Your job contains 1 sequence.
>008608
MLMSVFHPWLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLV
AGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVY
YKPRTSPSEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRW
RDSKWRCLKVRWDETSTIPRPERVSLWKIEPALAPPALNSLPMPRPKRPRSNMLPSSPDS
SVLTREGSSKLNVDPSSATGFSRVLQGQEFSTLRGNFAERESNESDTAEKSVVWPPSLDD
EKIDVVSASRRYGSENWVPPGRHEPVYTDLLSGFGANADPSHGFSSPFADAVPVRKSVLD
QEGKFNLVARPWSLMPSGPSLKMPESNAKVPVQGGDVNYQVRGNVRYGGFGDYPMLNGNR
VEHSHGNWLMPPLPPSNFENSAHSRELMPKSAMVQDQEAGKSKDCKLFGIPLFSNHVMPE
PVVSHRNTMNEPAGNLDQQFRAFESDQKSDHSKSSKLADDNQVFNEHEKPSQPSQTHTKD
VRSKTQCGSTRSCTKVPLPH
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 008608
(560 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2174013 - symbol:ARF2 "auxin response factor 2... 1692 3.7e-174 1
TAIR|locus:2025991 - symbol:ARF1 "auxin response factor 1... 819 1.7e-84 2
TAIR|locus:2138096 - symbol:ARF9 "auxin response factor 9... 777 7.4e-82 2
TAIR|locus:2076765 - symbol:ARF18 "auxin response factor ... 730 3.7e-74 2
TAIR|locus:2175098 - symbol:ARF4 "auxin response factor 4... 674 2.0e-72 3
TAIR|locus:2039124 - symbol:ARF11 "auxin response factor ... 710 2.3e-72 2
TAIR|locus:2014731 - symbol:ARF14 "auxin response factor ... 621 1.9e-66 3
TAIR|locus:2036288 - symbol:ARF22 "auxin response factor ... 626 1.1e-64 2
TAIR|locus:2204237 - symbol:ARF6 "auxin response factor 6... 654 5.3e-64 1
TAIR|locus:2026145 - symbol:ARF12 "auxin response factor ... 611 4.2e-63 2
TAIR|locus:2206717 - symbol:ARF20 "auxin response factor ... 593 6.1e-62 2
TAIR|locus:2057609 - symbol:ETT "ETTIN" species:3702 "Ara... 597 7.8e-62 2
TAIR|locus:2202205 - symbol:ARF19 "auxin response factor ... 639 9.4e-62 1
TAIR|locus:2009298 - symbol:ARF21 "auxin response factor ... 598 1.3e-61 2
TAIR|locus:2152642 - symbol:ARF8 "auxin response factor 8... 621 1.2e-60 1
TAIR|locus:2035454 - symbol:MP "MONOPTEROS" species:3702 ... 617 6.0e-60 1
TAIR|locus:2008991 - symbol:ARF13 "AUXIN RESPONSE FACTOR ... 369 2.5e-49 3
TAIR|locus:2057517 - symbol:ARF10 "auxin response factor ... 276 4.1e-39 2
TAIR|locus:2126460 - symbol:ARF16 "auxin response factor ... 277 4.9e-38 3
TAIR|locus:2029436 - symbol:ARF17 "auxin response factor ... 231 9.0e-26 2
TAIR|locus:2037169 - symbol:ARF23 "auxin response factor ... 215 8.8e-17 1
TAIR|locus:2164215 - symbol:DPA4 "DEVELOPMENT-RELATED PcG... 119 0.00024 1
>TAIR|locus:2174013 [details] [associations]
symbol:ARF2 "auxin response factor 2" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0009725 "response
to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IMP;TAS] [GO:0009911 "positive regulation of flower
development" evidence=IMP] [GO:0010047 "fruit dehiscence"
evidence=IMP] [GO:0010150 "leaf senescence" evidence=IMP]
[GO:0010227 "floral organ abscission" evidence=IMP] [GO:0008285
"negative regulation of cell proliferation" evidence=IMP]
[GO:0048481 "ovule development" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0009737 "response to abscisic acid
stimulus" evidence=IMP] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0042744 "hydrogen peroxide catabolic process"
evidence=RCA] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
GO:GO:0009737 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0045892 GO:GO:0008285 GO:GO:0009734 GO:GO:0043565
GO:GO:0003700 GO:GO:0006351 GO:GO:0010150 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 GO:GO:0009911 GO:GO:0010047
GO:GO:0010227 GO:GO:0048481 EMBL:AY669787 EMBL:AB016880
EMBL:AF336918 EMBL:AF378862 EMBL:BT000784 EMBL:BT001072
EMBL:AK221252 EMBL:AK221254 EMBL:AK221274 EMBL:AK221277
EMBL:AK221282 EMBL:AK221305 EMBL:U89771 EMBL:AJ441313 EMBL:AJ458328
IPI:IPI00518739 RefSeq:NP_201006.2 RefSeq:NP_851244.1
RefSeq:NP_974980.1 UniGene:At.21704 ProteinModelPortal:Q94JM3
SMR:Q94JM3 DIP:DIP-46014N IntAct:Q94JM3 STRING:Q94JM3 PaxDb:Q94JM3
PRIDE:Q94JM3 EnsemblPlants:AT5G62000.1 EnsemblPlants:AT5G62000.2
EnsemblPlants:AT5G62000.3 GeneID:836321 KEGG:ath:AT5G62000
GeneFarm:3364 TAIR:At5g62000 eggNOG:NOG255064 InParanoid:Q94JM3
OMA:HTESVEC PhylomeDB:Q94JM3 ProtClustDB:CLSN2680590
Genevestigator:Q94JM3 GermOnline:AT5G62000 Uniprot:Q94JM3
Length = 859
Score = 1692 (600.7 bits), Expect = 3.7e-174, P = 3.7e-174
Identities = 346/562 (61%), Positives = 404/562 (71%)
Query: 8 PWLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIF 67
P LDMSRQPPTQEL AKDLH NEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIF
Sbjct: 191 PPLDMSRQPPTQELVAKDLHANEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIF 250
Query: 68 LRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSP 127
LRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHA+STGTMFTVYYKPRTSP
Sbjct: 251 LRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRTSP 310
Query: 128 SEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWRDSKWRC 187
SEFIVP+DQYMES+KNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIE++DP RW SKWR
Sbjct: 311 SEFIVPFDQYMESVKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEESDPTRWPKSKWRS 370
Query: 188 LKVRWDETSTIPRPERVSLWKIEXXXXXXXXXXXXXXRPKRPRSNMLPSSPDSSVLTREG 247
LKVRWDETS+IPRP+RVS WK+E RPKRPRSN+ PSSPDSS+LTREG
Sbjct: 371 LKVRWDETSSIPRPDRVSPWKVEPALAPPALSPVPMPRPKRPRSNIAPSSPDSSMLTREG 430
Query: 248 SSKLNVDPSSATGFSRVLQGQEFSTLRGNFAERESNESDTAEKSVVWPPSLDDEKIDVVS 307
++K N+DP A+G SRVLQGQE+STLR E S E D E SVVW S DD+K+DVVS
Sbjct: 431 TTKANMDPLPASGLSRVLQGQEYSTLRTKHTE--SVECDAPENSVVWQSSADDDKVDVVS 488
Query: 308 ASRRYGSENWVPPGRHEPVYTDLLSGFGANADPSHGFSSPFAD-----AVPVRKSVLDQE 362
SRRYGSENW+ RHEP YTDLLSGFG N DPSHG PF D ++P ++ + D E
Sbjct: 489 GSRRYGSENWMSSARHEPTYTDLLSGFGTNIDPSHGQRIPFYDHSSSPSMPAKRILSDSE 548
Query: 363 GKFNLVARPWSLMPSGPSLKMPESNAKVPVQGGDVNYQVRGNVRYGGFGDYPMLNGNRVE 422
GKF+ +A W ++ SG SLK+ ES KVP D + Q R NV+Y +YP+LNG E
Sbjct: 549 GKFDYLANQWQMIHSGLSLKLHES-PKVPA-ATDASLQGRCNVKYS---EYPVLNGLSTE 603
Query: 423 HSHGNWLMPPLPPSNFEN------SAHSRELMPKSAMVQDQEAGKSKD--CKLFGIPLFS 474
++ GNW + P + +E A +RE + K +E KS++ C+LFGIPL +
Sbjct: 604 NAGGNWPIRPRALNYYEEVVNAQAQAQAREQVTKQPFTIQEETAKSREGNCRLFGIPLTN 663
Query: 475 NHVMPEPVVSHRNTMNEPAGNLDQQFRAFEXXXXXXXXXXXXLADDNQVFNEHEKPSQPS 534
N + +S RN +N+ AG Q + + +D++ E +P Q +
Sbjct: 664 NMNGTDSTMSQRNNLNDAAGLT--QIASPKVQDLSDQSKGSKSTNDHR---EQGRPFQTN 718
Query: 535 QTHTKDVRSKTQCGSTRSCTKV 556
H KD ++KT S+RSCTKV
Sbjct: 719 NPHPKDAQTKTN--SSRSCTKV 738
>TAIR|locus:2025991 [details] [associations]
symbol:ARF1 "auxin response factor 1" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding"
evidence=IEA;IDA;IPI] [GO:0005634 "nucleus" evidence=ISM;IEA;ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;TAS] [GO:0009725 "response to hormone stimulus"
evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS;TAS] [GO:0010150 "leaf
senescence" evidence=IGI] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0007267 "cell-cell signaling" evidence=RCA] [GO:0009616 "virus
induced gene silencing" evidence=RCA] [GO:0010267 "production of
ta-siRNAs involved in RNA interference" evidence=RCA] [GO:0016246
"RNA interference" evidence=RCA] [GO:0035196 "production of miRNAs
involved in gene silencing by miRNA" evidence=RCA] [GO:0009733
"response to auxin stimulus" evidence=IEP] InterPro:IPR003311
InterPro:IPR003340 InterPro:IPR010525 InterPro:IPR011525
Pfam:PF02309 Pfam:PF02362 Pfam:PF06507 PROSITE:PS50863
PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0045892 GO:GO:0009733
GO:GO:0009734 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0010150 EMBL:AC007258 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 EMBL:U83245 EMBL:AY133723 EMBL:BT002748
IPI:IPI00518211 IPI:IPI00520405 PIR:D96621 RefSeq:NP_001031208.1
RefSeq:NP_176184.1 RefSeq:NP_849830.1 UniGene:At.74832
ProteinModelPortal:Q8L7G0 SMR:Q8L7G0 IntAct:Q8L7G0 STRING:Q8L7G0
EnsemblPlants:AT1G59750.1 EnsemblPlants:AT1G59750.3 GeneID:842268
KEGG:ath:AT1G59750 GeneFarm:3363 TAIR:At1g59750 eggNOG:NOG257828
HOGENOM:HOG000241141 InParanoid:Q8L7G0 KO:K14486 OMA:QMPSFNL
PhylomeDB:Q8L7G0 ProtClustDB:CLSN2679699 Genevestigator:Q8L7G0
GermOnline:AT1G59750 Uniprot:Q8L7G0
Length = 665
Score = 819 (293.4 bits), Expect = 1.7e-84, Sum P(2) = 1.7e-84
Identities = 175/313 (55%), Positives = 209/313 (66%)
Query: 8 PWLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIF 67
P LDMS+QPP QEL A DLH +EW FRHIFRGQPRRHLL +GWSVFVSSK+LVAGDAFIF
Sbjct: 151 PPLDMSQQPPWQELVATDLHNSEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIF 210
Query: 68 LRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSP 127
LRGEN ELRVGVRR MRQQ N+PSSVISSHSMH+GVLATA HA++TGT+F+V+YKPRTS
Sbjct: 211 LRGENEELRVGVRRHMRQQTNIPSSVISSHSMHIGVLATAAHAITTGTIFSVFYKPRTSR 270
Query: 128 SEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWRDSKWRC 187
SEFIV ++Y+E+ S+GMRFKMRFEGEEAPE+RF+GTIVG+++ W DS+WR
Sbjct: 271 SEFIVSVNRYLEAKTQKLSVGMRFKMRFEGEEAPEKRFSGTIVGVQENKSSVWHDSEWRS 330
Query: 188 LKVRWDETSTIPRPERVSLWKIEXXXXXXXXXXXXX--XRPKRPRSNMLPS--SPDSSVL 243
LKV+WDE S++ RPERVS W++E R KRPR LPS + S +
Sbjct: 331 LKVQWDEPSSVFRPERVSPWELEPLVANSTPSSQPQPPQRNKRPRPPGLPSPATGPSGPV 390
Query: 244 TREGSSKLNVD-PSSATGFSRVLQGQEFSTLRGNFAERESNESDTAEKSVVWPPSLDDEK 302
T +G K D PSS FS + F GN + S WP + D
Sbjct: 391 TPDGVWKSPADTPSSVPLFSPPAKAATFGH-GGN------KSFGVSIGSAFWPTNADSAA 443
Query: 303 IDVVSASRRYGSE 315
SA +E
Sbjct: 444 ESFASAFNNESTE 456
Score = 46 (21.3 bits), Expect = 1.7e-84, Sum P(2) = 1.7e-84
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 525 NEHEKPSQPSQTHTKDVRS--KTQCGSTRSCTKV 556
N+ + PS +RS ++Q RSCTKV
Sbjct: 514 NQSDIPSGSGDPEKSSLRSPQESQSRQIRSCTKV 547
>TAIR|locus:2138096 [details] [associations]
symbol:ARF9 "auxin response factor 9" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;TAS] [GO:0009725 "response to hormone stimulus"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0009734
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 HOGENOM:HOG000241141
EMBL:AF082176 EMBL:AC002343 EMBL:AL078468 EMBL:AL161560
EMBL:AF344312 EMBL:AK221865 EMBL:AK228263 IPI:IPI00519218
IPI:IPI00657180 PIR:T08917 RefSeq:NP_001031706.1 RefSeq:NP_194129.1
UniGene:At.3396 ProteinModelPortal:Q9XED8 SMR:Q9XED8 IntAct:Q9XED8
PaxDb:Q9XED8 PRIDE:Q9XED8 EnsemblPlants:AT4G23980.1 GeneID:828498
KEGG:ath:AT4G23980 GeneFarm:3373 TAIR:At4g23980 eggNOG:NOG300390
InParanoid:Q9XED8 OMA:YAQITLI PhylomeDB:Q9XED8
ProtClustDB:CLSN2685375 Genevestigator:Q9XED8 Uniprot:Q9XED8
Length = 638
Score = 777 (278.6 bits), Expect = 7.4e-82, Sum P(2) = 7.4e-82
Identities = 153/284 (53%), Positives = 202/284 (71%)
Query: 8 PWLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIF 67
P LDM++Q PTQEL A+D+HG +W+F+HIFRGQPRRHLL +GWS FV+SKRLVAGD F+F
Sbjct: 143 PPLDMTQQTPTQELVAEDVHGYQWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVF 202
Query: 68 LRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSP 127
LRGENGELRVGVRRA QQ ++PSSVISSHSMHLGVLATA HA T TMF VYYKPRTS
Sbjct: 203 LRGENGELRVGVRRANLQQSSMPSSVISSHSMHLGVLATARHATQTKTMFIVYYKPRTS- 261
Query: 128 SEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWRDSKWRC 187
+FI+ ++Y+E++ N +S+GMRFKMRFEGE++PE+R++GT++G++D P W+DSKWRC
Sbjct: 262 -QFIISLNKYLEAMSNKFSVGMRFKMRFEGEDSPERRYSGTVIGVKDCSPH-WKDSKWRC 319
Query: 188 LKVRWDETSTIPRPERVSLWKIEXXXXXXXXXXXXXXRPKRPRSNMLPSSPDSSVLTREG 247
L+V WDE ++I RP +VS W+IE + KRPR S+ D +
Sbjct: 320 LEVHWDEPASISRPNKVSPWEIEPFVNSENVPKSVMLKNKRPRQVSEVSALDVGITASNL 379
Query: 248 SSKLNVDPSSATGFSRVLQGQEFSTLRGNFAERESNESDTAEKS 291
S + P F++ ++S+ + R++NE A+KS
Sbjct: 380 WSSVLTQPHE---FAQSCITSQWSSPQQ--CHRDANED--AKKS 416
Score = 63 (27.2 bits), Expect = 7.4e-82, Sum P(2) = 7.4e-82
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 528 EKPSQPSQTHTKDVRSKTQCGSTRSCTKVPL 558
EK +P++ K+V+SK Q STRS TKV +
Sbjct: 501 EKKQEPAEGSPKEVQSK-QSSSTRSRTKVQM 530
>TAIR|locus:2076765 [details] [associations]
symbol:ARF18 "auxin response factor 18" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0009725 "response
to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 EMBL:AL132959 HOGENOM:HOG000241141 EMBL:AF334717
EMBL:AY059746 EMBL:AY070463 EMBL:AY091392 EMBL:AK229945
IPI:IPI00524053 PIR:T47975 RefSeq:NP_567119.1 UniGene:At.17167
UniGene:At.69165 ProteinModelPortal:Q9C5W9 SMR:Q9C5W9 IntAct:Q9C5W9
EnsemblPlants:AT3G61830.1 GeneID:825356 KEGG:ath:AT3G61830
GeneFarm:3414 TAIR:At3g61830 eggNOG:NOG268528 InParanoid:Q9C5W9
OMA:RISQFIV PhylomeDB:Q9C5W9 ProtClustDB:CLSN2917487
Genevestigator:Q9C5W9 GermOnline:AT3G61830 Uniprot:Q9C5W9
Length = 602
Score = 730 (262.0 bits), Expect = 3.7e-74, Sum P(2) = 3.7e-74
Identities = 152/284 (53%), Positives = 192/284 (67%)
Query: 8 PWLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIF 67
P LDM++ PTQEL +DLHG EWRF+HIFRGQPRRHLL +GWS FVSSKRLVAGDAF+F
Sbjct: 155 PSLDMTQATPTQELVTRDLHGFEWRFKHIFRGQPRRHLLTTGWSTFVSSKRLVAGDAFVF 214
Query: 68 LRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSP 127
LRGENG+LRVGVRR R Q +P+SVISS SMHLGVLATA HAV T T+F V+YKPR S
Sbjct: 215 LRGENGDLRVGVRRLARHQSTMPTSVISSQSMHLGVLATASHAVRTTTIFVVFYKPRIS- 273
Query: 128 SEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWRDSKWRC 187
+FIV ++YME+IK+ +S+G RF+MRFEGEE+PE+ FTGTIVG D Q W SKWR
Sbjct: 274 -QFIVGVNKYMEAIKHGFSLGTRFRMRFEGEESPERIFTGTIVGSGDLSSQ-WPASKWRS 331
Query: 188 LKVRWDETSTIPRPERVSLWKIEXXXXXXXXXXXXXXRPKRPRSNMLPSSP-DSSVLTRE 246
L+V+WDE +T+ RP++VS W+IE ++P+S S P + SV T
Sbjct: 332 LQVQWDEPTTVQRPDKVSPWEIEPFLATSPISTPA----QQPQSKCKRSRPIEPSVKTPA 387
Query: 247 GSSKLNVDPSSATGFS---RVLQGQEFSTLRGNFAERESNESDT 287
S L P S + ++ Q + G ++ S + +T
Sbjct: 388 PPSFLYSLPQSQDSINASLKLFQDPSLERISGGYSSNNSFKPET 431
Score = 37 (18.1 bits), Expect = 3.7e-74, Sum P(2) = 3.7e-74
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 466 KLFGIPLFSNHVMPEPVVSHRNTMN 490
+LFG L SN P P+ + M+
Sbjct: 441 RLFGFDLTSNS--PAPIPQDKQPMD 463
>TAIR|locus:2175098 [details] [associations]
symbol:ARF4 "auxin response factor 4" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;ISS] [GO:0009725 "response to hormone stimulus"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0010158 "abaxial
cell fate specification" evidence=IGI] [GO:0010050 "vegetative
phase change" evidence=IGI] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009734
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 EMBL:AB011483 GO:GO:0010050
HOGENOM:HOG000241141 GO:GO:0010158 EMBL:AF013466 EMBL:AF344313
EMBL:AY080832 EMBL:AY113977 IPI:IPI00525857 RefSeq:NP_200853.1
UniGene:At.6797 ProteinModelPortal:Q9ZTX9 SMR:Q9ZTX9 IntAct:Q9ZTX9
STRING:Q9ZTX9 PaxDb:Q9ZTX9 PRIDE:Q9ZTX9 EnsemblPlants:AT5G60450.1
GeneID:836166 KEGG:ath:AT5G60450 GeneFarm:3367 TAIR:At5g60450
eggNOG:NOG277773 InParanoid:Q9ZTX9 OMA:RILYTDS PhylomeDB:Q9ZTX9
ProtClustDB:CLSN2686689 Genevestigator:Q9ZTX9 GermOnline:AT5G60450
Uniprot:Q9ZTX9
Length = 788
Score = 674 (242.3 bits), Expect = 2.0e-72, Sum P(3) = 2.0e-72
Identities = 130/264 (49%), Positives = 179/264 (67%)
Query: 6 FHPWLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAF 65
F P LD +Q P+QEL AKDLHG EW+FRHI+RGQPRRHLL +GWS+FVS K LV+GDA
Sbjct: 203 FAP-LDYKQQRPSQELIAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAV 261
Query: 66 IFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRT 125
+FLR E GELR+G+RRA R + +P S+I +S +L+ +AVST +MF V+Y PR
Sbjct: 262 LFLRDEGGELRLGIRRAARPRNGLPDSIIEKNSCS-NILSLVANAVSTKSMFHVFYSPRA 320
Query: 126 SPSEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWRDSKW 185
+ +EF++PY++Y+ SI++ IG RF+MRFE +++PE+R G + G+ D DP RW +SKW
Sbjct: 321 THAEFVIPYEKYITSIRSPVCIGTRFRMRFEMDDSPERRCAGVVTGVCDLDPYRWPNSKW 380
Query: 186 RCLKVRWDETSTIPRPERVSLWKIEXXXXXXXXXXXXXXRPKRPRSNMLPSSPDSSVLTR 245
RCL VRWDE+ ERVS W+I+ RPKRP + +L ++P + +T+
Sbjct: 381 RCLLVRWDESFVSDHQERVSPWEIDPSVSLPHLSIQSSPRPKRPWAGLLDTTPPGNPITK 440
Query: 246 EGSSKLNVDPSSATGFSRVLQGQE 269
G L+ + S S+VLQGQE
Sbjct: 441 RGGF-LDFEESVRP--SKVLQGQE 461
Score = 48 (22.0 bits), Expect = 2.0e-72, Sum P(3) = 2.0e-72
Identities = 22/71 (30%), Positives = 31/71 (43%)
Query: 261 FSRVLQGQEFSTLRG--NFAERESNESDT-----AEKSVVWPPSLDDEKIDVVSASRRY- 312
F RVLQGQE +L+ FA + A KS +P +L + V Y
Sbjct: 523 FPRVLQGQEICSLKSFPQFAGFSPAAAPNPFAYQANKSSYYPLALHGIRSTHVPYQNPYN 582
Query: 313 -GSENWVPPGR 322
G+++ PP R
Sbjct: 583 AGNQSSGPPSR 593
Score = 41 (19.5 bits), Expect = 2.0e-72, Sum P(3) = 2.0e-72
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 543 SKTQCGSTRSCTKV 556
SK Q S R CTKV
Sbjct: 657 SKPQSSSKRICTKV 670
>TAIR|locus:2039124 [details] [associations]
symbol:ARF11 "auxin response factor 11" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0009725 "response to hormone stimulus"
evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0009506 "plasmodesma" evidence=IDA]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 GO:GO:0009506
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009734
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 EMBL:AC006526 EMBL:AC006418
HOGENOM:HOG000241141 EMBL:AY669791 EMBL:AK229757 EMBL:BX837073
EMBL:AK229924 IPI:IPI00544804 IPI:IPI00547357 IPI:IPI00656718
PIR:A84904 RefSeq:NP_001031548.1 RefSeq:NP_182176.2
RefSeq:NP_973701.1 UniGene:At.36497 ProteinModelPortal:Q9ZPY6
SMR:Q9ZPY6 PRIDE:Q9ZPY6 EnsemblPlants:AT2G46530.3 GeneID:819264
KEGG:ath:AT2G46530 GeneFarm:3388 TAIR:At2g46530 eggNOG:NOG303653
InParanoid:Q9ZPY6 OMA:MFEIEGE PhylomeDB:Q9ZPY6
ProtClustDB:CLSN2681223 ArrayExpress:Q9ZPY6 Genevestigator:Q9ZPY6
Uniprot:Q9ZPY6
Length = 622
Score = 710 (255.0 bits), Expect = 2.3e-72, Sum P(2) = 2.3e-72
Identities = 141/252 (55%), Positives = 179/252 (71%)
Query: 8 PWLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIF 67
P LDM++ PTQEL A+DLHG EWRF+HIFRGQPRRHLL +GWS FV+SKRLVAGDAF+F
Sbjct: 172 PSLDMTQPTPTQELVARDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVF 231
Query: 68 LRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSP 127
LRGE G+LRVGVRR +QQ +P+SVISS SM LGVLATA HAV+T T+F V+YKPR S
Sbjct: 232 LRGETGDLRVGVRRLAKQQSTMPASVISSQSMRLGVLATASHAVTTTTIFVVFYKPRIS- 290
Query: 128 SEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWRDSKWRC 187
+FI+ ++YM ++KN +S+GMR++MRFEGEE+PE+ FTGTI+G D Q W SKWR
Sbjct: 291 -QFIISVNKYMMAMKNGFSLGMRYRMRFEGEESPERIFTGTIIGSGDLSSQ-WPASKWRS 348
Query: 188 LKVRWDETSTIPRPERVSLWKIEXXXXXXXXXXXXXXRPKRPRS---NMLPSSPDSSVLT 244
L+++WDE S+I RP +VS W+IE + K RS + + SP +S
Sbjct: 349 LQIQWDEPSSIQRPNKVSPWEIEPFSPSALTPTPTQQQSKSKRSRPISEITGSPVASSFL 408
Query: 245 REGSSKLNVDPS 256
S +PS
Sbjct: 409 SSFSQSHESNPS 420
Score = 40 (19.1 bits), Expect = 2.3e-72, Sum P(2) = 2.3e-72
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 435 PSNFENSAHSRELMPKSAMVQDQEAGKSKDCKLFGIPLFS 474
P+ NS ++ + + EA + C+LFG L S
Sbjct: 428 PATERNS--NKSVFSSGLQCKITEAPVTSSCRLFGFDLTS 465
>TAIR|locus:2014731 [details] [associations]
symbol:ARF14 "auxin response factor 14" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 HOGENOM:HOG000241141 eggNOG:NOG264447
ProtClustDB:CLSN2681760 EMBL:AC007887 IPI:IPI00548517 PIR:G86476
RefSeq:NP_174786.1 UniGene:At.39556 ProteinModelPortal:Q9LQE8
SMR:Q9LQE8 IntAct:Q9LQE8 PRIDE:Q9LQE8 EnsemblPlants:AT1G35540.1
GeneID:840450 KEGG:ath:AT1G35540 GeneFarm:3394 TAIR:At1g35540
OMA:DITEDAM PhylomeDB:Q9LQE8 Genevestigator:Q9LQE8 Uniprot:Q9LQE8
Length = 605
Score = 621 (223.7 bits), Expect = 1.9e-66, Sum P(3) = 1.9e-66
Identities = 117/231 (50%), Positives = 158/231 (68%)
Query: 8 PWLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIF 67
P LDMS+ PTQE+ A DLHGN+WRFRHI+RG +RHLL GW+ F +SK+LV GD +F
Sbjct: 153 PPLDMSQPLPTQEILAIDLHGNQWRFRHIYRGTAQRHLLTIGWNAFTTSKKLVEGDVIVF 212
Query: 68 LRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSP 127
+RGE GELRVG+RRA QQGN+PSS++S SM G++A+A HA MF V YKPR+S
Sbjct: 213 VRGETGELRVGIRRAGHQQGNIPSSIVSIESMRHGIIASAKHAFDNQCMFIVVYKPRSS- 271
Query: 128 SEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWRDSKWRC 187
+FIV YD++++ + N +++G RF MRFEG++ E+R GTI+G+ D P W+ S+WR
Sbjct: 272 -QFIVSYDKFLDVVNNKFNVGSRFTMRFEGDDFSERRSFGTIIGVSDFSPH-WKCSEWRS 329
Query: 188 LKVRWDETSTIPRPERVSLWKIEXXXXXXXXXXXXXXRPKRPRS-NMLPSS 237
L+V+WDE ++ PRP +VS W IE + KR R N + SS
Sbjct: 330 LEVQWDEFASFPRPNQVSPWDIEHLTPWSNVSRSSFLKNKRSREVNEIGSS 380
Score = 48 (22.0 bits), Expect = 1.9e-66, Sum P(3) = 1.9e-66
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 540 DVRSKTQCGSTRSCTKVPL 558
+++SK Q STR+CTKV +
Sbjct: 500 EIQSK-QFSSTRTCTKVQM 517
Score = 37 (18.1 bits), Expect = 1.9e-66, Sum P(3) = 1.9e-66
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 466 KLFGIPLFSNHVMPEPV 482
+LFG+ L + V+ +PV
Sbjct: 457 RLFGVSLATPSVIKDPV 473
>TAIR|locus:2036288 [details] [associations]
symbol:ARF22 "auxin response factor 22" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 HOGENOM:HOG000241141 ProtClustDB:CLSN2681760
EMBL:AC023913 EMBL:AY669796 IPI:IPI00545778 PIR:C86468
RefSeq:NP_174699.2 UniGene:At.51186 ProteinModelPortal:Q9C8N7
SMR:Q9C8N7 IntAct:Q9C8N7 EnsemblPlants:AT1G34390.1 GeneID:840341
KEGG:ath:AT1G34390 GeneFarm:3426 TAIR:At1g34390 OMA:NITTNAN
PhylomeDB:Q9C8N7 Genevestigator:Q9C8N7 Uniprot:Q9C8N7
Length = 598
Score = 626 (225.4 bits), Expect = 1.1e-64, Sum P(2) = 1.1e-64
Identities = 113/203 (55%), Positives = 153/203 (75%)
Query: 8 PWLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIF 67
P LDMS+ PTQEL A DLHGN+WRF H +RG P+RHLL +GW+ F +SK+LVAGD +F
Sbjct: 151 PPLDMSQPLPTQELLATDLHGNQWRFNHNYRGTPQRHLLTTGWNAFTTSKKLVAGDVIVF 210
Query: 68 LRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSP 127
+RGE GELRVG+RRA QQGN+PSS+IS SM GV+A+A HA MF V YKPR+S
Sbjct: 211 VRGETGELRVGIRRAGHQQGNIPSSIISIESMRHGVIASAKHAFDNQCMFIVVYKPRSS- 269
Query: 128 SEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWRDSKWRC 187
+FIV YD++++++ N +++G RF MRFEG++ E+R+ GTI+G+ D P W+ S+WR
Sbjct: 270 -QFIVSYDKFLDAVNNKFNVGSRFTMRFEGDDFSERRYFGTIIGVSDFSPH-WKCSEWRN 327
Query: 188 LKVRWDETSTIPRPERVSLWKIE 210
L+V+WDE ++ RP +VS W+IE
Sbjct: 328 LEVQWDEFASFSRPNKVSPWEIE 350
Score = 51 (23.0 bits), Expect = 1.1e-64, Sum P(2) = 1.1e-64
Identities = 27/97 (27%), Positives = 44/97 (45%)
Query: 472 LFSNHVMPEPVVSHRNTM-NEPAGNLDQQ----FRAFEXXXXXXXXXXXXLAD-DNQV-- 523
L S V P P +++ N M + N+ + FR F + + +++
Sbjct: 422 LMSYPVQPMPKLNYNNQMVTQIEENITTKTGTNFRLFGVSLVTPSVIKDPIEEIGSEISK 481
Query: 524 FNEHEKPSQPSQT--HTKDVRSKTQCGSTRSCTKVPL 558
E +K Q SQT +++SK Q STR+CTKV +
Sbjct: 482 LTEGKKFGQ-SQTLRSPTEIQSK-QFSSTRTCTKVQM 516
Score = 37 (18.1 bits), Expect = 3.3e-63, Sum P(2) = 3.3e-63
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 466 KLFGIPLFSNHVMPEPV 482
+LFG+ L + V+ +P+
Sbjct: 456 RLFGVSLVTPSVIKDPI 472
>TAIR|locus:2204237 [details] [associations]
symbol:ARF6 "auxin response factor 6" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;ISS] [GO:0009725 "response to hormone stimulus"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0009733 "response
to auxin stimulus" evidence=IMP] [GO:0009908 "flower development"
evidence=IGI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0009855 "determination of bilateral symmetry" evidence=RCA]
[GO:0009886 "post-embryonic morphogenesis" evidence=RCA]
[GO:0009887 "organ morphogenesis" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010014
"meristem initiation" evidence=RCA] [GO:0010051 "xylem and phloem
pattern formation" evidence=RCA] [GO:0010073 "meristem maintenance"
evidence=RCA] [GO:0048439 "flower morphogenesis" evidence=RCA]
[GO:0048481 "ovule development" evidence=RCA] [GO:0048507 "meristem
development" evidence=RCA] [GO:0048519 "negative regulation of
biological process" evidence=RCA] InterPro:IPR003311
InterPro:IPR003340 InterPro:IPR010525 InterPro:IPR011525
Pfam:PF02309 Pfam:PF02362 Pfam:PF06507 PROSITE:PS50863
PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009733 GO:GO:0009734
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AC025295
Gene3D:2.40.330.10 InterPro:IPR015300 SUPFAM:SSF101936
GO:GO:0009908 HOGENOM:HOG000241141 EMBL:AF013467 EMBL:AY669788
EMBL:EU550049 EMBL:EU550050 EMBL:EU550051 EMBL:EU550052
EMBL:EU550053 EMBL:EU550054 EMBL:EU550055 EMBL:EU550056
EMBL:EU550057 EMBL:EU550058 EMBL:EU550059 EMBL:EU550060
EMBL:EU550061 EMBL:EU550062 EMBL:EU550063 EMBL:EU550064
EMBL:EU550065 EMBL:EU550066 EMBL:EU550067 EMBL:EU550068
EMBL:EU550069 EMBL:EU550070 EMBL:EU550071 EMBL:EU550072
IPI:IPI00533211 IPI:IPI00656643 PIR:F86427 RefSeq:NP_001031115.1
RefSeq:NP_174323.1 UniGene:At.21939 ProteinModelPortal:Q9ZTX8
SMR:Q9ZTX8 IntAct:Q9ZTX8 STRING:Q9ZTX8 PaxDb:Q9ZTX8 PRIDE:Q9ZTX8
EnsemblPlants:AT1G30330.2 GeneID:839913 KEGG:ath:AT1G30330
GeneFarm:3369 TAIR:At1g30330 eggNOG:NOG288258 InParanoid:Q9ZTX8
OMA:ANSHWRS PhylomeDB:Q9ZTX8 ProtClustDB:CLSN2686713
Genevestigator:Q9ZTX8 GermOnline:AT1G30330 Uniprot:Q9ZTX8
Length = 935
Score = 654 (235.3 bits), Expect = 5.3e-64, P = 5.3e-64
Identities = 127/233 (54%), Positives = 165/233 (70%)
Query: 5 VFHPWLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDA 64
VF P LD S+QPP QEL A+DLH NEW+FRHIFRGQP+RHLL +GWSVFVS+KRLVAGD+
Sbjct: 154 VFPP-LDYSQQPPAQELMARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDS 212
Query: 65 FIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPR 124
+F+ + +L +G+RRA R Q +PSSV+SS SMHLG+LA A HA +T + FT++Y PR
Sbjct: 213 VLFIWNDKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPR 272
Query: 125 TSPSEFIVPYDQYMESIKNN-YSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWRDS 183
SPSEF++P +Y++++ + S+GMRF+M FE EE+ +R+ GTI GI D DP RW +S
Sbjct: 273 ASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGICDLDPTRWANS 332
Query: 184 KWRCLKVRWDETSTIPRPERVSLWKIEXXXXXXXXXXXXXXRPKRPRSNMLPS 236
WR +KV WDE++ R RVSLW+IE R KRP LPS
Sbjct: 333 HWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPS 385
>TAIR|locus:2026145 [details] [associations]
symbol:ARF12 "auxin response factor 12" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0009725 "response
to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 HOGENOM:HOG000241141 EMBL:AY669792 EMBL:AC007454
IPI:IPI00544760 PIR:C86467 RefSeq:NP_174691.2 UniGene:At.51185
ProteinModelPortal:Q9XID4 SMR:Q9XID4 IntAct:Q9XID4
EnsemblPlants:AT1G34310.1 GeneID:840331 KEGG:ath:AT1G34310
GeneFarm:3390 TAIR:At1g34310 eggNOG:NOG264447 PhylomeDB:Q9XID4
ProtClustDB:CLSN2681760 ArrayExpress:Q9XID4 Genevestigator:Q9XID4
GermOnline:AT1G34310 Uniprot:Q9XID4
Length = 593
Score = 611 (220.1 bits), Expect = 4.2e-63, Sum P(2) = 4.2e-63
Identities = 116/231 (50%), Positives = 158/231 (68%)
Query: 8 PWLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIF 67
P LDMS+ P QEL A DLHGN+WRF H +RG P+RHLL +GW+ F +SK+LVAGD +F
Sbjct: 153 PSLDMSQPLPAQELLAIDLHGNQWRFNHNYRGTPQRHLLTTGWNAFTTSKKLVAGDVIVF 212
Query: 68 LRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSP 127
+RGE GELRVG+RRA QQGN+PSS++S M GV+A+A HA MFTV YKPR+S
Sbjct: 213 VRGETGELRVGIRRARHQQGNIPSSIVSIDCMRHGVVASAKHAFDNQCMFTVVYKPRSS- 271
Query: 128 SEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWRDSKWRC 187
+FIV YD++++++ N +++G RF MR EG++ E+R GTI+G+ D P W+ S+WR
Sbjct: 272 -KFIVSYDKFLDAVNNKFNVGSRFTMRLEGDDFSERRCFGTIIGVSDFSPH-WKCSEWRS 329
Query: 188 LKVRWDETSTIPRPERVSLWKIEXXXXXXXXXXXXXXRPKRPRS-NMLPSS 237
L+V+WDE ++ P P++VS W IE + KR R N + SS
Sbjct: 330 LEVQWDEFTSFPGPKKVSPWDIEHLMPAINVPRSFLLKNKRLREVNEIGSS 380
Score = 51 (23.0 bits), Expect = 4.2e-63, Sum P(2) = 4.2e-63
Identities = 35/144 (24%), Positives = 62/144 (43%)
Query: 424 SHGNWLMPPLPPSNFENSAHSRELMPKSAMVQDQEAGKSKDCKLFGIPLFSNHVMPEPVV 483
S + L+PP+ EN S P + ++ ++A ++D L S V P P +
Sbjct: 379 SSSSHLLPPILTQGQENEQLS-VASPMNISLRYRDA--TEDAMNPSKLLMSYPVQPMPKL 435
Query: 484 SHRNTM-NEPAGNLDQQ----FRAFEXXXXXXXXXXXXLAD-DNQVFNEHE-KPSQPSQT 536
++ N M E N+ + FR F + + +++ E K SQT
Sbjct: 436 NYNNQMVTEMEENITTKTGTNFRLFGVTLDTPPVIKDPIEEIGSEISKLTEGKKFGLSQT 495
Query: 537 --HTKDVRSKTQCGSTRSCTKVPL 558
++++K Q S+R+CTKV +
Sbjct: 496 LRSPTEIQNK-QFSSSRTCTKVQM 518
>TAIR|locus:2206717 [details] [associations]
symbol:ARF20 "auxin response factor 20" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 EMBL:AC069160 HOGENOM:HOG000241141
eggNOG:NOG264447 ProtClustDB:CLSN2681760 EMBL:AY669795
IPI:IPI00656906 PIR:D86473 RefSeq:NP_174758.2 UniGene:At.51187
ProteinModelPortal:Q9C7I9 SMR:Q9C7I9 IntAct:Q9C7I9 PaxDb:Q9C7I9
PRIDE:Q9C7I9 EnsemblPlants:AT1G35240.1 GeneID:840413
KEGG:ath:AT1G35240 GeneFarm:3424 TAIR:At1g35240 PhylomeDB:Q9C7I9
Genevestigator:Q9C7I9 GermOnline:AT1G35240 Uniprot:Q9C7I9
Length = 590
Score = 593 (213.8 bits), Expect = 6.1e-62, Sum P(2) = 6.1e-62
Identities = 106/214 (49%), Positives = 147/214 (68%)
Query: 17 PTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELR 76
P QEL AKDLHGN+WRFRH +RG P+RH L +GW+ F +SK+LV GD +F+RGE GELR
Sbjct: 158 PAQELLAKDLHGNQWRFRHSYRGTPQRHSLTTGWNEFTTSKKLVKGDVIVFVRGETGELR 217
Query: 77 VGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQ 136
VG+RRA QQGN+PSS++S M GV+A+A HA+ +F V YKP S+FIV YD+
Sbjct: 218 VGIRRARHQQGNIPSSIVSIDCMRHGVIASAKHALDNQCIFIVVYKPSIRSSQFIVSYDK 277
Query: 137 YMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWRDSKWRCLKVRWDETS 196
+++++ N + +G RF MRFEG++ E+R+ GTI+G+ D P W+ S+WR L+V+WDE +
Sbjct: 278 FLDAMNNKFIVGSRFTMRFEGDDFSERRYFGTIIGVNDFSPH-WKCSEWRSLEVQWDEFA 336
Query: 197 TIPRPERVSLWKIEXXXXXXXXXXXXXXRPKRPR 230
+ RP +VS W+IE + KR R
Sbjct: 337 SFSRPNKVSPWEIEHLMSALNVPRSSLLKNKRLR 370
Score = 58 (25.5 bits), Expect = 6.1e-62, Sum P(2) = 6.1e-62
Identities = 29/97 (29%), Positives = 43/97 (44%)
Query: 472 LFSNHVMPEPVVSHRNTM-NEPAGNLDQQ----FRAFEXXXXXXXXXXXXLAD---DNQV 523
L S V P P +++ N M + N+ + FR F + + D
Sbjct: 408 LMSYPVQPMPKLNYNNQMVTQIEENITTKAVTNFRLFGVSLAIPLVIKDPIEEIGSDISK 467
Query: 524 FNEHEKPSQPSQTHTK--DVRSKTQCGSTRSCTKVPL 558
E +K Q SQT +++SK Q GSTR+CTKV +
Sbjct: 468 LTEGKKFGQ-SQTLRSPIEIQSK-QFGSTRTCTKVQM 502
>TAIR|locus:2057609 [details] [associations]
symbol:ETT "ETTIN" species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009725 "response to hormone
stimulus" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS;TAS] [GO:0009850 "auxin
metabolic process" evidence=TAS] [GO:0010158 "abaxial cell fate
specification" evidence=IGI] [GO:0010050 "vegetative phase change"
evidence=IGI;RCA;IMP] [GO:0007389 "pattern specification process"
evidence=RCA] [GO:0009616 "virus induced gene silencing"
evidence=RCA] [GO:0009855 "determination of bilateral symmetry"
evidence=RCA] [GO:0009887 "organ morphogenesis" evidence=RCA]
[GO:0010051 "xylem and phloem pattern formation" evidence=RCA]
[GO:0048438 "floral whorl development" evidence=RCA] [GO:0048439
"flower morphogenesis" evidence=RCA] [GO:0048519 "negative
regulation of biological process" evidence=RCA] [GO:0009733
"response to auxin stimulus" evidence=ISS] InterPro:IPR003340
InterPro:IPR010525 Pfam:PF02362 Pfam:PF06507 PROSITE:PS50863
SMART:SM01019 GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0009733 GO:GO:0009734 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0009850 GO:GO:0010050 HOGENOM:HOG000241141
KO:K14486 EMBL:U89296 EMBL:AF007788 EMBL:U78721 EMBL:AF336917
EMBL:AF360313 EMBL:AY056365 EMBL:AB199791 IPI:IPI00527337
PIR:E84750 PIR:T03278 RefSeq:NP_180942.1 UniGene:At.10360
ProteinModelPortal:O23661 SMR:O23661 IntAct:O23661 STRING:O23661
EnsemblPlants:AT2G33860.1 GeneID:817956 KEGG:ath:AT2G33860
GeneFarm:3366 TAIR:At2g33860 eggNOG:NOG315820 InParanoid:O23661
OMA:HESNNES PhylomeDB:O23661 ProtClustDB:CLSN2913114
Genevestigator:O23661 GermOnline:AT2G33860 GO:GO:0010158
Uniprot:O23661
Length = 608
Score = 597 (215.2 bits), Expect = 7.8e-62, Sum P(2) = 7.8e-62
Identities = 122/262 (46%), Positives = 161/262 (61%)
Query: 8 PWLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIF 67
P LD S+ P+QEL A+DLHG EWRFRHI+RGQPRRHLL +GWS FV+ K+LV+GDA +F
Sbjct: 186 PPLDYSQPRPSQELLARDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLF 245
Query: 68 LRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSP 127
LRG++G+LR+GVRRA + +G S + +M+ + HA+ST ++F++ Y P+ S
Sbjct: 246 LRGDDGKLRLGVRRASQIEGTAALSAQYNQNMNHNNFSEVAHAISTHSVFSISYNPKASW 305
Query: 128 SEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWRDSKWRC 187
S FI+P ++++ + + IGMRFK R E E+A E+R G I GI D DP RW SKWRC
Sbjct: 306 SNFIIPAPKFLKVVDYPFCIGMRFKARVESEDASERRSPGIISGISDLDPIRWPGSKWRC 365
Query: 188 LKVRWDETSTIPRPERVSLWKIEXXXXXXXXXXXXXXRPKRPRSNMLPSSPDSSVLTREG 247
L VRWD+ +RVS W+IE PKR R PD V EG
Sbjct: 366 LLVRWDDIVANGHQQRVSPWEIEPSGSISNSGSFVTTGPKRSRIGFSSGKPDIPV--SEG 423
Query: 248 SSKLNVDPSSATGFSRVLQGQE 269
+ + S F RVLQGQE
Sbjct: 424 IRATDFEESLR--FQRVLQGQE 443
Score = 53 (23.7 bits), Expect = 7.8e-62, Sum P(2) = 7.8e-62
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 433 LPPSNFENSAHSRELMPKS----AMVQDQEAGKSKDCKLFGIPL 472
LPPS +S+ S L+ S ++D G + C+LFG PL
Sbjct: 517 LPPS--VSSSPSSVLLTNSNSPNGRLEDHHGGSGR-CRLFGFPL 557
>TAIR|locus:2202205 [details] [associations]
symbol:ARF19 "auxin response factor 19" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IEA;IDA;TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0009725 "response to hormone
stimulus" evidence=IEA] [GO:0009733 "response to auxin stimulus"
evidence=RCA;IMP;NAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0048366 "leaf
development" evidence=IGI] [GO:0048527 "lateral root development"
evidence=IGI;RCA] [GO:0009723 "response to ethylene stimulus"
evidence=IMP] [GO:0003677 "DNA binding" evidence=IDA] [GO:0010311
"lateral root formation" evidence=IGI] [GO:0007155 "cell adhesion"
evidence=RCA] [GO:0009741 "response to brassinosteroid stimulus"
evidence=RCA] [GO:0010090 "trichome morphogenesis" evidence=RCA]
[GO:0010583 "response to cyclopentenone" evidence=RCA] [GO:0045010
"actin nucleation" evidence=RCA] [GO:0048765 "root hair cell
differentiation" evidence=RCA] [GO:0071555 "cell wall organization"
evidence=RCA] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0046983 "protein dimerization activity"
evidence=IDA] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009733
GO:GO:0009734 GO:GO:0009723 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0046983 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0010311 GO:GO:0048366 HOGENOM:HOG000241141
EMBL:U53672 EMBL:AY008390 EMBL:AY669794 EMBL:AC069143 EMBL:AB493467
EMBL:AJ441312 IPI:IPI00534870 PIR:G86325 RefSeq:NP_173356.1
UniGene:At.10488 ProteinModelPortal:Q8RYC8 SMR:Q8RYC8 IntAct:Q8RYC8
STRING:Q8RYC8 EnsemblPlants:AT1G19220.1 GeneID:838505
KEGG:ath:AT1G19220 GeneFarm:3421 TAIR:At1g19220 eggNOG:NOG331338
InParanoid:Q8RYC8 OMA:WEIEPVI PhylomeDB:Q8RYC8
ProtClustDB:CLSN2914206 Genevestigator:Q8RYC8 GermOnline:AT1G19220
Uniprot:Q8RYC8
Length = 1086
Score = 639 (230.0 bits), Expect = 9.4e-62, P = 9.4e-62
Identities = 124/246 (50%), Positives = 163/246 (66%)
Query: 5 VFHPWLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDA 64
+F P LD S QPP QE+ AKDLH W FRHI+RGQP+RHLL +GWSVFVS+KRL AGD+
Sbjct: 151 IFPP-LDFSMQPPAQEIVAKDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDS 209
Query: 65 FIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPR 124
+F+R E +L +G+RRA RQ + SSVISS SMH+G+LA A HA + + FT+++ PR
Sbjct: 210 VLFVRDEKSQLMLGIRRANRQTPTLSSSVISSDSMHIGILAAAAHANANSSPFTIFFNPR 269
Query: 125 TSPSEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWRDSK 184
SPSEF+VP +Y +++ S+GMRF+M FE E+ +R+ GT+ GI D DP RW+ S+
Sbjct: 270 ASPSEFVVPLAKYNKALYAQVSLGMRFRMMFETEDCGVRRYMGTVTGISDLDPVRWKGSQ 329
Query: 185 WRCLKVRWDETSTIPRPERVSLWKIEXXXXXXXXXXXXXXRPKRPRSNMLPSSPDSSVLT 244
WR L+V WDE++ RP RVS+W+IE RPK PR P PD L
Sbjct: 330 WRNLQVGWDESTAGDRPSRVSIWEIEPVITPFYICPPPFFRPKYPRQ---PGMPDDE-LD 385
Query: 245 REGSSK 250
E + K
Sbjct: 386 MENAFK 391
>TAIR|locus:2009298 [details] [associations]
symbol:ARF21 "auxin response factor 21" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 HOGENOM:HOG000241141 eggNOG:NOG264447
ProtClustDB:CLSN2681760 EMBL:AC023279 EMBL:AC023913 IPI:IPI00539451
PIR:E86468 RefSeq:NP_174701.2 UniGene:At.51930
ProteinModelPortal:Q9C8N9 SMR:Q9C8N9 EnsemblPlants:AT1G34410.1
GeneID:840344 KEGG:ath:AT1G34410 GeneFarm:3425 TAIR:At1g34410
PhylomeDB:Q9C8N9 Genevestigator:Q9C8N9 GermOnline:AT1G34410
Uniprot:Q9C8N9
Length = 606
Score = 598 (215.6 bits), Expect = 1.3e-61, Sum P(2) = 1.3e-61
Identities = 106/203 (52%), Positives = 150/203 (73%)
Query: 8 PWLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIF 67
P LDMS+ P QE+ A DLH N+WRFRH +RG P+RH L +GW+ F++SK+LV GD +F
Sbjct: 153 PPLDMSQPLPAQEILAIDLHDNQWRFRHNYRGTPQRHSLTTGWNEFITSKKLVKGDVIVF 212
Query: 68 LRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSP 127
+RGE GELRVG+RRA QQGN+PSS++S M GV+A+A HA +F V YKPR+S
Sbjct: 213 VRGETGELRVGIRRARHQQGNIPSSIVSIDCMRHGVIASAKHAFDNQCIFIVVYKPRSS- 271
Query: 128 SEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWRDSKWRC 187
+FIV YD++++++ N +++G RF MRFEG++ E+R+ GTI+G+ D P W+ S+WR
Sbjct: 272 -QFIVSYDKFLDAVNNKFNVGSRFTMRFEGDDFSERRYFGTIIGVSDFSPH-WKCSEWRS 329
Query: 188 LKVRWDETSTIPRPERVSLWKIE 210
L+V+WDE ++ RP +VS W+IE
Sbjct: 330 LEVQWDEFASFSRPNKVSPWEIE 352
Score = 50 (22.7 bits), Expect = 1.3e-61, Sum P(2) = 1.3e-61
Identities = 27/97 (27%), Positives = 41/97 (42%)
Query: 472 LFSNHVMPEPVVSHRNTM-NEPAGNLDQQ----FRAFEXXXXX---XXXXXXXLADDNQV 523
L S V P P +++ N M + N+ + FR F + D
Sbjct: 424 LMSYPVQPMPKLNYNNQMVTQIEENITTKAGTNFRLFGVTLDTPPMIKDPIKQIGSDISK 483
Query: 524 FNEHEKPSQPSQTHTK--DVRSKTQCGSTRSCTKVPL 558
E +K Q SQT +++SK Q S+R+CTKV +
Sbjct: 484 LTERKKFGQ-SQTLRSPIEIQSK-QFSSSRTCTKVQM 518
>TAIR|locus:2152642 [details] [associations]
symbol:ARF8 "auxin response factor 8" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS;TAS]
[GO:0009733 "response to auxin stimulus" evidence=IMP] [GO:0009908
"flower development" evidence=IGI] [GO:0009855 "determination of
bilateral symmetry" evidence=RCA] [GO:0009886 "post-embryonic
morphogenesis" evidence=RCA] [GO:0009887 "organ morphogenesis"
evidence=RCA] [GO:0009909 "regulation of flower development"
evidence=RCA] [GO:0010051 "xylem and phloem pattern formation"
evidence=RCA] [GO:0048439 "flower morphogenesis" evidence=RCA]
[GO:0048481 "ovule development" evidence=RCA] [GO:0048507 "meristem
development" evidence=RCA] [GO:0048519 "negative regulation of
biological process" evidence=RCA] InterPro:IPR003311
InterPro:IPR003340 InterPro:IPR010525 InterPro:IPR011525
Pfam:PF02309 Pfam:PF02362 Pfam:PF06507 PROSITE:PS50863
PROSITE:PS50962 SMART:SM01019 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009733 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0009908 HOGENOM:HOG000241141
ProtClustDB:CLSN2686713 EMBL:AF042196 EMBL:AY669790 EMBL:AB024026
IPI:IPI00525703 IPI:IPI00846789 RefSeq:NP_001078672.1
RefSeq:NP_198518.1 UniGene:At.23446 ProteinModelPortal:Q9FGV1
SMR:Q9FGV1 IntAct:Q9FGV1 STRING:Q9FGV1 PaxDb:Q9FGV1 PRIDE:Q9FGV1
EnsemblPlants:AT5G37020.1 GeneID:833672 KEGG:ath:AT5G37020
GeneFarm:3372 TAIR:At5g37020 eggNOG:NOG292968 InParanoid:Q9FGV1
OMA:NDAYLPA PhylomeDB:Q9FGV1 Genevestigator:Q9FGV1
GermOnline:AT5G37020 Uniprot:Q9FGV1
Length = 811
Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
Identities = 124/236 (52%), Positives = 159/236 (67%)
Query: 5 VFHPWLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDA 64
VF P LD + QPP QEL A+DLH EW+FRHIFRGQP+RHLL +GWSVFVS+KRLVAGD+
Sbjct: 151 VFPP-LDYTLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDS 209
Query: 65 FIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPR 124
IF+R E +L +G+R A R Q VPSSV+SS SMH+G+LA A HA +T + FTV++ PR
Sbjct: 210 VIFIRNEKNQLFLGIRHATRPQTIVPSSVLSSDSMHIGLLAAAAHASATNSCFTVFFHPR 269
Query: 125 TSPSEFIVPYDQYMESI-KNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWRDS 183
S SEF++ +Y++++ S+GMRF+M FE EE+ +R+ GTI GI D D RW +S
Sbjct: 270 ASQSEFVIQLSKYIKAVFHTRISVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNS 329
Query: 184 KWRCLKVRWDETSTIPRPERVSLWKIEXXXXXXXXXXXXXXRPKRPRSNMLPSSPD 239
WR +KV WDE++ R RVSLW+IE R KRP S PD
Sbjct: 330 HWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHAGTSSLPD 385
>TAIR|locus:2035454 [details] [associations]
symbol:MP "MONOPTEROS" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA;ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;IEP]
[GO:0009725 "response to hormone stimulus" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS;TAS] [GO:0009733 "response to auxin
stimulus" evidence=IEP;RCA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0042802 "identical protein binding" evidence=IPI]
[GO:0016020 "membrane" evidence=IDA] [GO:0009790 "embryo
development" evidence=IGI] [GO:0009908 "flower development"
evidence=IGI] [GO:0010305 "leaf vascular tissue pattern formation"
evidence=IGI] [GO:0048364 "root development" evidence=IGI]
[GO:0048507 "meristem development" evidence=IGI;RCA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IDA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=RCA] [GO:0007155 "cell adhesion" evidence=RCA] [GO:0009741
"response to brassinosteroid stimulus" evidence=RCA] [GO:0009855
"determination of bilateral symmetry" evidence=RCA] [GO:0009886
"post-embryonic morphogenesis" evidence=RCA] [GO:0009887 "organ
morphogenesis" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009944 "polarity specification of
adaxial/abaxial axis" evidence=RCA] [GO:0009965 "leaf
morphogenesis" evidence=RCA] [GO:0010014 "meristem initiation"
evidence=RCA] [GO:0010051 "xylem and phloem pattern formation"
evidence=IMP;RCA] [GO:0010073 "meristem maintenance" evidence=RCA]
[GO:0010090 "trichome morphogenesis" evidence=RCA] [GO:0016246 "RNA
interference" evidence=RCA] [GO:0031048 "chromatin silencing by
small RNA" evidence=RCA] [GO:0045010 "actin nucleation"
evidence=RCA] [GO:0048439 "flower morphogenesis" evidence=RCA]
[GO:0048481 "ovule development" evidence=RCA] [GO:0048519 "negative
regulation of biological process" evidence=RCA] [GO:0048527
"lateral root development" evidence=RCA] [GO:0048765 "root hair
cell differentiation" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0071555 "cell wall organization"
evidence=RCA] [GO:0009942 "longitudinal axis specification"
evidence=IMP] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009733
GO:GO:0009734 GO:GO:0016020 GO:GO:0003700 GO:GO:0006351
GO:GO:0048364 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0044212 GO:GO:0009908 GO:GO:0048507
EMBL:AC007797 KO:K14486 EMBL:AF037228 EMBL:AF037229 EMBL:AF334716
EMBL:BT002050 EMBL:BT008805 EMBL:AB199792 EMBL:U79557 EMBL:EF598523
EMBL:EF598524 EMBL:EF598525 EMBL:EF598526 EMBL:EF598527
EMBL:EF598528 EMBL:EF598529 EMBL:EF598530 EMBL:EF598531
EMBL:EF598532 EMBL:EF598533 EMBL:EF598534 EMBL:EF598535
EMBL:EF598536 EMBL:EF598537 EMBL:EF598538 EMBL:EF598539
EMBL:EF598540 EMBL:EF598541 EMBL:EF598542 EMBL:EF598543
EMBL:EF598544 EMBL:EF598545 EMBL:EF598546 IPI:IPI00538603
PIR:G86331 PIR:T51807 RefSeq:NP_173414.1 UniGene:At.10494
UniGene:At.41731 ProteinModelPortal:P93024 SMR:P93024 IntAct:P93024
STRING:P93024 PaxDb:P93024 PRIDE:P93024 EnsemblPlants:AT1G19850.1
GeneID:838573 KEGG:ath:AT1G19850 GeneFarm:3368 TAIR:At1g19850
eggNOG:NOG291711 InParanoid:P93024 OMA:ARYNKAT PhylomeDB:P93024
ProtClustDB:CLSN2682929 Genevestigator:P93024 GermOnline:AT1G19850
GO:GO:0010305 GO:GO:0009942 Uniprot:P93024
Length = 902
Score = 617 (222.3 bits), Expect = 6.0e-60, P = 6.0e-60
Identities = 116/204 (56%), Positives = 147/204 (72%)
Query: 8 PWLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIF 67
P LD S QPPTQEL +DLH N W FRHI+RGQP+RHLL +GWS+FV SKRL AGD+ +F
Sbjct: 185 PPLDYSAQPPTQELVVRDLHENTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLF 244
Query: 68 LRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSP 127
+R E +L VGVRRA RQQ +PSSV+S+ SMH+GVLA A HA + T F ++Y PR P
Sbjct: 245 IRDEKSQLMVGVRRANRQQTALPSSVLSADSMHIGVLAAAAHATANRTPFLIFYNPRACP 304
Query: 128 SEFIVPYDQYMESI-KNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWRDSKWR 186
+EF++P +Y ++I + S+GMRF M FE E++ ++R+ GTIVGI D DP RW SKWR
Sbjct: 305 AEFVIPLAKYRKAICGSQLSVGMRFGMMFETEDSGKRRYMGTIVGISDLDPLRWPGSKWR 364
Query: 187 CLKVRWDETSTIPRPERVSLWKIE 210
L+V WDE +P RVS W IE
Sbjct: 365 NLQVEWDEPGCNDKPTRVSPWDIE 388
>TAIR|locus:2008991 [details] [associations]
symbol:ARF13 "AUXIN RESPONSE FACTOR 13" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006863 "purine nucleobase transport" evidence=RCA]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GO:GO:0005634 GO:GO:0009734 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 IPI:IPI00938986 RefSeq:NP_001154393.1
UniGene:At.51184 ProteinModelPortal:F4HT52 SMR:F4HT52 PRIDE:F4HT52
EnsemblPlants:AT1G34170.3 GeneID:840316 KEGG:ath:AT1G34170
OMA:PEFCNMA ArrayExpress:F4HT52 Uniprot:F4HT52
Length = 546
Score = 369 (135.0 bits), Expect = 2.5e-49, Sum P(3) = 2.5e-49
Identities = 70/119 (58%), Positives = 88/119 (73%)
Query: 8 PWLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSG--WSVFVSSKRLVAGDAF 65
P LDMS+ TQ L AKDL+G EW F+H+FRG P+RH+ SG WSVF ++KRL+ GD F
Sbjct: 151 PPLDMSQPISTQNLVAKDLYGQEWSFKHVFRGTPQRHMFTSGGGWSVFATTKRLIVGDIF 210
Query: 66 IFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPR 124
+ LRGENGELR G+RRA QQG++PSSVIS++ M GV+A+ +A T MF V YKPR
Sbjct: 211 VLLRGENGELRFGIRRAKHQQGHIPSSVISANCMQHGVIASVVNAFKTKCMFNVVYKPR 269
Score = 180 (68.4 bits), Expect = 2.5e-49, Sum P(3) = 2.5e-49
Identities = 31/66 (46%), Positives = 47/66 (71%)
Query: 145 YSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWRDSKWRCLKVRWDETSTIPRPERV 204
+++ + +M+FEG++ E+R+ GTI+G+ D P W+DS+WR LKV+WDE S RP +V
Sbjct: 262 FNVVYKPRMQFEGKDFSEKRYDGTIIGVNDMSPH-WKDSEWRSLKVQWDELSPFLRPNQV 320
Query: 205 SLWKIE 210
S W IE
Sbjct: 321 SPWDIE 326
Score = 40 (19.1 bits), Expect = 2.5e-49, Sum P(3) = 2.5e-49
Identities = 18/66 (27%), Positives = 30/66 (45%)
Query: 412 DYPMLNGNRVEHSHGNWLMPPLPPSNFENSAHSRELMPKSAMVQDQEAGKSKDCKLFGIP 471
D L+G + HS L+ +P N+ NS + + P+ +D + C LFG+
Sbjct: 386 DSKFLSGLLLNHS----LLA-IPNENY-NS--DQMIQPRK---EDITTEATTSCLLFGVD 434
Query: 472 LFSNHV 477
L H+
Sbjct: 435 LTKVHM 440
>TAIR|locus:2057517 [details] [associations]
symbol:ARF10 "auxin response factor 10" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;ISS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0035198 "miRNA binding" evidence=ISS] [GO:0007389 "pattern
specification process" evidence=IDA] [GO:0048829 "root cap
development" evidence=IGI;IMP] [GO:0051301 "cell division"
evidence=IGI] [GO:0009734 "auxin mediated signaling pathway"
evidence=IMP] [GO:0009738 "abscisic acid mediated signaling
pathway" evidence=IMP] [GO:0009743 "response to carbohydrate
stimulus" evidence=IMP] [GO:0010154 "fruit development"
evidence=IMP] [GO:0031540 "regulation of anthocyanin biosynthetic
process" evidence=IMP] [GO:0048366 "leaf development" evidence=IMP]
[GO:0048441 "petal development" evidence=IMP] [GO:0048442 "sepal
development" evidence=IMP] [GO:0048589 "developmental growth"
evidence=IMP] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009738
GO:GO:0009734 GO:GO:0051301 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0048829 GO:GO:0048589 GO:GO:0009743
GO:GO:0048441 GO:GO:0048442 GO:GO:0010154 GO:GO:0035198
GO:GO:0048366 GO:GO:0007389 EMBL:AF099735 EMBL:AC006283
EMBL:AF325073 EMBL:AF336919 EMBL:EU550097 EMBL:EU550098
EMBL:EU550099 EMBL:EU550100 EMBL:EU550101 EMBL:EU550102
EMBL:EU550103 EMBL:EU550104 EMBL:EU550105 EMBL:EU550106
EMBL:EU550107 EMBL:EU550108 EMBL:EU550109 EMBL:EU550110
EMBL:EU550111 EMBL:EU550112 EMBL:EU550113 EMBL:EU550114
EMBL:EU550115 EMBL:EU550116 EMBL:EU550117 EMBL:EU550118
EMBL:EU550119 EMBL:AK228534 IPI:IPI00530405 PIR:G84683
RefSeq:NP_180402.1 UniGene:At.13730 ProteinModelPortal:Q9SKN5
SMR:Q9SKN5 IntAct:Q9SKN5 STRING:Q9SKN5 PRIDE:Q9SKN5
EnsemblPlants:AT2G28350.1 GeneID:817382 KEGG:ath:AT2G28350
GeneFarm:3383 TAIR:At2g28350 eggNOG:NOG315592 InParanoid:Q9SKN5
OMA:ERESGRC PhylomeDB:Q9SKN5 ProtClustDB:CLSN2913131
ArrayExpress:Q9SKN5 Genevestigator:Q9SKN5 GermOnline:AT2G28350
GO:GO:0031540 Uniprot:Q9SKN5
Length = 693
Score = 276 (102.2 bits), Expect = 4.1e-39, Sum P(2) = 4.1e-39
Identities = 48/81 (59%), Positives = 64/81 (79%)
Query: 4 SVFHPWLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGD 63
++F P LD S +PP Q + AKD+HG W+FRHI+RG PRRHLL +GWS FV+ K+L+AGD
Sbjct: 139 TIF-PRLDYSAEPPVQTVIAKDIHGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLIAGD 197
Query: 64 AFIFLRGENGELRVGVRRAMR 84
+ +FLR E+G+L VG+RRA R
Sbjct: 198 SIVFLRSESGDLCVGIRRAKR 218
Score = 218 (81.8 bits), Expect = 4.1e-39, Sum P(2) = 4.1e-39
Identities = 48/145 (33%), Positives = 72/145 (49%)
Query: 67 FLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTS 126
FLR + M++ GN + ++ + + +A A + G F V Y PR S
Sbjct: 237 FLRDDESTTTTSKLMMMKRNGNNDGNAAATGRVRVEAVAEAVARAACGQAFEVVYYPRAS 296
Query: 127 PSEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPE-QRFTGTIVGIEDADPQRWRDSKW 185
EF V +++ + GMRFKM FE E++ F GT+ ++ ADP RW +S W
Sbjct: 297 TPEFCVKAADVRSAMRIRWCSGMRFKMAFETEDSSRISWFMGTVSAVQVADPIRWPNSPW 356
Query: 186 RCLKVRWDETSTIPRPERVSLWKIE 210
R L+V WDE + +RVS W +E
Sbjct: 357 RLLQVAWDEPDLLQNVKRVSPWLVE 381
>TAIR|locus:2126460 [details] [associations]
symbol:ARF16 "auxin response factor 16" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA;IDA] [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=IEA] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0035198 "miRNA binding" evidence=ISS] [GO:0007389 "pattern
specification process" evidence=IDA] [GO:0009733 "response to auxin
stimulus" evidence=IEP] [GO:0048829 "root cap development"
evidence=IGI;IMP] [GO:0051301 "cell division" evidence=IGI]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 GO:GO:0005634
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0009733 GO:GO:0009734
GO:GO:0051301 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
EMBL:AL161576 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0048829 GO:GO:0035198 GO:GO:0007389
HOGENOM:HOG000241141 eggNOG:NOG315592 EMBL:AL078464 EMBL:AY059792
EMBL:AY091198 EMBL:EU550120 EMBL:EU550121 EMBL:EU550122
EMBL:EU550123 EMBL:EU550124 EMBL:EU550125 EMBL:EU550126
EMBL:EU550127 EMBL:EU550128 EMBL:EU550129 EMBL:EU550130
EMBL:EU550131 EMBL:EU550132 EMBL:EU550133 EMBL:EU550134
EMBL:EU550135 EMBL:EU550136 EMBL:EU550137 EMBL:EU550138
EMBL:EU550139 EMBL:EU550140 EMBL:EU550141 EMBL:EU550142
EMBL:EU550143 IPI:IPI00528149 PIR:T08984 RefSeq:NP_567841.1
UniGene:At.3365 ProteinModelPortal:Q93YR9 SMR:Q93YR9 IntAct:Q93YR9
STRING:Q93YR9 EnsemblPlants:AT4G30080.1 GeneID:829131
KEGG:ath:AT4G30080 GeneFarm:3406 TAIR:At4g30080 InParanoid:Q93YR9
OMA:GHAENAY PhylomeDB:Q93YR9 ProtClustDB:CLSN2917636
Genevestigator:Q93YR9 GermOnline:AT4G30080 Uniprot:Q93YR9
Length = 670
Score = 277 (102.6 bits), Expect = 4.9e-38, Sum P(3) = 4.9e-38
Identities = 51/88 (57%), Positives = 68/88 (77%)
Query: 4 SVFHPWLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGD 63
++F P LD + +PP Q + AKD+HG+ W+FRHI+RG PRRHLL +GWS FV+ K+LVAGD
Sbjct: 144 TIF-PRLDYNAEPPVQTILAKDVHGDVWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGD 202
Query: 64 AFIFLRGENGELRVGVRRAMRQQ-GNVP 90
+ +F+R ENG+L VG+RRA R GN P
Sbjct: 203 SIVFMRAENGDLCVGIRRAKRGGIGNGP 230
Score = 196 (74.1 bits), Expect = 4.9e-38, Sum P(3) = 4.9e-38
Identities = 48/138 (34%), Positives = 67/138 (48%)
Query: 103 VLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPE 162
V+ A A+S G F V Y PR S SEF V +++ + GMRFKM FE E++
Sbjct: 276 VIEAATLAIS-GRPFEVVYYPRASTSEFCVKALDARAAMRIPWCSGMRFKMAFETEDSSR 334
Query: 163 -QRFTGTIVGIEDADPQRWRDSKWRCLKVRWDETSTIPRPERVSLWKIEXXXXXXXXXXX 221
F GT+ + +DP RW +S WR L+V WDE + +RV+ W +E
Sbjct: 335 ISWFMGTVSAVNVSDPIRWPNSPWRLLQVAWDEPDLLQNVKRVNPWLVELVSNVHPIPLT 394
Query: 222 XXXRPKRPRSNMLPSSPD 239
P++ LP PD
Sbjct: 395 SFSPPRKKMR--LPQHPD 410
Score = 50 (22.7 bits), Expect = 4.9e-38, Sum P(3) = 4.9e-38
Identities = 26/96 (27%), Positives = 42/96 (43%)
Query: 347 PFADAVPVRKSV-LDQEGKFNLVARPWSLMPSGPSLKMPESNAKVPVQGGDVNYQVRGNV 405
P P RK + L Q +N + + PS PS + S+ V +V ++G
Sbjct: 392 PLTSFSPPRKKMRLPQHPDYNNLINSIPV-PSFPSNPLIRSSPLSSVLD-NVPVGLQG-A 448
Query: 406 RYGGFGDYPMLNGNRVEHSHGNWLMPPLPPSNFENS 441
R+ Y L+ + + H + N PP PPS+ + S
Sbjct: 449 RHNAH-QYYGLSSSDLHHYYLNRPPPPPPPSSLQLS 483
Score = 38 (18.4 bits), Expect = 1.9e-20, Sum P(2) = 1.9e-20
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 226 PKRPRSNMLPSSPDSSVL 243
P P + ++ SSP SSVL
Sbjct: 421 PSFPSNPLIRSSPLSSVL 438
>TAIR|locus:2029436 [details] [associations]
symbol:ARF17 "auxin response factor 17" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0009653 "anatomical structure morphogenesis"
evidence=IMP] [GO:0009734 "auxin mediated signaling pathway"
evidence=TAS] [GO:0048830 "adventitious root development"
evidence=IMP] [GO:0009555 "pollen development" evidence=IMP]
InterPro:IPR003340 InterPro:IPR010525 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0009555
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 GO:GO:0048830 GO:GO:0009653
EMBL:AC009243 EMBL:AC012193 EMBL:AY056184 EMBL:BT002749
EMBL:EU550144 EMBL:EU550145 EMBL:EU550146 EMBL:EU550147
EMBL:EU550148 EMBL:EU550149 EMBL:EU550150 EMBL:EU550151
EMBL:EU550152 EMBL:EU550153 EMBL:EU550154 EMBL:EU550155
EMBL:EU550156 EMBL:EU550157 EMBL:EU550158 EMBL:EU550159
EMBL:EU550160 EMBL:EU550161 EMBL:EU550162 EMBL:EU550163
EMBL:EU550164 EMBL:EU550165 EMBL:EU550166 EMBL:EU550167
IPI:IPI00522722 PIR:D96808 RefSeq:NP_565161.1 UniGene:At.26363
ProteinModelPortal:Q84WU6 SMR:Q84WU6 IntAct:Q84WU6 STRING:Q84WU6
PRIDE:Q84WU6 EnsemblPlants:AT1G77850.1 GeneID:844120
KEGG:ath:AT1G77850 GeneFarm:3413 TAIR:At1g77850 eggNOG:NOG325741
OMA:IWRACAG PhylomeDB:Q84WU6 ProtClustDB:CLSN2689276
Genevestigator:Q84WU6 GermOnline:AT1G77850 Uniprot:Q84WU6
Length = 585
Score = 231 (86.4 bits), Expect = 9.0e-26, Sum P(2) = 9.0e-26
Identities = 43/78 (55%), Positives = 56/78 (71%)
Query: 4 SVFHPWLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGD 63
SVF P L+ PP Q+L D+HG W FRHI+RG PRRHLL +GWS FV+SK+L+AGD
Sbjct: 143 SVF-PLLNFQIDPPVQKLYVTDIHGAVWDFRHIYRGTPRRHLLTTGWSKFVNSKKLIAGD 201
Query: 64 AFIFLRGENGELRVGVRR 81
+ +F+R E+ +GVRR
Sbjct: 202 SVVFMRKSADEMFIGVRR 219
Score = 137 (53.3 bits), Expect = 9.0e-26, Sum P(2) = 9.0e-26
Identities = 46/169 (27%), Positives = 70/169 (41%)
Query: 107 AWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFT 166
A + S G F V + P SEF+V + S+ ++ G R KM E E++ +
Sbjct: 274 AINRASQGLPFEVVFYPAAGWSEFVVRAEDVESSMSMYWTPGTRVKMAMETEDSSRITWF 333
Query: 167 GTIVGIEDADPQRWRDSKWRCLKVRWDETSTIPRPERVSLWKIEXXXXXXXXXXXX--XX 224
IV + WR S W+ L++ WDE + +RV+ W++E
Sbjct: 334 QGIVSSTYQETGPWRGSPWKQLQITWDEPEILQNVKRVNPWQVEIAAHATQLHTPFPPAK 393
Query: 225 RPKRPR-SNMLPSSPDSSVL-TREG-SSKLNVDPS-SATGFSRVLQGQE 269
R K P+ S D +L + G SS DPS S +S G +
Sbjct: 394 RLKYPQPGGGFLSGDDGEILYPQSGLSSAAAPDPSPSMFSYSTFPAGMQ 442
>TAIR|locus:2037169 [details] [associations]
symbol:ARF23 "auxin response factor 23" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] InterPro:IPR003340 Pfam:PF02362 PROSITE:PS50863
SMART:SM01019 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0009734 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:2.40.330.10 InterPro:IPR015300 SUPFAM:SSF101936
HOGENOM:HOG000241141 EMBL:AC022314 IPI:IPI00526589 PIR:E96503
RefSeq:NP_175062.1 UniGene:At.52022 ProteinModelPortal:Q9LP07
SMR:Q9LP07 EnsemblPlants:AT1G43950.1 GeneID:840994
KEGG:ath:AT1G43950 GeneFarm:3427 TAIR:At1g43950 OMA:PTENENQ
PhylomeDB:Q9LP07 Genevestigator:Q9LP07 GermOnline:AT1G43950
Uniprot:Q9LP07
Length = 222
Score = 215 (80.7 bits), Expect = 8.8e-17, P = 8.8e-17
Identities = 42/73 (57%), Positives = 52/73 (71%)
Query: 8 PWLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIF 67
P LDMS+ P QEL A DLHGN+WRF+H +R PR +GW+ F +SK+LV GD +F
Sbjct: 153 PPLDMSQPIPAQELIAIDLHGNQWRFKHSYR-VPRGDT--TGWNAFTTSKKLVVGDVIVF 209
Query: 68 LRGENGELRVGVR 80
RGE GELRVG+R
Sbjct: 210 ARGETGELRVGIR 222
>TAIR|locus:2164215 [details] [associations]
symbol:DPA4 "DEVELOPMENT-RELATED PcG TARGET IN THE APEX
4" species:3702 "Arabidopsis thaliana" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0009062 "fatty acid catabolic
process" evidence=RCA] [GO:0010073 "meristem maintenance"
evidence=IMP] [GO:0010358 "leaf shaping" evidence=IGI] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IMP]
[GO:0048366 "leaf development" evidence=IGI] InterPro:IPR003340
Pfam:PF02362 PROSITE:PS50863 SMART:SM01019 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0045892 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0010073 EMBL:AB006700 GO:GO:0010358
HSSP:Q9ZWM9 HOGENOM:HOG000239355 IPI:IPI00517655 IPI:IPI00891280
RefSeq:NP_001119177.1 RefSeq:NP_196243.2 UniGene:At.54745
ProteinModelPortal:Q9FNI3 SMR:Q9FNI3 EnsemblPlants:AT5G06250.2
GeneID:830512 KEGG:ath:AT5G06250 TAIR:At5g06250 eggNOG:NOG256843
InParanoid:Q9FNI3 OMA:LECQMDE PhylomeDB:Q9FNI3
ProtClustDB:CLSN2702250 Genevestigator:Q9FNI3 Uniprot:Q9FNI3
Length = 282
Score = 119 (46.9 bits), Expect = 0.00024, P = 0.00024
Identities = 36/123 (29%), Positives = 58/123 (47%)
Query: 11 DMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLR- 69
D S L+ +D G WRFR+ + + ++L GWS FV K+L GD F R
Sbjct: 85 DTSSSEKGMLLSFEDESGKSWRFRYSYWNSSQSYVLTKGWSRFVKDKQLDPGDVVFFQRH 144
Query: 70 -GENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVL-ATAWHAVSTGTMFTVYYKPRTSP 127
++ L +G RR R QG+ S ++ +++ + A ++H + T Y S
Sbjct: 145 RSDSRRLFIGWRR--RGQGSSSSVAATNSAVNTSSMGALSYHQIHA----TSNYSNPPSH 198
Query: 128 SEF 130
SE+
Sbjct: 199 SEY 201
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.132 0.407 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 560 534 0.00093 119 3 11 22 0.43 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 22
No. of states in DFA: 628 (67 KB)
Total size of DFA: 340 KB (2169 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 45.69u 0.18s 45.87t Elapsed: 00:00:05
Total cpu time: 45.70u 0.18s 45.88t Elapsed: 00:00:05
Start: Fri May 10 06:19:40 2013 End: Fri May 10 06:19:45 2013