities=18% Similarity=0.155 Sum_probs=70.2
Q ss_pred CcceeccccCCC--CCceEEEEEEEEecccceeccCCCCCcEEEEEEEeCCCCeEEEEEcch-----hHHHHHhhcccCc
Q 008606 113 ARIIPIAALNPY--QGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA-----VVDRFYEIIEVGR 185 (560)
Q Consensus 113 ~~~~pI~~L~p~--~~~w~Ik~RV~~k~~ir~~~n~~g~gkvf~~~L~D~~g~~I~at~~~~-----~~~kf~~~l~eG~ 185 (560)
+..+.|.+|... ....+|+|||.++ |. .|++.=++|.| .++.|++.+..+ ..-++...|..|+
T Consensus 48 ~~~~~i~~l~~~~~g~~V~v~Gwv~~~---R~------~gkl~Fi~LrD-~~g~iQ~v~~~~~~~~~~~~~~~~~l~~es 117 (548)
T 3i7f_A 48 LKYTEIEELVPAMAEKTVTIRARVQAV---RG------KGNMVFLFLRK-GIYTCQALVMKSETISKEFVQFCQKISAES 117 (548)
T ss_dssp CCBCCGGGCSGGGTTCEEEEEEEEEEE---EE------CSSEEEEEEEE-TTEEEEEEEECSSSSCHHHHHHHHTCCTTE
T ss_pred CceEEhhhcchhcCCCEEEEEEEEEEE---ec------CCCeEEEEEEE-CCeeEEEEEECCCccCHHHHHHHhCCCCCC
Confidence 467788888743 3578999999864 43 34666677999 456999999752 3345677899999
Q ss_pred EEEEeeeEEecCCCccccCCCeeEEEEcccceEEec
Q 008606 186 VYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLC 221 (560)
Q Consensus 186 vY~Is~~~V~~a~~~y~~~~~~yeI~f~~~T~I~~~ 221 (560)
++.+.+..++...+.-+.....+||..++-..+..+
T Consensus 118 ~V~V~G~v~~~~~~~~~~~~~~~El~~~~i~vls~a 153 (548)
T 3i7f_A 118 ICDITGIVKAVEKPIEKATQQDVEIHVTSIAVVSLA 153 (548)
T ss_dssp EEEEEEEEEECSSCCTTSSSCSEEEEEEEEEEEECC
T ss_pred EEEEEEEEEeCCcccccCCCCcEEEEEeEEEEEecC
Confidence 999998665543322123357899999877777665
No 52
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=86.85 E-value=1.4 Score=38.13 Aligned_cols=65 Identities=23% Similarity=0.399 Sum_probs=50.9
Q ss_pred CCceEEEEEEEEecccceeccCCCCCcEEEEEEE------eCC-C------CeEEEEEcc-hhHHHHHhhcccCcEEEEe
Q 008606 125 QGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL------DSD-G------GEIRVTCFN-AVVDRFYEIIEVGRVYLIS 190 (560)
Q Consensus 125 ~~~w~Ik~RV~~k~~ir~~~n~~g~gkvf~~~L~------D~~-g------~~I~at~~~-~~~~kf~~~l~eG~vY~Is 190 (560)
+.+..|.|||.+--++|...+ | ..+.+|.|. |.+ | .-|++++|+ .+++.....|+.|+.+.|.
T Consensus 6 ~N~v~l~Grl~~dpelr~t~~--G-~~v~~f~lA~~~~~~~~~~G~~~~~t~~~~v~~wg~~~Ae~~~~~l~KG~~V~V~ 82 (124)
T 3ulp_A 6 LNKIMLIGRVGCEPDIKILNG--G-DKVATFSLATNEFWRDRNTNELKSKTDWHRIVVYDQNIVDLIDKYLRKGRRVYVQ 82 (124)
T ss_dssp EEEEEEEEEECSCCEEEECTT--S-CEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEECCHHHHHHHHHHCCTTCEEEEE
T ss_pred ceEEEEEEEECCCcEEEECCC--C-CEEEEEEEEEccceecccCCcEecccEEEEEEEEEchHHHHHHhhcCCCCEEEEE
Confidence 467899999999888887643 3 257777764 332 3 349999999 8999999999999999998
Q ss_pred ee
Q 008606 191 KG 192 (560)
Q Consensus 191 ~~ 192 (560)
+-
T Consensus 83 G~ 84 (124)
T 3ulp_A 83 GS 84 (124)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 53
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A
Probab=86.62 E-value=1.7 Score=38.35 Aligned_cols=66 Identities=15% Similarity=0.045 Sum_probs=52.8
Q ss_pred CceEEEEEEEEecccceeccCCCCCcEEEEEEE-----eCCCC------eEEEEEcchhHHHHHhhcccCcEEEEeeeEE
Q 008606 126 GRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL-----DSDGG------EIRVTCFNAVVDRFYEIIEVGRVYLISKGSL 194 (560)
Q Consensus 126 ~~w~Ik~RV~~k~~ir~~~n~~g~gkvf~~~L~-----D~~g~------~I~at~~~~~~~kf~~~l~eG~vY~Is~~~V 194 (560)
++..+.||+++--++|...+ | ..+.+|.|. ++.|. .|+|++|+.+++...+.|+.|+-+.|.++.-
T Consensus 20 NkViLiGrL~~DPElRyTps--G-~~Va~ftLA~~~~~~~~G~~~~~~~~i~vv~wGk~AE~~~~yl~KGs~V~VeGrL~ 96 (134)
T 1v1q_A 20 NRLVLSGTVCRAPLRKVSPS--G-IPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHSITVGSRITVQGFIS 96 (134)
T ss_dssp EEEEEEEEEEEEEEEEECTT--C-CEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESTGGGGGGTTCCTTCEEEEEEEEE
T ss_pred eEEEEEEEECcCCceEECCC--C-CEEEEEEEEEeCcCcCCCCEecceEEEEEEEEhHHHHHHHHhcCCCCEEEEEEEEE
Confidence 77999999999999997543 3 267777764 33341 3999999999999999999999999998743
No 54
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=86.46 E-value=1.7 Score=37.10 Aligned_cols=67 Identities=16% Similarity=0.180 Sum_probs=52.5
Q ss_pred CCCceEEEEEEEEecccceeccCCCCCcEEEEEEE-e-----C----CCCeEEEEEcchhHHHHHhhcccCcEEEEeeeE
Q 008606 124 YQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL-D-----S----DGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGS 193 (560)
Q Consensus 124 ~~~~w~Ik~RV~~k~~ir~~~n~~g~gkvf~~~L~-D-----~----~g~~I~at~~~~~~~kf~~~l~eG~vY~Is~~~ 193 (560)
+++...|.|||++--++|...+ | ..+.+|.|. + + +..-|++++|+.+++.....|+.|+.+.|.+..
T Consensus 4 mmN~v~l~G~l~~dpe~r~t~~--G-~~v~~f~la~~~~~~~~~g~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~l 80 (116)
T 3vdy_A 4 MFNQVMLVGRLTKDPDLRYTSA--G-AAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRI 80 (116)
T ss_dssp CCCCEEEEEEESSCCEEEECTT--S-CEEEEEEEEEECSSCCSSSCCCEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEEE
T ss_pred eEeEEEEEEEEccCcEEEECCC--C-CEEEEEEEEEeccccCCCCccccEEEEEEEECHHHHHHHHhCCCCCEEEEEEEE
Confidence 4678999999999888887543 3 257777764 2 1 224599999999999999999999999999753
No 55
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=86.03 E-value=1.6 Score=39.62 Aligned_cols=67 Identities=19% Similarity=0.226 Sum_probs=52.4
Q ss_pred CCCceEEEEEEEEecccceeccCCCCCcEEEEEEE------eC-CC------CeEEEEEcchhHHHHHhhcccCcEEEEe
Q 008606 124 YQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL------DS-DG------GEIRVTCFNAVVDRFYEIIEVGRVYLIS 190 (560)
Q Consensus 124 ~~~~w~Ik~RV~~k~~ir~~~n~~g~gkvf~~~L~------D~-~g------~~I~at~~~~~~~kf~~~l~eG~vY~Is 190 (560)
.+.+..|.|||++.-++|...+ | ..+.+|.|. |+ .| .-|++++|+.+++.....|+.|+.+.|.
T Consensus 7 ~mN~V~LiGrL~~dPelr~t~~--G-~~v~~f~lA~~~~~~d~~~Ge~~e~t~~i~vv~wg~~Ae~~~~~l~KG~~V~Ve 83 (158)
T 3tqy_A 7 GVNKVILIGNLGQDPEVRYTPN--G-NAVANVTLATSTTWRDKQTGELQERTEWHRIAFFNRLAEIVGEYLRKGSKIYIE 83 (158)
T ss_dssp CEEEEEEEEEESSSCEEEECTT--C-CEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEEETHHHHHHHHHCCTTCEEEEE
T ss_pred ccCEEEEEEEECCCCEEEECCC--C-CEEEEEEEEEcCceeccCCCCEeeeeEEEEEEEEhHHHHHHHhhcCCCCEEEEE
Confidence 4678999999999988887653 3 256677653 43 23 3479999999999999999999999998
Q ss_pred eeE
Q 008606 191 KGS 193 (560)
Q Consensus 191 ~~~ 193 (560)
+..
T Consensus 84 G~L 86 (158)
T 3tqy_A 84 GSL 86 (158)
T ss_dssp EEE
T ss_pred EEE
Confidence 863
No 56
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=85.83 E-value=1.3 Score=40.01 Aligned_cols=67 Identities=16% Similarity=0.267 Sum_probs=52.3
Q ss_pred CCCCceEEEEEEEEecccceeccCCCCCcEEEEEEE-eC------C-----CCeEEEEEcchhHHHHHhhcccCcEEEEe
Q 008606 123 PYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL-DS------D-----GGEIRVTCFNAVVDRFYEIIEVGRVYLIS 190 (560)
Q Consensus 123 p~~~~w~Ik~RV~~k~~ir~~~n~~g~gkvf~~~L~-D~------~-----g~~I~at~~~~~~~kf~~~l~eG~vY~Is 190 (560)
|.+.+..|.|||++--++|...+ | ..+.+|.|. +. + ..-|++++|+.+++.....|+.|+-+.|.
T Consensus 14 ~~~N~V~LiGrL~~DPelr~t~~--G-~~va~f~lAv~~r~~~~~~Ge~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~Ve 90 (153)
T 1z9f_A 14 SFFNKIILIGRLVRDPEERYTLS--G-TPVTTFTIAVDRVPRKNAPDDAQTTDFFRIVTFGRLAEFARTYLTKGRLVLVE 90 (153)
T ss_dssp SCCCCEEEEEEESSCCEEEECC-----CEEEEEEEEEEC-----------CEEEEEEEEEHHHHHHHHHHCCTTCEEEEE
T ss_pred cceeEEEEEEEECCCCEEEECCC--C-CEEEEEEEEEcCCccccCCCCEeeeEEEEEEEECHHHHHHHhhCCCCCEEEEE
Confidence 55678999999999988887643 3 267777775 21 1 33599999999999999999999999998
Q ss_pred ee
Q 008606 191 KG 192 (560)
Q Consensus 191 ~~ 192 (560)
+-
T Consensus 91 Gr 92 (153)
T 1z9f_A 91 GE 92 (153)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 57
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=85.42 E-value=5.5 Score=33.36 Aligned_cols=64 Identities=13% Similarity=0.080 Sum_probs=49.6
Q ss_pred CceEEEEEEEEecccceeccCCCCCcEEEEEEE-----eCCCC-----e-EEEEEcchhHHHHHhhcccCcEEEEeeeEE
Q 008606 126 GRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL-----DSDGG-----E-IRVTCFNAVVDRFYEIIEVGRVYLISKGSL 194 (560)
Q Consensus 126 ~~w~Ik~RV~~k~~ir~~~n~~g~gkvf~~~L~-----D~~g~-----~-I~at~~~~~~~kf~~~l~eG~vY~Is~~~V 194 (560)
++..+.||+++--++|...+ |. .+.+|.|. ++.|. . |++++|+.+|+ ... |+.|+-+.|.++.-
T Consensus 8 Nkv~LiG~L~~dPelRytp~--G~-~v~~f~lA~~~~~~~~g~~~~~~~~i~vv~~gk~Ae-~~~-l~KG~~v~veGrL~ 82 (103)
T 3k8a_A 8 NLVSLAALIEKAFPIRYTPA--GI-PVLDIILKHESWQEENGQQCLVQLEIPARILGRQAE-EWQ-YRQGDCATVEGFLA 82 (103)
T ss_dssp EEEEEEEEEEEECCCEECTT--SC-EEEEEEEEEEEEEEETTEEEEEEEEEEEEEEHHHHH-HST-TCTTCEEEEEEEEE
T ss_pred cEEEEEEEECCCCceEECCC--CC-EEEEEEEEEcccCccCCCEEEeeEEEEEEEEhHHhh-hhc-cCCCCEEEEEEEEE
Confidence 67899999999999996542 32 67788775 23342 2 88999999999 554 99999999998753
No 58
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=85.24 E-value=4.4 Score=35.30 Aligned_cols=75 Identities=9% Similarity=0.139 Sum_probs=48.0
Q ss_pred EEEEEEeCCC-eEEEEEehhhhhhhcCCCHHHHHHhhhccCChhHHHHHHHHhcCCeEEEEEEEeeeecCCeeeEEEEEE
Q 008606 458 LQAQIQDQTG-LTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVI 536 (560)
Q Consensus 458 l~~~i~D~Tg-s~~~~~Fd~~ae~llG~sA~el~~~~~e~~d~~~~~~~l~~~~~k~~~fkvkvk~e~y~~e~r~k~~v~ 536 (560)
+.+.|.|+|| ++.+..|.+....- .+ . ..+ -.|. .++|..+...|++. ....+.
T Consensus 50 ~~~~ldD~TG~~I~~~~W~~~~~~~-----~~----~------~~~------~~g~--yVrV~G~l~~f~g~--~qi~~~ 104 (132)
T 3kdf_D 50 IVYKIDDMTAAPMDVRQWVDTDDTS-----SE----N------TVV------PPET--YVKVAGHLRSFQNK--KSLVAF 104 (132)
T ss_dssp EEEEEECSSSSCEEEEEEC------------------------CCC------CTTC--EEEEEEEEEEETTE--EEEEEE
T ss_pred EEEEEECCCCCEEEEEEEccCCCcc-----cc----c------ccc------cCCC--EEEEEEEEEeECCE--EEEEEE
Confidence 5788999999 99999998653210 00 0 000 0122 45666666789875 556777
Q ss_pred EeeeC-ChHHHHHHHHHHHHhh
Q 008606 537 RADQV-NYSSESRYLLDLISKS 557 (560)
Q Consensus 537 ~~~~v-d~~~e~~~ll~~i~~~ 557 (560)
++.|+ |+.+..-.+|+.|...
T Consensus 105 ~ir~v~d~Nei~~H~Le~i~~h 126 (132)
T 3kdf_D 105 KIMPLEDMNEFTTHILEVINAH 126 (132)
T ss_dssp EEEECSSTHHHHHHHHHHHHHH
T ss_pred EEEEcCCccHHHHHHHHHHHHH
Confidence 77777 5888889999988654
No 59
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=84.96 E-value=4.4 Score=43.50 Aligned_cols=99 Identities=13% Similarity=0.113 Sum_probs=66.2
Q ss_pred CcceeccccCCC---CCceEEEEEEEEecccceeccCCCCCcE-EEEEEEeCCCCeEEEEEcch-------hHHHHHhhc
Q 008606 113 ARIIPIAALNPY---QGRWAIKARVTAKGDLRRYNNARGDGKV-FSFDLLDSDGGEIRVTCFNA-------VVDRFYEII 181 (560)
Q Consensus 113 ~~~~pI~~L~p~---~~~w~Ik~RV~~k~~ir~~~n~~g~gkv-f~~~L~D~~g~~I~at~~~~-------~~~kf~~~l 181 (560)
+..+.|.+|... ....+|.|||.++ |. .|++ .=++|.| .++.|++++..+ ..-++...|
T Consensus 21 ~~~~~~~~l~~~~~~g~~V~v~GwV~~~---R~------~g~~l~Fi~LrD-~~g~iQvv~~~~~~~~~~~~~~~~~~~l 90 (487)
T 1eov_A 21 QKRVKFVDLDEAKDSDKEVLFRARVHNT---RQ------QGATLAFLTLRQ-QASLIQGLVKANKEGTISKNMVKWAGSL 90 (487)
T ss_dssp CCCCCGGGCCTTTTTTCEEEEEEEEEEE---EE------CSSSEEEEEEEE-TTEEEEEEEECCSSSSSCHHHHHHHTTC
T ss_pred cceeEHHHhcccccCCCEEEEEEEEEEe---ec------cCCccEEEEEEE-CCccEEEEEeccccccccHHHHHHHhcC
Confidence 345667887653 3568999999874 43 2455 4456899 566999999543 223445679
Q ss_pred ccCcEEEEeeeEEecCCCccccCCCeeEEEEcccceEEec
Q 008606 182 EVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLC 221 (560)
Q Consensus 182 ~eG~vY~Is~~~V~~a~~~y~~~~~~yeI~f~~~T~I~~~ 221 (560)
..|+++.+.+.-++...+.-+.....+||...+-..+..+
T Consensus 91 ~~e~~V~V~G~v~~~~~~~~~~~~g~~El~~~~i~vl~~a 130 (487)
T 1eov_A 91 NLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISET 130 (487)
T ss_dssp CTTCEEEEEEEEEECSSCCTTSSEEEEEEEEEEEEEEECC
T ss_pred CCCCEEEEEEEEEeCCCCCcCCCCCcEEEEEEEEEEeecc
Confidence 9999999998765554332112235799998876666665
No 60
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=84.58 E-value=2.2 Score=39.16 Aligned_cols=65 Identities=18% Similarity=0.288 Sum_probs=51.6
Q ss_pred CCceEEEEEEEEecccceeccCCCCCcEEEEEEE------eC--------CCCeEEEEEcchhHHHHHhhcccCcEEEEe
Q 008606 125 QGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL------DS--------DGGEIRVTCFNAVVDRFYEIIEVGRVYLIS 190 (560)
Q Consensus 125 ~~~w~Ik~RV~~k~~ir~~~n~~g~gkvf~~~L~------D~--------~g~~I~at~~~~~~~kf~~~l~eG~vY~Is 190 (560)
+++.+|.+||++--++|...+ | ..+.+|.|. |. +..-|++++|+.+++.....|+.|+.+.|.
T Consensus 4 ~N~V~LiG~L~~dPelr~t~~--G-~~va~f~lAv~~~~~~~~~Ge~~d~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~Ve 80 (168)
T 3afp_A 4 DTTITIVGNLTADPELRFTSS--G-AAVVNFTVASTPRIYDRQSGEWKDGEALFLRCNIWREAAENVAESLTRGARVIVT 80 (168)
T ss_dssp CCEEEEEEEESSSCCCEECTT--S-CEEEEEEEEECC--------CCCCCCCEEEEEEEEHHHHHHHHHHCCTTCEEEEE
T ss_pred cCEEEEEEEECCCCEEEECCC--C-CEEEEEEEEEccccccccCCcEecCCcEEEEEEEehHHHHHHHHhCCCCCEEEEE
Confidence 567899999999999987653 3 257777765 21 234699999999999999999999999998
Q ss_pred ee
Q 008606 191 KG 192 (560)
Q Consensus 191 ~~ 192 (560)
+-
T Consensus 81 Gr 82 (168)
T 3afp_A 81 GR 82 (168)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 61
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=82.95 E-value=2.3 Score=37.99 Aligned_cols=66 Identities=20% Similarity=0.233 Sum_probs=52.7
Q ss_pred CCceEEEEEEEEecccceeccCCCCCcEEEEEEE------eC-------CCCeEEEEEcchhHHHHHhhcccCcEEEEee
Q 008606 125 QGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL------DS-------DGGEIRVTCFNAVVDRFYEIIEVGRVYLISK 191 (560)
Q Consensus 125 ~~~w~Ik~RV~~k~~ir~~~n~~g~gkvf~~~L~------D~-------~g~~I~at~~~~~~~kf~~~l~eG~vY~Is~ 191 (560)
+....|.+||++--++|...+ | ..+.+|.|. |+ +..-|.+++|+.+++.....|+.|+.+.|.+
T Consensus 5 mN~v~L~GrL~~dPelr~t~~--G-~~v~~f~lA~~~~~~~~~~Ge~~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G 81 (145)
T 1qvc_A 5 VNKVILVGNLGQDPEVRYMPN--G-GAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEG 81 (145)
T ss_dssp EEEEEEEEEESSCCEEECCSS--S-CCEEEEEEEECCCCSCCSSSSCCCCCEEEEEEEETHHHHHHHHHCCTTCEEEEEE
T ss_pred eEEEEEEEEeCCCCEEEECCC--C-CEEEEEEEEEcCCcccccCCcEecccEEEEEEEehHHHHHHHHhcCCCCEEEEEE
Confidence 567899999999888887643 3 267888875 22 2346999999999999999999999999987
Q ss_pred eE
Q 008606 192 GS 193 (560)
Q Consensus 192 ~~ 193 (560)
..
T Consensus 82 ~L 83 (145)
T 1qvc_A 82 QL 83 (145)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 62
>3u58_A Tetrahymena TEB1 AB; tetrahymena, telomerase, TEB1, processivity factor, DNA BIND protein-DNA complex; HET: DNA; 2.61A {Tetrahymena thermophila}
Probab=82.85 E-value=12 Score=32.76 Aligned_cols=85 Identities=13% Similarity=0.183 Sum_probs=63.3
Q ss_pred cCCCCCceEEEEEEEEecccceeccCCCCCcEEEEEEEeCCC-CeEEEEEcchhHHHHHhhcccCcEEEEeeeEEecCCC
Q 008606 121 LNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDG-GEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQK 199 (560)
Q Consensus 121 L~p~~~~w~Ik~RV~~k~~ir~~~n~~g~gkvf~~~L~D~~g-~~I~at~~~~~~~kf~~~l~eG~vY~Is~~~V~~a~~ 199 (560)
|....+-.++-|.|+.... ..+-+.+.++|... .+.++.+|.+++-.|.+.+..++||++..|.-...+
T Consensus 126 lktskqylsvlaqvvdiqs---------sdknirlkicdnscnqelkvvifpdlcyewrdkfsinkwyyfnefvrqiyn- 195 (213)
T 3u58_A 126 LKTSKQYLSVLAQVVDIQS---------SDKNIRLKICDNSCNQELKVVIFPDLCYEWRDKFSINKWYYFNEFVRQIYN- 195 (213)
T ss_dssp TTCCCSEEEEEEEEEEEEE---------CSSCEEEEEECTTCSCCEEEEECTTTTGGGTTCCCTTCEEEEEEEEECCSS-
T ss_pred HHHhHHHHHHHHHhhcccc---------CCCceEEEeecccccceeEEEEchhHhhHhhhhcchhhhhhHHHHHHHHhh-
Confidence 4555667788999986422 12568899999654 689999999999999999999999999998543332
Q ss_pred ccccCCCeeEEEEcccceEEec
Q 008606 200 NFNHLKNEWEIFLEATSTVDLC 221 (560)
Q Consensus 200 ~y~~~~~~yeI~f~~~T~I~~~ 221 (560)
....+.-+-++.|++.
T Consensus 196 ------devqlknnihssikes 211 (213)
T 3u58_A 196 ------DEVQLKNNIHSSIKES 211 (213)
T ss_dssp ------SSCEEECCTTCEEEEC
T ss_pred ------hhhhhhhhhhhhhccc
Confidence 2345555566777775
No 63
>4dam_A Single-stranded DNA-binding protein 1; OB-fold; 1.70A {Streptomyces coelicolor}
Probab=79.70 E-value=2.6 Score=36.87 Aligned_cols=63 Identities=16% Similarity=0.132 Sum_probs=50.9
Q ss_pred CCceEEEEEEEEecccceeccCCCCCcEEEEEEE------eC--------CCCeEEEEEcchhHHHHHhhcccCcEEEEe
Q 008606 125 QGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL------DS--------DGGEIRVTCFNAVVDRFYEIIEVGRVYLIS 190 (560)
Q Consensus 125 ~~~w~Ik~RV~~k~~ir~~~n~~g~gkvf~~~L~------D~--------~g~~I~at~~~~~~~kf~~~l~eG~vY~Is 190 (560)
.....|.|||.+--++|...+ | .+.+|.|. |. +..-|++++|+.+++.....|+.|+-+.|.
T Consensus 15 ~N~V~LiGrL~~dPelr~t~~--G--~v~~fslAv~~~~~d~~~Ge~~d~~t~w~~v~~wg~~Ae~~~~~l~KG~~V~Ve 90 (128)
T 4dam_A 15 EIMICAVGNVATTPVFRDLAN--G--PSVRFRLAVTARYWDREKNAWTDGHTNFFTVWANRQLATNASGSLAVGDPVVVQ 90 (128)
T ss_dssp CCEEEEEEEECSCCEEEEETT--E--EEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEHHHHHHHHHHCCTTCEEEEE
T ss_pred eeEEEEEEEECCCCEEEEcCC--C--CEEEEEEEEcCceecccCCceecCCcEEEEEEEEcHHHHHHHHhcCCCCEEEEE
Confidence 456899999999999887643 3 67777764 42 234689999999999999999999999998
Q ss_pred e
Q 008606 191 K 191 (560)
Q Consensus 191 ~ 191 (560)
+
T Consensus 91 G 91 (128)
T 4dam_A 91 G 91 (128)
T ss_dssp E
T ss_pred E
Confidence 7
No 64
>3rn5_A Interferon-inducible protein AIM2; OB fold, DNA binding, cytosolic, immune system-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 3rn2_A*
Probab=78.72 E-value=43 Score=31.24 Aligned_cols=176 Identities=13% Similarity=0.127 Sum_probs=117.1
Q ss_pred EEEEEEEEecccceeccCCCCCcEEEEEEEeCCCCeEEEEEcchhHHHHHhhcccCcEEEEeeeEEecCCCccccCCCee
Q 008606 129 AIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEW 208 (560)
Q Consensus 129 ~Ik~RV~~k~~ir~~~n~~g~gkvf~~~L~D~~g~~I~at~~~~~~~kf~~~l~eG~vY~Is~~~V~~a~~~y~~~~~~y 208 (560)
-..|.|+.-.+.=.|....|..++|+-+.+- +..-.++.+|+-.. .+.+..++++.||+..-. .-
T Consensus 14 P~~VmVLkaTepF~Ye~~E~~~~MFHATVAT-etqfF~VKVfn~~L---KeKF~pk~iI~ISdY~~~-----------~g 78 (208)
T 3rn5_A 14 CLPVMVLKAKKPFTFETQEGKQEMFHATVAT-EKEFFFVKVFNTLL---KDKFIPKRIIIIARYYRH-----------SG 78 (208)
T ss_dssp CEEEEEEEECCCEEEEETTEEEEEEEEEEEC-SSCEEEEEECCGGG---GGTCCTTCEEEEESBEEC-----------SS
T ss_pred CeEEEEEeccCCeeeecccccceEEEEEEee-ccceEEEEEecchh---hhhcCCCcEEEEEecccc-----------cc
Confidence 4567777777777777665544689988888 78899999999644 567889999999987422 22
Q ss_pred EEEEcccceEEecc-CCCCCCCcccc----cccCccchhcccCCceeEEEEEEEEecCceeEeeccCceeeEEEEEEecC
Q 008606 209 EIFLEATSTVDLCT-EEDDSIPKQQF----SFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDT 283 (560)
Q Consensus 209 eI~f~~~T~I~~~~-d~~~~iP~~~f----~f~~i~dI~~~~~~~~VDVIGvV~~V~~~~~i~~k~G~~~~kr~i~L~D~ 283 (560)
-|-.++.|.|.++. |.-..||...- .--+|++|.....+.+|+=+=.|.... .++ ......|.|+
T Consensus 79 fLEi~~~SsVse~~~dq~~eVp~~ii~~A~~TPKI~~L~~q~~Gt~V~G~F~v~KK~------v~~----~~~~YeI~Dn 148 (208)
T 3rn5_A 79 FLEVNSASRVLDAESDQKVNVPLNIIRKAGETPKINTLQTQPLGTIVNGLFVVQKVT------EKK----KNILFDLSDN 148 (208)
T ss_dssp CEEECTTSEEEECCTTCCCCCCHHHHHHHHSCCCHHHHHTSCSSCEEEEEEEEEEEE------ECS----SEEEEEEEET
T ss_pred eEEEecccEEEEccCCceeecCHHHHHhcccCcchhhhhcCCCCCEEeEEEEEEEEE------ecc----ceEEEEEecC
Confidence 36677888998874 23345675321 223478887767788776544433321 111 2446789999
Q ss_pred CCcEEEEEEeCcchhhhhhhHHhhhccCCccEEEEEEEEEecCCCc-eecccCCeEE
Q 008606 284 SGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGK-SIGTIPSTQL 339 (560)
Q Consensus 284 Sg~~I~vtLWg~~a~~~~~~l~~~~~~~~~~VV~l~~~rV~~f~G~-sLs~~~~S~i 339 (560)
+| .|+|...|.+..- ...+++=+-|....++...++ .|.+...|-|
T Consensus 149 TG-~MeVvv~G~~~~i---------~CEeGDKLrL~cFeL~~~~~~~qL~s~~HSfi 195 (208)
T 3rn5_A 149 TG-KMEVLGVRNEDTM---------KCKEGDKVRLTFFTLSKNGEKLQLTSGVHSTI 195 (208)
T ss_dssp TE-EEEEEEECSTGGG---------SCCTTCEEEEEEEEEEECSSSEEEECCTTCEE
T ss_pred CC-cEEEEEeccCccc---------ccCCCCeeEEEEEEEeccCCeeeEEEecceeE
Confidence 99 7999999997542 345677666666666654454 5766555544
No 65
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=78.72 E-value=13 Score=39.43 Aligned_cols=100 Identities=12% Similarity=0.019 Sum_probs=65.6
Q ss_pred CcceeccccCCCC-CceEEEEEEEEecccceeccCCCCC-cEEEEEEEeCCCCeEEEEEcchhHHHH--HhhcccCcEEE
Q 008606 113 ARIIPIAALNPYQ-GRWAIKARVTAKGDLRRYNNARGDG-KVFSFDLLDSDGGEIRVTCFNAVVDRF--YEIIEVGRVYL 188 (560)
Q Consensus 113 ~~~~pI~~L~p~~-~~w~Ik~RV~~k~~ir~~~n~~g~g-kvf~~~L~D~~g~~I~at~~~~~~~kf--~~~l~eG~vY~ 188 (560)
...+.|++|.... ...+|+|||.++ |. .| ++.=++|.|. ++.|++.+..+....+ ...|..|+++.
T Consensus 17 ~~~~~i~~~~~~~g~~V~v~Gwv~~~---R~------~Gk~~~Fi~LrD~-sg~iQvv~~~~~~~~~~~~~~l~~g~~V~ 86 (456)
T 3m4p_A 17 PIVCNIRDAAGLEGKLVTFKGWAYHI---RK------ARKTLIFVELRDG-SGYCQCVIFGKELCEPEKVKLLTRECSLE 86 (456)
T ss_dssp CCCEECCSTTCCCSSEEEEEEEEEEE---EC------CSSSEEEEEEECS-SCEEEEEEESTTTTCHHHHTTCCTTCEEE
T ss_pred ceEEEhhhhhhcCCCEEEEEEEEEEE---ec------CCCceEEEEEEeC-CccEEEEEecccchhhHHhhcCCCccEEE
Confidence 3557889996654 478999999874 33 23 3555679994 5689999976322222 23689999999
Q ss_pred EeeeEEecCCCcccc---CCCeeEEEEcccceEEecc
Q 008606 189 ISKGSLKPAQKNFNH---LKNEWEIFLEATSTVDLCT 222 (560)
Q Consensus 189 Is~~~V~~a~~~y~~---~~~~yeI~f~~~T~I~~~~ 222 (560)
+.+--++...+.-++ +...+||..++-..+..+.
T Consensus 87 V~G~v~~~~~~~~~~~~~t~g~~El~~~~i~vl~~a~ 123 (456)
T 3m4p_A 87 ITGRLNAYAGKNHPPEIADILNLEMQVTEWKVIGESP 123 (456)
T ss_dssp EEEEEECCCSSSCCCSCTTBCSSEEEEEEEEEEECCC
T ss_pred EEeEEEecCCcccCcccCCCCcEEEEEeEEEEEecCC
Confidence 997655433222111 2267999998777666653
No 66
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=78.57 E-value=6.4 Score=38.72 Aligned_cols=75 Identities=8% Similarity=0.117 Sum_probs=48.4
Q ss_pred EEEEEEeCCC-eEEEEEehhhhhhhcCCCHHHHHHhhhccCChhHHHHHHHHhcCCeEEEEEEEeeeecCCeeeEEEEEE
Q 008606 458 LQAQIQDQTG-LTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELYGDEQRVKITVI 536 (560)
Q Consensus 458 l~~~i~D~Tg-s~~~~~Fd~~ae~llG~sA~el~~~~~e~~d~~~~~~~l~~~~~k~~~fkvkvk~e~y~~e~r~k~~v~ 536 (560)
+.+.|.|.|| ++.+.+|.+..+. .. +. ..+ ..+. .++|..+...|++. ..+.+.
T Consensus 90 ~~~~L~D~TG~~I~~k~W~~~~~~-----~~--------~~--~~~------~~G~--yVrV~G~v~~f~g~--~qi~i~ 144 (270)
T 2pi2_A 90 IVYKIDDMTAAPMDVRQWVDTDDT-----SS--------EN--TVV------PPET--YVKVAGHLRSFQNK--KSLVAF 144 (270)
T ss_dssp EEEEEECSSSSCEEEEEECC--------------------C--CCC------CTTC--EEEEEEEEEEETTE--EEEEEE
T ss_pred EEEEEECCCCCEEEEEEEcCcCcc-----cc--------hh--hcC------CCCC--EEEEEEEEEecCCe--eEEEEE
Confidence 4788999999 8999999864220 00 00 000 0122 45777777789874 556677
Q ss_pred EeeeCC-hHHHHHHHHHHHHhh
Q 008606 537 RADQVN-YSSESRYLLDLISKS 557 (560)
Q Consensus 537 ~~~~vd-~~~e~~~ll~~i~~~ 557 (560)
++.|++ +.+..-.+|+.|...
T Consensus 145 ~ir~v~d~nEi~~H~Le~i~~h 166 (270)
T 2pi2_A 145 KIMPLEDMNEFTTHILEVINAH 166 (270)
T ss_dssp EEEECSCTHHHHHHHHHHHHHH
T ss_pred EEEecCCHhHHHHHHHHHHHHH
Confidence 777774 778888899988654
No 67
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae}
Probab=77.93 E-value=3.7 Score=38.52 Aligned_cols=65 Identities=18% Similarity=0.292 Sum_probs=50.1
Q ss_pred CCceEEEEEEEEecccceeccCCCCCcEEEEEEE------eCC-------CCeEEEEEcch-hHHHHHhhcccCcEEEEe
Q 008606 125 QGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL------DSD-------GGEIRVTCFNA-VVDRFYEIIEVGRVYLIS 190 (560)
Q Consensus 125 ~~~w~Ik~RV~~k~~ir~~~n~~g~gkvf~~~L~------D~~-------g~~I~at~~~~-~~~kf~~~l~eG~vY~Is 190 (560)
+++..|.+||++--++|...+ | ..+.+|.|. |.+ ..-|++++|+. +++.....|+.|+.+.|.
T Consensus 26 mNkV~LiGrLg~DPElR~t~~--G-~~Va~FsLAvnr~~kd~~~Ge~~e~Tdwi~Vvawgk~lAe~~~~yL~KGs~V~Ve 102 (193)
T 3pgz_A 26 LNKVILIGNLGADPEIRRLNS--G-DQVANLRIATSESWRDRNTNERKERTEWHNIVIFNENLVKVVEQYLKKGSKIYIE 102 (193)
T ss_dssp EEEEEEEEEESSCCEEEECTT--S-CEEEEEEEEEEEEECCC-----EEEEEEEEEEECCHHHHHHHHHHCCTTCEEEEE
T ss_pred cCEEEEEEEECCCCeEEECCC--C-CEEEEEEEEEcCceeccCCCceeeeeEEEEEEEECHHHHHHHHhhcCCCCEEEEE
Confidence 567899999999999887643 2 257777765 222 23489999996 888888899999999998
Q ss_pred ee
Q 008606 191 KG 192 (560)
Q Consensus 191 ~~ 192 (560)
+-
T Consensus 103 Gr 104 (193)
T 3pgz_A 103 GQ 104 (193)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 68
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=77.52 E-value=3.3 Score=38.00 Aligned_cols=65 Identities=12% Similarity=0.181 Sum_probs=51.0
Q ss_pred CCceEEEEEEEEecccceeccCCCCCcEEEEEEE------eC-------CCCeEEEEEcch-hHHHHHhhcccCcEEEEe
Q 008606 125 QGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL------DS-------DGGEIRVTCFNA-VVDRFYEIIEVGRVYLIS 190 (560)
Q Consensus 125 ~~~w~Ik~RV~~k~~ir~~~n~~g~gkvf~~~L~------D~-------~g~~I~at~~~~-~~~kf~~~l~eG~vY~Is 190 (560)
+++..|.|||.+--++|...+ | ..+.+|.|. |. +..-|++++|+. +++.....|+.|+.+.|.
T Consensus 23 mNkV~LiGrL~~DPelr~t~~--G-~~v~~FslAv~~~~~~~~~Ge~~~~t~~i~vv~wg~~lAe~~~~~l~KG~~V~Ve 99 (169)
T 3lgj_A 23 LNKVMLIGYLGDDPESKTMTS--G-AEVVNFRMATFESYMNKNTHQKVEKTEWHSVVVFNPHFAKIALQYLHKGSKVYIE 99 (169)
T ss_dssp EEEEEEEEEESSCCEEEECTT--S-CEEEEEEEEEEC------------CEEEEEEEECCHHHHHHHHHHCCTTCEEEEE
T ss_pred eeEEEEEEEECCCCeEEECCC--C-CEEEEEEEEEcCceecccCCccccccEEEEEEEeCHHHHHHHHHhCCCCCEEEEE
Confidence 467899999999988887643 3 257777664 22 234689999999 999999999999999998
Q ss_pred ee
Q 008606 191 KG 192 (560)
Q Consensus 191 ~~ 192 (560)
+-
T Consensus 100 Gr 101 (169)
T 3lgj_A 100 GK 101 (169)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 69
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3
Probab=76.36 E-value=1.5 Score=40.70 Aligned_cols=66 Identities=21% Similarity=0.265 Sum_probs=51.1
Q ss_pred CCceEEEEEEEEecccceeccCCCCCcEEEEEEE------eCC-C------CeEEEEEcchhHHHHHhhcccCcEEEEee
Q 008606 125 QGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL------DSD-G------GEIRVTCFNAVVDRFYEIIEVGRVYLISK 191 (560)
Q Consensus 125 ~~~w~Ik~RV~~k~~ir~~~n~~g~gkvf~~~L~------D~~-g------~~I~at~~~~~~~kf~~~l~eG~vY~Is~ 191 (560)
+.+..|.+||++.-++|...+ | ..+.+|.|. |.+ | .-|++++|+.+++.....|+.|+.+.|.+
T Consensus 6 ~N~V~LiGrL~~dPelr~t~~--G-~~v~~f~LAv~~~~~d~~~Ge~~~~t~~i~vv~wg~~Ae~~~~~l~KG~~V~VeG 82 (178)
T 1eqq_A 6 VNKVILVGNLGQDPEVRYMPN--G-GAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEG 82 (178)
T ss_dssp EEEEEEEEEESSSCCCCEETT--T-EECCCCEEEEEECCCCSSSSSCCCEEEEEEEEECHHHHHHHHHHCCTTCEEEECC
T ss_pred eeEEEEEEEECCCCEEEECCC--C-CEEEEEEEEEcCCeecCCCCceecccEEEEEEEccHHHHHHHHhcCCCCEEEEEE
Confidence 467899999999999987653 2 245566553 322 2 36899999999999999999999999987
Q ss_pred eE
Q 008606 192 GS 193 (560)
Q Consensus 192 ~~ 193 (560)
..
T Consensus 83 rL 84 (178)
T 1eqq_A 83 QL 84 (178)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 70
>3k7u_C MP18 RNA editing complex protein; OB-fold, RNA-editing proteins, kinetoplastids, system, RNA binding protein; 2.10A {Trypanosoma brucei} PDB: 3k80_D 3stb_D
Probab=75.78 E-value=11 Score=33.60 Aligned_cols=63 Identities=13% Similarity=0.164 Sum_probs=49.1
Q ss_pred CCCceEEEEEEEEecccceeccCCCCCcEEEEEEE------eC-------CCCeEEEEEcchh-HHHHHhhcccCcEEEE
Q 008606 124 YQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL------DS-------DGGEIRVTCFNAV-VDRFYEIIEVGRVYLI 189 (560)
Q Consensus 124 ~~~~w~Ik~RV~~k~~ir~~~n~~g~gkvf~~~L~------D~-------~g~~I~at~~~~~-~~kf~~~l~eG~vY~I 189 (560)
.+++..|.+||.+--+ |.. + | ..+.+|.|. |. +.+-|++++|+.. ++.....|+.|+-+.|
T Consensus 5 ~~NkV~LiGrLg~DPe-r~t-~--G-~~va~FslAv~~~~~~~~Ge~~~~~t~w~~vv~wgk~lAe~~~~yl~KG~~V~V 79 (148)
T 3k7u_C 5 SVNSVTLVGVVHDIQS-GFV-Y--E-DAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAEVKQKVKEGNVVCV 79 (148)
T ss_dssp CCCCEEEEEEEEEEEE-EES-S--S-SEEEEEEEEEECC-----------CEEEEEEEEESHHHHHHHHHHCCTTCEEEE
T ss_pred cCcEEEEEEEeccCCE-eee-C--C-cEEEEEEEEECCceecCCCCEEccccEEEEEEEECcHHHHHHHhhCCCCCEEEE
Confidence 3578899999999887 654 3 2 367777764 21 3357999999997 9999999999999999
Q ss_pred ee
Q 008606 190 SK 191 (560)
Q Consensus 190 s~ 191 (560)
.+
T Consensus 80 eG 81 (148)
T 3k7u_C 80 NG 81 (148)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 71
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=73.50 E-value=5.4 Score=40.02 Aligned_cols=66 Identities=20% Similarity=0.272 Sum_probs=51.8
Q ss_pred CCCceEEEEEEEEecccceeccCCCCCcEEEEEEE------eCCC------CeEEEEEcchhHHHHHhhcccCcEEEEee
Q 008606 124 YQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL------DSDG------GEIRVTCFNAVVDRFYEIIEVGRVYLISK 191 (560)
Q Consensus 124 ~~~~w~Ik~RV~~k~~ir~~~n~~g~gkvf~~~L~------D~~g------~~I~at~~~~~~~kf~~~l~eG~vY~Is~ 191 (560)
.++...|.+||.+--++|...+ | ..+.+|.|. |++| .-|++++|+.+++.... |+.|+.+.|.+
T Consensus 128 mmN~V~L~GrL~~dPelr~t~~--G-~~v~~f~lAv~~~~~d~~Ge~~~~t~~i~vvawg~~Ae~~~~-l~KG~~V~V~G 203 (301)
T 1se8_A 128 AMNEVLVLGNVTRDPEIRYTPA--G-DAVLSLSIAVNENYQDRQGQRQEKVHYIDATLWRDLAENMKE-LRKGDPVMIMG 203 (301)
T ss_dssp CEEEEEEEEEECSCCEEEECTT--C-CEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHHHHTT-CCTTCEEEEEE
T ss_pred ceeEEEEEEEECcCCEEEECCC--C-CEEEEEEEEEcCceEcCCCCcccccEEEEEEECCHHHHHHHh-cCCCCEEEEEE
Confidence 4567889999999888887643 3 257777764 4334 35999999999999999 99999999997
Q ss_pred eE
Q 008606 192 GS 193 (560)
Q Consensus 192 ~~ 193 (560)
..
T Consensus 204 rL 205 (301)
T 1se8_A 204 RL 205 (301)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 72
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A
Probab=72.70 E-value=4.7 Score=35.19 Aligned_cols=67 Identities=21% Similarity=0.240 Sum_probs=50.1
Q ss_pred CCCceEEEEEEEEecccceeccCCCCCcEEEEEEE------e------CCC------CeEEEEEcch-hHHHHHhhcccC
Q 008606 124 YQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL------D------SDG------GEIRVTCFNA-VVDRFYEIIEVG 184 (560)
Q Consensus 124 ~~~~w~Ik~RV~~k~~ir~~~n~~g~gkvf~~~L~------D------~~g------~~I~at~~~~-~~~kf~~~l~eG 184 (560)
.+++..|.|||.+--++|...+ | ..+.+|.|. | ++| .-+++++|++ +|+.....|+.|
T Consensus 13 ~mN~V~L~GrL~~dPelr~t~~--G-~~v~~f~lA~~~~~~~~~g~~~~~g~~~~~t~w~~v~~wg~~~Ae~~~~~l~KG 89 (132)
T 3ull_A 13 SLNRVHLLGRVGQDPVLRQVEG--K-NPVTIFSLATNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKG 89 (132)
T ss_dssp CEEEEEEEEEECSCCEEECCTT--S-CCEEEEEEEEEEEECC---------CCEEEEEEEEEEECSTTHHHHHHHHCCTT
T ss_pred cCcEEEEEEEECCCCEEEECCC--C-CEEEEEEEEEecceeccccccccCCceecceEEEEEEEEchHHHHHHHhhCCCC
Confidence 4678999999999988887643 3 257677654 2 122 3578899994 999999999999
Q ss_pred cEEEEeeeE
Q 008606 185 RVYLISKGS 193 (560)
Q Consensus 185 ~vY~Is~~~ 193 (560)
+.+.|.+-.
T Consensus 90 ~~V~V~G~L 98 (132)
T 3ull_A 90 SRIYLEGKI 98 (132)
T ss_dssp CEEEEEEEE
T ss_pred CEEEEEEEE
Confidence 999998653
No 73
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=71.40 E-value=8.8 Score=44.89 Aligned_cols=73 Identities=11% Similarity=0.170 Sum_probs=57.4
Q ss_pred cceeccccCCCCCceEEEEEEEEecccceeccCCCCCcEEEEEEEeCCCCeEEEEEcch--hHHHHHhhcccCcEEEEee
Q 008606 114 RIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNA--VVDRFYEIIEVGRVYLISK 191 (560)
Q Consensus 114 ~~~pI~~L~p~~~~w~Ik~RV~~k~~ir~~~n~~g~gkvf~~~L~D~~g~~I~at~~~~--~~~kf~~~l~eG~vY~Is~ 191 (560)
.++||++|.....+..|.|.|... +.|..++ | ..++.|.+.| ..+.|.+..|.. ....+.+.|++|.|+.+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~g~v~~~-~~~~~~~--~-~~~~~~~~td-~~~~~~~k~f~~~~~~~~~~~~~~~g~~~~~~g 80 (1041)
T 3f2b_A 6 PVRRLETIVEEERRVVVQGYVFDA-EVSELKS--G-RTLLTMKITD-YTNSILVKMFSRDKEDAELMSGVKKGMWVKVRG 80 (1041)
T ss_dssp -CBCGGGCCSCEEEEEEEEEEEEE-EEEECTT--S-CEEEEEEEEC-SSCEEEEEEECSSHHHHHHHHTCCTTCEEEEEE
T ss_pred CcccHHHhhcccceEEEEEEEEEE-EEEEccC--C-CEEEEEEEEe-CCCCEEEEEeecccchHHHHhcCCCCCEEEEEE
Confidence 578999999999999999998864 5566543 2 3689999999 688899988854 3345667899999998865
No 74
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=71.06 E-value=23 Score=38.87 Aligned_cols=95 Identities=15% Similarity=0.146 Sum_probs=64.1
Q ss_pred eccccCCC--CCceEEEEEEEEecccceeccCCCCCcEEEEEEEeCCCCeEEEEEcchhHH--HHHhhcccCcEEEEeee
Q 008606 117 PIAALNPY--QGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVD--RFYEIIEVGRVYLISKG 192 (560)
Q Consensus 117 pI~~L~p~--~~~w~Ik~RV~~k~~ir~~~n~~g~gkvf~~~L~D~~g~~I~at~~~~~~~--kf~~~l~eG~vY~Is~~ 192 (560)
.+.+|+.. ....+|+|||.++ |. .|++.=++|.| .++.|++++-.+..+ +....|..|+++.+.+.
T Consensus 5 ~~~~l~~~~~g~~V~l~GwV~~~---R~------~G~~~Fi~LrD-~~g~iQvv~~~~~~~~~~~~~~l~~e~~V~V~G~ 74 (585)
T 1c0a_A 5 YCGQLRLSHVGQQVTLCGWVNRR---RD------LGSLIFIDMRD-REGIVQVFFDPDRADALKLASELRNEFCIQVTGT 74 (585)
T ss_dssp CGGGCCGGGTTCEEEEEEEEEEE---EE------CSSCEEEEEEE-TTEEEEEEECGGGHHHHHHHTTCCTTCEEEEEEE
T ss_pred EHHHHHHHhCCCEEEEEEEEEEE---ec------CCCcEEEEEEE-CCeeEEEEEeCCchHHHHHHhcCCCCCEEEEEeE
Confidence 34555433 3468999999874 43 24666678999 566899999654322 23357999999999987
Q ss_pred EEecCCCcccc--CCCeeEEEEcccceEEec
Q 008606 193 SLKPAQKNFNH--LKNEWEIFLEATSTVDLC 221 (560)
Q Consensus 193 ~V~~a~~~y~~--~~~~yeI~f~~~T~I~~~ 221 (560)
-++...+.-++ ....+||..++-..+..+
T Consensus 75 v~~~~~~~~n~~~~~geiEl~~~~i~vl~~a 105 (585)
T 1c0a_A 75 VRARDEKNINRDMATGEIEVLASSLTIINRA 105 (585)
T ss_dssp EEECCTTTCCTTSTTTTEEEEEEEEEEEECC
T ss_pred EEccCcccccccCCCccEEEEEeEEEEEecc
Confidence 66543332232 346799999877776665
No 75
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=70.28 E-value=16 Score=38.46 Aligned_cols=91 Identities=14% Similarity=-0.011 Sum_probs=61.7
Q ss_pred eeccccCCC--CCceEEEEEEEEecccceeccCCCCCcEEEEEEEeCCCCeEEEEEcchh-HHHHHhhcccCcEEEEeee
Q 008606 116 IPIAALNPY--QGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAV-VDRFYEIIEVGRVYLISKG 192 (560)
Q Consensus 116 ~pI~~L~p~--~~~w~Ik~RV~~k~~ir~~~n~~g~gkvf~~~L~D~~g~~I~at~~~~~-~~kf~~~l~eG~vY~Is~~ 192 (560)
+.+.+|... ....+|.|||.++ |.. |++.=++|.| .++.|++.+..+. .-+....|..|+++.+.+.
T Consensus 5 ~~~~~l~~~~~~~~V~v~Gwv~~~---R~~------g~~~F~~lrD-~~g~iQ~v~~~~~~~~~~~~~l~~~~~v~v~G~ 74 (429)
T 1wyd_A 5 HFIADVTPEYDGKEVIWAGWVHLL---RDL------GGKKFIILRD-KTGLGQVVVDKNSSAFGISQELTQESVIQVRGI 74 (429)
T ss_dssp SCTTTCCGGGTTCEEEEEEEEEEE---EEE------TTEEEEEEEE-TTEEEEEEECTTSTTHHHHTTCCTTCEEEEEEE
T ss_pred EEHHHhhHHhCCCEEEEEEEEEEE---ecC------CCeEEEEEEE-CCeeEEEEEeCChHHHHHHHhCCCCCEEEEEEE
Confidence 345666532 3568999999874 432 4666677999 5678999996542 1122367999999999987
Q ss_pred EEecCCCccccCCCeeEEEEcccceEEec
Q 008606 193 SLKPAQKNFNHLKNEWEIFLEATSTVDLC 221 (560)
Q Consensus 193 ~V~~a~~~y~~~~~~yeI~f~~~T~I~~~ 221 (560)
-++... ....+||..++-..+..+
T Consensus 75 v~~~~~-----~~~~~el~~~~~~vl~~~ 98 (429)
T 1wyd_A 75 VKADKR-----APRGIELHAEEITLLSKA 98 (429)
T ss_dssp EEECSS-----SGGGEEEEEEEEEEEECC
T ss_pred EEecCC-----CCccEEEEEeEEEEeccC
Confidence 655432 135799999876666665
No 76
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=69.95 E-value=22 Score=37.46 Aligned_cols=92 Identities=12% Similarity=0.062 Sum_probs=62.9
Q ss_pred ceeccccCCC--CCceEEEEEEEEecccceeccCCCCCcEEEEEEEeCCCCeEEEEEcchhH----HHHHhhcccCcEEE
Q 008606 115 IIPIAALNPY--QGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV----DRFYEIIEVGRVYL 188 (560)
Q Consensus 115 ~~pI~~L~p~--~~~w~Ik~RV~~k~~ir~~~n~~g~gkvf~~~L~D~~g~~I~at~~~~~~----~kf~~~l~eG~vY~ 188 (560)
-+.+.+|+.. ....+|.|||.++ |.. |++.=++|.|. ++.|++.+-.+.+ -+....|..|+++.
T Consensus 4 t~~~~~l~~~~~g~~V~v~Gwv~~~---R~~------g~~~Fi~LrD~-~g~iQ~v~~~~~~~~~~~~~~~~l~~~~~V~ 73 (438)
T 3nem_A 4 THYSSEITEELNGQKVKVAGWVWEV---KDL------GGIKFLWIRDR-DGIVQITAPKKKVDPELFKLIPKLRSEDVVA 73 (438)
T ss_dssp SCCGGGCCGGGTTCEEEEEEEEEEE---EEE------TTEEEEEEEET-TEEEEEEEETTTSCHHHHHHGGGCCTTCEEE
T ss_pred EEEHHHcchhcCCCEEEEEEEEEEE---ecC------CCeEEEEEEEC-CeeEEEEEeCCcCCHHHHHHHhcCCCCCEEE
Confidence 3456777654 3578999999875 432 46666789994 5689999976532 23345699999999
Q ss_pred EeeeEEecCCCccccCCCeeEEEEcccceEEec
Q 008606 189 ISKGSLKPAQKNFNHLKNEWEIFLEATSTVDLC 221 (560)
Q Consensus 189 Is~~~V~~a~~~y~~~~~~yeI~f~~~T~I~~~ 221 (560)
+.+.-++... ....+||..++-..+..+
T Consensus 74 V~G~v~~~~~-----~~~~~el~~~~i~vl~~~ 101 (438)
T 3nem_A 74 VEGVVNFTPK-----AKLGFEILPEKIVVLNRA 101 (438)
T ss_dssp EEEEEEECTT-----STTSEEEEEEEEEEEECB
T ss_pred EEEEEEeCCC-----CCCcEEEEEEEEEEEecC
Confidence 9876554322 235799998876666665
No 77
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=69.89 E-value=29 Score=29.17 Aligned_cols=74 Identities=5% Similarity=0.107 Sum_probs=41.0
Q ss_pred CceeEEEEEEEEecCceeEeeccC-ceeeEEEEEEec----CCCcEEEEEEeCcchhhhhhhHHhhhccCCccEEEEE-E
Q 008606 247 NSIVDVIGIVISVNPSVPILRKNG-METQRRILNLKD----TSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVK-S 320 (560)
Q Consensus 247 ~~~VDVIGvV~~V~~~~~i~~k~G-~~~~kr~i~L~D----~Sg~~I~vtLWg~~a~~~~~~l~~~~~~~~~~VV~l~-~ 320 (560)
...|-++|.|..=-+++. +.+| ..+.+-.|-+-. +.-.-+.|++||+.|+...++| ..+.-|.|. .
T Consensus 11 ~~~v~LiGrL~~DPelR~--t~~g~~~va~f~lAv~~~~~~~~t~fi~vv~wgk~AE~~~~yl------~KG~~V~VeGr 82 (108)
T 3koj_A 11 MNSCILQATVVEAPQLRY--AQDNQTPVAEMVVQFPGLSSKDAPARLKVVGWGAVAQELQDRC------RLNDEVVLEGR 82 (108)
T ss_dssp CEEEEEEEEEEEEEEEEE--CTTSSSEEEEEEEEECC-----CCEEEEEEEETHHHHHHHHHC------CTTCEEEEEEE
T ss_pred cceEEEEEEECCCCEEEE--eCCCCEEEEEEEEEECCcccCCCcEEEEEEEEhHHHHHHHHhC------CCCCEEEEEEE
Confidence 356888999887544433 3345 444333333221 1112599999999998765543 345666554 4
Q ss_pred EEEecCCC
Q 008606 321 GKVNDFSG 328 (560)
Q Consensus 321 ~rV~~f~G 328 (560)
.+...|..
T Consensus 83 L~~r~y~~ 90 (108)
T 3koj_A 83 LRINSLLK 90 (108)
T ss_dssp EEEEC---
T ss_pred EEeeeEEC
Confidence 46666754
No 78
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=69.12 E-value=19 Score=37.90 Aligned_cols=91 Identities=12% Similarity=0.089 Sum_probs=62.0
Q ss_pred eeccccCCC--CCceEEEEEEEEecccceeccCCCCCcEEEEEEEeCCCCeEEEEEcchhH----HHHHhhcccCcEEEE
Q 008606 116 IPIAALNPY--QGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV----DRFYEIIEVGRVYLI 189 (560)
Q Consensus 116 ~pI~~L~p~--~~~w~Ik~RV~~k~~ir~~~n~~g~gkvf~~~L~D~~g~~I~at~~~~~~----~kf~~~l~eG~vY~I 189 (560)
+.+.+|... ....+|.|||.++ |.. |++.=++|.| .++.|++++..+.+ -+....|..|+++.+
T Consensus 5 ~~~~~l~~~~~~~~V~v~G~v~~~---R~~------g~~~F~~lrD-~~g~iQ~v~~~~~~~~~~~~~~~~l~~~~~v~v 74 (434)
T 1x54_A 5 VYCQEVKPELDGKKVRLAGWVYTN---MRV------GKKIFLWIRD-STGIVQAVVAKNVVGEETFEKAKKLGRESSVIV 74 (434)
T ss_dssp CCGGGCCGGGTTCEEEEEEEEEEE---EEE------TTEEEEEEEE-TTEEEEEEECHHHHCHHHHHHHHTCCTTCEEEE
T ss_pred EEHHHhhHHhCCCEEEEEEEEEEE---ecC------CCeEEEEEEE-CCEEEEEEEECCcCCHHHHHHHhcCCCCCEEEE
Confidence 346666543 3568999999875 432 4666677999 56689999965432 122357999999999
Q ss_pred eeeEEecCCCccccCCCeeEEEEcccceEEec
Q 008606 190 SKGSLKPAQKNFNHLKNEWEIFLEATSTVDLC 221 (560)
Q Consensus 190 s~~~V~~a~~~y~~~~~~yeI~f~~~T~I~~~ 221 (560)
.+.-++.... ...+||..++-..+..+
T Consensus 75 ~G~v~~~~~~-----~~~~el~~~~~~vl~~~ 101 (434)
T 1x54_A 75 EGIVKADERA-----PGGAEVHVEKLEVIQAV 101 (434)
T ss_dssp EEEEEECTTS-----GGGEEEEEEEEEEEECC
T ss_pred EEEEEecCCC-----CccEEEEEeEEEEeecC
Confidence 9876554321 35799998876666655
No 79
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=67.72 E-value=22 Score=38.38 Aligned_cols=79 Identities=20% Similarity=0.277 Sum_probs=56.6
Q ss_pred CceEEEEEEEEecccceeccCCCCC-cEEEEEEEeCCCCeEEEEEcchhH------HHHHhhcccCcEEEEeeeEEecCC
Q 008606 126 GRWAIKARVTAKGDLRRYNNARGDG-KVFSFDLLDSDGGEIRVTCFNAVV------DRFYEIIEVGRVYLISKGSLKPAQ 198 (560)
Q Consensus 126 ~~w~Ik~RV~~k~~ir~~~n~~g~g-kvf~~~L~D~~g~~I~at~~~~~~------~kf~~~l~eG~vY~Is~~~V~~a~ 198 (560)
...+|.|||.++ |. .| ++.=++|.| .++.|++.+..+.+ +++...|..|+++.+.+.-++..
T Consensus 56 ~~V~v~Grv~~~---R~------~gkk~~F~~LrD-~sg~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t~- 124 (521)
T 3bju_A 56 ITLKVAGRIHAK---RA------SGGKLIFYDLRG-EGVKLQVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTK- 124 (521)
T ss_dssp CCEEEEEEEEEE---EE------SSSSEEEEEEEE-TTEEEEEEEEGGGSSCHHHHHHHHHHCCTTCEEEEEEEEEECT-
T ss_pred cEEEEEEEEEEE---ec------CCCCcEEEEEEE-CCEEEEEEEECCccCCHHHHHHHHhcCCCCCEEEEEEEEEecC-
Confidence 468999999874 33 34 555567999 56799999976433 33445699999999998765542
Q ss_pred CccccCCCeeEEEEcccceEEec
Q 008606 199 KNFNHLKNEWEIFLEATSTVDLC 221 (560)
Q Consensus 199 ~~y~~~~~~yeI~f~~~T~I~~~ 221 (560)
...++|..++-..+..|
T Consensus 125 ------~ge~ei~~~~i~~l~~~ 141 (521)
T 3bju_A 125 ------KGELSIIPYEITLLSPC 141 (521)
T ss_dssp ------TCCEEEEEEEEEEEECC
T ss_pred ------CCCEEEEEeEEEEeecC
Confidence 24789988876666655
No 80
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=66.96 E-value=26 Score=38.32 Aligned_cols=96 Identities=16% Similarity=0.059 Sum_probs=63.2
Q ss_pred eeccccCCC--CCceEEEEEEEEecccceeccCCCCCcEEEEEEEeCCCCeEEEEEcchh-HHHHHhhcccCcEEEEeee
Q 008606 116 IPIAALNPY--QGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAV-VDRFYEIIEVGRVYLISKG 192 (560)
Q Consensus 116 ~pI~~L~p~--~~~w~Ik~RV~~k~~ir~~~n~~g~gkvf~~~L~D~~g~~I~at~~~~~-~~kf~~~l~eG~vY~Is~~ 192 (560)
+.+.+|+.. ....+|+|||.++ |. .|++.=++|.| .++.|++++-.+. .-+....|..|+++.+.+.
T Consensus 5 ~~~~~l~~~~~g~~V~l~GwV~~~---R~------~G~~~Fi~LrD-~~g~iQvv~~~~~~~~~~~~~l~~e~~V~V~G~ 74 (580)
T 1l0w_A 5 HYAGSLRETHVGEEVVLEGWVNRR---RD------LGGLIFLDLRD-REGLVQLVAHPASPAYATAERVRPEWVVRAKGL 74 (580)
T ss_dssp SCGGGCCGGGTTCEEEEEEEEEEE---EE------CSSCEEEEEEE-TTEEEEEEECTTSTTHHHHTTCCTTCEEEEEEE
T ss_pred EEHHHhHHHhCCCEEEEEEEEEEE---ec------CCCeEEEEEEE-CCeeEEEEEeCChhHHHHHhcCCCCcEEEEEEE
Confidence 345566533 3468999999874 43 24666678999 5668999996542 1123456999999999987
Q ss_pred EEecCCCccccCCCeeEEEEcccceEEec
Q 008606 193 SLKPAQKNFNHLKNEWEIFLEATSTVDLC 221 (560)
Q Consensus 193 ~V~~a~~~y~~~~~~yeI~f~~~T~I~~~ 221 (560)
-++.....-+.....+||..++-..+..+
T Consensus 75 v~~~~~~~~~~~~ge~Ei~~~~i~vl~~a 103 (580)
T 1l0w_A 75 VRLRPEPNPRLATGRVEVELSALEVLAEA 103 (580)
T ss_dssp EEECSSCCTTSTTTTEEEEEEEEEEEECC
T ss_pred EEcCCCcCccCCCccEEEEEeEEEEeccC
Confidence 65543211122346799999877666665
No 81
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=66.19 E-value=26 Score=36.70 Aligned_cols=83 Identities=11% Similarity=0.056 Sum_probs=58.6
Q ss_pred eccccCCC-CCceEEEEEEEEecccceeccCCCCCcEEEEEEEeCCCCeEEEEEcchhHHHHHhhcc-cCcEEEEeeeEE
Q 008606 117 PIAALNPY-QGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIE-VGRVYLISKGSL 194 (560)
Q Consensus 117 pI~~L~p~-~~~w~Ik~RV~~k~~ir~~~n~~g~gkvf~~~L~D~~g~~I~at~~~~~~~kf~~~l~-eG~vY~Is~~~V 194 (560)
.+.+|... ....+|+|||.++ |. .|++.=++|.| .++.|++++-. ..|. .|+++.+.+.-+
T Consensus 4 ~~~~l~~~~~~~V~v~Gwv~~~---R~------~g~~~F~~lrD-~~g~iQ~v~~~-------~~l~~~~~~v~v~G~v~ 66 (422)
T 1n9w_A 4 LVRDLKAHVGQEVELLGFLHWR---RD------LGRIQFLLLRD-RSGVVQVVTGG-------LKLPLPESALRVRGLVV 66 (422)
T ss_dssp CGGGGGGCTTSEEEEEEEEEEE---EE------CSSEEEEEEEE-TTEEEEEEEES-------CCCCCTTCEEEEEEEEE
T ss_pred EHHHHHhcCCCEEEEEEEEEEE---ec------CCCeEEEEEEE-CCEEEEEEEEc-------cccCCCCCEEEEEEEEE
Confidence 45566522 3568999999874 43 34666677999 56689999864 5789 999999998765
Q ss_pred ecCCCccccCCCeeEEEEcccceEEec
Q 008606 195 KPAQKNFNHLKNEWEIFLEATSTVDLC 221 (560)
Q Consensus 195 ~~a~~~y~~~~~~yeI~f~~~T~I~~~ 221 (560)
+... ....+||..++-..+..+
T Consensus 67 ~~~~-----~~~~~el~~~~~~vl~~~ 88 (422)
T 1n9w_A 67 ENAK-----APGGLEVQAKEVEVLSPA 88 (422)
T ss_dssp ECTT-----STTSEEEEEEEEEEEECC
T ss_pred ecCC-----CCccEEEEEeEEEEeccC
Confidence 5432 135799998876666655
No 82
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=64.40 E-value=23 Score=37.20 Aligned_cols=93 Identities=17% Similarity=0.167 Sum_probs=59.3
Q ss_pred eccccCCCC-CceEEEEEEEEecccceeccCCCCCcEEEEEEEeCCCCeEEEEEcchhHHHHH-hhcccCcEEEEeeeEE
Q 008606 117 PIAALNPYQ-GRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFY-EIIEVGRVYLISKGSL 194 (560)
Q Consensus 117 pI~~L~p~~-~~w~Ik~RV~~k~~ir~~~n~~g~gkvf~~~L~D~~g~~I~at~~~~~~~kf~-~~l~eG~vY~Is~~~V 194 (560)
.|++|.... ...+|.|||.++ |.. | +++.=++|.| .++.|++.+-.+..+.|. ..|..|+++.+.+.-+
T Consensus 2 ~i~~~~~~~~~~V~v~Gwv~~~---R~~----G-k~~~Fi~LrD-~~g~iQvv~~~~~~~~~~~~~l~~~~~v~v~G~v~ 72 (435)
T 2xgt_A 2 KIRDLVKHRNERVCIKGWIHRM---RRQ----G-KSLMFFILRD-GTGFLQVLLMDKLCQTYDALTVNTECTVEIYGAIK 72 (435)
T ss_dssp CGGGGGGGTTSEEEEEEEEEEE---EEC----T-TSEEEEEEEC-SSCEEEEEEEGGGGSSHHHHHCCTTCEEEEEEEEE
T ss_pred chhhhhhcCCCEEEEEEEEEEe---ccc----C-CCcEEEEEEE-CCceEEEEECCcchhHHHHhcCCCCCEEEEEEEEE
Confidence 467776544 468999999874 432 2 2455677999 566899999754322221 1589999999998765
Q ss_pred ecCCCccccCCCeeEEEEcccceEEe
Q 008606 195 KPAQKNFNHLKNEWEIFLEATSTVDL 220 (560)
Q Consensus 195 ~~a~~~y~~~~~~yeI~f~~~T~I~~ 220 (560)
+...+. .....+||..+.-..+..
T Consensus 73 ~~~~~~--~~~g~~El~~~~~~vl~~ 96 (435)
T 2xgt_A 73 EVPEGK--EAPNGHELIADFWKIIGN 96 (435)
T ss_dssp ECC--------TTEEEEEEEEEEEEC
T ss_pred ecCCCc--CCCCcEEEEEEEEEEeec
Confidence 533221 234679999877666654
No 83
>2xvs_A Tetratricopeptide repeat protein 5; antitumor protein, P53 cofactor, stress-response; 1.80A {Homo sapiens}
Probab=62.85 E-value=15 Score=33.45 Aligned_cols=76 Identities=25% Similarity=0.368 Sum_probs=57.1
Q ss_pred CCcceeccccCCCCC-ceEEEEEEEEecccceeccCCCCCcEEEEEEEeCCCCeEEEEEcchhHHHHHhhcccCcEEEEe
Q 008606 112 PARIIPIAALNPYQG-RWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLIS 190 (560)
Q Consensus 112 ~~~~~pI~~L~p~~~-~w~Ik~RV~~k~~ir~~~n~~g~gkvf~~~L~D~~g~~I~at~~~~~~~kf~~~l~eG~vY~Is 190 (560)
.....+|++|.++.+ .-.|.+||+.- + . ..+.--|.|.++|++|.-.-+++++-.-+ + -+.+|+.+.|-
T Consensus 60 ~l~~~~l~~L~~G~N~g~vv~gKVv~~--i---~--~e~~vP~~f~~vD~~g~c~avsVYNl~~~-~--G~~iGDsV~Ip 129 (166)
T 2xvs_A 60 TLELKPLSTLQPGVNSGAVILGKVVFS--L---T--TEEKVPFTFGLVDSDGPCYAVMVYNIVQS-W--GVLIGDSVAIP 129 (166)
T ss_dssp CCEECCGGGCCSEECTTEEEEEEEEEE--E---C--CTTCCSEEEEEESSSSCCEEEEECCCCSS-C--CCCTTCEEEEE
T ss_pred eeeeeeHHHcccccCCCcEEEEEEEEE--e---c--CCCCCceEEEEECCCCCEEEEEEEeccCC-c--ceEecCEEEeC
Confidence 567889999999974 67899999863 1 1 12335699999999999999999985321 1 17789999997
Q ss_pred eeEEecC
Q 008606 191 KGSLKPA 197 (560)
Q Consensus 191 ~~~V~~a 197 (560)
...++..
T Consensus 130 eP~v~~v 136 (166)
T 2xvs_A 130 EPNLRLH 136 (166)
T ss_dssp SCEEEEE
T ss_pred CCcEEEE
Confidence 7666533
No 84
>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A*
Probab=61.90 E-value=7.7 Score=34.57 Aligned_cols=87 Identities=20% Similarity=0.175 Sum_probs=59.3
Q ss_pred cceeccccCCCCCceEEEEEEEEecccceeccCCCCCcEEEEEEEeC-------------C--------C-CeEEEEEcc
Q 008606 114 RIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDS-------------D--------G-GEIRVTCFN 171 (560)
Q Consensus 114 ~~~pI~~L~p~~~~w~Ik~RV~~k~~ir~~~n~~g~gkvf~~~L~D~-------------~--------g-~~I~at~~~ 171 (560)
++.-|+++.+++ -.-+.|-|++.+ .. + ..+.+-+.|- + | =.|++++|.
T Consensus 4 kf~llkdv~~~~-F~Dl~~qVv~~~-----~~--~--~~~~LyVTDYT~N~~~~~~~~~~~~~~W~Gp~G~~tlqVtlwd 73 (143)
T 4hik_A 4 SFSLLSQITPHQ-RCSFYAQVIKTW-----YS--D--KNFTLYVTDYTENELFFPMSPYTSSSRWRGPFGRFSIRCILWD 73 (143)
T ss_dssp CCCCGGGCCSSC-EEEEEEEEEEEE-----EC--S--SCEEEEEECSCCCTTSCCBCTTCTTCSCCCCCBSCCEEEEECH
T ss_pred hhhhHHhCCCCC-eEEEEEEEEEEE-----cC--C--CeEEEEEecCCCCCcccccccCCCCccccCCCCcEEEEEEEEC
Confidence 566788888754 367888887743 11 1 1233333332 1 1 178999999
Q ss_pred hhHHHHHhhcccCcEEEEeeeEEecCCCccccCCCeeEEEEcccc
Q 008606 172 AVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEWEIFLEATS 216 (560)
Q Consensus 172 ~~~~kf~~~l~eG~vY~Is~~~V~~a~~~y~~~~~~yeI~f~~~T 216 (560)
..+.--.+.|++|+++.|.|.++|.... ...|-.+..++
T Consensus 74 ~ha~~ar~~lk~Gd~v~L~Nv~iK~~~~------g~LEG~l~~dr 112 (143)
T 4hik_A 74 EHDFYCRNYIKEGDYVVMKNVRTKIDHL------GYLECILHGDS 112 (143)
T ss_dssp HHHHHHTTTCCTTCEEEEEEEEEEECTT------SCEEEEECCCT
T ss_pred cHHHHHHhhCCCCCEEEEEeEEEeecCC------ceEEEEEcCCC
Confidence 9888777889999999999999997752 25666665554
No 85
>3k81_C MP18 RNA editing complex protein; krepa6, single domain antibody, immune system, RNA BIND protein; 3.40A {Trypanosoma brucei}
Probab=61.70 E-value=14 Score=33.72 Aligned_cols=65 Identities=14% Similarity=0.181 Sum_probs=50.9
Q ss_pred CCCCCceEEEEEEEEecccceeccCCCCCcEEEEEEE------eC-------CCCeEEEEEcchh-HHHHHhhcccCcEE
Q 008606 122 NPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL------DS-------DGGEIRVTCFNAV-VDRFYEIIEVGRVY 187 (560)
Q Consensus 122 ~p~~~~w~Ik~RV~~k~~ir~~~n~~g~gkvf~~~L~------D~-------~g~~I~at~~~~~-~~kf~~~l~eG~vY 187 (560)
-..+++..+.||+.+--++|... ..+.+|.|. |. +.+-|++++|+.+ ++...+.|+.|+-+
T Consensus 19 a~smNkViLiGrLg~DPElR~t~-----~~Va~fsLAt~~r~~~~~~ge~~~~Tdw~~Vv~wgk~lAE~~~~yL~KGs~V 93 (164)
T 3k81_C 19 CKSVNSVTLVGVVHDIQSGFVYE-----DAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAEVKQKVKEGNVV 93 (164)
T ss_dssp -CCEEEEEEEEEEECCCCEESSS-----CEECCEEEEECCC--------CCCCCEEEEEEECCHHHHHHHHHHCCTTCEE
T ss_pred hcCCcEEEEEEEeccCCEEEEcC-----ccEEEEEEEEcCceeeCCCCcCccceEEEEEEEECCHHHHHHHhhcCCCCEE
Confidence 44567899999999999998653 256666654 22 2346999999999 99999999999999
Q ss_pred EEee
Q 008606 188 LISK 191 (560)
Q Consensus 188 ~Is~ 191 (560)
+|.+
T Consensus 94 ~VeG 97 (164)
T 3k81_C 94 CVNG 97 (164)
T ss_dssp EECC
T ss_pred EEEE
Confidence 9976
No 86
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=61.43 E-value=12 Score=36.62 Aligned_cols=65 Identities=15% Similarity=0.170 Sum_probs=51.4
Q ss_pred CCCceEEEEEEEEecccceeccCCCCCcEEEEEEE-eC--------CCCeEEEEEcchhHHHHHhhcccCcEEEEeee
Q 008606 124 YQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL-DS--------DGGEIRVTCFNAVVDRFYEIIEVGRVYLISKG 192 (560)
Q Consensus 124 ~~~~w~Ik~RV~~k~~ir~~~n~~g~gkvf~~~L~-D~--------~g~~I~at~~~~~~~kf~~~l~eG~vY~Is~~ 192 (560)
.++...|.|||++--++|...+ | ..+.+|.|. +. +.+-|++++|+.+++... .|+.|+.+.|.+-
T Consensus 127 ~~N~v~l~G~l~~dpe~r~t~~--G-~~v~~f~lAv~~~~~g~~~~~t~~~~v~~wg~~Ae~~~-~l~KG~~V~V~G~ 200 (264)
T 2fxq_A 127 ALNQVILMGNLTRDPDLRYTPQ--G-TAVVRLGLAVNERRRGQEEERTHFLEVQAWRELAEWAS-ELRKGDGLLVIGR 200 (264)
T ss_dssp CCEEEEEEEEESSCCCCEECTT--C-CEEEEEEEEEECCC-------EEEEEEEEEHHHHHHHT-TCCTTCEEEEEEE
T ss_pred ceEEEEEEEEECCCCEEEECCC--C-CEEEEEEEEEcCCcCCCCccccEEEEEEEEChHHHHhh-hcCCCCEEEEEEE
Confidence 4678899999999988887643 3 267777774 21 234699999999999999 9999999999874
No 87
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=61.11 E-value=4 Score=32.09 Aligned_cols=31 Identities=29% Similarity=0.822 Sum_probs=22.4
Q ss_pred CCCCCcCccccCc-eeeecCC-eeecCcCCCccCCceeE
Q 008606 419 ACPLMIGDRQCNK-KVTQSGN-RWQCDRCNQEIDECDYR 455 (560)
Q Consensus 419 aC~~~~~~~~C~K-Kv~~~~~-~~~C~kC~~~~~~~~~r 455 (560)
-|| .|.| +|..... .|.|.+|++.+.--.|.
T Consensus 29 ~C~------fCgk~~vkR~a~GIW~C~~C~~~~AGGAy~ 61 (73)
T 1ffk_W 29 KCP------VCGFPKLKRASTSIWVCGHCGYKIAGGAYT 61 (73)
T ss_pred cCC------CCCCceeEEEEeEEEECCCCCcEEECCCcc
Confidence 489 8998 6665443 99999999986443343
No 88
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=60.63 E-value=3.4 Score=35.38 Aligned_cols=26 Identities=38% Similarity=1.140 Sum_probs=19.8
Q ss_pred CCCCCcCccccCc-eeeecC-CeeecCcCCCccC
Q 008606 419 ACPLMIGDRQCNK-KVTQSG-NRWQCDRCNQEID 450 (560)
Q Consensus 419 aC~~~~~~~~C~K-Kv~~~~-~~~~C~kC~~~~~ 450 (560)
-|| .|+| +|.... +.|.|.+|++.+.
T Consensus 62 tCP------fCGk~~vKR~avGIW~C~~Cgk~fA 89 (116)
T 3cc2_Z 62 ACP------NCGEDRVDRQGTGIWQCSYCDYKFT 89 (116)
T ss_dssp ECS------SSCCEEEEEEETTEEEETTTCCEEE
T ss_pred cCC------CCCCceeEecCceeEECCCCCCEEE
Confidence 489 9998 665444 3999999998753
No 89
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=60.32 E-value=38 Score=31.76 Aligned_cols=73 Identities=11% Similarity=0.139 Sum_probs=40.1
Q ss_pred ceeEEEEEEEEecCceeEeeccCceeeEEEEEEe----cC--------CCcEEEEEEeCcchhhhhhhHHhhhccCCccE
Q 008606 248 SIVDVIGIVISVNPSVPILRKNGMETQRRILNLK----DT--------SGRSVELTLWGDFCNKEGQKLQEMVDVGFFPV 315 (560)
Q Consensus 248 ~~VDVIGvV~~V~~~~~i~~k~G~~~~kr~i~L~----D~--------Sg~~I~vtLWg~~a~~~~~~l~~~~~~~~~~V 315 (560)
..|-|+|.|+.--+++. +.+|+.+.+-.|-+. |. .-.-+.|++|++.|+...++| ..+..
T Consensus 5 N~V~LiGrL~~DPElR~--T~~G~~Va~FsLAvn~R~~d~~~Ge~~d~~T~wi~VvawgklAE~v~~~L------~KG~~ 76 (199)
T 3eiv_A 5 TVITVVGNLVDDPELRF--TPSGAAVAKFRVASTPRTFDRQTNEWKDGESLFLTCSVWRQAAENVAESL------QRGMR 76 (199)
T ss_dssp CEEEEEEEESSCCEEEE--CTTCCEEEEEEEEECC-----------CCCCEEEEEEEETHHHHHHHHHC------CTTCE
T ss_pred cEEEEEEEECCCCeEEE--CCCCCEEEEEEEEEcCcccccCCCcEecCccEEEEEEEEhHHHHHHHHhc------CCCCE
Confidence 46778888886433332 345665443333332 11 122489999999998754443 34555
Q ss_pred EEEE-EEEEecCCC
Q 008606 316 LSVK-SGKVNDFSG 328 (560)
Q Consensus 316 V~l~-~~rV~~f~G 328 (560)
|.|. .++...|..
T Consensus 77 V~VeGrL~~rswed 90 (199)
T 3eiv_A 77 VIVQGRLKQRSYED 90 (199)
T ss_dssp EEEEEEEEEEC---
T ss_pred EEEEEEEEeeEEEC
Confidence 5554 556667754
No 90
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}
Probab=59.85 E-value=74 Score=26.35 Aligned_cols=71 Identities=13% Similarity=0.010 Sum_probs=39.8
Q ss_pred eeEEEEEEEEecCceeEeeccCceeeEEEEEEecC-----CC------cEEEEEEeCcchhhhhhhHHhhhccCCccEEE
Q 008606 249 IVDVIGIVISVNPSVPILRKNGMETQRRILNLKDT-----SG------RSVELTLWGDFCNKEGQKLQEMVDVGFFPVLS 317 (560)
Q Consensus 249 ~VDVIGvV~~V~~~~~i~~k~G~~~~kr~i~L~D~-----Sg------~~I~vtLWg~~a~~~~~~l~~~~~~~~~~VV~ 317 (560)
.|-++|.++.--+++. +.+|.... .|.|.-. .| ..|.|++||+.|+...+ + ..+..|.
T Consensus 4 ~v~L~GrLt~dPelRy--TpsG~~V~--~f~LA~~s~~~e~g~~r~~~f~i~vv~wGk~AE~~~~-----~--~kGs~V~ 72 (101)
T 3en2_A 4 RLQLVATLVEREVMRY--TPAGVPIV--NCLLSYSGQAMEAQAARQVEFSIEALGAGKMASVLDR-----I--APGTVLE 72 (101)
T ss_dssp CEEEEEEEEEECCCEE--CTTCCEEE--EEEEEEEEEEECC--EEEEEEEEEEEEETHHHHHHTT-----S--CTTCEEE
T ss_pred EEEEEEEECcCccEEE--CCCCCEEE--EEEEEEcceEecCCCcEeeeEEEEEEEEhHHHHHHhh-----c--CCCCEEE
Confidence 3667888888777754 33565432 3333222 22 13899999999886421 2 3577777
Q ss_pred EEEE-EEecCCCce
Q 008606 318 VKSG-KVNDFSGKS 330 (560)
Q Consensus 318 l~~~-rV~~f~G~s 330 (560)
+.+- ..+.|+++.
T Consensus 73 VeGrL~trs~~s~~ 86 (101)
T 3en2_A 73 CVGFLARKHRSSKA 86 (101)
T ss_dssp EEEEEEECC----C
T ss_pred EEEEEEeCcCCCCe
Confidence 7654 445677654
No 91
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=57.79 E-value=4.8 Score=31.51 Aligned_cols=26 Identities=31% Similarity=0.919 Sum_probs=19.0
Q ss_pred CCCCCcCccccCce-eeecC-CeeecCcCCCccC
Q 008606 419 ACPLMIGDRQCNKK-VTQSG-NRWQCDRCNQEID 450 (560)
Q Consensus 419 aC~~~~~~~~C~KK-v~~~~-~~~~C~kC~~~~~ 450 (560)
-|| .|+|. |.... +.|.|.+|++.+.
T Consensus 28 ~C~------fCgk~~vkR~a~GIW~C~~C~~~~A 55 (72)
T 3jyw_9 28 DCS------FCGKKTVKRGAAGIWTCSCCKKTVA 55 (72)
T ss_dssp CCS------SCCSSCBSBCSSSCBCCSSSCCCCC
T ss_pred cCC------CCCCceeEecCCCeEECCCCCCEEe
Confidence 489 89874 33333 3999999998764
No 92
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=57.45 E-value=3.8 Score=33.08 Aligned_cols=26 Identities=31% Similarity=0.933 Sum_probs=19.5
Q ss_pred CCCCCcCccccCceeeecC--CeeecCcCCCccC
Q 008606 419 ACPLMIGDRQCNKKVTQSG--NRWQCDRCNQEID 450 (560)
Q Consensus 419 aC~~~~~~~~C~KKv~~~~--~~~~C~kC~~~~~ 450 (560)
.|| .|++...... +.|.|+.|+..+.
T Consensus 29 ~Cp------~CG~~~v~r~atGiW~C~~Cg~~~a 56 (83)
T 1vq8_Z 29 ACP------NCGEDRVDRQGTGIWQCSYCDYKFT 56 (83)
T ss_dssp ECS------SSCCEEEEEEETTEEEETTTCCEEE
T ss_pred cCC------CCCCcceeccCCCeEECCCCCCEec
Confidence 599 9999554332 3999999998753
No 93
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=57.00 E-value=37 Score=36.71 Aligned_cols=79 Identities=19% Similarity=0.169 Sum_probs=54.9
Q ss_pred CceEEEEEEEEecccceeccCCCCCcEEEEEEEeCCCCeEEEEEcchhHH----HHHhhcccCcEEEEeeeEEecCCCcc
Q 008606 126 GRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVD----RFYEIIEVGRVYLISKGSLKPAQKNF 201 (560)
Q Consensus 126 ~~w~Ik~RV~~k~~ir~~~n~~g~gkvf~~~L~D~~g~~I~at~~~~~~~----kf~~~l~eG~vY~Is~~~V~~a~~~y 201 (560)
...+|.|||.++ |.. |++.=++|.|. ++.|++.+-.+.+. +....|..|+++.+.+.-++..
T Consensus 87 ~~V~v~GwV~~~---R~~------Gk~~Fi~LrD~-sg~iQvv~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t~---- 152 (529)
T 4ex5_A 87 LEVAIAGRMMLK---RVM------GKASFATVQDG-SGQIQFFVTPADVGAETYDAFKKWDLGDIVAARGVLFRTN---- 152 (529)
T ss_dssp CEEEEEEEEEEE---EEE------TTEEEEEEECS-SCEEEEEECHHHHCHHHHHHHHTCCTTCEEEEEEEEEECT----
T ss_pred cEEEEEEEEEee---ecC------CCeEEEEEEeC-CeeEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEEcC----
Confidence 468999999875 432 46655679994 56999999765421 2334599999999987655422
Q ss_pred ccCCCeeEEEEcccceEEec
Q 008606 202 NHLKNEWEIFLEATSTVDLC 221 (560)
Q Consensus 202 ~~~~~~yeI~f~~~T~I~~~ 221 (560)
...++|..++-+.+..+
T Consensus 153 ---~gelel~~~~i~vLs~a 169 (529)
T 4ex5_A 153 ---KGELSVKCTQLRLLAKA 169 (529)
T ss_dssp ---TSCEEEEEEEEEEEECC
T ss_pred ---CCcEEEEEEEEEEEecC
Confidence 24788888766666555
No 94
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A
Probab=54.43 E-value=55 Score=28.61 Aligned_cols=64 Identities=11% Similarity=0.114 Sum_probs=37.5
Q ss_pred eeEEEEEEEEecCceeEeeccCceeeEEEEEE---ecCCCc------EEEEEEeCcchhhhhhhHHhhhccCCccEEEEE
Q 008606 249 IVDVIGIVISVNPSVPILRKNGMETQRRILNL---KDTSGR------SVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVK 319 (560)
Q Consensus 249 ~VDVIGvV~~V~~~~~i~~k~G~~~~kr~i~L---~D~Sg~------~I~vtLWg~~a~~~~~~l~~~~~~~~~~VV~l~ 319 (560)
.|-++|.++.--+++. +.+|..+..-.|-. .++.|. -|.|++||+.|+...++| ..+.-|.|.
T Consensus 21 kViLiGrL~~DPElRy--TpsG~~Va~ftLA~~~~~~~~G~~~~~~~~i~vv~wGk~AE~~~~yl------~KGs~V~Ve 92 (134)
T 1v1q_A 21 RLVLSGTVCRAPLRKV--SPSGIPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHSI------TVGSRITVQ 92 (134)
T ss_dssp EEEEEEEEEEEEEEEE--CTTCCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESTGGGGGGTTC------CTTCEEEEE
T ss_pred EEEEEEEECcCCceEE--CCCCCEEEEEEEEEeCcCcCCCCEecceEEEEEEEEhHHHHHHHHhc------CCCCEEEEE
Confidence 4778888887665553 33565432222211 222331 389999999998865543 346666655
Q ss_pred E
Q 008606 320 S 320 (560)
Q Consensus 320 ~ 320 (560)
+
T Consensus 93 G 93 (134)
T 1v1q_A 93 G 93 (134)
T ss_dssp E
T ss_pred E
Confidence 3
No 95
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=54.27 E-value=5 Score=32.92 Aligned_cols=26 Identities=31% Similarity=0.919 Sum_probs=18.7
Q ss_pred CCCCCcCccccCce-eeec-CCeeecCcCCCccC
Q 008606 419 ACPLMIGDRQCNKK-VTQS-GNRWQCDRCNQEID 450 (560)
Q Consensus 419 aC~~~~~~~~C~KK-v~~~-~~~~~C~kC~~~~~ 450 (560)
-|| .|+|. |... .+.|.|.+|++.+.
T Consensus 38 ~Cp------fCgk~~vkR~a~GIW~C~~C~~~~A 65 (92)
T 3izc_m 38 DCS------FCGKKTVKRGAAGIWTCSCCKKTVA 65 (92)
T ss_dssp CCS------SSCSSCCEEEETTEEECTTTCCEEE
T ss_pred cCC------CCCCceeeecccceEEcCCCCCEEe
Confidence 489 89874 4333 34999999998763
No 96
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=53.00 E-value=52 Score=27.11 Aligned_cols=63 Identities=11% Similarity=0.123 Sum_probs=36.8
Q ss_pred eeEEEEEEEEecCceeEeeccCceeeEEEEEEe---cCCCcE-------EEEEEeCcchhhhhhhHHhhhccCCccEEEE
Q 008606 249 IVDVIGIVISVNPSVPILRKNGMETQRRILNLK---DTSGRS-------VELTLWGDFCNKEGQKLQEMVDVGFFPVLSV 318 (560)
Q Consensus 249 ~VDVIGvV~~V~~~~~i~~k~G~~~~kr~i~L~---D~Sg~~-------I~vtLWg~~a~~~~~~l~~~~~~~~~~VV~l 318 (560)
.|-++|.+..--+++. +.+|.....-.|-.. ++++ - +.|++||+.|+...++| ..+.-|.+
T Consensus 4 ~v~L~G~l~~dpelR~--t~~G~~v~~f~lA~~~~~~~~~-~~r~~~~~~~vv~~g~~Ae~~~~~l------~KG~~V~V 74 (104)
T 1txy_A 4 RLVLSGTVCRAPLRKV--SPSGIPHCQFVLEHRSVQEEAG-FHRQAWCQMPVIVSGHENQAITHSI------TVGSRITV 74 (104)
T ss_dssp EEEEEEEEEEEEEEEE--CTTSCEEEEEEEEEEEEEEETT-EEEEEEEEEEEEEESSTTHHHHTTC------CTTCEEEE
T ss_pred EEEEEEEECCCceEEE--CCCCCEEEEEEEEEeCccccCC-ceeceeEEEEEEEEhHHHHHHHhhC------CCCCEEEE
Confidence 3667888887655543 335654432222221 1222 4 99999999998754443 35666666
Q ss_pred EE
Q 008606 319 KS 320 (560)
Q Consensus 319 ~~ 320 (560)
.+
T Consensus 75 ~G 76 (104)
T 1txy_A 75 QG 76 (104)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 97
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=52.85 E-value=87 Score=25.89 Aligned_cols=72 Identities=13% Similarity=0.113 Sum_probs=42.2
Q ss_pred eeEEEEEEEEecCceeEeeccCceeeEEEEEE---ecCCC------cEEEEEEeCcchhhhhhhHHhhhccCCccEEEEE
Q 008606 249 IVDVIGIVISVNPSVPILRKNGMETQRRILNL---KDTSG------RSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVK 319 (560)
Q Consensus 249 ~VDVIGvV~~V~~~~~i~~k~G~~~~kr~i~L---~D~Sg------~~I~vtLWg~~a~~~~~~l~~~~~~~~~~VV~l~ 319 (560)
.|-++|.++.--+++. +.+|..+..-.|-. .+..| ..+.|++||+.|+ . ++| ..+.-|.+.
T Consensus 9 kv~LiG~L~~dPelRy--tp~G~~v~~f~lA~~~~~~~~g~~~~~~~~i~vv~~gk~Ae-~-~~l------~KG~~v~ve 78 (103)
T 3k8a_A 9 LVSLAALIEKAFPIRY--TPAGIPVLDIILKHESWQEENGQQCLVQLEIPARILGRQAE-E-WQY------RQGDCATVE 78 (103)
T ss_dssp EEEEEEEEEEECCCEE--CTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEHHHHH-H-STT------CTTCEEEEE
T ss_pred EEEEEEEECCCCceEE--CCCCCEEEEEEEEEcccCccCCCEEEeeEEEEEEEEhHHhh-h-hcc------CCCCEEEEE
Confidence 4778888888776654 33565432222222 11222 1389999999987 3 222 356667665
Q ss_pred E-EEEecCCCce
Q 008606 320 S-GKVNDFSGKS 330 (560)
Q Consensus 320 ~-~rV~~f~G~s 330 (560)
+ .+...|+++.
T Consensus 79 GrL~~rs~~~~~ 90 (103)
T 3k8a_A 79 GFLAQKSRRSLM 90 (103)
T ss_dssp EEEEESSSSCCC
T ss_pred EEEEECccCCcc
Confidence 4 4566787763
No 98
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei}
Probab=52.82 E-value=29 Score=33.84 Aligned_cols=61 Identities=13% Similarity=0.160 Sum_probs=47.6
Q ss_pred CCceEEEEEEEEecccceeccCCCCCcEEEEEEE------eCCCC-------eEEEEEcchh--HHHHHhhcccCcEEEE
Q 008606 125 QGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL------DSDGG-------EIRVTCFNAV--VDRFYEIIEVGRVYLI 189 (560)
Q Consensus 125 ~~~w~Ik~RV~~k~~ir~~~n~~g~gkvf~~~L~------D~~g~-------~I~at~~~~~--~~kf~~~l~eG~vY~I 189 (560)
.++..|.||+ +--++|... | ..+.+|.|. |.+++ -|++++|+.. ++ +...|+.|+-+.|
T Consensus 146 lNkV~LiGrL-~DPElR~t~---G-~~Va~FslAv~~~~~~~~~~e~~~~Tdw~~Vv~wgk~~~AE-i~~~L~KG~~V~V 219 (257)
T 4dni_A 146 VNSVTLVGVV-HDIQSGFVY---E-DAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAE-VKQKVKEGNVVCV 219 (257)
T ss_dssp EEEEEEEEEE-EEEEEEEET---T-EEEEEEEEEEEEEECCCTTCSCEEEEEEEEEEEESHHHHHH-HHHHCCTTCEEEE
T ss_pred cCEEEEEEEc-CCCEEEEeC---C-cEEEEEEEEECCCccCCCCceEccceEEEEEEEECCccHHH-HHhhCCCCCEEEE
Confidence 3678999999 888888653 3 267777774 33333 5999999998 88 8888999999998
Q ss_pred ee
Q 008606 190 SK 191 (560)
Q Consensus 190 s~ 191 (560)
.+
T Consensus 220 eG 221 (257)
T 4dni_A 220 NG 221 (257)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 99
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=52.63 E-value=8.9 Score=27.76 Aligned_cols=26 Identities=31% Similarity=1.022 Sum_probs=19.6
Q ss_pred EeCCCCCcCccccCc--eeeecCCeeecCcCCCc
Q 008606 417 YTACPLMIGDRQCNK--KVTQSGNRWQCDRCNQE 448 (560)
Q Consensus 417 Y~aC~~~~~~~~C~K--Kv~~~~~~~~C~kC~~~ 448 (560)
..-|| .|+. -+....+.++|.+|+-+
T Consensus 19 ~k~CP------~CG~~~fm~~~~~R~~C~kCG~t 46 (50)
T 3j20_Y 19 NKFCP------RCGPGVFMADHGDRWACGKCGYT 46 (50)
T ss_dssp SEECS------SSCSSCEEEECSSEEECSSSCCE
T ss_pred cccCC------CCCCceEEecCCCeEECCCCCCE
Confidence 45599 8988 44555569999999864
No 100
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=52.62 E-value=47 Score=29.75 Aligned_cols=71 Identities=15% Similarity=0.147 Sum_probs=39.6
Q ss_pred eeEEEEEEEEecCceeEeeccCceeeEEEEEE----ecC-CCc------EEEEEEeCcchhhhhhhHHhhhccCCccEEE
Q 008606 249 IVDVIGIVISVNPSVPILRKNGMETQRRILNL----KDT-SGR------SVELTLWGDFCNKEGQKLQEMVDVGFFPVLS 317 (560)
Q Consensus 249 ~VDVIGvV~~V~~~~~i~~k~G~~~~kr~i~L----~D~-Sg~------~I~vtLWg~~a~~~~~~l~~~~~~~~~~VV~ 317 (560)
.|-++|.|..--.++. +.+|+.+.+-.|-. .|. +|. -+.|++||+.|+...++| ..+..|.
T Consensus 10 ~V~LiGrL~~dPelr~--t~~G~~v~~f~lA~~~~~~d~~~Ge~~e~t~~i~vv~wg~~Ae~~~~~l------~KG~~V~ 81 (158)
T 3tqy_A 10 KVILIGNLGQDPEVRY--TPNGNAVANVTLATSTTWRDKQTGELQERTEWHRIAFFNRLAEIVGEYL------RKGSKIY 81 (158)
T ss_dssp EEEEEEEESSSCEEEE--CTTCCEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEEETHHHHHHHHHC------CTTCEEE
T ss_pred EEEEEEEECCCCEEEE--CCCCCEEEEEEEEEcCceeccCCCCEeeeeEEEEEEEEhHHHHHHHhhc------CCCCEEE
Confidence 4777888876333332 34565543333322 333 342 379999999988754433 3566665
Q ss_pred EE-EEEEecCC
Q 008606 318 VK-SGKVNDFS 327 (560)
Q Consensus 318 l~-~~rV~~f~ 327 (560)
|. ..+...|.
T Consensus 82 VeG~L~~~~~~ 92 (158)
T 3tqy_A 82 IEGSLRTRKWQ 92 (158)
T ss_dssp EEEEEEEEEEE
T ss_pred EEEEEEeeeEE
Confidence 54 44555563
No 101
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=52.41 E-value=11 Score=44.75 Aligned_cols=76 Identities=22% Similarity=0.229 Sum_probs=36.9
Q ss_pred cCccchhc----ccCCceeEEEEEEEEecCceeEeeccCceeeEEEEEEecCCCcEEEEEEeCcchhhhhhhHHhhhccC
Q 008606 236 RHISEIES----AENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSGRSVELTLWGDFCNKEGQKLQEMVDVG 311 (560)
Q Consensus 236 ~~i~dI~~----~~~~~~VDVIGvV~~V~~~~~i~~k~G~~~~kr~i~L~D~Sg~~I~vtLWg~~a~~~~~~l~~~~~~~ 311 (560)
+++++|.. ...+..|-|.|+|+.+.... +|+|+. .--++|.|.+| .+++++|.+...++...| .
T Consensus 1027 ~~~~~l~~~~~~~~~g~~v~v~G~v~~~~~~~---Tk~G~~--maf~tleD~tg-~~evvvf~~~~~~~~~~l------~ 1094 (1220)
T 2hpi_A 1027 CTIEELSEFVRELPGKPKVLLSGMVEEVVRKP---TRSGGM--MARFTLSDETG-ALEVVVFGRAYEGVSPKL------K 1094 (1220)
T ss_dssp SCTTTHHHHHSSSSSSCEEEEEEEECCC-----------------CEEEEETTE-EEEEC-------------------C
T ss_pred ccHHHHhhhhhhccCCCeEEEEEEEEEEEEee---cCCCCe--EEEEEEEECCC-CEEEEEcHHHHHHHHHHh------c
Confidence 46667743 34566788999999887653 455643 45689999999 799999999877653332 2
Q ss_pred CccEEEEEEEEEe
Q 008606 312 FFPVLSVKSGKVN 324 (560)
Q Consensus 312 ~~~VV~l~~~rV~ 324 (560)
.+.+|.+++ +|.
T Consensus 1095 ~~~~~~v~G-~v~ 1106 (1220)
T 2hpi_A 1095 EDIPLLVLA-EVE 1106 (1220)
T ss_dssp TTCEEEEEE-EEC
T ss_pred cCCEEEEEE-EEE
Confidence 345665654 554
No 102
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=52.38 E-value=50 Score=28.07 Aligned_cols=64 Identities=11% Similarity=0.116 Sum_probs=37.0
Q ss_pred eeEEEEEEEEecCceeEeeccCceeeEEEEEEe---cCCCc------EEEEEEeCcchhhhhhhHHhhhccCCccEEEEE
Q 008606 249 IVDVIGIVISVNPSVPILRKNGMETQRRILNLK---DTSGR------SVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVK 319 (560)
Q Consensus 249 ~VDVIGvV~~V~~~~~i~~k~G~~~~kr~i~L~---D~Sg~------~I~vtLWg~~a~~~~~~l~~~~~~~~~~VV~l~ 319 (560)
.|-++|.++.--+++. +.+|.....-.|... ++.|. .|.|++||+.|+.. ++| ..+.-|.|.
T Consensus 3 kviL~GrL~~dPelRy--TpsG~~V~~f~LA~~~~~~~~g~~r~~~~~i~vv~~Gk~AE~~-~~l------~kGs~V~Ve 73 (115)
T 3fhw_A 3 TLELSARVLECGAMRH--TPAGLPALELLLVHESEVVEAGHPRRVELTISAVALGDLALLL-ADT------PLGTEMQVQ 73 (115)
T ss_dssp EEEEEEEEEEECCCEE--CTTSCEEEEEEEEEEEECCCCC--CEEEEEEEEEEETHHHHHH-TTC------CTTCEEEEE
T ss_pred EEEEEEEECcCcceEE--CCCCCEEEEEEEEEcceeecCCCeeeeeEEEEEEEEhHHHHhh-hcc------CCCCEEEEE
Confidence 3567888888777763 335654332222221 12221 28899999998874 332 356777665
Q ss_pred EE
Q 008606 320 SG 321 (560)
Q Consensus 320 ~~ 321 (560)
+-
T Consensus 74 Gr 75 (115)
T 3fhw_A 74 GF 75 (115)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 103
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=50.82 E-value=5.1 Score=32.28 Aligned_cols=26 Identities=35% Similarity=1.030 Sum_probs=19.0
Q ss_pred CCCCCcCccccCce-eeec-CCeeecCcCCCccC
Q 008606 419 ACPLMIGDRQCNKK-VTQS-GNRWQCDRCNQEID 450 (560)
Q Consensus 419 aC~~~~~~~~C~KK-v~~~-~~~~~C~kC~~~~~ 450 (560)
-|| .|+|. |... .+.|.|.+|++.+.
T Consensus 37 ~Cp------fCGk~~vkR~a~GIW~C~kCg~~~A 64 (83)
T 3j21_i 37 TCP------VCGRKAVKRISTGIWQCQKCGATFA 64 (83)
T ss_dssp CCS------SSCSSCEEEEETTEEEETTTCCEEE
T ss_pred CCC------CCCCceeEecCcCeEEcCCCCCEEe
Confidence 489 99875 4332 34999999998763
No 104
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=49.55 E-value=60 Score=34.66 Aligned_cols=80 Identities=20% Similarity=0.232 Sum_probs=55.6
Q ss_pred CCceEEEEEEEEecccceeccCCCCCcEEEEEEEeCCCCeEEEEEcchhHH----HHHhhcccCcEEEEeeeEEecCCCc
Q 008606 125 QGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVD----RFYEIIEVGRVYLISKGSLKPAQKN 200 (560)
Q Consensus 125 ~~~w~Ik~RV~~k~~ir~~~n~~g~gkvf~~~L~D~~g~~I~at~~~~~~~----kf~~~l~eG~vY~Is~~~V~~a~~~ 200 (560)
....+|.|||.++ |. .|++.=++|.|. ++.|++.+-.+.+. +....|..|+++.+.+.-++..
T Consensus 56 ~~~V~v~Gwv~~~---R~------~gk~~F~~LrD~-sg~iQvv~~~~~~~~~~~~~~~~l~~g~~v~V~G~v~~~~--- 122 (493)
T 3a74_A 56 QIEVAVAGRIMTK---RG------MGKAGFAHIQDV-TGQIQIYVRQDDVGEQQYELFKISDLGDIVGVRGTMFKTK--- 122 (493)
T ss_dssp CCEEEEEEEEEEE---EE------ETTEEEEEEEET-TEEEEEEEEHHHHHHHHHHHHHHCCTTCEEEEEEEEEECT---
T ss_pred CCEEEEEEEEEEE---ec------CCCcEEEEEEEC-CEeEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEeCC---
Confidence 3468999999874 43 246666779994 56999999654321 1225699999999998765542
Q ss_pred cccCCCeeEEEEcccceEEec
Q 008606 201 FNHLKNEWEIFLEATSTVDLC 221 (560)
Q Consensus 201 y~~~~~~yeI~f~~~T~I~~~ 221 (560)
...++|..++-..+..+
T Consensus 123 ----~ge~ei~~~~i~vl~~~ 139 (493)
T 3a74_A 123 ----VGELSIKVSSYEFLTKA 139 (493)
T ss_dssp ----TCCEEEEEEEEEEEECC
T ss_pred ----CCcEEEEEEEEEEcccc
Confidence 14789988876666655
No 105
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=49.32 E-value=43 Score=35.89 Aligned_cols=80 Identities=16% Similarity=0.203 Sum_probs=55.7
Q ss_pred CCceEEEEEEEEecccceeccCCCCCcEEEEEEEeCCCCeEEEEEcchhH-----HHHHhhcccCcEEEEeeeEEecCCC
Q 008606 125 QGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVV-----DRFYEIIEVGRVYLISKGSLKPAQK 199 (560)
Q Consensus 125 ~~~w~Ik~RV~~k~~ir~~~n~~g~gkvf~~~L~D~~g~~I~at~~~~~~-----~kf~~~l~eG~vY~Is~~~V~~a~~ 199 (560)
....+|.|||.++ |. .|++.=++|.|. ++.|++.+-.+.+ ++....|..|+++.+.+.-++..
T Consensus 64 ~~~V~v~Gwv~~~---R~------~gk~~F~~LrD~-sg~iQvv~~~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~-- 131 (504)
T 1e1o_A 64 NIEVSVAGRMMTR---RI------MGKASFVTLQDV-GGRIQLYVARDSLPEGVYNDQFKKWDLGDIIGARGTLFKTQ-- 131 (504)
T ss_dssp CCEEEEEEEEEEE---EE------ETTEEEEEEEET-TEEEEEEEETTTSSTTHHHHTGGGCCTTCEEEEEEEEEECT--
T ss_pred CCEEEEEEEEEEE---ec------CCCcEEEEEEEC-CeeEEEEEECCcCCHHHHHHHHhcCCCCCEEEEEEEEEecC--
Confidence 3468999999874 43 246666779994 5699999965422 21336799999999998765542
Q ss_pred ccccCCCeeEEEEcccceEEec
Q 008606 200 NFNHLKNEWEIFLEATSTVDLC 221 (560)
Q Consensus 200 ~y~~~~~~yeI~f~~~T~I~~~ 221 (560)
...++|..++-..+..+
T Consensus 132 -----~ge~ei~~~~i~vl~~a 148 (504)
T 1e1o_A 132 -----TGELSIHCTELRLLTKA 148 (504)
T ss_dssp -----TCCEEEEEEEEEEEECC
T ss_pred -----CceEEEEEEEEEEeccc
Confidence 14788888776666655
No 106
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=48.45 E-value=54 Score=28.42 Aligned_cols=70 Identities=14% Similarity=0.105 Sum_probs=37.3
Q ss_pred eEEEEEEEEecCceeEeeccCceeeEEEEE----EecCCCc------EEEEEEeCcchhhhhhhHHhhhccCCccEEEEE
Q 008606 250 VDVIGIVISVNPSVPILRKNGMETQRRILN----LKDTSGR------SVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVK 319 (560)
Q Consensus 250 VDVIGvV~~V~~~~~i~~k~G~~~~kr~i~----L~D~Sg~------~I~vtLWg~~a~~~~~~l~~~~~~~~~~VV~l~ 319 (560)
|-++|.|..--.++. +.+|.....-.|- ..|..|. -+.|++||+.|+...++| ..+..|.|.
T Consensus 5 V~L~GrL~~dPelr~--t~~G~~v~~f~lA~~~~~~~~~G~~~~~t~~~~v~~wg~~Ae~~~~~l------~KG~~V~V~ 76 (134)
T 2vw9_A 5 VIMVGRLTRNVELKY--LPSGSAAATIGLATSRRFKKQDGTLGEEVCFIDARLFGRTAEIANQYL------SKGSSVLIE 76 (134)
T ss_dssp EEEEEEESSCCEEEE--CTTSCEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEHHHHHHHHHHC------CTTCEEEEE
T ss_pred EEEEEEECCCCEEEE--CCCCCEEEEEEEEEeCCeECCCCCCccccEEEEEEEEcHHHHHHHHhC------CCCCEEEEE
Confidence 567777765333322 3356543222221 1233332 499999999988754332 355666554
Q ss_pred -EEEEecCC
Q 008606 320 -SGKVNDFS 327 (560)
Q Consensus 320 -~~rV~~f~ 327 (560)
..+...|.
T Consensus 77 G~L~~~~~~ 85 (134)
T 2vw9_A 77 GRLTYESWM 85 (134)
T ss_dssp EEEEEEEEE
T ss_pred EEEEeeeEE
Confidence 34555564
No 107
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=47.86 E-value=49 Score=34.41 Aligned_cols=68 Identities=16% Similarity=0.322 Sum_probs=52.4
Q ss_pred eeccccCCCCCceEEEEEEEEecccceeccCCCCCcEEEEEEEeCCCCeEEEEEcc--hhHHHHHhhcccCcEEEEeee
Q 008606 116 IPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFN--AVVDRFYEIIEVGRVYLISKG 192 (560)
Q Consensus 116 ~pI~~L~p~~~~w~Ik~RV~~k~~ir~~~n~~g~gkvf~~~L~D~~g~~I~at~~~--~~~~kf~~~l~eG~vY~Is~~ 192 (560)
.+|+++.||+. ..+++.|...- +.- .|...-|.|.| ++++|.|.+|. ....+.-..|..|+.+.+.+.
T Consensus 276 ~~i~~~~~~~~-~~v~G~V~~~P--~~~-----~GGHV~f~l~d-~~~~i~c~ayeptk~fr~~vr~L~~GD~V~v~G~ 345 (402)
T 3au7_A 276 EEVHRLENYRS-YRLRGRVTLEP--YDI-----EGGHVFFEIDT-KFGSVKCAAFEPTKQFRNVIRLLRKGDVVEVYGS 345 (402)
T ss_dssp GGCSSCCTTCE-EEEEEEEEEEE--EEE-----TTTEEEEEEEE-TTEEEEEEECGGGTTHHHHHTTCCTTCEEEEEEE
T ss_pred ccccccccCce-EEEEEEEecCc--Eec-----cCceEEEEEEc-CCCEEEEEEEccchHHHHHHhcCCCCCEEEEEEe
Confidence 44889998876 57899998752 111 34567788889 68899999998 457777788999999998876
No 108
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=46.94 E-value=58 Score=27.25 Aligned_cols=71 Identities=15% Similarity=0.158 Sum_probs=39.3
Q ss_pred eeEEEEEEEEecCceeEeeccCceeeEEEEEEec----CCC----cEEEEEEeCcchhhhhhhHHhhhccCCccEEEEE-
Q 008606 249 IVDVIGIVISVNPSVPILRKNGMETQRRILNLKD----TSG----RSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVK- 319 (560)
Q Consensus 249 ~VDVIGvV~~V~~~~~i~~k~G~~~~kr~i~L~D----~Sg----~~I~vtLWg~~a~~~~~~l~~~~~~~~~~VV~l~- 319 (560)
.|-++|.|..--.++. +.+|....+-.|-... ..| .-+.|++||+.|+...++| ..+..|.+.
T Consensus 7 ~v~l~G~l~~dpe~r~--t~~G~~v~~f~la~~~~~~~~~g~~~t~~~~v~~wg~~Ae~~~~~l------~KG~~V~V~G 78 (116)
T 3vdy_A 7 QVMLVGRLTKDPDLRY--TSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYC------QKGSLVGVSG 78 (116)
T ss_dssp CEEEEEEESSCCEEEE--CTTSCEEEEEEEEEECSSCCSSSCCCEEEEEEEEEHHHHHHHHHHC------CTTCEEEEEE
T ss_pred EEEEEEEEccCcEEEE--CCCCCEEEEEEEEEeccccCCCCccccEEEEEEEECHHHHHHHHhC------CCCCEEEEEE
Confidence 4667888876333322 3456554333333321 122 2499999999988754332 356666554
Q ss_pred EEEEecCC
Q 008606 320 SGKVNDFS 327 (560)
Q Consensus 320 ~~rV~~f~ 327 (560)
..+...|.
T Consensus 79 ~l~~~~~~ 86 (116)
T 3vdy_A 79 RIQTRSYE 86 (116)
T ss_dssp EEEEEEEC
T ss_pred EEEeeEEE
Confidence 34555564
No 109
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=46.45 E-value=9.2 Score=31.61 Aligned_cols=26 Identities=31% Similarity=0.767 Sum_probs=19.3
Q ss_pred eCCCCCcCccccCceeeecCCeeecCcCCCcc
Q 008606 418 TACPLMIGDRQCNKKVTQSGNRWQCDRCNQEI 449 (560)
Q Consensus 418 ~aC~~~~~~~~C~KKv~~~~~~~~C~kC~~~~ 449 (560)
.-|| .|..-++..++.++|+.|++.+
T Consensus 33 ~~CP------~Cq~eL~~~g~~~hC~~C~~~f 58 (101)
T 2jne_A 33 LHCP------QCQHVLDQDNGHARCRSCGEFI 58 (101)
T ss_dssp CBCS------SSCSBEEEETTEEEETTTCCEE
T ss_pred ccCc------cCCCcceecCCEEECccccchh
Confidence 5688 8888887776667788887643
No 110
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=46.38 E-value=6.8 Score=32.15 Aligned_cols=26 Identities=27% Similarity=0.663 Sum_probs=19.0
Q ss_pred CCCCCcCccccCce-eeec-CCeeecCcCCCccC
Q 008606 419 ACPLMIGDRQCNKK-VTQS-GNRWQCDRCNQEID 450 (560)
Q Consensus 419 aC~~~~~~~~C~KK-v~~~-~~~~~C~kC~~~~~ 450 (560)
-|| .|+|. |... .+.|.|.+|++.+.
T Consensus 38 ~Cp------fCgk~~vkR~a~GIW~C~~Cg~~~A 65 (92)
T 3iz5_m 38 FCE------FCGKFAVKRKAVGIWGCKDCGKVKA 65 (92)
T ss_dssp CCT------TTCSSCBEEEETTEEECSSSCCEEE
T ss_pred cCc------ccCCCeeEecCcceEEcCCCCCEEe
Confidence 599 89874 3332 34999999998763
No 111
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=45.68 E-value=11 Score=42.78 Aligned_cols=71 Identities=11% Similarity=0.230 Sum_probs=51.1
Q ss_pred CCcceeccccCCCCCceEEEEEEEEecccceeccCCCCCcEEEEEEEeCCCCeEEEEEcchhHHHHHhhccc--CcEEEE
Q 008606 112 PARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEV--GRVYLI 189 (560)
Q Consensus 112 ~~~~~pI~~L~p~~~~w~Ik~RV~~k~~ir~~~n~~g~gkvf~~~L~D~~g~~I~at~~~~~~~kf~~~l~e--G~vY~I 189 (560)
.....+|++|.++. .-+|.|+|.+....+ + +.++.+.+.+.|. .+.|.+++|+.. -....|++ |+.|.+
T Consensus 153 ~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~-~----~~~~~~~~~~~d~-~~~~~~~~f~~~--~~~~~~~~~~g~~~~~ 223 (780)
T 1gm5_A 153 RRKIFKLNDLLPGE-KVTTQGKIVSVETKK-F----QNMNILTAVLSDG-LVHVPLKWFNQD--YLQTYLKQLTGKEVFV 223 (780)
T ss_dssp CSCCCCSSCCCSSC-CCEEEECCCCCEEEE-C----SSCEEEEEEECCS-SCCEEEEECSCC--TTHHHHHTTCSSCEEE
T ss_pred CCcCCcHHHcCCCC-EEEEEEEEEEEEeec-C----CCCeEEEEEEEEC-CceEEEEEECcH--HHHhhCccCCCCEEEE
Confidence 45667889998865 578999998753321 1 2346788888894 458999999942 24567888 999988
Q ss_pred ee
Q 008606 190 SK 191 (560)
Q Consensus 190 s~ 191 (560)
++
T Consensus 224 ~G 225 (780)
T 1gm5_A 224 TG 225 (780)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 112
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=43.36 E-value=16 Score=26.02 Aligned_cols=27 Identities=22% Similarity=0.711 Sum_probs=20.6
Q ss_pred eCCCCCcCccccCc-eeeecC--CeeecCcCCCccC
Q 008606 418 TACPLMIGDRQCNK-KVTQSG--NRWQCDRCNQEID 450 (560)
Q Consensus 418 ~aC~~~~~~~~C~K-Kv~~~~--~~~~C~kC~~~~~ 450 (560)
..|| .|+. .+..+. +.+.|..|+..++
T Consensus 6 ~~CP------~C~~~~l~~d~~~gelvC~~CG~v~~ 35 (50)
T 1pft_A 6 KVCP------ACESAELIYDPERGEIVCAKCGYVIE 35 (50)
T ss_dssp CSCT------TTSCCCEEEETTTTEEEESSSCCBCC
T ss_pred EeCc------CCCCcceEEcCCCCeEECcccCCccc
Confidence 3799 9988 776543 3899999998653
No 113
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=43.15 E-value=11 Score=27.46 Aligned_cols=24 Identities=17% Similarity=0.492 Sum_probs=18.3
Q ss_pred EeCCCCCcCccccCceeeecCCeeecCcCCCc
Q 008606 417 YTACPLMIGDRQCNKKVTQSGNRWQCDRCNQE 448 (560)
Q Consensus 417 Y~aC~~~~~~~~C~KKv~~~~~~~~C~kC~~~ 448 (560)
..-|| .|+..+. .+.|.|.+|+.+
T Consensus 14 k~iCp------kC~a~~~--~gaw~CrKCG~~ 37 (51)
T 3j21_g 14 KYVCL------RCGATNP--WGAKKCRKCGYK 37 (51)
T ss_dssp EEECT------TTCCEEC--TTCSSCSSSSSC
T ss_pred CccCC------CCCCcCC--CCceecCCCCCc
Confidence 34599 9999833 348999999975
No 114
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=42.30 E-value=7.8 Score=32.40 Aligned_cols=25 Identities=36% Similarity=0.963 Sum_probs=18.4
Q ss_pred CCCCcCccccCce-eeec-CCeeecCcCCCccC
Q 008606 420 CPLMIGDRQCNKK-VTQS-GNRWQCDRCNQEID 450 (560)
Q Consensus 420 C~~~~~~~~C~KK-v~~~-~~~~~C~kC~~~~~ 450 (560)
|| .|+|. |... .+.|.|.+|++.+.
T Consensus 39 Cp------fCgk~~vKR~a~GIW~C~kCg~~~A 65 (103)
T 4a17_Y 39 CP------FCGKVAVKRAAVGIWKCKPCKKIIA 65 (103)
T ss_dssp CT------TTCCEEEEEEETTEEEETTTTEEEE
T ss_pred CC------CCCCceeeecCcceEEcCCCCCEEe
Confidence 89 89874 4333 34999999998764
No 115
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=42.19 E-value=1e+02 Score=26.15 Aligned_cols=73 Identities=12% Similarity=0.050 Sum_probs=38.8
Q ss_pred eeEEEEEEEEecCceeEeeccCceeeEEEEEE----ecC-CCc------EEEEEEeC-cchhhhhhhHHhhhccCCccEE
Q 008606 249 IVDVIGIVISVNPSVPILRKNGMETQRRILNL----KDT-SGR------SVELTLWG-DFCNKEGQKLQEMVDVGFFPVL 316 (560)
Q Consensus 249 ~VDVIGvV~~V~~~~~i~~k~G~~~~kr~i~L----~D~-Sg~------~I~vtLWg-~~a~~~~~~l~~~~~~~~~~VV 316 (560)
.|-++|.|..--.++. +.+|+...+-.|-. .|. +|. -+.|++|| ..|+...++| ..+..|
T Consensus 8 ~v~l~Grl~~dpelr~--t~~G~~v~~f~lA~~~~~~~~~~G~~~~~t~~~~v~~wg~~~Ae~~~~~l------~KG~~V 79 (124)
T 3ulp_A 8 KIMLIGRVGCEPDIKI--LNGGDKVATFSLATNEFWRDRNTNELKSKTDWHRIVVYDQNIVDLIDKYL------RKGRRV 79 (124)
T ss_dssp EEEEEEEECSCCEEEE--CTTSCEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEECCHHHHHHHHHHC------CTTCEE
T ss_pred EEEEEEEECCCcEEEE--CCCCCEEEEEEEEEccceecccCCcEecccEEEEEEEEEchHHHHHHhhc------CCCCEE
Confidence 4667777775333322 34565433222222 232 232 49999999 7887754433 345655
Q ss_pred EEE-EEEEecCCCc
Q 008606 317 SVK-SGKVNDFSGK 329 (560)
Q Consensus 317 ~l~-~~rV~~f~G~ 329 (560)
.+. ..+...|..+
T Consensus 80 ~V~G~L~~~~~~d~ 93 (124)
T 3ulp_A 80 YVQGSLHTRKWHTN 93 (124)
T ss_dssp EEEEEEEEEEECC-
T ss_pred EEEEEEEeEEEeCC
Confidence 554 4455566543
No 116
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=39.66 E-value=15 Score=29.40 Aligned_cols=20 Identities=20% Similarity=0.806 Sum_probs=8.7
Q ss_pred ccCceeeecCCeeecCcCCC
Q 008606 428 QCNKKVTQSGNRWQCDRCNQ 447 (560)
Q Consensus 428 ~C~KKv~~~~~~~~C~kC~~ 447 (560)
.|..-+..++..++|+.|++
T Consensus 7 ~C~~~l~~~~~~~~C~~C~~ 26 (81)
T 2jrp_A 7 VCHHALERNGDTAHCETCAK 26 (81)
T ss_dssp SSCSCCEECSSEEECTTTCC
T ss_pred CCCCccccCCCceECccccc
Confidence 44444444433344444443
No 117
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=39.15 E-value=18 Score=42.96 Aligned_cols=74 Identities=16% Similarity=0.220 Sum_probs=34.1
Q ss_pred eeccccC------CCCCceEEEEEEEEecccceeccCCCCCcEEEEEEEeCCCCeEEEEEcchhHHHHHhhcccCcEEEE
Q 008606 116 IPIAALN------PYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLI 189 (560)
Q Consensus 116 ~pI~~L~------p~~~~w~Ik~RV~~k~~ir~~~n~~g~gkvf~~~L~D~~g~~I~at~~~~~~~kf~~~l~eG~vY~I 189 (560)
+++++|. +....-+|.|-|+..-..+ .++|+ ++.-+.|-| ..|.|.+++|.+..++|.+.|.+|.++.+
T Consensus 1027 ~~~~~l~~~~~~~~~g~~v~v~G~v~~~~~~~---Tk~G~-~maf~tleD-~tg~~evvvf~~~~~~~~~~l~~~~~~~v 1101 (1220)
T 2hpi_A 1027 CTIEELSEFVRELPGKPKVLLSGMVEEVVRKP---TRSGG-MMARFTLSD-ETGALEVVVFGRAYEGVSPKLKEDIPLLV 1101 (1220)
T ss_dssp SCTTTHHHHHSSSSSSCEEEEEEEECCC----------------CEEEEE-TTEEEEEC-------------CTTCEEEE
T ss_pred ccHHHHhhhhhhccCCCeEEEEEEEEEEEEee---cCCCC-eEEEEEEEE-CCCCEEEEEcHHHHHHHHHHhccCCEEEE
Confidence 4667774 2233456777777654332 23332 344456778 67789999999999999999999999998
Q ss_pred eeeEEe
Q 008606 190 SKGSLK 195 (560)
Q Consensus 190 s~~~V~ 195 (560)
.+ +|.
T Consensus 1102 ~G-~v~ 1106 (1220)
T 2hpi_A 1102 LA-EVE 1106 (1220)
T ss_dssp EE-EEC
T ss_pred EE-EEE
Confidence 64 554
No 118
>3rlo_A Gamma-interferon-inducible protein 16; HIN200/OB fold/DNA binding, DNA binding/cytosolic DNA sensor cytosol, DNA binding protein; 1.80A {Homo sapiens} PDB: 3rnu_A* 3b6y_A 3rln_A
Probab=38.23 E-value=2.5e+02 Score=26.07 Aligned_cols=175 Identities=15% Similarity=0.164 Sum_probs=114.8
Q ss_pred EEEEEEEEecccceeccCCCCCcEEEEEEEeCCCCeEEEEEcchhHHHHHhhcccCcEEEEeeeEEecCCCccccCCCee
Q 008606 129 AIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNEW 208 (560)
Q Consensus 129 ~Ik~RV~~k~~ir~~~n~~g~gkvf~~~L~D~~g~~I~at~~~~~~~kf~~~l~eG~vY~Is~~~V~~a~~~y~~~~~~y 208 (560)
-..|.|+.-.+.=.|.... ..++|+-+.+- +..-.++.+|+-.. .+.+..++++.||+..-. .-
T Consensus 11 P~~VmVLkaTepF~Ye~~E-~k~MFHATVAT-etqfF~VKVfn~~L---KeKF~pk~iI~ISdY~~~-----------~g 74 (204)
T 3rlo_A 11 LKEVMVLNATESFVYEPKE-QKKMFHATVAT-ENEVFRVKVFNIDL---KEKFTPKKIIAIANYVCR-----------NG 74 (204)
T ss_dssp CEEEEEEEECCCEEEETTT-TEEEEEEEEEC-SSCEEEEEECCGGG---TTTTCTTCEEEEESCEEE-----------TT
T ss_pred CeEEEEEeccCCceecccc-cceEEEEEEee-ccceEEEEEecchh---hhhcCCCcEEEEEecccc-----------cc
Confidence 3567777777777777655 34688888888 78899999999644 567888999999986422 22
Q ss_pred EEEEcccceEEecc-CCCCCCCcccc----cccCccchhcccCCceeEEEEEEEEecCceeEeeccCceeeEEEEEEecC
Q 008606 209 EIFLEATSTVDLCT-EEDDSIPKQQF----SFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDT 283 (560)
Q Consensus 209 eI~f~~~T~I~~~~-d~~~~iP~~~f----~f~~i~dI~~~~~~~~VDVIGvV~~V~~~~~i~~k~G~~~~kr~i~L~D~ 283 (560)
-|-.++.|.|.++. |.-..||...- .--+|++|.....+.+|+=+=.|.... .+ . ......|.|+
T Consensus 75 fLEi~~~SsVse~~~dq~~eVp~~ii~~A~~TPKI~~L~~q~~Gt~V~G~F~v~KK~------v~-~---~~~~YeI~Dn 144 (204)
T 3rlo_A 75 FLEVYPFTLVADVNADRNMEIPKGLIRSASVTPKINQLCSQTKGSFVNGVFEVHKKN------VR-G---EFTYYEIQDN 144 (204)
T ss_dssp EEEECTTSEEEECCSSSCCCCCHHHHHHHHCCCCHHHHHTCSSCEEEEEEEEEEEEE------EE-T---TEEEEEEEET
T ss_pred eEEEecccEEEEccCCceeEcCHHHHHhcccCcchhhhhcCCCCCEEeEEEEEEEEE------ec-c---ceEEEEEecC
Confidence 46777888998874 33345675321 223578887766787776443333321 11 1 2345789999
Q ss_pred CCcEEEEEEeCcchhhhhhhHHhhhccCCccEEEEEEEEEecCC-Cc-eecccCCeEE
Q 008606 284 SGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFS-GK-SIGTIPSTQL 339 (560)
Q Consensus 284 Sg~~I~vtLWg~~a~~~~~~l~~~~~~~~~~VV~l~~~rV~~f~-G~-sLs~~~~S~i 339 (560)
+| .|+|...|.+..- ...+++=+-|....++.-. ++ .|-+...|-|
T Consensus 145 TG-~MeVvv~G~~~~i---------~CEeGDKLrL~cFeL~~~~~~~~qL~s~~HSfi 192 (204)
T 3rlo_A 145 TG-KMEVVVHGRLTTI---------NCEEGDKLKLTCFELAPKSGNTGELRSVIHSHI 192 (204)
T ss_dssp TE-EEEEEECGGGGGC---------CCCTTCEEEEEEEEEECCTTTTCEEEEEEEEEE
T ss_pred CC-cEEEEEeccCccc---------ccCCCCeeEEEEEEEecccCCceeEEEecceeE
Confidence 99 7999999987542 3456777766666665432 33 5655545544
No 119
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=37.86 E-value=93 Score=27.65 Aligned_cols=72 Identities=8% Similarity=0.092 Sum_probs=36.3
Q ss_pred ceeEEEEEEEEecCceeEeeccCceeeEEEEEEec-----CCC-----cEEEEEEeCcchhhhhhhHHhhhccCCccEEE
Q 008606 248 SIVDVIGIVISVNPSVPILRKNGMETQRRILNLKD-----TSG-----RSVELTLWGDFCNKEGQKLQEMVDVGFFPVLS 317 (560)
Q Consensus 248 ~~VDVIGvV~~V~~~~~i~~k~G~~~~kr~i~L~D-----~Sg-----~~I~vtLWg~~a~~~~~~l~~~~~~~~~~VV~ 317 (560)
..|-++|.|..=-.++. +.+|..+.+-.|-... .+| .-+.|++||..|+...++| ..+.-|.
T Consensus 17 N~V~LiGrL~~DPelr~--t~~G~~va~f~lAv~~r~~~~~~Ge~~~t~~~~v~~wg~~Ae~~~~~l------~KG~~V~ 88 (153)
T 1z9f_A 17 NKIILIGRLVRDPEERY--TLSGTPVTTFTIAVDRVPRKNAPDDAQTTDFFRIVTFGRLAEFARTYL------TKGRLVL 88 (153)
T ss_dssp CCEEEEEEESSCCEEEE--CC--CEEEEEEEEEEC-----------CEEEEEEEEEHHHHHHHHHHC------CTTCEEE
T ss_pred eEEEEEEEECCCCEEEE--CCCCCEEEEEEEEEcCCccccCCCCEeeeEEEEEEEECHHHHHHHhhC------CCCCEEE
Confidence 35667888775333322 3356543322222221 122 2499999999988754443 3455555
Q ss_pred EE-EEEEecCC
Q 008606 318 VK-SGKVNDFS 327 (560)
Q Consensus 318 l~-~~rV~~f~ 327 (560)
|. ..+...|.
T Consensus 89 VeGrL~~~~~~ 99 (153)
T 1z9f_A 89 VEGEMRMRRWE 99 (153)
T ss_dssp EEEEEEEEC--
T ss_pred EEEEEEeceEE
Confidence 54 45666775
No 120
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=37.48 E-value=13 Score=28.82 Aligned_cols=27 Identities=19% Similarity=0.343 Sum_probs=21.1
Q ss_pred EeCCCCCcCccccCceeeecC--CeeecCcCCCcc
Q 008606 417 YTACPLMIGDRQCNKKVTQSG--NRWQCDRCNQEI 449 (560)
Q Consensus 417 Y~aC~~~~~~~~C~KKv~~~~--~~~~C~kC~~~~ 449 (560)
..+|| .|+..+..+. +...|..|+..+
T Consensus 8 iL~CP------~ck~~L~~~~~~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 8 ILACP------ICKGPLKLSADKTELISKGAGLAY 36 (69)
T ss_dssp TCCCT------TTCCCCEECTTSSEEEETTTTEEE
T ss_pred heeCC------CCCCcCeEeCCCCEEEcCCCCcEe
Confidence 35899 9999988654 478999998654
No 121
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=36.59 E-value=13 Score=28.80 Aligned_cols=27 Identities=15% Similarity=0.438 Sum_probs=21.4
Q ss_pred EeCCCCCcCccccCceeeecC--CeeecCcCCCcc
Q 008606 417 YTACPLMIGDRQCNKKVTQSG--NRWQCDRCNQEI 449 (560)
Q Consensus 417 Y~aC~~~~~~~~C~KKv~~~~--~~~~C~kC~~~~ 449 (560)
..+|| .|+..+..+. +...|..|+..+
T Consensus 8 iL~CP------~ck~~L~~~~~~~~LiC~~cg~~Y 36 (70)
T 2js4_A 8 ILVCP------VCKGRLEFQRAQAELVCNADRLAF 36 (70)
T ss_dssp CCBCT------TTCCBEEEETTTTEEEETTTTEEE
T ss_pred heECC------CCCCcCEEeCCCCEEEcCCCCcee
Confidence 46899 9999988654 388999998654
No 122
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=36.48 E-value=13 Score=28.70 Aligned_cols=27 Identities=7% Similarity=0.180 Sum_probs=21.3
Q ss_pred EeCCCCCcCccccCceeeecC--CeeecCcCCCcc
Q 008606 417 YTACPLMIGDRQCNKKVTQSG--NRWQCDRCNQEI 449 (560)
Q Consensus 417 Y~aC~~~~~~~~C~KKv~~~~--~~~~C~kC~~~~ 449 (560)
..+|| .|+..+.... +...|..|+..+
T Consensus 8 iL~CP------~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2jr6_A 8 ILVCP------VTKGRLEYHQDKQELWSRQAKLAY 36 (68)
T ss_dssp CCBCS------SSCCBCEEETTTTEEEETTTTEEE
T ss_pred heECC------CCCCcCeEeCCCCEEEcCCCCcEe
Confidence 46899 9999988654 488999998654
No 123
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=35.92 E-value=13 Score=28.66 Aligned_cols=29 Identities=14% Similarity=0.361 Sum_probs=22.5
Q ss_pred eEEeCCCCCcCccccCceeeecC--CeeecCcCCCcc
Q 008606 415 FCYTACPLMIGDRQCNKKVTQSG--NRWQCDRCNQEI 449 (560)
Q Consensus 415 ~~Y~aC~~~~~~~~C~KKv~~~~--~~~~C~kC~~~~ 449 (560)
.-..+|| .|+..+.... +...|..|+..+
T Consensus 6 L~iL~CP------~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2hf1_A 6 LEILVCP------LCKGPLVFDKSKDELICKGDRLAF 36 (68)
T ss_dssp EEECBCT------TTCCBCEEETTTTEEEETTTTEEE
T ss_pred hhheECC------CCCCcCeEeCCCCEEEcCCCCcEe
Confidence 4467999 9999988654 488999998654
No 124
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=35.85 E-value=12 Score=32.55 Aligned_cols=28 Identities=32% Similarity=0.723 Sum_probs=24.0
Q ss_pred EeCCCCCcCccccCceeeecCC-eeecCcCCCccC
Q 008606 417 YTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEID 450 (560)
Q Consensus 417 Y~aC~~~~~~~~C~KKv~~~~~-~~~C~kC~~~~~ 450 (560)
.+.|| +|+.--+.+++ .|.|+.|..++.
T Consensus 27 lP~CP------~C~seytYeDg~l~vCPeC~hEW~ 55 (138)
T 2akl_A 27 LPPCP------QCNSEYTYEDGALLVCPECAHEWS 55 (138)
T ss_dssp SCCCT------TTCCCCCEECSSSEEETTTTEEEC
T ss_pred CCCCC------CCCCcceEecCCeEECCccccccC
Confidence 59999 99998887766 999999998763
No 125
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=34.94 E-value=1.3e+02 Score=27.14 Aligned_cols=73 Identities=12% Similarity=0.130 Sum_probs=40.3
Q ss_pred ceeEEEEEEEEecCceeEeeccCceeeEEEEEEe----cC-C-------CcEEEEEEeCcchhhhhhhHHhhhccCCccE
Q 008606 248 SIVDVIGIVISVNPSVPILRKNGMETQRRILNLK----DT-S-------GRSVELTLWGDFCNKEGQKLQEMVDVGFFPV 315 (560)
Q Consensus 248 ~~VDVIGvV~~V~~~~~i~~k~G~~~~kr~i~L~----D~-S-------g~~I~vtLWg~~a~~~~~~l~~~~~~~~~~V 315 (560)
..|-++|.|..--.++. +.+|+.+.+-.|-+. |. + -.-+.|++|++.|+...++| ..+..
T Consensus 5 N~V~LiG~L~~dPelr~--t~~G~~va~f~lAv~~~~~~~~~Ge~~d~~t~~~~v~~wg~~Ae~~~~~l------~KG~~ 76 (168)
T 3afp_A 5 TTITIVGNLTADPELRF--TSSGAAVVNFTVASTPRIYDRQSGEWKDGEALFLRCNIWREAAENVAESL------TRGAR 76 (168)
T ss_dssp CEEEEEEEESSSCCCEE--CTTSCEEEEEEEEECC--------CCCCCCCEEEEEEEEHHHHHHHHHHC------CTTCE
T ss_pred CEEEEEEEECCCCEEEE--CCCCCEEEEEEEEEccccccccCCcEecCCcEEEEEEEehHHHHHHHHhC------CCCCE
Confidence 35677888776444432 345654433333321 11 1 22599999999998754443 34566
Q ss_pred EEEE-EEEEecCCC
Q 008606 316 LSVK-SGKVNDFSG 328 (560)
Q Consensus 316 V~l~-~~rV~~f~G 328 (560)
|.|. ..+...|..
T Consensus 77 V~VeGrL~~~~~~d 90 (168)
T 3afp_A 77 VIVTGRLKQRSFET 90 (168)
T ss_dssp EEEEEEEEEEEEC-
T ss_pred EEEEEEEEeeeEEC
Confidence 6554 456666753
No 126
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=34.38 E-value=19 Score=26.62 Aligned_cols=27 Identities=22% Similarity=0.650 Sum_probs=22.6
Q ss_pred EeCCCCCcCccccCceeeecCCeeecC--cCCCcc
Q 008606 417 YTACPLMIGDRQCNKKVTQSGNRWQCD--RCNQEI 449 (560)
Q Consensus 417 Y~aC~~~~~~~~C~KKv~~~~~~~~C~--kC~~~~ 449 (560)
..+|| .|+..+..+.+...|. .|+..+
T Consensus 10 iL~CP------~c~~~L~~~~~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 10 ILACP------ACHAPLEERDAELICTGQDCGLAY 38 (56)
T ss_dssp SCCCS------SSCSCEEEETTEEEECSSSCCCEE
T ss_pred heeCC------CCCCcceecCCEEEcCCcCCCcEE
Confidence 45899 9999998877889999 898654
No 127
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=33.67 E-value=21 Score=26.33 Aligned_cols=25 Identities=32% Similarity=0.921 Sum_probs=18.6
Q ss_pred eCCCCCcCccccCceee--ecCCeeecCcCCCc
Q 008606 418 TACPLMIGDRQCNKKVT--QSGNRWQCDRCNQE 448 (560)
Q Consensus 418 ~aC~~~~~~~~C~KKv~--~~~~~~~C~kC~~~ 448 (560)
.-|| .|+-.+. ...+.+.|.+|+-+
T Consensus 19 ~fCP------kCG~~~~ma~~~dr~~C~kCgyt 45 (55)
T 2k4x_A 19 RFCP------RCGPGVFLAEHADRYSCGRCGYT 45 (55)
T ss_dssp CCCT------TTTTTCCCEECSSEEECTTTCCC
T ss_pred ccCc------CCCCceeEeccCCEEECCCCCCE
Confidence 4689 8987443 55569999999864
No 128
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=31.98 E-value=41 Score=26.71 Aligned_cols=31 Identities=19% Similarity=0.338 Sum_probs=25.3
Q ss_pred EEEEeCCCeEEEEEehhhhhhhcCCCHHHHHHh
Q 008606 460 AQIQDQTGLTWVTAFQESGEEILGCPAKELYML 492 (560)
Q Consensus 460 ~~i~D~Tgs~~~~~Fd~~ae~llG~sA~el~~~ 492 (560)
+.+.|..|. ++.++..+++|+|.+++|+...
T Consensus 6 i~~~d~~g~--i~~~N~a~~~l~G~~~~el~G~ 36 (119)
T 2vv6_A 6 MIVIDGHGI--IQLFSTAAERLFGWSELEAIGQ 36 (119)
T ss_dssp EEEEETTSB--EEEECHHHHHHHCCCHHHHTTS
T ss_pred EEEECCCCe--EEEEhHHHHHHhCCCHHHHcCC
Confidence 456788886 5678999999999999998753
No 129
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=31.85 E-value=1.8e+02 Score=26.25 Aligned_cols=72 Identities=13% Similarity=0.048 Sum_probs=38.2
Q ss_pred eeEEEEEEEEecCceeEeeccCceeeEEEEEEe----cC-CC------cEEEEEEeCc-chhhhhhhHHhhhccCCccEE
Q 008606 249 IVDVIGIVISVNPSVPILRKNGMETQRRILNLK----DT-SG------RSVELTLWGD-FCNKEGQKLQEMVDVGFFPVL 316 (560)
Q Consensus 249 ~VDVIGvV~~V~~~~~i~~k~G~~~~kr~i~L~----D~-Sg------~~I~vtLWg~-~a~~~~~~l~~~~~~~~~~VV 316 (560)
.|-++|.|..--.++. +.+|+.+.+-.|-.. |. +| .-+.|++||+ .|+...++| ..+..|
T Consensus 25 kV~LiGrL~~DPelr~--t~~G~~v~~FslAv~~~~~~~~~Ge~~~~t~~i~vv~wg~~lAe~~~~~l------~KG~~V 96 (169)
T 3lgj_A 25 KVMLIGYLGDDPESKT--MTSGAEVVNFRMATFESYMNKNTHQKVEKTEWHSVVVFNPHFAKIALQYL------HKGSKV 96 (169)
T ss_dssp EEEEEEEESSCCEEEE--CTTSCEEEEEEEEEEC------------CEEEEEEEECCHHHHHHHHHHC------CTTCEE
T ss_pred EEEEEEEECCCCeEEE--CCCCCEEEEEEEEEcCceecccCCccccccEEEEEEEeCHHHHHHHHHhC------CCCCEE
Confidence 5677777776333332 345654433333222 21 12 2589999999 887754443 356666
Q ss_pred EEE-EEEEecCCC
Q 008606 317 SVK-SGKVNDFSG 328 (560)
Q Consensus 317 ~l~-~~rV~~f~G 328 (560)
.|. ..+...|.+
T Consensus 97 ~VeGrL~~r~~~d 109 (169)
T 3lgj_A 97 YIEGKLQTRKWQD 109 (169)
T ss_dssp EEEEEEEEECC--
T ss_pred EEEEEEEEEEEEC
Confidence 554 446667753
No 130
>4gs3_A Single-stranded DNA-binding protein; primosome, oligonucleotide/oligosaccharide binding domain, D binding protein; 1.09A {Thermoanaerobacter tengcongensis}
Probab=31.79 E-value=50 Score=27.70 Aligned_cols=64 Identities=20% Similarity=0.260 Sum_probs=48.9
Q ss_pred CceEEEEEEEEecccceeccCCCCCcEEEEEEE-e---CCCCeEEEEEcchhHHHHHhhcccCcEEEEeeeEEe
Q 008606 126 GRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL-D---SDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLK 195 (560)
Q Consensus 126 ~~w~Ik~RV~~k~~ir~~~n~~g~gkvf~~~L~-D---~~g~~I~at~~~~~~~kf~~~l~eG~vY~Is~~~V~ 195 (560)
++-.+.||+++--++|...+ |. .+.+|.|. + .+.+.|.+++|+.+|+... +..|+-+.+.+ +++
T Consensus 12 N~V~LiGrl~~dpelr~t~~--G~-~v~~f~lAV~R~~~~~Dfi~ivvw~klAe~~~--~~kG~~v~v~G-~lr 79 (107)
T 4gs3_A 12 NTVTLVGKVFTPLEFSHELY--GE-KFFNFILEVPRLSETKDYLPITISNRLFEGMN--LEVGTRVKIEG-QLR 79 (107)
T ss_dssp SCEEEEEEECSCCEEEEEET--TE-EEEEEEEEEECTTSCEEEEEEEEEGGGSTTCC--CCTTCEEEEEE-EEE
T ss_pred CEEEEEEEECCCceEEEecC--Cc-EEEEEEEEeCCCCCCCcEEEEEEEhHHhhHHh--hcCCCEEEEEE-EEE
Confidence 56789999999999987543 44 57788775 2 2578999999999988653 45899988887 554
No 131
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=30.72 E-value=18 Score=27.81 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=21.2
Q ss_pred EeCCCCCcCccccCceeeecC--CeeecCcCCCcc
Q 008606 417 YTACPLMIGDRQCNKKVTQSG--NRWQCDRCNQEI 449 (560)
Q Consensus 417 Y~aC~~~~~~~~C~KKv~~~~--~~~~C~kC~~~~ 449 (560)
..+|| .|+..+..+. +...|+.|+..+
T Consensus 10 iL~CP------~ck~~L~~~~~~g~LvC~~c~~~Y 38 (67)
T 2jny_A 10 VLACP------KDKGPLRYLESEQLLVNERLNLAY 38 (67)
T ss_dssp CCBCT------TTCCBCEEETTTTEEEETTTTEEE
T ss_pred HhCCC------CCCCcCeEeCCCCEEEcCCCCccc
Confidence 46899 9999988653 388999998654
No 132
>2oq0_A Gamma-interferon-inducible protein IFI-16; OB folds, beta-barrels, structural genomics, PSI-2, protein initiative; 2.00A {Homo sapiens} SCOP: b.40.16.1 b.40.16.1
Probab=30.60 E-value=3.3e+02 Score=25.29 Aligned_cols=176 Identities=12% Similarity=0.089 Sum_probs=113.0
Q ss_pred EEEEEEEEecccceeccCC-CCCcEEEEEEEeCCCCeEEEEEcchhHHHHHhhcccCcEEEEeeeEEecCCCccccCCCe
Q 008606 129 AIKARVTAKGDLRRYNNAR-GDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEIIEVGRVYLISKGSLKPAQKNFNHLKNE 207 (560)
Q Consensus 129 ~Ik~RV~~k~~ir~~~n~~-g~gkvf~~~L~D~~g~~I~at~~~~~~~kf~~~l~eG~vY~Is~~~V~~a~~~y~~~~~~ 207 (560)
-..|-|+.-.++..|.... |...+|+-+..- +..--++.+|+... .+.+...+++.||++.= +.
T Consensus 17 p~~VmVLkat~pF~ye~~E~~k~~MFHATVAT-etqfF~VKVfn~~L---keKF~~k~iI~ISdY~~-----------~~ 81 (206)
T 2oq0_A 17 PVIVKVLSTTKPFEYETPEMEKKIMFHATVAT-QTQFFHVKVLNTSL---KEKFNGKKIIIISDYLE-----------YD 81 (206)
T ss_dssp CEEEEEEEECCCEEEECCC--EEEEEEEEEEC-SSCEEEEEECCGGG---GGGGSSSSEEEEESBEE-----------ET
T ss_pred ceEEEEEecccceEEechhcccceeEEEEEee-cceeEEEEEeechh---hhhcccCceEEEEeecc-----------cc
Confidence 3567788888888887654 333489999988 78899999999654 44778899999998742 22
Q ss_pred eEEEEcccceEEeccC-CCCCCCccc----ccccCccchhcccCCceeEEEEEEEEecCceeEeeccCceeeEEEEEEec
Q 008606 208 WEIFLEATSTVDLCTE-EDDSIPKQQ----FSFRHISEIESAENNSIVDVIGIVISVNPSVPILRKNGMETQRRILNLKD 282 (560)
Q Consensus 208 yeI~f~~~T~I~~~~d-~~~~iP~~~----f~f~~i~dI~~~~~~~~VDVIGvV~~V~~~~~i~~k~G~~~~kr~i~L~D 282 (560)
--|..++.|.|.++.. ....||... -.--+|++|.....+.+|.=+=.|.... . .+ ......|.|
T Consensus 82 g~lEv~~~ssVse~~~~q~~evp~~ii~~A~~TpKI~~L~~qa~Gt~V~GlF~v~kk~------v--~~--~~~~yeI~D 151 (206)
T 2oq0_A 82 SLLEVNEESTVSEAGPNQTFEVPNKIINRAKETLKIDILHKQASGNIVYGVFMLHKKT------V--NQ--KTTIYEIQD 151 (206)
T ss_dssp TEEEECTTCEEEECCGGGCCCCCHHHHHHHTCCCCHHHHTTSCTTCEEEEEEEEEEEE------E--CS--SEEEEEEEE
T ss_pred ceeeeeccceEEeccCCcceeccHHHHhhcccCccchhhhccCCccEEceEEEEEEEe------e--cc--ceEEEEEcc
Confidence 3577788888988753 223466432 1223577776656677665333332211 0 11 234567999
Q ss_pred CCCcEEEEEEeCcchhhhhhhHHhhhccCCccEEEEEEEEEecCCCc-eecccCCeEE
Q 008606 283 TSGRSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKSGKVNDFSGK-SIGTIPSTQL 339 (560)
Q Consensus 283 ~Sg~~I~vtLWg~~a~~~~~~l~~~~~~~~~~VV~l~~~rV~~f~G~-sLs~~~~S~i 339 (560)
.+| .++|...|.... ....+++.+-+....++.-.++ .|.+...|-|
T Consensus 152 ~tG-~MeVvv~G~~~~---------i~CeeGdkLrL~cF~L~~~~~~~~L~S~~hSfi 199 (206)
T 2oq0_A 152 DRG-KMDVVGTGQCHN---------IPCEEGDKLQLFCFRLRKKNQMSKLISEMHSFI 199 (206)
T ss_dssp TTE-EEEEEEEGGGSS---------CCCCTTCEEEEEEEEEEEETTEEEEECCTTCEE
T ss_pred CCC-cEEEEEeCcccc---------cccCCCCEEEEEEEEeeccCCcceEEEecceeE
Confidence 999 899999997643 2345678877766666553444 4655545533
No 133
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae}
Probab=30.58 E-value=1.1e+02 Score=28.30 Aligned_cols=71 Identities=10% Similarity=0.071 Sum_probs=37.4
Q ss_pred eeEEEEEEEEecCceeEeeccCceeeEEEEEE----ecC-CC------cEEEEEEeCc-chhhhhhhHHhhhccCCccEE
Q 008606 249 IVDVIGIVISVNPSVPILRKNGMETQRRILNL----KDT-SG------RSVELTLWGD-FCNKEGQKLQEMVDVGFFPVL 316 (560)
Q Consensus 249 ~VDVIGvV~~V~~~~~i~~k~G~~~~kr~i~L----~D~-Sg------~~I~vtLWg~-~a~~~~~~l~~~~~~~~~~VV 316 (560)
.|-++|.|..--+++. +.+|+.+.+-.|-. .|. +| .-+.|++|++ .|+...++| ..+..|
T Consensus 28 kV~LiGrLg~DPElR~--t~~G~~Va~FsLAvnr~~kd~~~Ge~~e~Tdwi~Vvawgk~lAe~~~~yL------~KGs~V 99 (193)
T 3pgz_A 28 KVILIGNLGADPEIRR--LNSGDQVANLRIATSESWRDRNTNERKERTEWHNIVIFNENLVKVVEQYL------KKGSKI 99 (193)
T ss_dssp EEEEEEEESSCCEEEE--CTTSCEEEEEEEEEEEEECCC-----EEEEEEEEEEECCHHHHHHHHHHC------CTTCEE
T ss_pred EEEEEEEECCCCeEEE--CCCCCEEEEEEEEEcCceeccCCCceeeeeEEEEEEEECHHHHHHHHhhc------CCCCEE
Confidence 4777888876333332 34565443322222 222 23 2489999997 776643332 345655
Q ss_pred EEE-EEEEecCC
Q 008606 317 SVK-SGKVNDFS 327 (560)
Q Consensus 317 ~l~-~~rV~~f~ 327 (560)
.|. ..+...|.
T Consensus 100 ~VeGrL~trswe 111 (193)
T 3pgz_A 100 YIEGQLQTRKWQ 111 (193)
T ss_dssp EEEEEEEEEEEE
T ss_pred EEEEEEEEEEeE
Confidence 554 44556664
No 134
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=29.71 E-value=1.4e+02 Score=26.00 Aligned_cols=71 Identities=14% Similarity=0.125 Sum_probs=38.3
Q ss_pred eeEEEEEEEEecCceeEeeccCceeeEEEEEEe----cC-CC------cEEEEEEeCcchhhhhhhHHhhhccCCccEEE
Q 008606 249 IVDVIGIVISVNPSVPILRKNGMETQRRILNLK----DT-SG------RSVELTLWGDFCNKEGQKLQEMVDVGFFPVLS 317 (560)
Q Consensus 249 ~VDVIGvV~~V~~~~~i~~k~G~~~~kr~i~L~----D~-Sg------~~I~vtLWg~~a~~~~~~l~~~~~~~~~~VV~ 317 (560)
.|-++|.|..--.++. +.+|..+.+-.|-.. |. +| .-+.|++|++.|+...++| ..+..|.
T Consensus 7 ~v~L~GrL~~dPelr~--t~~G~~v~~f~lA~~~~~~~~~~Ge~~~~t~~~~v~~wg~~Ae~~~~~l------~KG~~V~ 78 (145)
T 1qvc_A 7 KVILVGNLGQDPEVRY--MPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYL------RKGSQVY 78 (145)
T ss_dssp EEEEEEEESSCCEEEC--CSSSCCEEEEEEEECCCCSCCSSSSCCCCCEEEEEEEETHHHHHHHHHC------CTTCEEE
T ss_pred EEEEEEEeCCCCEEEE--CCCCCEEEEEEEEEcCCcccccCCcEecccEEEEEEEehHHHHHHHHhc------CCCCEEE
Confidence 4667777765333322 235654333233222 11 12 3699999999988754433 3456555
Q ss_pred EE-EEEEecCC
Q 008606 318 VK-SGKVNDFS 327 (560)
Q Consensus 318 l~-~~rV~~f~ 327 (560)
|. ..+...|.
T Consensus 79 V~G~L~~~~~~ 89 (145)
T 1qvc_A 79 IEGQLRTRKWT 89 (145)
T ss_dssp EEEEEEEEEEC
T ss_pred EEEEEEeeEEE
Confidence 54 44565665
No 135
>3stb_C RNA-editing complex protein MP42; editosome, nanobody, single domain antibody, VH krepa3, krepa6, RNA binding protein-immune system complex; 2.50A {Trypanosoma brucei}
Probab=29.42 E-value=1.3e+02 Score=26.79 Aligned_cols=62 Identities=19% Similarity=0.291 Sum_probs=44.4
Q ss_pred CCceEEEEEEEEecccceeccCCCCCcEEEEEEE-eCC--------CCeEEEEEcc-hhHHHHHhhcccCcEEEEee
Q 008606 125 QGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL-DSD--------GGEIRVTCFN-AVVDRFYEIIEVGRVYLISK 191 (560)
Q Consensus 125 ~~~w~Ik~RV~~k~~ir~~~n~~g~gkvf~~~L~-D~~--------g~~I~at~~~-~~~~kf~~~l~eG~vY~Is~ 191 (560)
.++..+.|||+.--. | |.. ...+..|.|+ |.+ .+.+.+.||+ .+++...+.+++|+.+.|.+
T Consensus 44 vN~VvLmGRvtdpq~-r-y~~---~~~Va~FtLAV~~~~~r~ge~~tdf~~V~vfGg~lAE~i~~ylkkG~rVlVeG 115 (148)
T 3stb_C 44 VNHCVMLGVVQNIQE-G-FVF---EDKVLQFTLITDFEGPSPGDPDKDFHTVRVFDSDYSSRVKEQLRDGEWFLVTG 115 (148)
T ss_dssp SEEEEEEEEEEEEEE-E-EET---TEEEEEEEEEEECSSCCTTSCSEEEEEEEECSHHHHHHHHHHCCTTCEEEEEE
T ss_pred cceEEEEEEecCccc-c-ccC---CCcEEEEEEEEecCCCCCCCCccceEEEEEECChHHHHHHHHhcCCCEEEEEE
Confidence 467899999984432 3 432 2267777754 322 2349999996 88999999999999998865
No 136
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=29.38 E-value=19 Score=35.48 Aligned_cols=24 Identities=21% Similarity=0.805 Sum_probs=18.8
Q ss_pred eCCCCCcCccccCceeeec--CC--eeecCcCCC
Q 008606 418 TACPLMIGDRQCNKKVTQS--GN--RWQCDRCNQ 447 (560)
Q Consensus 418 ~aC~~~~~~~~C~KKv~~~--~~--~~~C~kC~~ 447 (560)
..|| .|+..+... ++ .|+|+.|++
T Consensus 246 ~pC~------~CG~~I~~~~~~gR~t~~CP~CQ~ 273 (273)
T 3u6p_A 246 NPCK------RCGTPIEKTVVAGRGTHYCPRCQR 273 (273)
T ss_dssp SBCT------TTCCBCEEEEETTEEEEECTTTCC
T ss_pred CCCC------CCCCeEEEEEECCCCeEECCCCCC
Confidence 5799 899988652 23 999999984
No 137
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3
Probab=29.33 E-value=74 Score=29.08 Aligned_cols=71 Identities=14% Similarity=0.135 Sum_probs=38.7
Q ss_pred eeEEEEEEEEecCceeEeeccCceeeEEEEEE----ecCC-C------cEEEEEEeCcchhhhhhhHHhhhccCCccEEE
Q 008606 249 IVDVIGIVISVNPSVPILRKNGMETQRRILNL----KDTS-G------RSVELTLWGDFCNKEGQKLQEMVDVGFFPVLS 317 (560)
Q Consensus 249 ~VDVIGvV~~V~~~~~i~~k~G~~~~kr~i~L----~D~S-g------~~I~vtLWg~~a~~~~~~l~~~~~~~~~~VV~ 317 (560)
.|-++|.|..--.++. +.+|..+.+..|-+ .|.. | .-+.|++||+.|+...++| ..+..|.
T Consensus 8 ~V~LiGrL~~dPelr~--t~~G~~v~~f~LAv~~~~~d~~~Ge~~~~t~~i~vv~wg~~Ae~~~~~l------~KG~~V~ 79 (178)
T 1eqq_A 8 KVILVGNLGQDPEVRY--MPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYL------RKGSQVY 79 (178)
T ss_dssp EEEEEEEESSSCCCCE--ETTTEECCCCEEEEEECCCCSSSSSCCCEEEEEEEEECHHHHHHHHHHC------CTTCEEE
T ss_pred EEEEEEEECCCCEEEE--CCCCCEEEEEEEEEcCCeecCCCCceecccEEEEEEEccHHHHHHHHhc------CCCCEEE
Confidence 4667777776444433 33555432222222 2221 3 2589999999988754433 3566666
Q ss_pred EE-EEEEecCC
Q 008606 318 VK-SGKVNDFS 327 (560)
Q Consensus 318 l~-~~rV~~f~ 327 (560)
|. ..+...|.
T Consensus 80 VeGrL~~r~~~ 90 (178)
T 1eqq_A 80 IEGQLRTRKWT 90 (178)
T ss_dssp ECCEEEEEEEE
T ss_pred EEEEEEeeeEE
Confidence 54 33555554
No 138
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=29.20 E-value=21 Score=34.98 Aligned_cols=27 Identities=26% Similarity=0.754 Sum_probs=20.8
Q ss_pred eEE----eCCCCCcCccccCceeeec--CC--eeecCcCCC
Q 008606 415 FCY----TACPLMIGDRQCNKKVTQS--GN--RWQCDRCNQ 447 (560)
Q Consensus 415 ~~Y----~aC~~~~~~~~C~KKv~~~--~~--~~~C~kC~~ 447 (560)
|.| ..|+ .|+..+... ++ .|+|+.|++
T Consensus 229 ~VygR~g~pC~------~CG~~I~~~~~~gR~t~~CP~CQ~ 263 (266)
T 1ee8_A 229 AVYGREGLPCP------ACGRPVERRVVAGRGTHFCPTCQG 263 (266)
T ss_dssp SSTTCTTSBCT------TTCCBCEEEESSSCEEEECTTTTT
T ss_pred EEcccCCCCCC------CCCCEeeEEEECCCceEECCCCCC
Confidence 556 6799 999887653 22 999999986
No 139
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=28.42 E-value=20 Score=35.19 Aligned_cols=27 Identities=22% Similarity=0.674 Sum_probs=20.7
Q ss_pred eEE----eCCCCCcCccccCceeeec--CC--eeecCcCCC
Q 008606 415 FCY----TACPLMIGDRQCNKKVTQS--GN--RWQCDRCNQ 447 (560)
Q Consensus 415 ~~Y----~aC~~~~~~~~C~KKv~~~--~~--~~~C~kC~~ 447 (560)
|.| ..|+ .|+..+... ++ .|+|+.|++
T Consensus 236 ~VygR~G~pC~------~CG~~I~~~~~~gR~t~~CP~CQ~ 270 (271)
T 2xzf_A 236 QVYGKTGEKCS------RCGAEIQKIKVAGRGTHFCPVCQQ 270 (271)
T ss_dssp SSTTCTTSBCT------TTCCBCEEEEETTEEEEECTTTSC
T ss_pred EEccCCCCCCC------CCCCEeeEEEECCCceEECCCCCC
Confidence 566 6699 999887653 22 999999985
No 140
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=28.25 E-value=20 Score=35.13 Aligned_cols=27 Identities=19% Similarity=0.736 Sum_probs=20.6
Q ss_pred eEE----eCCCCCcCccccCceeeec--CC--eeecCcCCC
Q 008606 415 FCY----TACPLMIGDRQCNKKVTQS--GN--RWQCDRCNQ 447 (560)
Q Consensus 415 ~~Y----~aC~~~~~~~~C~KKv~~~--~~--~~~C~kC~~ 447 (560)
|.| ..|+ .|+..+... ++ .|+|+.|++
T Consensus 234 ~VygR~g~pC~------~CG~~I~~~~~~gR~t~~CP~CQ~ 268 (268)
T 1k82_A 234 QVYGRKGEPCR------VCGTPIVATKHAQRATFYCRQCQK 268 (268)
T ss_dssp SSTTCTTSBCT------TTCCBCEEEEETTEEEEECTTTCC
T ss_pred EEcccCCCCCC------CCCCEeeEEEECCCceEECCCCCC
Confidence 567 6699 999887653 22 999999974
No 141
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=27.99 E-value=16 Score=26.39 Aligned_cols=8 Identities=50% Similarity=1.726 Sum_probs=3.7
Q ss_pred eeecCcCC
Q 008606 439 RWQCDRCN 446 (560)
Q Consensus 439 ~~~C~kC~ 446 (560)
.|.|.+|+
T Consensus 11 ~WkC~~C~ 18 (53)
T 2cr8_A 11 EWQCTECK 18 (53)
T ss_dssp CEECSSSC
T ss_pred eeeccccc
Confidence 34444444
No 142
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=27.93 E-value=75 Score=28.55 Aligned_cols=46 Identities=17% Similarity=0.366 Sum_probs=30.6
Q ss_pred eCCCCCcCccccCceeeec---C---CeeecCcCCCccCCceeEEEEEEEEEeCCCeEEE
Q 008606 418 TACPLMIGDRQCNKKVTQS---G---NRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWV 471 (560)
Q Consensus 418 ~aC~~~~~~~~C~KKv~~~---~---~~~~C~kC~~~~~~~~~rY~l~~~i~D~Tgs~~~ 471 (560)
.=|| .|+.++... + ..+.|..|+... -..++..+.+.|.+ .|.+.+
T Consensus 4 ~~C~------~CG~~~~~~~~~G~~~~~~~~~~~~~~~-~~~~~~~v~~ii~~-~~~vLL 55 (189)
T 3cng_A 4 KFCS------QCGGEVILRIPEGDTLPRYICPKCHTIH-YQNPKVIVGCIPEW-ENKVLL 55 (189)
T ss_dssp CBCT------TTCCBCEEECCTTCSSCEEEETTTTEEE-CCCCEEEEEEEEEE-TTEEEE
T ss_pred ccCc------hhCCccccccccCCCCcceECCCCCCcc-CCCCceEEEEEEEe-CCEEEE
Confidence 3499 999998642 2 278999999543 24556677777776 555443
No 143
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=27.90 E-value=21 Score=34.91 Aligned_cols=23 Identities=17% Similarity=0.745 Sum_probs=17.8
Q ss_pred CCCCCcCccccCceeeec--CC--eeecCcCCC
Q 008606 419 ACPLMIGDRQCNKKVTQS--GN--RWQCDRCNQ 447 (560)
Q Consensus 419 aC~~~~~~~~C~KKv~~~--~~--~~~C~kC~~ 447 (560)
.|+ .|+..+... ++ .|+|+.|++
T Consensus 236 pC~------~CG~~I~~~~~~gR~t~~CP~CQ~ 262 (262)
T 1k3x_A 236 PCE------RCGSIIEKTTLSSRPFYWCPGCQH 262 (262)
T ss_dssp BCT------TTCCBCEEEEETTEEEEECTTTCC
T ss_pred CCC------CCCCEeEEEEECCCCeEECCCCCC
Confidence 599 999887643 23 999999974
No 144
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=26.55 E-value=16 Score=27.85 Aligned_cols=23 Identities=35% Similarity=0.872 Sum_probs=17.8
Q ss_pred eCCCCCcCccccCceeeecCCeeecCcCCCcc
Q 008606 418 TACPLMIGDRQCNKKVTQSGNRWQCDRCNQEI 449 (560)
Q Consensus 418 ~aC~~~~~~~~C~KKv~~~~~~~~C~kC~~~~ 449 (560)
..|. .|+|||... .+.| +|+..+
T Consensus 16 ~rC~------~C~kkvgl~--~f~C-rCg~~F 38 (64)
T 1wg2_A 16 NRCF------SCNKKVGVM--GFKC-KCGSTF 38 (64)
T ss_dssp CSCT------TTCCCCTTS--CEEC-TTSCEE
T ss_pred CcCh------hhCCccccc--CeEe-ecCCEe
Confidence 4688 899998754 4889 788765
No 145
>3k7u_C MP18 RNA editing complex protein; OB-fold, RNA-editing proteins, kinetoplastids, system, RNA binding protein; 2.10A {Trypanosoma brucei} PDB: 3k80_D 3stb_D
Probab=26.24 E-value=3.3e+02 Score=23.88 Aligned_cols=71 Identities=13% Similarity=0.115 Sum_probs=40.7
Q ss_pred eeEEEEEEEEecCceeEeeccCceeeEEEEEEe----cCCC-------cEEEEEEeCcc-hhhhhhhHHhhhccCCccEE
Q 008606 249 IVDVIGIVISVNPSVPILRKNGMETQRRILNLK----DTSG-------RSVELTLWGDF-CNKEGQKLQEMVDVGFFPVL 316 (560)
Q Consensus 249 ~VDVIGvV~~V~~~~~i~~k~G~~~~kr~i~L~----D~Sg-------~~I~vtLWg~~-a~~~~~~l~~~~~~~~~~VV 316 (560)
.|-++|.|..--. . . + +|+.+.+-.|-.- |.+| .-+.|++||+. |+...++| ..+..|
T Consensus 8 kV~LiGrLg~DPe-r-~-t-~G~~va~FslAv~~~~~~~~Ge~~~~~t~w~~vv~wgk~lAe~~~~yl------~KG~~V 77 (148)
T 3k7u_C 8 SVTLVGVVHDIQS-G-F-V-YEDAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAEVKQKV------KEGNVV 77 (148)
T ss_dssp CEEEEEEEEEEEE-E-E-S-SSSEEEEEEEEEECC-----------CEEEEEEEEESHHHHHHHHHHC------CTTCEE
T ss_pred EEEEEEEeccCCE-e-e-e-CCcEEEEEEEEECCceecCCCCEEccccEEEEEEEECcHHHHHHHhhC------CCCCEE
Confidence 5778899886543 3 2 2 5665433333332 2112 36999999997 87754443 345555
Q ss_pred EEE-EEEEecCCCc
Q 008606 317 SVK-SGKVNDFSGK 329 (560)
Q Consensus 317 ~l~-~~rV~~f~G~ 329 (560)
.|. ..+...|..+
T Consensus 78 ~VeGrL~~r~~~dk 91 (148)
T 3k7u_C 78 CVNGRLRLSPQLEP 91 (148)
T ss_dssp EEEEEEEECCCSCC
T ss_pred EEEEEEEeeeeECC
Confidence 554 5567778543
No 146
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=26.08 E-value=16 Score=27.88 Aligned_cols=23 Identities=30% Similarity=0.876 Sum_probs=17.7
Q ss_pred eCCCCCcCccccCceeeecCCeeecCcCCCcc
Q 008606 418 TACPLMIGDRQCNKKVTQSGNRWQCDRCNQEI 449 (560)
Q Consensus 418 ~aC~~~~~~~~C~KKv~~~~~~~~C~kC~~~~ 449 (560)
..|. .|+|||... .+.| +|+..+
T Consensus 16 ~rC~------~C~kkvgl~--~f~C-rCg~~F 38 (64)
T 1wfh_A 16 NRCT------VCRKRVGLT--GFMC-RCGTTF 38 (64)
T ss_dssp CCCT------TTCCCCCTT--CEEC-SSSCEE
T ss_pred CcCh------hhCCccCcc--CEEe-ecCCEe
Confidence 4688 899998765 4888 688765
No 147
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=26.06 E-value=16 Score=28.71 Aligned_cols=23 Identities=43% Similarity=0.993 Sum_probs=18.2
Q ss_pred eCCCCCcCccccCceeeecCCeeecCcCCCcc
Q 008606 418 TACPLMIGDRQCNKKVTQSGNRWQCDRCNQEI 449 (560)
Q Consensus 418 ~aC~~~~~~~~C~KKv~~~~~~~~C~kC~~~~ 449 (560)
..|. .|+|||... .+.| +|+..+
T Consensus 26 ~RC~------~C~kkvgL~--~f~C-rCg~~F 48 (74)
T 1wfp_A 26 TRCL------SCNKKVGVT--GFKC-RCGSTF 48 (74)
T ss_dssp CBCS------SSCCBCTTT--CEEC-TTSCEE
T ss_pred ccch------hhcCccccc--ceEe-ccCCEe
Confidence 4688 899998776 4889 788765
No 148
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=25.92 E-value=32 Score=34.12 Aligned_cols=25 Identities=32% Similarity=0.834 Sum_probs=19.0
Q ss_pred CCCCCcCccccCceeee--cC--C--eeecCcCCCcc
Q 008606 419 ACPLMIGDRQCNKKVTQ--SG--N--RWQCDRCNQEI 449 (560)
Q Consensus 419 aC~~~~~~~~C~KKv~~--~~--~--~~~C~kC~~~~ 449 (560)
.|| .|+..+.. -+ + +|+|+.|++..
T Consensus 253 pC~------~CGt~I~~~~~g~~gRsTyfCp~~~~~~ 283 (287)
T 3w0f_A 253 NCD------QCHSKITVCRFGENSRMTYFCPHCQKHH 283 (287)
T ss_dssp BCT------TTCCBCEEECSSTTCCCEEECTTTSCC-
T ss_pred CCC------CCCCEEEEEEecCCCCCEEECCCccccc
Confidence 799 89987764 22 3 99999999853
No 149
>4dka_C RNA-editing complex protein MP81; krepa1, VHH, single domain antibody, protein binding, RNA BI protein-immune system complex; 1.97A {Trypanosoma brucei} PDB: 4dk3_C 4dk6_C
Probab=25.91 E-value=2.1e+02 Score=23.81 Aligned_cols=61 Identities=13% Similarity=0.219 Sum_probs=38.4
Q ss_pred CceEEEEEEEEecccceeccCCCCCcEEEEEEE-----eCCCCeEEEEEcchhH--HHHHhhcccCcEEEEee
Q 008606 126 GRWAIKARVTAKGDLRRYNNARGDGKVFSFDLL-----DSDGGEIRVTCFNAVV--DRFYEIIEVGRVYLISK 191 (560)
Q Consensus 126 ~~w~Ik~RV~~k~~ir~~~n~~g~gkvf~~~L~-----D~~g~~I~at~~~~~~--~kf~~~l~eG~vY~Is~ 191 (560)
.+..|.+||..... .|- ++.+++-|+|. |.+-+.+-+-|+++.. +...+.|++|.++.+.+
T Consensus 4 sn~vlvG~V~DVQ~--Gfl---~~~~V~Qftl~~d~e~~~eke~~tVRC~Gd~~~~~~lk~~lk~g~~v~V~G 71 (105)
T 4dka_C 4 SNALMIGRIADVQH--GFL---GAMTVTQYVLEVDGGASGEKEFIVIRCMGDNFPASLLKDQVKLGSRVLVQG 71 (105)
T ss_dssp CEEEEEEEEEEEEE--EEE---TTEEEEEEEEEECC----CCEEEEEEEECC---------CCCTTCEEEEEE
T ss_pred cceEEEEEEEEeee--ccc---ccceEEEEEEEEeCCCCCcccEEEEEEcCccchHHHHHHHHhCCCEEEEEe
Confidence 46788899987543 232 23478888864 3345678888899866 77899999999998876
No 150
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=25.70 E-value=59 Score=26.21 Aligned_cols=31 Identities=13% Similarity=0.289 Sum_probs=25.2
Q ss_pred EEEEeCCCeEEEEEehhhhhhhcCCCHHHHHHh
Q 008606 460 AQIQDQTGLTWVTAFQESGEEILGCPAKELYML 492 (560)
Q Consensus 460 ~~i~D~Tgs~~~~~Fd~~ae~llG~sA~el~~~ 492 (560)
+.+.|..|. ++.++..+++|+|.+++|+...
T Consensus 29 i~~~d~~g~--i~~~N~a~~~l~Gy~~~eliG~ 59 (130)
T 1d06_A 29 TVVSATDGT--IVSFNAAAVRQFGYAEEEVIGQ 59 (130)
T ss_dssp EEEEETTSB--EEEECHHHHHHHCCCHHHHTTS
T ss_pred EEEECCCCe--EEEEcHHHHHHHCCCHHHHcCC
Confidence 456788886 4678999999999999998753
No 151
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=24.78 E-value=58 Score=29.73 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=21.9
Q ss_pred cEEEEEEEeCCCCeEEEEEcchhHHHH
Q 008606 151 KVFSFDLLDSDGGEIRVTCFNAVVDRF 177 (560)
Q Consensus 151 kvf~~~L~D~~g~~I~at~~~~~~~kf 177 (560)
-.+++.|.| +.|.+.+++|++.++++
T Consensus 79 y~l~~~i~D-~Tg~~~~t~F~~~ae~i 104 (181)
T 1l1o_C 79 MILSVNIAD-FQENQWVTCFQESAEAI 104 (181)
T ss_dssp EEEEEEEEC-SSCEEEEEEEHHHHHHH
T ss_pred EEEEEEEEe-CCCCEEEEEEhHHHHHH
Confidence 468889999 78899999999987665
No 152
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=24.26 E-value=51 Score=30.08 Aligned_cols=29 Identities=17% Similarity=0.219 Sum_probs=24.9
Q ss_pred cEEEEEEEeCCCCeEEEEEcchhHHHHHhh
Q 008606 151 KVFSFDLLDSDGGEIRVTCFNAVVDRFYEI 180 (560)
Q Consensus 151 kvf~~~L~D~~g~~I~at~~~~~~~kf~~~ 180 (560)
-++++.+.| ++|.+.+++|++.++++-..
T Consensus 75 Yil~~~i~D-~TG~~wvt~F~e~ae~ilG~ 103 (172)
T 3u50_C 75 LMLRAFVQD-STGTIPVMIFDQQSSQLINQ 103 (172)
T ss_dssp ECEEEEEEE-TTEEEEEEECHHHHHHHHHH
T ss_pred EEEEEEEEe-CCCCEEEEEEhHHHHHHhCC
Confidence 458999999 78899999999988887665
No 153
>4gs3_A Single-stranded DNA-binding protein; primosome, oligonucleotide/oligosaccharide binding domain, D binding protein; 1.09A {Thermoanaerobacter tengcongensis}
Probab=23.60 E-value=3e+02 Score=22.84 Aligned_cols=63 Identities=13% Similarity=0.092 Sum_probs=37.3
Q ss_pred ceeEEEEEEEEecCceeEeeccCceeeEEEEEEecCCC--cEEEEEEeCcchhhhhhhHHhhhccCCccEEEEEE
Q 008606 248 SIVDVIGIVISVNPSVPILRKNGMETQRRILNLKDTSG--RSVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVKS 320 (560)
Q Consensus 248 ~~VDVIGvV~~V~~~~~i~~k~G~~~~kr~i~L~D~Sg--~~I~vtLWg~~a~~~~~~l~~~~~~~~~~VV~l~~ 320 (560)
.-|-++|.|+.=-+++ .+.+|.....-.|-+--.++ .-|.|++|+..|+... ...+.-|.+.+
T Consensus 12 N~V~LiGrl~~dpelr--~t~~G~~v~~f~lAV~R~~~~~Dfi~ivvw~klAe~~~--------~~kG~~v~v~G 76 (107)
T 4gs3_A 12 NTVTLVGKVFTPLEFS--HELYGEKFFNFILEVPRLSETKDYLPITISNRLFEGMN--------LEVGTRVKIEG 76 (107)
T ss_dssp SCEEEEEEECSCCEEE--EEETTEEEEEEEEEEECTTSCEEEEEEEEEGGGSTTCC--------CCTTCEEEEEE
T ss_pred CEEEEEEEECCCceEE--EecCCcEEEEEEEEeCCCCCCCcEEEEEEEhHHhhHHh--------hcCCCEEEEEE
Confidence 3578899988633333 23467665444444433333 3699999999987631 12456665554
No 154
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=23.31 E-value=28 Score=23.80 Aligned_cols=13 Identities=15% Similarity=0.756 Sum_probs=9.7
Q ss_pred CeeecCcCCCccC
Q 008606 438 NRWQCDRCNQEID 450 (560)
Q Consensus 438 ~~~~C~kC~~~~~ 450 (560)
+.+.|++|++.++
T Consensus 8 ~~~~C~~C~~~i~ 20 (39)
T 2i5o_A 8 DQVPCEKCGSLVP 20 (39)
T ss_dssp CEEECTTTCCEEE
T ss_pred CCcccccccCcCC
Confidence 4688888888653
No 155
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=23.27 E-value=3.1e+02 Score=24.42 Aligned_cols=58 Identities=16% Similarity=0.090 Sum_probs=40.2
Q ss_pred ceEEEEEEEEecccceeccCCCCCcEEEEEEEeCCCCeEEEEEcchh---HHHHHhhcccCcEEEEeeeE
Q 008606 127 RWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAV---VDRFYEIIEVGRVYLISKGS 193 (560)
Q Consensus 127 ~w~Ik~RV~~k~~ir~~~n~~g~gkvf~~~L~D~~g~~I~at~~~~~---~~kf~~~l~eG~vY~Is~~~ 193 (560)
.-+|.|.|+... .+. +...+.|-|..|..|.|.+|-+. +......+.+|++..+.+--
T Consensus 49 ~V~IvGiVv~~~---~~~------~~~~ytIDD~TG~~I~cv~w~~~~~~~~~~~~~l~~G~~VrV~G~v 109 (159)
T 3kf6_A 49 WIQIVGYIAAID---IYE------GKHVLTVDDCSGMVLRVVFIIQDDFSMSKRAISMSPGNVVCVFGKI 109 (159)
T ss_dssp EEEEEEEEEEEE---EET------TEEEEEEECSSSCEEEEEEEGGGCHHHHHHHTTCCTTCEEEEEEEE
T ss_pred EEEEEEEEEEEE---EeC------CEEEEEEecCCCCeEEEEEEccCCCCcccccccCCCCCEEEEEEEE
Confidence 457899999853 221 33566677765667999999765 32455568999999887653
No 156
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=22.75 E-value=49 Score=26.40 Aligned_cols=31 Identities=10% Similarity=0.344 Sum_probs=17.6
Q ss_pred ccCceeeecC--C--eeecCcCCCccCCceeEEEE
Q 008606 428 QCNKKVTQSG--N--RWQCDRCNQEIDECDYRYLL 458 (560)
Q Consensus 428 ~C~KKv~~~~--~--~~~C~kC~~~~~~~~~rY~l 458 (560)
.|++.+..-. + .|+|..|+.-.+.-..+|.+
T Consensus 36 eCgq~Le~lkACGA~~yFC~~C~~LiSkkrv~f~~ 70 (81)
T 2jrp_A 36 DCRQPLQVLKACGAVDYFCQNGHGLISKKRVNFVI 70 (81)
T ss_dssp SSCSCCCEEEETTEEEECCTTTTCCCCTTSSEEEE
T ss_pred chhhHHHHHHhcCCcCeeeccCCCEeecceEEEEe
Confidence 6777664321 1 68888887755443344443
No 157
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=22.30 E-value=67 Score=26.92 Aligned_cols=31 Identities=19% Similarity=0.434 Sum_probs=25.2
Q ss_pred EEEEeCCCeEEEEEehhhhhhhcCCCHHHHHHh
Q 008606 460 AQIQDQTGLTWVTAFQESGEEILGCPAKELYML 492 (560)
Q Consensus 460 ~~i~D~Tgs~~~~~Fd~~ae~llG~sA~el~~~ 492 (560)
+.+.|..|. ++.++..|++|+|.++++|...
T Consensus 20 i~~~D~~g~--I~~~N~aa~~l~G~~~~el~G~ 50 (129)
T 3mfx_A 20 MILVNANGF--IRSCNQRSAELLDCPQVSLKGQ 50 (129)
T ss_dssp EEEEETTSB--EEEECHHHHHHTTSCHHHHTTS
T ss_pred EEEECCCCE--EEeEhHHHHHHHCcCHHHHcCC
Confidence 567888884 5667999999999999998753
No 158
>1tqz_A Necap1; endocytosis, structural genomics, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: b.55.1.11
Probab=21.94 E-value=77 Score=27.66 Aligned_cols=55 Identities=29% Similarity=0.396 Sum_probs=37.3
Q ss_pred CCCCCCCCCCCCccCCCCCCcceeccccCCCCCceEEEEEEEEecccceeccCCCCCcEEEEEEEeCCCCeEEEEEcc
Q 008606 94 YQPPPNFRNHGPILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFN 171 (560)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~pI~~L~p~~~~w~Ik~RV~~k~~ir~~~n~~g~gkvf~~~L~D~~g~~I~at~~~ 171 (560)
|+.||.-.++|--+ .+=+....-|+=+.||+.++ +...+.|.|...|++-|.|+=
T Consensus 20 Y~IPP~~s~~GyrA-----------~dW~~~~~~wtGrlrv~~~g------------~~~~I~LeD~~tGeLFA~cPv 74 (133)
T 1tqz_A 20 YRIPPRASNRGYRA-----------SDWKLDQPDWTGRLRITSKG------------KIAYIKLEDKVSGELFAQAPV 74 (133)
T ss_dssp EECCSCCSSSSCCH-----------HHHCCSSSCEEEEEEEECCS------------SSEEEEEECSSCCSSCEEEEE
T ss_pred EecCCCCCCCCccc-----------ccCCCCCceeEEEEEEEEeC------------CEEEEEEEeCCCCcEEEeCcc
Confidence 55555556666644 22222334699999998753 457889999998888888765
No 159
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=21.48 E-value=40 Score=26.47 Aligned_cols=31 Identities=13% Similarity=0.129 Sum_probs=24.0
Q ss_pred EEEEeCC-CeEEEEEehhhhhhhcCCCHHHHHHh
Q 008606 460 AQIQDQT-GLTWVTAFQESGEEILGCPAKELYML 492 (560)
Q Consensus 460 ~~i~D~T-gs~~~~~Fd~~ae~llG~sA~el~~~ 492 (560)
+.+.|.. |. ++.++..|++|+|.+.+||...
T Consensus 11 i~~~d~~~g~--I~~~N~aa~~l~G~~~~el~g~ 42 (114)
T 1ll8_A 11 IFTVDAKTTE--ILVANDKACGLLGYSSQDLIGQ 42 (114)
T ss_dssp EEEEETTTCB--EEEECTTHHHHHTCCTTTTTTS
T ss_pred EEEEECCCCe--EEEehHHHHHHhCCCHHHHcCC
Confidence 4466765 75 5568999999999999998753
No 160
>4dam_A Single-stranded DNA-binding protein 1; OB-fold; 1.70A {Streptomyces coelicolor}
Probab=21.48 E-value=2e+02 Score=24.56 Aligned_cols=34 Identities=12% Similarity=-0.053 Sum_probs=22.2
Q ss_pred EEEEEEeCcchhhhhhhHHhhhccCCccEEEEE-EEEEecC
Q 008606 287 SVELTLWGDFCNKEGQKLQEMVDVGFFPVLSVK-SGKVNDF 326 (560)
Q Consensus 287 ~I~vtLWg~~a~~~~~~l~~~~~~~~~~VV~l~-~~rV~~f 326 (560)
-+.|++||+.|+...++| ..+.-|.|. ..+...|
T Consensus 64 w~~v~~wg~~Ae~~~~~l------~KG~~V~VeGrL~~~~~ 98 (128)
T 4dam_A 64 FFTVWANRQLATNASGSL------AVGDPVVVQGRLKVRTD 98 (128)
T ss_dssp EEEEEEEHHHHHHHHHHC------CTTCEEEEEEEEEEEEE
T ss_pred EEEEEEEcHHHHHHHHhc------CCCCEEEEEEEEEEeEE
Confidence 589999999998754443 345555554 4455556
No 161
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=21.05 E-value=27 Score=27.42 Aligned_cols=23 Identities=30% Similarity=0.761 Sum_probs=17.7
Q ss_pred eCCCCCcCccccCceeeecCCeeecCcCCCcc
Q 008606 418 TACPLMIGDRQCNKKVTQSGNRWQCDRCNQEI 449 (560)
Q Consensus 418 ~aC~~~~~~~~C~KKv~~~~~~~~C~kC~~~~ 449 (560)
..|. .|+|||... .+.|. |+..+
T Consensus 26 nRC~------~CrKkvgL~--gf~Cr-Cg~~F 48 (74)
T 1wfl_A 26 NRCF------MCRKKVGLT--GFDCR-CGNLF 48 (74)
T ss_dssp TBCS------SSCCBCGGG--CEECT-TSCEE
T ss_pred CcCh------hhCCccccc--CeecC-CCCEe
Confidence 4688 899998865 38888 88654
No 162
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=20.29 E-value=88 Score=22.27 Aligned_cols=31 Identities=13% Similarity=0.277 Sum_probs=24.3
Q ss_pred EEEEeCCCeEEEEEehhhhhhhcCCCHHHHHHh
Q 008606 460 AQIQDQTGLTWVTAFQESGEEILGCPAKELYML 492 (560)
Q Consensus 460 ~~i~D~Tgs~~~~~Fd~~ae~llG~sA~el~~~ 492 (560)
+.+.|..|. ++.++..+++++|.+++++...
T Consensus 5 i~~~d~~g~--i~~~N~~~~~l~g~~~~~~~g~ 35 (96)
T 3a0s_A 5 IITLSKDGR--ITEWNKKAEQLFGLKKENVLGR 35 (96)
T ss_dssp EEEEETTSB--EEEECHHHHHHHCCCHHHHTTS
T ss_pred EEEEcCCCC--EeehhHHHHHHhCCCHHHhcCC
Confidence 456787775 4568999999999999988653
Done!