Query 008608
Match_columns 560
No_of_seqs 220 out of 448
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 07:31:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008608.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008608hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 99.8 1.5E-21 5.2E-26 175.3 8.2 85 2-86 35-121 (130)
2 4i1k_A B3 domain-containing tr 99.2 2.4E-11 8.3E-16 111.5 5.8 72 2-83 70-143 (146)
3 1yel_A AT1G16640; CESG, protei 98.8 5E-09 1.7E-13 90.0 6.4 59 19-79 40-98 (104)
4 3cgm_A SLYD, peptidyl-prolyl C 66.9 22 0.00077 32.5 8.6 100 59-174 3-110 (158)
5 2k8i_A SLYD, peptidyl-prolyl C 56.0 51 0.0017 30.5 9.0 103 58-174 2-114 (171)
6 2kfw_A FKBP-type peptidyl-prol 48.2 30 0.001 32.9 6.2 103 58-174 2-114 (196)
7 4dt4_A FKBP-type 16 kDa peptid 47.1 58 0.002 30.3 7.9 105 58-174 24-138 (169)
8 2kr7_A FKBP-type peptidyl-prol 43.7 98 0.0034 27.8 8.7 105 56-174 4-119 (151)
9 3p8d_A Medulloblastoma antigen 39.2 49 0.0017 26.9 5.2 55 141-213 3-57 (67)
10 2e63_A KIAA1787 protein; struc 32.2 28 0.00097 32.4 3.2 23 57-79 116-138 (170)
11 2jng_A Cullin-7, CUL-7; P53 bi 31.9 49 0.0017 29.3 4.4 71 133-216 10-80 (105)
12 3qii_A PHD finger protein 20; 30.0 76 0.0026 27.0 5.1 55 141-213 18-72 (85)
13 3pie_A 5'->3' exoribonuclease 29.7 84 0.0029 37.6 7.2 48 142-197 1063-1110(1155)
14 1mhn_A SurviVal motor neuron p 27.8 68 0.0023 24.5 4.2 29 143-174 2-30 (59)
15 2yue_A Protein neuralized; str 27.1 58 0.002 30.3 4.3 30 50-79 97-126 (168)
16 4a4f_A SurviVal of motor neuro 26.4 64 0.0022 25.1 3.9 43 142-196 6-48 (64)
17 3s6w_A Tudor domain-containing 25.0 70 0.0024 23.9 3.7 28 144-174 1-28 (54)
18 2k1g_A Lipoprotein SPR; soluti 24.3 44 0.0015 30.0 2.9 29 51-80 60-88 (135)
19 2vb2_X Copper protein, cation 23.1 46 0.0016 27.9 2.6 25 56-80 59-85 (88)
20 2qcp_X Cation efflux system pr 22.6 48 0.0017 27.2 2.6 21 56-76 51-72 (80)
21 2cbp_A Cucumber basic protein; 21.6 35 0.0012 28.8 1.6 17 54-70 19-35 (96)
22 3h8z_A FragIle X mental retard 21.2 1.6E+02 0.0056 26.4 6.0 59 114-173 27-90 (128)
23 1g5v_A SurviVal motor neuron p 20.6 1E+02 0.0035 25.9 4.2 43 142-196 8-50 (88)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.84 E-value=1.5e-21 Score=175.32 Aligned_cols=85 Identities=27% Similarity=0.454 Sum_probs=79.1
Q ss_pred cccccCCCCCCCCCCCCceEEEeeCCCCeeEEeEEecCCCCceeeccccceeeecCCCCCCCEEEEEeCC--CCcEEEEE
Q 008608 2 LMSVFHPWLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGE--NGELRVGV 79 (560)
Q Consensus 2 ~Ae~~FPpLD~s~~~Psq~L~~~D~~G~~W~Frhiyrg~prrhlLT~GWs~FV~~KkLvaGDsVvF~R~~--~geL~VGV 79 (560)
+||+|||++|.++..+.++|.++|.+|++|+|+|+||+++++|+|++||+.||++|+|++||.|+|++.+ ++.|+|+|
T Consensus 35 ~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~FV~~~~L~~GD~~~F~~~~~~~~~l~I~~ 114 (130)
T 1wid_A 35 HAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGW 114 (130)
T ss_dssp HHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHHHHHTTCCTTCEEEEEECCSSSCCEEEEE
T ss_pred HHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChHHHHHHcCCCCCCEEEEEEecCCCcEEEEEE
Confidence 6899999999988889999999999999999999999999999999999999999999999999999975 46799999
Q ss_pred Eeecccc
Q 008608 80 RRAMRQQ 86 (560)
Q Consensus 80 RRa~r~~ 86 (560)
||+..+.
T Consensus 115 rr~~~~~ 121 (130)
T 1wid_A 115 KSRSGSD 121 (130)
T ss_dssp ECCCSCS
T ss_pred EECCCCC
Confidence 9987654
No 2
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=99.15 E-value=2.4e-11 Score=111.45 Aligned_cols=72 Identities=18% Similarity=0.331 Sum_probs=61.9
Q ss_pred cccccCCCCCCCCCCCCceEEEeeCCCCeeEEeEEecCCCCceeeccccceeeecCCCCCCCEEEEEeCCCC--cEEEEE
Q 008608 2 LMSVFHPWLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENG--ELRVGV 79 (560)
Q Consensus 2 ~Ae~~FPpLD~s~~~Psq~L~~~D~~G~~W~Frhiyrg~prrhlLT~GWs~FV~~KkLvaGDsVvF~R~~~g--eL~VGV 79 (560)
||+++||+.+ +.+.+.|. |+.|.|+|+|++. +++|++||..||++++|++||.++|...++. .+.|.|
T Consensus 70 Fa~~~lp~~~-------~~i~L~~~-gk~W~v~~~~~~~--~~~ls~GW~~Fv~dn~L~~GD~cvFeli~~~~~~f~V~I 139 (146)
T 4i1k_A 70 FAEKYLSGIS-------GFIKVQLA-EKQWPVRCLYKAG--RAKFSQGWYEFTLENNLGEGDVCVFELLRTRDFVLKVTA 139 (146)
T ss_dssp HHHHHCTTCC-------SEEEEEET-TEEEEEEEEEETT--EEEECTTHHHHHHHTTCCTTCEEEEEECSSSSCEEEEEE
T ss_pred HHHHhCCCCC-------eEEEEEEC-CcEEEEEEEEeCC--cEEECCchHHHHHHcCCCCCCEEEEEEecCCceEEEEEE
Confidence 5788898764 57888887 6999999999984 7999999999999999999999999997765 478888
Q ss_pred Eeec
Q 008608 80 RRAM 83 (560)
Q Consensus 80 RRa~ 83 (560)
-|+.
T Consensus 140 fR~~ 143 (146)
T 4i1k_A 140 FRVN 143 (146)
T ss_dssp ECCC
T ss_pred Eecc
Confidence 7654
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=98.81 E-value=5e-09 Score=89.99 Aligned_cols=59 Identities=25% Similarity=0.491 Sum_probs=53.6
Q ss_pred ceEEEeeCCCCeeEEeEEecCCCCceeeccccceeeecCCCCCCCEEEEEeCCCCcEEEEE
Q 008608 19 QELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGV 79 (560)
Q Consensus 19 q~L~~~D~~G~~W~Frhiyrg~prrhlLT~GWs~FV~~KkLvaGDsVvF~R~~~geL~VGV 79 (560)
..+.++|..|+.|.+++.++. .+.+|+.||..||++++|+.||.++|...++..+.|-|
T Consensus 40 ~~v~L~~~~G~~W~v~~~~~~--~~~~l~~GW~~Fv~~~~L~~GD~lvF~~~~~~~f~V~I 98 (104)
T 1yel_A 40 ITVDLLDYSGRSWTVRMKKRG--EKVFLTVGWENFVKDNNLEDGKYLQFIYDRDRTFYVII 98 (104)
T ss_dssp SEEEEEETTSCEEEEEEEEET--TEEEECTTHHHHHHHHTCCTTCEEEEEECSSSEEEEEE
T ss_pred CEEEEECCCCCEEEEEEEEEC--CcEEEccChHHHHHHcCCCCCCEEEEEEcCCCeEEEEE
Confidence 579999999999999999875 57899999999999999999999999998888877776
No 4
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=66.94 E-value=22 Score=32.46 Aligned_cols=100 Identities=15% Similarity=0.157 Sum_probs=62.5
Q ss_pred CCCCCEEEE-EeC-CCCcEEEEEEeeccccCCCCCccccCCCcchhHHHHHHHHHHcCCeEEEEEecCC------CCCce
Q 008608 59 LVAGDAFIF-LRG-ENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRT------SPSEF 130 (560)
Q Consensus 59 LvaGDsVvF-~R~-~~geL~VGVRRa~r~~~~~p~svis~~~m~l~vLa~A~~aaatgs~F~V~Y~PRa------s~sEF 130 (560)
.+.||.|.+ |.+ .+|+++-.-+ .... +....+ +--+++|......|..++|.--|-. .-.-+
T Consensus 3 i~~gd~V~v~Y~g~~dG~~fdss~--~~f~-------~G~g~v-ipG~e~aL~Gm~~Ge~~~v~ipp~~aYG~~~~~lv~ 72 (158)
T 3cgm_A 3 VGQDKVVTIRYTLQVEGEVLDQGE--LSYL-------HGHRNL-IPGLEEALEGREEGEAFQAHVPAEKAYGPHDPEGVQ 72 (158)
T ss_dssp CCTTEEEEEEEEEEETTEEEEEEE--EEEE-------TTSSSS-CHHHHHHHTTCBTTCEEEEEECGGGTTCCCCGGGEE
T ss_pred CCCCCEEEEEEEEEECCEEEEeeE--EEEE-------ECCCCc-ChHHHHHHcCCCCCCEEEEEECcHHHcCCCCcceEE
Confidence 567888866 322 5777665443 1111 112222 2234566666677888888776532 23457
Q ss_pred eEehhhHHHHhcCCcccccEEEEEecCCCCCCceeeEEEEEeec
Q 008608 131 IVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIED 174 (560)
Q Consensus 131 VVp~~ky~eAl~~~ws~GMRFKM~fE~Edss~~r~~GTI~gi~d 174 (560)
.|+++.|... ..|.+||+|.+.-+ + .+...|+|+.|.+
T Consensus 73 ~v~~~~f~~~--~~~~~G~~~~~~~~--~--G~~~~~~V~~v~~ 110 (158)
T 3cgm_A 73 VVPLSAFPED--AEVVPGAQFYAQDM--E--GNPMPLTVVAVEG 110 (158)
T ss_dssp EEEGGGSCTT--SCCCTTCEEEEEET--T--TEEEEEEEEEEET
T ss_pred EEEHHHCCCC--CCCccCCEEEEECC--C--CCEEEEEEEEECC
Confidence 8999988643 57999999986533 2 1567899999986
No 5
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}
Probab=56.02 E-value=51 Score=30.54 Aligned_cols=103 Identities=21% Similarity=0.248 Sum_probs=62.8
Q ss_pred CCCCCCEEEE-EeC--CCCcEEEEEEeeccccCCCCCcc-ccCCCcchhHHHHHHHHHHcCCeEEEEEecCCC------C
Q 008608 58 RLVAGDAFIF-LRG--ENGELRVGVRRAMRQQGNVPSSV-ISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTS------P 127 (560)
Q Consensus 58 kLvaGDsVvF-~R~--~~geL~VGVRRa~r~~~~~p~sv-is~~~m~l~vLa~A~~aaatgs~F~V~Y~PRas------~ 127 (560)
+.+.||.|.+ |.+ .+|+.+-.-+.. .|... +....+-. -+.+|......|..++|.--|-.. -
T Consensus 2 ~i~~gd~V~v~Y~g~~~dG~~fdss~~~------~P~~f~lG~g~vip-G~eeaL~Gm~~Ge~~~v~ippe~aYG~~~~~ 74 (171)
T 2k8i_A 2 KVAKDLVVSLAYQVRTEDGVLVDESPVS------APLDYLHGHGSLIS-GLETALEGHEVGDKFDVAVGANDAYGQYDEN 74 (171)
T ss_dssp CCCTTEEEEEEEEEEETTSCEEEECCSS------SCEEEETTSCSSCS-HHHHHHTTCCTTCEEEEEEETTTSSCCCCTT
T ss_pred cCCCCCEEEEEEEEEECCCCEEeeccCC------cCEEEEECCCCcch-HHHHHHcCCCCCCEEEEEECcHHhcCCCChh
Confidence 3568898876 332 477766554311 13222 22222322 345666666788888887666432 2
Q ss_pred CceeEehhhHHHHhcCCcccccEEEEEecCCCCCCceeeEEEEEeec
Q 008608 128 SEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIED 174 (560)
Q Consensus 128 sEFVVp~~ky~eAl~~~ws~GMRFKM~fE~Edss~~r~~GTI~gi~d 174 (560)
.-+.||++.|.. ...+.+||+|.+. +++- . ..|+|+.|.+
T Consensus 75 ~v~~v~~~~f~~--~~~~~~G~~~~~~--~~~G--~-~~~~V~~v~~ 114 (171)
T 2k8i_A 75 LVQRVPKDVFMG--VDELQVGMRFLAE--TDQG--P-VPVEITAVED 114 (171)
T ss_dssp SEEEEEGGGGTT--SSCCCTTCEEEEE--ETTE--E-EEEEEEEECS
T ss_pred hEEEeeHHHCCc--ccCccCCcEEEEE--CCCC--c-EEEEEEEEcC
Confidence 346899999864 2478999999854 4332 2 6889998875
No 6
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}
Probab=48.16 E-value=30 Score=32.89 Aligned_cols=103 Identities=22% Similarity=0.279 Sum_probs=62.5
Q ss_pred CCCCCCEEEE-Ee--CCCCcEEEEEEeeccccCCCCCcc-ccCCCcchhHHHHHHHHHHcCCeEEEEEecC------CCC
Q 008608 58 RLVAGDAFIF-LR--GENGELRVGVRRAMRQQGNVPSSV-ISSHSMHLGVLATAWHAVSTGTMFTVYYKPR------TSP 127 (560)
Q Consensus 58 kLvaGDsVvF-~R--~~~geL~VGVRRa~r~~~~~p~sv-is~~~m~l~vLa~A~~aaatgs~F~V~Y~PR------as~ 127 (560)
+.+.||.|.+ |. ..+|+++-.-+. ..|..+ +....+ +--|++|......|..++|+--|- ..-
T Consensus 2 ~i~~gd~V~v~Y~g~~~dG~~fdss~~------~~P~~f~lG~g~v-ipG~eeaL~Gm~vGe~~~v~Ippe~aYGe~~~~ 74 (196)
T 2kfw_A 2 KVAKDLVVSLAYQVRTEDGVLVDESPV------SAPLDYLHGHGSL-ISGLETALEGHEVGDKFDVAVGANDAYGQYDEN 74 (196)
T ss_dssp CCCSSCEEEEEEEEEETTTEEEEECCT------TSCCEEESSSSSS-CHHHHHHHSSSCTTCEEEEECSTTTTSSCCCTT
T ss_pred CCCCCCEEEEEEEEEECCCCEEEecCC------CCCEEEEECCCCc-chHHHHHHcCCCCCCEEEEEeCcHHhcCCCChh
Confidence 3678998876 33 357776554321 123333 222333 233456665667788888876553 233
Q ss_pred CceeEehhhHHHHhcCCcccccEEEEEecCCCCCCceeeEEEEEeec
Q 008608 128 SEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIED 174 (560)
Q Consensus 128 sEFVVp~~ky~eAl~~~ws~GMRFKM~fE~Edss~~r~~GTI~gi~d 174 (560)
.-+.||++.|.. ...+.+||+|.+ ++++ ..+.++|+.|.+
T Consensus 75 lV~~vp~~~f~~--~~~~~~G~~~~~--~~~~---G~~~~~V~~v~~ 114 (196)
T 2kfw_A 75 LVQRVPKDVFMG--VDELQVGMRFLA--ETDQ---GPVPVEITAVED 114 (196)
T ss_dssp TCEEECGGGCCC--SSCCCTTCEEEE--EETT---EEEEEEBCCCCS
T ss_pred hEEEEEHHHCCC--ccCcccCCEEEE--ECCC---CcEEEEEEEEcC
Confidence 457899988853 246899999975 4443 257888888865
No 7
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=47.13 E-value=58 Score=30.25 Aligned_cols=105 Identities=14% Similarity=0.221 Sum_probs=66.3
Q ss_pred CCCCCCEEEE-EeC--CCCcEEEEEEeeccccCCCCCcc-ccCCCcchhHHHHHHHHHHcCCeEEEEEecCCCCC-----
Q 008608 58 RLVAGDAFIF-LRG--ENGELRVGVRRAMRQQGNVPSSV-ISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPS----- 128 (560)
Q Consensus 58 kLvaGDsVvF-~R~--~~geL~VGVRRa~r~~~~~p~sv-is~~~m~l~vLa~A~~aaatgs~F~V~Y~PRas~s----- 128 (560)
....||.|.+ |++ .+|+++-.-+.. +.|... +....+ +--+++|......|..++|..-|-..-.
T Consensus 24 ~i~~gd~V~v~Y~g~l~dG~vfDss~~~-----~~P~~f~lG~g~v-ipG~eeaL~gm~~Ge~~~v~Ipp~~AYG~~~~~ 97 (169)
T 4dt4_A 24 SVQSNSAVLVHFTLKLDDGTTAESTRNN-----GKPALFRLGDASL-SEGLEQHLLGLKVGDKTTFSLEPDAAFGVPSPD 97 (169)
T ss_dssp SCCTTCEEEEEEEEEETTSCEEEEHHHH-----TSCEEEETTSSSS-CHHHHHHHTTCCTTCEEEEEECGGGTTCCCCGG
T ss_pred cCCCCCEEEEEEEEEECCCCEEEecCCC-----CCCEEEEECCCCc-cHHHHHHHcCCCCCCEEEEEEChHHhcCCCChH
Confidence 5789999987 443 578866543211 123322 222222 2345667767788888998876653332
Q ss_pred -ceeEehhhHHHHhcCCcccccEEEEEecCCCCCCceeeEEEEEeec
Q 008608 129 -EFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIED 174 (560)
Q Consensus 129 -EFVVp~~ky~eAl~~~ws~GMRFKM~fE~Edss~~r~~GTI~gi~d 174 (560)
=+.||++.|... ....+||+|.+. +++- ..+.|+|+.|.+
T Consensus 98 lv~~vp~~~f~~~--~~~~~G~~~~~~--~~~G--~~~~~~V~~v~~ 138 (169)
T 4dt4_A 98 LIQYFSRREFMDA--GEPEIGAIMLFT--AMDG--SEMPGVIREING 138 (169)
T ss_dssp GEEEEEGGGGTTT--CCCCTTCEEEEE--CTTS--CEEEEEEEEEET
T ss_pred HEEEeCHHHCCCc--CCCCCCcEEEEE--CCCC--CEEEEEEEEEcC
Confidence 367899988643 457899999864 3331 467899999986
No 8
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=43.73 E-value=98 Score=27.75 Aligned_cols=105 Identities=18% Similarity=0.136 Sum_probs=64.7
Q ss_pred cCCCCCCCEEEE-EeC--C-CCcEEEEEEeeccccCCCCCcc-ccCCCcchhHHHHHHHHHHcCCeEEEEEecC------
Q 008608 56 SKRLVAGDAFIF-LRG--E-NGELRVGVRRAMRQQGNVPSSV-ISSHSMHLGVLATAWHAVSTGTMFTVYYKPR------ 124 (560)
Q Consensus 56 ~KkLvaGDsVvF-~R~--~-~geL~VGVRRa~r~~~~~p~sv-is~~~m~l~vLa~A~~aaatgs~F~V~Y~PR------ 124 (560)
.+..+.||.|.+ |.+ . +|+++-.-+. ..|... +....+ +--+.+|......|..++|.--|-
T Consensus 4 ~~~i~~gd~V~v~Y~g~~~~dG~~fdss~~------~~p~~f~~G~g~v-ipg~e~aL~gm~~Ge~~~v~ipp~~aYG~~ 76 (151)
T 2kr7_A 4 HDLESIKQAALIEYEVREQGSSIVLDSNIS------KEPLEFIIGTNQI-IAGLEKAVLKAQIGEWEEVVIAPEEAYGVY 76 (151)
T ss_dssp CCCTTSCCEEEEEEEEEESSCSCEEEESTT------TCCEEEETTCCCS-CHHHHHHHTTCCBTCEEEEEECGGGTTCSS
T ss_pred ccCCCCCCEEEEEEEEEECCCCCEEEeCCC------CcCEEEEECCCCc-cHHHHHHHcCCCCCCEEEEEEecHHHcCCC
Confidence 355778999876 332 3 7776654421 123222 222223 223456666667888888776553
Q ss_pred CCCCceeEehhhHHHHhcCCcccccEEEEEecCCCCCCceeeEEEEEeec
Q 008608 125 TSPSEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIED 174 (560)
Q Consensus 125 as~sEFVVp~~ky~eAl~~~ws~GMRFKM~fE~Edss~~r~~GTI~gi~d 174 (560)
..-.-+.||+..| . ...+.+||+|.+.-+ +- ....|+|+.|.+
T Consensus 77 ~~~~v~~v~~~~f-~--~~~~~~G~~~~~~~~--~G--~~~~~~V~~v~~ 119 (151)
T 2kr7_A 77 ESSYLQEVPRDQF-E--GIELEKGMSVFGQTE--DN--QTIQAIIKDFSA 119 (151)
T ss_dssp CSCEEEEEEGGGG-T--TSCCCTTCEEEEEET--TT--EEEEEEEEEECS
T ss_pred CcceEEEEcHHHc-C--CCCCccCCEEEEECC--CC--CEEEEEEEEECC
Confidence 2334578999998 2 357999999986543 32 467999999975
No 9
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=39.15 E-value=49 Score=26.88 Aligned_cols=55 Identities=5% Similarity=0.188 Sum_probs=39.7
Q ss_pred hcCCcccccEEEEEecCCCCCCceeeEEEEEeecCCCCCCCCCCceeeEeeecCCCCCCCCCCcccCeeeecC
Q 008608 141 IKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWRDSKWRCLKVRWDETSTIPRPERVSLWKIEPAL 213 (560)
Q Consensus 141 l~~~ws~GMRFKM~fE~Edss~~r~~GTI~gi~d~DP~rWP~S~WR~L~VrWDe~~~~~~~eRVSPWeIEpv~ 213 (560)
|-..|.+|+++-.++ ++ .++|-++|++|... ..+.|..++.. .+.|..=+|-|+.
T Consensus 3 ~~~~~~vGd~vmArW-~D---~~yYpA~I~si~~~----------~~Y~V~F~dG~----~etvk~~~ikp~~ 57 (67)
T 3p8d_A 3 MSSEFQINEQVLACW-SD---CRFYPAKVTAVNKD----------GTYTVKFYDGV----VQTVKHIHVKAFS 57 (67)
T ss_dssp --CCCCTTCEEEEEC-TT---SCEEEEEEEEECTT----------SEEEEEETTSC----EEEEEGGGEEECC
T ss_pred cCcccccCCEEEEEc-CC---CCEeeEEEEEECCC----------CeEEEEEeCCc----eEEEeHHHcccCC
Confidence 456899999999999 32 37999999999862 45899999943 4555555555443
No 10
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.20 E-value=28 Score=32.43 Aligned_cols=23 Identities=39% Similarity=0.404 Sum_probs=21.0
Q ss_pred CCCCCCCEEEEEeCCCCcEEEEE
Q 008608 57 KRLVAGDAFIFLRGENGELRVGV 79 (560)
Q Consensus 57 KkLvaGDsVvF~R~~~geL~VGV 79 (560)
..|..||.|-|++..+|+|++.|
T Consensus 116 ~~l~~Gd~ig~~~~~~G~l~~~i 138 (170)
T 2e63_A 116 DQLGEGDRVGVERTVAGELRLWV 138 (170)
T ss_dssp GGCCSSCCEEEEECTTSCEEEEE
T ss_pred cccCCCCEEEEEEcCCcEEEEEE
Confidence 35689999999999999999998
No 11
>2jng_A Cullin-7, CUL-7; P53 binding domain, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} SCOP: b.34.9.4 PDB: 2juf_A
Probab=31.95 E-value=49 Score=29.27 Aligned_cols=71 Identities=18% Similarity=0.171 Sum_probs=49.4
Q ss_pred ehhhHHHHhcCCcccccEEEEEecCCCCCCceeeEEEEEeecCCCCCCCCCCceeeEeeecCCCCCCCCCCcccCeeeec
Q 008608 133 PYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWRDSKWRCLKVRWDETSTIPRPERVSLWKIEPA 212 (560)
Q Consensus 133 p~~ky~eAl~~~ws~GMRFKM~fE~Edss~~r~~GTI~gi~d~DP~rWP~S~WR~L~VrWDe~~~~~~~eRVSPWeIEpv 212 (560)
..+.|..=++.+..+|||+||.=+-|+-+. -=.|++. ++ .+-. | ..+|.|..... .-.|.-=.||++
T Consensus 10 s~~~Ya~YVr~~l~pGM~VR~~~dyeev~~-GD~G~vl-~s-~~Gl--~-----~vQv~W~~~G~---TyWV~~~~~Ell 76 (105)
T 2jng_A 10 SGNTYALYVRDTLQPGMRVRMLDDYEEISA-GDEGEFR-QS-NNGV--P-----PVQVFWESTGR---TYWVHWHMLEIL 76 (105)
T ss_dssp SSHHHHHHHHHHCCTTCEEEECSCBTTBCT-TCEEEEE-EE-CTTS--S-----EEEEEETTTTE---EEEEEGGGEEEC
T ss_pred cchhHHHHHHhcCCCccEEeeehhhhhhcc-CCceeEE-ec-CCCC--c-----cceeeehhcCc---eEEEEeehhhhc
Confidence 456788888999999999999765555433 3478877 43 2322 2 89999997752 456666678877
Q ss_pred CCCC
Q 008608 213 LAPP 216 (560)
Q Consensus 213 ~s~~ 216 (560)
+.+.
T Consensus 77 g~~~ 80 (105)
T 2jng_A 77 GFEE 80 (105)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 6654
No 12
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=30.01 E-value=76 Score=27.02 Aligned_cols=55 Identities=5% Similarity=0.146 Sum_probs=39.7
Q ss_pred hcCCcccccEEEEEecCCCCCCceeeEEEEEeecCCCCCCCCCCceeeEeeecCCCCCCCCCCcccCeeeecC
Q 008608 141 IKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWRDSKWRCLKVRWDETSTIPRPERVSLWKIEPAL 213 (560)
Q Consensus 141 l~~~ws~GMRFKM~fE~Edss~~r~~GTI~gi~d~DP~rWP~S~WR~L~VrWDe~~~~~~~eRVSPWeIEpv~ 213 (560)
-...|.+|+++-.++ ++ .++|-++|++|... ..+.|.++++. .+.|.+=+|-|+.
T Consensus 18 ~~~~f~vGd~VlArW-~D---~~yYPAkI~sV~~~----------~~YtV~F~DG~----~etvk~~~IKp~~ 72 (85)
T 3qii_A 18 GSSEFQINEQVLACW-SD---CRFYPAKVTAVNKD----------GTYTVKFYDGV----VQTVKHIHVKAFS 72 (85)
T ss_dssp ---CCCTTCEEEEEC-TT---SCEEEEEEEEECTT----------SEEEEEETTSC----EEEEEGGGEEECC
T ss_pred CCcccccCCEEEEEe-CC---CCEeeEEEEEECCC----------CeEEEEEeCCC----eEEecHHHcccCC
Confidence 346899999999999 33 37999999999862 36999999943 4556665665543
No 13
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Probab=29.66 E-value=84 Score=37.56 Aligned_cols=48 Identities=19% Similarity=0.308 Sum_probs=36.7
Q ss_pred cCCcccccEEEEEecCCCCCCceeeEEEEEeecCCCCCCCCCCceeeEeeecCCCC
Q 008608 142 KNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWRDSKWRCLKVRWDETST 197 (560)
Q Consensus 142 ~~~ws~GMRFKM~fE~Edss~~r~~GTI~gi~d~DP~rWP~S~WR~L~VrWDe~~~ 197 (560)
+..|..|+||-|.=+.-..|- --.|||+||..... =.+|+|=||++=.
T Consensus 1063 ~Q~F~LGDRVv~VqdsG~VPl-~~kGTVVGi~~~~~-------~~~ldVvFD~~F~ 1110 (1155)
T 3pie_A 1063 SQRFHLGDRVMYIQDSGKVPL-HSKGTVVGYTSIGK-------NVSIQVLFDNEII 1110 (1155)
T ss_pred CCcccCCCeEEEecCCCCCcc-ccceEEEEEecCCC-------ceEEEEEeccCcc
Confidence 456999999999887765553 34899999986432 3689999999853
No 14
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=27.76 E-value=68 Score=24.45 Aligned_cols=29 Identities=14% Similarity=0.303 Sum_probs=24.0
Q ss_pred CCcccccEEEEEecCCCCCCceeeEEEEEeec
Q 008608 143 NNYSIGMRFKMRFEGEEAPEQRFTGTIVGIED 174 (560)
Q Consensus 143 ~~ws~GMRFKM~fE~Edss~~r~~GTI~gi~d 174 (560)
..|.+|+.+-.+|..+. .||-++|.++..
T Consensus 2 ~~~~~G~~c~A~~s~Dg---~wYrA~I~~i~~ 30 (59)
T 1mhn_A 2 QQWKVGDKCSAIWSEDG---CIYPATIASIDF 30 (59)
T ss_dssp CCCCTTCEEEEECTTTS---CEEEEEEEEEET
T ss_pred CcCCcCCEEEEEECCCC---CEEEEEEEEEcC
Confidence 46999999999995432 799999999964
No 15
>2yue_A Protein neuralized; structure genomics, NEUZ(NHR) domain, structural genomics, NPPSFA; NMR {Drosophila melanogaster}
Probab=27.06 E-value=58 Score=30.28 Aligned_cols=30 Identities=10% Similarity=0.351 Sum_probs=24.1
Q ss_pred cceeeecCCCCCCCEEEEEeCCCCcEEEEE
Q 008608 50 WSVFVSSKRLVAGDAFIFLRGENGELRVGV 79 (560)
Q Consensus 50 Ws~FV~~KkLvaGDsVvF~R~~~geL~VGV 79 (560)
|..-+.++-...||.+.|++..+|+|++.|
T Consensus 97 W~~~l~~~~~~~g~~l~f~v~~~G~l~~~i 126 (168)
T 2yue_A 97 WAKALHEQYCEKDNILYYYVNGAGDVIYGI 126 (168)
T ss_dssp CCEECCSTTCCSSCEEEEEECTTSEEEEEE
T ss_pred EEEEeccccccCCCEEEEEEcCCCEEEEEE
Confidence 555455444478999999999999999998
No 16
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=26.37 E-value=64 Score=25.12 Aligned_cols=43 Identities=9% Similarity=0.276 Sum_probs=32.1
Q ss_pred cCCcccccEEEEEecCCCCCCceeeEEEEEeecCCCCCCCCCCceeeEeeecCCC
Q 008608 142 KNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWRDSKWRCLKVRWDETS 196 (560)
Q Consensus 142 ~~~ws~GMRFKM~fE~Edss~~r~~GTI~gi~d~DP~rWP~S~WR~L~VrWDe~~ 196 (560)
...|.+|+.+..+|..+. .||-++|.+|.... ....|...+-.
T Consensus 6 ~~~~~vGd~c~A~~s~Dg---~wYrA~I~~v~~~~---------~~~~V~fvdYG 48 (64)
T 4a4f_A 6 THSWKVGDKCMAVWSEDG---QCYEAEIEEIDEEN---------GTAAITFAGYG 48 (64)
T ss_dssp SSCCCTTCEEEEECTTTS---SEEEEEEEEEETTT---------TEEEEEETTTT
T ss_pred CCCCCCCCEEEEEECCCC---CEEEEEEEEEcCCC---------CEEEEEEEecC
Confidence 468999999999995432 79999999998521 24567776653
No 17
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=25.01 E-value=70 Score=23.85 Aligned_cols=28 Identities=4% Similarity=0.109 Sum_probs=22.2
Q ss_pred CcccccEEEEEecCCCCCCceeeEEEEEeec
Q 008608 144 NYSIGMRFKMRFEGEEAPEQRFTGTIVGIED 174 (560)
Q Consensus 144 ~ws~GMRFKM~fE~Edss~~r~~GTI~gi~d 174 (560)
.|.+|+.+-..|..+. .||-++|.++..
T Consensus 1 ~wk~G~~c~A~~s~Dg---~wYrA~I~~i~~ 28 (54)
T 3s6w_A 1 MWKPGDECFALYWEDN---KFYRAEVEALHS 28 (54)
T ss_dssp CCCTTCEEEEEETTTT---EEEEEEEEEC--
T ss_pred CCCCCCEEEEEECCCC---CEEEEEEEEEeC
Confidence 4899999999995433 799999999964
No 18
>2k1g_A Lipoprotein SPR; solution structure, bacterial lipoprotein, cysteine PEPT NPLC/P60 family, construct optimized, membrane, palmitate; NMR {Escherichia coli}
Probab=24.35 E-value=44 Score=29.97 Aligned_cols=29 Identities=31% Similarity=0.431 Sum_probs=19.3
Q ss_pred ceeeecCCCCCCCEEEEEeCCCCcEEEEEE
Q 008608 51 SVFVSSKRLVAGDAFIFLRGENGELRVGVR 80 (560)
Q Consensus 51 s~FV~~KkLvaGDsVvF~R~~~geL~VGVR 80 (560)
..-|....|+.||.|.| +.+..--.|||=
T Consensus 60 g~~V~~~~l~pGDLvFf-~~~~~~~HVGIy 88 (135)
T 2k1g_A 60 GKSVSRSNLRTGDLVLF-RAGSTGRHVGIY 88 (135)
T ss_dssp SEEECGGGCCTTEEEEE-EETTTEEEEEEE
T ss_pred CcEecHHHccCCcEEEE-CCCCCCeEEEEE
Confidence 34577789999997765 544333467763
No 19
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=23.11 E-value=46 Score=27.86 Aligned_cols=25 Identities=12% Similarity=0.113 Sum_probs=16.6
Q ss_pred cCCCCCCCEEEEEeC-CCCcEE-EEEE
Q 008608 56 SKRLVAGDAFIFLRG-ENGELR-VGVR 80 (560)
Q Consensus 56 ~KkLvaGDsVvF~R~-~~geL~-VGVR 80 (560)
-++|++||.|.|.-. .+|.+. ..|+
T Consensus 59 l~~lk~Gd~V~F~~~~~~~~~~it~i~ 85 (88)
T 2vb2_X 59 MSEIKTGDKVAFNFVQQGNLSLLQDIK 85 (88)
T ss_dssp ECCCCTTCEEEEEEEEETTEEEEEEEE
T ss_pred hhcCCCCCEEEEEEEEeCCEEEEEEEE
Confidence 467999999999653 345543 3443
No 20
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=22.60 E-value=48 Score=27.20 Aligned_cols=21 Identities=14% Similarity=0.064 Sum_probs=14.9
Q ss_pred cCCCCCCCEEEEEeC-CCCcEE
Q 008608 56 SKRLVAGDAFIFLRG-ENGELR 76 (560)
Q Consensus 56 ~KkLvaGDsVvF~R~-~~geL~ 76 (560)
-++|++||.|.|.-. .+|.+.
T Consensus 51 l~~lk~Gd~V~F~~~~~~~~~~ 72 (80)
T 2qcp_X 51 MSEIKTGDKVAFNFVQQGNLSL 72 (80)
T ss_dssp ECCCCTTCEEEEEEEEETTEEE
T ss_pred hhcCCCCCEEEEEEEEeCCEEE
Confidence 467999999999653 345543
No 21
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1
Probab=21.60 E-value=35 Score=28.82 Aligned_cols=17 Identities=35% Similarity=0.528 Sum_probs=14.2
Q ss_pred eecCCCCCCCEEEEEeC
Q 008608 54 VSSKRLVAGDAFIFLRG 70 (560)
Q Consensus 54 V~~KkLvaGDsVvF~R~ 70 (560)
...|+..+||+|+|-=.
T Consensus 19 a~~~~f~vGD~L~F~y~ 35 (96)
T 2cbp_A 19 PKGKRFRAGDILLFNYN 35 (96)
T ss_dssp TTTCCBCTTCEEEEECC
T ss_pred ccCceEcCCCEEEEEec
Confidence 56788999999999754
No 22
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=21.24 E-value=1.6e+02 Score=26.41 Aligned_cols=59 Identities=12% Similarity=0.209 Sum_probs=39.5
Q ss_pred CCeEEEEEecCCCCCceeEehhhHHH----HhcCCcccccEEEEEecCCC-CCCceeeEEEEEee
Q 008608 114 GTMFTVYYKPRTSPSEFIVPYDQYME----SIKNNYSIGMRFKMRFEGEE-APEQRFTGTIVGIE 173 (560)
Q Consensus 114 gs~F~V~Y~PRas~sEFVVp~~ky~e----Al~~~ws~GMRFKM~fE~Ed-ss~~r~~GTI~gi~ 173 (560)
...++|.|.-- -.++-.||.+.+.- +.+..+++|+.|......+| .+-.||.|+|..+.
T Consensus 27 ~d~~~V~f~n~-w~~~~~vp~~~vRlpP~~~~~~~f~~gd~VEV~~~~~d~ep~gWw~a~I~~~k 90 (128)
T 3h8z_A 27 EDSVTIFFENN-WQSERQIPFGDVRLPPPADYNKEITEGDEVEVYSRANEQEPCGWWLARVRMMK 90 (128)
T ss_dssp SSEEEEEETTC-TTCCEEEEGGGEECCCCC----CCCTTCEEEEEECC---CCCEEEEEEEEEEE
T ss_pred CCcEEEEEccc-cCcceEechhhEEcCCCcccccCCCCCCEEEEEecCCCCCcCccEEEEEEEee
Confidence 34578888542 12477888777653 33467999999999887655 33379999999997
No 23
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=20.57 E-value=1e+02 Score=25.93 Aligned_cols=43 Identities=12% Similarity=0.183 Sum_probs=31.0
Q ss_pred cCCcccccEEEEEecCCCCCCceeeEEEEEeecCCCCCCCCCCceeeEeeecCCC
Q 008608 142 KNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWRDSKWRCLKVRWDETS 196 (560)
Q Consensus 142 ~~~ws~GMRFKM~fE~Edss~~r~~GTI~gi~d~DP~rWP~S~WR~L~VrWDe~~ 196 (560)
...|.+|+.+...|..+. .||-++|.+|.... ....|...+=.
T Consensus 8 ~~~~kvGd~C~A~ys~Dg---~wYrA~I~~i~~~~---------~~~~V~fiDYG 50 (88)
T 1g5v_A 8 LQQWKVGDKCSAIWSEDG---CIYPATIASIDFKR---------ETCVVVYTGYG 50 (88)
T ss_dssp -CCCCSSCEEEEECTTTC---CEEEEEEEEEETTT---------TEEEEEETTTC
T ss_pred cCCCCCCCEEEEEECCCC---CEEEEEEEEecCCC---------CEEEEEEecCC
Confidence 357999999999995432 79999999997521 24567775544
Done!