Query 008611
Match_columns 559
No_of_seqs 502 out of 3183
Neff 9.0
Searched_HMMs 46136
Date Thu Mar 28 14:20:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008611.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008611hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02193 nitrile-specifier pro 100.0 1.8E-37 3.9E-42 329.5 34.2 256 171-457 151-419 (470)
2 PLN02153 epithiospecifier prot 100.0 2.8E-37 6E-42 316.5 33.1 258 170-456 6-292 (341)
3 KOG4441 Proteins containing BT 100.0 7.2E-38 1.6E-42 336.5 28.4 254 161-458 297-556 (571)
4 KOG4693 Uncharacterized conser 100.0 3.9E-38 8.4E-43 288.5 21.1 256 184-457 12-285 (392)
5 PLN02153 epithiospecifier prot 100.0 1.3E-36 2.7E-41 311.7 33.2 259 166-448 51-339 (341)
6 PLN02193 nitrile-specifier pro 100.0 1.5E-36 3.2E-41 322.6 33.6 255 166-449 194-469 (470)
7 KOG1230 Protein containing rep 100.0 3.8E-38 8.2E-43 304.6 18.2 250 181-458 62-350 (521)
8 KOG4693 Uncharacterized conser 100.0 1.8E-37 3.9E-42 284.1 19.5 236 172-435 55-312 (392)
9 PHA02713 hypothetical protein; 100.0 3.3E-36 7.2E-41 325.1 27.3 244 166-455 273-540 (557)
10 KOG0379 Kelch repeat-containin 100.0 7.2E-36 1.6E-40 316.3 27.6 263 169-459 43-312 (482)
11 PHA03098 kelch-like protein; P 100.0 4.3E-33 9.3E-38 302.9 29.9 241 172-457 275-520 (534)
12 KOG4441 Proteins containing BT 100.0 1.6E-32 3.6E-37 295.1 25.9 233 182-456 272-507 (571)
13 TIGR03548 mutarot_permut cycli 100.0 5E-32 1.1E-36 275.6 26.6 225 172-435 52-313 (323)
14 KOG0379 Kelch repeat-containin 100.0 5.7E-32 1.2E-36 286.6 26.2 254 172-449 99-358 (482)
15 TIGR03547 muta_rot_YjhT mutatr 100.0 3.9E-31 8.5E-36 271.9 27.6 234 171-446 41-344 (346)
16 PRK14131 N-acetylneuraminic ac 100.0 7.8E-31 1.7E-35 271.9 27.3 241 171-453 62-373 (376)
17 TIGR03548 mutarot_permut cycli 100.0 1.7E-30 3.7E-35 264.3 28.6 238 184-456 2-287 (323)
18 PHA02790 Kelch-like protein; P 100.0 1.2E-30 2.5E-35 278.2 28.1 209 191-454 267-476 (480)
19 KOG4152 Host cell transcriptio 100.0 1.3E-30 2.7E-35 257.8 17.9 257 172-457 18-311 (830)
20 KOG4152 Host cell transcriptio 100.0 2E-30 4.2E-35 256.4 18.6 258 164-447 56-362 (830)
21 TIGR03547 muta_rot_YjhT mutatr 100.0 3.5E-29 7.6E-34 257.4 27.9 233 181-456 3-306 (346)
22 PHA02713 hypothetical protein; 100.0 2.4E-29 5.2E-34 271.8 27.7 222 197-460 259-502 (557)
23 KOG1230 Protein containing rep 100.0 8E-30 1.7E-34 247.0 17.5 209 172-392 109-350 (521)
24 PHA03098 kelch-like protein; P 100.0 1.2E-28 2.5E-33 268.2 26.3 202 166-390 312-519 (534)
25 PTZ00458 acyl CoA binding prot 100.0 3.6E-30 7.7E-35 203.6 8.2 88 13-108 2-89 (90)
26 PRK14131 N-acetylneuraminic ac 100.0 7.4E-28 1.6E-32 249.6 26.7 239 172-455 18-327 (376)
27 cd00435 ACBP Acyl CoA binding 100.0 1.9E-29 4.2E-34 199.5 7.8 84 12-105 1-84 (85)
28 PHA02790 Kelch-like protein; P 100.0 2.9E-27 6.3E-32 252.1 24.6 188 165-390 287-478 (480)
29 PF00887 ACBP: Acyl CoA bindin 99.9 4.8E-28 1E-32 194.8 4.7 86 12-105 1-86 (87)
30 KOG0817 Acyl-CoA-binding prote 99.9 2E-27 4.2E-32 203.3 8.4 95 10-114 3-97 (142)
31 COG4281 ACB Acyl-CoA-binding p 99.9 1.1E-25 2.4E-30 164.1 6.5 84 12-105 2-85 (87)
32 COG3055 Uncharacterized protei 99.7 2.2E-16 4.7E-21 152.4 19.2 238 172-448 71-374 (381)
33 KOG2437 Muskelin [Signal trans 99.7 9E-18 1.9E-22 166.9 7.1 274 160-453 228-539 (723)
34 COG3055 Uncharacterized protei 99.6 1.7E-14 3.6E-19 139.5 20.3 240 181-459 32-338 (381)
35 KOG2437 Muskelin [Signal trans 99.5 8.5E-15 1.8E-19 146.0 6.3 209 219-446 237-469 (723)
36 KOG3878 Protein involved in ma 99.3 4E-12 8.6E-17 120.4 6.1 95 8-109 28-125 (469)
37 PLN02772 guanylate kinase 99.1 5.3E-10 1.2E-14 112.9 11.6 90 293-384 21-110 (398)
38 PF13964 Kelch_6: Kelch motif 99.1 1.9E-10 4E-15 82.4 5.9 45 185-229 1-46 (50)
39 PF13964 Kelch_6: Kelch motif 99.1 3.4E-10 7.3E-15 81.0 6.3 50 245-297 1-50 (50)
40 PLN02772 guanylate kinase 98.9 6.7E-09 1.5E-13 105.0 11.5 89 243-334 22-111 (398)
41 PF01344 Kelch_1: Kelch motif; 98.9 2.9E-09 6.3E-14 75.1 5.8 45 185-229 1-46 (47)
42 PF13415 Kelch_3: Galactose ox 98.9 3.2E-09 7E-14 75.5 5.8 48 306-356 1-49 (49)
43 PF13415 Kelch_3: Galactose ox 98.9 3.9E-09 8.4E-14 75.1 6.1 47 358-407 1-49 (49)
44 PF07646 Kelch_2: Kelch motif; 98.9 5.5E-09 1.2E-13 74.3 5.9 45 185-229 1-48 (49)
45 PF01344 Kelch_1: Kelch motif; 98.8 7.1E-09 1.5E-13 73.0 5.5 45 245-289 1-45 (47)
46 PF07646 Kelch_2: Kelch motif; 98.8 1.8E-08 4E-13 71.6 6.1 45 245-289 1-47 (49)
47 PF13854 Kelch_5: Kelch motif 98.7 2.7E-08 5.8E-13 68.1 5.5 40 182-221 1-42 (42)
48 PF13418 Kelch_4: Galactose ox 98.7 1.3E-08 2.8E-13 72.4 4.1 43 347-389 1-44 (49)
49 PF13418 Kelch_4: Galactose ox 98.7 1.5E-08 3.2E-13 72.1 4.3 44 245-288 1-45 (49)
50 PF03089 RAG2: Recombination a 98.6 4E-06 8.6E-11 79.4 18.5 163 257-437 40-231 (337)
51 PF13854 Kelch_5: Kelch motif 98.5 1.7E-07 3.6E-12 64.1 5.5 41 293-333 1-42 (42)
52 smart00612 Kelch Kelch domain. 98.4 3.2E-07 7E-12 64.3 4.3 47 197-256 1-47 (47)
53 PF07250 Glyoxal_oxid_N: Glyox 98.4 2.5E-05 5.5E-10 74.8 17.7 148 211-390 46-206 (243)
54 smart00612 Kelch Kelch domain. 98.4 7.4E-07 1.6E-11 62.4 5.0 46 360-408 1-46 (47)
55 PF03089 RAG2: Recombination a 98.0 0.00012 2.6E-09 69.5 12.3 124 293-434 19-173 (337)
56 TIGR01640 F_box_assoc_1 F-box 97.8 0.0099 2.1E-07 57.2 22.8 161 211-390 14-185 (230)
57 PF07250 Glyoxal_oxid_N: Glyox 97.7 0.0022 4.7E-08 61.6 15.9 86 274-368 48-138 (243)
58 TIGR01640 F_box_assoc_1 F-box 97.5 0.01 2.2E-07 57.1 19.0 154 209-384 68-230 (230)
59 PF12768 Rax2: Cortical protei 96.5 0.042 9.1E-07 54.2 12.4 124 260-391 2-130 (281)
60 PF12768 Rax2: Cortical protei 96.3 0.24 5.1E-06 48.9 16.8 122 200-340 2-130 (281)
61 PF07893 DUF1668: Protein of u 96.3 0.99 2.1E-05 46.2 21.9 120 192-339 73-215 (342)
62 PF07893 DUF1668: Protein of u 96.3 0.14 3E-06 52.4 15.5 127 254-401 75-223 (342)
63 PF13360 PQQ_2: PQQ-like domai 96.2 1.2 2.7E-05 42.5 26.9 187 191-451 32-233 (238)
64 PRK11138 outer membrane biogen 96.0 2.4 5.1E-05 44.4 25.9 177 172-388 47-231 (394)
65 PRK11138 outer membrane biogen 96.0 1.9 4.2E-05 45.0 23.1 157 188-388 113-282 (394)
66 TIGR02800 propeller_TolB tol-p 95.7 3.1 6.8E-05 43.6 23.0 147 211-390 214-362 (417)
67 PF08450 SGL: SMP-30/Gluconola 95.2 2.6 5.5E-05 40.8 18.9 164 195-390 51-221 (246)
68 TIGR03300 assembly_YfgL outer 95.1 4.8 0.0001 41.6 24.7 149 189-388 59-216 (377)
69 smart00295 B41 Band 4.1 homolo 94.9 0.044 9.5E-07 51.6 5.6 70 36-106 113-203 (207)
70 KOG2055 WD40 repeat protein [G 94.9 1.1 2.4E-05 46.0 15.3 153 195-385 224-377 (514)
71 PF00373 FERM_M: FERM central 94.8 0.05 1.1E-06 46.7 5.1 81 15-106 14-122 (126)
72 cd00094 HX Hemopexin-like repe 94.5 3.4 7.3E-05 38.5 17.1 156 190-385 11-178 (194)
73 TIGR03866 PQQ_ABC_repeats PQQ- 94.3 5.7 0.00012 38.9 21.6 143 197-385 2-148 (300)
74 PTZ00421 coronin; Provisional 94.2 9.9 0.00021 41.0 26.8 39 513-551 445-483 (493)
75 PF08450 SGL: SMP-30/Gluconola 93.9 6.4 0.00014 38.0 20.1 148 195-383 11-165 (246)
76 PTZ00420 coronin; Provisional 93.7 13 0.00028 40.7 22.8 115 255-389 178-300 (568)
77 KOG0646 WD40 repeat protein [G 93.6 9.6 0.00021 39.4 18.9 32 187-222 83-114 (476)
78 PRK04922 tolB translocation pr 93.6 11 0.00025 39.8 23.3 146 211-390 228-376 (433)
79 PRK04792 tolB translocation pr 93.5 12 0.00027 39.8 23.9 146 211-390 242-390 (448)
80 KOG2055 WD40 repeat protein [G 93.3 1.3 2.8E-05 45.5 12.1 110 195-335 269-378 (514)
81 PRK05137 tolB translocation pr 93.1 14 0.0003 39.2 22.4 146 211-389 226-373 (435)
82 PF12217 End_beta_propel: Cata 92.9 9.1 0.0002 36.7 18.6 168 187-366 76-257 (367)
83 cd00216 PQQ_DH Dehydrogenases 92.9 16 0.00035 39.4 25.4 130 187-338 53-192 (488)
84 TIGR02800 propeller_TolB tol-p 92.8 14 0.0003 38.7 21.6 117 255-390 200-318 (417)
85 PF08268 FBA_3: F-box associat 92.6 3 6.5E-05 35.9 12.2 87 252-340 2-89 (129)
86 PRK00178 tolB translocation pr 92.4 17 0.00036 38.4 23.5 146 211-390 223-371 (430)
87 PRK04043 tolB translocation pr 92.3 17 0.00037 38.3 23.1 148 211-390 213-365 (419)
88 KOG2321 WD40 repeat protein [G 92.1 4.3 9.3E-05 43.1 14.3 75 295-385 132-208 (703)
89 PF13360 PQQ_2: PQQ-like domai 91.9 12 0.00025 35.6 22.1 153 191-387 72-237 (238)
90 PF09910 DUF2139: Uncharacteri 91.7 14 0.00031 36.3 18.5 106 209-335 76-185 (339)
91 PF12217 End_beta_propel: Cata 91.5 14 0.00029 35.6 16.5 115 250-368 195-334 (367)
92 PRK04792 tolB translocation pr 91.3 23 0.00049 37.8 22.5 104 272-390 242-346 (448)
93 TIGR03300 assembly_YfgL outer 91.1 21 0.00045 36.9 23.7 154 191-388 101-267 (377)
94 PRK13684 Ycf48-like protein; P 91.0 20 0.00043 36.5 19.8 172 172-390 120-296 (334)
95 PF08826 DMPK_coil: DMPK coile 90.8 1.3 2.9E-05 32.5 6.6 28 526-553 30-57 (61)
96 PF12329 TMF_DNA_bd: TATA elem 90.7 0.84 1.8E-05 35.2 5.8 51 507-557 5-55 (74)
97 PRK04922 tolB translocation pr 90.6 26 0.00056 37.1 21.4 105 271-390 227-332 (433)
98 PF08268 FBA_3: F-box associat 90.1 11 0.00024 32.3 13.3 87 192-289 2-89 (129)
99 PF05096 Glu_cyclase_2: Glutam 89.2 10 0.00022 36.9 13.2 111 250-385 49-160 (264)
100 PRK03629 tolB translocation pr 88.6 36 0.00078 36.0 23.0 148 211-390 223-371 (429)
101 PRK02889 tolB translocation pr 88.6 36 0.00078 36.0 22.9 147 211-390 220-368 (427)
102 PRK13729 conjugal transfer pil 88.5 0.78 1.7E-05 47.9 5.5 48 510-557 72-119 (475)
103 TIGR03075 PQQ_enz_alc_DH PQQ-d 88.5 42 0.00091 36.6 23.7 129 189-338 63-198 (527)
104 PF05096 Glu_cyclase_2: Glutam 88.2 20 0.00043 34.9 14.5 156 191-388 50-209 (264)
105 PRK13684 Ycf48-like protein; P 87.9 34 0.00073 34.9 19.7 171 172-390 77-252 (334)
106 cd00094 HX Hemopexin-like repe 87.6 24 0.00051 32.8 17.4 112 251-386 12-131 (194)
107 PF14282 FlxA: FlxA-like prote 87.2 1.1 2.3E-05 37.3 4.6 44 512-555 24-71 (106)
108 TIGR03075 PQQ_enz_alc_DH PQQ-d 87.0 51 0.0011 36.0 21.3 123 250-389 64-198 (527)
109 PF02191 OLF: Olfactomedin-lik 86.8 32 0.0007 33.4 17.4 161 182-365 65-237 (250)
110 PF02191 OLF: Olfactomedin-lik 86.0 35 0.00076 33.2 19.3 185 195-409 30-228 (250)
111 PLN00033 photosystem II stabil 85.6 50 0.0011 34.6 20.9 183 172-390 167-364 (398)
112 KOG0310 Conserved WD40 repeat- 85.6 11 0.00023 39.3 11.5 112 253-387 77-190 (487)
113 PRK00178 tolB translocation pr 85.3 53 0.0011 34.6 23.1 104 271-390 222-327 (430)
114 TIGR03866 PQQ_ABC_repeats PQQ- 85.3 38 0.00082 32.9 22.9 147 195-386 42-191 (300)
115 PF04111 APG6: Autophagy prote 84.8 1.7 3.6E-05 43.8 5.5 47 510-556 46-92 (314)
116 PRK11028 6-phosphogluconolacto 83.9 51 0.0011 33.2 21.2 157 195-388 46-213 (330)
117 PF06156 DUF972: Protein of un 83.8 2.9 6.3E-05 34.7 5.5 48 509-556 10-57 (107)
118 COG3167 PilO Tfp pilus assembl 83.7 3.6 7.7E-05 37.3 6.3 47 512-558 47-96 (211)
119 PRK10884 SH3 domain-containing 83.2 2.7 5.9E-05 39.4 5.8 42 515-556 126-167 (206)
120 COG3074 Uncharacterized protei 83.1 5.3 0.00012 29.6 5.9 16 516-531 20-35 (79)
121 PF02897 Peptidase_S9_N: Proly 82.9 65 0.0014 33.7 18.1 215 195-458 134-368 (414)
122 PRK10884 SH3 domain-containing 82.8 3 6.6E-05 39.1 5.9 41 517-557 121-161 (206)
123 PRK05137 tolB translocation pr 82.8 69 0.0015 33.9 21.2 104 272-390 226-330 (435)
124 PF08826 DMPK_coil: DMPK coile 82.4 5.9 0.00013 29.1 6.0 39 520-558 10-48 (61)
125 PRK11028 6-phosphogluconolacto 82.3 58 0.0013 32.7 20.5 146 197-383 3-157 (330)
126 PF09304 Cortex-I_coil: Cortex 82.3 2.4 5.2E-05 34.7 4.3 47 511-557 27-73 (107)
127 PF14282 FlxA: FlxA-like prote 82.1 3.4 7.5E-05 34.3 5.4 26 526-551 49-74 (106)
128 PLN02919 haloacid dehalogenase 81.9 1.2E+02 0.0027 36.2 26.5 180 189-390 627-841 (1057)
129 PRK13169 DNA replication intia 81.8 3.2 7E-05 34.5 5.1 46 509-554 10-55 (110)
130 PF13088 BNR_2: BNR repeat-lik 81.7 46 0.001 32.4 14.5 224 172-407 31-267 (275)
131 smart00284 OLF Olfactomedin-li 81.5 54 0.0012 31.9 17.0 71 255-337 34-108 (255)
132 KOG2264 Exostosin EXT1L [Signa 81.5 1.2 2.5E-05 46.9 2.9 48 510-557 103-150 (907)
133 KOG0310 Conserved WD40 repeat- 81.5 74 0.0016 33.4 17.1 151 194-389 121-273 (487)
134 PF05377 FlaC_arch: Flagella a 81.5 5.8 0.00013 28.4 5.5 43 510-552 3-45 (55)
135 PRK11637 AmiB activator; Provi 81.1 2 4.3E-05 45.5 4.6 32 520-551 81-112 (428)
136 PRK11637 AmiB activator; Provi 80.8 2.1 4.5E-05 45.4 4.6 45 511-555 79-123 (428)
137 KOG3530 FERM domain protein EH 80.8 1.9 4.1E-05 45.9 4.1 66 36-101 118-195 (616)
138 PF04859 DUF641: Plant protein 80.8 4.7 0.0001 34.7 5.9 54 505-558 78-131 (131)
139 PRK02889 tolB translocation pr 80.7 80 0.0017 33.3 20.2 104 272-390 220-324 (427)
140 PF05377 FlaC_arch: Flagella a 79.3 9.3 0.0002 27.4 5.9 39 516-554 2-40 (55)
141 PF02897 Peptidase_S9_N: Proly 79.3 86 0.0019 32.8 19.2 195 210-452 201-408 (414)
142 PF11932 DUF3450: Protein of u 79.2 2.9 6.4E-05 40.7 4.8 40 517-556 52-91 (251)
143 PF10282 Lactonase: Lactonase, 79.1 79 0.0017 32.3 17.5 169 187-390 145-332 (345)
144 PF10481 CENP-F_N: Cenp-F N-te 79.0 3 6.5E-05 39.9 4.5 52 508-559 19-70 (307)
145 PRK04406 hypothetical protein; 78.9 7 0.00015 30.2 5.8 28 524-551 28-55 (75)
146 COG3074 Uncharacterized protei 78.9 4.9 0.00011 29.8 4.5 35 518-552 36-70 (79)
147 PF00170 bZIP_1: bZIP transcri 78.8 8.1 0.00018 28.7 6.0 42 517-558 22-63 (64)
148 KOG1036 Mitotic spindle checkp 78.7 72 0.0016 31.6 14.2 130 254-413 63-203 (323)
149 PHA02047 phage lambda Rz1-like 78.0 8.1 0.00018 30.8 5.8 29 515-543 35-63 (101)
150 PF10205 KLRAQ: Predicted coil 77.6 9.5 0.00021 31.1 6.3 48 511-558 23-70 (102)
151 PRK03629 tolB translocation pr 77.5 1E+02 0.0022 32.6 22.6 104 272-390 223-327 (429)
152 PTZ00421 coronin; Provisional 77.5 1.1E+02 0.0024 33.1 26.5 43 509-551 448-490 (493)
153 COG3883 Uncharacterized protei 77.1 3.5 7.6E-05 39.9 4.4 38 514-551 59-96 (265)
154 PF08317 Spc7: Spc7 kinetochor 76.9 3.4 7.4E-05 41.9 4.6 44 513-556 222-265 (325)
155 PF08912 Rho_Binding: Rho Bind 76.6 7.9 0.00017 29.1 5.2 42 516-557 5-46 (69)
156 PRK09039 hypothetical protein; 76.5 5 0.00011 41.0 5.7 43 516-558 139-181 (343)
157 cd00200 WD40 WD40 domain, foun 76.4 68 0.0015 30.1 21.1 105 255-384 62-167 (289)
158 PF06433 Me-amine-dh_H: Methyl 75.7 88 0.0019 31.8 14.0 116 196-337 3-132 (342)
159 PF04201 TPD52: Tumour protein 75.7 6.5 0.00014 34.9 5.3 17 539-555 47-63 (162)
160 smart00338 BRLZ basic region l 75.5 8.5 0.00018 28.6 5.4 37 521-557 26-62 (65)
161 cd00216 PQQ_DH Dehydrogenases 75.3 1.2E+02 0.0027 32.6 25.0 18 270-287 254-273 (488)
162 PF13815 Dzip-like_N: Iguana/D 75.2 8.6 0.00019 32.6 5.9 42 517-558 76-117 (118)
163 PRK13729 conjugal transfer pil 74.9 5.8 0.00013 41.7 5.6 44 509-552 78-121 (475)
164 PF03178 CPSF_A: CPSF A subuni 74.9 97 0.0021 31.1 16.0 130 196-359 42-185 (321)
165 COG3883 Uncharacterized protei 74.7 8.4 0.00018 37.3 6.3 45 512-556 50-94 (265)
166 PHA02047 phage lambda Rz1-like 74.6 9.1 0.0002 30.5 5.3 42 517-558 30-71 (101)
167 PLN02919 haloacid dehalogenase 74.4 2E+02 0.0043 34.5 22.6 169 195-385 694-891 (1057)
168 COG4946 Uncharacterized protei 74.4 1.2E+02 0.0026 32.0 16.4 211 209-457 57-304 (668)
169 PRK01742 tolB translocation pr 74.4 1.2E+02 0.0026 32.0 21.7 139 211-390 228-369 (429)
170 PF07334 IFP_35_N: Interferon- 74.2 4.6 9.9E-05 31.0 3.5 6 519-524 12-17 (76)
171 PF14870 PSII_BNR: Photosynthe 74.2 1E+02 0.0022 31.0 21.4 202 172-435 48-253 (302)
172 PF04102 SlyX: SlyX; InterPro 73.4 18 0.00039 27.4 6.7 43 512-554 9-51 (69)
173 PRK03947 prefoldin subunit alp 73.3 12 0.00026 32.7 6.6 47 512-558 92-138 (140)
174 PF06005 DUF904: Protein of un 73.2 13 0.00029 28.4 5.8 39 515-553 19-64 (72)
175 PF06005 DUF904: Protein of un 73.2 18 0.00038 27.7 6.5 47 511-557 8-54 (72)
176 smart00284 OLF Olfactomedin-li 73.0 95 0.0021 30.2 18.9 164 182-365 70-242 (255)
177 cd00200 WD40 WD40 domain, foun 73.0 82 0.0018 29.5 21.4 105 256-386 105-211 (289)
178 TIGR02894 DNA_bind_RsfA transc 73.0 7.8 0.00017 34.4 5.2 30 522-551 105-134 (161)
179 PF04111 APG6: Autophagy prote 73.0 8.6 0.00019 38.8 6.3 41 516-556 45-85 (314)
180 PF14197 Cep57_CLD_2: Centroso 73.0 9.8 0.00021 28.8 5.1 47 510-556 22-68 (69)
181 COG4942 Membrane-bound metallo 72.9 8.8 0.00019 39.8 6.3 41 515-555 67-107 (420)
182 KOG2048 WD40 repeat protein [G 72.8 1.5E+02 0.0033 32.5 17.1 87 292-390 423-513 (691)
183 COG1520 FOG: WD40-like repeat 72.7 1.2E+02 0.0026 31.2 19.4 153 192-388 65-225 (370)
184 PLN00181 protein SPA1-RELATED; 72.5 1.9E+02 0.0041 33.4 19.7 60 255-333 587-650 (793)
185 KOG3088 Secretory carrier memb 72.3 4.3 9.4E-05 39.3 3.7 19 529-547 68-86 (313)
186 cd00632 Prefoldin_beta Prefold 71.9 13 0.00029 30.6 6.2 45 511-555 60-104 (105)
187 KOG2264 Exostosin EXT1L [Signa 71.7 7.2 0.00016 41.3 5.4 12 516-527 116-127 (907)
188 PF04102 SlyX: SlyX; InterPro 71.3 11 0.00024 28.5 5.1 36 513-548 17-52 (69)
189 PF04977 DivIC: Septum formati 71.2 11 0.00024 29.1 5.3 32 516-547 19-50 (80)
190 PF07716 bZIP_2: Basic region 70.9 19 0.00041 25.7 6.0 33 525-557 22-54 (54)
191 PF08317 Spc7: Spc7 kinetochor 70.7 6.8 0.00015 39.8 5.0 37 521-557 223-259 (325)
192 PLN00033 photosystem II stabil 70.5 1.4E+02 0.0031 31.2 22.1 160 172-367 121-300 (398)
193 PRK15422 septal ring assembly 70.4 15 0.00032 28.3 5.4 22 515-536 19-40 (79)
194 COG1730 GIM5 Predicted prefold 70.3 16 0.00035 32.1 6.5 44 512-555 92-135 (145)
195 PRK10803 tol-pal system protei 70.2 8.8 0.00019 37.6 5.5 39 508-546 62-100 (263)
196 PRK04325 hypothetical protein; 69.9 13 0.00029 28.6 5.3 28 524-551 26-53 (74)
197 PRK02119 hypothetical protein; 69.9 13 0.00029 28.5 5.2 31 521-551 23-53 (73)
198 PRK02119 hypothetical protein; 69.5 18 0.0004 27.7 6.0 34 514-547 23-56 (73)
199 PF09726 Macoilin: Transmembra 69.5 5.5 0.00012 44.7 4.3 44 515-558 468-511 (697)
200 COG1382 GimC Prefoldin, chaper 68.9 17 0.00038 30.6 6.1 42 515-556 7-48 (119)
201 smart00338 BRLZ basic region l 68.6 18 0.00039 26.8 5.7 39 513-551 25-63 (65)
202 PF11544 Spc42p: Spindle pole 68.5 6 0.00013 30.3 3.0 46 505-550 10-55 (76)
203 PF12999 PRKCSH-like: Glucosid 68.5 15 0.00032 33.4 6.1 21 536-556 154-174 (176)
204 PRK00295 hypothetical protein; 68.4 23 0.00049 26.8 6.2 31 522-552 20-50 (68)
205 PF04899 MbeD_MobD: MbeD/MobD 68.2 21 0.00045 27.1 5.9 45 514-558 21-65 (70)
206 KOG4010 Coiled-coil protein TP 68.2 12 0.00026 33.8 5.3 38 521-558 44-81 (208)
207 PRK00888 ftsB cell division pr 68.1 15 0.00032 30.5 5.6 34 516-549 29-62 (105)
208 TIGR02338 gimC_beta prefoldin, 68.1 18 0.00039 30.2 6.2 45 510-554 63-107 (110)
209 PF06156 DUF972: Protein of un 68.1 14 0.0003 30.7 5.4 39 511-549 19-57 (107)
210 PF06476 DUF1090: Protein of u 67.9 13 0.00029 31.3 5.3 63 495-559 51-113 (115)
211 PF11471 Sugarporin_N: Maltopo 67.7 9.2 0.0002 28.1 3.8 7 544-550 48-54 (60)
212 PF10282 Lactonase: Lactonase, 67.1 1.5E+02 0.0033 30.1 21.6 163 195-390 48-232 (345)
213 PRK00295 hypothetical protein; 67.1 19 0.00041 27.2 5.5 39 510-548 15-53 (68)
214 PF10779 XhlA: Haemolysin XhlA 67.1 16 0.00035 27.8 5.2 41 514-554 6-46 (71)
215 TIGR02894 DNA_bind_RsfA transc 67.0 17 0.00037 32.3 5.9 40 515-554 105-144 (161)
216 KOG0614 cGMP-dependent protein 67.0 11 0.00024 39.9 5.6 50 510-559 20-69 (732)
217 PRK00736 hypothetical protein; 66.8 30 0.00065 26.1 6.6 29 516-544 21-49 (68)
218 KOG2321 WD40 repeat protein [G 66.6 45 0.00098 35.8 9.9 87 171-283 115-208 (703)
219 PF00170 bZIP_1: bZIP transcri 66.4 24 0.00053 26.1 6.0 39 512-550 24-62 (64)
220 PF07106 TBPIP: Tat binding pr 66.0 15 0.00033 33.3 5.8 28 509-536 74-101 (169)
221 COG2433 Uncharacterized conser 65.9 7.4 0.00016 41.8 4.2 9 195-203 28-36 (652)
222 PF11932 DUF3450: Protein of u 65.9 15 0.00033 35.7 6.2 46 510-555 52-97 (251)
223 COG4257 Vgb Streptogramin lyas 65.1 1.5E+02 0.0032 29.2 15.8 190 211-461 83-275 (353)
224 COG4942 Membrane-bound metallo 65.1 3.8 8.2E-05 42.4 1.8 42 516-557 61-102 (420)
225 smart00787 Spc7 Spc7 kinetocho 64.8 9.6 0.00021 38.3 4.6 41 516-556 220-260 (312)
226 PF15290 Syntaphilin: Golgi-lo 64.5 14 0.0003 35.7 5.3 30 530-559 119-148 (305)
227 KOG1962 B-cell receptor-associ 64.4 14 0.00031 34.6 5.3 36 516-551 160-195 (216)
228 PRK13169 DNA replication intia 64.4 21 0.00045 29.8 5.7 38 510-547 18-55 (110)
229 PF11471 Sugarporin_N: Maltopo 64.3 8.1 0.00018 28.4 2.9 27 512-538 30-56 (60)
230 PRK04406 hypothetical protein; 64.0 26 0.00056 27.1 5.8 33 515-547 26-58 (75)
231 KOG3501 Molecular chaperone Pr 63.6 34 0.00073 27.9 6.4 48 510-557 63-110 (114)
232 PF03178 CPSF_A: CPSF A subuni 63.4 1.1E+02 0.0024 30.7 12.3 98 188-314 91-190 (321)
233 PRK00736 hypothetical protein; 63.2 23 0.00051 26.7 5.4 45 510-554 8-52 (68)
234 PTZ00420 coronin; Provisional 63.1 2.4E+02 0.0052 31.1 16.2 61 308-385 139-200 (568)
235 PF08286 Spc24: Spc24 subunit 62.9 2.6 5.6E-05 35.8 0.1 36 516-551 8-43 (118)
236 PF12718 Tropomyosin_1: Tropom 62.8 23 0.00049 31.2 6.1 18 516-533 37-54 (143)
237 PF15525 DUF4652: Domain of un 62.7 1.3E+02 0.0028 27.7 12.5 78 261-341 75-158 (200)
238 COG1729 Uncharacterized protei 62.7 14 0.00031 35.8 5.2 48 509-557 58-105 (262)
239 PRK02793 phi X174 lysis protei 62.6 33 0.00072 26.2 6.2 26 526-551 27-52 (72)
240 PF10779 XhlA: Haemolysin XhlA 62.4 32 0.0007 26.1 6.1 39 519-557 4-42 (71)
241 TIGR03752 conj_TIGR03752 integ 62.4 14 0.00031 38.8 5.4 25 534-558 115-139 (472)
242 COG1579 Zn-ribbon protein, pos 62.4 18 0.0004 34.6 5.8 44 512-555 36-79 (239)
243 PRK14127 cell division protein 62.3 20 0.00043 29.9 5.2 40 512-551 28-67 (109)
244 COG1422 Predicted membrane pro 62.1 23 0.00049 32.7 6.0 20 516-535 74-93 (201)
245 PF15188 CCDC-167: Coiled-coil 61.9 13 0.00029 29.3 3.9 22 510-531 8-29 (85)
246 PRK15422 septal ring assembly 61.6 19 0.00042 27.7 4.6 34 521-554 39-72 (79)
247 PRK09343 prefoldin subunit bet 61.5 32 0.00068 29.3 6.6 48 510-557 67-114 (121)
248 COG1382 GimC Prefoldin, chaper 61.4 30 0.00065 29.2 6.2 44 511-554 67-110 (119)
249 PRK04325 hypothetical protein; 61.3 40 0.00087 25.9 6.4 37 512-548 21-57 (74)
250 PF14870 PSII_BNR: Photosynthe 60.9 1.9E+02 0.004 29.1 17.8 173 172-391 92-270 (302)
251 COG4467 Regulator of replicati 60.7 16 0.00034 29.9 4.2 45 509-553 10-54 (114)
252 PF14583 Pectate_lyase22: Olig 60.7 2.1E+02 0.0046 29.6 14.2 183 195-408 46-248 (386)
253 COG3937 Uncharacterized conser 60.4 31 0.00066 28.4 5.8 22 538-559 86-107 (108)
254 KOG0291 WD40-repeat-containing 60.2 2.9E+02 0.0063 31.0 21.9 92 255-367 361-455 (893)
255 KOG4571 Activating transcripti 60.2 23 0.00049 34.7 6.0 39 516-554 243-281 (294)
256 PRK02793 phi X174 lysis protei 59.9 28 0.0006 26.6 5.3 38 512-549 20-57 (72)
257 PF10458 Val_tRNA-synt_C: Valy 59.8 51 0.0011 24.6 6.7 24 513-536 3-26 (66)
258 PF04568 IATP: Mitochondrial A 59.7 13 0.00028 30.4 3.6 12 547-558 88-99 (100)
259 PF04977 DivIC: Septum formati 58.6 20 0.00044 27.6 4.6 29 512-540 22-50 (80)
260 PF06825 HSBP1: Heat shock fac 58.6 44 0.00095 24.0 5.7 34 523-559 12-45 (54)
261 smart00787 Spc7 Spc7 kinetocho 58.6 16 0.00036 36.7 5.0 37 522-558 219-255 (312)
262 PF07888 CALCOCO1: Calcium bin 58.5 13 0.00029 39.9 4.5 21 521-541 171-191 (546)
263 TIGR03752 conj_TIGR03752 integ 58.5 18 0.00039 38.0 5.4 38 516-553 104-141 (472)
264 PRK09039 hypothetical protein; 58.5 14 0.00031 37.7 4.7 40 512-551 142-181 (343)
265 PF14723 SSFA2_C: Sperm-specif 58.3 24 0.00051 31.6 5.3 23 525-547 149-171 (179)
266 PRK00888 ftsB cell division pr 58.1 21 0.00045 29.6 4.7 34 510-543 30-63 (105)
267 PF07716 bZIP_2: Basic region 57.9 34 0.00075 24.3 5.3 33 517-549 21-53 (54)
268 KOG3335 Predicted coiled-coil 57.6 21 0.00046 32.1 4.9 32 516-547 108-139 (181)
269 PF04728 LPP: Lipoprotein leuc 57.5 69 0.0015 23.1 6.5 41 512-552 8-48 (56)
270 PF13094 CENP-Q: CENP-Q, a CEN 57.3 17 0.00038 32.5 4.6 49 509-557 36-84 (160)
271 PF03962 Mnd1: Mnd1 family; I 57.3 29 0.00063 32.1 6.1 17 542-558 110-126 (188)
272 PF06810 Phage_GP20: Phage min 57.0 27 0.00059 31.2 5.6 12 540-551 56-67 (155)
273 COG4257 Vgb Streptogramin lyas 56.8 2.1E+02 0.0045 28.3 17.0 118 249-390 192-313 (353)
274 PF02388 FemAB: FemAB family; 56.6 14 0.0003 38.9 4.3 18 512-529 247-264 (406)
275 PF12958 DUF3847: Protein of u 56.5 43 0.00094 26.5 6.0 33 516-548 3-35 (86)
276 PF02239 Cytochrom_D1: Cytochr 56.4 2.5E+02 0.0054 29.1 19.3 156 195-388 48-208 (369)
277 PRK10803 tol-pal system protei 56.3 27 0.00058 34.3 6.0 45 511-555 58-102 (263)
278 PF05667 DUF812: Protein of un 56.2 17 0.00037 39.9 5.1 49 510-558 331-379 (594)
279 PF15525 DUF4652: Domain of un 55.7 80 0.0017 29.0 8.3 66 321-390 86-156 (200)
280 KOG2991 Splicing regulator [RN 55.5 20 0.00044 34.1 4.7 48 512-559 255-302 (330)
281 PF05278 PEARLI-4: Arabidopsis 55.2 33 0.00071 33.4 6.1 40 516-555 202-241 (269)
282 KOG4343 bZIP transcription fac 55.2 23 0.00049 37.5 5.4 42 516-557 297-338 (655)
283 PF04728 LPP: Lipoprotein leuc 54.9 44 0.00096 24.1 5.2 40 515-554 4-43 (56)
284 PRK04043 tolB translocation pr 54.8 2.8E+02 0.0061 29.2 18.8 148 211-389 257-407 (419)
285 PF11853 DUF3373: Protein of u 54.5 11 0.00024 39.9 3.1 17 515-531 32-48 (489)
286 PF07106 TBPIP: Tat binding pr 54.4 14 0.00029 33.6 3.4 23 509-531 81-103 (169)
287 PRK00846 hypothetical protein; 53.8 40 0.00087 26.1 5.3 34 515-548 28-61 (77)
288 PF13088 BNR_2: BNR repeat-lik 53.8 2.2E+02 0.0047 27.6 13.1 156 191-363 114-275 (275)
289 PF12958 DUF3847: Protein of u 53.6 26 0.00056 27.8 4.3 33 509-541 3-35 (86)
290 PF09738 DUF2051: Double stran 53.6 17 0.00038 36.2 4.2 47 509-555 121-167 (302)
291 KOG2391 Vacuolar sorting prote 53.5 37 0.0008 34.0 6.3 32 516-547 248-279 (365)
292 KOG4196 bZIP transcription fac 53.4 50 0.0011 28.1 6.1 38 517-554 77-114 (135)
293 PRK09343 prefoldin subunit bet 53.3 46 0.00099 28.3 6.2 44 512-555 5-48 (121)
294 PF06810 Phage_GP20: Phage min 53.3 27 0.00059 31.2 5.0 16 530-545 53-68 (155)
295 PF15070 GOLGA2L5: Putative go 53.3 28 0.00061 38.5 6.1 47 512-558 85-131 (617)
296 KOG1962 B-cell receptor-associ 53.3 23 0.0005 33.3 4.7 45 513-557 150-194 (216)
297 PF06273 eIF-4B: Plant specifi 53.0 20 0.00044 37.6 4.6 47 512-558 371-419 (492)
298 PF12777 MT: Microtubule-bindi 52.9 13 0.00028 38.0 3.4 42 510-551 238-279 (344)
299 PF04201 TPD52: Tumour protein 52.7 50 0.0011 29.5 6.4 22 521-542 43-64 (162)
300 PF02403 Seryl_tRNA_N: Seryl-t 52.3 23 0.00049 29.3 4.2 25 534-558 73-97 (108)
301 TIGR02449 conserved hypothetic 52.3 32 0.00069 25.7 4.3 38 516-553 16-53 (65)
302 PF10224 DUF2205: Predicted co 52.3 54 0.0012 25.6 5.8 41 514-554 23-63 (80)
303 PF07926 TPR_MLP1_2: TPR/MLP1/ 52.2 25 0.00055 30.4 4.6 45 512-556 71-119 (132)
304 PRK13182 racA polar chromosome 51.8 49 0.0011 30.2 6.5 20 538-557 121-140 (175)
305 PF07889 DUF1664: Protein of u 51.7 36 0.00078 29.2 5.2 48 508-555 76-123 (126)
306 PF12718 Tropomyosin_1: Tropom 51.7 38 0.00083 29.8 5.6 36 516-551 23-58 (143)
307 PF10473 CENP-F_leu_zip: Leuci 51.4 39 0.00084 29.6 5.5 21 521-541 80-100 (140)
308 PF12999 PRKCSH-like: Glucosid 51.2 43 0.00093 30.5 5.9 32 527-558 138-169 (176)
309 KOG0976 Rho/Rac1-interacting s 51.2 25 0.00054 39.1 5.1 37 515-551 107-143 (1265)
310 PF14583 Pectate_lyase22: Olig 51.0 1.9E+02 0.0041 30.0 11.2 158 208-389 165-335 (386)
311 PF05064 Nsp1_C: Nsp1-like C-t 51.0 17 0.00037 30.7 3.2 53 506-558 49-101 (116)
312 COG0823 TolB Periplasmic compo 50.8 3.3E+02 0.0071 28.8 14.6 150 211-392 218-369 (425)
313 PRK14127 cell division protein 50.8 55 0.0012 27.3 6.0 12 546-557 89-100 (109)
314 PRK01742 tolB translocation pr 50.7 3.2E+02 0.007 28.7 20.8 113 255-385 214-327 (429)
315 KOG0649 WD40 repeat protein [G 50.6 2.4E+02 0.0052 27.2 15.7 155 172-365 100-263 (325)
316 PF09726 Macoilin: Transmembra 50.4 14 0.0003 41.6 3.2 16 90-105 189-204 (697)
317 PF12325 TMF_TATA_bd: TATA ele 50.2 59 0.0013 27.7 6.3 12 516-527 39-50 (120)
318 PF10234 Cluap1: Clusterin-ass 50.2 42 0.00092 32.8 6.1 17 535-551 197-213 (267)
319 KOG4643 Uncharacterized coiled 50.1 36 0.00079 38.9 6.3 48 511-558 174-221 (1195)
320 KOG1029 Endocytic adaptor prot 50.1 8.1 0.00017 42.5 1.3 31 65-95 7-42 (1118)
321 KOG3669 Uncharacterized conser 50.0 2.9E+02 0.0063 30.0 12.4 86 276-390 212-301 (705)
322 PF09910 DUF2139: Uncharacteri 49.7 2.8E+02 0.006 27.7 15.1 97 195-312 117-219 (339)
323 KOG3119 Basic region leucine z 49.6 28 0.00061 34.2 5.0 27 531-557 218-244 (269)
324 PRK03947 prefoldin subunit alp 49.6 56 0.0012 28.5 6.4 42 513-554 5-46 (140)
325 PF07734 FBA_1: F-box associat 49.6 1.9E+02 0.0041 25.7 12.9 126 303-432 2-138 (164)
326 PF15290 Syntaphilin: Golgi-lo 49.6 22 0.00048 34.4 4.0 28 508-535 76-103 (305)
327 KOG0266 WD40 repeat-containing 49.5 3.5E+02 0.0076 28.8 18.0 147 196-383 258-410 (456)
328 KOG3881 Uncharacterized conser 49.5 3.1E+02 0.0068 28.2 12.4 156 196-384 161-322 (412)
329 KOG0250 DNA repair protein RAD 49.3 16 0.00036 42.0 3.6 35 524-558 390-424 (1074)
330 PF04508 Pox_A_type_inc: Viral 49.3 13 0.00028 21.5 1.4 12 540-551 6-17 (23)
331 PF06428 Sec2p: GDP/GTP exchan 49.0 78 0.0017 25.9 6.6 20 511-530 12-31 (100)
332 COG1842 PspA Phage shock prote 48.9 44 0.00094 31.9 5.9 42 516-557 94-135 (225)
333 PF11559 ADIP: Afadin- and alp 48.8 43 0.00093 29.6 5.6 36 516-551 75-110 (151)
334 PF02183 HALZ: Homeobox associ 48.6 69 0.0015 22.0 5.3 33 517-549 8-40 (45)
335 PRK00846 hypothetical protein; 48.6 75 0.0016 24.6 6.0 39 516-554 22-60 (77)
336 PF10473 CENP-F_leu_zip: Leuci 48.3 57 0.0012 28.6 6.0 18 537-554 82-99 (140)
337 PF05010 TACC: Transforming ac 47.9 48 0.001 31.1 5.9 42 515-556 155-196 (207)
338 cd00890 Prefoldin Prefoldin is 47.8 54 0.0012 27.8 6.0 39 516-554 89-127 (129)
339 KOG4196 bZIP transcription fac 47.7 44 0.00095 28.4 5.0 31 522-552 75-105 (135)
340 KOG3088 Secretory carrier memb 47.4 28 0.0006 34.0 4.3 27 520-546 66-92 (313)
341 TIGR02338 gimC_beta prefoldin, 47.3 59 0.0013 27.1 5.9 40 516-555 5-44 (110)
342 PF11853 DUF3373: Protein of u 47.1 18 0.00039 38.4 3.3 28 522-549 32-59 (489)
343 PF10805 DUF2730: Protein of u 47.0 51 0.0011 27.3 5.4 36 516-551 51-88 (106)
344 PLN03215 ascorbic acid mannose 46.9 3.5E+02 0.0076 28.0 14.9 100 220-342 189-305 (373)
345 COG2433 Uncharacterized conser 46.7 37 0.00081 36.7 5.5 12 547-558 479-490 (652)
346 KOG0709 CREB/ATF family transc 46.7 20 0.00043 37.4 3.4 43 516-558 267-309 (472)
347 PF10186 Atg14: UV radiation r 46.6 42 0.00092 33.3 5.9 33 516-548 72-104 (302)
348 PF04568 IATP: Mitochondrial A 46.6 47 0.001 27.2 4.9 28 521-551 72-99 (100)
349 PF15458 NTR2: Nineteen comple 46.4 58 0.0013 31.7 6.5 48 512-559 206-253 (254)
350 PF09766 FimP: Fms-interacting 46.4 58 0.0013 33.5 6.9 50 509-558 86-138 (355)
351 KOG4571 Activating transcripti 46.4 44 0.00095 32.8 5.5 41 514-554 248-288 (294)
352 PF10234 Cluap1: Clusterin-ass 46.3 24 0.00051 34.5 3.7 43 516-558 171-213 (267)
353 PF05008 V-SNARE: Vesicle tran 46.0 77 0.0017 24.4 6.0 48 511-558 22-77 (79)
354 PF12329 TMF_DNA_bd: TATA elem 45.9 67 0.0015 24.7 5.5 37 515-551 34-70 (74)
355 PF02996 Prefoldin: Prefoldin 45.7 60 0.0013 27.2 5.9 40 516-555 79-118 (120)
356 PF14257 DUF4349: Domain of un 45.6 41 0.0009 32.9 5.5 44 515-558 140-185 (262)
357 KOG4005 Transcription factor X 45.4 55 0.0012 30.9 5.7 45 510-554 93-137 (292)
358 KOG0646 WD40 repeat protein [G 45.4 3.9E+02 0.0085 28.1 17.0 30 353-387 283-312 (476)
359 PF05103 DivIVA: DivIVA protei 45.4 17 0.00036 31.2 2.4 46 511-556 22-67 (131)
360 PRK11546 zraP zinc resistance 45.3 62 0.0014 28.4 5.8 40 513-552 60-106 (143)
361 PF09340 NuA4: Histone acetylt 45.2 38 0.00082 26.5 4.1 16 535-550 16-31 (80)
362 KOG1029 Endocytic adaptor prot 45.2 8.2 0.00018 42.5 0.5 17 40-56 10-26 (1118)
363 PRK06800 fliH flagellar assemb 45.1 44 0.00096 30.2 4.9 9 518-526 49-57 (228)
364 PF14197 Cep57_CLD_2: Centroso 45.0 92 0.002 23.6 6.0 39 513-551 4-42 (69)
365 KOG4403 Cell surface glycoprot 44.9 56 0.0012 33.7 6.1 17 542-558 309-325 (575)
366 KOG0971 Microtubule-associated 44.8 45 0.00098 37.8 5.9 46 513-558 395-440 (1243)
367 PF04576 Zein-binding: Zein-bi 44.8 80 0.0017 25.4 5.8 44 516-559 40-94 (94)
368 PF01920 Prefoldin_2: Prefoldi 44.8 55 0.0012 26.7 5.4 44 511-554 59-102 (106)
369 PF14193 DUF4315: Domain of un 44.7 61 0.0013 25.5 5.1 33 516-548 3-35 (83)
370 PF10393 Matrilin_ccoil: Trime 44.6 41 0.00088 23.4 3.6 19 540-558 28-46 (47)
371 PF04849 HAP1_N: HAP1 N-termin 44.6 41 0.00089 33.4 5.1 45 508-552 207-251 (306)
372 PF12777 MT: Microtubule-bindi 44.5 54 0.0012 33.6 6.3 39 513-551 234-272 (344)
373 PF04420 CHD5: CHD5-like prote 44.4 32 0.00069 31.0 4.1 19 539-557 70-88 (161)
374 TIGR03185 DNA_S_dndD DNA sulfu 44.2 43 0.00093 37.6 6.0 42 516-557 423-464 (650)
375 PLN00181 protein SPA1-RELATED; 43.9 5.6E+02 0.012 29.5 21.0 61 255-332 629-691 (793)
376 KOG0289 mRNA splicing factor [ 43.7 4.1E+02 0.0088 27.9 13.4 120 248-391 350-471 (506)
377 KOG0981 DNA topoisomerase I [R 43.6 43 0.00093 35.9 5.3 52 506-557 635-698 (759)
378 cd00632 Prefoldin_beta Prefold 43.0 51 0.0011 27.2 4.8 38 521-558 63-100 (105)
379 PF10883 DUF2681: Protein of u 42.8 74 0.0016 25.3 5.3 18 516-533 32-49 (87)
380 TIGR02209 ftsL_broad cell divi 42.8 69 0.0015 25.0 5.4 32 516-547 26-57 (85)
381 COG1730 GIM5 Predicted prefold 42.7 66 0.0014 28.3 5.6 42 510-551 97-138 (145)
382 cd00890 Prefoldin Prefoldin is 42.6 56 0.0012 27.8 5.3 34 518-551 3-36 (129)
383 PHA01750 hypothetical protein 42.2 1E+02 0.0022 22.8 5.5 27 530-556 44-70 (75)
384 PF05384 DegS: Sensor protein 42.1 83 0.0018 28.2 6.2 43 514-556 27-69 (159)
385 COG1729 Uncharacterized protei 42.0 47 0.001 32.4 5.0 20 516-535 58-77 (262)
386 PHA03385 IX capsid protein IX, 42.0 47 0.001 27.9 4.2 31 513-543 99-129 (135)
387 KOG2391 Vacuolar sorting prote 41.9 39 0.00084 33.8 4.5 36 516-551 234-269 (365)
388 PF15035 Rootletin: Ciliary ro 41.9 56 0.0012 30.0 5.3 26 526-551 86-111 (182)
389 PF00957 Synaptobrevin: Synapt 41.9 99 0.0021 24.4 6.2 34 516-549 5-38 (89)
390 KOG0976 Rho/Rac1-interacting s 41.8 40 0.00086 37.6 4.9 53 506-558 105-157 (1265)
391 PRK14011 prefoldin subunit alp 41.6 84 0.0018 27.7 6.1 38 513-550 94-131 (144)
392 PRK11020 hypothetical protein; 41.3 1.1E+02 0.0025 25.4 6.3 18 516-533 7-24 (118)
393 PF05911 DUF869: Plant protein 41.0 57 0.0012 37.1 6.2 48 511-558 593-640 (769)
394 PF10828 DUF2570: Protein of u 40.9 77 0.0017 26.4 5.6 41 513-553 45-85 (110)
395 KOG0804 Cytoplasmic Zn-finger 40.7 44 0.00095 34.7 4.8 15 375-389 268-283 (493)
396 TIGR03185 DNA_S_dndD DNA sulfu 40.6 56 0.0012 36.7 6.2 9 309-317 30-38 (650)
397 cd00584 Prefoldin_alpha Prefol 40.4 64 0.0014 27.6 5.3 34 518-551 3-36 (129)
398 cd00584 Prefoldin_alpha Prefol 40.1 86 0.0019 26.8 6.0 40 515-554 88-127 (129)
399 PF05266 DUF724: Protein of un 40.0 54 0.0012 30.4 4.9 46 510-555 134-179 (190)
400 PF06785 UPF0242: Uncharacteri 40.0 69 0.0015 31.9 5.8 28 512-539 132-159 (401)
401 PF04012 PspA_IM30: PspA/IM30 40.0 79 0.0017 29.9 6.3 40 517-556 94-133 (221)
402 PF09340 NuA4: Histone acetylt 39.9 41 0.0009 26.3 3.6 27 516-542 4-30 (80)
403 KOG4603 TBP-1 interacting prot 39.8 45 0.00098 29.8 4.1 22 531-552 119-140 (201)
404 PF07989 Microtub_assoc: Micro 39.5 84 0.0018 24.2 5.1 7 530-536 52-58 (75)
405 KOG0266 WD40 repeat-containing 39.3 5E+02 0.011 27.6 20.7 64 255-335 257-322 (456)
406 PRK14011 prefoldin subunit alp 39.3 1.1E+02 0.0024 27.0 6.5 32 517-548 91-122 (144)
407 PRK05431 seryl-tRNA synthetase 39.3 36 0.00078 36.0 4.2 26 533-558 71-96 (425)
408 PRK01203 prefoldin subunit alp 39.3 1E+02 0.0022 26.6 6.1 42 513-556 86-127 (130)
409 PRK06342 transcription elongat 39.2 74 0.0016 28.6 5.5 43 516-558 36-80 (160)
410 PF10224 DUF2205: Predicted co 39.0 1.6E+02 0.0034 23.1 6.5 35 517-551 19-53 (80)
411 KOG4603 TBP-1 interacting prot 38.8 92 0.002 27.9 5.8 23 516-538 88-110 (201)
412 TIGR02231 conserved hypothetic 38.7 57 0.0012 35.6 5.8 41 518-558 128-168 (525)
413 TIGR02132 phaR_Bmeg polyhydrox 38.6 88 0.0019 28.3 5.7 46 512-557 84-129 (189)
414 PF05667 DUF812: Protein of un 38.5 62 0.0013 35.7 5.9 29 82-110 26-54 (594)
415 TIGR01069 mutS2 MutS2 family p 38.5 65 0.0014 36.9 6.3 24 63-89 61-85 (771)
416 PF08581 Tup_N: Tup N-terminal 38.4 1.2E+02 0.0026 23.7 5.9 31 520-550 24-54 (79)
417 PF11544 Spc42p: Spindle pole 38.3 76 0.0017 24.4 4.6 29 518-546 9-37 (76)
418 PF03961 DUF342: Protein of un 38.3 36 0.00079 36.3 4.1 10 358-367 232-241 (451)
419 PF03980 Nnf1: Nnf1 ; InterPr 38.2 67 0.0015 26.6 4.9 34 516-549 75-108 (109)
420 PF01519 DUF16: Protein of unk 38.1 1.4E+02 0.0029 24.5 6.2 38 509-546 39-78 (102)
421 PF04012 PspA_IM30: PspA/IM30 37.7 84 0.0018 29.7 6.1 47 511-557 27-73 (221)
422 PRK00409 recombination and DNA 37.6 69 0.0015 36.8 6.4 24 63-89 64-88 (782)
423 TIGR02209 ftsL_broad cell divi 37.3 86 0.0019 24.4 5.2 23 516-538 33-55 (85)
424 TIGR03074 PQQ_membr_DH membran 37.1 7E+02 0.015 28.7 20.4 33 249-288 188-222 (764)
425 PF02344 Myc-LZ: Myc leucine z 37.1 88 0.0019 19.5 3.8 18 519-536 6-23 (32)
426 PF10481 CENP-F_N: Cenp-F N-te 37.0 94 0.002 30.2 6.0 43 516-558 76-118 (307)
427 PF10146 zf-C4H2: Zinc finger- 36.7 74 0.0016 30.5 5.4 36 515-550 68-103 (230)
428 PF10211 Ax_dynein_light: Axon 36.7 1.1E+02 0.0023 28.4 6.4 28 514-541 127-154 (189)
429 PF10205 KLRAQ: Predicted coil 36.7 1.5E+02 0.0032 24.3 6.3 43 505-547 31-73 (102)
430 PF07544 Med9: RNA polymerase 36.4 78 0.0017 24.9 4.7 31 526-556 50-80 (83)
431 PLN02678 seryl-tRNA synthetase 36.1 44 0.00095 35.5 4.2 25 534-558 77-101 (448)
432 PF07352 Phage_Mu_Gam: Bacteri 36.1 76 0.0016 28.0 5.2 18 516-533 12-29 (149)
433 PF02996 Prefoldin: Prefoldin 36.1 1E+02 0.0022 25.9 5.8 38 512-549 82-119 (120)
434 PF07989 Microtub_assoc: Micro 36.1 1.1E+02 0.0023 23.6 5.2 19 538-556 53-71 (75)
435 PF14818 DUF4482: Domain of un 36.0 60 0.0013 28.3 4.2 42 508-549 14-55 (141)
436 PF10883 DUF2681: Protein of u 35.9 79 0.0017 25.1 4.5 33 519-551 21-53 (87)
437 KOG0995 Centromere-associated 35.8 52 0.0011 35.4 4.5 21 516-536 296-316 (581)
438 KOG0263 Transcription initiati 35.8 6.4E+02 0.014 28.3 12.8 105 255-383 545-650 (707)
439 KOG1760 Molecular chaperone Pr 35.8 1.1E+02 0.0023 25.9 5.4 21 536-556 96-116 (131)
440 PRK10698 phage shock protein P 35.7 90 0.002 29.7 5.9 38 514-551 99-136 (222)
441 TIGR00293 prefoldin, archaeal 35.6 83 0.0018 26.7 5.2 33 519-551 4-36 (126)
442 KOG2991 Splicing regulator [RN 35.5 93 0.002 29.8 5.7 47 512-558 106-159 (330)
443 KOG4360 Uncharacterized coiled 35.4 59 0.0013 34.4 4.8 44 509-552 207-250 (596)
444 PRK04863 mukB cell division pr 35.3 41 0.00088 41.4 4.2 51 509-559 994-1044(1486)
445 KOG1332 Vesicle coat complex C 35.3 4.2E+02 0.0092 25.6 10.9 185 261-460 69-299 (299)
446 PF04380 BMFP: Membrane fusoge 35.2 62 0.0013 25.2 3.9 31 527-557 49-79 (79)
447 TIGR00293 prefoldin, archaeal 35.1 88 0.0019 26.6 5.3 37 515-551 87-123 (126)
448 PF06103 DUF948: Bacterial pro 35.0 99 0.0022 24.5 5.2 41 511-551 30-70 (90)
449 PF09032 Siah-Interact_N: Siah 34.9 80 0.0017 24.6 4.4 41 515-555 4-46 (79)
450 KOG0286 G-protein beta subunit 34.8 4.7E+02 0.01 26.0 11.4 137 251-436 72-209 (343)
451 PF07889 DUF1664: Protein of u 34.5 1.2E+02 0.0026 26.0 5.8 7 542-548 103-109 (126)
452 PF09969 DUF2203: Uncharacteri 34.4 91 0.002 26.5 5.1 42 517-558 23-66 (120)
453 TIGR03789 pdsO proteobacterial 34.4 88 0.0019 30.2 5.6 12 537-548 110-121 (239)
454 PF07334 IFP_35_N: Interferon- 34.2 85 0.0018 24.2 4.3 24 534-557 6-29 (76)
455 PF15619 Lebercilin: Ciliary p 34.2 1.1E+02 0.0023 28.5 6.0 28 531-558 167-194 (194)
456 PF05529 Bap31: B-cell recepto 34.1 73 0.0016 29.5 4.9 41 512-552 152-192 (192)
457 PF04350 PilO: Pilus assembly 34.0 37 0.0008 29.5 2.8 22 530-551 25-46 (144)
458 PF09006 Surfac_D-trimer: Lung 34.0 1.1E+02 0.0024 21.1 4.3 23 517-539 2-24 (46)
459 KOG0649 WD40 repeat protein [G 33.9 4.4E+02 0.0096 25.5 15.5 112 254-389 125-242 (325)
460 KOG3335 Predicted coiled-coil 33.9 48 0.001 29.9 3.4 41 518-558 103-143 (181)
461 PF11740 KfrA_N: Plasmid repli 33.9 1.2E+02 0.0026 25.4 5.9 35 525-559 85-119 (120)
462 COG3879 Uncharacterized protei 33.8 82 0.0018 30.3 5.1 31 518-548 54-84 (247)
463 KOG0278 Serine/threonine kinas 33.8 2.7E+02 0.0058 27.0 8.4 83 273-368 206-288 (334)
464 PF05615 THOC7: Tho complex su 33.6 99 0.0021 26.9 5.4 9 537-545 97-105 (139)
465 COG4946 Uncharacterized protei 33.4 6.2E+02 0.013 27.0 20.7 223 195-471 278-500 (668)
466 PF09738 DUF2051: Double stran 33.3 89 0.0019 31.3 5.6 51 508-558 113-163 (302)
467 TIGR03074 PQQ_membr_DH membran 33.3 8E+02 0.017 28.2 26.1 232 179-450 172-479 (764)
468 PRK09973 putative outer membra 33.3 1.2E+02 0.0025 24.1 5.0 44 508-551 25-68 (85)
469 PRK11677 hypothetical protein; 33.2 1.5E+02 0.0033 25.7 6.3 45 514-558 29-73 (134)
470 PHA03385 IX capsid protein IX, 33.1 67 0.0014 27.0 3.8 33 527-559 99-131 (135)
471 PLN03215 ascorbic acid mannose 33.1 5.7E+02 0.012 26.5 14.9 132 171-334 190-349 (373)
472 PRK15396 murein lipoprotein; P 33.0 1.5E+02 0.0033 23.1 5.6 49 508-556 26-74 (78)
473 PF11180 DUF2968: Protein of u 32.9 1.2E+02 0.0026 28.0 5.8 50 510-559 129-178 (192)
474 PRK12705 hypothetical protein; 32.9 69 0.0015 34.6 5.0 52 508-559 71-122 (508)
475 PF05529 Bap31: B-cell recepto 32.8 72 0.0016 29.5 4.7 39 519-557 152-190 (192)
476 PF03961 DUF342: Protein of un 32.6 55 0.0012 34.9 4.4 54 505-558 332-398 (451)
477 PF15079 DUF4546: Domain of un 32.5 1E+02 0.0022 27.4 5.1 43 517-559 50-95 (205)
478 KOG0243 Kinesin-like protein [ 32.4 65 0.0014 37.5 4.9 52 508-559 449-507 (1041)
479 PF05278 PEARLI-4: Arabidopsis 32.4 79 0.0017 30.8 4.8 53 506-558 199-251 (269)
480 TIGR01843 type_I_hlyD type I s 32.4 97 0.0021 32.4 6.2 49 510-558 133-181 (423)
481 TIGR03495 phage_LysB phage lys 32.3 1.2E+02 0.0027 26.3 5.6 49 509-557 42-90 (135)
482 COG2900 SlyX Uncharacterized p 32.3 1.6E+02 0.0035 22.4 5.4 51 509-559 10-60 (72)
483 COG5185 HEC1 Protein involved 32.2 74 0.0016 33.3 4.8 55 505-559 485-543 (622)
484 COG1422 Predicted membrane pro 32.1 61 0.0013 30.0 3.8 43 506-548 71-121 (201)
485 PF01920 Prefoldin_2: Prefoldi 31.9 1.4E+02 0.003 24.2 5.8 40 517-556 1-40 (106)
486 COG2900 SlyX Uncharacterized p 31.6 2.3E+02 0.0051 21.5 6.2 49 511-559 5-53 (72)
487 PRK00409 recombination and DNA 31.6 92 0.002 35.8 6.1 50 509-558 511-560 (782)
488 PF08172 CASP_C: CASP C termin 31.3 69 0.0015 31.1 4.3 40 508-547 87-126 (248)
489 COG2706 3-carboxymuconate cycl 31.3 5.8E+02 0.013 26.0 22.3 236 195-456 51-331 (346)
490 TIGR02977 phageshock_pspA phag 31.3 1.4E+02 0.0031 28.2 6.5 46 512-557 29-74 (219)
491 PHA03158 hypothetical protein; 31.2 89 0.0019 28.5 4.6 39 520-558 232-270 (273)
492 cd04776 HTH_GnyR Helix-Turn-He 31.1 1.4E+02 0.003 25.2 5.8 41 512-552 78-118 (118)
493 COG1842 PspA Phage shock prote 31.1 1.2E+02 0.0027 28.9 5.9 45 510-554 95-139 (225)
494 PF13851 GAS: Growth-arrest sp 31.1 1E+02 0.0023 28.8 5.4 51 509-559 88-138 (201)
495 PRK11546 zraP zinc resistance 30.8 1.1E+02 0.0024 26.9 5.0 52 507-558 47-105 (143)
496 TIGR03495 phage_LysB phage lys 30.8 1.4E+02 0.0031 25.9 5.7 50 509-558 35-84 (135)
497 PF06785 UPF0242: Uncharacteri 30.7 1.1E+02 0.0023 30.7 5.4 51 509-559 136-186 (401)
498 PF08581 Tup_N: Tup N-terminal 30.7 2E+02 0.0043 22.4 6.0 47 510-559 28-74 (79)
499 COG5019 CDC3 Septin family pro 30.7 1.2E+02 0.0027 30.9 6.1 44 512-558 322-365 (373)
500 PRK10698 phage shock protein P 30.6 1.5E+02 0.0033 28.2 6.5 46 512-557 29-74 (222)
No 1
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=1.8e-37 Score=329.54 Aligned_cols=256 Identities=22% Similarity=0.361 Sum_probs=218.7
Q ss_pred ceEEecccCCCCCCcccceeEEEECCEEEEEccCCCC--cccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCC-CCc
Q 008611 171 DQWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNHNG--RYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLT-PCA 247 (559)
Q Consensus 171 ~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~--~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~-~r~ 247 (559)
++|..+.+.+.+|.+|.+|+++++++.|||+||.... ...+++|+||+.+++|..++++. ..|. +|.
T Consensus 151 ~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g----------~~P~~~~~ 220 (470)
T PLN02193 151 GKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATG----------DVPHLSCL 220 (470)
T ss_pred ceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCC----------CCCCCccc
Confidence 6999998877889999999999999999999997532 34578999999999999876543 2233 477
Q ss_pred cceeEEeCCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEE
Q 008611 248 GHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHI 327 (559)
Q Consensus 248 ~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~ 327 (559)
+|+++.++++||||||.... ..++++++||+.+++|+.+++.+..|.+|..|++++++++||||||.+... .++++++
T Consensus 221 ~~~~v~~~~~lYvfGG~~~~-~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~-~~~~~~~ 298 (470)
T PLN02193 221 GVRMVSIGSTLYVFGGRDAS-RQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATA-RLKTLDS 298 (470)
T ss_pred ceEEEEECCEEEEECCCCCC-CCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCC-CcceEEE
Confidence 99999999999999998754 567899999999999999986656689999999999999999999997654 4789999
Q ss_pred EECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEeccCCCCCCCCccccEEEEE
Q 008611 328 LDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTI 407 (559)
Q Consensus 328 yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~~~~~~~p~~R~~hs~~~~ 407 (559)
||+.+++|+.++..+.+|.+|..|+++++ +++|||+||.++. .++++++||+.+++|+.+...+..|.+|..|+++++
T Consensus 299 yd~~t~~W~~~~~~~~~~~~R~~~~~~~~-~gkiyviGG~~g~-~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~ 376 (470)
T PLN02193 299 YNIVDKKWFHCSTPGDSFSIRGGAGLEVV-QGKVWVVYGFNGC-EVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAV 376 (470)
T ss_pred EECCCCEEEeCCCCCCCCCCCCCcEEEEE-CCcEEEEECCCCC-ccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEE
Confidence 99999999999876667889999999988 4569999997643 478999999999999999766677999999999999
Q ss_pred CCceecceeeeeeccCCCcEEEEEcCcCC----------CCcccEEEEeCCCcceecccC
Q 008611 408 GENWFLGLSLVVSSYSGEDVIVAFGGYNG----------RYNNEVHVLKPSHKSTLSSKM 457 (559)
Q Consensus 408 ~~~~~iG~s~~~~~~~~~~~l~v~GG~~~----------~~~~~v~~~d~~~~~~~~~~~ 457 (559)
++ +||||||... ...+++++||+.++.|.....
T Consensus 377 ~~-----------------~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~ 419 (470)
T PLN02193 377 GK-----------------HIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDK 419 (470)
T ss_pred CC-----------------EEEEECCccCCccccccCccceeccEEEEEcCcCEEEEccc
Confidence 66 8999999753 246799999999998876543
No 2
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=2.8e-37 Score=316.51 Aligned_cols=258 Identities=22% Similarity=0.370 Sum_probs=211.8
Q ss_pred cceEEecccC-CCCCCcccceeEEEECCEEEEEccCCC--CcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCC-C
Q 008611 170 YDQWIAPPIS-GQRPKARYEHGAAVVQDKMYIYGGNHN--GRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLT-P 245 (559)
Q Consensus 170 ~~~W~~~~~~-g~~p~~r~~~~~~~~~~~lyv~GG~~~--~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~-~ 245 (559)
.+.|..+... |.+|.+|.+|++++++++|||+||... ....+++++||+.+++|..++++. ..|. .
T Consensus 6 ~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~----------~~p~~~ 75 (341)
T PLN02153 6 QGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANG----------DVPRIS 75 (341)
T ss_pred CCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccC----------CCCCCc
Confidence 3579988764 458999999999999999999999753 345689999999999999987653 1222 3
Q ss_pred CccceeEEeCCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccC--CCCCCCccceEEEEECCEEEEEcCcCCCC----
Q 008611 246 CAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTY--GKPPVSRGGQSVTLVGTSLVIFGGEDAKR---- 319 (559)
Q Consensus 246 r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~--g~~p~~r~~~~~~~~~~~lyv~GG~~~~~---- 319 (559)
+.+|+++.++++||||||.... ..++++++||+.+++|+.++.. ...|.+|.+|++++++++||||||.+...
T Consensus 76 ~~~~~~~~~~~~iyv~GG~~~~-~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~ 154 (341)
T PLN02153 76 CLGVRMVAVGTKLYIFGGRDEK-REFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKT 154 (341)
T ss_pred cCceEEEEECCEEEEECCCCCC-CccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCC
Confidence 5589999999999999998755 4578999999999999998642 12388999999999999999999986432
Q ss_pred -CCcCceEEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCC--------CCCcCceEEEECCCCeeEecc
Q 008611 320 -SLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSH--------AACFNDLHVLDLQTMEWSRPT 390 (559)
Q Consensus 320 -~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~--------~~~~~dv~~~d~~~~~W~~~~ 390 (559)
..++++++||+.+++|..++..+.+|.+|.+|+++++ +++|||+||... ...++++++||+.+++|.++.
T Consensus 155 ~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~ 233 (341)
T PLN02153 155 PERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVV-QGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVE 233 (341)
T ss_pred CcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEE-CCeEEEEeccccccccCCccceecCceEEEEcCCCcEEecc
Confidence 1357899999999999999877667789999998887 556999998542 123678999999999999997
Q ss_pred CCCCCCCCccccEEEEECCceecceeeeeeccCCCcEEEEEcCcC----------CCCcccEEEEeCCCcceeccc
Q 008611 391 QQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYN----------GRYNNEVHVLKPSHKSTLSSK 456 (559)
Q Consensus 391 ~~~~~p~~R~~hs~~~~~~~~~iG~s~~~~~~~~~~~l~v~GG~~----------~~~~~~v~~~d~~~~~~~~~~ 456 (559)
..+.+|.+|..|+++++++ +||||||.. +...+++|+||+.++.|....
T Consensus 234 ~~g~~P~~r~~~~~~~~~~-----------------~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~ 292 (341)
T PLN02153 234 TTGAKPSARSVFAHAVVGK-----------------YIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLG 292 (341)
T ss_pred ccCCCCCCcceeeeEEECC-----------------EEEEECcccCCccccccccccccccEEEEEcCccEEEecc
Confidence 6667899999999999966 999999973 224679999999999887554
No 3
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=7.2e-38 Score=336.53 Aligned_cols=254 Identities=26% Similarity=0.454 Sum_probs=229.0
Q ss_pred eccCcceeccc----eEEecccCCCCCCcccceeEEEECCEEEEEccCC-CCcccCcEEEEEcCCCeEEEeeeccccCCC
Q 008611 161 SEGLGSVVVYD----QWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNH-NGRYLSDMHILDLRSWAWSKIQAKAVAEST 235 (559)
Q Consensus 161 ~~~~~~~~~~~----~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~-~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~ 235 (559)
...++.++.|| .|..+++ +|.+|..++++++++.||++||.+ +...++++++||+.+++|..+++|
T Consensus 297 ~~~~~~ve~yd~~~~~w~~~a~---m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M------ 367 (571)
T KOG4441|consen 297 GQSLRSVECYDPKTNEWSSLAP---MPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPM------ 367 (571)
T ss_pred CcccceeEEecCCcCcEeecCC---CCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCc------
Confidence 34456677776 8999985 999999999999999999999998 678899999999999999998765
Q ss_pred CCCCCCCCCCCccceeEEeCCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCc
Q 008611 236 ESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGE 315 (559)
Q Consensus 236 ~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~ 315 (559)
..+|.+|++++++|.||++||.++. ..++++++|||.+++|+.++ +|+.+|++|++++++++||++||.
T Consensus 368 -------~~~R~~~~v~~l~g~iYavGG~dg~-~~l~svE~YDp~~~~W~~va---~m~~~r~~~gv~~~~g~iYi~GG~ 436 (571)
T KOG4441|consen 368 -------NTKRSDFGVAVLDGKLYAVGGFDGE-KSLNSVECYDPVTNKWTPVA---PMLTRRSGHGVAVLGGKLYIIGGG 436 (571)
T ss_pred -------cCccccceeEEECCEEEEEeccccc-cccccEEEecCCCCcccccC---CCCcceeeeEEEEECCEEEEEcCc
Confidence 5999999999999999999999965 78899999999999999997 688899999999999999999999
Q ss_pred CCCCCCcCceEEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEeccCCCCC
Q 008611 316 DAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEI 395 (559)
Q Consensus 316 ~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~~~~~~~ 395 (559)
++....++.+.+|||.+++|+.++++ +.+|.+++++++ +++||++||+++...+..+.+||+.+++|..+ .++
T Consensus 437 ~~~~~~l~sve~YDP~t~~W~~~~~M---~~~R~~~g~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v---~~m 509 (571)
T KOG4441|consen 437 DGSSNCLNSVECYDPETNTWTLIAPM---NTRRSGFGVAVL-NGKIYVVGGFDGTSALSSVERYDPETNQWTMV---APM 509 (571)
T ss_pred CCCccccceEEEEcCCCCceeecCCc---ccccccceEEEE-CCEEEEECCccCCCccceEEEEcCCCCceeEc---ccC
Confidence 88776789999999999999999866 899999998888 56799999988866777899999999999999 578
Q ss_pred CCCccccEEEEECCceecceeeeeeccCCCcEEEEEcCcCCC-CcccEEEEeCCCcceecccCC
Q 008611 396 PTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNGR-YNNEVHVLKPSHKSTLSSKMI 458 (559)
Q Consensus 396 p~~R~~hs~~~~~~~~~iG~s~~~~~~~~~~~l~v~GG~~~~-~~~~v~~~d~~~~~~~~~~~~ 458 (559)
..+|..+.++++++ .+|++||+++. +.+.|.+|||.++.|....-+
T Consensus 510 ~~~rs~~g~~~~~~-----------------~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~~ 556 (571)
T KOG4441|consen 510 TSPRSAVGVVVLGG-----------------KLYAVGGFDGNNNLNTVECYDPETDTWTEVTEP 556 (571)
T ss_pred ccccccccEEEECC-----------------EEEEEecccCccccceeEEcCCCCCceeeCCCc
Confidence 89999999999976 99999999886 889999999999988765543
No 4
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=3.9e-38 Score=288.50 Aligned_cols=256 Identities=29% Similarity=0.524 Sum_probs=227.0
Q ss_pred CcccceeEEEECCEEEEEccCCCCc-----ccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEE
Q 008611 184 KARYEHGAAVVQDKMYIYGGNHNGR-----YLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKL 258 (559)
Q Consensus 184 ~~r~~~~~~~~~~~lyv~GG~~~~~-----~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l 258 (559)
+.|.+|+++.+|.+||-|||++.+. ..-||.++|..+.+|.++++........++.|..|..|+||+.+.+++++
T Consensus 12 PrRVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~ 91 (392)
T KOG4693|consen 12 PRRVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKA 91 (392)
T ss_pred cccccceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceE
Confidence 4689999999999999999987653 23489999999999999998766666677778899999999999999999
Q ss_pred EEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCC-CCCcCceEEEECCCCceEE
Q 008611 259 LSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAK-RSLLNDLHILDLETMTWDE 337 (559)
Q Consensus 259 yv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~-~~~~~~~~~yd~~t~~W~~ 337 (559)
||+||.+.....+|.++.||+++++|.++...|-.|.+|.+|+++++++.+|||||+... ..+.++++.+|+.|.+|+.
T Consensus 92 yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~ 171 (392)
T KOG4693|consen 92 YVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWRE 171 (392)
T ss_pred EEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeee
Confidence 999999988788999999999999999999999999999999999999999999998543 3478999999999999999
Q ss_pred ecCCCCCCCcccccEEEEEcCCEEEEEcCCCC---------CCCcCceEEEECCCCeeEeccCCCCCCCCccccEEEEEC
Q 008611 338 IDAVGVPPSPRSDHAAAVHAERYLLIFGGGSH---------AACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIG 408 (559)
Q Consensus 338 ~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~---------~~~~~dv~~~d~~~~~W~~~~~~~~~p~~R~~hs~~~~~ 408 (559)
+.+.|.+|.-|-.|+++++. +.+|||||... ..+-+.|..+|+.|..|...+..+..|.+|..|++.+.+
T Consensus 172 ~~Tkg~PprwRDFH~a~~~~-~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYn 250 (392)
T KOG4693|consen 172 MHTKGDPPRWRDFHTASVID-GMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYN 250 (392)
T ss_pred hhccCCCchhhhhhhhhhcc-ceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEc
Confidence 99999999999999999985 67999999543 234467899999999999987777889999999999997
Q ss_pred CceecceeeeeeccCCCcEEEEEcCcCCC---CcccEEEEeCCCcceecccC
Q 008611 409 ENWFLGLSLVVSSYSGEDVIVAFGGYNGR---YNNEVHVLKPSHKSTLSSKM 457 (559)
Q Consensus 409 ~~~~iG~s~~~~~~~~~~~l~v~GG~~~~---~~~~v~~~d~~~~~~~~~~~ 457 (559)
+ .||+|||+++. ..+|+|+|||.+.-|.....
T Consensus 251 g-----------------~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~ 285 (392)
T KOG4693|consen 251 G-----------------KMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISV 285 (392)
T ss_pred c-----------------eEEEecccchhhhhhhcceeecccccchheeeec
Confidence 6 99999999985 78999999999997765443
No 5
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=1.3e-36 Score=311.67 Aligned_cols=259 Identities=22% Similarity=0.385 Sum_probs=206.9
Q ss_pred ceeccc----eEEecccCCCCCCc-ccceeEEEECCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCC
Q 008611 166 SVVVYD----QWIAPPISGQRPKA-RYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSP 240 (559)
Q Consensus 166 ~~~~~~----~W~~~~~~g~~p~~-r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~ 240 (559)
.++.|| +|..+++.+..|.. +.+|++++++++||||||......++++++||+.+++|+.++++. ..
T Consensus 51 ~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~--------~~ 122 (341)
T PLN02153 51 DLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLD--------EE 122 (341)
T ss_pred cEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCC--------CC
Confidence 456665 89998875544543 458999999999999999877777899999999999999987653 12
Q ss_pred CCCCCCccceeEEeCCEEEEEeccCCCC-----CCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCc
Q 008611 241 ALLTPCAGHSLIPWENKLLSIAGHTKDP-----SEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGE 315 (559)
Q Consensus 241 ~~p~~r~~~~~~~~~~~lyv~GG~~~~~-----~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~ 315 (559)
..|.+|.+|+++.++++||||||..... ..++++++||+.+++|+.++..+..|.+|.+|++++++++|||+||.
T Consensus 123 ~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~ 202 (341)
T PLN02153 123 GGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGF 202 (341)
T ss_pred CCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEecc
Confidence 3478999999999999999999986431 24578999999999999998766667899999999999999999997
Q ss_pred CCC-------CCCcCceEEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCC---------CCCCcCceEEE
Q 008611 316 DAK-------RSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGS---------HAACFNDLHVL 379 (559)
Q Consensus 316 ~~~-------~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~---------~~~~~~dv~~~ 379 (559)
+.. ...++++++||+.+++|+.+...+..|.+|..|+++++ +++||||||.. .....+++|+|
T Consensus 203 ~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~ 281 (341)
T PLN02153 203 ATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVV-GKYIIIFGGEVWPDLKGHLGPGTLSNEGYAL 281 (341)
T ss_pred ccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEE-CCEEEEECcccCCccccccccccccccEEEE
Confidence 421 12358899999999999999877778999999999888 56799999963 22346799999
Q ss_pred ECCCCeeEeccCCC--CCCCCccccEEEEECCceecceeeeeeccCCCcEEEEEcCcCC--CCcccEEEEeCC
Q 008611 380 DLQTMEWSRPTQQG--EIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNG--RYNNEVHVLKPS 448 (559)
Q Consensus 380 d~~~~~W~~~~~~~--~~p~~R~~hs~~~~~~~~~iG~s~~~~~~~~~~~l~v~GG~~~--~~~~~v~~~d~~ 448 (559)
|+.+++|+.+...+ ++|.+|..|+++.+.+ ++.||||||+++ ...+|+|+|+..
T Consensus 282 d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~---------------~~~~~~~gG~~~~~~~~~~~~~~~~~ 339 (341)
T PLN02153 282 DTETLVWEKLGECGEPAMPRGWTAYTTATVYG---------------KNGLLMHGGKLPTNERTDDLYFYAVN 339 (341)
T ss_pred EcCccEEEeccCCCCCCCCCccccccccccCC---------------cceEEEEcCcCCCCccccceEEEecc
Confidence 99999999986443 3344455455554433 458999999965 367999999864
No 6
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=1.5e-36 Score=322.57 Aligned_cols=255 Identities=22% Similarity=0.403 Sum_probs=213.4
Q ss_pred ceeccc----eEEecccCCCCCC-cccceeEEEECCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCC
Q 008611 166 SVVVYD----QWIAPPISGQRPK-ARYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSP 240 (559)
Q Consensus 166 ~~~~~~----~W~~~~~~g~~p~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~ 240 (559)
.+++|| +|..+++.+.+|. .|.+|++++++++||||||......++++|+||+.+++|+.++++.
T Consensus 194 ~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~---------- 263 (470)
T PLN02193 194 HLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVE---------- 263 (470)
T ss_pred cEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCC----------
Confidence 466665 9999887766665 4679999999999999999887778899999999999999997653
Q ss_pred CCCCCCccceeEEeCCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCC
Q 008611 241 ALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRS 320 (559)
Q Consensus 241 ~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~ 320 (559)
..|.+|.+|+++.++++||||||.... ...+++++||+.+++|+.+++.+.+|.+|.+|++++++++||++||.++.
T Consensus 264 ~~P~~R~~h~~~~~~~~iYv~GG~~~~-~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~-- 340 (470)
T PLN02193 264 EGPTPRSFHSMAADEENVYVFGGVSAT-ARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC-- 340 (470)
T ss_pred CCCCCccceEEEEECCEEEEECCCCCC-CCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC--
Confidence 347899999999999999999998764 46789999999999999998766788999999999999999999998654
Q ss_pred CcCceEEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCC---------CCCcCceEEEECCCCeeEeccC
Q 008611 321 LLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSH---------AACFNDLHVLDLQTMEWSRPTQ 391 (559)
Q Consensus 321 ~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~---------~~~~~dv~~~d~~~~~W~~~~~ 391 (559)
.++++++||+.+++|+.+...+..|.+|..|+++++ +++||||||... ...++++|+||+.+++|+.+..
T Consensus 341 ~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~ 419 (470)
T PLN02193 341 EVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAV-GKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDK 419 (470)
T ss_pred ccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEE-CCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEccc
Confidence 368999999999999999887778999999999888 567999999642 2356899999999999999865
Q ss_pred CC---CCCCCccccEEE--EECCceecceeeeeeccCCCcEEEEEcCcCC--CCcccEEEEeCCC
Q 008611 392 QG---EIPTPRAGHAGV--TIGENWFLGLSLVVSSYSGEDVIVAFGGYNG--RYNNEVHVLKPSH 449 (559)
Q Consensus 392 ~~---~~p~~R~~hs~~--~~~~~~~iG~s~~~~~~~~~~~l~v~GG~~~--~~~~~v~~~d~~~ 449 (559)
.+ ..|.+|..|+++ .+.+ ++.||+|||+++ ..++|+|+|++.+
T Consensus 420 ~~~~~~~P~~R~~~~~~~~~~~~---------------~~~~~~fGG~~~~~~~~~D~~~~~~~~ 469 (470)
T PLN02193 420 FGEEEETPSSRGWTASTTGTIDG---------------KKGLVMHGGKAPTNDRFDDLFFYGIDS 469 (470)
T ss_pred CCCCCCCCCCCccccceeeEEcC---------------CceEEEEcCCCCccccccceEEEecCC
Confidence 43 357888877543 2322 347999999964 5789999998654
No 7
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=100.00 E-value=3.8e-38 Score=304.59 Aligned_cols=250 Identities=23% Similarity=0.477 Sum_probs=216.8
Q ss_pred CCCCcccceeEEEE--CCEEEEEccCC-CC---cccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe
Q 008611 181 QRPKARYEHGAAVV--QDKMYIYGGNH-NG---RYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW 254 (559)
Q Consensus 181 ~~p~~r~~~~~~~~--~~~lyv~GG~~-~~---~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~ 254 (559)
.+|.||.++++++. .+.|++|||.. ++ ...||+|+||..+++|+++.. |+.|+||++|.++++
T Consensus 62 ~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~s-----------pn~P~pRsshq~va~ 130 (521)
T KOG1230|consen 62 PPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVS-----------PNAPPPRSSHQAVAV 130 (521)
T ss_pred CCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEecc-----------CCCcCCCccceeEEe
Confidence 58999999999887 46899999942 23 467999999999999999965 467999999999999
Q ss_pred C-CEEEEEeccCCCCC-----CcceEEEEECCCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCcC---CCCCCcCce
Q 008611 255 E-NKLLSIAGHTKDPS-----EIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGED---AKRSLLNDL 325 (559)
Q Consensus 255 ~-~~lyv~GG~~~~~~-----~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~---~~~~~~~~~ 325 (559)
. |.+|+|||...+++ ...++|.||+.+++|+.+...| .|.+|++|.++++.++|+||||+- ....++||+
T Consensus 131 ~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g-~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDv 209 (521)
T KOG1230|consen 131 PSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG-GPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDV 209 (521)
T ss_pred ccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCC-CCCCCccceeEEeeeeEEEEcceecCCCceEEeeee
Confidence 5 89999999866533 3679999999999999998775 899999999999999999999983 333578999
Q ss_pred EEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCC---------CCCCcCceEEEECCC-----CeeEeccC
Q 008611 326 HILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGS---------HAACFNDLHVLDLQT-----MEWSRPTQ 391 (559)
Q Consensus 326 ~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~---------~~~~~~dv~~~d~~~-----~~W~~~~~ 391 (559)
|+||++|-+|..+.+.|..|.||++|++.+...+.|||+||++ .+..++|+|.+++.+ ..|.++..
T Consensus 210 y~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp 289 (521)
T KOG1230|consen 210 YAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKP 289 (521)
T ss_pred EEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccC
Confidence 9999999999999998889999999999999777799999975 256789999999988 68999988
Q ss_pred CCCCCCCccccEEEEECCceecceeeeeeccCCCcEEEEEcCcC----------CCCcccEEEEeCCCcceecccCC
Q 008611 392 QGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYN----------GRYNNEVHVLKPSHKSTLSSKMI 458 (559)
Q Consensus 392 ~~~~p~~R~~hs~~~~~~~~~iG~s~~~~~~~~~~~l~v~GG~~----------~~~~~~v~~~d~~~~~~~~~~~~ 458 (559)
.+..|.||+++++++.-++ +-+.|||.- +.+.||+|.||+..+.|....+.
T Consensus 290 ~g~kPspRsgfsv~va~n~----------------kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~qlq 350 (521)
T KOG1230|consen 290 SGVKPSPRSGFSVAVAKNH----------------KALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQLQ 350 (521)
T ss_pred CCCCCCCCCceeEEEecCC----------------ceEEecceecccccchhhhhhhhhhhhheecccchhhHhhhc
Confidence 8899999999999998653 889999963 34789999999999988766554
No 8
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=1.8e-37 Score=284.10 Aligned_cols=236 Identities=27% Similarity=0.484 Sum_probs=209.8
Q ss_pred eEEecccC----------CCCCCcccceeEEEECCEEEEEccCCC-CcccCcEEEEEcCCCeEEEeeeccccCCCCCCCC
Q 008611 172 QWIAPPIS----------GQRPKARYEHGAAVVQDKMYIYGGNHN-GRYLSDMHILDLRSWAWSKIQAKAVAESTESPSP 240 (559)
Q Consensus 172 ~W~~~~~~----------g~~p~~r~~~~~~~~~~~lyv~GG~~~-~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~ 240 (559)
+|+++++. .-.|.-|++|+++.+++++||+||.+. ....|-++.||+.++.|++....+
T Consensus 55 RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G---------- 124 (392)
T KOG4693|consen 55 RWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEG---------- 124 (392)
T ss_pred eEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeeccccccccccceee----------
Confidence 89988761 124667999999999999999999876 567789999999999999887764
Q ss_pred CCCCCCccceeEEeCCEEEEEeccCCC-CCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCC-
Q 008611 241 ALLTPCAGHSLIPWENKLLSIAGHTKD-PSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAK- 318 (559)
Q Consensus 241 ~~p~~r~~~~~~~~~~~lyv~GG~~~~-~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~- 318 (559)
..|.+|.||++|++++.+|||||+... ...+++++.+|+.|.+|..+.+.|++|.-|..|+++++++.+|||||..+.
T Consensus 125 ~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~ 204 (392)
T KOG4693|consen 125 FVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDES 204 (392)
T ss_pred ecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccC
Confidence 679999999999999999999999765 467889999999999999999999999999999999999999999997532
Q ss_pred -------CCCcCceEEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCC--CCCcCceEEEECCCCeeEec
Q 008611 319 -------RSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSH--AACFNDLHVLDLQTMEWSRP 389 (559)
Q Consensus 319 -------~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~--~~~~~dv~~~d~~~~~W~~~ 389 (559)
..+++.|..+|+.|..|...+..+..|.+|..|++.++ ++.||||||+.+ +..++|+|+||+.+..|+.+
T Consensus 205 gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvY-ng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I 283 (392)
T KOG4693|consen 205 GPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVY-NGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVI 283 (392)
T ss_pred CCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEE-cceEEEecccchhhhhhhcceeecccccchheee
Confidence 23568899999999999999888888999999999998 567999999876 45689999999999999999
Q ss_pred cCCCCCCCCccccEEEEECCceecceeeeeeccCCCcEEEEEcCcC
Q 008611 390 TQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYN 435 (559)
Q Consensus 390 ~~~~~~p~~R~~hs~~~~~~~~~iG~s~~~~~~~~~~~l~v~GG~~ 435 (559)
...+..|.+|..+|+++.++ ++|+|||..
T Consensus 284 ~~~Gk~P~aRRRqC~~v~g~-----------------kv~LFGGTs 312 (392)
T KOG4693|consen 284 SVRGKYPSARRRQCSVVSGG-----------------KVYLFGGTS 312 (392)
T ss_pred eccCCCCCcccceeEEEECC-----------------EEEEecCCC
Confidence 99999999999999999976 899999964
No 9
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=3.3e-36 Score=325.12 Aligned_cols=244 Identities=11% Similarity=0.188 Sum_probs=209.6
Q ss_pred ceeccc----eEEecccCCCCCCcccceeEEEECCEEEEEccCC-CCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCC
Q 008611 166 SVVVYD----QWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNH-NGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSP 240 (559)
Q Consensus 166 ~~~~~~----~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~-~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~ 240 (559)
.++.|| +|..+++ +|.+|.+|+++++++.|||+||.. +...++++++||+.+++|..+++
T Consensus 273 ~v~~yd~~~~~W~~l~~---mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~------------ 337 (557)
T PHA02713 273 CILVYNINTMEYSVIST---IPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPP------------ 337 (557)
T ss_pred CEEEEeCCCCeEEECCC---CCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCC------------
Confidence 455664 8999984 899999999999999999999975 34567899999999999998855
Q ss_pred CCCCCCccceeEEeCCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCC-
Q 008611 241 ALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKR- 319 (559)
Q Consensus 241 ~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~- 319 (559)
+|.+|.+|+++.++|+||++||.... ...+++++|||.+++|+.++ ++|.+|.++++++++++||++||.+...
T Consensus 338 -m~~~R~~~~~~~~~g~IYviGG~~~~-~~~~sve~Ydp~~~~W~~~~---~mp~~r~~~~~~~~~g~IYviGG~~~~~~ 412 (557)
T PHA02713 338 -MIKNRCRFSLAVIDDTIYAIGGQNGT-NVERTIECYTMGDDKWKMLP---DMPIALSSYGMCVLDQYIYIIGGRTEHID 412 (557)
T ss_pred -CcchhhceeEEEECCEEEEECCcCCC-CCCceEEEEECCCCeEEECC---CCCcccccccEEEECCEEEEEeCCCcccc
Confidence 47899999999999999999998654 45788999999999999997 6899999999999999999999986432
Q ss_pred ----------------CCcCceEEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCC-cCceEEEECC
Q 008611 320 ----------------SLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAAC-FNDLHVLDLQ 382 (559)
Q Consensus 320 ----------------~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~-~~dv~~~d~~ 382 (559)
..++.+++|||.+++|+.++++ |.+|..++++++ +++|||+||.++... .+.+++|||.
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m---~~~r~~~~~~~~-~~~IYv~GG~~~~~~~~~~ve~Ydp~ 488 (557)
T PHA02713 413 YTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNF---WTGTIRPGVVSH-KDDIYVVCDIKDEKNVKTCIFRYNTN 488 (557)
T ss_pred cccccccccccccccccccceEEEECCCCCeEeecCCC---CcccccCcEEEE-CCEEEEEeCCCCCCccceeEEEecCC
Confidence 1257899999999999998754 788999999888 557999999764332 3468999999
Q ss_pred C-CeeEeccCCCCCCCCccccEEEEECCceecceeeeeeccCCCcEEEEEcCcCCCCcccEEEEeCCCcceecc
Q 008611 383 T-MEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSHKSTLSS 455 (559)
Q Consensus 383 ~-~~W~~~~~~~~~p~~R~~hs~~~~~~~~~iG~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~~d~~~~~~~~~ 455 (559)
+ ++|+.+ +++|.+|..++++++++ +||++||+++. .++.+||+.++.|...
T Consensus 489 ~~~~W~~~---~~m~~~r~~~~~~~~~~-----------------~iyv~Gg~~~~--~~~e~yd~~~~~W~~~ 540 (557)
T PHA02713 489 TYNGWELI---TTTESRLSALHTILHDN-----------------TIMMLHCYESY--MLQDTFNVYTYEWNHI 540 (557)
T ss_pred CCCCeeEc---cccCcccccceeEEECC-----------------EEEEEeeecce--eehhhcCcccccccch
Confidence 9 899998 58899999999999976 99999999873 5799999999988644
No 10
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=100.00 E-value=7.2e-36 Score=316.34 Aligned_cols=263 Identities=37% Similarity=0.629 Sum_probs=232.2
Q ss_pred ccceEEec-ccCCCCCCcccceeEEEECCEEEEEccCCCCcccCc--EEEEEcCCCeEEEeeeccccCCCCCCCCCCCCC
Q 008611 169 VYDQWIAP-PISGQRPKARYEHGAAVVQDKMYIYGGNHNGRYLSD--MHILDLRSWAWSKIQAKAVAESTESPSPALLTP 245 (559)
Q Consensus 169 ~~~~W~~~-~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~--v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~ 245 (559)
.+..|... ...+..|.+|.+|+++.+++++|||||........+ +|+||..+..|......+ ..|.+
T Consensus 43 ~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g----------~~p~~ 112 (482)
T KOG0379|consen 43 LFQPENLGCDVLGVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATG----------DEPSP 112 (482)
T ss_pred eeeeeccccccCCCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccC----------CCCCc
Confidence 33455554 356789999999999999999999999877666555 999999999999987765 55799
Q ss_pred CccceeEEeCCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCce
Q 008611 246 CAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDL 325 (559)
Q Consensus 246 r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~ 325 (559)
|.+|+++.++++||+|||........++++.||+.|++|+.+.+.+.+|++|.+|++++++++||||||.+.....+|++
T Consensus 113 r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl 192 (482)
T KOG0379|consen 113 RYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDL 192 (482)
T ss_pred ccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeee
Confidence 99999999999999999999766779999999999999999999999999999999999999999999998877679999
Q ss_pred EEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCC-CCCCcCceEEEECCCCeeEeccCCCCCCCCccccEE
Q 008611 326 HILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGS-HAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAG 404 (559)
Q Consensus 326 ~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~-~~~~~~dv~~~d~~~~~W~~~~~~~~~p~~R~~hs~ 404 (559)
|+||+.+.+|.++...|..|.||++|+++++.+. ++||||.. +..+++|+|+||+.+..|..+...+..|.+|++|++
T Consensus 193 ~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~-~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~ 271 (482)
T KOG0379|consen 193 HIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNK-LLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSL 271 (482)
T ss_pred eeeccccccceecccCCCCCCCCCCceEEEECCe-EEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeee
Confidence 9999999999999999999999999999999554 77777766 788899999999999999998888999999999999
Q ss_pred EEECCceecceeeeeeccCCCcEEEEEcCcCCC---CcccEEEEeCCCcceecccCCC
Q 008611 405 VTIGENWFLGLSLVVSSYSGEDVIVAFGGYNGR---YNNEVHVLKPSHKSTLSSKMIE 459 (559)
Q Consensus 405 ~~~~~~~~iG~s~~~~~~~~~~~l~v~GG~~~~---~~~~v~~~d~~~~~~~~~~~~~ 459 (559)
++.++ .++++||.... ...++|.|+.++..|.......
T Consensus 272 ~~~~~-----------------~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~~~ 312 (482)
T KOG0379|consen 272 TVSGD-----------------HLLLFGGGTDPKQEPLGDLYGLDLETLVWSKVESVG 312 (482)
T ss_pred EEECC-----------------EEEEEcCCcccccccccccccccccccceeeeeccc
Confidence 97755 89999998662 6889999999988776655443
No 11
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=4.3e-33 Score=302.94 Aligned_cols=241 Identities=18% Similarity=0.286 Sum_probs=202.5
Q ss_pred eEEecccCCCCCCcccceeEEEECCEEEEEccCCCC-cccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccce
Q 008611 172 QWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNHNG-RYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHS 250 (559)
Q Consensus 172 ~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~-~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~ 250 (559)
+|..++. +| .+..|+++++++.||++||.... ...+++++||+.+++|..+++ +|.+|.+|+
T Consensus 275 ~~~~~~~---~~-~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~-------------~~~~R~~~~ 337 (534)
T PHA03098 275 EINTIID---IH-YVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPE-------------LIYPRKNPG 337 (534)
T ss_pred hcccccC---cc-ccccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCC-------------CCcccccce
Confidence 5665542 33 24567899999999999997653 466799999999999988754 468999999
Q ss_pred eEEeCCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEEC
Q 008611 251 LIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDL 330 (559)
Q Consensus 251 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~ 330 (559)
++.++++||++||.... ...+++++||+.+++|+.++ ++|.+|.+|+++.++++||++||.......++++++||+
T Consensus 338 ~~~~~~~lyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~---~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~ 413 (534)
T PHA03098 338 VTVFNNRIYVIGGIYNS-ISLNTVESWKPGESKWREEP---PLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSL 413 (534)
T ss_pred EEEECCEEEEEeCCCCC-EecceEEEEcCCCCceeeCC---CcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeC
Confidence 99999999999998743 56789999999999999987 688999999999999999999998655545789999999
Q ss_pred CCCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCC---CcCceEEEECCCCeeEeccCCCCCCCCccccEEEEE
Q 008611 331 ETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAA---CFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTI 407 (559)
Q Consensus 331 ~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~---~~~dv~~~d~~~~~W~~~~~~~~~p~~R~~hs~~~~ 407 (559)
.+++|+.+.+ +|.+|.+|+++++ +++|||+||..... .++.+++||+.+++|..+. .++.+|.+|+++++
T Consensus 414 ~t~~W~~~~~---~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~ 486 (534)
T PHA03098 414 NTNKWSKGSP---LPISHYGGCAIYH-DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELS---SLNFPRINASLCIF 486 (534)
T ss_pred CCCeeeecCC---CCccccCceEEEE-CCEEEEECCccCCCCCcccceEEEecCCCCceeeCC---CCCcccccceEEEE
Confidence 9999999864 4889999998887 56799999965432 3677999999999999984 67889999999988
Q ss_pred CCceecceeeeeeccCCCcEEEEEcCcCCC-CcccEEEEeCCCcceecccC
Q 008611 408 GENWFLGLSLVVSSYSGEDVIVAFGGYNGR-YNNEVHVLKPSHKSTLSSKM 457 (559)
Q Consensus 408 ~~~~~iG~s~~~~~~~~~~~l~v~GG~~~~-~~~~v~~~d~~~~~~~~~~~ 457 (559)
++ .||++||.++. ..+++++||+.++.|.....
T Consensus 487 ~~-----------------~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 520 (534)
T PHA03098 487 NN-----------------KIYVVGGDKYEYYINEIEVYDDKTNTWTLFCK 520 (534)
T ss_pred CC-----------------EEEEEcCCcCCcccceeEEEeCCCCEEEecCC
Confidence 65 89999998765 47899999999998865543
No 12
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.6e-32 Score=295.12 Aligned_cols=233 Identities=23% Similarity=0.391 Sum_probs=205.8
Q ss_pred CCCcccceeEEEECCEEEEEccCCC-CcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEE
Q 008611 182 RPKARYEHGAAVVQDKMYIYGGNHN-GRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLS 260 (559)
Q Consensus 182 ~p~~r~~~~~~~~~~~lyv~GG~~~-~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv 260 (559)
++.+|..... ...+.||++||..+ +...+.+..||+.++.|..++++ |.+|..+++++++|+||+
T Consensus 272 ~~~~~t~~r~-~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m-------------~~~r~~~~~~~~~~~lYv 337 (571)
T KOG4441|consen 272 MQSPRTRPRR-SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPM-------------PSPRCRVGVAVLNGKLYV 337 (571)
T ss_pred ccCCCcccCc-CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCC-------------CcccccccEEEECCEEEE
Confidence 3444444433 45689999999886 78889999999999999999765 689999999999999999
Q ss_pred EeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCCceEEecC
Q 008611 261 IAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDA 340 (559)
Q Consensus 261 ~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~ 340 (559)
+||++.....++++++||+.+++|+.++ +|+.+|.+++++++++.||++||.++.. .++++++||+.+++|..+.+
T Consensus 338 ~GG~~~~~~~l~~ve~YD~~~~~W~~~a---~M~~~R~~~~v~~l~g~iYavGG~dg~~-~l~svE~YDp~~~~W~~va~ 413 (571)
T KOG4441|consen 338 VGGYDSGSDRLSSVERYDPRTNQWTPVA---PMNTKRSDFGVAVLDGKLYAVGGFDGEK-SLNSVECYDPVTNKWTPVAP 413 (571)
T ss_pred EccccCCCcccceEEEecCCCCceeccC---CccCccccceeEEECCEEEEEecccccc-ccccEEEecCCCCcccccCC
Confidence 9999853378899999999999999987 7899999999999999999999999766 58999999999999999976
Q ss_pred CCCCCCcccccEEEEEcCCEEEEEcCCCCCC-CcCceEEEECCCCeeEeccCCCCCCCCccccEEEEECCceecceeeee
Q 008611 341 VGVPPSPRSDHAAAVHAERYLLIFGGGSHAA-CFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVV 419 (559)
Q Consensus 341 ~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~-~~~dv~~~d~~~~~W~~~~~~~~~p~~R~~hs~~~~~~~~~iG~s~~~ 419 (559)
+ +.+|++|+++++ +++||++||.++.. +++.+.+|||.+++|+.+ ++++.+|.+|+++++++
T Consensus 414 m---~~~r~~~gv~~~-~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~---~~M~~~R~~~g~a~~~~---------- 476 (571)
T KOG4441|consen 414 M---LTRRSGHGVAVL-GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLI---APMNTRRSGFGVAVLNG---------- 476 (571)
T ss_pred C---CcceeeeEEEEE-CCEEEEEcCcCCCccccceEEEEcCCCCceeec---CCcccccccceEEEECC----------
Confidence 5 679999999998 56799999988777 899999999999999999 58999999999999976
Q ss_pred eccCCCcEEEEEcCcCCC-CcccEEEEeCCCcceeccc
Q 008611 420 SSYSGEDVIVAFGGYNGR-YNNEVHVLKPSHKSTLSSK 456 (559)
Q Consensus 420 ~~~~~~~~l~v~GG~~~~-~~~~v~~~d~~~~~~~~~~ 456 (559)
.||++||+++. ....|.+|||.++.|....
T Consensus 477 -------~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~ 507 (571)
T KOG4441|consen 477 -------KIYVVGGFDGTSALSSVERYDPETNQWTMVA 507 (571)
T ss_pred -------EEEEECCccCCCccceEEEEcCCCCceeEcc
Confidence 99999999984 5677999999999887764
No 13
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=5e-32 Score=275.63 Aligned_cols=225 Identities=19% Similarity=0.246 Sum_probs=184.1
Q ss_pred eEEecccCCCCCCcccceeEEEECCEEEEEccCCCCcccCcEEEEEcCCCeEE-EeeeccccCCCCCCCCCCCCCCccce
Q 008611 172 QWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWS-KIQAKAVAESTESPSPALLTPCAGHS 250 (559)
Q Consensus 172 ~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~-~~~~~~~~~~~~~~~~~~p~~r~~~~ 250 (559)
+|..++ .+|.+|..++++++++.||++||.++...++++++||+.+++|. ..... +++|.+|.+|+
T Consensus 52 ~W~~~~---~lp~~r~~~~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~----------~~lp~~~~~~~ 118 (323)
T TIGR03548 52 KWVKDG---QLPYEAAYGASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETI----------GNLPFTFENGS 118 (323)
T ss_pred eEEEcc---cCCccccceEEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEc----------CCCCcCccCce
Confidence 698887 48999998999999999999999887778899999999999983 11111 45688999999
Q ss_pred eEEeCCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCC-CCccceEEEEECCEEEEEcCcCCCCCCcCceEEEE
Q 008611 251 LIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPP-VSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILD 329 (559)
Q Consensus 251 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p-~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd 329 (559)
++.++++|||+||.... ...+++++||+.+++|+.++ ++| .+|..+++++++++||||||.+... .+++++||
T Consensus 119 ~~~~~~~iYv~GG~~~~-~~~~~v~~yd~~~~~W~~~~---~~p~~~r~~~~~~~~~~~iYv~GG~~~~~--~~~~~~yd 192 (323)
T TIGR03548 119 ACYKDGTLYVGGGNRNG-KPSNKSYLFNLETQEWFELP---DFPGEPRVQPVCVKLQNELYVFGGGSNIA--YTDGYKYS 192 (323)
T ss_pred EEEECCEEEEEeCcCCC-ccCceEEEEcCCCCCeeECC---CCCCCCCCcceEEEECCEEEEEcCCCCcc--ccceEEEe
Confidence 99999999999997543 45789999999999999997 455 4799999999999999999986542 46789999
Q ss_pred CCCCceEEecCCC--CCCCcccccEEEEEcCCEEEEEcCCCCCC--------------------------------CcCc
Q 008611 330 LETMTWDEIDAVG--VPPSPRSDHAAAVHAERYLLIFGGGSHAA--------------------------------CFND 375 (559)
Q Consensus 330 ~~t~~W~~~~~~~--~~p~~r~~~~~~~~~~~~l~v~GG~~~~~--------------------------------~~~d 375 (559)
+.+++|+.+..+. ..|..+..++++++.+++|||+||.+... ..++
T Consensus 193 ~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (323)
T TIGR03548 193 PKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRK 272 (323)
T ss_pred cCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCce
Confidence 9999999997653 23445556666666678899999976321 1367
Q ss_pred eEEEECCCCeeEeccCCCCCC-CCccccEEEEECCceecceeeeeeccCCCcEEEEEcCcC
Q 008611 376 LHVLDLQTMEWSRPTQQGEIP-TPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYN 435 (559)
Q Consensus 376 v~~~d~~~~~W~~~~~~~~~p-~~R~~hs~~~~~~~~~iG~s~~~~~~~~~~~l~v~GG~~ 435 (559)
+++||+.+++|+.+. .+| .+|.+++++++++ .||++||..
T Consensus 273 v~~yd~~~~~W~~~~---~~p~~~r~~~~~~~~~~-----------------~iyv~GG~~ 313 (323)
T TIGR03548 273 ILIYNVRTGKWKSIG---NSPFFARCGAALLLTGN-----------------NIFSINGEL 313 (323)
T ss_pred EEEEECCCCeeeEcc---cccccccCchheEEECC-----------------EEEEEeccc
Confidence 999999999999985 455 5899999999976 899999964
No 14
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=100.00 E-value=5.7e-32 Score=286.62 Aligned_cols=254 Identities=37% Similarity=0.669 Sum_probs=222.7
Q ss_pred eEEecccCCCCCCcccceeEEEECCEEEEEccCCC-CcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccce
Q 008611 172 QWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNHN-GRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHS 250 (559)
Q Consensus 172 ~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~-~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~ 250 (559)
.|......|..|.+|.+|++++++++||+|||.+. ...+++++.||+.|++|..+.+.+ .+|++|.+|+
T Consensus 99 ~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~----------~~P~~r~~Hs 168 (482)
T KOG0379|consen 99 LWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTG----------DPPPPRAGHS 168 (482)
T ss_pred ccccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcC----------CCCCCcccce
Confidence 89999999999999999999999999999999874 677899999999999999998865 4799999999
Q ss_pred eEEeCCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEEC
Q 008611 251 LIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDL 330 (559)
Q Consensus 251 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~ 330 (559)
++.++++||||||.+......+++|+||+.+.+|.++.+.|+.|.||.+|++++++++++||||.+....+++|+|+||+
T Consensus 169 ~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl 248 (482)
T KOG0379|consen 169 ATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDL 248 (482)
T ss_pred EEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEeccccCCceecceEeeec
Confidence 99999999999999988778999999999999999999999999999999999999999999999866668999999999
Q ss_pred CCCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCC--CCcCceEEEECCCCeeEeccCCC-CCCCCccccEEEEE
Q 008611 331 ETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHA--ACFNDLHVLDLQTMEWSRPTQQG-EIPTPRAGHAGVTI 407 (559)
Q Consensus 331 ~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~--~~~~dv~~~d~~~~~W~~~~~~~-~~p~~R~~hs~~~~ 407 (559)
.+..|..+...+..|.+|++|++++. +.+++|+||.... ..+.++|.||..+..|..+...+ ..|.+|..|+.+.+
T Consensus 249 ~~~~W~~~~~~g~~p~~R~~h~~~~~-~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 327 (482)
T KOG0379|consen 249 STWEWKLLPTGGDLPSPRSGHSLTVS-GDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKVESVGVVRPSPRLGHAAELI 327 (482)
T ss_pred ccceeeeccccCCCCCCcceeeeEEE-CCEEEEEcCCcccccccccccccccccccceeeeeccccccccccccccceee
Confidence 99999999888999999999999955 6679999997764 25889999999999999998766 67899999988887
Q ss_pred CCceecceeeeeeccCCCcEEEEEcCcC--CCCcccEEEEeCCC
Q 008611 408 GENWFLGLSLVVSSYSGEDVIVAFGGYN--GRYNNEVHVLKPSH 449 (559)
Q Consensus 408 ~~~~~iG~s~~~~~~~~~~~l~v~GG~~--~~~~~~v~~~d~~~ 449 (559)
... +...+.++||.. +...++++.+....
T Consensus 328 ~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (482)
T KOG0379|consen 328 DEL-------------GKDGLGILGGNQILGERLADVFSLQIKL 358 (482)
T ss_pred ccC-------------CccceeeecCccccccchhhcccccccc
Confidence 542 233677777743 34556666555433
No 15
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=3.9e-31 Score=271.88 Aligned_cols=234 Identities=21% Similarity=0.358 Sum_probs=182.6
Q ss_pred ceEEecccCCCCC-CcccceeEEEECCEEEEEccCCCC------cccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCC
Q 008611 171 DQWIAPPISGQRP-KARYEHGAAVVQDKMYIYGGNHNG------RYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALL 243 (559)
Q Consensus 171 ~~W~~~~~~g~~p-~~r~~~~~~~~~~~lyv~GG~~~~------~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p 243 (559)
++|..+++ +| .+|.+|++++++++|||+||.... ..++++++||+.+++|+.++. ++|
T Consensus 41 ~~W~~l~~---~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~------------~~p 105 (346)
T TIGR03547 41 KGWQKIAD---FPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDT------------RSP 105 (346)
T ss_pred CCceECCC---CCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCC------------CCC
Confidence 48999884 77 589999999999999999997532 257899999999999999853 236
Q ss_pred CCCccceeE-EeCCEEEEEeccCCCC---------------------------------CCcceEEEEECCCCeEEEecc
Q 008611 244 TPCAGHSLI-PWENKLLSIAGHTKDP---------------------------------SEIIQVKVFDLQTCSWSTLKT 289 (559)
Q Consensus 244 ~~r~~~~~~-~~~~~lyv~GG~~~~~---------------------------------~~~~~v~~yd~~t~~W~~~~~ 289 (559)
.+|.+|+++ .++++||++||..... ...+++++||+.+++|+.++
T Consensus 106 ~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~- 184 (346)
T TIGR03547 106 VGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLG- 184 (346)
T ss_pred CcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECc-
Confidence 778888877 6899999999986320 01478999999999999997
Q ss_pred CCCCCC-CccceEEEEECCEEEEEcCcCCCCCCcCceEEEEC--CCCceEEecCCCCCCCcc-------cccEEEEEcCC
Q 008611 290 YGKPPV-SRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDL--ETMTWDEIDAVGVPPSPR-------SDHAAAVHAER 359 (559)
Q Consensus 290 ~g~~p~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~--~t~~W~~~~~~~~~p~~r-------~~~~~~~~~~~ 359 (559)
++|. +|.+++++.++++||||||.........+++.|++ .+++|+.+..+ |.+| ..|+++++ ++
T Consensus 185 --~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m---~~~r~~~~~~~~~~~a~~~-~~ 258 (346)
T TIGR03547 185 --ENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPL---PPPKSSSQEGLAGAFAGIS-NG 258 (346)
T ss_pred --cCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCC---CCCCCCccccccEEeeeEE-CC
Confidence 5675 68899999999999999998644323455666654 67799998765 3333 45556665 66
Q ss_pred EEEEEcCCCCCC-----------------CcCceEEEECCCCeeEeccCCCCCCCCccccEEEEECCceecceeeeeecc
Q 008611 360 YLLIFGGGSHAA-----------------CFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSY 422 (559)
Q Consensus 360 ~l~v~GG~~~~~-----------------~~~dv~~~d~~~~~W~~~~~~~~~p~~R~~hs~~~~~~~~~iG~s~~~~~~ 422 (559)
+|||+||..... ....+.+||+.+++|+.+ +++|.+|..++++++++
T Consensus 259 ~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~---~~lp~~~~~~~~~~~~~------------- 322 (346)
T TIGR03547 259 VLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKV---GKLPQGLAYGVSVSWNN------------- 322 (346)
T ss_pred EEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCccccc---CCCCCCceeeEEEEcCC-------------
Confidence 799999964211 123588999999999988 47889999998888866
Q ss_pred CCCcEEEEEcCcCC--CCcccEEEEe
Q 008611 423 SGEDVIVAFGGYNG--RYNNEVHVLK 446 (559)
Q Consensus 423 ~~~~~l~v~GG~~~--~~~~~v~~~d 446 (559)
.|||+||.+. ...++|+.+.
T Consensus 323 ----~iyv~GG~~~~~~~~~~v~~~~ 344 (346)
T TIGR03547 323 ----GVLLIGGENSGGKAVTDVYLLS 344 (346)
T ss_pred ----EEEEEeccCCCCCEeeeEEEEE
Confidence 9999999864 4677887664
No 16
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.98 E-value=7.8e-31 Score=271.85 Aligned_cols=241 Identities=20% Similarity=0.341 Sum_probs=186.1
Q ss_pred ceEEecccCCCCC-CcccceeEEEECCEEEEEccCCC------CcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCC
Q 008611 171 DQWIAPPISGQRP-KARYEHGAAVVQDKMYIYGGNHN------GRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALL 243 (559)
Q Consensus 171 ~~W~~~~~~g~~p-~~r~~~~~~~~~~~lyv~GG~~~------~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p 243 (559)
++|..+++ +| .+|.+|++++++++|||+||... ...++++++||+.+++|+.++++ .|
T Consensus 62 ~~W~~l~~---~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~------------~p 126 (376)
T PRK14131 62 KGWTKIAA---FPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTR------------SP 126 (376)
T ss_pred CCeEECCc---CCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCC------------CC
Confidence 47998874 55 58999999999999999999754 24578999999999999998642 36
Q ss_pred CCCccceeEE-eCCEEEEEeccCCCC---------------------------------CCcceEEEEECCCCeEEEecc
Q 008611 244 TPCAGHSLIP-WENKLLSIAGHTKDP---------------------------------SEIIQVKVFDLQTCSWSTLKT 289 (559)
Q Consensus 244 ~~r~~~~~~~-~~~~lyv~GG~~~~~---------------------------------~~~~~v~~yd~~t~~W~~~~~ 289 (559)
.++.+|+++. .+++||++||..... ...+++++||+.+++|+.+.
T Consensus 127 ~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~- 205 (376)
T PRK14131 127 VGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAG- 205 (376)
T ss_pred CcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECC-
Confidence 7788888887 799999999975310 12478999999999999986
Q ss_pred CCCCCC-CccceEEEEECCEEEEEcCcCCCCCCcCceEE--EECCCCceEEecCCCCCCCccc--------ccEEEEEcC
Q 008611 290 YGKPPV-SRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHI--LDLETMTWDEIDAVGVPPSPRS--------DHAAAVHAE 358 (559)
Q Consensus 290 ~g~~p~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~--yd~~t~~W~~~~~~~~~p~~r~--------~~~~~~~~~ 358 (559)
++|. +|.+++++.++++|||+||.........+++. ||+.+++|..+..+ |.+|. .+.++++ +
T Consensus 206 --~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~---p~~~~~~~~~~~~~~~a~~~-~ 279 (376)
T PRK14131 206 --ESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDL---PPAPGGSSQEGVAGAFAGYS-N 279 (376)
T ss_pred --cCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCC---CCCCcCCcCCccceEeceeE-C
Confidence 5674 78889999999999999997544333455554 56788999998755 44442 2223444 6
Q ss_pred CEEEEEcCCCCCC-----------------CcCceEEEECCCCeeEeccCCCCCCCCccccEEEEECCceecceeeeeec
Q 008611 359 RYLLIFGGGSHAA-----------------CFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSS 421 (559)
Q Consensus 359 ~~l~v~GG~~~~~-----------------~~~dv~~~d~~~~~W~~~~~~~~~p~~R~~hs~~~~~~~~~iG~s~~~~~ 421 (559)
++|||+||..... ....+.+||+.+++|+.+ +.+|.+|.+|+++++++
T Consensus 280 ~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~---~~lp~~r~~~~av~~~~------------ 344 (376)
T PRK14131 280 GVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKV---GELPQGLAYGVSVSWNN------------ 344 (376)
T ss_pred CEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCccccc---CcCCCCccceEEEEeCC------------
Confidence 6799999964211 012467899999999988 57899999999888866
Q ss_pred cCCCcEEEEEcCcCC--CCcccEEEEeCCCccee
Q 008611 422 YSGEDVIVAFGGYNG--RYNNEVHVLKPSHKSTL 453 (559)
Q Consensus 422 ~~~~~~l~v~GG~~~--~~~~~v~~~d~~~~~~~ 453 (559)
.|||+||... ...++|++|++..+.+.
T Consensus 345 -----~iyv~GG~~~~~~~~~~v~~~~~~~~~~~ 373 (376)
T PRK14131 345 -----GVLLIGGETAGGKAVSDVTLLSWDGKKLT 373 (376)
T ss_pred -----EEEEEcCCCCCCcEeeeEEEEEEcCCEEE
Confidence 9999999753 46789999998876543
No 17
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.98 E-value=1.7e-30 Score=264.35 Aligned_cols=238 Identities=21% Similarity=0.308 Sum_probs=183.9
Q ss_pred CcccceeEEEECCEEEEEccCCCC----------cccCcEEEEEcCC--CeEEEeeeccccCCCCCCCCCCCCCCcccee
Q 008611 184 KARYEHGAAVVQDKMYIYGGNHNG----------RYLSDMHILDLRS--WAWSKIQAKAVAESTESPSPALLTPCAGHSL 251 (559)
Q Consensus 184 ~~r~~~~~~~~~~~lyv~GG~~~~----------~~~~~v~~yd~~t--~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~ 251 (559)
..+.++.++++++.|||+||.+.. ..++++++|+... .+|..+++ +|.+|..|++
T Consensus 2 ~~~~g~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~-------------lp~~r~~~~~ 68 (323)
T TIGR03548 2 LGVAGCYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQ-------------LPYEAAYGAS 68 (323)
T ss_pred CceeeEeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEccc-------------CCccccceEE
Confidence 567889999999999999997543 3457899986333 37988754 4688988889
Q ss_pred EEeCCEEEEEeccCCCCCCcceEEEEECCCCeEE-EeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEEC
Q 008611 252 IPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWS-TLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDL 330 (559)
Q Consensus 252 ~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~-~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~ 330 (559)
+.++++||++||.... ..++++++||+.+++|. .....+++|.+|..|++++++++|||+||..... .++++++||+
T Consensus 69 ~~~~~~lyviGG~~~~-~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~-~~~~v~~yd~ 146 (323)
T TIGR03548 69 VSVENGIYYIGGSNSS-ERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGK-PSNKSYLFNL 146 (323)
T ss_pred EEECCEEEEEcCCCCC-CCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCc-cCceEEEEcC
Confidence 9999999999998754 56789999999999983 1222237899999999999999999999985433 4789999999
Q ss_pred CCCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEeccCCC--CCCCCccccEEEEEC
Q 008611 331 ETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQG--EIPTPRAGHAGVTIG 408 (559)
Q Consensus 331 ~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~~~~~--~~p~~R~~hs~~~~~ 408 (559)
.+++|+.++.. +..+|..|+++++ +++||||||.+... ..++++||+.+++|+.+.... ..|..+.+++++++.
T Consensus 147 ~~~~W~~~~~~--p~~~r~~~~~~~~-~~~iYv~GG~~~~~-~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~ 222 (323)
T TIGR03548 147 ETQEWFELPDF--PGEPRVQPVCVKL-QNELYVFGGGSNIA-YTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKIN 222 (323)
T ss_pred CCCCeeECCCC--CCCCCCcceEEEE-CCEEEEEcCCCCcc-ccceEEEecCCCeeEECCCCCCCCCceeccceeEEEEC
Confidence 99999998754 1246888888777 56799999976433 467899999999999986432 234444556555553
Q ss_pred CceecceeeeeeccCCCcEEEEEcCcCCC---------------------------------CcccEEEEeCCCcceecc
Q 008611 409 ENWFLGLSLVVSSYSGEDVIVAFGGYNGR---------------------------------YNNEVHVLKPSHKSTLSS 455 (559)
Q Consensus 409 ~~~~iG~s~~~~~~~~~~~l~v~GG~~~~---------------------------------~~~~v~~~d~~~~~~~~~ 455 (559)
+ +.|||+||.++. +.+++++||+.++.|...
T Consensus 223 ~----------------~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 286 (323)
T TIGR03548 223 E----------------SLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSI 286 (323)
T ss_pred C----------------CEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEc
Confidence 2 289999998742 236799999999988765
Q ss_pred c
Q 008611 456 K 456 (559)
Q Consensus 456 ~ 456 (559)
.
T Consensus 287 ~ 287 (323)
T TIGR03548 287 G 287 (323)
T ss_pred c
Confidence 4
No 18
>PHA02790 Kelch-like protein; Provisional
Probab=99.98 E-value=1.2e-30 Score=278.15 Aligned_cols=209 Identities=18% Similarity=0.248 Sum_probs=182.5
Q ss_pred EEEECCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCCCCC
Q 008611 191 AAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSE 270 (559)
Q Consensus 191 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~ 270 (559)
++..++.||++||.++...++.+++||+.+++|..++++ +.+|..++++.++++||++||...
T Consensus 267 ~~~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m-------------~~~r~~~~~v~~~~~iYviGG~~~---- 329 (480)
T PHA02790 267 STHVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPM-------------NSPRLYASGVPANNKLYVVGGLPN---- 329 (480)
T ss_pred eEEECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCC-------------CchhhcceEEEECCEEEEECCcCC----
Confidence 345899999999987667788999999999999999654 689999999999999999999753
Q ss_pred cceEEEEECCCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccc
Q 008611 271 IIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSD 350 (559)
Q Consensus 271 ~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~ 350 (559)
.+++++||+.+++|+.++ ++|.+|.++++++++++||++||.+.. .+.+.+||+.+++|+.++++ |.+|..
T Consensus 330 ~~sve~ydp~~n~W~~~~---~l~~~r~~~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~~m---~~~r~~ 400 (480)
T PHA02790 330 PTSVERWFHGDAAWVNMP---SLLKPRCNPAVASINNVIYVIGGHSET---DTTTEYLLPNHDQWQFGPST---YYPHYK 400 (480)
T ss_pred CCceEEEECCCCeEEECC---CCCCCCcccEEEEECCEEEEecCcCCC---CccEEEEeCCCCEEEeCCCC---CCcccc
Confidence 256899999999999997 689999999999999999999998643 36789999999999998654 789999
Q ss_pred cEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEeccCCCCCCCCccccEEEEECCceecceeeeeeccCCCcEEEE
Q 008611 351 HAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVA 430 (559)
Q Consensus 351 ~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~~~~~~~p~~R~~hs~~~~~~~~~iG~s~~~~~~~~~~~l~v 430 (559)
|+++++ +++|||+||. +.+||+.+++|+.+ ++++.+|.+++++++++ +||+
T Consensus 401 ~~~~~~-~~~IYv~GG~--------~e~ydp~~~~W~~~---~~m~~~r~~~~~~v~~~-----------------~IYv 451 (480)
T PHA02790 401 SCALVF-GRRLFLVGRN--------AEFYCESSNTWTLI---DDPIYPRDNPELIIVDN-----------------KLLL 451 (480)
T ss_pred ceEEEE-CCEEEEECCc--------eEEecCCCCcEeEc---CCCCCCccccEEEEECC-----------------EEEE
Confidence 998887 5679999984 57899999999998 47889999999999976 9999
Q ss_pred EcCcCCC-CcccEEEEeCCCcceec
Q 008611 431 FGGYNGR-YNNEVHVLKPSHKSTLS 454 (559)
Q Consensus 431 ~GG~~~~-~~~~v~~~d~~~~~~~~ 454 (559)
+||+++. ..+.+.+||+.++.|..
T Consensus 452 iGG~~~~~~~~~ve~Yd~~~~~W~~ 476 (480)
T PHA02790 452 IGGFYRGSYIDTIEVYNNRTYSWNI 476 (480)
T ss_pred ECCcCCCcccceEEEEECCCCeEEe
Confidence 9998753 46789999999998854
No 19
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=1.3e-30 Score=257.78 Aligned_cols=257 Identities=28% Similarity=0.535 Sum_probs=219.8
Q ss_pred eEEecc-cCCCCCCcccceeEEEECCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccce
Q 008611 172 QWIAPP-ISGQRPKARYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHS 250 (559)
Q Consensus 172 ~W~~~~-~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~ 250 (559)
.|+.+. .+|+.|.+|.+|-++++..-|.||||- +....+.+++||..+++|..-+..+ +.|++++.|+
T Consensus 18 rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGG-NEGiiDELHvYNTatnqWf~PavrG----------DiPpgcAA~G 86 (830)
T KOG4152|consen 18 RWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGG-NEGIIDELHVYNTATNQWFAPAVRG----------DIPPGCAAFG 86 (830)
T ss_pred ceEEEecccCCCCCccccchheeeeeeEEEecCC-cccchhhhhhhccccceeecchhcC----------CCCCchhhcc
Confidence 799765 468899999999999999999999993 4456789999999999999776654 7899999999
Q ss_pred eEEeCCEEEEEeccCCCCCCcceEEEEECCCCeEEEec----cCCCCCCCccceEEEEECCEEEEEcCcCC--------C
Q 008611 251 LIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLK----TYGKPPVSRGGQSVTLVGTSLVIFGGEDA--------K 318 (559)
Q Consensus 251 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~----~~g~~p~~r~~~~~~~~~~~lyv~GG~~~--------~ 318 (559)
++..+.+||+|||...-+.+.|+++.+.-.-..|.++. ..|.+|.||-+|+..+++++.|+|||..+ -
T Consensus 87 fvcdGtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNv 166 (830)
T KOG4152|consen 87 FVCDGTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNV 166 (830)
T ss_pred eEecCceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCccccc
Confidence 99999999999999988899999988877778888874 35788999999999999999999999632 1
Q ss_pred CCCcCceEEEECCC----CceEEecCCCCCCCcccccEEEEEc-----CCEEEEEcCCCCCCCcCceEEEECCCCeeEec
Q 008611 319 RSLLNDLHILDLET----MTWDEIDAVGVPPSPRSDHAAAVHA-----ERYLLIFGGGSHAACFNDLHVLDLQTMEWSRP 389 (559)
Q Consensus 319 ~~~~~~~~~yd~~t----~~W~~~~~~~~~p~~r~~~~~~~~~-----~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~ 389 (559)
-+++||+|++++.- -.|..+...|..|.+|..|+++++. ..+||||||.+ +..+.|+|.+|+++.+|.+.
T Consensus 167 PrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~-G~RLgDLW~Ldl~Tl~W~kp 245 (830)
T KOG4152|consen 167 PRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMS-GCRLGDLWTLDLDTLTWNKP 245 (830)
T ss_pred chhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccc-cccccceeEEecceeecccc
Confidence 24789999999873 3599988889999999999999984 23799999965 45589999999999999999
Q ss_pred cCCCCCCCCccccEEEEECCceecceeeeeeccCCCcEEEEEcCcC-----C----------CCcccEEEEeCCCcceec
Q 008611 390 TQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYN-----G----------RYNNEVHVLKPSHKSTLS 454 (559)
Q Consensus 390 ~~~~~~p~~R~~hs~~~~~~~~~iG~s~~~~~~~~~~~l~v~GG~~-----~----------~~~~~v~~~d~~~~~~~~ 454 (559)
...+..|.||+-|+++++++ +||||||+- . ...+++-++|+.+..|..
T Consensus 246 ~~~G~~PlPRSLHsa~~IGn-----------------KMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~t 308 (830)
T KOG4152|consen 246 SLSGVAPLPRSLHSATTIGN-----------------KMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWET 308 (830)
T ss_pred cccCCCCCCcccccceeecc-----------------eeEEecceeeeeccccccccccceeeeccceeeeeecchheee
Confidence 98899999999999999977 999999972 1 125678899999988865
Q ss_pred ccC
Q 008611 455 SKM 457 (559)
Q Consensus 455 ~~~ 457 (559)
.-+
T Consensus 309 l~~ 311 (830)
T KOG4152|consen 309 LLM 311 (830)
T ss_pred eee
Confidence 543
No 20
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=2e-30 Score=256.45 Aligned_cols=258 Identities=30% Similarity=0.590 Sum_probs=217.3
Q ss_pred Ccceeccc----eEEecccCCCCCCcccceeEEEECCEEEEEccCC-CCcccCcEEEEEcCCCeEEEeeeccccCCCCCC
Q 008611 164 LGSVVVYD----QWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNH-NGRYLSDMHILDLRSWAWSKIQAKAVAESTESP 238 (559)
Q Consensus 164 ~~~~~~~~----~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~-~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~ 238 (559)
++++.+|| +|.....-|+.|.+-..|..+..|.+||+|||.- -+++.||+|.+......|+++.+.. ..
T Consensus 56 iDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~------p~ 129 (830)
T KOG4152|consen 56 IDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKT------PK 129 (830)
T ss_pred hhhhhhhccccceeecchhcCCCCCchhhcceEecCceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCC------CC
Confidence 34566675 9999999999999999999999999999999964 4789999999988889999998765 22
Q ss_pred CCCCCCCCccceeEEeCCEEEEEeccCCC--------CCCcceEEEEECCCC----eEEEeccCCCCCCCccceEEEEE-
Q 008611 239 SPALLTPCAGHSLIPWENKLLSIAGHTKD--------PSEIIQVKVFDLQTC----SWSTLKTYGKPPVSRGGQSVTLV- 305 (559)
Q Consensus 239 ~~~~p~~r~~~~~~~~~~~lyv~GG~~~~--------~~~~~~v~~yd~~t~----~W~~~~~~g~~p~~r~~~~~~~~- 305 (559)
..++|.+|.||+...++++.|+|||...+ +.++++++.+++.-+ .|..+.+.|..|.+|..|+++.+
T Consensus 130 nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~ 209 (830)
T KOG4152|consen 130 NGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYT 209 (830)
T ss_pred CCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEE
Confidence 36779999999999999999999997643 357999999998854 49999999999999999999987
Q ss_pred -----CCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCC-----------
Q 008611 306 -----GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSH----------- 369 (559)
Q Consensus 306 -----~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~----------- 369 (559)
..++|||||..+-+ +.|+|.+|++|..|.++...|..|.||.-|+++.+ ++++|||||+-.
T Consensus 210 eKDs~~skmvvyGGM~G~R--LgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~I-GnKMyvfGGWVPl~~~~~~~~~h 286 (830)
T KOG4152|consen 210 EKDSKKSKMVVYGGMSGCR--LGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTI-GNKMYVFGGWVPLVMDDVKVATH 286 (830)
T ss_pred eccCCcceEEEEccccccc--ccceeEEecceeecccccccCCCCCCcccccceee-cceeEEecceeeeeccccccccc
Confidence 23899999997664 89999999999999999999999999999999998 556999999421
Q ss_pred ---CCCcCceEEEECCCCeeEeccC----CCCCCCCccccEEEEECCceecceeeeeeccCCCcEEEEEcCcCCC---C-
Q 008611 370 ---AACFNDLHVLDLQTMEWSRPTQ----QGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNGR---Y- 438 (559)
Q Consensus 370 ---~~~~~dv~~~d~~~~~W~~~~~----~~~~p~~R~~hs~~~~~~~~~iG~s~~~~~~~~~~~l~v~GG~~~~---~- 438 (559)
=.|.+.+-++|+++..|..+-. ....|.+|.+||++.++. +||+..|.+|. +
T Consensus 287 ekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAigt-----------------RlYiWSGRDGYrKAwn 349 (830)
T KOG4152|consen 287 EKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIGT-----------------RLYIWSGRDGYRKAWN 349 (830)
T ss_pred cceeeeccceeeeeecchheeeeeeccccccccccccccceeEEecc-----------------EEEEEeccchhhHhhc
Confidence 1467789999999999998722 123789999999999976 99999998763 2
Q ss_pred ----cccEEEEeC
Q 008611 439 ----NNEVHVLKP 447 (559)
Q Consensus 439 ----~~~v~~~d~ 447 (559)
..|+|.+|.
T Consensus 350 nQVCCkDlWyLdT 362 (830)
T KOG4152|consen 350 NQVCCKDLWYLDT 362 (830)
T ss_pred cccchhhhhhhcc
Confidence 345666663
No 21
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.97 E-value=3.5e-29 Score=257.39 Aligned_cols=233 Identities=21% Similarity=0.256 Sum_probs=179.2
Q ss_pred CCCCcccceeEEEECCEEEEEccCCCCcccCcEEEEEc--CCCeEEEeeeccccCCCCCCCCCCC-CCCccceeEEeCCE
Q 008611 181 QRPKARYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDL--RSWAWSKIQAKAVAESTESPSPALL-TPCAGHSLIPWENK 257 (559)
Q Consensus 181 ~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~--~t~~W~~~~~~~~~~~~~~~~~~~p-~~r~~~~~~~~~~~ 257 (559)
.+|.+|..+++++++++|||+||.. .+++++||+ .+++|..++++ | .+|..|+++.++++
T Consensus 3 ~lp~~~~~~~~~~~~~~vyv~GG~~----~~~~~~~d~~~~~~~W~~l~~~-------------p~~~R~~~~~~~~~~~ 65 (346)
T TIGR03547 3 DLPVGFKNGTGAIIGDKVYVGLGSA----GTSWYKLDLKKPSKGWQKIADF-------------PGGPRNQAVAAAIDGK 65 (346)
T ss_pred CCCccccCceEEEECCEEEEEcccc----CCeeEEEECCCCCCCceECCCC-------------CCCCcccceEEEECCE
Confidence 4889999999999999999999963 267999997 57899998654 4 58999999999999
Q ss_pred EEEEeccCCCC-----CCcceEEEEECCCCeEEEeccCCCCCCCccceEEE-EECCEEEEEcCcCCCC------------
Q 008611 258 LLSIAGHTKDP-----SEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVT-LVGTSLVIFGGEDAKR------------ 319 (559)
Q Consensus 258 lyv~GG~~~~~-----~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~-~~~~~lyv~GG~~~~~------------ 319 (559)
|||+||..... ..++++++||+.+++|+.++. .+|.+|.+++++ +++++||++||.+...
T Consensus 66 iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~--~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~ 143 (346)
T TIGR03547 66 LYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDT--RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAAD 143 (346)
T ss_pred EEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCC--CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcC
Confidence 99999986432 246899999999999999962 457778788776 6899999999986320
Q ss_pred ---------------------CCcCceEEEECCCCceEEecCCCCCCC-cccccEEEEEcCCEEEEEcCCCCCC-CcCce
Q 008611 320 ---------------------SLLNDLHILDLETMTWDEIDAVGVPPS-PRSDHAAAVHAERYLLIFGGGSHAA-CFNDL 376 (559)
Q Consensus 320 ---------------------~~~~~~~~yd~~t~~W~~~~~~~~~p~-~r~~~~~~~~~~~~l~v~GG~~~~~-~~~dv 376 (559)
.+++++++||+.+++|+.+.++ |. +|..|+++++ +++|||+||..... ...++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~---p~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~ 219 (346)
T TIGR03547 144 KDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGEN---PFLGTAGSAIVHK-GNKLLLINGEIKPGLRTAEV 219 (346)
T ss_pred ccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccC---CCCcCCCceEEEE-CCEEEEEeeeeCCCccchhe
Confidence 1247899999999999998654 54 6788877776 66799999965332 23456
Q ss_pred EEEEC--CCCeeEeccCCCCCCCCc-------cccEEEEECCceecceeeeeeccCCCcEEEEEcCcCCC----------
Q 008611 377 HVLDL--QTMEWSRPTQQGEIPTPR-------AGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNGR---------- 437 (559)
Q Consensus 377 ~~~d~--~~~~W~~~~~~~~~p~~R-------~~hs~~~~~~~~~iG~s~~~~~~~~~~~l~v~GG~~~~---------- 437 (559)
+.||+ .+++|..+. .+|.+| .+|+++++++ +|||+||.+..
T Consensus 220 ~~y~~~~~~~~W~~~~---~m~~~r~~~~~~~~~~~a~~~~~-----------------~Iyv~GG~~~~~~~~~~~~~~ 279 (346)
T TIGR03547 220 KQYLFTGGKLEWNKLP---PLPPPKSSSQEGLAGAFAGISNG-----------------VLLVAGGANFPGAQENYKNGK 279 (346)
T ss_pred EEEEecCCCceeeecC---CCCCCCCCccccccEEeeeEECC-----------------EEEEeecCCCCCchhhhhcCC
Confidence 66654 677999985 555554 4565677755 99999997521
Q ss_pred --------CcccEEEEeCCCcceeccc
Q 008611 438 --------YNNEVHVLKPSHKSTLSSK 456 (559)
Q Consensus 438 --------~~~~v~~~d~~~~~~~~~~ 456 (559)
....+.+||+.++.|....
T Consensus 280 ~~~~~~~~~~~~~e~yd~~~~~W~~~~ 306 (346)
T TIGR03547 280 LYAHEGLIKAWSSEVYALDNGKWSKVG 306 (346)
T ss_pred ccccCCCCceeEeeEEEecCCcccccC
Confidence 1246889999999886543
No 22
>PHA02713 hypothetical protein; Provisional
Probab=99.97 E-value=2.4e-29 Score=271.83 Aligned_cols=222 Identities=11% Similarity=0.119 Sum_probs=182.1
Q ss_pred EEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCCCCCcceEEE
Q 008611 197 KMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKV 276 (559)
Q Consensus 197 ~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~ 276 (559)
.|++.||. .......+++||+.+++|..++++ |.+|.+|++++++++|||+||........+++++
T Consensus 259 ~l~~~~g~-~~~~~~~v~~yd~~~~~W~~l~~m-------------p~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~ 324 (557)
T PHA02713 259 CLVCHDTK-YNVCNPCILVYNINTMEYSVISTI-------------PNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYK 324 (557)
T ss_pred EEEEecCc-cccCCCCEEEEeCCCCeEEECCCC-------------CccccceEEEEECCEEEEEcCCCCCCCccceEEE
Confidence 35555552 122335789999999999999654 6888999999999999999998644356789999
Q ss_pred EECCCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccccEEEEE
Q 008611 277 FDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVH 356 (559)
Q Consensus 277 yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~ 356 (559)
||+.+++|..++ ++|.+|..+++++++++||++||.++.. .++++++||+.+++|..+++ +|.+|..++++++
T Consensus 325 Yd~~~n~W~~~~---~m~~~R~~~~~~~~~g~IYviGG~~~~~-~~~sve~Ydp~~~~W~~~~~---mp~~r~~~~~~~~ 397 (557)
T PHA02713 325 INIENKIHVELP---PMIKNRCRFSLAVIDDTIYAIGGQNGTN-VERTIECYTMGDDKWKMLPD---MPIALSSYGMCVL 397 (557)
T ss_pred EECCCCeEeeCC---CCcchhhceeEEEECCEEEEECCcCCCC-CCceEEEEECCCCeEEECCC---CCcccccccEEEE
Confidence 999999999987 6899999999999999999999987554 47889999999999999875 4899999998887
Q ss_pred cCCEEEEEcCCCCC------------------CCcCceEEEECCCCeeEeccCCCCCCCCccccEEEEECCceecceeee
Q 008611 357 AERYLLIFGGGSHA------------------ACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLV 418 (559)
Q Consensus 357 ~~~~l~v~GG~~~~------------------~~~~dv~~~d~~~~~W~~~~~~~~~p~~R~~hs~~~~~~~~~iG~s~~ 418 (559)
+++||++||.+.. ..++.+++|||.+++|..+ ++++.+|.+++++++++
T Consensus 398 -~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v---~~m~~~r~~~~~~~~~~--------- 464 (557)
T PHA02713 398 -DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETL---PNFWTGTIRPGVVSHKD--------- 464 (557)
T ss_pred -CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeec---CCCCcccccCcEEEECC---------
Confidence 5679999996532 1257899999999999988 57889999999999976
Q ss_pred eeccCCCcEEEEEcCcCCC--CcccEEEEeCCC-cceec-ccCCCC
Q 008611 419 VSSYSGEDVIVAFGGYNGR--YNNEVHVLKPSH-KSTLS-SKMIET 460 (559)
Q Consensus 419 ~~~~~~~~~l~v~GG~~~~--~~~~v~~~d~~~-~~~~~-~~~~~~ 460 (559)
.||++||+++. ..+.+++|||.+ +.|.. .+++..
T Consensus 465 --------~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~ 502 (557)
T PHA02713 465 --------DIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESR 502 (557)
T ss_pred --------EEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcc
Confidence 99999998753 235689999998 66654 444433
No 23
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.97 E-value=8e-30 Score=247.03 Aligned_cols=209 Identities=29% Similarity=0.574 Sum_probs=181.9
Q ss_pred eEEecccCCCCCCcccceeEEEEC-CEEEEEccCCCC------cccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCC
Q 008611 172 QWIAPPISGQRPKARYEHGAAVVQ-DKMYIYGGNHNG------RYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLT 244 (559)
Q Consensus 172 ~W~~~~~~g~~p~~r~~~~~~~~~-~~lyv~GG~~~~------~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~ 244 (559)
.|.++.. ...|.||++|.+|++. +.+|+|||.... ....|+|.||+.+++|+++...+ .|.
T Consensus 109 eWkk~~s-pn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g-----------~PS 176 (521)
T KOG1230|consen 109 EWKKVVS-PNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG-----------GPS 176 (521)
T ss_pred ceeEecc-CCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCC-----------CCC
Confidence 9998753 3689999999999986 899999995421 24689999999999999998754 689
Q ss_pred CCccceeEEeCCEEEEEeccCCC---CCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEE-CCEEEEEcCcC----
Q 008611 245 PCAGHSLIPWENKLLSIAGHTKD---PSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGED---- 316 (559)
Q Consensus 245 ~r~~~~~~~~~~~lyv~GG~~~~---~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~---- 316 (559)
+|+||-++++..+|++|||+... ..+.|++|+||+.+.+|+.+.+.|.-|.||++|.+.+. .+.|||+||+.
T Consensus 177 ~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~ 256 (521)
T KOG1230|consen 177 PRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRV 256 (521)
T ss_pred CCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhh
Confidence 99999999999999999998655 35799999999999999999998888999999999888 89999999984
Q ss_pred ----CCCCCcCceEEEECCC-----CceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCC---------CCCCcCceEE
Q 008611 317 ----AKRSLLNDLHILDLET-----MTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGS---------HAACFNDLHV 378 (559)
Q Consensus 317 ----~~~~~~~~~~~yd~~t-----~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~---------~~~~~~dv~~ 378 (559)
..+...+|+|.+++.. -.|..+.+.|..|.||.++++++..+++.|.|||.. .+..+||+|.
T Consensus 257 kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~ 336 (521)
T KOG1230|consen 257 KKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYF 336 (521)
T ss_pred hhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhh
Confidence 2334578999999988 689999999999999999999999998999999943 2457899999
Q ss_pred EECCCCeeEeccCC
Q 008611 379 LDLQTMEWSRPTQQ 392 (559)
Q Consensus 379 ~d~~~~~W~~~~~~ 392 (559)
||++.++|+.....
T Consensus 337 fdlt~nrW~~~qlq 350 (521)
T KOG1230|consen 337 FDLTRNRWSEGQLQ 350 (521)
T ss_pred eecccchhhHhhhc
Confidence 99999999987543
No 24
>PHA03098 kelch-like protein; Provisional
Probab=99.97 E-value=1.2e-28 Score=268.16 Aligned_cols=202 Identities=23% Similarity=0.377 Sum_probs=176.1
Q ss_pred ceeccc----eEEecccCCCCCCcccceeEEEECCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCC
Q 008611 166 SVVVYD----QWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPA 241 (559)
Q Consensus 166 ~~~~~~----~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~ 241 (559)
.+..|| +|..+++ +|.+|.+|++++++++||++||..+...++++++||+.+++|+.+++
T Consensus 312 ~v~~yd~~~~~W~~~~~---~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~------------- 375 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPE---LIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPP------------- 375 (534)
T ss_pred cEEEEeCCCCeeeECCC---CCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCC-------------
Confidence 455564 8998874 88999999999999999999998877788999999999999998754
Q ss_pred CCCCCccceeEEeCCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCC-
Q 008611 242 LLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRS- 320 (559)
Q Consensus 242 ~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~- 320 (559)
+|.+|.+|+++.++++||++||.......++++++||+.+++|+.++ ++|.+|.+|+++.++++|||+||.+....
T Consensus 376 lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~ 452 (534)
T PHA03098 376 LIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGS---PLPISHYGGCAIYHDGKIYVIGGISYIDNI 452 (534)
T ss_pred cCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecC---CCCccccCceEEEECCEEEEECCccCCCCC
Confidence 46899999999999999999998665556889999999999999987 68899999999999999999999864332
Q ss_pred -CcCceEEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEecc
Q 008611 321 -LLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (559)
Q Consensus 321 -~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~~ 390 (559)
.++.+++||+.+++|+.++. .|.+|..++++++ ++.|||+||.......+++++||+.+++|..+.
T Consensus 453 ~~~~~v~~yd~~~~~W~~~~~---~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 519 (534)
T PHA03098 453 KVYNIVESYNPVTNKWTELSS---LNFPRINASLCIF-NNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFC 519 (534)
T ss_pred cccceEEEecCCCCceeeCCC---CCcccccceEEEE-CCEEEEEcCCcCCcccceeEEEeCCCCEEEecC
Confidence 25679999999999999865 4788999998887 667999999877666789999999999999884
No 25
>PTZ00458 acyl CoA binding protein; Provisional
Probab=99.96 E-value=3.6e-30 Score=203.63 Aligned_cols=88 Identities=28% Similarity=0.547 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhcccCCCCcccccccCCCChhhHHHHhhheeeeecCCCCCCCCCCCChhhhhhHHHHhcCCCCCHHHHHH
Q 008611 13 PERFYAAASYAGFDGSPNSSAKELTSKFSNDSALLLYALYQQATVGPCNVPKPSSWSPVEQSKWKSWQGLGNMATTEAMR 92 (559)
Q Consensus 13 ~~~f~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~ly~l~kqa~~g~~~~~~p~~~~~~~~~k~~aw~~~~~~s~~~a~~ 92 (559)
.+.|++|+.+|+..+. ...++++++|+|||||||||+|+|+.++|++||+++|+||+||++++|||++|||+
T Consensus 2 ~~~F~~A~~~v~~~~~--------~~~~s~d~~L~lYalyKQAt~G~c~~~~P~~~d~~~raKw~AW~~l~~ms~~eA~~ 73 (90)
T PTZ00458 2 ADLFEECVSFINSLPK--------TVNLSVEIKLDLYKYYKQSTVGNCNIKEPSMFKYQDRKKYEAWKSIENLNREDAKK 73 (90)
T ss_pred hHHHHHHHHHHHhCCC--------CCCCCHHHHHHHHHHHhhhccCCCCCCCCCcccHHHHHHHHHHHHcCCCCHHHHHH
Confidence 4679999999963221 23689999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCcccc
Q 008611 93 LFVKILEEEDPGWYSR 108 (559)
Q Consensus 93 ~yv~~~~~~~~~~~~~ 108 (559)
+||++|+++.|.|..+
T Consensus 74 ~YI~l~~~l~~~w~~~ 89 (90)
T PTZ00458 74 RYVEIVTELFPNWEKG 89 (90)
T ss_pred HHHHHHHHHhhccccC
Confidence 9999999999999764
No 26
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.96 E-value=7.4e-28 Score=249.63 Aligned_cols=239 Identities=19% Similarity=0.244 Sum_probs=178.8
Q ss_pred eEEecccCCCCCCcccceeEEEECCEEEEEccCCCCcccCcEEEEEcC--CCeEEEeeeccccCCCCCCCCCCCCCCccc
Q 008611 172 QWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLR--SWAWSKIQAKAVAESTESPSPALLTPCAGH 249 (559)
Q Consensus 172 ~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~--t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~ 249 (559)
.+..++ ++|.+|..+++++++++|||+||... +.+++||+. +++|..++++. ..+|.+|
T Consensus 18 ~~~~l~---~lP~~~~~~~~~~~~~~iyv~gG~~~----~~~~~~d~~~~~~~W~~l~~~p------------~~~r~~~ 78 (376)
T PRK14131 18 NAEQLP---DLPVPFKNGTGAIDNNTVYVGLGSAG----TSWYKLDLNAPSKGWTKIAAFP------------GGPREQA 78 (376)
T ss_pred ecccCC---CCCcCccCCeEEEECCEEEEEeCCCC----CeEEEEECCCCCCCeEECCcCC------------CCCcccc
Confidence 456666 48999998899999999999999632 458999986 47899886541 2579999
Q ss_pred eeEEeCCEEEEEeccCCC-----CCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEE-ECCEEEEEcCcCCCC----
Q 008611 250 SLIPWENKLLSIAGHTKD-----PSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTL-VGTSLVIFGGEDAKR---- 319 (559)
Q Consensus 250 ~~~~~~~~lyv~GG~~~~-----~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~-~~~~lyv~GG~~~~~---- 319 (559)
+++.++++|||+||.... ...++++++||+.+++|+.++. ..|.++.+|++++ .+++||+|||.+...
T Consensus 79 ~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~--~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~ 156 (376)
T PRK14131 79 VAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDT--RSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGY 156 (376)
T ss_pred eEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCC--CCCCcccceEEEEeeCCEEEEECCCCHHHHHHH
Confidence 999999999999998651 1346899999999999999973 2467777888777 799999999975320
Q ss_pred -----------------------------CCcCceEEEECCCCceEEecCCCCCCC-cccccEEEEEcCCEEEEEcCCCC
Q 008611 320 -----------------------------SLLNDLHILDLETMTWDEIDAVGVPPS-PRSDHAAAVHAERYLLIFGGGSH 369 (559)
Q Consensus 320 -----------------------------~~~~~~~~yd~~t~~W~~~~~~~~~p~-~r~~~~~~~~~~~~l~v~GG~~~ 369 (559)
.+.+++++||+.+++|+.+.+. |. +|..|+++++ +++|||+||...
T Consensus 157 ~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~---p~~~~~~~a~v~~-~~~iYv~GG~~~ 232 (376)
T PRK14131 157 FEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGES---PFLGTAGSAVVIK-GNKLWLINGEIK 232 (376)
T ss_pred HhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcC---CCCCCCcceEEEE-CCEEEEEeeeEC
Confidence 1247899999999999998644 54 6777777776 667999999543
Q ss_pred C-CCcCceE--EEECCCCeeEeccCCCCCCCCccc--------cEEEEECCceecceeeeeeccCCCcEEEEEcCcCCCC
Q 008611 370 A-ACFNDLH--VLDLQTMEWSRPTQQGEIPTPRAG--------HAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNGRY 438 (559)
Q Consensus 370 ~-~~~~dv~--~~d~~~~~W~~~~~~~~~p~~R~~--------hs~~~~~~~~~iG~s~~~~~~~~~~~l~v~GG~~~~~ 438 (559)
. ....+++ .||+.+++|+.+. .+|.+|.+ +.++++++ +|||+||.+...
T Consensus 233 ~~~~~~~~~~~~~~~~~~~W~~~~---~~p~~~~~~~~~~~~~~~a~~~~~-----------------~iyv~GG~~~~~ 292 (376)
T PRK14131 233 PGLRTDAVKQGKFTGNNLKWQKLP---DLPPAPGGSSQEGVAGAFAGYSNG-----------------VLLVAGGANFPG 292 (376)
T ss_pred CCcCChhheEEEecCCCcceeecC---CCCCCCcCCcCCccceEeceeECC-----------------EEEEeeccCCCC
Confidence 2 2344555 4567889999984 56666542 22445544 899999975211
Q ss_pred ------------------cccEEEEeCCCcceecc
Q 008611 439 ------------------NNEVHVLKPSHKSTLSS 455 (559)
Q Consensus 439 ------------------~~~v~~~d~~~~~~~~~ 455 (559)
...+.+||++++.|...
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~ 327 (376)
T PRK14131 293 ARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKV 327 (376)
T ss_pred ChhhhhcCCcccccCCcceeehheEEecCCccccc
Confidence 12467899999988644
No 27
>cd00435 ACBP Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity. Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a role in regulation of intermediary metabolism and gene regulation. The suggested role of ACBP is to act as a intracellular acyl-CoA transporter and pool former. ACBPs are present in a large group of eukaryotic species and several tissue-specific isoforms have been detected.
Probab=99.96 E-value=1.9e-29 Score=199.52 Aligned_cols=84 Identities=37% Similarity=0.651 Sum_probs=79.8
Q ss_pred hHHHHHHHHHHhcccCCCCcccccccCCCChhhHHHHhhheeeeecCCCCCCCCCCCChhhhhhHHHHhcCCCCCHHHHH
Q 008611 12 YPERFYAAASYAGFDGSPNSSAKELTSKFSNDSALLLYALYQQATVGPCNVPKPSSWSPVEQSKWKSWQGLGNMATTEAM 91 (559)
Q Consensus 12 ~~~~f~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~ly~l~kqa~~g~~~~~~p~~~~~~~~~k~~aw~~~~~~s~~~a~ 91 (559)
|+++|++|+++|+ .+...+++|++|+|||||||||+|||+.++|++||+++++||+||++++|||++|||
T Consensus 1 ~~~~F~~A~~~v~----------~~~~~~~~~~~L~lYalyKQAt~G~~~~~~P~~~d~~~~~K~~AW~~l~~ms~~eA~ 70 (85)
T cd00435 1 LQEEFEAAAEKVK----------KLKTKPSNEEKLQLYSLYKQATVGDCNTERPGMFDLKGRAKWDAWNSLKGMSKEDAM 70 (85)
T ss_pred ChHHHHHHHHHHH----------hCCCCcCHHHHHHHHHHHHHhccCCCCCCCCCcccHhhHHHHHHHHHcCCCCHHHHH
Confidence 4689999999996 345679999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCc
Q 008611 92 RLFVKILEEEDPGW 105 (559)
Q Consensus 92 ~~yv~~~~~~~~~~ 105 (559)
+.||+++++++|.|
T Consensus 71 ~~YV~~~~~l~~~~ 84 (85)
T cd00435 71 KAYIAKVEELIAKY 84 (85)
T ss_pred HHHHHHHHHHhhcc
Confidence 99999999999988
No 28
>PHA02790 Kelch-like protein; Provisional
Probab=99.96 E-value=2.9e-27 Score=252.10 Aligned_cols=188 Identities=19% Similarity=0.314 Sum_probs=163.1
Q ss_pred cceeccc----eEEecccCCCCCCcccceeEEEECCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCC
Q 008611 165 GSVVVYD----QWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSP 240 (559)
Q Consensus 165 ~~~~~~~----~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~ 240 (559)
..++.|| +|..+++ +|.+|..+++++++++||++||.++ .+++++||+.+++|..+++
T Consensus 287 ~~v~~Ydp~~~~W~~~~~---m~~~r~~~~~v~~~~~iYviGG~~~---~~sve~ydp~~n~W~~~~~------------ 348 (480)
T PHA02790 287 NNAIAVNYISNNWIPIPP---MNSPRLYASGVPANNKLYVVGGLPN---PTSVERWFHGDAAWVNMPS------------ 348 (480)
T ss_pred CeEEEEECCCCEEEECCC---CCchhhcceEEEECCEEEEECCcCC---CCceEEEECCCCeEEECCC------------
Confidence 4556664 8999985 8999999999999999999999653 2679999999999998855
Q ss_pred CCCCCCccceeEEeCCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCC
Q 008611 241 ALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRS 320 (559)
Q Consensus 241 ~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~ 320 (559)
+|.+|.+|++++++|+||++||.... .+.+++|||.+++|+.++ ++|.+|.++++++++++||++||.
T Consensus 349 -l~~~r~~~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~---~m~~~r~~~~~~~~~~~IYv~GG~----- 416 (480)
T PHA02790 349 -LLKPRCNPAVASINNVIYVIGGHSET---DTTTEYLLPNHDQWQFGP---STYYPHYKSCALVFGRRLFLVGRN----- 416 (480)
T ss_pred -CCCCCcccEEEEECCEEEEecCcCCC---CccEEEEeCCCCEEEeCC---CCCCccccceEEEECCEEEEECCc-----
Confidence 47899999999999999999998543 367999999999999987 688999999999999999999983
Q ss_pred CcCceEEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEecc
Q 008611 321 LLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (559)
Q Consensus 321 ~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~~ 390 (559)
+.+||+.+++|+.++++ |.+|..++++++ +++|||+||.++....+.+++||+.+++|+...
T Consensus 417 ----~e~ydp~~~~W~~~~~m---~~~r~~~~~~v~-~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~~ 478 (480)
T PHA02790 417 ----AEFYCESSNTWTLIDDP---IYPRDNPELIIV-DNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIWD 478 (480)
T ss_pred ----eEEecCCCCcEeEcCCC---CCCccccEEEEE-CCEEEEECCcCCCcccceEEEEECCCCeEEecC
Confidence 57899999999998754 789999999988 557999999876555688999999999998763
No 29
>PF00887 ACBP: Acyl CoA binding protein; InterPro: IPR000582 Acyl-CoA-binding protein (ACBP) is a small (10 Kd) protein that binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters []. ACBP is also known as diazepam binding inhibitor (DBI) or endozepine (EP) because of its ability to displace diazepam from the benzodiazepine (BZD) recognition site located on the GABA type A receptor. It is therefore possible that this protein also acts as a neuropeptide to modulate the action of the GABA receptor []. ACBP is a highly conserved protein of about 90 residues that is found in all four eukaryotic kingdoms, Animalia, Plantae, Fungi and Protista, and in some eubacterial species []. Although ACBP occurs as a completely independent protein, intact ACB domains have been identified in a number of large, multifunctional proteins in a variety of eukaryotic species. These include large membrane-associated proteins with N-terminal ACB domains, multifunctional enzymes with both ACB and peroxisomal enoyl-CoA Delta(3), Delta(2)-enoyl-CoA isomerase domains, and proteins with both an ACB domain and ankyrin repeats (IPR002110 from INTERPRO) []. The ACB domain consists of four alpha-helices arranged in a bowl shape with a highly exposed acyl-CoA-binding site. The ligand is bound through specific interactions with residues on the protein, most notably several conserved positive charges that interact with the phosphate group on the adenosine-3'phosphate moiety, and the acyl chain is sandwiched between the hydrophobic surfaces of CoA and the protein []. Other proteins containing an ACB domain include: Endozepine-like peptide (ELP) (gene DBIL5) from mouse []. ELP is a testis-specific ACBP homologue that may be involved in the energy metabolism of the mature sperm. MA-DBI, a transmembrane protein of unknown function which has been found in mammals. MA-DBI contains a N-terminal ACB domain. DRS-1 [], a human protein of unknown function that contains a N-terminal ACB domain and a C-terminal enoyl-CoA isomerase/hydratase domain. ; GO: 0000062 fatty-acyl-CoA binding; PDB: 2CB8_A 2FJ9_A 2LBB_A 1ST7_A 3EPY_B 2FDQ_C 1NTI_A 1HB8_A 1ACA_A 1NVL_A ....
Probab=99.94 E-value=4.8e-28 Score=194.79 Aligned_cols=86 Identities=38% Similarity=0.692 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHhcccCCCCcccccccCCCChhhHHHHhhheeeeecCCCCCCCCCCCChhhhhhHHHHhcCCCCCHHHHH
Q 008611 12 YPERFYAAASYAGFDGSPNSSAKELTSKFSNDSALLLYALYQQATVGPCNVPKPSSWSPVEQSKWKSWQGLGNMATTEAM 91 (559)
Q Consensus 12 ~~~~f~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~ly~l~kqa~~g~~~~~~p~~~~~~~~~k~~aw~~~~~~s~~~a~ 91 (559)
|+++|+.|+.+++..+. ...++++++|+|||||||||+|||+.++|+++|+++++||+||++++|||++|||
T Consensus 1 Le~~F~~A~~~v~~~~~--------~~~~~~~~~L~LYalyKQAt~Gd~~~~~P~~~d~~~~~K~~AW~~l~gms~~eA~ 72 (87)
T PF00887_consen 1 LEEEFEAAVEFVSNLPK--------KSQLSNDDKLELYALYKQATHGDCDTPRPGFFDIEGRAKWDAWKALKGMSKEEAM 72 (87)
T ss_dssp HHHHHHHHHHHHHHSSS--------CSTS-HHHHHHHHHHHHHHHTSS--S-CTTTTCHHHHHHHHHHHTTTTTHHHHHH
T ss_pred CHHHHHHHHHHHHhccc--------cCCCCHHHHHHHHHHHHHHHhCCCcCCCCcchhHHHHHHHHHHHHccCCCHHHHH
Confidence 68999999999974322 1489999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCc
Q 008611 92 RLFVKILEEEDPGW 105 (559)
Q Consensus 92 ~~yv~~~~~~~~~~ 105 (559)
++||+++++++|.|
T Consensus 73 ~~Yi~~v~~~~~~~ 86 (87)
T PF00887_consen 73 REYIELVEELIPKY 86 (87)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999887
No 30
>KOG0817 consensus Acyl-CoA-binding protein [Lipid transport and metabolism]
Probab=99.94 E-value=2e-27 Score=203.34 Aligned_cols=95 Identities=39% Similarity=0.638 Sum_probs=88.2
Q ss_pred CChHHHHHHHHHHhcccCCCCcccccccCCCChhhHHHHhhheeeeecCCCCCCCCCCCChhhhhhHHHHhcCCCCCHHH
Q 008611 10 LAYPERFYAAASYAGFDGSPNSSAKELTSKFSNDSALLLYALYQQATVGPCNVPKPSSWSPVEQSKWKSWQGLGNMATTE 89 (559)
Q Consensus 10 ~~~~~~f~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~ly~l~kqa~~g~~~~~~p~~~~~~~~~k~~aw~~~~~~s~~~ 89 (559)
..+.+.|++|++.++ .+...|+++++|+|||||||||+|||++++||+||+++|+||+||+++++||++|
T Consensus 3 ~~~~~~Fe~a~~~~~----------~l~~~p~~ee~L~lYglyKQAt~G~~~~~kPg~~d~~~k~Kw~AW~~l~~~s~~e 72 (142)
T KOG0817|consen 3 ATLEAKFEAAAEAVK----------NLKKKPSNEELLKLYGLYKQATVGDCNTPKPGFFDEEGKAKWQAWNSLGGMSKEE 72 (142)
T ss_pred chHHHHHHHHHHHHH----------hcccCCCHHHHHHHHHHHHhhccCCCCCCCCchhhHHHHHHHHHHHhcCCCCHHH
Confidence 456899999999995 5566799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCccccCcCCcc
Q 008611 90 AMRLFVKILEEEDPGWYSRASNSVA 114 (559)
Q Consensus 90 a~~~yv~~~~~~~~~~~~~~~~~~~ 114 (559)
||+.||+++++++|.|...+...-.
T Consensus 73 A~~~Yv~~~~~l~~~~~~~~~~~~~ 97 (142)
T KOG0817|consen 73 AMEAYVEKVEELIPKYGAEAETEEK 97 (142)
T ss_pred HHHHHHHHHHHHHHHhhcccccccC
Confidence 9999999999999999998887533
No 31
>COG4281 ACB Acyl-CoA-binding protein [Lipid metabolism]
Probab=99.92 E-value=1.1e-25 Score=164.14 Aligned_cols=84 Identities=32% Similarity=0.527 Sum_probs=78.2
Q ss_pred hHHHHHHHHHHhcccCCCCcccccccCCCChhhHHHHhhheeeeecCCCCCCCCCCCChhhhhhHHHHhcCCCCCHHHHH
Q 008611 12 YPERFYAAASYAGFDGSPNSSAKELTSKFSNDSALLLYALYQQATVGPCNVPKPSSWSPVEQSKWKSWQGLGNMATTEAM 91 (559)
Q Consensus 12 ~~~~f~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~ly~l~kqa~~g~~~~~~p~~~~~~~~~k~~aw~~~~~~s~~~a~ 91 (559)
+..+|+.|..-|+ .+..+|++++.|+|||||||+++||.+..+||+||+++|.||+||..|+|.|.++|.
T Consensus 2 ~s~~Feqa~~dV~----------~L~~kP~~d~LLkLYAL~KQ~s~GD~~~ekPG~~d~~gr~K~eAW~~LKGksqedA~ 71 (87)
T COG4281 2 LSTRFEQAQTDVK----------ELSEKPSNDELLKLYALFKQGSVGDNDGEKPGFFDIVGRYKYEAWAGLKGKSQEDAR 71 (87)
T ss_pred hhhHHHHHHHHHH----------HhccCCCcHHHHHHHHHHHhccccccCCCCCCccccccchhHHHHhhccCccHHHHH
Confidence 4578999999995 456779999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCc
Q 008611 92 RLFVKILEEEDPGW 105 (559)
Q Consensus 92 ~~yv~~~~~~~~~~ 105 (559)
++||.+|+++...+
T Consensus 72 qeYialVeeLkak~ 85 (87)
T COG4281 72 QEYIALVEELKAKY 85 (87)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999997654
No 32
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.73 E-value=2.2e-16 Score=152.38 Aligned_cols=238 Identities=21% Similarity=0.345 Sum_probs=175.1
Q ss_pred eEEecccCCCCCCcccceeEEEECCEEEEEccCCC-----CcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCC
Q 008611 172 QWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNHN-----GRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPC 246 (559)
Q Consensus 172 ~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~-----~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r 246 (559)
.|+++.. .+-.+|.+..+++++++||||||... .+..+|+|+||+.+++|+++.+.. |...
T Consensus 71 ~W~~~a~--FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~s------------P~gl 136 (381)
T COG3055 71 GWTKIAD--FPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRS------------PTGL 136 (381)
T ss_pred CceEccc--CCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheecccc------------cccc
Confidence 8999986 56678999999999999999999532 367899999999999999998764 7788
Q ss_pred ccceeEEeCC-EEEEEeccCCC---------------------------------CCCcceEEEEECCCCeEEEeccCCC
Q 008611 247 AGHSLIPWEN-KLLSIAGHTKD---------------------------------PSEIIQVKVFDLQTCSWSTLKTYGK 292 (559)
Q Consensus 247 ~~~~~~~~~~-~lyv~GG~~~~---------------------------------~~~~~~v~~yd~~t~~W~~~~~~g~ 292 (559)
.+++++.+++ .||++||.+.. ......+..|+|.+++|..+-. .
T Consensus 137 ~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~--~ 214 (381)
T COG3055 137 VGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGE--N 214 (381)
T ss_pred ccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCc--C
Confidence 9999999987 99999998642 1125688999999999998852 1
Q ss_pred CCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECC--CCceEEecCCCCCC----CcccccEEEEEcCCEEEEEcC
Q 008611 293 PPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLE--TMTWDEIDAVGVPP----SPRSDHAAAVHAERYLLIFGG 366 (559)
Q Consensus 293 ~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~--t~~W~~~~~~~~~p----~~r~~~~~~~~~~~~l~v~GG 366 (559)
+-.++++.+++.-+|++.++-|.--.+-.+..++.+++. ..+|..+.....++ ....++- .-..++.++|.||
T Consensus 215 pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf-~G~s~~~~lv~GG 293 (381)
T COG3055 215 PFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAF-SGKSNGEVLVAGG 293 (381)
T ss_pred cccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCCCCccccceec-cceeCCeEEEecC
Confidence 235677766655678899999986555456677777775 55899886542111 1111111 1223566888888
Q ss_pred CC---------------C----CCCcCceEEEECCCCeeEeccCCCCCCCCccccEEEEECCceecceeeeeeccCCCcE
Q 008611 367 GS---------------H----AACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDV 427 (559)
Q Consensus 367 ~~---------------~----~~~~~dv~~~d~~~~~W~~~~~~~~~p~~R~~hs~~~~~~~~~iG~s~~~~~~~~~~~ 427 (559)
.. + ....++||.|| .+.|+.+ +.+|.++.+-.++..++ .
T Consensus 294 AnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~---GeLp~~l~YG~s~~~nn-----------------~ 351 (381)
T COG3055 294 ANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIV---GELPQGLAYGVSLSYNN-----------------K 351 (381)
T ss_pred CCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeee---cccCCCccceEEEecCC-----------------c
Confidence 32 1 13456899998 8899998 78899888777776654 8
Q ss_pred EEEEcCcC--CCCcccEEEEeCC
Q 008611 428 IVAFGGYN--GRYNNEVHVLKPS 448 (559)
Q Consensus 428 l~v~GG~~--~~~~~~v~~~d~~ 448 (559)
+|++||.+ |.....|+.+...
T Consensus 352 vl~IGGE~~~Gka~~~v~~l~~~ 374 (381)
T COG3055 352 VLLIGGETSGGKATTRVYSLSWD 374 (381)
T ss_pred EEEEccccCCCeeeeeEEEEEEc
Confidence 99999975 3456666665433
No 33
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.71 E-value=9e-18 Score=166.95 Aligned_cols=274 Identities=17% Similarity=0.235 Sum_probs=191.4
Q ss_pred eeccCcceeccceEEecccCC-------CCCCcccceeEEEECC--EEEEEccCCCCcccCcEEEEEcCCCeEEEeeecc
Q 008611 160 VSEGLGSVVVYDQWIAPPISG-------QRPKARYEHGAAVVQD--KMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKA 230 (559)
Q Consensus 160 ~~~~~~~~~~~~~W~~~~~~g-------~~p~~r~~~~~~~~~~--~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~ 230 (559)
+..-+...+..-.|.+++... ..|..|.||.++...+ -||++||+++-+.+.|+|.|+...+.|....--
T Consensus 228 f~q~i~q~ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~- 306 (723)
T KOG2437|consen 228 FNQYISQQEYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRD- 306 (723)
T ss_pred HhhhhhcccccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecC-
Confidence 333344444445999877654 6789999999998855 899999999999999999999999999988553
Q ss_pred ccCCCCCCCCCCCCCCccceeEEeCC--EEEEEeccCCCC-----CCcceEEEEECCCCeEEEeccCC---CCCCCccce
Q 008611 231 VAESTESPSPALLTPCAGHSLIPWEN--KLLSIAGHTKDP-----SEIIQVKVFDLQTCSWSTLKTYG---KPPVSRGGQ 300 (559)
Q Consensus 231 ~~~~~~~~~~~~p~~r~~~~~~~~~~--~lyv~GG~~~~~-----~~~~~v~~yd~~t~~W~~~~~~g---~~p~~r~~~ 300 (559)
...|..|++|-++.... +||+.|-+-+.+ ....++|+||.+++.|..++... .-|.....|
T Consensus 307 ---------t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDH 377 (723)
T KOG2437|consen 307 ---------TEGPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDH 377 (723)
T ss_pred ---------CCCCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecc
Confidence 35689999999999865 999999886652 24678999999999999996432 257888999
Q ss_pred EEEEECCE--EEEEcCcC--CCCCCcCceEEEECCCCceEEecCC----C---CCCCcccccEEEEEc-CCEEEEEcCCC
Q 008611 301 SVTLVGTS--LVIFGGED--AKRSLLNDLHILDLETMTWDEIDAV----G---VPPSPRSDHAAAVHA-ERYLLIFGGGS 368 (559)
Q Consensus 301 ~~~~~~~~--lyv~GG~~--~~~~~~~~~~~yd~~t~~W~~~~~~----~---~~p~~r~~~~~~~~~-~~~l~v~GG~~ 368 (559)
.+++.+++ ||||||.. .+...+..+|.||.....|..+... + .....|.+|++-... ++.+|+|||..
T Consensus 378 qM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~ 457 (723)
T KOG2437|consen 378 QMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQR 457 (723)
T ss_pred eeeEecCcceEEEecCeeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcc
Confidence 99999876 99999973 2323467899999999999876422 0 123468888887765 56899999977
Q ss_pred CCCCcCceEEEECCCCeeEeccCCCCCCCCccccEEEEECCceecceeeeeeccCCCcEEEEEcCcC-------CCCccc
Q 008611 369 HAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYN-------GRYNNE 441 (559)
Q Consensus 369 ~~~~~~dv~~~d~~~~~W~~~~~~~~~p~~R~~hs~~~~~~~~~iG~s~~~~~~~~~~~l~v~GG~~-------~~~~~~ 441 (559)
....++-.+.||+....=..+.- .. +. .+..+...|| .......+..+.|.+.-|.. +...++
T Consensus 458 s~~El~L~f~y~I~~E~~~~~s~-~~-k~-----dsS~~pS~~f---~qRs~~dp~~~~i~~~~G~~~~~~~~e~~~rns 527 (723)
T KOG2437|consen 458 SKTELNLFFSYDIDSEHVDIISD-GT-KK-----DSSMVPSTGF---TQRATIDPELNEIHVLSGLSKDKEKREENVRNS 527 (723)
T ss_pred cceEEeehhcceeccccchhhhc-cC-cC-----ccccCCCcch---hhhcccCCCCcchhhhcccchhccCccccccCc
Confidence 66667767778776544333310 00 00 0001111111 11111222345677766653 224678
Q ss_pred EEEEeCCCccee
Q 008611 442 VHVLKPSHKSTL 453 (559)
Q Consensus 442 v~~~d~~~~~~~ 453 (559)
+|+|+..++.|.
T Consensus 528 ~wi~~i~~~~w~ 539 (723)
T KOG2437|consen 528 FWIYDIVRNSWS 539 (723)
T ss_pred EEEEEecccchh
Confidence 888888877664
No 34
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.65 E-value=1.7e-14 Score=139.50 Aligned_cols=240 Identities=20% Similarity=0.323 Sum_probs=171.2
Q ss_pred CCCCcccceeEEEECCEEEEEccCCCCcccCcEEEEEcCC--CeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEE
Q 008611 181 QRPKARYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRS--WAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKL 258 (559)
Q Consensus 181 ~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t--~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l 258 (559)
+.|.+--+-+.+.+++.+||-=|..+ ...|.+|+.. ..|++++... ..+|.+..++.++++|
T Consensus 32 dlPvg~KnG~Ga~ig~~~YVGLGs~G----~afy~ldL~~~~k~W~~~a~Fp------------G~~rnqa~~a~~~~kL 95 (381)
T COG3055 32 DLPVGFKNGAGALIGDTVYVGLGSAG----TAFYVLDLKKPGKGWTKIADFP------------GGARNQAVAAVIGGKL 95 (381)
T ss_pred CCCccccccccceecceEEEEeccCC----ccceehhhhcCCCCceEcccCC------------CcccccchheeeCCeE
Confidence 46667666688889999999755222 5678888865 5899998753 5899999999999999
Q ss_pred EEEeccCCCC----CCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEECC-EEEEEcCcCC----------------
Q 008611 259 LSIAGHTKDP----SEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGT-SLVIFGGEDA---------------- 317 (559)
Q Consensus 259 yv~GG~~~~~----~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~lyv~GG~~~---------------- 317 (559)
|||||..... ...+++++||+.+++|..+.+. .|....+++++..++ +||++||.+.
T Consensus 96 yvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~--sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d 173 (381)
T COG3055 96 YVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTR--SPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKD 173 (381)
T ss_pred EEeeccccCCCCCceEeeeeEEecCCCChhheeccc--cccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhccc
Confidence 9999987652 3588999999999999999864 677788888888887 9999999641
Q ss_pred -----------------CCCCcCceEEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCC-CCCCCcCceEEE
Q 008611 318 -----------------KRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGG-SHAACFNDLHVL 379 (559)
Q Consensus 318 -----------------~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~-~~~~~~~dv~~~ 379 (559)
+..+..+++.|++.+++|+.+... +-.++++ +++++.++.+.++-|. ...-....++++
T Consensus 174 ~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~--pf~~~aG-sa~~~~~n~~~lInGEiKpGLRt~~~k~~ 250 (381)
T COG3055 174 KEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGEN--PFYGNAG-SAVVIKGNKLTLINGEIKPGLRTAEVKQA 250 (381)
T ss_pred HHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcC--cccCccC-cceeecCCeEEEEcceecCCccccceeEE
Confidence 222456799999999999988533 3455555 5556567767777663 344455677777
Q ss_pred ECC--CCeeEeccCCCCCCCCc----cccEEEEECCceecceeeeeeccCCCcEEEEEcCcC------------------
Q 008611 380 DLQ--TMEWSRPTQQGEIPTPR----AGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYN------------------ 435 (559)
Q Consensus 380 d~~--~~~W~~~~~~~~~p~~R----~~hs~~~~~~~~~iG~s~~~~~~~~~~~l~v~GG~~------------------ 435 (559)
++. ..+|..+. ++|.+- .+.+...-+. . .+.+++.||-+
T Consensus 251 ~~~~~~~~w~~l~---~lp~~~~~~~eGvAGaf~G~------------s--~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~G 313 (381)
T COG3055 251 DFGGDNLKWLKLS---DLPAPIGSNKEGVAGAFSGK------------S--NGEVLVAGGANFPGALKAYKNGKFYAHEG 313 (381)
T ss_pred EeccCceeeeecc---CCCCCCCCCccccceeccce------------e--CCeEEEecCCCChhHHHHHHhcccccccc
Confidence 775 45899984 333332 2222222211 1 34788888853
Q ss_pred --CCCcccEEEEeCCCcceecccCCC
Q 008611 436 --GRYNNEVHVLKPSHKSTLSSKMIE 459 (559)
Q Consensus 436 --~~~~~~v~~~d~~~~~~~~~~~~~ 459 (559)
..+.++||.+| ...|-....+|.
T Consensus 314 l~K~w~~~Vy~~d-~g~Wk~~GeLp~ 338 (381)
T COG3055 314 LSKSWNSEVYIFD-NGSWKIVGELPQ 338 (381)
T ss_pred hhhhhhceEEEEc-CCceeeecccCC
Confidence 12578999999 555666667776
No 35
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.53 E-value=8.5e-15 Score=145.98 Aligned_cols=209 Identities=18% Similarity=0.269 Sum_probs=155.6
Q ss_pred CCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCC--EEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCC
Q 008611 219 RSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWEN--KLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVS 296 (559)
Q Consensus 219 ~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~--~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~ 296 (559)
-+-.|.+........ +.-...|..|.||-++...+ .||++||.++. ..+.+.|.|+...+.|+.+...+..|..
T Consensus 237 y~~~W~~i~~~~~~~---~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~-~~l~DFW~Y~v~e~~W~~iN~~t~~PG~ 312 (723)
T KOG2437|consen 237 YKPRWSQIIPKSTKG---DGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGT-QDLADFWAYSVKENQWTCINRDTEGPGA 312 (723)
T ss_pred ccccccccCchhhcc---cccccCccccCcceEEEeCCCcEEEEecCcccc-hhHHHHHhhcCCcceeEEeecCCCCCcc
Confidence 456788776543111 11124588999999999855 99999999887 7788999999999999999888789999
Q ss_pred ccceEEEEECC--EEEEEcCcCCCC-----CCcCceEEEECCCCceEEecCCC---CCCCcccccEEEEEcC-CEEEEEc
Q 008611 297 RGGQSVTLVGT--SLVIFGGEDAKR-----SLLNDLHILDLETMTWDEIDAVG---VPPSPRSDHAAAVHAE-RYLLIFG 365 (559)
Q Consensus 297 r~~~~~~~~~~--~lyv~GG~~~~~-----~~~~~~~~yd~~t~~W~~~~~~~---~~p~~r~~~~~~~~~~-~~l~v~G 365 (559)
|.+|.++.... +||+.|-+-+.. ..-.|+|+||.+++.|..++... -.|...+.|.|++..+ +.|||||
T Consensus 313 RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfG 392 (723)
T KOG2437|consen 313 RSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFG 392 (723)
T ss_pred hhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEec
Confidence 99999988655 899999873322 12468999999999999986432 3588899999999865 3599999
Q ss_pred CCC---CCCCcCceEEEECCCCeeEeccCCCC-------CCCCccccEEEEECCceecceeeeeeccCCCcEEEEEcCcC
Q 008611 366 GGS---HAACFNDLHVLDLQTMEWSRPTQQGE-------IPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYN 435 (559)
Q Consensus 366 G~~---~~~~~~dv~~~d~~~~~W~~~~~~~~-------~p~~R~~hs~~~~~~~~~iG~s~~~~~~~~~~~l~v~GG~~ 435 (559)
|.. ....+..+|.||.....|..+...-. .-..|.+|++-...+ ++.+|+|||..
T Consensus 393 Gr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~---------------n~~ly~fggq~ 457 (723)
T KOG2437|consen 393 GRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSK---------------NRCLYVFGGQR 457 (723)
T ss_pred CeeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCC---------------CCeEEeccCcc
Confidence 954 22557889999999999998732110 112377777766554 67999999976
Q ss_pred CC-CcccEEEEe
Q 008611 436 GR-YNNEVHVLK 446 (559)
Q Consensus 436 ~~-~~~~v~~~d 446 (559)
.+ -++-.+.|+
T Consensus 458 s~~El~L~f~y~ 469 (723)
T KOG2437|consen 458 SKTELNLFFSYD 469 (723)
T ss_pred cceEEeehhcce
Confidence 43 233334443
No 36
>KOG3878 consensus Protein involved in maintenance of Golgi structure and ER-Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=4e-12 Score=120.41 Aligned_cols=95 Identities=23% Similarity=0.371 Sum_probs=86.0
Q ss_pred CCCChHHHHHHHHHHhcccCCCCcccccccCCCChhhHHHHhhheeeeecCCCCCC-CC--CCCChhhhhhHHHHhcCCC
Q 008611 8 SGLAYPERFYAAASYAGFDGSPNSSAKELTSKFSNDSALLLYALYQQATVGPCNVP-KP--SSWSPVEQSKWKSWQGLGN 84 (559)
Q Consensus 8 ~~~~~~~~f~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~ly~l~kqa~~g~~~~~-~p--~~~~~~~~~k~~aw~~~~~ 84 (559)
-+++|++.|..|+.|++.+.++ +..++++++|+|-||.||+..||+|+. .| |++|++|+.+-.+|..||.
T Consensus 28 wGf~LeElY~LA~~fyKe~~GK-------a~h~~YEd~lKLial~kQv~~Gp~n~d~~p~~G~lDv~GnDr~~~W~~LG~ 100 (469)
T KOG3878|consen 28 WGFPLEELYRLAFTFYKENSGK-------AIHLSYEDNLKLIALKKQVALGPFNTDRAPALGVLDVIGNDRQQHWQLLGE 100 (469)
T ss_pred hCCCHHHHHHHHHHHHHhccCC-------ccCCChhhhhhhhhhHhhhhcCCCCcccCcccceeecccChHHHHHHHHhc
Confidence 3689999999999999865554 789999999999999999999999965 45 8899999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhCCCccccC
Q 008611 85 MATTEAMRLFVKILEEEDPGWYSRA 109 (559)
Q Consensus 85 ~s~~~a~~~yv~~~~~~~~~~~~~~ 109 (559)
||+++||..||.||+.+|+.|..=.
T Consensus 101 ~sre~AM~~FV~Lldr~C~~F~~yi 125 (469)
T KOG3878|consen 101 ISREQAMEGFVDLLDRMCSAFRPYI 125 (469)
T ss_pred ccHHHHHHHHHHHHHhcchhhhhHH
Confidence 9999999999999999999986543
No 37
>PLN02772 guanylate kinase
Probab=99.10 E-value=5.3e-10 Score=112.86 Aligned_cols=90 Identities=21% Similarity=0.349 Sum_probs=79.9
Q ss_pred CCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCC
Q 008611 293 PPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAAC 372 (559)
Q Consensus 293 ~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~ 372 (559)
.+.++.+++++.+++++|||||.+.....++.+++||..|.+|..+...|..|.||.+|++++++++.|+|+++.+...
T Consensus 21 ~~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~- 99 (398)
T PLN02772 21 GVKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPD- 99 (398)
T ss_pred cCCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCc-
Confidence 4568999999999999999999887655689999999999999999999999999999999999988999999866543
Q ss_pred cCceEEEECCCC
Q 008611 373 FNDLHVLDLQTM 384 (559)
Q Consensus 373 ~~dv~~~d~~~~ 384 (559)
.++|.+.+.|.
T Consensus 100 -~~~w~l~~~t~ 110 (398)
T PLN02772 100 -DSIWFLEVDTP 110 (398)
T ss_pred -cceEEEEcCCH
Confidence 68999988764
No 38
>PF13964 Kelch_6: Kelch motif
Probab=99.10 E-value=1.9e-10 Score=82.37 Aligned_cols=45 Identities=36% Similarity=0.766 Sum_probs=41.7
Q ss_pred cccceeEEEECCEEEEEccCCC-CcccCcEEEEEcCCCeEEEeeec
Q 008611 185 ARYEHGAAVVQDKMYIYGGNHN-GRYLSDMHILDLRSWAWSKIQAK 229 (559)
Q Consensus 185 ~r~~~~~~~~~~~lyv~GG~~~-~~~~~~v~~yd~~t~~W~~~~~~ 229 (559)
||.+|++++++++|||+||..+ ...++++++||+.+++|+.++++
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~m 46 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPM 46 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCC
Confidence 6899999999999999999887 78899999999999999999654
No 39
>PF13964 Kelch_6: Kelch motif
Probab=99.07 E-value=3.4e-10 Score=81.02 Aligned_cols=50 Identities=26% Similarity=0.407 Sum_probs=45.7
Q ss_pred CCccceeEEeCCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCc
Q 008611 245 PCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSR 297 (559)
Q Consensus 245 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r 297 (559)
+|.+|+++.++++||||||.......++++++||+.+++|+.++ ++|.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~---~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLP---PMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECC---CCCCCC
Confidence 68999999999999999999886678999999999999999997 678776
No 40
>PLN02772 guanylate kinase
Probab=98.93 E-value=6.7e-09 Score=104.98 Aligned_cols=89 Identities=18% Similarity=0.307 Sum_probs=77.9
Q ss_pred CCCCccceeEEeCCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEEC-CEEEEEcCcCCCCCC
Q 008611 243 LTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVG-TSLVIFGGEDAKRSL 321 (559)
Q Consensus 243 p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~lyv~GG~~~~~~~ 321 (559)
..++.+|+++.+++++|||||.......++.+++||+.+++|..+...|..|.+|.+|++++++ ++|+||++....
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~--- 98 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP--- 98 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC---
Confidence 5689999999999999999998876557899999999999999999999999999999999994 699999876543
Q ss_pred cCceEEEECCCCc
Q 008611 322 LNDLHILDLETMT 334 (559)
Q Consensus 322 ~~~~~~yd~~t~~ 334 (559)
-.++|.+...|--
T Consensus 99 ~~~~w~l~~~t~~ 111 (398)
T PLN02772 99 DDSIWFLEVDTPF 111 (398)
T ss_pred ccceEEEEcCCHH
Confidence 3678999887643
No 41
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.90 E-value=2.9e-09 Score=75.07 Aligned_cols=45 Identities=24% Similarity=0.521 Sum_probs=41.7
Q ss_pred cccceeEEEECCEEEEEccCCC-CcccCcEEEEEcCCCeEEEeeec
Q 008611 185 ARYEHGAAVVQDKMYIYGGNHN-GRYLSDMHILDLRSWAWSKIQAK 229 (559)
Q Consensus 185 ~r~~~~~~~~~~~lyv~GG~~~-~~~~~~v~~yd~~t~~W~~~~~~ 229 (559)
||.+|++++++++|||+||... ...++++++||+.+++|+.+++|
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPM 46 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCC
Confidence 6899999999999999999887 78899999999999999999876
No 42
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.90 E-value=3.2e-09 Score=75.48 Aligned_cols=48 Identities=48% Similarity=0.823 Sum_probs=41.9
Q ss_pred CCEEEEEcCcC-CCCCCcCceEEEECCCCceEEecCCCCCCCcccccEEEEE
Q 008611 306 GTSLVIFGGED-AKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVH 356 (559)
Q Consensus 306 ~~~lyv~GG~~-~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~ 356 (559)
+++||||||.+ .....++++|+||+.+++|+++ ++.|.+|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~---~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRI---GDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEEC---CCCCCCccceEEEEC
Confidence 57999999998 4555789999999999999998 457999999999874
No 43
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.89 E-value=3.9e-09 Score=75.06 Aligned_cols=47 Identities=40% Similarity=0.809 Sum_probs=42.0
Q ss_pred CCEEEEEcCCC--CCCCcCceEEEECCCCeeEeccCCCCCCCCccccEEEEE
Q 008611 358 ERYLLIFGGGS--HAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTI 407 (559)
Q Consensus 358 ~~~l~v~GG~~--~~~~~~dv~~~d~~~~~W~~~~~~~~~p~~R~~hs~~~~ 407 (559)
+++||||||.. ....++|+|+||+.+.+|+++ +.+|.+|++|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~---~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRI---GDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEEC---CCCCCCccceEEEEC
Confidence 46799999987 677899999999999999998 688999999999864
No 44
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.86 E-value=5.5e-09 Score=74.30 Aligned_cols=45 Identities=29% Similarity=0.714 Sum_probs=41.0
Q ss_pred cccceeEEEECCEEEEEccC---CCCcccCcEEEEEcCCCeEEEeeec
Q 008611 185 ARYEHGAAVVQDKMYIYGGN---HNGRYLSDMHILDLRSWAWSKIQAK 229 (559)
Q Consensus 185 ~r~~~~~~~~~~~lyv~GG~---~~~~~~~~v~~yd~~t~~W~~~~~~ 229 (559)
||.+|++++++++||||||+ ......+++++||+.+++|+.++++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCC
Confidence 68999999999999999998 4567899999999999999999764
No 45
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.82 E-value=7.1e-09 Score=73.05 Aligned_cols=45 Identities=29% Similarity=0.508 Sum_probs=41.5
Q ss_pred CCccceeEEeCCEEEEEeccCCCCCCcceEEEEECCCCeEEEecc
Q 008611 245 PCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKT 289 (559)
Q Consensus 245 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~ 289 (559)
+|.+|+++.++++|||+||.......++++++||+.+++|+.+++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~ 45 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPP 45 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCC
Confidence 689999999999999999999877899999999999999999973
No 46
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.77 E-value=1.8e-08 Score=71.57 Aligned_cols=45 Identities=31% Similarity=0.486 Sum_probs=40.5
Q ss_pred CCccceeEEeCCEEEEEecc--CCCCCCcceEEEEECCCCeEEEecc
Q 008611 245 PCAGHSLIPWENKLLSIAGH--TKDPSEIIQVKVFDLQTCSWSTLKT 289 (559)
Q Consensus 245 ~r~~~~~~~~~~~lyv~GG~--~~~~~~~~~v~~yd~~t~~W~~~~~ 289 (559)
+|.+|++++++++||||||+ .......+++++||+.+++|+.+++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence 68999999999999999999 4445789999999999999999974
No 47
>PF13854 Kelch_5: Kelch motif
Probab=98.72 E-value=2.7e-08 Score=68.07 Aligned_cols=40 Identities=45% Similarity=0.855 Sum_probs=36.1
Q ss_pred CCCcccceeEEEECCEEEEEccCC--CCcccCcEEEEEcCCC
Q 008611 182 RPKARYEHGAAVVQDKMYIYGGNH--NGRYLSDMHILDLRSW 221 (559)
Q Consensus 182 ~p~~r~~~~~~~~~~~lyv~GG~~--~~~~~~~v~~yd~~t~ 221 (559)
+|.+|.+|++++++++||||||.. ....++|+|+||+.++
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 488999999999999999999987 4788999999998764
No 48
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.72 E-value=1.3e-08 Score=72.41 Aligned_cols=43 Identities=33% Similarity=0.692 Sum_probs=29.6
Q ss_pred cccccEEEEEcCCEEEEEcCCCCC-CCcCceEEEECCCCeeEec
Q 008611 347 PRSDHAAAVHAERYLLIFGGGSHA-ACFNDLHVLDLQTMEWSRP 389 (559)
Q Consensus 347 ~r~~~~~~~~~~~~l~v~GG~~~~-~~~~dv~~~d~~~~~W~~~ 389 (559)
||++|+++.+.++.||||||.+.. ..++++|+||+.+++|+++
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~ 44 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRL 44 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEEC
Confidence 699999999977889999997765 6899999999999999999
No 49
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.72 E-value=1.5e-08 Score=72.14 Aligned_cols=44 Identities=27% Similarity=0.576 Sum_probs=31.1
Q ss_pred CCccceeEEe-CCEEEEEeccCCCCCCcceEEEEECCCCeEEEec
Q 008611 245 PCAGHSLIPW-ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLK 288 (559)
Q Consensus 245 ~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 288 (559)
+|.+|+++.+ ++.||||||.+..+..++++++||+.+++|+.++
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~ 45 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLP 45 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECC
Confidence 6899999999 5899999999987778999999999999999994
No 50
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.62 E-value=4e-06 Score=79.37 Aligned_cols=163 Identities=19% Similarity=0.268 Sum_probs=104.7
Q ss_pred EEEEEeccCCCCCCcceEEEEECCCCe--------EEEeccCCCCCCCccceEEEEE--C--CEEEEEcCcCC-------
Q 008611 257 KLLSIAGHTKDPSEIIQVKVFDLQTCS--------WSTLKTYGKPPVSRGGQSVTLV--G--TSLVIFGGEDA------- 317 (559)
Q Consensus 257 ~lyv~GG~~~~~~~~~~v~~yd~~t~~--------W~~~~~~g~~p~~r~~~~~~~~--~--~~lyv~GG~~~------- 317 (559)
..++.||.+.+...++.+++....+.. +.+-...|+.|.+|++|++.++ . ...++|||+.-
T Consensus 40 ~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRT 119 (337)
T PF03089_consen 40 QYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRT 119 (337)
T ss_pred eEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccc
Confidence 456779999988888889988776543 3333445899999999998877 2 26899999631
Q ss_pred ------CCCCcCceEEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCC--CCcCceEEEECCCCeeEec
Q 008611 318 ------KRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHA--ACFNDLHVLDLQTMEWSRP 389 (559)
Q Consensus 318 ------~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~--~~~~dv~~~d~~~~~W~~~ 389 (559)
--.....|+.+|++.+..+.-.. ...-.+...|.+..- ++.+|++||+.-. ..-..++++.+
T Consensus 120 TenWNsVvDC~P~VfLiDleFGC~tah~l-pEl~dG~SFHvslar-~D~VYilGGHsl~sd~Rpp~l~rlkV-------- 189 (337)
T PF03089_consen 120 TENWNSVVDCPPQVFLIDLEFGCCTAHTL-PELQDGQSFHVSLAR-NDCVYILGGHSLESDSRPPRLYRLKV-------- 189 (337)
T ss_pred hhhcceeccCCCeEEEEeccccccccccc-hhhcCCeEEEEEEec-CceEEEEccEEccCCCCCCcEEEEEE--------
Confidence 01123457888998887765432 233456667766654 6779999996422 22334554432
Q ss_pred cCCCCCCCCccccEEEEECCceecceeeeeecc--CCCcEEEEEcCcCCC
Q 008611 390 TQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSY--SGEDVIVAFGGYNGR 437 (559)
Q Consensus 390 ~~~~~~p~~R~~hs~~~~~~~~~iG~s~~~~~~--~~~~~l~v~GG~~~~ 437 (559)
+++.+.-..+|.++++ |+|+..+.+ .+.+..+|+|||..+
T Consensus 190 ----dLllGSP~vsC~vl~~----glSisSAIvt~~~~~e~iIlGGY~sd 231 (337)
T PF03089_consen 190 ----DLLLGSPAVSCTVLQG----GLSISSAIVTQTGPHEYIILGGYQSD 231 (337)
T ss_pred ----eecCCCceeEEEECCC----CceEeeeeEeecCCCceEEEeccccc
Confidence 3334444556777776 444444332 224689999998654
No 51
>PF13854 Kelch_5: Kelch motif
Probab=98.55 E-value=1.7e-07 Score=64.10 Aligned_cols=41 Identities=41% Similarity=0.671 Sum_probs=36.2
Q ss_pred CCCCccceEEEEECCEEEEEcCcCC-CCCCcCceEEEECCCC
Q 008611 293 PPVSRGGQSVTLVGTSLVIFGGEDA-KRSLLNDLHILDLETM 333 (559)
Q Consensus 293 ~p~~r~~~~~~~~~~~lyv~GG~~~-~~~~~~~~~~yd~~t~ 333 (559)
.|.+|.+|+++.++++||||||.+. ....++++|+||+.+.
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 4889999999999999999999984 5667899999998763
No 52
>smart00612 Kelch Kelch domain.
Probab=98.41 E-value=3.2e-07 Score=64.28 Aligned_cols=47 Identities=26% Similarity=0.587 Sum_probs=40.5
Q ss_pred EEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCC
Q 008611 197 KMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWEN 256 (559)
Q Consensus 197 ~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~ 256 (559)
+|||+||..+...++++++||+.+++|+.+++ +|.+|..|+++.+++
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~-------------~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLPS-------------MPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCCeEccCCC-------------CCCccccceEEEeCC
Confidence 48999998776778999999999999998854 478999999988764
No 53
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.38 E-value=2.5e-05 Score=74.76 Aligned_cols=148 Identities=16% Similarity=0.210 Sum_probs=95.3
Q ss_pred CcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCCCCCcceEEEEECCC----CeEEE
Q 008611 211 SDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQT----CSWST 286 (559)
Q Consensus 211 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t----~~W~~ 286 (559)
.....||+.+++++.+.... -.-+++|+ ..-+|.+++.||.... ...+..|++.+ ..|.+
T Consensus 46 a~s~~yD~~tn~~rpl~v~t------------d~FCSgg~-~L~dG~ll~tGG~~~G---~~~ir~~~p~~~~~~~~w~e 109 (243)
T PF07250_consen 46 AHSVEYDPNTNTFRPLTVQT------------DTFCSGGA-FLPDGRLLQTGGDNDG---NKAIRIFTPCTSDGTCDWTE 109 (243)
T ss_pred EEEEEEecCCCcEEeccCCC------------CCcccCcC-CCCCCCEEEeCCCCcc---ccceEEEecCCCCCCCCceE
Confidence 34678999999999886542 24444543 2337899999998653 45677888875 67988
Q ss_pred eccCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEEEECC------CCceEEecCCC-CCCCcccccEEEEEcC
Q 008611 287 LKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLE------TMTWDEIDAVG-VPPSPRSDHAAAVHAE 358 (559)
Q Consensus 287 ~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~------t~~W~~~~~~~-~~p~~r~~~~~~~~~~ 358 (559)
... .|-.+|.+.+++.+ +++++|+||.... .+.|-+. ...|..+.... ..+..-+= -+.+..+
T Consensus 110 ~~~--~m~~~RWYpT~~~L~DG~vlIvGG~~~~------t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP-~~~llPd 180 (243)
T PF07250_consen 110 SPN--DMQSGRWYPTATTLPDGRVLIVGGSNNP------TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYP-FVHLLPD 180 (243)
T ss_pred Ccc--cccCCCccccceECCCCCEEEEeCcCCC------cccccCCccCCCCceeeecchhhhccCccccCc-eEEEcCC
Confidence 763 48889999998887 6799999998622 2223232 11222222111 11222222 2344457
Q ss_pred CEEEEEcCCCCCCCcCceEEEECCCCee-Eecc
Q 008611 359 RYLLIFGGGSHAACFNDLHVLDLQTMEW-SRPT 390 (559)
Q Consensus 359 ~~l~v~GG~~~~~~~~dv~~~d~~~~~W-~~~~ 390 (559)
+.||+|+.. +-.+||..++++ ..++
T Consensus 181 G~lFi~an~-------~s~i~d~~~n~v~~~lP 206 (243)
T PF07250_consen 181 GNLFIFANR-------GSIIYDYKTNTVVRTLP 206 (243)
T ss_pred CCEEEEEcC-------CcEEEeCCCCeEEeeCC
Confidence 789999874 467899999977 5564
No 54
>smart00612 Kelch Kelch domain.
Probab=98.35 E-value=7.4e-07 Score=62.42 Aligned_cols=46 Identities=28% Similarity=0.544 Sum_probs=40.3
Q ss_pred EEEEEcCCCCCCCcCceEEEECCCCeeEeccCCCCCCCCccccEEEEEC
Q 008611 360 YLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIG 408 (559)
Q Consensus 360 ~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~~~~~~~p~~R~~hs~~~~~ 408 (559)
+|||+||......++++++||+.+++|..+ ++++.+|..|++++++
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~---~~~~~~r~~~~~~~~~ 46 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPL---PSMPTPRSGHGVAVIN 46 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCCeEccC---CCCCCccccceEEEeC
Confidence 389999987666788999999999999988 4789999999998875
No 55
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=97.96 E-value=0.00012 Score=69.55 Aligned_cols=124 Identities=24% Similarity=0.346 Sum_probs=83.7
Q ss_pred CCCCccceEEEEEC---C---EEEEEcCcCCCCCCcCceEEEECCCCc--------eEEecCCCCCCCcccccEEEEEcC
Q 008611 293 PPVSRGGQSVTLVG---T---SLVIFGGEDAKRSLLNDLHILDLETMT--------WDEIDAVGVPPSPRSDHAAAVHAE 358 (559)
Q Consensus 293 ~p~~r~~~~~~~~~---~---~lyv~GG~~~~~~~~~~~~~yd~~t~~--------W~~~~~~~~~p~~r~~~~~~~~~~ 358 (559)
+|+-|+-..+...+ + ..+|.||.+.+......+|++...+.. ..+-...|+.|.+|++|++.++..
T Consensus 19 LPPLR~PAv~~~~~~~~~~~~~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~S 98 (337)
T PF03089_consen 19 LPPLRCPAVCHLSDPSDGEPEQYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHS 98 (337)
T ss_pred CCCCCCccEeeecCCCCCCeeeEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEE
Confidence 56666554443312 1 466679998888888899998776432 333345588999999999987742
Q ss_pred ---CEEEEEcCCCC--------------CCCcCceEEEECCCCeeEeccCCCCCCCCccccEEEEECCceecceeeeeec
Q 008611 359 ---RYLLIFGGGSH--------------AACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSS 421 (559)
Q Consensus 359 ---~~l~v~GG~~~--------------~~~~~dv~~~d~~~~~W~~~~~~~~~p~~R~~hs~~~~~~~~~iG~s~~~~~ 421 (559)
...++|||.+- -.+...|+.+|++-+..+.-.. +.+..+.+.|.+..-
T Consensus 99 rGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~l-pEl~dG~SFHvslar-------------- 163 (337)
T PF03089_consen 99 RGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTL-PELQDGQSFHVSLAR-------------- 163 (337)
T ss_pred CCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccc-hhhcCCeEEEEEEec--------------
Confidence 35899999531 1344568888988877765422 455566667766655
Q ss_pred cCCCcEEEEEcCc
Q 008611 422 YSGEDVIVAFGGY 434 (559)
Q Consensus 422 ~~~~~~l~v~GG~ 434 (559)
++.+|++||.
T Consensus 164 ---~D~VYilGGH 173 (337)
T PF03089_consen 164 ---NDCVYILGGH 173 (337)
T ss_pred ---CceEEEEccE
Confidence 4499999996
No 56
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=97.77 E-value=0.0099 Score=57.23 Aligned_cols=161 Identities=15% Similarity=0.159 Sum_probs=90.7
Q ss_pred CcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeC----C-EEEEEeccCCCCCCcceEEEEECCCCeEE
Q 008611 211 SDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWE----N-KLLSIAGHTKDPSEIIQVKVFDLQTCSWS 285 (559)
Q Consensus 211 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~----~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~ 285 (559)
..++++||.|++|..++... .+..-..+. +....++ . +++.+...... .....+++|+..++.|+
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~--------~~~~~~~~~-~~~~G~d~~~~~YKVv~~~~~~~~-~~~~~~~Vys~~~~~Wr 83 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPK--------SRRSNKESD-TYFLGYDPIEKQYKVLCFSDRSGN-RNQSEHQVYTLGSNSWR 83 (230)
T ss_pred CcEEEECCCCCCEEecCCCC--------Ccccccccc-eEEEeecccCCcEEEEEEEeecCC-CCCccEEEEEeCCCCcc
Confidence 57999999999999996431 000001111 1111121 2 55555443211 23457899999999999
Q ss_pred EeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCCceEE-ecCCCCCCCccc----ccEEEEEcCCE
Q 008611 286 TLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDE-IDAVGVPPSPRS----DHAAAVHAERY 360 (559)
Q Consensus 286 ~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~p~~r~----~~~~~~~~~~~ 360 (559)
.+... .+........+.+++.||-+.-..... ....|..||+.+.+|.. ++. |..+. ...++.+ ++.
T Consensus 84 ~~~~~--~~~~~~~~~~v~~~G~lyw~~~~~~~~-~~~~IvsFDl~~E~f~~~i~~----P~~~~~~~~~~~L~~~-~G~ 155 (230)
T TIGR01640 84 TIECS--PPHHPLKSRGVCINGVLYYLAYTLKTN-PDYFIVSFDVSSERFKEFIPL----PCGNSDSVDYLSLINY-KGK 155 (230)
T ss_pred ccccC--CCCccccCCeEEECCEEEEEEEECCCC-CcEEEEEEEcccceEeeeeec----CccccccccceEEEEE-CCE
Confidence 98632 221111222667899888887443211 11269999999999995 542 32221 2234444 456
Q ss_pred EEEEcCCCCCCCcCceEEEE-CCCCeeEecc
Q 008611 361 LLIFGGGSHAACFNDLHVLD-LQTMEWSRPT 390 (559)
Q Consensus 361 l~v~GG~~~~~~~~dv~~~d-~~~~~W~~~~ 390 (559)
|.++....... .-+||+++ -....|+++-
T Consensus 156 L~~v~~~~~~~-~~~IWvl~d~~~~~W~k~~ 185 (230)
T TIGR01640 156 LAVLKQKKDTN-NFDLWVLNDAGKQEWSKLF 185 (230)
T ss_pred EEEEEecCCCC-cEEEEEECCCCCCceeEEE
Confidence 76665432211 24788886 3356799863
No 57
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=97.66 E-value=0.0022 Score=61.58 Aligned_cols=86 Identities=21% Similarity=0.234 Sum_probs=63.7
Q ss_pred EEEEECCCCeEEEeccCCCCCCCccce-EEEEECCEEEEEcCcCCCCCCcCceEEEECCC----CceEEecCCCCCCCcc
Q 008611 274 VKVFDLQTCSWSTLKTYGKPPVSRGGQ-SVTLVGTSLVIFGGEDAKRSLLNDLHILDLET----MTWDEIDAVGVPPSPR 348 (559)
Q Consensus 274 v~~yd~~t~~W~~~~~~g~~p~~r~~~-~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t----~~W~~~~~~~~~p~~r 348 (559)
-..||+.+++++.+... .--.+. .+..-++++++.||.... ...+-.|++.+ ..|.+.... +-.+|
T Consensus 48 s~~yD~~tn~~rpl~v~----td~FCSgg~~L~dG~ll~tGG~~~G---~~~ir~~~p~~~~~~~~w~e~~~~--m~~~R 118 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQ----TDTFCSGGAFLPDGRLLQTGGDNDG---NKAIRIFTPCTSDGTCDWTESPND--MQSGR 118 (243)
T ss_pred EEEEecCCCcEEeccCC----CCCcccCcCCCCCCCEEEeCCCCcc---ccceEEEecCCCCCCCCceECccc--ccCCC
Confidence 45699999999988642 222222 233347899999998653 34577788765 679887643 67899
Q ss_pred cccEEEEEcCCEEEEEcCCC
Q 008611 349 SDHAAAVHAERYLLIFGGGS 368 (559)
Q Consensus 349 ~~~~~~~~~~~~l~v~GG~~ 368 (559)
...+++.+.++.++|+||..
T Consensus 119 WYpT~~~L~DG~vlIvGG~~ 138 (243)
T PF07250_consen 119 WYPTATTLPDGRVLIVGGSN 138 (243)
T ss_pred ccccceECCCCCEEEEeCcC
Confidence 99999999999999999976
No 58
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=97.53 E-value=0.01 Score=57.14 Aligned_cols=154 Identities=14% Similarity=0.182 Sum_probs=92.1
Q ss_pred ccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCCCCCcceEEEEECCCCeEEE-e
Q 008611 209 YLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWST-L 287 (559)
Q Consensus 209 ~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~-~ 287 (559)
....+.+|++.++.|+.+.... +. .. .....+.++|.||-+.-.... .....|..||+.+.+|.. +
T Consensus 68 ~~~~~~Vys~~~~~Wr~~~~~~----------~~-~~-~~~~~v~~~G~lyw~~~~~~~-~~~~~IvsFDl~~E~f~~~i 134 (230)
T TIGR01640 68 NQSEHQVYTLGSNSWRTIECSP----------PH-HP-LKSRGVCINGVLYYLAYTLKT-NPDYFIVSFDVSSERFKEFI 134 (230)
T ss_pred CCccEEEEEeCCCCccccccCC----------CC-cc-ccCCeEEECCEEEEEEEECCC-CCcEEEEEEEcccceEeeee
Confidence 3457899999999999986321 11 11 122267789999988754322 122379999999999995 6
Q ss_pred ccCCCCCCCcc----ceEEEEECCEEEEEcCcCCCCCCcCceEEEE-CCCCceEEecCCCCCCCcccc---cEEEEEcCC
Q 008611 288 KTYGKPPVSRG----GQSVTLVGTSLVIFGGEDAKRSLLNDLHILD-LETMTWDEIDAVGVPPSPRSD---HAAAVHAER 359 (559)
Q Consensus 288 ~~~g~~p~~r~----~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd-~~t~~W~~~~~~~~~p~~r~~---~~~~~~~~~ 359 (559)
+ +|..+. ...++.++++|.++....... .-+||+++ -....|+..-....++.+... ....+..++
T Consensus 135 ~----~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~--~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g 208 (230)
T TIGR01640 135 P----LPCGNSDSVDYLSLINYKGKLAVLKQKKDTN--NFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKG 208 (230)
T ss_pred e----cCccccccccceEEEEECCEEEEEEecCCCC--cEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCC
Confidence 4 343332 345667788888876543211 24688885 445679876444211222221 234445567
Q ss_pred EEEEEcCCCCCCCcCceEEEECCCC
Q 008611 360 YLLIFGGGSHAACFNDLHVLDLQTM 384 (559)
Q Consensus 360 ~l~v~GG~~~~~~~~dv~~~d~~~~ 384 (559)
.|++.-+.. ...-+..||+.++
T Consensus 209 ~I~~~~~~~---~~~~~~~y~~~~~ 230 (230)
T TIGR01640 209 EIVLCCEDE---NPFYIFYYNVGEN 230 (230)
T ss_pred EEEEEeCCC---CceEEEEEeccCC
Confidence 777765531 0113888998764
No 59
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.47 E-value=0.042 Score=54.20 Aligned_cols=124 Identities=15% Similarity=0.208 Sum_probs=75.3
Q ss_pred EEecc-CCCCC-CcceEEEEECCCCeEEEeccCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEEEECCCCceE
Q 008611 260 SIAGH-TKDPS-EIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWD 336 (559)
Q Consensus 260 v~GG~-~~~~~-~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~ 336 (559)
++||. ...+. .+..+..||+.+.+|..+... -.. .-..+... +++||+.|-.+..+.-...+..||..+.+|.
T Consensus 2 ~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~~---i~G-~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~ 77 (281)
T PF12768_consen 2 YVGGSFTSAGSLPCPGLCLYDTDNSQWSSPGNG---ISG-TVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS 77 (281)
T ss_pred EEeeecCCCCCcCCCEEEEEECCCCEeecCCCC---ceE-EEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee
Confidence 34554 33333 588999999999999999631 111 11223333 6688888876544422456899999999999
Q ss_pred EecCC--CCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEeccC
Q 008611 337 EIDAV--GVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQ 391 (559)
Q Consensus 337 ~~~~~--~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~~~ 391 (559)
.+... ...|.|.........+...+++.|....+ ..-+..| +..+|..+..
T Consensus 78 ~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g--~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 78 SLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANG--STFLMKY--DGSSWSSIGS 130 (281)
T ss_pred ecCCcccccCCCcEEEEEeeccCCceEEEeceecCC--CceEEEE--cCCceEeccc
Confidence 88752 23455543333332334457777765221 2335556 5668998853
No 60
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.34 E-value=0.24 Score=48.95 Aligned_cols=122 Identities=17% Similarity=0.209 Sum_probs=76.4
Q ss_pred EEccC-C--CCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe-CCEEEEEeccCCCCCCcceEE
Q 008611 200 IYGGN-H--NGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-ENKLLSIAGHTKDPSEIIQVK 275 (559)
Q Consensus 200 v~GG~-~--~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~ 275 (559)
++||. . +.-....+..||+.+.+|..+.... ..- -..+... ++.||+.|-....+.....+-
T Consensus 2 ~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~~i-------------~G~-V~~l~~~~~~~Llv~G~ft~~~~~~~~la 67 (281)
T PF12768_consen 2 YVGGSFTSAGSLPCPGLCLYDTDNSQWSSPGNGI-------------SGT-VTDLQWASNNQLLVGGNFTLNGTNSSNLA 67 (281)
T ss_pred EEeeecCCCCCcCCCEEEEEECCCCEeecCCCCc-------------eEE-EEEEEEecCCEEEEEEeeEECCCCceeEE
Confidence 45663 2 2224678999999999999874321 111 1223333 667777776655544567789
Q ss_pred EEECCCCeEEEeccC--CCCCCCccceEEEEEC-CEEEEEcCcCCCCCCcCceEEEECCCCceEEecC
Q 008611 276 VFDLQTCSWSTLKTY--GKPPVSRGGQSVTLVG-TSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDA 340 (559)
Q Consensus 276 ~yd~~t~~W~~~~~~--g~~p~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~ 340 (559)
.||..+.+|+.+... ..+|.+....+....+ +.+++.|.. ..+ ..-+..|| ..+|..+..
T Consensus 68 ~yd~~~~~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~-~~g--~~~l~~~d--Gs~W~~i~~ 130 (281)
T PF12768_consen 68 TYDFKNQTWSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRS-ANG--STFLMKYD--GSSWSSIGS 130 (281)
T ss_pred EEecCCCeeeecCCcccccCCCcEEEEEeeccCCceEEEecee-cCC--CceEEEEc--CCceEeccc
Confidence 999999999999752 2456555333333333 368888876 222 24466775 678998865
No 61
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=96.31 E-value=0.99 Score=46.21 Aligned_cols=120 Identities=18% Similarity=0.240 Sum_probs=74.4
Q ss_pred EEECCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCCCCCc
Q 008611 192 AVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEI 271 (559)
Q Consensus 192 ~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~ 271 (559)
++.+++|+.++.. ..+.+||..+..-...+. ++.+...-.++.++++||++..........
T Consensus 73 al~gskIv~~d~~------~~t~vyDt~t~av~~~P~-------------l~~pk~~pisv~VG~~LY~m~~~~~~~~~~ 133 (342)
T PF07893_consen 73 ALHGSKIVAVDQS------GRTLVYDTDTRAVATGPR-------------LHSPKRCPISVSVGDKLYAMDRSPFPEPAG 133 (342)
T ss_pred EecCCeEEEEcCC------CCeEEEECCCCeEeccCC-------------CCCCCcceEEEEeCCeEEEeeccCcccccc
Confidence 3358999999763 448999999987765533 344555557788899999998875431110
Q ss_pred ----ceEEEE--E--------CCCCeEEEeccCCCCCCCccc-------eEEEEE-CCEEEE-EcCcCCCCCCcCceEEE
Q 008611 272 ----IQVKVF--D--------LQTCSWSTLKTYGKPPVSRGG-------QSVTLV-GTSLVI-FGGEDAKRSLLNDLHIL 328 (559)
Q Consensus 272 ----~~v~~y--d--------~~t~~W~~~~~~g~~p~~r~~-------~~~~~~-~~~lyv-~GG~~~~~~~~~~~~~y 328 (559)
...+.+ + .....|..+++ +|..+.. .+-+++ +..|+| .-|.. ...|.|
T Consensus 134 ~~~~~~FE~l~~~~~~~~~~~~~~w~W~~LP~---PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~------~GTysf 204 (342)
T PF07893_consen 134 RPDFPCFEALVYRPPPDDPSPEESWSWRSLPP---PPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR------WGTYSF 204 (342)
T ss_pred CccceeEEEeccccccccccCCCcceEEcCCC---CCccccCCcccceEEEEEEecCCeEEEEecCCc------eEEEEE
Confidence 033333 3 22346888763 3332221 223344 557777 33321 237999
Q ss_pred ECCCCceEEec
Q 008611 329 DLETMTWDEID 339 (559)
Q Consensus 329 d~~t~~W~~~~ 339 (559)
|..+.+|+.+.
T Consensus 205 Dt~~~~W~~~G 215 (342)
T PF07893_consen 205 DTESHEWRKHG 215 (342)
T ss_pred EcCCcceeecc
Confidence 99999999983
No 62
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=96.29 E-value=0.14 Score=52.41 Aligned_cols=127 Identities=18% Similarity=0.265 Sum_probs=76.3
Q ss_pred eCCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCC------cCceEE
Q 008611 254 WENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSL------LNDLHI 327 (559)
Q Consensus 254 ~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~------~~~~~~ 327 (559)
.+++|+..++. ..+.+||+.+..-...+ .++.+.....++.++++||++......... .-++..
T Consensus 75 ~gskIv~~d~~-------~~t~vyDt~t~av~~~P---~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~ 144 (342)
T PF07893_consen 75 HGSKIVAVDQS-------GRTLVYDTDTRAVATGP---RLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALV 144 (342)
T ss_pred cCCeEEEEcCC-------CCeEEEECCCCeEeccC---CCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEec
Confidence 48889888655 34789999999877554 355555666677789999999876433211 112333
Q ss_pred EE--------CCCCceEEecCCCCCCCcccc-------cEEEEEcCCEEEE-EcCCCCCCCcCceEEEECCCCeeEeccC
Q 008611 328 LD--------LETMTWDEIDAVGVPPSPRSD-------HAAAVHAERYLLI-FGGGSHAACFNDLHVLDLQTMEWSRPTQ 391 (559)
Q Consensus 328 yd--------~~t~~W~~~~~~~~~p~~r~~-------~~~~~~~~~~l~v-~GG~~~~~~~~dv~~~d~~~~~W~~~~~ 391 (559)
|+ ...-.|..+++ +|..+.. .+-+++++..|+| .-|.. ...|.||..+.+|+++
T Consensus 145 ~~~~~~~~~~~~~w~W~~LP~---PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-----~GTysfDt~~~~W~~~-- 214 (342)
T PF07893_consen 145 YRPPPDDPSPEESWSWRSLPP---PPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-----WGTYSFDTESHEWRKH-- 214 (342)
T ss_pred cccccccccCCCcceEEcCCC---CCccccCCcccceEEEEEEecCCeEEEEecCCc-----eEEEEEEcCCcceeec--
Confidence 33 12336776643 3333322 1223334667777 43321 2389999999999998
Q ss_pred CCCCCCCccc
Q 008611 392 QGEIPTPRAG 401 (559)
Q Consensus 392 ~~~~p~~R~~ 401 (559)
|+...|-.|
T Consensus 215 -GdW~LPF~G 223 (342)
T PF07893_consen 215 -GDWMLPFHG 223 (342)
T ss_pred -cceecCcCC
Confidence 454444333
No 63
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.20 E-value=1.2 Score=42.46 Aligned_cols=187 Identities=17% Similarity=0.191 Sum_probs=105.5
Q ss_pred EEEECCEEEEEccCCCCcccCcEEEEEcCCCe--EEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCCC
Q 008611 191 AAVVQDKMYIYGGNHNGRYLSDMHILDLRSWA--WSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDP 268 (559)
Q Consensus 191 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~ 268 (559)
.+..++.+|+..+ ...+++||+.+++ |+.-. ..+.....+..++.+|+..+.
T Consensus 32 ~~~~~~~v~~~~~------~~~l~~~d~~tG~~~W~~~~----------------~~~~~~~~~~~~~~v~v~~~~---- 85 (238)
T PF13360_consen 32 AVPDGGRVYVASG------DGNLYALDAKTGKVLWRFDL----------------PGPISGAPVVDGGRVYVGTSD---- 85 (238)
T ss_dssp EEEETTEEEEEET------TSEEEEEETTTSEEEEEEEC----------------SSCGGSGEEEETTEEEEEETT----
T ss_pred EEEeCCEEEEEcC------CCEEEEEECCCCCEEEEeec----------------cccccceeeecccccccccce----
Confidence 3447899999843 3679999998875 65542 112222246678888887622
Q ss_pred CCcceEEEEECCCCe--EEE-eccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCC--ceEEecCCCC
Q 008611 269 SEIIQVKVFDLQTCS--WST-LKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETM--TWDEIDAVGV 343 (559)
Q Consensus 269 ~~~~~v~~yd~~t~~--W~~-~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~~~~~~ 343 (559)
+.++.+|..+++ |+. .......+ .+.....+..++.+|+... ...++.+|+.+. .|......
T Consensus 86 ---~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-------~g~l~~~d~~tG~~~w~~~~~~-- 152 (238)
T PF13360_consen 86 ---GSLYALDAKTGKVLWSIYLTSSPPAG-VRSSSSPAVDGDRLYVGTS-------SGKLVALDPKTGKLLWKYPVGE-- 152 (238)
T ss_dssp ---SEEEEEETTTSCEEEEEEE-SSCTCS-TB--SEEEEETTEEEEEET-------CSEEEEEETTTTEEEEEEESST--
T ss_pred ---eeeEecccCCcceeeeeccccccccc-cccccCceEecCEEEEEec-------cCcEEEEecCCCcEEEEeecCC--
Confidence 279999988775 984 43211111 2233344445677776653 346899998876 46664322
Q ss_pred CCCcc------cccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCe--eEeccCCCCCCCCccccEEEEECCceecce
Q 008611 344 PPSPR------SDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTME--WSRPTQQGEIPTPRAGHAGVTIGENWFLGL 415 (559)
Q Consensus 344 ~p~~r------~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~--W~~~~~~~~~p~~R~~hs~~~~~~~~~iG~ 415 (559)
++..- ...+..++.++.+|+..+.. .+..+|..+.. |... .. . ..+.....
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g------~~~~~d~~tg~~~w~~~-~~-----~--~~~~~~~~------- 211 (238)
T PF13360_consen 153 PRGSSPISSFSDINGSPVISDGRVYVSSGDG------RVVAVDLATGEKLWSKP-IS-----G--IYSLPSVD------- 211 (238)
T ss_dssp T-SS--EEEETTEEEEEECCTTEEEEECCTS------SEEEEETTTTEEEEEEC-SS--------ECECEECC-------
T ss_pred CCCCcceeeecccccceEEECCEEEEEcCCC------eEEEEECCCCCEEEEec-CC-----C--ccCCceee-------
Confidence 11100 01133344456788877643 26677999886 8443 11 1 11111111
Q ss_pred eeeeeccCCCcEEEEEcCcCCCCcccEEEEeCCCcc
Q 008611 416 SLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSHKS 451 (559)
Q Consensus 416 s~~~~~~~~~~~l~v~GG~~~~~~~~v~~~d~~~~~ 451 (559)
++.||+.. . ...++++|+.++.
T Consensus 212 ---------~~~l~~~~-~----~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 212 ---------GGTLYVTS-S----DGRLYALDLKTGK 233 (238)
T ss_dssp ---------CTEEEEEE-T----TTEEEEEETTTTE
T ss_pred ---------CCEEEEEe-C----CCEEEEEECCCCC
Confidence 33676665 2 3578999998873
No 64
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.04 E-value=2.4 Score=44.37 Aligned_cols=177 Identities=14% Similarity=0.106 Sum_probs=93.1
Q ss_pred eEEecccCCCCCCcccceeEEEECCEEEEEccCCCCcccCcEEEEEcCCC--eEEEeeeccccCCCCCCCCCCCCCCccc
Q 008611 172 QWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSW--AWSKIQAKAVAESTESPSPALLTPCAGH 249 (559)
Q Consensus 172 ~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~~~~~~~~~~p~~r~~~ 249 (559)
.|+..-..| .+......+.++.+++||+.+.. ..+++||..++ .|+.--... .. ..+..+..+...
T Consensus 47 ~W~~~~g~g-~~~~~~~~sPvv~~~~vy~~~~~------g~l~ald~~tG~~~W~~~~~~~-~~----~~~~~~~~~~~~ 114 (394)
T PRK11138 47 VWSTSVGDG-VGDYYSRLHPAVAYNKVYAADRA------GLVKALDADTGKEIWSVDLSEK-DG----WFSKNKSALLSG 114 (394)
T ss_pred eeEEEcCCC-CccceeeeccEEECCEEEEECCC------CeEEEEECCCCcEeeEEcCCCc-cc----cccccccccccc
Confidence 688543222 11112223456779999998652 36899999876 487532210 00 000001122333
Q ss_pred eeEEeCCEEEEEeccCCCCCCcceEEEEECCCCe--EEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEE
Q 008611 250 SLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCS--WSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHI 327 (559)
Q Consensus 250 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~ 327 (559)
+.+..++++|+.+ . ...++.||..+++ |+.-.. + . ...+-++.++.+|+..+ .+.++.
T Consensus 115 ~~~v~~~~v~v~~-~------~g~l~ald~~tG~~~W~~~~~-~----~-~~ssP~v~~~~v~v~~~-------~g~l~a 174 (394)
T PRK11138 115 GVTVAGGKVYIGS-E------KGQVYALNAEDGEVAWQTKVA-G----E-ALSRPVVSDGLVLVHTS-------NGMLQA 174 (394)
T ss_pred ccEEECCEEEEEc-C------CCEEEEEECCCCCCcccccCC-C----c-eecCCEEECCEEEEECC-------CCEEEE
Confidence 4556688888743 2 2368999998764 876531 1 1 11222445778887543 235899
Q ss_pred EECCCCc--eEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCC--eeEe
Q 008611 328 LDLETMT--WDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTM--EWSR 388 (559)
Q Consensus 328 yd~~t~~--W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~--~W~~ 388 (559)
||+.+.+ |+.-... .....+...+.++. ++.+|+..+ + ..++.+|+.+. .|..
T Consensus 175 ld~~tG~~~W~~~~~~-~~~~~~~~~sP~v~-~~~v~~~~~-~-----g~v~a~d~~~G~~~W~~ 231 (394)
T PRK11138 175 LNESDGAVKWTVNLDV-PSLTLRGESAPATA-FGGAIVGGD-N-----GRVSAVLMEQGQLIWQQ 231 (394)
T ss_pred EEccCCCEeeeecCCC-CcccccCCCCCEEE-CCEEEEEcC-C-----CEEEEEEccCChhhhee
Confidence 9998764 7764321 00111222233333 554555333 1 35788888776 4764
No 65
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.03 E-value=1.9 Score=45.01 Aligned_cols=157 Identities=17% Similarity=0.207 Sum_probs=85.2
Q ss_pred ceeEEEECCEEEEEccCCCCcccCcEEEEEcCCC--eEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccC
Q 008611 188 EHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSW--AWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHT 265 (559)
Q Consensus 188 ~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~ 265 (559)
..+.++.+++||+.+. ...++++|..++ .|+.-... ....+-+..++.+|+..+
T Consensus 113 ~~~~~v~~~~v~v~~~------~g~l~ald~~tG~~~W~~~~~~----------------~~~ssP~v~~~~v~v~~~-- 168 (394)
T PRK11138 113 SGGVTVAGGKVYIGSE------KGQVYALNAEDGEVAWQTKVAG----------------EALSRPVVSDGLVLVHTS-- 168 (394)
T ss_pred ccccEEECCEEEEEcC------CCEEEEEECCCCCCcccccCCC----------------ceecCCEEECCEEEEECC--
Confidence 3445667888887543 246999999876 58754211 011223455788887432
Q ss_pred CCCCCcceEEEEECCCCe--EEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCC--ceEEecCC
Q 008611 266 KDPSEIIQVKVFDLQTCS--WSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETM--TWDEIDAV 341 (559)
Q Consensus 266 ~~~~~~~~v~~yd~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~~~~ 341 (559)
...++.||+.+++ |+.-... +....+...+-++.++.+|+..+ ...++.+|+.+. .|+.....
T Consensus 169 -----~g~l~ald~~tG~~~W~~~~~~-~~~~~~~~~sP~v~~~~v~~~~~-------~g~v~a~d~~~G~~~W~~~~~~ 235 (394)
T PRK11138 169 -----NGMLQALNESDGAVKWTVNLDV-PSLTLRGESAPATAFGGAIVGGD-------NGRVSAVLMEQGQLIWQQRISQ 235 (394)
T ss_pred -----CCEEEEEEccCCCEeeeecCCC-CcccccCCCCCEEECCEEEEEcC-------CCEEEEEEccCChhhheecccc
Confidence 2369999998876 8775321 11111222233445666666432 235788888765 47643211
Q ss_pred --CCCCCcc---cccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCC--eeEe
Q 008611 342 --GVPPSPR---SDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTM--EWSR 388 (559)
Q Consensus 342 --~~~p~~r---~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~--~W~~ 388 (559)
+.....| ...+.++ .++.+|+.+.. ..++++|+.+. .|+.
T Consensus 236 ~~~~~~~~~~~~~~~sP~v-~~~~vy~~~~~------g~l~ald~~tG~~~W~~ 282 (394)
T PRK11138 236 PTGATEIDRLVDVDTTPVV-VGGVVYALAYN------GNLVALDLRSGQIVWKR 282 (394)
T ss_pred CCCccchhcccccCCCcEE-ECCEEEEEEcC------CeEEEEECCCCCEEEee
Confidence 0000001 1122333 36667776531 35889998876 4875
No 66
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=95.65 E-value=3.1 Score=43.61 Aligned_cols=147 Identities=12% Similarity=0.036 Sum_probs=79.6
Q ss_pred CcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCC-EEEEEeccCCCCCCcceEEEEECCCCeEEEecc
Q 008611 211 SDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWEN-KLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKT 289 (559)
Q Consensus 211 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~ 289 (559)
..++++|+.++....+.... ..... ....-++ .|++..... ....++.+|+.+.....+..
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~-------------~~~~~-~~~spDg~~l~~~~~~~----~~~~i~~~d~~~~~~~~l~~ 275 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFP-------------GMNGA-PAFSPDGSKLAVSLSKD----GNPDIYVMDLDGKQLTRLTN 275 (417)
T ss_pred cEEEEEECCCCCEEEeecCC-------------CCccc-eEECCCCCEEEEEECCC----CCccEEEEECCCCCEEECCC
Confidence 57999999988766553321 11111 1122244 455543322 23579999999988777753
Q ss_pred CCCCCCCccceEEEEECC-EEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCC
Q 008611 290 YGKPPVSRGGQSVTLVGT-SLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGS 368 (559)
Q Consensus 290 ~g~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~ 368 (559)
.. ...... ...-++ +|++.....+ ...+|.+|+.+..+..+...+ ..........++..+++....
T Consensus 276 ~~---~~~~~~-~~s~dg~~l~~~s~~~g----~~~iy~~d~~~~~~~~l~~~~-----~~~~~~~~spdg~~i~~~~~~ 342 (417)
T TIGR02800 276 GP---GIDTEP-SWSPDGKSIAFTSDRGG----SPQIYMMDADGGEVRRLTFRG-----GYNASPSWSPDGDLIAFVHRE 342 (417)
T ss_pred CC---CCCCCE-EECCCCCEEEEEECCCC----CceEEEEECCCCCEEEeecCC-----CCccCeEECCCCCEEEEEEcc
Confidence 21 111111 111244 4544432222 247999999998888775331 222333444444455554432
Q ss_pred CCCCcCceEEEECCCCeeEecc
Q 008611 369 HAACFNDLHVLDLQTMEWSRPT 390 (559)
Q Consensus 369 ~~~~~~dv~~~d~~~~~W~~~~ 390 (559)
. ....++.+|+.+..+..+.
T Consensus 343 ~--~~~~i~~~d~~~~~~~~l~ 362 (417)
T TIGR02800 343 G--GGFNIAVMDLDGGGERVLT 362 (417)
T ss_pred C--CceEEEEEeCCCCCeEEcc
Confidence 2 1346999999887776664
No 67
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=95.16 E-value=2.6 Score=40.77 Aligned_cols=164 Identities=11% Similarity=0.065 Sum_probs=89.7
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCCCCCc--c
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEI--I 272 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~--~ 272 (559)
++.+|+..+ ..+.++|+.+++++.+..... ...+..+..-.++.-+|.||+---........ .
T Consensus 51 ~g~l~v~~~-------~~~~~~d~~~g~~~~~~~~~~--------~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g 115 (246)
T PF08450_consen 51 DGRLYVADS-------GGIAVVDPDTGKVTVLADLPD--------GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPG 115 (246)
T ss_dssp TSEEEEEET-------TCEEEEETTTTEEEEEEEEET--------TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSE
T ss_pred CCEEEEEEc-------CceEEEecCCCcEEEEeeccC--------CCcccCCCceEEEcCCCCEEEEecCCCcccccccc
Confidence 678888865 345777999999998876520 01123333444444477877764332221222 6
Q ss_pred eEEEEECCCCeEEEeccCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCcCceEEEECCCC--ceEEecCCCCCCCc-
Q 008611 273 QVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETM--TWDEIDAVGVPPSP- 347 (559)
Q Consensus 273 ~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~~~~~~~p~~- 347 (559)
.++++++. .+...+... +.. -.+++.. ++.||+.-- ..+.|++|++... .+.........+..
T Consensus 116 ~v~~~~~~-~~~~~~~~~--~~~---pNGi~~s~dg~~lyv~ds------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (246)
T PF08450_consen 116 SVYRIDPD-GKVTVVADG--LGF---PNGIAFSPDGKTLYVADS------FNGRIWRFDLDADGGELSNRRVFIDFPGGP 183 (246)
T ss_dssp EEEEEETT-SEEEEEEEE--ESS---EEEEEEETTSSEEEEEET------TTTEEEEEEEETTTCCEEEEEEEEE-SSSS
T ss_pred ceEEECCC-CeEEEEecC--ccc---ccceEECCcchheeeccc------ccceeEEEeccccccceeeeeeEEEcCCCC
Confidence 79999999 766665421 111 1234443 336777432 2456999998643 34332211111121
Q ss_pred ccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEecc
Q 008611 348 RSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (559)
Q Consensus 348 r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~~ 390 (559)
..--.+++-.++.|||..-. .+.|++||+....-..+.
T Consensus 184 g~pDG~~vD~~G~l~va~~~-----~~~I~~~~p~G~~~~~i~ 221 (246)
T PF08450_consen 184 GYPDGLAVDSDGNLWVADWG-----GGRIVVFDPDGKLLREIE 221 (246)
T ss_dssp CEEEEEEEBTTS-EEEEEET-----TTEEEEEETTSCEEEEEE
T ss_pred cCCCcceEcCCCCEEEEEcC-----CCEEEEECCCccEEEEEc
Confidence 12335566567779887321 246999999976666663
No 68
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=95.11 E-value=4.8 Score=41.64 Aligned_cols=149 Identities=17% Similarity=0.179 Sum_probs=82.0
Q ss_pred eeEEEECCEEEEEccCCCCcccCcEEEEEcCCCe--EEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCC
Q 008611 189 HGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWA--WSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTK 266 (559)
Q Consensus 189 ~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~ 266 (559)
.+.++.++.||+.+.. ..+++||+.+++ |+.--.. +...+.+..++.+|+. +.+
T Consensus 59 ~~p~v~~~~v~v~~~~------g~v~a~d~~tG~~~W~~~~~~----------------~~~~~p~v~~~~v~v~-~~~- 114 (377)
T TIGR03300 59 LQPAVAGGKVYAADAD------GTVVALDAETGKRLWRVDLDE----------------RLSGGVGADGGLVFVG-TEK- 114 (377)
T ss_pred cceEEECCEEEEECCC------CeEEEEEccCCcEeeeecCCC----------------CcccceEEcCCEEEEE-cCC-
Confidence 3446678888887641 369999988764 8643211 1112233446677754 322
Q ss_pred CCCCcceEEEEECCCCe--EEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCC--ceEEecCCC
Q 008611 267 DPSEIIQVKVFDLQTCS--WSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETM--TWDEIDAVG 342 (559)
Q Consensus 267 ~~~~~~~v~~yd~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~~~~~ 342 (559)
..++.||+.+++ |+.-.. .. ...+.+..++.+|+..+ ...++.+|+.+. .|+.....
T Consensus 115 -----g~l~ald~~tG~~~W~~~~~-----~~-~~~~p~v~~~~v~v~~~-------~g~l~a~d~~tG~~~W~~~~~~- 175 (377)
T TIGR03300 115 -----GEVIALDAEDGKELWRAKLS-----SE-VLSPPLVANGLVVVRTN-------DGRLTALDAATGERLWTYSRVT- 175 (377)
T ss_pred -----CEEEEEECCCCcEeeeeccC-----ce-eecCCEEECCEEEEECC-------CCeEEEEEcCCCceeeEEccCC-
Confidence 368999987764 875431 11 11223345677777543 235899998765 47654321
Q ss_pred CCCC-cccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCC--eeEe
Q 008611 343 VPPS-PRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTM--EWSR 388 (559)
Q Consensus 343 ~~p~-~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~--~W~~ 388 (559)
.+. .+...+.++. ++ .+++|... ..++.+|+.+. .|..
T Consensus 176 -~~~~~~~~~sp~~~-~~-~v~~~~~~-----g~v~ald~~tG~~~W~~ 216 (377)
T TIGR03300 176 -PALTLRGSASPVIA-DG-GVLVGFAG-----GKLVALDLQTGQPLWEQ 216 (377)
T ss_pred -CceeecCCCCCEEE-CC-EEEEECCC-----CEEEEEEccCCCEeeee
Confidence 111 1222333443 55 44455432 35889998765 4764
No 69
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=94.94 E-value=0.044 Score=51.58 Aligned_cols=70 Identities=21% Similarity=0.192 Sum_probs=53.3
Q ss_pred ccCCCChhhHHHHhhheeeeecCCCCCCC-------------C-CCCCh-------hhhhhHHHHhcCCCCCHHHHHHHH
Q 008611 36 LTSKFSNDSALLLYALYQQATVGPCNVPK-------------P-SSWSP-------VEQSKWKSWQGLGNMATTEAMRLF 94 (559)
Q Consensus 36 ~~~~~~~~~~l~ly~l~kqa~~g~~~~~~-------------p-~~~~~-------~~~~k~~aw~~~~~~s~~~a~~~y 94 (559)
+..+.+.++.+.|-||.-|+..|+++.+. | ++.+- ....--++|+++.|||+.+||.+|
T Consensus 113 g~~~~~~~~~~~Laal~~q~~~gd~~~~~~~~~~~~~~~~~lP~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~a~~~y 192 (207)
T smart00295 113 GRLPCPEEEALLLAALALQAEFGDYDEELHVLLKELSLKRFLPKQLLDSEKRTLKEWRERIVSLHKELIGLSPEEAKLKY 192 (207)
T ss_pred CccCCCHHHHHHHHHHHHHHHhcCCChHhcCCccccccceeCChhhhhhccccHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 34567899999999999999999997532 1 11111 112224779999999999999999
Q ss_pred HHHHHHhCCCcc
Q 008611 95 VKILEEEDPGWY 106 (559)
Q Consensus 95 v~~~~~~~~~~~ 106 (559)
|+++.++ |.|.
T Consensus 193 l~~~~~l-p~fG 203 (207)
T smart00295 193 LELAEKL-PTYG 203 (207)
T ss_pred HHHhccc-cccC
Confidence 9999987 7764
No 70
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=94.89 E-value=1.1 Score=46.00 Aligned_cols=153 Identities=14% Similarity=0.145 Sum_probs=82.7
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCE-EEEEeccCCCCCCcce
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENK-LLSIAGHTKDPSEIIQ 273 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~-lyv~GG~~~~~~~~~~ 273 (559)
..-|.+++|.++. -.+|..|-.++. .+..+... . .|....... -+|. ..+++|+.. -
T Consensus 224 ~~plllvaG~d~~---lrifqvDGk~N~--~lqS~~l~--------~--fPi~~a~f~-p~G~~~i~~s~rrk------y 281 (514)
T KOG2055|consen 224 TAPLLLVAGLDGT---LRIFQVDGKVNP--KLQSIHLE--------K--FPIQKAEFA-PNGHSVIFTSGRRK------Y 281 (514)
T ss_pred CCceEEEecCCCc---EEEEEecCccCh--hheeeeec--------c--Cccceeeec-CCCceEEEecccce------E
Confidence 3468888886542 234555555554 33332200 0 111111111 2454 777777643 4
Q ss_pred EEEEECCCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccccEE
Q 008611 274 VKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAA 353 (559)
Q Consensus 274 v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~ 353 (559)
++.||+.+.+-+.+.+...++......-.+.-.+.++++-|.+ .-|+.+...|+.|..--. ..++..-..
T Consensus 282 ~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~------G~I~lLhakT~eli~s~K----ieG~v~~~~ 351 (514)
T KOG2055|consen 282 LYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN------GHIHLLHAKTKELITSFK----IEGVVSDFT 351 (514)
T ss_pred EEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccC------ceEEeehhhhhhhhheee----eccEEeeEE
Confidence 8999999999999875443442222222233344566666653 347788888888843211 122222112
Q ss_pred EEEcCCEEEEEcCCCCCCCcCceEEEECCCCe
Q 008611 354 AVHAERYLLIFGGGSHAACFNDLHVLDLQTME 385 (559)
Q Consensus 354 ~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~ 385 (559)
..-.+..||+.||+ ..||+||+.++.
T Consensus 352 fsSdsk~l~~~~~~------GeV~v~nl~~~~ 377 (514)
T KOG2055|consen 352 FSSDSKELLASGGT------GEVYVWNLRQNS 377 (514)
T ss_pred EecCCcEEEEEcCC------ceEEEEecCCcc
Confidence 22234568888885 479999998873
No 71
>PF00373 FERM_M: FERM central domain; InterPro: IPR019748 The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 4DXA_B 2EMS_A 2ZPY_A 1J19_A 2D10_B 2D11_B 1GC6_A 2D2Q_A 2EMT_A 2YVC_A ....
Probab=94.80 E-value=0.05 Score=46.70 Aligned_cols=81 Identities=25% Similarity=0.304 Sum_probs=55.2
Q ss_pred HHHHHHHHhcccCCCCcccccccCCCChhhHHHHhhheeeeecCCCCCCC---CCCCCh--------------------h
Q 008611 15 RFYAAASYAGFDGSPNSSAKELTSKFSNDSALLLYALYQQATVGPCNVPK---PSSWSP--------------------V 71 (559)
Q Consensus 15 ~f~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~ly~l~kqa~~g~~~~~~---p~~~~~--------------------~ 71 (559)
-|..+..-+- .+.-+.+.++.++|-||.-|+..|+++... .+.++. .
T Consensus 14 ly~Q~~~~vl----------~g~~~~~~e~a~~LAAl~~q~~~gd~~~~~~~~~~~~~~~~~~~~~~~~iP~~~~~~~~~ 83 (126)
T PF00373_consen 14 LYLQARRDVL----------QGRLPCSEEDAIKLAALQLQAEYGDYNSEQEHSSGYIDPEIKEFQLENFIPKAPKLIKKM 83 (126)
T ss_dssp HHHHHHHHHH----------TTSSTS-HHHHHHHHHHHHHHHHTSSTTTTTSSTTTTTGSHHCTCGHGTSSHHHHHHCCS
T ss_pred HHHHHHHHHH----------cCcCCCCHHHHHHHHHHHHHHHhcCCCcccccCcccccccccchhhhhhhhhhHHHHhhh
Confidence 3555666552 345589999999999999999999998331 111111 1
Q ss_pred hhhhH-----HHHhcCCCCCHHHHHHHHHHHHHHhCCCcc
Q 008611 72 EQSKW-----KSWQGLGNMATTEAMRLFVKILEEEDPGWY 106 (559)
Q Consensus 72 ~~~k~-----~aw~~~~~~s~~~a~~~yv~~~~~~~~~~~ 106 (559)
....| ..|+++.+||..+||..||+++.++ |.|.
T Consensus 84 ~~~~~~~~I~~~~~~l~~~s~~~a~~~fl~~~~~~-p~yG 122 (126)
T PF00373_consen 84 KQKEWEKRILEQHKKLRGMSPEEAKLQFLQICQSL-PTYG 122 (126)
T ss_dssp THHHHHHHHHHHHHHTTT--HHHHHHHHHHHHCTS-TTTT
T ss_pred hHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhcC-CCCC
Confidence 22223 6689999999999999999999874 6653
No 72
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=94.55 E-value=3.4 Score=38.50 Aligned_cols=156 Identities=16% Similarity=0.195 Sum_probs=78.6
Q ss_pred eEEEECCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeC-CEEEEEeccCCCC
Q 008611 190 GAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWE-NKLLSIAGHTKDP 268 (559)
Q Consensus 190 ~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~-~~lyv~GG~~~~~ 268 (559)
+++...+++|+|-| +.+|+++.............. -+..| .....+....+ +++|+|-|.
T Consensus 11 A~~~~~g~~y~FkG-------~~~w~~~~~~~~~~p~~I~~~-------w~~~p-~~IDAa~~~~~~~~~yfFkg~---- 71 (194)
T cd00094 11 AVTTLRGELYFFKG-------RYFWRLSPGKPPGSPFLISSF-------WPSLP-SPVDAAFERPDTGKIYFFKGD---- 71 (194)
T ss_pred eEEEeCCEEEEEeC-------CEEEEEeCCCCCCCCeEhhhh-------CCCCC-CCccEEEEECCCCEEEEECCC----
Confidence 34445699999988 568888765221111110000 01112 12222222223 899999664
Q ss_pred CCcceEEEEECCCCeEE---EeccCCCCCC-CccceEEEEE-CCEEEEEcCcCCCCCCcCceEEEECCCCceEEe-----
Q 008611 269 SEIIQVKVFDLQTCSWS---TLKTYGKPPV-SRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEI----- 338 (559)
Q Consensus 269 ~~~~~v~~yd~~t~~W~---~~~~~g~~p~-~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~----- 338 (559)
..|+|+..+..+. .+...+-.+. .....+...- ++++|+|-| +..|+||..+++...-
T Consensus 72 ----~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg--------~~y~ry~~~~~~v~~~yP~~i 139 (194)
T cd00094 72 ----KYWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG--------DKYWRYDEKTQKMDPGYPKLI 139 (194)
T ss_pred ----EEEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC--------CEEEEEeCCCccccCCCCcch
Confidence 5788876642221 1111111111 2222222222 579999987 3478888765544211
Q ss_pred cC-CCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCe
Q 008611 339 DA-VGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTME 385 (559)
Q Consensus 339 ~~-~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~ 385 (559)
.. -..+|. .-.++....++.+|+|-|. ..|+||..+.+
T Consensus 140 ~~~w~g~p~--~idaa~~~~~~~~yfF~g~-------~y~~~d~~~~~ 178 (194)
T cd00094 140 ETDFPGVPD--KVDAAFRWLDGYYYFFKGD-------QYWRFDPRSKE 178 (194)
T ss_pred hhcCCCcCC--CcceeEEeCCCcEEEEECC-------EEEEEeCccce
Confidence 00 011222 2233444444679999884 48999988766
No 73
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=94.32 E-value=5.7 Score=38.86 Aligned_cols=143 Identities=20% Similarity=0.240 Sum_probs=72.8
Q ss_pred EEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEE-eCC-EEEEEeccCCCCCCcceE
Q 008611 197 KMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIP-WEN-KLLSIAGHTKDPSEIIQV 274 (559)
Q Consensus 197 ~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~~~-~lyv~GG~~~~~~~~~~v 274 (559)
++|+.++.+ +.+.+||+.+++-...-... ..+ ++++. -++ .+|+.++. .+.+
T Consensus 2 ~~~~s~~~d-----~~v~~~d~~t~~~~~~~~~~------------~~~---~~l~~~~dg~~l~~~~~~------~~~v 55 (300)
T TIGR03866 2 KAYVSNEKD-----NTISVIDTATLEVTRTFPVG------------QRP---RGITLSKDGKLLYVCASD------SDTI 55 (300)
T ss_pred cEEEEecCC-----CEEEEEECCCCceEEEEECC------------CCC---CceEECCCCCEEEEEECC------CCeE
Confidence 567777633 37888999887643322111 011 12222 233 56777653 2468
Q ss_pred EEEECCCCeEEEeccCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccccE
Q 008611 275 KVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHA 352 (559)
Q Consensus 275 ~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~ 352 (559)
..||+.+.+....-..+ +.+ ..++.. ++.+|+.++.+ +.+..||+.+..-...- +.....++
T Consensus 56 ~~~d~~~~~~~~~~~~~--~~~---~~~~~~~~g~~l~~~~~~~------~~l~~~d~~~~~~~~~~-----~~~~~~~~ 119 (300)
T TIGR03866 56 QVIDLATGEVIGTLPSG--PDP---ELFALHPNGKILYIANEDD------NLVTVIDIETRKVLAEI-----PVGVEPEG 119 (300)
T ss_pred EEEECCCCcEEEeccCC--CCc---cEEEECCCCCEEEEEcCCC------CeEEEEECCCCeEEeEe-----eCCCCcce
Confidence 89999988765432111 111 122222 34566665432 35889999875422111 11111234
Q ss_pred EEEEcCCEEEEEcCCCCCCCcCceEEEECCCCe
Q 008611 353 AAVHAERYLLIFGGGSHAACFNDLHVLDLQTME 385 (559)
Q Consensus 353 ~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~ 385 (559)
+++..++.+++++.... +.++.||..+..
T Consensus 120 ~~~~~dg~~l~~~~~~~----~~~~~~d~~~~~ 148 (300)
T TIGR03866 120 MAVSPDGKIVVNTSETT----NMAHFIDTKTYE 148 (300)
T ss_pred EEECCCCCEEEEEecCC----CeEEEEeCCCCe
Confidence 55555665666665321 235667876654
No 74
>PTZ00421 coronin; Provisional
Probab=94.17 E-value=9.9 Score=41.02 Aligned_cols=39 Identities=15% Similarity=0.172 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 008611 513 EHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQN 551 (559)
Q Consensus 513 ~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 551 (559)
|.++.+-+..++++-++|+..+++++.+++.++++|.+.
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (493)
T PTZ00421 445 EGILDERLGRLQALSEKLRTQHEEIKRCREALQKKESIV 483 (493)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666677777777778888888888888887766
No 75
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=93.93 E-value=6.4 Score=37.96 Aligned_cols=148 Identities=12% Similarity=0.057 Sum_probs=83.1
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe--CCEEEEEeccCCCCCCcc
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHTKDPSEII 272 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~ 272 (559)
++.||+..- ....++++|+.+..-...... . -.+++.. ++.+|+....
T Consensus 11 ~g~l~~~D~-----~~~~i~~~~~~~~~~~~~~~~--------------~---~~G~~~~~~~g~l~v~~~~-------- 60 (246)
T PF08450_consen 11 DGRLYWVDI-----PGGRIYRVDPDTGEVEVIDLP--------------G---PNGMAFDRPDGRLYVADSG-------- 60 (246)
T ss_dssp TTEEEEEET-----TTTEEEEEETTTTEEEEEESS--------------S---EEEEEEECTTSEEEEEETT--------
T ss_pred CCEEEEEEc-----CCCEEEEEECCCCeEEEEecC--------------C---CceEEEEccCCEEEEEEcC--------
Confidence 577888732 235799999999887665331 1 2233333 6788887643
Q ss_pred eEEEEECCCCeEEEeccC--CCCCCCccceEEEEECCEEEEEcCcCCCCCCc--CceEEEECCCCceEEecCCCCCCCcc
Q 008611 273 QVKVFDLQTCSWSTLKTY--GKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLL--NDLHILDLETMTWDEIDAVGVPPSPR 348 (559)
Q Consensus 273 ~v~~yd~~t~~W~~~~~~--g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~--~~~~~yd~~t~~W~~~~~~~~~p~~r 348 (559)
.+..+|+.+++++.+... +..+..+..-.++.-++.||+-.-........ ..++++++. .+...+... -.
T Consensus 61 ~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~-----~~ 134 (246)
T PF08450_consen 61 GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG-----LG 134 (246)
T ss_dssp CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE-----ES
T ss_pred ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC-----cc
Confidence 346779999999988643 11123333333333366788753221111111 569999998 666555321 11
Q ss_pred cccEEEEEcCC-EEEEEcCCCCCCCcCceEEEECCC
Q 008611 349 SDHAAAVHAER-YLLIFGGGSHAACFNDLHVLDLQT 383 (559)
Q Consensus 349 ~~~~~~~~~~~-~l~v~GG~~~~~~~~dv~~~d~~~ 383 (559)
.-..+++..++ .||+.--. .+.|+.|++..
T Consensus 135 ~pNGi~~s~dg~~lyv~ds~-----~~~i~~~~~~~ 165 (246)
T PF08450_consen 135 FPNGIAFSPDGKTLYVADSF-----NGRIWRFDLDA 165 (246)
T ss_dssp SEEEEEEETTSSEEEEEETT-----TTEEEEEEEET
T ss_pred cccceEECCcchheeecccc-----cceeEEEeccc
Confidence 22345555554 56664321 34599999853
No 76
>PTZ00420 coronin; Provisional
Probab=93.68 E-value=13 Score=40.73 Aligned_cols=115 Identities=9% Similarity=0.111 Sum_probs=53.8
Q ss_pred CCEEEEEeccCCCCCCcceEEEEECCCCeEEE-eccCCCCCCCccceEEEE----ECCEEEEEcCcCCCCCCcCceEEEE
Q 008611 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWST-LKTYGKPPVSRGGQSVTL----VGTSLVIFGGEDAKRSLLNDLHILD 329 (559)
Q Consensus 255 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~-~~~~g~~p~~r~~~~~~~----~~~~lyv~GG~~~~~~~~~~~~~yd 329 (559)
+|.+++.|+.+ ..+.+||+.+.+=.. +. + ....+....+.. -++..++.+|.+... ...+.+||
T Consensus 178 dG~lLat~s~D------~~IrIwD~Rsg~~i~tl~--g-H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~--~R~VkLWD 246 (568)
T PTZ00420 178 KGNLLSGTCVG------KHMHIIDPRKQEIASSFH--I-HDGGKNTKNIWIDGLGGDDNYILSTGFSKNN--MREMKLWD 246 (568)
T ss_pred CCCEEEEEecC------CEEEEEECCCCcEEEEEe--c-ccCCceeEEEEeeeEcCCCCEEEEEEcCCCC--ccEEEEEE
Confidence 67777777653 358899998764221 11 1 001111111111 234566666665432 24588889
Q ss_pred CCC-CceEEecCCCCCCCcccccEEEEE--cCCEEEEEcCCCCCCCcCceEEEECCCCeeEec
Q 008611 330 LET-MTWDEIDAVGVPPSPRSDHAAAVH--AERYLLIFGGGSHAACFNDLHVLDLQTMEWSRP 389 (559)
Q Consensus 330 ~~t-~~W~~~~~~~~~p~~r~~~~~~~~--~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~ 389 (559)
+.+ ..-....... . ..+..+..+ ..+.+|+.|..+ +.+.+|++....-..+
T Consensus 247 lr~~~~pl~~~~ld---~-~~~~L~p~~D~~tg~l~lsGkGD-----~tIr~~e~~~~~~~~l 300 (568)
T PTZ00420 247 LKNTTSALVTMSID---N-ASAPLIPHYDESTGLIYLIGKGD-----GNCRYYQHSLGSIRKV 300 (568)
T ss_pred CCCCCCceEEEEec---C-CccceEEeeeCCCCCEEEEEECC-----CeEEEEEccCCcEEee
Confidence 774 2211110000 0 001111111 235678777543 3477888766644444
No 77
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=93.63 E-value=9.6 Score=39.44 Aligned_cols=32 Identities=16% Similarity=0.189 Sum_probs=21.2
Q ss_pred cceeEEEECCEEEEEccCCCCcccCcEEEEEcCCCe
Q 008611 187 YEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWA 222 (559)
Q Consensus 187 ~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~ 222 (559)
.-+|.+..+.-.|++||- ...++|++.+.++.
T Consensus 83 ~v~al~s~n~G~~l~ag~----i~g~lYlWelssG~ 114 (476)
T KOG0646|consen 83 PVHALASSNLGYFLLAGT----ISGNLYLWELSSGI 114 (476)
T ss_pred ceeeeecCCCceEEEeec----ccCcEEEEEecccc
Confidence 446667777777888772 23467877777764
No 78
>PRK04922 tolB translocation protein TolB; Provisional
Probab=93.59 E-value=11 Score=39.79 Aligned_cols=146 Identities=12% Similarity=0.085 Sum_probs=78.3
Q ss_pred CcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCC-EEEEEeccCCCCCCcceEEEEECCCCeEEEecc
Q 008611 211 SDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWEN-KLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKT 289 (559)
Q Consensus 211 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~ 289 (559)
..++++|+.+++-..+.... .........-++ +|++.....+ ..+++.+|+.++....+..
T Consensus 228 ~~l~~~dl~~g~~~~l~~~~--------------g~~~~~~~SpDG~~l~~~~s~~g----~~~Iy~~d~~~g~~~~lt~ 289 (433)
T PRK04922 228 SAIYVQDLATGQRELVASFR--------------GINGAPSFSPDGRRLALTLSRDG----NPEIYVMDLGSRQLTRLTN 289 (433)
T ss_pred cEEEEEECCCCCEEEeccCC--------------CCccCceECCCCCEEEEEEeCCC----CceEEEEECCCCCeEECcc
Confidence 57999999988876664321 111111222244 4554433221 2579999999988776642
Q ss_pred CCCCCCCccceEEEEECCE-EEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccccEEEEEcC-CEEEEEcCC
Q 008611 290 YGKPPVSRGGQSVTLVGTS-LVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAE-RYLLIFGGG 367 (559)
Q Consensus 290 ~g~~p~~r~~~~~~~~~~~-lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~-~~l~v~GG~ 367 (559)
. + .........-+++ |++.....+ ...+|.+|+.+..+..+...+ ..........+ ++|++..+.
T Consensus 290 ~---~-~~~~~~~~spDG~~l~f~sd~~g----~~~iy~~dl~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~~~~ 356 (433)
T PRK04922 290 H---F-GIDTEPTWAPDGKSIYFTSDRGG----RPQIYRVAASGGSAERLTFQG-----NYNARASVSPDGKKIAMVHGS 356 (433)
T ss_pred C---C-CCccceEECCCCCEEEEEECCCC----CceEEEEECCCCCeEEeecCC-----CCccCEEECCCCCEEEEEECC
Confidence 1 1 1111111222444 444332221 246999999888888775322 22223334334 445554332
Q ss_pred CCCCCcCceEEEECCCCeeEecc
Q 008611 368 SHAACFNDLHVLDLQTMEWSRPT 390 (559)
Q Consensus 368 ~~~~~~~dv~~~d~~~~~W~~~~ 390 (559)
.+ -..++++|+.+.....+.
T Consensus 357 -~~--~~~I~v~d~~~g~~~~Lt 376 (433)
T PRK04922 357 -GG--QYRIAVMDLSTGSVRTLT 376 (433)
T ss_pred -CC--ceeEEEEECCCCCeEECC
Confidence 11 136999999888877664
No 79
>PRK04792 tolB translocation protein TolB; Provisional
Probab=93.47 E-value=12 Score=39.79 Aligned_cols=146 Identities=12% Similarity=0.134 Sum_probs=79.3
Q ss_pred CcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCC-EEEEEeccCCCCCCcceEEEEECCCCeEEEecc
Q 008611 211 SDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWEN-KLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKT 289 (559)
Q Consensus 211 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~ 289 (559)
..+|++|+.+++-..+.... .........-++ .|++....+ ...+++.+|+.+++.+.+..
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~--------------g~~~~~~wSPDG~~La~~~~~~----g~~~Iy~~dl~tg~~~~lt~ 303 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFP--------------GINGAPRFSPDGKKLALVLSKD----GQPEIYVVDIATKALTRITR 303 (448)
T ss_pred cEEEEEECCCCCeEEecCCC--------------CCcCCeeECCCCCEEEEEEeCC----CCeEEEEEECCCCCeEECcc
Confidence 57999999988766653221 111111112234 565554332 23579999999998887753
Q ss_pred CCCCCCCccceEEEEECC-EEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccccEEEEEcC-CEEEEEcCC
Q 008611 290 YGKPPVSRGGQSVTLVGT-SLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAE-RYLLIFGGG 367 (559)
Q Consensus 290 ~g~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~-~~l~v~GG~ 367 (559)
. . .........-++ .|++.....+ ...+|.+|+.+.++..+...+. .....+...+ +.|++.+ .
T Consensus 304 ~---~-~~~~~p~wSpDG~~I~f~s~~~g----~~~Iy~~dl~~g~~~~Lt~~g~-----~~~~~~~SpDG~~l~~~~-~ 369 (448)
T PRK04792 304 H---R-AIDTEPSWHPDGKSLIFTSERGG----KPQIYRVNLASGKVSRLTFEGE-----QNLGGSITPDGRSMIMVN-R 369 (448)
T ss_pred C---C-CCccceEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEEecCCC-----CCcCeeECCCCCEEEEEE-e
Confidence 2 1 111111122244 4544432222 2479999999999988753221 1112233334 4444443 2
Q ss_pred CCCCCcCceEEEECCCCeeEecc
Q 008611 368 SHAACFNDLHVLDLQTMEWSRPT 390 (559)
Q Consensus 368 ~~~~~~~dv~~~d~~~~~W~~~~ 390 (559)
..+ ...++++|+.+.....+.
T Consensus 370 ~~g--~~~I~~~dl~~g~~~~lt 390 (448)
T PRK04792 370 TNG--KFNIARQDLETGAMQVLT 390 (448)
T ss_pred cCC--ceEEEEEECCCCCeEEcc
Confidence 221 246999999988877664
No 80
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=93.26 E-value=1.3 Score=45.55 Aligned_cols=110 Identities=13% Similarity=0.139 Sum_probs=68.8
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCCCCCcceE
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQV 274 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v 274 (559)
|....+++|. -.-+|.||+.+.+-.++.++.. ++..-...-.+..++.++++-|..+. |
T Consensus 269 G~~~i~~s~r-----rky~ysyDle~ak~~k~~~~~g----------~e~~~~e~FeVShd~~fia~~G~~G~------I 327 (514)
T KOG2055|consen 269 GHSVIFTSGR-----RKYLYSYDLETAKVTKLKPPYG----------VEEKSMERFEVSHDSNFIAIAGNNGH------I 327 (514)
T ss_pred CceEEEeccc-----ceEEEEeeccccccccccCCCC----------cccchhheeEecCCCCeEEEcccCce------E
Confidence 3336666663 2458999999999998876541 11111222234456667777777554 7
Q ss_pred EEEECCCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCCce
Q 008611 275 KVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTW 335 (559)
Q Consensus 275 ~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W 335 (559)
+.+...|++|..-- .++.....++...-+..||++||. ..||++|+.++.-
T Consensus 328 ~lLhakT~eli~s~---KieG~v~~~~fsSdsk~l~~~~~~-------GeV~v~nl~~~~~ 378 (514)
T KOG2055|consen 328 HLLHAKTKELITSF---KIEGVVSDFTFSSDSKELLASGGT-------GEVYVWNLRQNSC 378 (514)
T ss_pred Eeehhhhhhhhhee---eeccEEeeEEEecCCcEEEEEcCC-------ceEEEEecCCcce
Confidence 77777888875432 234334444444445578888885 3699999998744
No 81
>PRK05137 tolB translocation protein TolB; Provisional
Probab=93.07 E-value=14 Score=39.20 Aligned_cols=146 Identities=10% Similarity=0.033 Sum_probs=76.0
Q ss_pred CcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCC-EEEEEeccCCCCCCcceEEEEECCCCeEEEecc
Q 008611 211 SDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWEN-KLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKT 289 (559)
Q Consensus 211 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~ 289 (559)
..++++|+.++....+.... . ........-+| +|++..... ...+++.+|+.+.....+..
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~-------------g-~~~~~~~SPDG~~la~~~~~~----g~~~Iy~~d~~~~~~~~Lt~ 287 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFP-------------G-MTFAPRFSPDGRKVVMSLSQG----GNTDIYTMDLRSGTTTRLTD 287 (435)
T ss_pred CEEEEEECCCCcEEEeecCC-------------C-cccCcEECCCCCEEEEEEecC----CCceEEEEECCCCceEEccC
Confidence 68999999998887764321 1 11111222244 454443322 23579999999988777752
Q ss_pred CCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccccEEEEEcC-CEEEEEcCCC
Q 008611 290 YGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAE-RYLLIFGGGS 368 (559)
Q Consensus 290 ~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~-~~l~v~GG~~ 368 (559)
. +. ........-+++-++|..... + ...+|++|+.+...+.+... ..... ......+ +.|++... .
T Consensus 288 ~---~~-~~~~~~~spDG~~i~f~s~~~-g--~~~Iy~~d~~g~~~~~lt~~----~~~~~-~~~~SpdG~~ia~~~~-~ 354 (435)
T PRK05137 288 S---PA-IDTSPSYSPDGSQIVFESDRS-G--SPQLYVMNADGSNPRRISFG----GGRYS-TPVWSPRGDLIAFTKQ-G 354 (435)
T ss_pred C---CC-ccCceeEcCCCCEEEEEECCC-C--CCeEEEEECCCCCeEEeecC----CCccc-CeEECCCCCEEEEEEc-C
Confidence 1 11 111112222444333432211 1 24699999988877777532 11222 2223333 44444332 1
Q ss_pred CCCCcCceEEEECCCCeeEec
Q 008611 369 HAACFNDLHVLDLQTMEWSRP 389 (559)
Q Consensus 369 ~~~~~~dv~~~d~~~~~W~~~ 389 (559)
.+ ...++++|+.+.....+
T Consensus 355 ~~--~~~i~~~d~~~~~~~~l 373 (435)
T PRK05137 355 GG--QFSIGVMKPDGSGERIL 373 (435)
T ss_pred CC--ceEEEEEECCCCceEec
Confidence 11 24689999877666555
No 82
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=92.91 E-value=9.1 Score=36.72 Aligned_cols=168 Identities=14% Similarity=0.141 Sum_probs=78.0
Q ss_pred cceeEEEECCEEEEEccC--CCCcccCcEEEEE---cCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEE
Q 008611 187 YEHGAAVVQDKMYIYGGN--HNGRYLSDMHILD---LRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSI 261 (559)
Q Consensus 187 ~~~~~~~~~~~lyv~GG~--~~~~~~~~v~~yd---~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~ 261 (559)
.++++.+++++||.+=-. -.+..+...+.|| ...+.|+.-.-....... ......-.-|+.+.+++.-|.+
T Consensus 76 HCmSMGv~~NRLfa~iEtR~~a~~km~~~~Lw~RpMF~~spW~~teL~~~~~~~----~a~~~vTe~HSFa~i~~~~fA~ 151 (367)
T PF12217_consen 76 HCMSMGVVGNRLFAVIETRTVASNKMVRAELWSRPMFHDSPWRITELGTIASFT----SAGVAVTELHSFATIDDNQFAV 151 (367)
T ss_dssp E-B-EEEETTEEEEEEEEEETTT--EEEEEEEEEE-STTS--EEEEEES-TT------------SEEEEEEE-SSS-EEE
T ss_pred eeeeeeeecceeeEEEeehhhhhhhhhhhhhhcccccccCCceeeecccccccc----cccceeeeeeeeeEecCCceeE
Confidence 445677889999987431 1233344555665 356788866543311101 1112345678899999888899
Q ss_pred eccCCCCCCc-ceEEEEEC-----CCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCCce
Q 008611 262 AGHTKDPSEI-IQVKVFDL-----QTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTW 335 (559)
Q Consensus 262 GG~~~~~~~~-~~v~~yd~-----~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W 335 (559)
|=+.++-... -.+..|.. ....=..++. ..-..-+-.++-.+++.||+.--.+.....-..+.+-+.....|
T Consensus 152 GyHnGD~sPRe~G~~yfs~~~~sp~~~vrr~i~s--ey~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w 229 (367)
T PF12217_consen 152 GYHNGDVSPRELGFLYFSDAFASPGVFVRRIIPS--EYERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNW 229 (367)
T ss_dssp EEEE-SSSS-EEEEEEETTTTT-TT--EEEE--G--GG-TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-
T ss_pred EeccCCCCcceeeEEEecccccCCcceeeeechh--hhccccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCch
Confidence 8776652211 11222211 0111111211 11222333455567999999865433333345678888888899
Q ss_pred EEecCCCCCCCcccccE---EEEEcCCEEEEEcC
Q 008611 336 DEIDAVGVPPSPRSDHA---AAVHAERYLLIFGG 366 (559)
Q Consensus 336 ~~~~~~~~~p~~r~~~~---~~~~~~~~l~v~GG 366 (559)
..+... . ...|+ .+.+ ++.|||||-
T Consensus 230 ~slrfp----~-nvHhtnlPFakv-gD~l~mFgs 257 (367)
T PF12217_consen 230 SSLRFP----N-NVHHTNLPFAKV-GDVLYMFGS 257 (367)
T ss_dssp EEEE-T----T----SS---EEEE-TTEEEEEEE
T ss_pred hhcccc----c-cccccCCCceee-CCEEEEEec
Confidence 988632 1 11222 2233 677999985
No 83
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=92.85 E-value=16 Score=39.40 Aligned_cols=130 Identities=20% Similarity=0.249 Sum_probs=66.9
Q ss_pred cceeEEEECCEEEEEccCCCCcccCcEEEEEcCCCe--EEEeeeccccCCCCCCCCCCCCCCccceeEEeC-CEEEEEec
Q 008611 187 YEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWA--WSKIQAKAVAESTESPSPALLTPCAGHSLIPWE-NKLLSIAG 263 (559)
Q Consensus 187 ~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~-~~lyv~GG 263 (559)
...+-++.++.||+.... ..++.+|+.+++ |+.-.... .. ...+ +-.....+..+ +.+|+..
T Consensus 53 ~~~sPvv~~g~vy~~~~~------g~l~AlD~~tG~~~W~~~~~~~------~~-~~~~-~~~~~g~~~~~~~~V~v~~- 117 (488)
T cd00216 53 QEGTPLVVDGDMYFTTSH------SALFALDAATGKVLWRYDPKLP------AD-RGCC-DVVNRGVAYWDPRKVFFGT- 117 (488)
T ss_pred cccCCEEECCEEEEeCCC------CcEEEEECCCChhhceeCCCCC------cc-cccc-ccccCCcEEccCCeEEEec-
Confidence 333456779999987552 478999998764 87532210 00 0000 01112234445 7777642
Q ss_pred cCCCCCCcceEEEEECCCCe--EEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCC---CCcCceEEEECCCC--ceE
Q 008611 264 HTKDPSEIIQVKVFDLQTCS--WSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKR---SLLNDLHILDLETM--TWD 336 (559)
Q Consensus 264 ~~~~~~~~~~v~~yd~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~---~~~~~~~~yd~~t~--~W~ 336 (559)
. ...++.+|..+++ |+.-......+......+.++.++.+|+ |..+... .....++.||..|. .|.
T Consensus 118 ~------~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~ 190 (488)
T cd00216 118 F------DGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWR 190 (488)
T ss_pred C------CCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeE
Confidence 2 2468999988764 8765321000000012223444556554 4322211 12457899999765 586
Q ss_pred Ee
Q 008611 337 EI 338 (559)
Q Consensus 337 ~~ 338 (559)
.-
T Consensus 191 ~~ 192 (488)
T cd00216 191 FY 192 (488)
T ss_pred ee
Confidence 53
No 84
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=92.85 E-value=14 Score=38.66 Aligned_cols=117 Identities=15% Similarity=0.118 Sum_probs=62.1
Q ss_pred CCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEECC-EEEEEcCcCCCCCCcCceEEEECCCC
Q 008611 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGT-SLVIFGGEDAKRSLLNDLHILDLETM 333 (559)
Q Consensus 255 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~yd~~t~ 333 (559)
+++.+++..... ....++++|+.++.-..+.. .+...... ...-++ .|++....++ ..++|.+|+.+.
T Consensus 200 dg~~la~~~~~~---~~~~i~v~d~~~g~~~~~~~---~~~~~~~~-~~spDg~~l~~~~~~~~----~~~i~~~d~~~~ 268 (417)
T TIGR02800 200 DGQKLAYVSFES---GKPEIYVQDLATGQREKVAS---FPGMNGAP-AFSPDGSKLAVSLSKDG----NPDIYVMDLDGK 268 (417)
T ss_pred CCCEEEEEEcCC---CCcEEEEEECCCCCEEEeec---CCCCccce-EECCCCCEEEEEECCCC----CccEEEEECCCC
Confidence 455444544322 23679999999887666642 11111111 112233 5655443322 246999999988
Q ss_pred ceEEecCCCCCCCcccccEEEEEc-CCEEEEEcCCCCCCCcCceEEEECCCCeeEecc
Q 008611 334 TWDEIDAVGVPPSPRSDHAAAVHA-ERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (559)
Q Consensus 334 ~W~~~~~~~~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~~ 390 (559)
....+..... ......... +.+|++.....+ ...+|++|+.+..+..+.
T Consensus 269 ~~~~l~~~~~-----~~~~~~~s~dg~~l~~~s~~~g---~~~iy~~d~~~~~~~~l~ 318 (417)
T TIGR02800 269 QLTRLTNGPG-----IDTEPSWSPDGKSIAFTSDRGG---SPQIYMMDADGGEVRRLT 318 (417)
T ss_pred CEEECCCCCC-----CCCCEEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEee
Confidence 8777653211 111122222 344544432211 247999999888877664
No 85
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=92.56 E-value=3 Score=35.91 Aligned_cols=87 Identities=18% Similarity=0.199 Sum_probs=58.8
Q ss_pred EEeCCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEE-EC
Q 008611 252 IPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHIL-DL 330 (559)
Q Consensus 252 ~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~y-d~ 330 (559)
+.++|-||...-. .......|.+||+.+.+|+.+..............++.++++|-++.-........-++|++ |.
T Consensus 2 icinGvly~~a~~--~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~ 79 (129)
T PF08268_consen 2 ICINGVLYWLAWS--EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDY 79 (129)
T ss_pred EEECcEEEeEEEE--CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecc
Confidence 4568888888776 22456789999999999999863211234456667778889888876543322123468888 46
Q ss_pred CCCceEEecC
Q 008611 331 ETMTWDEIDA 340 (559)
Q Consensus 331 ~t~~W~~~~~ 340 (559)
....|.....
T Consensus 80 ~k~~Wsk~~~ 89 (129)
T PF08268_consen 80 EKQEWSKKHI 89 (129)
T ss_pred ccceEEEEEE
Confidence 6778987643
No 86
>PRK00178 tolB translocation protein TolB; Provisional
Probab=92.35 E-value=17 Score=38.40 Aligned_cols=146 Identities=12% Similarity=0.083 Sum_probs=78.7
Q ss_pred CcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCC-EEEEEeccCCCCCCcceEEEEECCCCeEEEecc
Q 008611 211 SDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWEN-KLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKT 289 (559)
Q Consensus 211 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~ 289 (559)
..+|++|+.+++-+.+.... .........-+| +|++.....+ ..+++++|+.+.....+..
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~--------------g~~~~~~~SpDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~ 284 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFE--------------GLNGAPAWSPDGSKLAFVLSKDG----NPEIYVMDLASRQLSRVTN 284 (430)
T ss_pred CEEEEEECCCCCEEEccCCC--------------CCcCCeEECCCCCEEEEEEccCC----CceEEEEECCCCCeEEccc
Confidence 57999999998877664321 111111112244 4544332211 2579999999999887752
Q ss_pred CCCCCCCccceEEEEECC-EEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccccEEEEE-cCCEEEEEcCC
Q 008611 290 YGKPPVSRGGQSVTLVGT-SLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVH-AERYLLIFGGG 367 (559)
Q Consensus 290 ~g~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~~l~v~GG~ 367 (559)
. + .........-++ .|++.....+ ...+|.+|+.+..+..+...+ ......... +++.|++....
T Consensus 285 ~---~-~~~~~~~~spDg~~i~f~s~~~g----~~~iy~~d~~~g~~~~lt~~~-----~~~~~~~~Spdg~~i~~~~~~ 351 (430)
T PRK00178 285 H---P-AIDTEPFWGKDGRTLYFTSDRGG----KPQIYKVNVNGGRAERVTFVG-----NYNARPRLSADGKTLVMVHRQ 351 (430)
T ss_pred C---C-CCcCCeEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEeecCC-----CCccceEECCCCCEEEEEEcc
Confidence 1 1 111111122234 4554432221 246999999999888775321 112222232 34455554432
Q ss_pred CCCCCcCceEEEECCCCeeEecc
Q 008611 368 SHAACFNDLHVLDLQTMEWSRPT 390 (559)
Q Consensus 368 ~~~~~~~dv~~~d~~~~~W~~~~ 390 (559)
. + ...++++|+.+.....+.
T Consensus 352 ~-~--~~~l~~~dl~tg~~~~lt 371 (430)
T PRK00178 352 D-G--NFHVAAQDLQRGSVRILT 371 (430)
T ss_pred C-C--ceEEEEEECCCCCEEEcc
Confidence 2 1 235999999998887774
No 87
>PRK04043 tolB translocation protein TolB; Provisional
Probab=92.28 E-value=17 Score=38.34 Aligned_cols=148 Identities=12% Similarity=0.114 Sum_probs=83.3
Q ss_pred CcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCC-EEEEEeccCCCCCCcceEEEEECCCCeEEEecc
Q 008611 211 SDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWEN-KLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKT 289 (559)
Q Consensus 211 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~ 289 (559)
.++|++|+.+++=+.+.... .........-++ +|++.-... ...++|.+|+.+..++.+..
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~--------------g~~~~~~~SPDG~~la~~~~~~----g~~~Iy~~dl~~g~~~~LT~ 274 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQ--------------GMLVVSDVSKDGSKLLLTMAPK----GQPDIYLYDTNTKTLTQITN 274 (419)
T ss_pred CEEEEEECCCCcEEEEecCC--------------CcEEeeEECCCCCEEEEEEccC----CCcEEEEEECCCCcEEEccc
Confidence 38999999988777664321 111111222244 555544332 24689999999999988853
Q ss_pred CCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCC
Q 008611 290 YGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGS 368 (559)
Q Consensus 290 ~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~ 368 (559)
. +. ........- +.+||+.-...+ ..+||++|+.+...+.+...+. ... ...-.++.|+......
T Consensus 275 ~---~~-~d~~p~~SPDG~~I~F~Sdr~g----~~~Iy~~dl~~g~~~rlt~~g~-----~~~-~~SPDG~~Ia~~~~~~ 340 (419)
T PRK04043 275 Y---PG-IDVNGNFVEDDKRIVFVSDRLG----YPNIFMKKLNSGSVEQVVFHGK-----NNS-SVSTYKNYIVYSSRET 340 (419)
T ss_pred C---CC-ccCccEECCCCCEEEEEECCCC----CceEEEEECCCCCeEeCccCCC-----cCc-eECCCCCEEEEEEcCC
Confidence 2 21 111111122 346666543322 3579999999999887754321 111 2222344444443322
Q ss_pred CCC---CcCceEEEECCCCeeEecc
Q 008611 369 HAA---CFNDLHVLDLQTMEWSRPT 390 (559)
Q Consensus 369 ~~~---~~~dv~~~d~~~~~W~~~~ 390 (559)
... ...+++++|+.+..+..+.
T Consensus 341 ~~~~~~~~~~I~v~d~~~g~~~~LT 365 (419)
T PRK04043 341 NNEFGKNTFNLYLISTNSDYIRRLT 365 (419)
T ss_pred CcccCCCCcEEEEEECCCCCeEECC
Confidence 111 2358999999999998885
No 88
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=92.10 E-value=4.3 Score=43.08 Aligned_cols=75 Identities=16% Similarity=0.152 Sum_probs=42.2
Q ss_pred CCccceEEEEE--CCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCC
Q 008611 295 VSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAAC 372 (559)
Q Consensus 295 ~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~ 372 (559)
.|+.+.-++.. .-.||+.|- -.+||+||++.++|-..-... .+-..++.+.- -+.|+.+||..
T Consensus 132 IP~~GRDm~y~~~scDly~~gs-------g~evYRlNLEqGrfL~P~~~~---~~~lN~v~in~-~hgLla~Gt~~---- 196 (703)
T KOG2321|consen 132 IPKFGRDMKYHKPSCDLYLVGS-------GSEVYRLNLEQGRFLNPFETD---SGELNVVSINE-EHGLLACGTED---- 196 (703)
T ss_pred cCcCCccccccCCCccEEEeec-------CcceEEEEccccccccccccc---cccceeeeecC-ccceEEecccC----
Confidence 44444444443 335666552 467999999999996543221 11112222211 23489999854
Q ss_pred cCceEEEECCCCe
Q 008611 373 FNDLHVLDLQTME 385 (559)
Q Consensus 373 ~~dv~~~d~~~~~ 385 (559)
+.|..||+.+.+
T Consensus 197 -g~VEfwDpR~ks 208 (703)
T KOG2321|consen 197 -GVVEFWDPRDKS 208 (703)
T ss_pred -ceEEEecchhhh
Confidence 457888887653
No 89
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=91.92 E-value=12 Score=35.59 Aligned_cols=153 Identities=16% Similarity=0.173 Sum_probs=85.2
Q ss_pred EEEECCEEEEEccCCCCcccCcEEEEEcCCC--eEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCCC
Q 008611 191 AAVVQDKMYIYGGNHNGRYLSDMHILDLRSW--AWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDP 268 (559)
Q Consensus 191 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~ 268 (559)
.+..++.||+..+. +.++++|..++ .|+...... +..+ .+........++.+|+...
T Consensus 72 ~~~~~~~v~v~~~~------~~l~~~d~~tG~~~W~~~~~~~---------~~~~-~~~~~~~~~~~~~~~~~~~----- 130 (238)
T PF13360_consen 72 PVVDGGRVYVGTSD------GSLYALDAKTGKVLWSIYLTSS---------PPAG-VRSSSSPAVDGDRLYVGTS----- 130 (238)
T ss_dssp EEEETTEEEEEETT------SEEEEEETTTSCEEEEEEE-SS---------CTCS-TB--SEEEEETTEEEEEET-----
T ss_pred eeecccccccccce------eeeEecccCCcceeeeeccccc---------cccc-cccccCceEecCEEEEEec-----
Confidence 47778999888631 37999998876 587422211 1111 2233334444666666543
Q ss_pred CCcceEEEEECCCCe--EEEeccCCCCCCC-----ccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCCc--eEEec
Q 008611 269 SEIIQVKVFDLQTCS--WSTLKTYGKPPVS-----RGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMT--WDEID 339 (559)
Q Consensus 269 ~~~~~v~~yd~~t~~--W~~~~~~g~~p~~-----r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~ 339 (559)
...+..+|+.+++ |...........+ ......+..++.+|++.+.. .+..+|..+.. |+..
T Consensus 131 --~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g-------~~~~~d~~tg~~~w~~~- 200 (238)
T PF13360_consen 131 --SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG-------RVVAVDLATGEKLWSKP- 200 (238)
T ss_dssp --CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS-------SEEEEETTTTEEEEEEC-
T ss_pred --cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCC-------eEEEEECCCCCEEEEec-
Confidence 3468999999875 7765421110010 01122333357888877543 25667999887 8433
Q ss_pred CCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCe--eE
Q 008611 340 AVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTME--WS 387 (559)
Q Consensus 340 ~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~--W~ 387 (559)
.. . ........++.||+.. . ...++++|+.+++ |.
T Consensus 201 ~~-----~--~~~~~~~~~~~l~~~~-~-----~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 201 IS-----G--IYSLPSVDGGTLYVTS-S-----DGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp SS--------ECECEECCCTEEEEEE-T-----TTEEEEEETTTTEEEEE
T ss_pred CC-----C--ccCCceeeCCEEEEEe-C-----CCEEEEEECCCCCEEeE
Confidence 22 1 1222344567677765 2 2569999999874 64
No 90
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=91.73 E-value=14 Score=36.27 Aligned_cols=106 Identities=19% Similarity=0.166 Sum_probs=58.2
Q ss_pred ccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEE----eCCEEEEEeccCCCCCCcceEEEEECCCCeE
Q 008611 209 YLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIP----WENKLLSIAGHTKDPSEIIQVKVFDLQTCSW 284 (559)
Q Consensus 209 ~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~----~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W 284 (559)
-.+.++.||..+++-+.+-... -.-+..-+|-.+-. +++.||+.-+- +...--+|..|..++.=
T Consensus 76 KYSHVH~yd~e~~~VrLLWkes---------ih~~~~WaGEVSdIlYdP~~D~LLlAR~D---Gh~nLGvy~ldr~~g~~ 143 (339)
T PF09910_consen 76 KYSHVHEYDTENDSVRLLWKES---------IHDKTKWAGEVSDILYDPYEDRLLLARAD---GHANLGVYSLDRRTGKA 143 (339)
T ss_pred ccceEEEEEcCCCeEEEEEecc---------cCCccccccchhheeeCCCcCEEEEEecC---CcceeeeEEEcccCCce
Confidence 3578999999988755442221 00011111211111 25677776442 23345689999999988
Q ss_pred EEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCCce
Q 008611 285 STLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTW 335 (559)
Q Consensus 285 ~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W 335 (559)
+.+.. .|.... +.+.+..+|-+ +.-..-...+.+||+.+++|
T Consensus 144 ~~L~~---~ps~KG---~~~~D~a~F~i---~~~~~g~~~i~~~Dli~~~~ 185 (339)
T PF09910_consen 144 EKLSS---NPSLKG---TLVHDYACFGI---NNFHKGVSGIHCLDLISGKW 185 (339)
T ss_pred eeccC---CCCcCc---eEeeeeEEEec---cccccCCceEEEEEccCCeE
Confidence 88863 343322 22222222222 22112257899999999999
No 91
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=91.53 E-value=14 Score=35.60 Aligned_cols=115 Identities=21% Similarity=0.279 Sum_probs=56.0
Q ss_pred eeEEeCCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccce--EEEEECCEEEEEcCcCCC---------
Q 008611 250 SLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQ--SVTLVGTSLVIFGGEDAK--------- 318 (559)
Q Consensus 250 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~--~~~~~~~~lyv~GG~~~~--------- 318 (559)
+.-.++|.||+.--.......-+.+.+-+.....|+.+. .|....+. -.+.+++.|||||-....
T Consensus 195 CvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slr----fp~nvHhtnlPFakvgD~l~mFgsERA~~EWE~G~~D 270 (367)
T PF12217_consen 195 CVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLR----FPNNVHHTNLPFAKVGDVLYMFGSERAENEWEGGEPD 270 (367)
T ss_dssp EEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-----TT---SS---EEEETTEEEEEEE-SSTT-SSTT---
T ss_pred hhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhcc----ccccccccCCCceeeCCEEEEEeccccccccccCCCc
Confidence 334469999998654433355567888888888999996 34332222 246679999999863110
Q ss_pred CCCc---Cce--EE-----EECCCCceEEecC---CCCCCCcccccEEEEEcCCEE-EEEcCCC
Q 008611 319 RSLL---NDL--HI-----LDLETMTWDEIDA---VGVPPSPRSDHAAAVHAERYL-LIFGGGS 368 (559)
Q Consensus 319 ~~~~---~~~--~~-----yd~~t~~W~~~~~---~~~~p~~r~~~~~~~~~~~~l-~v~GG~~ 368 (559)
.++- ... .+ +.++.-+|..+.. .|..-..-.+.+.+++.++.| |||||.+
T Consensus 271 ~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdqIYqG~ivNSavGVGSv~~KD~~lyy~FGgED 334 (367)
T PF12217_consen 271 NRYRANYPRTFMLKVNVSDWSLDDVEWVNITDQIYQGGIVNSAVGVGSVVVKDGWLYYIFGGED 334 (367)
T ss_dssp --SS-B--EEEEEEEETTT---TT---EEEEE-BB--SSS---SEEEEEEEETTEEEEEEEEB-
T ss_pred ccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEECCEEEEEecCcc
Confidence 1111 011 11 2445556766642 122333444556667778865 6899843
No 92
>PRK04792 tolB translocation protein TolB; Provisional
Probab=91.35 E-value=23 Score=37.80 Aligned_cols=104 Identities=17% Similarity=0.208 Sum_probs=58.3
Q ss_pred ceEEEEECCCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCccccc
Q 008611 272 IQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDH 351 (559)
Q Consensus 272 ~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~ 351 (559)
..++.+|+.+++-..+.. .+..........-+..|++....++ ..+||.+|+.+...+.+.... -...
T Consensus 242 ~~L~~~dl~tg~~~~lt~---~~g~~~~~~wSPDG~~La~~~~~~g----~~~Iy~~dl~tg~~~~lt~~~-----~~~~ 309 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTS---FPGINGAPRFSPDGKKLALVLSKDG----QPEIYVVDIATKALTRITRHR-----AIDT 309 (448)
T ss_pred cEEEEEECCCCCeEEecC---CCCCcCCeeECCCCCEEEEEEeCCC----CeEEEEEECCCCCeEECccCC-----CCcc
Confidence 579999999887766642 2211111111112335665543322 257999999999888775321 1112
Q ss_pred EEEEEcC-CEEEEEcCCCCCCCcCceEEEECCCCeeEecc
Q 008611 352 AAAVHAE-RYLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (559)
Q Consensus 352 ~~~~~~~-~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~~ 390 (559)
..+...+ ..|++..... + ..++|++|+.+.++..+.
T Consensus 310 ~p~wSpDG~~I~f~s~~~-g--~~~Iy~~dl~~g~~~~Lt 346 (448)
T PRK04792 310 EPSWHPDGKSLIFTSERG-G--KPQIYRVNLASGKVSRLT 346 (448)
T ss_pred ceEECCCCCEEEEEECCC-C--CceEEEEECCCCCEEEEe
Confidence 2233334 4444443221 1 257999999998888774
No 93
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=91.08 E-value=21 Score=36.89 Aligned_cols=154 Identities=16% Similarity=0.197 Sum_probs=80.2
Q ss_pred EEEECCEEEEEccCCCCcccCcEEEEEcCCC--eEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCCC
Q 008611 191 AAVVQDKMYIYGGNHNGRYLSDMHILDLRSW--AWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDP 268 (559)
Q Consensus 191 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~ 268 (559)
.++.++.+|+.+. -..++.||+.++ .|+..... ....+.+..++.+|+..+
T Consensus 101 p~v~~~~v~v~~~------~g~l~ald~~tG~~~W~~~~~~----------------~~~~~p~v~~~~v~v~~~----- 153 (377)
T TIGR03300 101 VGADGGLVFVGTE------KGEVIALDAEDGKELWRAKLSS----------------EVLSPPLVANGLVVVRTN----- 153 (377)
T ss_pred eEEcCCEEEEEcC------CCEEEEEECCCCcEeeeeccCc----------------eeecCCEEECCEEEEECC-----
Confidence 4455777776543 146999998776 48643211 011223445677777532
Q ss_pred CCcceEEEEECCCCe--EEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCC--ceEEecCC--C
Q 008611 269 SEIIQVKVFDLQTCS--WSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETM--TWDEIDAV--G 342 (559)
Q Consensus 269 ~~~~~v~~yd~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~~~~--~ 342 (559)
...++.+|+.+++ |+.-... +....+...+.+..++.+| +|..+ ..++.+|+.+. .|+.-... +
T Consensus 154 --~g~l~a~d~~tG~~~W~~~~~~-~~~~~~~~~sp~~~~~~v~-~~~~~------g~v~ald~~tG~~~W~~~~~~~~g 223 (377)
T TIGR03300 154 --DGRLTALDAATGERLWTYSRVT-PALTLRGSASPVIADGGVL-VGFAG------GKLVALDLQTGQPLWEQRVALPKG 223 (377)
T ss_pred --CCeEEEEEcCCCceeeEEccCC-CceeecCCCCCEEECCEEE-EECCC------CEEEEEEccCCCEeeeeccccCCC
Confidence 2358999998764 8765321 1101122233344566554 44321 35889998765 47543211 0
Q ss_pred CCCCcc---cccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCC--eeEe
Q 008611 343 VPPSPR---SDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTM--EWSR 388 (559)
Q Consensus 343 ~~p~~r---~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~--~W~~ 388 (559)
.....| ...+.+ +.++.+|+.+.. ..+++||+.+. .|..
T Consensus 224 ~~~~~~~~~~~~~p~-~~~~~vy~~~~~------g~l~a~d~~tG~~~W~~ 267 (377)
T TIGR03300 224 RTELERLVDVDGDPV-VDGGQVYAVSYQ------GRVAALDLRSGRVLWKR 267 (377)
T ss_pred CCchhhhhccCCccE-EECCEEEEEEcC------CEEEEEECCCCcEEEee
Confidence 000001 112223 346667775432 35899999775 4754
No 94
>PRK13684 Ycf48-like protein; Provisional
Probab=90.97 E-value=20 Score=36.53 Aligned_cols=172 Identities=11% Similarity=0.097 Sum_probs=83.9
Q ss_pred eEEecccCCCCCCcccceeEEEE-CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccce
Q 008611 172 QWIAPPISGQRPKARYEHGAAVV-QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHS 250 (559)
Q Consensus 172 ~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~ 250 (559)
+|+.+...-..| ...+....+ ++.+|+.|.. ..+++=+-.-.+|+.+... ..-..+.
T Consensus 120 tW~~~~~~~~~~--~~~~~i~~~~~~~~~~~g~~------G~i~~S~DgG~tW~~~~~~--------------~~g~~~~ 177 (334)
T PRK13684 120 NWTRIPLSEKLP--GSPYLITALGPGTAEMATNV------GAIYRTTDGGKNWEALVED--------------AAGVVRN 177 (334)
T ss_pred CCeEccCCcCCC--CCceEEEEECCCcceeeecc------ceEEEECCCCCCceeCcCC--------------CcceEEE
Confidence 899876310122 222233334 3456666541 2355544456799987542 1222334
Q ss_pred eEEeCCEEEEEeccCCCCCCcceEEE-EECCCCeEEEeccCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEEE
Q 008611 251 LIPWENKLLSIAGHTKDPSEIIQVKV-FDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHIL 328 (559)
Q Consensus 251 ~~~~~~~lyv~GG~~~~~~~~~~v~~-yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~y 328 (559)
+....+..|++.|..+. ++. .|....+|+.+. .+..+.-++++.. ++.++++|... ..++
T Consensus 178 i~~~~~g~~v~~g~~G~------i~~s~~~gg~tW~~~~----~~~~~~l~~i~~~~~g~~~~vg~~G--------~~~~ 239 (334)
T PRK13684 178 LRRSPDGKYVAVSSRGN------FYSTWEPGQTAWTPHQ----RNSSRRLQSMGFQPDGNLWMLARGG--------QIRF 239 (334)
T ss_pred EEECCCCeEEEEeCCce------EEEEcCCCCCeEEEee----CCCcccceeeeEcCCCCEEEEecCC--------EEEE
Confidence 44444444444443222 222 233445799885 3444444555444 56788887431 2233
Q ss_pred E--CCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEecc
Q 008611 329 D--LETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (559)
Q Consensus 329 d--~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~~ 390 (559)
. -.-.+|+.+.... .......+++++..++.+|++|... -++.-.-...+|..+.
T Consensus 240 ~s~d~G~sW~~~~~~~-~~~~~~l~~v~~~~~~~~~~~G~~G------~v~~S~d~G~tW~~~~ 296 (334)
T PRK13684 240 NDPDDLESWSKPIIPE-ITNGYGYLDLAYRTPGEIWAGGGNG------TLLVSKDGGKTWEKDP 296 (334)
T ss_pred ccCCCCCccccccCCc-cccccceeeEEEcCCCCEEEEcCCC------eEEEeCCCCCCCeECC
Confidence 2 2335898763210 0011222344455466688887632 2333333456899874
No 95
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=90.77 E-value=1.3 Score=32.52 Aligned_cols=28 Identities=18% Similarity=0.359 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhhhh
Q 008611 526 LESSLSKEKLQSIQLKQDLTEAESQNTD 553 (559)
Q Consensus 526 ~~~~l~~~~~~~~~l~~~~~~~~~~~~~ 553 (559)
.+.+|++...++..|.++|..++.++++
T Consensus 30 ~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 30 FESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433
No 96
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=90.67 E-value=0.84 Score=35.17 Aligned_cols=51 Identities=27% Similarity=0.242 Sum_probs=37.1
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhh
Q 008611 507 KHPETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKV 557 (559)
Q Consensus 507 ~~~~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ke 557 (559)
+.+.++++.|+.|++|-+.+..+.......+.+|+.++.+.+..+.++.+.
T Consensus 5 ~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~ 55 (74)
T PF12329_consen 5 KKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKK 55 (74)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888999999998888777777777777777666666666555443
No 97
>PRK04922 tolB translocation protein TolB; Provisional
Probab=90.55 E-value=26 Score=37.11 Aligned_cols=105 Identities=12% Similarity=0.030 Sum_probs=57.1
Q ss_pred cceEEEEECCCCeEEEeccCCCCCCCccceEEEEECC-EEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCccc
Q 008611 271 IIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGT-SLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRS 349 (559)
Q Consensus 271 ~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~ 349 (559)
...++++|+.+++-..+.. .+.... .....-++ +|++....++ ..+|+++|+.+.....+... ...
T Consensus 227 ~~~l~~~dl~~g~~~~l~~---~~g~~~-~~~~SpDG~~l~~~~s~~g----~~~Iy~~d~~~g~~~~lt~~-----~~~ 293 (433)
T PRK04922 227 RSAIYVQDLATGQRELVAS---FRGING-APSFSPDGRRLALTLSRDG----NPEIYVMDLGSRQLTRLTNH-----FGI 293 (433)
T ss_pred CcEEEEEECCCCCEEEecc---CCCCcc-CceECCCCCEEEEEEeCCC----CceEEEEECCCCCeEECccC-----CCC
Confidence 3579999999888777652 221111 11112234 5554433222 24799999998887666432 111
Q ss_pred ccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEecc
Q 008611 350 DHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (559)
Q Consensus 350 ~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~~ 390 (559)
........++.-++|.....+ ..++|.+|+.+..+..+.
T Consensus 294 ~~~~~~spDG~~l~f~sd~~g--~~~iy~~dl~~g~~~~lt 332 (433)
T PRK04922 294 DTEPTWAPDGKSIYFTSDRGG--RPQIYRVAASGGSAERLT 332 (433)
T ss_pred ccceEECCCCCEEEEEECCCC--CceEEEEECCCCCeEEee
Confidence 122334444434444321111 247999999888887764
No 98
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=90.10 E-value=11 Score=32.26 Aligned_cols=87 Identities=15% Similarity=0.230 Sum_probs=60.8
Q ss_pred EEECCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCCCCCc
Q 008611 192 AVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEI 271 (559)
Q Consensus 192 ~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~ 271 (559)
+.++|.||...-. .....+.+.+||+.+.+|+.+.... ...........+.++|+|-++.-........
T Consensus 2 icinGvly~~a~~-~~~~~~~IvsFDv~~E~f~~i~~P~----------~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~ 70 (129)
T PF08268_consen 2 ICINGVLYWLAWS-EDSDNNVIVSFDVRSEKFRFIKLPE----------DPYSSDCSSTLIEYKGKLALVSYNDQGEPDS 70 (129)
T ss_pred EEECcEEEeEEEE-CCCCCcEEEEEEcCCceEEEEEeee----------eeccccCccEEEEeCCeEEEEEecCCCCcce
Confidence 3468888877664 3334577999999999999886520 1235566777888899998876654432345
Q ss_pred ceEEEEE-CCCCeEEEecc
Q 008611 272 IQVKVFD-LQTCSWSTLKT 289 (559)
Q Consensus 272 ~~v~~yd-~~t~~W~~~~~ 289 (559)
-++|+++ ....+|++...
T Consensus 71 ~~iWvLeD~~k~~Wsk~~~ 89 (129)
T PF08268_consen 71 IDIWVLEDYEKQEWSKKHI 89 (129)
T ss_pred EEEEEeeccccceEEEEEE
Confidence 6888884 55778997754
No 99
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=89.16 E-value=10 Score=36.90 Aligned_cols=111 Identities=20% Similarity=0.223 Sum_probs=72.3
Q ss_pred eeEE-eCCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEE
Q 008611 250 SLIP-WENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHIL 328 (559)
Q Consensus 250 ~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~y 328 (559)
+... .+|.||.--|..+. +.+..||+.+++-.... ++|..-.+=+++.++++||..-=. .+..++|
T Consensus 49 GL~~~~~g~LyESTG~yG~----S~l~~~d~~tg~~~~~~---~l~~~~FgEGit~~~d~l~qLTWk------~~~~f~y 115 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGLYGQ----SSLRKVDLETGKVLQSV---PLPPRYFGEGITILGDKLYQLTWK------EGTGFVY 115 (264)
T ss_dssp EEEEEETTEEEEEECSTTE----EEEEEEETTTSSEEEEE---E-TTT--EEEEEEETTEEEEEESS------SSEEEEE
T ss_pred cEEecCCCEEEEeCCCCCc----EEEEEEECCCCcEEEEE---ECCccccceeEEEECCEEEEEEec------CCeEEEE
Confidence 3444 47889888887553 68999999999755443 467777788899999999998643 3457899
Q ss_pred ECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCe
Q 008611 329 DLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTME 385 (559)
Q Consensus 329 d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~ 385 (559)
|..+ ...+... +.+.-+-+++. .+..|++--|. +.++.+||.+.+
T Consensus 116 d~~t--l~~~~~~---~y~~EGWGLt~-dg~~Li~SDGS------~~L~~~dP~~f~ 160 (264)
T PF05096_consen 116 DPNT--LKKIGTF---PYPGEGWGLTS-DGKRLIMSDGS------SRLYFLDPETFK 160 (264)
T ss_dssp ETTT--TEEEEEE---E-SSS--EEEE-CSSCEEEE-SS------SEEEEE-TTT-S
T ss_pred cccc--ceEEEEE---ecCCcceEEEc-CCCEEEEECCc------cceEEECCcccc
Confidence 9876 4444322 34445666764 45668888774 579999998754
No 100
>PRK03629 tolB translocation protein TolB; Provisional
Probab=88.60 E-value=36 Score=36.01 Aligned_cols=148 Identities=14% Similarity=0.106 Sum_probs=77.0
Q ss_pred CcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCC-EEEEEeccCCCCCCcceEEEEECCCCeEEEecc
Q 008611 211 SDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWEN-KLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKT 289 (559)
Q Consensus 211 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~ 289 (559)
..++++|+.+++-+.+.... .........-+| +|++.....+ ...++.+|+.++....+..
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~--------------~~~~~~~~SPDG~~La~~~~~~g----~~~I~~~d~~tg~~~~lt~ 284 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFP--------------RHNGAPAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTD 284 (429)
T ss_pred cEEEEEECCCCCeEEccCCC--------------CCcCCeEECCCCCEEEEEEcCCC----CcEEEEEECCCCCEEEccC
Confidence 57899999888766653321 111111222244 4555433221 2369999999988877752
Q ss_pred CCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCC
Q 008611 290 YGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSH 369 (559)
Q Consensus 290 ~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~ 369 (559)
. +. ........-+++.++|...... ...+|.+|+.+..-..+...+ . .........++..+++.+...
T Consensus 285 ~---~~-~~~~~~wSPDG~~I~f~s~~~g---~~~Iy~~d~~~g~~~~lt~~~----~-~~~~~~~SpDG~~Ia~~~~~~ 352 (429)
T PRK03629 285 G---RS-NNTEPTWFPDSQNLAYTSDQAG---RPQVYKVNINGGAPQRITWEG----S-QNQDADVSSDGKFMVMVSSNG 352 (429)
T ss_pred C---CC-CcCceEECCCCCEEEEEeCCCC---CceEEEEECCCCCeEEeecCC----C-CccCEEECCCCCEEEEEEccC
Confidence 1 11 1111111224444444332111 247999999888777664321 1 112233333443444433222
Q ss_pred CCCcCceEEEECCCCeeEecc
Q 008611 370 AACFNDLHVLDLQTMEWSRPT 390 (559)
Q Consensus 370 ~~~~~dv~~~d~~~~~W~~~~ 390 (559)
+ ..+++++|+.+..+..+.
T Consensus 353 g--~~~I~~~dl~~g~~~~Lt 371 (429)
T PRK03629 353 G--QQHIAKQDLATGGVQVLT 371 (429)
T ss_pred C--CceEEEEECCCCCeEEeC
Confidence 2 246999999999888774
No 101
>PRK02889 tolB translocation protein TolB; Provisional
Probab=88.57 E-value=36 Score=35.97 Aligned_cols=147 Identities=10% Similarity=0.019 Sum_probs=75.3
Q ss_pred CcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCC-EEEEEeccCCCCCCcceEEEEECCCCeEEEecc
Q 008611 211 SDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWEN-KLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKT 289 (559)
Q Consensus 211 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~ 289 (559)
..+|++|+.+++=..+... + ....+....-++ +|++..... ...++|.+|+.+.....+..
T Consensus 220 ~~I~~~dl~~g~~~~l~~~-------------~-g~~~~~~~SPDG~~la~~~~~~----g~~~Iy~~d~~~~~~~~lt~ 281 (427)
T PRK02889 220 PVVYVHDLATGRRRVVANF-------------K-GSNSAPAWSPDGRTLAVALSRD----GNSQIYTVNADGSGLRRLTQ 281 (427)
T ss_pred cEEEEEECCCCCEEEeecC-------------C-CCccceEECCCCCEEEEEEccC----CCceEEEEECCCCCcEECCC
Confidence 4699999988865554321 1 111111222244 555443332 23679999998887666642
Q ss_pred CCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccccEEEEEc-CCEEEEEcCCC
Q 008611 290 YGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHA-ERYLLIFGGGS 368 (559)
Q Consensus 290 ~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~-~~~l~v~GG~~ 368 (559)
. . .........-+++.++|..... + ...+|.++..+...+.+...+ .......+.. ++.|+.....
T Consensus 282 ~---~-~~~~~~~wSpDG~~l~f~s~~~-g--~~~Iy~~~~~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~s~~- 348 (427)
T PRK02889 282 S---S-GIDTEPFFSPDGRSIYFTSDRG-G--APQIYRMPASGGAAQRVTFTG-----SYNTSPRISPDGKLLAYISRV- 348 (427)
T ss_pred C---C-CCCcCeEEcCCCCEEEEEecCC-C--CcEEEEEECCCCceEEEecCC-----CCcCceEECCCCCEEEEEEcc-
Confidence 1 1 1111112222444334432211 1 246899998888877775321 1122233333 4444443332
Q ss_pred CCCCcCceEEEECCCCeeEecc
Q 008611 369 HAACFNDLHVLDLQTMEWSRPT 390 (559)
Q Consensus 369 ~~~~~~dv~~~d~~~~~W~~~~ 390 (559)
++. ..++++|+.+.....+.
T Consensus 349 ~g~--~~I~v~d~~~g~~~~lt 368 (427)
T PRK02889 349 GGA--FKLYVQDLATGQVTALT 368 (427)
T ss_pred CCc--EEEEEEECCCCCeEEcc
Confidence 221 36999999888777664
No 102
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=88.52 E-value=0.78 Score=47.91 Aligned_cols=48 Identities=15% Similarity=0.127 Sum_probs=24.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhh
Q 008611 510 ETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKV 557 (559)
Q Consensus 510 ~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ke 557 (559)
++.|....+|+++++.++++++....+.+.++++|++++.+++.|+.+
T Consensus 72 teqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Q 119 (475)
T PRK13729 72 TEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQ 119 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555555544444445555555555555555444
No 103
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=88.48 E-value=42 Score=36.62 Aligned_cols=129 Identities=14% Similarity=0.144 Sum_probs=68.1
Q ss_pred eeEEEECCEEEEEccCCCCcccCcEEEEEcCCC--eEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCC
Q 008611 189 HGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSW--AWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTK 266 (559)
Q Consensus 189 ~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~ 266 (559)
.+-++.++.||+... .+.++.+|..|+ .|+.-..... ...+.........+.+..+++||+.. .
T Consensus 63 stPvv~~g~vyv~s~------~g~v~AlDa~TGk~lW~~~~~~~~-----~~~~~~~~~~~~rg~av~~~~v~v~t-~-- 128 (527)
T TIGR03075 63 SQPLVVDGVMYVTTS------YSRVYALDAKTGKELWKYDPKLPD-----DVIPVMCCDVVNRGVALYDGKVFFGT-L-- 128 (527)
T ss_pred cCCEEECCEEEEECC------CCcEEEEECCCCceeeEecCCCCc-----ccccccccccccccceEECCEEEEEc-C--
Confidence 345667999999654 236999999885 5875422100 00000001112233455678887632 2
Q ss_pred CCCCcceEEEEECCCCe--EEEeccCCCCCCC-ccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCC--ceEEe
Q 008611 267 DPSEIIQVKVFDLQTCS--WSTLKTYGKPPVS-RGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETM--TWDEI 338 (559)
Q Consensus 267 ~~~~~~~v~~yd~~t~~--W~~~~~~g~~p~~-r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~ 338 (559)
...+..+|..|++ |+.-.. ..... ....+-++.++.||+-..... ......|+.||..|. .|+.-
T Consensus 129 ----dg~l~ALDa~TGk~~W~~~~~--~~~~~~~~tssP~v~~g~Vivg~~~~~-~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 129 ----DARLVALDAKTGKVVWSKKNG--DYKAGYTITAAPLVVKGKVITGISGGE-FGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred ----CCEEEEEECCCCCEEeecccc--cccccccccCCcEEECCEEEEeecccc-cCCCcEEEEEECCCCceeEecc
Confidence 2368999998875 775431 11111 112223455777766432111 112356889998876 46543
No 104
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=88.23 E-value=20 Score=34.95 Aligned_cols=156 Identities=17% Similarity=0.120 Sum_probs=91.7
Q ss_pred EEE-ECCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCCCC
Q 008611 191 AAV-VQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPS 269 (559)
Q Consensus 191 ~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~ 269 (559)
... .++.||.--|..+. +.+..||+.|++-...... |..-++=+++.++++||..- -
T Consensus 50 L~~~~~g~LyESTG~yG~---S~l~~~d~~tg~~~~~~~l-------------~~~~FgEGit~~~d~l~qLT------W 107 (264)
T PF05096_consen 50 LEFLDDGTLYESTGLYGQ---SSLRKVDLETGKVLQSVPL-------------PPRYFGEGITILGDKLYQLT------W 107 (264)
T ss_dssp EEEEETTEEEEEECSTTE---EEEEEEETTTSSEEEEEE--------------TTT--EEEEEEETTEEEEEE------S
T ss_pred EEecCCCEEEEeCCCCCc---EEEEEEECCCCcEEEEEEC-------------CccccceeEEEECCEEEEEE------e
Confidence 444 57899998886553 6788999999987655443 56778889999999999984 2
Q ss_pred CcceEEEEECCCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCCceEE-ecCCCCCCCcc
Q 008611 270 EIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDE-IDAVGVPPSPR 348 (559)
Q Consensus 270 ~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~p~~r 348 (559)
....+++||..+.+ .+. ..+.+..+-++|..+..||+.-| ++.++.+||.+.+=.. +... .
T Consensus 108 k~~~~f~yd~~tl~--~~~---~~~y~~EGWGLt~dg~~Li~SDG-------S~~L~~~dP~~f~~~~~i~V~------~ 169 (264)
T PF05096_consen 108 KEGTGFVYDPNTLK--KIG---TFPYPGEGWGLTSDGKRLIMSDG-------SSRLYFLDPETFKEVRTIQVT------D 169 (264)
T ss_dssp SSSEEEEEETTTTE--EEE---EEE-SSS--EEEECSSCEEEE-S-------SSEEEEE-TTT-SEEEEEE-E------E
T ss_pred cCCeEEEEccccce--EEE---EEecCCcceEEEcCCCEEEEECC-------ccceEEECCcccceEEEEEEE------E
Confidence 34578999998754 332 12334578888888889999877 4679999998754322 2111 0
Q ss_pred cccEEEEEcCCEEEEEcCCC--CCCCcCceEEEECCCCeeEe
Q 008611 349 SDHAAAVHAERYLLIFGGGS--HAACFNDLHVLDLQTMEWSR 388 (559)
Q Consensus 349 ~~~~~~~~~~~~l~v~GG~~--~~~~~~dv~~~d~~~~~W~~ 388 (559)
.+..+..+ | .|=.++|.- +-=..+.|.+.|+.++.-..
T Consensus 170 ~g~pv~~L-N-ELE~i~G~IyANVW~td~I~~Idp~tG~V~~ 209 (264)
T PF05096_consen 170 NGRPVSNL-N-ELEYINGKIYANVWQTDRIVRIDPETGKVVG 209 (264)
T ss_dssp TTEE---E-E-EEEEETTEEEEEETTSSEEEEEETTT-BEEE
T ss_pred CCEECCCc-E-eEEEEcCEEEEEeCCCCeEEEEeCCCCeEEE
Confidence 11111111 1 133334411 11124679999999986443
No 105
>PRK13684 Ycf48-like protein; Provisional
Probab=87.87 E-value=34 Score=34.86 Aligned_cols=171 Identities=11% Similarity=0.121 Sum_probs=83.4
Q ss_pred eEEecccCCCCCCc-ccceeEEEECCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccce
Q 008611 172 QWIAPPISGQRPKA-RYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHS 250 (559)
Q Consensus 172 ~W~~~~~~g~~p~~-r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~ 250 (559)
+|+..... .|.. ....++...++..|+.|.. .-+++=+-.-.+|+.+.... ..|. ..+.
T Consensus 77 tW~~~~~~--~~~~~~~l~~v~~~~~~~~~~G~~------g~i~~S~DgG~tW~~~~~~~----------~~~~--~~~~ 136 (334)
T PRK13684 77 TWEERSLD--LPEENFRLISISFKGDEGWIVGQP------SLLLHTTDGGKNWTRIPLSE----------KLPG--SPYL 136 (334)
T ss_pred CceECccC--CcccccceeeeEEcCCcEEEeCCC------ceEEEECCCCCCCeEccCCc----------CCCC--CceE
Confidence 89987642 2222 2223344446667776531 12333222345899885321 0111 1222
Q ss_pred eEEe-CCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEE-
Q 008611 251 LIPW-ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHIL- 328 (559)
Q Consensus 251 ~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~y- 328 (559)
...+ ++.+|+.|.. ..+++-+-.-.+|+.+.. +..-..+.+....+..|+..|..+ .++.-
T Consensus 137 i~~~~~~~~~~~g~~-------G~i~~S~DgG~tW~~~~~----~~~g~~~~i~~~~~g~~v~~g~~G------~i~~s~ 199 (334)
T PRK13684 137 ITALGPGTAEMATNV-------GAIYRTTDGGKNWEALVE----DAAGVVRNLRRSPDGKYVAVSSRG------NFYSTW 199 (334)
T ss_pred EEEECCCcceeeecc-------ceEEEECCCCCCceeCcC----CCcceEEEEEECCCCeEEEEeCCc------eEEEEc
Confidence 3333 3456655532 234444445568998863 222233444444443344433222 23332
Q ss_pred ECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEE-C-CCCeeEecc
Q 008611 329 DLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLD-L-QTMEWSRPT 390 (559)
Q Consensus 329 d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d-~-~~~~W~~~~ 390 (559)
|....+|+.+.. +..+.-++++...++.++++|... ..++. . .-.+|+.+.
T Consensus 200 ~~gg~tW~~~~~----~~~~~l~~i~~~~~g~~~~vg~~G-------~~~~~s~d~G~sW~~~~ 252 (334)
T PRK13684 200 EPGQTAWTPHQR----NSSRRLQSMGFQPDGNLWMLARGG-------QIRFNDPDDLESWSKPI 252 (334)
T ss_pred CCCCCeEEEeeC----CCcccceeeeEcCCCCEEEEecCC-------EEEEccCCCCCcccccc
Confidence 444567998853 344555666666667788887532 23342 2 335898763
No 106
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=87.60 E-value=24 Score=32.77 Aligned_cols=112 Identities=13% Similarity=0.152 Sum_probs=55.8
Q ss_pred eEEeCCEEEEEeccCCCCCCcceEEEEECCCCe--EEEeccC-CCCCCCccceEEEEEC-CEEEEEcCcCCCCCCcCceE
Q 008611 251 LIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCS--WSTLKTY-GKPPVSRGGQSVTLVG-TSLVIFGGEDAKRSLLNDLH 326 (559)
Q Consensus 251 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~-g~~p~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~~~ 326 (559)
++...+.+|+|-|. .+|+|+..... -..+... ..+|. ....+..... +++|+|=|. ..|
T Consensus 12 ~~~~~g~~y~FkG~--------~~w~~~~~~~~~~p~~I~~~w~~~p~-~IDAa~~~~~~~~~yfFkg~--------~yw 74 (194)
T cd00094 12 VTTLRGELYFFKGR--------YFWRLSPGKPPGSPFLISSFWPSLPS-PVDAAFERPDTGKIYFFKGD--------KYW 74 (194)
T ss_pred EEEeCCEEEEEeCC--------EEEEEeCCCCCCCCeEhhhhCCCCCC-CccEEEEECCCCEEEEECCC--------EEE
Confidence 34456899999764 46777765211 1222211 01222 1222222223 789999663 477
Q ss_pred EEECCCCceEE---ecCCCCCCCcccccEEEEEc-CCEEEEEcCCCCCCCcCceEEEECCCCee
Q 008611 327 ILDLETMTWDE---IDAVGVPPSPRSDHAAAVHA-ERYLLIFGGGSHAACFNDLHVLDLQTMEW 386 (559)
Q Consensus 327 ~yd~~t~~W~~---~~~~~~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~dv~~~d~~~~~W 386 (559)
+|+..+..+.- +...+-++.+..--++.... ++++|+|-|. ..|+||..+++.
T Consensus 75 ~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~-------~y~ry~~~~~~v 131 (194)
T cd00094 75 VYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGD-------KYWRYDEKTQKM 131 (194)
T ss_pred EEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCC-------EEEEEeCCCccc
Confidence 88765422211 11111111111112233333 5789999884 488999766543
No 107
>PF14282 FlxA: FlxA-like protein
Probab=87.22 E-value=1.1 Score=37.31 Aligned_cols=44 Identities=18% Similarity=0.254 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHH----HHHHHHHHhhhHHHHHHHHHhhhhhHh
Q 008611 512 TEHLIATLKAEKEELES----SLSKEKLQSIQLKQDLTEAESQNTDLY 555 (559)
Q Consensus 512 ~~~~~~~l~~e~~~~~~----~l~~~~~~~~~l~~~~~~~~~~~~~~~ 555 (559)
++..|..|++++.++.. .-+..+++.+.|+.+|..++.+|+.+.
T Consensus 24 L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq 71 (106)
T PF14282_consen 24 LQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQ 71 (106)
T ss_pred HHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444443 122333444445555555555554443
No 108
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=86.97 E-value=51 Score=35.95 Aligned_cols=123 Identities=15% Similarity=0.112 Sum_probs=64.5
Q ss_pred eeEEeCCEEEEEeccCCCCCCcceEEEEECCCCe--EEEeccCC-CC-C---CCccceEEEEECCEEEEEcCcCCCCCCc
Q 008611 250 SLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCS--WSTLKTYG-KP-P---VSRGGQSVTLVGTSLVIFGGEDAKRSLL 322 (559)
Q Consensus 250 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~g-~~-p---~~r~~~~~~~~~~~lyv~GG~~~~~~~~ 322 (559)
+-++.++.||+.... ..++.+|..+++ |+.-.... .. + ......+.++.+++||+... -
T Consensus 64 tPvv~~g~vyv~s~~-------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~-------d 129 (527)
T TIGR03075 64 QPLVVDGVMYVTTSY-------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL-------D 129 (527)
T ss_pred CCEEECCEEEEECCC-------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC-------C
Confidence 345568899985432 358999988864 87643110 00 1 00112234556778776332 2
Q ss_pred CceEEEECCCC--ceEEecCCCCCCCc-ccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCC--eeEec
Q 008611 323 NDLHILDLETM--TWDEIDAVGVPPSP-RSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTM--EWSRP 389 (559)
Q Consensus 323 ~~~~~yd~~t~--~W~~~~~~~~~p~~-r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~--~W~~~ 389 (559)
..++++|..|. .|+.-.. ..... ....+.+++ ++.||+............|+.||..+. .|..-
T Consensus 130 g~l~ALDa~TGk~~W~~~~~--~~~~~~~~tssP~v~-~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 130 ARLVALDAKTGKVVWSKKNG--DYKAGYTITAAPLVV-KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred CEEEEEECCCCCEEeecccc--cccccccccCCcEEE-CCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 35899999776 4764321 11111 111223333 564555322211222356899999886 47653
No 109
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=86.77 E-value=32 Score=33.43 Aligned_cols=161 Identities=17% Similarity=0.171 Sum_probs=95.6
Q ss_pred CCCcccceeEEEECCEEEEEccCCCCcccCcEEEEEcCCCeEE---EeeeccccCCCCCCCCCCCCCCccce---eEEeC
Q 008611 182 RPKARYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWS---KIQAKAVAESTESPSPALLTPCAGHS---LIPWE 255 (559)
Q Consensus 182 ~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~---~~~~~~~~~~~~~~~~~~p~~r~~~~---~~~~~ 255 (559)
+|.+-.|.+.++.++.||.--. .++.+.+||+.+..-. .++..... ...|....+++ .++-+
T Consensus 65 Lp~~~~GtG~vVYngslYY~~~-----~s~~IvkydL~t~~v~~~~~L~~A~~~-------n~~~y~~~~~t~iD~AvDE 132 (250)
T PF02191_consen 65 LPYPWQGTGHVVYNGSLYYNKY-----NSRNIVKYDLTTRSVVARRELPGAGYN-------NRFPYYWSGYTDIDFAVDE 132 (250)
T ss_pred EeceeccCCeEEECCcEEEEec-----CCceEEEEECcCCcEEEEEECCccccc-------cccceecCCCceEEEEEcC
Confidence 5566677777888888887643 4678999999998655 33222110 11223333333 33346
Q ss_pred CEEEEEeccCCCCCCcceEEEEECCCCe----EEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECC
Q 008611 256 NKLLSIAGHTKDPSEIIQVKVFDLQTCS----WSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLE 331 (559)
Q Consensus 256 ~~lyv~GG~~~~~~~~~~v~~yd~~t~~----W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~ 331 (559)
+-|+|+-..... ...-.+..+|+.+.. |..- .+.+..+. +..+.+.||++-..+... ..-.+.||+.
T Consensus 133 ~GLWvIYat~~~-~g~ivvskld~~tL~v~~tw~T~-----~~k~~~~n-aFmvCGvLY~~~s~~~~~--~~I~yafDt~ 203 (250)
T PF02191_consen 133 NGLWVIYATEDN-NGNIVVSKLDPETLSVEQTWNTS-----YPKRSAGN-AFMVCGVLYATDSYDTRD--TEIFYAFDTY 203 (250)
T ss_pred CCEEEEEecCCC-CCcEEEEeeCcccCceEEEEEec-----cCchhhcc-eeeEeeEEEEEEECCCCC--cEEEEEEECC
Confidence 778888665543 223456677887654 5532 33333333 455668899887765443 3446899999
Q ss_pred CCceEEecCCCCCCCcccccEEEEEc--CCEEEEEc
Q 008611 332 TMTWDEIDAVGVPPSPRSDHAAAVHA--ERYLLIFG 365 (559)
Q Consensus 332 t~~W~~~~~~~~~p~~r~~~~~~~~~--~~~l~v~G 365 (559)
+++=..+... .+.+-..++++-++ ++.||++-
T Consensus 204 t~~~~~~~i~--f~~~~~~~~~l~YNP~dk~LY~wd 237 (250)
T PF02191_consen 204 TGKEEDVSIP--FPNPYGNISMLSYNPRDKKLYAWD 237 (250)
T ss_pred CCceeceeee--eccccCceEeeeECCCCCeEEEEE
Confidence 8876655422 33444455666664 56788874
No 110
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=86.00 E-value=35 Score=33.15 Aligned_cols=185 Identities=16% Similarity=0.112 Sum_probs=95.1
Q ss_pred CCEEEEEccCCCCcccCcEEEEEc-----CCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCCCC
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDL-----RSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPS 269 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~-----~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~ 269 (559)
++++|++.|..+. .++.|.. ..+.....- ..|.+-.|.+.++.+|.+|.--.
T Consensus 30 ~~~iy~~~~~~~~----~v~ey~~~~~f~~~~~~~~~~-------------~Lp~~~~GtG~vVYngslYY~~~------ 86 (250)
T PF02191_consen 30 SEKIYVTSGFSGN----TVYEYRNYEDFLRNGRSSRTY-------------KLPYPWQGTGHVVYNGSLYYNKY------ 86 (250)
T ss_pred CCCEEEECccCCC----EEEEEcCHhHHhhcCCCceEE-------------EEeceeccCCeEEECCcEEEEec------
Confidence 5789999885543 4555532 122222211 23456667778889999988654
Q ss_pred CcceEEEEECCCCeEE---EeccCCC---CCCCccc---eEEEEECCEEEEEcCcCCCCCCcCceEEEECCCCceEEecC
Q 008611 270 EIIQVKVFDLQTCSWS---TLKTYGK---PPVSRGG---QSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDA 340 (559)
Q Consensus 270 ~~~~v~~yd~~t~~W~---~~~~~g~---~p~~r~~---~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~ 340 (559)
..+.|.+||+.+..-. .++..+- .|-...+ .-.++-.+-|+|+-....+.. .-.|-.+|+.+..-+..-.
T Consensus 87 ~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g-~ivvskld~~tL~v~~tw~ 165 (250)
T PF02191_consen 87 NSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNG-NIVVSKLDPETLSVEQTWN 165 (250)
T ss_pred CCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCC-cEEEEeeCcccCceEEEEE
Confidence 3578999999998644 4432211 1211122 223333455777654433221 1235566776543322211
Q ss_pred CCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEeccCCCCCCCCccccEEEEECC
Q 008611 341 VGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGE 409 (559)
Q Consensus 341 ~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~~~~~~~p~~R~~hs~~~~~~ 409 (559)
. ..+.+..+.+. ++. +.||++....... ..=.+.||+.+++=..+.. ..+.+-..++++..+.
T Consensus 166 T-~~~k~~~~naF-mvC-GvLY~~~s~~~~~-~~I~yafDt~t~~~~~~~i--~f~~~~~~~~~l~YNP 228 (250)
T PF02191_consen 166 T-SYPKRSAGNAF-MVC-GVLYATDSYDTRD-TEIFYAFDTYTGKEEDVSI--PFPNPYGNISMLSYNP 228 (250)
T ss_pred e-ccCchhhccee-eEe-eEEEEEEECCCCC-cEEEEEEECCCCceeceee--eeccccCceEeeeECC
Confidence 1 12343433332 333 4588887644332 3345899998876655421 2333334555555543
No 111
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=85.65 E-value=50 Score=34.56 Aligned_cols=183 Identities=12% Similarity=0.115 Sum_probs=85.5
Q ss_pred eEEecccCCCCCCcccceeEEEEC-CEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCC----CC-CCCCCCCC
Q 008611 172 QWIAPPISGQRPKARYEHGAAVVQ-DKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAEST----ES-PSPALLTP 245 (559)
Q Consensus 172 ~W~~~~~~g~~p~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~----~~-~~~~~p~~ 245 (559)
+|+.++....+|.. .+....++ +.++++|.. ..+++-+-...+|+.+......... .+ .....+..
T Consensus 167 tW~~~~~~~~~p~~--~~~i~~~~~~~~~ivg~~------G~v~~S~D~G~tW~~~~~~t~~~~l~~~~~s~~~g~~~y~ 238 (398)
T PLN00033 167 TWERIPLSPKLPGE--PVLIKATGPKSAEMVTDE------GAIYVTSNAGRNWKAAVEETVSATLNRTVSSGISGASYYT 238 (398)
T ss_pred CceECccccCCCCC--ceEEEEECCCceEEEecc------ceEEEECCCCCCceEcccccccccccccccccccccceec
Confidence 99988752223333 23334444 568888742 2355555556789876321100000 00 00000111
Q ss_pred CccceeEEe-CCEEEEEeccCCCCCCcceEEEE-ECCCCeEEEeccCCCCCCCccceEEEE-ECCEEEEEcCcCCCCCCc
Q 008611 246 CAGHSLIPW-ENKLLSIAGHTKDPSEIIQVKVF-DLQTCSWSTLKTYGKPPVSRGGQSVTL-VGTSLVIFGGEDAKRSLL 322 (559)
Q Consensus 246 r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~y-d~~t~~W~~~~~~g~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~ 322 (559)
-..+++... ++.++++|-.. .+++- |.-...|+.+. .|.++.-.+++. .++.+++.|..
T Consensus 239 Gsf~~v~~~~dG~~~~vg~~G-------~~~~s~d~G~~~W~~~~----~~~~~~l~~v~~~~dg~l~l~g~~------- 300 (398)
T PLN00033 239 GTFSTVNRSPDGDYVAVSSRG-------NFYLTWEPGQPYWQPHN----RASARRIQNMGWRADGGLWLLTRG------- 300 (398)
T ss_pred cceeeEEEcCCCCEEEEECCc-------cEEEecCCCCcceEEec----CCCccceeeeeEcCCCCEEEEeCC-------
Confidence 112222222 45566665432 13332 22223489885 344444444433 35688887743
Q ss_pred CceEEEECCCC-----ceEEecCCCCCCCccc-ccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEecc
Q 008611 323 NDLHILDLETM-----TWDEIDAVGVPPSPRS-DHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (559)
Q Consensus 323 ~~~~~yd~~t~-----~W~~~~~~~~~p~~r~-~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~~ 390 (559)
..++.-+.... .|..+.. +..+. -..+....++.++++|... -++.-.....+|+...
T Consensus 301 G~l~~S~d~G~~~~~~~f~~~~~----~~~~~~l~~v~~~~d~~~~a~G~~G------~v~~s~D~G~tW~~~~ 364 (398)
T PLN00033 301 GGLYVSKGTGLTEEDFDFEEADI----KSRGFGILDVGYRSKKEAWAAGGSG------ILLRSTDGGKSWKRDK 364 (398)
T ss_pred ceEEEecCCCCcccccceeeccc----CCCCcceEEEEEcCCCcEEEEECCC------cEEEeCCCCcceeEcc
Confidence 12333333333 3444432 22222 2334455567799998743 2445455567899875
No 112
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=85.62 E-value=11 Score=39.34 Aligned_cols=112 Identities=18% Similarity=0.270 Sum_probs=61.2
Q ss_pred EeCCEEEEEeccCCCCCCcceEEEEECCCCeE-EEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECC
Q 008611 253 PWENKLLSIAGHTKDPSEIIQVKVFDLQTCSW-STLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLE 331 (559)
Q Consensus 253 ~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W-~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~ 331 (559)
..+|+|+.+|+..+. +.+||..+..- ..+... ..|.-+.. .+..++.++++|+-+.- +-.+|++
T Consensus 77 R~DG~LlaaGD~sG~------V~vfD~k~r~iLR~~~ah-~apv~~~~--f~~~d~t~l~s~sDd~v------~k~~d~s 141 (487)
T KOG0310|consen 77 RSDGRLLAAGDESGH------VKVFDMKSRVILRQLYAH-QAPVHVTK--FSPQDNTMLVSGSDDKV------VKYWDLS 141 (487)
T ss_pred ecCCeEEEccCCcCc------EEEeccccHHHHHHHhhc-cCceeEEE--ecccCCeEEEecCCCce------EEEEEcC
Confidence 348999999988665 88899555211 001000 11221111 23457899999975432 3445666
Q ss_pred CCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCC-eeE
Q 008611 332 TMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTM-EWS 387 (559)
Q Consensus 332 t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~-~W~ 387 (559)
+..- .....+..-.-|++. +.-.+++|++-||+++ .+-.||+... .|.
T Consensus 142 ~a~v-~~~l~~htDYVR~g~--~~~~~~hivvtGsYDg-----~vrl~DtR~~~~~v 190 (487)
T KOG0310|consen 142 TAYV-QAELSGHTDYVRCGD--ISPANDHIVVTGSYDG-----KVRLWDTRSLTSRV 190 (487)
T ss_pred CcEE-EEEecCCcceeEeec--cccCCCeEEEecCCCc-----eEEEEEeccCCcee
Confidence 5553 333333333444332 2223567999999874 4566777655 443
No 113
>PRK00178 tolB translocation protein TolB; Provisional
Probab=85.34 E-value=53 Score=34.59 Aligned_cols=104 Identities=13% Similarity=0.119 Sum_probs=57.0
Q ss_pred cceEEEEECCCCeEEEeccCCCCCCCccceEEEEECC-EEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCccc
Q 008611 271 IIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGT-SLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRS 349 (559)
Q Consensus 271 ~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~ 349 (559)
...++++|+.+++-..+... +. ........-++ +|++....++ ..++|++|+.+.....+... + ..
T Consensus 222 ~~~l~~~~l~~g~~~~l~~~---~g-~~~~~~~SpDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~~---~--~~ 288 (430)
T PRK00178 222 RPRIFVQNLDTGRREQITNF---EG-LNGAPAWSPDGSKLAFVLSKDG----NPEIYVMDLASRQLSRVTNH---P--AI 288 (430)
T ss_pred CCEEEEEECCCCCEEEccCC---CC-CcCCeEECCCCCEEEEEEccCC----CceEEEEECCCCCeEEcccC---C--CC
Confidence 35799999999887776521 11 11111111233 5554332222 25799999999988877532 1 11
Q ss_pred ccEEEEEcC-CEEEEEcCCCCCCCcCceEEEECCCCeeEecc
Q 008611 350 DHAAAVHAE-RYLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (559)
Q Consensus 350 ~~~~~~~~~-~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~~ 390 (559)
........+ +.|++..... -...+|.+|+.+..+..+.
T Consensus 289 ~~~~~~spDg~~i~f~s~~~---g~~~iy~~d~~~g~~~~lt 327 (430)
T PRK00178 289 DTEPFWGKDGRTLYFTSDRG---GKPQIYKVNVNGGRAERVT 327 (430)
T ss_pred cCCeEECCCCCEEEEEECCC---CCceEEEEECCCCCEEEee
Confidence 122233334 4454442211 1247999999888887764
No 114
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=85.32 E-value=38 Score=32.90 Aligned_cols=147 Identities=17% Similarity=0.173 Sum_probs=69.9
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe-C-CEEEEEeccCCCCCCcc
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-E-NKLLSIAGHTKDPSEII 272 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~-~~lyv~GG~~~~~~~~~ 272 (559)
+..+|+.++. .+.+.+||+.+++....-... ..+ ..++.. + +.+|+.++.+ .
T Consensus 42 g~~l~~~~~~-----~~~v~~~d~~~~~~~~~~~~~------------~~~---~~~~~~~~g~~l~~~~~~~------~ 95 (300)
T TIGR03866 42 GKLLYVCASD-----SDTIQVIDLATGEVIGTLPSG------------PDP---ELFALHPNGKILYIANEDD------N 95 (300)
T ss_pred CCEEEEEECC-----CCeEEEEECCCCcEEEeccCC------------CCc---cEEEECCCCCEEEEEcCCC------C
Confidence 3457777652 246889999887664321110 111 122222 3 3566654422 3
Q ss_pred eEEEEECCCCeEEEeccCCCCCCCccceEEEE-ECCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCccccc
Q 008611 273 QVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTL-VGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDH 351 (559)
Q Consensus 273 ~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~ 351 (559)
.+..||+.+.+-...- +......+++. -++.+++++..+. +.++.||..+..-......+.. + .
T Consensus 96 ~l~~~d~~~~~~~~~~-----~~~~~~~~~~~~~dg~~l~~~~~~~-----~~~~~~d~~~~~~~~~~~~~~~--~---~ 160 (300)
T TIGR03866 96 LVTVIDIETRKVLAEI-----PVGVEPEGMAVSPDGKIVVNTSETT-----NMAHFIDTKTYEIVDNVLVDQR--P---R 160 (300)
T ss_pred eEEEEECCCCeEEeEe-----eCCCCcceEEECCCCCEEEEEecCC-----CeEEEEeCCCCeEEEEEEcCCC--c---c
Confidence 6889999876432211 11111122332 2556666654322 2356678766543221111111 1 2
Q ss_pred EEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCee
Q 008611 352 AAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEW 386 (559)
Q Consensus 352 ~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W 386 (559)
++++..++..+++++... +.+.+||+.+.+.
T Consensus 161 ~~~~s~dg~~l~~~~~~~----~~v~i~d~~~~~~ 191 (300)
T TIGR03866 161 FAEFTADGKELWVSSEIG----GTVSVIDVATRKV 191 (300)
T ss_pred EEEECCCCCEEEEEcCCC----CEEEEEEcCccee
Confidence 233333444444444321 3588999987643
No 115
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=84.80 E-value=1.7 Score=43.85 Aligned_cols=47 Identities=30% Similarity=0.362 Sum_probs=27.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhh
Q 008611 510 ETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYK 556 (559)
Q Consensus 510 ~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~k 556 (559)
...+..++.+++|.+++.+.|++.+.+.+++.+++.+++.+.+++++
T Consensus 46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~ 92 (314)
T PF04111_consen 46 EELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDE 92 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666666666666666666666666666665555543
No 116
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=83.90 E-value=51 Score=33.20 Aligned_cols=157 Identities=11% Similarity=0.015 Sum_probs=69.8
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcC-CCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCC-EEEEEeccCCCCCCcc
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLR-SWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWEN-KLLSIAGHTKDPSEII 272 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~-t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~ 272 (559)
++.||+.+. . .+.+..|++. ++.+..+.... .+ ....|.+..-++ .||+. .+. .+
T Consensus 46 ~~~lyv~~~-~----~~~i~~~~~~~~g~l~~~~~~~-----------~~-~~p~~i~~~~~g~~l~v~-~~~-----~~ 102 (330)
T PRK11028 46 KRHLYVGVR-P----EFRVLSYRIADDGALTFAAESP-----------LP-GSPTHISTDHQGRFLFSA-SYN-----AN 102 (330)
T ss_pred CCEEEEEEC-C----CCcEEEEEECCCCceEEeeeec-----------CC-CCceEEEECCCCCEEEEE-EcC-----CC
Confidence 455777543 1 2567777775 45666553321 01 111222222245 45554 332 24
Q ss_pred eEEEEECCCCe--EEEeccCCCCCCCccceEEEEE-C-CEEEEEcCcCCCCCCcCceEEEECCCCc-eEEecC-CCCCCC
Q 008611 273 QVKVFDLQTCS--WSTLKTYGKPPVSRGGQSVTLV-G-TSLVIFGGEDAKRSLLNDLHILDLETMT-WDEIDA-VGVPPS 346 (559)
Q Consensus 273 ~v~~yd~~t~~--W~~~~~~g~~p~~r~~~~~~~~-~-~~lyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~~~-~~~~p~ 346 (559)
.+.+||+.++. ...+.. .+.....|.++.. + ..+|+..- ..+.+.+||+.+.. ...... ....+.
T Consensus 103 ~v~v~~~~~~g~~~~~~~~---~~~~~~~~~~~~~p~g~~l~v~~~------~~~~v~v~d~~~~g~l~~~~~~~~~~~~ 173 (330)
T PRK11028 103 CVSVSPLDKDGIPVAPIQI---IEGLEGCHSANIDPDNRTLWVPCL------KEDRIRLFTLSDDGHLVAQEPAEVTTVE 173 (330)
T ss_pred eEEEEEECCCCCCCCceee---ccCCCcccEeEeCCCCCEEEEeeC------CCCEEEEEEECCCCcccccCCCceecCC
Confidence 67778775431 112211 1111223444333 3 35666442 13568999987632 211000 000111
Q ss_pred cccccEEEEEcC-CEEEEEcCCCCCCCcCceEEEECC--CCeeEe
Q 008611 347 PRSDHAAAVHAE-RYLLIFGGGSHAACFNDLHVLDLQ--TMEWSR 388 (559)
Q Consensus 347 ~r~~~~~~~~~~-~~l~v~GG~~~~~~~~dv~~~d~~--~~~W~~ 388 (559)
+..-+.+++..+ .++|+.... .+.+.+||+. +.+.+.
T Consensus 174 g~~p~~~~~~pdg~~lyv~~~~-----~~~v~v~~~~~~~~~~~~ 213 (330)
T PRK11028 174 GAGPRHMVFHPNQQYAYCVNEL-----NSSVDVWQLKDPHGEIEC 213 (330)
T ss_pred CCCCceEEECCCCCEEEEEecC-----CCEEEEEEEeCCCCCEEE
Confidence 111223444443 567776432 3567777775 345444
No 117
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=83.76 E-value=2.9 Score=34.72 Aligned_cols=48 Identities=19% Similarity=0.216 Sum_probs=37.4
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhh
Q 008611 509 PETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYK 556 (559)
Q Consensus 509 ~~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~k 556 (559)
+...++.+..+..++++++.++.+..+++..|+-+.+.+..++.++++
T Consensus 10 l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 10 LDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456667788888888888888888888888888888888888766654
No 118
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=83.68 E-value=3.6 Score=37.31 Aligned_cols=47 Identities=28% Similarity=0.359 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHhhhhhHhhhh
Q 008611 512 TEHLIATLKAEKEELESSLSKEKLQ---SIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 512 ~~~~~~~l~~e~~~~~~~l~~~~~~---~~~l~~~~~~~~~~~~~~~kel 558 (559)
+++.+.+++.|-++++...+....+ ++.|++|+.++|+++..+.|||
T Consensus 47 k~eel~~~~~eEe~LKs~~q~K~~~aanL~~lr~Ql~emee~~~~llrQL 96 (211)
T COG3167 47 KLEELEELEAEEEELKSTYQQKAIQAANLEALRAQLAEMEERFDILLRQL 96 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhC
Confidence 3445566666666666665555544 5567888888888888888876
No 119
>PRK10884 SH3 domain-containing protein; Provisional
Probab=83.15 E-value=2.7 Score=39.44 Aligned_cols=42 Identities=21% Similarity=0.114 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhh
Q 008611 515 LIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYK 556 (559)
Q Consensus 515 ~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~k 556 (559)
.+++..++..+++++.++.++++++++.++++++.+++++.+
T Consensus 126 ~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 126 KVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444445555555555555555555544443
No 120
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.07 E-value=5.3 Score=29.65 Aligned_cols=16 Identities=38% Similarity=0.422 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 008611 516 IATLKAEKEELESSLS 531 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~ 531 (559)
|+-|+-|.++++++.+
T Consensus 20 I~LLQmEieELKEknn 35 (79)
T COG3074 20 ITLLQMEIEELKEKNN 35 (79)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3334444444433333
No 121
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=82.91 E-value=65 Score=33.69 Aligned_cols=215 Identities=16% Similarity=0.085 Sum_probs=105.2
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe--CCEEEEEeccCCCC----
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHTKDP---- 268 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~---- 268 (559)
+++.++++=..+|.-...++++|+.+++...-. .....++.+.+ ++..+++.......
T Consensus 134 dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~----------------i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~ 197 (414)
T PF02897_consen 134 DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG----------------IENPKFSSVSWSDDGKGFFYTRFDEDQRTSD 197 (414)
T ss_dssp TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE----------------EEEEESEEEEECTTSSEEEEEECSTTTSS-C
T ss_pred CCCEEEEEecCCCCceEEEEEEECCCCcCcCCc----------------ccccccceEEEeCCCCEEEEEEeCccccccc
Confidence 566666654444555667999999999554321 11222222333 44555555444331
Q ss_pred -CCcceEEEEECCCCeEEEeccCCCCCCCcc-ceEEEEE-CCE-EEEEcCcCCCCCCcCceEEEECCCC-----ceEEec
Q 008611 269 -SEIIQVKVFDLQTCSWSTLKTYGKPPVSRG-GQSVTLV-GTS-LVIFGGEDAKRSLLNDLHILDLETM-----TWDEID 339 (559)
Q Consensus 269 -~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~-~~~~~~~-~~~-lyv~GG~~~~~~~~~~~~~yd~~t~-----~W~~~~ 339 (559)
.....++++.+.+..-.-.... ..+.... ...+... +++ |+|.-..... .+++|.+++... .|..+.
T Consensus 198 ~~~~~~v~~~~~gt~~~~d~lvf-e~~~~~~~~~~~~~s~d~~~l~i~~~~~~~---~s~v~~~d~~~~~~~~~~~~~l~ 273 (414)
T PF02897_consen 198 SGYPRQVYRHKLGTPQSEDELVF-EEPDEPFWFVSVSRSKDGRYLFISSSSGTS---ESEVYLLDLDDGGSPDAKPKLLS 273 (414)
T ss_dssp CGCCEEEEEEETTS-GGG-EEEE-C-TTCTTSEEEEEE-TTSSEEEEEEESSSS---EEEEEEEECCCTTTSS-SEEEEE
T ss_pred CCCCcEEEEEECCCChHhCeeEE-eecCCCcEEEEEEecCcccEEEEEEEcccc---CCeEEEEeccccCCCcCCcEEEe
Confidence 2367899999887764411111 1122222 2223222 333 4433332211 378999999875 888885
Q ss_pred CCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCe---eEeccCCCCCCCCc-cccEEEEECCceecce
Q 008611 340 AVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTME---WSRPTQQGEIPTPR-AGHAGVTIGENWFLGL 415 (559)
Q Consensus 340 ~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~---W~~~~~~~~~p~~R-~~hs~~~~~~~~~iG~ 415 (559)
.. ..-. ...+-+.++.+||.-. .+.....|..+++.+.. |..+-. .+... .--.+.+.
T Consensus 274 ~~----~~~~-~~~v~~~~~~~yi~Tn--~~a~~~~l~~~~l~~~~~~~~~~~l~---~~~~~~~l~~~~~~-------- 335 (414)
T PF02897_consen 274 PR----EDGV-EYYVDHHGDRLYILTN--DDAPNGRLVAVDLADPSPAEWWTVLI---PEDEDVSLEDVSLF-------- 335 (414)
T ss_dssp ES----SSS--EEEEEEETTEEEEEE---TT-TT-EEEEEETTSTSGGGEEEEEE-----SSSEEEEEEEEE--------
T ss_pred CC----CCce-EEEEEccCCEEEEeeC--CCCCCcEEEEecccccccccceeEEc---CCCCceeEEEEEEE--------
Confidence 32 2212 2223333666887754 23334578889987764 663211 11111 11222222
Q ss_pred eeeeeccCCCcEEEEEcCcCCCCcccEEEEeCC-CcceecccCC
Q 008611 416 SLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPS-HKSTLSSKMI 458 (559)
Q Consensus 416 s~~~~~~~~~~~l~v~GG~~~~~~~~v~~~d~~-~~~~~~~~~~ 458 (559)
+++|++.-=.+ ....+.++++. +......+++
T Consensus 336 ---------~~~Lvl~~~~~--~~~~l~v~~~~~~~~~~~~~~p 368 (414)
T PF02897_consen 336 ---------KDYLVLSYREN--GSSRLRVYDLDDGKESREIPLP 368 (414)
T ss_dssp ---------TTEEEEEEEET--TEEEEEEEETT-TEEEEEEESS
T ss_pred ---------CCEEEEEEEEC--CccEEEEEECCCCcEEeeecCC
Confidence 23666553322 35688899988 4444444444
No 122
>PRK10884 SH3 domain-containing protein; Provisional
Probab=82.79 E-value=3 Score=39.12 Aligned_cols=41 Identities=17% Similarity=0.157 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhh
Q 008611 517 ATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKV 557 (559)
Q Consensus 517 ~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ke 557 (559)
+++++++++.+...++.++++++|++++++++++++.++.|
T Consensus 121 ~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~ 161 (206)
T PRK10884 121 AEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQ 161 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444444444433
No 123
>PRK05137 tolB translocation protein TolB; Provisional
Probab=82.76 E-value=69 Score=33.88 Aligned_cols=104 Identities=15% Similarity=0.144 Sum_probs=57.1
Q ss_pred ceEEEEECCCCeEEEeccCCCCCCCccceEEEEECC-EEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccc
Q 008611 272 IQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGT-SLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSD 350 (559)
Q Consensus 272 ~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~ 350 (559)
..++.+|+.+++...+.. .+....... ..-++ +|++....++ ..+||.+|+.+.....+... +. ..
T Consensus 226 ~~i~~~dl~~g~~~~l~~---~~g~~~~~~-~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~Lt~~---~~--~~ 292 (435)
T PRK05137 226 PRVYLLDLETGQRELVGN---FPGMTFAPR-FSPDGRKVVMSLSQGG----NTDIYTMDLRSGTTTRLTDS---PA--ID 292 (435)
T ss_pred CEEEEEECCCCcEEEeec---CCCcccCcE-ECCCCCEEEEEEecCC----CceEEEEECCCCceEEccCC---CC--cc
Confidence 689999999998877752 222111111 12234 5554433322 35799999998887776432 11 11
Q ss_pred cEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEecc
Q 008611 351 HAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (559)
Q Consensus 351 ~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~~ 390 (559)
.......++.-++|.....+ ..++|++|+.+.....+.
T Consensus 293 ~~~~~spDG~~i~f~s~~~g--~~~Iy~~d~~g~~~~~lt 330 (435)
T PRK05137 293 TSPSYSPDGSQIVFESDRSG--SPQLYVMNADGSNPRRIS 330 (435)
T ss_pred CceeEcCCCCEEEEEECCCC--CCeEEEEECCCCCeEEee
Confidence 12233334433344321111 247999999887777663
No 124
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=82.36 E-value=5.9 Score=29.13 Aligned_cols=39 Identities=28% Similarity=0.417 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 520 KAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 520 ~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
.+-++.++..|...+..+..++.++++.+.+..+|+.+|
T Consensus 10 irakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei 48 (61)
T PF08826_consen 10 IRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEI 48 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555566666666666666666666665555554
No 125
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=82.31 E-value=58 Score=32.75 Aligned_cols=146 Identities=13% Similarity=0.131 Sum_probs=69.6
Q ss_pred EEEEEccCCCCcccCcEEEEEcCC-CeEEEeeeccccCCCCCCCCCCCCCCccceeEEe-CC-EEEEEeccCCCCCCcce
Q 008611 197 KMYIYGGNHNGRYLSDMHILDLRS-WAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-EN-KLLSIAGHTKDPSEIIQ 273 (559)
Q Consensus 197 ~lyv~GG~~~~~~~~~v~~yd~~t-~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~ 273 (559)
++|+..+. .+.+.+||+.+ ++++.+.... .....+.++.- ++ .||+. +.. ...
T Consensus 3 ~~y~~~~~-----~~~I~~~~~~~~g~l~~~~~~~-------------~~~~~~~l~~spd~~~lyv~-~~~-----~~~ 58 (330)
T PRK11028 3 IVYIASPE-----SQQIHVWNLNHEGALTLLQVVD-------------VPGQVQPMVISPDKRHLYVG-VRP-----EFR 58 (330)
T ss_pred EEEEEcCC-----CCCEEEEEECCCCceeeeeEEe-------------cCCCCccEEECCCCCEEEEE-ECC-----CCc
Confidence 56777542 25688888864 5676664431 11111222222 34 56664 332 245
Q ss_pred EEEEECC-CCeEEEeccCCCCCCCccceEEEEE-CC-EEEEEcCcCCCCCCcCceEEEECCCCc--eEEecCCCCCCCcc
Q 008611 274 VKVFDLQ-TCSWSTLKTYGKPPVSRGGQSVTLV-GT-SLVIFGGEDAKRSLLNDLHILDLETMT--WDEIDAVGVPPSPR 348 (559)
Q Consensus 274 v~~yd~~-t~~W~~~~~~g~~p~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~p~~r 348 (559)
+..|++. ++.++.+.. .+.+..-+.++.. ++ .||+.. +. .+.+.+|++.++. ...+.. .+...
T Consensus 59 i~~~~~~~~g~l~~~~~---~~~~~~p~~i~~~~~g~~l~v~~-~~-----~~~v~v~~~~~~g~~~~~~~~---~~~~~ 126 (330)
T PRK11028 59 VLSYRIADDGALTFAAE---SPLPGSPTHISTDHQGRFLFSAS-YN-----ANCVSVSPLDKDGIPVAPIQI---IEGLE 126 (330)
T ss_pred EEEEEECCCCceEEeee---ecCCCCceEEEECCCCCEEEEEE-cC-----CCeEEEEEECCCCCCCCceee---ccCCC
Confidence 6667765 456665542 1111111122222 34 566653 21 2457788876431 112211 12222
Q ss_pred cccEEEEEcC-CEEEEEcCCCCCCCcCceEEEECCC
Q 008611 349 SDHAAAVHAE-RYLLIFGGGSHAACFNDLHVLDLQT 383 (559)
Q Consensus 349 ~~~~~~~~~~-~~l~v~GG~~~~~~~~dv~~~d~~~ 383 (559)
..|++++..+ +++|+..-. .+.|.+||+.+
T Consensus 127 ~~~~~~~~p~g~~l~v~~~~-----~~~v~v~d~~~ 157 (330)
T PRK11028 127 GCHSANIDPDNRTLWVPCLK-----EDRIRLFTLSD 157 (330)
T ss_pred cccEeEeCCCCCEEEEeeCC-----CCEEEEEEECC
Confidence 3455555544 456665422 24689999876
No 126
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=82.30 E-value=2.4 Score=34.70 Aligned_cols=47 Identities=15% Similarity=0.210 Sum_probs=29.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhh
Q 008611 511 TTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKV 557 (559)
Q Consensus 511 ~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ke 557 (559)
....-+.+|.+++.+++..++..+.+...+.+.+.+++.++.++.+.
T Consensus 27 ~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~ 73 (107)
T PF09304_consen 27 DEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRN 73 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334666667777777777777666666666666666666555443
No 127
>PF14282 FlxA: FlxA-like protein
Probab=82.12 E-value=3.4 Score=34.29 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhh
Q 008611 526 LESSLSKEKLQSIQLKQDLTEAESQN 551 (559)
Q Consensus 526 ~~~~l~~~~~~~~~l~~~~~~~~~~~ 551 (559)
.+.+.+.++.++..|+.+|..++.+.
T Consensus 49 k~~q~q~Lq~QI~~LqaQI~qlq~q~ 74 (106)
T PF14282_consen 49 KQQQIQLLQAQIQQLQAQIAQLQSQQ 74 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443333
No 128
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=81.85 E-value=1.2e+02 Score=36.17 Aligned_cols=180 Identities=11% Similarity=0.054 Sum_probs=91.4
Q ss_pred eeEEEE--CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCC--CCCCCCccceeEEe--CCEEEEEe
Q 008611 189 HGAAVV--QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSP--ALLTPCAGHSLIPW--ENKLLSIA 262 (559)
Q Consensus 189 ~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~--~~p~~r~~~~~~~~--~~~lyv~G 262 (559)
+.+++. ++.|||.-..+ +.+.++|+.++.=+.+...+.......... ....-..-+.++.. ++.|||..
T Consensus 627 ~GIavd~~gn~LYVaDt~n-----~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad 701 (1057)
T PLN02919 627 QGLAYNAKKNLLYVADTEN-----HALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAM 701 (1057)
T ss_pred cEEEEeCCCCEEEEEeCCC-----ceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEE
Confidence 444444 46788874421 468889988877666644321100000000 00000011223332 57888875
Q ss_pred ccCCCCCCcceEEEEECCCCeEEEeccCCCC-------CC---CccceEEEEE--CCEEEEEcCcCCCCCCcCceEEEEC
Q 008611 263 GHTKDPSEIIQVKVFDLQTCSWSTLKTYGKP-------PV---SRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDL 330 (559)
Q Consensus 263 G~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~-------p~---~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~ 330 (559)
.. .+.++.||+.++....+...|.. +. ...-..+++. ++.|||.... .+.|.+||+
T Consensus 702 ~~------~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~------n~~Irv~D~ 769 (1057)
T PLN02919 702 AG------QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE------SSSIRALDL 769 (1057)
T ss_pred CC------CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC------CCeEEEEEC
Confidence 32 35699999988876655432211 00 0111223333 3468887653 356899998
Q ss_pred CCCceEEecCC-----------CCC----CCc--ccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEecc
Q 008611 331 ETMTWDEIDAV-----------GVP----PSP--RSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (559)
Q Consensus 331 ~t~~W~~~~~~-----------~~~----p~~--r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~~ 390 (559)
.++....+... +.. ... ..-.++++..++.|||.... .+.|.+||+.+.....+.
T Consensus 770 ~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~-----N~rIrviD~~tg~v~tia 841 (1057)
T PLN02919 770 KTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY-----NHKIKKLDPATKRVTTLA 841 (1057)
T ss_pred CCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECC-----CCEEEEEECCCCeEEEEe
Confidence 87654332110 000 000 01124445455668887654 256899999988777664
No 129
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=81.82 E-value=3.2 Score=34.55 Aligned_cols=46 Identities=15% Similarity=0.167 Sum_probs=34.6
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhH
Q 008611 509 PETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDL 554 (559)
Q Consensus 509 ~~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 554 (559)
+...++.+..+.+++.+++..+.+.-+++..|+-+.+-++.+++++
T Consensus 10 l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 10 LDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556667777778888888888888888888887777777777665
No 130
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=81.75 E-value=46 Score=32.41 Aligned_cols=224 Identities=15% Similarity=0.210 Sum_probs=100.6
Q ss_pred eEEecccCCCCC--CcccceeEEEE--CCEEEEEc--cCCCCcccC-c-EEEEEcC-CCeEEEeeeccccCCCCCCCCCC
Q 008611 172 QWIAPPISGQRP--KARYEHGAAVV--QDKMYIYG--GNHNGRYLS-D-MHILDLR-SWAWSKIQAKAVAESTESPSPAL 242 (559)
Q Consensus 172 ~W~~~~~~g~~p--~~r~~~~~~~~--~~~lyv~G--G~~~~~~~~-~-v~~yd~~-t~~W~~~~~~~~~~~~~~~~~~~ 242 (559)
+|.........+ ..+.+..+.+. +++|++|- +........ . .+..... ..+|+........ .....
T Consensus 31 tWs~~~~v~~~~~~~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~-----~~~~~ 105 (275)
T PF13088_consen 31 TWSEPRIVADGPKPGRRYGNPSLVVDPDGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPG-----WFGNF 105 (275)
T ss_dssp EEEEEEEEETSTBTTCEEEEEEEEEETTSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHH-----CCCSC
T ss_pred eeCCCEEEeeccccCCcccCcEEEEeCCCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccc-----cccce
Confidence 899654322233 33444444443 78888885 222211111 1 1244444 4589887543200 00011
Q ss_pred CCCCccceeEEeCCEEEEEeccCCCCCCcceEEEEECCC-CeEEEeccCCCCCCCccceEEEE-E-CCEEEEEcCcCCCC
Q 008611 243 LTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQT-CSWSTLKTYGKPPVSRGGQSVTL-V-GTSLVIFGGEDAKR 319 (559)
Q Consensus 243 p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t-~~W~~~~~~g~~p~~r~~~~~~~-~-~~~lyv~GG~~~~~ 319 (559)
+.+-.+.....-+|.+++.. +.........+..|.... .+|+...+.. +.......+.+ . ++.|+++--.. ..
T Consensus 106 ~~~~~~~~i~~~~G~l~~~~-~~~~~~~~~~~~~~S~D~G~tW~~~~~~~--~~~~~~e~~~~~~~dG~l~~~~R~~-~~ 181 (275)
T PF13088_consen 106 SGPGRGPPIQLPDGRLIAPY-YHESGGSFSAFVYYSDDGGKTWSSGSPIP--DGQGECEPSIVELPDGRLLAVFRTE-GN 181 (275)
T ss_dssp EECSEEEEEEECTTEEEEEE-EEESSCEEEEEEEEESSTTSSEEEEEECE--CSEEEEEEEEEEETTSEEEEEEEEC-SS
T ss_pred eccceeeeeEecCCCEEEEE-eeccccCcceEEEEeCCCCceeecccccc--ccCCcceeEEEECCCCcEEEEEEcc-CC
Confidence 11122222344478887772 211112233444455554 4599887421 22233333333 3 56888876543 11
Q ss_pred CCcCceEEEECC-CCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEeccCCCCCCCC
Q 008611 320 SLLNDLHILDLE-TMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTP 398 (559)
Q Consensus 320 ~~~~~~~~yd~~-t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~~~~~~~p~~ 398 (559)
. .-.+.+..+ -.+|+.+... ..|.+.....++...++.++++.........-.+++-.-...+|..+......+..
T Consensus 182 ~--~~~~~~S~D~G~TWs~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~i~~~~~~ 258 (275)
T PF13088_consen 182 D--DIYISRSTDGGRTWSPPQPT-NLPNPNSSISLVRLSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKTIDDGPNG 258 (275)
T ss_dssp T--EEEEEEESSTTSS-EEEEEE-ECSSCCEEEEEEECTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEEEEEEEE-C
T ss_pred C--cEEEEEECCCCCcCCCceec-ccCcccCCceEEEcCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccEEEeCCCCC
Confidence 1 223333333 4579986533 23555555555555666777776632222112233333346789876322222223
Q ss_pred ccccEEEEE
Q 008611 399 RAGHAGVTI 407 (559)
Q Consensus 399 R~~hs~~~~ 407 (559)
.++++..+.
T Consensus 259 ~~~Y~~~~~ 267 (275)
T PF13088_consen 259 DSGYPSLTQ 267 (275)
T ss_dssp CEEEEEEEE
T ss_pred cEECCeeEE
Confidence 345544433
No 131
>smart00284 OLF Olfactomedin-like domains.
Probab=81.54 E-value=54 Score=31.87 Aligned_cols=71 Identities=20% Similarity=0.163 Sum_probs=44.9
Q ss_pred CCEEEEEeccCCCCCCcceEEEEEC----CCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEEC
Q 008611 255 ENKLLSIAGHTKDPSEIIQVKVFDL----QTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDL 330 (559)
Q Consensus 255 ~~~lyv~GG~~~~~~~~~~v~~yd~----~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~ 330 (559)
++++|++.|.. ...+.+..|.. ....+...- .+|.+-.+.+.++.++.+|.--.. .+.|.+||+
T Consensus 34 ~~~~wv~~~~~---~~~~~v~ey~~~~~f~~~~~~~~~---~Lp~~~~GtG~VVYngslYY~~~~------s~~iiKydL 101 (255)
T smart00284 34 KSLYWYMPLNT---RVLRSVREYSSMSDFQMGKNPTDH---PLPHAGQGTGVVVYNGSLYFNKFN------SHDICRFDL 101 (255)
T ss_pred CceEEEEcccc---CCCcEEEEecCHHHHhccCCceEE---ECCCccccccEEEECceEEEEecC------CccEEEEEC
Confidence 46788886653 12334555532 233332221 367777788888899999985432 467999999
Q ss_pred CCCceEE
Q 008611 331 ETMTWDE 337 (559)
Q Consensus 331 ~t~~W~~ 337 (559)
.+.+-..
T Consensus 102 ~t~~v~~ 108 (255)
T smart00284 102 TTETYQK 108 (255)
T ss_pred CCCcEEE
Confidence 9987753
No 132
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=81.52 E-value=1.2 Score=46.91 Aligned_cols=48 Identities=21% Similarity=0.331 Sum_probs=36.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhh
Q 008611 510 ETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKV 557 (559)
Q Consensus 510 ~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ke 557 (559)
++.+..|+++....|++++.+.++|+++++|+-++++++.+++|+.+.
T Consensus 103 qel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~ 150 (907)
T KOG2264|consen 103 QELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRET 150 (907)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 444555777777777777888888888888888888888888777543
No 133
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=81.48 E-value=74 Score=33.38 Aligned_cols=151 Identities=13% Similarity=0.151 Sum_probs=73.0
Q ss_pred ECCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCCCCCcce
Q 008611 194 VQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQ 273 (559)
Q Consensus 194 ~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~ 273 (559)
.++.++++|+-+. -+-.+|+.+..- ...-.+ ..-.-|++ ++...++.|++-||+++.
T Consensus 121 ~d~t~l~s~sDd~-----v~k~~d~s~a~v-~~~l~~----------htDYVR~g-~~~~~~~hivvtGsYDg~------ 177 (487)
T KOG0310|consen 121 QDNTMLVSGSDDK-----VVKYWDLSTAYV-QAELSG----------HTDYVRCG-DISPANDHIVVTGSYDGK------ 177 (487)
T ss_pred cCCeEEEecCCCc-----eEEEEEcCCcEE-EEEecC----------CcceeEee-ccccCCCeEEEecCCCce------
Confidence 5788999988321 234445555442 222221 11122222 333457899999999765
Q ss_pred EEEEECCCC-eEEEeccCCCCCCCccceEEEEEC-CEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCccccc
Q 008611 274 VKVFDLQTC-SWSTLKTYGKPPVSRGGQSVTLVG-TSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDH 351 (559)
Q Consensus 274 v~~yd~~t~-~W~~~~~~g~~p~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~ 351 (559)
|..||+.+. .|..-- +.-.|.... ++.-+ ..|...|| |.+-++|+.++.=.... .. ..-..--
T Consensus 178 vrl~DtR~~~~~v~el---nhg~pVe~v-l~lpsgs~iasAgG--------n~vkVWDl~~G~qll~~-~~--~H~KtVT 242 (487)
T KOG0310|consen 178 VRLWDTRSLTSRVVEL---NHGCPVESV-LALPSGSLIASAGG--------NSVKVWDLTTGGQLLTS-MF--NHNKTVT 242 (487)
T ss_pred EEEEEeccCCceeEEe---cCCCceeeE-EEcCCCCEEEEcCC--------CeEEEEEecCCceehhh-hh--cccceEE
Confidence 777887776 443221 111222221 11223 34555555 44667777644221110 00 0111122
Q ss_pred EEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEec
Q 008611 352 AAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRP 389 (559)
Q Consensus 352 ~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~ 389 (559)
|+....++.-++-||-+ ..+-+||.. .|+.+
T Consensus 243 cL~l~s~~~rLlS~sLD-----~~VKVfd~t--~~Kvv 273 (487)
T KOG0310|consen 243 CLRLASDSTRLLSGSLD-----RHVKVFDTT--NYKVV 273 (487)
T ss_pred EEEeecCCceEeecccc-----cceEEEEcc--ceEEE
Confidence 34444455667777754 246788843 34444
No 134
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=81.48 E-value=5.8 Score=28.37 Aligned_cols=43 Identities=5% Similarity=0.096 Sum_probs=21.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhh
Q 008611 510 ETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNT 552 (559)
Q Consensus 510 ~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~ 552 (559)
.+.|..+..+.-.+..++.++++....++++++-+.++-..++
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lYE 45 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESVEKIEENVKDLLSLYE 45 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555555544443333
No 135
>PRK11637 AmiB activator; Provisional
Probab=81.09 E-value=2 Score=45.52 Aligned_cols=32 Identities=13% Similarity=0.137 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 008611 520 KAEKEELESSLSKEKLQSIQLKQDLTEAESQN 551 (559)
Q Consensus 520 ~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 551 (559)
.+++..++.+++..++++.+++.++++++.++
T Consensus 81 ~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI 112 (428)
T PRK11637 81 EEAISQASRKLRETQNTLNQLNKQIDELNASI 112 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 136
>PRK11637 AmiB activator; Provisional
Probab=80.81 E-value=2.1 Score=45.40 Aligned_cols=45 Identities=18% Similarity=0.187 Sum_probs=20.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHh
Q 008611 511 TTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLY 555 (559)
Q Consensus 511 ~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 555 (559)
..+..+..+.+++.+++.+++..+.++.+++.++++++.+++++.
T Consensus 79 ~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~ 123 (428)
T PRK11637 79 KQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQE 123 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444444444443333
No 137
>KOG3530 consensus FERM domain protein EHM2 [General function prediction only]
Probab=80.77 E-value=1.9 Score=45.90 Aligned_cols=66 Identities=15% Similarity=0.086 Sum_probs=52.8
Q ss_pred ccCCCChhhHHHHhhheeeeecCCCCCCC--CCC---CC-------hhhhhhHHHHhcCCCCCHHHHHHHHHHHHHHh
Q 008611 36 LTSKFSNDSALLLYALYQQATVGPCNVPK--PSS---WS-------PVEQSKWKSWQGLGNMATTEAMRLFVKILEEE 101 (559)
Q Consensus 36 ~~~~~~~~~~l~ly~l~kqa~~g~~~~~~--p~~---~~-------~~~~~k~~aw~~~~~~s~~~a~~~yv~~~~~~ 101 (559)
+.-..+.+...+|=||--|+-.|||+.++ |+. |. -.+.+=.+-||+++|+++.+|+-.|+..++-|
T Consensus 118 GRL~Cp~~~AaeLaAl~lQsELGDYn~~~Ht~~yVSefRf~p~Qte~LE~~I~e~hK~~rGqspaqAElnyLnkAkwL 195 (616)
T KOG3530|consen 118 GRLYCPFETAAELAALILQSELGDYNEEEHTGGYVSEFRFLPNQTEELEERIFELHKELRGQSPAQAELNYLNKAKWL 195 (616)
T ss_pred CCCCCchhhHHHHHHHHHHHHhcCCChhhccccceeeeEecccccHHHHHHHHHHHHHhcCCCHHHHHHHHHhhhhhh
Confidence 45678999999999999999999999774 221 22 22344478899999999999999999998755
No 138
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=80.77 E-value=4.7 Score=34.70 Aligned_cols=54 Identities=22% Similarity=0.302 Sum_probs=44.3
Q ss_pred cCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 505 ISKHPETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 505 ~~~~~~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
+..++.+.+..+.....-.++++.++.....++..|+.++++.......|++.|
T Consensus 78 l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekrl 131 (131)
T PF04859_consen 78 LAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKRL 131 (131)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 344556666677777777888889999999999999999999999999988865
No 139
>PRK02889 tolB translocation protein TolB; Provisional
Probab=80.75 E-value=80 Score=33.31 Aligned_cols=104 Identities=13% Similarity=0.025 Sum_probs=54.3
Q ss_pred ceEEEEECCCCeEEEeccCCCCCCCccceEEEEECC-EEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccc
Q 008611 272 IQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGT-SLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSD 350 (559)
Q Consensus 272 ~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~ 350 (559)
..++.+|+.+++=..+.. .+... ......-++ +|++....++ ..++|.+|+.+.....+... ... .
T Consensus 220 ~~I~~~dl~~g~~~~l~~---~~g~~-~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~~----~~~-~ 286 (427)
T PRK02889 220 PVVYVHDLATGRRRVVAN---FKGSN-SAPAWSPDGRTLAVALSRDG----NSQIYTVNADGSGLRRLTQS----SGI-D 286 (427)
T ss_pred cEEEEEECCCCCEEEeec---CCCCc-cceEECCCCCEEEEEEccCC----CceEEEEECCCCCcEECCCC----CCC-C
Confidence 569999999887555541 12111 111122233 5555443332 35799999988776666421 111 1
Q ss_pred cEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEecc
Q 008611 351 HAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (559)
Q Consensus 351 ~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~~ 390 (559)
.......++.-++|.....+ ..++|.+|..+.....+.
T Consensus 287 ~~~~wSpDG~~l~f~s~~~g--~~~Iy~~~~~~g~~~~lt 324 (427)
T PRK02889 287 TEPFFSPDGRSIYFTSDRGG--APQIYRMPASGGAAQRVT 324 (427)
T ss_pred cCeEEcCCCCEEEEEecCCC--CcEEEEEECCCCceEEEe
Confidence 22334444443444322111 246899998877776664
No 140
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=79.33 E-value=9.3 Score=27.37 Aligned_cols=39 Identities=26% Similarity=0.374 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhH
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDL 554 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 554 (559)
+.+++.++..++..+...+.+++++...+++.++-.+++
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777788888888888888888888888777766544
No 141
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=79.27 E-value=86 Score=32.77 Aligned_cols=195 Identities=15% Similarity=0.115 Sum_probs=97.8
Q ss_pred cCcEEEEEcCCCeEE-EeeeccccCCCCCCCCCCCCCCc--cceeEEeCCEEEEEeccCCCCCCcceEEEEECCCC----
Q 008611 210 LSDMHILDLRSWAWS-KIQAKAVAESTESPSPALLTPCA--GHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTC---- 282 (559)
Q Consensus 210 ~~~v~~yd~~t~~W~-~~~~~~~~~~~~~~~~~~p~~r~--~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~---- 282 (559)
...++++.+.+..-. .+-... +.... ......-+++.+++.-.... . .+.++.+|....
T Consensus 201 ~~~v~~~~~gt~~~~d~lvfe~------------~~~~~~~~~~~~s~d~~~l~i~~~~~~-~-~s~v~~~d~~~~~~~~ 266 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVFEE------------PDEPFWFVSVSRSKDGRYLFISSSSGT-S-ESEVYLLDLDDGGSPD 266 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEEC-------------TTCTTSEEEEEE-TTSSEEEEEEESSS-S-EEEEEEEECCCTTTSS
T ss_pred CcEEEEEECCCChHhCeeEEee------------cCCCcEEEEEEecCcccEEEEEEEccc-c-CCeEEEEeccccCCCc
Confidence 667888888876544 111111 11222 12222234444333332222 2 589999999875
Q ss_pred -eEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCCc---eE-EecCCCCCCCcccccEEEEEc
Q 008611 283 -SWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMT---WD-EIDAVGVPPSPRSDHAAAVHA 357 (559)
Q Consensus 283 -~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~---W~-~~~~~~~~p~~r~~~~~~~~~ 357 (559)
.|..+.. +..-..+.+...++.+|+....+.. ...|..+++.... |. .+.. +.....-..+...
T Consensus 267 ~~~~~l~~----~~~~~~~~v~~~~~~~yi~Tn~~a~---~~~l~~~~l~~~~~~~~~~~l~~----~~~~~~l~~~~~~ 335 (414)
T PF02897_consen 267 AKPKLLSP----REDGVEYYVDHHGDRLYILTNDDAP---NGRLVAVDLADPSPAEWWTVLIP----EDEDVSLEDVSLF 335 (414)
T ss_dssp -SEEEEEE----SSSS-EEEEEEETTEEEEEE-TT-T---T-EEEEEETTSTSGGGEEEEEE------SSSEEEEEEEEE
T ss_pred CCcEEEeC----CCCceEEEEEccCCEEEEeeCCCCC---CcEEEEecccccccccceeEEcC----CCCceeEEEEEEE
Confidence 7888863 2223333455568899998764332 4578899988765 66 4431 2222222223333
Q ss_pred CCEEEEEcCCCCCCCcCceEEEECC-CCeeEeccCCCCCCCCccccEEEEECCceecceeeeeeccCCCcEEEEEcCcCC
Q 008611 358 ERYLLIFGGGSHAACFNDLHVLDLQ-TMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNG 436 (559)
Q Consensus 358 ~~~l~v~GG~~~~~~~~dv~~~d~~-~~~W~~~~~~~~~p~~R~~hs~~~~~~~~~iG~s~~~~~~~~~~~l~v~GG~~~ 436 (559)
+++|++.-=. .....|.++|+. +..-..+. +| -.+.. ..++. ........|.+.++.
T Consensus 336 ~~~Lvl~~~~---~~~~~l~v~~~~~~~~~~~~~----~p--~~g~v-~~~~~-----------~~~~~~~~~~~ss~~- 393 (414)
T PF02897_consen 336 KDYLVLSYRE---NGSSRLRVYDLDDGKESREIP----LP--EAGSV-SGVSG-----------DFDSDELRFSYSSFT- 393 (414)
T ss_dssp TTEEEEEEEE---TTEEEEEEEETT-TEEEEEEE----SS--SSSEE-EEEES------------TT-SEEEEEEEETT-
T ss_pred CCEEEEEEEE---CCccEEEEEECCCCcEEeeec----CC--cceEE-eccCC-----------CCCCCEEEEEEeCCC-
Confidence 6667665321 124578999998 43333332 22 22211 11111 112233445566543
Q ss_pred CCcccEEEEeCCCcce
Q 008611 437 RYNNEVHVLKPSHKST 452 (559)
Q Consensus 437 ~~~~~v~~~d~~~~~~ 452 (559)
.-..+|.||+.++..
T Consensus 394 -~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 394 -TPPTVYRYDLATGEL 408 (414)
T ss_dssp -EEEEEEEEETTTTCE
T ss_pred -CCCEEEEEECCCCCE
Confidence 346899999988754
No 142
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=79.16 E-value=2.9 Score=40.70 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhh
Q 008611 517 ATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYK 556 (559)
Q Consensus 517 ~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~k 556 (559)
+.|..+++.++.+++..+..+.+++..+++.++++++|++
T Consensus 52 ~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~ 91 (251)
T PF11932_consen 52 QELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQ 91 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333
No 143
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=79.13 E-value=79 Score=32.25 Aligned_cols=169 Identities=19% Similarity=0.201 Sum_probs=82.2
Q ss_pred cceeEEEE--CCEEEEEccCCCCcccCcEEEEEcCCCe--EEEeeeccccCCCCCCCCCCCCCCccceeEEe-CCEEEEE
Q 008611 187 YEHGAAVV--QDKMYIYGGNHNGRYLSDMHILDLRSWA--WSKIQAKAVAESTESPSPALLTPCAGHSLIPW-ENKLLSI 261 (559)
Q Consensus 187 ~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~lyv~ 261 (559)
.-|++... ++.||+..= -.+.+++|+..... ........ .+..-.|| |.+..- +.++||.
T Consensus 145 h~H~v~~~pdg~~v~v~dl-----G~D~v~~~~~~~~~~~l~~~~~~~--------~~~G~GPR--h~~f~pdg~~~Yv~ 209 (345)
T PF10282_consen 145 HPHQVVFSPDGRFVYVPDL-----GADRVYVYDIDDDTGKLTPVDSIK--------VPPGSGPR--HLAFSPDGKYAYVV 209 (345)
T ss_dssp CEEEEEE-TTSSEEEEEET-----TTTEEEEEEE-TTS-TEEEEEEEE--------CSTTSSEE--EEEE-TTSSEEEEE
T ss_pred cceeEEECCCCCEEEEEec-----CCCEEEEEEEeCCCceEEEeeccc--------cccCCCCc--EEEEcCCcCEEEEe
Confidence 34555555 457877621 13678888887765 55533321 01111122 222222 3578888
Q ss_pred eccCCCCCCcceEEEEECC--CCeEEEeccCCCCCC---Cc-cceEEEEE--CCEEEEEcCcCCCCCCcCceEEEEC--C
Q 008611 262 AGHTKDPSEIIQVKVFDLQ--TCSWSTLKTYGKPPV---SR-GGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDL--E 331 (559)
Q Consensus 262 GG~~~~~~~~~~v~~yd~~--t~~W~~~~~~g~~p~---~r-~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~--~ 331 (559)
.-. .+.+.+|+.. +..++.+......|. .. ..+.++.. +..||+.-.. .+.|.+|++ .
T Consensus 210 ~e~------s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~------~~sI~vf~~d~~ 277 (345)
T PF10282_consen 210 NEL------SNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG------SNSISVFDLDPA 277 (345)
T ss_dssp ETT------TTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT------TTEEEEEEECTT
T ss_pred cCC------CCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc------CCEEEEEEEecC
Confidence 654 3445555554 777766643222322 12 22333333 3478875432 467888887 4
Q ss_pred CCceEEecCCCC-CCCcccccEEEEE-cCCEEEEEcCCCCCCCcCceEEE--ECCCCeeEecc
Q 008611 332 TMTWDEIDAVGV-PPSPRSDHAAAVH-AERYLLIFGGGSHAACFNDLHVL--DLQTMEWSRPT 390 (559)
Q Consensus 332 t~~W~~~~~~~~-~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~dv~~~--d~~~~~W~~~~ 390 (559)
+...+.+..... ...||. +++- .+++||+.+..+ +.|.+| |..+..+..+.
T Consensus 278 ~g~l~~~~~~~~~G~~Pr~---~~~s~~g~~l~Va~~~s-----~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 278 TGTLTLVQTVPTGGKFPRH---FAFSPDGRYLYVANQDS-----NTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp TTTEEEEEEEEESSSSEEE---EEE-TTSSEEEEEETTT-----TEEEEEEEETTTTEEEEEE
T ss_pred CCceEEEEEEeCCCCCccE---EEEeCCCCEEEEEecCC-----CeEEEEEEeCCCCcEEEec
Confidence 455554432200 122442 3332 355666655432 345555 56788888763
No 144
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=78.98 E-value=3 Score=39.94 Aligned_cols=52 Identities=17% Similarity=0.192 Sum_probs=36.7
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhhC
Q 008611 508 HPETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVIA 559 (559)
Q Consensus 508 ~~~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kelq 559 (559)
+|.+.+..++.|++|.++.+-+|+-.+..+++-++++++....+..|.+|.|
T Consensus 19 KIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq 70 (307)
T PF10481_consen 19 KIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQ 70 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Confidence 3566666777777777777777777777777777777777666666666654
No 145
>PRK04406 hypothetical protein; Provisional
Probab=78.94 E-value=7 Score=30.17 Aligned_cols=28 Identities=21% Similarity=0.362 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 008611 524 EELESSLSKEKLQSIQLKQDLTEAESQN 551 (559)
Q Consensus 524 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 551 (559)
+++-..+-+.++++..|+.++..+..++
T Consensus 28 e~LN~~v~~Qq~~I~~L~~ql~~L~~rl 55 (75)
T PRK04406 28 EELNDALSQQQLLITKMQDQMKYVVGKV 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444443333
No 146
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.88 E-value=4.9 Score=29.84 Aligned_cols=35 Identities=14% Similarity=0.127 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhh
Q 008611 518 TLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNT 552 (559)
Q Consensus 518 ~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~ 552 (559)
.|..+.+..+++.++.++++++|+++-..-+.++.
T Consensus 36 ~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlr 70 (79)
T COG3074 36 SLSQEVQNAQHQREALERENEQLKEEQNGWQERLR 70 (79)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444445555555544444444443
No 147
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=78.77 E-value=8.1 Score=28.67 Aligned_cols=42 Identities=21% Similarity=0.206 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 517 ATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 517 ~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
..-+..+++++..+...+.++..|..++..++..++.|..++
T Consensus 22 ~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 22 QRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344455666666677777777777777777777777766653
No 148
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=78.73 E-value=72 Score=31.57 Aligned_cols=130 Identities=17% Similarity=0.178 Sum_probs=69.9
Q ss_pred eCCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEE-ECCEEEEEcCcCCCCCCcCceEEEECCC
Q 008611 254 WENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTL-VGTSLVIFGGEDAKRSLLNDLHILDLET 332 (559)
Q Consensus 254 ~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t 332 (559)
.+..=.+.||.+. .+.+||+.+..=..+-..+ .| -|+ +.. ...-.+|.||++. .+-.+|+..
T Consensus 63 ~d~~~~~~G~~dg------~vr~~Dln~~~~~~igth~-~~-i~c---i~~~~~~~~vIsgsWD~------~ik~wD~R~ 125 (323)
T KOG1036|consen 63 ADESTIVTGGLDG------QVRRYDLNTGNEDQIGTHD-EG-IRC---IEYSYEVGCVISGSWDK------TIKFWDPRN 125 (323)
T ss_pred cCCceEEEeccCc------eEEEEEecCCcceeeccCC-Cc-eEE---EEeeccCCeEEEcccCc------cEEEEeccc
Confidence 3555566677654 4889999988765554221 11 111 111 2345677888754 366777765
Q ss_pred CceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEe------ccC----CCCCCCCcccc
Q 008611 333 MTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSR------PTQ----QGEIPTPRAGH 402 (559)
Q Consensus 333 ~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~------~~~----~~~~p~~R~~h 402 (559)
.. .. +..-.+..-+++.+. ++ .+|+|+.+ ..+.+||+.+..-.. +.. ....| .+.|+
T Consensus 126 ~~---~~--~~~d~~kkVy~~~v~-g~-~LvVg~~~-----r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~p-n~eGy 192 (323)
T KOG1036|consen 126 KV---VV--GTFDQGKKVYCMDVS-GN-RLVVGTSD-----RKVLIYDLRNLDEPFQRRESSLKYQTRCVALVP-NGEGY 192 (323)
T ss_pred cc---cc--cccccCceEEEEecc-CC-EEEEeecC-----ceEEEEEcccccchhhhccccceeEEEEEEEec-CCCce
Confidence 11 11 111122233445443 44 67777643 457888886542111 000 01123 67888
Q ss_pred EEEEECCceec
Q 008611 403 AGVTIGENWFL 413 (559)
Q Consensus 403 s~~~~~~~~~i 413 (559)
.+..+++++++
T Consensus 193 ~~sSieGRVav 203 (323)
T KOG1036|consen 193 VVSSIEGRVAV 203 (323)
T ss_pred EEEeecceEEE
Confidence 88888888877
No 149
>PHA02047 phage lambda Rz1-like protein
Probab=78.05 E-value=8.1 Score=30.82 Aligned_cols=29 Identities=14% Similarity=0.040 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 008611 515 LIATLKAEKEELESSLSKEKLQSIQLKQD 543 (559)
Q Consensus 515 ~~~~l~~e~~~~~~~l~~~~~~~~~l~~~ 543 (559)
+...+..+++..+.++...|+++..|+++
T Consensus 35 ~a~~la~qLE~a~~r~~~~Q~~V~~l~~k 63 (101)
T PHA02047 35 EAKRQTARLEALEVRYATLQRHVQAVEAR 63 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666666666655
No 150
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=77.63 E-value=9.5 Score=31.13 Aligned_cols=48 Identities=19% Similarity=0.104 Sum_probs=30.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 511 TTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 511 ~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
+.+..-..|+.++.+.++.|...++++.-|....+++.+|.+.|..||
T Consensus 23 eEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El 70 (102)
T PF10205_consen 23 EEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEEL 70 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445666667777777777777776666666666666666655554
No 151
>PRK03629 tolB translocation protein TolB; Provisional
Probab=77.54 E-value=1e+02 Score=32.61 Aligned_cols=104 Identities=11% Similarity=0.070 Sum_probs=56.0
Q ss_pred ceEEEEECCCCeEEEeccCCCCCCCccceEEEEECC-EEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccc
Q 008611 272 IQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGT-SLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSD 350 (559)
Q Consensus 272 ~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~ 350 (559)
..++.+|+.+++-..+.. .+..... ....-++ +|++....++ ..++|.+|+.+.....+... +. ..
T Consensus 223 ~~i~i~dl~~G~~~~l~~---~~~~~~~-~~~SPDG~~La~~~~~~g----~~~I~~~d~~tg~~~~lt~~---~~--~~ 289 (429)
T PRK03629 223 SALVIQTLANGAVRQVAS---FPRHNGA-PAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTDG---RS--NN 289 (429)
T ss_pred cEEEEEECCCCCeEEccC---CCCCcCC-eEECCCCCEEEEEEcCCC----CcEEEEEECCCCCEEEccCC---CC--Cc
Confidence 578999998887666642 2211111 1122234 5555433222 23599999999888776432 11 11
Q ss_pred cEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEecc
Q 008611 351 HAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (559)
Q Consensus 351 ~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~~ 390 (559)
.......++..++|.....+ ..++|.+|+.+.....+.
T Consensus 290 ~~~~wSPDG~~I~f~s~~~g--~~~Iy~~d~~~g~~~~lt 327 (429)
T PRK03629 290 TEPTWFPDSQNLAYTSDQAG--RPQVYKVNINGGAPQRIT 327 (429)
T ss_pred CceEECCCCCEEEEEeCCCC--CceEEEEECCCCCeEEee
Confidence 23334445444444332211 247999999887666653
No 152
>PTZ00421 coronin; Provisional
Probab=77.53 E-value=1.1e+02 Score=33.07 Aligned_cols=43 Identities=5% Similarity=-0.025 Sum_probs=26.5
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 008611 509 PETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQN 551 (559)
Q Consensus 509 ~~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 551 (559)
+.+....+++|..++.+-++.++..++++++.+.++-|.-+.+
T Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (493)
T PTZ00421 448 LDERLGRLQALSEKLRTQHEEIKRCREALQKKESIVMETLEKI 490 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555777777777777777777777666665555444333
No 153
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.08 E-value=3.5 Score=39.89 Aligned_cols=38 Identities=16% Similarity=0.365 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 008611 514 HLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQN 551 (559)
Q Consensus 514 ~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 551 (559)
..+.+++.+..+++.+..+.++++.+|+.+|++.+.++
T Consensus 59 ~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I 96 (265)
T COG3883 59 NQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENI 96 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444
No 154
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=76.87 E-value=3.4 Score=41.94 Aligned_cols=44 Identities=20% Similarity=0.176 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhh
Q 008611 513 EHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYK 556 (559)
Q Consensus 513 ~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~k 556 (559)
+..+.+.++++.+++.++++.+.+++.+..+..+.+.+++++++
T Consensus 222 ~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~ 265 (325)
T PF08317_consen 222 KEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEK 265 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444555555555544443
No 155
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=76.61 E-value=7.9 Score=29.09 Aligned_cols=42 Identities=33% Similarity=0.404 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhh
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKV 557 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ke 557 (559)
+..+..|++++-.++...++++++++.+..+.+..-..++|.
T Consensus 5 v~~l~~EkeeL~~klk~~qeel~~~k~~~~~~~~ik~~~eK~ 46 (69)
T PF08912_consen 5 VANLAKEKEELNNKLKKQQEELQKLKEEEQEIEEIKAQYEKQ 46 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHC
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777776665554444443444443
No 156
>PRK09039 hypothetical protein; Validated
Probab=76.55 E-value=5 Score=41.00 Aligned_cols=43 Identities=14% Similarity=0.135 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
+..|+.|++.++.++...+.++...+++..+.+.++++|.++|
T Consensus 139 V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L 181 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRL 181 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555555555555544
No 157
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=76.41 E-value=68 Score=30.06 Aligned_cols=105 Identities=14% Similarity=0.140 Sum_probs=50.4
Q ss_pred CCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEEEECCCC
Q 008611 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETM 333 (559)
Q Consensus 255 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~ 333 (559)
++..+++|+.+ ..+..||+.+.+....-. .....-.++... ++.+++.|+.+ +.+.+||+.+.
T Consensus 62 ~~~~l~~~~~~------~~i~i~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~------~~i~~~~~~~~ 125 (289)
T cd00200 62 DGTYLASGSSD------KTIRLWDLETGECVRTLT----GHTSYVSSVAFSPDGRILSSSSRD------KTIKVWDVETG 125 (289)
T ss_pred CCCEEEEEcCC------CeEEEEEcCcccceEEEe----ccCCcEEEEEEcCCCCEEEEecCC------CeEEEEECCCc
Confidence 44566666653 358888888753222210 011111222222 33666666532 45888998754
Q ss_pred ceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCC
Q 008611 334 TWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTM 384 (559)
Q Consensus 334 ~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~ 384 (559)
.-...-. .....-.++....++.+++.|+.+ ..+.+||+.+.
T Consensus 126 ~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~~-----~~i~i~d~~~~ 167 (289)
T cd00200 126 KCLTTLR----GHTDWVNSVAFSPDGTFVASSSQD-----GTIKLWDLRTG 167 (289)
T ss_pred EEEEEec----cCCCcEEEEEEcCcCCEEEEEcCC-----CcEEEEEcccc
Confidence 4322211 111122334444444455554422 35888988744
No 158
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=75.72 E-value=88 Score=31.76 Aligned_cols=116 Identities=15% Similarity=0.098 Sum_probs=63.3
Q ss_pred CEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeC-CEEEEEeccCCC---CCCc
Q 008611 196 DKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWE-NKLLSIAGHTKD---PSEI 271 (559)
Q Consensus 196 ~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~-~~lyv~GG~~~~---~~~~ 271 (559)
.++||.--.... ....+++||..+++-.-+-+ .+-.++.+..-+ ..+|+..=+.+. +...
T Consensus 3 ~rvyV~D~~~~~-~~~rv~viD~d~~k~lGmi~---------------~g~~~~~~~spdgk~~y~a~T~~sR~~rG~Rt 66 (342)
T PF06433_consen 3 HRVYVQDPVFFH-MTSRVYVIDADSGKLLGMID---------------TGFLGNVALSPDGKTIYVAETFYSRGTRGERT 66 (342)
T ss_dssp TEEEEEE-GGGG-SSEEEEEEETTTTEEEEEEE---------------EESSEEEEE-TTSSEEEEEEEEEEETTEEEEE
T ss_pred cEEEEECCcccc-ccceEEEEECCCCcEEEEee---------------cccCCceeECCCCCEEEEEEEEEeccccccce
Confidence 467777442222 23579999998888654433 334445444434 456665543322 4567
Q ss_pred ceEEEEECCCCe--EEEeccCCCCCCC-ccc-----eEEEEE-CC-EEEEEcCcCCCCCCcCceEEEECCCCceEE
Q 008611 272 IQVKVFDLQTCS--WSTLKTYGKPPVS-RGG-----QSVTLV-GT-SLVIFGGEDAKRSLLNDLHILDLETMTWDE 337 (559)
Q Consensus 272 ~~v~~yd~~t~~--W~~~~~~g~~p~~-r~~-----~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~ 337 (559)
+-+..||+.|.+ ++..- |.. |.. +..... ++ .+||+= . ....++-+.|+...+...
T Consensus 67 Dvv~~~D~~TL~~~~EI~i-----P~k~R~~~~~~~~~~~ls~dgk~~~V~N-~----TPa~SVtVVDl~~~kvv~ 132 (342)
T PF06433_consen 67 DVVEIWDTQTLSPTGEIEI-----PPKPRAQVVPYKNMFALSADGKFLYVQN-F----TPATSVTVVDLAAKKVVG 132 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE-----TTS-B--BS--GGGEEE-TTSSEEEEEE-E----SSSEEEEEEETTTTEEEE
T ss_pred eEEEEEecCcCcccceEec-----CCcchheecccccceEEccCCcEEEEEc-c----CCCCeEEEEECCCCceee
Confidence 889999999985 44332 221 332 112222 33 566642 1 134678888988877643
No 159
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=75.69 E-value=6.5 Score=34.94 Aligned_cols=17 Identities=29% Similarity=0.368 Sum_probs=6.5
Q ss_pred hHHHHHHHHHhhhhhHh
Q 008611 539 QLKQDLTEAESQNTDLY 555 (559)
Q Consensus 539 ~l~~~~~~~~~~~~~~~ 555 (559)
-|+|-|..++++..+|.
T Consensus 47 TLrqvL~aKer~~~eLK 63 (162)
T PF04201_consen 47 TLRQVLAAKERHCAELK 63 (162)
T ss_pred HHHHHHHHHHHhHHHHH
Confidence 33333333333333333
No 160
>smart00338 BRLZ basic region leucin zipper.
Probab=75.50 E-value=8.5 Score=28.64 Aligned_cols=37 Identities=24% Similarity=0.302 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhh
Q 008611 521 AEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKV 557 (559)
Q Consensus 521 ~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ke 557 (559)
..+.+++.+++....++..|..++..++.++..+..+
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555555444
No 161
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=75.31 E-value=1.2e+02 Score=32.57 Aligned_cols=18 Identities=17% Similarity=0.178 Sum_probs=13.8
Q ss_pred CcceEEEEECCCCe--EEEe
Q 008611 270 EIIQVKVFDLQTCS--WSTL 287 (559)
Q Consensus 270 ~~~~v~~yd~~t~~--W~~~ 287 (559)
..+.++.+|..+++ |+.-
T Consensus 254 ~~~~l~Ald~~tG~~~W~~~ 273 (488)
T cd00216 254 YTDSIVALDADTGKVKWFYQ 273 (488)
T ss_pred ceeeEEEEcCCCCCEEEEee
Confidence 45689999999875 8864
No 162
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=75.22 E-value=8.6 Score=32.61 Aligned_cols=42 Identities=26% Similarity=0.278 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 517 ATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 517 ~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
+.|..+++.++.+++..+++++++++.+.+...++..+.+|+
T Consensus 76 ~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 76 EYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 457777888889999999999999999999999998888886
No 163
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=74.92 E-value=5.8 Score=41.67 Aligned_cols=44 Identities=14% Similarity=0.144 Sum_probs=30.5
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhh
Q 008611 509 PETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNT 552 (559)
Q Consensus 509 ~~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~ 552 (559)
.++.|..++.|++|++.+..+++..++++++|+.+++.++.+++
T Consensus 78 asELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 78 AAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 35566667777777776667777777777777777777776663
No 164
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=74.92 E-value=97 Score=31.12 Aligned_cols=130 Identities=14% Similarity=0.151 Sum_probs=76.8
Q ss_pred CEEEEEccC-CCC---ccc-CcEEEEEcCCC-----eEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccC
Q 008611 196 DKMYIYGGN-HNG---RYL-SDMHILDLRSW-----AWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHT 265 (559)
Q Consensus 196 ~~lyv~GG~-~~~---~~~-~~v~~yd~~t~-----~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~ 265 (559)
..++++|-. ..+ ... ..+++|++... +++.+.... ..-.-++++.++++|++..|
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~-------------~~g~V~ai~~~~~~lv~~~g-- 106 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTE-------------VKGPVTAICSFNGRLVVAVG-- 106 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEE-------------ESS-EEEEEEETTEEEEEET--
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEe-------------ecCcceEhhhhCCEEEEeec--
Confidence 467777752 211 122 67999999885 666665543 22235667777999776665
Q ss_pred CCCCCcceEEEEECCCCe-EEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCc--eEEEECCCCceEEecCCC
Q 008611 266 KDPSEIIQVKVFDLQTCS-WSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLND--LHILDLETMTWDEIDAVG 342 (559)
Q Consensus 266 ~~~~~~~~v~~yd~~t~~-W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~--~~~yd~~t~~W~~~~~~~ 342 (559)
+.+..|++...+ +...+. ...+-...++.+.++.|++ |-. ... ++.|+....+-..+...
T Consensus 107 ------~~l~v~~l~~~~~l~~~~~---~~~~~~i~sl~~~~~~I~v-gD~------~~sv~~~~~~~~~~~l~~va~d- 169 (321)
T PF03178_consen 107 ------NKLYVYDLDNSKTLLKKAF---YDSPFYITSLSVFKNYILV-GDA------MKSVSLLRYDEENNKLILVARD- 169 (321)
T ss_dssp ------TEEEEEEEETTSSEEEEEE---E-BSSSEEEEEEETTEEEE-EES------SSSEEEEEEETTTE-EEEEEEE-
T ss_pred ------CEEEEEEccCcccchhhhe---ecceEEEEEEeccccEEEE-EEc------ccCEEEEEEEccCCEEEEEEec-
Confidence 367888888877 877763 2333355566677886664 422 233 45667766667766543
Q ss_pred CCCCcccccEEEEE-cCC
Q 008611 343 VPPSPRSDHAAAVH-AER 359 (559)
Q Consensus 343 ~~p~~r~~~~~~~~-~~~ 359 (559)
+.++...++..+ +++
T Consensus 170 --~~~~~v~~~~~l~d~~ 185 (321)
T PF03178_consen 170 --YQPRWVTAAEFLVDED 185 (321)
T ss_dssp --SS-BEEEEEEEE-SSS
T ss_pred --CCCccEEEEEEecCCc
Confidence 456666666666 444
No 165
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.71 E-value=8.4 Score=37.34 Aligned_cols=45 Identities=18% Similarity=0.271 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhh
Q 008611 512 TEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYK 556 (559)
Q Consensus 512 ~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~k 556 (559)
++..|+.|..+.+++..+++..+.++.++++++.+++.++++++.
T Consensus 50 ~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~ 94 (265)
T COG3883 50 IQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKE 94 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444443
No 166
>PHA02047 phage lambda Rz1-like protein
Probab=74.62 E-value=9.1 Score=30.55 Aligned_cols=42 Identities=10% Similarity=0.176 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 517 ATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 517 ~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
..-.++.+.+..+|+..+.++..+++++.+++++-+..++||
T Consensus 30 g~~h~~a~~la~qLE~a~~r~~~~Q~~V~~l~~kae~~t~Ei 71 (101)
T PHA02047 30 GIAHEEAKRQTARLEALEVRYATLQRHVQAVEARTNTQRQEV 71 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677778888888888888888888888877765555554
No 167
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=74.44 E-value=2e+02 Score=34.48 Aligned_cols=169 Identities=12% Similarity=0.050 Sum_probs=85.4
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe--CCEEEEEeccCCCCCCcc
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHTKDPSEII 272 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~ 272 (559)
++.|||... ..+.+++||+.++....+...+..............-..-++++.. ++.|||.... .+
T Consensus 694 ~g~LyVad~-----~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~------n~ 762 (1057)
T PLN02919 694 NEKVYIAMA-----GQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE------SS 762 (1057)
T ss_pred CCeEEEEEC-----CCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC------CC
Confidence 567787743 1245888998887665543221000000000000000111222222 3468887543 35
Q ss_pred eEEEEECCCCeEEEeccCCC-CCC--------------Cc--cceEEEEE-CCEEEEEcCcCCCCCCcCceEEEECCCCc
Q 008611 273 QVKVFDLQTCSWSTLKTYGK-PPV--------------SR--GGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMT 334 (559)
Q Consensus 273 ~v~~yd~~t~~W~~~~~~g~-~p~--------------~r--~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~ 334 (559)
.|.+||+.++....+...++ .+. .. .-.++++. ++.|||.-.. .+.|.+||+.+..
T Consensus 763 ~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~------N~rIrviD~~tg~ 836 (1057)
T PLN02919 763 SIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY------NHKIKKLDPATKR 836 (1057)
T ss_pred eEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECC------CCEEEEEECCCCe
Confidence 79999998776433321000 000 00 11123332 4578887643 3568999999888
Q ss_pred eEEecCCCCC-------CCc--ccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCe
Q 008611 335 WDEIDAVGVP-------PSP--RSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTME 385 (559)
Q Consensus 335 W~~~~~~~~~-------p~~--r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~ 385 (559)
...+...|.. ... ..-+++++..++.|||....+ +.|.++|+.+..
T Consensus 837 v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N-----n~Irvid~~~~~ 891 (1057)
T PLN02919 837 VTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN-----SLIRYLDLNKGE 891 (1057)
T ss_pred EEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCC-----CEEEEEECCCCc
Confidence 7766533211 001 112344555566788876543 468899988765
No 168
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=74.44 E-value=1.2e+02 Score=31.98 Aligned_cols=211 Identities=8% Similarity=0.101 Sum_probs=0.0
Q ss_pred ccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEE-eccCCCCCCcceEEEEECCCCeEEEe
Q 008611 209 YLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSI-AGHTKDPSEIIQVKVFDLQTCSWSTL 287 (559)
Q Consensus 209 ~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~-GG~~~~~~~~~~v~~yd~~t~~W~~~ 287 (559)
+.+++|.|++.+++=.++... .+.....-..-+|+-.+| -=...++-...++++++.+.++-..+
T Consensus 57 ~~DdlWe~slk~g~~~ritS~--------------lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRi 122 (668)
T COG4946 57 CCDDLWEYSLKDGKPLRITSG--------------LGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRI 122 (668)
T ss_pred echHHHHhhhccCCeeEEecc--------------cceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEE
Q ss_pred ccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEcC-
Q 008611 288 KTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGG- 366 (559)
Q Consensus 288 ~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG- 366 (559)
...| ..-...+...-++.|+|.--.-..-.....+|..+.+......+..- -.+..++.++ ++++|-
T Consensus 123 TyfG---r~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e~LnlG--------pathiv~~dg-~ivigRn 190 (668)
T COG4946 123 TYFG---RRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTEPLNLG--------PATHIVIKDG-IIVIGRN 190 (668)
T ss_pred EEec---cccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceeeeccCC--------ceeeEEEeCC-EEEEccC
Q ss_pred --------CCCCCCcCceEEEECCCCeeEeccCCCCCCCCccccEEEEECCceec-------------------------
Q 008611 367 --------GSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFL------------------------- 413 (559)
Q Consensus 367 --------~~~~~~~~dv~~~d~~~~~W~~~~~~~~~p~~R~~hs~~~~~~~~~i------------------------- 413 (559)
.-.+..-..+|+=.....+++++ -+++..-++- +++++++|.
T Consensus 191 tydLP~WK~YkGGtrGklWis~d~g~tFeK~---vdl~~~vS~P--mIV~~RvYFlsD~eG~GnlYSvdldGkDlrrHTn 265 (668)
T COG4946 191 TYDLPHWKGYKGGTRGKLWISSDGGKTFEKF---VDLDGNVSSP--MIVGERVYFLSDHEGVGNLYSVDLDGKDLRRHTN 265 (668)
T ss_pred cccCcccccccCCccceEEEEecCCcceeee---eecCCCcCCc--eEEcceEEEEecccCccceEEeccCCchhhhcCC
Q ss_pred --ceeeeeeccCCCcEEEEEcCcCCCCcccEEEEeCCCcceecccC
Q 008611 414 --GLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSHKSTLSSKM 457 (559)
Q Consensus 414 --G~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~~d~~~~~~~~~~~ 457 (559)
-.-...+..+|+.-+|--|| +||.|||.+.......+
T Consensus 266 FtdYY~R~~nsDGkrIvFq~~G-------dIylydP~td~lekldI 304 (668)
T COG4946 266 FTDYYPRNANSDGKRIVFQNAG-------DIYLYDPETDSLEKLDI 304 (668)
T ss_pred chhccccccCCCCcEEEEecCC-------cEEEeCCCcCcceeeec
No 169
>PRK01742 tolB translocation protein TolB; Provisional
Probab=74.38 E-value=1.2e+02 Score=31.97 Aligned_cols=139 Identities=13% Similarity=0.106 Sum_probs=70.0
Q ss_pred CcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEec-cCCCCCCcceEEEEECCCCeEEEecc
Q 008611 211 SDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAG-HTKDPSEIIQVKVFDLQTCSWSTLKT 289 (559)
Q Consensus 211 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG-~~~~~~~~~~v~~yd~~t~~W~~~~~ 289 (559)
..++++|+.++.-..+.... .........-++..++++. ..+ ..++|.+|+.+.....+..
T Consensus 228 ~~i~i~dl~tg~~~~l~~~~--------------g~~~~~~wSPDG~~La~~~~~~g----~~~Iy~~d~~~~~~~~lt~ 289 (429)
T PRK01742 228 SQLVVHDLRSGARKVVASFR--------------GHNGAPAFSPDGSRLAFASSKDG----VLNIYVMGANGGTPSQLTS 289 (429)
T ss_pred cEEEEEeCCCCceEEEecCC--------------CccCceeECCCCCEEEEEEecCC----cEEEEEEECCCCCeEeecc
Confidence 46899999887766553321 1111112222554444433 222 2468999998888777642
Q ss_pred CCCCCCCccceEEEEECCE-EEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccccEEEEEcC-CEEEEEcCC
Q 008611 290 YGKPPVSRGGQSVTLVGTS-LVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAE-RYLLIFGGG 367 (559)
Q Consensus 290 ~g~~p~~r~~~~~~~~~~~-lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~-~~l~v~GG~ 367 (559)
. .. ........-+++ |++....++ ...+|.++..+..-..+.. .. +...+..+ +.|++.++
T Consensus 290 ~---~~-~~~~~~wSpDG~~i~f~s~~~g----~~~I~~~~~~~~~~~~l~~-----~~---~~~~~SpDG~~ia~~~~- 352 (429)
T PRK01742 290 G---AG-NNTEPSWSPDGQSILFTSDRSG----SPQVYRMSASGGGASLVGG-----RG---YSAQISADGKTLVMING- 352 (429)
T ss_pred C---CC-CcCCEEECCCCCEEEEEECCCC----CceEEEEECCCCCeEEecC-----CC---CCccCCCCCCEEEEEcC-
Confidence 1 11 111112222444 444332222 2368888876654443321 11 12223334 44444433
Q ss_pred CCCCCcCceEEEECCCCeeEecc
Q 008611 368 SHAACFNDLHVLDLQTMEWSRPT 390 (559)
Q Consensus 368 ~~~~~~~dv~~~d~~~~~W~~~~ 390 (559)
+.++.+|+.+..+..+.
T Consensus 353 ------~~i~~~Dl~~g~~~~lt 369 (429)
T PRK01742 353 ------DNVVKQDLTSGSTEVLS 369 (429)
T ss_pred ------CCEEEEECCCCCeEEec
Confidence 35888999998887663
No 170
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=74.18 E-value=4.6 Score=31.01 Aligned_cols=6 Identities=50% Similarity=0.578 Sum_probs=2.1
Q ss_pred HHHHHH
Q 008611 519 LKAEKE 524 (559)
Q Consensus 519 l~~e~~ 524 (559)
|+++++
T Consensus 12 Lk~eiq 17 (76)
T PF07334_consen 12 LKEEIQ 17 (76)
T ss_pred HHHHHH
Confidence 333333
No 171
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=74.16 E-value=1e+02 Score=30.95 Aligned_cols=202 Identities=14% Similarity=0.163 Sum_probs=85.5
Q ss_pred eEEecccCCCCCCcccceeEEEECCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCcccee
Q 008611 172 QWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSL 251 (559)
Q Consensus 172 ~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~ 251 (559)
+|+........+.....+++...++..|++|.. .-++.-.-.-.+|++++... +.+-..+..
T Consensus 48 tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~------g~ll~T~DgG~tW~~v~l~~------------~lpgs~~~i 109 (302)
T PF14870_consen 48 TWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEP------GLLLHTTDGGKTWERVPLSS------------KLPGSPFGI 109 (302)
T ss_dssp S-EE-----S-----EEEEEEEETTEEEEEEET------TEEEEESSTTSS-EE----T------------T-SS-EEEE
T ss_pred cccccccCCCccceeeEEEEEecCCceEEEcCC------ceEEEecCCCCCcEEeecCC------------CCCCCeeEE
Confidence 899876421222122333445568899998751 11222222457899986421 223333444
Q ss_pred EEe-CCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEEEE
Q 008611 252 IPW-ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILD 329 (559)
Q Consensus 252 ~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd 329 (559)
..+ ++.++++|.. ..+++=.-.-.+|+.+... ..-.-..+... ++++++.+.. + +-+...|
T Consensus 110 ~~l~~~~~~l~~~~-------G~iy~T~DgG~tW~~~~~~----~~gs~~~~~r~~dG~~vavs~~-G-----~~~~s~~ 172 (302)
T PF14870_consen 110 TALGDGSAELAGDR-------GAIYRTTDGGKTWQAVVSE----TSGSINDITRSSDGRYVAVSSR-G-----NFYSSWD 172 (302)
T ss_dssp EEEETTEEEEEETT---------EEEESSTTSSEEEEE-S--------EEEEEE-TTS-EEEEETT-S-----SEEEEE-
T ss_pred EEcCCCcEEEEcCC-------CcEEEeCCCCCCeeEcccC----CcceeEeEEECCCCcEEEEECc-c-----cEEEEec
Confidence 444 5667776543 2344444445689988631 11222223333 4566655532 1 1133568
Q ss_pred CCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEE--CCCCeeEeccCCCCCCCCccccEEEEE
Q 008611 330 LETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLD--LQTMEWSRPTQQGEIPTPRAGHAGVTI 407 (559)
Q Consensus 330 ~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d--~~~~~W~~~~~~~~~p~~R~~hs~~~~ 407 (559)
+....|..... +..|.-.++....++.|++..- .+ .+..-+ -...+|.+... +.....+++--+.+
T Consensus 173 ~G~~~w~~~~r----~~~~riq~~gf~~~~~lw~~~~-Gg-----~~~~s~~~~~~~~w~~~~~--~~~~~~~~~ld~a~ 240 (302)
T PF14870_consen 173 PGQTTWQPHNR----NSSRRIQSMGFSPDGNLWMLAR-GG-----QIQFSDDPDDGETWSEPII--PIKTNGYGILDLAY 240 (302)
T ss_dssp TT-SS-EEEE------SSS-EEEEEE-TTS-EEEEET-TT-----EEEEEE-TTEEEEE---B---TTSS--S-EEEEEE
T ss_pred CCCccceEEcc----CccceehhceecCCCCEEEEeC-Cc-----EEEEccCCCCccccccccC--CcccCceeeEEEEe
Confidence 88888988863 4667777787777777887751 11 233333 23457877321 11222333333333
Q ss_pred CCceecceeeeeeccCCCcEEEEEcCcC
Q 008611 408 GENWFLGLSLVVSSYSGEDVIVAFGGYN 435 (559)
Q Consensus 408 ~~~~~iG~s~~~~~~~~~~~l~v~GG~~ 435 (559)
.+ .+.+++.||..
T Consensus 241 ~~---------------~~~~wa~gg~G 253 (302)
T PF14870_consen 241 RP---------------PNEIWAVGGSG 253 (302)
T ss_dssp SS---------------SS-EEEEESTT
T ss_pred cC---------------CCCEEEEeCCc
Confidence 22 45899999853
No 172
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=73.43 E-value=18 Score=27.37 Aligned_cols=43 Identities=21% Similarity=0.212 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhH
Q 008611 512 TEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDL 554 (559)
Q Consensus 512 ~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 554 (559)
.|..++-+..-++++...+-+.++++.+|+.++..+..++.++
T Consensus 9 LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 9 LEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444455555555555555555555555555555444
No 173
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=73.31 E-value=12 Score=32.71 Aligned_cols=47 Identities=23% Similarity=0.259 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 512 TEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 512 ~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
.++-+..+++.++.++..++..+.++.+++.++++.++.++++.++.
T Consensus 92 ~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~ 138 (140)
T PRK03947 92 LDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQEA 138 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34446666666666666777777777777777777777776666654
No 174
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=73.19 E-value=13 Score=28.38 Aligned_cols=39 Identities=31% Similarity=0.278 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHHhhhHHHHHHHHHhhhhh
Q 008611 515 LIATLKAEKEELESS-------LSKEKLQSIQLKQDLTEAESQNTD 553 (559)
Q Consensus 515 ~~~~l~~e~~~~~~~-------l~~~~~~~~~l~~~~~~~~~~~~~ 553 (559)
+|+.|+.+.++++.+ ..+...++++|+++-...+.++..
T Consensus 19 ti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~ 64 (72)
T PF06005_consen 19 TIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRS 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555544 444444444455444444444433
No 175
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=73.19 E-value=18 Score=27.72 Aligned_cols=47 Identities=19% Similarity=0.133 Sum_probs=31.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhh
Q 008611 511 TTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKV 557 (559)
Q Consensus 511 ~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ke 557 (559)
..+..|+.+-...+.++..+++.++++..|..+.++++...+.|..+
T Consensus 8 ~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e 54 (72)
T PF06005_consen 8 QLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQE 54 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34555777777777777777777777666666666666666555543
No 176
>smart00284 OLF Olfactomedin-like domains.
Probab=73.03 E-value=95 Score=30.20 Aligned_cols=164 Identities=17% Similarity=0.106 Sum_probs=90.3
Q ss_pred CCCcccceeEEEECCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccce---eEEeCCEE
Q 008611 182 RPKARYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHS---LIPWENKL 258 (559)
Q Consensus 182 ~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~---~~~~~~~l 258 (559)
+|.+-.|...++.++.||.--. ....+.+||+.+.+-..........- ....|-...+++ .++-++-|
T Consensus 70 Lp~~~~GtG~VVYngslYY~~~-----~s~~iiKydL~t~~v~~~~~Lp~a~y----~~~~~Y~~~~~sdiDlAvDE~GL 140 (255)
T smart00284 70 LPHAGQGTGVVVYNGSLYFNKF-----NSHDICRFDLTTETYQKEPLLNGAGY----NNRFPYAWGGFSDIDLAVDENGL 140 (255)
T ss_pred CCCccccccEEEECceEEEEec-----CCccEEEEECCCCcEEEEEecCcccc----ccccccccCCCccEEEEEcCCce
Confidence 5667788888999999998643 24789999999987653332210000 011222222333 33345677
Q ss_pred EEEeccCCCCCCcceEEEEECCCCe----EEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCCc
Q 008611 259 LSIAGHTKDPSEIIQVKVFDLQTCS----WSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMT 334 (559)
Q Consensus 259 yv~GG~~~~~~~~~~v~~yd~~t~~----W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~ 334 (559)
+|+=....+ ...-.+..+|+.+.. |..- .+....+ .+.++.+.||+.-...... ..-.+.||+.+.+
T Consensus 141 WvIYat~~~-~g~ivvSkLnp~tL~ve~tW~T~-----~~k~sa~-naFmvCGvLY~~~s~~~~~--~~I~yayDt~t~~ 211 (255)
T smart00284 141 WVIYATEQN-AGKIVISKLNPATLTIENTWITT-----YNKRSAS-NAFMICGILYVTRSLGSKG--EKVFYAYDTNTGK 211 (255)
T ss_pred EEEEeccCC-CCCEEEEeeCcccceEEEEEEcC-----CCccccc-ccEEEeeEEEEEccCCCCC--cEEEEEEECCCCc
Confidence 777444322 223345678887754 5442 2332222 4555668888885322211 2336889998876
Q ss_pred eEEecCCCCCCCcccccEEEEEc--CCEEEEEc
Q 008611 335 WDEIDAVGVPPSPRSDHAAAVHA--ERYLLIFG 365 (559)
Q Consensus 335 W~~~~~~~~~p~~r~~~~~~~~~--~~~l~v~G 365 (559)
=..+.. ..+.+...+++.-++ ++.||+.-
T Consensus 212 ~~~~~i--~f~n~y~~~s~l~YNP~d~~LY~wd 242 (255)
T smart00284 212 EGHLDI--PFENMYEYISMLDYNPNDRKLYAWN 242 (255)
T ss_pred cceeee--eeccccccceeceeCCCCCeEEEEe
Confidence 443321 123444445555554 56788763
No 177
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=73.02 E-value=82 Score=29.46 Aligned_cols=105 Identities=18% Similarity=0.200 Sum_probs=50.7
Q ss_pred CEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEEC-CEEEEEcCcCCCCCCcCceEEEECCCCc
Q 008611 256 NKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVG-TSLVIFGGEDAKRSLLNDLHILDLETMT 334 (559)
Q Consensus 256 ~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~~~~yd~~t~~ 334 (559)
+.+++.|+.+ ..+..||+.+.+-...-. .....-.++.... +.+++.|+.+ +.+.+||+.+.+
T Consensus 105 ~~~~~~~~~~------~~i~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~~------~~i~i~d~~~~~ 168 (289)
T cd00200 105 GRILSSSSRD------KTIKVWDVETGKCLTTLR----GHTDWVNSVAFSPDGTFVASSSQD------GTIKLWDLRTGK 168 (289)
T ss_pred CCEEEEecCC------CeEEEEECCCcEEEEEec----cCCCcEEEEEEcCcCCEEEEEcCC------CcEEEEEccccc
Confidence 4666666532 358889988654333211 1111112222333 3455544422 358889886443
Q ss_pred eE-EecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCee
Q 008611 335 WD-EIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEW 386 (559)
Q Consensus 335 W~-~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W 386 (559)
-. .+. .....-.++....++..+++|+.+ ..+.+||+.+...
T Consensus 169 ~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~~-----~~i~i~d~~~~~~ 211 (289)
T cd00200 169 CVATLT-----GHTGEVNSVAFSPDGEKLLSSSSD-----GTIKLWDLSTGKC 211 (289)
T ss_pred cceeEe-----cCccccceEEECCCcCEEEEecCC-----CcEEEEECCCCce
Confidence 21 221 111122334444454455565542 4588999876443
No 178
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=73.01 E-value=7.8 Score=34.36 Aligned_cols=30 Identities=17% Similarity=0.251 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 008611 522 EKEELESSLSKEKLQSIQLKQDLTEAESQN 551 (559)
Q Consensus 522 e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 551 (559)
|.+.++.++.+.++++++|+.++..+++++
T Consensus 105 e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~ 134 (161)
T TIGR02894 105 ENERLKNQNESLQKRNEELEKELEKLRQRL 134 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444443333
No 179
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=73.00 E-value=8.6 Score=38.76 Aligned_cols=41 Identities=22% Similarity=0.248 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhh
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYK 556 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~k 556 (559)
+.++.++++.++...++..+++++|+.+.+++++++++++.
T Consensus 45 ~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~ 85 (314)
T PF04111_consen 45 IEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEE 85 (314)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444433
No 180
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=72.95 E-value=9.8 Score=28.82 Aligned_cols=47 Identities=17% Similarity=0.179 Sum_probs=37.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhh
Q 008611 510 ETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYK 556 (559)
Q Consensus 510 ~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~k 556 (559)
...+.....|..|......+|...-.++.+|+.+++.+.++++++..
T Consensus 22 ~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r~ 68 (69)
T PF14197_consen 22 SVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELRA 68 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44455677788888888888999999999999999998888876643
No 181
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=72.91 E-value=8.8 Score=39.75 Aligned_cols=41 Identities=17% Similarity=0.260 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHh
Q 008611 515 LIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLY 555 (559)
Q Consensus 515 ~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 555 (559)
.+.++++++.+++.++.+.+..+.+++++|++.+.++..|+
T Consensus 67 ~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~ 107 (420)
T COG4942 67 QLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALE 107 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Confidence 34444444445555555555555555555555555554443
No 182
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=72.76 E-value=1.5e+02 Score=32.49 Aligned_cols=87 Identities=16% Similarity=0.225 Sum_probs=51.2
Q ss_pred CCCCCccceEEEE---ECCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCC-CCcccccEEEEEcCCEEEEEcCC
Q 008611 292 KPPVSRGGQSVTL---VGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVP-PSPRSDHAAAVHAERYLLIFGGG 367 (559)
Q Consensus 292 ~~p~~r~~~~~~~---~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~-p~~r~~~~~~~~~~~~l~v~GG~ 367 (559)
++|..+-..+... -++++++.- . ...+++.++.++.+..++...... ..+-..+-++.-.+++|-+.++
T Consensus 423 ~~~~~~~~a~~i~ftid~~k~~~~s-~-----~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t- 495 (691)
T KOG2048|consen 423 DVPLALLDASAISFTIDKNKLFLVS-K-----NIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIST- 495 (691)
T ss_pred cchhhhccceeeEEEecCceEEEEe-c-----ccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEec-
Confidence 4555554433332 256777665 1 134688888888888776543211 1222233333334677888875
Q ss_pred CCCCCcCceEEEECCCCeeEecc
Q 008611 368 SHAACFNDLHVLDLQTMEWSRPT 390 (559)
Q Consensus 368 ~~~~~~~dv~~~d~~~~~W~~~~ 390 (559)
...|++||+.+.+-+.+.
T Consensus 496 -----~g~I~v~nl~~~~~~~l~ 513 (691)
T KOG2048|consen 496 -----RGQIFVYNLETLESHLLK 513 (691)
T ss_pred -----cceEEEEEcccceeecch
Confidence 357999999998877663
No 183
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=72.65 E-value=1.2e+02 Score=31.19 Aligned_cols=153 Identities=15% Similarity=0.119 Sum_probs=80.9
Q ss_pred EEECCEEEEEccCCCCcccCcEEEEEcCCCe--EEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCCCC
Q 008611 192 AVVQDKMYIYGGNHNGRYLSDMHILDLRSWA--WSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPS 269 (559)
Q Consensus 192 ~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~ 269 (559)
+..++++|+... . ..++.+|+.++. |+...... ..........-+|+||+- ....
T Consensus 65 ~~~dg~v~~~~~--~----G~i~A~d~~~g~~~W~~~~~~~-------------~~~~~~~~~~~~G~i~~g-~~~g--- 121 (370)
T COG1520 65 ADGDGTVYVGTR--D----GNIFALNPDTGLVKWSYPLLGA-------------VAQLSGPILGSDGKIYVG-SWDG--- 121 (370)
T ss_pred EeeCCeEEEecC--C----CcEEEEeCCCCcEEecccCcCc-------------ceeccCceEEeCCeEEEe-cccc---
Confidence 666889998721 1 179999999987 87653310 001111111226776554 3322
Q ss_pred CcceEEEEECCCC--eEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCC--CceEEecCCCCCC
Q 008611 270 EIIQVKVFDLQTC--SWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLET--MTWDEIDAVGVPP 345 (559)
Q Consensus 270 ~~~~v~~yd~~t~--~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t--~~W~~~~~~~~~p 345 (559)
.+++||..++ .|+.-... . ++..-..+..++.+|+-- ..+.++++|..+ ..|..-...+ .
T Consensus 122 ---~~y~ld~~~G~~~W~~~~~~---~-~~~~~~~v~~~~~v~~~s-------~~g~~~al~~~tG~~~W~~~~~~~--~ 185 (370)
T COG1520 122 ---KLYALDASTGTLVWSRNVGG---S-PYYASPPVVGDGTVYVGT-------DDGHLYALNADTGTLKWTYETPAP--L 185 (370)
T ss_pred ---eEEEEECCCCcEEEEEecCC---C-eEEecCcEEcCcEEEEec-------CCCeEEEEEccCCcEEEEEecCCc--c
Confidence 7999999654 58877532 1 333333344445555532 124588888774 4677443221 1
Q ss_pred CcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCC--eeEe
Q 008611 346 SPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTM--EWSR 388 (559)
Q Consensus 346 ~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~--~W~~ 388 (559)
..+.....+ +.++ ++++|... . ...++.+|+.+. .|..
T Consensus 186 ~~~~~~~~~-~~~~-~vy~~~~~--~-~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 186 SLSIYGSPA-IASG-TVYVGSDG--Y-DGILYALNAEDGTLKWSQ 225 (370)
T ss_pred ccccccCce-eecc-eEEEecCC--C-cceEEEEEccCCcEeeee
Confidence 222222222 4456 44444332 1 236999999765 5774
No 184
>PLN00181 protein SPA1-RELATED; Provisional
Probab=72.54 E-value=1.9e+02 Score=33.38 Aligned_cols=60 Identities=20% Similarity=0.277 Sum_probs=33.9
Q ss_pred CCEEEEEeccCCCCCCcceEEEEECCCCeEE-EeccCCCCCCCccceEEEEE---CCEEEEEcCcCCCCCCcCceEEEEC
Q 008611 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWS-TLKTYGKPPVSRGGQSVTLV---GTSLVIFGGEDAKRSLLNDLHILDL 330 (559)
Q Consensus 255 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~-~~~~~g~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~yd~ 330 (559)
++.+++.||.++ .+.+||+.+..-. .+.. .. ...++.+ ++.++++|+.+ +.+.+||+
T Consensus 587 ~~~~L~Sgs~Dg------~v~iWd~~~~~~~~~~~~----~~---~v~~v~~~~~~g~~latgs~d------g~I~iwD~ 647 (793)
T PLN00181 587 DPTLLASGSDDG------SVKLWSINQGVSIGTIKT----KA---NICCVQFPSESGRSLAFGSAD------HKVYYYDL 647 (793)
T ss_pred CCCEEEEEcCCC------EEEEEECCCCcEEEEEec----CC---CeEEEEEeCCCCCEEEEEeCC------CeEEEEEC
Confidence 467777787653 4788888765422 2211 11 1112222 45677777754 35889998
Q ss_pred CCC
Q 008611 331 ETM 333 (559)
Q Consensus 331 ~t~ 333 (559)
.+.
T Consensus 648 ~~~ 650 (793)
T PLN00181 648 RNP 650 (793)
T ss_pred CCC
Confidence 654
No 185
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.29 E-value=4.3 Score=39.31 Aligned_cols=19 Identities=21% Similarity=0.216 Sum_probs=7.0
Q ss_pred HHHHHHHHhhhHHHHHHHH
Q 008611 529 SLSKEKLQSIQLKQDLTEA 547 (559)
Q Consensus 529 ~l~~~~~~~~~l~~~~~~~ 547 (559)
+|++.|+|+...++||+.+
T Consensus 68 eL~~rqeEL~Rke~ELdRR 86 (313)
T KOG3088|consen 68 ELLKKQEELRRKEQELDRR 86 (313)
T ss_pred HHHHHHHHHHHHHHHHhHH
Confidence 3333333333333333333
No 186
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=71.93 E-value=13 Score=30.64 Aligned_cols=45 Identities=20% Similarity=0.222 Sum_probs=33.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHh
Q 008611 511 TTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLY 555 (559)
Q Consensus 511 ~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 555 (559)
.....+..|...++.++..+.....+...++.++.+++.++.++.
T Consensus 60 ~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 60 EKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445557777777777777777777777777777777777776654
No 187
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=71.73 E-value=7.2 Score=41.27 Aligned_cols=12 Identities=25% Similarity=0.180 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 008611 516 IATLKAEKEELE 527 (559)
Q Consensus 516 ~~~l~~e~~~~~ 527 (559)
|+++++++.+.+
T Consensus 116 iEelk~~i~~~q 127 (907)
T KOG2264|consen 116 IEELKRLIPQKQ 127 (907)
T ss_pred HHHHHHHHHHhH
Confidence 333333333333
No 188
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=71.26 E-value=11 Score=28.48 Aligned_cols=36 Identities=25% Similarity=0.262 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 008611 513 EHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAE 548 (559)
Q Consensus 513 ~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~ 548 (559)
+..+++|.+.+.+-+.++...++++..|..++.+++
T Consensus 17 e~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 17 EDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444554444444455555555555544444443
No 189
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=71.17 E-value=11 Score=29.12 Aligned_cols=32 Identities=22% Similarity=0.318 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEA 547 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~ 547 (559)
..+++.++++++.++++.++++.+|+++++.+
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666666666666666666666666666
No 190
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=70.86 E-value=19 Score=25.67 Aligned_cols=33 Identities=6% Similarity=0.058 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhh
Q 008611 525 ELESSLSKEKLQSIQLKQDLTEAESQNTDLYKV 557 (559)
Q Consensus 525 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ke 557 (559)
......+..+.++..|+.++..++.+++.|++|
T Consensus 22 rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 22 RKKQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333344444455555555555555555555543
No 191
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=70.72 E-value=6.8 Score=39.80 Aligned_cols=37 Identities=22% Similarity=0.268 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhh
Q 008611 521 AEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKV 557 (559)
Q Consensus 521 ~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ke 557 (559)
.+++..+..+.+.+.++++++.++++...+.+++..|
T Consensus 223 ~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~e 259 (325)
T PF08317_consen 223 EEIEAKKKELAELQEELEELEEKIEELEEQKQELLAE 259 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444444444444444444
No 192
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=70.51 E-value=1.4e+02 Score=31.18 Aligned_cols=160 Identities=11% Similarity=0.124 Sum_probs=75.6
Q ss_pred eEEecccCCCCCCcc--cceeEEEECCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccc
Q 008611 172 QWIAPPISGQRPKAR--YEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGH 249 (559)
Q Consensus 172 ~W~~~~~~g~~p~~r--~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~ 249 (559)
+|+.....+.....+ ...++...++..|++|-. + -++.=.-.-.+|+.+.... ..|.. .+
T Consensus 121 tW~~~~~~~~~~~~~~~~l~~v~f~~~~g~~vG~~-G-----~il~T~DgG~tW~~~~~~~----------~~p~~--~~ 182 (398)
T PLN00033 121 TWVPRSIPSAEDEDFNYRFNSISFKGKEGWIIGKP-A-----ILLHTSDGGETWERIPLSP----------KLPGE--PV 182 (398)
T ss_pred CceECccCcccccccccceeeeEEECCEEEEEcCc-e-----EEEEEcCCCCCceECcccc----------CCCCC--ce
Confidence 899754211111111 234555567888888641 1 1222222347899875421 11222 23
Q ss_pred eeEEe-CCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCC-CCCCCc--------------cceEEEEE-CCEEEEE
Q 008611 250 SLIPW-ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYG-KPPVSR--------------GGQSVTLV-GTSLVIF 312 (559)
Q Consensus 250 ~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g-~~p~~r--------------~~~~~~~~-~~~lyv~ 312 (559)
....+ ++.++++|... .+++-+-.-.+|+.+.... +.|..+ ..+++... ++.++++
T Consensus 183 ~i~~~~~~~~~ivg~~G-------~v~~S~D~G~tW~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~v 255 (398)
T PLN00033 183 LIKATGPKSAEMVTDEG-------AIYVTSNAGRNWKAAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAV 255 (398)
T ss_pred EEEEECCCceEEEeccc-------eEEEECCCCCCceEcccccccccccccccccccccceeccceeeEEEcCCCCEEEE
Confidence 33334 45677777431 2444444456898862110 111111 11122222 3345555
Q ss_pred cCcCCCCCCcCceEEE-ECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCC
Q 008611 313 GGEDAKRSLLNDLHIL-DLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGG 367 (559)
Q Consensus 313 GG~~~~~~~~~~~~~y-d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~ 367 (559)
|-. ..+++- |.....|+.+.. |.++...++....++.++++|..
T Consensus 256 g~~-------G~~~~s~d~G~~~W~~~~~----~~~~~l~~v~~~~dg~l~l~g~~ 300 (398)
T PLN00033 256 SSR-------GNFYLTWEPGQPYWQPHNR----ASARRIQNMGWRADGGLWLLTRG 300 (398)
T ss_pred ECC-------ccEEEecCCCCcceEEecC----CCccceeeeeEcCCCCEEEEeCC
Confidence 532 224433 333334888863 34455555555566778888753
No 193
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=70.39 E-value=15 Score=28.33 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 008611 515 LIATLKAEKEELESSLSKEKLQ 536 (559)
Q Consensus 515 ~~~~l~~e~~~~~~~l~~~~~~ 536 (559)
+|+-|+-|+++++.+.....++
T Consensus 19 tI~LLqmEieELKekn~~L~~e 40 (79)
T PRK15422 19 TITLLQMEIEELKEKNNSLSQE 40 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555444433333
No 194
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=70.30 E-value=16 Score=32.12 Aligned_cols=44 Identities=27% Similarity=0.342 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHh
Q 008611 512 TEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLY 555 (559)
Q Consensus 512 ~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 555 (559)
.++-+..|++.+++++..++..++.+.+|.+.+.+.+++++++.
T Consensus 92 ~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~ 135 (145)
T COG1730 92 ADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQ 135 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666666666666666666666655555555554443
No 195
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=70.18 E-value=8.8 Score=37.64 Aligned_cols=39 Identities=13% Similarity=0.145 Sum_probs=15.7
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 008611 508 HPETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTE 546 (559)
Q Consensus 508 ~~~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~ 546 (559)
+++..++++.+|..++|+.+.++++.+++-..+-.+|++
T Consensus 62 ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 62 QLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444433333334433
No 196
>PRK04325 hypothetical protein; Provisional
Probab=69.89 E-value=13 Score=28.57 Aligned_cols=28 Identities=14% Similarity=0.158 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 008611 524 EELESSLSKEKLQSIQLKQDLTEAESQN 551 (559)
Q Consensus 524 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 551 (559)
+++-..+-+.++++..|+.++..+..++
T Consensus 26 e~LN~vv~~Qq~~I~~L~~ql~~L~~rl 53 (74)
T PRK04325 26 DGLNATVARQQQTLDLLQAQLRLLYQQM 53 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444333333
No 197
>PRK02119 hypothetical protein; Provisional
Probab=69.86 E-value=13 Score=28.49 Aligned_cols=31 Identities=16% Similarity=0.160 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 008611 521 AEKEELESSLSKEKLQSIQLKQDLTEAESQN 551 (559)
Q Consensus 521 ~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 551 (559)
.-++++-..+-+.++++..|+.++..+..++
T Consensus 23 ~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl 53 (73)
T PRK02119 23 NLLEELNQALIEQQFVIDKMQVQLRYMANKL 53 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444444
No 198
>PRK02119 hypothetical protein; Provisional
Probab=69.53 E-value=18 Score=27.68 Aligned_cols=34 Identities=18% Similarity=0.214 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 008611 514 HLIATLKAEKEELESSLSKEKLQSIQLKQDLTEA 547 (559)
Q Consensus 514 ~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~ 547 (559)
+.|.+|.+.+.+-++++...++++..|.+++.+.
T Consensus 23 ~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 23 NLLEELNQALIEQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455555555555555555555555555555444
No 199
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=69.47 E-value=5.5 Score=44.66 Aligned_cols=44 Identities=23% Similarity=0.245 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 515 LIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 515 ~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
..++|+..+..+.+..+...+.+++||+++.+.+.+-+.+|+||
T Consensus 468 ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL 511 (697)
T PF09726_consen 468 ENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQL 511 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444445555555555555556666665
No 200
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=68.87 E-value=17 Score=30.63 Aligned_cols=42 Identities=31% Similarity=0.318 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhh
Q 008611 515 LIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYK 556 (559)
Q Consensus 515 ~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~k 556 (559)
.++++-.+.++++++++..-.+.++++.++.+.+.-+.++++
T Consensus 7 ~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~ 48 (119)
T COG1382 7 EVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEK 48 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456667777788888888888888888888887777777654
No 201
>smart00338 BRLZ basic region leucin zipper.
Probab=68.57 E-value=18 Score=26.84 Aligned_cols=39 Identities=23% Similarity=0.289 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 008611 513 EHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQN 551 (559)
Q Consensus 513 ~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 551 (559)
...+..|..+.+.++.+.+....++..|+.++..+..++
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666666666666666666666666666666665554
No 202
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=68.51 E-value=6 Score=30.27 Aligned_cols=46 Identities=17% Similarity=0.162 Sum_probs=36.5
Q ss_pred cCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Q 008611 505 ISKHPETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQ 550 (559)
Q Consensus 505 ~~~~~~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~ 550 (559)
+..++.+.+++|..|..-..+++.+|.....-..+|+.+....+..
T Consensus 10 L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~~ 55 (76)
T PF11544_consen 10 LKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQRS 55 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455677788888888888888888888888888888888777764
No 203
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=68.51 E-value=15 Score=33.39 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=9.2
Q ss_pred HhhhHHHHHHHHHhhhhhHhh
Q 008611 536 QSIQLKQDLTEAESQNTDLYK 556 (559)
Q Consensus 536 ~~~~l~~~~~~~~~~~~~~~k 556 (559)
+.++++.++++++.+++..++
T Consensus 154 ~~~e~~~~l~~l~~ei~~~~~ 174 (176)
T PF12999_consen 154 KREELEKKLEELEKEIQAAKQ 174 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 333444444444444444443
No 204
>PRK00295 hypothetical protein; Provisional
Probab=68.36 E-value=23 Score=26.78 Aligned_cols=31 Identities=10% Similarity=0.122 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhhhh
Q 008611 522 EKEELESSLSKEKLQSIQLKQDLTEAESQNT 552 (559)
Q Consensus 522 e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~ 552 (559)
-++++-..+-+.++++..|+.++..+..++.
T Consensus 20 tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~ 50 (68)
T PRK00295 20 TIQALNDVLVEQQRVIERLQLQMAALIKRQE 50 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444444433
No 205
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=68.24 E-value=21 Score=27.11 Aligned_cols=45 Identities=9% Similarity=0.159 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 514 HLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 514 ~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
...++.+.....++..+...+++...|..++..+.+++..|..++
T Consensus 21 ~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql 65 (70)
T PF04899_consen 21 KQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQL 65 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666677777777788888888888888888888887776665
No 206
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=68.18 E-value=12 Score=33.79 Aligned_cols=38 Identities=32% Similarity=0.456 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 521 AEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 521 ~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
.|++++...|.+.++++.-|++-|+.+++...||.|.|
T Consensus 44 ~Ekeelr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKL 81 (208)
T KOG4010|consen 44 EEKEELRTELAKVEEEIVTLRQVLAAKERHAAELKRKL 81 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455666666666666667777777777766666654
No 207
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=68.14 E-value=15 Score=30.47 Aligned_cols=34 Identities=12% Similarity=0.105 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAES 549 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~ 549 (559)
..+++++++++++++++.++++++|+.+++.++.
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4455555666666666666666666666665544
No 208
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=68.10 E-value=18 Score=30.21 Aligned_cols=45 Identities=27% Similarity=0.335 Sum_probs=35.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhH
Q 008611 510 ETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDL 554 (559)
Q Consensus 510 ~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 554 (559)
...++.+..|++.++.++..+.....+...++.++.+.+.+++++
T Consensus 63 ~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 63 TDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666788888888888888888888888888888888887665
No 209
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=68.10 E-value=14 Score=30.73 Aligned_cols=39 Identities=21% Similarity=0.278 Sum_probs=20.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q 008611 511 TTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAES 549 (559)
Q Consensus 511 ~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~ 549 (559)
..-..+.+|++++.++-+...+.+.++++|+..+.+.++
T Consensus 19 ~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 19 QLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333445555555555555555555555555555554433
No 210
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=67.88 E-value=13 Score=31.30 Aligned_cols=63 Identities=10% Similarity=0.112 Sum_probs=39.6
Q ss_pred ecccCCCCcccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhhC
Q 008611 495 VVDNVDSEPLISKHPETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVIA 559 (559)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kelq 559 (559)
.|.+++.......-..+.+..|.+.+.++.+.+..|++.+..... .+|...++.|++...||+
T Consensus 51 AL~~v~~~Ctd~~l~~e~q~ki~~~~~kV~ere~eL~eA~~~G~~--~KI~K~~~KL~ea~~eL~ 113 (115)
T PF06476_consen 51 ALEEVKAHCTDEGLKAERQQKIAEKQQKVAEREAELKEAQAKGDS--DKIAKRQKKLAEAKAELK 113 (115)
T ss_pred HHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHh
Confidence 344443333322233556667888888888888888888776554 566666677766666664
No 211
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=67.67 E-value=9.2 Score=28.08 Aligned_cols=7 Identities=29% Similarity=0.354 Sum_probs=2.5
Q ss_pred HHHHHhh
Q 008611 544 LTEAESQ 550 (559)
Q Consensus 544 ~~~~~~~ 550 (559)
.+..|.+
T Consensus 48 a~~ae~~ 54 (60)
T PF11471_consen 48 AQAAEAR 54 (60)
T ss_pred HHHHHHH
Confidence 3333333
No 212
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=67.12 E-value=1.5e+02 Score=30.14 Aligned_cols=163 Identities=15% Similarity=0.153 Sum_probs=77.6
Q ss_pred CCEEEEEccCCCCcccCcEEEE--EcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCC-EEEEEeccCCCCCCc
Q 008611 195 QDKMYIYGGNHNGRYLSDMHIL--DLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWEN-KLLSIAGHTKDPSEI 271 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~y--d~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~ 271 (559)
++.||+..... .....+..| +..+++.+.+.... .....-+|.++.-++ .||+. -+. .
T Consensus 48 ~~~LY~~~e~~--~~~g~v~~~~i~~~~g~L~~~~~~~-----------~~g~~p~~i~~~~~g~~l~va-ny~-----~ 108 (345)
T PF10282_consen 48 GRRLYVVNEGS--GDSGGVSSYRIDPDTGTLTLLNSVP-----------SGGSSPCHIAVDPDGRFLYVA-NYG-----G 108 (345)
T ss_dssp SSEEEEEETTS--STTTEEEEEEEETTTTEEEEEEEEE-----------ESSSCEEEEEECTTSSEEEEE-ETT-----T
T ss_pred CCEEEEEEccc--cCCCCEEEEEECCCcceeEEeeeec-----------cCCCCcEEEEEecCCCEEEEE-Ecc-----C
Confidence 56788886532 122344444 44557888776542 011111232222244 45554 332 2
Q ss_pred ceEEEEECCCC-eEEEec------cCCCCC---CCccceEEEEE--CCEEEEEcCcCCCCCCcCceEEEECCCCc--eEE
Q 008611 272 IQVKVFDLQTC-SWSTLK------TYGKPP---VSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMT--WDE 337 (559)
Q Consensus 272 ~~v~~yd~~t~-~W~~~~------~~g~~p---~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~ 337 (559)
..+.+|++... .-.... ..|+.| ..-.-|.+... ++.+|+..= -.+.|++|+++... ...
T Consensus 109 g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dl------G~D~v~~~~~~~~~~~l~~ 182 (345)
T PF10282_consen 109 GSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDL------GADRVYVYDIDDDTGKLTP 182 (345)
T ss_dssp TEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEET------TTTEEEEEEE-TTS-TEEE
T ss_pred CeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEec------CCCEEEEEEEeCCCceEEE
Confidence 35777877763 222221 011111 22333444444 346777531 14668888887665 544
Q ss_pred ecCCC--CCCCcccccEEEEE-cCCEEEEEcCCCCCCCcCceEEEECC--CCeeEecc
Q 008611 338 IDAVG--VPPSPRSDHAAAVH-AERYLLIFGGGSHAACFNDLHVLDLQ--TMEWSRPT 390 (559)
Q Consensus 338 ~~~~~--~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~dv~~~d~~--~~~W~~~~ 390 (559)
..... ..-.|| | +++. ++.++||....+ +.|.+|+.. +..++.+.
T Consensus 183 ~~~~~~~~G~GPR--h-~~f~pdg~~~Yv~~e~s-----~~v~v~~~~~~~g~~~~~~ 232 (345)
T PF10282_consen 183 VDSIKVPPGSGPR--H-LAFSPDGKYAYVVNELS-----NTVSVFDYDPSDGSLTEIQ 232 (345)
T ss_dssp EEEEECSTTSSEE--E-EEE-TTSSEEEEEETTT-----TEEEEEEEETTTTEEEEEE
T ss_pred eeccccccCCCCc--E-EEEcCCcCEEEEecCCC-----CcEEEEeecccCCceeEEE
Confidence 32211 111233 3 3343 346899987643 556666655 66666653
No 213
>PRK00295 hypothetical protein; Provisional
Probab=67.09 E-value=19 Score=27.17 Aligned_cols=39 Identities=18% Similarity=0.141 Sum_probs=26.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 008611 510 ETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAE 548 (559)
Q Consensus 510 ~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~ 548 (559)
.--+++|.+|.+.+.+-+.++...+.++..|..++.+.+
T Consensus 15 a~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 15 AFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334455677777777777777777777777777776665
No 214
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=67.06 E-value=16 Score=27.80 Aligned_cols=41 Identities=10% Similarity=0.200 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhH
Q 008611 514 HLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDL 554 (559)
Q Consensus 514 ~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 554 (559)
+.+.+++..+...+..+...++....++.++.....++.++
T Consensus 6 e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I 46 (71)
T PF10779_consen 6 EKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKI 46 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444443
No 215
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=67.02 E-value=17 Score=32.32 Aligned_cols=40 Identities=23% Similarity=0.228 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhH
Q 008611 515 LIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDL 554 (559)
Q Consensus 515 ~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 554 (559)
..+.|+.++++++.+++..+.++++|++++...++.++.|
T Consensus 105 e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L 144 (161)
T TIGR02894 105 ENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTL 144 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555544433
No 216
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=67.01 E-value=11 Score=39.92 Aligned_cols=50 Identities=12% Similarity=0.239 Sum_probs=40.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhhC
Q 008611 510 ETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVIA 559 (559)
Q Consensus 510 ~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kelq 559 (559)
.+.+..+..|++.++...++|++.|..+.+|.+++.+.+..+++|+.||+
T Consensus 20 ~~~~~~v~~l~~~v~~kd~elr~rqt~~~~l~~~~~~~~~~i~~ltnel~ 69 (732)
T KOG0614|consen 20 RELQNLVPQLEEAVQRKDAELRQRQTILEELIKEISKLEGEIAKLTNELD 69 (732)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 45566777888888888888888888888888888888888888888874
No 217
>PRK00736 hypothetical protein; Provisional
Probab=66.81 E-value=30 Score=26.11 Aligned_cols=29 Identities=14% Similarity=0.136 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLKQDL 544 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~~~~ 544 (559)
|.+|.+.+.+-+.++...++++..|..++
T Consensus 21 ie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl 49 (68)
T PRK00736 21 IEELSDQLAEQWKTVEQMRKKLDALTERF 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444443333333333333333333333
No 218
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=66.57 E-value=45 Score=35.78 Aligned_cols=87 Identities=16% Similarity=0.127 Sum_probs=52.2
Q ss_pred ceEEecccCC----CCCCcccceeEEEE--CCEEEEEccCCCCcccCcEEEEEcCCCeEEEe-eeccccCCCCCCCCCCC
Q 008611 171 DQWIAPPISG----QRPKARYEHGAAVV--QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKI-QAKAVAESTESPSPALL 243 (559)
Q Consensus 171 ~~W~~~~~~g----~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~-~~~~~~~~~~~~~~~~p 243 (559)
|+|..+...+ .+..|+.|.-++.. .-.||+.|- -++||+||+..+.|-.- ...
T Consensus 115 DR~IefHak~G~hy~~RIP~~GRDm~y~~~scDly~~gs------g~evYRlNLEqGrfL~P~~~~-------------- 174 (703)
T KOG2321|consen 115 DRTIEFHAKYGRHYRTRIPKFGRDMKYHKPSCDLYLVGS------GSEVYRLNLEQGRFLNPFETD-------------- 174 (703)
T ss_pred CceeeehhhcCeeeeeecCcCCccccccCCCccEEEeec------CcceEEEEccccccccccccc--------------
Confidence 4666554332 23445666666554 567888874 37899999999998532 221
Q ss_pred CCCccceeEEeCCEEEEEeccCCCCCCcceEEEEECCCCe
Q 008611 244 TPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCS 283 (559)
Q Consensus 244 ~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~ 283 (559)
.+...+..+.--+.|+++||..+ .|+.+|+.+.+
T Consensus 175 ~~~lN~v~in~~hgLla~Gt~~g------~VEfwDpR~ks 208 (703)
T KOG2321|consen 175 SGELNVVSINEEHGLLACGTEDG------VVEFWDPRDKS 208 (703)
T ss_pred cccceeeeecCccceEEecccCc------eEEEecchhhh
Confidence 12222222222457889998754 37777776653
No 219
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=66.43 E-value=24 Score=26.06 Aligned_cols=39 Identities=31% Similarity=0.368 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Q 008611 512 TEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQ 550 (559)
Q Consensus 512 ~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~ 550 (559)
....+.+|+.....++........++..|+.++..+..+
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 24 KKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344566666666666666666666666666666665544
No 220
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=66.00 E-value=15 Score=33.28 Aligned_cols=28 Identities=18% Similarity=0.206 Sum_probs=13.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 008611 509 PETTEHLIATLKAEKEELESSLSKEKLQ 536 (559)
Q Consensus 509 ~~~~~~~~~~l~~e~~~~~~~l~~~~~~ 536 (559)
+...+..+.+|+.++.+++......+.+
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~e 101 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAE 101 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555544444443
No 221
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=65.93 E-value=7.4 Score=41.79 Aligned_cols=9 Identities=11% Similarity=0.172 Sum_probs=4.4
Q ss_pred CCEEEEEcc
Q 008611 195 QDKMYIYGG 203 (559)
Q Consensus 195 ~~~lyv~GG 203 (559)
++.++.-++
T Consensus 28 dg~~~~k~~ 36 (652)
T COG2433 28 DGEIVEKGE 36 (652)
T ss_pred cCcEEeehh
Confidence 445555444
No 222
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=65.85 E-value=15 Score=35.70 Aligned_cols=46 Identities=22% Similarity=0.126 Sum_probs=27.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHh
Q 008611 510 ETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLY 555 (559)
Q Consensus 510 ~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 555 (559)
.+..+.+..+++|++.++...++.+..+..++++++++++++++++
T Consensus 52 ~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 52 QELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344456666666666666666666666666666666666664443
No 223
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=65.11 E-value=1.5e+02 Score=29.25 Aligned_cols=190 Identities=10% Similarity=-0.032 Sum_probs=101.0
Q ss_pred CcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe-CCEEEEEeccCCCCCCcceEEEEECCCCeEEEecc
Q 008611 211 SDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKT 289 (559)
Q Consensus 211 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~ 289 (559)
..+=.+|+.|++-+.++- +..-.-|..+.- ++..++.-+ .+.|-++|+++..-++.+.
T Consensus 83 gaiGhLdP~tGev~~ypL--------------g~Ga~Phgiv~gpdg~~Witd~-------~~aI~R~dpkt~evt~f~l 141 (353)
T COG4257 83 GAIGHLDPATGEVETYPL--------------GSGASPHGIVVGPDGSAWITDT-------GLAIGRLDPKTLEVTRFPL 141 (353)
T ss_pred ccceecCCCCCceEEEec--------------CCCCCCceEEECCCCCeeEecC-------cceeEEecCcccceEEeec
Confidence 346678899988887743 233334444443 455666522 2268899999998888864
Q ss_pred CCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCC
Q 008611 290 YGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGG 367 (559)
Q Consensus 290 ~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~ 367 (559)
.++++..-.. ..++ .+.|+..|-....+ ++|+.++.-+... .|.+-.-+.+|+..++.+|+.-=.
T Consensus 142 p~~~a~~nle--t~vfD~~G~lWFt~q~G~yG-------rLdPa~~~i~vfp----aPqG~gpyGi~atpdGsvwyasla 208 (353)
T COG4257 142 PLEHADANLE--TAVFDPWGNLWFTGQIGAYG-------RLDPARNVISVFP----APQGGGPYGICATPDGSVWYASLA 208 (353)
T ss_pred ccccCCCccc--ceeeCCCccEEEeeccccce-------ecCcccCceeeec----cCCCCCCcceEECCCCcEEEEecc
Confidence 3333322222 2333 34677666432211 4566665544432 133344456667667778875211
Q ss_pred CCCCCcCceEEEECCCCeeEeccCCCCCCCCccccEEEEECCceecceeeeeeccCCCcEEEEEcCcCCCCcccEEEEeC
Q 008611 368 SHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKP 447 (559)
Q Consensus 368 ~~~~~~~dv~~~d~~~~~W~~~~~~~~~p~~R~~hs~~~~~~~~~iG~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~~d~ 447 (559)
-|-|-++|+.+..=+.+.. |.+...-+=-++.+ ...++.+- ......+++|||
T Consensus 209 -----gnaiaridp~~~~aev~p~----P~~~~~gsRriwsd--------------pig~~wit----twg~g~l~rfdP 261 (353)
T COG4257 209 -----GNAIARIDPFAGHAEVVPQ----PNALKAGSRRIWSD--------------PIGRAWIT----TWGTGSLHRFDP 261 (353)
T ss_pred -----ccceEEcccccCCcceecC----CCcccccccccccC--------------ccCcEEEe----ccCCceeeEeCc
Confidence 1346677777765444421 22211000001100 01133332 112347899999
Q ss_pred CCcceecccCCCCC
Q 008611 448 SHKSTLSSKMIETP 461 (559)
Q Consensus 448 ~~~~~~~~~~~~~~ 461 (559)
.+..|..-+++...
T Consensus 262 s~~sW~eypLPgs~ 275 (353)
T COG4257 262 SVTSWIEYPLPGSK 275 (353)
T ss_pred ccccceeeeCCCCC
Confidence 99999888887543
No 224
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=65.05 E-value=3.8 Score=42.37 Aligned_cols=42 Identities=26% Similarity=0.292 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhh
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKV 557 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ke 557 (559)
.+.|++++.+++..+.....++.+.+.++.+.++.|+++++.
T Consensus 61 ~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~ 102 (420)
T COG4942 61 RAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNAR 102 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHH
Confidence 333333333333333333333444444444444444444443
No 225
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=64.83 E-value=9.6 Score=38.32 Aligned_cols=41 Identities=22% Similarity=0.192 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhh
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYK 556 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~k 556 (559)
+...++++++++.++++....++....+..+.+.+++++++
T Consensus 220 i~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 220 IMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444444444443
No 226
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=64.46 E-value=14 Score=35.72 Aligned_cols=30 Identities=27% Similarity=0.193 Sum_probs=21.0
Q ss_pred HHHHHHHhhhHHHHHHHHHhhhhhHhhhhC
Q 008611 530 LSKEKLQSIQLKQDLTEAESQNTDLYKVIA 559 (559)
Q Consensus 530 l~~~~~~~~~l~~~~~~~~~~~~~~~kelq 559 (559)
|.+++++++||+|-++-+...|.+..|=||
T Consensus 119 LKEARkEIkQLkQvieTmrssL~ekDkGiQ 148 (305)
T PF15290_consen 119 LKEARKEIKQLKQVIETMRSSLAEKDKGIQ 148 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchhhhhHH
Confidence 566777788888777777777766655444
No 227
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=64.41 E-value=14 Score=34.58 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQN 551 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 551 (559)
...|+.++++.+..|+..+.+...|+.|.++...++
T Consensus 160 ~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~Ey 195 (216)
T KOG1962|consen 160 LEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEY 195 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH
Confidence 444445555555555555555555555555544444
No 228
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=64.38 E-value=21 Score=29.79 Aligned_cols=38 Identities=21% Similarity=0.222 Sum_probs=23.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 008611 510 ETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEA 547 (559)
Q Consensus 510 ~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~ 547 (559)
...-..+.+|++++.++-+...+.+.++++|+..+++.
T Consensus 18 ~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 18 GVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444566666666666666666666666666666654
No 229
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=64.26 E-value=8.1 Score=28.36 Aligned_cols=27 Identities=15% Similarity=0.178 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008611 512 TEHLIATLKAEKEELESSLSKEKLQSI 538 (559)
Q Consensus 512 ~~~~~~~l~~e~~~~~~~l~~~~~~~~ 538 (559)
.|+.+..|++.+++.|++++..+.+.+
T Consensus 30 iEqRLa~LE~rL~~ae~ra~~ae~~~~ 56 (60)
T PF11471_consen 30 IEQRLAALEQRLQAAEQRAQAAEARAK 56 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433
No 230
>PRK04406 hypothetical protein; Provisional
Probab=64.02 E-value=26 Score=27.07 Aligned_cols=33 Identities=12% Similarity=0.053 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 008611 515 LIATLKAEKEELESSLSKEKLQSIQLKQDLTEA 547 (559)
Q Consensus 515 ~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~ 547 (559)
.|.+|.+.+.+-+.++...+.++..|.+++.+.
T Consensus 26 tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 26 TIEELNDALSQQQLLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444444444444444444444444443
No 231
>KOG3501 consensus Molecular chaperone Prefoldin, subunit 1 [Posttranslational modification, protein turnover, chaperones]
Probab=63.57 E-value=34 Score=27.86 Aligned_cols=48 Identities=17% Similarity=0.233 Sum_probs=39.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhh
Q 008611 510 ETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKV 557 (559)
Q Consensus 510 ~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ke 557 (559)
..+...+.++..++...++.++..|+.-.=|+..+.++|+-|.++-+.
T Consensus 63 ~dk~a~~s~leak~k~see~IeaLqkkK~YlEk~v~eaE~nLrellqs 110 (114)
T KOG3501|consen 63 SDKAAVRSHLEAKMKSSEEKIEALQKKKTYLEKTVSEAEQNLRELLQS 110 (114)
T ss_pred CcHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566788888888888888888888888999999999998887654
No 232
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=63.42 E-value=1.1e+02 Score=30.73 Aligned_cols=98 Identities=13% Similarity=0.130 Sum_probs=61.1
Q ss_pred ceeEEEECCEEEEEccCCCCcccCcEEEEEcCCCe-EEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCC
Q 008611 188 EHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWA-WSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTK 266 (559)
Q Consensus 188 ~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~-W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~ 266 (559)
-++++.++++|.+.-| +.+.+|++.... +...+... .+-...++...+++|++ |-..
T Consensus 91 V~ai~~~~~~lv~~~g-------~~l~v~~l~~~~~l~~~~~~~-------------~~~~i~sl~~~~~~I~v-gD~~- 148 (321)
T PF03178_consen 91 VTAICSFNGRLVVAVG-------NKLYVYDLDNSKTLLKKAFYD-------------SPFYITSLSVFKNYILV-GDAM- 148 (321)
T ss_dssp EEEEEEETTEEEEEET-------TEEEEEEEETTSSEEEEEEE--------------BSSSEEEEEEETTEEEE-EESS-
T ss_pred ceEhhhhCCEEEEeec-------CEEEEEEccCcccchhhheec-------------ceEEEEEEeccccEEEE-EEcc-
Confidence 5667777999777766 688999998888 88887753 33345555566776654 4321
Q ss_pred CCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEE-CCEEEEEcC
Q 008611 267 DPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGG 314 (559)
Q Consensus 267 ~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG 314 (559)
..-.+..|+....+-..++. -+.++...++..+ ++. .++++
T Consensus 149 ---~sv~~~~~~~~~~~l~~va~---d~~~~~v~~~~~l~d~~-~~i~~ 190 (321)
T PF03178_consen 149 ---KSVSLLRYDEENNKLILVAR---DYQPRWVTAAEFLVDED-TIIVG 190 (321)
T ss_dssp ---SSEEEEEEETTTE-EEEEEE---ESS-BEEEEEEEE-SSS-EEEEE
T ss_pred ---cCEEEEEEEccCCEEEEEEe---cCCCccEEEEEEecCCc-EEEEE
Confidence 22345567887777777763 3446666666666 555 44444
No 233
>PRK00736 hypothetical protein; Provisional
Probab=63.19 E-value=23 Score=26.69 Aligned_cols=45 Identities=20% Similarity=0.192 Sum_probs=27.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhH
Q 008611 510 ETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDL 554 (559)
Q Consensus 510 ~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 554 (559)
.+.|..+.-+..-++++-..+-+.++++..|+.++..+..++++.
T Consensus 8 ~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00736 8 TELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSL 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444445555555566666666666666666666666666666543
No 234
>PTZ00420 coronin; Provisional
Probab=63.09 E-value=2.4e+02 Score=31.07 Aligned_cols=61 Identities=20% Similarity=0.239 Sum_probs=34.3
Q ss_pred EEEEEcCcCCCCCCcCceEEEECCCCceE-EecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCe
Q 008611 308 SLVIFGGEDAKRSLLNDLHILDLETMTWD-EIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTME 385 (559)
Q Consensus 308 ~lyv~GG~~~~~~~~~~~~~yd~~t~~W~-~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~ 385 (559)
.+++.||.++ .+.+||+.+.+=. .+. .+..-.++....++.+++.|+.+ ..+.+||+.+..
T Consensus 139 ~iLaSgS~Dg------tIrIWDl~tg~~~~~i~------~~~~V~SlswspdG~lLat~s~D-----~~IrIwD~Rsg~ 200 (568)
T PTZ00420 139 YIMCSSGFDS------FVNIWDIENEKRAFQIN------MPKKLSSLKWNIKGNLLSGTCVG-----KHMHIIDPRKQE 200 (568)
T ss_pred eEEEEEeCCC------eEEEEECCCCcEEEEEe------cCCcEEEEEECCCCCEEEEEecC-----CEEEEEECCCCc
Confidence 4556666543 4778898776421 111 11122344444466677776643 358899998753
No 235
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=62.88 E-value=2.6 Score=35.83 Aligned_cols=36 Identities=33% Similarity=0.351 Sum_probs=0.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQN 551 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 551 (559)
...+.+++..++..++..+.++.+|++++++++++.
T Consensus 8 k~~laK~~~~LE~~l~~l~~el~~L~~~l~eLe~~~ 43 (118)
T PF08286_consen 8 KFRLAKELSDLESELESLQSELEELKEELEELEEQE 43 (118)
T ss_dssp -----------------------------------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344445555555555555555555555555555444
No 236
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=62.80 E-value=23 Score=31.20 Aligned_cols=18 Identities=33% Similarity=0.547 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008611 516 IATLKAEKEELESSLSKE 533 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~ 533 (559)
|..|++..+.++.++...
T Consensus 37 I~sL~~K~~~lE~eld~~ 54 (143)
T PF12718_consen 37 ITSLQKKNQQLEEELDKL 54 (143)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 237
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=62.73 E-value=1.3e+02 Score=27.75 Aligned_cols=78 Identities=18% Similarity=0.204 Sum_probs=46.6
Q ss_pred EeccCCC--CCCcceEEEEECCCCeEEEeccCCC--CCCCccceEEEEECC--EEEEEcCcCCCCCCcCceEEEECCCCc
Q 008611 261 IAGHTKD--PSEIIQVKVFDLQTCSWSTLKTYGK--PPVSRGGQSVTLVGT--SLVIFGGEDAKRSLLNDLHILDLETMT 334 (559)
Q Consensus 261 ~GG~~~~--~~~~~~v~~yd~~t~~W~~~~~~g~--~p~~r~~~~~~~~~~--~lyv~GG~~~~~~~~~~~~~yd~~t~~ 334 (559)
+-|.+.. ......+|.+|..++.|..+..... --.|. -+..+++ -++++|..-+.-.--..||+|++.++.
T Consensus 75 iegkg~~a~eEgiGkIYIkn~~~~~~~~L~i~~~~~k~sPK---~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~ 151 (200)
T PF15525_consen 75 IEGKGPEAEEEGIGKIYIKNLNNNNWWSLQIDQNEEKYSPK---YIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGN 151 (200)
T ss_pred EEcCCCccccccceeEEEEecCCCceEEEEecCcccccCCc---eeEEecCCcEEEEEccccceEccCCeEEEEEccCCc
Confidence 3444433 3457789999999999887743211 12333 2334443 455566432222223579999999999
Q ss_pred eEEecCC
Q 008611 335 WDEIDAV 341 (559)
Q Consensus 335 W~~~~~~ 341 (559)
=+.+...
T Consensus 152 ~~~ly~~ 158 (200)
T PF15525_consen 152 LTELYEW 158 (200)
T ss_pred eeEeeec
Confidence 8888643
No 238
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.66 E-value=14 Score=35.85 Aligned_cols=48 Identities=21% Similarity=0.178 Sum_probs=36.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhh
Q 008611 509 PETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKV 557 (559)
Q Consensus 509 ~~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ke 557 (559)
+.+.++.|..++.++++++. +++.+.|.++..+++++.+.+++.++..
T Consensus 58 ~~~l~~Ql~~l~g~i~~L~~-~~~~q~q~~~~~~~qe~~~~~~~~~~~g 105 (262)
T COG1729 58 LTQLEQQLRQLQGKIEELRG-IQELQYQNNQNVERQEENEARLDSLESG 105 (262)
T ss_pred cHHHHHHHHHHHhhHHHHHh-HHHHHHHHHHHHHHHHHHHhhhhhhccc
Confidence 46667778888888888887 7777777777777777777777766543
No 239
>PRK02793 phi X174 lysis protein; Provisional
Probab=62.62 E-value=33 Score=26.19 Aligned_cols=26 Identities=12% Similarity=0.259 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhh
Q 008611 526 LESSLSKEKLQSIQLKQDLTEAESQN 551 (559)
Q Consensus 526 ~~~~l~~~~~~~~~l~~~~~~~~~~~ 551 (559)
+-..+-+.++++..|+.++..+..++
T Consensus 27 Ln~~v~~Qq~~I~~L~~~l~~L~~rl 52 (72)
T PRK02793 27 LNVTVTAHEMEMAKLRDHLRLLTEKL 52 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444433333
No 240
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=62.45 E-value=32 Score=26.11 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhh
Q 008611 519 LKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKV 557 (559)
Q Consensus 519 l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ke 557 (559)
+++.+..++.++....+....|++..+..++++..+.++
T Consensus 4 i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~ 42 (71)
T PF10779_consen 4 IKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQ 42 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444433
No 241
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=62.44 E-value=14 Score=38.81 Aligned_cols=25 Identities=16% Similarity=0.145 Sum_probs=15.8
Q ss_pred HHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 534 KLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 534 ~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
+++.++|++++++.+.++++|+++|
T Consensus 115 ~~~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 115 TKEIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666667777665
No 242
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=62.38 E-value=18 Score=34.61 Aligned_cols=44 Identities=20% Similarity=0.192 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHh
Q 008611 512 TEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLY 555 (559)
Q Consensus 512 ~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 555 (559)
.+..+..+.+.++.++..++..+.++.+++.++++.+.++...+
T Consensus 36 ~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e 79 (239)
T COG1579 36 AKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAE 79 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555555555555555554443
No 243
>PRK14127 cell division protein GpsB; Provisional
Probab=62.30 E-value=20 Score=29.87 Aligned_cols=40 Identities=13% Similarity=0.273 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 008611 512 TEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQN 551 (559)
Q Consensus 512 ~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 551 (559)
.+..+.++.++.+.+...+.+.+.++..|++++++.+.++
T Consensus 28 VD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~ 67 (109)
T PRK14127 28 VDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQV 67 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334455555555555555555555555555555555444
No 244
>COG1422 Predicted membrane protein [Function unknown]
Probab=62.11 E-value=23 Score=32.73 Aligned_cols=20 Identities=10% Similarity=0.238 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008611 516 IATLKAEKEELESSLSKEKL 535 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~ 535 (559)
.++++++.++.|+..+++++
T Consensus 74 m~~~qk~m~efq~e~~eA~~ 93 (201)
T COG1422 74 MKELQKMMKEFQKEFREAQE 93 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 245
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=61.93 E-value=13 Score=29.29 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=11.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHH
Q 008611 510 ETTEHLIATLKAEKEELESSLS 531 (559)
Q Consensus 510 ~~~~~~~~~l~~e~~~~~~~l~ 531 (559)
+..++.+.+....++.++.+|.
T Consensus 8 d~lEekl~~cr~~le~ve~rL~ 29 (85)
T PF15188_consen 8 DGLEEKLAQCRRRLEAVESRLR 29 (85)
T ss_pred hhHHHHHHHHHHHHHHHHHHHc
Confidence 4444555555555555554443
No 246
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=61.56 E-value=19 Score=27.72 Aligned_cols=34 Identities=12% Similarity=0.096 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhH
Q 008611 521 AEKEELESSLSKEKLQSIQLKQDLTEAESQNTDL 554 (559)
Q Consensus 521 ~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 554 (559)
++.+.+........+++++|+++-..-+.++..|
T Consensus 39 ~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 39 QEVQNAQHQREELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334445556666666655555555443
No 247
>PRK09343 prefoldin subunit beta; Provisional
Probab=61.52 E-value=32 Score=29.32 Aligned_cols=48 Identities=21% Similarity=0.223 Sum_probs=35.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhh
Q 008611 510 ETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKV 557 (559)
Q Consensus 510 ~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ke 557 (559)
.+.++....+.+.++-++..+.....+...|+.++.+.+.++.++-+.
T Consensus 67 qd~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~ 114 (121)
T PRK09343 67 VDKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSK 114 (121)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355566777888888888888888888777888888888877766543
No 248
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=61.36 E-value=30 Score=29.21 Aligned_cols=44 Identities=25% Similarity=0.312 Sum_probs=31.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhH
Q 008611 511 TTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDL 554 (559)
Q Consensus 511 ~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 554 (559)
+.+..+++|.+.++.++-++...+.+.+.++.++++++..|.++
T Consensus 67 ~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 67 SKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455777777777777777777777777777777777766443
No 249
>PRK04325 hypothetical protein; Provisional
Probab=61.26 E-value=40 Score=25.92 Aligned_cols=37 Identities=27% Similarity=0.261 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 008611 512 TEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAE 548 (559)
Q Consensus 512 ~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~ 548 (559)
-+.+|++|.+.+.+-+.++...+.++..|..++.+.+
T Consensus 21 QE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 21 QEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445666666666666666666666666666665554
No 250
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=60.92 E-value=1.9e+02 Score=29.05 Aligned_cols=173 Identities=13% Similarity=0.203 Sum_probs=74.7
Q ss_pred eEEecccCCCCCCcccceeEEEE-CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccce
Q 008611 172 QWIAPPISGQRPKARYEHGAAVV-QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHS 250 (559)
Q Consensus 172 ~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~ 250 (559)
+|+.++.. .+.+...+....+ ++.++++|.. ..+|+=.-.-.+|+.+.... .-.-..
T Consensus 92 tW~~v~l~--~~lpgs~~~i~~l~~~~~~l~~~~------G~iy~T~DgG~tW~~~~~~~--------------~gs~~~ 149 (302)
T PF14870_consen 92 TWERVPLS--SKLPGSPFGITALGDGSAELAGDR------GAIYRTTDGGKTWQAVVSET--------------SGSIND 149 (302)
T ss_dssp S-EE------TT-SS-EEEEEEEETTEEEEEETT--------EEEESSTTSSEEEEE-S------------------EEE
T ss_pred CcEEeecC--CCCCCCeeEEEEcCCCcEEEEcCC------CcEEEeCCCCCCeeEcccCC--------------cceeEe
Confidence 99998742 2334444444444 5677777642 34554444567999875431 111222
Q ss_pred eEEe-CCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEEE
Q 008611 251 LIPW-ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHIL 328 (559)
Q Consensus 251 ~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~y 328 (559)
.... ++.+++++.... -....|+-...|.... .+..|.-.++... ++.|++.. ..+ .+..=
T Consensus 150 ~~r~~dG~~vavs~~G~------~~~s~~~G~~~w~~~~----r~~~~riq~~gf~~~~~lw~~~-~Gg------~~~~s 212 (302)
T PF14870_consen 150 ITRSSDGRYVAVSSRGN------FYSSWDPGQTTWQPHN----RNSSRRIQSMGFSPDGNLWMLA-RGG------QIQFS 212 (302)
T ss_dssp EEE-TTS-EEEEETTSS------EEEEE-TT-SS-EEEE------SSS-EEEEEE-TTS-EEEEE-TTT------EEEEE
T ss_pred EEECCCCcEEEEECccc------EEEEecCCCccceEEc----cCccceehhceecCCCCEEEEe-CCc------EEEEc
Confidence 2223 566555654321 2345677777899885 4555655566555 45787764 211 13333
Q ss_pred E--CCCCceEEecCCCCCCCcccc-cEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEeccC
Q 008611 329 D--LETMTWDEIDAVGVPPSPRSD-HAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQ 391 (559)
Q Consensus 329 d--~~t~~W~~~~~~~~~p~~r~~-~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~~~ 391 (559)
+ -....|.+.... .+...++ ..++...++.+++.||.. .+++=.=.-.+|++...
T Consensus 213 ~~~~~~~~w~~~~~~--~~~~~~~~ld~a~~~~~~~wa~gg~G------~l~~S~DgGktW~~~~~ 270 (302)
T PF14870_consen 213 DDPDDGETWSEPIIP--IKTNGYGILDLAYRPPNEIWAVGGSG------TLLVSTDGGKTWQKDRV 270 (302)
T ss_dssp E-TTEEEEE---B-T--TSS--S-EEEEEESSSS-EEEEESTT-------EEEESSTTSS-EE-GG
T ss_pred cCCCCccccccccCC--cccCceeeEEEEecCCCCEEEEeCCc------cEEEeCCCCccceECcc
Confidence 3 234567763311 1122222 233444467899999853 24444445678999753
No 251
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=60.71 E-value=16 Score=29.91 Aligned_cols=45 Identities=16% Similarity=0.147 Sum_probs=37.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhh
Q 008611 509 PETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTD 553 (559)
Q Consensus 509 ~~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~ 553 (559)
+.+.++.+-++.+++..+++.+...-+++..|+-+.+.++.+|.+
T Consensus 10 v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 10 VDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 456677788888888888888888888888888888888888865
No 252
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=60.66 E-value=2.1e+02 Score=29.64 Aligned_cols=183 Identities=13% Similarity=0.130 Sum_probs=82.6
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCCCCCcceE
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQV 274 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v 274 (559)
+++-+||+|... -...+|.+|+.+.+-.++..-. .....+-....-+..+|.+-. ...+
T Consensus 46 dG~kllF~s~~d--g~~nly~lDL~t~~i~QLTdg~------------g~~~~g~~~s~~~~~~~Yv~~-------~~~l 104 (386)
T PF14583_consen 46 DGRKLLFASDFD--GNRNLYLLDLATGEITQLTDGP------------GDNTFGGFLSPDDRALYYVKN-------GRSL 104 (386)
T ss_dssp TS-EEEEEE-TT--SS-EEEEEETTT-EEEE---SS-------------B-TTT-EE-TTSSEEEEEET-------TTEE
T ss_pred CCCEEEEEeccC--CCcceEEEEcccCEEEECccCC------------CCCccceEEecCCCeEEEEEC-------CCeE
Confidence 455556665322 2356899999999999985531 122223333333566665531 1368
Q ss_pred EEEECCCCeEEEeccCCCCCCCccceEEEEEC--CEEEEEcCc----CC-------------CCCCcCceEEEECCCCce
Q 008611 275 KVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVG--TSLVIFGGE----DA-------------KRSLLNDLHILDLETMTW 335 (559)
Q Consensus 275 ~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~--~~lyv~GG~----~~-------------~~~~~~~~~~yd~~t~~W 335 (559)
+..|+.|.+=+.+- ..|..-.+....+++ +.. ++|=. +. .......|...|+.|.+.
T Consensus 105 ~~vdL~T~e~~~vy---~~p~~~~g~gt~v~n~d~t~-~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~ 180 (386)
T PF14583_consen 105 RRVDLDTLEERVVY---EVPDDWKGYGTWVANSDCTK-LVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGER 180 (386)
T ss_dssp EEEETTT--EEEEE---E--TTEEEEEEEEE-TTSSE-EEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--E
T ss_pred EEEECCcCcEEEEE---ECCcccccccceeeCCCccE-EEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCce
Confidence 99999998755554 345444443333332 232 22211 00 001235688889999888
Q ss_pred EEecCCCCCCCcccccEEEEEcCCEEEEEcC-CCCCCCcCceEEEECCCCeeEeccCCCCCCCCccccEEEEEC
Q 008611 336 DEIDAVGVPPSPRSDHAAAVHAERYLLIFGG-GSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIG 408 (559)
Q Consensus 336 ~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG-~~~~~~~~dv~~~d~~~~~W~~~~~~~~~p~~R~~hs~~~~~ 408 (559)
+.+-.. ..-.+|....-.+..+++|-- ......-..||..|........+.. ..+.-..+|---+-+
T Consensus 181 ~~v~~~----~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~--~~~~e~~gHEfw~~D 248 (386)
T PF14583_consen 181 KVVFED----TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHR--RMEGESVGHEFWVPD 248 (386)
T ss_dssp EEEEEE----SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS-----TTEEEEEEEE-TT
T ss_pred eEEEec----CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeec--CCCCcccccccccCC
Confidence 777432 222345444433555666621 1122222479999988777666642 233445555444333
No 253
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=60.38 E-value=31 Score=28.36 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=17.0
Q ss_pred hhHHHHHHHHHhhhhhHhhhhC
Q 008611 538 IQLKQDLTEAESQNTDLYKVIA 559 (559)
Q Consensus 538 ~~l~~~~~~~~~~~~~~~kelq 559 (559)
..+..+++.+++|+++|+.+|+
T Consensus 86 ~~l~~rvd~Lerqv~~Lenk~k 107 (108)
T COG3937 86 DELTERVDALERQVADLENKLK 107 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4577788888888888887775
No 254
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=60.16 E-value=2.9e+02 Score=31.05 Aligned_cols=92 Identities=16% Similarity=0.231 Sum_probs=48.0
Q ss_pred CCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCcCceEEEECCC
Q 008611 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLET 332 (559)
Q Consensus 255 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t 332 (559)
+|.+.+.|+.++. |-++|..++-...-- ...-.+++++.+ .++.++.--.++ .+-.+|+..
T Consensus 361 Dgq~iaTG~eDgK------VKvWn~~SgfC~vTF-----teHts~Vt~v~f~~~g~~llssSLDG------tVRAwDlkR 423 (893)
T KOG0291|consen 361 DGQLIATGAEDGK------VKVWNTQSGFCFVTF-----TEHTSGVTAVQFTARGNVLLSSSLDG------TVRAWDLKR 423 (893)
T ss_pred CCcEEEeccCCCc------EEEEeccCceEEEEe-----ccCCCceEEEEEEecCCEEEEeecCC------eEEeeeecc
Confidence 7888888887654 777777665432221 111223333322 444444443333 244455432
Q ss_pred C-ceEEecCCCCCCCcccccEEEEEcCCEEEEEcCC
Q 008611 333 M-TWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGG 367 (559)
Q Consensus 333 ~-~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~ 367 (559)
. .++... .|.|+...|+++-..+.|++.|+.
T Consensus 424 YrNfRTft----~P~p~QfscvavD~sGelV~AG~~ 455 (893)
T KOG0291|consen 424 YRNFRTFT----SPEPIQFSCVAVDPSGELVCAGAQ 455 (893)
T ss_pred cceeeeec----CCCceeeeEEEEcCCCCEEEeecc
Confidence 1 233332 467777777666545657777774
No 255
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=60.15 E-value=23 Score=34.68 Aligned_cols=39 Identities=28% Similarity=0.245 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhH
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDL 554 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 554 (559)
.+..+.|.|.+..+++.+..++++|+.++.+++++++.+
T Consensus 243 RqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~yl 281 (294)
T KOG4571|consen 243 RQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYL 281 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555555555555555443
No 256
>PRK02793 phi X174 lysis protein; Provisional
Probab=59.93 E-value=28 Score=26.62 Aligned_cols=38 Identities=18% Similarity=0.170 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q 008611 512 TEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAES 549 (559)
Q Consensus 512 ~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~ 549 (559)
-+..|.+|.+.+.+-+.++...++++..|..++.+.+.
T Consensus 20 Qe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 57 (72)
T PRK02793 20 QEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQP 57 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34456666666666666666666666666666666543
No 257
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=59.80 E-value=51 Score=24.60 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 008611 513 EHLIATLKAEKEELESSLSKEKLQ 536 (559)
Q Consensus 513 ~~~~~~l~~e~~~~~~~l~~~~~~ 536 (559)
+.++..|.++++.++.+++..+..
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~~~k 26 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERLEKK 26 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777666666665544
No 258
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=59.67 E-value=13 Score=30.44 Aligned_cols=12 Identities=25% Similarity=0.219 Sum_probs=5.7
Q ss_pred HHhhhhhHhhhh
Q 008611 547 AESQNTDLYKVI 558 (559)
Q Consensus 547 ~~~~~~~~~kel 558 (559)
.+++|+++++.|
T Consensus 88 ~~k~i~~le~~I 99 (100)
T PF04568_consen 88 HRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 444445554443
No 259
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=58.61 E-value=20 Score=27.56 Aligned_cols=29 Identities=31% Similarity=0.258 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 008611 512 TEHLIATLKAEKEELESSLSKEKLQSIQL 540 (559)
Q Consensus 512 ~~~~~~~l~~e~~~~~~~l~~~~~~~~~l 540 (559)
.+..++++++++++++.+.++.+++++.|
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445555555555555555555555555
No 260
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=58.59 E-value=44 Score=23.95 Aligned_cols=34 Identities=24% Similarity=0.260 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhhC
Q 008611 523 KEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVIA 559 (559)
Q Consensus 523 ~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kelq 559 (559)
+++++.+.+....+ +-.++++...|+.+||+.|+
T Consensus 12 L~qmq~kFq~mS~~---I~~riDeM~~RIDdLE~si~ 45 (54)
T PF06825_consen 12 LQQMQDKFQTMSDQ---ILGRIDEMSSRIDDLEKSIA 45 (54)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHCCHHHH-
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHhhHHHHHHHHH
Confidence 44444455554443 56678888888888888763
No 261
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=58.59 E-value=16 Score=36.66 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 522 EKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 522 e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
+++....++++.+++++++...+++...+.+++..+|
T Consensus 219 ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I 255 (312)
T smart00787 219 EIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEI 255 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444444444444433
No 262
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=58.54 E-value=13 Score=39.90 Aligned_cols=21 Identities=43% Similarity=0.477 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHhhhHH
Q 008611 521 AEKEELESSLSKEKLQSIQLK 541 (559)
Q Consensus 521 ~e~~~~~~~l~~~~~~~~~l~ 541 (559)
++++.++..|+..+++..+|+
T Consensus 171 ~~v~~l~~eL~~~~ee~e~L~ 191 (546)
T PF07888_consen 171 EEVERLEAELEQEEEEMEQLK 191 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 263
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=58.49 E-value=18 Score=38.03 Aligned_cols=38 Identities=16% Similarity=0.227 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhh
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTD 553 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~ 553 (559)
.+.+..+.++++++.++.+.+.++++..+++++.||+.
T Consensus 104 ~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~ 141 (472)
T TIGR03752 104 QQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAG 141 (472)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444555556666666666666677777777666643
No 264
>PRK09039 hypothetical protein; Validated
Probab=58.48 E-value=14 Score=37.69 Aligned_cols=40 Identities=15% Similarity=0.239 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 008611 512 TEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQN 551 (559)
Q Consensus 512 ~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 551 (559)
.++.|+.|++++..++..|...+++....+.++++++++|
T Consensus 142 L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L 181 (343)
T PRK09039 142 LNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRL 181 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444433
No 265
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=58.30 E-value=24 Score=31.63 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHH
Q 008611 525 ELESSLSKEKLQSIQLKQDLTEA 547 (559)
Q Consensus 525 ~~~~~l~~~~~~~~~l~~~~~~~ 547 (559)
+++.-.++..+|+++|++||.+.
T Consensus 149 QLQsLR~avRqElqELE~QL~DR 171 (179)
T PF14723_consen 149 QLQSLRSAVRQELQELEFQLEDR 171 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444433
No 266
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=58.08 E-value=21 Score=29.58 Aligned_cols=34 Identities=12% Similarity=0.042 Sum_probs=25.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 008611 510 ETTEHLIATLKAEKEELESSLSKEKLQSIQLKQD 543 (559)
Q Consensus 510 ~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~ 543 (559)
.+.++.+.++++++++++++.++.+.++..|+..
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~ 63 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGG 63 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 4556667788888888888888888888877754
No 267
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=57.87 E-value=34 Score=24.31 Aligned_cols=33 Identities=27% Similarity=0.386 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q 008611 517 ATLKAEKEELESSLSKEKLQSIQLKQDLTEAES 549 (559)
Q Consensus 517 ~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~ 549 (559)
+.-+...++++..++..+.++.+|+++++.+++
T Consensus 21 ~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 21 QRKKQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334455566666666666666667766666654
No 268
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=57.63 E-value=21 Score=32.06 Aligned_cols=32 Identities=25% Similarity=0.311 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEA 547 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~ 547 (559)
+.+|..++++++.++++.+.++.+|..++.+.
T Consensus 108 ~~elr~~~~~l~~~i~~~~~~~~~L~~~l~~~ 139 (181)
T KOG3335|consen 108 IMELRLKVEKLENAIAELTKFFSQLHSKLNKP 139 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 44455555555554444444444444333333
No 269
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=57.54 E-value=69 Score=23.13 Aligned_cols=41 Identities=15% Similarity=0.195 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhh
Q 008611 512 TEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNT 552 (559)
Q Consensus 512 ~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~ 552 (559)
....++.|..+..+++..+...+.+++..+.|-+-+.+||.
T Consensus 8 Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlD 48 (56)
T PF04728_consen 8 LSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLD 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666666666666666666666666555666653
No 270
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=57.34 E-value=17 Score=32.54 Aligned_cols=49 Identities=18% Similarity=0.192 Sum_probs=35.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhh
Q 008611 509 PETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKV 557 (559)
Q Consensus 509 ~~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ke 557 (559)
+......++.|++|+...+..++.....+++|+......+.+.++.++.
T Consensus 36 L~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 36 LAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344445778888888888888888888888888877777777665554
No 271
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=57.33 E-value=29 Score=32.09 Aligned_cols=17 Identities=24% Similarity=0.384 Sum_probs=7.5
Q ss_pred HHHHHHHhhhhhHhhhh
Q 008611 542 QDLTEAESQNTDLYKVI 558 (559)
Q Consensus 542 ~~~~~~~~~~~~~~kel 558 (559)
++++++++++++|.+||
T Consensus 110 ~~l~~l~~~~~~l~~el 126 (188)
T PF03962_consen 110 EELEELKKELKELKKEL 126 (188)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 272
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=57.00 E-value=27 Score=31.18 Aligned_cols=12 Identities=33% Similarity=0.634 Sum_probs=4.6
Q ss_pred HHHHHHHHHhhh
Q 008611 540 LKQDLTEAESQN 551 (559)
Q Consensus 540 l~~~~~~~~~~~ 551 (559)
|+.+++++++.+
T Consensus 56 Lk~~i~~lq~~~ 67 (155)
T PF06810_consen 56 LKKQIEELQAKN 67 (155)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 273
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=56.76 E-value=2.1e+02 Score=28.26 Aligned_cols=118 Identities=13% Similarity=0.024 Sum_probs=66.6
Q ss_pred ceeEE-eCCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCcc-ceEEEEE--CCEEEEEcCcCCCCCCcCc
Q 008611 249 HSLIP-WENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRG-GQSVTLV--GTSLVIFGGEDAKRSLLND 324 (559)
Q Consensus 249 ~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~-~~~~~~~--~~~lyv~GG~~~~~~~~~~ 324 (559)
+++|+ -+|.+|+..= .-+-+-+.|+.+..=+.+. .|.+.. +..-+.. -+++++.-- -...
T Consensus 192 yGi~atpdGsvwyasl------agnaiaridp~~~~aev~p----~P~~~~~gsRriwsdpig~~wittw------g~g~ 255 (353)
T COG4257 192 YGICATPDGSVWYASL------AGNAIARIDPFAGHAEVVP----QPNALKAGSRRIWSDPIGRAWITTW------GTGS 255 (353)
T ss_pred cceEECCCCcEEEEec------cccceEEcccccCCcceec----CCCcccccccccccCccCcEEEecc------CCce
Confidence 34444 3778877521 2234667777777544443 333311 1111111 346666511 1346
Q ss_pred eEEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEecc
Q 008611 325 LHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (559)
Q Consensus 325 ~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~~ 390 (559)
+++||+.+..|.+-+..+..| | ..++-+-..+.+++-- -..+-|.+||+.+.+...+.
T Consensus 256 l~rfdPs~~sW~eypLPgs~a--r-pys~rVD~~grVW~se-----a~agai~rfdpeta~ftv~p 313 (353)
T COG4257 256 LHRFDPSVTSWIEYPLPGSKA--R-PYSMRVDRHGRVWLSE-----ADAGAIGRFDPETARFTVLP 313 (353)
T ss_pred eeEeCcccccceeeeCCCCCC--C-cceeeeccCCcEEeec-----cccCceeecCcccceEEEec
Confidence 999999999999886543322 2 2344444445566522 12456999999999998873
No 274
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=56.63 E-value=14 Score=38.88 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=8.4
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 008611 512 TEHLIATLKAEKEELESS 529 (559)
Q Consensus 512 ~~~~~~~l~~e~~~~~~~ 529 (559)
.++.+..+++++++++.+
T Consensus 247 l~~~~~~~~~~i~~l~~~ 264 (406)
T PF02388_consen 247 LQEKLEKLEKEIEKLEEK 264 (406)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444454555444444
No 275
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=56.54 E-value=43 Score=26.55 Aligned_cols=33 Identities=27% Similarity=0.325 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAE 548 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~ 548 (559)
+++|+.++++.+.++++.+.++.+|+.+...++
T Consensus 3 Le~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l~ 35 (86)
T PF12958_consen 3 LEELQAEIEKAEKKLEQAEHKIKQLENRKKKLE 35 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555544443
No 276
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=56.40 E-value=2.5e+02 Score=29.05 Aligned_cols=156 Identities=15% Similarity=0.134 Sum_probs=75.7
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEE-eCCEEEEEeccCCCCCCcce
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIP-WENKLLSIAGHTKDPSEIIQ 273 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~ 273 (559)
+.++|+.+. + ..+.++|+.+.+=..-- +.....++.+. -+|+.++.+.+.. +.
T Consensus 48 gr~~yv~~r-d-----g~vsviD~~~~~~v~~i---------------~~G~~~~~i~~s~DG~~~~v~n~~~-----~~ 101 (369)
T PF02239_consen 48 GRYLYVANR-D-----GTVSVIDLATGKVVATI---------------KVGGNPRGIAVSPDGKYVYVANYEP-----GT 101 (369)
T ss_dssp SSEEEEEET-T-----SEEEEEETTSSSEEEEE---------------E-SSEEEEEEE--TTTEEEEEEEET-----TE
T ss_pred CCEEEEEcC-C-----CeEEEEECCcccEEEEE---------------ecCCCcceEEEcCCCCEEEEEecCC-----Cc
Confidence 567999853 2 36899999998732211 12333333333 3666555555433 47
Q ss_pred EEEEECCCCeEEEeccCCCC----CCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCccc
Q 008611 274 VKVFDLQTCSWSTLKTYGKP----PVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRS 349 (559)
Q Consensus 274 v~~yd~~t~~W~~~~~~g~~----p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~ 349 (559)
+..+|..+.+=...-+.+.. +.+|...-.+.-.+..||+--.+ .+.+|..|.....=..... ...++.
T Consensus 102 v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd-----~~~I~vVdy~d~~~~~~~~---i~~g~~ 173 (369)
T PF02239_consen 102 VSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD-----TGEIWVVDYSDPKNLKVTT---IKVGRF 173 (369)
T ss_dssp EEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT-----TTEEEEEETTTSSCEEEEE---EE--TT
T ss_pred eeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEcc-----CCeEEEEEeccccccceee---eccccc
Confidence 88999988764332222222 23343322222344555554332 3568888876542111111 134555
Q ss_pred ccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEe
Q 008611 350 DHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSR 388 (559)
Q Consensus 350 ~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~ 388 (559)
-|-..+..+++.|+.+-.. .+.+-++|..++.-..
T Consensus 174 ~~D~~~dpdgry~~va~~~----sn~i~viD~~~~k~v~ 208 (369)
T PF02239_consen 174 PHDGGFDPDGRYFLVAANG----SNKIAVIDTKTGKLVA 208 (369)
T ss_dssp EEEEEE-TTSSEEEEEEGG----GTEEEEEETTTTEEEE
T ss_pred ccccccCcccceeeecccc----cceeEEEeeccceEEE
Confidence 6666665554334333221 3467788887775444
No 277
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=56.32 E-value=27 Score=34.28 Aligned_cols=45 Identities=11% Similarity=0.133 Sum_probs=25.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHh
Q 008611 511 TTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLY 555 (559)
Q Consensus 511 ~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 555 (559)
+.++.++.|+.|+.+++-++++.+-++++++++-.+.-++|.++.
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~ 102 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLS 102 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666666665555555555554443
No 278
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=56.18 E-value=17 Score=39.94 Aligned_cols=49 Identities=29% Similarity=0.399 Sum_probs=26.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 510 ETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 510 ~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
++.+..++++..++++++..+...+.++.++..++++.+...+++++++
T Consensus 331 ~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~ 379 (594)
T PF05667_consen 331 EELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEEL 379 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555555555555555555553
No 279
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=55.70 E-value=80 Score=28.99 Aligned_cols=66 Identities=17% Similarity=0.172 Sum_probs=41.6
Q ss_pred CcCceEEEECCCCceEEecCCCC--CCCcccccEEEEEcCCE-EEEEcCCCCCCC--cCceEEEECCCCeeEecc
Q 008611 321 LLNDLHILDLETMTWDEIDAVGV--PPSPRSDHAAAVHAERY-LLIFGGGSHAAC--FNDLHVLDLQTMEWSRPT 390 (559)
Q Consensus 321 ~~~~~~~yd~~t~~W~~~~~~~~--~p~~r~~~~~~~~~~~~-l~v~GG~~~~~~--~~dv~~~d~~~~~W~~~~ 390 (559)
-..+||++|..++.|..+..... .-.|. -+..+++.. ++|+|. ..+.. -..||+|++.++.-..+.
T Consensus 86 giGkIYIkn~~~~~~~~L~i~~~~~k~sPK---~i~WiDD~~L~vIIG~-a~GTvS~GGnLy~~nl~tg~~~~ly 156 (200)
T PF15525_consen 86 GIGKIYIKNLNNNNWWSLQIDQNEEKYSPK---YIEWIDDNNLAVIIGY-AHGTVSKGGNLYKYNLNTGNLTELY 156 (200)
T ss_pred cceeEEEEecCCCceEEEEecCcccccCCc---eeEEecCCcEEEEEcc-ccceEccCCeEEEEEccCCceeEee
Confidence 46789999999988876643211 22344 244555544 555553 33322 247999999999887774
No 280
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=55.52 E-value=20 Score=34.10 Aligned_cols=48 Identities=21% Similarity=0.173 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhhC
Q 008611 512 TEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVIA 559 (559)
Q Consensus 512 ~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kelq 559 (559)
......+|-.-++++.+.++..+.-+.-|++++.+.+.+++.|.|.++
T Consensus 255 lkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~ 302 (330)
T KOG2991|consen 255 LKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLE 302 (330)
T ss_pred HHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455666667777788888888888899999999988888888763
No 281
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=55.24 E-value=33 Score=33.41 Aligned_cols=40 Identities=28% Similarity=0.369 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHh
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLY 555 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 555 (559)
+...+.|+++.++.|.+.++++..++.++.+...+|.+++
T Consensus 202 l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~ 241 (269)
T PF05278_consen 202 LELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELE 241 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555666666666666666666666665554
No 282
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=55.15 E-value=23 Score=37.51 Aligned_cols=42 Identities=21% Similarity=0.088 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhh
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKV 557 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ke 557 (559)
...-++.++-+|..|++..+++++|+.|...+.+||+.++.|
T Consensus 297 RkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~E 338 (655)
T KOG4343|consen 297 RKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSE 338 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 334456667888889999999999999999999999887765
No 283
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=54.89 E-value=44 Score=24.09 Aligned_cols=40 Identities=18% Similarity=0.250 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhH
Q 008611 515 LIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDL 554 (559)
Q Consensus 515 ~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 554 (559)
.+.+|..+.+++..++.+...++..++.++..+..+-+..
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRA 43 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARA 43 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777777777777777776666554443
No 284
>PRK04043 tolB translocation protein TolB; Provisional
Probab=54.79 E-value=2.8e+02 Score=29.21 Aligned_cols=148 Identities=10% Similarity=0.042 Sum_probs=81.1
Q ss_pred CcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccC
Q 008611 211 SDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTY 290 (559)
Q Consensus 211 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~ 290 (559)
.++|.+|+.++.++++.... ..-.......-+.+||+..... ....++.+|+.+++.+.+...
T Consensus 257 ~~Iy~~dl~~g~~~~LT~~~-------------~~d~~p~~SPDG~~I~F~Sdr~----g~~~Iy~~dl~~g~~~rlt~~ 319 (419)
T PRK04043 257 PDIYLYDTNTKTLTQITNYP-------------GIDVNGNFVEDDKRIVFVSDRL----GYPNIFMKKLNSGSVEQVVFH 319 (419)
T ss_pred cEEEEEECCCCcEEEcccCC-------------CccCccEECCCCCEEEEEECCC----CCceEEEEECCCCCeEeCccC
Confidence 68999999999988874321 1000111111234666665432 235899999999998887643
Q ss_pred CCCCCCccceEEEEECC-EEEEEcCcCCCC--CCcCceEEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCC
Q 008611 291 GKPPVSRGGQSVTLVGT-SLVIFGGEDAKR--SLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGG 367 (559)
Q Consensus 291 g~~p~~r~~~~~~~~~~-~lyv~GG~~~~~--~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~ 367 (559)
|. ... ...-++ .|.+........ ....+++.+|+.+..++.+...+ . ........++..++|-..
T Consensus 320 g~-----~~~-~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~-----~-~~~p~~SPDG~~I~f~~~ 387 (419)
T PRK04043 320 GK-----NNS-SVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANG-----V-NQFPRFSSDGGSIMFIKY 387 (419)
T ss_pred CC-----cCc-eECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCC-----C-cCCeEECCCCCEEEEEEc
Confidence 22 112 222244 444443322111 01357999999999998886431 1 122333344444444322
Q ss_pred CCCCCcCceEEEECCCCeeEec
Q 008611 368 SHAACFNDLHVLDLQTMEWSRP 389 (559)
Q Consensus 368 ~~~~~~~dv~~~d~~~~~W~~~ 389 (559)
.+ ....++.+++..+.=..+
T Consensus 388 ~~--~~~~L~~~~l~g~~~~~l 407 (419)
T PRK04043 388 LG--NQSALGIIRLNYNKSFLF 407 (419)
T ss_pred cC--CcEEEEEEecCCCeeEEe
Confidence 21 234688898877644444
No 285
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=54.55 E-value=11 Score=39.94 Aligned_cols=17 Identities=35% Similarity=0.423 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008611 515 LIATLKAEKEELESSLS 531 (559)
Q Consensus 515 ~~~~l~~e~~~~~~~l~ 531 (559)
+|++|++|++++++++.
T Consensus 32 kie~L~kql~~Lk~q~~ 48 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQD 48 (489)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 34444444444444433
No 286
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=54.35 E-value=14 Score=33.61 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=10.3
Q ss_pred CcchHHHHHHHHHHHHHHHHHHH
Q 008611 509 PETTEHLIATLKAEKEELESSLS 531 (559)
Q Consensus 509 ~~~~~~~~~~l~~e~~~~~~~l~ 531 (559)
+.+.+..+.+|+.+...++..|.
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~ 103 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELA 103 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 287
>PRK00846 hypothetical protein; Provisional
Probab=53.84 E-value=40 Score=26.11 Aligned_cols=34 Identities=12% Similarity=0.108 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 008611 515 LIATLKAEKEELESSLSKEKLQSIQLKQDLTEAE 548 (559)
Q Consensus 515 ~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~ 548 (559)
+|.+|.+.+.+.+..+...++++..|..++.+++
T Consensus 28 tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 28 ALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444444444444444444444444444443
No 288
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=53.79 E-value=2.2e+02 Score=27.58 Aligned_cols=156 Identities=13% Similarity=0.088 Sum_probs=77.5
Q ss_pred EEEECCEEEEEccCCCCcccCcEEEEEcCC-CeEEEeeeccccCCCCCCCCCCCCCCccceeEE-e-CCEEEEEeccCCC
Q 008611 191 AAVVQDKMYIYGGNHNGRYLSDMHILDLRS-WAWSKIQAKAVAESTESPSPALLTPCAGHSLIP-W-ENKLLSIAGHTKD 267 (559)
Q Consensus 191 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t-~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~-~~~lyv~GG~~~~ 267 (559)
...-++.+++..=.........+..|.... .+|+...... ......+.+.. . +|.|+++--.. .
T Consensus 114 i~~~~G~l~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~------------~~~~~~e~~~~~~~dG~l~~~~R~~-~ 180 (275)
T PF13088_consen 114 IQLPDGRLIAPYYHESGGSFSAFVYYSDDGGKTWSSGSPIP------------DGQGECEPSIVELPDGRLLAVFRTE-G 180 (275)
T ss_dssp EEECTTEEEEEEEEESSCEEEEEEEEESSTTSSEEEEEECE------------CSEEEEEEEEEEETTSEEEEEEEEC-S
T ss_pred eEecCCCEEEEEeeccccCcceEEEEeCCCCceeecccccc------------ccCCcceeEEEECCCCcEEEEEEcc-C
Confidence 333477877762101112233444455544 5699886531 22233344433 2 67888886553 2
Q ss_pred CCCcceEEEEECC-CCeEEEeccCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCC
Q 008611 268 PSEIIQVKVFDLQ-TCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPP 345 (559)
Q Consensus 268 ~~~~~~v~~yd~~-t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p 345 (559)
.. .....+... -.+|+.+... .+|.+.....+... ++.++++......+ ..-.++.-.-...+|..+......+
T Consensus 181 ~~--~~~~~~S~D~G~TWs~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~r-~~l~l~~S~D~g~tW~~~~~i~~~~ 256 (275)
T PF13088_consen 181 ND--DIYISRSTDGGRTWSPPQPT-NLPNPNSSISLVRLSDGRLLLVYNNPDGR-SNLSLYVSEDGGKTWSRPKTIDDGP 256 (275)
T ss_dssp ST--EEEEEEESSTTSS-EEEEEE-ECSSCCEEEEEEECTTSEEEEEEECSSTS-EEEEEEEECTTCEEEEEEEEEEEEE
T ss_pred CC--cEEEEEECCCCCcCCCceec-ccCcccCCceEEEcCCCCEEEEEECCCCC-CceEEEEEeCCCCcCCccEEEeCCC
Confidence 11 333444444 3469987543 35666666555554 45777777732222 1122333333477898765442222
Q ss_pred Cccc-ccEEEEEcCCEEEE
Q 008611 346 SPRS-DHAAAVHAERYLLI 363 (559)
Q Consensus 346 ~~r~-~~~~~~~~~~~l~v 363 (559)
...+ +.+++...++.|+|
T Consensus 257 ~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 257 NGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp -CCEEEEEEEEEETTEEEE
T ss_pred CCcEECCeeEEeCCCcCCC
Confidence 2223 34455555677876
No 289
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=53.62 E-value=26 Score=27.80 Aligned_cols=33 Identities=15% Similarity=0.148 Sum_probs=21.2
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 008611 509 PETTEHLIATLKAEKEELESSLSKEKLQSIQLK 541 (559)
Q Consensus 509 ~~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~ 541 (559)
+++.++.+...++++++.+.+++..+.+..+|.
T Consensus 3 Le~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l~ 35 (86)
T PF12958_consen 3 LEELQAEIEKAEKKLEQAEHKIKQLENRKKKLE 35 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666667777777777766666666654
No 290
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=53.61 E-value=17 Score=36.19 Aligned_cols=47 Identities=26% Similarity=0.234 Sum_probs=22.6
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHh
Q 008611 509 PETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLY 555 (559)
Q Consensus 509 ~~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 555 (559)
+++.++.+.+++++..+....++........|+.++++++.++.++.
T Consensus 121 lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rd 167 (302)
T PF09738_consen 121 LEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRD 167 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444445555555555554443
No 291
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.46 E-value=37 Score=33.96 Aligned_cols=32 Identities=34% Similarity=0.260 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEA 547 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~ 547 (559)
.++|..+++.+|++++..+.++.-|..+++|+
T Consensus 248 ~~kL~~~~etLEqq~~~L~~niDIL~~k~~ea 279 (365)
T KOG2391|consen 248 KQKLVAMKETLEQQLQSLQKNIDILKSKVREA 279 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 55555566666666666666666666655553
No 292
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=53.36 E-value=50 Score=28.13 Aligned_cols=38 Identities=29% Similarity=0.399 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhH
Q 008611 517 ATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDL 554 (559)
Q Consensus 517 ~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 554 (559)
.+|++++.++.++++...+++.++..+++..+..++.|
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l 114 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEAL 114 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555666666666666666666555555444
No 293
>PRK09343 prefoldin subunit beta; Provisional
Probab=53.33 E-value=46 Score=28.35 Aligned_cols=44 Identities=18% Similarity=0.177 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHh
Q 008611 512 TEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLY 555 (559)
Q Consensus 512 ~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 555 (559)
....++.+..++++++.+++....+.++|+.++.+.+.-+.+++
T Consensus 5 ~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~ 48 (121)
T PRK09343 5 IPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELE 48 (121)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777777778888888888888887777777666654
No 294
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=53.30 E-value=27 Score=31.18 Aligned_cols=16 Identities=19% Similarity=-0.008 Sum_probs=6.8
Q ss_pred HHHHHHHhhhHHHHHH
Q 008611 530 LSKEKLQSIQLKQDLT 545 (559)
Q Consensus 530 l~~~~~~~~~l~~~~~ 545 (559)
.++.+.++..|+.++.
T Consensus 53 ~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 53 NEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444444
No 295
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=53.29 E-value=28 Score=38.51 Aligned_cols=47 Identities=23% Similarity=0.207 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 512 TEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 512 ~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
.+..+..|+++++.++.+++...+.++.|..-+.+.+.+|.+++++|
T Consensus 85 Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~l 131 (617)
T PF15070_consen 85 LQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEEL 131 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457788899999998888877777777777777777777777655
No 296
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=53.29 E-value=23 Score=33.26 Aligned_cols=45 Identities=24% Similarity=0.279 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhh
Q 008611 513 EHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKV 557 (559)
Q Consensus 513 ~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ke 557 (559)
++....+..+++.++.+++..+.+++..+.+.+++++|.+++.+|
T Consensus 150 ~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~E 194 (216)
T KOG1962|consen 150 EEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDE 194 (216)
T ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH
Confidence 444566666666666777777777777777777777776666655
No 297
>PF06273 eIF-4B: Plant specific eukaryotic initiation factor 4B; InterPro: IPR010433 This family consists of several plant specific eukaryotic initiation factor 4B proteins.
Probab=53.01 E-value=20 Score=37.61 Aligned_cols=47 Identities=23% Similarity=0.288 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH--HHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 512 TEHLIATLKAEKEELESSLSKE--KLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 512 ~~~~~~~l~~e~~~~~~~l~~~--~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
....|..|++++++.+...+.. ..+.+.|.++|.++|++|+.|.+||
T Consensus 371 lKeeI~~lk~~l~~~~~~~~~~~~~~~~~~~~e~i~~kE~eLe~L~~el 419 (492)
T PF06273_consen 371 LKEEINALKERLEEEEASSEKSKGSGEEESLREEISQKEKELEKLTREL 419 (492)
T ss_pred hhhhHHHHHHHHHhhhhhhhhccccccchhHHHHHHHHHHHHHHHHHHh
Confidence 3445667777776666544333 1122568888899999999888887
No 298
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=52.94 E-value=13 Score=38.04 Aligned_cols=42 Identities=14% Similarity=0.274 Sum_probs=20.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 008611 510 ETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQN 551 (559)
Q Consensus 510 ~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 551 (559)
++.+..+.++..+++.++.+.+..+.+.++|+.+++..+.++
T Consensus 238 ~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl 279 (344)
T PF12777_consen 238 AEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKL 279 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333444444444444444444444445555555555555444
No 299
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=52.66 E-value=50 Score=29.48 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHhhhHHH
Q 008611 521 AEKEELESSLSKEKLQSIQLKQ 542 (559)
Q Consensus 521 ~e~~~~~~~l~~~~~~~~~l~~ 542 (559)
.|++.+.+-|...+.....|++
T Consensus 43 eEI~TLrqvL~aKer~~~eLKr 64 (162)
T PF04201_consen 43 EEIQTLRQVLAAKERHCAELKR 64 (162)
T ss_pred HHHHHHHHHHHHHHHhHHHHHH
Confidence 3333333333333443333333
No 300
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=52.34 E-value=23 Score=29.34 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=14.1
Q ss_pred HHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 534 KLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 534 ~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
..+...++.++.+++.++.+++.+|
T Consensus 73 ~~e~~~lk~~i~~le~~~~~~e~~l 97 (108)
T PF02403_consen 73 KAEVKELKEEIKELEEQLKELEEEL 97 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566666666666655554
No 301
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=52.29 E-value=32 Score=25.69 Aligned_cols=38 Identities=18% Similarity=0.174 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhh
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTD 553 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~ 553 (559)
.++|+.|-..+.+++...+.+-.+|.++++.+..+++.
T Consensus 16 ~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEa 53 (65)
T TIGR02449 16 LERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEA 53 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666777777777777777777777777777777643
No 302
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=52.28 E-value=54 Score=25.62 Aligned_cols=41 Identities=17% Similarity=0.158 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhH
Q 008611 514 HLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDL 554 (559)
Q Consensus 514 ~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 554 (559)
..+.+|+..+..+-.+++..+.+..+|+.+.+=++.-+..|
T Consensus 23 ~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 23 QEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777777777777777777777777777776666544
No 303
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=52.24 E-value=25 Score=30.39 Aligned_cols=45 Identities=33% Similarity=0.411 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH----HHhhhHHHHHHHHHhhhhhHhh
Q 008611 512 TEHLIATLKAEKEELESSLSKEK----LQSIQLKQDLTEAESQNTDLYK 556 (559)
Q Consensus 512 ~~~~~~~l~~e~~~~~~~l~~~~----~~~~~l~~~~~~~~~~~~~~~k 556 (559)
.+..+..|+.+.+..+..|...+ .+-..|+.++.++++++.+|..
T Consensus 71 ~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~ 119 (132)
T PF07926_consen 71 LQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNE 119 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444443333322 2233355666666666666554
No 304
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=51.79 E-value=49 Score=30.23 Aligned_cols=20 Identities=15% Similarity=0.192 Sum_probs=10.7
Q ss_pred hhHHHHHHHHHhhhhhHhhh
Q 008611 538 IQLKQDLTEAESQNTDLYKV 557 (559)
Q Consensus 538 ~~l~~~~~~~~~~~~~~~ke 557 (559)
.|..++++|+-++|+.|+..
T Consensus 121 l~hr~e~ee~~~~l~~le~~ 140 (175)
T PRK13182 121 LQHRREMEEMLERLQKLEAR 140 (175)
T ss_pred HHhHHHHHHHHHHHHHHHHH
Confidence 33445666665555555543
No 305
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=51.68 E-value=36 Score=29.15 Aligned_cols=48 Identities=13% Similarity=0.136 Sum_probs=32.3
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHh
Q 008611 508 HPETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLY 555 (559)
Q Consensus 508 ~~~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 555 (559)
++++..+..+..+++..+++..+++...++..++.-+..++..+.+++
T Consensus 76 klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 76 KLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555556666677777777777777777777777777777766654
No 306
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=51.66 E-value=38 Score=29.77 Aligned_cols=36 Identities=25% Similarity=0.377 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQN 551 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 551 (559)
+..+..+..+++..+...+..+++|+.+++.++.++
T Consensus 23 ~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l 58 (143)
T PF12718_consen 23 VKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQL 58 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444
No 307
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=51.43 E-value=39 Score=29.57 Aligned_cols=21 Identities=33% Similarity=0.514 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHH
Q 008611 521 AEKEELESSLSKEKLQSIQLK 541 (559)
Q Consensus 521 ~e~~~~~~~l~~~~~~~~~l~ 541 (559)
.++..+.+.++..+.++..|+
T Consensus 80 sEk~~L~k~lq~~q~kv~eLE 100 (140)
T PF10473_consen 80 SEKENLDKELQKKQEKVSELE 100 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 308
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=51.21 E-value=43 Score=30.46 Aligned_cols=32 Identities=22% Similarity=0.148 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 527 ESSLSKEKLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 527 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
+.-++..++-+++-+++.++++.++++|++||
T Consensus 138 ~~G~~~r~~~i~~a~~~~~e~~~~l~~l~~ei 169 (176)
T PF12999_consen 138 KEGLKIRQELIEEAKKKREELEKKLEELEKEI 169 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444444555554444
No 309
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=51.20 E-value=25 Score=39.07 Aligned_cols=37 Identities=22% Similarity=0.074 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 008611 515 LIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQN 551 (559)
Q Consensus 515 ~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 551 (559)
.|..|+.....+|.+++..|..++.++.++.+.+.+|
T Consensus 107 QiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etel 143 (1265)
T KOG0976|consen 107 QIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEI 143 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444
No 310
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=51.03 E-value=1.9e+02 Score=29.97 Aligned_cols=158 Identities=11% Similarity=0.048 Sum_probs=76.4
Q ss_pred cccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEE-eCCEEEEEeccCCCCCCcceEEEEECCCCeEEE
Q 008611 208 RYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIP-WENKLLSIAGHTKDPSEIIQVKVFDLQTCSWST 286 (559)
Q Consensus 208 ~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~ 286 (559)
+..+.+...|+.+++.+.+-.. ..-.+|.-.. .+..+++|.=.++-......||..|........
T Consensus 165 ~p~~~i~~idl~tG~~~~v~~~--------------~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~ 230 (386)
T PF14583_consen 165 RPHCRIFTIDLKTGERKVVFED--------------TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKK 230 (386)
T ss_dssp ---EEEEEEETTT--EEEEEEE--------------SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EE
T ss_pred CCCceEEEEECCCCceeEEEec--------------CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCccee
Confidence 4567789999999998877543 2223454333 355677775444443334589999998887777
Q ss_pred eccCCCCCCCccceEEEEECCE-EEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEc
Q 008611 287 LKTYGKPPVSRGGQSVTLVGTS-LVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFG 365 (559)
Q Consensus 287 ~~~~g~~p~~r~~~~~~~~~~~-lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~G 365 (559)
+.. .++....+|--..-++. |+..+...+.. -.-|..||+.|..=+.+. +.|++.|-++.. ++.|++--
T Consensus 231 v~~--~~~~e~~gHEfw~~DG~~i~y~~~~~~~~--~~~i~~~d~~t~~~~~~~-----~~p~~~H~~ss~-Dg~L~vGD 300 (386)
T PF14583_consen 231 VHR--RMEGESVGHEFWVPDGSTIWYDSYTPGGQ--DFWIAGYDPDTGERRRLM-----EMPWCSHFMSSP-DGKLFVGD 300 (386)
T ss_dssp SS-----TTEEEEEEEE-TTSS-EEEEEEETTT----EEEEEE-TTT--EEEEE-----EE-SEEEEEE-T-TSSEEEEE
T ss_pred eec--CCCCcccccccccCCCCEEEEEeecCCCC--ceEEEeeCCCCCCceEEE-----eCCceeeeEEcC-CCCEEEec
Confidence 753 24455666666665664 33333322221 234888999887544442 234566777665 44476665
Q ss_pred CCCCCC---------CcC--ceEEEECCCCeeEec
Q 008611 366 GGSHAA---------CFN--DLHVLDLQTMEWSRP 389 (559)
Q Consensus 366 G~~~~~---------~~~--dv~~~d~~~~~W~~~ 389 (559)
|.+... .-+ -|++|++.+..-..+
T Consensus 301 G~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l 335 (386)
T PF14583_consen 301 GGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKL 335 (386)
T ss_dssp E-------------------EEEEEETTTTEEEEE
T ss_pred CCCCCccccccccceecCCcEEEEeccccCceeee
Confidence 543211 112 355677766554433
No 311
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=51.00 E-value=17 Score=30.71 Aligned_cols=53 Identities=17% Similarity=0.107 Sum_probs=38.7
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 506 SKHPETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 506 ~~~~~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
.+.+.+....|..|..+...++...++..+++..++.+=.+++.-|..+|+++
T Consensus 49 Dr~Lv~n~~~I~~L~~~v~~~~~~Q~~ld~~L~~ie~qQ~eLe~~L~~lE~~~ 101 (116)
T PF05064_consen 49 DRQLVENGEKISKLYSEVQKAESEQKRLDQELDFIEAQQKELEELLDPLEKQV 101 (116)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566678888888888888888877777777777777777777666654
No 312
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=50.84 E-value=3.3e+02 Score=28.82 Aligned_cols=150 Identities=13% Similarity=0.075 Sum_probs=79.8
Q ss_pred CcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccC
Q 008611 211 SDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTY 290 (559)
Q Consensus 211 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~ 290 (559)
..++.+|+.++.=..+.... ...++-...-+|+-++|-... ....+++.+|+.+.+=..+.
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~--------------g~~~~P~fspDG~~l~f~~~r---dg~~~iy~~dl~~~~~~~Lt-- 278 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFN--------------GNNGAPAFSPDGSKLAFSSSR---DGSPDIYLMDLDGKNLPRLT-- 278 (425)
T ss_pred ceEEEEeccCCccceeeccC--------------CccCCccCCCCCCEEEEEECC---CCCccEEEEcCCCCcceecc--
Confidence 67888888887766665432 111222222244444443332 23568999999988733332
Q ss_pred CCCCCCccceEEEEECCEEEEEc-CcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCC
Q 008611 291 GKPPVSRGGQSVTLVGTSLVIFG-GEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSH 369 (559)
Q Consensus 291 g~~p~~r~~~~~~~~~~~lyv~G-G~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~ 369 (559)
...++..+....-+++-++|. ...+ ...|+++|++...=+.+...+ ....+-...-++++|.+.+ ...
T Consensus 279 --~~~gi~~~Ps~spdG~~ivf~Sdr~G----~p~I~~~~~~g~~~~riT~~~----~~~~~p~~SpdG~~i~~~~-~~~ 347 (425)
T COG0823 279 --NGFGINTSPSWSPDGSKIVFTSDRGG----RPQIYLYDLEGSQVTRLTFSG----GGNSNPVWSPDGDKIVFES-SSG 347 (425)
T ss_pred --cCCccccCccCCCCCCEEEEEeCCCC----CcceEEECCCCCceeEeeccC----CCCcCccCCCCCCEEEEEe-ccC
Confidence 122233333333344434443 2222 237999999988887776442 1111222222344455554 222
Q ss_pred CCCcCceEEEECCCCe-eEeccCC
Q 008611 370 AACFNDLHVLDLQTME-WSRPTQQ 392 (559)
Q Consensus 370 ~~~~~dv~~~d~~~~~-W~~~~~~ 392 (559)
+. -++..+|+.+.. |..+...
T Consensus 348 g~--~~i~~~~~~~~~~~~~lt~~ 369 (425)
T COG0823 348 GQ--WDIDKNDLASGGKIRILTST 369 (425)
T ss_pred Cc--eeeEEeccCCCCcEEEcccc
Confidence 22 568889887766 8887543
No 313
>PRK14127 cell division protein GpsB; Provisional
Probab=50.81 E-value=55 Score=27.29 Aligned_cols=12 Identities=17% Similarity=0.111 Sum_probs=6.8
Q ss_pred HHHhhhhhHhhh
Q 008611 546 EAESQNTDLYKV 557 (559)
Q Consensus 546 ~~~~~~~~~~ke 557 (559)
+.-+||..|||+
T Consensus 89 DiLKRls~LEk~ 100 (109)
T PRK14127 89 DILKRLSNLEKH 100 (109)
T ss_pred HHHHHHHHHHHH
Confidence 345566666664
No 314
>PRK01742 tolB translocation protein TolB; Provisional
Probab=50.70 E-value=3.2e+02 Score=28.71 Aligned_cols=113 Identities=10% Similarity=0.089 Sum_probs=55.1
Q ss_pred CCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEECCE-EEEEcCcCCCCCCcCceEEEECCCC
Q 008611 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTS-LVIFGGEDAKRSLLNDLHILDLETM 333 (559)
Q Consensus 255 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~-lyv~GG~~~~~~~~~~~~~yd~~t~ 333 (559)
++..+++..... ....++.+|+.++.-..+.. .+. ........-+++ |++....++. -+||.+|+.+.
T Consensus 214 DG~~la~~s~~~---~~~~i~i~dl~tg~~~~l~~---~~g-~~~~~~wSPDG~~La~~~~~~g~----~~Iy~~d~~~~ 282 (429)
T PRK01742 214 DGSKLAYVSFEN---KKSQLVVHDLRSGARKVVAS---FRG-HNGAPAFSPDGSRLAFASSKDGV----LNIYVMGANGG 282 (429)
T ss_pred CCCEEEEEEecC---CCcEEEEEeCCCCceEEEec---CCC-ccCceeECCCCCEEEEEEecCCc----EEEEEEECCCC
Confidence 454444444321 23568999998887666642 111 111112222444 4443322221 35899999888
Q ss_pred ceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCe
Q 008611 334 TWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTME 385 (559)
Q Consensus 334 ~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~ 385 (559)
....+... ...........++..++|.....+ ...+|.+|..+..
T Consensus 283 ~~~~lt~~-----~~~~~~~~wSpDG~~i~f~s~~~g--~~~I~~~~~~~~~ 327 (429)
T PRK01742 283 TPSQLTSG-----AGNNTEPSWSPDGQSILFTSDRSG--SPQVYRMSASGGG 327 (429)
T ss_pred CeEeeccC-----CCCcCCEEECCCCCEEEEEECCCC--CceEEEEECCCCC
Confidence 87766432 111223344445444444322111 2367888776553
No 315
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=50.65 E-value=2.4e+02 Score=27.21 Aligned_cols=155 Identities=16% Similarity=0.192 Sum_probs=76.8
Q ss_pred eEEeccc--CCCCCCcccceeEEE-ECCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCcc
Q 008611 172 QWIAPPI--SGQRPKARYEHGAAV-VQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAG 248 (559)
Q Consensus 172 ~W~~~~~--~g~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~ 248 (559)
.|+..++ .+..|.|-.+..... -.|.|+..||- ..+|+.|+++++.+..-- + ..-+-
T Consensus 100 lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD------~~~y~~dlE~G~i~r~~r-G-------------HtDYv 159 (325)
T KOG0649|consen 100 LWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD------GVIYQVDLEDGRIQREYR-G-------------HTDYV 159 (325)
T ss_pred hhhhcCccccCcccCCccceeEeccCCCcEEEecCC------eEEEEEEecCCEEEEEEc-C-------------Cccee
Confidence 6775443 223455555444333 25788888882 468899999998876521 1 12233
Q ss_pred ceeEEeC-CEEEEEeccCCCCCCcceEEEEECCCCeEEEec-cCCCCCCCc--cce--EEEEECCEEEEEcCcCCCCCCc
Q 008611 249 HSLIPWE-NKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLK-TYGKPPVSR--GGQ--SVTLVGTSLVIFGGEDAKRSLL 322 (559)
Q Consensus 249 ~~~~~~~-~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~-~~g~~p~~r--~~~--~~~~~~~~lyv~GG~~~~~~~~ 322 (559)
|+.+.-+ +-=++-|+.++ .+.+.|..+.+-..+- +......-| .+. .+...+..-.|+||-.
T Consensus 160 H~vv~R~~~~qilsG~EDG------tvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp------ 227 (325)
T KOG0649|consen 160 HSVVGRNANGQILSGAEDG------TVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGP------ 227 (325)
T ss_pred eeeeecccCcceeecCCCc------cEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCC------
Confidence 4444322 22233455443 4777888887654442 211111112 222 3344455666666632
Q ss_pred CceEEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEc
Q 008611 323 NDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFG 365 (559)
Q Consensus 323 ~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~G 365 (559)
.+-.+++.+.+-+.+-+. ++|..++ ..+ ++.+++.|
T Consensus 228 -~lslwhLrsse~t~vfpi----pa~v~~v-~F~-~d~vl~~G 263 (325)
T KOG0649|consen 228 -KLSLWHLRSSESTCVFPI----PARVHLV-DFV-DDCVLIGG 263 (325)
T ss_pred -ceeEEeccCCCceEEEec----ccceeEe-eee-cceEEEec
Confidence 244566665555544322 3343333 333 55455544
No 316
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=50.39 E-value=14 Score=41.55 Aligned_cols=16 Identities=13% Similarity=0.341 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHhCCCc
Q 008611 90 AMRLFVKILEEEDPGW 105 (559)
Q Consensus 90 a~~~yv~~~~~~~~~~ 105 (559)
...-|.+++.+-.|.-
T Consensus 189 ~n~~~~~~l~~~lp~~ 204 (697)
T PF09726_consen 189 ENEFYMQLLQQALPPE 204 (697)
T ss_pred HHHHHHHHHHHhCCCc
Confidence 3345556666555554
No 317
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=50.21 E-value=59 Score=27.66 Aligned_cols=12 Identities=50% Similarity=0.822 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 008611 516 IATLKAEKEELE 527 (559)
Q Consensus 516 ~~~l~~e~~~~~ 527 (559)
+..|..++.++.
T Consensus 39 l~~l~~~r~~l~ 50 (120)
T PF12325_consen 39 LARLEAERDELR 50 (120)
T ss_pred HHHHHHHHHHHH
Confidence 444444443333
No 318
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=50.19 E-value=42 Score=32.77 Aligned_cols=17 Identities=18% Similarity=0.161 Sum_probs=7.0
Q ss_pred HHhhhHHHHHHHHHhhh
Q 008611 535 LQSIQLKQDLTEAESQN 551 (559)
Q Consensus 535 ~~~~~l~~~~~~~~~~~ 551 (559)
.++++.+++++-.++||
T Consensus 197 ~KIekkk~ELER~qKRL 213 (267)
T PF10234_consen 197 AKIEKKKQELERNQKRL 213 (267)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444444444444
No 319
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=50.06 E-value=36 Score=38.93 Aligned_cols=48 Identities=21% Similarity=0.292 Sum_probs=36.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 511 TTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 511 ~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
..+.+++.+++.+..+++++++.-..+.++++++++++.++..|.+|.
T Consensus 174 hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~ 221 (1195)
T KOG4643|consen 174 HLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEI 221 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344557777777777888888888888888888888888887777765
No 320
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.05 E-value=8.1 Score=42.54 Aligned_cols=31 Identities=23% Similarity=0.317 Sum_probs=14.8
Q ss_pred CCCCChhhhhhHHHH-hcC----CCCCHHHHHHHHH
Q 008611 65 PSSWSPVEQSKWKSW-QGL----GNMATTEAMRLFV 95 (559)
Q Consensus 65 p~~~~~~~~~k~~aw-~~~----~~~s~~~a~~~yv 95 (559)
|+.....+|.|+++= .+| +=|+-+.|+.-|+
T Consensus 7 ~WavT~~Er~K~~~qF~~Lkp~~gfitg~qArnffl 42 (1118)
T KOG1029|consen 7 PWAVTDEERQKHDAQFGQLKPGQGFITGDQARNFFL 42 (1118)
T ss_pred ccccchHHHHHHHHHHhccCCCCCccchHhhhhhHH
Confidence 444445566665552 222 2234555555554
No 321
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=49.95 E-value=2.9e+02 Score=30.04 Aligned_cols=86 Identities=19% Similarity=0.234 Sum_probs=44.3
Q ss_pred EEECCCCeEEEeccCCCCCCCcc---ceEEE-EECCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCccccc
Q 008611 276 VFDLQTCSWSTLKTYGKPPVSRG---GQSVT-LVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDH 351 (559)
Q Consensus 276 ~yd~~t~~W~~~~~~g~~p~~r~---~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~ 351 (559)
.-.|....|+.+++..++-.--. +...+ ..++++|.--| |-++|+..+.|..+. .||...
T Consensus 212 ~~~P~GraW~~i~~~t~L~qISagPtg~VwAvt~nG~vf~R~G----------VsRqNp~GdsWkdI~------tP~~a~ 275 (705)
T KOG3669|consen 212 VDRPCGRAWKVICPYTDLSQISAGPTGVVWAVTENGAVFYREG----------VSRQNPEGDSWKDIV------TPRQAL 275 (705)
T ss_pred CCCCCCceeeecCCCCccceEeecCcceEEEEeeCCcEEEEec----------ccccCCCCchhhhcc------Cccccc
Confidence 34577788888864322211111 11122 23556665444 446788899998764 333332
Q ss_pred EEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEecc
Q 008611 352 AAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (559)
Q Consensus 352 ~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~~ 390 (559)
..+.+ -+| ...+|++|...+-|..-.
T Consensus 276 ~~v~i------SvG-------t~t~Waldndg~lwfrrg 301 (705)
T KOG3669|consen 276 EPVCI------SVG-------TQTLWALDNDGNLWFRRG 301 (705)
T ss_pred ceEEE------Eec-------cceEEEEecCCcEEEEec
Confidence 11111 111 134777777777776643
No 322
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=49.67 E-value=2.8e+02 Score=27.66 Aligned_cols=97 Identities=14% Similarity=0.227 Sum_probs=54.8
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCCCCCcceE
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQV 274 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v 274 (559)
++.||+.=+ .+..---+|..|..++.-+.+... |.. -.+...+-.+|-+ .....-.+.+
T Consensus 117 ~D~LLlAR~--DGh~nLGvy~ldr~~g~~~~L~~~-------------ps~---KG~~~~D~a~F~i---~~~~~g~~~i 175 (339)
T PF09910_consen 117 EDRLLLARA--DGHANLGVYSLDRRTGKAEKLSSN-------------PSL---KGTLVHDYACFGI---NNFHKGVSGI 175 (339)
T ss_pred cCEEEEEec--CCcceeeeEEEcccCCceeeccCC-------------CCc---CceEeeeeEEEec---cccccCCceE
Confidence 456666532 222223578888888888877542 111 2233333333322 2233567889
Q ss_pred EEEECCCCeE--EEecc----CCCCCCCccceEEEEECCEEEEE
Q 008611 275 KVFDLQTCSW--STLKT----YGKPPVSRGGQSVTLVGTSLVIF 312 (559)
Q Consensus 275 ~~yd~~t~~W--~~~~~----~g~~p~~r~~~~~~~~~~~lyv~ 312 (559)
.+||+.+++| +.... .|.....+..-.++...+++|.|
T Consensus 176 ~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF 219 (339)
T PF09910_consen 176 HCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAF 219 (339)
T ss_pred EEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEE
Confidence 9999999999 54432 22222334444566677877776
No 323
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=49.61 E-value=28 Score=34.21 Aligned_cols=27 Identities=15% Similarity=0.129 Sum_probs=10.3
Q ss_pred HHHHHHhhhHHHHHHHHHhhhhhHhhh
Q 008611 531 SKEKLQSIQLKQDLTEAESQNTDLYKV 557 (559)
Q Consensus 531 ~~~~~~~~~l~~~~~~~~~~~~~~~ke 557 (559)
.+.+.++..|+.+.+.+++++++|++|
T Consensus 218 ~e~~~r~~~leken~~lr~~v~~l~~e 244 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVEQLKKE 244 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 324
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=49.60 E-value=56 Score=28.45 Aligned_cols=42 Identities=19% Similarity=0.307 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhH
Q 008611 513 EHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDL 554 (559)
Q Consensus 513 ~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 554 (559)
+..++.|..++++++++++..+.++.+|...+.+.+.-++.+
T Consensus 5 ~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l 46 (140)
T PRK03947 5 EQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETL 46 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777777777777777777777777666655444
No 325
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=49.60 E-value=1.9e+02 Score=25.75 Aligned_cols=126 Identities=11% Similarity=0.107 Sum_probs=0.0
Q ss_pred EEECCEEEEEcCcCCCCCCcCceEEEECCCCce-EEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEE-
Q 008611 303 TLVGTSLVIFGGEDAKRSLLNDLHILDLETMTW-DEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLD- 380 (559)
Q Consensus 303 ~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W-~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d- 380 (559)
+.++|.+|=++-........ -|..||+.+.++ ..++.............+.++.++.|-++-- ......-+||+.+
T Consensus 2 V~vnG~~hW~~~~~~~~~~~-~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~-~~~~~~~~IWvm~~ 79 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDEKD-FILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQ-CDETSKIEIWVMKK 79 (164)
T ss_pred EEECCEEEeeEEecCCCCce-EEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEe-ccCCccEEEEEEee
Q ss_pred --CCCCeeEeccCCCCCCCCccccEEEEECCceec----ceeeeeeccCCC---cEEEEEc
Q 008611 381 --LQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFL----GLSLVVSSYSGE---DVIVAFG 432 (559)
Q Consensus 381 --~~~~~W~~~~~~~~~p~~R~~hs~~~~~~~~~i----G~s~~~~~~~~~---~~l~v~G 432 (559)
....+|+++-..+..+.+....... +..+++ .+-++.....+. +.++++|
T Consensus 80 ~~~~~~SWtK~~~i~~~~~~~~~~~~~--~~~~~i~~~~~vlv~~~~~~~~~~~~~i~i~g 138 (164)
T PF07734_consen 80 YGYGKESWTKLFTIDLPPLPSLFFHFR--NPSFFIDEEKKVLVCCDKETQREEKNKIYIVG 138 (164)
T ss_pred eccCcceEEEEEEEecCCCCCcccccc--cceEEEeCCCeEEEEEcCCCCccceeEEEEEc
No 326
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=49.55 E-value=22 Score=34.41 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=13.7
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 008611 508 HPETTEHLIATLKAEKEELESSLSKEKL 535 (559)
Q Consensus 508 ~~~~~~~~~~~l~~e~~~~~~~l~~~~~ 535 (559)
++++.+..+++-..|+.+++.||..+++
T Consensus 76 kLkes~~~l~dRetEI~eLksQL~RMrE 103 (305)
T PF15290_consen 76 KLKESENRLHDRETEIDELKSQLARMRE 103 (305)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3444444444444555555555554443
No 327
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=49.54 E-value=3.5e+02 Score=28.79 Aligned_cols=147 Identities=16% Similarity=0.163 Sum_probs=69.3
Q ss_pred CEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe--CCEEEEEeccCCCCCCcce
Q 008611 196 DKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHTKDPSEIIQ 273 (559)
Q Consensus 196 ~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~ 273 (559)
+.+++.|+.+ ..|.++|+.+.+-...-. ....+-+++.+ ++.+++.+.++ ..
T Consensus 258 g~~i~Sgs~D-----~tvriWd~~~~~~~~~l~---------------~hs~~is~~~f~~d~~~l~s~s~d------~~ 311 (456)
T KOG0266|consen 258 GNLLVSGSDD-----GTVRIWDVRTGECVRKLK---------------GHSDGISGLAFSPDGNLLVSASYD------GT 311 (456)
T ss_pred CCEEEEecCC-----CcEEEEeccCCeEEEeee---------------ccCCceEEEEECCCCCEEEEcCCC------cc
Confidence 4677777643 357777777744433211 11112222333 56777776553 35
Q ss_pred EEEEECCCCeEE--EeccCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCC-ccc
Q 008611 274 VKVFDLQTCSWS--TLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPS-PRS 349 (559)
Q Consensus 274 v~~yd~~t~~W~--~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~-~r~ 349 (559)
+.+||+.+..-. ..-. ....+. ....+.. .+-.|++-+..+ +.+-.+|+....-...... ... .+.
T Consensus 312 i~vwd~~~~~~~~~~~~~--~~~~~~-~~~~~~fsp~~~~ll~~~~d-----~~~~~w~l~~~~~~~~~~~--~~~~~~~ 381 (456)
T KOG0266|consen 312 IRVWDLETGSKLCLKLLS--GAENSA-PVTSVQFSPNGKYLLSASLD-----RTLKLWDLRSGKSVGTYTG--HSNLVRC 381 (456)
T ss_pred EEEEECCCCceeeeeccc--CCCCCC-ceeEEEECCCCcEEEEecCC-----CeEEEEEccCCcceeeecc--cCCccee
Confidence 889999888732 2211 111111 1222222 344444444322 2355566654432221110 011 133
Q ss_pred ccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCC
Q 008611 350 DHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQT 383 (559)
Q Consensus 350 ~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~ 383 (559)
.+..+...++..++.|+.+ ..+++||+.+
T Consensus 382 ~~~~~~~~~~~~i~sg~~d-----~~v~~~~~~s 410 (456)
T KOG0266|consen 382 IFSPTLSTGGKLIYSGSED-----GSVYVWDSSS 410 (456)
T ss_pred EecccccCCCCeEEEEeCC-----ceEEEEeCCc
Confidence 3344444455455555532 4588888876
No 328
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.52 E-value=3.1e+02 Score=28.20 Aligned_cols=156 Identities=19% Similarity=0.243 Sum_probs=75.7
Q ss_pred CEEEEEccCCCCcccCcEEEEEcCCC--eEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCC----CC
Q 008611 196 DKMYIYGGNHNGRYLSDMHILDLRSW--AWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKD----PS 269 (559)
Q Consensus 196 ~~lyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~----~~ 269 (559)
.+|+.+||..+ .+.+.++|+.+. .|+.... |.-+-+--.-++.-.|-.+-|.... ..
T Consensus 161 p~Iva~GGke~---~n~lkiwdle~~~qiw~aKNv--------------pnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T 223 (412)
T KOG3881|consen 161 PYIVATGGKEN---INELKIWDLEQSKQIWSAKNV--------------PNDRLGLRVPVWITDIRFLEGSPNYKFATIT 223 (412)
T ss_pred CceEecCchhc---ccceeeeecccceeeeeccCC--------------CCccccceeeeeeccceecCCCCCceEEEEe
Confidence 46888898433 566777777654 4654422 2222222222222222111110000 12
Q ss_pred CcceEEEEECCCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCccc
Q 008611 270 EIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRS 349 (559)
Q Consensus 270 ~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~ 349 (559)
....+..||+.... ..+....-+-.+..+.+.+.-++. +++|-. ..++..||+.+..---....|..-..|+
T Consensus 224 ~~hqvR~YDt~~qR-RPV~~fd~~E~~is~~~l~p~gn~-Iy~gn~------~g~l~~FD~r~~kl~g~~~kg~tGsirs 295 (412)
T KOG3881|consen 224 RYHQVRLYDTRHQR-RPVAQFDFLENPISSTGLTPSGNF-IYTGNT------KGQLAKFDLRGGKLLGCGLKGITGSIRS 295 (412)
T ss_pred cceeEEEecCcccC-cceeEeccccCcceeeeecCCCcE-EEEecc------cchhheecccCceeeccccCCccCCcce
Confidence 35568889988544 222221122233333333333444 444432 4568899998876544432222233333
Q ss_pred ccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCC
Q 008611 350 DHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTM 384 (559)
Q Consensus 350 ~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~ 384 (559)
..++....++..+|-+ .-+-+||+.++
T Consensus 296 ---ih~hp~~~~las~GLD-----RyvRIhD~ktr 322 (412)
T KOG3881|consen 296 ---IHCHPTHPVLASCGLD-----RYVRIHDIKTR 322 (412)
T ss_pred ---EEEcCCCceEEeeccc-----eeEEEeecccc
Confidence 3344454577777753 23678888773
No 329
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=49.32 E-value=16 Score=42.04 Aligned_cols=35 Identities=29% Similarity=0.340 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 524 EELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 524 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
+.++.++.+.+.++.+|+++++.++.++.+|..|+
T Consensus 390 ~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~ 424 (1074)
T KOG0250|consen 390 NELGSELEERENKLEQLKKEVEKLEEQINSLREEL 424 (1074)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444555555555555555554443
No 330
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=49.29 E-value=13 Score=21.49 Aligned_cols=12 Identities=25% Similarity=0.445 Sum_probs=5.1
Q ss_pred HHHHHHHHHhhh
Q 008611 540 LKQDLTEAESQN 551 (559)
Q Consensus 540 l~~~~~~~~~~~ 551 (559)
++..+.++|++|
T Consensus 6 lr~rI~dLer~L 17 (23)
T PF04508_consen 6 LRNRISDLERQL 17 (23)
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 331
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=49.02 E-value=78 Score=25.95 Aligned_cols=20 Identities=35% Similarity=0.424 Sum_probs=11.4
Q ss_pred chHHHHHHHHHHHHHHHHHH
Q 008611 511 TTEHLIATLKAEKEELESSL 530 (559)
Q Consensus 511 ~~~~~~~~l~~e~~~~~~~l 530 (559)
..+.....+..|++++...|
T Consensus 12 ~ae~~~~~ie~ElEeLTasL 31 (100)
T PF06428_consen 12 EAEQEKEQIESELEELTASL 31 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666554
No 332
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=48.88 E-value=44 Score=31.90 Aligned_cols=42 Identities=24% Similarity=0.275 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhh
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKV 557 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ke 557 (559)
++.+......++..+.+......+|+.++.++++++.+++.+
T Consensus 94 ~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~ 135 (225)
T COG1842 94 KQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAK 135 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555555555555555555555555443
No 333
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=48.83 E-value=43 Score=29.65 Aligned_cols=36 Identities=31% Similarity=0.411 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQN 551 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 551 (559)
++.|+.+++++++.+...+.+..+++.++..++..+
T Consensus 75 ~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~ 110 (151)
T PF11559_consen 75 VERLKEQLEELERELASAEEKERQLQKQLKSLEAKL 110 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444333333
No 334
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=48.62 E-value=69 Score=21.98 Aligned_cols=33 Identities=21% Similarity=0.330 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q 008611 517 ATLKAEKEELESSLSKEKLQSIQLKQDLTEAES 549 (559)
Q Consensus 517 ~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~ 549 (559)
..|+..-..+...-...+++++.|+.++..+..
T Consensus 8 ~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~ 40 (45)
T PF02183_consen 8 DALKASYDSLKAEYDSLKKENEKLRAEVQELKE 40 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555544443
No 335
>PRK00846 hypothetical protein; Provisional
Probab=48.60 E-value=75 Score=24.63 Aligned_cols=39 Identities=10% Similarity=0.122 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhH
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDL 554 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 554 (559)
+.-...-++++-..+-+.++++..|+.++.-+..++.+.
T Consensus 22 lAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 22 LSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333334444444555555555555555555555555443
No 336
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=48.28 E-value=57 Score=28.55 Aligned_cols=18 Identities=17% Similarity=0.390 Sum_probs=7.1
Q ss_pred hhhHHHHHHHHHhhhhhH
Q 008611 537 SIQLKQDLTEAESQNTDL 554 (559)
Q Consensus 537 ~~~l~~~~~~~~~~~~~~ 554 (559)
...|.+++++.+.++.+|
T Consensus 82 k~~L~k~lq~~q~kv~eL 99 (140)
T PF10473_consen 82 KENLDKELQKKQEKVSEL 99 (140)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333444444444333
No 337
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=47.92 E-value=48 Score=31.14 Aligned_cols=42 Identities=29% Similarity=0.398 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhh
Q 008611 515 LIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYK 556 (559)
Q Consensus 515 ~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~k 556 (559)
.......++..++.+|...+-+++.|+..|++..+++++|++
T Consensus 155 v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtk 196 (207)
T PF05010_consen 155 VRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTK 196 (207)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555556666677777777777777777777777664
No 338
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=47.81 E-value=54 Score=27.84 Aligned_cols=39 Identities=31% Similarity=0.349 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhH
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDL 554 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 554 (559)
+.-+.+.++.++.++...+.++.+++.++.+.+..++++
T Consensus 89 ~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 89 IEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555555555555555555555555555443
No 339
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=47.67 E-value=44 Score=28.44 Aligned_cols=31 Identities=23% Similarity=0.247 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhhhh
Q 008611 522 EKEELESSLSKEKLQSIQLKQDLTEAESQNT 552 (559)
Q Consensus 522 e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~ 552 (559)
+++++|.+....++|+++|++++..+..++.
T Consensus 75 Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~d 105 (135)
T KOG4196|consen 75 QKHELEKEKAELQQQVEKLKEENSRLRRELD 105 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666665553
No 340
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.38 E-value=28 Score=33.99 Aligned_cols=27 Identities=15% Similarity=0.170 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 008611 520 KAEKEELESSLSKEKLQSIQLKQDLTE 546 (559)
Q Consensus 520 ~~e~~~~~~~l~~~~~~~~~l~~~~~~ 546 (559)
++||+..|++|+...+|+...|++++.
T Consensus 66 q~eL~~rqeEL~Rke~ELdRREr~~a~ 92 (313)
T KOG3088|consen 66 QAELLKKQEELRRKEQELDRRERALAR 92 (313)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 344444444444444444444444443
No 341
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=47.32 E-value=59 Score=27.08 Aligned_cols=40 Identities=25% Similarity=0.278 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHh
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLY 555 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 555 (559)
++++..+.+.++++++....+..+|+.++.+.+.-+.+++
T Consensus 5 ~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~ 44 (110)
T TIGR02338 5 VQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELE 44 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777777777777777777766665554
No 342
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=47.10 E-value=18 Score=38.42 Aligned_cols=28 Identities=25% Similarity=0.299 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q 008611 522 EKEELESSLSKEKLQSIQLKQDLTEAES 549 (559)
Q Consensus 522 e~~~~~~~l~~~~~~~~~l~~~~~~~~~ 549 (559)
++++|+++|+++++|...++.++++.|+
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v~k~e~ 59 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRVDKVEK 59 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccccchhhH
Confidence 6666666555555555555544444433
No 343
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=47.04 E-value=51 Score=27.31 Aligned_cols=36 Identities=19% Similarity=0.349 Sum_probs=14.0
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHhhhHHHHHHHHHhhh
Q 008611 516 IATLKAEKEEL--ESSLSKEKLQSIQLKQDLTEAESQN 551 (559)
Q Consensus 516 ~~~l~~e~~~~--~~~l~~~~~~~~~l~~~~~~~~~~~ 551 (559)
++.++.+++.+ ...+.+.+.++.+++-++...+.++
T Consensus 51 l~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l 88 (106)
T PF10805_consen 51 LQALETKLEHLPTRDDVHDLQLELAELRGELKELSARL 88 (106)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33333333333 3333333333333333333333333
No 344
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=46.86 E-value=3.5e+02 Score=28.00 Aligned_cols=100 Identities=13% Similarity=0.093 Sum_probs=54.2
Q ss_pred CCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCCCCCcceEEEEECCCCeEEEecc--CCCCCCCc
Q 008611 220 SWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKT--YGKPPVSR 297 (559)
Q Consensus 220 t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~--~g~~p~~r 297 (559)
.+.|+.+..+ .-..--++.++|++|++.- ...++.++..- .-+.+.+ .+.+....
T Consensus 189 ~~~Wt~l~~~---------------~~~~~DIi~~kGkfYAvD~-------~G~l~~i~~~l-~i~~v~~~i~~~~~~g~ 245 (373)
T PLN03215 189 GNVLKALKQM---------------GYHFSDIIVHKGQTYALDS-------IGIVYWINSDL-EFSRFGTSLDENITDGC 245 (373)
T ss_pred CCeeeEccCC---------------CceeeEEEEECCEEEEEcC-------CCeEEEEecCC-ceeeecceecccccCCc
Confidence 3899988532 2224457778999999822 23466666321 1122211 01111111
Q ss_pred --cceEEEEECCEEEEEcCcCCCC-------------CCcCceEEEECCCCceEEecCCC
Q 008611 298 --GGQSVTLVGTSLVIFGGEDAKR-------------SLLNDLHILDLETMTWDEIDAVG 342 (559)
Q Consensus 298 --~~~~~~~~~~~lyv~GG~~~~~-------------~~~~~~~~yd~~t~~W~~~~~~~ 342 (559)
...-.+...+.|+++....... ...-.|+.+|.+..+|.++...+
T Consensus 246 ~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLg 305 (373)
T PLN03215 246 WTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLG 305 (373)
T ss_pred ccCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccC
Confidence 1233555677888887742110 01124667788889999998764
No 345
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=46.70 E-value=37 Score=36.73 Aligned_cols=12 Identities=17% Similarity=0.158 Sum_probs=5.9
Q ss_pred HHhhhhhHhhhh
Q 008611 547 AESQNTDLYKVI 558 (559)
Q Consensus 547 ~~~~~~~~~kel 558 (559)
++.++..|+++|
T Consensus 479 ~~~~I~~L~~~L 490 (652)
T COG2433 479 RDRRIERLEKEL 490 (652)
T ss_pred HHHHHHHHHHHH
Confidence 344445555554
No 346
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=46.68 E-value=20 Score=37.42 Aligned_cols=43 Identities=23% Similarity=0.220 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
...-++..+.+|.++..-..|+++|+++++++|.+...|-.+|
T Consensus 267 RrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL 309 (472)
T KOG0709|consen 267 RRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQL 309 (472)
T ss_pred HHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHH
Confidence 3344455566677777777777777777777777776666655
No 347
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=46.64 E-value=42 Score=33.28 Aligned_cols=33 Identities=15% Similarity=0.347 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAE 548 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~ 548 (559)
+..++.++++++.++++.++++.+++++++...
T Consensus 72 ~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~ 104 (302)
T PF10186_consen 72 LERLRERIERLRKRIEQKRERLEELRESLEQRR 104 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444443333
No 348
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=46.63 E-value=47 Score=27.18 Aligned_cols=28 Identities=14% Similarity=0.281 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 008611 521 AEKEELESSLSKEKLQSIQLKQDLTEAESQN 551 (559)
Q Consensus 521 ~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 551 (559)
++|+.++.+|.+ +....+++|++++..|
T Consensus 72 EqL~~Lk~kl~~---e~~~~~k~i~~le~~I 99 (100)
T PF04568_consen 72 EQLKKLKEKLKE---EIEHHRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHhc
Confidence 445555555444 2222444455544443
No 349
>PF15458 NTR2: Nineteen complex-related protein 2
Probab=46.41 E-value=58 Score=31.72 Aligned_cols=48 Identities=21% Similarity=0.275 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhhC
Q 008611 512 TEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVIA 559 (559)
Q Consensus 512 ~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kelq 559 (559)
....++.|...+..++.+..+.+.+++.|+.+..++..+..++..+|+
T Consensus 206 L~~~~~rL~~~l~~le~~~~~~~~~l~~l~~E~~~I~~re~elq~~l~ 253 (254)
T PF15458_consen 206 LSECLERLRESLSSLEDSKSQLQQQLESLEKEKEEIEEREKELQELLK 253 (254)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344467777888888888888888888888888888887777776653
No 350
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=46.38 E-value=58 Score=33.49 Aligned_cols=50 Identities=16% Similarity=0.189 Sum_probs=35.5
Q ss_pred CcchHHHHHHHHHHHHHHH---HHHHHHHHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 509 PETTEHLIATLKAEKEELE---SSLSKEKLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 509 ~~~~~~~~~~l~~e~~~~~---~~l~~~~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
..+.+..+.+|..|+++.+ .++++.+++.++|.+++..++..|..|...|
T Consensus 86 ~~~H~lml~RL~~EL~~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L 138 (355)
T PF09766_consen 86 DDEHQLMLARLEFELEQRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQL 138 (355)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3556666888887776555 6667777777777788888888777776655
No 351
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=46.37 E-value=44 Score=32.76 Aligned_cols=41 Identities=20% Similarity=0.131 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhH
Q 008611 514 HLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDL 554 (559)
Q Consensus 514 ~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 554 (559)
..-+.+..|++.++.+.++.+.+...|+.||+.+.+-+.+.
T Consensus 248 ae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~ 288 (294)
T KOG4571|consen 248 AEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEV 288 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666666666666665443
No 352
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=46.34 E-value=24 Score=34.48 Aligned_cols=43 Identities=9% Similarity=0.161 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
++.+..++++.+.++.........|+.+++.+.++++..+|.|
T Consensus 171 i~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL 213 (267)
T PF10234_consen 171 IKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRL 213 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555555555555555555555544
No 353
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=45.96 E-value=77 Score=24.37 Aligned_cols=48 Identities=25% Similarity=0.295 Sum_probs=30.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhh--------hHHHHHHHHHhhhhhHhhhh
Q 008611 511 TTEHLIATLKAEKEELESSLSKEKLQSI--------QLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 511 ~~~~~~~~l~~e~~~~~~~l~~~~~~~~--------~l~~~~~~~~~~~~~~~kel 558 (559)
+....+.+++..+.+.+.-+.++..++. ++..++......+..+.++|
T Consensus 22 ~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l 77 (79)
T PF05008_consen 22 QRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKEL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444566666666666666666655543 35567777777777777776
No 354
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=45.89 E-value=67 Score=24.67 Aligned_cols=37 Identities=27% Similarity=0.350 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 008611 515 LIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQN 551 (559)
Q Consensus 515 ~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 551 (559)
+|..|..+..+.+.++.....++..++.+++.++.++
T Consensus 34 ~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 34 TIKKLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555555555555555444444554444443
No 355
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=45.70 E-value=60 Score=27.21 Aligned_cols=40 Identities=30% Similarity=0.391 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHh
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLY 555 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 555 (559)
+.-+.+.+..++.+++..+.++.+++.++...+..++++.
T Consensus 79 ~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 118 (120)
T PF02996_consen 79 IEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQLY 118 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444445555555555555555555555555544443
No 356
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=45.59 E-value=41 Score=32.86 Aligned_cols=44 Identities=23% Similarity=0.309 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 515 LIATLKAEKEELESSLSKE--KLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 515 ~~~~l~~e~~~~~~~l~~~--~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
.+..++++.+.+.+-+++. .+++.+++++|.+.+.+++.++.++
T Consensus 140 rl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~ 185 (262)
T PF14257_consen 140 RLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQL 185 (262)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444333322 2333445555555555555444443
No 357
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=45.43 E-value=55 Score=30.91 Aligned_cols=45 Identities=24% Similarity=0.142 Sum_probs=20.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhH
Q 008611 510 ETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDL 554 (559)
Q Consensus 510 ~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 554 (559)
++.++.+.+|.+|-+.++...+..+.+++-|-.+..++..+++.+
T Consensus 93 ~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~ 137 (292)
T KOG4005|consen 93 EEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELL 137 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 445555555555555555444444444433333333333333333
No 358
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=45.39 E-value=3.9e+02 Score=28.14 Aligned_cols=30 Identities=20% Similarity=0.310 Sum_probs=19.7
Q ss_pred EEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeE
Q 008611 353 AAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWS 387 (559)
Q Consensus 353 ~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~ 387 (559)
.++-.++.+++.|+.+ +.+.++|+.+.+.-
T Consensus 283 Lais~DgtlLlSGd~d-----g~VcvWdi~S~Q~i 312 (476)
T KOG0646|consen 283 LAISTDGTLLLSGDED-----GKVCVWDIYSKQCI 312 (476)
T ss_pred EEEecCccEEEeeCCC-----CCEEEEecchHHHH
Confidence 3344477799999865 34677887766543
No 359
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=45.36 E-value=17 Score=31.22 Aligned_cols=46 Identities=20% Similarity=0.285 Sum_probs=20.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhh
Q 008611 511 TTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYK 556 (559)
Q Consensus 511 ~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~k 556 (559)
+....+..+..+++.+..+....+.++..|+.++.+.+....++.+
T Consensus 22 eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~ 67 (131)
T PF05103_consen 22 EVDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQR 67 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 3445566666666666666666666666666666666554444443
No 360
>PRK11546 zraP zinc resistance protein; Provisional
Probab=45.28 E-value=62 Score=28.36 Aligned_cols=40 Identities=3% Similarity=-0.037 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHhhhHHHHHHHHHhhhh
Q 008611 513 EHLIATLKAEKEELESSLSKE-------KLQSIQLKQDLTEAESQNT 552 (559)
Q Consensus 513 ~~~~~~l~~e~~~~~~~l~~~-------~~~~~~l~~~~~~~~~~~~ 552 (559)
......|++++...+.+|+.+ ++.+.+|.+|+.+++.+|.
T Consensus 60 ~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~ 106 (143)
T PRK11546 60 YAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLD 106 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443 2234445555555555443
No 361
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=45.23 E-value=38 Score=26.50 Aligned_cols=16 Identities=13% Similarity=0.248 Sum_probs=6.6
Q ss_pred HHhhhHHHHHHHHHhh
Q 008611 535 LQSIQLKQDLTEAESQ 550 (559)
Q Consensus 535 ~~~~~l~~~~~~~~~~ 550 (559)
.++.+|+++|-++|..
T Consensus 16 ~~L~~lE~qIy~~Et~ 31 (80)
T PF09340_consen 16 KDLAALEKQIYDKETS 31 (80)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444444443
No 362
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.17 E-value=8.2 Score=42.48 Aligned_cols=17 Identities=12% Similarity=0.085 Sum_probs=8.3
Q ss_pred CChhhHHHHhhheeeee
Q 008611 40 FSNDSALLLYALYQQAT 56 (559)
Q Consensus 40 ~~~~~~l~ly~l~kqa~ 56 (559)
++++++++-.+-|.|-+
T Consensus 10 vT~~Er~K~~~qF~~Lk 26 (1118)
T KOG1029|consen 10 VTDEERQKHDAQFGQLK 26 (1118)
T ss_pred cchHHHHHHHHHHhccC
Confidence 44555555555444443
No 363
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=45.13 E-value=44 Score=30.24 Aligned_cols=9 Identities=33% Similarity=0.512 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 008611 518 TLKAEKEEL 526 (559)
Q Consensus 518 ~l~~e~~~~ 526 (559)
+|.+++.++
T Consensus 49 ~L~~e~~~l 57 (228)
T PRK06800 49 SLHKELNQL 57 (228)
T ss_pred HHHHHHHHH
Confidence 333333333
No 364
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=44.96 E-value=92 Score=23.59 Aligned_cols=39 Identities=28% Similarity=0.331 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 008611 513 EHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQN 551 (559)
Q Consensus 513 ~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 551 (559)
+..+..|+..+..+.++++..+..+..|..+.+.+..++
T Consensus 4 ea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l 42 (69)
T PF14197_consen 4 EAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQL 42 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666555555554444443333
No 365
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=44.92 E-value=56 Score=33.72 Aligned_cols=17 Identities=12% Similarity=0.108 Sum_probs=8.0
Q ss_pred HHHHHHHhhhhhHhhhh
Q 008611 542 QDLTEAESQNTDLYKVI 558 (559)
Q Consensus 542 ~~~~~~~~~~~~~~kel 558 (559)
+++++++.+|++.|+||
T Consensus 309 kelE~lR~~L~kAEkel 325 (575)
T KOG4403|consen 309 KELEQLRVALEKAEKEL 325 (575)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444444
No 366
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=44.82 E-value=45 Score=37.75 Aligned_cols=46 Identities=28% Similarity=0.312 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 513 EHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 513 ~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
.+.++.+.+|++.+...+.+..++.+.|+.+++++|..+++|..++
T Consensus 395 k~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQV 440 (1243)
T KOG0971|consen 395 KQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQV 440 (1243)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3347778888888888888888888888888888888887776653
No 367
>PF04576 Zein-binding: Zein-binding; InterPro: IPR007656 This is a family of uncharacterised proteins.
Probab=44.78 E-value=80 Score=25.44 Aligned_cols=44 Identities=23% Similarity=0.190 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHH-----------HHHHHHhhhHHHHHHHHHhhhhhHhhhhC
Q 008611 516 IATLKAEKEELESSL-----------SKEKLQSIQLKQDLTEAESQNTDLYKVIA 559 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l-----------~~~~~~~~~l~~~~~~~~~~~~~~~kelq 559 (559)
|..|++|+..++-.. .--++.++.|+.-+.+.+.++..|+.||+
T Consensus 40 I~RLQ~EKAa~~mEA~Qy~Rm~EEk~~yD~e~ie~L~~~l~~rE~e~~~Le~ele 94 (94)
T PF04576_consen 40 ILRLQEEKAAVEMEARQYQRMAEEKAEYDQEAIESLKDILYKREKEIQSLEAELE 94 (94)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 777887777666332 22344456677777778888888888875
No 368
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=44.75 E-value=55 Score=26.65 Aligned_cols=44 Identities=27% Similarity=0.308 Sum_probs=32.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhH
Q 008611 511 TTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDL 554 (559)
Q Consensus 511 ~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 554 (559)
..+..+..|.+.++.++..+.....+...++.++.+.+..|.++
T Consensus 59 ~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~~ 102 (106)
T PF01920_consen 59 DKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYEL 102 (106)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888888888887777777777777777766544
No 369
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=44.67 E-value=61 Score=25.55 Aligned_cols=33 Identities=24% Similarity=0.353 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAE 548 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~ 548 (559)
+..+..+++..+.++.+.|..+..|+.+..++|
T Consensus 3 leKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~E 35 (83)
T PF14193_consen 3 LEKIRAEIEKTKEKIAELQARLKELEAQKTEAE 35 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666555555555544
No 370
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=44.63 E-value=41 Score=23.36 Aligned_cols=19 Identities=21% Similarity=0.225 Sum_probs=10.2
Q ss_pred HHHHHHHHHhhhhhHhhhh
Q 008611 540 LKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 540 l~~~~~~~~~~~~~~~kel 558 (559)
|.++++++.++++.||..+
T Consensus 28 Lt~kL~~vs~RLe~LEn~~ 46 (47)
T PF10393_consen 28 LTQKLDAVSKRLEALENRL 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 4444555555555555544
No 371
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=44.58 E-value=41 Score=33.45 Aligned_cols=45 Identities=11% Similarity=0.155 Sum_probs=29.4
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhh
Q 008611 508 HPETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNT 552 (559)
Q Consensus 508 ~~~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~ 552 (559)
++.+....+..|..++....+.....|+++.+|..++.+++++++
T Consensus 207 QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k 251 (306)
T PF04849_consen 207 QLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCK 251 (306)
T ss_pred HhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444556777777777777777777777777777777666653
No 372
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=44.50 E-value=54 Score=33.57 Aligned_cols=39 Identities=26% Similarity=0.257 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 008611 513 EHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQN 551 (559)
Q Consensus 513 ~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 551 (559)
+..+++.+.++.+++.+++..+.+.+....+..+++.++
T Consensus 234 ~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~ 272 (344)
T PF12777_consen 234 EEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEI 272 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444333333333333
No 373
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=44.45 E-value=32 Score=30.97 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=9.4
Q ss_pred hHHHHHHHHHhhhhhHhhh
Q 008611 539 QLKQDLTEAESQNTDLYKV 557 (559)
Q Consensus 539 ~l~~~~~~~~~~~~~~~ke 557 (559)
+|++++++++.+++++.++
T Consensus 70 Kl~Rk~~kl~~el~~~~~~ 88 (161)
T PF04420_consen 70 KLNRKLDKLEEELEKLNKS 88 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3555555555555444443
No 374
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=44.22 E-value=43 Score=37.61 Aligned_cols=42 Identities=24% Similarity=0.220 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhh
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKV 557 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ke 557 (559)
++.+.+++++++.++.+.+.++..+++++.++++++++++++
T Consensus 423 i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~ 464 (650)
T TIGR03185 423 IAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKT 464 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444443
No 375
>PLN00181 protein SPA1-RELATED; Provisional
Probab=43.92 E-value=5.6e+02 Score=29.51 Aligned_cols=61 Identities=21% Similarity=0.331 Sum_probs=31.8
Q ss_pred CCEEEEEeccCCCCCCcceEEEEECCCCe--EEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCC
Q 008611 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCS--WSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLET 332 (559)
Q Consensus 255 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t 332 (559)
++.+++.|+.+. .+.+||+.+.. ...+. + ...+. ..+...++..++.|+.++ .+.+||+.+
T Consensus 629 ~g~~latgs~dg------~I~iwD~~~~~~~~~~~~--~-h~~~V--~~v~f~~~~~lvs~s~D~------~ikiWd~~~ 691 (793)
T PLN00181 629 SGRSLAFGSADH------KVYYYDLRNPKLPLCTMI--G-HSKTV--SYVRFVDSSTLVSSSTDN------TLKLWDLSM 691 (793)
T ss_pred CCCEEEEEeCCC------eEEEEECCCCCccceEec--C-CCCCE--EEEEEeCCCEEEEEECCC------EEEEEeCCC
Confidence 467777777543 58889987643 22221 0 00111 122223556666676543 366777754
No 376
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=43.74 E-value=4.1e+02 Score=27.87 Aligned_cols=120 Identities=13% Similarity=0.173 Sum_probs=57.5
Q ss_pred cceeEEe-CCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEE-ECCEEEEEcCcCCCCCCcCce
Q 008611 248 GHSLIPW-ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTL-VGTSLVIFGGEDAKRSLLNDL 325 (559)
Q Consensus 248 ~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~ 325 (559)
.++++.+ +|.||..|-.+ ..+-+||+.+.. .++ ..|.--.-..... ..|-.|+.-+.+.. .+
T Consensus 350 ~ts~~fHpDgLifgtgt~d------~~vkiwdlks~~--~~a---~Fpght~~vk~i~FsENGY~Lat~add~-----~V 413 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPD------GVVKIWDLKSQT--NVA---KFPGHTGPVKAISFSENGYWLATAADDG-----SV 413 (506)
T ss_pred eEEeeEcCCceEEeccCCC------ceEEEEEcCCcc--ccc---cCCCCCCceeEEEeccCceEEEEEecCC-----eE
Confidence 3444444 55565555332 357788888776 333 2232111111222 24444444444322 27
Q ss_pred EEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEeccC
Q 008611 326 HILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQ 391 (559)
Q Consensus 326 ~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~~~ 391 (559)
.++|+...+ ..... ..+....-.+..+-..+..++.+|.+ -.||.|+-.+.+|..+..
T Consensus 414 ~lwDLRKl~--n~kt~-~l~~~~~v~s~~fD~SGt~L~~~g~~-----l~Vy~~~k~~k~W~~~~~ 471 (506)
T KOG0289|consen 414 KLWDLRKLK--NFKTI-QLDEKKEVNSLSFDQSGTYLGIAGSD-----LQVYICKKKTKSWTEIKE 471 (506)
T ss_pred EEEEehhhc--cccee-eccccccceeEEEcCCCCeEEeecce-----eEEEEEecccccceeeeh
Confidence 788886543 11111 01121111222232234566666532 346777778899999853
No 377
>KOG0981 consensus DNA topoisomerase I [Replication, recombination and repair]
Probab=43.59 E-value=43 Score=35.90 Aligned_cols=52 Identities=23% Similarity=0.173 Sum_probs=29.4
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHH------------HhhhHHHHHHHHHhhhhhHhhh
Q 008611 506 SKHPETTEHLIATLKAEKEELESSLSKEKL------------QSIQLKQDLTEAESQNTDLYKV 557 (559)
Q Consensus 506 ~~~~~~~~~~~~~l~~e~~~~~~~l~~~~~------------~~~~l~~~~~~~~~~~~~~~ke 557 (559)
..+++..++.|+++++++.+.+..|..... ..++++.+++.++.||+.++.+
T Consensus 635 ~~smekl~~kI~~~keql~e~~~~l~~ak~~~~~~~~~~~~k~~Ek~~k~~~~l~eqi~kl~~q 698 (759)
T KOG0981|consen 635 EKSMEKLAEKIKAKKEQLKEAEAELKSAKADEKKQEGSKEKKEVEKKEKKLERLEEQLKKLEIQ 698 (759)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHHHHHhhh
Confidence 344566666788888888777766544311 2344455555555555544443
No 378
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=43.01 E-value=51 Score=27.17 Aligned_cols=38 Identities=18% Similarity=0.287 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 521 AEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 521 ~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
+-...++.+++....++.+++.++++.+.++.++..+|
T Consensus 63 ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l 100 (105)
T cd00632 63 EARTELKERLETIELRIKRLERQEEDLQEKLKELQEKI 100 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555556666666666666666655554
No 379
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=42.84 E-value=74 Score=25.32 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008611 516 IATLKAEKEELESSLSKE 533 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~ 533 (559)
++.|++|.++++.+.+..
T Consensus 32 ~~kL~~en~qlk~Ek~~~ 49 (87)
T PF10883_consen 32 NAKLQKENEQLKTEKAVA 49 (87)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555544443333
No 380
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=42.75 E-value=69 Score=25.01 Aligned_cols=32 Identities=19% Similarity=0.240 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEA 547 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~ 547 (559)
+..+..+++.+++++++.+.+..+|+.++..+
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 26 TRQLNNELQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666776777777766666654
No 381
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=42.68 E-value=66 Score=28.34 Aligned_cols=42 Identities=21% Similarity=0.266 Sum_probs=26.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 008611 510 ETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQN 551 (559)
Q Consensus 510 ~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 551 (559)
+..+..+.+|.+.++++++.+++.-++..++.+++++..++.
T Consensus 97 e~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~ 138 (145)
T COG1730 97 EFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQ 138 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445666666666666666666666666666666665554
No 382
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=42.65 E-value=56 Score=27.78 Aligned_cols=34 Identities=29% Similarity=0.337 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 008611 518 TLKAEKEELESSLSKEKLQSIQLKQDLTEAESQN 551 (559)
Q Consensus 518 ~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 551 (559)
++..++++++++++..+++..++..++.+.+.-.
T Consensus 3 ~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~ 36 (129)
T cd00890 3 ELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAK 36 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555554443
No 383
>PHA01750 hypothetical protein
Probab=42.16 E-value=1e+02 Score=22.78 Aligned_cols=27 Identities=22% Similarity=0.204 Sum_probs=11.5
Q ss_pred HHHHHHHhhhHHHHHHHHHhhhhhHhh
Q 008611 530 LSKEKLQSIQLKQDLTEAESQNTDLYK 556 (559)
Q Consensus 530 l~~~~~~~~~l~~~~~~~~~~~~~~~k 556 (559)
|.....|++.++-+.++.+++..++.|
T Consensus 44 LdNL~~ei~~~kikqDnl~~qv~eik~ 70 (75)
T PHA01750 44 LDNLKTEIEELKIKQDELSRQVEEIKR 70 (75)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 333333333344444444555444444
No 384
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=42.10 E-value=83 Score=28.22 Aligned_cols=43 Identities=16% Similarity=0.197 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhh
Q 008611 514 HLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYK 556 (559)
Q Consensus 514 ~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~k 556 (559)
.....+++|+++++.++.+...++.+|+.+-..+..+|.+..+
T Consensus 27 ~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~ 69 (159)
T PF05384_consen 27 QEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSR 69 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3467777777777777777777777777777777777655544
No 385
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.03 E-value=47 Score=32.37 Aligned_cols=20 Identities=10% Similarity=0.268 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008611 516 IATLKAEKEELESSLSKEKL 535 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~ 535 (559)
+.+|+.++.+++.++++.+.
T Consensus 58 ~~~l~~Ql~~l~g~i~~L~~ 77 (262)
T COG1729 58 LTQLEQQLRQLQGKIEELRG 77 (262)
T ss_pred cHHHHHHHHHHHhhHHHHHh
Confidence 44444444444444444443
No 386
>PHA03385 IX capsid protein IX,hexon associated protein IX; Provisional
Probab=41.95 E-value=47 Score=27.90 Aligned_cols=31 Identities=29% Similarity=0.320 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 008611 513 EHLIATLKAEKEELESSLSKEKLQSIQLKQD 543 (559)
Q Consensus 513 ~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~ 543 (559)
++.+..+..+++.+.++|++.-+|+++|.++
T Consensus 99 ed~L~~llaqLealsqqL~~ls~qv~~L~~~ 129 (135)
T PHA03385 99 EDKLLVLLAQLEALSQQLQELSQQVAQLREQ 129 (135)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3456666667777777776666666665544
No 387
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.91 E-value=39 Score=33.80 Aligned_cols=36 Identities=25% Similarity=0.201 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQN 551 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 551 (559)
+++|++-.+++....++...+.+.|++++..+++.+
T Consensus 234 q~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~ni 269 (365)
T KOG2391|consen 234 QESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNI 269 (365)
T ss_pred HHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 444444444444444444444444555555544444
No 388
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=41.88 E-value=56 Score=30.03 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhh
Q 008611 526 LESSLSKEKLQSIQLKQDLTEAESQN 551 (559)
Q Consensus 526 ~~~~l~~~~~~~~~l~~~~~~~~~~~ 551 (559)
+..+|++....++.|..++..+....
T Consensus 86 LReQLEq~~~~N~~L~~dl~klt~~~ 111 (182)
T PF15035_consen 86 LREQLEQARKANEALQEDLQKLTQDW 111 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555554444444
No 389
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=41.88 E-value=99 Score=24.44 Aligned_cols=34 Identities=15% Similarity=0.278 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAES 549 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~ 549 (559)
+..++.++++++..+.+.-..+.+..+.+++++.
T Consensus 5 l~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~ 38 (89)
T PF00957_consen 5 LEQIQEQVEEVKNIMRENIDKLLERGEKLEELED 38 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence 4444444444444444443333333333333333
No 390
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=41.79 E-value=40 Score=37.59 Aligned_cols=53 Identities=11% Similarity=0.150 Sum_probs=37.4
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 506 SKHPETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 506 ~~~~~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
+.|+...|...+++.-|++.+|..++..|.++.+-+-++++...++.+++++|
T Consensus 105 ~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eL 157 (1265)
T KOG0976|consen 105 ESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDEL 157 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44566677777777777777777777777777777777777777776666665
No 391
>PRK14011 prefoldin subunit alpha; Provisional
Probab=41.58 E-value=84 Score=27.66 Aligned_cols=38 Identities=13% Similarity=0.245 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Q 008611 513 EHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQ 550 (559)
Q Consensus 513 ~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~ 550 (559)
+..+..|.+.+.++...+++.+.+..+++.+++..-++
T Consensus 94 ~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~k~~~ 131 (144)
T PRK14011 94 KKSVEELDKTKKEGNKKIEELNKEITKLRKELEKRAQA 131 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555556666666666655555554444333
No 392
>PRK11020 hypothetical protein; Provisional
Probab=41.28 E-value=1.1e+02 Score=25.38 Aligned_cols=18 Identities=17% Similarity=0.298 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008611 516 IATLKAEKEELESSLSKE 533 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~ 533 (559)
|+.|...+...++++...
T Consensus 7 iq~L~drLD~~~~Klaaa 24 (118)
T PRK11020 7 IKRLSDRLDAIRHKLAAA 24 (118)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444433
No 393
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=41.02 E-value=57 Score=37.06 Aligned_cols=48 Identities=33% Similarity=0.369 Sum_probs=35.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 511 TTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 511 ~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
+.+..+..++.++..++..+...+.+++.++.++.+.++.+.+|+.||
T Consensus 593 el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL 640 (769)
T PF05911_consen 593 ELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSEL 640 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456677777777777777777777777778888877777777765
No 394
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=40.95 E-value=77 Score=26.41 Aligned_cols=41 Identities=20% Similarity=0.221 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhh
Q 008611 513 EHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTD 553 (559)
Q Consensus 513 ~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~ 553 (559)
+..+++|+..+++-+.-+++.+++.++++++.++..+.+..
T Consensus 45 ~~~~~~L~~~~~~~r~~~~~~~~~~qq~r~~~e~~~e~ik~ 85 (110)
T PF10828_consen 45 EDANQELKAQLQQNRQAVEEQQKREQQLRQQSEERRESIKT 85 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455565555555555555566566666666666555543
No 395
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=40.65 E-value=44 Score=34.73 Aligned_cols=15 Identities=27% Similarity=0.490 Sum_probs=7.5
Q ss_pred ceEEEECCCC-eeEec
Q 008611 375 DLHVLDLQTM-EWSRP 389 (559)
Q Consensus 375 dv~~~d~~~~-~W~~~ 389 (559)
..|.+++.|. .|...
T Consensus 268 H~yalel~tqrVWDYA 283 (493)
T KOG0804|consen 268 HCYALELETQRVWDYA 283 (493)
T ss_pred ceEEEeecceeeeecc
Confidence 3555555543 46543
No 396
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=40.56 E-value=56 Score=36.69 Aligned_cols=9 Identities=22% Similarity=0.844 Sum_probs=3.8
Q ss_pred EEEEcCcCC
Q 008611 309 LVIFGGEDA 317 (559)
Q Consensus 309 lyv~GG~~~ 317 (559)
+.+++|.++
T Consensus 30 ~~~i~G~Ng 38 (650)
T TIGR03185 30 IILIGGLNG 38 (650)
T ss_pred EEEEECCCC
Confidence 444444433
No 397
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=40.43 E-value=64 Score=27.58 Aligned_cols=34 Identities=18% Similarity=0.281 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 008611 518 TLKAEKEELESSLSKEKLQSIQLKQDLTEAESQN 551 (559)
Q Consensus 518 ~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 551 (559)
.|...+++++.+++..+++...++.++.+.+.-+
T Consensus 3 ~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~ 36 (129)
T cd00584 3 QLAAQLQVLQQEIEELQQELARLNEAIAEYEQAK 36 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555444
No 398
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=40.13 E-value=86 Score=26.78 Aligned_cols=40 Identities=25% Similarity=0.330 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhH
Q 008611 515 LIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDL 554 (559)
Q Consensus 515 ~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 554 (559)
.+.-+++.++.++..++..+.++.+++.++...+..++++
T Consensus 88 A~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~ 127 (129)
T cd00584 88 AIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQEL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555556666666666666666666666666655543
No 399
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=40.01 E-value=54 Score=30.38 Aligned_cols=46 Identities=13% Similarity=0.137 Sum_probs=21.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHh
Q 008611 510 ETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLY 555 (559)
Q Consensus 510 ~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 555 (559)
.+.+..+.+|+++.+.+....+....++.+++.+...+++.+...+
T Consensus 134 ~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e 179 (190)
T PF05266_consen 134 KELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAE 179 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444445555555555555555544433
No 400
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=40.01 E-value=69 Score=31.93 Aligned_cols=28 Identities=25% Similarity=0.261 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008611 512 TEHLIATLKAEKEELESSLSKEKLQSIQ 539 (559)
Q Consensus 512 ~~~~~~~l~~e~~~~~~~l~~~~~~~~~ 539 (559)
.|..+..+++|.+.+|-+|++.++++-+
T Consensus 132 LE~li~~~~EEn~~lqlqL~~l~~e~~E 159 (401)
T PF06785_consen 132 LEGLIRHLREENQCLQLQLDALQQECGE 159 (401)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhH
Confidence 3334555555555555555555444433
No 401
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=39.95 E-value=79 Score=29.92 Aligned_cols=40 Identities=33% Similarity=0.429 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhh
Q 008611 517 ATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYK 556 (559)
Q Consensus 517 ~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~k 556 (559)
..+..+.+.++.+++....++.+|+.++.+++.++.++..
T Consensus 94 ~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~ 133 (221)
T PF04012_consen 94 ADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKS 133 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555555555544443
No 402
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=39.92 E-value=41 Score=26.28 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLKQ 542 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~~ 542 (559)
+.++.+.+++++.+|...++++-.+|.
T Consensus 4 L~~l~~~k~~Le~~L~~lE~qIy~~Et 30 (80)
T PF09340_consen 4 LKELLQKKKKLEKDLAALEKQIYDKET 30 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555443
No 403
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=39.80 E-value=45 Score=29.82 Aligned_cols=22 Identities=9% Similarity=0.120 Sum_probs=12.4
Q ss_pred HHHHHHhhhHHHHHHHHHhhhh
Q 008611 531 SKEKLQSIQLKQDLTEAESQNT 552 (559)
Q Consensus 531 ~~~~~~~~~l~~~~~~~~~~~~ 552 (559)
+++|+++++|+.++...+.+|.
T Consensus 119 eemQe~i~~L~kev~~~~erl~ 140 (201)
T KOG4603|consen 119 EEMQEEIQELKKEVAGYRERLK 140 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555556666666555553
No 404
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=39.55 E-value=84 Score=24.23 Aligned_cols=7 Identities=14% Similarity=0.098 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 008611 530 LSKEKLQ 536 (559)
Q Consensus 530 l~~~~~~ 536 (559)
+...+++
T Consensus 52 ~~~L~~e 58 (75)
T PF07989_consen 52 VESLKRE 58 (75)
T ss_pred HHHHHHH
Confidence 3333333
No 405
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=39.33 E-value=5e+02 Score=27.62 Aligned_cols=64 Identities=20% Similarity=0.240 Sum_probs=39.0
Q ss_pred CCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCcCceEEEECCC
Q 008611 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLET 332 (559)
Q Consensus 255 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t 332 (559)
.+.+++.|+.+.. |.++|+.+.+-...- ..-....+++.. ++.+++.+..+ +.+.+||+.+
T Consensus 257 ~g~~i~Sgs~D~t------vriWd~~~~~~~~~l-----~~hs~~is~~~f~~d~~~l~s~s~d------~~i~vwd~~~ 319 (456)
T KOG0266|consen 257 DGNLLVSGSDDGT------VRIWDVRTGECVRKL-----KGHSDGISGLAFSPDGNLLVSASYD------GTIRVWDLET 319 (456)
T ss_pred CCCEEEEecCCCc------EEEEeccCCeEEEee-----eccCCceEEEEECCCCCEEEEcCCC------ccEEEEECCC
Confidence 5688888887654 888888886544332 111222233333 55777777543 3478899887
Q ss_pred Cce
Q 008611 333 MTW 335 (559)
Q Consensus 333 ~~W 335 (559)
..-
T Consensus 320 ~~~ 322 (456)
T KOG0266|consen 320 GSK 322 (456)
T ss_pred Cce
Confidence 764
No 406
>PRK14011 prefoldin subunit alpha; Provisional
Probab=39.29 E-value=1.1e+02 Score=26.96 Aligned_cols=32 Identities=19% Similarity=0.307 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 008611 517 ATLKAEKEELESSLSKEKLQSIQLKQDLTEAE 548 (559)
Q Consensus 517 ~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~ 548 (559)
.-+++.++.++......+..++++..++++++
T Consensus 91 ~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~ 122 (144)
T PRK14011 91 EDFKKSVEELDKTKKEGNKKIEELNKEITKLR 122 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444444444444333
No 407
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=39.27 E-value=36 Score=35.98 Aligned_cols=26 Identities=15% Similarity=0.199 Sum_probs=13.9
Q ss_pred HHHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 533 EKLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 533 ~~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
..++..+|++++.++++++.+++.+|
T Consensus 71 l~~~~~~l~~~~~~~~~~~~~~~~~~ 96 (425)
T PRK05431 71 LIAEVKELKEEIKALEAELDELEAEL 96 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455556666666665555544
No 408
>PRK01203 prefoldin subunit alpha; Provisional
Probab=39.25 E-value=1e+02 Score=26.57 Aligned_cols=42 Identities=26% Similarity=0.251 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhh
Q 008611 513 EHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYK 556 (559)
Q Consensus 513 ~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~k 556 (559)
++.+..|++++++++.-+++.+++.++++.++.++- +.++++
T Consensus 86 e~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l~--~~~~~~ 127 (130)
T PRK01203 86 ERTIERLKENLEDLKDSIQKLNDQRKTLVDQYNTVY--ITEATR 127 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhc
Confidence 346888888888888888888888888888887776 555443
No 409
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=39.21 E-value=74 Score=28.59 Aligned_cols=43 Identities=5% Similarity=0.023 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHhhhhhHhhhh
Q 008611 516 IATLKAEKEELESSLSKEKLQ--SIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~--~~~l~~~~~~~~~~~~~~~kel 558 (559)
.+.|++|++.++..+++...+ +.+-+++....+.++.+|++.|
T Consensus 36 ~~~L~~El~~L~~~i~~Ar~~GDlsEak~~~~~~e~rI~~L~~~L 80 (160)
T PRK06342 36 LKALEDQLAQARAAYEAAQAIEDVNERRRQMARPLRDLRYLAARR 80 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 455666666665555444322 2222334444455555555544
No 410
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=39.04 E-value=1.6e+02 Score=23.10 Aligned_cols=35 Identities=29% Similarity=0.254 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 008611 517 ATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQN 551 (559)
Q Consensus 517 ~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 551 (559)
++|.++...+|..|+..-..+...+.+.+.++.+.
T Consensus 19 ~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN 53 (80)
T PF10224_consen 19 EELIQEILELQDSLEALSDRVEEVKEENEKLESEN 53 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444433
No 411
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=38.80 E-value=92 Score=27.93 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 008611 516 IATLKAEKEELESSLSKEKLQSI 538 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~ 538 (559)
|+.|+..++.+++...-...++.
T Consensus 88 i~~l~ek~q~l~~t~s~veaEik 110 (201)
T KOG4603|consen 88 IVALTEKVQSLQQTCSYVEAEIK 110 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444333333333
No 412
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=38.67 E-value=57 Score=35.56 Aligned_cols=41 Identities=12% Similarity=0.072 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 518 TLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 518 ~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
++.+-...+.+++.+...+..+++++++++++++++++++|
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l 168 (525)
T TIGR02231 128 EWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNEL 168 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444444444443
No 413
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=38.56 E-value=88 Score=28.29 Aligned_cols=46 Identities=20% Similarity=0.181 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhh
Q 008611 512 TEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKV 557 (559)
Q Consensus 512 ~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ke 557 (559)
.+..+..+.....++=..+.+.+++...++.++..+++++..|++.
T Consensus 84 lE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K 129 (189)
T TIGR02132 84 LEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKK 129 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHH
Confidence 3444555555555555556666666777777787777777666653
No 414
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=38.54 E-value=62 Score=35.71 Aligned_cols=29 Identities=24% Similarity=0.221 Sum_probs=14.7
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCccccCc
Q 008611 82 LGNMATTEAMRLFVKILEEEDPGWYSRAS 110 (559)
Q Consensus 82 ~~~~s~~~a~~~yv~~~~~~~~~~~~~~~ 110 (559)
++.++.+---..=+..|..++|+-....+
T Consensus 26 l~~ft~e~~v~~~~~cL~~I~p~~~~~l~ 54 (594)
T PF05667_consen 26 LKQFTTELLVEAVVRCLRVIDPSLGSSLP 54 (594)
T ss_pred HhhCCHHHHHHHHHHHHHHhCccccCCCc
Confidence 44455444444445556666665544333
No 415
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=38.49 E-value=65 Score=36.92 Aligned_cols=24 Identities=21% Similarity=-0.054 Sum_probs=12.4
Q ss_pred CCCCCCChhhhhhHHHHhcCCC-CCHHH
Q 008611 63 PKPSSWSPVEQSKWKSWQGLGN-MATTE 89 (559)
Q Consensus 63 ~~p~~~~~~~~~k~~aw~~~~~-~s~~~ 89 (559)
+-.++.|+..-.+.-+ .++ ++..|
T Consensus 61 ~l~~~~di~~~l~r~~---~g~~l~~~e 85 (771)
T TIGR01069 61 RFFGFEDIRELLKRAE---LGGIVKGLE 85 (771)
T ss_pred CcCCCccHHHHHHHHh---cCCcCChHH
Confidence 3345667665444332 344 66655
No 416
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=38.44 E-value=1.2e+02 Score=23.65 Aligned_cols=31 Identities=26% Similarity=0.373 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Q 008611 520 KAEKEELESSLSKEKLQSIQLKQDLTEAESQ 550 (559)
Q Consensus 520 ~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~ 550 (559)
+.+..+++.++....++.+.+++.+-++|..
T Consensus 24 k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~ 54 (79)
T PF08581_consen 24 KHQKDEYEHKINSQIQEMQQIRQKVYELEQA 54 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555555555555443
No 417
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=38.33 E-value=76 Score=24.41 Aligned_cols=29 Identities=14% Similarity=0.233 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 008611 518 TLKAEKEELESSLSKEKLQSIQLKQDLTE 546 (559)
Q Consensus 518 ~l~~e~~~~~~~l~~~~~~~~~l~~~~~~ 546 (559)
+|+..+...+..+......+..|+.++..
T Consensus 9 ~L~~kL~~K~eEI~rLn~lv~sLR~KLiK 37 (76)
T PF11544_consen 9 ELKKKLNDKQEEIDRLNILVGSLRGKLIK 37 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433
No 418
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=38.30 E-value=36 Score=36.28 Aligned_cols=10 Identities=30% Similarity=0.365 Sum_probs=5.3
Q ss_pred CCEEEEEcCC
Q 008611 358 ERYLLIFGGG 367 (559)
Q Consensus 358 ~~~l~v~GG~ 367 (559)
++.|.|.||.
T Consensus 232 ~g~I~i~~Gi 241 (451)
T PF03961_consen 232 GGNITIHGGI 241 (451)
T ss_pred CCcEEEeCCe
Confidence 4446666653
No 419
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=38.22 E-value=67 Score=26.59 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAES 549 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~ 549 (559)
...++++++.++..+++.+.++.+|.+++.+.++
T Consensus 75 ~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 75 APYKKKEREQLNARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5556677777777788888887777777776654
No 420
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=38.05 E-value=1.4e+02 Score=24.53 Aligned_cols=38 Identities=13% Similarity=0.135 Sum_probs=16.9
Q ss_pred CcchHHHHH--HHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 008611 509 PETTEHLIA--TLKAEKEELESSLSKEKLQSIQLKQDLTE 546 (559)
Q Consensus 509 ~~~~~~~~~--~l~~e~~~~~~~l~~~~~~~~~l~~~~~~ 546 (559)
+...|..+. ..-++..++.+.....-+++.+|+.++..
T Consensus 39 L~kiE~~~~~l~qgeqI~kL~e~V~~QGEqIkel~~e~k~ 78 (102)
T PF01519_consen 39 LTKIENKLDQLAQGEQINKLTEKVDKQGEQIKELQVEQKA 78 (102)
T ss_dssp -BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555 33344444444444444444444444443
No 421
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=37.72 E-value=84 Score=29.74 Aligned_cols=47 Identities=19% Similarity=0.254 Sum_probs=34.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhh
Q 008611 511 TTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKV 557 (559)
Q Consensus 511 ~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ke 557 (559)
-.++.|.++...+.+++..+........+++.++++.+..+++++++
T Consensus 27 ~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~ 73 (221)
T PF04012_consen 27 MLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQ 73 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777777777777777777777777777777777766654
No 422
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=37.58 E-value=69 Score=36.79 Aligned_cols=24 Identities=17% Similarity=0.111 Sum_probs=12.0
Q ss_pred CCCCCCChhhhhhHHHHhcCCC-CCHHH
Q 008611 63 PKPSSWSPVEQSKWKSWQGLGN-MATTE 89 (559)
Q Consensus 63 ~~p~~~~~~~~~k~~aw~~~~~-~s~~~ 89 (559)
+-.++.|+..-.+.-+ .++ ++.+|
T Consensus 64 ~l~~~~Di~~~l~r~~---~g~~l~~~e 88 (782)
T PRK00409 64 PFEGVKDIDDALKRAE---KGGVLSGDE 88 (782)
T ss_pred CCCCCccHHHHHHHHh---CCCCCCHHH
Confidence 3345667655544333 233 56655
No 423
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=37.32 E-value=86 Score=24.44 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 008611 516 IATLKAEKEELESSLSKEKLQSI 538 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~ 538 (559)
++.+++++++++.+..+.+.+..
T Consensus 33 ~~~~~~~~~~l~~en~~L~~ei~ 55 (85)
T TIGR02209 33 LQKLQLEIDKLQKEWRDLQLEVA 55 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444433333333333
No 424
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=37.12 E-value=7e+02 Score=28.69 Aligned_cols=33 Identities=15% Similarity=0.109 Sum_probs=22.6
Q ss_pred ceeEEeCCEEEEEeccCCCCCCcceEEEEECCCCe--EEEec
Q 008611 249 HSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCS--WSTLK 288 (559)
Q Consensus 249 ~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~ 288 (559)
.+-+.+++.||+... .+.++.+|..|++ |+.-.
T Consensus 188 ~TPlvvgg~lYv~t~-------~~~V~ALDa~TGk~lW~~d~ 222 (764)
T TIGR03074 188 ATPLKVGDTLYLCTP-------HNKVIALDAATGKEKWKFDP 222 (764)
T ss_pred cCCEEECCEEEEECC-------CCeEEEEECCCCcEEEEEcC
Confidence 344567999999744 2468888888764 77543
No 425
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=37.07 E-value=88 Score=19.53 Aligned_cols=18 Identities=33% Similarity=0.346 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008611 519 LKAEKEELESSLSKEKLQ 536 (559)
Q Consensus 519 l~~e~~~~~~~l~~~~~~ 536 (559)
|..++++++...++.+..
T Consensus 6 L~sekeqLrrr~eqLK~k 23 (32)
T PF02344_consen 6 LISEKEQLRRRREQLKHK 23 (32)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444443333333
No 426
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=37.00 E-value=94 Score=30.16 Aligned_cols=43 Identities=19% Similarity=0.226 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
-..|.+..+.+...|+..+.++.-|+-++.-...+++.|++||
T Consensus 76 c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqel 118 (307)
T PF10481_consen 76 CENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQEL 118 (307)
T ss_pred HHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555555555555555555443
No 427
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=36.67 E-value=74 Score=30.47 Aligned_cols=36 Identities=14% Similarity=0.279 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Q 008611 515 LIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQ 550 (559)
Q Consensus 515 ~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~ 550 (559)
+|.+++.+++..+........++..|+.+++++...
T Consensus 68 iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 68 IIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444455555555555555444
No 428
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=36.67 E-value=1.1e+02 Score=28.39 Aligned_cols=28 Identities=39% Similarity=0.430 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 008611 514 HLIATLKAEKEELESSLSKEKLQSIQLK 541 (559)
Q Consensus 514 ~~~~~l~~e~~~~~~~l~~~~~~~~~l~ 541 (559)
..+..|+.++++++.++...+...+.++
T Consensus 127 ~~i~~L~~e~~~L~~~~~~l~~~~e~~e 154 (189)
T PF10211_consen 127 EEIEELEEEKEELEKQVQELKNKCEQLE 154 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444454444444444444444433
No 429
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=36.66 E-value=1.5e+02 Score=24.35 Aligned_cols=43 Identities=16% Similarity=0.250 Sum_probs=28.1
Q ss_pred cCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 008611 505 ISKHPETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEA 547 (559)
Q Consensus 505 ~~~~~~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~ 547 (559)
+..++..+++.+..++.|...+.-..++....++.|+.+++..
T Consensus 31 L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~ 73 (102)
T PF10205_consen 31 LKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEES 73 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555666666666666777766666666666666666666643
No 430
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=36.39 E-value=78 Score=24.88 Aligned_cols=31 Identities=6% Similarity=0.202 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhhhhHhh
Q 008611 526 LESSLSKEKLQSIQLKQDLTEAESQNTDLYK 556 (559)
Q Consensus 526 ~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~k 556 (559)
+....++.+.+++.|+++++.+...|+++..
T Consensus 50 i~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~ 80 (83)
T PF07544_consen 50 IDRSVEEQEEEIEELEEQIRKKREVLQKFKE 80 (83)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666677777666666665544
No 431
>PLN02678 seryl-tRNA synthetase
Probab=36.14 E-value=44 Score=35.50 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=14.9
Q ss_pred HHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 534 KLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 534 ~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
.++..+|++++.+++.++.+++.+|
T Consensus 77 ~~~~~~Lk~ei~~le~~~~~~~~~l 101 (448)
T PLN02678 77 IAETKELKKEITEKEAEVQEAKAAL 101 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666666666666554
No 432
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=36.12 E-value=76 Score=28.04 Aligned_cols=18 Identities=33% Similarity=0.457 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008611 516 IATLKAEKEELESSLSKE 533 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~ 533 (559)
|.+++.++..++...++.
T Consensus 12 i~~l~~~~~~i~~~~~~~ 29 (149)
T PF07352_consen 12 IAELQREIARIEAEANDE 29 (149)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555555544433
No 433
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=36.07 E-value=1e+02 Score=25.85 Aligned_cols=38 Identities=29% Similarity=0.299 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q 008611 512 TEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAES 549 (559)
Q Consensus 512 ~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~ 549 (559)
.+..+..+++.++.++.+++..+.++..++..++++.+
T Consensus 82 l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~ 119 (120)
T PF02996_consen 82 LKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQLYQ 119 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44557778888888888888888888888887777654
No 434
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=36.05 E-value=1.1e+02 Score=23.64 Aligned_cols=19 Identities=26% Similarity=0.263 Sum_probs=7.7
Q ss_pred hhHHHHHHHHHhhhhhHhh
Q 008611 538 IQLKQDLTEAESQNTDLYK 556 (559)
Q Consensus 538 ~~l~~~~~~~~~~~~~~~k 556 (559)
..|+.++++.++.+.++++
T Consensus 53 ~~L~~el~~~~~~l~~a~~ 71 (75)
T PF07989_consen 53 ESLKRELQEKKKLLKEAEK 71 (75)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 435
>PF14818 DUF4482: Domain of unknown function (DUF4482)
Probab=35.95 E-value=60 Score=28.33 Aligned_cols=42 Identities=14% Similarity=0.241 Sum_probs=35.0
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q 008611 508 HPETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAES 549 (559)
Q Consensus 508 ~~~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~ 549 (559)
.-.|+-+++..+..|.++-+.+..++|..+++|.+++.-...
T Consensus 14 W~rEk~ELLdrfd~ER~eWE~Q~kemq~kieql~~e~~~~r~ 55 (141)
T PF14818_consen 14 WSREKMELLDRFDRERQEWEQQWKEMQRKIEQLQKEVKPRRK 55 (141)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhc
Confidence 345677789999999999999999999999999988876643
No 436
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=35.86 E-value=79 Score=25.15 Aligned_cols=33 Identities=24% Similarity=0.145 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 008611 519 LKAEKEELESSLSKEKLQSIQLKQDLTEAESQN 551 (559)
Q Consensus 519 l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 551 (559)
+.-...+++++.+..++++++|+.|.+.++++.
T Consensus 21 ~~~k~~ka~~~~~kL~~en~qlk~Ek~~~~~qv 53 (87)
T PF10883_consen 21 LWWKVKKAKKQNAKLQKENEQLKTEKAVAETQV 53 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555556666666666666666665554
No 437
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=35.84 E-value=52 Score=35.40 Aligned_cols=21 Identities=33% Similarity=0.408 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008611 516 IATLKAEKEELESSLSKEKLQ 536 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~ 536 (559)
+..++.|++.++.+++..+++
T Consensus 296 l~~l~~Eie~kEeE~e~lq~~ 316 (581)
T KOG0995|consen 296 LEMLKSEIEEKEEEIEKLQKE 316 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333433333333333333
No 438
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=35.83 E-value=6.4e+02 Score=28.34 Aligned_cols=105 Identities=18% Similarity=0.211 Sum_probs=52.5
Q ss_pred CCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEEEECCCC
Q 008611 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETM 333 (559)
Q Consensus 255 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~ 333 (559)
-|.-|++.|... ..+...|..++.-..+= +| ..+.-.+++.. .++....|+.+ +.|.+||+.+.
T Consensus 545 PNs~Y~aTGSsD-----~tVRlWDv~~G~~VRiF-~G---H~~~V~al~~Sp~Gr~LaSg~ed------~~I~iWDl~~~ 609 (707)
T KOG0263|consen 545 PNSNYVATGSSD-----RTVRLWDVSTGNSVRIF-TG---HKGPVTALAFSPCGRYLASGDED------GLIKIWDLANG 609 (707)
T ss_pred CcccccccCCCC-----ceEEEEEcCCCcEEEEe-cC---CCCceEEEEEcCCCceEeecccC------CcEEEEEcCCC
Confidence 578888888432 35667777776654442 11 11111222222 44555555543 23778888764
Q ss_pred ceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCC
Q 008611 334 TWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQT 383 (559)
Q Consensus 334 ~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~ 383 (559)
.=...- .+ ..-...++..-.++.+++.||.+ +.|-.+|+..
T Consensus 610 ~~v~~l-~~---Ht~ti~SlsFS~dg~vLasgg~D-----nsV~lWD~~~ 650 (707)
T KOG0263|consen 610 SLVKQL-KG---HTGTIYSLSFSRDGNVLASGGAD-----NSVRLWDLTK 650 (707)
T ss_pred cchhhh-hc---ccCceeEEEEecCCCEEEecCCC-----CeEEEEEchh
Confidence 321110 01 11112233333466699999875 4455566543
No 439
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=35.77 E-value=1.1e+02 Score=25.94 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=9.4
Q ss_pred HhhhHHHHHHHHHhhhhhHhh
Q 008611 536 QSIQLKQDLTEAESQNTDLYK 556 (559)
Q Consensus 536 ~~~~l~~~~~~~~~~~~~~~k 556 (559)
++..|+.+++....++++|.+
T Consensus 96 ~i~~les~~e~I~~~m~~LK~ 116 (131)
T KOG1760|consen 96 EIEELESELESISARMDELKK 116 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443
No 440
>PRK10698 phage shock protein PspA; Provisional
Probab=35.72 E-value=90 Score=29.72 Aligned_cols=38 Identities=29% Similarity=0.411 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 008611 514 HLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQN 551 (559)
Q Consensus 514 ~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 551 (559)
..+..|+.+++..+..+.+.+.++.+|+.++.+++.+-
T Consensus 99 ~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~ 136 (222)
T PRK10698 99 DLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQ 136 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666666666655544
No 441
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=35.61 E-value=83 Score=26.74 Aligned_cols=33 Identities=24% Similarity=0.229 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 008611 519 LKAEKEELESSLSKEKLQSIQLKQDLTEAESQN 551 (559)
Q Consensus 519 l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 551 (559)
+..++++++++++..+.+..+|...+.+.+.-+
T Consensus 4 l~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~ 36 (126)
T TIGR00293 4 LAAELQILQQQVESLQAQIAALRALIAELETAI 36 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555554444444433
No 442
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=35.53 E-value=93 Score=29.82 Aligned_cols=47 Identities=21% Similarity=0.185 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-------hhhHHHHHHHHHhhhhhHhhhh
Q 008611 512 TEHLIATLKAEKEELESSLSKEKLQ-------SIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 512 ~~~~~~~l~~e~~~~~~~l~~~~~~-------~~~l~~~~~~~~~~~~~~~kel 558 (559)
..+.|+.|+.+-+.+.++++..++. +...++++++...++++|..++
T Consensus 106 l~d~i~nLk~se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq 159 (330)
T KOG2991|consen 106 LSDDITNLKESEEKLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQQ 159 (330)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445666666666666666665554 3444555555555555555544
No 443
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=35.36 E-value=59 Score=34.39 Aligned_cols=44 Identities=14% Similarity=0.146 Sum_probs=33.4
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhh
Q 008611 509 PETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNT 552 (559)
Q Consensus 509 ~~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~ 552 (559)
+++....+..++++++++..++...++++.+|..+|.++++.+.
T Consensus 207 lrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k 250 (596)
T KOG4360|consen 207 LRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIK 250 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 44455557778888888888888888888888888888777663
No 444
>PRK04863 mukB cell division protein MukB; Provisional
Probab=35.33 E-value=41 Score=41.41 Aligned_cols=51 Identities=12% Similarity=0.111 Sum_probs=30.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhhC
Q 008611 509 PETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVIA 559 (559)
Q Consensus 509 ~~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kelq 559 (559)
++..+...+.+++++++.+.++++.++....++..++++++++++++++|+
T Consensus 994 Le~iE~~~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~~ 1044 (1486)
T PRK04863 994 LEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQ 1044 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555556666666666777766666653
No 445
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.26 E-value=4.2e+02 Score=25.63 Aligned_cols=185 Identities=14% Similarity=0.099 Sum_probs=0.0
Q ss_pred EeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCCceEEecC
Q 008611 261 IAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDA 340 (559)
Q Consensus 261 ~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~ 340 (559)
||+.-.+..+...+.+..-.+++|++.......-......+-+-.+--+.++.+..+... .+..|+-+ +.|..-..
T Consensus 69 ~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~v---svl~~~~~-g~w~t~ki 144 (299)
T KOG1332|consen 69 FGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKV---SVLTYDSS-GGWTTSKI 144 (299)
T ss_pred cCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcE---EEEEEcCC-CCccchhh
Q ss_pred CCCCCCcccccEEEEEcCC------------EEEEEcCCCCCCCcCceEEEECCCCeeEe-------------ccCCCCC
Q 008611 341 VGVPPSPRSDHAAAVHAER------------YLLIFGGGSHAACFNDLHVLDLQTMEWSR-------------PTQQGEI 395 (559)
Q Consensus 341 ~~~~p~~r~~~~~~~~~~~------------~l~v~GG~~~~~~~~dv~~~d~~~~~W~~-------------~~~~~~~ 395 (559)
...-+.+....+.+.-.-. +=++-||.+ +.+-+++.+..+|.. +.-.|..
T Consensus 145 ~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcD-----n~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~ 219 (299)
T KOG1332|consen 145 VFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCD-----NLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSV 219 (299)
T ss_pred hhccccccceeeecCcCCCccccccCcccccceeeccCCc-----cceeeeecCCcchhhhhhhhhcchhhhhhhhcccc
Q ss_pred CCCccccEEEEECCceec--------------------ceeeeeeccCCCcEEEEEcCcCCCCcccEEEEeCCCc-ceec
Q 008611 396 PTPRAGHAGVTIGENWFL--------------------GLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSHK-STLS 454 (559)
Q Consensus 396 p~~R~~hs~~~~~~~~~i--------------------G~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~~d~~~~-~~~~ 454 (559)
..+++..+.+.-+++++| -+-.+.-+..| .++.++| ..|.|.++.++.+ .|..
T Consensus 220 gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sG--n~LaVs~----GdNkvtlwke~~~Gkw~~ 293 (299)
T KOG1332|consen 220 GLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSG--NILAVSG----GDNKVTLWKENVDGKWEE 293 (299)
T ss_pred CCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccc--cEEEEec----CCcEEEEEEeCCCCcEEE
Q ss_pred ccCCCC
Q 008611 455 SKMIET 460 (559)
Q Consensus 455 ~~~~~~ 460 (559)
......
T Consensus 294 v~~~~~ 299 (299)
T KOG1332|consen 294 VGEVSV 299 (299)
T ss_pred ccccCC
No 446
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=35.20 E-value=62 Score=25.22 Aligned_cols=31 Identities=13% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhhhhhHhhh
Q 008611 527 ESSLSKEKLQSIQLKQDLTEAESQNTDLYKV 557 (559)
Q Consensus 527 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ke 557 (559)
.+..+..+..+.+++++++++|.++++||++
T Consensus 49 REEFd~q~~~L~~~r~kl~~LEarl~~LE~~ 79 (79)
T PF04380_consen 49 REEFDAQKAVLARTREKLEALEARLAALEAQ 79 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 447
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=35.11 E-value=88 Score=26.59 Aligned_cols=37 Identities=27% Similarity=0.275 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 008611 515 LIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQN 551 (559)
Q Consensus 515 ~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 551 (559)
-+.-+++.+..++.+++..++.+.++++++.+.+..+
T Consensus 87 A~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l 123 (126)
T TIGR00293 87 AIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEA 123 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555544443
No 448
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=34.99 E-value=99 Score=24.50 Aligned_cols=41 Identities=15% Similarity=0.213 Sum_probs=19.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 008611 511 TTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQN 551 (559)
Q Consensus 511 ~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 551 (559)
+.+..+..++++...+..+..+.-.+..++..+++++.+.+
T Consensus 30 ~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v 70 (90)
T PF06103_consen 30 EVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKV 70 (90)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33444555555555555554444444444444444444433
No 449
>PF09032 Siah-Interact_N: Siah interacting protein, N terminal ; InterPro: IPR015120 The N-terminal domain of Siah interacting protein (SIP) adopts a helical hairpin structure with a hydrophobic core stabilised by a classic knobs-and-holes arrangement of side chains contributed by the two amphipathic helices. Little is known about this domain's function, except that it is crucial for interactions with Siah. It has also been hypothesised that SIP can dimerise through this N-terminal domain []. ; PDB: 1YSM_A 2A26_C 2A25_B 1X5M_A.
Probab=34.91 E-value=80 Score=24.63 Aligned_cols=41 Identities=27% Similarity=0.374 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHhhhhhHh
Q 008611 515 LIATLKAEKEELESSLSKEKLQSI--QLKQDLTEAESQNTDLY 555 (559)
Q Consensus 515 ~~~~l~~e~~~~~~~l~~~~~~~~--~l~~~~~~~~~~~~~~~ 555 (559)
.+.+|+..+++++.-++...++.- -|..++..+|.++..++
T Consensus 4 ~i~eL~~Dl~El~~Ll~~a~R~rVk~~L~~ei~klE~eI~~~~ 46 (79)
T PF09032_consen 4 QIEELQLDLEELKSLLEQAKRKRVKDLLTNEIRKLETEIKKLK 46 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777777766655544321 24555555555554444
No 450
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=34.83 E-value=4.7e+02 Score=26.01 Aligned_cols=137 Identities=19% Similarity=0.193 Sum_probs=0.0
Q ss_pred eEEeCCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEEC
Q 008611 251 LIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDL 330 (559)
Q Consensus 251 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~ 330 (559)
.+..+|+|+|+-.+ .+++=..+ ++|..-.-.++..-.+..+..|| .-|.+-+|++
T Consensus 72 SaSqDGklIvWDs~---------------TtnK~hai----pl~s~WVMtCA~sPSg~~VAcGG------LdN~Csiy~l 126 (343)
T KOG0286|consen 72 SASQDGKLIVWDSF---------------TTNKVHAI----PLPSSWVMTCAYSPSGNFVACGG------LDNKCSIYPL 126 (343)
T ss_pred eeccCCeEEEEEcc---------------cccceeEE----ecCceeEEEEEECCCCCeEEecC------cCceeEEEec
Q ss_pred C-CCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEeccCCCCCCCCccccEEEEECC
Q 008611 331 E-TMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGE 409 (559)
Q Consensus 331 ~-t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~~~~~~~p~~R~~hs~~~~~~ 409 (559)
. .+.=-.+......+.-..+-+++.+.++.-+|.|-.+ ..+-.+|+++ +.....-.+|++=++
T Consensus 127 s~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD-----~TCalWDie~---------g~~~~~f~GH~gDV~-- 190 (343)
T KOG0286|consen 127 STRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGD-----MTCALWDIET---------GQQTQVFHGHTGDVM-- 190 (343)
T ss_pred ccccccccceeeeeecCccceeEEEEEcCCCceEecCCC-----ceEEEEEccc---------ceEEEEecCCcccEE--
Q ss_pred ceecceeeeeeccCCCcEEEEEcCcCC
Q 008611 410 NWFLGLSLVVSSYSGEDVIVAFGGYNG 436 (559)
Q Consensus 410 ~~~iG~s~~~~~~~~~~~l~v~GG~~~ 436 (559)
++.....++ ..||-||++.
T Consensus 191 ------slsl~p~~~--ntFvSg~cD~ 209 (343)
T KOG0286|consen 191 ------SLSLSPSDG--NTFVSGGCDK 209 (343)
T ss_pred ------EEecCCCCC--CeEEeccccc
No 451
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=34.53 E-value=1.2e+02 Score=25.98 Aligned_cols=7 Identities=14% Similarity=0.449 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 008611 542 QDLTEAE 548 (559)
Q Consensus 542 ~~~~~~~ 548 (559)
.+++..+
T Consensus 103 ~dv~~v~ 109 (126)
T PF07889_consen 103 DDVDSVQ 109 (126)
T ss_pred HHHHHHH
Confidence 3333333
No 452
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=34.39 E-value=91 Score=26.50 Aligned_cols=42 Identities=36% Similarity=0.378 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHhhhhhHhhhh
Q 008611 517 ATLKAEKEELESSLSKEKL--QSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 517 ~~l~~e~~~~~~~l~~~~~--~~~~l~~~~~~~~~~~~~~~kel 558 (559)
.+++.++.++++.+++... +...++.+++.+++++.++-++|
T Consensus 23 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 66 (120)
T PF09969_consen 23 RELKAELEELEERLQELEDSLEVNGLEAELEELEARLRELIDEI 66 (120)
T ss_pred HHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444322 23446666666666666665555
No 453
>TIGR03789 pdsO proteobacterial sortase system OmpA family protein. A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the OmpA protein family (pfam00691). Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein.
Probab=34.39 E-value=88 Score=30.16 Aligned_cols=12 Identities=17% Similarity=0.069 Sum_probs=4.4
Q ss_pred hhhHHHHHHHHH
Q 008611 537 SIQLKQDLTEAE 548 (559)
Q Consensus 537 ~~~l~~~~~~~~ 548 (559)
+.+.+.++++++
T Consensus 110 ~~~~~~~~~~~~ 121 (239)
T TIGR03789 110 YQQAQVHLETLQ 121 (239)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 454
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=34.21 E-value=85 Score=24.23 Aligned_cols=24 Identities=13% Similarity=0.230 Sum_probs=9.8
Q ss_pred HHHhhhHHHHHHHHHhhhhhHhhh
Q 008611 534 KLQSIQLKQDLTEAESQNTDLYKV 557 (559)
Q Consensus 534 ~~~~~~l~~~~~~~~~~~~~~~ke 557 (559)
++++.+|+.+++.++.+|+++.++
T Consensus 6 ~eEn~~Lk~eiqkle~ELq~~~~~ 29 (76)
T PF07334_consen 6 QEENARLKEEIQKLEAELQQNKRE 29 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333334444444444444444333
No 455
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=34.16 E-value=1.1e+02 Score=28.51 Aligned_cols=28 Identities=4% Similarity=0.144 Sum_probs=18.9
Q ss_pred HHHHHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 531 SKEKLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 531 ~~~~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
.+.+.++..|+.++..+++.+.+.+|+|
T Consensus 167 ~~~~~~~~~l~~ei~~L~~klkEKer~L 194 (194)
T PF15619_consen 167 KEAQEEVKSLQEEIQRLNQKLKEKEREL 194 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3445556667777777777777777775
No 456
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=34.11 E-value=73 Score=29.46 Aligned_cols=41 Identities=20% Similarity=0.185 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhh
Q 008611 512 TEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNT 552 (559)
Q Consensus 512 ~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~ 552 (559)
.++..+.+++|+++++.++++.+.+.+.|+.|.+..++++.
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~eyd 192 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEYD 192 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 457
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=34.04 E-value=37 Score=29.49 Aligned_cols=22 Identities=36% Similarity=0.232 Sum_probs=9.5
Q ss_pred HHHHHHHhhhHHHHHHHHHhhh
Q 008611 530 LSKEKLQSIQLKQDLTEAESQN 551 (559)
Q Consensus 530 l~~~~~~~~~l~~~~~~~~~~~ 551 (559)
+++.++++.++++++++..+.+
T Consensus 25 l~~~~~~~~~~~~~l~~~~~~l 46 (144)
T PF04350_consen 25 LEELKKQLEQLEQQLEELLKKL 46 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 3444444444444444444433
No 458
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=33.96 E-value=1.1e+02 Score=21.06 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 008611 517 ATLKAEKEELESSLSKEKLQSIQ 539 (559)
Q Consensus 517 ~~l~~e~~~~~~~l~~~~~~~~~ 539 (559)
..|+++.+.++.+++..|....+
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~~fs~ 24 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQAAFSQ 24 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555554443
No 459
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=33.93 E-value=4.4e+02 Score=25.47 Aligned_cols=112 Identities=21% Similarity=0.195 Sum_probs=59.9
Q ss_pred eCCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEEEECCC
Q 008611 254 WENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLET 332 (559)
Q Consensus 254 ~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t 332 (559)
-.|.|+..||. ..+++.|+++++.+..- .-..-+-|+++.- .+-=++.|+.++. +-++|..|
T Consensus 125 ~enSi~~AgGD-------~~~y~~dlE~G~i~r~~----rGHtDYvH~vv~R~~~~qilsG~EDGt------vRvWd~kt 187 (325)
T KOG0649|consen 125 SENSILFAGGD-------GVIYQVDLEDGRIQREY----RGHTDYVHSVVGRNANGQILSGAEDGT------VRVWDTKT 187 (325)
T ss_pred CCCcEEEecCC-------eEEEEEEecCCEEEEEE----cCCcceeeeeeecccCcceeecCCCcc------EEEEeccc
Confidence 46888888875 25889999999877663 2222344554442 2344556776553 45678777
Q ss_pred CceEEe-cCCCC--CCCccccc--EEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEec
Q 008611 333 MTWDEI-DAVGV--PPSPRSDH--AAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRP 389 (559)
Q Consensus 333 ~~W~~~-~~~~~--~p~~r~~~--~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~ 389 (559)
.+-..+ .+-.. +-.|..+. .+...+.+ -+|+||.. .+-.|++...+-..+
T Consensus 188 ~k~v~~ie~yk~~~~lRp~~g~wigala~~ed-WlvCGgGp------~lslwhLrsse~t~v 242 (325)
T KOG0649|consen 188 QKHVSMIEPYKNPNLLRPDWGKWIGALAVNED-WLVCGGGP------KLSLWHLRSSESTCV 242 (325)
T ss_pred cceeEEeccccChhhcCcccCceeEEEeccCc-eEEecCCC------ceeEEeccCCCceEE
Confidence 655433 22111 11121222 33344455 56667653 244556655544443
No 460
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=33.90 E-value=48 Score=29.89 Aligned_cols=41 Identities=17% Similarity=0.076 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 518 TLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 518 ~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
.-+.++.+++.+++....++++++.+++++...+.+.++||
T Consensus 103 ~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~~~l~~~~~el 143 (181)
T KOG3335|consen 103 KRKQEIMELRLKVEKLENAIAELTKFFSQLHSKLNKPESEL 143 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccc
Confidence 34466667777777777777777777777776666666555
No 461
>PF11740 KfrA_N: Plasmid replication region DNA-binding N-term; InterPro: IPR021104 The KfrA family of protiens are encoded on plasmids, generally in or near gene clusters invloved in stable inheritance functions. These proteins are thought to form an all-helical structure, consisting of an N-terminal helix-turn-helix DNA binding domain and an extended coiled-coil tail. The best-characterised KfrA protein, encoded on the broad host-range Plasmid RK2, is a site-specific DNA-binding protein whose operator overlaps its own promoter. The DNA-binding domain is essential for function, while the coiled-coil domain is probably responsible for formation of multimers, and may provide an example of a bridge to host structures required for plasmid partitioning []. This entry represents the N-terminal DNA-binding domain.
Probab=33.87 E-value=1.2e+02 Score=25.41 Aligned_cols=35 Identities=29% Similarity=0.361 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhhC
Q 008611 525 ELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVIA 559 (559)
Q Consensus 525 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kelq 559 (559)
.++...+..+++...++.+++++..++++++.|++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~ 119 (120)
T PF11740_consen 85 ELEAARAELEQERAAAEAELAEAEAQAEELEAELA 119 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444445555555566666666677777766653
No 462
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.81 E-value=82 Score=30.28 Aligned_cols=31 Identities=16% Similarity=0.199 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 008611 518 TLKAEKEELESSLSKEKLQSIQLKQDLTEAE 548 (559)
Q Consensus 518 ~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~ 548 (559)
.|.+++..+|+++++.+.++.+++..++..+
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444
No 463
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=33.80 E-value=2.7e+02 Score=26.99 Aligned_cols=83 Identities=23% Similarity=0.252 Sum_probs=46.6
Q ss_pred eEEEEECCCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccccE
Q 008611 273 QVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHA 352 (559)
Q Consensus 273 ~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~ 352 (559)
+|...|+.+..- +... ++|......++-- +..+||.||.+. .+++||..|+.=...-..| .+---||
T Consensus 206 sV~Fwdaksf~~--lKs~-k~P~nV~SASL~P-~k~~fVaGged~------~~~kfDy~TgeEi~~~nkg---h~gpVhc 272 (334)
T KOG0278|consen 206 SVKFWDAKSFGL--LKSY-KMPCNVESASLHP-KKEFFVAGGEDF------KVYKFDYNTGEEIGSYNKG---HFGPVHC 272 (334)
T ss_pred eeEEeccccccc--eeec-cCccccccccccC-CCceEEecCcce------EEEEEeccCCceeeecccC---CCCceEE
Confidence 455566555432 2111 4665554433322 448999999753 3788888877544332222 2222366
Q ss_pred EEEEcCCEEEEEcCCC
Q 008611 353 AAVHAERYLLIFGGGS 368 (559)
Q Consensus 353 ~~~~~~~~l~v~GG~~ 368 (559)
+-...++.+|..|-.+
T Consensus 273 VrFSPdGE~yAsGSED 288 (334)
T KOG0278|consen 273 VRFSPDGELYASGSED 288 (334)
T ss_pred EEECCCCceeeccCCC
Confidence 6666688888887644
No 464
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=33.59 E-value=99 Score=26.88 Aligned_cols=9 Identities=33% Similarity=0.471 Sum_probs=3.3
Q ss_pred hhhHHHHHH
Q 008611 537 SIQLKQDLT 545 (559)
Q Consensus 537 ~~~l~~~~~ 545 (559)
+++|+.+|.
T Consensus 97 ie~lk~~L~ 105 (139)
T PF05615_consen 97 IEELKEELE 105 (139)
T ss_pred HHHHHHHHH
Confidence 333333333
No 465
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=33.40 E-value=6.2e+02 Score=26.97 Aligned_cols=223 Identities=8% Similarity=0.012 Sum_probs=0.0
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCCCCCcceE
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQV 274 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v 274 (559)
|.+|..--| .|+|.|||.+..-+++.--.......-......+..+---.+..+|.++++ ......
T Consensus 278 GkrIvFq~~-------GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~-------VSRGka 343 (668)
T COG4946 278 GKRIVFQNA-------GDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIAL-------VSRGKA 343 (668)
T ss_pred CcEEEEecC-------CcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEE-------EecCcE
Q ss_pred EEEECCCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccccEEE
Q 008611 275 KVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAA 354 (559)
Q Consensus 275 ~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~ 354 (559)
+.+++..+-=..+ ....|..+.-...++.-.++|-.+++. +-+||..+..-..+. +.--.-.++.
T Consensus 344 Fi~~~~~~~~iqv-----~~~~~VrY~r~~~~~e~~vigt~dgD~-----l~iyd~~~~e~kr~e-----~~lg~I~av~ 408 (668)
T COG4946 344 FIMRPWDGYSIQV-----GKKGGVRYRRIQVDPEGDVIGTNDGDK-----LGIYDKDGGEVKRIE-----KDLGNIEAVK 408 (668)
T ss_pred EEECCCCCeeEEc-----CCCCceEEEEEccCCcceEEeccCCce-----EEEEecCCceEEEee-----CCccceEEEE
Q ss_pred EEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEeccCCCCCCCCccccEEEEECCceecceeeeeeccCCCcEEEEEcCc
Q 008611 355 VHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGY 434 (559)
Q Consensus 355 ~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~~~~~~~p~~R~~hs~~~~~~~~~iG~s~~~~~~~~~~~l~v~GG~ 434 (559)
+-.+++-++++-.. -++|++|+.+++-..+. -+.-....-..|.. ..+.+.++=-
T Consensus 409 vs~dGK~~vvaNdr-----~el~vididngnv~~id-----kS~~~lItdf~~~~---------------nsr~iAYafP 463 (668)
T COG4946 409 VSPDGKKVVVANDR-----FELWVIDIDNGNVRLID-----KSEYGLITDFDWHP---------------NSRWIAYAFP 463 (668)
T ss_pred EcCCCcEEEEEcCc-----eEEEEEEecCCCeeEec-----ccccceeEEEEEcC---------------CceeEEEecC
Q ss_pred CCCCcccEEEEeCCCcceecccCCCCCCCCccccccc
Q 008611 435 NGRYNNEVHVLKPSHKSTLSSKMIETPVPDSVSAVQN 471 (559)
Q Consensus 435 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (559)
.|-+...|.+||..+........+..-.-.+.+....
T Consensus 464 ~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ 500 (668)
T COG4946 464 EGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDG 500 (668)
T ss_pred cceeeeeEEEEecCCCeEEEecCCcccccCcccCCCC
No 466
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=33.33 E-value=89 Score=31.26 Aligned_cols=51 Identities=8% Similarity=0.100 Sum_probs=0.0
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 508 HPETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 508 ~~~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
+++-..+.+.++++.+-++++...+...+++.++...+.++.++.+|..+|
T Consensus 113 qvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L 163 (302)
T PF09738_consen 113 QVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQL 163 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 467
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=33.29 E-value=8e+02 Score=28.23 Aligned_cols=232 Identities=15% Similarity=0.152 Sum_probs=0.0
Q ss_pred CCCCCCcc------cceeEEEECCEEEEEccCCCCcccCcEEEEEcCCCe--EEEeeeccccCCCCCCCCCCCCCCccce
Q 008611 179 SGQRPKAR------YEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWA--WSKIQAKAVAESTESPSPALLTPCAGHS 250 (559)
Q Consensus 179 ~g~~p~~r------~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~p~~r~~~~ 250 (559)
.|..+.++ ...+-+++++.||+... .+.++.+|..|++ |+.-.... ....+....+-+
T Consensus 172 tGd~~~~~~~~~~~~e~TPlvvgg~lYv~t~------~~~V~ALDa~TGk~lW~~d~~~~--------~~~~~~~~~cRG 237 (764)
T TIGR03074 172 TGDLKTPDDPGEATFQATPLKVGDTLYLCTP------HNKVIALDAATGKEKWKFDPKLK--------TEAGRQHQTCRG 237 (764)
T ss_pred CCCccccccccccccccCCEEECCEEEEECC------CCeEEEEECCCCcEEEEEcCCCC--------cccccccccccc
Q ss_pred eEEeCC------------------EEEEEeccCCCCCCcceEEEEECCCCe------------EEEeccCCCCCCCccce
Q 008611 251 LIPWEN------------------KLLSIAGHTKDPSEIIQVKVFDLQTCS------------WSTLKTYGKPPVSRGGQ 300 (559)
Q Consensus 251 ~~~~~~------------------~lyv~GG~~~~~~~~~~v~~yd~~t~~------------W~~~~~~g~~p~~r~~~ 300 (559)
.+.+++ +||+- .....++.+|..|++ |..--...+...-....
T Consensus 238 vay~~~p~~~~~~~~~~~p~~~~~rV~~~-------T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts 310 (764)
T TIGR03074 238 VSYYDAPAAAAGPAAPAAPADCARRIILP-------TSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTS 310 (764)
T ss_pred eEEecCCcccccccccccccccCCEEEEe-------cCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCccccccc
Q ss_pred EEEEECCEEEEEcCcCCCC----CCcCceEEEECCCCc--eEEecCCCCCCCcccc------------cEEEEEcCCEEE
Q 008611 301 SVTLVGTSLVIFGGEDAKR----SLLNDLHILDLETMT--WDEIDAVGVPPSPRSD------------HAAAVHAERYLL 362 (559)
Q Consensus 301 ~~~~~~~~lyv~GG~~~~~----~~~~~~~~yd~~t~~--W~~~~~~~~~p~~r~~------------~~~~~~~~~~l~ 362 (559)
+-++.++.||+ |+...+. .....|..||..|.+ |.--........+... ..+++-...-++
T Consensus 311 ~P~V~~g~VIv-G~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glv 389 (764)
T TIGR03074 311 PPLVAGTTVVI-GGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLV 389 (764)
T ss_pred CCEEECCEEEE-EecccccccccCCCcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeE
Q ss_pred EEcCCCC-------------CCCcCceEEEECCCC--eeEeccCCCCCCCCccccEEEEE-----CCceecceeeeeecc
Q 008611 363 IFGGGSH-------------AACFNDLHVLDLQTM--EWSRPTQQGEIPTPRAGHAGVTI-----GENWFLGLSLVVSSY 422 (559)
Q Consensus 363 v~GG~~~-------------~~~~~dv~~~d~~~~--~W~~~~~~~~~p~~R~~hs~~~~-----~~~~~iG~s~~~~~~ 422 (559)
.++-.+. +.+.+.+..+|++|. .|+.-....+.-.--.....+.+ +++
T Consensus 390 y~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~------------ 457 (764)
T TIGR03074 390 YLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGT------------ 457 (764)
T ss_pred EEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCc------------
Q ss_pred CCCcEEEEEcCcCCCCcccEEEEeCCCc
Q 008611 423 SGEDVIVAFGGYNGRYNNEVHVLKPSHK 450 (559)
Q Consensus 423 ~~~~~l~v~GG~~~~~~~~v~~~d~~~~ 450 (559)
.-.+++++.-+| .+|++|..+.
T Consensus 458 --~~~~v~~~~K~G----~~~vlDr~tG 479 (764)
T TIGR03074 458 --TVPALVAPTKQG----QIYVLDRRTG 479 (764)
T ss_pred --EeeEEEEECCCC----EEEEEECCCC
No 468
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=33.26 E-value=1.2e+02 Score=24.09 Aligned_cols=44 Identities=18% Similarity=0.181 Sum_probs=0.0
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 008611 508 HPETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQN 551 (559)
Q Consensus 508 ~~~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 551 (559)
+++..+..++.|+.+..+++...+..+.+.+.-++|-+.+.+||
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~Ri 68 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRL 68 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 469
>PRK11677 hypothetical protein; Provisional
Probab=33.19 E-value=1.5e+02 Score=25.72 Aligned_cols=45 Identities=13% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 514 HLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 514 ~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
....+|++|+++.+.+|++-++++...=.+-+++-..+.+--++|
T Consensus 29 ~~q~~le~eLe~~k~ele~YkqeV~~HFa~TA~Ll~~L~~~Y~~L 73 (134)
T PRK11677 29 RQQQALQYELEKNKAELEEYRQELVSHFARSAELLDTMAKDYRQL 73 (134)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 470
>PHA03385 IX capsid protein IX,hexon associated protein IX; Provisional
Probab=33.13 E-value=67 Score=27.02 Aligned_cols=33 Identities=27% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhhC
Q 008611 527 ESSLSKEKLQSIQLKQDLTEAESQNTDLYKVIA 559 (559)
Q Consensus 527 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kelq 559 (559)
|.+|...-.|++.|.+||+++-+|.++|..+-|
T Consensus 99 ed~L~~llaqLealsqqL~~ls~qv~~L~~~~~ 131 (135)
T PHA03385 99 EDKLLVLLAQLEALSQQLQELSQQVAQLREQTQ 131 (135)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh
No 471
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=33.10 E-value=5.7e+02 Score=26.48 Aligned_cols=132 Identities=11% Similarity=0.074 Sum_probs=0.0
Q ss_pred ceEEecccCCCCCCcccceeEEEECCEEEEEccCCCCcccCcEEEEEcC------CCeEEEeeeccccCCCCCCCCCCCC
Q 008611 171 DQWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLR------SWAWSKIQAKAVAESTESPSPALLT 244 (559)
Q Consensus 171 ~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~------t~~W~~~~~~~~~~~~~~~~~~~p~ 244 (559)
+.|+.+.. ..-..--++..+|++|++ .....+++++.. +-.|..-...+ .
T Consensus 190 ~~Wt~l~~-----~~~~~~DIi~~kGkfYAv------D~~G~l~~i~~~l~i~~v~~~i~~~~~~g-------------~ 245 (373)
T PLN03215 190 NVLKALKQ-----MGYHFSDIIVHKGQTYAL------DSIGIVYWINSDLEFSRFGTSLDENITDG-------------C 245 (373)
T ss_pred CeeeEccC-----CCceeeEEEEECCEEEEE------cCCCeEEEEecCCceeeecceecccccCC-------------c
Q ss_pred CCccceeEEeCCEEEEEeccCCCCCCc-------------ceEEEEECCCCeEEEeccCCCCCCCccceEEEEE------
Q 008611 245 PCAGHSLIPWENKLLSIAGHTKDPSEI-------------IQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV------ 305 (559)
Q Consensus 245 ~r~~~~~~~~~~~lyv~GG~~~~~~~~-------------~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~------ 305 (559)
.....-.+...|.|+++.......... -.|+..|....+|.++...|+.-.-.....+..+
T Consensus 246 ~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLgd~aLFlG~~~s~sv~a~e~p 325 (373)
T PLN03215 246 WTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLGDNAFVMATDTCFSVLAHEFY 325 (373)
T ss_pred ccCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccCCeEEEEECCccEEEecCCCC
Q ss_pred ---CCEEEEEcCcCCCCCCcCceEEEECCCCc
Q 008611 306 ---GTSLVIFGGEDAKRSLLNDLHILDLETMT 334 (559)
Q Consensus 306 ---~~~lyv~GG~~~~~~~~~~~~~yd~~t~~ 334 (559)
+|.||... -...++||+..++
T Consensus 326 G~k~NcIYFtd--------d~~~~v~~~~dg~ 349 (373)
T PLN03215 326 GCLPNSIYFTE--------DTMPKVFKLDNGN 349 (373)
T ss_pred CccCCEEEEEC--------CCcceEEECCCCC
No 472
>PRK15396 murein lipoprotein; Provisional
Probab=33.04 E-value=1.5e+02 Score=23.06 Aligned_cols=49 Identities=14% Similarity=0.166 Sum_probs=0.0
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhh
Q 008611 508 HPETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYK 556 (559)
Q Consensus 508 ~~~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~k 556 (559)
+++..+..++.|..+..+++...+..+...+.-+.|-.-+.+||....+
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~~~ 74 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQAT 74 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 473
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=32.88 E-value=1.2e+02 Score=27.96 Aligned_cols=50 Identities=8% Similarity=0.187 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhhC
Q 008611 510 ETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVIA 559 (559)
Q Consensus 510 ~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kelq 559 (559)
...+.-++.-..+..++....++.+.+...|+.+..+++.+|.+|.++++
T Consensus 129 ~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~ 178 (192)
T PF11180_consen 129 NRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVR 178 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 474
>PRK12705 hypothetical protein; Provisional
Probab=32.86 E-value=69 Score=34.58 Aligned_cols=52 Identities=12% Similarity=0.044 Sum_probs=0.0
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhhC
Q 008611 508 HPETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVIA 559 (559)
Q Consensus 508 ~~~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kelq 559 (559)
++++....++.....+.+.+++|......+.+.+.++++.++.+...+++|+
T Consensus 71 e~~~~~~~~~~~e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~ 122 (508)
T PRK12705 71 EARREREELQREEERLVQKEEQLDARAEKLDNLENQLEEREKALSARELELE 122 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 475
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=32.77 E-value=72 Score=29.51 Aligned_cols=39 Identities=23% Similarity=0.299 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhh
Q 008611 519 LKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKV 557 (559)
Q Consensus 519 l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ke 557 (559)
..++....++++++.++++.+.+.+++.+.+|.+.+++|
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 476
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=32.62 E-value=55 Score=34.90 Aligned_cols=54 Identities=28% Similarity=0.313 Sum_probs=0.0
Q ss_pred cCCCCcchHHHHHHHHHHHHHHHHHHHHHHH-------------HhhhHHHHHHHHHhhhhhHhhhh
Q 008611 505 ISKHPETTEHLIATLKAEKEELESSLSKEKL-------------QSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 505 ~~~~~~~~~~~~~~l~~e~~~~~~~l~~~~~-------------~~~~l~~~~~~~~~~~~~~~kel 558 (559)
+.++++..++.++++++++++++..+...++ +.+++.+...++.+++++++.+|
T Consensus 332 l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~ 398 (451)
T PF03961_consen 332 LKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEEL 398 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 477
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=32.51 E-value=1e+02 Score=27.44 Aligned_cols=43 Identities=19% Similarity=0.200 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHH---HHHHHHHhhhhhHhhhhC
Q 008611 517 ATLKAEKEELESSLSKEKLQSIQLK---QDLTEAESQNTDLYKVIA 559 (559)
Q Consensus 517 ~~l~~e~~~~~~~l~~~~~~~~~l~---~~~~~~~~~~~~~~kelq 559 (559)
++|+.|+.++.+.|.+.-+++.|++ .+=.+.-.+.-|.-||+|
T Consensus 50 ~eLkNeLREVREELkEKmeEIKQIKdiMDKDFDKL~EFVEIMKeMQ 95 (205)
T PF15079_consen 50 QELKNELREVREELKEKMEEIKQIKDIMDKDFDKLHEFVEIMKEMQ 95 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
No 478
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=32.44 E-value=65 Score=37.46 Aligned_cols=52 Identities=17% Similarity=0.173 Sum_probs=0.0
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHH-------HHHHHhhhHHHHHHHHHhhhhhHhhhhC
Q 008611 508 HPETTEHLIATLKAEKEELESSLS-------KEKLQSIQLKQDLTEAESQNTDLYKVIA 559 (559)
Q Consensus 508 ~~~~~~~~~~~l~~e~~~~~~~l~-------~~~~~~~~l~~~~~~~~~~~~~~~kelq 559 (559)
++++.+..++.+.+++.++++.+. ..+++.++++.+++...+.++.++.|++
T Consensus 449 ~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~ 507 (1041)
T KOG0243|consen 449 QIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQ 507 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 479
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=32.39 E-value=79 Score=30.84 Aligned_cols=53 Identities=25% Similarity=0.283 Sum_probs=0.0
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 506 SKHPETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 506 ~~~~~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
.++++..+..+..+++++.+.+..+.+.+.++...+.++.+++..-..+.+.+
T Consensus 199 ~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~ 251 (269)
T PF05278_consen 199 DRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTI 251 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 480
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=32.38 E-value=97 Score=32.37 Aligned_cols=49 Identities=16% Similarity=0.131 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 510 ETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 510 ~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
...+...+.++.+++.++.++...+.++++++.+++.++++++.+++++
T Consensus 133 ~~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~ 181 (423)
T TIGR01843 133 SLFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEEL 181 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 481
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=32.34 E-value=1.2e+02 Score=26.29 Aligned_cols=49 Identities=16% Similarity=0.105 Sum_probs=0.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhh
Q 008611 509 PETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKV 557 (559)
Q Consensus 509 ~~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ke 557 (559)
+......|..|..+.++-++...+...+..+....+...|+++++|.+|
T Consensus 42 l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~E 90 (135)
T TIGR03495 42 LASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRE 90 (135)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
No 482
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.30 E-value=1.6e+02 Score=22.42 Aligned_cols=51 Identities=22% Similarity=0.151 Sum_probs=0.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhhC
Q 008611 509 PETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVIA 559 (559)
Q Consensus 509 ~~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kelq 559 (559)
+.+.+-.++-..+-++++...+.+.+..+.+++.++.-+-.++.+++-..+
T Consensus 10 i~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~~~~~ 60 (72)
T COG2900 10 IIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQPSAI 60 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
No 483
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=32.21 E-value=74 Score=33.29 Aligned_cols=55 Identities=22% Similarity=0.192 Sum_probs=0.0
Q ss_pred cCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhHH----HHHHHHHhhhhhHhhhhC
Q 008611 505 ISKHPETTEHLIATLKAEKEELESSLSKEKLQSIQLK----QDLTEAESQNTDLYKVIA 559 (559)
Q Consensus 505 ~~~~~~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~----~~~~~~~~~~~~~~kelq 559 (559)
+++.+.+.+..+.+|..+++.++.+|.........++ .+......+++.||+||+
T Consensus 485 Lee~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~a~~~E~eklE~el~ 543 (622)
T COG5185 485 LEEDIKNLKHDINELTQILEKLELELSEANSKFELSKEENERELVAQRIEIEKLEKELN 543 (622)
T ss_pred HHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
No 484
>COG1422 Predicted membrane protein [Function unknown]
Probab=32.08 E-value=61 Score=30.02 Aligned_cols=43 Identities=9% Similarity=0.285 Sum_probs=0.0
Q ss_pred CCCCcchHHHHHHHHHHHHHHHH--------HHHHHHHHhhhHHHHHHHHH
Q 008611 506 SKHPETTEHLIATLKAEKEELES--------SLSKEKLQSIQLKQDLTEAE 548 (559)
Q Consensus 506 ~~~~~~~~~~~~~l~~e~~~~~~--------~l~~~~~~~~~l~~~~~~~~ 548 (559)
+++.++.|...++.+++.++.++ +|+++|.|..+.+.|+-..+
T Consensus 71 ~ekm~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~~Q~elmk~q 121 (201)
T COG1422 71 QEKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQRELMKMQ 121 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHh
No 485
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=31.93 E-value=1.4e+02 Score=24.24 Aligned_cols=40 Identities=30% Similarity=0.310 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhh
Q 008611 517 ATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYK 556 (559)
Q Consensus 517 ~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~k 556 (559)
+++..+...+..+++....++.+|+.++.+.+.-+.+|+.
T Consensus 1 Qe~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~ 40 (106)
T PF01920_consen 1 QELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEK 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 486
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.64 E-value=2.3e+02 Score=21.55 Aligned_cols=49 Identities=12% Similarity=0.017 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhhC
Q 008611 511 TTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVIA 559 (559)
Q Consensus 511 ~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kelq 559 (559)
+.++.|.+|.-...--+..+++....+.+.+..++..+.++.-|.+.++
T Consensus 5 ~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~ 53 (72)
T COG2900 5 ELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLK 53 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 487
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=31.59 E-value=92 Score=35.81 Aligned_cols=50 Identities=16% Similarity=0.167 Sum_probs=0.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 509 PETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 509 ~~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
+.+.+..+.++.+++++.+.++++..++++++.+++++.++++++..++|
T Consensus 511 ~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l 560 (782)
T PRK00409 511 IGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKL 560 (782)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 488
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=31.31 E-value=69 Score=31.09 Aligned_cols=40 Identities=15% Similarity=0.159 Sum_probs=0.0
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 008611 508 HPETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEA 547 (559)
Q Consensus 508 ~~~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~ 547 (559)
|.+.+.+...+|++|+.+.+++++..+.++..|+.+..++
T Consensus 87 QRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kL 126 (248)
T PF08172_consen 87 QRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKL 126 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 489
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=31.31 E-value=5.8e+02 Score=25.97 Aligned_cols=236 Identities=12% Similarity=0.070 Sum_probs=0.0
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCCCCCcceE
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQV 274 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v 274 (559)
+..||++.. .+...--..|.+|...++-+.+.... .+..--+|.++.-++.+++..-+... .+
T Consensus 51 ~~~LY~v~~-~~~~ggvaay~iD~~~G~Lt~ln~~~-----------~~g~~p~yvsvd~~g~~vf~AnY~~g-----~v 113 (346)
T COG2706 51 QRHLYVVNE-PGEEGGVAAYRIDPDDGRLTFLNRQT-----------LPGSPPCYVSVDEDGRFVFVANYHSG-----SV 113 (346)
T ss_pred CCEEEEEEe-cCCcCcEEEEEEcCCCCeEEEeeccc-----------cCCCCCeEEEECCCCCEEEEEEccCc-----eE
Q ss_pred EEEECCCCe-----EEEeccCCCCCCCc-----cceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCC
Q 008611 275 KVFDLQTCS-----WSTLKTYGKPPVSR-----GGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVP 344 (559)
Q Consensus 275 ~~yd~~t~~-----W~~~~~~g~~p~~r-----~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~ 344 (559)
.+|-+..+- -..+.-.|.-|.+| .+++-..-++++++.--...+. +..|++..+.-+......-.
T Consensus 114 ~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dr-----i~~y~~~dg~L~~~~~~~v~ 188 (346)
T COG2706 114 SVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDR-----IFLYDLDDGKLTPADPAEVK 188 (346)
T ss_pred EEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCce-----EEEEEcccCccccccccccC
Q ss_pred CCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEeccCCCCCCCC----ccccEEEEECCceec-------
Q 008611 345 PSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTP----RAGHAGVTIGENWFL------- 413 (559)
Q Consensus 345 p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~~~~~~~p~~----R~~hs~~~~~~~~~i------- 413 (559)
|..--.|-+.--++..+|++.--+... ++|.||....+.+.+.....+|.. +...+..+..+.-|+
T Consensus 189 ~G~GPRHi~FHpn~k~aY~v~EL~stV---~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~ 265 (346)
T COG2706 189 PGAGPRHIVFHPNGKYAYLVNELNSTV---DVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGH 265 (346)
T ss_pred CCCCcceEEEcCCCcEEEEEeccCCEE---EEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCC
Q ss_pred ------------------------ceeeeeeccCCCcEEEEEcCcCCCCcccEEEEeCCCcceeccc
Q 008611 414 ------------------------GLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSHKSTLSSK 456 (559)
Q Consensus 414 ------------------------G~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~~d~~~~~~~~~~ 456 (559)
|.......++..+.++++-+.+++. -.|+.-|.+++......
T Consensus 266 dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~-i~vf~~d~~TG~L~~~~ 331 (346)
T COG2706 266 DSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDN-ITVFERDKETGRLTLLG 331 (346)
T ss_pred CeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCc-EEEEEEcCCCceEEecc
No 490
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=31.27 E-value=1.4e+02 Score=28.22 Aligned_cols=46 Identities=13% Similarity=0.206 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhh
Q 008611 512 TEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKV 557 (559)
Q Consensus 512 ~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ke 557 (559)
.++.++++..++.+++..+.........+++++++.+.+.+++++.
T Consensus 29 l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~ 74 (219)
T TIGR02977 29 IRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEK 74 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 491
>PHA03158 hypothetical protein; Provisional
Probab=31.21 E-value=89 Score=28.48 Aligned_cols=39 Identities=21% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 520 KAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 520 ~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
++|+..+.+|+-...+.+-+-.+...++|++++||+|.|
T Consensus 232 ~~EK~~~~kQllka~kkc~~~s~~~~~leeei~eleks~ 270 (273)
T PHA03158 232 AKEKAAILKQLLKAAKKCCKNSEHEKELEEEIEELEKSL 270 (273)
T ss_pred HHHhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhh
No 492
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=31.14 E-value=1.4e+02 Score=25.17 Aligned_cols=41 Identities=12% Similarity=0.180 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhh
Q 008611 512 TEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNT 552 (559)
Q Consensus 512 ~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~ 552 (559)
.+..++.+.++++.+++++++.+.....|+..+...+.+++
T Consensus 78 ~~~~~~~l~~~~~~l~~~~~~l~~~~~~L~~~~~~~~~~~~ 118 (118)
T cd04776 78 LEKMLEKIEKRRAELEQQRRDIDAALAELDAAEERCRERLA 118 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 493
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=31.13 E-value=1.2e+02 Score=28.87 Aligned_cols=45 Identities=29% Similarity=0.367 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhH
Q 008611 510 ETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDL 554 (559)
Q Consensus 510 ~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 554 (559)
...++.+..++.++++....+...+.++.+|+.++.+.+++...+
T Consensus 95 ~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l 139 (225)
T COG1842 95 QSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEAL 139 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 494
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=31.09 E-value=1e+02 Score=28.77 Aligned_cols=51 Identities=12% Similarity=0.065 Sum_probs=0.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhhC
Q 008611 509 PETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVIA 559 (559)
Q Consensus 509 ~~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kelq 559 (559)
+......+..+.+++..++..-+...+...+++++.+++..+....-.++|
T Consensus 88 L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evq 138 (201)
T PF13851_consen 88 LQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQ 138 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 495
>PRK11546 zraP zinc resistance protein; Provisional
Probab=30.81 E-value=1.1e+02 Score=26.86 Aligned_cols=52 Identities=10% Similarity=0.181 Sum_probs=0.0
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-------HHHHHHHhhhhhHhhhh
Q 008611 507 KHPETTEHLIATLKAEKEELESSLSKEKLQSIQLK-------QDLTEAESQNTDLYKVI 558 (559)
Q Consensus 507 ~~~~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~-------~~~~~~~~~~~~~~kel 558 (559)
++.+..+.+.++-..+.++++++|-..+.|+..|- +.+.++.+++.+|..+|
T Consensus 47 EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL 105 (143)
T PRK11546 47 EQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSL 105 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
No 496
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=30.81 E-value=1.4e+02 Score=25.92 Aligned_cols=50 Identities=16% Similarity=0.106 Sum_probs=0.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 509 PETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 509 ~~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
+...+..+..+..++..+....++..++-.+|..+++.....+...+++|
T Consensus 35 ~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i 84 (135)
T TIGR03495 35 LKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRI 84 (135)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=30.71 E-value=1.1e+02 Score=30.69 Aligned_cols=51 Identities=16% Similarity=0.165 Sum_probs=0.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhhC
Q 008611 509 PETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVIA 559 (559)
Q Consensus 509 ~~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kelq 559 (559)
+...+++-+.++-+++.+.+...+.+++.++|-++++|.....++|--|-|
T Consensus 136 i~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQ 186 (401)
T PF06785_consen 136 IRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQ 186 (401)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhh
No 498
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=30.68 E-value=2e+02 Score=22.44 Aligned_cols=47 Identities=17% Similarity=0.240 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhhC
Q 008611 510 ETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVIA 559 (559)
Q Consensus 510 ~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kelq 559 (559)
++.+..++.-..|++.+++.+-+.+.+-.+++++- |.++..|.+||.
T Consensus 28 ~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~Y---EeEI~rLr~eLe 74 (79)
T PF08581_consen 28 DEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQY---EEEIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
No 499
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=30.66 E-value=1.2e+02 Score=30.93 Aligned_cols=44 Identities=30% Similarity=0.334 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 512 TEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 512 ~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
..+.+.+.++.+++.|+++.+...+ +.++|.+.+.++++++++|
T Consensus 322 ~~~ki~~~e~~l~~~E~~l~~e~~~---~n~~Le~~~~~l~~~e~~l 365 (373)
T COG5019 322 FTEKIREKEKRLEELEQNLIEERKE---LNSKLEEIQKKLEDLEKRL 365 (373)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
No 500
>PRK10698 phage shock protein PspA; Provisional
Probab=30.65 E-value=1.5e+02 Score=28.18 Aligned_cols=46 Identities=17% Similarity=0.255 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhh
Q 008611 512 TEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKV 557 (559)
Q Consensus 512 ~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ke 557 (559)
..+.++++...+.+++..+.........+++++++.+.+.+++++.
T Consensus 29 l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~k 74 (222)
T PRK10698 29 VRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEK 74 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!