Query 008611
Match_columns 559
No_of_seqs 502 out of 3183
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 07:35:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008611.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008611hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ii7_A Kelch-like protein 7; p 100.0 2.8E-39 9.6E-44 325.2 33.8 248 164-455 23-278 (306)
2 1zgk_A Kelch-like ECH-associat 100.0 2.4E-39 8.2E-44 326.2 33.2 247 164-455 38-293 (308)
3 2xn4_A Kelch-like protein 2; s 100.0 5E-39 1.7E-43 322.7 34.6 249 164-456 29-283 (302)
4 2vpj_A Kelch-like protein 12; 100.0 3.2E-38 1.1E-42 316.6 33.0 247 164-455 30-284 (301)
5 4asc_A Kelch repeat and BTB do 100.0 9.4E-39 3.2E-43 322.9 28.1 249 165-455 13-283 (315)
6 2woz_A Kelch repeat and BTB do 100.0 5.4E-38 1.9E-42 317.7 29.3 255 159-455 18-293 (318)
7 1zgk_A Kelch-like ECH-associat 100.0 2.2E-36 7.7E-41 304.5 27.9 235 180-456 9-247 (308)
8 2uvk_A YJHT; unknown function, 100.0 2.7E-36 9.4E-41 310.1 26.8 246 171-456 43-349 (357)
9 3ii7_A Kelch-like protein 7; p 100.0 2.7E-34 9.1E-39 288.8 30.7 217 195-456 11-232 (306)
10 2xn4_A Kelch-like protein 2; s 100.0 2.3E-34 7.9E-39 288.7 29.7 220 164-409 76-300 (302)
11 2vpj_A Kelch-like protein 12; 100.0 5.8E-34 2E-38 285.6 30.5 222 193-456 12-238 (301)
12 2woz_A Kelch repeat and BTB do 100.0 2.7E-34 9.1E-39 290.6 24.6 215 167-410 80-309 (318)
13 4asc_A Kelch repeat and BTB do 100.0 1.7E-34 5.9E-39 291.6 22.7 215 167-410 69-299 (315)
14 2zwa_A Leucine carboxyl methyl 100.0 7.3E-34 2.5E-38 316.4 28.6 248 172-458 378-644 (695)
15 2uvk_A YJHT; unknown function, 100.0 2.4E-33 8.3E-38 288.1 27.3 235 181-456 5-301 (357)
16 2zwa_A Leucine carboxyl methyl 100.0 1.3E-33 4.5E-38 314.3 25.7 251 164-449 411-694 (695)
17 1hbk_A ACBP, acyl-COA binding 100.0 1.5E-31 5.1E-36 212.6 8.3 88 12-107 2-89 (89)
18 2cop_A Acyl-coenzyme A binding 100.0 2.8E-31 9.6E-36 218.0 9.8 95 7-111 3-97 (109)
19 3epy_A Acyl-COA-binding domain 100.0 1.3E-31 4.5E-36 211.8 6.2 87 10-106 2-88 (89)
20 1st7_A ACBP, acyl-COA-binding 100.0 1.4E-31 4.8E-36 211.3 5.7 85 12-106 1-85 (86)
21 2cqu_A Peroxisomal D3,D2-enoyl 100.0 9.7E-31 3.3E-35 215.9 9.5 99 2-111 7-105 (116)
22 2lbb_A Acyl COA binding protei 100.0 9.2E-31 3.1E-35 208.5 5.3 84 14-107 12-96 (96)
23 2cb8_A Acyl-COA-binding protei 100.0 2.1E-30 7.1E-35 204.6 6.7 84 13-106 3-86 (87)
24 3fp5_A Acyl-COA binding protei 100.0 6.8E-30 2.3E-34 207.7 7.1 89 10-104 2-90 (106)
25 2wh5_A Acyl-COA-binding domain 100.0 5.1E-30 1.7E-34 208.8 5.3 96 9-110 5-100 (106)
26 3flv_A Acyl-COA-binding domain 100.0 1.8E-29 6E-34 208.0 5.7 90 11-106 23-112 (119)
27 1k3i_A Galactose oxidase precu 99.9 1E-26 3.6E-31 258.0 24.7 242 171-456 176-504 (656)
28 1k3i_A Galactose oxidase precu 99.9 2.6E-26 8.8E-31 254.9 23.1 241 166-447 220-547 (656)
29 3mbr_X Glutamine cyclotransfer 98.0 0.0015 5.3E-08 61.7 22.6 160 187-386 22-182 (243)
30 3dsm_A Uncharacterized protein 97.9 0.0054 1.8E-07 60.9 26.5 208 183-452 41-256 (328)
31 1mix_A Talin; focal adhesion, 97.7 5E-05 1.7E-09 70.6 7.2 70 36-106 32-115 (206)
32 3nol_A Glutamine cyclotransfer 97.6 0.0084 2.9E-07 57.2 21.2 158 189-388 46-206 (262)
33 3dsm_A Uncharacterized protein 97.5 0.033 1.1E-06 55.0 25.6 207 190-449 88-302 (328)
34 3nok_A Glutaminyl cyclase; bet 97.5 0.008 2.7E-07 57.4 19.2 156 188-386 57-213 (268)
35 2iwa_A Glutamine cyclotransfer 97.5 0.036 1.2E-06 53.1 23.7 159 189-386 24-184 (266)
36 3mbr_X Glutamine cyclotransfer 97.1 0.061 2.1E-06 50.7 19.9 118 244-386 19-136 (243)
37 2ovr_B FBW7, F-BOX/WD repeat p 96.9 0.21 7.1E-06 51.2 23.9 160 251-450 284-443 (445)
38 1l0q_A Surface layer protein; 96.7 0.12 4E-06 51.8 19.7 147 196-389 2-153 (391)
39 2hqs_A Protein TOLB; TOLB, PAL 96.5 0.14 4.8E-06 52.4 19.1 197 195-451 189-389 (415)
40 3vgz_A Uncharacterized protein 96.4 0.71 2.4E-05 45.0 23.1 158 195-387 52-219 (353)
41 3v9f_A Two-component system se 96.3 0.27 9.2E-06 54.8 21.4 166 195-400 460-628 (781)
42 3nol_A Glutamine cyclotransfer 96.2 0.29 1E-05 46.4 17.9 114 247-386 44-158 (262)
43 3bws_A Protein LP49; two-domai 96.2 0.36 1.2E-05 48.9 20.1 143 212-388 102-248 (433)
44 1gxr_A ESG1, transducin-like e 96.2 0.63 2.2E-05 44.8 21.1 189 195-452 108-299 (337)
45 4ery_A WD repeat-containing pr 96.2 0.85 2.9E-05 43.8 21.9 147 195-386 76-226 (312)
46 3jrp_A Fusion protein of prote 96.1 0.22 7.6E-06 49.0 17.7 106 195-333 22-135 (379)
47 3q7m_A Lipoprotein YFGL, BAMB; 96.0 1.4 4.8E-05 43.7 27.7 160 190-389 48-215 (376)
48 1l0q_A Surface layer protein; 95.9 0.46 1.6E-05 47.3 19.3 147 195-386 85-236 (391)
49 2iwa_A Glutamine cyclotransfer 95.9 0.73 2.5E-05 44.0 19.2 114 249-386 24-138 (266)
50 1p22_A F-BOX/WD-repeat protein 95.9 0.75 2.6E-05 46.8 21.0 148 193-386 140-288 (435)
51 2hqs_A Protein TOLB; TOLB, PAL 95.8 1.1 3.7E-05 45.6 21.9 160 195-389 143-306 (415)
52 1kb0_A Quinohemoprotein alcoho 95.8 3 0.0001 45.5 26.3 132 189-339 71-208 (677)
53 4aez_A CDC20, WD repeat-contai 95.7 0.81 2.8E-05 46.0 20.2 136 211-385 113-250 (401)
54 1k8k_C P40, ARP2/3 complex 41 95.7 0.61 2.1E-05 45.8 18.7 150 195-382 19-172 (372)
55 2ovr_B FBW7, F-BOX/WD repeat p 95.6 2.3 7.9E-05 43.1 24.0 150 251-452 244-394 (445)
56 3vgz_A Uncharacterized protein 95.6 1.9 6.4E-05 41.8 24.4 201 195-452 100-306 (353)
57 4aez_A CDC20, WD repeat-contai 95.5 0.55 1.9E-05 47.2 18.2 153 255-452 228-383 (401)
58 3q7m_A Lipoprotein YFGL, BAMB; 95.5 2.2 7.5E-05 42.3 23.9 149 191-388 139-303 (376)
59 3bws_A Protein LP49; two-domai 95.5 2.3 8E-05 42.7 22.9 153 195-387 180-338 (433)
60 3jrp_A Fusion protein of prote 95.4 0.3 1E-05 48.1 15.3 149 196-384 69-241 (379)
61 2ojh_A Uncharacterized protein 95.4 1 3.5E-05 42.1 18.5 158 195-389 52-212 (297)
62 4ery_A WD repeat-containing pr 95.3 1.7 6E-05 41.5 20.4 146 195-386 34-183 (312)
63 2z3z_A Dipeptidyl aminopeptida 95.2 1.4 4.7E-05 48.0 21.1 156 210-389 234-397 (706)
64 3nok_A Glutaminyl cyclase; bet 95.0 0.77 2.6E-05 43.6 15.8 112 247-387 56-168 (268)
65 3u4y_A Uncharacterized protein 94.8 1.9 6.4E-05 41.5 18.8 145 195-383 9-160 (331)
66 3nmd_A CGMP dependent protein 94.5 0.1 3.5E-06 38.3 6.4 43 516-558 21-63 (72)
67 1gxr_A ESG1, transducin-like e 94.5 2.7 9.3E-05 40.1 19.2 146 195-387 152-300 (337)
68 1yiq_A Quinohemoprotein alcoho 94.4 7.1 0.00024 42.6 28.5 131 189-338 64-200 (689)
69 3fm0_A Protein CIAO1; WDR39,SG 94.3 1.3 4.4E-05 43.5 16.5 156 195-389 27-187 (345)
70 4a2l_A BT_4663, two-component 94.2 0.88 3E-05 50.7 16.6 157 211-400 471-631 (795)
71 1jmx_B Amine dehydrogenase; ox 94.2 1.8 6.2E-05 41.8 17.3 159 195-387 10-179 (349)
72 3jro_A Fusion protein of prote 94.2 1 3.4E-05 49.9 16.9 106 195-333 20-133 (753)
73 1p22_A F-BOX/WD-repeat protein 94.1 3.8 0.00013 41.4 20.1 147 194-385 181-327 (435)
74 2aq5_A Coronin-1A; WD40 repeat 94.1 2.4 8.1E-05 42.4 18.4 154 195-384 93-255 (402)
75 2ecf_A Dipeptidyl peptidase IV 94.0 1.1 3.8E-05 49.0 16.9 127 195-340 47-189 (741)
76 1kv9_A Type II quinohemoprotei 94.0 8.4 0.00029 41.8 26.3 130 189-338 60-195 (668)
77 3jro_A Fusion protein of prote 93.9 0.55 1.9E-05 52.0 14.2 150 196-384 67-239 (753)
78 1pjx_A Dfpase, DIISOPROPYLFLUO 93.9 4.5 0.00015 38.4 19.7 162 195-385 28-210 (314)
79 3dwl_C Actin-related protein 2 93.9 0.17 5.7E-06 50.3 9.0 152 195-385 22-179 (377)
80 3hfq_A Uncharacterized protein 93.9 2.6 8.8E-05 41.0 17.7 148 212-388 19-177 (347)
81 3ow8_A WD repeat-containing pr 93.8 5 0.00017 38.7 21.5 107 255-386 175-282 (321)
82 4gqb_B Methylosome protein 50; 93.8 3.4 0.00012 40.6 18.5 107 255-385 138-248 (344)
83 1ri6_A Putative isomerase YBHE 93.8 4.6 0.00016 38.6 19.3 150 195-382 49-208 (343)
84 3v7d_B Cell division control p 93.7 5.3 0.00018 40.5 20.6 148 195-388 279-426 (464)
85 3u4y_A Uncharacterized protein 93.7 1.7 5.9E-05 41.8 15.9 152 195-386 51-210 (331)
86 3ow8_A WD repeat-containing pr 93.7 5.3 0.00018 38.6 21.1 150 195-387 91-241 (321)
87 2z2n_A Virginiamycin B lyase; 93.5 4.9 0.00017 37.6 21.7 156 189-389 102-260 (299)
88 3ju4_A Endo-N-acetylneuraminid 93.5 3.9 0.00013 40.7 17.2 179 172-367 271-481 (670)
89 1got_B GT-beta; complex (GTP-b 93.5 6 0.00021 38.4 21.8 148 255-450 154-302 (340)
90 3e5z_A Putative gluconolactona 93.4 5.4 0.00018 37.7 21.0 159 189-386 31-206 (296)
91 2z3z_A Dipeptidyl aminopeptida 93.3 11 0.00037 40.8 23.8 115 270-390 233-351 (706)
92 1rwi_B Serine/threonine-protei 93.3 5.1 0.00017 37.0 19.1 149 195-388 34-185 (270)
93 1erj_A Transcriptional repress 93.2 4.1 0.00014 40.6 18.2 148 195-384 134-288 (393)
94 3vl1_A 26S proteasome regulato 93.1 6.4 0.00022 39.1 19.6 104 195-335 108-215 (420)
95 3hfq_A Uncharacterized protein 93.1 4.1 0.00014 39.5 17.7 163 195-389 50-226 (347)
96 4e54_B DNA damage-binding prot 93.1 1.7 5.9E-05 44.1 15.4 149 195-385 131-284 (435)
97 3g4e_A Regucalcin; six bladed 93.1 6.1 0.00021 37.6 18.6 148 195-381 24-178 (297)
98 3hnw_A Uncharacterized protein 93.1 0.085 2.9E-06 44.8 4.3 51 508-558 83-133 (138)
99 1r5m_A SIR4-interacting protei 92.9 5.4 0.00018 39.4 18.6 162 195-387 160-323 (425)
100 4f7g_A Talin-1; alpha-helix bu 92.9 0.19 6.6E-06 46.6 7.0 69 36-105 43-125 (222)
101 1r5m_A SIR4-interacting protei 92.7 5 0.00017 39.7 18.1 149 195-385 119-280 (425)
102 1pjx_A Dfpase, DIISOPROPYLFLUO 92.7 4 0.00014 38.7 16.8 155 196-384 83-257 (314)
103 3pe7_A Oligogalacturonate lyas 92.6 8.3 0.00029 37.8 20.5 153 211-390 60-232 (388)
104 3ei3_B DNA damage-binding prot 92.6 8.4 0.00029 37.8 19.7 145 197-383 87-236 (383)
105 4e54_B DNA damage-binding prot 92.5 1.8 6.2E-05 44.0 14.6 110 255-385 131-242 (435)
106 1got_B GT-beta; complex (GTP-b 92.5 8.1 0.00028 37.4 20.1 108 255-385 195-303 (340)
107 3zwl_B Eukaryotic translation 92.5 6 0.00021 38.1 18.0 152 195-383 43-206 (369)
108 2xdw_A Prolyl endopeptidase; a 92.4 13 0.00043 40.5 22.1 120 255-389 243-375 (710)
109 4gqb_B Methylosome protein 50; 92.3 3.8 0.00013 40.2 16.3 149 195-388 138-294 (344)
110 1ef1_A Moesin; membrane, FERM 92.3 0.16 5.5E-06 49.4 5.9 70 36-106 110-199 (294)
111 1k8k_C P40, ARP2/3 complex 41 92.1 1.7 5.8E-05 42.4 13.3 109 255-384 19-128 (372)
112 3c5m_A Oligogalacturonate lyas 92.0 5.7 0.00019 39.0 17.3 154 211-390 168-336 (396)
113 2qc5_A Streptogramin B lactona 91.9 8.1 0.00028 36.1 20.6 150 195-389 72-223 (300)
114 4gga_A P55CDC, cell division c 91.9 11 0.00038 37.7 21.2 136 211-384 125-262 (420)
115 3scy_A Hypothetical bacterial 91.9 9.9 0.00034 37.0 21.3 160 197-384 14-187 (361)
116 3mkq_A Coatomer beta'-subunit; 91.8 5.2 0.00018 44.0 18.4 148 195-386 66-220 (814)
117 2dg1_A DRP35, lactonase; beta 91.8 2.4 8.2E-05 41.0 14.0 156 195-383 55-213 (333)
118 2ojh_A Uncharacterized protein 91.7 8.1 0.00028 35.6 19.3 146 209-389 20-168 (297)
119 3vl1_A 26S proteasome regulato 91.6 4.2 0.00014 40.5 15.9 107 255-387 108-216 (420)
120 3v7d_B Cell division control p 91.6 13 0.00043 37.6 21.1 66 306-386 279-344 (464)
121 4a11_B DNA excision repair pro 91.6 3.9 0.00013 40.3 15.5 106 255-384 111-219 (408)
122 2xdw_A Prolyl endopeptidase; a 91.6 7 0.00024 42.6 18.8 180 193-390 81-283 (710)
123 3mkq_A Coatomer beta'-subunit; 91.5 4.3 0.00015 44.6 17.3 147 195-384 24-173 (814)
124 1ri6_A Putative isomerase YBHE 91.5 9.7 0.00033 36.2 18.8 161 195-390 140-317 (343)
125 4g56_B MGC81050 protein; prote 91.5 3.1 0.00011 41.0 14.6 108 255-385 150-260 (357)
126 4a11_B DNA excision repair pro 91.5 3.2 0.00011 40.9 14.8 152 195-386 111-279 (408)
127 1kb0_A Quinohemoprotein alcoho 91.4 10 0.00035 41.2 19.7 123 251-389 73-207 (677)
128 2qc5_A Streptogramin B lactona 91.3 9.3 0.00032 35.6 22.5 150 195-389 30-181 (300)
129 1pby_B Quinohemoprotein amine 91.3 7.8 0.00027 36.8 17.0 92 324-451 220-312 (337)
130 2z2n_A Virginiamycin B lyase; 91.3 9.4 0.00032 35.6 23.3 149 195-389 25-176 (299)
131 4g56_B MGC81050 protein; prote 91.2 1.2 4.3E-05 44.0 11.3 150 195-388 150-306 (357)
132 2ghs_A AGR_C_1268P; regucalcin 91.2 11 0.00038 36.4 20.9 147 195-382 60-209 (326)
133 1rwi_B Serine/threonine-protei 91.1 9.2 0.00031 35.2 17.3 152 190-386 71-225 (270)
134 4aow_A Guanine nucleotide-bind 91.1 11 0.00036 35.9 19.2 148 195-385 97-248 (340)
135 1vyh_C Platelet-activating fac 91.1 9.5 0.00033 38.2 18.1 147 195-387 119-269 (410)
136 3fm0_A Protein CIAO1; WDR39,SG 91.0 1.6 5.5E-05 42.8 11.8 109 255-384 27-137 (345)
137 3azo_A Aminopeptidase; POP fam 91.0 3.9 0.00013 44.0 15.8 155 210-390 160-332 (662)
138 2ad6_A Methanol dehydrogenase 90.9 18 0.00063 38.3 26.9 130 189-338 56-193 (571)
139 4a2l_A BT_4663, two-component 90.9 22 0.00075 39.2 27.1 189 159-390 56-251 (795)
140 1nir_A Nitrite reductase; hemo 90.7 12 0.0004 39.5 18.9 162 189-389 182-361 (543)
141 1sq9_A Antiviral protein SKI8; 90.6 14 0.00046 36.2 19.6 110 257-387 82-220 (397)
142 1h4r_A Merlin; FERM, neurofibr 90.6 0.31 1.1E-05 47.8 5.9 69 36-105 130-218 (314)
143 3ei3_B DNA damage-binding prot 90.5 7.8 0.00027 38.0 16.5 112 257-389 87-200 (383)
144 1q7f_A NHL, brain tumor CG1071 90.5 11 0.00038 35.1 25.5 157 195-389 40-200 (286)
145 3qij_A Protein 4.1; cytoskelet 90.4 0.37 1.3E-05 46.8 6.2 71 36-107 124-206 (296)
146 2dg1_A DRP35, lactonase; beta 90.2 6.2 0.00021 37.9 15.2 121 255-389 55-177 (333)
147 1q7f_A NHL, brain tumor CG1071 90.2 12 0.00041 34.9 22.0 155 195-389 88-244 (286)
148 3dwl_C Actin-related protein 2 90.0 0.51 1.7E-05 46.7 7.1 109 255-385 22-133 (377)
149 3fvz_A Peptidyl-glycine alpha- 90.0 14 0.00049 35.5 24.6 149 211-388 69-232 (329)
150 1qhu_A Protein (hemopexin); be 89.9 4.3 0.00015 41.8 14.0 59 195-282 158-216 (460)
151 3g4e_A Regucalcin; six bladed 89.8 5.5 0.00019 37.9 14.2 160 195-387 64-233 (297)
152 3hnw_A Uncharacterized protein 89.4 0.34 1.2E-05 41.1 4.3 50 509-558 77-126 (138)
153 1pex_A Collagenase-3, MMP-13; 89.3 12 0.00042 33.8 17.0 156 190-387 28-196 (207)
154 1jmx_B Amine dehydrogenase; ox 89.2 1.7 5.9E-05 41.9 10.2 115 255-384 10-135 (349)
155 3ivf_A Talin-1; FERM domain, c 88.9 0.72 2.5E-05 46.4 7.2 69 36-105 197-279 (371)
156 1w6s_A Methanol dehydrogenase 88.9 27 0.00093 37.2 24.4 129 189-339 56-200 (599)
157 3lrv_A PRE-mRNA-splicing facto 88.6 18 0.00062 34.8 18.8 66 306-385 138-203 (343)
158 1pgu_A Actin interacting prote 88.5 15 0.0005 38.5 17.8 111 255-386 77-195 (615)
159 3sfz_A APAF-1, apoptotic pepti 88.5 30 0.001 40.1 21.8 145 195-385 626-776 (1249)
160 3iuj_A Prolyl endopeptidase; h 88.4 31 0.0011 37.3 21.2 168 195-390 139-324 (693)
161 2bkl_A Prolyl endopeptidase; m 88.2 8.7 0.0003 41.7 16.0 165 195-389 178-357 (695)
162 2xbg_A YCF48-like protein; pho 88.2 20 0.00067 34.7 20.3 172 172-390 110-286 (327)
163 3mq7_A Bone marrow stromal ant 88.2 1.1 3.7E-05 35.8 6.1 42 516-557 59-100 (121)
164 3dm0_A Maltose-binding peripla 88.1 23 0.00079 38.1 19.3 151 195-386 441-595 (694)
165 3zwl_B Eukaryotic translation 88.0 8.7 0.0003 36.9 14.6 107 255-383 43-151 (369)
166 1flg_A Protein (quinoprotein e 88.0 30 0.001 36.7 25.1 126 189-338 62-201 (582)
167 3nmd_A CGMP dependent protein 88.0 0.67 2.3E-05 34.0 4.4 45 510-554 22-66 (72)
168 3azo_A Aminopeptidase; POP fam 87.9 9.6 0.00033 40.8 16.0 149 211-390 217-376 (662)
169 3v9f_A Two-component system se 87.9 4.8 0.00016 44.5 13.8 148 195-383 505-656 (781)
170 3sfz_A APAF-1, apoptotic pepti 87.8 4.9 0.00017 46.9 14.5 147 195-385 972-1118(1249)
171 1erj_A Transcriptional repress 87.6 23 0.00079 34.9 19.1 106 255-386 134-241 (393)
172 2q6q_A Spindle POLE BODY compo 87.4 0.48 1.7E-05 33.7 3.2 54 505-558 8-61 (74)
173 3i2n_A WD repeat-containing pr 87.4 20 0.00068 34.1 16.7 152 196-386 31-202 (357)
174 3mmy_A MRNA export factor; mRN 87.3 16 0.00055 34.9 16.0 145 195-384 97-248 (368)
175 4gga_A P55CDC, cell division c 87.3 15 0.00052 36.6 16.3 105 195-333 158-262 (420)
176 2i1j_A Moesin; FERM, coiled-co 87.2 0.71 2.4E-05 49.2 6.2 70 36-106 113-202 (575)
177 2vdu_B TRNA (guanine-N(7)-)-me 87.2 27 0.00091 35.2 20.6 109 255-386 160-274 (450)
178 3k26_A Polycomb protein EED; W 87.2 21 0.0007 34.2 16.7 107 256-384 85-193 (366)
179 1nir_A Nitrite reductase; hemo 87.2 13 0.00043 39.2 16.0 108 271-385 345-460 (543)
180 3qh9_A Liprin-beta-2; coiled-c 86.4 1.3 4.6E-05 33.0 5.3 49 510-558 29-77 (81)
181 2bkl_A Prolyl endopeptidase; m 86.3 10 0.00034 41.2 15.1 179 194-390 78-268 (695)
182 1yr2_A Prolyl oligopeptidase; 86.3 14 0.00048 40.4 16.4 150 209-390 292-448 (741)
183 1wt6_A Myotonin-protein kinase 86.3 1.8 6.3E-05 32.2 6.0 35 520-554 37-71 (81)
184 3iz6_a 40S ribosomal protein R 86.2 27 0.00092 34.3 17.4 111 255-383 260-375 (380)
185 4emc_A Monopolin complex subun 86.2 1.3 4.4E-05 39.0 6.0 47 506-552 12-58 (190)
186 3k26_A Polycomb protein EED; W 86.2 19 0.00065 34.4 15.8 108 307-450 85-193 (366)
187 2pm9_A Protein WEB1, protein t 86.1 9.5 0.00032 37.6 13.8 110 255-388 78-202 (416)
188 3bg1_A Protein SEC13 homolog; 86.1 23 0.00077 33.7 16.1 112 195-338 24-143 (316)
189 3scy_A Hypothetical bacterial 86.0 26 0.00088 33.9 22.5 33 352-389 215-248 (361)
190 1vyh_C Platelet-activating fac 85.9 13 0.00044 37.2 14.8 107 255-386 119-226 (410)
191 2ece_A 462AA long hypothetical 85.9 33 0.0011 35.1 17.3 179 195-390 95-296 (462)
192 2xyi_A Probable histone-bindin 85.7 8.5 0.00029 38.8 13.3 65 309-384 196-264 (430)
193 1yr2_A Prolyl oligopeptidase; 85.7 13 0.00044 40.7 15.7 180 193-390 116-313 (741)
194 1yfq_A Cell cycle arrest prote 85.7 24 0.00083 33.4 16.2 145 195-382 67-224 (342)
195 1itv_A MMP9; adaptive molecula 85.6 20 0.00067 32.1 16.3 154 190-386 11-177 (195)
196 4aow_A Guanine nucleotide-bind 85.5 10 0.00035 36.0 13.3 146 197-384 186-338 (340)
197 2pbi_B Guanine nucleotide-bind 85.4 28 0.00097 33.8 19.4 106 255-385 209-317 (354)
198 3ju4_A Endo-N-acetylneuraminid 85.2 32 0.0011 34.3 22.1 186 241-450 279-515 (670)
199 2ecf_A Dipeptidyl peptidase IV 85.2 45 0.0015 35.9 22.0 110 272-389 263-374 (741)
200 3i2n_A WD repeat-containing pr 84.9 14 0.00048 35.3 14.1 105 255-384 179-292 (357)
201 1yfq_A Cell cycle arrest prote 84.8 26 0.0009 33.1 16.0 63 255-332 67-131 (342)
202 2pm7_B Protein transport prote 84.8 21 0.0007 33.6 15.0 63 256-333 67-133 (297)
203 2pm9_A Protein WEB1, protein t 84.8 24 0.00083 34.5 16.1 111 256-385 178-296 (416)
204 2ynn_A Coatomer subunit beta'; 84.3 28 0.00095 32.8 17.3 148 195-384 24-173 (304)
205 2pbi_B Guanine nucleotide-bind 84.2 32 0.0011 33.4 21.4 150 255-451 165-317 (354)
206 1wt6_A Myotonin-protein kinase 84.0 3.2 0.00011 31.0 6.4 35 523-557 26-60 (81)
207 1sq9_A Antiviral protein SKI8; 83.9 13 0.00046 36.2 13.6 110 250-383 20-157 (397)
208 2xyi_A Probable histone-bindin 83.8 7 0.00024 39.4 11.6 104 258-383 196-309 (430)
209 3au4_A Myosin-X; protein-prote 83.7 1.6 5.6E-05 46.4 6.9 71 36-107 335-452 (555)
210 3ott_A Two-component system se 83.5 11 0.00036 41.5 13.8 110 255-389 482-592 (758)
211 1gd2_E Transcription factor PA 83.4 2.3 7.7E-05 31.3 5.4 42 512-553 27-68 (70)
212 3fvz_A Peptidyl-glycine alpha- 83.3 33 0.0011 32.9 25.1 169 195-389 101-283 (329)
213 3odt_A Protein DOA1; ubiquitin 83.3 29 0.00099 32.2 17.8 144 194-381 27-172 (313)
214 1pby_B Quinohemoprotein amine 83.1 23 0.00078 33.4 14.6 144 211-387 11-167 (337)
215 3hrp_A Uncharacterized protein 82.9 41 0.0014 33.7 17.2 111 255-389 141-255 (409)
216 2aq5_A Coronin-1A; WD40 repeat 82.8 7.7 0.00026 38.5 11.3 114 255-387 93-211 (402)
217 3pe7_A Oligogalacturonate lyas 82.7 28 0.00095 33.8 15.4 112 271-389 167-279 (388)
218 3e5z_A Putative gluconolactona 82.7 31 0.0011 32.2 17.9 160 195-390 79-253 (296)
219 1flg_A Protein (quinoprotein e 82.5 37 0.0013 36.0 17.1 122 250-388 63-200 (582)
220 3dr2_A Exported gluconolactona 82.4 34 0.0012 32.3 15.6 166 195-390 96-274 (305)
221 2ad6_A Methanol dehydrogenase 82.3 53 0.0018 34.6 22.6 81 190-288 110-194 (571)
222 1qks_A Cytochrome CD1 nitrite 82.2 54 0.0018 34.6 20.1 69 322-398 319-389 (567)
223 1qks_A Cytochrome CD1 nitrite 82.1 43 0.0015 35.3 17.3 200 211-452 320-541 (567)
224 3oja_B Anopheles plasmodium-re 82.1 1.8 6E-05 46.4 6.5 38 521-558 544-581 (597)
225 3gre_A Serine/threonine-protei 82.1 42 0.0014 33.3 16.7 114 306-451 181-294 (437)
226 2jee_A YIIU; FTSZ, septum, coi 81.8 3.5 0.00012 31.0 5.9 22 533-554 53-74 (81)
227 1xfd_A DIP, dipeptidyl aminope 81.5 29 0.00099 37.3 16.2 111 212-340 38-151 (723)
228 2k48_A Nucleoprotein; viral pr 81.2 3.4 0.00012 32.3 5.9 27 510-536 38-64 (107)
229 1w6s_A Methanol dehydrogenase 81.1 37 0.0013 36.2 16.3 124 250-389 57-199 (599)
230 2vdu_B TRNA (guanine-N(7)-)-me 80.9 48 0.0017 33.2 17.9 67 196-286 210-276 (450)
231 3dr2_A Exported gluconolactona 80.6 39 0.0013 31.9 17.0 157 195-385 56-226 (305)
232 2hes_X YDR267CP; beta-propelle 80.5 18 0.00063 34.6 12.9 151 195-382 164-327 (330)
233 2ynn_A Coatomer subunit beta'; 80.3 29 0.00099 32.7 14.1 105 255-384 24-129 (304)
234 2fp8_A Strictosidine synthase; 80.0 42 0.0014 31.9 19.8 169 189-390 83-276 (322)
235 2ghs_A AGR_C_1268P; regucalcin 80.0 43 0.0015 32.0 18.7 112 255-389 60-174 (326)
236 3dm0_A Maltose-binding peripla 79.9 69 0.0024 34.3 19.5 110 255-386 441-553 (694)
237 1hjb_A Ccaat/enhancer binding 79.9 3.3 0.00011 31.8 5.4 24 534-557 42-65 (87)
238 1ic2_A Tropomyosin alpha chain 79.4 4.9 0.00017 30.4 6.3 32 523-554 36-67 (81)
239 2yy0_A C-MYC-binding protein; 79.2 2.5 8.5E-05 29.2 4.1 29 516-544 21-49 (53)
240 3mq7_A Bone marrow stromal ant 78.8 4.3 0.00015 32.5 5.8 39 515-553 72-110 (121)
241 4h5i_A Guanine nucleotide-exch 78.6 51 0.0017 32.1 20.8 147 211-386 157-303 (365)
242 1kv9_A Type II quinohemoprotei 78.5 24 0.00084 38.1 14.2 124 250-389 61-195 (668)
243 1su3_A Interstitial collagenas 78.4 56 0.0019 33.3 16.0 157 190-388 267-437 (450)
244 4b6x_A AVRRPS4, avirulence pro 78.3 2.8 9.6E-05 30.9 4.3 49 506-554 28-81 (90)
245 1uix_A RHO-associated kinase; 77.6 6.8 0.00023 28.6 6.1 43 515-557 5-47 (71)
246 3u1c_A Tropomyosin alpha-1 cha 77.6 3.6 0.00012 32.6 5.3 26 515-540 45-70 (101)
247 3ott_A Two-component system se 77.1 88 0.003 34.0 20.7 107 195-339 73-181 (758)
248 4d9s_A UVB-resistance protein 77.0 62 0.0021 32.3 15.9 19 349-367 286-304 (406)
249 1ic2_A Tropomyosin alpha chain 76.9 6.1 0.00021 29.9 6.2 41 516-556 36-76 (81)
250 1ci6_A Transcription factor AT 76.9 5.1 0.00018 28.7 5.4 28 524-551 26-53 (63)
251 3iuj_A Prolyl endopeptidase; h 76.9 85 0.0029 33.7 20.3 103 271-389 258-365 (693)
252 3o4h_A Acylamino-acid-releasin 76.4 57 0.002 34.0 16.2 110 195-336 121-231 (582)
253 2hes_X YDR267CP; beta-propelle 76.2 55 0.0019 31.2 19.2 160 191-389 20-190 (330)
254 3odt_A Protein DOA1; ubiquitin 76.0 49 0.0017 30.5 20.4 106 255-388 154-260 (313)
255 3c5m_A Oligogalacturonate lyas 75.7 59 0.002 31.3 20.5 64 322-390 167-232 (396)
256 4h22_A Leucine-rich repeat fli 75.6 2.2 7.7E-05 33.5 3.4 45 510-554 40-84 (103)
257 1qhu_A Protein (hemopexin); be 75.3 77 0.0026 32.4 17.8 59 255-333 158-216 (460)
258 3u59_A Tropomyosin beta chain; 75.2 4.6 0.00016 32.1 5.3 18 542-559 79-96 (101)
259 4fi5_A Nucleoprotein; structur 75.1 6.5 0.00022 31.2 5.9 27 510-536 25-51 (113)
260 2jee_A YIIU; FTSZ, septum, coi 75.1 6 0.0002 29.7 5.4 44 514-557 20-63 (81)
261 2eqb_B RAB guanine nucleotide 75.0 3.5 0.00012 32.2 4.3 34 522-555 27-60 (97)
262 2v4h_A NF-kappa-B essential mo 74.9 7.9 0.00027 30.8 6.4 22 537-558 85-106 (110)
263 3gre_A Serine/threonine-protei 74.8 68 0.0023 31.6 16.4 108 255-385 181-294 (437)
264 3ba0_A Macrophage metalloelast 74.7 69 0.0024 31.6 16.4 158 190-388 185-355 (365)
265 1pgu_A Actin interacting prote 74.6 83 0.0028 32.5 22.5 106 255-384 455-573 (615)
266 2w6a_A ARF GTPase-activating p 74.1 8.6 0.00029 26.6 5.5 38 511-548 24-61 (63)
267 2yy0_A C-MYC-binding protein; 74.1 4.3 0.00015 27.9 4.2 30 522-551 20-49 (53)
268 1t2k_D Cyclic-AMP-dependent tr 74.0 8.7 0.0003 27.2 6.0 32 524-555 25-56 (61)
269 1t2k_D Cyclic-AMP-dependent tr 73.9 8.9 0.0003 27.1 6.0 39 513-551 21-59 (61)
270 3bg1_A Protein SEC13 homolog; 73.8 54 0.0018 31.0 14.0 68 196-287 71-143 (316)
271 3lrv_A PRE-mRNA-splicing facto 73.8 64 0.0022 30.8 19.6 106 255-385 138-246 (343)
272 3no2_A Uncharacterized protein 73.7 59 0.002 30.4 20.4 185 195-450 4-196 (276)
273 3f3f_A Nucleoporin SEH1; struc 73.5 59 0.002 30.2 20.1 151 196-383 71-249 (351)
274 3f3f_A Nucleoporin SEH1; struc 73.4 59 0.002 30.2 20.8 107 195-333 22-144 (351)
275 2eqb_B RAB guanine nucleotide 73.2 8.7 0.0003 29.9 6.1 33 515-547 27-59 (97)
276 3iz6_a 40S ribosomal protein R 73.2 71 0.0024 31.1 22.7 110 255-386 217-332 (380)
277 3hrp_A Uncharacterized protein 73.1 78 0.0027 31.5 20.3 152 195-384 141-299 (409)
278 3c7x_A Matrix metalloproteinas 73.1 51 0.0017 29.3 15.5 154 190-385 10-177 (196)
279 2ic6_A Nucleocapsid protein; h 73.0 9 0.00031 28.5 5.9 27 510-536 8-34 (78)
280 3efg_A Protein SLYX homolog; x 73.0 12 0.00042 28.0 6.8 41 513-553 20-60 (78)
281 4dxa_B KREV interaction trappe 72.8 2 6.9E-05 42.1 3.2 70 35-105 127-221 (322)
282 1fmh_A General control protein 72.6 5.7 0.00019 22.9 3.7 25 525-549 5-29 (33)
283 3oyo_A Hemopexin fold protein 71.9 45 0.0015 30.4 12.1 106 254-382 69-197 (225)
284 3no2_A Uncharacterized protein 71.8 65 0.0022 30.0 21.2 152 192-389 44-203 (276)
285 2xbg_A YCF48-like protein; pho 71.8 72 0.0025 30.5 20.3 172 172-390 26-200 (327)
286 1yiq_A Quinohemoprotein alcoho 71.6 1.2E+02 0.0039 32.8 25.2 81 190-287 116-200 (689)
287 1gu4_A CAAT/enhancer binding p 71.4 10 0.00035 28.4 6.0 22 530-551 45-66 (78)
288 1nkp_B MAX protein, MYC proto- 71.0 8.5 0.00029 29.2 5.8 44 512-555 38-81 (83)
289 1ci6_A Transcription factor AT 71.0 13 0.00043 26.6 6.3 35 516-550 25-59 (63)
290 1gen_A Gelatinase A; hydrolase 70.6 62 0.0021 29.3 16.3 156 190-385 35-204 (218)
291 3iv1_A Tumor susceptibility ge 70.5 8.5 0.00029 28.7 5.3 43 516-558 34-76 (78)
292 2wt7_A Proto-oncogene protein 70.2 13 0.00045 26.5 6.3 34 515-548 24-57 (63)
293 3a7p_A Autophagy protein 16; c 70.2 4.6 0.00016 34.2 4.3 41 516-556 84-124 (152)
294 3k6s_A Integrin alpha-X; cell 69.9 1.1E+02 0.0038 35.1 17.2 162 244-409 332-511 (1095)
295 1gd2_E Transcription factor PA 69.8 10 0.00035 27.7 5.6 43 516-558 24-66 (70)
296 3m91_A Proteasome-associated A 69.7 12 0.00041 25.5 5.5 18 527-544 29-46 (51)
297 3m91_A Proteasome-associated A 69.5 16 0.00056 24.8 6.1 39 516-554 11-49 (51)
298 2ic9_A Nucleocapsid protein; h 69.3 11 0.00038 29.1 5.9 27 510-536 8-34 (96)
299 1jnm_A Proto-oncogene C-JUN; B 69.0 9 0.00031 27.2 5.2 35 523-557 24-58 (62)
300 1k32_A Tricorn protease; prote 69.0 73 0.0025 36.2 15.8 192 183-436 294-493 (1045)
301 4a5s_A Dipeptidyl peptidase 4 68.9 51 0.0017 35.8 13.9 69 211-288 36-108 (740)
302 3u1c_A Tropomyosin alpha-1 cha 68.9 11 0.00037 29.8 6.1 38 516-553 32-69 (101)
303 2fxo_A Myosin heavy chain, car 68.8 12 0.0004 31.1 6.6 41 518-558 87-127 (129)
304 2gop_A Trilobed protease; beta 68.8 80 0.0027 29.8 17.8 101 271-389 151-257 (347)
305 3o4h_A Acylamino-acid-releasin 68.6 50 0.0017 34.5 13.4 111 255-387 121-231 (582)
306 3vmx_A Voltage-gated hydrogen 68.5 21 0.00073 23.7 6.3 39 513-551 3-41 (48)
307 1itv_A MMP9; adaptive molecula 68.2 65 0.0022 28.6 14.2 109 250-385 11-129 (195)
308 1g6u_A Domain swapped dimer; d 67.6 20 0.00068 22.5 5.9 17 531-547 23-39 (48)
309 4e61_A Protein BIM1; EB1-like 67.1 9.1 0.00031 30.4 5.1 30 518-547 8-37 (106)
310 2ymu_A WD-40 repeat protein; u 67.0 1.2E+02 0.004 31.1 18.5 108 255-389 396-504 (577)
311 4d9s_A UVB-resistance protein 66.8 97 0.0033 30.8 14.5 19 349-367 338-356 (406)
312 3efg_A Protein SLYX homolog; x 66.4 11 0.00037 28.3 5.3 49 510-558 10-58 (78)
313 3i00_A HIP-I, huntingtin-inter 66.3 14 0.00046 30.3 6.3 17 514-530 15-31 (120)
314 3a2a_A Voltage-gated hydrogen 66.3 8.1 0.00028 26.3 4.0 37 515-551 12-48 (58)
315 2wt7_B Transcription factor MA 66.1 14 0.00047 28.5 5.9 39 516-554 50-88 (90)
316 1gmj_A ATPase inhibitor; coile 66.1 20 0.00068 27.0 6.6 30 527-556 50-79 (84)
317 1pex_A Collagenase-3, MMP-13; 65.5 77 0.0026 28.4 16.9 110 250-385 28-147 (207)
318 3ra3_B P2F; coiled coil domain 65.5 4.9 0.00017 22.3 2.3 21 535-555 7-27 (28)
319 3cve_A Homer protein homolog 1 65.2 20 0.0007 26.2 6.3 43 514-556 21-63 (72)
320 1lwu_C Fibrinogen gamma chain; 65.1 3.4 0.00012 40.2 2.9 35 515-549 20-54 (323)
321 1nlw_A MAD protein, MAX dimeri 64.9 14 0.00049 27.7 5.8 40 514-553 40-79 (80)
322 2wt7_A Proto-oncogene protein 64.9 18 0.00061 25.8 6.0 38 520-557 22-59 (63)
323 3kci_A Probable E3 ubiquitin-p 64.7 1.1E+02 0.0038 30.1 15.3 18 349-366 274-291 (389)
324 3mmy_A MRNA export factor; mRN 64.6 95 0.0032 29.2 21.1 104 196-334 54-162 (368)
325 1deb_A APC protein, adenomatou 64.5 14 0.00049 24.6 4.8 36 516-551 12-47 (54)
326 3a2a_A Voltage-gated hydrogen 64.3 20 0.00067 24.4 5.5 37 522-558 12-48 (58)
327 1nkp_B MAX protein, MYC proto- 64.1 6.7 0.00023 29.8 3.9 39 510-548 43-81 (83)
328 2w83_C C-JUN-amino-terminal ki 64.1 14 0.00048 27.2 5.2 41 518-558 34-74 (77)
329 3k6s_A Integrin alpha-X; cell 63.7 2.1E+02 0.0071 32.8 19.8 191 184-386 332-545 (1095)
330 1s1c_X RHO-associated, coiled- 63.6 17 0.00059 26.5 5.6 29 513-541 5-33 (71)
331 1npe_A Nidogen, entactin; glyc 63.6 88 0.003 28.5 24.3 196 189-452 39-241 (267)
332 1xfd_A DIP, dipeptidyl aminope 63.5 66 0.0023 34.4 13.4 76 195-288 71-150 (723)
333 1nkp_A C-MYC, MYC proto-oncoge 63.5 8.8 0.0003 29.5 4.5 40 515-554 46-85 (88)
334 1jnm_A Proto-oncogene C-JUN; B 63.4 9.2 0.00032 27.2 4.3 38 513-550 21-58 (62)
335 2fp8_A Strictosidine synthase; 63.4 88 0.003 29.5 13.1 111 272-389 40-180 (322)
336 2l5g_B Putative uncharacterize 63.3 8.7 0.0003 24.7 3.5 23 516-538 11-33 (42)
337 2xdj_A Uncharacterized protein 63.2 17 0.00058 27.6 5.8 26 521-546 27-52 (83)
338 3oja_B Anopheles plasmodium-re 63.1 8 0.00027 41.2 5.8 18 540-557 549-566 (597)
339 2dgc_A Protein (GCN4); basic d 62.9 19 0.00066 25.6 5.8 30 528-557 30-59 (63)
340 3ni0_A Bone marrow stromal ant 62.9 14 0.00049 28.3 5.3 38 516-553 48-85 (99)
341 1dh3_A Transcription factor CR 62.9 12 0.00041 25.9 4.6 31 521-551 22-52 (55)
342 4h22_A Leucine-rich repeat fli 62.7 14 0.00046 29.1 5.3 42 516-557 39-80 (103)
343 2al6_A Focal adhesion kinase 1 62.6 3.7 0.00013 41.2 2.7 68 38-106 131-224 (375)
344 4h5i_A Guanine nucleotide-exch 62.5 1.1E+02 0.0039 29.4 17.3 154 195-382 187-342 (365)
345 3cvf_A Homer-3, homer protein 62.5 23 0.00079 26.5 6.3 19 516-534 22-40 (79)
346 3u59_A Tropomyosin beta chain; 62.0 19 0.00065 28.4 6.3 10 518-527 48-57 (101)
347 2v4h_A NF-kappa-B essential mo 61.9 21 0.00073 28.3 6.3 30 517-546 27-56 (110)
348 3ni0_A Bone marrow stromal ant 61.9 26 0.0009 26.8 6.6 35 524-558 49-83 (99)
349 3t97_C Nuclear pore glycoprote 61.8 12 0.00042 26.8 4.6 49 510-558 8-56 (64)
350 1txp_A HnRNP C, heterogeneous 61.8 4.8 0.00016 23.2 1.9 23 532-554 3-25 (28)
351 3ci9_A Heat shock factor-bindi 60.6 27 0.00091 23.4 5.7 38 518-558 10-47 (48)
352 1t6f_A Geminin; coiled-coil, c 60.6 25 0.00084 21.6 4.9 25 523-547 9-33 (37)
353 1t6f_A Geminin; coiled-coil, c 60.5 13 0.00045 22.8 3.8 23 518-540 11-33 (37)
354 1d7m_A Cortexillin I; coiled-c 60.3 23 0.00078 26.8 5.9 38 516-553 20-57 (101)
355 3tnu_A Keratin, type I cytoske 60.1 17 0.00059 30.1 6.1 14 510-523 41-54 (131)
356 4ggc_A P55CDC, cell division c 59.8 1.1E+02 0.0037 28.2 18.7 136 211-384 45-182 (318)
357 3a7o_A Autophagy protein 16; c 59.7 9.1 0.00031 27.5 3.5 21 515-535 19-39 (75)
358 1wlq_A Geminin; coiled-coil; 2 59.6 12 0.0004 28.2 4.2 21 519-539 43-63 (83)
359 2pm7_B Protein transport prote 59.5 1.1E+02 0.0038 28.3 15.6 63 196-282 67-133 (297)
360 3c7x_A Matrix metalloproteinas 59.5 95 0.0032 27.5 13.5 112 250-385 10-129 (196)
361 1nkp_A C-MYC, MYC proto-oncoge 58.8 25 0.00084 27.0 6.2 39 510-548 48-86 (88)
362 1dh3_A Transcription factor CR 58.8 29 0.00098 23.9 6.0 33 526-558 20-52 (55)
363 1hjb_A Ccaat/enhancer binding 58.6 19 0.00066 27.5 5.5 28 527-554 42-69 (87)
364 2lw1_A ABC transporter ATP-bin 58.6 21 0.00071 27.4 5.8 23 509-531 24-46 (89)
365 3ghg_A Fibrinogen alpha chain; 58.3 8.3 0.00028 39.4 4.3 39 518-556 114-152 (562)
366 1zxa_A CGMP-dependent protein 58.0 9.9 0.00034 27.5 3.5 28 522-549 26-53 (67)
367 1uii_A Geminin; human, DNA rep 57.9 13 0.00044 27.9 4.2 17 535-551 46-62 (83)
368 3tnu_B Keratin, type II cytosk 57.8 19 0.00066 29.8 6.0 19 516-534 38-56 (129)
369 3vmx_A Voltage-gated hydrogen 57.8 17 0.00058 24.2 4.3 34 523-556 6-39 (48)
370 3gp4_A Transcriptional regulat 57.3 26 0.0009 29.5 6.8 44 514-557 81-124 (142)
371 3bas_A Myosin heavy chain, str 57.2 28 0.00095 26.7 6.3 40 516-555 44-83 (89)
372 1gmj_A ATPase inhibitor; coile 57.1 23 0.00078 26.7 5.5 23 534-556 50-72 (84)
373 2c5k_T Syntaxin TLG1, T-snare 57.1 9.8 0.00034 29.7 3.7 50 509-558 38-91 (95)
374 4fm3_A Uncharacterized hypothe 57.1 22 0.00075 27.8 5.6 43 516-558 52-94 (98)
375 3q0x_A Centriole protein; cent 57.0 23 0.00078 32.4 6.7 42 515-556 172-213 (228)
376 3azd_A Short alpha-tropomyosin 56.7 3.5 0.00012 26.1 0.8 28 524-551 7-34 (37)
377 3m9b_A Proteasome-associated A 56.7 11 0.00038 34.8 4.6 40 515-554 55-94 (251)
378 3b7f_A Glycosyl hydrolase, BNR 56.5 1.5E+02 0.0052 28.9 19.4 150 212-390 32-215 (394)
379 3lp9_A LS-24; SEED albumin, pl 55.8 13 0.00044 34.2 5.0 107 253-384 70-202 (227)
380 3sjl_D Methylamine dehydrogena 55.6 73 0.0025 31.8 10.9 73 306-388 291-368 (386)
381 3he5_B Synzip2; heterodimeric 55.4 38 0.0013 21.6 5.9 38 515-552 11-48 (52)
382 2lw1_A ABC transporter ATP-bin 55.4 14 0.00046 28.5 4.3 23 515-537 23-45 (89)
383 2zqm_A Prefoldin beta subunit 55.4 26 0.0009 28.1 6.4 46 510-555 66-111 (117)
384 3na7_A HP0958; flagellar bioge 55.3 14 0.00048 34.7 5.3 47 510-556 35-81 (256)
385 3he5_A Synzip1; heterodimeric 55.2 36 0.0012 21.4 6.7 44 515-558 4-47 (49)
386 2dgc_A Protein (GCN4); basic d 55.2 23 0.00079 25.2 5.1 34 519-552 28-61 (63)
387 1gk6_A Vimentin; intermediate 54.7 50 0.0017 23.1 6.8 31 510-540 3-33 (59)
388 1hxn_A Hemopexin, HPX; heme, b 54.6 58 0.002 29.6 9.2 106 194-332 27-144 (219)
389 1nlw_A MAD protein, MAX dimeri 54.6 13 0.00043 28.0 3.9 37 510-546 43-79 (80)
390 3i00_A HIP-I, huntingtin-inter 54.5 32 0.0011 28.0 6.5 25 512-536 38-62 (120)
391 2zdi_C Prefoldin subunit alpha 54.3 25 0.00087 29.9 6.3 42 516-557 100-141 (151)
392 3htk_A Structural maintenance 54.3 40 0.0014 23.4 6.3 41 516-556 14-54 (60)
393 2v66_B Nuclear distribution pr 54.2 27 0.00092 28.0 5.9 37 515-551 36-72 (111)
394 2p9w_A MAL S 1 allergenic prot 54.2 1.6E+02 0.0055 28.5 12.8 146 255-434 147-304 (334)
395 1gu4_A CAAT/enhancer binding p 54.0 26 0.00088 26.2 5.4 40 519-558 27-66 (78)
396 3oja_A Leucine-rich immune mol 53.8 7.1 0.00024 40.5 3.2 42 516-557 423-464 (487)
397 2qyw_A Vesicle transport throu 53.5 33 0.0011 27.0 6.4 49 511-559 46-102 (102)
398 3cvf_A Homer-3, homer protein 53.3 23 0.00079 26.5 5.0 48 510-557 23-70 (79)
399 1fxk_C Protein (prefoldin); ar 53.3 32 0.0011 28.4 6.7 43 514-556 88-130 (133)
400 3frx_A Guanine nucleotide-bind 53.1 1.5E+02 0.0051 27.8 16.3 105 255-386 76-188 (319)
401 3m9b_A Proteasome-associated A 52.8 11 0.00038 34.9 3.9 35 524-558 57-91 (251)
402 2akf_A Coronin-1A; coiled coil 52.8 19 0.00066 20.9 3.4 19 519-537 4-22 (32)
403 2lq4_p Lysophosphatidic acid r 52.7 1.7 5.9E-05 30.3 -1.1 18 542-559 13-30 (80)
404 3cve_A Homer protein homolog 1 52.5 29 0.00099 25.4 5.3 39 513-551 13-51 (72)
405 3iv1_A Tumor susceptibility ge 52.5 12 0.00042 27.8 3.3 46 510-555 21-66 (78)
406 2pnv_A Small conductance calci 52.4 14 0.00048 24.1 3.2 11 544-554 25-35 (43)
407 1npe_A Nidogen, entactin; glyc 51.8 1.4E+02 0.0048 27.1 21.5 156 189-388 82-243 (267)
408 2gop_A Trilobed protease; beta 51.5 1.6E+02 0.0054 27.6 16.0 145 208-389 40-213 (347)
409 3w03_C DNA repair protein XRCC 51.1 28 0.00095 30.7 6.0 42 511-552 142-183 (184)
410 4e61_A Protein BIM1; EB1-like 51.1 29 0.00099 27.5 5.5 16 516-531 20-35 (106)
411 2dfs_A Myosin-5A; myosin-V, in 51.0 9.1 0.00031 43.9 3.7 9 84-92 316-324 (1080)
412 2z5i_A TM, general control pro 50.6 31 0.0011 23.5 5.0 40 511-550 9-48 (52)
413 3tnu_A Keratin, type I cytoske 49.9 19 0.00065 29.9 4.7 24 509-532 47-70 (131)
414 3frx_A Guanine nucleotide-bind 49.7 1.7E+02 0.0057 27.4 17.4 145 195-385 76-229 (319)
415 2w83_C C-JUN-amino-terminal ki 49.7 22 0.00074 26.2 4.2 38 516-553 39-76 (77)
416 2xv5_A Lamin-A/C; structural p 49.5 34 0.0011 25.3 5.3 30 510-539 8-37 (74)
417 2v66_B Nuclear distribution pr 49.5 49 0.0017 26.5 6.7 35 523-557 37-71 (111)
418 2ymu_A WD-40 repeat protein; u 49.4 2.3E+02 0.0078 28.9 19.2 108 255-389 355-463 (577)
419 2dfs_A Myosin-5A; myosin-V, in 49.4 21 0.00071 41.0 6.3 6 198-203 558-563 (1080)
420 2mad_H Methylamine dehydrogena 49.3 2E+02 0.0067 28.1 14.7 130 250-396 219-364 (373)
421 1fxk_A Prefoldin; archaeal pro 49.3 35 0.0012 26.9 6.0 43 511-553 62-104 (107)
422 3a7p_A Autophagy protein 16; c 48.8 27 0.00092 29.5 5.3 26 516-541 98-123 (152)
423 3azd_A Short alpha-tropomyosin 48.7 14 0.00049 23.2 2.8 24 518-541 8-31 (37)
424 2p4o_A Hypothetical protein; p 48.6 1.7E+02 0.0059 27.2 19.2 150 195-383 82-242 (306)
425 2wuj_A Septum site-determining 48.4 22 0.00077 24.7 4.1 19 529-547 35-53 (57)
426 4emc_A Monopolin complex subun 47.9 27 0.00091 30.7 5.3 38 512-549 25-62 (190)
427 2xe4_A Oligopeptidase B; hydro 47.8 2.5E+02 0.0086 30.4 14.8 118 255-390 330-465 (751)
428 3bas_A Myosin heavy chain, str 47.6 56 0.0019 25.0 6.6 7 519-525 19-25 (89)
429 2xv5_A Lamin-A/C; structural p 47.5 39 0.0013 24.9 5.5 19 523-541 7-25 (74)
430 2v71_A Nuclear distribution pr 47.2 38 0.0013 29.9 6.3 20 521-540 49-68 (189)
431 3iyn_Q Protein IX, PIX, hexon- 47.2 29 0.00099 28.0 4.9 27 516-542 100-126 (140)
432 1gk4_A Vimentin; intermediate 46.9 37 0.0013 25.6 5.5 42 515-559 2-43 (84)
433 1kd8_A GABH AIV, GCN4 acid bas 46.8 25 0.00085 21.6 3.4 27 525-551 5-31 (36)
434 4ggc_A P55CDC, cell division c 46.4 1.7E+02 0.0059 26.7 18.9 54 323-385 221-275 (318)
435 1joc_A EEA1, early endosomal a 46.4 35 0.0012 28.0 5.7 17 516-532 20-36 (125)
436 1x8y_A Lamin A/C; structural p 46.4 44 0.0015 25.4 5.9 12 528-539 35-46 (86)
437 1fxk_C Protein (prefoldin); ar 46.4 38 0.0013 27.9 6.1 40 516-555 3-42 (133)
438 4eku_A Protein-tyrosine kinase 46.1 7.7 0.00026 39.0 1.9 69 38-107 151-245 (392)
439 3b7f_A Glycosyl hydrolase, BNR 46.1 2.2E+02 0.0075 27.7 18.7 186 172-390 44-269 (394)
440 3ghg_A Fibrinogen alpha chain; 46.0 27 0.00091 35.8 5.7 37 511-547 121-157 (562)
441 3jsv_C NF-kappa-B essential mo 45.9 56 0.0019 25.1 6.2 24 534-557 60-83 (94)
442 2oqq_A Transcription factor HY 45.9 57 0.0019 20.9 5.7 32 524-555 6-37 (42)
443 1l8d_A DNA double-strand break 45.8 38 0.0013 26.9 5.8 34 519-552 8-41 (112)
444 2l5g_B Putative uncharacterize 45.8 47 0.0016 21.3 4.8 29 528-556 9-37 (42)
445 3tnu_B Keratin, type II cytosk 45.2 25 0.00087 29.0 4.7 16 516-531 52-67 (129)
446 1zxa_A CGMP-dependent protein 45.1 38 0.0013 24.4 4.8 33 510-542 21-53 (67)
447 1z68_A Fibroblast activation p 45.1 1E+02 0.0036 32.9 11.1 209 199-455 29-297 (719)
448 2zqm_A Prefoldin beta subunit 45.0 42 0.0014 26.8 6.0 40 515-554 7-46 (117)
449 3viq_B Mating-type switching p 44.8 18 0.00063 27.4 3.3 24 512-535 6-29 (85)
450 3qh9_A Liprin-beta-2; coiled-c 44.4 73 0.0025 23.7 6.3 42 516-557 21-69 (81)
451 3c3g_A Alpha/beta peptide with 43.9 45 0.0015 20.1 4.1 24 525-548 4-27 (33)
452 1vcs_A Vesicle transport throu 43.9 53 0.0018 25.8 6.2 49 510-558 34-90 (102)
453 3ljm_A Coil Ser L9C; de novo d 43.7 34 0.0012 19.5 3.4 13 540-552 13-25 (31)
454 4b6x_A AVRRPS4, avirulence pro 43.5 80 0.0027 23.3 6.4 47 511-557 26-77 (90)
455 3swf_A CGMP-gated cation chann 43.4 95 0.0032 22.8 6.8 42 511-552 4-49 (74)
456 2fxo_A Myosin heavy chain, car 43.4 46 0.0016 27.4 6.0 13 546-558 108-120 (129)
457 1l8d_A DNA double-strand break 43.2 29 0.001 27.6 4.7 35 513-547 9-43 (112)
458 2wt7_B Transcription factor MA 43.1 36 0.0012 26.2 4.7 35 521-555 48-82 (90)
459 1jcd_A Major outer membrane li 42.3 79 0.0027 21.5 6.5 31 516-546 6-36 (52)
460 4dnd_A Syntaxin-10, SYN10; str 42.2 60 0.0021 26.8 6.5 49 511-559 71-129 (130)
461 3o0z_A RHO-associated protein 42.2 62 0.0021 27.9 6.6 37 515-551 98-134 (168)
462 1n7d_A LDL receptor, low-densi 42.1 3.5E+02 0.012 29.0 17.4 150 254-451 463-616 (699)
463 1m1j_C Fibrinogen gamma chain; 42.0 36 0.0012 34.2 6.0 39 516-554 86-124 (409)
464 1kd8_B GABH BLL, GCN4 acid bas 42.0 59 0.002 20.0 4.5 24 525-548 5-28 (36)
465 2wuj_A Septum site-determining 41.8 35 0.0012 23.7 4.2 31 513-543 26-56 (57)
466 1aq5_A Matrilin-1, CMP, cartil 41.7 31 0.0011 22.9 3.6 13 544-556 32-44 (47)
467 3uux_B Mitochondrial division 41.6 32 0.0011 31.5 4.9 48 508-555 178-225 (242)
468 2l5g_A GPS2 protein, G protein 41.5 54 0.0018 20.4 4.3 24 516-539 10-33 (38)
469 3c3f_A Alpha/beta peptide with 41.2 52 0.0018 19.9 4.1 25 524-548 4-28 (34)
470 3he4_A Synzip6; heterodimeric 41.0 58 0.002 21.1 4.7 22 536-557 32-53 (56)
471 3trt_A Vimentin; cytoskeleton, 41.0 59 0.002 23.9 5.8 22 537-558 51-72 (77)
472 3o0z_A RHO-associated protein 40.6 51 0.0017 28.5 5.9 36 522-557 98-133 (168)
473 3vp9_A General transcriptional 40.2 1.2E+02 0.0042 23.2 7.3 18 516-533 45-62 (92)
474 1jcd_A Major outer membrane li 40.2 51 0.0017 22.4 4.6 43 510-552 7-49 (52)
475 4ath_A MITF, microphthalmia-as 40.0 36 0.0012 25.7 4.2 39 515-557 40-78 (83)
476 3he5_A Synzip1; heterodimeric 39.9 69 0.0023 20.2 5.0 41 512-552 8-48 (49)
477 3jsv_C NF-kappa-B essential mo 39.9 47 0.0016 25.6 4.9 25 530-554 63-87 (94)
478 1i84_S Smooth muscle myosin he 39.7 29 0.001 40.3 5.7 8 84-91 342-349 (1184)
479 1ck7_A Protein (gelatinase A); 39.5 1.9E+02 0.0066 30.8 11.5 155 190-384 448-616 (631)
480 3c75_H MADH, methylamine dehyd 39.4 1.6E+02 0.0056 29.6 10.6 121 195-336 84-213 (426)
481 3twe_A Alpha4H; unknown functi 39.0 49 0.0017 18.2 3.5 16 518-533 5-20 (27)
482 3pvl_A Myosin VIIA isoform 1; 38.9 28 0.00097 37.5 5.1 70 37-106 385-476 (655)
483 3qne_A Seryl-tRNA synthetase, 38.7 21 0.0007 36.9 3.7 25 534-558 77-101 (485)
484 3tc9_A Hypothetical hydrolase; 38.5 3E+02 0.01 27.4 12.7 153 189-381 140-299 (430)
485 1fxk_A Prefoldin; archaeal pro 38.2 66 0.0023 25.1 6.1 37 518-554 5-41 (107)
486 2w6b_A RHO guanine nucleotide 38.1 93 0.0032 21.1 5.7 27 515-541 18-44 (56)
487 1deb_A APC protein, adenomatou 38.0 88 0.003 20.8 6.3 33 525-557 7-39 (54)
488 2zxx_A Geminin; coiled-coil, c 37.8 53 0.0018 24.5 4.8 24 518-541 38-61 (79)
489 2w6a_A ARF GTPase-activating p 37.8 1E+02 0.0034 21.4 6.5 38 518-555 17-54 (63)
490 1g6u_A Domain swapped dimer; d 37.7 51 0.0017 20.6 3.9 28 514-541 20-47 (48)
491 3vkg_A Dynein heavy chain, cyt 37.7 35 0.0012 43.7 6.2 50 510-559 2010-2059(3245)
492 1d7m_A Cortexillin I; coiled-c 37.7 1.3E+02 0.0043 22.8 6.8 48 511-558 1-48 (101)
493 4etp_A Kinesin-like protein KA 37.6 25 0.00085 35.4 4.1 51 505-555 8-58 (403)
494 2oiz_A Aromatic amine dehydrog 37.1 2.9E+02 0.0098 26.5 22.3 212 195-450 61-335 (361)
495 2xzr_A Immunoglobulin-binding 36.6 77 0.0026 24.3 5.6 46 509-554 43-88 (114)
496 3mq9_A Bone marrow stromal ant 36.3 53 0.0018 33.6 6.6 48 511-558 394-452 (471)
497 3s9g_A Protein hexim1; cyclin 36.2 94 0.0032 24.0 6.0 42 517-558 33-74 (104)
498 3htk_A Structural maintenance 36.2 70 0.0024 22.1 5.2 46 509-554 14-59 (60)
499 1uo4_A General control protein 36.1 45 0.0016 20.2 3.4 31 523-553 3-33 (34)
500 3mq9_A Bone marrow stromal ant 36.1 47 0.0016 33.9 6.2 43 514-556 429-471 (471)
No 1
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=100.00 E-value=2.8e-39 Score=325.20 Aligned_cols=248 Identities=17% Similarity=0.281 Sum_probs=220.6
Q ss_pred Ccceeccc----eEEecccCCCCCCcccceeEEEECCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCC
Q 008611 164 LGSVVVYD----QWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPS 239 (559)
Q Consensus 164 ~~~~~~~~----~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~ 239 (559)
...++.|| +|..++. +|.+|.+|++++++++|||+||.. ...++++++||+.+++|..+++
T Consensus 23 ~~~~~~~d~~~~~W~~~~~---~p~~r~~~~~~~~~~~lyv~GG~~-~~~~~~~~~~d~~~~~W~~~~~----------- 87 (306)
T 3ii7_A 23 PQSCRYFNPKDYSWTDIRC---PFEKRRDAACVFWDNVVYILGGSQ-LFPIKRMDCYNVVKDSWYSKLG----------- 87 (306)
T ss_dssp TTSEEEEETTTTEEEECCC---CSCCCBSCEEEEETTEEEEECCBS-SSBCCEEEEEETTTTEEEEEEC-----------
T ss_pred CceEEEecCCCCCEecCCC---CCcccceeEEEEECCEEEEEeCCC-CCCcceEEEEeCCCCeEEECCC-----------
Confidence 45666665 9999874 899999999999999999999987 7788999999999999999855
Q ss_pred CCCCCCCccceeEEeCCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCC
Q 008611 240 PALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKR 319 (559)
Q Consensus 240 ~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~ 319 (559)
+|.+|.+|+++.++++|||+||.+......+++++||+.+++|+.++ ++|.+|.+|+++.++++||||||.+...
T Consensus 88 --~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~ 162 (306)
T 3ii7_A 88 --PPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKP---SMLTQRCSHGMVEANGLIYVCGGSLGNN 162 (306)
T ss_dssp --CSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEECCEESCT
T ss_pred --CCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCC---CCcCCcceeEEEEECCEEEEECCCCCCC
Confidence 46899999999999999999999755577899999999999999996 6899999999999999999999986654
Q ss_pred C---CcCceEEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEeccCCCCCC
Q 008611 320 S---LLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIP 396 (559)
Q Consensus 320 ~---~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~~~~~~~p 396 (559)
. .++++++||+.+++|+.+.. +|.+|..|+++++ +++|||+||......++++++||+.+++|+.+ +.+|
T Consensus 163 ~~~~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~---~~~p 235 (306)
T 3ii7_A 163 VSGRVLNSCEVYDPATETWTELCP---MIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMV---SPMP 235 (306)
T ss_dssp TTCEECCCEEEEETTTTEEEEECC---CSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEEC---CCCS
T ss_pred CcccccceEEEeCCCCCeEEECCC---ccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEEC---CCCC
Confidence 3 27999999999999999974 5889999999998 56799999987777789999999999999999 4788
Q ss_pred CCccccEEEEECCceecceeeeeeccCCCcEEEEEcCcCCC-CcccEEEEeCCCcceecc
Q 008611 397 TPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNGR-YNNEVHVLKPSHKSTLSS 455 (559)
Q Consensus 397 ~~R~~hs~~~~~~~~~iG~s~~~~~~~~~~~l~v~GG~~~~-~~~~v~~~d~~~~~~~~~ 455 (559)
.+|.+|+++++++ .||+|||+++. ..+++++||+.++.|...
T Consensus 236 ~~r~~~~~~~~~~-----------------~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~ 278 (306)
T 3ii7_A 236 WKGVTVKCAAVGS-----------------IVYVLAGFQGVGRLGHILEYNTETDKWVAN 278 (306)
T ss_dssp CCBSCCEEEEETT-----------------EEEEEECBCSSSBCCEEEEEETTTTEEEEE
T ss_pred CCccceeEEEECC-----------------EEEEEeCcCCCeeeeeEEEEcCCCCeEEeC
Confidence 9999999999966 89999999765 778999999999977664
No 2
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=100.00 E-value=2.4e-39 Score=326.23 Aligned_cols=247 Identities=19% Similarity=0.283 Sum_probs=219.5
Q ss_pred Ccceeccc----eEEecccCCCCCCcccceeEEEECCEEEEEccC----CCCcccCcEEEEEcCCCeEEEeeeccccCCC
Q 008611 164 LGSVVVYD----QWIAPPISGQRPKARYEHGAAVVQDKMYIYGGN----HNGRYLSDMHILDLRSWAWSKIQAKAVAEST 235 (559)
Q Consensus 164 ~~~~~~~~----~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~----~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~ 235 (559)
++.+..|| +|..++ .+|.+|.+|++++++++|||+||. .+...++++++||+.+++|+.+++
T Consensus 38 ~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~------- 107 (308)
T 1zgk_A 38 LSYLEAYNPSNGTWLRLA---DLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAP------- 107 (308)
T ss_dssp CCCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCC-------
T ss_pred cceEEEEcCCCCeEeECC---CCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCC-------
Confidence 45566664 999997 489999999999999999999997 556778999999999999999854
Q ss_pred CCCCCCCCCCCccceeEEeCCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCc
Q 008611 236 ESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGE 315 (559)
Q Consensus 236 ~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~ 315 (559)
+|.+|.+|+++.++++|||+||.... ...+++++||+.+++|+.++ ++|.+|.+|+++.++++||||||.
T Consensus 108 ------~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~ 177 (308)
T 1zgk_A 108 ------MSVPRNRIGVGVIDGHIYAVGGSHGC-IHHNSVERYEPERDEWHLVA---PMLTRRIGVGVAVLNRLLYAVGGF 177 (308)
T ss_dssp ------CSSCCBTCEEEEETTEEEEECCEETT-EECCCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEECCB
T ss_pred ------CCcCccccEEEEECCEEEEEcCCCCC-cccccEEEECCCCCeEeECC---CCCccccceEEEEECCEEEEEeCC
Confidence 46899999999999999999998764 56789999999999999997 689999999999999999999999
Q ss_pred CCCCCCcCceEEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEeccCCCCC
Q 008611 316 DAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEI 395 (559)
Q Consensus 316 ~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~~~~~~~ 395 (559)
+.... ++++++||+.+++|+.+.. +|.+|..|+++++ ++.|||+||......++++++||+.+++|..+. .+
T Consensus 178 ~~~~~-~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~---~~ 249 (308)
T 1zgk_A 178 DGTNR-LNSAECYYPERNEWRMITA---MNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVA---PM 249 (308)
T ss_dssp CSSCB-CCCEEEEETTTTEEEECCC---CSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECC---CC
T ss_pred CCCCc-CceEEEEeCCCCeEeeCCC---CCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcEEECC---CC
Confidence 76654 8999999999999999864 5889999999988 667999999887777899999999999999984 78
Q ss_pred CCCccccEEEEECCceecceeeeeeccCCCcEEEEEcCcCCC-CcccEEEEeCCCcceecc
Q 008611 396 PTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNGR-YNNEVHVLKPSHKSTLSS 455 (559)
Q Consensus 396 p~~R~~hs~~~~~~~~~iG~s~~~~~~~~~~~l~v~GG~~~~-~~~~v~~~d~~~~~~~~~ 455 (559)
|.+|.+|+++++++ .||+|||+++. ..+++++||+.++.|...
T Consensus 250 p~~r~~~~~~~~~~-----------------~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 293 (308)
T 1zgk_A 250 KHRRSALGITVHQG-----------------RIYVLGGYDGHTFLDSVECYDPDTDTWSEV 293 (308)
T ss_dssp SSCCBSCEEEEETT-----------------EEEEECCBCSSCBCCEEEEEETTTTEEEEE
T ss_pred CCCccceEEEEECC-----------------EEEEEcCcCCCcccceEEEEcCCCCEEeec
Confidence 89999999999866 99999998765 678999999999988654
No 3
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=100.00 E-value=5e-39 Score=322.73 Aligned_cols=249 Identities=18% Similarity=0.309 Sum_probs=220.3
Q ss_pred Ccceeccc----eEEecccCCCCCCcccceeEEEECCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCC
Q 008611 164 LGSVVVYD----QWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPS 239 (559)
Q Consensus 164 ~~~~~~~~----~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~ 239 (559)
++.+..|| +|..++ .+|.+|.+|++++++++|||+||..+...++++++||+.+++|+.+++
T Consensus 29 ~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~----------- 94 (302)
T 2xn4_A 29 IRSVECYDFKEERWHQVA---ELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN----------- 94 (302)
T ss_dssp CCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECC-----------
T ss_pred CCcEEEEcCcCCcEeEcc---cCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCC-----------
Confidence 34556664 999987 489999999999999999999998877888999999999999999954
Q ss_pred CCCCCCCccceeEEeCCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCC
Q 008611 240 PALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKR 319 (559)
Q Consensus 240 ~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~ 319 (559)
+|.+|.+|+++.++++|||+||.... ...+++++||+.+++|+.++ ++|.+|.+|+++.++++||||||.+...
T Consensus 95 --~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~ 168 (302)
T 2xn4_A 95 --MRDRRSTLGAAVLNGLLYAVGGFDGS-TGLSSVEAYNIKSNEWFHVA---PMNTRRSSVGVGVVGGLLYAVGGYDVAS 168 (302)
T ss_dssp --CSSCCBSCEEEEETTEEEEEEEECSS-CEEEEEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEECCEETTT
T ss_pred --CCccccceEEEEECCEEEEEcCCCCC-ccCceEEEEeCCCCeEeecC---CCCCcccCceEEEECCEEEEEeCCCCCC
Confidence 46899999999999999999998754 56789999999999999997 6899999999999999999999986654
Q ss_pred -CCcCceEEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEeccCCCCCCCC
Q 008611 320 -SLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTP 398 (559)
Q Consensus 320 -~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~~~~~~~p~~ 398 (559)
..++++++||+.+++|+.+.. +|.+|..|+++++ ++.|||+||.+.....+++++||+.+++|..+. .+|.+
T Consensus 169 ~~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~---~~~~~ 241 (302)
T 2xn4_A 169 RQCLSTVECYNATTNEWTYIAE---MSTRRSGAGVGVL-NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVA---DMNMC 241 (302)
T ss_dssp TEECCCEEEEETTTTEEEEECC---CSSCCBSCEEEEE-TTEEEEECCBSSSSBCCCEEEEETTTTEEEEEC---CCSSC
T ss_pred CccccEEEEEeCCCCcEEECCC---CccccccccEEEE-CCEEEEECCCCCCcccceEEEEeCCCCCEeeCC---CCCCc
Confidence 357899999999999999964 5899999999888 567999999887777899999999999999994 77899
Q ss_pred ccccEEEEECCceecceeeeeeccCCCcEEEEEcCcCCC-CcccEEEEeCCCcceeccc
Q 008611 399 RAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNGR-YNNEVHVLKPSHKSTLSSK 456 (559)
Q Consensus 399 R~~hs~~~~~~~~~iG~s~~~~~~~~~~~l~v~GG~~~~-~~~~v~~~d~~~~~~~~~~ 456 (559)
|.+|+++++++ .||+|||.++. ..+++++||+.++.|...+
T Consensus 242 r~~~~~~~~~~-----------------~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 283 (302)
T 2xn4_A 242 RRNAGVCAVNG-----------------LLYVVGGDDGSCNLASVEYYNPTTDKWTVVS 283 (302)
T ss_dssp CBSCEEEEETT-----------------EEEEECCBCSSSBCCCEEEEETTTTEEEECS
T ss_pred cccCeEEEECC-----------------EEEEECCcCCCcccccEEEEcCCCCeEEECC
Confidence 99999999866 89999998765 5789999999999887654
No 4
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=100.00 E-value=3.2e-38 Score=316.64 Aligned_cols=247 Identities=19% Similarity=0.343 Sum_probs=219.3
Q ss_pred Ccceeccc----eEEecccCCCCCCcccceeEEEECCEEEEEccCCCCcccCcEEEEEcCCCe---EEEeeeccccCCCC
Q 008611 164 LGSVVVYD----QWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWA---WSKIQAKAVAESTE 236 (559)
Q Consensus 164 ~~~~~~~~----~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~---W~~~~~~~~~~~~~ 236 (559)
.+.+..|| +|..++. +|.+|.+|++++++++|||+||..+...++++++||+.+++ |+.+++
T Consensus 30 ~~~~~~~d~~~~~W~~~~~---~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~-------- 98 (301)
T 2vpj_A 30 IDVVEKYDPKTQEWSFLPS---ITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAP-------- 98 (301)
T ss_dssp CCCEEEEETTTTEEEECCC---CSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECC--------
T ss_pred eeEEEEEcCCCCeEEeCCC---CChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCC--------
Confidence 44566664 9999884 88899999999999999999998877888999999999999 999954
Q ss_pred CCCCCCCCCCccceeEEeCCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCcC
Q 008611 237 SPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGED 316 (559)
Q Consensus 237 ~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~ 316 (559)
+|.+|.+|+++.++++||++||.... ...+++++||+.+++|+.++ ++|.+|.+|++++++++||++||.+
T Consensus 99 -----~p~~r~~~~~~~~~~~lyv~GG~~~~-~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~ 169 (301)
T 2vpj_A 99 -----MNVRRGLAGATTLGDMIYVSGGFDGS-RRHTSMERYDPNIDQWSMLG---DMQTAREGAGLVVASGVIYCLGGYD 169 (301)
T ss_dssp -----CSSCCBSCEEEEETTEEEEECCBCSS-CBCCEEEEEETTTTEEEEEE---ECSSCCBSCEEEEETTEEEEECCBC
T ss_pred -----CCCCccceeEEEECCEEEEEcccCCC-cccceEEEEcCCCCeEEECC---CCCCCcccceEEEECCEEEEECCCC
Confidence 47899999999999999999999755 56889999999999999997 5789999999999999999999987
Q ss_pred CCCCCcCceEEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEeccCCCCCC
Q 008611 317 AKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIP 396 (559)
Q Consensus 317 ~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~~~~~~~p 396 (559)
... .++++++||+.+++|+.+.. +|.+|..|+++++ +++|||+||.+....++++++||+.+++|..+ +.+|
T Consensus 170 ~~~-~~~~~~~~d~~~~~W~~~~~---~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~---~~~p 241 (301)
T 2vpj_A 170 GLN-ILNSVEKYDPHTGHWTNVTP---MATKRSGAGVALL-NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTV---TSMT 241 (301)
T ss_dssp SSC-BCCCEEEEETTTTEEEEECC---CSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEEE---CCCS
T ss_pred CCc-ccceEEEEeCCCCcEEeCCC---CCcccccceEEEE-CCEEEEEeCCCCCcccceEEEEeCCCCcEEEC---CCCC
Confidence 654 58999999999999999964 5899999999988 56799999988777789999999999999999 4788
Q ss_pred CCccccEEEEECCceecceeeeeeccCCCcEEEEEcCcCCC-CcccEEEEeCCCcceecc
Q 008611 397 TPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNGR-YNNEVHVLKPSHKSTLSS 455 (559)
Q Consensus 397 ~~R~~hs~~~~~~~~~iG~s~~~~~~~~~~~l~v~GG~~~~-~~~~v~~~d~~~~~~~~~ 455 (559)
.+|.+|+++++++ .||++||+++. ..+++++||++++.|...
T Consensus 242 ~~r~~~~~~~~~~-----------------~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 284 (301)
T 2vpj_A 242 TPRCYVGATVLRG-----------------RLYAIAGYDGNSLLSSIECYDPIIDSWEVV 284 (301)
T ss_dssp SCCBSCEEEEETT-----------------EEEEECCBCSSSBEEEEEEEETTTTEEEEE
T ss_pred CcccceeEEEECC-----------------EEEEEcCcCCCcccccEEEEcCCCCeEEEc
Confidence 9999999999866 89999998765 568999999999988654
No 5
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=100.00 E-value=9.4e-39 Score=322.87 Aligned_cols=249 Identities=17% Similarity=0.283 Sum_probs=214.7
Q ss_pred cceeccc----eEEecccCCCCCCcccceeEEEECCEEEEEccCC------CCcccCcEEEEEcCCCeEEEeeeccccCC
Q 008611 165 GSVVVYD----QWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNH------NGRYLSDMHILDLRSWAWSKIQAKAVAES 234 (559)
Q Consensus 165 ~~~~~~~----~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~------~~~~~~~v~~yd~~t~~W~~~~~~~~~~~ 234 (559)
..+..|| +|...+. +.|.+|.+|++++++++|||+||.. .....+++++||+.+++|+.+++
T Consensus 13 ~~~~~yd~~~~~W~~~~~--~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~------ 84 (315)
T 4asc_A 13 EGAVAYDPAANECYCASL--SSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP------ 84 (315)
T ss_dssp TEEEEEETTTTEEEEEEC--CCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC------
T ss_pred CceEEECCCCCeEecCCC--CCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC------
Confidence 5666675 9987331 3477999999999999999999952 22345679999999999998854
Q ss_pred CCCCCCCCCCCCccceeEEeCCEEEEEeccCC--CCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEECCEEEEE
Q 008611 235 TESPSPALLTPCAGHSLIPWENKLLSIAGHTK--DPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIF 312 (559)
Q Consensus 235 ~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~--~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~ 312 (559)
+|.+|.+|+++.++++|||+||... .....+++++||+.+++|+.++ ++|.+|.+|+++.++++||||
T Consensus 85 -------~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~ 154 (315)
T 4asc_A 85 -------LPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESD---PLPYVVYGHTVLSHMDLVYVI 154 (315)
T ss_dssp -------BSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEE
T ss_pred -------CCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECC---CCCCcccceeEEEECCEEEEE
Confidence 4789999999999999999999763 3467899999999999999997 689999999999999999999
Q ss_pred cCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEeccCC
Q 008611 313 GGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQ 392 (559)
Q Consensus 313 GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~~~~ 392 (559)
||.+.....++++++||+.+++|+.++. +|.+|..|+++++ +++|||+||......++++++||+.+++|+.+
T Consensus 155 GG~~~~~~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~--- 227 (315)
T 4asc_A 155 GGKGSDRKCLNKMCVYDPKKFEWKELAP---MQTARSLFGATVH-DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPF--- 227 (315)
T ss_dssp CCBCTTSCBCCCEEEEETTTTEEEECCC---CSSCCBSCEEEEE-TTEEEEEEEECSSSEEEEEEEEETTTTEEEEE---
T ss_pred eCCCCCCcccceEEEEeCCCCeEEECCC---CCCchhceEEEEE-CCEEEEEeccCCCCccceEEEEECCCCeEEEC---
Confidence 9996555678999999999999999874 4889999999988 56799999988777789999999999999999
Q ss_pred CCCCCCccccEEEEECCceecceeeeeeccCCCcEEEEEcCcCC----------CCcccEEEEeCCCcceecc
Q 008611 393 GEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNG----------RYNNEVHVLKPSHKSTLSS 455 (559)
Q Consensus 393 ~~~p~~R~~hs~~~~~~~~~iG~s~~~~~~~~~~~l~v~GG~~~----------~~~~~v~~~d~~~~~~~~~ 455 (559)
+.+|.+|.+|+++++++ +||+|||.++ ...+++++||+.++.|...
T Consensus 228 ~~~p~~r~~~~~~~~~~-----------------~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 228 EAFPQERSSLSLVSLVG-----------------TLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp CCCSSCCBSCEEEEETT-----------------EEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred CCCCCcccceeEEEECC-----------------EEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 46899999999999966 9999999853 2468999999999988766
No 6
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=100.00 E-value=5.4e-38 Score=317.72 Aligned_cols=255 Identities=20% Similarity=0.328 Sum_probs=216.0
Q ss_pred ceeccCcceeccc----eEEecccCCCCCCcccceeEEEECCEEEEEccCCC---C---cccCcEEEEEcCCCeEEEeee
Q 008611 159 VVSEGLGSVVVYD----QWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNHN---G---RYLSDMHILDLRSWAWSKIQA 228 (559)
Q Consensus 159 ~~~~~~~~~~~~~----~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~---~---~~~~~v~~yd~~t~~W~~~~~ 228 (559)
++..+-..+..|| +|...+. ..|.+|.+|++++++++|||+||... + ...+++++||+.+++|..+++
T Consensus 18 i~~~GG~~~~~yd~~~~~W~~~~~--~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 95 (318)
T 2woz_A 18 ILLVNDTAAVAYDPMENECYLTAL--AEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP 95 (318)
T ss_dssp EEEECSSEEEEEETTTTEEEEEEE--CTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC
T ss_pred hhhccccceEEECCCCCceecccC--CccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC
Confidence 3333334466664 9998442 35688999999999999999999531 1 233569999999999999854
Q ss_pred ccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCC-CCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEECC
Q 008611 229 KAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTK-DPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGT 307 (559)
Q Consensus 229 ~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~-~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~ 307 (559)
+|.+|.+|+++.++++|||+||... .....+++++||+.+++|+.++ ++|.+|.+|+++++++
T Consensus 96 -------------~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~ 159 (318)
T 2woz_A 96 -------------LPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVK---NLPIKVYGHNVISHNG 159 (318)
T ss_dssp -------------BSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEEC---CCSSCEESCEEEEETT
T ss_pred -------------CCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECC---CCCCcccccEEEEECC
Confidence 4789999999999999999999874 3467899999999999999997 6899999999999999
Q ss_pred EEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeE
Q 008611 308 SLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWS 387 (559)
Q Consensus 308 ~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~ 387 (559)
+||||||.+.....++++++||+.+++|+.++. +|.+|..|+++++ +++|||+||......++++++||+.+++|+
T Consensus 160 ~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 235 (318)
T 2woz_A 160 MIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAP---MKTPRSMFGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNKWE 235 (318)
T ss_dssp EEEEECCEESSSCBCCCEEEEETTTTEEEEECC---CSSCCBSCEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCCEE
T ss_pred EEEEEcCCCCCCCccceEEEEcCCCCEEEECCC---CCCCcccceEEEE-CCEEEEEcCcCCCCccceEEEEECCCCeEE
Confidence 999999986665578999999999999999964 4899999999887 567999999877777889999999999999
Q ss_pred eccCCCCCCCCccccEEEEECCceecceeeeeeccCCCcEEEEEcCcCC----------CCcccEEEEeCCCcceecc
Q 008611 388 RPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNG----------RYNNEVHVLKPSHKSTLSS 455 (559)
Q Consensus 388 ~~~~~~~~p~~R~~hs~~~~~~~~~iG~s~~~~~~~~~~~l~v~GG~~~----------~~~~~v~~~d~~~~~~~~~ 455 (559)
.+ +.+|.+|.+|+++++++ .||+|||.+. ...+++++||+.++.|...
T Consensus 236 ~~---~~~p~~r~~~~~~~~~~-----------------~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 236 VM---TEFPQERSSISLVSLAG-----------------SLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp EC---CCCSSCCBSCEEEEETT-----------------EEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred EC---CCCCCcccceEEEEECC-----------------EEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 98 47889999999999866 9999999864 2468999999999988776
No 7
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=100.00 E-value=2.2e-36 Score=304.49 Aligned_cols=235 Identities=19% Similarity=0.243 Sum_probs=198.4
Q ss_pred CCCCCcccceeEEEECCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEE
Q 008611 180 GQRPKARYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLL 259 (559)
Q Consensus 180 g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~ly 259 (559)
+..|.+|..|+++.+++.||+|||. .+..++++++||+.+++|..++. +|.+|.+|+++.++++||
T Consensus 9 ~~~~~~~~~~~~~~~~~~i~v~GG~-~~~~~~~~~~~d~~~~~W~~~~~-------------~p~~r~~~~~~~~~~~ly 74 (308)
T 1zgk_A 9 HSSGLVPRGSHAPKVGRLIYTAGGY-FRQSLSYLEAYNPSNGTWLRLAD-------------LQVPRSGLAGCVVGGLLY 74 (308)
T ss_dssp ------------CCCCCCEEEECCB-SSSBCCCEEEEETTTTEEEECCC-------------CSSCCBSCEEEEETTEEE
T ss_pred ccCCeeeCCccccCCCCEEEEEeCc-CCCCcceEEEEcCCCCeEeECCC-------------CCcccccceEEEECCEEE
Confidence 3578899999999999999999998 56788999999999999999854 478999999999999999
Q ss_pred EEeccC---CCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCCceE
Q 008611 260 SIAGHT---KDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWD 336 (559)
Q Consensus 260 v~GG~~---~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~ 336 (559)
||||.. ......+++++||+.+++|+.++ ++|.+|..|+++.++++||||||.+... .++++++||+.+++|+
T Consensus 75 v~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~W~ 150 (308)
T 1zgk_A 75 AVGGRNNSPDGNTDSSALDCYNPMTNQWSPCA---PMSVPRNRIGVGVIDGHIYAVGGSHGCI-HHNSVERYEPERDEWH 150 (308)
T ss_dssp EECCEEEETTEEEECCCEEEEETTTTEEEECC---CCSSCCBTCEEEEETTEEEEECCEETTE-ECCCEEEEETTTTEEE
T ss_pred EECCCcCCCCCCeecceEEEECCCCCeEeECC---CCCcCccccEEEEECCEEEEEcCCCCCc-ccccEEEECCCCCeEe
Confidence 999984 23356789999999999999997 6899999999999999999999987654 4789999999999999
Q ss_pred EecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEeccCCCCCCCCccccEEEEECCceeccee
Q 008611 337 EIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLS 416 (559)
Q Consensus 337 ~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~~~~~~~p~~R~~hs~~~~~~~~~iG~s 416 (559)
.+.. +|.+|..|+++++ +++|||+||......++++++||+.+++|..+ +.+|.+|.+|+++++++
T Consensus 151 ~~~~---~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~---~~~p~~r~~~~~~~~~~------- 216 (308)
T 1zgk_A 151 LVAP---MLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERNEWRMI---TAMNTIRSGAGVCVLHN------- 216 (308)
T ss_dssp ECCC---CSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEEC---CCCSSCCBSCEEEEETT-------
T ss_pred ECCC---CCccccceEEEEE-CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeC---CCCCCccccceEEEECC-------
Confidence 9864 4899999999998 66799999988777789999999999999998 47889999999999866
Q ss_pred eeeeccCCCcEEEEEcCcCCC-CcccEEEEeCCCcceeccc
Q 008611 417 LVVSSYSGEDVIVAFGGYNGR-YNNEVHVLKPSHKSTLSSK 456 (559)
Q Consensus 417 ~~~~~~~~~~~l~v~GG~~~~-~~~~v~~~d~~~~~~~~~~ 456 (559)
.||+|||.++. ..+++++||+.++.|....
T Consensus 217 ----------~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 247 (308)
T 1zgk_A 217 ----------CIYAAGGYDGQDQLNSVERYDVETETWTFVA 247 (308)
T ss_dssp ----------EEEEECCBCSSSBCCCEEEEETTTTEEEECC
T ss_pred ----------EEEEEeCCCCCCccceEEEEeCCCCcEEECC
Confidence 89999999764 5789999999999887654
No 8
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=100.00 E-value=2.7e-36 Score=310.13 Aligned_cols=246 Identities=18% Similarity=0.314 Sum_probs=199.1
Q ss_pred ceEEecccCCCCC-CcccceeEEEECCEEEEEccC-C----CCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCC
Q 008611 171 DQWIAPPISGQRP-KARYEHGAAVVQDKMYIYGGN-H----NGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLT 244 (559)
Q Consensus 171 ~~W~~~~~~g~~p-~~r~~~~~~~~~~~lyv~GG~-~----~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~ 244 (559)
++|..+++ +| .+|.+|++++++++|||+||. . ....++++++||+.+++|+.++++. |.
T Consensus 43 ~~W~~~~~---~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~------------p~ 107 (357)
T 2uvk_A 43 KKWTALAA---FPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHA------------PM 107 (357)
T ss_dssp CCEEECCC---CTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCC------------SS
T ss_pred CCeeECCC---CCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCC------------Cc
Confidence 48999985 78 899999999999999999997 2 2357899999999999999997652 68
Q ss_pred CCccceeEEeCCEEEEEeccCCCC---------------------------------CCcceEEEEECCCCeEEEeccCC
Q 008611 245 PCAGHSLIPWENKLLSIAGHTKDP---------------------------------SEIIQVKVFDLQTCSWSTLKTYG 291 (559)
Q Consensus 245 ~r~~~~~~~~~~~lyv~GG~~~~~---------------------------------~~~~~v~~yd~~t~~W~~~~~~g 291 (559)
+|.+|+++.++++||||||..... ..++++++||+.+++|+.+.
T Consensus 108 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~--- 184 (357)
T 2uvk_A 108 GMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAG--- 184 (357)
T ss_dssp CCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEE---
T ss_pred ccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECC---
Confidence 999999999999999999986431 24689999999999999996
Q ss_pred CCCCCc-cceEEEEECCEEEEEcCcCCCCCCcCceEEEEC--CCCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCC
Q 008611 292 KPPVSR-GGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDL--ETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGS 368 (559)
Q Consensus 292 ~~p~~r-~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~--~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~ 368 (559)
++|.+| .+|++++++++||||||.+......+++++||+ .+++|+.+..+ ..|.+|..|+++++ +++|||+||..
T Consensus 185 ~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~-~~~~~~~~~~~~~~-~~~iyv~GG~~ 262 (357)
T 2uvk_A 185 ESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPV-SSPDGVAGGFAGIS-NDSLIFAGGAG 262 (357)
T ss_dssp ECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCS-STTTCCBSCEEEEE-TTEEEEECCEE
T ss_pred CCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCC-CCCcccccceEEEE-CCEEEEEcCcc
Confidence 567655 459999999999999998765556789999987 89999999765 33555778888887 56799999953
Q ss_pred C-----------------CCCcCceEEEECCCCeeEeccCCCCCCCCccccEEEEECCceecceeeeeeccCCCcEEEEE
Q 008611 369 H-----------------AACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAF 431 (559)
Q Consensus 369 ~-----------------~~~~~dv~~~d~~~~~W~~~~~~~~~p~~R~~hs~~~~~~~~~iG~s~~~~~~~~~~~l~v~ 431 (559)
. ...++++++||+.+++|+.+ +.+|.+|.+|+++++++ .||||
T Consensus 263 ~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~---~~~p~~r~~~~~~~~~~-----------------~i~v~ 322 (357)
T 2uvk_A 263 FKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKS---GELSQGRAYGVSLPWNN-----------------SLLII 322 (357)
T ss_dssp CTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEE---EECSSCCBSSEEEEETT-----------------EEEEE
T ss_pred ccCCcccccccceeccccccceeeEEEEecCCCceeeC---CCCCCCcccceeEEeCC-----------------EEEEE
Confidence 2 22346899999999999998 47889999999999866 99999
Q ss_pred cCcCCC--CcccEEEEeCCCcceeccc
Q 008611 432 GGYNGR--YNNEVHVLKPSHKSTLSSK 456 (559)
Q Consensus 432 GG~~~~--~~~~v~~~d~~~~~~~~~~ 456 (559)
||+++. ..++|++|+..++.|....
T Consensus 323 GG~~~~~~~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 323 GGETAGGKAVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp EEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred eeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence 998754 4789999999999776543
No 9
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=100.00 E-value=2.7e-34 Score=288.82 Aligned_cols=217 Identities=18% Similarity=0.294 Sum_probs=192.7
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCCCCCcceE
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQV 274 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v 274 (559)
.+.||++||... ++++++||+.+++|..+++ +|.+|.+|+++.++++||||||.. ....+++
T Consensus 11 ~~~l~~~GG~~~---~~~~~~~d~~~~~W~~~~~-------------~p~~r~~~~~~~~~~~lyv~GG~~--~~~~~~~ 72 (306)
T 3ii7_A 11 HDYRIALFGGSQ---PQSCRYFNPKDYSWTDIRC-------------PFEKRRDAACVFWDNVVYILGGSQ--LFPIKRM 72 (306)
T ss_dssp CCEEEEEECCSS---TTSEEEEETTTTEEEECCC-------------CSCCCBSCEEEEETTEEEEECCBS--SSBCCEE
T ss_pred cceEEEEeCCCC---CceEEEecCCCCCEecCCC-------------CCcccceeEEEEECCEEEEEeCCC--CCCcceE
Confidence 489999999655 7999999999999999854 468999999999999999999987 4678999
Q ss_pred EEEECCCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccccEEE
Q 008611 275 KVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAA 354 (559)
Q Consensus 275 ~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~ 354 (559)
++||+.+++|+.++ ++|.+|.+|+++.++++||||||.+.....++++++||+.+++|+.+.. +|.+|..|+++
T Consensus 73 ~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~---~p~~r~~~~~~ 146 (306)
T 3ii7_A 73 DCYNVVKDSWYSKL---GPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPS---MLTQRCSHGMV 146 (306)
T ss_dssp EEEETTTTEEEEEE---CCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECC---CSSCCBSCEEE
T ss_pred EEEeCCCCeEEECC---CCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCC---CcCCcceeEEE
Confidence 99999999999997 6899999999999999999999997555568999999999999999964 58999999999
Q ss_pred EEcCCEEEEEcCCCCCCC----cCceEEEECCCCeeEeccCCCCCCCCccccEEEEECCceecceeeeeeccCCCcEEEE
Q 008611 355 VHAERYLLIFGGGSHAAC----FNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVA 430 (559)
Q Consensus 355 ~~~~~~l~v~GG~~~~~~----~~dv~~~d~~~~~W~~~~~~~~~p~~R~~hs~~~~~~~~~iG~s~~~~~~~~~~~l~v 430 (559)
++ +++|||+||...... ++++++||+.+++|+.+. ++|.+|.+|+++++++ +||+
T Consensus 147 ~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~-----------------~i~v 205 (306)
T 3ii7_A 147 EA-NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELC---PMIEARKNHGLVFVKD-----------------KIFA 205 (306)
T ss_dssp EE-TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETT-----------------EEEE
T ss_pred EE-CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECC---CccchhhcceEEEECC-----------------EEEE
Confidence 87 567999999765554 899999999999999994 7889999999999966 8999
Q ss_pred EcCcCCC-CcccEEEEeCCCcceeccc
Q 008611 431 FGGYNGR-YNNEVHVLKPSHKSTLSSK 456 (559)
Q Consensus 431 ~GG~~~~-~~~~v~~~d~~~~~~~~~~ 456 (559)
|||.++. ..+++++||+.++.|....
T Consensus 206 ~GG~~~~~~~~~~~~yd~~~~~W~~~~ 232 (306)
T 3ii7_A 206 VGGQNGLGGLDNVEYYDIKLNEWKMVS 232 (306)
T ss_dssp ECCEETTEEBCCEEEEETTTTEEEECC
T ss_pred EeCCCCCCCCceEEEeeCCCCcEEECC
Confidence 9998765 5789999999999887653
No 10
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=100.00 E-value=2.3e-34 Score=288.70 Aligned_cols=220 Identities=19% Similarity=0.324 Sum_probs=195.0
Q ss_pred Ccceeccc----eEEecccCCCCCCcccceeEEEECCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCC
Q 008611 164 LGSVVVYD----QWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPS 239 (559)
Q Consensus 164 ~~~~~~~~----~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~ 239 (559)
...++.|| +|..+++ +|.+|.+|++++++++|||+||..+...++++++||+.+++|+.+++
T Consensus 76 ~~~~~~~d~~~~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~----------- 141 (302)
T 2xn4_A 76 VRTVDSYDPVKDQWTSVAN---MRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAP----------- 141 (302)
T ss_dssp CCCEEEEETTTTEEEEECC---CSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECC-----------
T ss_pred ccceEEECCCCCceeeCCC---CCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCC-----------
Confidence 34566665 9999984 89999999999999999999998877888999999999999999854
Q ss_pred CCCCCCCccceeEEeCCEEEEEeccCCCC-CCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCC
Q 008611 240 PALLTPCAGHSLIPWENKLLSIAGHTKDP-SEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAK 318 (559)
Q Consensus 240 ~~~p~~r~~~~~~~~~~~lyv~GG~~~~~-~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~ 318 (559)
+|.+|.+|+++.++++||++||..... ...+++++||+.+++|+.++ ++|.+|.+|++++++++|||+||.+..
T Consensus 142 --~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~ 216 (302)
T 2xn4_A 142 --MNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIA---EMSTRRSGAGVGVLNNLLYAVGGHDGP 216 (302)
T ss_dssp --CSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEECCBSSS
T ss_pred --CCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECC---CCccccccccEEEECCEEEEECCCCCC
Confidence 468999999999999999999987653 34789999999999999996 689999999999999999999998765
Q ss_pred CCCcCceEEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEeccCCCCCCCC
Q 008611 319 RSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTP 398 (559)
Q Consensus 319 ~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~~~~~~~p~~ 398 (559)
. .++++++||+.+++|+.+.. +|.+|..|+++++ ++.|||+||.+....++++++||+.+++|..+. ..+|.+
T Consensus 217 ~-~~~~~~~yd~~~~~W~~~~~---~~~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~--~~~~~~ 289 (302)
T 2xn4_A 217 L-VRKSVEVYDPTTNAWRQVAD---MNMCRRNAGVCAV-NGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVS--SCMSTG 289 (302)
T ss_dssp S-BCCCEEEEETTTTEEEEECC---CSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECS--SCCSSC
T ss_pred c-ccceEEEEeCCCCCEeeCCC---CCCccccCeEEEE-CCEEEEECCcCCCcccccEEEEcCCCCeEEECC--cccCcc
Confidence 4 57899999999999999974 5889999998887 567999999887777899999999999999985 368899
Q ss_pred ccccEEEEECC
Q 008611 399 RAGHAGVTIGE 409 (559)
Q Consensus 399 R~~hs~~~~~~ 409 (559)
|.+|+++++++
T Consensus 290 r~~~~~~~~~~ 300 (302)
T 2xn4_A 290 RSYAGVTVIDK 300 (302)
T ss_dssp CBSCEEEEEEC
T ss_pred cccceEEEecc
Confidence 99999999865
No 11
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=100.00 E-value=5.8e-34 Score=285.58 Aligned_cols=222 Identities=18% Similarity=0.297 Sum_probs=197.2
Q ss_pred EECCEEEEEcc-CCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCCCCCc
Q 008611 193 VVQDKMYIYGG-NHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEI 271 (559)
Q Consensus 193 ~~~~~lyv~GG-~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~ 271 (559)
.+++.||++|| ......++++++||+.+++|..++. +|.+|.+|+++.++++||+|||.... ...
T Consensus 12 ~~~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~-------------~p~~r~~~~~~~~~~~l~v~GG~~~~-~~~ 77 (301)
T 2vpj_A 12 GANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPS-------------ITRKRRYVASVSLHDRIYVIGGYDGR-SRL 77 (301)
T ss_dssp -CCEEEEEECCEETTTEECCCEEEEETTTTEEEECCC-------------CSSCCBSCEEEEETTEEEEECCBCSS-CBC
T ss_pred cCCCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCC-------------CChhhccccEEEECCEEEEEcCCCCC-ccC
Confidence 36889999999 6667889999999999999999854 46789999999999999999998743 678
Q ss_pred ceEEEEECCCCe---EEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcc
Q 008611 272 IQVKVFDLQTCS---WSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPR 348 (559)
Q Consensus 272 ~~v~~yd~~t~~---W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r 348 (559)
+++++||+.+++ |+.++ ++|.+|..|+++.++++|||+||.+... .++++++||+.+++|+.+.. +|.+|
T Consensus 78 ~~~~~~d~~~~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~~-~~~~~~~~d~~~~~W~~~~~---~p~~r 150 (301)
T 2vpj_A 78 SSVECLDYTADEDGVWYSVA---PMNVRRGLAGATTLGDMIYVSGGFDGSR-RHTSMERYDPNIDQWSMLGD---MQTAR 150 (301)
T ss_dssp CCEEEEETTCCTTCCCEEEC---CCSSCCBSCEEEEETTEEEEECCBCSSC-BCCEEEEEETTTTEEEEEEE---CSSCC
T ss_pred ceEEEEECCCCCCCeeEECC---CCCCCccceeEEEECCEEEEEcccCCCc-ccceEEEEcCCCCeEEECCC---CCCCc
Confidence 899999999999 99996 6899999999999999999999997654 47899999999999999975 48899
Q ss_pred cccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEeccCCCCCCCCccccEEEEECCceecceeeeeeccCCCcEE
Q 008611 349 SDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVI 428 (559)
Q Consensus 349 ~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~~~~~~~p~~R~~hs~~~~~~~~~iG~s~~~~~~~~~~~l 428 (559)
..|+++++ +++|||+||......++++++||+.+++|+.+ +.+|.+|.+|+++++++ .|
T Consensus 151 ~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~---~~~p~~r~~~~~~~~~~-----------------~i 209 (301)
T 2vpj_A 151 EGAGLVVA-SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNV---TPMATKRSGAGVALLND-----------------HI 209 (301)
T ss_dssp BSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEEE---CCCSSCCBSCEEEEETT-----------------EE
T ss_pred ccceEEEE-CCEEEEECCCCCCcccceEEEEeCCCCcEEeC---CCCCcccccceEEEECC-----------------EE
Confidence 99999988 56799999988777889999999999999999 47889999999999966 99
Q ss_pred EEEcCcCCC-CcccEEEEeCCCcceeccc
Q 008611 429 VAFGGYNGR-YNNEVHVLKPSHKSTLSSK 456 (559)
Q Consensus 429 ~v~GG~~~~-~~~~v~~~d~~~~~~~~~~ 456 (559)
|++||.++. ..+++++||+.++.|....
T Consensus 210 ~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 238 (301)
T 2vpj_A 210 YVVGGFDGTAHLSSVEAYNIRTDSWTTVT 238 (301)
T ss_dssp EEECCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred EEEeCCCCCcccceEEEEeCCCCcEEECC
Confidence 999999775 4789999999999887654
No 12
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=100.00 E-value=2.7e-34 Score=290.61 Aligned_cols=215 Identities=22% Similarity=0.381 Sum_probs=189.4
Q ss_pred eeccc----eEEecccCCCCCCcccceeEEEECCEEEEEccCC--CCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCC
Q 008611 167 VVVYD----QWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNH--NGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSP 240 (559)
Q Consensus 167 ~~~~~----~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~--~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~ 240 (559)
++.|| +|..++ .+|.+|.+|++++++++|||+||.. +...++++++||+.+++|+.+++
T Consensus 80 ~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~------------ 144 (318)
T 2woz_A 80 FFQLDNVSSEWVGLP---PLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKN------------ 144 (318)
T ss_dssp EEEEETTTTEEEECS---CBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECC------------
T ss_pred EEEEeCCCCcEEECC---CCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCC------------
Confidence 55554 999987 4899999999999999999999975 45778999999999999999854
Q ss_pred CCCCCCccceeEEeCCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCC
Q 008611 241 ALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRS 320 (559)
Q Consensus 241 ~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~ 320 (559)
+|.+|.+|+++.++++|||+||........+++++||+.+++|+.++ ++|.+|..|++++++++|||+||.+...
T Consensus 145 -~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~- 219 (318)
T 2woz_A 145 -LPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLA---PMKTPRSMFGVAIHKGKIVIAGGVTEDG- 219 (318)
T ss_dssp -CSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEEEEEETTE-
T ss_pred -CCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECC---CCCCCcccceEEEECCEEEEEcCcCCCC-
Confidence 47889999999999999999998766667899999999999999997 6899999999999999999999987654
Q ss_pred CcCceEEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCC---------CCCcCceEEEECCCCeeEeccC
Q 008611 321 LLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSH---------AACFNDLHVLDLQTMEWSRPTQ 391 (559)
Q Consensus 321 ~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~---------~~~~~dv~~~d~~~~~W~~~~~ 391 (559)
.++++++||+.+++|+.+.. .|.+|..|+++++ ++.|||+||... ....+++|+||+.+++|+.+
T Consensus 220 ~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~-- 293 (318)
T 2woz_A 220 LSASVEAFDLKTNKWEVMTE---FPQERSSISLVSL-AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM-- 293 (318)
T ss_dssp EEEEEEEEETTTCCEEECCC---CSSCCBSCEEEEE-TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE--
T ss_pred ccceEEEEECCCCeEEECCC---CCCcccceEEEEE-CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh--
Confidence 47899999999999999864 5889999999887 567999999754 24578999999999999998
Q ss_pred CCCCCCCccccEEEEECCc
Q 008611 392 QGEIPTPRAGHAGVTIGEN 410 (559)
Q Consensus 392 ~~~~p~~R~~hs~~~~~~~ 410 (559)
+|.+|++|++++++++
T Consensus 294 ---~~~~r~~~~~~~~~~~ 309 (318)
T 2woz_A 294 ---LKEIRYASGASCLATR 309 (318)
T ss_dssp ---ESCCGGGTTCEEEEEE
T ss_pred ---cccccccccceeeCCE
Confidence 4788999999999773
No 13
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=100.00 E-value=1.7e-34 Score=291.61 Aligned_cols=215 Identities=18% Similarity=0.338 Sum_probs=189.0
Q ss_pred eeccc----eEEecccCCCCCCcccceeEEEECCEEEEEccCC---CCcccCcEEEEEcCCCeEEEeeeccccCCCCCCC
Q 008611 167 VVVYD----QWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNH---NGRYLSDMHILDLRSWAWSKIQAKAVAESTESPS 239 (559)
Q Consensus 167 ~~~~~----~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~---~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~ 239 (559)
++.|| +|..+++ +|.+|.+|++++++++|||+||.. +...++++++||+.+++|+.+++
T Consensus 69 ~~~~d~~~~~W~~~~~---~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~----------- 134 (315)
T 4asc_A 69 FLQFDHLDSEWLGMPP---LPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDP----------- 134 (315)
T ss_dssp EEEEETTTTEEEECCC---BSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCC-----------
T ss_pred eEEecCCCCeEEECCC---CCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCC-----------
Confidence 55554 8999874 899999999999999999999964 46788999999999999999854
Q ss_pred CCCCCCCccceeEEeCCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCC
Q 008611 240 PALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKR 319 (559)
Q Consensus 240 ~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~ 319 (559)
+|.+|.+|+++.++++|||+||........+++++||+.+++|+.++ ++|.+|.+|+++.++++|||+||.+...
T Consensus 135 --~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~ 209 (315)
T 4asc_A 135 --LPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELA---PMQTARSLFGATVHDGRIIVAAGVTDTG 209 (315)
T ss_dssp --CSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEEEEECSSS
T ss_pred --CCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECC---CCCCchhceEEEEECCEEEEEeccCCCC
Confidence 47899999999999999999999666678899999999999999997 6899999999999999999999997665
Q ss_pred CCcCceEEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCC---------CCcCceEEEECCCCeeEecc
Q 008611 320 SLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHA---------ACFNDLHVLDLQTMEWSRPT 390 (559)
Q Consensus 320 ~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~---------~~~~dv~~~d~~~~~W~~~~ 390 (559)
.++++++||+.+++|+.+.. +|.+|..|+++++ +++|||+||.+.. ..++++++||+.+++|+.+
T Consensus 210 -~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~- 283 (315)
T 4asc_A 210 -LTSSAEVYSITDNKWAPFEA---FPQERSSLSLVSL-VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV- 283 (315)
T ss_dssp -EEEEEEEEETTTTEEEEECC---CSSCCBSCEEEEE-TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE-
T ss_pred -ccceEEEEECCCCeEEECCC---CCCcccceeEEEE-CCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh-
Confidence 57899999999999999964 5899999999988 5579999996421 3568999999999999998
Q ss_pred CCCCCCCCccccEEEEECCc
Q 008611 391 QQGEIPTPRAGHAGVTIGEN 410 (559)
Q Consensus 391 ~~~~~p~~R~~hs~~~~~~~ 410 (559)
++.+|.+|+++++++.
T Consensus 284 ----~~~~r~~~~~~~~~~~ 299 (315)
T 4asc_A 284 ----LREIAYAAGATFLPVR 299 (315)
T ss_dssp ----ESCSSCCSSCEEEEEE
T ss_pred ----ccCCcCccceEEeCCE
Confidence 4678999999999773
No 14
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=100.00 E-value=7.3e-34 Score=316.35 Aligned_cols=248 Identities=15% Similarity=0.190 Sum_probs=209.3
Q ss_pred eEEecccCCCCCCcccceeEEEECCEEEEEccCCCCcccCcEEEEEcCCCeEEEee-eccccCCCCCCCCCCCCCCccce
Q 008611 172 QWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQ-AKAVAESTESPSPALLTPCAGHS 250 (559)
Q Consensus 172 ~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~-~~~~~~~~~~~~~~~p~~r~~~~ 250 (559)
+|...+ ..|..|++++++ ++++|||+||... ..++++++||+.+++|+.++ ++. .+.+|.+|.+|+
T Consensus 378 ~~~~~~---~~p~rr~g~~~~-~~~~iyv~GG~~~-~~~~~v~~yd~~~~~W~~~~~~~p--------~~~~p~~R~~hs 444 (695)
T 2zwa_A 378 QLLECE---CPINRKFGDVDV-AGNDVFYMGGSNP-YRVNEILQLSIHYDKIDMKNIEVS--------SSEVPVARMCHT 444 (695)
T ss_dssp EEEECC---CTTCCBSCEEEE-CSSCEEEECCBSS-SBCCCEEEEEECSSCEEEEECCCC--------CSCCCCCCBSCE
T ss_pred eEeccC---CCCCCceeEEEE-ECCEEEEECCCCC-CCcCcEEEEECCCCeEEEeccCCC--------CCCCCccccceE
Confidence 455443 466777776654 8999999999877 78899999999999999997 421 135789999999
Q ss_pred eEEe--CCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEE
Q 008611 251 LIPW--ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHI 327 (559)
Q Consensus 251 ~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~ 327 (559)
++.+ +++||||||.......++++++||+.+++|+.++ ++|.+|.+|+++++ +++||||||.+... ++++
T Consensus 445 ~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~---~~p~~R~~h~~~~~~~~~iyv~GG~~~~~----~v~~ 517 (695)
T 2zwa_A 445 FTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIK---SLSHTRFRHSACSLPDGNVLILGGVTEGP----AMLL 517 (695)
T ss_dssp EEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECC---CCSBCCBSCEEEECTTSCEEEECCBCSSC----SEEE
T ss_pred EEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECC---CCCCCcccceEEEEcCCEEEEECCCCCCC----CEEE
Confidence 9999 9999999999876567899999999999999996 68999999999997 99999999987654 8999
Q ss_pred EECCCCceEEecCCCCCCCcccccEEEEEc-C-CEEEEEcCCCC--CCCcCceEEEECCCCe------eEeccCCCCCCC
Q 008611 328 LDLETMTWDEIDAVGVPPSPRSDHAAAVHA-E-RYLLIFGGGSH--AACFNDLHVLDLQTME------WSRPTQQGEIPT 397 (559)
Q Consensus 328 yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~-~-~~l~v~GG~~~--~~~~~dv~~~d~~~~~------W~~~~~~~~~p~ 397 (559)
||+.+++|+.+...+..|.+|.+|++++++ + ++||||||... ...++++++||+.+++ |..+.. ..+.
T Consensus 518 yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~--~p~~ 595 (695)
T 2zwa_A 518 YNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQ--HPLF 595 (695)
T ss_dssp EETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEE--CGGG
T ss_pred EECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCC--CCCC
Confidence 999999999998877789999999977765 2 67999999753 3668999999999999 888753 1258
Q ss_pred CccccEEEEEC-CceecceeeeeeccCCCcEEEEEcCcCCC----CcccEEEEeCCCcceecccCC
Q 008611 398 PRAGHAGVTIG-ENWFLGLSLVVSSYSGEDVIVAFGGYNGR----YNNEVHVLKPSHKSTLSSKMI 458 (559)
Q Consensus 398 ~R~~hs~~~~~-~~~~iG~s~~~~~~~~~~~l~v~GG~~~~----~~~~v~~~d~~~~~~~~~~~~ 458 (559)
+|.+|++++++ + .||||||+++. ..+++++||+.++.|....++
T Consensus 596 ~R~~~~~~~~~~~-----------------~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~p 644 (695)
T 2zwa_A 596 QRYGSQIKYITPR-----------------KLLIVGGTSPSGLFDRTNSIISLDPLSETLTSIPIS 644 (695)
T ss_dssp CCBSCEEEEEETT-----------------EEEEECCBCSSCCCCTTTSEEEEETTTTEEEECCCC
T ss_pred CcccceEEEeCCC-----------------EEEEECCccCCCCCCCCCeEEEEECCCCeEEEeecc
Confidence 89999999997 4 99999998653 578999999999999855444
No 15
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=100.00 E-value=2.4e-33 Score=288.10 Aligned_cols=235 Identities=17% Similarity=0.201 Sum_probs=186.6
Q ss_pred CCCCcccceeEEEECCEEEEEccCCCCcccCcEEEEEcC--CCeEEEeeeccccCCCCCCCCCCC-CCCccceeEEeCCE
Q 008611 181 QRPKARYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLR--SWAWSKIQAKAVAESTESPSPALL-TPCAGHSLIPWENK 257 (559)
Q Consensus 181 ~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~--t~~W~~~~~~~~~~~~~~~~~~~p-~~r~~~~~~~~~~~ 257 (559)
++|.+|.+|++++++++|||+||... +++++||+. +++|+.+++ +| .+|.+|+++.++++
T Consensus 5 ~lP~~r~~~~~~~~~~~iyv~GG~~~----~~~~~~d~~~~~~~W~~~~~-------------~p~~~R~~~~~~~~~~~ 67 (357)
T 2uvk_A 5 ETPVPFKSGTGAIDNDTVYIGLGSAG----TAWYKLDTQAKDKKWTALAA-------------FPGGPRDQATSAFIDGN 67 (357)
T ss_dssp CCSSCCCSCEEEEETTEEEEECGGGT----TCEEEEETTSSSCCEEECCC-------------CTTCCCBSCEEEEETTE
T ss_pred CCCccccceEEEEECCEEEEEeCcCC----CeEEEEccccCCCCeeECCC-------------CCCCcCccceEEEECCE
Confidence 58999999999999999999999653 589999998 499999854 46 79999999999999
Q ss_pred EEEEeccCC----CCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCC--------------
Q 008611 258 LLSIAGHTK----DPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKR-------------- 319 (559)
Q Consensus 258 lyv~GG~~~----~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~-------------- 319 (559)
||||||... ....++++++||+.+++|+.+++.. |.+|.+|++++++++||||||.+...
T Consensus 68 lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~--p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~ 145 (357)
T 2uvk_A 68 LYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHA--PMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKD 145 (357)
T ss_dssp EEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCC--SSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTC
T ss_pred EEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCC--CcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCc
Confidence 999999822 2346789999999999999998542 59999999999999999999986432
Q ss_pred -------------------CCcCceEEEECCCCceEEecCCCCCCCcccc-cEEEEEcCCEEEEEcCCCCC-CCcCceEE
Q 008611 320 -------------------SLLNDLHILDLETMTWDEIDAVGVPPSPRSD-HAAAVHAERYLLIFGGGSHA-ACFNDLHV 378 (559)
Q Consensus 320 -------------------~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~-~~~~~~~~~~l~v~GG~~~~-~~~~dv~~ 378 (559)
.+++++++||+.+++|+.+... |.+|.. |+++++ ++.||||||.... ...+++++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~---p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~ 221 (357)
T 2uvk_A 146 STAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGES---PWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFE 221 (357)
T ss_dssp HHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEEC---SSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEE
T ss_pred ccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCC---CCCCcccccEEEE-CCEEEEEeeecCCCcccCceEE
Confidence 2468999999999999999654 665555 888777 6679999996533 45788999
Q ss_pred EEC--CCCeeEeccCCCCCCCCccccEEEEECCceecceeeeeeccCCCcEEEEEcCcCCC------------------C
Q 008611 379 LDL--QTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNGR------------------Y 438 (559)
Q Consensus 379 ~d~--~~~~W~~~~~~~~~p~~R~~hs~~~~~~~~~iG~s~~~~~~~~~~~l~v~GG~~~~------------------~ 438 (559)
||+ .+++|+.+... ..|.+|.+|+++++++ .||||||.+.. .
T Consensus 222 ~d~d~~~~~W~~~~~~-~~~~~~~~~~~~~~~~-----------------~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~ 283 (357)
T 2uvk_A 222 LDFTGNNLKWNKLAPV-SSPDGVAGGFAGISND-----------------SLIFAGGAGFKGSRENYQNGKNYAHEGLKK 283 (357)
T ss_dssp EECC---CEEEECCCS-STTTCCBSCEEEEETT-----------------EEEEECCEECTTHHHHHHTTCSSTTTTCCC
T ss_pred EEecCCCCcEEecCCC-CCCcccccceEEEECC-----------------EEEEEcCccccCCcccccccceeccccccc
Confidence 987 89999998532 2344567888998866 99999996421 2
Q ss_pred cccEEEEeCCCcceeccc
Q 008611 439 NNEVHVLKPSHKSTLSSK 456 (559)
Q Consensus 439 ~~~v~~~d~~~~~~~~~~ 456 (559)
.+++++||+.++.|....
T Consensus 284 ~~~~~~yd~~~~~W~~~~ 301 (357)
T 2uvk_A 284 SYSTDIHLWHNGKWDKSG 301 (357)
T ss_dssp EECCEEEECC---CEEEE
T ss_pred eeeEEEEecCCCceeeCC
Confidence 468999999999777653
No 16
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=100.00 E-value=1.3e-33 Score=314.33 Aligned_cols=251 Identities=19% Similarity=0.198 Sum_probs=206.3
Q ss_pred Ccceeccc----eEEecc-c--CCCCCCcccceeEEEE--CCEEEEEccCCCCc-ccCcEEEEEcCCCeEEEeeeccccC
Q 008611 164 LGSVVVYD----QWIAPP-I--SGQRPKARYEHGAAVV--QDKMYIYGGNHNGR-YLSDMHILDLRSWAWSKIQAKAVAE 233 (559)
Q Consensus 164 ~~~~~~~~----~W~~~~-~--~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~-~~~~v~~yd~~t~~W~~~~~~~~~~ 233 (559)
.+.++.|| +|..++ + .+.+|.+|.+|+++++ +++|||+||..... .++++|+||+.+++|+.+++
T Consensus 411 ~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~----- 485 (695)
T 2zwa_A 411 VNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKS----- 485 (695)
T ss_dssp CCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCC-----
T ss_pred cCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCC-----
Confidence 34566664 899887 3 3578999999999999 99999999987654 78999999999999999854
Q ss_pred CCCCCCCCCCCCCccceeEEe-CCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEEC---CEE
Q 008611 234 STESPSPALLTPCAGHSLIPW-ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVG---TSL 309 (559)
Q Consensus 234 ~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~---~~l 309 (559)
+|.+|.+|+++.+ +++||||||.+... ++++||+.+++|+.+++.|++|.+|.+|++++++ ++|
T Consensus 486 --------~p~~R~~h~~~~~~~~~iyv~GG~~~~~----~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~i 553 (695)
T 2zwa_A 486 --------LSHTRFRHSACSLPDGNVLILGGVTEGP----AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQG 553 (695)
T ss_dssp --------CSBCCBSCEEEECTTSCEEEECCBCSSC----SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEE
T ss_pred --------CCCCcccceEEEEcCCEEEEECCCCCCC----CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEE
Confidence 4789999999997 99999999997653 8999999999999999877799999999988876 899
Q ss_pred EEEcCcCCCC-CCcCceEEEECCCCc------eEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCC---CcCceEEE
Q 008611 310 VIFGGEDAKR-SLLNDLHILDLETMT------WDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAA---CFNDLHVL 379 (559)
Q Consensus 310 yv~GG~~~~~-~~~~~~~~yd~~t~~------W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~---~~~dv~~~ 379 (559)
|||||.+..+ ..++++++||+.+++ |+.+... ++.+|.+|+++++++++|||+||.+... ..+++++|
T Consensus 554 yv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~--p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~y 631 (695)
T 2zwa_A 554 IILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQH--PLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISL 631 (695)
T ss_dssp EEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEEC--GGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEE
T ss_pred EEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCC--CCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEE
Confidence 9999986543 568999999999999 8888653 3689999999998757899999976543 57899999
Q ss_pred ECCCCeeEeccCCCC----CCCCccccEEEEECCceecceeeeeeccCCCcEEEEEcCcC-----CCCcccEEEEeCCC
Q 008611 380 DLQTMEWSRPTQQGE----IPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYN-----GRYNNEVHVLKPSH 449 (559)
Q Consensus 380 d~~~~~W~~~~~~~~----~p~~R~~hs~~~~~~~~~iG~s~~~~~~~~~~~l~v~GG~~-----~~~~~~v~~~d~~~ 449 (559)
|+.+++|..+..... .+..+.+|+++++++ +.||||||.. |.+.+++|.+|+..
T Consensus 632 d~~t~~W~~~~~p~~~~~~~~p~~~gh~~~~~~~----------------g~i~v~GGg~~cfsfGt~~n~i~~ldl~~ 694 (695)
T 2zwa_A 632 DPLSETLTSIPISRRIWEDHSLMLAGFSLVSTSM----------------GTIHIIGGGATCYGFGSVTNVGLKLIAIA 694 (695)
T ss_dssp ETTTTEEEECCCCHHHHHHSCCCCSSCEEECC-------------------CEEEECCEEECTTSCEEECCCEEEEECC
T ss_pred ECCCCeEEEeeccccccCCCCccceeeeEEEeCC----------------CEEEEEeCCccCcCccccccceEEEEEEc
Confidence 999999997643211 112577898888754 2799999942 44567999998764
No 17
>1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1
Probab=99.97 E-value=1.5e-31 Score=212.64 Aligned_cols=88 Identities=27% Similarity=0.543 Sum_probs=81.5
Q ss_pred hHHHHHHHHHHhcccCCCCcccccccCCCChhhHHHHhhheeeeecCCCCCCCCCCCChhhhhhHHHHhcCCCCCHHHHH
Q 008611 12 YPERFYAAASYAGFDGSPNSSAKELTSKFSNDSALLLYALYQQATVGPCNVPKPSSWSPVEQSKWKSWQGLGNMATTEAM 91 (559)
Q Consensus 12 ~~~~f~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~ly~l~kqa~~g~~~~~~p~~~~~~~~~k~~aw~~~~~~s~~~a~ 91 (559)
|+++|++|+++|+.... ...|++|++|+|||||||||+|||++++||+||+++++||+||++++|||++|||
T Consensus 2 l~~~F~~A~~~v~~l~~--------~~~~~~~~~L~LYalyKQAt~Gd~~~~~Pg~~d~~~~aKw~AW~~l~gms~eeA~ 73 (89)
T 1hbk_A 2 MAQVFEECVSFINGLPR--------TINLPNELKLDLYKYYKQSTIGNCNIKEPSAHKYIDRKKYEAWKSVENLNREDAQ 73 (89)
T ss_dssp HHHHHHHHHHHHHHSCT--------TCCCCHHHHHHHHHHHHHHHTCSCCSCCCCTTSHHHHHHHHHHHHTTTCCHHHHH
T ss_pred hHHHHHHHHHHHHhcCC--------cCCCCHHHHHHHHHHHHHhhcCCCCCCCCCccCHHhHHHHHHHHHhcCCCHHHHH
Confidence 68999999999964221 2689999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCccc
Q 008611 92 RLFVKILEEEDPGWYS 107 (559)
Q Consensus 92 ~~yv~~~~~~~~~~~~ 107 (559)
++||++|++++|.|.+
T Consensus 74 ~~YI~~v~~l~~~~~~ 89 (89)
T 1hbk_A 74 KRYVDIVSEIFPYWQD 89 (89)
T ss_dssp HHHHHHHHHHCTTTTC
T ss_pred HHHHHHHHHHcccccC
Confidence 9999999999999964
No 18
>2cop_A Acyl-coenzyme A binding domain containing 6; acyl COA binding protein, COA binding protein, lipid binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.97 E-value=2.8e-31 Score=217.98 Aligned_cols=95 Identities=34% Similarity=0.648 Sum_probs=88.3
Q ss_pred cCCCChHHHHHHHHHHhcccCCCCcccccccCCCChhhHHHHhhheeeeecCCCCCCCCCCCChhhhhhHHHHhcCCCCC
Q 008611 7 SSGLAYPERFYAAASYAGFDGSPNSSAKELTSKFSNDSALLLYALYQQATVGPCNVPKPSSWSPVEQSKWKSWQGLGNMA 86 (559)
Q Consensus 7 ~~~~~~~~~f~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~ly~l~kqa~~g~~~~~~p~~~~~~~~~k~~aw~~~~~~s 86 (559)
+...+|+++|++|+++|+ .+...|+++++|+|||||||||+|||++++|++||+++++||+||++|+|||
T Consensus 3 ~~~~~l~~~F~~A~~~vk----------~l~~~p~~~~~L~LYaLyKQAt~Gd~~~~~Pg~~d~~~raKw~AW~~l~gms 72 (109)
T 2cop_A 3 SGSSGLAELFEKAAAHLQ----------GLIQVASREQLLYLYARYKQVKVGNCNTPKPSFFDFEGKQKWEAWKALGDSS 72 (109)
T ss_dssp CCCCCSHHHHHHHHHHHT----------TSTTTSCHHHHHHHHHHHHHHHTCSCCSCCCCSSCHHHHHHHHHHHSCTTCC
T ss_pred CcchHHHHHHHHHHHHHH----------HcccCCCHHHHHHHHHHHHHhhcCCCCCCCCCccCHHHHHHHHHHHHhcCCC
Confidence 445568999999999996 3456799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCccccCcC
Q 008611 87 TTEAMRLFVKILEEEDPGWYSRASN 111 (559)
Q Consensus 87 ~~~a~~~yv~~~~~~~~~~~~~~~~ 111 (559)
++|||++||++|++++|.|....+.
T Consensus 73 ~eeAm~~YI~lv~~l~~~~~~~~~~ 97 (109)
T 2cop_A 73 PSQAMQEYIAVVKKLDPGWNPQIPE 97 (109)
T ss_dssp HHHHHHHHHHHHHHHCTTCCCCCCC
T ss_pred HHHHHHHHHHHHHHHhhhhcccchh
Confidence 9999999999999999999988764
No 19
>3epy_A Acyl-COA-binding domain-containing protein 7; acyl-COA binding protein, fatty acid, lipid metabolism, structural genomics; HET: COA PLM; 2.00A {Homo sapiens} SCOP: a.11.1.1
Probab=99.97 E-value=1.3e-31 Score=211.82 Aligned_cols=87 Identities=24% Similarity=0.374 Sum_probs=81.6
Q ss_pred CChHHHHHHHHHHhcccCCCCcccccccCCCChhhHHHHhhheeeeecCCCCCCCCCCCChhhhhhHHHHhcCCCCCHHH
Q 008611 10 LAYPERFYAAASYAGFDGSPNSSAKELTSKFSNDSALLLYALYQQATVGPCNVPKPSSWSPVEQSKWKSWQGLGNMATTE 89 (559)
Q Consensus 10 ~~~~~~f~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~ly~l~kqa~~g~~~~~~p~~~~~~~~~k~~aw~~~~~~s~~~ 89 (559)
++|+++|++|+++|+ .+...|++|++|+|||||||||+|||++++|++||+++++||+||++++|||++|
T Consensus 2 m~L~~~F~~A~~~vk----------~l~~~p~~~~~L~lYalyKQAt~Gd~~~~~Pg~~d~~~~aKw~AW~~l~g~s~ee 71 (89)
T 3epy_A 2 MALQADFDRAAEDVR----------KLKARPDDGELKELYGLYKQAIVGDINIACPGMLDLKGKAKWEAWNLKKGLSTED 71 (89)
T ss_dssp CHHHHHHHHHHHHGG----------GCSSCCCHHHHHHHHHHHHHHHTCSCCSCCTTTTCHHHHHHHHHHHTTTTCCHHH
T ss_pred CcHHHHHHHHHHHHH----------HcCCCcCHHHHHHHHHHHHHHhhCCCCCCCCcccchHHHHHHHHHHHhhCCCHHH
Confidence 358999999999996 4556899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcc
Q 008611 90 AMRLFVKILEEEDPGWY 106 (559)
Q Consensus 90 a~~~yv~~~~~~~~~~~ 106 (559)
||++||++|++++|.|.
T Consensus 72 A~~~Yi~~v~~l~~ky~ 88 (89)
T 3epy_A 72 ATSAYISKAKELIEKYG 88 (89)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhhhc
Confidence 99999999999998763
No 20
>1st7_A ACBP, acyl-COA-binding protein; four helix bundle, transport protein; NMR {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.4e-31 Score=211.34 Aligned_cols=85 Identities=29% Similarity=0.502 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHhcccCCCCcccccccCCCChhhHHHHhhheeeeecCCCCCCCCCCCChhhhhhHHHHhcCCCCCHHHHH
Q 008611 12 YPERFYAAASYAGFDGSPNSSAKELTSKFSNDSALLLYALYQQATVGPCNVPKPSSWSPVEQSKWKSWQGLGNMATTEAM 91 (559)
Q Consensus 12 ~~~~f~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~ly~l~kqa~~g~~~~~~p~~~~~~~~~k~~aw~~~~~~s~~~a~ 91 (559)
|+++|++|+++|+ .+...|+++++|+|||||||||+|||++++||+||+++++||+||++++|||++|||
T Consensus 1 l~~~F~~A~~~v~----------~l~~~~~~~~~L~lYalyKQAt~Gd~~~~~Pg~~d~~~raKw~AW~~l~gms~eeA~ 70 (86)
T 1st7_A 1 VSQLFEEKAKAVN----------ELPTKPSTDELLELYALYKQATVGDNDKEKPGIFNMKDRYKWEAWENLKGKSQEDAE 70 (86)
T ss_dssp CHHHHHHHHHHHT----------SCSSCCCHHHHHHHHHHHHHHHHCSCCCCCCCSSCHHHHHHHHHHHTTTTTHHHHHH
T ss_pred CHHHHHHHHHHHH----------HccCCcCHHHHHHHHHHHHHHhhCCCCCCCCCccCHHHHHHHHHHHHcCCCCHHHHH
Confidence 5799999999996 345679999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcc
Q 008611 92 RLFVKILEEEDPGWY 106 (559)
Q Consensus 92 ~~yv~~~~~~~~~~~ 106 (559)
++||++|++++|.|.
T Consensus 71 ~~YI~~v~~l~~~~~ 85 (86)
T 1st7_A 71 KEYIALVDQLIAKYS 85 (86)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhhhc
Confidence 999999999999985
No 21
>2cqu_A Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.97 E-value=9.7e-31 Score=215.94 Aligned_cols=99 Identities=31% Similarity=0.586 Sum_probs=88.8
Q ss_pred ccccccCCCChHHHHHHHHHHhcccCCCCcccccccCCCChhhHHHHhhheeeeecCCCCCCCCCCCChhhhhhHHHHhc
Q 008611 2 AMARASSGLAYPERFYAAASYAGFDGSPNSSAKELTSKFSNDSALLLYALYQQATVGPCNVPKPSSWSPVEQSKWKSWQG 81 (559)
Q Consensus 2 ~~~~~~~~~~~~~~f~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~ly~l~kqa~~g~~~~~~p~~~~~~~~~k~~aw~~ 81 (559)
+|....|. .++++|++|+++|+ .+...|+++++|+|||||||||+|||+.++|++||+++++||+||++
T Consensus 7 ~~~~~~m~-~~~~~F~~A~~~vk----------~l~~~p~~~~~L~LYaLyKQAt~Gd~~~~~Pg~~d~~graKw~AW~~ 75 (116)
T 2cqu_A 7 GMNRTAMR-ASQKDFENSMNQVK----------LLKKDPGNEVKLKLYALYKQATEGPCNMPKPGVFDLINKAKWDAWNA 75 (116)
T ss_dssp CCCCSSCC-CCHHHHHHHHHHHH----------HCCSCCCHHHHHHHHHHHTTTTTCSCCSCCCCTTCHHHHHHHHHHHH
T ss_pred ccccccHH-HHHHHHHHHHHHHH----------HccCCCCHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHHHHH
Confidence 34444443 36999999999996 45567999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCccccCcC
Q 008611 82 LGNMATTEAMRLFVKILEEEDPGWYSRASN 111 (559)
Q Consensus 82 ~~~~s~~~a~~~yv~~~~~~~~~~~~~~~~ 111 (559)
|+|||++|||++||++|++++|.|.....+
T Consensus 76 l~gms~eeAm~~YI~lv~~l~~~~~~~~~~ 105 (116)
T 2cqu_A 76 LGSLPKEAARQNYVDLVSSLSPSLESSSQV 105 (116)
T ss_dssp HCSCCHHHHHHHHHHHHHHHCSCCCCCCCC
T ss_pred hcCCCHHHHHHHHHHHHHHHcccccccccc
Confidence 999999999999999999999999987765
No 22
>2lbb_A Acyl COA binding protein; protein binding, structural genomi seattle structural genomics center for infectious disease,; NMR {Babesia bovis}
Probab=99.96 E-value=9.2e-31 Score=208.48 Aligned_cols=84 Identities=40% Similarity=0.721 Sum_probs=79.5
Q ss_pred HHHHHHHHHhcccCCCCccccccc-CCCChhhHHHHhhheeeeecCCCCCCCCCCCChhhhhhHHHHhcCCCCCHHHHHH
Q 008611 14 ERFYAAASYAGFDGSPNSSAKELT-SKFSNDSALLLYALYQQATVGPCNVPKPSSWSPVEQSKWKSWQGLGNMATTEAMR 92 (559)
Q Consensus 14 ~~f~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ly~l~kqa~~g~~~~~~p~~~~~~~~~k~~aw~~~~~~s~~~a~~ 92 (559)
++|++|++.|+ .++ ..|++|++|+|||||||||+|||++++||+||+++++||+||++++|||++|||+
T Consensus 12 ~~F~~A~~~vk----------~l~~~~ps~~~~L~LYaLyKQAt~Gd~~~~~Pg~~d~~graKw~AW~~l~gmS~eeAm~ 81 (96)
T 2lbb_A 12 DDFDAAVKYVS----------NTTTMMASNDDKLCFYKYYKQATVGDCNKPKPGMLQLQEKYKWEAWNALRGMSTESAKE 81 (96)
T ss_dssp STHHHHHHHHH----------HCCCSCCCTTTTTHHHHHHHHTTTSSCCCCCCCSSCSHHHHHHHHHHHTTTCCHHHHHH
T ss_pred HHHHHHHHHHH----------hCCCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCcccHHhHHHHHHHHHhcCCCHHHHHH
Confidence 57999999996 445 7899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCccc
Q 008611 93 LFVKILEEEDPGWYS 107 (559)
Q Consensus 93 ~yv~~~~~~~~~~~~ 107 (559)
+||++|++++|.|.+
T Consensus 82 ~YI~lv~~l~~~~~~ 96 (96)
T 2lbb_A 82 AYVKLLDTLAPSWRN 96 (96)
T ss_dssp HHHHHHHHHCGGGTC
T ss_pred HHHHHHHHHhchhcC
Confidence 999999999999963
No 23
>2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty acid, acetylation, alternative splicing, lipid-binding, transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A 1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A
Probab=99.96 E-value=2.1e-30 Score=204.59 Aligned_cols=84 Identities=29% Similarity=0.509 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhcccCCCCcccccccCCCChhhHHHHhhheeeeecCCCCCCCCCCCChhhhhhHHHHhcCCCCCHHHHHH
Q 008611 13 PERFYAAASYAGFDGSPNSSAKELTSKFSNDSALLLYALYQQATVGPCNVPKPSSWSPVEQSKWKSWQGLGNMATTEAMR 92 (559)
Q Consensus 13 ~~~f~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~ly~l~kqa~~g~~~~~~p~~~~~~~~~k~~aw~~~~~~s~~~a~~ 92 (559)
+++|++|+++|+ .+...|++|++|+|||||||||+|||++++||+||+++++||+||++++|||++|||+
T Consensus 3 ~~~F~~A~~~vk----------~l~~~~~~~~~L~lYalyKQAt~Gd~~~~~Pg~~d~~~~aKw~AW~~l~gms~eeA~~ 72 (87)
T 2cb8_A 3 QAEFEKAAEEVR----------HLKTKPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWDAWNELKGTSKEDAMK 72 (87)
T ss_dssp HHHHHHHHHHGG----------GCSSCCCHHHHHHHHHHHHHHHTCSCCSCCCCTTCHHHHHHHHHHHTTTTCCHHHHHH
T ss_pred HHHHHHHHHHHH----------HccCCcCHHHHHHHHHHHHhhhhCCCCCCCCCcccHHHHHHHHHHHHcCCCCHHHHHH
Confidence 789999999996 4456799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCcc
Q 008611 93 LFVKILEEEDPGWY 106 (559)
Q Consensus 93 ~yv~~~~~~~~~~~ 106 (559)
+||++|++++|.|.
T Consensus 73 ~Yi~~v~~l~~~~~ 86 (87)
T 2cb8_A 73 AYINKVEELKKKYG 86 (87)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999998874
No 24
>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} SCOP: a.11.1.0
Probab=99.96 E-value=6.8e-30 Score=207.70 Aligned_cols=89 Identities=24% Similarity=0.343 Sum_probs=81.9
Q ss_pred CChHHHHHHHHHHhcccCCCCcccccccCCCChhhHHHHhhheeeeecCCCCCCCCCCCChhhhhhHHHHhcCCCCCHHH
Q 008611 10 LAYPERFYAAASYAGFDGSPNSSAKELTSKFSNDSALLLYALYQQATVGPCNVPKPSSWSPVEQSKWKSWQGLGNMATTE 89 (559)
Q Consensus 10 ~~~~~~f~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~ly~l~kqa~~g~~~~~~p~~~~~~~~~k~~aw~~~~~~s~~~ 89 (559)
++++++|++|+++|+..+ +.+..+|+++++|+|||||||||+|||++++||+||+++++||+||++++|||++|
T Consensus 2 ~~~~~~F~~A~~~vk~l~------~~g~~~ps~~~~L~LYalyKQAt~Gd~~~~~Pg~~d~~~raKw~AW~~l~gmS~ee 75 (106)
T 3fp5_A 2 HMSKAKFDKAVEIVQSLP------KDGPIKPTQDEQLYFYKYFKQATVGDVNISRPGLMDFTGKAKWDAWKSVEGTSKEV 75 (106)
T ss_dssp CCCHHHHHHHHHHHHHCC------SSSSSCCCHHHHHHHHHHHHHHHTCSCCSCCCCTTCHHHHHHHHHHHTTTTCCHHH
T ss_pred CchHHHHHHHHHHHHhcc------cccCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHHHHHHHccCCCHHH
Confidence 456999999999997533 33456899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCC
Q 008611 90 AMRLFVKILEEEDPG 104 (559)
Q Consensus 90 a~~~yv~~~~~~~~~ 104 (559)
||++||++|++++|.
T Consensus 76 A~~~YI~~v~~l~~~ 90 (106)
T 3fp5_A 76 AYQKYVEKLLEILKK 90 (106)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999999987
No 25
>2wh5_A Acyl-COA-binding domain-containing protein 4; alternative splicing, fatty acid metabolism, lipid transport, lipid binding protein; HET: STE ST9 COA; 2.60A {Homo sapiens}
Probab=99.96 E-value=5.1e-30 Score=208.78 Aligned_cols=96 Identities=30% Similarity=0.550 Sum_probs=82.9
Q ss_pred CCChHHHHHHHHHHhcccCCCCcccccccCCCChhhHHHHhhheeeeecCCCCCCCCCCCChhhhhhHHHHhcCCCCCHH
Q 008611 9 GLAYPERFYAAASYAGFDGSPNSSAKELTSKFSNDSALLLYALYQQATVGPCNVPKPSSWSPVEQSKWKSWQGLGNMATT 88 (559)
Q Consensus 9 ~~~~~~~f~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~ly~l~kqa~~g~~~~~~p~~~~~~~~~k~~aw~~~~~~s~~ 88 (559)
...|+++|++|+++|+.++ +.+...|+++++|+|||||||||+|||+.++|++||+++++||+||++++|||++
T Consensus 5 ~~~l~~~F~~A~~~vk~l~------~~g~~~ps~e~~L~LYaLyKQAt~Gd~~~~~Pg~~d~~~~aKw~AW~~l~gms~e 78 (106)
T 2wh5_A 5 EPDCQKQFQAAVSVIQNLP------KNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPGFWDPIGRYKWDAWNSLGKMSRE 78 (106)
T ss_dssp ----CHHHHHHHHHHHHSC------SSCSCCCCHHHHHHHHHHHHHHHHCSCCSCCCCTTCHHHHHHHHHHHTTTTCCHH
T ss_pred chHHHHHHHHHHHHHHhcc------ccCCCCCCHHHHHHHHHHHhhhccCCCCCCCCCcccHHHHHHHHHHHHhcCCCHH
Confidence 3457899999999997533 2345589999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCccccCc
Q 008611 89 EAMRLFVKILEEEDPGWYSRAS 110 (559)
Q Consensus 89 ~a~~~yv~~~~~~~~~~~~~~~ 110 (559)
|||++||+++++++|.+.+..+
T Consensus 79 eA~~~YI~~v~~l~~k~~~t~~ 100 (106)
T 2wh5_A 79 EAMSAYITEMKLVAQKVIDTVP 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHhhccCC
Confidence 9999999999999998876554
No 26
>3flv_A Acyl-COA-binding domain-containing protein 5; lipid binding, structural genomics, struct genomics consortium, SGC, lipid-binding, membrane; HET: STE COA; 1.70A {Homo sapiens}
Probab=99.95 E-value=1.8e-29 Score=208.01 Aligned_cols=90 Identities=31% Similarity=0.570 Sum_probs=82.0
Q ss_pred ChHHHHHHHHHHhcccCCCCcccccccCCCChhhHHHHhhheeeeecCCCCCCCCCCCChhhhhhHHHHhcCCCCCHHHH
Q 008611 11 AYPERFYAAASYAGFDGSPNSSAKELTSKFSNDSALLLYALYQQATVGPCNVPKPSSWSPVEQSKWKSWQGLGNMATTEA 90 (559)
Q Consensus 11 ~~~~~f~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~ly~l~kqa~~g~~~~~~p~~~~~~~~~k~~aw~~~~~~s~~~a 90 (559)
.|+++|++|+++|+. +++.+..+|++|++|+|||||||||+|||+.++|++||+++++||+||++++|||++||
T Consensus 23 dLe~~F~~A~~~Vk~------l~~~g~~~ps~d~~L~LYaLyKQAT~Gd~~~~~Pg~~d~~graKw~AW~~l~gmS~eeA 96 (119)
T 3flv_A 23 MHETRFEAAVKVIQS------LPKNGSFQPTNEMMLKFYSFYKQATEGPCKLSRPGFWDPIGRYKWDAWSSLGDMTKEEA 96 (119)
T ss_dssp HHHHHHHHHHHHHHH------HHHHSSCCCCHHHHHHHHHHHHHHHTCSCCSCCCCTTCHHHHHHHHHHHHTTTCCHHHH
T ss_pred HHHHHHHHHHHHHHh------CcccCCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHccCCCHHHH
Confidence 578999999999974 23444567999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcc
Q 008611 91 MRLFVKILEEEDPGWY 106 (559)
Q Consensus 91 ~~~yv~~~~~~~~~~~ 106 (559)
|++||++++++++..-
T Consensus 97 m~~YI~~v~~l~~~~~ 112 (119)
T 3flv_A 97 MIAYVEEMKKIIETMP 112 (119)
T ss_dssp HHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhCC
Confidence 9999999999987653
No 27
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.95 E-value=1e-26 Score=258.02 Aligned_cols=242 Identities=14% Similarity=0.139 Sum_probs=183.9
Q ss_pred ceEEecccCCCCCCcccceeEEEE--CCEEEEEccCCCCc------ccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCC
Q 008611 171 DQWIAPPISGQRPKARYEHGAAVV--QDKMYIYGGNHNGR------YLSDMHILDLRSWAWSKIQAKAVAESTESPSPAL 242 (559)
Q Consensus 171 ~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~------~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~ 242 (559)
++|..+++ + ||..++++++ +++|||+||..... ..+++++||+.+++|+.+..+.
T Consensus 176 ~~W~~~~~---~--P~~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~------------ 238 (656)
T 1k3i_A 176 GRWGPTID---L--PIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV------------ 238 (656)
T ss_dssp CEEEEEEE---C--SSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEE------------
T ss_pred Ceeeeecc---C--CCCceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccC------------
Confidence 49998764 3 3466666766 99999999975432 3458999999999999987753
Q ss_pred CCCCccc--eeEE-eCCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEE-CCEEEEEcCcCCC
Q 008611 243 LTPCAGH--SLIP-WENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAK 318 (559)
Q Consensus 243 p~~r~~~--~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~ 318 (559)
.+|..| +++. .+++||++||.... ++++||+.+++|+.++ ++|.+|.+|+++++ +++|||+||....
T Consensus 239 -~~~~~~~~~~~~~~~g~lyv~GG~~~~-----~v~~yd~~t~~W~~~~---~~~~~R~~~s~~~~~dg~iyv~GG~~~~ 309 (656)
T 1k3i_A 239 -TKHDMFCPGISMDGNGQIVVTGGNDAK-----KTSLYDSSSDSWIPGP---DMQVARGYQSSATMSDGRVFTIGGSWSG 309 (656)
T ss_dssp -CSCCCSSCEEEECTTSCEEEECSSSTT-----CEEEEEGGGTEEEECC---CCSSCCSSCEEEECTTSCEEEECCCCCS
T ss_pred -CCCCCccccccCCCCCCEEEeCCCCCC-----ceEEecCcCCceeECC---CCCccccccceEEecCCeEEEEeCcccC
Confidence 445444 3443 58999999997543 7999999999999996 68999999999999 9999999995444
Q ss_pred CCCcCceEEEECCCCceEEecCCCC--CC---------------------------------------------------
Q 008611 319 RSLLNDLHILDLETMTWDEIDAVGV--PP--------------------------------------------------- 345 (559)
Q Consensus 319 ~~~~~~~~~yd~~t~~W~~~~~~~~--~p--------------------------------------------------- 345 (559)
...++++++||+.+++|+.++..+. ++
T Consensus 310 ~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~ 389 (656)
T 1k3i_A 310 GVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQ 389 (656)
T ss_dssp SSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECE
T ss_pred CcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccc
Confidence 4468899999999999999732110 01
Q ss_pred ------CcccccEEEEE--cCCEEEEEcCCCC---CCCcC---ceEEEECCCCeeEeccCCCCCCCCccccEEEEE-CCc
Q 008611 346 ------SPRSDHAAAVH--AERYLLIFGGGSH---AACFN---DLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTI-GEN 410 (559)
Q Consensus 346 ------~~r~~~~~~~~--~~~~l~v~GG~~~---~~~~~---dv~~~d~~~~~W~~~~~~~~~p~~R~~hs~~~~-~~~ 410 (559)
.++..++++++ .+++|||+||... ...++ .+++||+.+++|..+. .+.+|.+|..|+++++ ++
T Consensus 390 ~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~-~~~mp~~R~~~~~~~l~~g- 467 (656)
T 1k3i_A 390 SNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA-SNGLYFARTFHTSVVLPDG- 467 (656)
T ss_dssp ETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEEC-TTCCSSCCBSCEEEECTTS-
T ss_pred cccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEc-cCCCCCCcccCCeEECCCC-
Confidence 11234455542 3678999999532 33444 7899999999999884 2478999999999888 44
Q ss_pred eecceeeeeeccCCCcEEEEEcCcCC-------CCcccEEEEeCCCcceeccc
Q 008611 411 WFLGLSLVVSSYSGEDVIVAFGGYNG-------RYNNEVHVLKPSHKSTLSSK 456 (559)
Q Consensus 411 ~~iG~s~~~~~~~~~~~l~v~GG~~~-------~~~~~v~~~d~~~~~~~~~~ 456 (559)
+|||+||.+. ...+++++||+.++.|....
T Consensus 468 ----------------~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~ 504 (656)
T 1k3i_A 468 ----------------STFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQN 504 (656)
T ss_dssp ----------------CEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECC
T ss_pred ----------------CEEEECCcccCcCcCCCCcccceEEEcCCCCceeecC
Confidence 8999999752 34689999999999887644
No 28
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.94 E-value=2.6e-26 Score=254.90 Aligned_cols=241 Identities=12% Similarity=0.120 Sum_probs=182.3
Q ss_pred ceeccc----eEEecccCCCCCCccccee--EEE-ECCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCC
Q 008611 166 SVVVYD----QWIAPPISGQRPKARYEHG--AAV-VQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESP 238 (559)
Q Consensus 166 ~~~~~~----~W~~~~~~g~~p~~r~~~~--~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~ 238 (559)
.+..|| +|..++. +|.+|..|+ +++ .+++||++||.... ++++||+.+++|..+++
T Consensus 220 ~~~~yd~~t~~w~~~~~---~~~~~~~~~~~~~~~~~g~lyv~GG~~~~----~v~~yd~~t~~W~~~~~---------- 282 (656)
T 1k3i_A 220 LTSSWDPSTGIVSDRTV---TVTKHDMFCPGISMDGNGQIVVTGGNDAK----KTSLYDSSSDSWIPGPD---------- 282 (656)
T ss_dssp EEEEECTTTCCBCCCEE---EECSCCCSSCEEEECTTSCEEEECSSSTT----CEEEEEGGGTEEEECCC----------
T ss_pred EEEEEeCCCCcEEeCcc---cCCCCCCccccccCCCCCCEEEeCCCCCC----ceEEecCcCCceeECCC----------
Confidence 455664 9998874 667776665 333 48999999996543 79999999999999854
Q ss_pred CCCCCCCCccceeEEe-CCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCC--CCCCC-------------------
Q 008611 239 SPALLTPCAGHSLIPW-ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYG--KPPVS------------------- 296 (559)
Q Consensus 239 ~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g--~~p~~------------------- 296 (559)
+|.+|.+|+++.+ +++|||+||........+++++||+.+++|+.++..+ +++..
T Consensus 283 ---~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~ 359 (656)
T 1k3i_A 283 ---MQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKK 359 (656)
T ss_dssp ---CSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGG
T ss_pred ---CCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCC
Confidence 4689999999999 9999999996444457889999999999999973211 11111
Q ss_pred --------------------------------------ccceEEEE---ECCEEEEEcCcCC--CCCCcC---ceEEEEC
Q 008611 297 --------------------------------------RGGQSVTL---VGTSLVIFGGEDA--KRSLLN---DLHILDL 330 (559)
Q Consensus 297 --------------------------------------r~~~~~~~---~~~~lyv~GG~~~--~~~~~~---~~~~yd~ 330 (559)
+..++++. .+++||+|||.+. ....++ .+++||+
T Consensus 360 g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~ 439 (656)
T 1k3i_A 360 GSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEP 439 (656)
T ss_dssp GCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCST
T ss_pred CcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCC
Confidence 12334443 4789999999743 112344 7899999
Q ss_pred CCCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCC------CCCcCceEEEECCCCeeEeccCCCCCCCCccccEE
Q 008611 331 ETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSH------AACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAG 404 (559)
Q Consensus 331 ~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~------~~~~~dv~~~d~~~~~W~~~~~~~~~p~~R~~hs~ 404 (559)
.+++|..+. .+.+|.+|..|+++++.+++|||+||... ...++++++||+.+++|..+ +.++.+|.+|++
T Consensus 440 ~~~~W~~~~-~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~---~~~~~~R~~hs~ 515 (656)
T 1k3i_A 440 GTSPNTVFA-SNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQ---NPNSIVRVYHSI 515 (656)
T ss_dssp TSCCEEEEC-TTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEEC---CCCSSCCCTTEE
T ss_pred CCCCeeEEc-cCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeec---CCCCCccccccH
Confidence 999999986 23568999999999986778999999652 34578999999999999998 578899999998
Q ss_pred EEE--CCceecceeeeeeccCCCcEEEEEcCcC-CC---CcccEEEEeC
Q 008611 405 VTI--GENWFLGLSLVVSSYSGEDVIVAFGGYN-GR---YNNEVHVLKP 447 (559)
Q Consensus 405 ~~~--~~~~~iG~s~~~~~~~~~~~l~v~GG~~-~~---~~~~v~~~d~ 447 (559)
+++ ++ +||++||.. +. ...++.+|.|
T Consensus 516 a~ll~dg-----------------~v~v~GG~~~~~~~~~~~~~e~~~P 547 (656)
T 1k3i_A 516 SLLLPDG-----------------RVFNGGGGLCGDCTTNHFDAQIFTP 547 (656)
T ss_dssp EEECTTS-----------------CEEEEECCCCTTCSCCCCEEEEEEC
T ss_pred hhcCCCc-----------------EEEecCCCCCCCCCCCeeEEEEEeC
Confidence 877 44 899999952 22 2335566665
No 29
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.00 E-value=0.0015 Score=61.68 Aligned_cols=160 Identities=16% Similarity=0.146 Sum_probs=105.8
Q ss_pred cceeEEEECCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCC
Q 008611 187 YEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTK 266 (559)
Q Consensus 187 ~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~ 266 (559)
+-+.+...++.||+-.|..+ .+.+.++|+.+++-...... +...++.+++..+++||+....
T Consensus 22 ftqGL~~~~~~LyestG~~g---~S~v~~vD~~tgkv~~~~~l-------------~~~~fgeGi~~~~~~ly~ltw~-- 83 (243)
T 3mbr_X 22 FTEGLFYLRGHLYESTGETG---RSSVRKVDLETGRILQRAEV-------------PPPYFGAGIVAWRDRLIQLTWR-- 83 (243)
T ss_dssp CEEEEEEETTEEEEEECCTT---SCEEEEEETTTCCEEEEEEC-------------CTTCCEEEEEEETTEEEEEESS--
T ss_pred ccccEEEECCEEEEECCCCC---CceEEEEECCCCCEEEEEeC-------------CCCcceeEEEEeCCEEEEEEee--
Confidence 44467778999999998543 25789999999987655432 4555778888889999998643
Q ss_pred CCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCC
Q 008611 267 DPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPS 346 (559)
Q Consensus 267 ~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~ 346 (559)
.+.+++||+.+.+-..-- |.+..+.+++.-+++||+.-| .+.++.+|+.|.+-..--..+..+.
T Consensus 84 ----~~~v~v~D~~tl~~~~ti-----~~~~~Gwglt~dg~~L~vSdg-------s~~l~~iDp~t~~~~~~I~V~~~g~ 147 (243)
T 3mbr_X 84 ----NHEGFVYDLATLTPRARF-----RYPGEGWALTSDDSHLYMSDG-------TAVIRKLDPDTLQQVGSIKVTAGGR 147 (243)
T ss_dssp ----SSEEEEEETTTTEEEEEE-----ECSSCCCEEEECSSCEEEECS-------SSEEEEECTTTCCEEEEEECEETTE
T ss_pred ----CCEEEEEECCcCcEEEEE-----eCCCCceEEeeCCCEEEEECC-------CCeEEEEeCCCCeEEEEEEEccCCc
Confidence 467999999998744322 122356677766778999755 3569999999876543222111222
Q ss_pred cccc-cEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCee
Q 008611 347 PRSD-HAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEW 386 (559)
Q Consensus 347 ~r~~-~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W 386 (559)
+... --+..+ ++.||+---. .++|.+.|+.+.+-
T Consensus 148 ~~~~lNeLe~~-~G~lyanvw~-----s~~I~vIDp~tG~V 182 (243)
T 3mbr_X 148 PLDNLNELEWV-NGELLANVWL-----TSRIARIDPASGKV 182 (243)
T ss_dssp ECCCEEEEEEE-TTEEEEEETT-----TTEEEEECTTTCBE
T ss_pred ccccceeeEEe-CCEEEEEECC-----CCeEEEEECCCCCE
Confidence 2211 123333 6667754322 46899999998864
No 30
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=97.92 E-value=0.0054 Score=60.89 Aligned_cols=208 Identities=9% Similarity=0.034 Sum_probs=121.6
Q ss_pred CCcccceeEEEECCEEEEEccCCCCcccCcEEEEEcCCCeEE-EeeeccccCCCCCCCCCCCCCCccceeEE-eCCEEEE
Q 008611 183 PKARYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWS-KIQAKAVAESTESPSPALLTPCAGHSLIP-WENKLLS 260 (559)
Q Consensus 183 p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~-~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~~~~lyv 260 (559)
+.+...+.++..++++|+... ..+.+.++|+.+++-. .++. ....+.++. -++++|+
T Consensus 41 ~lg~~~~~i~~~~~~lyv~~~-----~~~~v~viD~~t~~~~~~i~~----------------~~~p~~i~~~~~g~lyv 99 (328)
T 3dsm_A 41 KLGDVAQSMVIRDGIGWIVVN-----NSHVIFAIDINTFKEVGRITG----------------FTSPRYIHFLSDEKAYV 99 (328)
T ss_dssp CCBSCEEEEEEETTEEEEEEG-----GGTEEEEEETTTCCEEEEEEC----------------CSSEEEEEEEETTEEEE
T ss_pred ccCccceEEEEECCEEEEEEc-----CCCEEEEEECcccEEEEEcCC----------------CCCCcEEEEeCCCeEEE
Confidence 444555667778999999975 2367999999998763 3321 111223333 5789999
Q ss_pred EeccCCCCCCcceEEEEECCCCeEEEeccCCCCC-CCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCCceEEec
Q 008611 261 IAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPP-VSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEID 339 (559)
Q Consensus 261 ~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p-~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~ 339 (559)
.... .+.+.++|+.+++-...-..+... ....-..++..+++||+..-. ..+.+.++|+.+.+....-
T Consensus 100 ~~~~------~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~-----~~~~v~viD~~t~~~~~~i 168 (328)
T 3dsm_A 100 TQIW------DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWS-----YQNRILKIDTETDKVVDEL 168 (328)
T ss_dssp EEBS------CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECT-----TCCEEEEEETTTTEEEEEE
T ss_pred EECC------CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCC-----CCCEEEEEECCCCeEEEEE
Confidence 8743 357999999998755322222210 000122344478899998520 1356999999998765432
Q ss_pred CCCCCCCcccccEEEEEcCCEEEEEcCCCCC-CC----cCceEEEECCCCeeEeccCCCCCCCCccccEEEEECCceecc
Q 008611 340 AVGVPPSPRSDHAAAVHAERYLLIFGGGSHA-AC----FNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLG 414 (559)
Q Consensus 340 ~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~-~~----~~dv~~~d~~~~~W~~~~~~~~~p~~R~~hs~~~~~~~~~iG 414 (559)
..+. .| +.+++..++.+|+....... .. .+.++++|+.+.+....- ..+.....+.+++-.+
T Consensus 169 ~~g~--~p---~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~---~~~~g~~p~~la~~~d----- 235 (328)
T 3dsm_A 169 TIGI--QP---TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQF---KFKLGDWPSEVQLNGT----- 235 (328)
T ss_dssp ECSS--CB---CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEE---ECCTTCCCEEEEECTT-----
T ss_pred EcCC--Cc---cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEE---ecCCCCCceeEEEecC-----
Confidence 2222 22 34455556778777532211 11 267999999988765321 1121222223333211
Q ss_pred eeeeeeccCCCcEEEEEcCcCCCCcccEEEEeCCCcce
Q 008611 415 LSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSHKST 452 (559)
Q Consensus 415 ~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~~d~~~~~~ 452 (559)
+..||+..+ .|+++|+.+...
T Consensus 236 ----------~~~lyv~~~-------~v~~~d~~t~~~ 256 (328)
T 3dsm_A 236 ----------RDTLYWINN-------DIWRMPVEADRV 256 (328)
T ss_dssp ----------SCEEEEESS-------SEEEEETTCSSC
T ss_pred ----------CCEEEEEcc-------EEEEEECCCCce
Confidence 447888653 799999987754
No 31
>1mix_A Talin; focal adhesion, integrin binding, FERM domain, cytoskeleton, structural protein; 1.75A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 PDB: 1miz_B 1mk7_B 1mk9_B 1y19_B 3g9w_A 2hrj_A 2g35_A* 2k00_A 2h7d_A* 2h7e_A* 2kgx_B
Probab=97.72 E-value=5e-05 Score=70.59 Aligned_cols=70 Identities=24% Similarity=0.221 Sum_probs=59.5
Q ss_pred ccCCCChhhHHHHhhheeeeecCCCCCC--CCCCCChh------------hhhhHHHHhcCCCCCHHHHHHHHHHHHHHh
Q 008611 36 LTSKFSNDSALLLYALYQQATVGPCNVP--KPSSWSPV------------EQSKWKSWQGLGNMATTEAMRLFVKILEEE 101 (559)
Q Consensus 36 ~~~~~~~~~~l~ly~l~kqa~~g~~~~~--~p~~~~~~------------~~~k~~aw~~~~~~s~~~a~~~yv~~~~~~ 101 (559)
+.-..+.++.++|.||..||..||++.. .|+.+++. .+.-+++|+++.|||++|||.+|++++.++
T Consensus 32 g~~~~~~~~a~~Laal~~qa~~Gd~~~~~~~~~~~~~~~~lP~~~~~~~~~~~i~~~~~~~~g~s~~~A~~~yL~~~~~l 111 (206)
T 1mix_A 32 GSHPVSFDKACEFAGYQCQIQFGPHNEQKHKPGFLELKDFLPKEYIKQKGERKIFMAHKNCGNMSEIEAKVRYVKLARSL 111 (206)
T ss_dssp TSSCCCHHHHHHHHHHHHHHHHCSCCTTTSCTTCSCGGGTSCGGGSTTCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHS
T ss_pred CccccCHHHHHHHHHHhhhheecCCCcccccCCccchHhhCCHHHhhcccHHHHHHHHHHccCCCHHHHHHHHHHHHHhC
Confidence 4567899999999999999999999875 46666544 677899999999999999999999999876
Q ss_pred CCCcc
Q 008611 102 DPGWY 106 (559)
Q Consensus 102 ~~~~~ 106 (559)
|.|.
T Consensus 112 -~~yG 115 (206)
T 1mix_A 112 -KTYG 115 (206)
T ss_dssp -TTTT
T ss_pred -cccC
Confidence 5553
No 32
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.63 E-value=0.0084 Score=57.15 Aligned_cols=158 Identities=15% Similarity=0.094 Sum_probs=101.7
Q ss_pred eeEEEECCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCCC
Q 008611 189 HGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDP 268 (559)
Q Consensus 189 ~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~ 268 (559)
..+...++.||+..|..+ .+.+.++|+.+++-..--+. +...++.+++..+++||+....
T Consensus 46 qGL~~~~~~LyestG~~g---~S~v~~vD~~Tgkv~~~~~l-------------~~~~FgeGit~~g~~ly~ltw~---- 105 (262)
T 3nol_A 46 EGFFYRNGYFYESTGLNG---RSSIRKVDIESGKTLQQIEL-------------GKRYFGEGISDWKDKIVGLTWK---- 105 (262)
T ss_dssp EEEEEETTEEEEEEEETT---EEEEEEECTTTCCEEEEEEC-------------CTTCCEEEEEEETTEEEEEESS----
T ss_pred ceEEEECCEEEEECCCCC---CceEEEEECCCCcEEEEEec-------------CCccceeEEEEeCCEEEEEEee----
Confidence 455556899999998443 25789999999886554332 3455667788889999998543
Q ss_pred CCcceEEEEECCCCeEEE-eccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCCceEE-ecCCCCCCC
Q 008611 269 SEIIQVKVFDLQTCSWST-LKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDE-IDAVGVPPS 346 (559)
Q Consensus 269 ~~~~~v~~yd~~t~~W~~-~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~p~ 346 (559)
.+.+++||+.+.+-.. ++. +-.+.+++.-++.||+.-| .+.++.+|+.|.+-.. +... ..+.
T Consensus 106 --~~~v~v~D~~t~~~~~ti~~------~~eG~glt~dg~~L~~SdG-------s~~i~~iDp~T~~v~~~I~V~-~~g~ 169 (262)
T 3nol_A 106 --NGLGFVWNIRNLRQVRSFNY------DGEGWGLTHNDQYLIMSDG-------TPVLRFLDPESLTPVRTITVT-AHGE 169 (262)
T ss_dssp --SSEEEEEETTTCCEEEEEEC------SSCCCCEEECSSCEEECCS-------SSEEEEECTTTCSEEEEEECE-ETTE
T ss_pred --CCEEEEEECccCcEEEEEEC------CCCceEEecCCCEEEEECC-------CCeEEEEcCCCCeEEEEEEec-cCCc
Confidence 4579999999877443 321 2255667666778888654 3569999999876543 3221 1111
Q ss_pred cccc-cEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEe
Q 008611 347 PRSD-HAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSR 388 (559)
Q Consensus 347 ~r~~-~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~ 388 (559)
+... -.+... ++.||+--- ..++|.+.|+.+.+-..
T Consensus 170 ~~~~lNELe~~-~G~lyan~w-----~~~~I~vIDp~tG~V~~ 206 (262)
T 3nol_A 170 ELPELNELEWV-DGEIFANVW-----QTNKIVRIDPETGKVTG 206 (262)
T ss_dssp ECCCEEEEEEE-TTEEEEEET-----TSSEEEEECTTTCBEEE
T ss_pred cccccceeEEE-CCEEEEEEc-----cCCeEEEEECCCCcEEE
Confidence 1111 123344 667875431 14689999999986433
No 33
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=97.55 E-value=0.033 Score=55.04 Aligned_cols=207 Identities=10% Similarity=0.008 Sum_probs=114.0
Q ss_pred eEEE-ECCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCCC
Q 008611 190 GAAV-VQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDP 268 (559)
Q Consensus 190 ~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~ 268 (559)
.++. .+++||+.... .+.+.++|+.+++-...-..+. .. .....-+.++..+++|||..-
T Consensus 88 ~i~~~~~g~lyv~~~~-----~~~v~~iD~~t~~~~~~i~~g~--------~~-~~~~~p~~i~~~~~~lyv~~~----- 148 (328)
T 3dsm_A 88 YIHFLSDEKAYVTQIW-----DYRIFIINPKTYEITGYIECPD--------MD-MESGSTEQMVQYGKYVYVNCW----- 148 (328)
T ss_dssp EEEEEETTEEEEEEBS-----CSEEEEEETTTTEEEEEEECTT--------CC-TTTCBCCCEEEETTEEEEEEC-----
T ss_pred EEEEeCCCeEEEEECC-----CCeEEEEECCCCeEEEEEEcCC--------cc-ccCCCcceEEEECCEEEEEcC-----
Confidence 3444 67899998742 3679999999987653322210 00 000012234447889999842
Q ss_pred CCcceEEEEECCCCeEEEeccCCCCCCCccceEEEE-ECCEEEEEcCcCCCCCC----cCceEEEECCCCceEEecCCCC
Q 008611 269 SEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTL-VGTSLVIFGGEDAKRSL----LNDLHILDLETMTWDEIDAVGV 343 (559)
Q Consensus 269 ~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~----~~~~~~yd~~t~~W~~~~~~~~ 343 (559)
...+.+.++|+.+++....-..+..| +.++. -++++|+....+..... .+.++++|+.+.+....-..
T Consensus 149 ~~~~~v~viD~~t~~~~~~i~~g~~p-----~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~-- 221 (328)
T 3dsm_A 149 SYQNRILKIDTETDKVVDELTIGIQP-----TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKF-- 221 (328)
T ss_dssp TTCCEEEEEETTTTEEEEEEECSSCB-----CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEEC--
T ss_pred CCCCEEEEEECCCCeEEEEEEcCCCc-----cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEec--
Confidence 12357999999998865443222222 22222 25688877533211111 26799999998876533222
Q ss_pred CCCcccccEEEEEc-CCEEEEEcCCCCCCCcCceEEEECCCCeeEeccCCCCCCC-CccccEEEEECCceecceeeeeec
Q 008611 344 PPSPRSDHAAAVHA-ERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPT-PRAGHAGVTIGENWFLGLSLVVSS 421 (559)
Q Consensus 344 ~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~~~~~~~p~-~R~~hs~~~~~~~~~iG~s~~~~~ 421 (559)
|....-..+++.. ++.||+..+ .+++||+.+.+..... ..+. .....+++ ++.
T Consensus 222 -~~g~~p~~la~~~d~~~lyv~~~--------~v~~~d~~t~~~~~~~---~~~~~~~~p~gi~-vdp------------ 276 (328)
T 3dsm_A 222 -KLGDWPSEVQLNGTRDTLYWINN--------DIWRMPVEADRVPVRP---FLEFRDTKYYGLT-VNP------------ 276 (328)
T ss_dssp -CTTCCCEEEEECTTSCEEEEESS--------SEEEEETTCSSCCSSC---SBCCCSSCEEEEE-ECT------------
T ss_pred -CCCCCceeEEEecCCCEEEEEcc--------EEEEEECCCCceeeee---eecCCCCceEEEE-EcC------------
Confidence 2222234455543 567888654 6899999887653211 1111 12222222 221
Q ss_pred cCCCcEEEEEcCcCCCCcccEEEEeCCC
Q 008611 422 YSGEDVIVAFGGYNGRYNNEVHVLKPSH 449 (559)
Q Consensus 422 ~~~~~~l~v~GG~~~~~~~~v~~~d~~~ 449 (559)
. ++.||+....+-...+.|.+||+..
T Consensus 277 ~--~g~lyva~~~~y~~~~~V~v~d~~g 302 (328)
T 3dsm_A 277 N--NGEVYVADAIDYQQQGIVYRYSPQG 302 (328)
T ss_dssp T--TCCEEEEECTTSSSEEEEEEECTTC
T ss_pred C--CCeEEEEcccccccCCEEEEECCCC
Confidence 1 3478887632222457899999883
No 34
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.51 E-value=0.008 Score=57.36 Aligned_cols=156 Identities=13% Similarity=0.015 Sum_probs=100.4
Q ss_pred ceeEEEECCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCC
Q 008611 188 EHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKD 267 (559)
Q Consensus 188 ~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~ 267 (559)
-..+...++.||+..|..+. +.++|+.+++-..-- . +...++.+++..+++||+....
T Consensus 57 tqGL~~~~~~Ly~stG~~g~-----v~~iD~~Tgkv~~~~-l-------------~~~~FgeGit~~g~~Ly~ltw~--- 114 (268)
T 3nok_A 57 TQGLVFHQGHFFESTGHQGT-----LRQLSLESAQPVWME-R-------------LGNIFAEGLASDGERLYQLTWT--- 114 (268)
T ss_dssp EEEEEEETTEEEEEETTTTE-----EEECCSSCSSCSEEE-E-------------CTTCCEEEEEECSSCEEEEESS---
T ss_pred cceEEEECCEEEEEcCCCCE-----EEEEECCCCcEEeEE-C-------------CCCcceeEEEEeCCEEEEEEcc---
Confidence 35666679999999995432 899999998754332 2 2344667788889999998543
Q ss_pred CCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCc
Q 008611 268 PSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSP 347 (559)
Q Consensus 268 ~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~ 347 (559)
.+.+++||+.+.+-..--+ .+-.+.+++.-+.+||+.-| .+.++.+|+.|.+-..--..+..+.+
T Consensus 115 ---~~~v~V~D~~Tl~~~~ti~-----~~~eGwGLt~Dg~~L~vSdG-------s~~l~~iDp~T~~v~~~I~V~~~g~~ 179 (268)
T 3nok_A 115 ---EGLLFTWSGMPPQRERTTR-----YSGEGWGLCYWNGKLVRSDG-------GTMLTFHEPDGFALVGAVQVKLRGQP 179 (268)
T ss_dssp ---SCEEEEEETTTTEEEEEEE-----CSSCCCCEEEETTEEEEECS-------SSEEEEECTTTCCEEEEEECEETTEE
T ss_pred ---CCEEEEEECCcCcEEEEEe-----CCCceeEEecCCCEEEEECC-------CCEEEEEcCCCCeEEEEEEeCCCCcc
Confidence 4579999999987543221 12235667777889999865 35699999998765432211111222
Q ss_pred ccc-cEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCee
Q 008611 348 RSD-HAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEW 386 (559)
Q Consensus 348 r~~-~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W 386 (559)
... -.+... ++.||+-- + ..++|.++|+.+.+-
T Consensus 180 v~~lNeLe~~-dG~lyanv-w----~s~~I~vIDp~TG~V 213 (268)
T 3nok_A 180 VELINELECA-NGVIYANI-W----HSSDVLEIDPATGTV 213 (268)
T ss_dssp CCCEEEEEEE-TTEEEEEE-T----TCSEEEEECTTTCBE
T ss_pred cccccccEEe-CCEEEEEE-C----CCCeEEEEeCCCCcE
Confidence 211 123333 56677532 1 146899999998854
No 35
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.49 E-value=0.036 Score=53.14 Aligned_cols=159 Identities=14% Similarity=-0.011 Sum_probs=98.8
Q ss_pred eeEEEEC-CEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCC
Q 008611 189 HGAAVVQ-DKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKD 267 (559)
Q Consensus 189 ~~~~~~~-~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~ 267 (559)
+.++..+ +.||+..|..+ .+.+.++|+.+++=...-+. +...++.+++..++.||+..-
T Consensus 24 ~Gl~~~~dg~Lyvstg~~~---~s~v~~iD~~tg~v~~~i~l-------------~~~~fgeGi~~~g~~lyv~t~---- 83 (266)
T 2iwa_A 24 QGLVYAENDTLFESTGLYG---RSSVRQVALQTGKVENIHKM-------------DDSYFGEGLTLLNEKLYQVVW---- 83 (266)
T ss_dssp EEEEECSTTEEEEEECSTT---TCEEEEEETTTCCEEEEEEC-------------CTTCCEEEEEEETTEEEEEET----
T ss_pred ccEEEeCCCeEEEECCCCC---CCEEEEEECCCCCEEEEEec-------------CCCcceEEEEEeCCEEEEEEe----
Confidence 5566555 79999877322 36799999999886544322 234455677777889999854
Q ss_pred CCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCc
Q 008611 268 PSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSP 347 (559)
Q Consensus 268 ~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~ 347 (559)
..+.+++||+.+.+=..--+.| .| .+.+++.-++++|+.-| .+.++.+|+.+.+-..--..+..+.+
T Consensus 84 --~~~~v~viD~~t~~v~~~i~~g-~~---~g~glt~Dg~~l~vs~g-------s~~l~viD~~t~~v~~~I~Vg~~~~p 150 (266)
T 2iwa_A 84 --LKNIGFIYDRRTLSNIKNFTHQ-MK---DGWGLATDGKILYGSDG-------TSILYEIDPHTFKLIKKHNVKYNGHR 150 (266)
T ss_dssp --TCSEEEEEETTTTEEEEEEECC-SS---SCCEEEECSSSEEEECS-------SSEEEEECTTTCCEEEEEECEETTEE
T ss_pred --cCCEEEEEECCCCcEEEEEECC-CC---CeEEEEECCCEEEEECC-------CCeEEEEECCCCcEEEEEEECCCCcc
Confidence 3467999999987633222222 22 23445555678998754 35799999998765432222211222
Q ss_pred cc-ccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCee
Q 008611 348 RS-DHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEW 386 (559)
Q Consensus 348 r~-~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W 386 (559)
.. -..+... ++.||+--.. .++|.+.|+.+.+-
T Consensus 151 ~~~~nele~~-dg~lyvn~~~-----~~~V~vID~~tg~V 184 (266)
T 2iwa_A 151 VIRLNELEYI-NGEVWANIWQ-----TDCIARISAKDGTL 184 (266)
T ss_dssp CCCEEEEEEE-TTEEEEEETT-----SSEEEEEETTTCCE
T ss_pred cccceeEEEE-CCEEEEecCC-----CCeEEEEECCCCcE
Confidence 11 1233444 6678865432 36899999998753
No 36
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.09 E-value=0.061 Score=50.66 Aligned_cols=118 Identities=19% Similarity=0.153 Sum_probs=82.0
Q ss_pred CCCccceeEEeCCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcC
Q 008611 244 TPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLN 323 (559)
Q Consensus 244 ~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~ 323 (559)
..-+-+++...++.||+-.|..+. +.+..+|+.+++=..-. ++|..-.+.+++..+++||+.... .+
T Consensus 19 ~~~ftqGL~~~~~~LyestG~~g~----S~v~~vD~~tgkv~~~~---~l~~~~fgeGi~~~~~~ly~ltw~------~~ 85 (243)
T 3mbr_X 19 TTAFTEGLFYLRGHLYESTGETGR----SSVRKVDLETGRILQRA---EVPPPYFGAGIVAWRDRLIQLTWR------NH 85 (243)
T ss_dssp TTCCEEEEEEETTEEEEEECCTTS----CEEEEEETTTCCEEEEE---ECCTTCCEEEEEEETTEEEEEESS------SS
T ss_pred CccccccEEEECCEEEEECCCCCC----ceEEEEECCCCCEEEEE---eCCCCcceeEEEEeCCEEEEEEee------CC
Confidence 344455777778999999887543 67999999999765443 355555677788889999998653 46
Q ss_pred ceEEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCee
Q 008611 324 DLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEW 386 (559)
Q Consensus 324 ~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W 386 (559)
.+++||+.+.+-..-- |.+..+.+++. .++.||+.-| .+.++.+|+.+.+-
T Consensus 86 ~v~v~D~~tl~~~~ti-----~~~~~Gwglt~-dg~~L~vSdg------s~~l~~iDp~t~~~ 136 (243)
T 3mbr_X 86 EGFVYDLATLTPRARF-----RYPGEGWALTS-DDSHLYMSDG------TAVIRKLDPDTLQQ 136 (243)
T ss_dssp EEEEEETTTTEEEEEE-----ECSSCCCEEEE-CSSCEEEECS------SSEEEEECTTTCCE
T ss_pred EEEEEECCcCcEEEEE-----eCCCCceEEee-CCCEEEEECC------CCeEEEEeCCCCeE
Confidence 7999999886654321 12223455553 4566888765 25799999998754
No 37
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=96.87 E-value=0.21 Score=51.18 Aligned_cols=160 Identities=18% Similarity=0.238 Sum_probs=82.6
Q ss_pred eEEeCCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEEC
Q 008611 251 LIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDL 330 (559)
Q Consensus 251 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~ 330 (559)
++.+++..++.|+.++ .+..||+.+.+-...-. + ......+...++.+++.|+.+ +.+.+||+
T Consensus 284 ~~~~~~~~l~~~~~d~------~i~i~d~~~~~~~~~~~-~----~~~~v~~~~~~~~~l~~~~~d------g~i~vwd~ 346 (445)
T 2ovr_B 284 SLQFDGIHVVSGSLDT------SIRVWDVETGNCIHTLT-G----HQSLTSGMELKDNILVSGNAD------STVKIWDI 346 (445)
T ss_dssp EEEECSSEEEEEETTS------CEEEEETTTCCEEEEEC-C----CCSCEEEEEEETTEEEEEETT------SCEEEEET
T ss_pred EEEECCCEEEEEeCCC------eEEEEECCCCCEEEEEc-C----CcccEEEEEEeCCEEEEEeCC------CeEEEEEC
Confidence 3344777777777643 48889988776433211 1 111122233445566667653 34889998
Q ss_pred CCCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEeccCCCCCCCCccccEEEEECCc
Q 008611 331 ETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGEN 410 (559)
Q Consensus 331 ~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~~~~~~~p~~R~~hs~~~~~~~ 410 (559)
.+.+-...-.. ..........+.+.++ +++.|+.+ ..+.+||+.+.+....-. .. ....|...+.
T Consensus 347 ~~~~~~~~~~~--~~~~~~~v~~~~~~~~-~l~s~~~d-----g~v~iwd~~~~~~~~~~~--~~--~~~~~~~~v~--- 411 (445)
T 2ovr_B 347 KTGQCLQTLQG--PNKHQSAVTCLQFNKN-FVITSSDD-----GTVKLWDLKTGEFIRNLV--TL--ESGGSGGVVW--- 411 (445)
T ss_dssp TTCCEEEEECS--TTSCSSCEEEEEECSS-EEEEEETT-----SEEEEEETTTCCEEEEEE--EC--TTGGGTCEEE---
T ss_pred CCCcEEEEEcc--CCCCCCCEEEEEECCC-EEEEEeCC-----CeEEEEECCCCceeeeee--cc--ccCCCCceEE---
Confidence 77654322111 0011111222333444 66777643 458899998876443210 00 0011111111
Q ss_pred eecceeeeeeccCCCcEEEEEcCcCCCCcccEEEEeCCCc
Q 008611 411 WFLGLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSHK 450 (559)
Q Consensus 411 ~~iG~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~~d~~~~ 450 (559)
....+..+.++++|+.+|.....+++||...+
T Consensus 412 --------~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 412 --------RIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp --------EEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred --------EEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 01112244788899988876677888887643
No 38
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=96.67 E-value=0.12 Score=51.79 Aligned_cols=147 Identities=14% Similarity=0.158 Sum_probs=83.0
Q ss_pred CEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe-CC-EEEEEeccCCCCCCcce
Q 008611 196 DKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-EN-KLLSIAGHTKDPSEIIQ 273 (559)
Q Consensus 196 ~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~ 273 (559)
+.+|+.|+.+ +.+.++|+.+++-...-... . .-++++.. ++ .||+.|+.+ ..
T Consensus 2 ~~l~vs~~~d-----~~v~v~d~~~~~~~~~~~~~-------------~--~~~~~~~s~dg~~l~~~~~~d------~~ 55 (391)
T 1l0q_A 2 TFAYIANSES-----DNISVIDVTSNKVTATIPVG-------------S--NPMGAVISPDGTKVYVANAHS------ND 55 (391)
T ss_dssp EEEEEEETTT-----TEEEEEETTTTEEEEEEECS-------------S--SEEEEEECTTSSEEEEEEGGG------TE
T ss_pred CEEEEEcCCC-----CEEEEEECCCCeEEEEeecC-------------C--CcceEEECCCCCEEEEECCCC------Ce
Confidence 4577777632 46899999988655432211 1 11222222 34 577777553 36
Q ss_pred EEEEECCCCeEEEeccCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCccccc
Q 008611 274 VKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDH 351 (559)
Q Consensus 274 v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~ 351 (559)
+.++|+.+++....-.. +. .-.+++.. +..||+.|.. .+.+.+||+.+.+....... ...-.
T Consensus 56 i~v~d~~~~~~~~~~~~---~~--~v~~~~~spdg~~l~~~~~~------~~~v~v~d~~~~~~~~~~~~-----~~~~~ 119 (391)
T 1l0q_A 56 VSIIDTATNNVIATVPA---GS--SPQGVAVSPDGKQVYVTNMA------SSTLSVIDTTSNTVAGTVKT-----GKSPL 119 (391)
T ss_dssp EEEEETTTTEEEEEEEC---SS--SEEEEEECTTSSEEEEEETT------TTEEEEEETTTTEEEEEEEC-----SSSEE
T ss_pred EEEEECCCCeEEEEEEC---CC--CccceEECCCCCEEEEEECC------CCEEEEEECCCCeEEEEEeC-----CCCcc
Confidence 99999998876554321 11 12223332 3356666543 24599999998876544322 11223
Q ss_pred EEEEEcC-CEEEEEcCCCCCCCcCceEEEECCCCeeEec
Q 008611 352 AAAVHAE-RYLLIFGGGSHAACFNDLHVLDLQTMEWSRP 389 (559)
Q Consensus 352 ~~~~~~~-~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~ 389 (559)
++++..+ +.||+.++.+ +.+++||+.+.+....
T Consensus 120 ~~~~s~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~ 153 (391)
T 1l0q_A 120 GLALSPDGKKLYVTNNGD-----KTVSVINTVTKAVINT 153 (391)
T ss_dssp EEEECTTSSEEEEEETTT-----TEEEEEETTTTEEEEE
T ss_pred eEEECCCCCEEEEEeCCC-----CEEEEEECCCCcEEEE
Confidence 4444444 4576776543 4699999988766543
No 39
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=96.49 E-value=0.14 Score=52.37 Aligned_cols=197 Identities=12% Similarity=0.105 Sum_probs=104.8
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe--CCE-EEEEeccCCCCCCc
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENK-LLSIAGHTKDPSEI 271 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~-lyv~GG~~~~~~~~ 271 (559)
+++.+++++.+++ ...++++|+.+++...+... .. ....+.+ +++ |++.+..+. .
T Consensus 189 dg~~la~~s~~~~--~~~i~~~d~~tg~~~~l~~~--------------~~--~~~~~~~spdg~~la~~~~~~g----~ 246 (415)
T 2hqs_A 189 DGSKLAYVTFESG--RSALVIQTLANGAVRQVASF--------------PR--HNGAPAFSPDGSKLAFALSKTG----S 246 (415)
T ss_dssp TSSEEEEEECTTS--SCEEEEEETTTCCEEEEECC--------------SS--CEEEEEECTTSSEEEEEECTTS----S
T ss_pred CCCEEEEEEecCC--CcEEEEEECCCCcEEEeecC--------------CC--cccCEEEcCCCCEEEEEEecCC----C
Confidence 4555555554332 25799999999887765321 11 1222333 454 554544322 3
Q ss_pred ceEEEEECCCCeEEEeccCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccc
Q 008611 272 IQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSD 350 (559)
Q Consensus 272 ~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~ 350 (559)
..++.+|+.+.+...+... + . .....+.. +++.+++++.... ...++.+|+.+..-..+... ....
T Consensus 247 ~~i~~~d~~~~~~~~l~~~---~-~-~~~~~~~spdg~~l~~~s~~~g---~~~i~~~d~~~~~~~~l~~~-----~~~~ 313 (415)
T 2hqs_A 247 LNLYVMDLASGQIRQVTDG---R-S-NNTEPTWFPDSQNLAFTSDQAG---RPQVYKVNINGGAPQRITWE-----GSQN 313 (415)
T ss_dssp CEEEEEETTTCCEEECCCC---S-S-CEEEEEECTTSSEEEEEECTTS---SCEEEEEETTSSCCEECCCS-----SSEE
T ss_pred ceEEEEECCCCCEEeCcCC---C-C-cccceEECCCCCEEEEEECCCC---CcEEEEEECCCCCEEEEecC-----CCcc
Confidence 5799999999887666421 1 1 11122222 4554555443221 24699999988776554321 2222
Q ss_pred cEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEeccCCCCCCCCccccEEEEECCceecceeeeeeccCCCcEEEE
Q 008611 351 HAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVA 430 (559)
Q Consensus 351 ~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~~~~~~~p~~R~~hs~~~~~~~~~iG~s~~~~~~~~~~~l~v 430 (559)
.+++...++..+++++...+ ...++++|+.+.....+... . ....+.+.. .+..++
T Consensus 314 ~~~~~spdG~~l~~~~~~~g--~~~i~~~d~~~~~~~~l~~~-----~--~~~~~~~sp---------------dg~~l~ 369 (415)
T 2hqs_A 314 QDADVSSDGKFMVMVSSNGG--QQHIAKQDLATGGVQVLSST-----F--LDETPSLAP---------------NGTMVI 369 (415)
T ss_dssp EEEEECTTSSEEEEEEECSS--CEEEEEEETTTCCEEECCCS-----S--SCEEEEECT---------------TSSEEE
T ss_pred cCeEECCCCCEEEEEECcCC--ceEEEEEECCCCCEEEecCC-----C--CcCCeEEcC---------------CCCEEE
Confidence 33444445545555543221 34699999999887665311 1 222233321 224555
Q ss_pred EcCcCCCCcccEEEEeCCCcc
Q 008611 431 FGGYNGRYNNEVHVLKPSHKS 451 (559)
Q Consensus 431 ~GG~~~~~~~~v~~~d~~~~~ 451 (559)
+++.++. ...++++|+....
T Consensus 370 ~~s~~~~-~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 370 YSSSQGM-GSVLNLVSTDGRF 389 (415)
T ss_dssp EEEEETT-EEEEEEEETTSCC
T ss_pred EEEcCCC-ccEEEEEECCCCc
Confidence 6554332 3478999987654
No 40
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=96.39 E-value=0.71 Score=44.95 Aligned_cols=158 Identities=9% Similarity=-0.033 Sum_probs=82.2
Q ss_pred CCEEEEEccCCC-CcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeC-CEEEEEeccCCCCCCcc
Q 008611 195 QDKMYIYGGNHN-GRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWE-NKLLSIAGHTKDPSEII 272 (559)
Q Consensus 195 ~~~lyv~GG~~~-~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~ 272 (559)
++.||+...... ....+.++++|+.+++....-... ......+..-+ +.+|+.++.. .
T Consensus 52 g~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~--------------~~~~~~~~s~dg~~l~v~~~~~------~ 111 (353)
T 3vgz_A 52 ENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND--------------LKPFGATINNTTQTLWFGNTVN------S 111 (353)
T ss_dssp TTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES--------------SCCCSEEEETTTTEEEEEETTT------T
T ss_pred CCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC--------------CCcceEEECCCCCEEEEEecCC------C
Confidence 457877753211 122467999999988754443321 11112222224 4577776542 3
Q ss_pred eEEEEECCCCeEEEeccCCCCCC-----CccceEEEEE--CCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCC
Q 008611 273 QVKVFDLQTCSWSTLKTYGKPPV-----SRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPP 345 (559)
Q Consensus 273 ~v~~yd~~t~~W~~~~~~g~~p~-----~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p 345 (559)
.++.||+.+.+-...-..+.... +..-+.++.. ++.+|+.+... .+.+++||+.+.+-...-..
T Consensus 112 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-----~~~i~~~d~~~~~~~~~~~~---- 182 (353)
T 3vgz_A 112 AVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK-----ESVIWVVDGGNIKLKTAIQN---- 182 (353)
T ss_dssp EEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS-----SCEEEEEETTTTEEEEEECC----
T ss_pred EEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC-----CceEEEEcCCCCceEEEecC----
Confidence 79999999887433221111111 1112233333 34677766321 24599999987765433221
Q ss_pred CcccccEEEEEc-CCEEEEEcCCCCCCCcCceEEEECCCCeeE
Q 008611 346 SPRSDHAAAVHA-ERYLLIFGGGSHAACFNDLHVLDLQTMEWS 387 (559)
Q Consensus 346 ~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~ 387 (559)
....-+++++.. ++.+|+... -+.+++||+.+.+-.
T Consensus 183 ~~~~~~~~~~s~dg~~l~~~~~------~~~i~~~d~~~~~~~ 219 (353)
T 3vgz_A 183 TGKMSTGLALDSEGKRLYTTNA------DGELITIDTADNKIL 219 (353)
T ss_dssp CCTTCCCCEEETTTTEEEEECT------TSEEEEEETTTTEEE
T ss_pred CCCccceEEECCCCCEEEEEcC------CCeEEEEECCCCeEE
Confidence 111123344444 455666543 246889999887543
No 41
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.29 E-value=0.27 Score=54.76 Aligned_cols=166 Identities=10% Similarity=0.060 Sum_probs=93.7
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe-CCEEEEEeccCCCCCCcce
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-ENKLLSIAGHTKDPSEIIQ 273 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~ 273 (559)
++.||+-.. .-+++||+.+++|....... ....+.... .+++.. ++.|++-. .. ..
T Consensus 460 ~g~lwigt~-------~Gl~~~~~~~~~~~~~~~~~--------~~~~~~~~i-~~i~~d~~g~lWigt-~~------~G 516 (781)
T 3v9f_A 460 NKKIWIGTH-------AGVFVIDLASKKVIHHYDTS--------NSQLLENFV-RSIAQDSEGRFWIGT-FG------GG 516 (781)
T ss_dssp TSEEEEEET-------TEEEEEESSSSSCCEEECTT--------TSSCSCSCE-EEEEECTTCCEEEEE-SS------SC
T ss_pred CCCEEEEEC-------CceEEEeCCCCeEEecccCc--------cccccccee-EEEEEcCCCCEEEEE-cC------CC
Confidence 467776432 45899999999987764321 000111111 122222 56777643 21 24
Q ss_pred EEEEECCCCeEEEeccCCCCCCCccceEEEE-ECCEEEEEcCcCCCCCCcCce-EEEECCCCceEEecCCCCCCCccccc
Q 008611 274 VKVFDLQTCSWSTLKTYGKPPVSRGGQSVTL-VGTSLVIFGGEDAKRSLLNDL-HILDLETMTWDEIDAVGVPPSPRSDH 351 (559)
Q Consensus 274 v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~-~~yd~~t~~W~~~~~~~~~p~~r~~~ 351 (559)
+++||+.+.++..+.....+|.... .+++. -++.|++... +.+ ++||+.+.++.........|.... .
T Consensus 517 l~~~~~~~~~~~~~~~~~~l~~~~i-~~i~~d~~g~lWi~T~--------~Glv~~~d~~~~~~~~~~~~~gl~~~~i-~ 586 (781)
T 3v9f_A 517 VGIYTPDMQLVRKFNQYEGFCSNTI-NQIYRSSKGQMWLATG--------EGLVCFPSARNFDYQVFQRKEGLPNTHI-R 586 (781)
T ss_dssp EEEECTTCCEEEEECTTTTCSCSCE-EEEEECTTSCEEEEET--------TEEEEESCTTTCCCEEECGGGTCSCCCC-C
T ss_pred EEEEeCCCCeEEEccCCCCCCCCee-EEEEECCCCCEEEEEC--------CCceEEECCCCCcEEEccccCCCCCceE-E
Confidence 8899999999988864322332221 12222 2457777432 236 889999998887754322333332 3
Q ss_pred EEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEeccCCCCCCCCcc
Q 008611 352 AAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRA 400 (559)
Q Consensus 352 ~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~~~~~~~p~~R~ 400 (559)
+++...++.|++.+. +.+.+||+.+.++.......-++...+
T Consensus 587 ~i~~d~~g~lW~~t~-------~Gl~~~~~~~~~~~~~~~~dGl~~~~f 628 (781)
T 3v9f_A 587 AISEDKNGNIWASTN-------TGISCYITSKKCFYTYDHSNNIPQGSF 628 (781)
T ss_dssp EEEECSSSCEEEECS-------SCEEEEETTTTEEEEECGGGTCCSSCE
T ss_pred EEEECCCCCEEEEcC-------CceEEEECCCCceEEecccCCcccccc
Confidence 454444566877643 348999999998887743333444333
No 42
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=96.20 E-value=0.29 Score=46.44 Aligned_cols=114 Identities=9% Similarity=0.049 Sum_probs=77.5
Q ss_pred ccceeEEeCCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceE
Q 008611 247 AGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLH 326 (559)
Q Consensus 247 ~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~ 326 (559)
+..++...++.||+-.|..+ .+.+.++|+.+++=..-. +++..-.+.+++..+++||+.... .+.++
T Consensus 44 ftqGL~~~~~~LyestG~~g----~S~v~~vD~~Tgkv~~~~---~l~~~~FgeGit~~g~~ly~ltw~------~~~v~ 110 (262)
T 3nol_A 44 FTEGFFYRNGYFYESTGLNG----RSSIRKVDIESGKTLQQI---ELGKRYFGEGISDWKDKIVGLTWK------NGLGF 110 (262)
T ss_dssp EEEEEEEETTEEEEEEEETT----EEEEEEECTTTCCEEEEE---ECCTTCCEEEEEEETTEEEEEESS------SSEEE
T ss_pred ccceEEEECCEEEEECCCCC----CceEEEEECCCCcEEEEE---ecCCccceeEEEEeCCEEEEEEee------CCEEE
Confidence 34555556889999998754 367999999998754433 244444566688889999998653 46799
Q ss_pred EEECCCCceEE-ecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCee
Q 008611 327 ILDLETMTWDE-IDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEW 386 (559)
Q Consensus 327 ~yd~~t~~W~~-~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W 386 (559)
+||+.+.+-.. ++. +-.+.+++. .++.||+.-| .+.++.+|+.+.+-
T Consensus 111 v~D~~t~~~~~ti~~------~~eG~glt~-dg~~L~~SdG------s~~i~~iDp~T~~v 158 (262)
T 3nol_A 111 VWNIRNLRQVRSFNY------DGEGWGLTH-NDQYLIMSDG------TPVLRFLDPESLTP 158 (262)
T ss_dssp EEETTTCCEEEEEEC------SSCCCCEEE-CSSCEEECCS------SSEEEEECTTTCSE
T ss_pred EEECccCcEEEEEEC------CCCceEEec-CCCEEEEECC------CCeEEEEcCCCCeE
Confidence 99998876543 322 123344443 4566887654 25799999998653
No 43
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=96.17 E-value=0.36 Score=48.91 Aligned_cols=143 Identities=16% Similarity=0.083 Sum_probs=79.6
Q ss_pred cEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe-CCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccC
Q 008611 212 DMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTY 290 (559)
Q Consensus 212 ~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~ 290 (559)
.++.+|+.+..+..+.... ......+++.. ++.+++.++.+ ..+.++|+.+++.......
T Consensus 102 ~l~~~d~~~~~~~~~~~~~-------------~~~~~~~~~~s~~~~~~~~~~~~------~~i~~~d~~~g~~~~~~~~ 162 (433)
T 3bws_A 102 KLIALDKEGITHRFISRFK-------------TGFQPKSVRFIDNTRLAIPLLED------EGMDVLDINSGQTVRLSPP 162 (433)
T ss_dssp CEEECCBTTCSEEEEEEEE-------------CSSCBCCCEESSSSEEEEEBTTS------SSEEEEETTTCCEEEECCC
T ss_pred EEEEECCCCCcceEEEEEc-------------CCCCceEEEEeCCCeEEEEeCCC------CeEEEEECCCCeEeeecCc
Confidence 6888998877776665432 11111122222 67788877653 3499999998887654321
Q ss_pred CCCCCCccceEEEEE--CCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccccEEEEEc-CCEEEEEcCC
Q 008611 291 GKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHA-ERYLLIFGGG 367 (559)
Q Consensus 291 g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~-~~~l~v~GG~ 367 (559)
+...........+.+ ++.+|+.|+.+ ..+.+||+.+.+....-.. ....-.++++.. ++.+|+.++.
T Consensus 163 ~~~~~~~~~v~~~~~~~~~~~~~s~~~d------~~v~~~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~ 232 (433)
T 3bws_A 163 EKYKKKLGFVETISIPEHNELWVSQMQA------NAVHVFDLKTLAYKATVDL----TGKWSKILLYDPIRDLVYCSNWI 232 (433)
T ss_dssp HHHHTTCCEEEEEEEGGGTEEEEEEGGG------TEEEEEETTTCCEEEEEEC----SSSSEEEEEEETTTTEEEEEETT
T ss_pred ccccccCCceeEEEEcCCCEEEEEECCC------CEEEEEECCCceEEEEEcC----CCCCeeEEEEcCCCCEEEEEecC
Confidence 111111112222333 56888887743 4588999987654432211 112223444444 4456666643
Q ss_pred CCCCCcCceEEEECCCCeeEe
Q 008611 368 SHAACFNDLHVLDLQTMEWSR 388 (559)
Q Consensus 368 ~~~~~~~dv~~~d~~~~~W~~ 388 (559)
+ ..+.+||+.+.....
T Consensus 233 ~-----~~i~~~d~~~~~~~~ 248 (433)
T 3bws_A 233 S-----EDISVIDRKTKLEIR 248 (433)
T ss_dssp T-----TEEEEEETTTTEEEE
T ss_pred C-----CcEEEEECCCCcEEE
Confidence 2 368999998876544
No 44
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=96.16 E-value=0.63 Score=44.75 Aligned_cols=189 Identities=13% Similarity=0.091 Sum_probs=98.9
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe--CCEEEEEeccCCCCCCcc
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHTKDPSEII 272 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~ 272 (559)
++.+++.|+.+ ..+.+||+.+.+........ ........+.+ ++.+++.|+.+.
T Consensus 108 ~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~-------------~~~~~i~~~~~~~~~~~l~~~~~dg------ 163 (337)
T 1gxr_A 108 DGCTLIVGGEA-----STLSIWDLAAPTPRIKAELT-------------SSAPACYALAISPDSKVCFSCCSDG------ 163 (337)
T ss_dssp TSSEEEEEESS-----SEEEEEECCCC--EEEEEEE-------------CSSSCEEEEEECTTSSEEEEEETTS------
T ss_pred CCCEEEEEcCC-----CcEEEEECCCCCcceeeecc-------------cCCCceEEEEECCCCCEEEEEeCCC------
Confidence 45566666632 46899999988765443332 11111122222 566777777643
Q ss_pred eEEEEECCCCeEEEeccCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCccccc
Q 008611 273 QVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDH 351 (559)
Q Consensus 273 ~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~ 351 (559)
.+..||+.+.+....-. .... .-.+++.. ++..++.|+.+ ..+.+||+.+.+-..... ....-.
T Consensus 164 ~v~~~d~~~~~~~~~~~---~~~~-~i~~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~-----~~~~v~ 228 (337)
T 1gxr_A 164 NIAVWDLHNQTLVRQFQ---GHTD-GASCIDISNDGTKLWTGGLD------NTVRSWDLREGRQLQQHD-----FTSQIF 228 (337)
T ss_dssp CEEEEETTTTEEEEEEC---CCSS-CEEEEEECTTSSEEEEEETT------SEEEEEETTTTEEEEEEE-----CSSCEE
T ss_pred cEEEEeCCCCceeeeee---cccC-ceEEEEECCCCCEEEEEecC------CcEEEEECCCCceEeeec-----CCCceE
Confidence 48899998876544321 1111 11222222 45666677643 358899988765433321 111223
Q ss_pred EEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEeccCCCCCCCCccccEEEEECCceecceeeeeeccCCCcEEEEE
Q 008611 352 AAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAF 431 (559)
Q Consensus 352 ~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~~~~~~~p~~R~~hs~~~~~~~~~iG~s~~~~~~~~~~~l~v~ 431 (559)
+++...++.++++|+.+ ..+.+||+.+..-..+.. .......+.+.. .+.+++.
T Consensus 229 ~~~~s~~~~~l~~~~~~-----~~i~~~~~~~~~~~~~~~------~~~~v~~~~~~~---------------~~~~l~~ 282 (337)
T 1gxr_A 229 SLGYCPTGEWLAVGMES-----SNVEVLHVNKPDKYQLHL------HESCVLSLKFAY---------------CGKWFVS 282 (337)
T ss_dssp EEEECTTSSEEEEEETT-----SCEEEEETTSSCEEEECC------CSSCEEEEEECT---------------TSSEEEE
T ss_pred EEEECCCCCEEEEEcCC-----CcEEEEECCCCCeEEEcC------CccceeEEEECC---------------CCCEEEE
Confidence 44444555577777643 358899988765433321 011112222211 2256667
Q ss_pred cCcCCCCcccEEEEeCCCcce
Q 008611 432 GGYNGRYNNEVHVLKPSHKST 452 (559)
Q Consensus 432 GG~~~~~~~~v~~~d~~~~~~ 452 (559)
|+.++ .+.+||..+...
T Consensus 283 ~~~dg----~i~~~~~~~~~~ 299 (337)
T 1gxr_A 283 TGKDN----LLNAWRTPYGAS 299 (337)
T ss_dssp EETTS----EEEEEETTTCCE
T ss_pred ecCCC----cEEEEECCCCeE
Confidence 76543 688888877643
No 45
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=96.15 E-value=0.85 Score=43.80 Aligned_cols=147 Identities=12% Similarity=0.087 Sum_probs=78.1
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe--CCEEEEEeccCCCCCCcc
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHTKDPSEII 272 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~ 272 (559)
++.+++.|+.+ ..+.+||+.+++-...-.. ... .-.++.+ ++.+++.|+.+.
T Consensus 76 ~~~~l~s~~~d-----~~i~vwd~~~~~~~~~~~~-------------~~~--~v~~~~~~~~~~~l~s~~~d~------ 129 (312)
T 4ery_A 76 DSNLLVSASDD-----KTLKIWDVSSGKCLKTLKG-------------HSN--YVFCCNFNPQSNLIVSGSFDE------ 129 (312)
T ss_dssp TSSEEEEEETT-----SEEEEEETTTCCEEEEEEC-------------CSS--CEEEEEECSSSSEEEEEETTS------
T ss_pred CCCEEEEECCC-----CEEEEEECCCCcEEEEEcC-------------CCC--CEEEEEEcCCCCEEEEEeCCC------
Confidence 45677777643 3688899887754322110 011 1112222 566777777654
Q ss_pred eEEEEECCCCeEEEeccCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccc
Q 008611 273 QVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSD 350 (559)
Q Consensus 273 ~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~ 350 (559)
.+.+||+.+.+-...- +..........+ ++.+++.|+.++ .+.+||+.+.+....-... ....-
T Consensus 130 ~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d~------~i~~wd~~~~~~~~~~~~~---~~~~~ 195 (312)
T 4ery_A 130 SVRIWDVKTGKCLKTL-----PAHSDPVSAVHFNRDGSLIVSSSYDG------LCRIWDTASGQCLKTLIDD---DNPPV 195 (312)
T ss_dssp CEEEEETTTCCEEEEE-----CCCSSCEEEEEECTTSSEEEEEETTS------CEEEEETTTCCEEEEECCS---SCCCE
T ss_pred cEEEEECCCCEEEEEe-----cCCCCcEEEEEEcCCCCEEEEEeCCC------cEEEEECCCCceeeEEecc---CCCce
Confidence 4889999877643321 111111222222 456777777543 4888999877654322111 11111
Q ss_pred cEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCee
Q 008611 351 HAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEW 386 (559)
Q Consensus 351 ~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W 386 (559)
..++...++..++.|+.+ +.+.+||+.+..-
T Consensus 196 ~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~ 226 (312)
T 4ery_A 196 SFVKFSPNGKYILAATLD-----NTLKLWDYSKGKC 226 (312)
T ss_dssp EEEEECTTSSEEEEEETT-----TEEEEEETTTTEE
T ss_pred EEEEECCCCCEEEEEcCC-----CeEEEEECCCCcE
Confidence 223343455566666643 4588999987654
No 46
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=96.10 E-value=0.22 Score=49.04 Aligned_cols=106 Identities=10% Similarity=0.194 Sum_probs=62.0
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe--C--CEEEEEeccCCCCCC
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--E--NKLLSIAGHTKDPSE 270 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~--~~lyv~GG~~~~~~~ 270 (559)
++.+++.|+.+ ..+.+||+....+..+.... .....-.++.+ + +.+++.|+.++
T Consensus 22 ~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~-------------~h~~~v~~~~~~~~~~~~~l~s~~~dg---- 79 (379)
T 3jrp_A 22 YGKRLATCSSD-----KTIKIFEVEGETHKLIDTLT-------------GHEGPVWRVDWAHPKFGTILASCSYDG---- 79 (379)
T ss_dssp SSSEEEEEETT-----SCEEEEEEETTEEEEEEEEC-------------CCSSCEEEEEECCGGGCSEEEEEETTS----
T ss_pred CCCEEEEEECC-----CcEEEEecCCCcceeeeEec-------------CCCCcEEEEEeCCCCCCCEEEEeccCC----
Confidence 45566777643 35888888877777665442 11111223333 2 67777887654
Q ss_pred cceEEEEECCCCeEEEeccCCCCCCCccceEEEEE--C--CEEEEEcCcCCCCCCcCceEEEECCCC
Q 008611 271 IIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--G--TSLVIFGGEDAKRSLLNDLHILDLETM 333 (559)
Q Consensus 271 ~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~--~~lyv~GG~~~~~~~~~~~~~yd~~t~ 333 (559)
.+.+||+.+.+|..+... ........++.+ + +.+++.|+.+ ..+.+||+.+.
T Consensus 80 --~v~iwd~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~~~~~d------~~i~v~d~~~~ 135 (379)
T 3jrp_A 80 --KVLIWKEENGRWSQIAVH---AVHSASVNSVQWAPHEYGPLLLVASSD------GKVSVVEFKEN 135 (379)
T ss_dssp --CEEEEEEETTEEEEEEEE---CCCSSCEEEEEECCGGGCSEEEEEETT------SEEEEEECCTT
T ss_pred --EEEEEEcCCCceeEeeee---cCCCcceEEEEeCCCCCCCEEEEecCC------CcEEEEecCCC
Confidence 488899999988776532 111122222222 2 5677777653 35788888765
No 47
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=96.01 E-value=1.4 Score=43.74 Aligned_cols=160 Identities=13% Similarity=0.115 Sum_probs=87.2
Q ss_pred eEEEECCEEEEEccCCCCcccCcEEEEEcCCC--eEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCC
Q 008611 190 GAAVVQDKMYIYGGNHNGRYLSDMHILDLRSW--AWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKD 267 (559)
Q Consensus 190 ~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~ 267 (559)
+.++.++.||+... ...+++||+.++ .|+.-..... ............+.+..++.||+....
T Consensus 48 ~p~v~~~~v~~~~~------~g~v~a~d~~tG~~~W~~~~~~~~------~~~~~~~~~~~~~~~~~~~~v~v~~~~--- 112 (376)
T 3q7m_A 48 HPALADNVVYAADR------AGLVKALNADDGKEIWSVSLAEKD------GWFSKEPALLSGGVTVSGGHVYIGSEK--- 112 (376)
T ss_dssp CCEEETTEEEEECT------TSEEEEEETTTCCEEEEEECCC---------CCSCCCCCEEEEEEEETTEEEEEETT---
T ss_pred ccEEECCEEEEEcC------CCeEEEEEccCCceeeeecCcccc------ccccccCcccccCceEeCCEEEEEcCC---
Confidence 55677999999864 137999999876 4765422110 000000122233344557888885432
Q ss_pred CCCcceEEEEECCCCe--EEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCCc--eEEecCCCC
Q 008611 268 PSEIIQVKVFDLQTCS--WSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMT--WDEIDAVGV 343 (559)
Q Consensus 268 ~~~~~~v~~yd~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~ 343 (559)
..++.||..+++ |+.-... . ...+.+..++.+|+..+ ...++.||+.+.+ |.......
T Consensus 113 ----g~l~a~d~~tG~~~W~~~~~~-----~-~~~~p~~~~~~v~v~~~-------~g~l~~~d~~tG~~~W~~~~~~~- 174 (376)
T 3q7m_A 113 ----AQVYALNTSDGTVAWQTKVAG-----E-ALSRPVVSDGLVLIHTS-------NGQLQALNEADGAVKWTVNLDMP- 174 (376)
T ss_dssp ----SEEEEEETTTCCEEEEEECSS-----C-CCSCCEEETTEEEEECT-------TSEEEEEETTTCCEEEEEECCC--
T ss_pred ----CEEEEEECCCCCEEEEEeCCC-----c-eEcCCEEECCEEEEEcC-------CCeEEEEECCCCcEEEEEeCCCC-
Confidence 469999998775 7664321 1 11222445777777442 2369999997765 87653221
Q ss_pred CCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCC--eeEec
Q 008611 344 PPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTM--EWSRP 389 (559)
Q Consensus 344 ~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~--~W~~~ 389 (559)
....+...+.++ .++.+|+ |... ..++.||+.+. .|..-
T Consensus 175 ~~~~~~~~~~~~-~~~~v~~-g~~~-----g~l~~~d~~tG~~~w~~~ 215 (376)
T 3q7m_A 175 SLSLRGESAPTT-AFGAAVV-GGDN-----GRVSAVLMEQGQMIWQQR 215 (376)
T ss_dssp ----CCCCCCEE-ETTEEEE-CCTT-----TEEEEEETTTCCEEEEEE
T ss_pred ceeecCCCCcEE-ECCEEEE-EcCC-----CEEEEEECCCCcEEEEEe
Confidence 001111223333 3664554 4321 35889998765 57654
No 48
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=95.92 E-value=0.46 Score=47.27 Aligned_cols=147 Identities=16% Similarity=0.154 Sum_probs=80.0
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe-CC-EEEEEeccCCCCCCcc
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-EN-KLLSIAGHTKDPSEII 272 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~ 272 (559)
++.||+.|.. ...+.+||+.+++....-... ..-.+++.. ++ .||+.++.+ .
T Consensus 85 g~~l~~~~~~-----~~~v~v~d~~~~~~~~~~~~~---------------~~~~~~~~s~dg~~l~~~~~~~------~ 138 (391)
T 1l0q_A 85 GKQVYVTNMA-----SSTLSVIDTTSNTVAGTVKTG---------------KSPLGLALSPDGKKLYVTNNGD------K 138 (391)
T ss_dssp SSEEEEEETT-----TTEEEEEETTTTEEEEEEECS---------------SSEEEEEECTTSSEEEEEETTT------T
T ss_pred CCEEEEEECC-----CCEEEEEECCCCeEEEEEeCC---------------CCcceEEECCCCCEEEEEeCCC------C
Confidence 4557666542 246999999998765442211 111222222 33 576776542 4
Q ss_pred eEEEEECCCCeEEEeccCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccc
Q 008611 273 QVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSD 350 (559)
Q Consensus 273 ~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~ 350 (559)
.+.+||+.+.+....-..+.. -..++.. ++.||+.++.+ +.+.+||+.+.+....... ...-
T Consensus 139 ~v~~~d~~~~~~~~~~~~~~~-----~~~~~~~~dg~~l~~~~~~~------~~v~~~d~~~~~~~~~~~~-----~~~~ 202 (391)
T 1l0q_A 139 TVSVINTVTKAVINTVSVGRS-----PKGIAVTPDGTKVYVANFDS------MSISVIDTVTNSVIDTVKV-----EAAP 202 (391)
T ss_dssp EEEEEETTTTEEEEEEECCSS-----EEEEEECTTSSEEEEEETTT------TEEEEEETTTTEEEEEEEC-----SSEE
T ss_pred EEEEEECCCCcEEEEEecCCC-----cceEEECCCCCEEEEEeCCC------CEEEEEECCCCeEEEEEec-----CCCc
Confidence 799999998876655322211 1233332 33677776542 4589999988765443221 1122
Q ss_pred cEEEEEcCC-EEEEEcCCCCCCCcCceEEEECCCCee
Q 008611 351 HAAAVHAER-YLLIFGGGSHAACFNDLHVLDLQTMEW 386 (559)
Q Consensus 351 ~~~~~~~~~-~l~v~GG~~~~~~~~dv~~~d~~~~~W 386 (559)
.++++..++ .|++.+... .-..+.+||+.+..-
T Consensus 203 ~~~~~~~~g~~l~~~~~~~---~~~~v~~~d~~~~~~ 236 (391)
T 1l0q_A 203 SGIAVNPEGTKAYVTNVDK---YFNTVSMIDTGTNKI 236 (391)
T ss_dssp EEEEECTTSSEEEEEEECS---SCCEEEEEETTTTEE
T ss_pred cceEECCCCCEEEEEecCc---CCCcEEEEECCCCeE
Confidence 233443344 455544210 135689999987754
No 49
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=95.87 E-value=0.73 Score=43.97 Aligned_cols=114 Identities=20% Similarity=0.070 Sum_probs=73.2
Q ss_pred ceeEEeC-CEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEE
Q 008611 249 HSLIPWE-NKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHI 327 (559)
Q Consensus 249 ~~~~~~~-~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~ 327 (559)
++++..+ +.||+..|... .+.+..+|+.+++=..--+ ++....+.+++..+++||+..-. .+.+++
T Consensus 24 ~Gl~~~~dg~Lyvstg~~~----~s~v~~iD~~tg~v~~~i~---l~~~~fgeGi~~~g~~lyv~t~~------~~~v~v 90 (266)
T 2iwa_A 24 QGLVYAENDTLFESTGLYG----RSSVRQVALQTGKVENIHK---MDDSYFGEGLTLLNEKLYQVVWL------KNIGFI 90 (266)
T ss_dssp EEEEECSTTEEEEEECSTT----TCEEEEEETTTCCEEEEEE---CCTTCCEEEEEEETTEEEEEETT------CSEEEE
T ss_pred ccEEEeCCCeEEEECCCCC----CCEEEEEECCCCCEEEEEe---cCCCcceEEEEEeCCEEEEEEec------CCEEEE
Confidence 5666555 89999877532 3679999999998554332 33333445677778899998642 467999
Q ss_pred EECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCee
Q 008611 328 LDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEW 386 (559)
Q Consensus 328 yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W 386 (559)
||+.+.+-..--+.+ .|. +..++. .++.+|+..| .+.++.+|+.+.+-
T Consensus 91 iD~~t~~v~~~i~~g-~~~---g~glt~-Dg~~l~vs~g------s~~l~viD~~t~~v 138 (266)
T 2iwa_A 91 YDRRTLSNIKNFTHQ-MKD---GWGLAT-DGKILYGSDG------TSILYEIDPHTFKL 138 (266)
T ss_dssp EETTTTEEEEEEECC-SSS---CCEEEE-CSSSEEEECS------SSEEEEECTTTCCE
T ss_pred EECCCCcEEEEEECC-CCC---eEEEEE-CCCEEEEECC------CCeEEEEECCCCcE
Confidence 999876543221122 122 233333 4566888754 36799999988653
No 50
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=95.87 E-value=0.75 Score=46.80 Aligned_cols=148 Identities=11% Similarity=0.188 Sum_probs=81.1
Q ss_pred EECCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCCCCCcc
Q 008611 193 VVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEII 272 (559)
Q Consensus 193 ~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~ 272 (559)
..++..++.|+.+ ..+.+||+.+.+-...-. .....-.++.+++.+++.|+.++
T Consensus 140 ~~d~~~l~~g~~d-----g~i~iwd~~~~~~~~~~~---------------~h~~~v~~l~~~~~~l~sg~~dg------ 193 (435)
T 1p22_A 140 QYDDQKIVSGLRD-----NTIKIWDKNTLECKRILT---------------GHTGSVLCLQYDERVIITGSSDS------ 193 (435)
T ss_dssp ECCSSEEEEEESS-----SCEEEEESSSCCEEEEEC---------------CCSSCEEEEECCSSEEEEEETTS------
T ss_pred EECCCEEEEEeCC-----CeEEEEeCCCCeEEEEEc---------------CCCCcEEEEEECCCEEEEEcCCC------
Confidence 3467777777743 468899988776443311 11122234455888888888754
Q ss_pred eEEEEECCCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCCceEEe-cCCCCCCCccccc
Q 008611 273 QVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEI-DAVGVPPSPRSDH 351 (559)
Q Consensus 273 ~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~-~~~~~~p~~r~~~ 351 (559)
.+.++|+.+++....-. .......+..+.+..++.|+.+ ..+.+||+.+..-... ... .......
T Consensus 194 ~i~vwd~~~~~~~~~~~-----~h~~~v~~l~~~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~---~~~~~~v 259 (435)
T 1p22_A 194 TVRVWDVNTGEMLNTLI-----HHCEAVLHLRFNNGMMVTCSKD------RSIAVWDMASPTDITLRRVL---VGHRAAV 259 (435)
T ss_dssp CEEEEESSSCCEEEEEC-----CCCSCEEEEECCTTEEEEEETT------SCEEEEECSSSSCCEEEEEE---CCCSSCE
T ss_pred eEEEEECCCCcEEEEEc-----CCCCcEEEEEEcCCEEEEeeCC------CcEEEEeCCCCCCceeeeEe---cCCCCcE
Confidence 48899998876543321 1112223333455667777754 3478889876543211 100 0111112
Q ss_pred EEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCee
Q 008611 352 AAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEW 386 (559)
Q Consensus 352 ~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W 386 (559)
.++...++ .++.|+.+ ..+.+||+.+..-
T Consensus 260 ~~~~~~~~-~l~s~~~d-----g~i~vwd~~~~~~ 288 (435)
T 1p22_A 260 NVVDFDDK-YIVSASGD-----RTIKVWNTSTCEF 288 (435)
T ss_dssp EEEEEETT-EEEEEETT-----SEEEEEETTTCCE
T ss_pred EEEEeCCC-EEEEEeCC-----CeEEEEECCcCcE
Confidence 23333455 55666543 3588899877643
No 51
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=95.85 E-value=1.1 Score=45.62 Aligned_cols=160 Identities=8% Similarity=0.089 Sum_probs=85.9
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe--CCEEEEEeccCCCCCCcc
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHTKDPSEII 272 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~ 272 (559)
+.+|.+.+...+......++++|+....-..+... ... ...+.+ +++.+++++... ...
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~--------------~~~--v~~~~~Spdg~~la~~s~~~---~~~ 203 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRS--------------PQP--LMSPAWSPDGSKLAYVTFES---GRS 203 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEE--------------SSC--EEEEEECTTSSEEEEEECTT---SSC
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCC--------------CCc--ceeeEEcCCCCEEEEEEecC---CCc
Confidence 44554444322223336789999887655544321 111 122222 566666666532 235
Q ss_pred eEEEEECCCCeEEEeccCCCCCCCccceEEEEE-CC-EEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccc
Q 008611 273 QVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GT-SLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSD 350 (559)
Q Consensus 273 ~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~ 350 (559)
.++.+|+.+++...+.. .+. ...+.+.. ++ .|++.+..++ ...|+.+|+.+.+...+... ....
T Consensus 204 ~i~~~d~~tg~~~~l~~---~~~--~~~~~~~spdg~~la~~~~~~g----~~~i~~~d~~~~~~~~l~~~-----~~~~ 269 (415)
T 2hqs_A 204 ALVIQTLANGAVRQVAS---FPR--HNGAPAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTDG-----RSNN 269 (415)
T ss_dssp EEEEEETTTCCEEEEEC---CSS--CEEEEEECTTSSEEEEEECTTS----SCEEEEEETTTCCEEECCCC-----SSCE
T ss_pred EEEEEECCCCcEEEeec---CCC--cccCEEEcCCCCEEEEEEecCC----CceEEEEECCCCCEEeCcCC-----CCcc
Confidence 89999999998776642 111 11222222 44 4554554332 24699999998887665422 1122
Q ss_pred cEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEec
Q 008611 351 HAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRP 389 (559)
Q Consensus 351 ~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~ 389 (559)
.+.+...++..+++++...+ ...+|++|+.+..-..+
T Consensus 270 ~~~~~spdg~~l~~~s~~~g--~~~i~~~d~~~~~~~~l 306 (415)
T 2hqs_A 270 TEPTWFPDSQNLAFTSDQAG--RPQVYKVNINGGAPQRI 306 (415)
T ss_dssp EEEEECTTSSEEEEEECTTS--SCEEEEEETTSSCCEEC
T ss_pred cceEECCCCCEEEEEECCCC--CcEEEEEECCCCCEEEE
Confidence 33344445545555442211 24699999988765554
No 52
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=95.75 E-value=3 Score=45.51 Aligned_cols=132 Identities=17% Similarity=0.166 Sum_probs=73.1
Q ss_pred eeEEEECCEEEEEccCCCCcccCcEEEEEcCCCe--EEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCC
Q 008611 189 HGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWA--WSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTK 266 (559)
Q Consensus 189 ~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~ 266 (559)
.+-++.++.||+... .+.++.+|..|++ |+.-....... .+.........+.+..+++||+...
T Consensus 71 ~~P~v~~g~vyv~~~------~~~v~AlD~~tG~~~W~~~~~~~~~~-----~~~~~~~~~~~~~a~~~~~v~v~~~--- 136 (677)
T 1kb0_A 71 ATPVVVDGIMYVSAS------WSVVHAIDTRTGNRIWTYDPQIDRST-----GFKGCCDVVNRGVALWKGKVYVGAW--- 136 (677)
T ss_dssp CCCEEETTEEEEECG------GGCEEEEETTTTEEEEEECCCCCGGG-----GGGSSSCSCCCCCEEETTEEEEECT---
T ss_pred eCCEEECCEEEEECC------CCeEEEEECCCCcEEEEEcCCCCccc-----cccccccCCCCCceEECCEEEEEcC---
Confidence 344667999999875 2579999998874 87643211000 0000000122345556888887632
Q ss_pred CCCCcceEEEEECCCCe--EEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCCc--eEEec
Q 008611 267 DPSEIIQVKVFDLQTCS--WSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMT--WDEID 339 (559)
Q Consensus 267 ~~~~~~~v~~yd~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~ 339 (559)
...++.+|..+++ |+.-.............+.++.++.+|+..+... ......|+.||..|.+ |+.-.
T Consensus 137 ----dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~-~~~~g~v~a~D~~tG~~~W~~~~ 208 (677)
T 1kb0_A 137 ----DGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAE-YGVRGYITAYDAETGERKWRWFS 208 (677)
T ss_dssp ----TSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTT-TCCBCEEEEEETTTCCEEEEEES
T ss_pred ----CCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccc-cCCCCEEEEEECCCCcEEEEecc
Confidence 2469999998875 8765320001111112233455777776543221 1124569999998764 87653
No 53
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=95.70 E-value=0.81 Score=45.95 Aligned_cols=136 Identities=12% Similarity=0.130 Sum_probs=74.7
Q ss_pred CcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe--CCEEEEEeccCCCCCCcceEEEEECCCCeEEEec
Q 008611 211 SDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLK 288 (559)
Q Consensus 211 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 288 (559)
..+.+||+.++......... ....-.++.+ ++.+++.|+.++ .+.+||+.+.+....-
T Consensus 113 ~~v~lw~~~~~~~~~~~~~~--------------~~~~v~~v~~s~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~ 172 (401)
T 4aez_A 113 RNVYVWNADSGSVSALAETD--------------ESTYVASVKWSHDGSFLSVGLGNG------LVDIYDVESQTKLRTM 172 (401)
T ss_dssp TEEEEEETTTCCEEEEEECC--------------TTCCEEEEEECTTSSEEEEEETTS------CEEEEETTTCCEEEEE
T ss_pred CeEEEeeCCCCcEeEeeecC--------------CCCCEEEEEECCCCCEEEEECCCC------eEEEEECcCCeEEEEe
Confidence 45888898888776554321 1111223333 567777777643 5889998887644332
Q ss_pred cCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCC
Q 008611 289 TYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGS 368 (559)
Q Consensus 289 ~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~ 368 (559)
. .......+...++.+++.|+.+ ..+.+||+.+..-...... .....-.++....++.+++.|+.+
T Consensus 173 ~-----~~~~~v~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~d 238 (401)
T 4aez_A 173 A-----GHQARVGCLSWNRHVLSSGSRS------GAIHHHDVRIANHQIGTLQ---GHSSEVCGLAWRSDGLQLASGGND 238 (401)
T ss_dssp C-----CCSSCEEEEEEETTEEEEEETT------SEEEEEETTSSSCEEEEEE---CCSSCEEEEEECTTSSEEEEEETT
T ss_pred c-----CCCCceEEEEECCCEEEEEcCC------CCEEEEecccCcceeeEEc---CCCCCeeEEEEcCCCCEEEEEeCC
Confidence 1 1112223333466677777754 3588899874332111111 111222334444455577777754
Q ss_pred CCCCcCceEEEECCCCe
Q 008611 369 HAACFNDLHVLDLQTME 385 (559)
Q Consensus 369 ~~~~~~dv~~~d~~~~~ 385 (559)
..+.+||+.+..
T Consensus 239 -----~~v~iwd~~~~~ 250 (401)
T 4aez_A 239 -----NVVQIWDARSSI 250 (401)
T ss_dssp -----SCEEEEETTCSS
T ss_pred -----CeEEEccCCCCC
Confidence 358899988754
No 54
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=95.66 E-value=0.61 Score=45.77 Aligned_cols=150 Identities=13% Similarity=0.238 Sum_probs=80.4
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe--CCEEEEEeccCCCCCCcc
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHTKDPSEII 272 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~ 272 (559)
++.++++|+.+ ..+.+||+.+.+|..+.... .....-..+.+ ++.+++.|+.+.
T Consensus 19 ~~~~l~~~~~d-----~~v~i~~~~~~~~~~~~~~~-------------~h~~~v~~~~~~~~~~~l~~~~~dg------ 74 (372)
T 1k8k_C 19 DRTQIAICPNN-----HEVHIYEKSGNKWVQVHELK-------------EHNGQVTGVDWAPDSNRIVTCGTDR------ 74 (372)
T ss_dssp TSSEEEEECSS-----SEEEEEEEETTEEEEEEEEE-------------CCSSCEEEEEEETTTTEEEEEETTS------
T ss_pred CCCEEEEEeCC-----CEEEEEeCCCCcEEeeeeec-------------CCCCcccEEEEeCCCCEEEEEcCCC------
Confidence 45677777632 46899999999877665543 11111122222 567777777543
Q ss_pred eEEEEECCCCeEEEeccCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEEEECCCCc-eEEecCCCCCCCcccc
Q 008611 273 QVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMT-WDEIDAVGVPPSPRSD 350 (559)
Q Consensus 273 ~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~~~~~~~p~~r~~ 350 (559)
.+.+||+.+.++...... ......-.++... ++.+++.|+.++ .+.+||+.+.. |....... .+....-
T Consensus 75 ~i~vwd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~------~v~i~d~~~~~~~~~~~~~~-~~~~~~i 145 (372)
T 1k8k_C 75 NAYVWTLKGRTWKPTLVI--LRINRAARCVRWAPNEKKFAVGSGSR------VISICYFEQENDWWVCKHIK-KPIRSTV 145 (372)
T ss_dssp CEEEEEEETTEEEEEEEC--CCCSSCEEEEEECTTSSEEEEEETTS------SEEEEEEETTTTEEEEEEEC-TTCCSCE
T ss_pred eEEEEECCCCeeeeeEEe--ecCCCceeEEEECCCCCEEEEEeCCC------EEEEEEecCCCcceeeeeee-cccCCCe
Confidence 488899988887665421 1111111222222 456777776542 36666665543 33322110 1222223
Q ss_pred cEEEEEcCCEEEEEcCCCCCCCcCceEEEECC
Q 008611 351 HAAAVHAERYLLIFGGGSHAACFNDLHVLDLQ 382 (559)
Q Consensus 351 ~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~ 382 (559)
.+++...++.+++.|+.+ ..+.+||+.
T Consensus 146 ~~~~~~~~~~~l~~~~~d-----g~i~~~d~~ 172 (372)
T 1k8k_C 146 LSLDWHPNSVLLAAGSCD-----FKCRIFSAY 172 (372)
T ss_dssp EEEEECTTSSEEEEEETT-----SCEEEEECC
T ss_pred eEEEEcCCCCEEEEEcCC-----CCEEEEEcc
Confidence 344444455577777653 357888864
No 55
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=95.59 E-value=2.3 Score=43.12 Aligned_cols=150 Identities=13% Similarity=0.120 Sum_probs=78.8
Q ss_pred eEEeCCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEEC
Q 008611 251 LIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDL 330 (559)
Q Consensus 251 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~ 330 (559)
++.+++..++.|+.++ .+..||+.+.+-...- ........+...++..++.|+.+ +.+.+||+
T Consensus 244 ~~~~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~~~~~l~~~~~d------~~i~i~d~ 306 (445)
T 2ovr_B 244 CVQYDGRRVVSGAYDF------MVKVWDPETETCLHTL-----QGHTNRVYSLQFDGIHVVSGSLD------TSIRVWDV 306 (445)
T ss_dssp EEEECSSCEEEEETTS------CEEEEEGGGTEEEEEE-----CCCSSCEEEEEECSSEEEEEETT------SCEEEEET
T ss_pred EEEECCCEEEEEcCCC------EEEEEECCCCcEeEEe-----cCCCCceEEEEECCCEEEEEeCC------CeEEEEEC
Confidence 3445777777777643 4888888776533221 11111222333467777777754 34889999
Q ss_pred CCCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEe-ccCCCCCCCCccccEEEEECC
Q 008611 331 ETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSR-PTQQGEIPTPRAGHAGVTIGE 409 (559)
Q Consensus 331 ~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~-~~~~~~~p~~R~~hs~~~~~~ 409 (559)
.+.+-...-.. . ..........++ +++.|+.+ ..+.+||+.+..-.. +. +.. .......++.+++
T Consensus 307 ~~~~~~~~~~~----~-~~~v~~~~~~~~-~l~~~~~d-----g~i~vwd~~~~~~~~~~~--~~~-~~~~~v~~~~~~~ 372 (445)
T 2ovr_B 307 ETGNCIHTLTG----H-QSLTSGMELKDN-ILVSGNAD-----STVKIWDIKTGQCLQTLQ--GPN-KHQSAVTCLQFNK 372 (445)
T ss_dssp TTCCEEEEECC----C-CSCEEEEEEETT-EEEEEETT-----SCEEEEETTTCCEEEEEC--STT-SCSSCEEEEEECS
T ss_pred CCCCEEEEEcC----C-cccEEEEEEeCC-EEEEEeCC-----CeEEEEECCCCcEEEEEc--cCC-CCCCCEEEEEECC
Confidence 87654332111 1 111122333455 66666643 358899987764322 21 100 0111122233322
Q ss_pred ceecceeeeeeccCCCcEEEEEcCcCCCCcccEEEEeCCCcce
Q 008611 410 NWFLGLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSHKST 452 (559)
Q Consensus 410 ~~~iG~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~~d~~~~~~ 452 (559)
.+++.||.++ .|.+||..+...
T Consensus 373 -----------------~~l~s~~~dg----~v~iwd~~~~~~ 394 (445)
T 2ovr_B 373 -----------------NFVITSSDDG----TVKLWDLKTGEF 394 (445)
T ss_dssp -----------------SEEEEEETTS----EEEEEETTTCCE
T ss_pred -----------------CEEEEEeCCC----eEEEEECCCCce
Confidence 5667777554 688888877643
No 56
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=95.56 E-value=1.9 Score=41.83 Aligned_cols=201 Identities=11% Similarity=0.004 Sum_probs=100.5
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe--CCEEEEEeccCCCCCCcc
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHTKDPSEII 272 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~ 272 (559)
++.+|+.++.+ +.+++||+.+++-...-..... ..+....+..-+.++.. ++.+|+.+... ..
T Consensus 100 g~~l~v~~~~~-----~~v~~~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-----~~ 164 (353)
T 3vgz_A 100 TQTLWFGNTVN-----SAVTAIDAKTGEVKGRLVLDDR-----KRTEEVRPLQPRELVADDATNTVYISGIGK-----ES 164 (353)
T ss_dssp TTEEEEEETTT-----TEEEEEETTTCCEEEEEESCCC-----CCCSSCCCCEEEEEEEETTTTEEEEEEESS-----SC
T ss_pred CCEEEEEecCC-----CEEEEEeCCCCeeEEEEecCCC-----ccccccCCCCCceEEECCCCCEEEEEecCC-----Cc
Confidence 35688876532 4799999998875433222100 00000001111223332 34677665321 24
Q ss_pred eEEEEECCCCeEEEecc-CCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCccc
Q 008611 273 QVKVFDLQTCSWSTLKT-YGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRS 349 (559)
Q Consensus 273 ~v~~yd~~t~~W~~~~~-~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~ 349 (559)
.++.||+.+.+-...-. .+.. -+.++.. ++.+|+... .+.+++||+.+.+-......+.......
T Consensus 165 ~i~~~d~~~~~~~~~~~~~~~~-----~~~~~~s~dg~~l~~~~~-------~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 232 (353)
T 3vgz_A 165 VIWVVDGGNIKLKTAIQNTGKM-----STGLALDSEGKRLYTTNA-------DGELITIDTADNKILSRKKLLDDGKEHF 232 (353)
T ss_dssp EEEEEETTTTEEEEEECCCCTT-----CCCCEEETTTTEEEEECT-------TSEEEEEETTTTEEEEEEECCCSSSCCC
T ss_pred eEEEEcCCCCceEEEecCCCCc-----cceEEECCCCCEEEEEcC-------CCeEEEEECCCCeEEEEEEcCCCCCCcc
Confidence 69999999876544321 1111 1222332 346776543 2468899998876443322211111122
Q ss_pred ccEEEEEc-CCEEEEEcCCCCCCCcCceEEEECCCCeeEeccCCCCCCCCccccEEEEECCceecceeeeeeccCCCcEE
Q 008611 350 DHAAAVHA-ERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVI 428 (559)
Q Consensus 350 ~~~~~~~~-~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~~~~~~~p~~R~~hs~~~~~~~~~iG~s~~~~~~~~~~~l 428 (559)
..++++.. ++.+|+.+.. .+.+++||+.+.+...... .+.+ .+.+...+ +..+
T Consensus 233 ~~~~~~s~dg~~l~~~~~~-----~~~v~~~d~~~~~~~~~~~---~~~~---~~~~~s~d---------------g~~l 286 (353)
T 3vgz_A 233 FINISLDTARQRAFITDSK-----AAEVLVVDTRNGNILAKVA---APES---LAVLFNPA---------------RNEA 286 (353)
T ss_dssp EEEEEEETTTTEEEEEESS-----SSEEEEEETTTCCEEEEEE---CSSC---CCEEEETT---------------TTEE
T ss_pred cceEEECCCCCEEEEEeCC-----CCEEEEEECCCCcEEEEEE---cCCC---ceEEECCC---------------CCEE
Confidence 22344443 4557666532 2569999998876543321 1112 12222222 3367
Q ss_pred EEEcCcCCCCcccEEEEeCCCcce
Q 008611 429 VAFGGYNGRYNNEVHVLKPSHKST 452 (559)
Q Consensus 429 ~v~GG~~~~~~~~v~~~d~~~~~~ 452 (559)
|+.+..+ +.|.++|+.+...
T Consensus 287 ~v~~~~~----~~v~~~d~~~~~~ 306 (353)
T 3vgz_A 287 YVTHRQA----GKVSVIDAKSYKV 306 (353)
T ss_dssp EEEETTT----TEEEEEETTTTEE
T ss_pred EEEECCC----CeEEEEECCCCeE
Confidence 7765432 4788999877643
No 57
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=95.54 E-value=0.55 Score=47.25 Aligned_cols=153 Identities=12% Similarity=0.144 Sum_probs=76.1
Q ss_pred CCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCcCceEEEECCC
Q 008611 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLET 332 (559)
Q Consensus 255 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t 332 (559)
++.+++.|+.+. .+.+||+.+..-...-. ... ..-.+++.. +..+++.||-.. -..+.+||+.+
T Consensus 228 ~~~~l~s~~~d~------~v~iwd~~~~~~~~~~~--~~~--~~v~~~~~~p~~~~ll~~~~gs~----d~~i~i~d~~~ 293 (401)
T 4aez_A 228 DGLQLASGGNDN------VVQIWDARSSIPKFTKT--NHN--AAVKAVAWCPWQSNLLATGGGTM----DKQIHFWNAAT 293 (401)
T ss_dssp TSSEEEEEETTS------CEEEEETTCSSEEEEEC--CCS--SCCCEEEECTTSTTEEEEECCTT----TCEEEEEETTT
T ss_pred CCCEEEEEeCCC------eEEEccCCCCCccEEec--CCc--ceEEEEEECCCCCCEEEEecCCC----CCEEEEEECCC
Confidence 567788887643 48899998765332211 111 111223332 346777775211 23588999987
Q ss_pred CceEEecCCCCCCCcccccEEEEEcC-CEEEEEcCCCCCCCcCceEEEECCCCeeEeccCCCCCCCCccccEEEEECCce
Q 008611 333 MTWDEIDAVGVPPSPRSDHAAAVHAE-RYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENW 411 (559)
Q Consensus 333 ~~W~~~~~~~~~p~~r~~~~~~~~~~-~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~~~~~~~p~~R~~hs~~~~~~~~ 411 (559)
..-...-.. ...-.+++...+ ..+++.+|... +.+.+||+.+.....+.. +.........+.+..
T Consensus 294 ~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~g~~d----g~i~v~~~~~~~~~~~~~---~~~h~~~v~~~~~s~-- 359 (401)
T 4aez_A 294 GARVNTVDA-----GSQVTSLIWSPHSKEIMSTHGFPD----NNLSIWSYSSSGLTKQVD---IPAHDTRVLYSALSP-- 359 (401)
T ss_dssp CCEEEEEEC-----SSCEEEEEECSSSSEEEEEECTTT----CEEEEEEEETTEEEEEEE---EECCSSCCCEEEECT--
T ss_pred CCEEEEEeC-----CCcEEEEEECCCCCeEEEEeecCC----CcEEEEecCCccceeEEE---ecCCCCCEEEEEECC--
Confidence 765433211 111223333333 44555545332 358889988766655421 001111111222211
Q ss_pred ecceeeeeeccCCCcEEEEEcCcCCCCcccEEEEeCCCcce
Q 008611 412 FLGLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSHKST 452 (559)
Q Consensus 412 ~iG~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~~d~~~~~~ 452 (559)
.+.+++.||.++ .|.+||..+...
T Consensus 360 -------------dg~~l~s~~~dg----~i~iw~~~~~~~ 383 (401)
T 4aez_A 360 -------------DGRILSTAASDE----NLKFWRVYDGDH 383 (401)
T ss_dssp -------------TSSEEEEECTTS----EEEEEECCC---
T ss_pred -------------CCCEEEEEeCCC----cEEEEECCCCcc
Confidence 225667777554 688888877643
No 58
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=95.50 E-value=2.2 Score=42.26 Aligned_cols=149 Identities=12% Similarity=0.141 Sum_probs=83.0
Q ss_pred EEEECCEEEEEccCCCCcccCcEEEEEcCCCe--EEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCCC
Q 008611 191 AAVVQDKMYIYGGNHNGRYLSDMHILDLRSWA--WSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDP 268 (559)
Q Consensus 191 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~ 268 (559)
.++.++.||+..+ ...++.||+.+++ |+.-.... ....+...+.+..++.+|+ |..
T Consensus 139 p~~~~~~v~v~~~------~g~l~~~d~~tG~~~W~~~~~~~-----------~~~~~~~~~~~~~~~~v~~-g~~---- 196 (376)
T 3q7m_A 139 PVVSDGLVLIHTS------NGQLQALNEADGAVKWTVNLDMP-----------SLSLRGESAPTTAFGAAVV-GGD---- 196 (376)
T ss_dssp CEEETTEEEEECT------TSEEEEEETTTCCEEEEEECCC----------------CCCCCCEEETTEEEE-CCT----
T ss_pred CEEECCEEEEEcC------CCeEEEEECCCCcEEEEEeCCCC-----------ceeecCCCCcEEECCEEEE-EcC----
Confidence 3456788877543 2369999998875 77543211 1111222334455777666 322
Q ss_pred CCcceEEEEECCCCe--EEEeccCCCCCCCc--------cceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCC--ceE
Q 008611 269 SEIIQVKVFDLQTCS--WSTLKTYGKPPVSR--------GGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETM--TWD 336 (559)
Q Consensus 269 ~~~~~v~~yd~~t~~--W~~~~~~g~~p~~r--------~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~--~W~ 336 (559)
...+..||+.+++ |+.... .|... .....+..++.+|+.+. ...+++||+.+. .|.
T Consensus 197 --~g~l~~~d~~tG~~~w~~~~~---~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~-------~g~l~~~d~~tG~~~w~ 264 (376)
T 3q7m_A 197 --NGRVSAVLMEQGQMIWQQRIS---QATGSTEIDRLSDVDTTPVVVNGVVFALAY-------NGNLTALDLRSGQIMWK 264 (376)
T ss_dssp --TTEEEEEETTTCCEEEEEECC---C-----------CCCCCCEEETTEEEEECT-------TSCEEEEETTTCCEEEE
T ss_pred --CCEEEEEECCCCcEEEEEecc---cCCCCcccccccccCCCcEEECCEEEEEec-------CcEEEEEECCCCcEEee
Confidence 2368999998764 776531 11111 11233445778887642 235899999776 465
Q ss_pred EecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCe--eEe
Q 008611 337 EIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTME--WSR 388 (559)
Q Consensus 337 ~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~--W~~ 388 (559)
... +. .....+.++.||+.... ..+++||+.+.+ |..
T Consensus 265 ~~~-----~~----~~~~~~~~~~l~~~~~~------g~l~~~d~~tG~~~w~~ 303 (376)
T 3q7m_A 265 REL-----GS----VNDFIVDGNRIYLVDQN------DRVMALTIDGGVTLWTQ 303 (376)
T ss_dssp ECC-----CC----EEEEEEETTEEEEEETT------CCEEEEETTTCCEEEEE
T ss_pred ccC-----CC----CCCceEECCEEEEEcCC------CeEEEEECCCCcEEEee
Confidence 431 11 12233447778876532 358999998764 765
No 59
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=95.50 E-value=2.3 Score=42.68 Aligned_cols=153 Identities=11% Similarity=0.060 Sum_probs=80.6
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe--CCEEEEEeccCCCCCCcc
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHTKDPSEII 272 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~ 272 (559)
++.+|+.|+.+ ..+.+||+.+.+....-.. ....-.+++.. +..+|+.++.+ .
T Consensus 180 ~~~~~~s~~~d-----~~v~~~d~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~l~~~~~~~------~ 234 (433)
T 3bws_A 180 HNELWVSQMQA-----NAVHVFDLKTLAYKATVDL--------------TGKWSKILLYDPIRDLVYCSNWIS------E 234 (433)
T ss_dssp GTEEEEEEGGG-----TEEEEEETTTCCEEEEEEC--------------SSSSEEEEEEETTTTEEEEEETTT------T
T ss_pred CCEEEEEECCC-----CEEEEEECCCceEEEEEcC--------------CCCCeeEEEEcCCCCEEEEEecCC------C
Confidence 67888887632 4689999988664432211 01111122222 34566666442 3
Q ss_pred eEEEEECCCCeEEEeccCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCC--cCceEEEECCCCceEEecCCCCCCCccc
Q 008611 273 QVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSL--LNDLHILDLETMTWDEIDAVGVPPSPRS 349 (559)
Q Consensus 273 ~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~--~~~~~~yd~~t~~W~~~~~~~~~p~~r~ 349 (559)
.+.+||+.+.+....-. ....-.+++.. ++..+++++....... -..+++||+.+.+-...... +..
T Consensus 235 ~i~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~-----~~~ 304 (433)
T 3bws_A 235 DISVIDRKTKLEIRKTD-----KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGP-----PGN 304 (433)
T ss_dssp EEEEEETTTTEEEEECC-----CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEE-----EEC
T ss_pred cEEEEECCCCcEEEEec-----CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccC-----CCC
Confidence 69999999887654421 11112223332 4444444444222111 24689999987755433211 111
Q ss_pred ccEEEEEcC-CEEEEEcCCCCCCCcCceEEEECCCCeeE
Q 008611 350 DHAAAVHAE-RYLLIFGGGSHAACFNDLHVLDLQTMEWS 387 (559)
Q Consensus 350 ~~~~~~~~~-~~l~v~GG~~~~~~~~dv~~~d~~~~~W~ 387 (559)
-.++++..+ +.+|+.++.+ +.+.+||+.+.+-.
T Consensus 305 ~~~~~~~~~g~~l~~~~~~~-----~~v~v~d~~~~~~~ 338 (433)
T 3bws_A 305 KRHIVSGNTENKIYVSDMCC-----SKIEVYDLKEKKVQ 338 (433)
T ss_dssp EEEEEECSSTTEEEEEETTT-----TEEEEEETTTTEEE
T ss_pred cceEEECCCCCEEEEEecCC-----CEEEEEECCCCcEE
Confidence 123333333 4677776543 46899999876543
No 60
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=95.38 E-value=0.3 Score=48.07 Aligned_cols=149 Identities=15% Similarity=0.152 Sum_probs=79.8
Q ss_pred CEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe--C--CEEEEEeccCCCCCCc
Q 008611 196 DKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--E--NKLLSIAGHTKDPSEI 271 (559)
Q Consensus 196 ~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~--~~lyv~GG~~~~~~~~ 271 (559)
+.+++.|+.+ ..+.+||+.++.|..+.... .......++.+ + +.+++.|+.+.
T Consensus 69 ~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~~~-------------~~~~~v~~~~~~~~~~~~~l~~~~~d~----- 125 (379)
T 3jrp_A 69 GTILASCSYD-----GKVLIWKEENGRWSQIAVHA-------------VHSASVNSVQWAPHEYGPLLLVASSDG----- 125 (379)
T ss_dssp CSEEEEEETT-----SCEEEEEEETTEEEEEEEEC-------------CCSSCEEEEEECCGGGCSEEEEEETTS-----
T ss_pred CCEEEEeccC-----CEEEEEEcCCCceeEeeeec-------------CCCcceEEEEeCCCCCCCEEEEecCCC-----
Confidence 5677777743 35889999999987776543 11112223333 3 66777777643
Q ss_pred ceEEEEECCCCeE-EEeccCCCCCCCccceEEEEE--------------CCEEEEEcCcCCCCCCcCceEEEECCCC--c
Q 008611 272 IQVKVFDLQTCSW-STLKTYGKPPVSRGGQSVTLV--------------GTSLVIFGGEDAKRSLLNDLHILDLETM--T 334 (559)
Q Consensus 272 ~~v~~yd~~t~~W-~~~~~~g~~p~~r~~~~~~~~--------------~~~lyv~GG~~~~~~~~~~~~~yd~~t~--~ 334 (559)
.+.+||+.+... ...... ....+ -.+++.. ++.+++.|+.++ .+.+||+.+. .
T Consensus 126 -~i~v~d~~~~~~~~~~~~~-~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg------~i~i~d~~~~~~~ 195 (379)
T 3jrp_A 126 -KVSVVEFKENGTTSPIIID-AHAIG--VNSASWAPATIEEDGEHNGTKESRKFVTGGADN------LVKIWKYNSDAQT 195 (379)
T ss_dssp -EEEEEECCTTSCCCEEEEE-CCTTC--EEEEEECCCC----------CTTCEEEEEETTS------CEEEEEEETTTTE
T ss_pred -cEEEEecCCCCceeeEEec-CCCCc--eEEEEEcCccccccccccCCCCCCEEEEEeCCC------eEEEEEecCCCcc
Confidence 578888877632 111110 01111 1112222 357777777643 4777877544 3
Q ss_pred eEEecCCCCCCCcccccEEEEEcC---CEEEEEcCCCCCCCcCceEEEECCCC
Q 008611 335 WDEIDAVGVPPSPRSDHAAAVHAE---RYLLIFGGGSHAACFNDLHVLDLQTM 384 (559)
Q Consensus 335 W~~~~~~~~~p~~r~~~~~~~~~~---~~l~v~GG~~~~~~~~dv~~~d~~~~ 384 (559)
|..+.... .....-.+++...+ +.+++.|+.+ ..+.+||+.+.
T Consensus 196 ~~~~~~~~--~h~~~v~~~~~sp~~~~~~~l~s~~~d-----g~i~iwd~~~~ 241 (379)
T 3jrp_A 196 YVLESTLE--GHSDWVRDVAWSPTVLLRSYLASVSQD-----RTCIIWTQDNE 241 (379)
T ss_dssp EEEEEEEC--CCSSCEEEEEECCCCSSSEEEEEEETT-----SCEEEEEESST
T ss_pred eeeEEEEe--cccCcEeEEEECCCCCCCCeEEEEeCC-----CEEEEEeCCCC
Confidence 54433221 11122234444445 6788887754 34778887765
No 61
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=95.36 E-value=1 Score=42.05 Aligned_cols=158 Identities=10% Similarity=0.054 Sum_probs=82.5
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCC-CeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCCCCCcce
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRS-WAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQ 273 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t-~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~ 273 (559)
+++.+++++ -..++++|+.+ .+...+.... ...........-++..+++++.... ....
T Consensus 52 dg~~l~~~~------~~~i~~~d~~~~~~~~~~~~~~------------~~~~~~~~~~spdg~~l~~~~~~~~--~~~~ 111 (297)
T 2ojh_A 52 DGKYLLLNS------EGLLYRLSLAGDPSPEKVDTGF------------ATICNNDHGISPDGALYAISDKVEF--GKSA 111 (297)
T ss_dssp TSSEEEEEE------TTEEEEEESSSCCSCEECCCTT------------CCCBCSCCEECTTSSEEEEEECTTT--SSCE
T ss_pred CCCEEEEEc------CCeEEEEeCCCCCCceEecccc------------ccccccceEECCCCCEEEEEEeCCC--Ccce
Confidence 455555554 14799999998 7766553210 1111122222236666666664322 3568
Q ss_pred EEEEECCCCeEEEeccCCCCCCCccceEEEEE-CC-EEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCccccc
Q 008611 274 VKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GT-SLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDH 351 (559)
Q Consensus 274 v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~ 351 (559)
++.+++.+.....+... .. ...+... ++ .|++.++.++ ...+|.+++.+.....+... .....
T Consensus 112 l~~~~~~~~~~~~~~~~----~~--~~~~~~spdg~~l~~~~~~~~----~~~l~~~~~~~~~~~~~~~~-----~~~~~ 176 (297)
T 2ojh_A 112 IYLLPSTGGTPRLMTKN----LP--SYWHGWSPDGKSFTYCGIRDQ----VFDIYSMDIDSGVETRLTHG-----EGRND 176 (297)
T ss_dssp EEEEETTCCCCEECCSS----SS--EEEEEECTTSSEEEEEEEETT----EEEEEEEETTTCCEEECCCS-----SSCEE
T ss_pred EEEEECCCCceEEeecC----CC--ccceEECCCCCEEEEEECCCC----ceEEEEEECCCCcceEcccC-----CCccc
Confidence 99999888776555421 11 2222222 34 4554554432 23588888887777665422 11123
Q ss_pred EEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEec
Q 008611 352 AAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRP 389 (559)
Q Consensus 352 ~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~ 389 (559)
++....++..+++++... ....+|.+++.......+
T Consensus 177 ~~~~s~dg~~l~~~~~~~--~~~~i~~~~~~~~~~~~~ 212 (297)
T 2ojh_A 177 GPDYSPDGRWIYFNSSRT--GQMQIWRVRVDGSSVERI 212 (297)
T ss_dssp EEEECTTSSEEEEEECTT--SSCEEEEEETTSSCEEEC
T ss_pred cceECCCCCEEEEEecCC--CCccEEEECCCCCCcEEE
Confidence 344444444444433211 134688888777776665
No 62
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=95.35 E-value=1.7 Score=41.51 Aligned_cols=146 Identities=14% Similarity=0.124 Sum_probs=78.0
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe--CCEEEEEeccCCCCCCcc
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHTKDPSEII 272 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~ 272 (559)
++.+++.|+.+ ..+.++|+.++.....-.. ....-..+.+ ++.+++.|+.+.
T Consensus 34 ~~~~l~s~~~d-----g~i~iw~~~~~~~~~~~~~---------------h~~~v~~~~~~~~~~~l~s~~~d~------ 87 (312)
T 4ery_A 34 NGEWLASSSAD-----KLIKIWGAYDGKFEKTISG---------------HKLGISDVAWSSDSNLLVSASDDK------ 87 (312)
T ss_dssp TSSEEEEEETT-----SCEEEEETTTCCEEEEECC---------------CSSCEEEEEECTTSSEEEEEETTS------
T ss_pred CCCEEEEeeCC-----CeEEEEeCCCcccchhhcc---------------CCCceEEEEEcCCCCEEEEECCCC------
Confidence 45566666633 3577888887776543211 1111222333 567777777643
Q ss_pred eEEEEECCCCeEEEeccCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccc
Q 008611 273 QVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSD 350 (559)
Q Consensus 273 ~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~ 350 (559)
.+.+||+.+.+-...-. .. .....++.+ ++.+++.|+.++ .+.+||+.+.+-...-.. ....-
T Consensus 88 ~i~vwd~~~~~~~~~~~---~~--~~~v~~~~~~~~~~~l~s~~~d~------~i~iwd~~~~~~~~~~~~----~~~~v 152 (312)
T 4ery_A 88 TLKIWDVSSGKCLKTLK---GH--SNYVFCCNFNPQSNLIVSGSFDE------SVRIWDVKTGKCLKTLPA----HSDPV 152 (312)
T ss_dssp EEEEEETTTCCEEEEEE---CC--SSCEEEEEECSSSSEEEEEETTS------CEEEEETTTCCEEEEECC----CSSCE
T ss_pred EEEEEECCCCcEEEEEc---CC--CCCEEEEEEcCCCCEEEEEeCCC------cEEEEECCCCEEEEEecC----CCCcE
Confidence 58889988876433211 01 111112222 456777777543 488899987654332111 11112
Q ss_pred cEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCee
Q 008611 351 HAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEW 386 (559)
Q Consensus 351 ~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W 386 (559)
.++....++.+++.|+.+ ..+.+||+.+...
T Consensus 153 ~~~~~~~~~~~l~~~~~d-----~~i~~wd~~~~~~ 183 (312)
T 4ery_A 153 SAVHFNRDGSLIVSSSYD-----GLCRIWDTASGQC 183 (312)
T ss_dssp EEEEECTTSSEEEEEETT-----SCEEEEETTTCCE
T ss_pred EEEEEcCCCCEEEEEeCC-----CcEEEEECCCCce
Confidence 233333455577777654 3588999887654
No 63
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=95.16 E-value=1.4 Score=47.98 Aligned_cols=156 Identities=13% Similarity=0.061 Sum_probs=80.6
Q ss_pred cCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe--CCEEEEEeccCCCCCCcceEEEEECCCC-eEEE
Q 008611 210 LSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHTKDPSEIIQVKVFDLQTC-SWST 286 (559)
Q Consensus 210 ~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~-~W~~ 286 (559)
...++++|+.+++-..+.... ........+.+ +++.++++..+.. .....++.+|+.+. .+..
T Consensus 234 ~~~l~~~d~~~~~~~~~~~~~-------------~~~~~~~~~~~spdg~~l~~~~~~~~-~~~~~v~~~d~~~g~~~~~ 299 (706)
T 2z3z_A 234 HVTVGIYHLATGKTVYLQTGE-------------PKEKFLTNLSWSPDENILYVAEVNRA-QNECKVNAYDAETGRFVRT 299 (706)
T ss_dssp EEEEEEEETTTTEEEECCCCS-------------CTTCEEEEEEECTTSSEEEEEEECTT-SCEEEEEEEETTTCCEEEE
T ss_pred eeEEEEEECCCCceEeeccCC-------------CCceeEeeEEEECCCCEEEEEEeCCC-CCeeEEEEEECCCCceeeE
Confidence 357999999988765543210 11112223333 5655555444322 34568999999998 7766
Q ss_pred eccCCCCC-CCccceEEEEE--CCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccccE-EEEEcC-CEE
Q 008611 287 LKTYGKPP-VSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHA-AAVHAE-RYL 361 (559)
Q Consensus 287 ~~~~g~~p-~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~-~~~~~~-~~l 361 (559)
+....... ..........- ++++++.+..++ ...+|.+|........+... ... ... .++..+ +.|
T Consensus 300 ~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g----~~~l~~~~~~~~~~~~l~~~---~~~--v~~~~~~spdg~~l 370 (706)
T 2z3z_A 300 LFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDG----WNHLYLYDTTGRLIRQVTKG---EWE--VTNFAGFDPKGTRL 370 (706)
T ss_dssp EEEEECSSCCCCCSCCEECTTCSSEEEEEECTTS----SCEEEEEETTSCEEEECCCS---SSC--EEEEEEECTTSSEE
T ss_pred EEEccCCCeECccCCceeecCCCCEEEEEEccCC----ccEEEEEECCCCEEEecCCC---CeE--EEeeeEEcCCCCEE
Confidence 64211100 00001112222 567655554432 35688899777766666321 111 112 233334 445
Q ss_pred EEEcCCCCCCCcCceEEEECCCCeeEec
Q 008611 362 LIFGGGSHAACFNDLHVLDLQTMEWSRP 389 (559)
Q Consensus 362 ~v~GG~~~~~~~~dv~~~d~~~~~W~~~ 389 (559)
++.+.. .......+|.+|+.+.....+
T Consensus 371 ~~~~~~-~~~~~~~l~~~d~~~~~~~~l 397 (706)
T 2z3z_A 371 YFESTE-ASPLERHFYCIDIKGGKTKDL 397 (706)
T ss_dssp EEEESS-SCTTCBEEEEEETTCCCCEES
T ss_pred EEEecC-CCCceEEEEEEEcCCCCceec
Confidence 555443 222235789999988776665
No 64
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=95.02 E-value=0.77 Score=43.64 Aligned_cols=112 Identities=9% Similarity=-0.008 Sum_probs=74.7
Q ss_pred ccceeEEeCCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceE
Q 008611 247 AGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLH 326 (559)
Q Consensus 247 ~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~ 326 (559)
+..+....++.||+..|..+. +..+|+.+++=..-. ++..-.+.+++..+++||+.... .+.++
T Consensus 56 ftqGL~~~~~~Ly~stG~~g~------v~~iD~~Tgkv~~~~----l~~~~FgeGit~~g~~Ly~ltw~------~~~v~ 119 (268)
T 3nok_A 56 FTQGLVFHQGHFFESTGHQGT------LRQLSLESAQPVWME----RLGNIFAEGLASDGERLYQLTWT------EGLLF 119 (268)
T ss_dssp CEEEEEEETTEEEEEETTTTE------EEECCSSCSSCSEEE----ECTTCCEEEEEECSSCEEEEESS------SCEEE
T ss_pred ccceEEEECCEEEEEcCCCCE------EEEEECCCCcEEeEE----CCCCcceeEEEEeCCEEEEEEcc------CCEEE
Confidence 345666668999999887532 899999988633221 23333455677888999998653 45799
Q ss_pred EEECCCCceEE-ecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeE
Q 008611 327 ILDLETMTWDE-IDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWS 387 (559)
Q Consensus 327 ~yd~~t~~W~~-~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~ 387 (559)
+||+.+.+-.. ++. +-.+.+++. .++.||+.-| .+.++.+|+.+.+-.
T Consensus 120 V~D~~Tl~~~~ti~~------~~eGwGLt~-Dg~~L~vSdG------s~~l~~iDp~T~~v~ 168 (268)
T 3nok_A 120 TWSGMPPQRERTTRY------SGEGWGLCY-WNGKLVRSDG------GTMLTFHEPDGFALV 168 (268)
T ss_dssp EEETTTTEEEEEEEC------SSCCCCEEE-ETTEEEEECS------SSEEEEECTTTCCEE
T ss_pred EEECCcCcEEEEEeC------CCceeEEec-CCCEEEEECC------CCEEEEEcCCCCeEE
Confidence 99998876543 322 122344444 4677888865 357999999987543
No 65
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=94.76 E-value=1.9 Score=41.54 Aligned_cols=145 Identities=6% Similarity=-0.024 Sum_probs=78.2
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEE-eCC-EEEEEeccCCCCCCcc
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIP-WEN-KLLSIAGHTKDPSEII 272 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~~~-~lyv~GG~~~~~~~~~ 272 (559)
++.+|+.++. -+.+.+||+.+++....-... .....++. -++ .+|+.+... .
T Consensus 9 ~~~~~v~~~~-----~~~v~~~d~~~~~~~~~~~~~---------------~~~~~~~~s~dg~~l~~~~~~~------~ 62 (331)
T 3u4y_A 9 SNFGIVVEQH-----LRRISFFSTDTLEILNQITLG---------------YDFVDTAITSDCSNVVVTSDFC------Q 62 (331)
T ss_dssp CCEEEEEEGG-----GTEEEEEETTTCCEEEEEECC---------------CCEEEEEECSSSCEEEEEESTT------C
T ss_pred CCEEEEEecC-----CCeEEEEeCcccceeeeEEcc---------------CCcceEEEcCCCCEEEEEeCCC------C
Confidence 5678888652 357999999999886553321 11112222 244 577665532 3
Q ss_pred eEEEEECCCCeE-EEeccCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCccc
Q 008611 273 QVKVFDLQTCSW-STLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRS 349 (559)
Q Consensus 273 ~v~~yd~~t~~W-~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~ 349 (559)
.++.||+.+++. ......+.. ++ ++++.. +..|| .+...+. ...+++||+.+.+....-..+ ..
T Consensus 63 ~i~~~d~~~~~~~~~~~~~~~~--~~--~~~~~s~dg~~l~-~~~~~~~---~~~i~v~d~~~~~~~~~~~~~-----~~ 129 (331)
T 3u4y_A 63 TLVQIETQLEPPKVVAIQEGQS--SM--ADVDITPDDQFAV-TVTGLNH---PFNMQSYSFLKNKFISTIPIP-----YD 129 (331)
T ss_dssp EEEEEECSSSSCEEEEEEECSS--CC--CCEEECTTSSEEE-ECCCSSS---SCEEEEEETTTTEEEEEEECC-----TT
T ss_pred eEEEEECCCCceeEEecccCCC--Cc--cceEECCCCCEEE-EecCCCC---cccEEEEECCCCCeEEEEECC-----CC
Confidence 799999998875 222211111 11 212332 33566 3322211 126999999888765443221 12
Q ss_pred ccEEEEEcCC-EEEEEcCCCCCCCcCc-eEEEECCC
Q 008611 350 DHAAAVHAER-YLLIFGGGSHAACFND-LHVLDLQT 383 (559)
Q Consensus 350 ~~~~~~~~~~-~l~v~GG~~~~~~~~d-v~~~d~~~ 383 (559)
.+++++..++ +||+.+... +. +++|++..
T Consensus 130 ~~~~~~spdg~~l~~~~~~~-----~~~i~~~~~~~ 160 (331)
T 3u4y_A 130 AVGIAISPNGNGLILIDRSS-----ANTVRRFKIDA 160 (331)
T ss_dssp EEEEEECTTSSCEEEEEETT-----TTEEEEEEECT
T ss_pred ccceEECCCCCEEEEEecCC-----CceEEEEEECC
Confidence 2455665554 577765532 34 66777653
No 66
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=94.52 E-value=0.1 Score=38.28 Aligned_cols=43 Identities=14% Similarity=0.118 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
+.+|+..++...++|++.+..+..|+.++++++..+++|..||
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777777777888888888888888888877765
No 67
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=94.47 E-value=2.7 Score=40.10 Aligned_cols=146 Identities=13% Similarity=0.060 Sum_probs=80.1
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe--CCEEEEEeccCCCCCCcc
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHTKDPSEII 272 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~ 272 (559)
++.+++.|+.+ ..+.+||+.+.+....-.. ... ....+.+ ++..++.|+.+ .
T Consensus 152 ~~~~l~~~~~d-----g~v~~~d~~~~~~~~~~~~-------------~~~--~i~~~~~~~~~~~l~~~~~d------g 205 (337)
T 1gxr_A 152 DSKVCFSCCSD-----GNIAVWDLHNQTLVRQFQG-------------HTD--GASCIDISNDGTKLWTGGLD------N 205 (337)
T ss_dssp TSSEEEEEETT-----SCEEEEETTTTEEEEEECC-------------CSS--CEEEEEECTTSSEEEEEETT------S
T ss_pred CCCEEEEEeCC-----CcEEEEeCCCCceeeeeec-------------ccC--ceEEEEECCCCCEEEEEecC------C
Confidence 45566666633 3588999988764432110 111 1222233 56677777653 3
Q ss_pred eEEEEECCCCeEEEeccCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCccccc
Q 008611 273 QVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDH 351 (559)
Q Consensus 273 ~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~ 351 (559)
.+..||+.+.+-..... .+.+ -.+++.. ++.++++|+.+ +.+.+||+.+..-..+.. ....-.
T Consensus 206 ~i~~~d~~~~~~~~~~~---~~~~--v~~~~~s~~~~~l~~~~~~------~~i~~~~~~~~~~~~~~~-----~~~~v~ 269 (337)
T 1gxr_A 206 TVRSWDLREGRQLQQHD---FTSQ--IFSLGYCPTGEWLAVGMES------SNVEVLHVNKPDKYQLHL-----HESCVL 269 (337)
T ss_dssp EEEEEETTTTEEEEEEE---CSSC--EEEEEECTTSSEEEEEETT------SCEEEEETTSSCEEEECC-----CSSCEE
T ss_pred cEEEEECCCCceEeeec---CCCc--eEEEEECCCCCEEEEEcCC------CcEEEEECCCCCeEEEcC-----Ccccee
Confidence 58899998876443321 1111 1222222 45667777643 348899998776444321 112223
Q ss_pred EEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeE
Q 008611 352 AAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWS 387 (559)
Q Consensus 352 ~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~ 387 (559)
++....++.+++.|+.+ ..+.+||+.+..-.
T Consensus 270 ~~~~~~~~~~l~~~~~d-----g~i~~~~~~~~~~~ 300 (337)
T 1gxr_A 270 SLKFAYCGKWFVSTGKD-----NLLNAWRTPYGASI 300 (337)
T ss_dssp EEEECTTSSEEEEEETT-----SEEEEEETTTCCEE
T ss_pred EEEECCCCCEEEEecCC-----CcEEEEECCCCeEE
Confidence 34444455567777643 45889998876543
No 68
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=94.41 E-value=7.1 Score=42.58 Aligned_cols=131 Identities=18% Similarity=0.170 Sum_probs=72.0
Q ss_pred eeEEEECCEEEEEccCCCCcccCcEEEEEcCCC--eEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCC
Q 008611 189 HGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSW--AWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTK 266 (559)
Q Consensus 189 ~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~ 266 (559)
.+-++.++.||+.+. .+.++.+|..|+ .|+.-....... ...........+.+..+++||+...
T Consensus 64 ~~P~v~~g~vyv~~~------~~~v~AlD~~tG~~~W~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~v~v~~~--- 129 (689)
T 1yiq_A 64 ATPIVVDGVMYTTGP------FSVVYALDARDGRLIWKYDPQSDRHR-----AGEACCDAVNRGVAVWKGKVYVGVL--- 129 (689)
T ss_dssp CCCEEETTEEEEECG------GGCEEEEETTTCCEEEEECCCCCGGG-----GGGCTTCSCCCCCEEETTEEEEECT---
T ss_pred ecCEEECCEEEEEcC------CCeEEEEECCCCceeEEEcCCCCccc-----cccccccCCCCccEEECCEEEEEcc---
Confidence 344677999999865 256999999886 487542211000 0000000112234556888887542
Q ss_pred CCCCcceEEEEECCCCe--EEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCCc--eEEe
Q 008611 267 DPSEIIQVKVFDLQTCS--WSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMT--WDEI 338 (559)
Q Consensus 267 ~~~~~~~v~~yd~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~ 338 (559)
...++.+|..|++ |+.-.............+.++.++.+|+-.+... ......++.||..|.+ |+.-
T Consensus 130 ----dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~-~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 130 ----DGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAE-FGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp ----TSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTT-TCCBCEEEEEETTTCCEEEEEE
T ss_pred ----CCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCc-cCCCCEEEEEECCCCcEEEEec
Confidence 2468999998875 8865420111111122233456888877432211 1124579999998875 8764
No 69
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=94.28 E-value=1.3 Score=43.51 Aligned_cols=156 Identities=8% Similarity=0.132 Sum_probs=82.1
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe--CCEEEEEeccCCCCCCcc
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHTKDPSEII 272 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~ 272 (559)
++.+++.||.+ ..+.++|+.++.|....... ......-.++.+ ++.+++.|+.+.
T Consensus 27 ~g~~las~~~D-----~~i~iw~~~~~~~~~~~~~~------------~~h~~~v~~~~~sp~g~~l~s~s~D~------ 83 (345)
T 3fm0_A 27 AGTLLASCGGD-----RRIRIWGTEGDSWICKSVLS------------EGHQRTVRKVAWSPCGNYLASASFDA------ 83 (345)
T ss_dssp TSSCEEEEETT-----SCEEEEEEETTEEEEEEEEC------------SSCSSCEEEEEECTTSSEEEEEETTS------
T ss_pred CCCEEEEEcCC-----CeEEEEEcCCCcceeeeeec------------cccCCcEEEEEECCCCCEEEEEECCC------
Confidence 56677777743 35788888888876443221 001111222333 577788887654
Q ss_pred eEEEEECCCCeEEEeccCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCcCceEEEECCCC-ceEEecCCCCCCCccc
Q 008611 273 QVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETM-TWDEIDAVGVPPSPRS 349 (559)
Q Consensus 273 ~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~-~W~~~~~~~~~p~~r~ 349 (559)
.+.++|..+..+..+... ..-......+.+ ++.+++.|+.++ .+.+||+.+. .+..+.... .....
T Consensus 84 ~v~iw~~~~~~~~~~~~~---~~h~~~v~~v~~sp~~~~l~s~s~D~------~v~iwd~~~~~~~~~~~~~~--~h~~~ 152 (345)
T 3fm0_A 84 TTCIWKKNQDDFECVTTL---EGHENEVKSVAWAPSGNLLATCSRDK------SVWVWEVDEEDEYECVSVLN--SHTQD 152 (345)
T ss_dssp CEEEEEECCC-EEEEEEE---CCCSSCEEEEEECTTSSEEEEEETTS------CEEEEEECTTSCEEEEEEEC--CCCSC
T ss_pred cEEEEEccCCCeEEEEEc---cCCCCCceEEEEeCCCCEEEEEECCC------eEEEEECCCCCCeEEEEEec--CcCCC
Confidence 366777777766544321 111111122222 457777777643 4778887654 333332211 11111
Q ss_pred ccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEec
Q 008611 350 DHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRP 389 (559)
Q Consensus 350 ~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~ 389 (559)
-.+++...++.+++.|+.+ ..+.+||..+..|..+
T Consensus 153 v~~~~~~p~~~~l~s~s~d-----~~i~~w~~~~~~~~~~ 187 (345)
T 3fm0_A 153 VKHVVWHPSQELLASASYD-----DTVKLYREEEDDWVCC 187 (345)
T ss_dssp EEEEEECSSSSCEEEEETT-----SCEEEEEEETTEEEEE
T ss_pred eEEEEECCCCCEEEEEeCC-----CcEEEEEecCCCEEEE
Confidence 2233444455577777654 3477888888877643
No 70
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=94.20 E-value=0.88 Score=50.66 Aligned_cols=157 Identities=7% Similarity=0.020 Sum_probs=85.3
Q ss_pred CcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEE-eCCEEEEEeccCCCCCCcceEEEEECCCCeEEEecc
Q 008611 211 SDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIP-WENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKT 289 (559)
Q Consensus 211 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~ 289 (559)
+.+++||+.+++|........ ....+.... .+++. -++.|++-.. ..+++||+.+.++ .+..
T Consensus 471 ~Gl~~~~~~~~~~~~~~~~~~-------~~~~~~~~i-~~i~~d~~g~lWigt~--------~Gl~~~~~~~~~~-~~~~ 533 (795)
T 4a2l_A 471 SALVRFNPEQRSFTTIEKEKD-------GTPVVSKQI-TTLFRDSHKRLWIGGE--------EGLSVFKQEGLDI-QKAS 533 (795)
T ss_dssp SCEEEEETTTTEEEECCBCTT-------CCBCCCCCE-EEEEECTTCCEEEEES--------SCEEEEEEETTEE-EECC
T ss_pred CceeEEeCCCCeEEEcccccc-------ccccCCceE-EEEEECCCCCEEEEeC--------CceEEEeCCCCeE-EEec
Confidence 358999999999987743210 000111111 12222 2567777432 2488999999888 5431
Q ss_pred CCCCC-CCccceEEEEE--CCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEcC
Q 008611 290 YGKPP-VSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGG 366 (559)
Q Consensus 290 ~g~~p-~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG 366 (559)
....+ .+.....+... ++.|++... +.+++||+.+.++.........|... -.+++.-.++.|++.+.
T Consensus 534 ~~~~~~l~~~~i~~i~~d~~g~lWigT~--------~Gl~~~d~~~~~~~~~~~~~gl~~~~-i~~i~~d~~g~lWi~t~ 604 (795)
T 4a2l_A 534 ILPVSNVTKLFTNCIYEASNGIIWVGTR--------EGFYCFNEKDKQIKRYNTTNGLPNNV-VYGILEDSFGRLWLSTN 604 (795)
T ss_dssp CSCSCGGGGSCEEEEEECTTSCEEEEES--------SCEEEEETTTTEEEEECGGGTCSCSC-EEEEEECTTSCEEEEET
T ss_pred CCCCCCCCCCeeEEEEECCCCCEEEEeC--------CCceeECCCCCcEEEeCCCCCCchhh-eEEEEECCCCCEEEEcC
Confidence 10011 11111122222 457776432 24899999999998775432233322 23333434566887653
Q ss_pred CCCCCCcCceEEEECCCCeeEeccCCCCCCCCcc
Q 008611 367 GSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRA 400 (559)
Q Consensus 367 ~~~~~~~~dv~~~d~~~~~W~~~~~~~~~p~~R~ 400 (559)
+.+.+||+.+.++.......-++...+
T Consensus 605 -------~Gl~~~~~~~~~~~~~~~~dGl~~~~f 631 (795)
T 4a2l_A 605 -------RGISCFNPETEKFRNFTESDGLQSNQF 631 (795)
T ss_dssp -------TEEEEEETTTTEEEEECGGGTCSCSCE
T ss_pred -------CceEEEcCCCCcEEEcCCcCCCccccC
Confidence 358999999999887643323444433
No 71
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=94.19 E-value=1.8 Score=41.78 Aligned_cols=159 Identities=14% Similarity=0.124 Sum_probs=79.6
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe-CC-EEEEEeccCCCCCCcc
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-EN-KLLSIAGHTKDPSEII 272 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~ 272 (559)
++.+|+.++. .+.++++|+.+++....-... ....-+.++.. ++ .+|+.+.. ..
T Consensus 10 ~~~~~v~~~~-----~~~v~~~d~~~~~~~~~~~~~-------------~~~~~~~~~~s~dg~~~~v~~~~------~~ 65 (349)
T 1jmx_B 10 GHEYMIVTNY-----PNNLHVVDVASDTVYKSCVMP-------------DKFGPGTAMMAPDNRTAYVLNNH------YG 65 (349)
T ss_dssp TCEEEEEEET-----TTEEEEEETTTTEEEEEEECS-------------SCCSSCEEEECTTSSEEEEEETT------TT
T ss_pred CCEEEEEeCC-----CCeEEEEECCCCcEEEEEecC-------------CCCCCceeEECCCCCEEEEEeCC------CC
Confidence 6778888763 357999999998765432221 10011222222 44 57776533 24
Q ss_pred eEEEEECCCCeEEEeccCCCCCC--CccceEEEEE-CC-EEEEEcCc--CCCCCC---cCceEEEECCCCceEEecCCCC
Q 008611 273 QVKVFDLQTCSWSTLKTYGKPPV--SRGGQSVTLV-GT-SLVIFGGE--DAKRSL---LNDLHILDLETMTWDEIDAVGV 343 (559)
Q Consensus 273 ~v~~yd~~t~~W~~~~~~g~~p~--~r~~~~~~~~-~~-~lyv~GG~--~~~~~~---~~~~~~yd~~t~~W~~~~~~~~ 343 (559)
.+++||+.+++.......+..|. ...-+.++.. ++ .||+.+.. .....+ .+.+++||+.+.+-......
T Consensus 66 ~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-- 143 (349)
T 1jmx_B 66 DIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT-- 143 (349)
T ss_dssp EEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEE--
T ss_pred cEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeee--
Confidence 69999999887554322111111 1111223333 34 55554421 000000 25799999877432111000
Q ss_pred CCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeE
Q 008611 344 PPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWS 387 (559)
Q Consensus 344 ~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~ 387 (559)
.+.++.-+++++..++.+|+.++ +++++|+.+.+..
T Consensus 144 ~~~~~~~~~~~~s~dg~l~~~~~--------~i~~~d~~~~~~~ 179 (349)
T 1jmx_B 144 FPMPRQVYLMRAADDGSLYVAGP--------DIYKMDVKTGKYT 179 (349)
T ss_dssp EECCSSCCCEEECTTSCEEEESS--------SEEEECTTTCCEE
T ss_pred ccCCCcccceeECCCCcEEEccC--------cEEEEeCCCCcee
Confidence 01222334455555656776432 3899998876543
No 72
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=94.17 E-value=1 Score=49.91 Aligned_cols=106 Identities=10% Similarity=0.194 Sum_probs=62.9
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe--C--CEEEEEeccCCCCCC
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--E--NKLLSIAGHTKDPSE 270 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~--~~lyv~GG~~~~~~~ 270 (559)
++.+++.||.+ ..+.+||+.+.++..+.... .....-.++.+ + +.+++.||.++
T Consensus 20 dg~~latg~~d-----g~I~vwd~~~~~~~~~~~l~-------------~h~~~V~~l~~s~~~~~~~l~s~s~Dg---- 77 (753)
T 3jro_A 20 YGKRLATCSSD-----KTIKIFEVEGETHKLIDTLT-------------GHEGPVWRVDWAHPKFGTILASCSYDG---- 77 (753)
T ss_dssp SSCCEEEEETT-----TEEEEEEEETTEEEEEEEEC-------------CCSSCEEEEEECCTTSCSEEEEEETTS----
T ss_pred CCCeEEEEECC-----CcEEEEecCCCCCccceecc-------------CCcCceEEEEecCCCCCCEEEEEeCCC----
Confidence 45566666643 35888888888887765542 11112223333 3 67888888754
Q ss_pred cceEEEEECCCCeEEEeccCCCCCCCccceEEEEE--C--CEEEEEcCcCCCCCCcCceEEEECCCC
Q 008611 271 IIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--G--TSLVIFGGEDAKRSLLNDLHILDLETM 333 (559)
Q Consensus 271 ~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~--~~lyv~GG~~~~~~~~~~~~~yd~~t~ 333 (559)
.+.++|+.++.|..+... ........++.+ + +.+++.|+.+ ..+.+||+.+.
T Consensus 78 --~I~vwd~~~~~~~~~~~~---~~h~~~V~~v~~sp~~~~~~l~sgs~d------g~I~vwdl~~~ 133 (753)
T 3jro_A 78 --KVLIWKEENGRWSQIAVH---AVHSASVNSVQWAPHEYGPLLLVASSD------GKVSVVEFKEN 133 (753)
T ss_dssp --CEEEEEEETTEEEEEEEE---CCCSSCEEEEEECCGGGCSEEEEEETT------SEEEEEECCSS
T ss_pred --eEEEEECCCCcccccccc---cCCCCCeEEEEECCCCCCCEEEEEeCC------CcEEEEEeecC
Confidence 488899999988776532 111122222233 3 5677778754 34788888765
No 73
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=94.11 E-value=3.8 Score=41.44 Aligned_cols=147 Identities=14% Similarity=0.234 Sum_probs=78.4
Q ss_pred ECCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCCCCCcce
Q 008611 194 VQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQ 273 (559)
Q Consensus 194 ~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~ 273 (559)
.++.+++.|+.+ ..+.++|+.+++-... .. .....-.++.+++.+++.|+.++ .
T Consensus 181 ~~~~~l~sg~~d-----g~i~vwd~~~~~~~~~--~~-------------~h~~~v~~l~~~~~~l~s~s~dg------~ 234 (435)
T 1p22_A 181 YDERVIITGSSD-----STVRVWDVNTGEMLNT--LI-------------HHCEAVLHLRFNNGMMVTCSKDR------S 234 (435)
T ss_dssp CCSSEEEEEETT-----SCEEEEESSSCCEEEE--EC-------------CCCSCEEEEECCTTEEEEEETTS------C
T ss_pred ECCCEEEEEcCC-----CeEEEEECCCCcEEEE--Ec-------------CCCCcEEEEEEcCCEEEEeeCCC------c
Confidence 367777887743 3588999988764322 11 11122234445666777777654 4
Q ss_pred EEEEECCCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccccEE
Q 008611 274 VKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAA 353 (559)
Q Consensus 274 v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~ 353 (559)
+..||+.+..-..... ..........+...++..++.|+.+ ..+.+||+.+..-...-.. ... ...+
T Consensus 235 i~vwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~----~~~-~v~~ 301 (435)
T 1p22_A 235 IAVWDMASPTDITLRR--VLVGHRAAVNVVDFDDKYIVSASGD------RTIKVWNTSTCEFVRTLNG----HKR-GIAC 301 (435)
T ss_dssp EEEEECSSSSCCEEEE--EECCCSSCEEEEEEETTEEEEEETT------SEEEEEETTTCCEEEEEEC----CSS-CEEE
T ss_pred EEEEeCCCCCCceeee--EecCCCCcEEEEEeCCCEEEEEeCC------CeEEEEECCcCcEEEEEcC----CCC-cEEE
Confidence 8888887764221100 0011111222333356666666653 3588899887654332111 111 1122
Q ss_pred EEEcCCEEEEEcCCCCCCCcCceEEEECCCCe
Q 008611 354 AVHAERYLLIFGGGSHAACFNDLHVLDLQTME 385 (559)
Q Consensus 354 ~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~ 385 (559)
+...++ +++.|+.+ +.+.+||+.+..
T Consensus 302 ~~~~~~-~l~~g~~d-----g~i~iwd~~~~~ 327 (435)
T 1p22_A 302 LQYRDR-LVVSGSSD-----NTIRLWDIECGA 327 (435)
T ss_dssp EEEETT-EEEEEETT-----SCEEEEETTTCC
T ss_pred EEeCCC-EEEEEeCC-----CeEEEEECCCCC
Confidence 333455 66777643 358899988764
No 74
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=94.10 E-value=2.4 Score=42.37 Aligned_cols=154 Identities=12% Similarity=0.097 Sum_probs=79.5
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEE-----EeeeccccCCCCCCCCCCCCCCccceeEEe--CC-EEEEEeccCC
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWS-----KIQAKAVAESTESPSPALLTPCAGHSLIPW--EN-KLLSIAGHTK 266 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~-----~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~-~lyv~GG~~~ 266 (559)
++.+++.|+.+ ..+.+||+.++... .+.... .....-.++.+ ++ .+++.|+.+.
T Consensus 93 ~~~~l~s~s~d-----g~v~vw~~~~~~~~~~~~~~~~~~~-------------~h~~~v~~~~~~p~~~~~l~s~~~dg 154 (402)
T 2aq5_A 93 NDNVIASGSED-----CTVMVWEIPDGGLVLPLREPVITLE-------------GHTKRVGIVAWHPTAQNVLLSAGCDN 154 (402)
T ss_dssp CTTEEEEEETT-----SEEEEEECCTTCCSSCBCSCSEEEE-------------CCSSCEEEEEECSSBTTEEEEEETTS
T ss_pred CCCEEEEEeCC-----CeEEEEEccCCCCccccCCceEEec-------------CCCCeEEEEEECcCCCCEEEEEcCCC
Confidence 46677777743 35888888876431 111110 00111122223 33 5777777653
Q ss_pred CCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCC
Q 008611 267 DPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPP 345 (559)
Q Consensus 267 ~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p 345 (559)
.+.++|+.+.+....-.. ......-.+++.. ++.+++.|+.+ +.+.+||+.+.+-...-..+ .
T Consensus 155 ------~i~iwd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~--~ 218 (402)
T 2aq5_A 155 ------VILVWDVGTGAAVLTLGP--DVHPDTIYSVDWSRDGALICTSCRD------KRVRVIEPRKGTVVAEKDRP--H 218 (402)
T ss_dssp ------CEEEEETTTTEEEEEECT--TTCCSCEEEEEECTTSSCEEEEETT------SEEEEEETTTTEEEEEEECS--S
T ss_pred ------EEEEEECCCCCccEEEec--CCCCCceEEEEECCCCCEEEEEecC------CcEEEEeCCCCceeeeeccC--C
Confidence 488999998875543210 0011111222222 55667777653 35889999876543322011 1
Q ss_pred CcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCC
Q 008611 346 SPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTM 384 (559)
Q Consensus 346 ~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~ 384 (559)
......+++...++.+++.|.... .-..+.+||+.+.
T Consensus 219 ~~~~~~~~~~~~~~~~l~~g~~~~--~d~~i~iwd~~~~ 255 (402)
T 2aq5_A 219 EGTRPVHAVFVSEGKILTTGFSRM--SERQVALWDTKHL 255 (402)
T ss_dssp CSSSCCEEEECSTTEEEEEEECTT--CCEEEEEEETTBC
T ss_pred CCCcceEEEEcCCCcEEEEeccCC--CCceEEEEcCccc
Confidence 111123455556777777773110 1246889998764
No 75
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=94.04 E-value=1.1 Score=49.04 Aligned_cols=127 Identities=14% Similarity=0.039 Sum_probs=63.7
Q ss_pred CCEEEEEccC-CCCcccCcEEEEEcCCCeEEEeeeccccCC---CCCCCCCCC--CCC------ccceeEEeCCEEEEEe
Q 008611 195 QDKMYIYGGN-HNGRYLSDMHILDLRSWAWSKIQAKAVAES---TESPSPALL--TPC------AGHSLIPWENKLLSIA 262 (559)
Q Consensus 195 ~~~lyv~GG~-~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~---~~~~~~~~p--~~r------~~~~~~~~~~~lyv~G 262 (559)
+++.+++++. +++.....++++|+.+++...+........ .-+...... ..| .......-+++.++++
T Consensus 47 dG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~ 126 (741)
T 2ecf_A 47 DGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLFP 126 (741)
T ss_dssp TSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSEEEEE
T ss_pred CCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEEEE
Confidence 4555555554 443445689999999998876654320000 000000000 000 1111222266666665
Q ss_pred ccCCCCCCcceEEEEECCCC---eEEEeccCCCCCCCccceEEEE-ECCEEEEEcCcCCCCCCcCceEEEECCCCceEEe
Q 008611 263 GHTKDPSEIIQVKVFDLQTC---SWSTLKTYGKPPVSRGGQSVTL-VGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEI 338 (559)
Q Consensus 263 G~~~~~~~~~~v~~yd~~t~---~W~~~~~~g~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~ 338 (559)
+. ..++++|+.++ .-..+... ... ...++. -+++.++++.. +.|+++|+.+.....+
T Consensus 127 ~~-------~~i~~~d~~~~~~~~~~~l~~~----~~~-~~~~~~SPDG~~la~~~~-------~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 127 LG-------GELYLYDLKQEGKAAVRQLTHG----EGF-ATDAKLSPKGGFVSFIRG-------RNLWVIDLASGRQMQL 187 (741)
T ss_dssp ET-------TEEEEEESSSCSTTSCCBCCCS----SSC-EEEEEECTTSSEEEEEET-------TEEEEEETTTTEEEEC
T ss_pred eC-------CcEEEEECCCCCcceEEEcccC----Ccc-cccccCCCCCCEEEEEeC-------CcEEEEecCCCCEEEe
Confidence 53 57999999887 54433211 111 112222 25555555532 3699999998877766
Q ss_pred cC
Q 008611 339 DA 340 (559)
Q Consensus 339 ~~ 340 (559)
..
T Consensus 188 ~~ 189 (741)
T 2ecf_A 188 TA 189 (741)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 76
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=93.97 E-value=8.4 Score=41.78 Aligned_cols=130 Identities=15% Similarity=0.110 Sum_probs=71.7
Q ss_pred eeEEEECCEEEEEccCCCCcccCcEEEEEcCCC--eEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCC
Q 008611 189 HGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSW--AWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTK 266 (559)
Q Consensus 189 ~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~ 266 (559)
.+-++.++.||+... .+.++.+|..|+ .|+.-....... ...........+.+..+++||+...
T Consensus 60 ~~P~v~~g~vyv~~~------~~~v~AlD~~tG~~~W~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~v~~~--- 125 (668)
T 1kv9_A 60 ATPLFHDGVIYTSMS------WSRVIAVDAASGKELWRYDPEVAKVK-----ARTSCCDAVNRGVALWGDKVYVGTL--- 125 (668)
T ss_dssp CCCEEETTEEEEEEG------GGEEEEEETTTCCEEEEECCCCCGGG-----GGGCTTCSCCCCCEEEBTEEEEECT---
T ss_pred cCCEEECCEEEEECC------CCeEEEEECCCChhceEECCCCCccc-----cccccccCCccceEEECCEEEEEcC---
Confidence 344678999999865 246999999886 488642211000 0000001112234556788887532
Q ss_pred CCCCcceEEEEECCCCe--EEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCCc--eEEe
Q 008611 267 DPSEIIQVKVFDLQTCS--WSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMT--WDEI 338 (559)
Q Consensus 267 ~~~~~~~v~~yd~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~ 338 (559)
...++.+|..+++ |+.-... .........+.++.++.+|+..+... ......++.||+.|.+ |+.-
T Consensus 126 ----dg~l~alD~~tG~~~W~~~~~~-~~~~~~~~~~P~v~~~~v~vg~~~~~-~~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 126 ----DGRLIALDAKTGKAIWSQQTTD-PAKPYSITGAPRVVKGKVIIGNGGAE-YGVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp ----TSEEEEEETTTCCEEEEEECSC-TTSSCBCCSCCEEETTEEEECCBCTT-TCCBCEEEEEETTTCCEEEEEE
T ss_pred ----CCEEEEEECCCCCEeeeeccCC-CCCcceecCCCEEECCEEEEeCCCCC-cCCCCEEEEEECCCCcEEEEec
Confidence 2469999998875 8875421 11111122233456788776432211 1124579999998764 8764
No 77
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=93.94 E-value=0.55 Score=52.04 Aligned_cols=150 Identities=14% Similarity=0.149 Sum_probs=78.9
Q ss_pred CEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe--C--CEEEEEeccCCCCCCc
Q 008611 196 DKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--E--NKLLSIAGHTKDPSEI 271 (559)
Q Consensus 196 ~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~--~~lyv~GG~~~~~~~~ 271 (559)
+.+++.||.+ ..+.+||+.++.|..+.... .....-.++.+ + +.+++.||.++
T Consensus 67 ~~~l~s~s~D-----g~I~vwd~~~~~~~~~~~~~-------------~h~~~V~~v~~sp~~~~~~l~sgs~dg----- 123 (753)
T 3jro_A 67 GTILASCSYD-----GKVLIWKEENGRWSQIAVHA-------------VHSASVNSVQWAPHEYGPLLLVASSDG----- 123 (753)
T ss_dssp CSEEEEEETT-----SCEEEEEEETTEEEEEEEEC-------------CCSSCEEEEEECCGGGCSEEEEEETTS-----
T ss_pred CCEEEEEeCC-----CeEEEEECCCCccccccccc-------------CCCCCeEEEEECCCCCCCEEEEEeCCC-----
Confidence 5677777743 35889999999887776543 11122223333 3 67888887643
Q ss_pred ceEEEEECCCCeEEEeccCCCCCCCccceEEEEE--------------CCEEEEEcCcCCCCCCcCceEEEECCCC--ce
Q 008611 272 IQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--------------GTSLVIFGGEDAKRSLLNDLHILDLETM--TW 335 (559)
Q Consensus 272 ~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--------------~~~lyv~GG~~~~~~~~~~~~~yd~~t~--~W 335 (559)
.+.+||+.+..-.........+.+. .++... ++.+++.|+.++ .+.+||+.+. .+
T Consensus 124 -~I~vwdl~~~~~~~~~~~~~~~~~v--~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg------~I~iwd~~~~~~~~ 194 (753)
T 3jro_A 124 -KVSVVEFKENGTTSPIIIDAHAIGV--NSASWAPATIEEDGEHNGTKESRKFVTGGADN------LVKIWKYNSDAQTY 194 (753)
T ss_dssp -EEEEEECCSSSCCCCEEEECCSSCE--EEEEECCCC---------CGGGCCEEEEETTS------CEEEEEEETTTTEE
T ss_pred -cEEEEEeecCCCcceeEeecCCCce--EEEEecCcccccccccccCCCCCEEEEEECCC------eEEEEeccCCcccc
Confidence 5888888765211110000011111 111111 246677776543 3677776544 34
Q ss_pred EEecCCCCCCCcccccEEEEEcC---CEEEEEcCCCCCCCcCceEEEECCCC
Q 008611 336 DEIDAVGVPPSPRSDHAAAVHAE---RYLLIFGGGSHAACFNDLHVLDLQTM 384 (559)
Q Consensus 336 ~~~~~~~~~p~~r~~~~~~~~~~---~~l~v~GG~~~~~~~~dv~~~d~~~~ 384 (559)
..+.... .....-.+++...+ +.+++.||.+ ..+.+||+.+.
T Consensus 195 ~~~~~~~--~h~~~V~~l~~sp~~~~~~~l~s~s~D-----g~I~iwd~~~~ 239 (753)
T 3jro_A 195 VLESTLE--GHSDWVRDVAWSPTVLLRSYLASVSQD-----RTCIIWTQDNE 239 (753)
T ss_dssp EEEEEEC--CCSSCEEEEEECCCCSSSEEEEEEESS-----SCEEEEEESSS
T ss_pred eeeeeec--CCCCcEEEEEeccCCCCCCEEEEEecC-----CEEEEecCCCC
Confidence 4332221 11222234444445 6788888754 34778887764
No 78
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=93.91 E-value=4.5 Score=38.41 Aligned_cols=162 Identities=13% Similarity=0.113 Sum_probs=81.5
Q ss_pred CCEEEEEccCC--CCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe-C-CEEEEEeccCCCCCC
Q 008611 195 QDKMYIYGGNH--NGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-E-NKLLSIAGHTKDPSE 270 (559)
Q Consensus 195 ~~~lyv~GG~~--~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~-~~lyv~GG~~~~~~~ 270 (559)
++.||+..+.. .......+++||+.++++..+..... . .....-++++.. + +.||+....
T Consensus 28 ~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~---------~-~~~~~~~~i~~~~~~g~l~v~~~~------ 91 (314)
T 1pjx_A 28 NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEV---------N-GYGGIPAGCQCDRDANQLFVADMR------ 91 (314)
T ss_dssp TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEE---------T-TEECCEEEEEECSSSSEEEEEETT------
T ss_pred CCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEeccc---------C-CCCCCCceEEEecCCCcEEEEECC------
Confidence 56788871100 01122469999999998876542100 0 000111223322 4 788887642
Q ss_pred cceEEEEECCCCeEEEe-ccCCCCCCCccceEEEEE-CCEEEEEcCcCC---------CCCCcCceEEEECCCCceEEec
Q 008611 271 IIQVKVFDLQTCSWSTL-KTYGKPPVSRGGQSVTLV-GTSLVIFGGEDA---------KRSLLNDLHILDLETMTWDEID 339 (559)
Q Consensus 271 ~~~v~~yd~~t~~W~~~-~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~---------~~~~~~~~~~yd~~t~~W~~~~ 339 (559)
+.+.+||+. ++...+ ...........-..++.. ++.+|+....+. .......+++||+. .+...+.
T Consensus 92 -~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~ 168 (314)
T 1pjx_A 92 -LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD 168 (314)
T ss_dssp -TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE
T ss_pred -CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec
Confidence 268999998 777665 321111111112233332 567887654321 11113568999987 6655442
Q ss_pred CCCCCCCcccccEEEEE----cCC-EEEEEcCCCCCCCcCceEEEECC-CCe
Q 008611 340 AVGVPPSPRSDHAAAVH----AER-YLLIFGGGSHAACFNDLHVLDLQ-TME 385 (559)
Q Consensus 340 ~~~~~p~~r~~~~~~~~----~~~-~l~v~GG~~~~~~~~dv~~~d~~-~~~ 385 (559)
.. ......+++. .++ .||+.... .+.+++||+. +..
T Consensus 169 ~~-----~~~~~~i~~~~~~d~dg~~l~v~~~~-----~~~i~~~~~~~~g~ 210 (314)
T 1pjx_A 169 TA-----FQFPNGIAVRHMNDGRPYQLIVAETP-----TKKLWSYDIKGPAK 210 (314)
T ss_dssp EE-----ESSEEEEEEEECTTSCEEEEEEEETT-----TTEEEEEEEEETTE
T ss_pred cC-----CCCcceEEEecccCCCCCEEEEEECC-----CCeEEEEECCCCCc
Confidence 11 0111334444 444 56776432 2468899875 444
No 79
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=93.87 E-value=0.17 Score=50.33 Aligned_cols=152 Identities=10% Similarity=0.157 Sum_probs=73.6
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe--CCEEEEEeccCCCCCCcc
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHTKDPSEII 272 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~ 272 (559)
++.+++.|+.+ ..+.+||+.++.|..+.... .....-.++.+ ++.+++.|+.+.
T Consensus 22 ~g~~l~~~~~d-----~~i~iw~~~~~~~~~~~~~~-------------~h~~~v~~~~~s~~~~~l~s~s~d~------ 77 (377)
T 3dwl_C 22 QRTEFVTTTAT-----NQVELYEQDGNGWKHARTFS-------------DHDKIVTCVDWAPKSNRIVTCSQDR------ 77 (377)
T ss_dssp SSSEEECCCSS-----SCBCEEEEETTEEEECCCBC-------------CCSSCEEEEEECTTTCCEEEEETTS------
T ss_pred CCCEEEEecCC-----CEEEEEEccCCceEEEEEEe-------------cCCceEEEEEEeCCCCEEEEEeCCC------
Confidence 45666777643 35778888888887765442 11111222333 567777777643
Q ss_pred eEEEEECCCCe-EEEeccCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCcCceEEEECCCCc-eEEecCCCCCCCcc
Q 008611 273 QVKVFDLQTCS-WSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMT-WDEIDAVGVPPSPR 348 (559)
Q Consensus 273 ~v~~yd~~t~~-W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~~~~~~~p~~r 348 (559)
.+.+||+.+.. |..+... ........++.+ ++.+++.|+.++ .+.+||+.+.. |..+.... .+...
T Consensus 78 ~v~vwd~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~------~i~iwd~~~~~~~~~~~~~~-~~h~~ 147 (377)
T 3dwl_C 78 NAYVYEKRPDGTWKQTLVL---LRLNRAATFVRWSPNEDKFAVGSGAR------VISVCYFEQENDWWVSKHLK-RPLRS 147 (377)
T ss_dssp SEEEC------CCCCEEEC---CCCSSCEEEEECCTTSSCCEEEESSS------CEEECCC-----CCCCEEEC-SSCCS
T ss_pred eEEEEEcCCCCceeeeeEe---cccCCceEEEEECCCCCEEEEEecCC------eEEEEEECCcccceeeeEee-cccCC
Confidence 48888888776 4433321 111111222222 456677776543 47778877654 32221110 11222
Q ss_pred cccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCe
Q 008611 349 SDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTME 385 (559)
Q Consensus 349 ~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~ 385 (559)
.-.+++...++.+++.|+.+ ..+.+||+.+..
T Consensus 148 ~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~ 179 (377)
T 3dwl_C 148 TILSLDWHPNNVLLAAGCAD-----RKAYVLSAYVRD 179 (377)
T ss_dssp CEEEEEECTTSSEEEEEESS-----SCEEEEEECCSS
T ss_pred CeEEEEEcCCCCEEEEEeCC-----CEEEEEEEEecc
Confidence 23344454556677777754 347888876443
No 80
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=93.86 E-value=2.6 Score=41.01 Aligned_cols=148 Identities=13% Similarity=0.082 Sum_probs=75.5
Q ss_pred cEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCC
Q 008611 212 DMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYG 291 (559)
Q Consensus 212 ~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g 291 (559)
.+|.+|..++++..+.... ........+..-+++||+.+... ....+++||+.+.+++.+...
T Consensus 19 ~v~~~d~~tg~~~~~~~~~------------~~~~p~~~a~spdg~l~~~~~~~----~~~~v~~~~~~~g~~~~~~~~- 81 (347)
T 3hfq_A 19 YQGTLDTTAKTLTNDGLLA------------ATQNPTYLALSAKDCLYSVDKED----DEGGIAAWQIDGQTAHKLNTV- 81 (347)
T ss_dssp EEEEEETTTTEEEEEEEEE------------ECSCCCCEEECTTCEEEEEEEET----TEEEEEEEEEETTEEEEEEEE-
T ss_pred EEEEEcCCCCeEEEeeeee------------ccCCcceEEEccCCeEEEEEecC----CCceEEEEEecCCcEEEeeee-
Confidence 4778888888888764432 01111111222267777765431 235799999988887766431
Q ss_pred CCCCCccceEEEEE-CC-EEEEEcCcCCCCCCcCceEEEECC-CCceEEec---CCCCCCCcc----cccEEEEEcCCEE
Q 008611 292 KPPVSRGGQSVTLV-GT-SLVIFGGEDAKRSLLNDLHILDLE-TMTWDEID---AVGVPPSPR----SDHAAAVHAERYL 361 (559)
Q Consensus 292 ~~p~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~yd~~-t~~W~~~~---~~~~~p~~r----~~~~~~~~~~~~l 361 (559)
......-..++.. ++ .||+.+.. .+.+.+|++. +.....+. ..+..|.+| .-+++++..++.+
T Consensus 82 -~~~~~~p~~~a~spdg~~l~~~~~~------~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l 154 (347)
T 3hfq_A 82 -VAPGTPPAYVAVDEARQLVYSANYH------KGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRL 154 (347)
T ss_dssp -EEESCCCSEEEEETTTTEEEEEETT------TTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCE
T ss_pred -ecCCCCCEEEEECCCCCEEEEEeCC------CCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcE
Confidence 0001111223333 34 56665532 2357778774 33443332 222222222 2344555556667
Q ss_pred EEEcCCCCCCCcCceEEEECC-CCeeEe
Q 008611 362 LIFGGGSHAACFNDLHVLDLQ-TMEWSR 388 (559)
Q Consensus 362 ~v~GG~~~~~~~~dv~~~d~~-~~~W~~ 388 (559)
|+.+... +.+++||+. +.....
T Consensus 155 ~v~~~~~-----~~v~~~~~~~~g~~~~ 177 (347)
T 3hfq_A 155 AVIDLGS-----DKVYVYNVSDAGQLSE 177 (347)
T ss_dssp EEEETTT-----TEEEEEEECTTSCEEE
T ss_pred EEEeCCC-----CEEEEEEECCCCcEEE
Confidence 7665432 468889887 555443
No 81
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=93.83 E-value=5 Score=38.74 Aligned_cols=107 Identities=15% Similarity=0.198 Sum_probs=59.7
Q ss_pred CCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEEEECCCC
Q 008611 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETM 333 (559)
Q Consensus 255 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~ 333 (559)
++.+++.|+.+. .+.+||+.+.+-...-. + ...+ -.+++.. ++.+++.|+.++ .+.+||+.+.
T Consensus 175 dg~~lasg~~dg------~i~iwd~~~~~~~~~~~-~-h~~~--v~~l~~spd~~~l~s~s~dg------~i~iwd~~~~ 238 (321)
T 3ow8_A 175 DGKYLASGAIDG------IINIFDIATGKLLHTLE-G-HAMP--IRSLTFSPDSQLLVTASDDG------YIKIYDVQHA 238 (321)
T ss_dssp TSSEEEEEETTS------CEEEEETTTTEEEEEEC-C-CSSC--CCEEEECTTSCEEEEECTTS------CEEEEETTTC
T ss_pred CCCEEEEEcCCC------eEEEEECCCCcEEEEEc-c-cCCc--eeEEEEcCCCCEEEEEcCCC------eEEEEECCCc
Confidence 677778887654 48899998876433211 1 1111 1122222 557777787643 4888998876
Q ss_pred ceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCee
Q 008611 334 TWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEW 386 (559)
Q Consensus 334 ~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W 386 (559)
.....-. .....-.+++...++..++.|+.+ ..+.+||+.+.+-
T Consensus 239 ~~~~~~~----~h~~~v~~~~~sp~~~~l~s~s~D-----~~v~iwd~~~~~~ 282 (321)
T 3ow8_A 239 NLAGTLS----GHASWVLNVAFCPDDTHFVSSSSD-----KSVKVWDVGTRTC 282 (321)
T ss_dssp CEEEEEC----CCSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTEE
T ss_pred ceeEEEc----CCCCceEEEEECCCCCEEEEEeCC-----CcEEEEeCCCCEE
Confidence 5543211 111112234444455577777654 3588899887654
No 82
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=93.82 E-value=3.4 Score=40.61 Aligned_cols=107 Identities=12% Similarity=0.112 Sum_probs=56.2
Q ss_pred CCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEE---CCEEEEEcCcCCCCCCcCceEEEECC
Q 008611 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV---GTSLVIFGGEDAKRSLLNDLHILDLE 331 (559)
Q Consensus 255 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~yd~~ 331 (559)
++.+++.|+.+. .+.++|+.+++-...-. ... ....+..+ +..+++.|+.++ .+.+||+.
T Consensus 138 dg~~l~sgs~d~------~i~iwd~~~~~~~~~~~---~h~--~~V~~~~~~~~~~~~l~s~s~D~------~v~iwd~~ 200 (344)
T 4gqb_B 138 SGTQAVSGSKDI------CIKVWDLAQQVVLSSYR---AHA--AQVTCVAASPHKDSVFLSCSEDN------RILLWDTR 200 (344)
T ss_dssp TSSEEEEEETTS------CEEEEETTTTEEEEEEC---CCS--SCEEEEEECSSCTTEEEEEETTS------CEEEEETT
T ss_pred CCCEEEEEeCCC------eEEEEECCCCcEEEEEc---CcC--CceEEEEecCCCCCceeeecccc------cccccccc
Confidence 677888887654 48889998876433211 111 11112222 235777777643 47889998
Q ss_pred CCceEEecCCCCCCCcccccEEEEEc-CCEEEEEcCCCCCCCcCceEEEECCCCe
Q 008611 332 TMTWDEIDAVGVPPSPRSDHAAAVHA-ERYLLIFGGGSHAACFNDLHVLDLQTME 385 (559)
Q Consensus 332 t~~W~~~~~~~~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~dv~~~d~~~~~ 385 (559)
+.+-...-.. ........+++... ++.+++.|+.+ ..|.+||+.+.+
T Consensus 201 ~~~~~~~~~~--~~~~~~~~~~~~~p~~~~~l~sg~~d-----g~v~~wd~~~~~ 248 (344)
T 4gqb_B 201 CPKPASQIGC--SAPGYLPTSLAWHPQQSEVFVFGDEN-----GTVSLVDTKSTS 248 (344)
T ss_dssp SSSCEEECC------CCCEEEEEECSSCTTEEEEEETT-----SEEEEEESCC--
T ss_pred ccceeeeeec--ceeeccceeeeecCCCCcceEEeccC-----CcEEEEECCCCc
Confidence 7664332111 00111112233332 44577887753 357888987653
No 83
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=93.77 E-value=4.6 Score=38.58 Aligned_cols=150 Identities=11% Similarity=0.069 Sum_probs=69.5
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcC--CCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCE-EEEEeccCCCCCCc
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLR--SWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENK-LLSIAGHTKDPSEI 271 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~--t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~-lyv~GG~~~~~~~~ 271 (559)
++.||+.+. .. ..+.+|++. ++++..+.... . .....+.+..-++. ||+.+.. .
T Consensus 49 g~~l~~~~~-~~----~~v~~~~~~~~~~~~~~~~~~~-----------~-~~~~~~~~~s~dg~~l~~~~~~------~ 105 (343)
T 1ri6_A 49 KRYLYVGVR-PE----FRVLAYRIAPDDGALTFAAESA-----------L-PGSLTHISTDHQGQFVFVGSYN------A 105 (343)
T ss_dssp SSEEEEEET-TT----TEEEEEEECTTTCCEEEEEEEE-----------C-SSCCSEEEECTTSSEEEEEETT------T
T ss_pred CCEEEEeec-CC----CeEEEEEecCCCCceeeccccc-----------c-CCCCcEEEEcCCCCEEEEEecC------C
Confidence 345666544 21 467777776 77887765432 0 11111111222444 5555432 2
Q ss_pred ceEEEEECCCCe-EEEeccCCCCCCCccceEEEEE-C-CEEEEEcCcCCCCCCcCceEEEECCC-CceEEec--CCCCCC
Q 008611 272 IQVKVFDLQTCS-WSTLKTYGKPPVSRGGQSVTLV-G-TSLVIFGGEDAKRSLLNDLHILDLET-MTWDEID--AVGVPP 345 (559)
Q Consensus 272 ~~v~~yd~~t~~-W~~~~~~g~~p~~r~~~~~~~~-~-~~lyv~GG~~~~~~~~~~~~~yd~~t-~~W~~~~--~~~~~p 345 (559)
..+.+||+.... ...+... +....-+.++.. + +.||+.+.. -+.+.+||+.+ .+...+. ... .+
T Consensus 106 ~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~s~dg~~l~~~~~~------~~~v~~~d~~~~~~~~~~~~~~~~-~~ 175 (343)
T 1ri6_A 106 GNVSVTRLEDGLPVGVVDVV---EGLDGCHSANISPDNRTLWVPALK------QDRICLFTVSDDGHLVAQDPAEVT-TV 175 (343)
T ss_dssp TEEEEEEEETTEEEEEEEEE---CCCTTBCCCEECTTSSEEEEEEGG------GTEEEEEEECTTSCEEEEEEEEEE-CS
T ss_pred CeEEEEECCCCccccccccc---cCCCCceEEEECCCCCEEEEecCC------CCEEEEEEecCCCceeeecccccc-cC
Confidence 357788774222 2222211 111112223332 3 367765532 24588999887 6665332 110 11
Q ss_pred CcccccEEEEEcCC-EEEEEcCCCCCCCcCceEEEECC
Q 008611 346 SPRSDHAAAVHAER-YLLIFGGGSHAACFNDLHVLDLQ 382 (559)
Q Consensus 346 ~~r~~~~~~~~~~~-~l~v~GG~~~~~~~~dv~~~d~~ 382 (559)
....-..+++..++ .+|+.+... +.+.+||+.
T Consensus 176 ~~~~~~~~~~~pdg~~l~~~~~~~-----~~i~~~~~~ 208 (343)
T 1ri6_A 176 EGAGPRHMVFHPNEQYAYCVNELN-----SSVDVWELK 208 (343)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTT-----TEEEEEESS
T ss_pred CCCCcceEEECCCCCEEEEEeCCC-----CEEEEEEec
Confidence 11111234444444 576665432 458888884
No 84
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=93.75 E-value=5.3 Score=40.50 Aligned_cols=148 Identities=10% Similarity=0.112 Sum_probs=79.1
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCCCCCcceE
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQV 274 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v 274 (559)
++.+++.|+.+ ..+.+||+.+.+-...-.. ........+..-++..++.|+.++ .+
T Consensus 279 ~~~~l~~~~~d-----~~i~vwd~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~l~sg~~dg------~i 334 (464)
T 3v7d_B 279 HGNIVVSGSYD-----NTLIVWDVAQMKCLYILSG-------------HTDRIYSTIYDHERKRCISASMDT------TI 334 (464)
T ss_dssp ETTEEEEEETT-----SCEEEEETTTTEEEEEECC-------------CSSCEEEEEEETTTTEEEEEETTS------CE
T ss_pred CCCEEEEEeCC-----CeEEEEECCCCcEEEEecC-------------CCCCEEEEEEcCCCCEEEEEeCCC------cE
Confidence 34556666633 3588999987654332110 111111111222566777777643 48
Q ss_pred EEEECCCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccccEEE
Q 008611 275 KVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAA 354 (559)
Q Consensus 275 ~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~ 354 (559)
.+||+.+.+-...- ........+..+.+..++.|+.+ +.+.+||+.+..-..... .......++
T Consensus 335 ~vwd~~~~~~~~~~-----~~h~~~v~~~~~~~~~l~s~s~d------g~v~vwd~~~~~~~~~~~-----~~~~~~~~~ 398 (464)
T 3v7d_B 335 RIWDLENGELMYTL-----QGHTALVGLLRLSDKFLVSAAAD------GSIRGWDANDYSRKFSYH-----HTNLSAITT 398 (464)
T ss_dssp EEEETTTTEEEEEE-----CCCSSCEEEEEECSSEEEEEETT------SEEEEEETTTCCEEEEEE-----CTTCCCEEE
T ss_pred EEEECCCCcEEEEE-----eCCCCcEEEEEEcCCEEEEEeCC------CcEEEEECCCCceeeeec-----CCCCccEEE
Confidence 89999887643321 11112223344556677777754 348889988765332211 111122333
Q ss_pred EEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEe
Q 008611 355 VHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSR 388 (559)
Q Consensus 355 ~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~ 388 (559)
...++.+++.|+ + +.+.+||+.+.+-..
T Consensus 399 ~~~~~~~l~~~~-d-----g~i~iwd~~~g~~~~ 426 (464)
T 3v7d_B 399 FYVSDNILVSGS-E-----NQFNIYNLRSGKLVH 426 (464)
T ss_dssp EEECSSEEEEEE-T-----TEEEEEETTTCCEEE
T ss_pred EEeCCCEEEEec-C-----CeEEEEECCCCcEEe
Confidence 334555666665 2 358999998876544
No 85
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=93.70 E-value=1.7 Score=41.82 Aligned_cols=152 Identities=3% Similarity=-0.007 Sum_probs=74.9
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeE-EEeeeccccCCCCCCCCCCCCCCccceeEEe-CC-EEEEEeccCCCCCCc
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAW-SKIQAKAVAESTESPSPALLTPCAGHSLIPW-EN-KLLSIAGHTKDPSEI 271 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W-~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~ 271 (559)
++.||+.+... +.+++||+.+++. ....... ..+ .++++.. ++ .|| .+... ...
T Consensus 51 g~~l~~~~~~~-----~~i~~~d~~~~~~~~~~~~~~------------~~~--~~~~~~s~dg~~l~-~~~~~---~~~ 107 (331)
T 3u4y_A 51 CSNVVVTSDFC-----QTLVQIETQLEPPKVVAIQEG------------QSS--MADVDITPDDQFAV-TVTGL---NHP 107 (331)
T ss_dssp SCEEEEEESTT-----CEEEEEECSSSSCEEEEEEEC------------SSC--CCCEEECTTSSEEE-ECCCS---SSS
T ss_pred CCEEEEEeCCC-----CeEEEEECCCCceeEEecccC------------CCC--ccceEECCCCCEEE-EecCC---CCc
Confidence 34577776522 3799999998875 2221111 111 1212222 33 566 33221 112
Q ss_pred ceEEEEECCCCeEEEeccCCCCCCCccceEEEEE-CC-EEEEEcCcCCCCCCcCc-eEEEECCCCc-eEEecCCCCCCCc
Q 008611 272 IQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GT-SLVIFGGEDAKRSLLND-LHILDLETMT-WDEIDAVGVPPSP 347 (559)
Q Consensus 272 ~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~-~~~yd~~t~~-W~~~~~~~~~p~~ 347 (559)
..+++||+.+++.......+.. .+.++.. ++ .||+.+..+ +. +.+|++.... ..... ....+..
T Consensus 108 ~~i~v~d~~~~~~~~~~~~~~~-----~~~~~~spdg~~l~~~~~~~------~~~i~~~~~~~~g~~~~~~-~~~~~~~ 175 (331)
T 3u4y_A 108 FNMQSYSFLKNKFISTIPIPYD-----AVGIAISPNGNGLILIDRSS------ANTVRRFKIDADGVLFDTG-QEFISGG 175 (331)
T ss_dssp CEEEEEETTTTEEEEEEECCTT-----EEEEEECTTSSCEEEEEETT------TTEEEEEEECTTCCEEEEE-EEEECSS
T ss_pred ccEEEEECCCCCeEEEEECCCC-----ccceEECCCCCEEEEEecCC------CceEEEEEECCCCcEeecC-CccccCC
Confidence 3799999998876554322221 1344443 33 577765432 34 6677765422 11110 0000111
Q ss_pred ccccEEEEEcCC-EEEEEcCCCCCCCcCceEEEECCCCee
Q 008611 348 RSDHAAAVHAER-YLLIFGGGSHAACFNDLHVLDLQTMEW 386 (559)
Q Consensus 348 r~~~~~~~~~~~-~l~v~GG~~~~~~~~dv~~~d~~~~~W 386 (559)
..-..+++..++ ++|+.+.. .+.+.+||+.+.+.
T Consensus 176 ~~~~~~~~spdg~~l~v~~~~-----~~~v~v~d~~~~~~ 210 (331)
T 3u4y_A 176 TRPFNITFTPDGNFAFVANLI-----GNSIGILETQNPEN 210 (331)
T ss_dssp SSEEEEEECTTSSEEEEEETT-----TTEEEEEECSSTTS
T ss_pred CCccceEECCCCCEEEEEeCC-----CCeEEEEECCCCcc
Confidence 222344554454 57776543 24689999987654
No 86
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=93.68 E-value=5.3 Score=38.55 Aligned_cols=150 Identities=12% Similarity=0.065 Sum_probs=78.7
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCCCCCcceE
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQV 274 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v 274 (559)
++.+++.|+.+ ..+.++|+.+++-...-... .......+..-++..++.|+.+ ..+
T Consensus 91 ~~~~l~s~s~D-----~~i~lWd~~~~~~~~~~~~~-------------~~~~~~~~~spdg~~l~~g~~d------g~v 146 (321)
T 3ow8_A 91 TLPIAASSSLD-----AHIRLWDLENGKQIKSIDAG-------------PVDAWTLAFSPDSQYLATGTHV------GKV 146 (321)
T ss_dssp SSSEEEEEETT-----SEEEEEETTTTEEEEEEECC-------------TTCCCCEEECTTSSEEEEECTT------SEE
T ss_pred CCCEEEEEeCC-----CcEEEEECCCCCEEEEEeCC-------------CccEEEEEECCCCCEEEEEcCC------CcE
Confidence 34566666633 35888898887643322111 1111111122256777777654 357
Q ss_pred EEEECCCCeEEEeccCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccccEE
Q 008611 275 KVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAA 353 (559)
Q Consensus 275 ~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~ 353 (559)
..||+.+..-...-. . ....-.+++.. ++++++.|+.++ .+.+||+.+.+-...-.. ....-.++
T Consensus 147 ~i~~~~~~~~~~~~~---~-~~~~v~~~~~spdg~~lasg~~dg------~i~iwd~~~~~~~~~~~~----h~~~v~~l 212 (321)
T 3ow8_A 147 NIFGVESGKKEYSLD---T-RGKFILSIAYSPDGKYLASGAIDG------IINIFDIATGKLLHTLEG----HAMPIRSL 212 (321)
T ss_dssp EEEETTTCSEEEEEE---C-SSSCEEEEEECTTSSEEEEEETTS------CEEEEETTTTEEEEEECC----CSSCCCEE
T ss_pred EEEEcCCCceeEEec---C-CCceEEEEEECCCCCEEEEEcCCC------eEEEEECCCCcEEEEEcc----cCCceeEE
Confidence 888888765332211 0 11111222222 557777777543 488999987754322111 11112344
Q ss_pred EEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeE
Q 008611 354 AVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWS 387 (559)
Q Consensus 354 ~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~ 387 (559)
+...++.+++.|+.+ ..+.+||+.+....
T Consensus 213 ~~spd~~~l~s~s~d-----g~i~iwd~~~~~~~ 241 (321)
T 3ow8_A 213 TFSPDSQLLVTASDD-----GYIKIYDVQHANLA 241 (321)
T ss_dssp EECTTSCEEEEECTT-----SCEEEEETTTCCEE
T ss_pred EEcCCCCEEEEEcCC-----CeEEEEECCCccee
Confidence 555566677887754 34888998776543
No 87
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=93.54 E-value=4.9 Score=37.63 Aligned_cols=156 Identities=11% Similarity=-0.043 Sum_probs=83.7
Q ss_pred eeEEEE-CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe-CCEEEEEeccCC
Q 008611 189 HGAAVV-QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-ENKLLSIAGHTK 266 (559)
Q Consensus 189 ~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~ 266 (559)
++++.. ++.||+.... ...+++||+ +++........ ....-++++.. ++.+|+...
T Consensus 102 ~~i~~~~~g~l~v~~~~-----~~~i~~~d~-~g~~~~~~~~~-------------~~~~~~~i~~~~~g~l~v~~~--- 159 (299)
T 2z2n_A 102 YGITEGPNGDIWFTEMN-----GNRIGRITD-DGKIREYELPN-------------KGSYPSFITLGSDNALWFTEN--- 159 (299)
T ss_dssp EEEEECTTSCEEEEETT-----TTEEEEECT-TCCEEEEECSS-------------TTCCEEEEEECTTSCEEEEET---
T ss_pred eeeEECCCCCEEEEecC-----CceEEEECC-CCCEEEecCCC-------------CCCCCceEEEcCCCCEEEEeC---
Confidence 344443 4678887532 246889998 66665543210 11112233333 568887642
Q ss_pred CCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCC
Q 008611 267 DPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPP 345 (559)
Q Consensus 267 ~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p 345 (559)
....+++||+ +++...+...... ..-.+++.. ++.||+.... .+.+.+||+ +..+.......
T Consensus 160 ---~~~~i~~~~~-~g~~~~~~~~~~~---~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~-~g~~~~~~~~~--- 222 (299)
T 2z2n_A 160 ---QNNAIGRITE-SGDITEFKIPTPA---SGPVGITKGNDDALWFVEII------GNKIGRITT-SGEITEFKIPT--- 222 (299)
T ss_dssp ---TTTEEEEECT-TCCEEEEECSSTT---CCEEEEEECTTSSEEEEETT------TTEEEEECT-TCCEEEEECSS---
T ss_pred ---CCCEEEEEcC-CCcEEEeeCCCCC---CcceeEEECCCCCEEEEccC------CceEEEECC-CCcEEEEECCC---
Confidence 1246899999 7777765321111 111233333 4578876532 346899999 77776653211
Q ss_pred CcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEec
Q 008611 346 SPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRP 389 (559)
Q Consensus 346 ~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~ 389 (559)
....-+++++..++.||+.... .+.+.+||+ +.....+
T Consensus 223 ~~~~~~~i~~~~~g~l~v~~~~-----~~~i~~~d~-~g~~~~~ 260 (299)
T 2z2n_A 223 PNARPHAITAGAGIDLWFTEWG-----ANKIGRLTS-NNIIEEY 260 (299)
T ss_dssp TTCCEEEEEECSTTCEEEEETT-----TTEEEEEET-TTEEEEE
T ss_pred CCCCceeEEECCCCCEEEeccC-----CceEEEECC-CCceEEE
Confidence 1112234444445668876422 245899998 4555444
No 88
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*
Probab=93.54 E-value=3.9 Score=40.70 Aligned_cols=179 Identities=16% Similarity=0.260 Sum_probs=98.8
Q ss_pred eEEecccCCCCCCcccceeEEEECCEEEEEccCCCCcccCcEEEE-Ec------CCCeEEEeeeccccCCCCCCCCCCCC
Q 008611 172 QWIAPPISGQRPKARYEHGAAVVQDKMYIYGGNHNGRYLSDMHIL-DL------RSWAWSKIQAKAVAESTESPSPALLT 244 (559)
Q Consensus 172 ~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~y-d~------~t~~W~~~~~~~~~~~~~~~~~~~p~ 244 (559)
.|++-. .|..|....-|+.|.+++.=|.+|=.++......+-.+ -+ ....=+.++.. .-.
T Consensus 271 pW~~t~-L~~i~~vTe~HSFa~i~~~~fa~GyHnGDv~PRe~G~~yfs~~~~sp~~~vrr~i~se------------y~~ 337 (670)
T 3ju4_A 271 PWRKTD-LGLIPSVTEVHSFATIDNNGFAMGYHQGDVAPREVGLFYFPDAFNSPSNYVRRQIPSE------------YEP 337 (670)
T ss_dssp CCEEEE-CCSCTTCSEEEEEEECSSSCEEEEEEECSSSSCEEEEEEETTTTTCTTCCEEEECCGG------------GCT
T ss_pred Cceecc-cccccceeeeeeeeEecCCceEEEeccCCCCcceeeEEEecccccCCcceeeeechhh------------hcc
Confidence 666543 34577777889999999988888743333222222221 11 11122222211 011
Q ss_pred CCccceeEEeCCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccc--eEEEEECCEEEEEcCcCC-----
Q 008611 245 PCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGG--QSVTLVGTSLVIFGGEDA----- 317 (559)
Q Consensus 245 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~--~~~~~~~~~lyv~GG~~~----- 317 (559)
.-+-.+.-.++|.||++--.......-+.+.+-+.....|+.+. .|....+ .-.+.+++.|||||-...
T Consensus 338 ~AsEPCvkyYdgvLyLtTRgt~~~~~GS~L~rs~d~Gq~w~slr----fp~nvHhtnlPFakvgD~l~mFgsERA~nEWE 413 (670)
T 3ju4_A 338 DASEPCIKYYDGVLYLITRGTRGDRLGSSLHRSRDIGQTWESLR----FPHNVHHTTLPFAKVGDDLIMFGSERAENEWE 413 (670)
T ss_dssp TEEEEEEEEETTEEEEEEEESCTTSCCCEEEEESSTTSSCEEEE----CTTCCCSSCCCEEEETTEEEEEEECSSTTCSS
T ss_pred ccccchhhhhCCEEEEEecCcCCCCCcceeeeecccCCchhhee----ccccccccCCCcceeCCEEEEEeccccccccc
Confidence 22223344569999998654444355667888888888999996 3433222 225678999999986311
Q ss_pred ----CCCCc----Cc-eEEEE-----CCCCceEEecC---CCCCCCcccccEEEEEcCCEE-EEEcCC
Q 008611 318 ----KRSLL----ND-LHILD-----LETMTWDEIDA---VGVPPSPRSDHAAAVHAERYL-LIFGGG 367 (559)
Q Consensus 318 ----~~~~~----~~-~~~yd-----~~t~~W~~~~~---~~~~p~~r~~~~~~~~~~~~l-~v~GG~ 367 (559)
+.++- .. +.+.+ .+.-+|..+.. .|..-..-.+...+++.++.| |||||.
T Consensus 414 ~G~pD~RY~a~yPRtF~~r~nv~~W~~d~~ew~nItdqIYqG~ivNsavGVGSv~vKD~~lyyiFGgE 481 (670)
T 3ju4_A 414 AGAPDDRYKASYPRTFYARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNYIYYMFGGE 481 (670)
T ss_dssp TTCCCCCSSCBCCEEEEEEEETTTCCCTTCCCEEEEECBBCCSSSCCCSEEEEEEEETTEEEEEEEEB
T ss_pred cCCCcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEeCCEEEEEecCc
Confidence 11111 11 12222 33456777652 233334445566677778865 689993
No 89
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=93.45 E-value=6 Score=38.40 Aligned_cols=148 Identities=15% Similarity=0.143 Sum_probs=76.0
Q ss_pred CCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEEEECCCC
Q 008611 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETM 333 (559)
Q Consensus 255 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~ 333 (559)
++. ++.|+.+ ..+..+|+.+.+-...-. + ... .-.+++.. ++.+++.|+.++ .+.+||+.+.
T Consensus 154 ~~~-l~s~s~d------~~i~~wd~~~~~~~~~~~-~--h~~-~v~~~~~~~~~~~l~sg~~d~------~v~~wd~~~~ 216 (340)
T 1got_B 154 DNQ-IVTSSGD------TTCALWDIETGQQTTTFT-G--HTG-DVMSLSLAPDTRLFVSGACDA------SAKLWDVREG 216 (340)
T ss_dssp TTE-EEEEETT------SCEEEEETTTTEEEEEEC-C--CSS-CEEEEEECTTSSEEEEEETTS------CEEEEETTTC
T ss_pred CCc-EEEEECC------CcEEEEECCCCcEEEEEc-C--CCC-ceEEEEECCCCCEEEEEeCCC------cEEEEECCCC
Confidence 455 4555543 348889998876543321 1 111 11122222 457788887643 4788898776
Q ss_pred ceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEeccCCCCCCCCccccEEEEECCceec
Q 008611 334 TWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFL 413 (559)
Q Consensus 334 ~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~~~~~~~p~~R~~hs~~~~~~~~~i 413 (559)
.-...-. .....-.++++..++.+++.|+.+ ..+.+||+.+..-..... .+.......++.+..
T Consensus 217 ~~~~~~~----~h~~~v~~v~~~p~~~~l~s~s~d-----~~v~iwd~~~~~~~~~~~---~~~~~~~v~~~~~s~---- 280 (340)
T 1got_B 217 MCRQTFT----GHESDINAICFFPNGNAFATGSDD-----ATCRLFDLRADQELMTYS---HDNIICGITSVSFSK---- 280 (340)
T ss_dssp SEEEEEC----CCSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTEEEEEEC---CTTCCSCEEEEEECT----
T ss_pred eeEEEEc----CCcCCEEEEEEcCCCCEEEEEcCC-----CcEEEEECCCCcEEEEEc---cCCcccceEEEEECC----
Confidence 5433211 111122344444556677777754 357889988765322211 011111222333321
Q ss_pred ceeeeeeccCCCcEEEEEcCcCCCCcccEEEEeCCCc
Q 008611 414 GLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSHK 450 (559)
Q Consensus 414 G~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~~d~~~~ 450 (559)
.+.+++.|+.++ .|.+||..+.
T Consensus 281 -----------~g~~l~~g~~d~----~i~vwd~~~~ 302 (340)
T 1got_B 281 -----------SGRLLLAGYDDF----NCNVWDALKA 302 (340)
T ss_dssp -----------TSSEEEEEETTS----EEEEEETTTC
T ss_pred -----------CCCEEEEECCCC----eEEEEEcccC
Confidence 236777777554 5788887654
No 90
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=93.39 E-value=5.4 Score=37.71 Aligned_cols=159 Identities=13% Similarity=-0.004 Sum_probs=83.1
Q ss_pred eeEEEE--CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEE-eCCEEEEEeccC
Q 008611 189 HGAAVV--QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIP-WENKLLSIAGHT 265 (559)
Q Consensus 189 ~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~ 265 (559)
.+.+.. ++.||+.+.. ...+++||+.+. ...+... .. .-++++. -++.||+....
T Consensus 31 eg~~~d~~g~~l~~~~~~-----~~~i~~~~~~~~-~~~~~~~--------------~~-~~~~l~~~~dg~l~v~~~~- 88 (296)
T 3e5z_A 31 EGPVYVPARSAVIFSDVR-----QNRTWAWSDDGQ-LSPEMHP--------------SH-HQNGHCLNKQGHLIACSHG- 88 (296)
T ss_dssp EEEEEEGGGTEEEEEEGG-----GTEEEEEETTSC-EEEEESS--------------CS-SEEEEEECTTCCEEEEETT-
T ss_pred cCCeEeCCCCEEEEEeCC-----CCEEEEEECCCC-eEEEECC--------------CC-CcceeeECCCCcEEEEecC-
Confidence 344444 3458888752 246899999988 5555321 11 1122332 26778776432
Q ss_pred CCCCCcceEEEEECCCCeEEEeccCC-CCCCCccceEEEE-ECCEEEEE----cCcCC-------CCCCcCceEEEECCC
Q 008611 266 KDPSEIIQVKVFDLQTCSWSTLKTYG-KPPVSRGGQSVTL-VGTSLVIF----GGEDA-------KRSLLNDLHILDLET 332 (559)
Q Consensus 266 ~~~~~~~~v~~yd~~t~~W~~~~~~g-~~p~~r~~~~~~~-~~~~lyv~----GG~~~-------~~~~~~~~~~yd~~t 332 (559)
...+.+||+.+++...+.... ..+..+. ..++. -++.+|+. |.... .......|++|++.
T Consensus 89 -----~~~i~~~d~~~g~~~~~~~~~~~~~~~~~-~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~- 161 (296)
T 3e5z_A 89 -----LRRLERQREPGGEWESIADSFEGKKLNSP-NDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD- 161 (296)
T ss_dssp -----TTEEEEECSTTCCEEEEECEETTEECCCC-CCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-
T ss_pred -----CCeEEEEcCCCCcEEEEeeccCCCCCCCC-CCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-
Confidence 246999999888877664210 0111111 12222 25688886 43210 00113479999987
Q ss_pred CceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECC-CCee
Q 008611 333 MTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQ-TMEW 386 (559)
Q Consensus 333 ~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~-~~~W 386 (559)
.+...+... . ..-.++++..++.+++.+.. .+.+++||+. +.+.
T Consensus 162 g~~~~~~~~--~---~~~~gi~~s~dg~~lv~~~~-----~~~i~~~~~~~~g~~ 206 (296)
T 3e5z_A 162 GTLSAPIRD--R---VKPNGLAFLPSGNLLVSDTG-----DNATHRYCLNARGET 206 (296)
T ss_dssp SCEEEEECC--C---SSEEEEEECTTSCEEEEETT-----TTEEEEEEECSSSCE
T ss_pred CCEEEeecC--C---CCCccEEECCCCCEEEEeCC-----CCeEEEEEECCCCcC
Confidence 566555321 1 11134445445555554432 2468999986 4444
No 91
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=93.26 E-value=11 Score=40.76 Aligned_cols=115 Identities=12% Similarity=0.036 Sum_probs=60.1
Q ss_pred CcceEEEEECCCCeEEEeccCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEEEECCCC-ceEEecCCCCCCCc
Q 008611 270 EIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETM-TWDEIDAVGVPPSP 347 (559)
Q Consensus 270 ~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~-~W~~~~~~~~~p~~ 347 (559)
....++++|+.+.+-..+... ......-..++.. +++.++++..+... ....++.+|+.+. .+..+.........
T Consensus 233 ~~~~l~~~d~~~~~~~~~~~~--~~~~~~~~~~~~spdg~~l~~~~~~~~~-~~~~v~~~d~~~g~~~~~~~~~~~~~~~ 309 (706)
T 2z3z_A 233 HHVTVGIYHLATGKTVYLQTG--EPKEKFLTNLSWSPDENILYVAEVNRAQ-NECKVNAYDAETGRFVRTLFVETDKHYV 309 (706)
T ss_dssp CEEEEEEEETTTTEEEECCCC--SCTTCEEEEEEECTTSSEEEEEEECTTS-CEEEEEEEETTTCCEEEEEEEEECSSCC
T ss_pred CeeEEEEEECCCCceEeeccC--CCCceeEeeEEEECCCCEEEEEEeCCCC-CeeEEEEEECCCCceeeEEEEccCCCeE
Confidence 346799999999886665421 1111111122222 45544444433222 2457999999988 66655321100000
Q ss_pred ccccEEEEEc--CCEEEEEcCCCCCCCcCceEEEECCCCeeEecc
Q 008611 348 RSDHAAAVHA--ERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (559)
Q Consensus 348 r~~~~~~~~~--~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~~ 390 (559)
-....++... ++.+++.+..++ ...+|.+|........+.
T Consensus 310 ~~~~~~~~sp~~dg~~l~~~~~~g---~~~l~~~~~~~~~~~~l~ 351 (706)
T 2z3z_A 310 EPLHPLTFLPGSNNQFIWQSRRDG---WNHLYLYDTTGRLIRQVT 351 (706)
T ss_dssp CCCSCCEECTTCSSEEEEEECTTS---SCEEEEEETTSCEEEECC
T ss_pred CccCCceeecCCCCEEEEEEccCC---ccEEEEEECCCCEEEecC
Confidence 0012334444 666555554332 456899997777777663
No 92
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=93.26 E-value=5.1 Score=37.02 Aligned_cols=149 Identities=9% Similarity=-0.027 Sum_probs=76.9
Q ss_pred CCEEEE-EccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe-CCEEEEEeccCCCCCCcc
Q 008611 195 QDKMYI-YGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-ENKLLSIAGHTKDPSEII 272 (559)
Q Consensus 195 ~~~lyv-~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~ 272 (559)
++.||+ .... .+.+.+||+.+......... ....-++++.. ++.||+... ..
T Consensus 34 ~g~l~v~~~~~-----~~~i~~~~~~~~~~~~~~~~--------------~~~~p~~i~~~~~g~l~v~~~-------~~ 87 (270)
T 1rwi_B 34 AGNVYVTSEGM-----YGRVVKLATGSTGTTVLPFN--------------GLYQPQGLAVDGAGTVYVTDF-------NN 87 (270)
T ss_dssp TCCEEEEECSS-----SCEEEEECC-----EECCCC--------------SCCSCCCEEECTTCCEEEEET-------TT
T ss_pred CCCEEEEccCC-----CCcEEEecCCCcccceEeeC--------------CcCCcceeEECCCCCEEEEcC-------CC
Confidence 467888 5331 24688888877654433211 00111233333 567888754 13
Q ss_pred eEEEEECCCCeEEEeccCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCccccc
Q 008611 273 QVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDH 351 (559)
Q Consensus 273 ~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~ 351 (559)
.+.+||+.+.....+... ....-..++.. ++.||+.... .+.+++|+..+......... ....-.
T Consensus 88 ~i~~~d~~~~~~~~~~~~----~~~~p~~i~~~~~g~l~v~~~~------~~~i~~~~~~~~~~~~~~~~----~~~~p~ 153 (270)
T 1rwi_B 88 RVVTLAAGSNNQTVLPFD----GLNYPEGLAVDTQGAVYVADRG------NNRVVKLAAGSKTQTVLPFT----GLNDPD 153 (270)
T ss_dssp EEEEECTTCSCCEECCCC----SCSSEEEEEECTTCCEEEEEGG------GTEEEEECTTCCSCEECCCC----SCCSCC
T ss_pred EEEEEeCCCceEeeeecC----CcCCCcceEECCCCCEEEEECC------CCEEEEEECCCceeEeeccc----cCCCce
Confidence 689999988765544321 11112333333 5678887542 24588888766655433211 111223
Q ss_pred EEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEe
Q 008611 352 AAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSR 388 (559)
Q Consensus 352 ~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~ 388 (559)
++++..++.||+.... .+.|.+||+.+..-..
T Consensus 154 ~i~~~~~g~l~v~~~~-----~~~i~~~~~~~~~~~~ 185 (270)
T 1rwi_B 154 GVAVDNSGNVYVTDTD-----NNRVVKLEAESNNQVV 185 (270)
T ss_dssp CEEECTTCCEEEEEGG-----GTEEEEECTTTCCEEE
T ss_pred eEEEeCCCCEEEEECC-----CCEEEEEecCCCceEe
Confidence 4555545668887542 2468999988765433
No 93
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=93.16 E-value=4.1 Score=40.63 Aligned_cols=148 Identities=16% Similarity=0.126 Sum_probs=75.5
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe--CCEEEEEeccCCCCCCcc
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHTKDPSEII 272 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~ 272 (559)
++.+++.|+.+ ..+.+||+.+.+-...-. + ... .-.++.+ ++..++.|+.+ .
T Consensus 134 dg~~l~s~~~d-----~~i~iwd~~~~~~~~~~~-~------------h~~--~v~~~~~~p~~~~l~s~s~d------~ 187 (393)
T 1erj_A 134 DGKFLATGAED-----RLIRIWDIENRKIVMILQ-G------------HEQ--DIYSLDYFPSGDKLVSGSGD------R 187 (393)
T ss_dssp TSSEEEEEETT-----SCEEEEETTTTEEEEEEC-C------------CSS--CEEEEEECTTSSEEEEEETT------S
T ss_pred CCCEEEEEcCC-----CeEEEEECCCCcEEEEEc-c------------CCC--CEEEEEEcCCCCEEEEecCC------C
Confidence 46677777743 368889998876433211 0 011 1112222 55666677654 3
Q ss_pred eEEEEECCCCeEEEeccCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCC-C--CCCc
Q 008611 273 QVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVG-V--PPSP 347 (559)
Q Consensus 273 ~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~-~--~p~~ 347 (559)
.+.++|+.+.+....-. ... ...+++.. ++.+++.|+.++ .+.+||+.+..-...-... . ....
T Consensus 188 ~v~iwd~~~~~~~~~~~---~~~--~v~~~~~~~~~~~~l~~~s~d~------~v~iwd~~~~~~~~~~~~~~~~~~~h~ 256 (393)
T 1erj_A 188 TVRIWDLRTGQCSLTLS---IED--GVTTVAVSPGDGKYIAAGSLDR------AVRVWDSETGFLVERLDSENESGTGHK 256 (393)
T ss_dssp EEEEEETTTTEEEEEEE---CSS--CEEEEEECSTTCCEEEEEETTS------CEEEEETTTCCEEEEEC------CCCS
T ss_pred cEEEEECCCCeeEEEEE---cCC--CcEEEEEECCCCCEEEEEcCCC------cEEEEECCCCcEEEeecccccCCCCCC
Confidence 58889998887544321 111 11222222 457778887643 4788898876543321110 0 0011
Q ss_pred ccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCC
Q 008611 348 RSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTM 384 (559)
Q Consensus 348 r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~ 384 (559)
..-.++++..++.+++.|+.+ ..+.+||+.+.
T Consensus 257 ~~v~~v~~~~~g~~l~s~s~d-----~~v~~wd~~~~ 288 (393)
T 1erj_A 257 DSVYSVVFTRDGQSVVSGSLD-----RSVKLWNLQNA 288 (393)
T ss_dssp SCEEEEEECTTSSEEEEEETT-----SEEEEEEC---
T ss_pred CCEEEEEECCCCCEEEEEeCC-----CEEEEEECCCC
Confidence 112234444455577777654 35778887653
No 94
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=93.10 E-value=6.4 Score=39.09 Aligned_cols=104 Identities=15% Similarity=0.192 Sum_probs=55.8
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe--CCEEEEEeccCCCCCCcc
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHTKDPSEII 272 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~ 272 (559)
++.+++.|+.+ ..+.+||+.+..-... .. .....-.++.+ ++.+++.|+.+.
T Consensus 108 ~~~~l~~~~~d-----g~i~iwd~~~~~~~~~--~~-------------~h~~~v~~~~~~~~~~~l~s~s~d~------ 161 (420)
T 3vl1_A 108 QMRRFILGTTE-----GDIKVLDSNFNLQREI--DQ-------------AHVSEITKLKFFPSGEALISSSQDM------ 161 (420)
T ss_dssp SSCEEEEEETT-----SCEEEECTTSCEEEEE--TT-------------SSSSCEEEEEECTTSSEEEEEETTS------
T ss_pred CCCEEEEEECC-----CCEEEEeCCCcceeee--cc-------------cccCccEEEEECCCCCEEEEEeCCC------
Confidence 56777887743 3588888887654332 10 11111222233 566777777643
Q ss_pred eEEEEECCCCeEEE-eccCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEEEECCCCce
Q 008611 273 QVKVFDLQTCSWST-LKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTW 335 (559)
Q Consensus 273 ~v~~yd~~t~~W~~-~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W 335 (559)
.+.+||+.+.+-.. +. .. ...-.+++.. ++..++.|+.++ .+.+||+.+.+-
T Consensus 162 ~i~iwd~~~~~~~~~~~---~h--~~~v~~~~~~~~~~~l~s~~~d~------~v~iwd~~~~~~ 215 (420)
T 3vl1_A 162 QLKIWSVKDGSNPRTLI---GH--RATVTDIAIIDRGRNVLSASLDG------TIRLWECGTGTT 215 (420)
T ss_dssp EEEEEETTTCCCCEEEE---CC--SSCEEEEEEETTTTEEEEEETTS------CEEEEETTTTEE
T ss_pred eEEEEeCCCCcCceEEc---CC--CCcEEEEEEcCCCCEEEEEcCCC------cEEEeECCCCce
Confidence 58889988754221 11 00 1111222233 456666776543 478889877654
No 95
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=93.09 E-value=4.1 Score=39.48 Aligned_cols=163 Identities=10% Similarity=0.081 Sum_probs=77.4
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCC-EEEEEeccCCCCCCcce
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWEN-KLLSIAGHTKDPSEIIQ 273 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~ 273 (559)
+++||+.+... ....+++||+.+++++.+..... ......+.+..-++ .||+.+.. ...
T Consensus 50 dg~l~~~~~~~---~~~~v~~~~~~~g~~~~~~~~~~-----------~~~~p~~~a~spdg~~l~~~~~~------~~~ 109 (347)
T 3hfq_A 50 KDCLYSVDKED---DEGGIAAWQIDGQTAHKLNTVVA-----------PGTPPAYVAVDEARQLVYSANYH------KGT 109 (347)
T ss_dssp TCEEEEEEEET---TEEEEEEEEEETTEEEEEEEEEE-----------ESCCCSEEEEETTTTEEEEEETT------TTE
T ss_pred CCeEEEEEecC---CCceEEEEEecCCcEEEeeeeec-----------CCCCCEEEEECCCCCEEEEEeCC------CCE
Confidence 56777775311 12579999998888877654210 01111222222345 46655422 235
Q ss_pred EEEEECC-CCeEEEec---cCCCCCCCcc----ceEEEEE-CCEEEEEcCcCCCCCCcCceEEEECC-CCceEEecCCCC
Q 008611 274 VKVFDLQ-TCSWSTLK---TYGKPPVSRG----GQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLE-TMTWDEIDAVGV 343 (559)
Q Consensus 274 v~~yd~~-t~~W~~~~---~~g~~p~~r~----~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~-t~~W~~~~~~~~ 343 (559)
+.+||+. +.....+. ..+..|.+|. -+.++.. ++++|+.+.. .+.+.+|++. +.....+....
T Consensus 110 v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~------~~~v~~~~~~~~g~~~~~~~~~- 182 (347)
T 3hfq_A 110 AEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLG------SDKVYVYNVSDAGQLSEQSVLT- 182 (347)
T ss_dssp EEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETT------TTEEEEEEECTTSCEEEEEEEE-
T ss_pred EEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCC------CCEEEEEEECCCCcEEEeeeEE-
Confidence 7777774 33333332 2222222221 2223332 4567765532 2468889887 55555443110
Q ss_pred CCCcccccEEEEEcCC-EEEEEcCCCCCCCcCceEEEECC--CCeeEec
Q 008611 344 PPSPRSDHAAAVHAER-YLLIFGGGSHAACFNDLHVLDLQ--TMEWSRP 389 (559)
Q Consensus 344 ~p~~r~~~~~~~~~~~-~l~v~GG~~~~~~~~dv~~~d~~--~~~W~~~ 389 (559)
.+....-..+++..++ +||+.+... +.+.+|++. +..+..+
T Consensus 183 ~~~g~~p~~~~~spdg~~l~v~~~~~-----~~v~v~~~~~~~g~~~~~ 226 (347)
T 3hfq_A 183 MEAGFGPRHLVFSPDGQYAFLAGELS-----SQIASLKYDTQTGAFTQL 226 (347)
T ss_dssp CCTTCCEEEEEECTTSSEEEEEETTT-----TEEEEEEEETTTTEEEEE
T ss_pred cCCCCCCceEEECCCCCEEEEEeCCC-----CEEEEEEecCCCCceEEe
Confidence 1111111224444444 577765432 345555544 5666544
No 96
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=93.07 E-value=1.7 Score=44.12 Aligned_cols=149 Identities=7% Similarity=0.100 Sum_probs=76.5
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe---CCEEEEEeccCCCCCCc
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW---ENKLLSIAGHTKDPSEI 271 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~ 271 (559)
++.+++.|+.++ .+.++|+.+..-..+.... .....-.++.+ ++.+++.||.++
T Consensus 131 ~~~~lasGs~dg-----~i~lWd~~~~~~~~~~~~~-------------gH~~~V~~l~f~p~~~~~l~s~s~D~----- 187 (435)
T 4e54_B 131 HPSTVAVGSKGG-----DIMLWNFGIKDKPTFIKGI-------------GAGGSITGLKFNPLNTNQFYASSMEG----- 187 (435)
T ss_dssp CTTCEEEEETTS-----CEEEECSSCCSCCEEECCC-------------SSSCCCCEEEECSSCTTEEEEECSSS-----
T ss_pred CCCEEEEEeCCC-----EEEEEECCCCCceeEEEcc-------------CCCCCEEEEEEeCCCCCEEEEEeCCC-----
Confidence 456888887443 5788888776543332211 00111122222 566777777654
Q ss_pred ceEEEEECCCCeEEEeccCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccc
Q 008611 272 IQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSD 350 (559)
Q Consensus 272 ~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~ 350 (559)
.+.++|+.+.....+...... .....++... ++.+++.|+.+ ..|.+||+.+..-..+.. ....-
T Consensus 188 -~v~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~g~~d------g~i~~wd~~~~~~~~~~~-----h~~~v 253 (435)
T 4e54_B 188 -TTRLQDFKGNILRVFASSDTI--NIWFCSLDVSASSRMVVTGDNV------GNVILLNMDGKELWNLRM-----HKKKV 253 (435)
T ss_dssp -CEEEEETTSCEEEEEECCSSC--SCCCCCEEEETTTTEEEEECSS------SBEEEEESSSCBCCCSBC-----CSSCE
T ss_pred -EEEEeeccCCceeEEeccCCC--CccEEEEEECCCCCEEEEEeCC------CcEeeeccCcceeEEEec-----ccceE
Confidence 488889988876665432111 1112223333 56777888754 347888886543221110 11111
Q ss_pred cEEEEEc-CCEEEEEcCCCCCCCcCceEEEECCCCe
Q 008611 351 HAAAVHA-ERYLLIFGGGSHAACFNDLHVLDLQTME 385 (559)
Q Consensus 351 ~~~~~~~-~~~l~v~GG~~~~~~~~dv~~~d~~~~~ 385 (559)
.++++.. +..+++.|+.+ ..|.+||+.+..
T Consensus 254 ~~v~~~p~~~~~~~s~s~d-----~~v~iwd~~~~~ 284 (435)
T 4e54_B 254 THVALNPCCDWFLATASVD-----QTVKIWDLRQVR 284 (435)
T ss_dssp EEEEECTTCSSEEEEEETT-----SBCCEEETTTCC
T ss_pred EeeeecCCCceEEEEecCc-----ceeeEEeccccc
Confidence 2233322 33467777654 246678876643
No 97
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=93.06 E-value=6.1 Score=37.62 Aligned_cols=148 Identities=5% Similarity=-0.081 Sum_probs=75.9
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCCCCCcceE
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQV 274 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v 274 (559)
++.||++.-. ...+++||+.++....... ..+..+.+..-++.+|+.. .+.+
T Consensus 24 ~~~l~~~d~~-----~~~i~~~d~~~~~~~~~~~---------------~~~~~~i~~~~dG~l~v~~--------~~~l 75 (297)
T 3g4e_A 24 SNSLLFVDIP-----AKKVCRWDSFTKQVQRVTM---------------DAPVSSVALRQSGGYVATI--------GTKF 75 (297)
T ss_dssp TTEEEEEETT-----TTEEEEEETTTCCEEEEEC---------------SSCEEEEEEBTTSSEEEEE--------TTEE
T ss_pred CCEEEEEECC-----CCEEEEEECCCCcEEEEeC---------------CCceEEEEECCCCCEEEEE--------CCeE
Confidence 4678887642 2568999999887654422 1111222222256766643 1479
Q ss_pred EEEECCCCeEEEeccCCC-CCCCccceEEEEECCEEEEEcCcCCC-----CCCcCceEEEECCCCceEEecCCCCCCCcc
Q 008611 275 KVFDLQTCSWSTLKTYGK-PPVSRGGQSVTLVGTSLVIFGGEDAK-----RSLLNDLHILDLETMTWDEIDAVGVPPSPR 348 (559)
Q Consensus 275 ~~yd~~t~~W~~~~~~g~-~p~~r~~~~~~~~~~~lyv~GG~~~~-----~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r 348 (559)
.+||+.+++++.+..... .+..+....++.-++++|+-.-.... ......++++++. .....+... ..
T Consensus 76 ~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~-----~~ 149 (297)
T 3g4e_A 76 CALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQ-----VD 149 (297)
T ss_dssp EEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEE-----ES
T ss_pred EEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEeec-----cc
Confidence 999999999887753211 12112221122225677763211110 0123568888875 333333211 11
Q ss_pred cccEEEEEcC-CEEEEEcCCCCCCCcCceEEEEC
Q 008611 349 SDHAAAVHAE-RYLLIFGGGSHAACFNDLHVLDL 381 (559)
Q Consensus 349 ~~~~~~~~~~-~~l~v~GG~~~~~~~~dv~~~d~ 381 (559)
....+++..+ +.||+.... .+.|++||+
T Consensus 150 ~pngi~~spdg~~lyv~~~~-----~~~i~~~~~ 178 (297)
T 3g4e_A 150 ISNGLDWSLDHKIFYYIDSL-----SYSVDAFDY 178 (297)
T ss_dssp BEEEEEECTTSCEEEEEEGG-----GTEEEEEEE
T ss_pred cccceEEcCCCCEEEEecCC-----CCcEEEEec
Confidence 1124444444 457776542 246888886
No 98
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=93.06 E-value=0.085 Score=44.84 Aligned_cols=51 Identities=16% Similarity=0.130 Sum_probs=38.1
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 508 HPETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 508 ~~~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
++++.+..+..|+.++.+.+.+++...+++.+|+.++.+++.++.+|+.+|
T Consensus 83 ~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 83 DIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555667777777777777788888888888888888888887777765
No 99
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=92.88 E-value=5.4 Score=39.40 Aligned_cols=162 Identities=9% Similarity=-0.047 Sum_probs=76.3
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCC-CCCCCCCCCCCCccceeEEeCCEEEEEeccCCCCCCcce
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAES-TESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQ 273 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~-~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~ 273 (559)
++..++.|+.+ ..+.+||+.++.....-....... ........+....-.+++...+..+++|+.+ ..
T Consensus 160 ~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------g~ 228 (425)
T 1r5m_A 160 DGTHIISMDVE-----NVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK------GA 228 (425)
T ss_dssp TSSEEEEEETT-----CCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGG------GC
T ss_pred CCCEEEEEecC-----CeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCC------Ce
Confidence 44555566532 458889988876543322110000 0000000000111222333334446666654 35
Q ss_pred EEEEECCCCeEEEeccCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccccE
Q 008611 274 VKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHA 352 (559)
Q Consensus 274 v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~ 352 (559)
+..||+.+.+-...-. .. ...-.+++.. ++.+++.|+.+ ..+.+||+.+......-. .....-.+
T Consensus 229 i~~~d~~~~~~~~~~~---~~-~~~i~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~----~~~~~i~~ 294 (425)
T 1r5m_A 229 IFVYQITEKTPTGKLI---GH-HGPISVLEFNDTNKLLLSASDD------GTLRIWHGGNGNSQNCFY----GHSQSIVS 294 (425)
T ss_dssp EEEEETTCSSCSEEEC---CC-SSCEEEEEEETTTTEEEEEETT------SCEEEECSSSBSCSEEEC----CCSSCEEE
T ss_pred EEEEEcCCCceeeeec---cC-CCceEEEEECCCCCEEEEEcCC------CEEEEEECCCCccceEec----CCCccEEE
Confidence 8899988764322210 11 1111223333 45666677643 347888887654322211 12222344
Q ss_pred EEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeE
Q 008611 353 AAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWS 387 (559)
Q Consensus 353 ~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~ 387 (559)
++...++ +++.|+.+ ..+.+||+.+..-.
T Consensus 295 ~~~~~~~-~l~~~~~d-----~~i~i~d~~~~~~~ 323 (425)
T 1r5m_A 295 ASWVGDD-KVISCSMD-----GSVRLWSLKQNTLL 323 (425)
T ss_dssp EEEETTT-EEEEEETT-----SEEEEEETTTTEEE
T ss_pred EEECCCC-EEEEEeCC-----CcEEEEECCCCcEe
Confidence 5555566 66666643 46889999876543
No 100
>4f7g_A Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus}
Probab=92.88 E-value=0.19 Score=46.64 Aligned_cols=69 Identities=22% Similarity=0.219 Sum_probs=52.4
Q ss_pred ccCCCChhhHHHHhhheeeeecCCCCCCC--CCCCChh------------hhhhHHHHhcCCCCCHHHHHHHHHHHHHHh
Q 008611 36 LTSKFSNDSALLLYALYQQATVGPCNVPK--PSSWSPV------------EQSKWKSWQGLGNMATTEAMRLFVKILEEE 101 (559)
Q Consensus 36 ~~~~~~~~~~l~ly~l~kqa~~g~~~~~~--p~~~~~~------------~~~k~~aw~~~~~~s~~~a~~~yv~~~~~~ 101 (559)
+.-..+.++.++|=||--||..||++... |+.++.. .+.=.+.|+++.|||++||+.+|++++.++
T Consensus 43 G~~~~~~e~a~~LAal~~Qae~Gd~~~~~~~~~~~~l~~~lP~~~~~~~~~~~I~~~h~~~~g~s~~eA~~~yL~~~~~l 122 (222)
T 4f7g_A 43 GSHPVSFDKACEFAGFQCQIQFGPHNEQKHKAGFLDLKDFLPKEYVKQKGERKIFQAHKNCGQMSEIEAKVRYVKLARSL 122 (222)
T ss_dssp TSSCCCHHHHHHHHHHHHHHHHCSCCTTTSCSSCSCGGGTSCGGGGGGCCHHHHHHHHHTTTTCCHHHHHHHHHHHHHTS
T ss_pred CcccCCHHHHHHHHHHHHHHHHCCCCchhcccCccchhhccCHHHHhhhhHHHHHHHHHhccCCCHHHHHHHHHHHHhhc
Confidence 35578999999999999999999997642 3332210 111246799999999999999999999866
Q ss_pred CCCc
Q 008611 102 DPGW 105 (559)
Q Consensus 102 ~~~~ 105 (559)
|.|
T Consensus 123 -~~y 125 (222)
T 4f7g_A 123 -KTY 125 (222)
T ss_dssp -TTT
T ss_pred -ccc
Confidence 554
No 101
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=92.74 E-value=5 Score=39.65 Aligned_cols=149 Identities=7% Similarity=0.051 Sum_probs=74.2
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe--CCEEEEEeccCCCCCCcc
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHTKDPSEII 272 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~ 272 (559)
++.+++.|+.+ ..+.+||.....-..+.. ....-..+.+ ++..++.|+.+.
T Consensus 119 ~~~~l~~~~~d-----g~i~i~~~~~~~~~~~~~----------------~~~~v~~~~~~~~~~~l~~~~~d~------ 171 (425)
T 1r5m_A 119 DGNSIVTGVEN-----GELRLWNKTGALLNVLNF----------------HRAPIVSVKWNKDGTHIISMDVEN------ 171 (425)
T ss_dssp TSSEEEEEETT-----SCEEEEETTSCEEEEECC----------------CCSCEEEEEECTTSSEEEEEETTC------
T ss_pred CCCEEEEEeCC-----CeEEEEeCCCCeeeeccC----------------CCccEEEEEECCCCCEEEEEecCC------
Confidence 45677777643 357888844433333321 1111122223 566666776543
Q ss_pred eEEEEECCCCeEEEeccCCCCCC-----------CccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCC
Q 008611 273 QVKVFDLQTCSWSTLKTYGKPPV-----------SRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAV 341 (559)
Q Consensus 273 ~v~~yd~~t~~W~~~~~~g~~p~-----------~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~ 341 (559)
.+..||+.+.+....-.....+. .....++....+..+++|+.+ +.+.+||+.+..-...-.
T Consensus 172 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------g~i~~~d~~~~~~~~~~~- 244 (425)
T 1r5m_A 172 VTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK------GAIFVYQITEKTPTGKLI- 244 (425)
T ss_dssp CEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGG------GCEEEEETTCSSCSEEEC-
T ss_pred eEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCC------CeEEEEEcCCCceeeeec-
Confidence 48889988876544321111110 000222333334446666653 458899988754322211
Q ss_pred CCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCe
Q 008611 342 GVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTME 385 (559)
Q Consensus 342 ~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~ 385 (559)
.....-.+++...++.+++.|+.+ ..+.+||+.+..
T Consensus 245 ---~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~ 280 (425)
T 1r5m_A 245 ---GHHGPISVLEFNDTNKLLLSASDD-----GTLRIWHGGNGN 280 (425)
T ss_dssp ---CCSSCEEEEEEETTTTEEEEEETT-----SCEEEECSSSBS
T ss_pred ---cCCCceEEEEECCCCCEEEEEcCC-----CEEEEEECCCCc
Confidence 111222344454455566676643 357888887643
No 102
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=92.72 E-value=4 Score=38.72 Aligned_cols=155 Identities=10% Similarity=0.134 Sum_probs=77.0
Q ss_pred CEEEEEccCCCCcccCcEEEEEcCCCeEEEe-eeccccCCCCCCCCCCCCCCccceeEE-eCCEEEEEeccC--------
Q 008611 196 DKMYIYGGNHNGRYLSDMHILDLRSWAWSKI-QAKAVAESTESPSPALLTPCAGHSLIP-WENKLLSIAGHT-------- 265 (559)
Q Consensus 196 ~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~-~~~~~~~~~~~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~-------- 265 (559)
++||+.+.. +.+++||+. ++...+ .... ...+..+ -+.++. -++.+|+.....
T Consensus 83 g~l~v~~~~------~~l~~~d~~-g~~~~~~~~~~---------~~~~~~~-~~~i~~d~~g~l~v~~~~~~~~~~~~~ 145 (314)
T 1pjx_A 83 NQLFVADMR------LGLLVVQTD-GTFEEIAKKDS---------EGRRMQG-CNDCAFDYEGNLWITAPAGEVAPADYT 145 (314)
T ss_dssp SEEEEEETT------TEEEEEETT-SCEEECCSBCT---------TSCBCBC-CCEEEECTTSCEEEEECBCBCTTSCCC
T ss_pred CcEEEEECC------CCEEEEeCC-CCEEEEEeccC---------CCccccC-CcCEEECCCCCEEEEecCccccccccc
Confidence 688887641 369999998 776655 3211 0011111 122222 267888765432
Q ss_pred -CCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEE----C-C-EEEEEcCcCCCCCCcCceEEEECC-CCceEE
Q 008611 266 -KDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV----G-T-SLVIFGGEDAKRSLLNDLHILDLE-TMTWDE 337 (559)
Q Consensus 266 -~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~----~-~-~lyv~GG~~~~~~~~~~~~~yd~~-t~~W~~ 337 (559)
........+++||+. .+...+... ...+ ..++.. . + .||+.... .+.+++||+. +..+..
T Consensus 146 ~~~~~~~~~l~~~~~~-g~~~~~~~~--~~~~---~~i~~~~~~d~dg~~l~v~~~~------~~~i~~~~~~~~g~~~~ 213 (314)
T 1pjx_A 146 RSMQEKFGSIYCFTTD-GQMIQVDTA--FQFP---NGIAVRHMNDGRPYQLIVAETP------TKKLWSYDIKGPAKIEN 213 (314)
T ss_dssp BTTSSSCEEEEEECTT-SCEEEEEEE--ESSE---EEEEEEECTTSCEEEEEEEETT------TTEEEEEEEEETTEEEE
T ss_pred ccccCCCCeEEEECCC-CCEEEeccC--CCCc---ceEEEecccCCCCCEEEEEECC------CCeEEEEECCCCCcccc
Confidence 111223679999987 665554311 1111 223333 2 3 57776532 2468889875 444322
Q ss_pred ecCCCCCCCc--ccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCC
Q 008611 338 IDAVGVPPSP--RSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTM 384 (559)
Q Consensus 338 ~~~~~~~p~~--r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~ 384 (559)
.......+.. ..-..+++..++.||+.... .+.|.+||+.+.
T Consensus 214 ~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~-----~~~i~~~d~~~g 257 (314)
T 1pjx_A 214 KKVWGHIPGTHEGGADGMDFDEDNNLLVANWG-----SSHIEVFGPDGG 257 (314)
T ss_dssp EEEEEECCCCSSCEEEEEEEBTTCCEEEEEET-----TTEEEEECTTCB
T ss_pred ceEEEECCCCCCCCCCceEECCCCCEEEEEcC-----CCEEEEEcCCCC
Confidence 1110001111 11233444455668876422 135899998744
No 103
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=92.60 E-value=8.3 Score=37.77 Aligned_cols=153 Identities=12% Similarity=0.022 Sum_probs=78.1
Q ss_pred CcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccC
Q 008611 211 SDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTY 290 (559)
Q Consensus 211 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~ 290 (559)
..+|++|+.++.-..+.... ..........-+++.++++... ..++.+|+.+.+-..+..
T Consensus 60 ~~l~~~d~~~g~~~~lt~~~-------------~~~~~~~~~spdg~~l~~~~~~------~~l~~~d~~~g~~~~~~~- 119 (388)
T 3pe7_A 60 WNYYLLDLNTQVATQLTEGR-------------GDNTFGGFLSPDDDALFYVKDG------RNLMRVDLATLEENVVYQ- 119 (388)
T ss_dssp CEEEEEETTTCEEEECCCSS-------------CBCSSSCEECTTSSEEEEEETT------TEEEEEETTTCCEEEEEE-
T ss_pred ceEEEEeCCCCceEEeeeCC-------------CCCccceEEcCCCCEEEEEeCC------CeEEEEECCCCcceeeee-
Confidence 47999999998877764321 1111112223355544444432 479999999987665542
Q ss_pred CCCCCCccceEEEE--ECCEEEEE-c--CcCC-------------CCCCcCceEEEECCCCceEEecCCCCCCCcccccE
Q 008611 291 GKPPVSRGGQSVTL--VGTSLVIF-G--GEDA-------------KRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHA 352 (559)
Q Consensus 291 g~~p~~r~~~~~~~--~~~~lyv~-G--G~~~-------------~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~ 352 (559)
.|.......... -++++++. - +... .......|+++|+.+.+-..+... ... ...
T Consensus 120 --~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~----~~~-~~~ 192 (388)
T 3pe7_A 120 --VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQE----NQW-LGH 192 (388)
T ss_dssp --CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEE----SSC-EEE
T ss_pred --chhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecC----Ccc-ccc
Confidence 233222212221 13333321 1 0000 011236799999998877666422 111 223
Q ss_pred EEEEc-CCEEEEEcCCC-CCCCcCceEEEECCCCeeEecc
Q 008611 353 AAVHA-ERYLLIFGGGS-HAACFNDLHVLDLQTMEWSRPT 390 (559)
Q Consensus 353 ~~~~~-~~~l~v~GG~~-~~~~~~dv~~~d~~~~~W~~~~ 390 (559)
..+.. ++..+++.... .......||.+|+.+.....+.
T Consensus 193 ~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~ 232 (388)
T 3pe7_A 193 PIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVK 232 (388)
T ss_dssp EEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESC
T ss_pred cEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEee
Confidence 34444 44444443322 1222458999999887766663
No 104
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=92.60 E-value=8.4 Score=37.77 Aligned_cols=145 Identities=10% Similarity=0.061 Sum_probs=79.2
Q ss_pred EEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe---CCEEEEEeccCCCCCCcce
Q 008611 197 KMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW---ENKLLSIAGHTKDPSEIIQ 273 (559)
Q Consensus 197 ~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~ 273 (559)
.+++.|+.+ ..+.+||+.+.......... .....-.++.+ ++.+++.|+.+ ..
T Consensus 87 ~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~-------------~h~~~v~~~~~~~~~~~~l~s~~~d------~~ 142 (383)
T 3ei3_B 87 TTVAVGSKG-----GDIILWDYDVQNKTSFIQGM-------------GPGDAITGMKFNQFNTNQLFVSSIR------GA 142 (383)
T ss_dssp TEEEEEEBT-----SCEEEEETTSTTCEEEECCC-------------STTCBEEEEEEETTEEEEEEEEETT------TE
T ss_pred CEEEEEcCC-----CeEEEEeCCCcccceeeecC-------------CcCCceeEEEeCCCCCCEEEEEeCC------CE
Confidence 577777743 36889999887766543211 11111222223 34677777654 35
Q ss_pred EEEEECCCCeEEEeccCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccccE
Q 008611 274 VKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHA 352 (559)
Q Consensus 274 v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~ 352 (559)
+.++|+.+.....+... ......-.+++.. ++.+++.|+.+ ..+.+||+.......+.. ....-.+
T Consensus 143 i~iwd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~-----h~~~v~~ 209 (383)
T 3ei3_B 143 TTLRDFSGSVIQVFAKT--DSWDYWYCCVDVSVSRQMLATGDST------GRLLLLGLDGHEIFKEKL-----HKAKVTH 209 (383)
T ss_dssp EEEEETTSCEEEEEECC--CCSSCCEEEEEEETTTTEEEEEETT------SEEEEEETTSCEEEEEEC-----SSSCEEE
T ss_pred EEEEECCCCceEEEecc--CCCCCCeEEEEECCCCCEEEEECCC------CCEEEEECCCCEEEEecc-----CCCcEEE
Confidence 88899998777666421 1111111222222 45677777654 358889986544444431 1112233
Q ss_pred EEEEcCCE-EEEEcCCCCCCCcCceEEEECCC
Q 008611 353 AAVHAERY-LLIFGGGSHAACFNDLHVLDLQT 383 (559)
Q Consensus 353 ~~~~~~~~-l~v~GG~~~~~~~~dv~~~d~~~ 383 (559)
++...++. +++.|+.+ ..+.+||+.+
T Consensus 210 ~~~~~~~~~~l~s~~~d-----~~i~iwd~~~ 236 (383)
T 3ei3_B 210 AEFNPRCDWLMATSSVD-----ATVKLWDLRN 236 (383)
T ss_dssp EEECSSCTTEEEEEETT-----SEEEEEEGGG
T ss_pred EEECCCCCCEEEEEeCC-----CEEEEEeCCC
Confidence 44444444 77777653 3588888876
No 105
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=92.54 E-value=1.8 Score=43.98 Aligned_cols=110 Identities=8% Similarity=0.075 Sum_probs=61.1
Q ss_pred CCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCcCceEEEECCC
Q 008611 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLET 332 (559)
Q Consensus 255 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t 332 (559)
++.+++.|+.++. |.++|+.+..-..+... ......-.+++.. ++.+++.|+.++ .|.++|+.+
T Consensus 131 ~~~~lasGs~dg~------i~lWd~~~~~~~~~~~~--~gH~~~V~~l~f~p~~~~~l~s~s~D~------~v~iwd~~~ 196 (435)
T 4e54_B 131 HPSTVAVGSKGGD------IMLWNFGIKDKPTFIKG--IGAGGSITGLKFNPLNTNQFYASSMEG------TTRLQDFKG 196 (435)
T ss_dssp CTTCEEEEETTSC------EEEECSSCCSCCEEECC--CSSSCCCCEEEECSSCTTEEEEECSSS------CEEEEETTS
T ss_pred CCCEEEEEeCCCE------EEEEECCCCCceeEEEc--cCCCCCEEEEEEeCCCCCEEEEEeCCC------EEEEeeccC
Confidence 4567778877543 88888877654333211 0111111222322 456777777653 377889988
Q ss_pred CceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCe
Q 008611 333 MTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTME 385 (559)
Q Consensus 333 ~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~ 385 (559)
.....+.... .......++.+..++.+++.|+.+ ..|.+||+....
T Consensus 197 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~g~~d-----g~i~~wd~~~~~ 242 (435)
T 4e54_B 197 NILRVFASSD--TINIWFCSLDVSASSRMVVTGDNV-----GNVILLNMDGKE 242 (435)
T ss_dssp CEEEEEECCS--SCSCCCCCEEEETTTTEEEEECSS-----SBEEEEESSSCB
T ss_pred CceeEEeccC--CCCccEEEEEECCCCCEEEEEeCC-----CcEeeeccCcce
Confidence 7766554321 122222344555566688888754 357888887643
No 106
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=92.52 E-value=8.1 Score=37.44 Aligned_cols=108 Identities=14% Similarity=0.100 Sum_probs=57.7
Q ss_pred CCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEEEECCCC
Q 008611 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETM 333 (559)
Q Consensus 255 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~ 333 (559)
++.+++.|+.+. .+..+|+.+..-...-. .... .-.+++.. ++.+++.|+.++ .+.+||+.+.
T Consensus 195 ~~~~l~sg~~d~------~v~~wd~~~~~~~~~~~---~h~~-~v~~v~~~p~~~~l~s~s~d~------~v~iwd~~~~ 258 (340)
T 1got_B 195 DTRLFVSGACDA------SAKLWDVREGMCRQTFT---GHES-DINAICFFPNGNAFATGSDDA------TCRLFDLRAD 258 (340)
T ss_dssp TSSEEEEEETTS------CEEEEETTTCSEEEEEC---CCSS-CEEEEEECTTSSEEEEEETTS------CEEEEETTTT
T ss_pred CCCEEEEEeCCC------cEEEEECCCCeeEEEEc---CCcC-CEEEEEEcCCCCEEEEEcCCC------cEEEEECCCC
Confidence 567888887654 48888988765432211 0111 11122222 457777777543 4788998776
Q ss_pred ceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCe
Q 008611 334 TWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTME 385 (559)
Q Consensus 334 ~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~ 385 (559)
.-...-.. ......-.+++...++.+++.|+.+ ..+.+||+.+..
T Consensus 259 ~~~~~~~~--~~~~~~v~~~~~s~~g~~l~~g~~d-----~~i~vwd~~~~~ 303 (340)
T 1got_B 259 QELMTYSH--DNIICGITSVSFSKSGRLLLAGYDD-----FNCNVWDALKAD 303 (340)
T ss_dssp EEEEEECC--TTCCSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTCC
T ss_pred cEEEEEcc--CCcccceEEEEECCCCCEEEEECCC-----CeEEEEEcccCc
Confidence 53322111 0111112233444456677777653 358889976643
No 107
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=92.52 E-value=6 Score=38.11 Aligned_cols=152 Identities=9% Similarity=0.048 Sum_probs=74.1
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe--CCEEEEEeccCCCCCCcc
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHTKDPSEII 272 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~ 272 (559)
++.+++.|+.+ ..+.+||+.+++-...-. .....-.++.+ ++.+++.|+.+ .
T Consensus 43 ~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~---------------~h~~~v~~~~~~~~~~~l~s~~~d------g 96 (369)
T 3zwl_B 43 EGDLLFSCSKD-----SSASVWYSLNGERLGTLD---------------GHTGTIWSIDVDCFTKYCVTGSAD------Y 96 (369)
T ss_dssp TSCEEEEEESS-----SCEEEEETTTCCEEEEEC---------------CCSSCEEEEEECTTSSEEEEEETT------T
T ss_pred CCCEEEEEeCC-----CEEEEEeCCCchhhhhhh---------------hcCCcEEEEEEcCCCCEEEEEeCC------C
Confidence 45566666633 368889988765433211 11111222233 56677777764 3
Q ss_pred eEEEEECCCCeEEEeccCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEEEECCCCc----eEEecCCC-----
Q 008611 273 QVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMT----WDEIDAVG----- 342 (559)
Q Consensus 273 ~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~----W~~~~~~~----- 342 (559)
.+.+||+.+.+....-. .+. .-.++... ++..++.++.+... ....+.+||+.+.. +.......
T Consensus 97 ~i~iwd~~~~~~~~~~~---~~~--~v~~~~~~~~~~~l~~~~~~~~~-~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 170 (369)
T 3zwl_B 97 SIKLWDVSNGQCVATWK---SPV--PVKRVEFSPCGNYFLAILDNVMK-NPGSINIYEIERDSATHELTKVSEEPIHKII 170 (369)
T ss_dssp EEEEEETTTCCEEEEEE---CSS--CEEEEEECTTSSEEEEEECCBTT-BCCEEEEEEEEECTTTCCEEEECSSCSEEEE
T ss_pred eEEEEECCCCcEEEEee---cCC--CeEEEEEccCCCEEEEecCCccC-CCCEEEEEEecCCccceeecccccceeeecc
Confidence 58899998877544432 111 11222222 44555555543111 12457777765432 22211100
Q ss_pred CCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCC
Q 008611 343 VPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQT 383 (559)
Q Consensus 343 ~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~ 383 (559)
.........+++...++..++.|+.+ ..+.+||+.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~ 206 (369)
T 3zwl_B 171 THEGLDAATVAGWSTKGKYIIAGHKD-----GKISKYDVSN 206 (369)
T ss_dssp CCTTCCCEEEEEECGGGCEEEEEETT-----SEEEEEETTT
T ss_pred CCcCccceeEEEEcCCCCEEEEEcCC-----CEEEEEECCC
Confidence 00000022333344455566776643 4588999987
No 108
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=92.36 E-value=13 Score=40.46 Aligned_cols=120 Identities=16% Similarity=0.114 Sum_probs=66.9
Q ss_pred CCEEEEEeccCCCCCCcceEEEEECCC------C--eEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceE
Q 008611 255 ENKLLSIAGHTKDPSEIIQVKVFDLQT------C--SWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLH 326 (559)
Q Consensus 255 ~~~lyv~GG~~~~~~~~~~v~~yd~~t------~--~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~ 326 (559)
+++.++++..... ...+.++.+|+.+ . .+..+... ...........++.||+.+..+.. ...|+
T Consensus 243 Dg~~l~~~~~~~~-~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~----~~~~~~~~s~dg~~l~~~s~~~~~---~~~l~ 314 (710)
T 2xdw_A 243 DGRYVLLSIREGC-DPVNRLWYCDLQQESNGITGILKWVKLIDN----FEGEYDYVTNEGTVFTFKTNRHSP---NYRLI 314 (710)
T ss_dssp TSCEEEEEEECSS-SSCCEEEEEEGGGSSSSSCSSCCCEEEECS----SSSCEEEEEEETTEEEEEECTTCT---TCEEE
T ss_pred CCCEEEEEEEccC-CCccEEEEEECcccccccCCccceEEeeCC----CCcEEEEEeccCCEEEEEECCCCC---CCEEE
Confidence 5554444433221 1257899999876 4 58777531 111122233346788888764332 35799
Q ss_pred EEECCCC---ceEEecCCCCCCCcc-cccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCe-eEec
Q 008611 327 ILDLETM---TWDEIDAVGVPPSPR-SDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTME-WSRP 389 (559)
Q Consensus 327 ~yd~~t~---~W~~~~~~~~~p~~r-~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~-W~~~ 389 (559)
.+|+.+. .|..+... ... .-..+....++.+++....++ ...|+++|+.++. ...+
T Consensus 315 ~~d~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~lv~~~~~~g---~~~l~~~~~~~g~~~~~l 375 (710)
T 2xdw_A 315 NIDFTDPEESKWKVLVPE----HEKDVLEWVACVRSNFLVLCYLHDV---KNTLQLHDLATGALLKIF 375 (710)
T ss_dssp EEETTSCCGGGCEEEECC----CSSCEEEEEEEETTTEEEEEEEETT---EEEEEEEETTTCCEEEEE
T ss_pred EEeCCCCCcccceeccCC----CCCCeEEEEEEEcCCEEEEEEEECC---EEEEEEEECCCCCEEEec
Confidence 9999875 58887532 221 222333444666776654321 3468999985543 4555
No 109
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=92.34 E-value=3.8 Score=40.25 Aligned_cols=149 Identities=10% Similarity=0.067 Sum_probs=74.7
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe--C-CEEEEEeccCCCCCCc
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--E-NKLLSIAGHTKDPSEI 271 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~-~~lyv~GG~~~~~~~~ 271 (559)
++.+++.|+.+ ..+.++|+.+++-... .. ...... .++.+ + ..+++.|+.+.
T Consensus 138 dg~~l~sgs~d-----~~i~iwd~~~~~~~~~--~~-----------~h~~~V--~~~~~~~~~~~~l~s~s~D~----- 192 (344)
T 4gqb_B 138 SGTQAVSGSKD-----ICIKVWDLAQQVVLSS--YR-----------AHAAQV--TCVAASPHKDSVFLSCSEDN----- 192 (344)
T ss_dssp TSSEEEEEETT-----SCEEEEETTTTEEEEE--EC-----------CCSSCE--EEEEECSSCTTEEEEEETTS-----
T ss_pred CCCEEEEEeCC-----CeEEEEECCCCcEEEE--Ec-----------CcCCce--EEEEecCCCCCceeeecccc-----
Confidence 56677777743 3588889888754322 11 011111 12222 3 35777787654
Q ss_pred ceEEEEECCCCeEEEeccCCCCCCCccceEEEEE---CCEEEEEcCcCCCCCCcCceEEEECCCCce-EEecCCCCCCCc
Q 008611 272 IQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV---GTSLVIFGGEDAKRSLLNDLHILDLETMTW-DEIDAVGVPPSP 347 (559)
Q Consensus 272 ~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W-~~~~~~~~~p~~ 347 (559)
.+.++|+.+.+-...-. .........++.+ ++.+++.|+.++ .|.+||+.+.+- ..+.. ..
T Consensus 193 -~v~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~l~sg~~dg------~v~~wd~~~~~~~~~~~~-----h~ 257 (344)
T 4gqb_B 193 -RILLWDTRCPKPASQIG---CSAPGYLPTSLAWHPQQSEVFVFGDENG------TVSLVDTKSTSCVLSSAV-----HS 257 (344)
T ss_dssp -CEEEEETTSSSCEEECC-------CCCEEEEEECSSCTTEEEEEETTS------EEEEEESCC--CCEEEEC-----CS
T ss_pred -ccccccccccceeeeee---cceeeccceeeeecCCCCcceEEeccCC------cEEEEECCCCcEEEEEcC-----CC
Confidence 48889998876433210 1111111122222 456888887543 478889876532 11211 11
Q ss_pred ccccEEEEEcCC-EEEEEcCCCCCCCcCceEEEECCCCeeEe
Q 008611 348 RSDHAAAVHAER-YLLIFGGGSHAACFNDLHVLDLQTMEWSR 388 (559)
Q Consensus 348 r~~~~~~~~~~~-~l~v~GG~~~~~~~~dv~~~d~~~~~W~~ 388 (559)
..-.++++..++ .+++.|+.+ ..|.+||..+.+-..
T Consensus 258 ~~v~~v~fsp~g~~~lasgs~D-----~~i~vwd~~~~~~~~ 294 (344)
T 4gqb_B 258 QCVTGLVFSPHSVPFLASLSED-----CSLAVLDSSLSELFR 294 (344)
T ss_dssp SCEEEEEECSSSSCCEEEEETT-----SCEEEECTTCCEEEE
T ss_pred CCEEEEEEccCCCeEEEEEeCC-----CeEEEEECCCCcEEE
Confidence 111233333333 466666643 347889988776443
No 110
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=92.33 E-value=0.16 Score=49.36 Aligned_cols=70 Identities=17% Similarity=0.177 Sum_probs=52.8
Q ss_pred ccCCCChhhHHHHhhheeeeecCCCCCCC--CCCCC---hh-----h-----hhhH-----HHHhcCCCCCHHHHHHHHH
Q 008611 36 LTSKFSNDSALLLYALYQQATVGPCNVPK--PSSWS---PV-----E-----QSKW-----KSWQGLGNMATTEAMRLFV 95 (559)
Q Consensus 36 ~~~~~~~~~~l~ly~l~kqa~~g~~~~~~--p~~~~---~~-----~-----~~k~-----~aw~~~~~~s~~~a~~~yv 95 (559)
+.-..+.++.++|=||--||..||++... |+.++ +. . ...| ..|+++.|||+.+|+..|+
T Consensus 110 g~~~~~~e~a~~Laal~~q~~~Gd~~~~~~~~~~l~~~~~lP~~~~~~~~~~~~~~~~~I~~~~~~~~g~s~~~A~~~yL 189 (294)
T 1ef1_A 110 DDIYCPPETAVLLASYAVQSKYGDFNKEVHKSGYLAGDKLLPQRVLEQHKLNKDQWEERIQVWHEEHRGMLREDAVLEYL 189 (294)
T ss_dssp TSSCCCHHHHHHHHHHHHHHHHCSCCTTTSCTTTTTTCCCSCHHHHHHBCCCHHHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHHHhCCCCccccChhhccccccCCHHHHhhcCCCHHHHHHHHHHHHHHccCCCHHHHHHHHH
Confidence 34568899999999999999999998653 44431 11 1 2234 5699999999999999999
Q ss_pred HHHHHhCCCcc
Q 008611 96 KILEEEDPGWY 106 (559)
Q Consensus 96 ~~~~~~~~~~~ 106 (559)
+++.+ .|.|.
T Consensus 190 ~~~~~-lp~yG 199 (294)
T 1ef1_A 190 KIAQD-LEMYG 199 (294)
T ss_dssp HHHTT-STTTT
T ss_pred HHHcc-cCccC
Confidence 99986 45553
No 111
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=92.05 E-value=1.7 Score=42.43 Aligned_cols=109 Identities=12% Similarity=0.233 Sum_probs=61.0
Q ss_pred CCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEEEECCCC
Q 008611 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETM 333 (559)
Q Consensus 255 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~ 333 (559)
++.++++|+.+ ..+.+||+.+.+|..+....... ..-.+++.. ++.+++.|+.+ ..+.+||+.+.
T Consensus 19 ~~~~l~~~~~d------~~v~i~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~l~~~~~d------g~i~vwd~~~~ 84 (372)
T 1k8k_C 19 DRTQIAICPNN------HEVHIYEKSGNKWVQVHELKEHN--GQVTGVDWAPDSNRIVTCGTD------RNAYVWTLKGR 84 (372)
T ss_dssp TSSEEEEECSS------SEEEEEEEETTEEEEEEEEECCS--SCEEEEEEETTTTEEEEEETT------SCEEEEEEETT
T ss_pred CCCEEEEEeCC------CEEEEEeCCCCcEEeeeeecCCC--CcccEEEEeCCCCEEEEEcCC------CeEEEEECCCC
Confidence 56777777653 36889999998776664321111 111222233 45667777653 34888898888
Q ss_pred ceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCC
Q 008611 334 TWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTM 384 (559)
Q Consensus 334 ~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~ 384 (559)
.+...... ......-.++....++.+++.|+.+ ..+.+||+.+.
T Consensus 85 ~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d-----~~v~i~d~~~~ 128 (372)
T 1k8k_C 85 TWKPTLVI--LRINRAARCVRWAPNEKKFAVGSGS-----RVISICYFEQE 128 (372)
T ss_dssp EEEEEEEC--CCCSSCEEEEEECTTSSEEEEEETT-----SSEEEEEEETT
T ss_pred eeeeeEEe--ecCCCceeEEEECCCCCEEEEEeCC-----CEEEEEEecCC
Confidence 77654322 1122223344444455577777643 34666666554
No 112
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=91.97 E-value=5.7 Score=38.99 Aligned_cols=154 Identities=10% Similarity=0.035 Sum_probs=79.8
Q ss_pred CcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe-CCE-EEEEeccCCCCCCcceEEEEECCCCeEEEec
Q 008611 211 SDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-ENK-LLSIAGHTKDPSEIIQVKVFDLQTCSWSTLK 288 (559)
Q Consensus 211 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~-lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 288 (559)
..++++|+.+++...+... .....+....- ++. |++.. ..........++.+|+.+..+..+.
T Consensus 168 ~~l~~~d~~~g~~~~~~~~--------------~~~~~~~~~sp~dg~~l~~~~-~~~~~~~~~~l~~~d~~~~~~~~l~ 232 (396)
T 3c5m_A 168 CRLIKVDIETGELEVIHQD--------------TAWLGHPIYRPFDDSTVGFCH-EGPHDLVDARMWLVNEDGSNVRKIK 232 (396)
T ss_dssp EEEEEEETTTCCEEEEEEE--------------SSCEEEEEEETTEEEEEEEEE-CSCSSSCSCCCEEEETTSCCCEESS
T ss_pred ceEEEEECCCCcEEeeccC--------------CcccccceECCCCCCEEEEEe-cCCCCCCCceEEEEECCCCceeEee
Confidence 4789999999887766432 11222222222 344 44443 2221122367999999888877775
Q ss_pred cCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccccEEEEEc-CCEEEEEcC
Q 008611 289 TYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHA-ERYLLIFGG 366 (559)
Q Consensus 289 ~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~-~~~l~v~GG 366 (559)
.. .+ .......+.. +++.+++....... ....++++|+.+.+...+... +. +..+... ++.++++++
T Consensus 233 ~~--~~-~~~~~~~~~spdg~~l~~~~~~~~~-~~~~l~~~d~~~g~~~~l~~~---~~----~~~~~s~~dg~~l~~~~ 301 (396)
T 3c5m_A 233 EH--AE-GESCTHEFWIPDGSAMAYVSYFKGQ-TDRVIYKANPETLENEEVMVM---PP----CSHLMSNFDGSLMVGDG 301 (396)
T ss_dssp CC--CT-TEEEEEEEECTTSSCEEEEEEETTT-CCEEEEEECTTTCCEEEEEEC---CS----EEEEEECSSSSEEEEEE
T ss_pred cc--CC-CccccceEECCCCCEEEEEecCCCC-ccceEEEEECCCCCeEEeeeC---CC----CCCCccCCCCceEEEec
Confidence 21 11 1111122222 44433333332211 123499999998887776532 21 1134444 555666544
Q ss_pred CCC-----------CCCcCceEEEECCCCeeEecc
Q 008611 367 GSH-----------AACFNDLHVLDLQTMEWSRPT 390 (559)
Q Consensus 367 ~~~-----------~~~~~dv~~~d~~~~~W~~~~ 390 (559)
... ......++++|+.+.....+.
T Consensus 302 ~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~ 336 (396)
T 3c5m_A 302 CDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLC 336 (396)
T ss_dssp CCC----------CCCCCCEEEEEETTTTBCCEEE
T ss_pred CCcceeeccccccccCCCCcEEEEecccCceEEcc
Confidence 221 012357999999887765553
No 113
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=91.91 E-value=8.1 Score=36.06 Aligned_cols=150 Identities=8% Similarity=-0.045 Sum_probs=80.5
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe-CCEEEEEeccCCCCCCcce
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-ENKLLSIAGHTKDPSEIIQ 273 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~ 273 (559)
++.||+.... ...+++||+. +++....... ....-++++.. ++.+|+.... ...
T Consensus 72 ~g~l~v~~~~-----~~~v~~~d~~-g~~~~~~~~~-------------~~~~~~~i~~~~~g~l~v~~~~------~~~ 126 (300)
T 2qc5_A 72 LGDIWFTENG-----ANKIGKLSKK-GGFTEYPLPQ-------------PDSGPYGITEGLNGDIWFTQLN------GDR 126 (300)
T ss_dssp TSCEEEEETT-----TTEEEEECTT-SCEEEEECSS-------------TTCCEEEEEECSTTCEEEEETT------TTE
T ss_pred CCCEEEEecC-----CCeEEEECCC-CCeEEecCCC-------------CCCCCccceECCCCCEEEEccC------CCe
Confidence 4678887531 2458999988 7776543211 11122333333 5788876532 246
Q ss_pred EEEEECCCCeEEEeccCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccccE
Q 008611 274 VKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHA 352 (559)
Q Consensus 274 v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~ 352 (559)
+.+||+. ++........ ....-+.++.. ++.||+.... .+.+++||+ +.++....... ....-.+
T Consensus 127 i~~~~~~-g~~~~~~~~~---~~~~~~~i~~d~~g~l~v~~~~------~~~i~~~~~-~g~~~~~~~~~---~~~~~~~ 192 (300)
T 2qc5_A 127 IGKLTAD-GTIYEYDLPN---KGSYPAFITLGSDNALWFTENQ------NNSIGRITN-TGKLEEYPLPT---NAAAPVG 192 (300)
T ss_dssp EEEECTT-SCEEEEECSS---TTCCEEEEEECTTSSEEEEETT------TTEEEEECT-TCCEEEEECSS---TTCCEEE
T ss_pred EEEECCC-CCEEEccCCC---CCCCceeEEECCCCCEEEEecC------CCeEEEECC-CCcEEEeeCCC---CCCCcce
Confidence 8899988 6666553211 11122233332 4578876532 245899998 66776654211 1112233
Q ss_pred EEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEec
Q 008611 353 AAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRP 389 (559)
Q Consensus 353 ~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~ 389 (559)
+++..++.||+.... .+.+++||+ +..+...
T Consensus 193 i~~d~~g~l~v~~~~-----~~~i~~~~~-~g~~~~~ 223 (300)
T 2qc5_A 193 ITSGNDGALWFVEIM-----GNKIGRITT-TGEISEY 223 (300)
T ss_dssp EEECTTSSEEEEETT-----TTEEEEECT-TCCEEEE
T ss_pred EEECCCCCEEEEccC-----CCEEEEEcC-CCcEEEE
Confidence 444445668876432 235889998 5555544
No 114
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=91.90 E-value=11 Score=37.66 Aligned_cols=136 Identities=14% Similarity=0.139 Sum_probs=70.5
Q ss_pred CcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe--CCEEEEEeccCCCCCCcceEEEEECCCCeEEEec
Q 008611 211 SDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLK 288 (559)
Q Consensus 211 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 288 (559)
+.|+++|..+++...+-... .....-.++.+ ++.+++.|+.++ .+.++|+.+++-....
T Consensus 125 ~tV~lWd~~tg~~~~~~~~~-------------~~~~~V~sv~fspdg~~lasgs~Dg------~v~iWd~~~~~~~~~~ 185 (420)
T 4gga_A 125 NSVYLWSASSGDILQLLQME-------------QPGEYISSVAWIKEGNYLAVGTSSA------EVQLWDVQQQKRLRNM 185 (420)
T ss_dssp TEEEEEETTTCCEEEEEECC-------------STTCCEEEEEECTTSSEEEEEETTS------CEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCCEEEEEEec-------------CCCCcEEEEEECCCCCEEEEEECCC------eEEEEEcCCCcEEEEE
Confidence 35777788887766543321 11111223333 677888888754 4888999887644332
Q ss_pred cCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCC
Q 008611 289 TYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGS 368 (559)
Q Consensus 289 ~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~ 368 (559)
. ... ....+...++.+++.|+.+ ..+..+|..+.........+ ............++..++.|+.+
T Consensus 186 ~---~h~--~~v~~~s~~~~~l~sgs~d------~~i~~~d~~~~~~~~~~~~~---h~~~~~~~~~~~~g~~l~s~~~D 251 (420)
T 4gga_A 186 T---SHS--ARVGSLSWNSYILSSGSRS------GHIHHHDVRVAEHHVATLSG---HSQEVCGLRWAPDGRHLASGGND 251 (420)
T ss_dssp C---CCS--SCEEEEEEETTEEEEEETT------SEEEEEETTSSSCEEEEEEC---CSSCEEEEEECTTSSEEEEEETT
T ss_pred e---CCC--CceEEEeeCCCEEEEEeCC------CceeEeeecccceeeEEecc---cccceeeeeecCCCCeeeeeecc
Confidence 1 111 1223344566777777754 34677777654433221111 11112223333344466666643
Q ss_pred CCCCcCceEEEECCCC
Q 008611 369 HAACFNDLHVLDLQTM 384 (559)
Q Consensus 369 ~~~~~~dv~~~d~~~~ 384 (559)
+.+.++|..+.
T Consensus 252 -----~~v~i~~~~~~ 262 (420)
T 4gga_A 252 -----NLVNVWPSAPG 262 (420)
T ss_dssp -----SCEEEEESSCC
T ss_pred -----ccceEEeeccc
Confidence 34667776554
No 115
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=91.86 E-value=9.9 Score=36.95 Aligned_cols=160 Identities=11% Similarity=0.092 Sum_probs=72.2
Q ss_pred EEEEEccCCCCc-ccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCC-EEEEEeccCCCCCCcceE
Q 008611 197 KMYIYGGNHNGR-YLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWEN-KLLSIAGHTKDPSEIIQV 274 (559)
Q Consensus 197 ~lyv~GG~~~~~-~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~v 274 (559)
..+++|.+..+. ..-.+|.+|..++++..+.... .....+.+..-++ .||+.+... .....-.+
T Consensus 14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~-------------~~~p~~l~~spdg~~l~~~~~~~-~~~~~v~~ 79 (361)
T 3scy_A 14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAE-------------VANPSYLIPSADGKFVYSVNEFS-KDQAAVSA 79 (361)
T ss_dssp EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEE-------------CSCCCSEEECTTSSEEEEEECCS-STTCEEEE
T ss_pred eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeeccc-------------CCCCceEEECCCCCEEEEEEccC-CCCCcEEE
Confidence 344566654322 1224566677888887765421 1111112222244 466555431 11223344
Q ss_pred EEEECCCCeEEEeccCCCCCCCccceEEEEECC-EEEEEcCcCCCCCCcCceEEEECCCCc-eE----EecCCCCCCCc-
Q 008611 275 KVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGT-SLVIFGGEDAKRSLLNDLHILDLETMT-WD----EIDAVGVPPSP- 347 (559)
Q Consensus 275 ~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~yd~~t~~-W~----~~~~~~~~p~~- 347 (559)
|.++..+++.+.+.... .....-..++. ++ .||+.+.. -+.+.+|++.+.. .. .+...+..|.+
T Consensus 80 ~~~~~~~g~~~~~~~~~--~~~~~p~~~~~-dg~~l~~~~~~------~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~ 150 (361)
T 3scy_A 80 FAFDKEKGTLHLLNTQK--TMGADPCYLTT-NGKNIVTANYS------GGSITVFPIGQDGALLPASDVIEFKGSGPDKE 150 (361)
T ss_dssp EEEETTTTEEEEEEEEE--CSSSCEEEEEE-CSSEEEEEETT------TTEEEEEEBCTTSCBCSCSEEEECCCCCSCTT
T ss_pred EEEeCCCCcEEEeeEec--cCCCCcEEEEE-CCCEEEEEECC------CCEEEEEEeCCCCcCcccceeEEccCCCCCcc
Confidence 66666667777664210 01111122333 54 56665432 2357788876432 11 11111111211
Q ss_pred ----ccccEEEEEcCC-EEEEEcCCCCCCCcCceEEEECCCC
Q 008611 348 ----RSDHAAAVHAER-YLLIFGGGSHAACFNDLHVLDLQTM 384 (559)
Q Consensus 348 ----r~~~~~~~~~~~-~l~v~GG~~~~~~~~dv~~~d~~~~ 384 (559)
...|++++..++ +||+.+.. .+.+++|++...
T Consensus 151 ~~~~~~~~~~~~spdg~~l~~~~~~-----~~~v~v~~~~~~ 187 (361)
T 3scy_A 151 RQTMPHLHCVRITPDGKYLLADDLG-----TDQIHKFNINPN 187 (361)
T ss_dssp TCSSCCEEEEEECTTSSEEEEEETT-----TTEEEEEEECTT
T ss_pred ccCCCcceEEEECCCCCEEEEEeCC-----CCEEEEEEEcCC
Confidence 122556665555 46665532 235777776543
No 116
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=91.83 E-value=5.2 Score=43.97 Aligned_cols=148 Identities=11% Similarity=0.045 Sum_probs=76.5
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe--CCEEEEEeccCCCCCCcc
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHTKDPSEII 272 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~ 272 (559)
++..+++||.+ ..+.+||+.+++....-.. ... .-.++.+ ++..++.|+.+ .
T Consensus 66 ~~~~l~~~~~d-----g~i~vw~~~~~~~~~~~~~-------------~~~--~v~~~~~s~~~~~l~~~~~d------g 119 (814)
T 3mkq_A 66 RKNWIIVGSDD-----FRIRVFNYNTGEKVVDFEA-------------HPD--YIRSIAVHPTKPYVLSGSDD------L 119 (814)
T ss_dssp GGTEEEEEETT-----SEEEEEETTTCCEEEEEEC-------------CSS--CEEEEEECSSSSEEEEEETT------S
T ss_pred CCCEEEEEeCC-----CeEEEEECCCCcEEEEEec-------------CCC--CEEEEEEeCCCCEEEEEcCC------C
Confidence 45566677632 4689999988876443221 011 1122222 56666666653 3
Q ss_pred eEEEEECCCC-eEEEeccCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCccc
Q 008611 273 QVKVFDLQTC-SWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRS 349 (559)
Q Consensus 273 ~v~~yd~~t~-~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~ 349 (559)
.+.+||+.++ .....-. ... ..-.+++.. ++.++++|+.+ ..+.+||+.+..-...... .....
T Consensus 120 ~i~vw~~~~~~~~~~~~~--~~~--~~v~~~~~~p~~~~~l~~~~~d------g~v~vwd~~~~~~~~~~~~---~~~~~ 186 (814)
T 3mkq_A 120 TVKLWNWENNWALEQTFE--GHE--HFVMCVAFNPKDPSTFASGCLD------RTVKVWSLGQSTPNFTLTT---GQERG 186 (814)
T ss_dssp EEEEEEGGGTSEEEEEEE--CCS--SCEEEEEEETTEEEEEEEEETT------SEEEEEETTCSSCSEEEEC---CCTTC
T ss_pred EEEEEECCCCceEEEEEc--CCC--CcEEEEEEEcCCCCEEEEEeCC------CeEEEEECCCCcceeEEec---CCCCC
Confidence 5888888776 3332211 011 111222333 34677777654 3588899865433221111 11122
Q ss_pred ccEEEEEc--CCEEEEEcCCCCCCCcCceEEEECCCCee
Q 008611 350 DHAAAVHA--ERYLLIFGGGSHAACFNDLHVLDLQTMEW 386 (559)
Q Consensus 350 ~~~~~~~~--~~~l~v~GG~~~~~~~~dv~~~d~~~~~W 386 (559)
..+++... ++.+++.|+.+ ..+.+||+.+..-
T Consensus 187 v~~~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~ 220 (814)
T 3mkq_A 187 VNYVDYYPLPDKPYMITASDD-----LTIKIWDYQTKSC 220 (814)
T ss_dssp CCEEEECCSTTCCEEEEECTT-----SEEEEEETTTTEE
T ss_pred EEEEEEEECCCCCEEEEEeCC-----CEEEEEECCCCcE
Confidence 23344433 55577777653 3588999877653
No 117
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=91.83 E-value=2.4 Score=40.96 Aligned_cols=156 Identities=7% Similarity=-0.019 Sum_probs=84.0
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe-CCEEEEEeccCCCCCCcce
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-ENKLLSIAGHTKDPSEIIQ 273 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~ 273 (559)
++.||+.+... ..+++||+.+++...+.... ...-++++.. ++.+|+.+.... .....
T Consensus 55 ~g~l~~~~~~~-----~~i~~~d~~~~~~~~~~~~~--------------~~~~~~i~~~~dg~l~v~~~~~~--~~~~~ 113 (333)
T 2dg1_A 55 QGQLFLLDVFE-----GNIFKINPETKEIKRPFVSH--------------KANPAAIKIHKDGRLFVCYLGDF--KSTGG 113 (333)
T ss_dssp TSCEEEEETTT-----CEEEEECTTTCCEEEEEECS--------------SSSEEEEEECTTSCEEEEECTTS--SSCCE
T ss_pred CCCEEEEECCC-----CEEEEEeCCCCcEEEEeeCC--------------CCCcceEEECCCCcEEEEeCCCC--CCCce
Confidence 56788876522 46999999999887664211 1111223322 678887754321 12357
Q ss_pred EEEEECCCCeEEEeccCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccccE
Q 008611 274 VKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHA 352 (559)
Q Consensus 274 v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~ 352 (559)
+++||+.+.....+... ......-..++.. ++.+|+.............+++||+.+.+...+... .....+
T Consensus 114 i~~~d~~~~~~~~~~~~--~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----~~~~~~ 186 (333)
T 2dg1_A 114 IFAATENGDNLQDIIED--LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN-----ISVANG 186 (333)
T ss_dssp EEEECTTSCSCEEEECS--SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE-----ESSEEE
T ss_pred EEEEeCCCCEEEEEEcc--CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC-----CCcccc
Confidence 99999998876643211 1111112222222 567887543211111235699999887777655311 111233
Q ss_pred EEEEcCC-EEEEEcCCCCCCCcCceEEEECCC
Q 008611 353 AAVHAER-YLLIFGGGSHAACFNDLHVLDLQT 383 (559)
Q Consensus 353 ~~~~~~~-~l~v~GG~~~~~~~~dv~~~d~~~ 383 (559)
+++..++ .||+.... .+.|++||+.+
T Consensus 187 i~~~~dg~~l~v~~~~-----~~~i~~~d~~~ 213 (333)
T 2dg1_A 187 IALSTDEKVLWVTETT-----ANRLHRIALED 213 (333)
T ss_dssp EEECTTSSEEEEEEGG-----GTEEEEEEECT
T ss_pred eEECCCCCEEEEEeCC-----CCeEEEEEecC
Confidence 4444444 57776432 24689999853
No 118
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=91.67 E-value=8.1 Score=35.60 Aligned_cols=146 Identities=11% Similarity=-0.002 Sum_probs=79.6
Q ss_pred ccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCCCCCcceEEEEECCC-CeEEEe
Q 008611 209 YLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQT-CSWSTL 287 (559)
Q Consensus 209 ~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t-~~W~~~ 287 (559)
.-..++++|+.+++...+.... .........-++..+++++. ..++++|+.+ .+...+
T Consensus 20 ~~~~i~~~d~~~~~~~~~~~~~--------------~~v~~~~~spdg~~l~~~~~-------~~i~~~d~~~~~~~~~~ 78 (297)
T 2ojh_A 20 MRSSIEIFNIRTRKMRVVWQTP--------------ELFEAPNWSPDGKYLLLNSE-------GLLYRLSLAGDPSPEKV 78 (297)
T ss_dssp CCEEEEEEETTTTEEEEEEEES--------------SCCEEEEECTTSSEEEEEET-------TEEEEEESSSCCSCEEC
T ss_pred cceeEEEEeCCCCceeeeccCC--------------cceEeeEECCCCCEEEEEcC-------CeEEEEeCCCCCCceEe
Confidence 3467999999998877654321 11111122225666666642 3799999998 777666
Q ss_pred ccCCCCCCCccceEEEE-ECCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccccEEEEEcCC-EEEEEc
Q 008611 288 KTYGKPPVSRGGQSVTL-VGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAER-YLLIFG 365 (559)
Q Consensus 288 ~~~g~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~-~l~v~G 365 (559)
.. .+....-..++. -+++.+++++..... ...+|.+++.+.....+... .. ...+....++ .|++.+
T Consensus 79 ~~---~~~~~~~~~~~~spdg~~l~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~----~~--~~~~~~spdg~~l~~~~ 147 (297)
T 2ojh_A 79 DT---GFATICNNDHGISPDGALYAISDKVEFG--KSAIYLLPSTGGTPRLMTKN----LP--SYWHGWSPDGKSFTYCG 147 (297)
T ss_dssp CC---TTCCCBCSCCEECTTSSEEEEEECTTTS--SCEEEEEETTCCCCEECCSS----SS--EEEEEECTTSSEEEEEE
T ss_pred cc---ccccccccceEECCCCCEEEEEEeCCCC--cceEEEEECCCCceEEeecC----CC--ccceEECCCCCEEEEEE
Confidence 42 111111112222 255666666543322 46799999888776555422 11 2333444344 455444
Q ss_pred CCCCCCCcCceEEEECCCCeeEec
Q 008611 366 GGSHAACFNDLHVLDLQTMEWSRP 389 (559)
Q Consensus 366 G~~~~~~~~dv~~~d~~~~~W~~~ 389 (559)
+..+ ...+|.+|+.+.....+
T Consensus 148 ~~~~---~~~l~~~~~~~~~~~~~ 168 (297)
T 2ojh_A 148 IRDQ---VFDIYSMDIDSGVETRL 168 (297)
T ss_dssp EETT---EEEEEEEETTTCCEEEC
T ss_pred CCCC---ceEEEEEECCCCcceEc
Confidence 4321 13688888887776655
No 119
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=91.60 E-value=4.2 Score=40.50 Aligned_cols=107 Identities=8% Similarity=0.025 Sum_probs=59.5
Q ss_pred CCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEEEECCCC
Q 008611 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETM 333 (559)
Q Consensus 255 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~ 333 (559)
++.+++.|+.++ .+.+||+.+..-...-. .....-.+++.. ++.+++.|+.+ ..+.+||+.+.
T Consensus 108 ~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~----~h~~~v~~~~~~~~~~~l~s~s~d------~~i~iwd~~~~ 171 (420)
T 3vl1_A 108 QMRRFILGTTEG------DIKVLDSNFNLQREIDQ----AHVSEITKLKFFPSGEALISSSQD------MQLKIWSVKDG 171 (420)
T ss_dssp SSCEEEEEETTS------CEEEECTTSCEEEEETT----SSSSCEEEEEECTTSSEEEEEETT------SEEEEEETTTC
T ss_pred CCCEEEEEECCC------CEEEEeCCCcceeeecc----cccCccEEEEECCCCCEEEEEeCC------CeEEEEeCCCC
Confidence 677888887643 48889988776544321 111111222222 45677777653 35889998765
Q ss_pred ceE-EecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeE
Q 008611 334 TWD-EIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWS 387 (559)
Q Consensus 334 ~W~-~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~ 387 (559)
+-. .+. .....-.+++...++.+++.|+.+ ..+.+||+.+..-.
T Consensus 172 ~~~~~~~-----~h~~~v~~~~~~~~~~~l~s~~~d-----~~v~iwd~~~~~~~ 216 (420)
T 3vl1_A 172 SNPRTLI-----GHRATVTDIAIIDRGRNVLSASLD-----GTIRLWECGTGTTI 216 (420)
T ss_dssp CCCEEEE-----CCSSCEEEEEEETTTTEEEEEETT-----SCEEEEETTTTEEE
T ss_pred cCceEEc-----CCCCcEEEEEEcCCCCEEEEEcCC-----CcEEEeECCCCcee
Confidence 422 221 111222344455455566677653 34888998876533
No 120
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=91.58 E-value=13 Score=37.60 Aligned_cols=66 Identities=21% Similarity=0.182 Sum_probs=37.8
Q ss_pred CCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCe
Q 008611 306 GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTME 385 (559)
Q Consensus 306 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~ 385 (559)
++.+++.|+.+ +.+.+||+.+.+-...-. .....-.+++...++..++.|+.+ ..+.+||+.+.+
T Consensus 279 ~~~~l~~~~~d------~~i~vwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~sg~~d-----g~i~vwd~~~~~ 343 (464)
T 3v7d_B 279 HGNIVVSGSYD------NTLIVWDVAQMKCLYILS----GHTDRIYSTIYDHERKRCISASMD-----TTIRIWDLENGE 343 (464)
T ss_dssp ETTEEEEEETT------SCEEEEETTTTEEEEEEC----CCSSCEEEEEEETTTTEEEEEETT-----SCEEEEETTTTE
T ss_pred CCCEEEEEeCC------CeEEEEECCCCcEEEEec----CCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCc
Confidence 45566666654 348899988765433221 112222344444455566777643 358899998765
Q ss_pred e
Q 008611 386 W 386 (559)
Q Consensus 386 W 386 (559)
-
T Consensus 344 ~ 344 (464)
T 3v7d_B 344 L 344 (464)
T ss_dssp E
T ss_pred E
Confidence 3
No 121
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=91.57 E-value=3.9 Score=40.26 Aligned_cols=106 Identities=14% Similarity=0.175 Sum_probs=55.8
Q ss_pred CCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCcCceEEEECCC
Q 008611 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLET 332 (559)
Q Consensus 255 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t 332 (559)
++.+++.|+.+ ..+.+||+.+.+-..... .+........... ++.+++.|+.+ ..+.+||+.+
T Consensus 111 ~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~------~~v~~~d~~~ 175 (408)
T 4a11_B 111 DTGMFTSSSFD------KTLKVWDTNTLQTADVFN---FEETVYSHHMSPVSTKHCLVAVGTRG------PKVQLCDLKS 175 (408)
T ss_dssp CTTCEEEEETT------SEEEEEETTTTEEEEEEE---CSSCEEEEEECSSCSSCCEEEEEESS------SSEEEEESSS
T ss_pred CCcEEEEEeCC------CeEEEeeCCCCccceecc---CCCceeeeEeecCCCCCcEEEEEcCC------CeEEEEeCCC
Confidence 45677777654 358899998877554432 1222111111111 23477777653 3588899876
Q ss_pred CceEEecCCCCCCCcccccEEEEEcCC-EEEEEcCCCCCCCcCceEEEECCCC
Q 008611 333 MTWDEIDAVGVPPSPRSDHAAAVHAER-YLLIFGGGSHAACFNDLHVLDLQTM 384 (559)
Q Consensus 333 ~~W~~~~~~~~~p~~r~~~~~~~~~~~-~l~v~GG~~~~~~~~dv~~~d~~~~ 384 (559)
..-...-.. ....-.+++...++ ++++.|+.+ ..+.+||+.+.
T Consensus 176 ~~~~~~~~~----~~~~v~~~~~~~~~~~ll~~~~~d-----g~i~i~d~~~~ 219 (408)
T 4a11_B 176 GSCSHILQG----HRQEILAVSWSPRYDYILATASAD-----SRVKLWDVRRA 219 (408)
T ss_dssp SCCCEEECC----CCSCEEEEEECSSCTTEEEEEETT-----SCEEEEETTCS
T ss_pred cceeeeecC----CCCcEEEEEECCCCCcEEEEEcCC-----CcEEEEECCCC
Confidence 643222111 11112233343333 367777754 34788888654
No 122
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=91.57 E-value=7 Score=42.58 Aligned_cols=180 Identities=9% Similarity=0.036 Sum_probs=90.4
Q ss_pred EECCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe--CCEEEEEeccCCCCCC
Q 008611 193 VVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHTKDPSE 270 (559)
Q Consensus 193 ~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~ 270 (559)
..|+++|.+=- ..+.....+|+.+..+..|+.+-..... . ...........+ +|+.++++..... ..
T Consensus 81 ~dG~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~lld~~~l-------~--~~~~~~~~~~~~SPDg~~la~~~~~~G-~~ 149 (710)
T 2xdw_A 81 KKGKRYFYFYN-TGLQNQRVLYVQDSLEGEARVFLDPNIL-------S--DDGTVALRGYAFSEDGEYFAYGLSASG-SD 149 (710)
T ss_dssp EETTEEEEEEE-CSSCSSCEEEEESSTTSCCEEEECGGGG-------C--TTSCEEEEEEEECTTSSEEEEEEEETT-CS
T ss_pred EECCEEEEEEE-cCCceEEEEEEEcCCCCCcEEEECHHHh-------c--cCCCEEEEEEEECCCCCEEEEEEcCCC-Cc
Confidence 34666665532 2233456788888877888766332100 0 000011122223 6666666543222 33
Q ss_pred cceEEEEECCCCeEEEeccCCCCCCCccceEEEEE-CCEEEEEcCcCCC----------CCCcCceEEEECCCCceE--E
Q 008611 271 IIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAK----------RSLLNDLHILDLETMTWD--E 337 (559)
Q Consensus 271 ~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~----------~~~~~~~~~yd~~t~~W~--~ 337 (559)
...++++|+.+++....... ... ...++.. +++.++++..+.. ......|+++++.+.... .
T Consensus 150 ~~~i~v~d~~tg~~~~~~~~----~~~-~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~ 224 (710)
T 2xdw_A 150 WVTIKFMKVDGAKELPDVLE----RVK-FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDIL 224 (710)
T ss_dssp CEEEEEEETTTTEEEEEEEE----EEC-SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEE
T ss_pred eEEEEEEECCCCCCCccccc----Ccc-cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceE
Confidence 45899999999988765321 111 1223333 4554444443322 012456999999887643 2
Q ss_pred ecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCC------C--eeEecc
Q 008611 338 IDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQT------M--EWSRPT 390 (559)
Q Consensus 338 ~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~------~--~W~~~~ 390 (559)
+... ...+.......+..++..++++........+++|++|+.+ . .+..+.
T Consensus 225 v~~~--~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~ 283 (710)
T 2xdw_A 225 CAEF--PDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLI 283 (710)
T ss_dssp EECC--TTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEE
T ss_pred Eecc--CCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEee
Confidence 2111 1123333344444455444444322222246899999876 4 577764
No 123
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=91.54 E-value=4.3 Score=44.65 Aligned_cols=147 Identities=10% Similarity=0.052 Sum_probs=76.2
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCCCCCcceE
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQV 274 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v 274 (559)
++.++++|+.+ ..+.+||+.++.....-.. +..........-++..+++||.+ ..+
T Consensus 24 ~~~~la~~~~~-----g~v~iwd~~~~~~~~~~~~-------------~~~~v~~~~~s~~~~~l~~~~~d------g~i 79 (814)
T 3mkq_A 24 TEPWVLTTLYS-----GRVEIWNYETQVEVRSIQV-------------TETPVRAGKFIARKNWIIVGSDD------FRI 79 (814)
T ss_dssp SSSEEEEEETT-----SEEEEEETTTTEEEEEEEC-------------CSSCEEEEEEEGGGTEEEEEETT------SEE
T ss_pred CCCEEEEEeCC-----CEEEEEECCCCceEEEEec-------------CCCcEEEEEEeCCCCEEEEEeCC------CeE
Confidence 45566666632 4688999888765433221 11111111122256677777763 358
Q ss_pred EEEECCCCeEEEeccCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEEEECCCC-ceEEecCCCCCCCcccccE
Q 008611 275 KVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETM-TWDEIDAVGVPPSPRSDHA 352 (559)
Q Consensus 275 ~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~-~W~~~~~~~~~p~~r~~~~ 352 (559)
.+||..+++....-.. .. ..-.+++.. ++..++.|+.+ ..+.+||+.+. .....-. .....-.+
T Consensus 80 ~vw~~~~~~~~~~~~~--~~--~~v~~~~~s~~~~~l~~~~~d------g~i~vw~~~~~~~~~~~~~----~~~~~v~~ 145 (814)
T 3mkq_A 80 RVFNYNTGEKVVDFEA--HP--DYIRSIAVHPTKPYVLSGSDD------LTVKLWNWENNWALEQTFE----GHEHFVMC 145 (814)
T ss_dssp EEEETTTCCEEEEEEC--CS--SCEEEEEECSSSSEEEEEETT------SEEEEEEGGGTSEEEEEEE----CCSSCEEE
T ss_pred EEEECCCCcEEEEEec--CC--CCEEEEEEeCCCCEEEEEcCC------CEEEEEECCCCceEEEEEc----CCCCcEEE
Confidence 8999988876543211 11 111122222 45556666643 35788888765 2222211 11122233
Q ss_pred EEEEc-CCEEEEEcCCCCCCCcCceEEEECCCC
Q 008611 353 AAVHA-ERYLLIFGGGSHAACFNDLHVLDLQTM 384 (559)
Q Consensus 353 ~~~~~-~~~l~v~GG~~~~~~~~dv~~~d~~~~ 384 (559)
++... ++.+++.|+.+ ..+.+||+.+.
T Consensus 146 ~~~~p~~~~~l~~~~~d-----g~v~vwd~~~~ 173 (814)
T 3mkq_A 146 VAFNPKDPSTFASGCLD-----RTVKVWSLGQS 173 (814)
T ss_dssp EEEETTEEEEEEEEETT-----SEEEEEETTCS
T ss_pred EEEEcCCCCEEEEEeCC-----CeEEEEECCCC
Confidence 44444 45577777654 35888988654
No 124
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=91.53 E-value=9.7 Score=36.21 Aligned_cols=161 Identities=9% Similarity=0.111 Sum_probs=77.4
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCC-CeEEEee--eccccCCCCCCCCCCCCCCccceeEEe--CC-EEEEEeccCCCC
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRS-WAWSKIQ--AKAVAESTESPSPALLTPCAGHSLIPW--EN-KLLSIAGHTKDP 268 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t-~~W~~~~--~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~-~lyv~GG~~~~~ 268 (559)
++.||+.+.. -..+.+||+.+ ++...+. ... .+... ....+.+ ++ .+|+.+..
T Consensus 140 g~~l~~~~~~-----~~~v~~~d~~~~~~~~~~~~~~~~-----------~~~~~-~~~~~~~~pdg~~l~~~~~~---- 198 (343)
T 1ri6_A 140 NRTLWVPALK-----QDRICLFTVSDDGHLVAQDPAEVT-----------TVEGA-GPRHMVFHPNEQYAYCVNEL---- 198 (343)
T ss_dssp SSEEEEEEGG-----GTEEEEEEECTTSCEEEEEEEEEE-----------CSTTC-CEEEEEECTTSSEEEEEETT----
T ss_pred CCEEEEecCC-----CCEEEEEEecCCCceeeecccccc-----------cCCCC-CcceEEECCCCCEEEEEeCC----
Confidence 3467776521 24689999987 7666543 211 01111 1112223 44 56666533
Q ss_pred CCcceEEEEECC--CCeEEEeccCCCCCCC----ccceEEEEE--CCEEEEEcCcCCCCCCcCceEEEECC--CCceEEe
Q 008611 269 SEIIQVKVFDLQ--TCSWSTLKTYGKPPVS----RGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLE--TMTWDEI 338 (559)
Q Consensus 269 ~~~~~v~~yd~~--t~~W~~~~~~g~~p~~----r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~--t~~W~~~ 338 (559)
.+.+.+||+. +..+..+......|.. .....++.. +..||+.+.. .+.+.+||+. +..+..+
T Consensus 199 --~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~------~~~i~v~d~~~~~~~~~~~ 270 (343)
T 1ri6_A 199 --NSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRT------ASLITVFSVSEDGSVLSKE 270 (343)
T ss_dssp --TTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETT------TTEEEEEEECTTSCCEEEE
T ss_pred --CCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecC------CCEEEEEEEcCCCCceEEe
Confidence 2468888884 4555433221112221 111123332 2367765532 2457888887 5566655
Q ss_pred cCCCCCCCcccccEEEEEcC-CEEEEEcCCCCCCCcCceEEEECCCCeeEecc
Q 008611 339 DAVGVPPSPRSDHAAAVHAE-RYLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (559)
Q Consensus 339 ~~~~~~p~~r~~~~~~~~~~-~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~~ 390 (559)
... +....-..+++..+ +.||+.++.+ + .-.+|.+|+.+..+..+.
T Consensus 271 ~~~---~~~~~~~~~~~s~dg~~l~~~~~~~-~--~v~v~~~d~~~g~~~~~~ 317 (343)
T 1ri6_A 271 GFQ---PTETQPRGFNVDHSGKYLIAAGQKS-H--HISVYEIVGEQGLLHEKG 317 (343)
T ss_dssp EEE---ECSSSCCCEEECTTSSEEEEECTTT-C--EEEEEEEETTTTEEEEEE
T ss_pred eee---cCCCccceEEECCCCCEEEEecCCC-C--eEEEEEEcCCCceeeEcc
Confidence 422 11111223444444 4455554322 1 112555588888887763
No 125
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=91.52 E-value=3.1 Score=41.03 Aligned_cols=108 Identities=14% Similarity=0.140 Sum_probs=55.9
Q ss_pred CCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCcCceEEEECCC
Q 008611 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLET 332 (559)
Q Consensus 255 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t 332 (559)
++..++.|+.+. .+.++|+.+.+-...-. .... .-.+++.. ++.+++.||.++ .+.+||+.+
T Consensus 150 dg~~l~sgs~dg------~v~iwd~~~~~~~~~~~---~h~~-~v~~v~~s~~~~~~~~s~~~dg------~v~~wd~~~ 213 (357)
T 4g56_B 150 DGTQAVSGGKDF------SVKVWDLSQKAVLKSYN---AHSS-EVNCVAACPGKDTIFLSCGEDG------RILLWDTRK 213 (357)
T ss_dssp SSSEEEEEETTS------CEEEEETTTTEEEEEEC---CCSS-CEEEEEECTTCSSCEEEEETTS------CEEECCTTS
T ss_pred CCCEEEEEeCCC------eEEEEECCCCcEEEEEc---CCCC-CEEEEEEccCCCceeeeeccCC------ceEEEECCC
Confidence 677778887654 48889998876443321 1111 11122222 235777777543 377888876
Q ss_pred CceEEecCCCCCCCcccccEEEEEc-CCEEEEEcCCCCCCCcCceEEEECCCCe
Q 008611 333 MTWDEIDAVGVPPSPRSDHAAAVHA-ERYLLIFGGGSHAACFNDLHVLDLQTME 385 (559)
Q Consensus 333 ~~W~~~~~~~~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~dv~~~d~~~~~ 385 (559)
.+-...... ......-.+++... ++.+++.|+.+ ..|.+||+.+..
T Consensus 214 ~~~~~~~~~--~~~~~~v~~v~~sp~~~~~la~g~~d-----~~i~~wd~~~~~ 260 (357)
T 4g56_B 214 PKPATRIDF--CASDTIPTSVTWHPEKDDTFACGDET-----GNVSLVNIKNPD 260 (357)
T ss_dssp SSCBCBCCC--TTCCSCEEEEEECTTSTTEEEEEESS-----SCEEEEESSCGG
T ss_pred Cceeeeeee--ccccccccchhhhhcccceEEEeecc-----cceeEEECCCCc
Confidence 543222111 01111112233332 34577777643 347889987653
No 126
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=91.50 E-value=3.2 Score=40.88 Aligned_cols=152 Identities=12% Similarity=0.150 Sum_probs=75.5
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe--CCEEEEEeccCCCCCCcc
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHTKDPSEII 272 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~ 272 (559)
++.+++.|+.+ ..+.+||+.+..-...-... ........... ++.+++.|+.++
T Consensus 111 ~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~------ 166 (408)
T 4a11_B 111 DTGMFTSSSFD-----KTLKVWDTNTLQTADVFNFE-------------ETVYSHHMSPVSTKHCLVAVGTRGP------ 166 (408)
T ss_dssp CTTCEEEEETT-----SEEEEEETTTTEEEEEEECS-------------SCEEEEEECSSCSSCCEEEEEESSS------
T ss_pred CCcEEEEEeCC-----CeEEEeeCCCCccceeccCC-------------CceeeeEeecCCCCCcEEEEEcCCC------
Confidence 44567777633 46889999887655443211 11111111111 345777776643
Q ss_pred eEEEEECCCCeEEEeccCCCCCCCccceEEEEE--C-CEEEEEcCcCCCCCCcCceEEEECCCCc--eEEecCCC-----
Q 008611 273 QVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--G-TSLVIFGGEDAKRSLLNDLHILDLETMT--WDEIDAVG----- 342 (559)
Q Consensus 273 ~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~-~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~----- 342 (559)
.+..||+.+..-...- ........+..+ + ..+++.|+.++ .+.+||+.+.. ...+....
T Consensus 167 ~v~~~d~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~ll~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~~~~~ 235 (408)
T 4a11_B 167 KVQLCDLKSGSCSHIL-----QGHRQEILAVSWSPRYDYILATASADS------RVKLWDVRRASGCLITLDQHNGKKSQ 235 (408)
T ss_dssp SEEEEESSSSCCCEEE-----CCCCSCEEEEEECSSCTTEEEEEETTS------CEEEEETTCSSCCSEECCTTTTCSCC
T ss_pred eEEEEeCCCcceeeee-----cCCCCcEEEEEECCCCCcEEEEEcCCC------cEEEEECCCCCcccccccccccccce
Confidence 4888998876532221 111111222222 2 24777777543 47888886543 22221100
Q ss_pred C-----CCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCee
Q 008611 343 V-----PPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEW 386 (559)
Q Consensus 343 ~-----~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W 386 (559)
. ......-.+++...++..++.|+.+ ..+.+||+.+..-
T Consensus 236 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~ 279 (408)
T 4a11_B 236 AVESANTAHNGKVNGLCFTSDGLHLLTVGTD-----NRMRLWNSSNGEN 279 (408)
T ss_dssp CTTTSSCSCSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTCCB
T ss_pred eeccccccccCceeEEEEcCCCCEEEEecCC-----CeEEEEECCCCcc
Confidence 0 0111112234444455566666643 3588999887653
No 127
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=91.42 E-value=10 Score=41.19 Aligned_cols=123 Identities=16% Similarity=0.114 Sum_probs=68.6
Q ss_pred eEEeCCEEEEEeccCCCCCCcceEEEEECCCCe--EEEeccCCCC--CC---CccceEEEEECCEEEEEcCcCCCCCCcC
Q 008611 251 LIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCS--WSTLKTYGKP--PV---SRGGQSVTLVGTSLVIFGGEDAKRSLLN 323 (559)
Q Consensus 251 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~g~~--p~---~r~~~~~~~~~~~lyv~GG~~~~~~~~~ 323 (559)
-++.++.||+... ...++.+|..+++ |+.-...... +. .....+.++.+++||+... -.
T Consensus 73 P~v~~g~vyv~~~-------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~-------dg 138 (677)
T 1kb0_A 73 PVVVDGIMYVSAS-------WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW-------DG 138 (677)
T ss_dssp CEEETTEEEEECG-------GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT-------TS
T ss_pred CEEECCEEEEECC-------CCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC-------CC
Confidence 4567899999765 2469999998875 8765421100 00 0112234556788887642 24
Q ss_pred ceEEEECCCC--ceEEecCCCCCCC-cccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCC--eeEec
Q 008611 324 DLHILDLETM--TWDEIDAVGVPPS-PRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTM--EWSRP 389 (559)
Q Consensus 324 ~~~~yd~~t~--~W~~~~~~~~~p~-~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~--~W~~~ 389 (559)
.++.+|..|. .|+.-... ..+. .....+.++ .++.||+..+......-..|+.||..+. .|+.-
T Consensus 139 ~l~alD~~tG~~~W~~~~~~-~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~ 207 (677)
T 1kb0_A 139 RLIALDAATGKEVWHQNTFE-GQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWF 207 (677)
T ss_dssp EEEEEETTTCCEEEEEETTT-TCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred EEEEEECCCCCEEeeecCCc-CcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEec
Confidence 5999999776 48765320 1111 111222233 3665655433222122356999999876 48764
No 128
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=91.31 E-value=9.3 Score=35.60 Aligned_cols=150 Identities=9% Similarity=-0.010 Sum_probs=82.3
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe-CCEEEEEeccCCCCCCcce
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-ENKLLSIAGHTKDPSEIIQ 273 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~ 273 (559)
++.||+.... .+.+.+||+. ++........ ....-++++.. ++.+|+.... ...
T Consensus 30 ~g~l~v~~~~-----~~~v~~~~~~-~~~~~~~~~~-------------~~~~~~~i~~~~~g~l~v~~~~------~~~ 84 (300)
T 2qc5_A 30 DGKVWFTQHK-----ANKISSLDQS-GRIKEFEVPT-------------PDAKVMCLIVSSLGDIWFTENG------ANK 84 (300)
T ss_dssp TSCEEEEETT-----TTEEEEECTT-SCEEEEECSS-------------TTCCEEEEEECTTSCEEEEETT------TTE
T ss_pred CCCEEEEcCC-----CCeEEEECCC-CceEEEECCC-------------CCCcceeEEECCCCCEEEEecC------CCe
Confidence 5778887531 2468899988 7766543210 01112233332 5778886532 246
Q ss_pred EEEEECCCCeEEEeccCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccccE
Q 008611 274 VKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHA 352 (559)
Q Consensus 274 v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~ 352 (559)
+.+||+. +++..+...+ ....-+.++.. ++.+|+.... .+.+++||+. .+........ ....-++
T Consensus 85 v~~~d~~-g~~~~~~~~~---~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~~-g~~~~~~~~~---~~~~~~~ 150 (300)
T 2qc5_A 85 IGKLSKK-GGFTEYPLPQ---PDSGPYGITEGLNGDIWFTQLN------GDRIGKLTAD-GTIYEYDLPN---KGSYPAF 150 (300)
T ss_dssp EEEECTT-SCEEEEECSS---TTCCEEEEEECSTTCEEEEETT------TTEEEEECTT-SCEEEEECSS---TTCCEEE
T ss_pred EEEECCC-CCeEEecCCC---CCCCCccceECCCCCEEEEccC------CCeEEEECCC-CCEEEccCCC---CCCCcee
Confidence 8999988 7776654211 11222333333 5688876532 2458899987 6665543211 1122234
Q ss_pred EEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEec
Q 008611 353 AAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRP 389 (559)
Q Consensus 353 ~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~ 389 (559)
+++..++.||+.... .+.+++||+ +.+...+
T Consensus 151 i~~d~~g~l~v~~~~-----~~~i~~~~~-~g~~~~~ 181 (300)
T 2qc5_A 151 ITLGSDNALWFTENQ-----NNSIGRITN-TGKLEEY 181 (300)
T ss_dssp EEECTTSSEEEEETT-----TTEEEEECT-TCCEEEE
T ss_pred EEECCCCCEEEEecC-----CCeEEEECC-CCcEEEe
Confidence 444445568876532 245899998 5566554
No 129
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=91.29 E-value=7.8 Score=36.81 Aligned_cols=92 Identities=13% Similarity=0.018 Sum_probs=48.9
Q ss_pred ceEEEECCCCceEEecCCCCCCCcccccEEEEEcCC-EEEEEcCCCCCCCcCceEEEECCCCeeEeccCCCCCCCCcccc
Q 008611 324 DLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAER-YLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGH 402 (559)
Q Consensus 324 ~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~-~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~~~~~~~p~~R~~h 402 (559)
.+++||+.+.+-..+... +....-+++++..++ .+|+. .+.+++||+.+.+-......+ ....
T Consensus 220 ~v~~~d~~~~~~~~~~~~---~~~~~~~~~~~s~dg~~l~~~--------~~~v~~~d~~~~~~~~~~~~~-----~~~~ 283 (337)
T 1pby_B 220 GLLTMDLETGEMAMREVR---IMDVFYFSTAVNPAKTRAFGA--------YNVLESFDLEKNASIKRVPLP-----HSYY 283 (337)
T ss_dssp EEEEEETTTCCEEEEEEE---ECSSCEEEEEECTTSSEEEEE--------ESEEEEEETTTTEEEEEEECS-----SCCC
T ss_pred ceEEEeCCCCCceEeecC---CCCCceeeEEECCCCCEEEEe--------CCeEEEEECCCCcCcceecCC-----Ccee
Confidence 588999988876533221 122222334444444 45544 156999999887543321111 1122
Q ss_pred EEEEECCceecceeeeeeccCCCcEEEEEcCcCCCCcccEEEEeCCCcc
Q 008611 403 AGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSHKS 451 (559)
Q Consensus 403 s~~~~~~~~~iG~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~~d~~~~~ 451 (559)
+++...+ +..||+. +. .+.|.+||+.+..
T Consensus 284 ~~~~s~d---------------g~~l~~~-~~----~~~i~v~d~~~~~ 312 (337)
T 1pby_B 284 SVNVSTD---------------GSTVWLG-GA----LGDLAAYDAETLE 312 (337)
T ss_dssp EEEECTT---------------SCEEEEE-SB----SSEEEEEETTTCC
T ss_pred eEEECCC---------------CCEEEEE-cC----CCcEEEEECcCCc
Confidence 3332221 3356654 43 3579999988764
No 130
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=91.27 E-value=9.4 Score=35.57 Aligned_cols=149 Identities=7% Similarity=-0.034 Sum_probs=82.5
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEE-eCCEEEEEeccCCCCCCcce
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIP-WENKLLSIAGHTKDPSEIIQ 273 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~ 273 (559)
++.||+.... ...+.+||+. +.+....... ....-++++. -++.+|+.... ...
T Consensus 25 ~g~l~v~~~~-----~~~v~~~d~~-~~~~~~~~~~-------------~~~~~~~i~~~~~g~l~v~~~~------~~~ 79 (299)
T 2z2n_A 25 KGKVWITQHK-----ANMISCINLD-GKITEYPLPT-------------PDAKVMCLTISSDGEVWFTENA------ANK 79 (299)
T ss_dssp TSCEEEEETT-----TTEEEEECTT-CCEEEEECSS-------------TTCCEEEEEECTTSCEEEEETT------TTE
T ss_pred CCCEEEEecC-----CCcEEEEcCC-CCeEEecCCc-------------ccCceeeEEECCCCCEEEeCCC------CCe
Confidence 5678886431 1468999988 7776654211 1111223333 25788887532 235
Q ss_pred EEEEECCCCeEEEeccCCCCC-CCccceEEEEE-CCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCccccc
Q 008611 274 VKVFDLQTCSWSTLKTYGKPP-VSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDH 351 (559)
Q Consensus 274 v~~yd~~t~~W~~~~~~g~~p-~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~ 351 (559)
+.+||+. .+...+.. | ....-++++.. ++.||+.... .+.+++||+ +.......... ....-+
T Consensus 80 i~~~~~~-g~~~~~~~----~~~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~d~-~g~~~~~~~~~---~~~~~~ 144 (299)
T 2z2n_A 80 IGRITKK-GIIKEYTL----PNPDSAPYGITEGPNGDIWFTEMN------GNRIGRITD-DGKIREYELPN---KGSYPS 144 (299)
T ss_dssp EEEECTT-SCEEEEEC----SSTTCCEEEEEECTTSCEEEEETT------TTEEEEECT-TCCEEEEECSS---TTCCEE
T ss_pred EEEECCC-CcEEEEeC----CCcCCCceeeEECCCCCEEEEecC------CceEEEECC-CCCEEEecCCC---CCCCCc
Confidence 8899986 55655542 2 11222334333 4688886532 245889998 66666553211 122234
Q ss_pred EEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEec
Q 008611 352 AAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRP 389 (559)
Q Consensus 352 ~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~ 389 (559)
+++...++.+|+.... .+.+++||+ +.+...+
T Consensus 145 ~i~~~~~g~l~v~~~~-----~~~i~~~~~-~g~~~~~ 176 (299)
T 2z2n_A 145 FITLGSDNALWFTENQ-----NNAIGRITE-SGDITEF 176 (299)
T ss_dssp EEEECTTSCEEEEETT-----TTEEEEECT-TCCEEEE
T ss_pred eEEEcCCCCEEEEeCC-----CCEEEEEcC-CCcEEEe
Confidence 4555446668876532 246899999 6666654
No 131
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=91.23 E-value=1.2 Score=43.97 Aligned_cols=150 Identities=13% Similarity=0.077 Sum_probs=75.0
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe--C-CEEEEEeccCCCCCCc
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--E-NKLLSIAGHTKDPSEI 271 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~-~~lyv~GG~~~~~~~~ 271 (559)
++..++.|+.+ ..+.++|+.+++-...-.. ... .-.++.+ + +.+++.||.+.
T Consensus 150 dg~~l~sgs~d-----g~v~iwd~~~~~~~~~~~~-------------h~~--~v~~v~~s~~~~~~~~s~~~dg----- 204 (357)
T 4g56_B 150 DGTQAVSGGKD-----FSVKVWDLSQKAVLKSYNA-------------HSS--EVNCVAACPGKDTIFLSCGEDG----- 204 (357)
T ss_dssp SSSEEEEEETT-----SCEEEEETTTTEEEEEECC-------------CSS--CEEEEEECTTCSSCEEEEETTS-----
T ss_pred CCCEEEEEeCC-----CeEEEEECCCCcEEEEEcC-------------CCC--CEEEEEEccCCCceeeeeccCC-----
Confidence 45677777743 3588899888764432110 111 1112222 3 35777777643
Q ss_pred ceEEEEECCCCeEEEeccCCCCCCCccceEEEEE---CCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcc
Q 008611 272 IQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV---GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPR 348 (559)
Q Consensus 272 ~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r 348 (559)
.+.++|+.+.+-..... .........++.+ ++.+++.|+.++ .+.+||+.+.+-...-. ....
T Consensus 205 -~v~~wd~~~~~~~~~~~---~~~~~~~v~~v~~sp~~~~~la~g~~d~------~i~~wd~~~~~~~~~~~----~~~~ 270 (357)
T 4g56_B 205 -RILLWDTRKPKPATRID---FCASDTIPTSVTWHPEKDDTFACGDETG------NVSLVNIKNPDSAQTSA----VHSQ 270 (357)
T ss_dssp -CEEECCTTSSSCBCBCC---CTTCCSCEEEEEECTTSTTEEEEEESSS------CEEEEESSCGGGCEEEC----CCSS
T ss_pred -ceEEEECCCCceeeeee---eccccccccchhhhhcccceEEEeeccc------ceeEEECCCCcEeEEEe----ccce
Confidence 47788887765322211 1111112222233 356777777543 47888987654221111 0111
Q ss_pred cccEEEEEc-CCEEEEEcCCCCCCCcCceEEEECCCCeeEe
Q 008611 349 SDHAAAVHA-ERYLLIFGGGSHAACFNDLHVLDLQTMEWSR 388 (559)
Q Consensus 349 ~~~~~~~~~-~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~ 388 (559)
.-.++++.. +..+++.|+.+ ..|.+||+.+.+...
T Consensus 271 ~v~~l~~sp~~~~~lasgs~D-----~~i~iwd~~~~~~~~ 306 (357)
T 4g56_B 271 NITGLAYSYHSSPFLASISED-----CTVAVLDADFSEVFR 306 (357)
T ss_dssp CEEEEEECSSSSCCEEEEETT-----SCEEEECTTSCEEEE
T ss_pred eEEEEEEcCCCCCEEEEEeCC-----CEEEEEECCCCcEeE
Confidence 112333322 33466666643 348889988876543
No 132
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=91.22 E-value=11 Score=36.35 Aligned_cols=147 Identities=11% Similarity=-0.048 Sum_probs=77.5
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCCCCCcceE
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQV 274 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v 274 (559)
++.+|+++.. ...+++||+.++....+.. + ......+..-++.+|+... ..+
T Consensus 60 ~~~l~~~d~~-----~~~i~~~d~~~~~~~~~~~--------------~-~~v~~i~~~~dg~l~v~~~--------~gl 111 (326)
T 2ghs_A 60 SGTAWWFNIL-----ERELHELHLASGRKTVHAL--------------P-FMGSALAKISDSKQLIASD--------DGL 111 (326)
T ss_dssp TTEEEEEEGG-----GTEEEEEETTTTEEEEEEC--------------S-SCEEEEEEEETTEEEEEET--------TEE
T ss_pred CCEEEEEECC-----CCEEEEEECCCCcEEEEEC--------------C-CcceEEEEeCCCeEEEEEC--------CCE
Confidence 3678888642 2469999999887665421 1 1111122223788877542 249
Q ss_pred EEEECCCCeEEEeccCCC-CCCCccceEEEE-ECCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccccE
Q 008611 275 KVFDLQTCSWSTLKTYGK-PPVSRGGQSVTL-VGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHA 352 (559)
Q Consensus 275 ~~yd~~t~~W~~~~~~g~-~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~ 352 (559)
++||+.+++...+..... .+..+. ..++. -++++|+.............|++|+ +.+...+... .....+
T Consensus 112 ~~~d~~~g~~~~~~~~~~~~~~~~~-~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~-----~~~~~~ 183 (326)
T 2ghs_A 112 FLRDTATGVLTLHAELESDLPGNRS-NDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFAD-----ISIPNS 183 (326)
T ss_dssp EEEETTTCCEEEEECSSTTCTTEEE-EEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEE-----ESSEEE
T ss_pred EEEECCCCcEEEEeeCCCCCCCCCC-CCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCC-----CcccCC
Confidence 999999999887753211 111111 12222 2457776432111111245799999 4666554211 011123
Q ss_pred EEEEcCC-EEEEEcCCCCCCCcCceEEEECC
Q 008611 353 AAVHAER-YLLIFGGGSHAACFNDLHVLDLQ 382 (559)
Q Consensus 353 ~~~~~~~-~l~v~GG~~~~~~~~dv~~~d~~ 382 (559)
+++..++ .||+.... .+.|++||+.
T Consensus 184 i~~s~dg~~lyv~~~~-----~~~I~~~d~~ 209 (326)
T 2ghs_A 184 ICFSPDGTTGYFVDTK-----VNRLMRVPLD 209 (326)
T ss_dssp EEECTTSCEEEEEETT-----TCEEEEEEBC
T ss_pred eEEcCCCCEEEEEECC-----CCEEEEEEcc
Confidence 4444344 57776432 2568999975
No 133
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=91.13 E-value=9.2 Score=35.20 Aligned_cols=152 Identities=11% Similarity=-0.017 Sum_probs=81.2
Q ss_pred eEEEE-CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe-CCEEEEEeccCCC
Q 008611 190 GAAVV-QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-ENKLLSIAGHTKD 267 (559)
Q Consensus 190 ~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~ 267 (559)
+++.. ++.||+... .+.+++||+.+.....+... ....-++++.. ++.||+....
T Consensus 71 ~i~~~~~g~l~v~~~------~~~i~~~d~~~~~~~~~~~~--------------~~~~p~~i~~~~~g~l~v~~~~--- 127 (270)
T 1rwi_B 71 GLAVDGAGTVYVTDF------NNRVVTLAAGSNNQTVLPFD--------------GLNYPEGLAVDTQGAVYVADRG--- 127 (270)
T ss_dssp CEEECTTCCEEEEET------TTEEEEECTTCSCCEECCCC--------------SCSSEEEEEECTTCCEEEEEGG---
T ss_pred eeEECCCCCEEEEcC------CCEEEEEeCCCceEeeeecC--------------CcCCCcceEECCCCCEEEEECC---
Confidence 34443 467888754 14689999887655443211 00111233333 5788887543
Q ss_pred CCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCC
Q 008611 268 PSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPS 346 (559)
Q Consensus 268 ~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~ 346 (559)
...+.+|+..+......... ... .-..++.. +++||+.... .+.+.+||+.+..-...... .
T Consensus 128 ---~~~i~~~~~~~~~~~~~~~~-~~~---~p~~i~~~~~g~l~v~~~~------~~~i~~~~~~~~~~~~~~~~----~ 190 (270)
T 1rwi_B 128 ---NNRVVKLAAGSKTQTVLPFT-GLN---DPDGVAVDNSGNVYVTDTD------NNRVVKLEAESNNQVVLPFT----D 190 (270)
T ss_dssp ---GTEEEEECTTCCSCEECCCC-SCC---SCCCEEECTTCCEEEEEGG------GTEEEEECTTTCCEEECCCS----S
T ss_pred ---CCEEEEEECCCceeEeeccc-cCC---CceeEEEeCCCCEEEEECC------CCEEEEEecCCCceEeeccc----C
Confidence 24688888776654433211 111 11223333 4678887542 24689999887654433211 1
Q ss_pred cccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCee
Q 008611 347 PRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEW 386 (559)
Q Consensus 347 ~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W 386 (559)
...-.++++..++.||+..... +.|.+||+.+..-
T Consensus 191 ~~~p~~i~~d~~g~l~v~~~~~-----~~v~~~~~~~~~~ 225 (270)
T 1rwi_B 191 ITAPWGIAVDEAGTVYVTEHNT-----NQVVKLLAGSTTS 225 (270)
T ss_dssp CCSEEEEEECTTCCEEEEETTT-----SCEEEECTTCSCC
T ss_pred CCCceEEEECCCCCEEEEECCC-----CcEEEEcCCCCcc
Confidence 1222344454455788876432 4588999876543
No 134
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=91.12 E-value=11 Score=35.92 Aligned_cols=148 Identities=12% Similarity=0.106 Sum_probs=72.3
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCCCCCcceE
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQV 274 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v 274 (559)
++.+++.|+.+ ..+..++............. ............+..++.|+.+. .+
T Consensus 97 dg~~l~s~~~d-----~~i~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~l~s~s~d~------~~ 152 (340)
T 4aow_A 97 DGQFALSGSWD-----GTLRLWDLTTGTTTRRFVGH-------------TKDVLSVAFSSDNRQIVSGSRDK------TI 152 (340)
T ss_dssp TSSEEEEEETT-----SEEEEEETTTTEEEEEEECC-------------SSCEEEEEECTTSSCEEEEETTS------CE
T ss_pred CCCEEEEEccc-----ccceEEeecccceeeeecCC-------------CCceeEEEEeecCccceeecCCC------eE
Confidence 45666677643 24677777776655443321 11111112222456666776543 36
Q ss_pred EEEECCCCeEEEeccCCCCCCCccceEEEEE----CCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccc
Q 008611 275 KVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV----GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSD 350 (559)
Q Consensus 275 ~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~ 350 (559)
..+|+....-...... ..........+ .+.+++.||.+ ..+.+||+.+.+....-.. ....-
T Consensus 153 ~~~d~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~s~~~d------~~i~i~d~~~~~~~~~~~~----h~~~v 218 (340)
T 4aow_A 153 KLWNTLGVCKYTVQDE----SHSEWVSCVRFSPNSSNPIIVSCGWD------KLVKVWNLANCKLKTNHIG----HTGYL 218 (340)
T ss_dssp EEECTTSCEEEEECSS----SCSSCEEEEEECSCSSSCEEEEEETT------SCEEEEETTTTEEEEEECC----CSSCE
T ss_pred EEEEeCCCceEEEEec----cccCcccceEEccCCCCcEEEEEcCC------CEEEEEECCCCceeeEecC----CCCcE
Confidence 6777765543333211 11111122222 23466666653 2478889887655433211 11112
Q ss_pred cEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCe
Q 008611 351 HAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTME 385 (559)
Q Consensus 351 ~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~ 385 (559)
.++++..++.+++.|+.+ ..+.+||+.+..
T Consensus 219 ~~~~~s~~~~~l~s~s~D-----g~i~iwd~~~~~ 248 (340)
T 4aow_A 219 NTVTVSPDGSLCASGGKD-----GQAMLWDLNEGK 248 (340)
T ss_dssp EEEEECTTSSEEEEEETT-----CEEEEEETTTTE
T ss_pred EEEEECCCCCEEEEEeCC-----CeEEEEEeccCc
Confidence 234444455577777654 346667766543
No 135
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=91.10 E-value=9.5 Score=38.19 Aligned_cols=147 Identities=12% Similarity=0.116 Sum_probs=76.4
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe--CCEEEEEeccCCCCCCcc
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHTKDPSEII 272 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~ 272 (559)
++.+++.||.+ ..+.+||+.++.....-. + ... .-.++.+ ++.+++.||.+..
T Consensus 119 ~~~~l~s~s~D-----g~i~vwd~~~~~~~~~l~-~------------h~~--~V~~v~~~~~~~~l~sgs~D~~----- 173 (410)
T 1vyh_C 119 VFSVMVSASED-----ATIKVWDYETGDFERTLK-G------------HTD--SVQDISFDHSGKLLASCSADMT----- 173 (410)
T ss_dssp SSSEEEEEESS-----SCEEEEETTTCCCCEEEC-C------------CSS--CEEEEEECTTSSEEEEEETTSC-----
T ss_pred CCCEEEEEeCC-----CeEEEEECCCCcEEEEEe-c------------cCC--cEEEEEEcCCCCEEEEEeCCCe-----
Confidence 34567777743 358888988765432211 0 111 1122222 5678888887543
Q ss_pred eEEEEECCCCeEEEeccCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccc
Q 008611 273 QVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSD 350 (559)
Q Consensus 273 ~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~ 350 (559)
+.+||+.+.+-... +..-.....++.+ ++..++.|+.+ ..+.+||+.+..-...-. + ....-
T Consensus 174 -i~iwd~~~~~~~~~-----~~~h~~~V~~v~~~p~~~~l~s~s~D------~~i~~wd~~~~~~~~~~~-~---h~~~v 237 (410)
T 1vyh_C 174 -IKLWDFQGFECIRT-----MHGHDHNVSSVSIMPNGDHIVSASRD------KTIKMWEVQTGYCVKTFT-G---HREWV 237 (410)
T ss_dssp -CCEEETTSSCEEEC-----CCCCSSCEEEEEECSSSSEEEEEETT------SEEEEEETTTCCEEEEEE-C---CSSCE
T ss_pred -EEEEeCCCCceeEE-----EcCCCCCEEEEEEeCCCCEEEEEeCC------CeEEEEECCCCcEEEEEe-C---CCccE
Confidence 66788876653222 1111111222222 45666777754 358889988775432211 1 11111
Q ss_pred cEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeE
Q 008611 351 HAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWS 387 (559)
Q Consensus 351 ~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~ 387 (559)
.++....++.+++.|+.+ ..+.+||+.+....
T Consensus 238 ~~~~~~~~g~~l~s~s~D-----~~v~vwd~~~~~~~ 269 (410)
T 1vyh_C 238 RMVRPNQDGTLIASCSND-----QTVRVWVVATKECK 269 (410)
T ss_dssp EEEEECTTSSEEEEEETT-----SCEEEEETTTCCEE
T ss_pred EEEEECCCCCEEEEEcCC-----CeEEEEECCCCcee
Confidence 223333455577777754 35788888776543
No 136
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=91.02 E-value=1.6 Score=42.79 Aligned_cols=109 Identities=11% Similarity=0.122 Sum_probs=59.4
Q ss_pred CCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCcCceEEEECCC
Q 008611 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLET 332 (559)
Q Consensus 255 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t 332 (559)
++.+++.||.+. .+.++|+.+..|........ .. .....++.+ ++.+++.|+.++ .+.++|..+
T Consensus 27 ~g~~las~~~D~------~i~iw~~~~~~~~~~~~~~~-~h-~~~v~~~~~sp~g~~l~s~s~D~------~v~iw~~~~ 92 (345)
T 3fm0_A 27 AGTLLASCGGDR------RIRIWGTEGDSWICKSVLSE-GH-QRTVRKVAWSPCGNYLASASFDA------TTCIWKKNQ 92 (345)
T ss_dssp TSSCEEEEETTS------CEEEEEEETTEEEEEEEECS-SC-SSCEEEEEECTTSSEEEEEETTS------CEEEEEECC
T ss_pred CCCEEEEEcCCC------eEEEEEcCCCcceeeeeecc-cc-CCcEEEEEECCCCCEEEEEECCC------cEEEEEccC
Confidence 677888888754 47888888888764321100 01 111222222 457777777653 366777777
Q ss_pred CceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCC
Q 008611 333 MTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTM 384 (559)
Q Consensus 333 ~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~ 384 (559)
..+..+.... .....-.+++...++.+++.|+.+ ..+.+||+.+.
T Consensus 93 ~~~~~~~~~~--~h~~~v~~v~~sp~~~~l~s~s~D-----~~v~iwd~~~~ 137 (345)
T 3fm0_A 93 DDFECVTTLE--GHENEVKSVAWAPSGNLLATCSRD-----KSVWVWEVDEE 137 (345)
T ss_dssp C-EEEEEEEC--CCSSCEEEEEECTTSSEEEEEETT-----SCEEEEEECTT
T ss_pred CCeEEEEEcc--CCCCCceEEEEeCCCCEEEEEECC-----CeEEEEECCCC
Confidence 7665543221 111122334444455577777754 34778887654
No 137
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=90.98 E-value=3.9 Score=43.97 Aligned_cols=155 Identities=14% Similarity=0.015 Sum_probs=83.3
Q ss_pred cCcEEEEEcCC------CeEEEee-eccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCCC--CCcceEEEEECC
Q 008611 210 LSDMHILDLRS------WAWSKIQ-AKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDP--SEIIQVKVFDLQ 280 (559)
Q Consensus 210 ~~~v~~yd~~t------~~W~~~~-~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~--~~~~~v~~yd~~ 280 (559)
..+++++|+.+ .....+. .. ..........-+|+.+++....... -....++++|+.
T Consensus 160 ~~~i~~~~~~~~~~~~~~~~~~l~~~~--------------~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~ 225 (662)
T 3azo_A 160 RRFLAAVPLDGSAAADRSAVRELSDDA--------------HRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVT 225 (662)
T ss_dssp EEEEEEEETTSTTTTCGGGSEESSCSC--------------SSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEEC
T ss_pred eeEEEEEECCCCccccCCceeEEEecC--------------CCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEEC
Confidence 46899999988 6655552 10 1111111222256555555433221 124689999999
Q ss_pred -CC---eEEEeccCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCC-CCCccc---cc
Q 008611 281 -TC---SWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGV-PPSPRS---DH 351 (559)
Q Consensus 281 -t~---~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~-~p~~r~---~~ 351 (559)
++ ....+... . .......+.. ++++|+.+..++ ...||.+|+.+..+..+..... .-.+.. ..
T Consensus 226 ~~g~~~~~~~l~~~---~-~~~~~~~~~spdg~l~~~~~~~~----~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~ 297 (662)
T 3azo_A 226 EDGRFADTRTLLGG---P-EEAIAQAEWAPDGSLIVATDRTG----WWNLHRVDPATGAATQLCRREEEFAGPLWTPGMR 297 (662)
T ss_dssp TTSCEEEEEEEEEE---T-TBCEEEEEECTTSCEEEEECTTS----SCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCC
T ss_pred CCCcccccEEeCCC---C-CceEcceEECCCCeEEEEECCCC----CeEEEEEECCCCceeecccccccccCccccccCc
Confidence 57 44444321 0 1111222222 567776665442 2469999998889987753210 001111 12
Q ss_pred EEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEecc
Q 008611 352 AAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (559)
Q Consensus 352 ~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~~ 390 (559)
..+...++.+++.+.. ....+|.+|+.+.....+.
T Consensus 298 ~~~~~~~~~~~~~~~~----~~~~l~~~d~~~~~~~~l~ 332 (662)
T 3azo_A 298 WFAPLANGLIAVVHGK----GAAVLGILDPESGELVDAA 332 (662)
T ss_dssp SEEECTTSCEEEEEBS----SSCEEEEEETTTTEEEECC
T ss_pred eEeEeCCCEEEEEEEc----CccEEEEEECCCCcEEEec
Confidence 3444445666666543 2457899999888877764
No 138
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=90.92 E-value=18 Score=38.26 Aligned_cols=130 Identities=14% Similarity=0.211 Sum_probs=71.2
Q ss_pred eeEEEECCEEEEEccCCCCcccCcEEEEEc-CCC--eEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccC
Q 008611 189 HGAAVVQDKMYIYGGNHNGRYLSDMHILDL-RSW--AWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHT 265 (559)
Q Consensus 189 ~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~-~t~--~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~ 265 (559)
.+-++.++.||+.... ...++++|. .++ .|+.-....... .+.+.......+.+..+++||+...
T Consensus 56 ~~P~v~~g~vyv~~~~-----~~~v~AlD~~~tG~~~W~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~v~~~-- 123 (571)
T 2ad6_A 56 GAPLVIGDMMYVHSAF-----PNNTYALNLNDPGKIVWQHKPKQDAST-----KAVMCCDVVDRGLAYGAGQIVKKQA-- 123 (571)
T ss_dssp SCCEEETTEEEEECST-----TTCEEEEETTCTTSEEEEECCCCCGGG-----GGGCTTCSCCCCCEEETTEEEEECT--
T ss_pred cccEEECCEEEEEeCC-----CCEEEEEeCCCCccEEEEEcCCCCccc-----cccccccccccccEEECCEEEEEeC--
Confidence 4456679999998652 246999999 776 588642211000 0000000112244566888888643
Q ss_pred CCCCCcceEEEEECCCCe--EEEeccCCCCCCC-ccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCC--ceEEe
Q 008611 266 KDPSEIIQVKVFDLQTCS--WSTLKTYGKPPVS-RGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETM--TWDEI 338 (559)
Q Consensus 266 ~~~~~~~~v~~yd~~t~~--W~~~~~~g~~p~~-r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~ 338 (559)
...++.+|..+++ |+.-.. ..+.. ....+-++.++.+|+-.+.... ..-..++.||..|. .|+.-
T Consensus 124 -----dg~l~alD~~tG~~~W~~~~~--~~~~~~~~~~~P~v~~g~v~vg~~~~~~-~~~g~v~a~D~~tG~~~W~~~ 193 (571)
T 2ad6_A 124 -----NGHLLALDAKTGKINWEVEVC--DPKVGSTLTQAPFVAKDTVLMGCSGAEL-GVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp -----TSEEEEEETTTCCEEEEEECC--CGGGTCBCCSCCEEETTEEEEECBCGGG-TCCCEEEEEETTTCCEEEEEE
T ss_pred -----CCEEEEEECCCCCEEEEecCC--CCCccceeccCCEEECCEEEEEecCCcc-CCCCEEEEEECCCCcEEEEEc
Confidence 2469999998874 876431 11111 1112234467888775432111 11356999999876 47654
No 139
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=90.91 E-value=22 Score=39.17 Aligned_cols=189 Identities=11% Similarity=0.048 Sum_probs=99.9
Q ss_pred ceeccCcceeccc--eEEecccCCCCCCccc-c--eeEEEE-CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeecccc
Q 008611 159 VVSEGLGSVVVYD--QWIAPPISGQRPKARY-E--HGAAVV-QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVA 232 (559)
Q Consensus 159 ~~~~~~~~~~~~~--~W~~~~~~g~~p~~r~-~--~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~ 232 (559)
+-......+..|| +|.........|.... . .+++.. ++.|+|-.. +.+.+||+.+.++..+....
T Consensus 56 lWigT~~GL~ryDG~~f~~~~~~~~~~~~l~~n~I~~i~~d~~g~lWigT~-------~Gl~~yd~~~~~f~~~~~~~-- 126 (795)
T 4a2l_A 56 MWFATYDGVNKYDGYAFTVYQHNEDDPNSIANDISRIVKTDSQGRVWIGTR-------DGLSRYDEEKDIFQNFFYEK-- 126 (795)
T ss_dssp EEEEETTEEEEECSSCEEEECCCTTCTTSCSCSCEEEEEECTTSCEEEEES-------SCEEEEETTTTEEEEECCEE--
T ss_pred EEEeecCcCcccCCCceEEEeCCCCCCCcccccceeEEEECCCCCEEEEeC-------CchheeCCCCCeEEeccccc--
Confidence 3344445566666 6766543111121111 1 122222 467887542 34899999999988764321
Q ss_pred CCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEE-ECCEEEE
Q 008611 233 ESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTL-VGTSLVI 311 (559)
Q Consensus 233 ~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~-~~~~lyv 311 (559)
..+.......+..-++.|++... ..+++||+.++++..+.. ..+....-.++.. .++.|||
T Consensus 127 --------~~~~~~i~~i~~d~~g~lwi~t~--------~gl~~~~~~~~~~~~~~~--~~~~~~~i~~i~~d~~g~lwi 188 (795)
T 4a2l_A 127 --------NGKHLQVNGIEEISPEQLLISTP--------EGLIMFDIKESKFIDDSF--STAMHKTIASTLYRQGDQIYI 188 (795)
T ss_dssp --------TTEECCCCEEEEEETTEEEEEET--------TEEEEEETTTTEEECSSS--CHHHHTCCEEEEEEETTEEEE
T ss_pred --------cCCCceEEEEEECCCCCEEEEEC--------CceEEEECCCCEEEeccC--CCCCCcceEEEEECCCCCEEE
Confidence 00000011122223678887532 358999999988776542 1111110122222 3678887
Q ss_pred EcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEecc
Q 008611 312 FGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (559)
Q Consensus 312 ~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~~ 390 (559)
.. . .+.+++||+.+.++...... +....-.++....++.|+|... .+.+++||+.+.++....
T Consensus 189 gt-~------~~Gl~~~~~~~~~~~~~~~~---~~~~~i~~i~~d~~g~lwigt~------~~Gl~~~~~~~~~~~~~~ 251 (795)
T 4a2l_A 189 GT-S------TDGLYTYSITQKTFEKVIPI---LGTKQIQAILQQSPTRIWVATE------GAGLFLINPKTKEIKNYL 251 (795)
T ss_dssp EE-S------SSCEEEEETTTCCEEECC-------CCCEEEEEEEETTEEEEEEB------SSCEEEEETTTTEEEEEC
T ss_pred EE-C------CCCEEEEeCCCCeEEEecCC---CCCCeeEEEEEcCCCCEEEEEC------CCCeEEEeCCCCeEEEee
Confidence 32 1 12489999999998776321 1112223334444676777431 124899999998888764
No 140
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=90.74 E-value=12 Score=39.48 Aligned_cols=162 Identities=12% Similarity=0.113 Sum_probs=79.0
Q ss_pred eeEEEE--CCEEEEEccCCCCcccCcEEEEEc--CCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe----CCEEEE
Q 008611 189 HGAAVV--QDKMYIYGGNHNGRYLSDMHILDL--RSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW----ENKLLS 260 (559)
Q Consensus 189 ~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~--~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~----~~~lyv 260 (559)
|+++.. +..||+.+. + +.+.+||+ .+.+-...-..+ ..+ .+.+..- +++.++
T Consensus 182 ~~v~~spdg~~l~v~~~-d-----~~V~v~D~~~~t~~~~~~i~~g------------~~p--~~va~sp~~~~dg~~l~ 241 (543)
T 1nir_A 182 HISRMSASGRYLLVIGR-D-----ARIDMIDLWAKEPTKVAEIKIG------------IEA--RSVESSKFKGYEDRYTI 241 (543)
T ss_dssp EEEEECTTSCEEEEEET-T-----SEEEEEETTSSSCEEEEEEECC------------SEE--EEEEECCSTTCTTTEEE
T ss_pred ceEEECCCCCEEEEECC-C-----CeEEEEECcCCCCcEEEEEecC------------CCc--ceEEeCCCcCCCCCEEE
Confidence 444333 346666653 1 67999999 665532211110 111 2222222 455444
Q ss_pred EeccCCCCCCcceEEEEECCCCeEEEe-ccCCC-------CCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEEEECC
Q 008611 261 IAGHTKDPSEIIQVKVFDLQTCSWSTL-KTYGK-------PPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLE 331 (559)
Q Consensus 261 ~GG~~~~~~~~~~v~~yd~~t~~W~~~-~~~g~-------~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~ 331 (559)
++++. .+.+.++|..+.+-... +..+. .|.+|....+..- +..+|+.... .+.|+.+|..
T Consensus 242 v~~~~-----~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~------~g~i~vvd~~ 310 (543)
T 1nir_A 242 AGAYW-----PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE------TGKVLLVNYK 310 (543)
T ss_dssp EEEEE-----SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT------TTEEEEEECT
T ss_pred EEEcc-----CCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC------CCeEEEEEec
Confidence 45432 24688899888764433 22110 0122222222222 3455555432 3568999987
Q ss_pred CCceEEecCCCCCCCcccccEEEEEcCC-EEEEEcCCCCCCCcCceEEEECCCCeeEec
Q 008611 332 TMTWDEIDAVGVPPSPRSDHAAAVHAER-YLLIFGGGSHAACFNDLHVLDLQTMEWSRP 389 (559)
Q Consensus 332 t~~W~~~~~~~~~p~~r~~~~~~~~~~~-~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~ 389 (559)
+..-..+... +..+.-+.+++..++ ++|+.+.. .+.|.++|+.+.+-...
T Consensus 311 ~~~~l~~~~i---~~~~~~~~~~~spdg~~l~va~~~-----~~~v~v~D~~tg~l~~~ 361 (543)
T 1nir_A 311 DIDNLTVTSI---GAAPFLHDGGWDSSHRYFMTAANN-----SNKVAVIDSKDRRLSAL 361 (543)
T ss_dssp TSSSCEEEEE---ECCSSCCCEEECTTSCEEEEEEGG-----GTEEEEEETTTTEEEEE
T ss_pred CCCcceeEEe---ccCcCccCceECCCCCEEEEEecC-----CCeEEEEECCCCeEEEe
Confidence 6432111111 123334455555454 45554432 35688999998875543
No 141
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=90.59 E-value=14 Score=36.22 Aligned_cols=110 Identities=9% Similarity=0.112 Sum_probs=56.8
Q ss_pred EEEEEeccCCCCCCcceEEEEECCCCe------EEEeccCCCCCC---CccceEEEEE-----CCEE-EEEcCcCCCCCC
Q 008611 257 KLLSIAGHTKDPSEIIQVKVFDLQTCS------WSTLKTYGKPPV---SRGGQSVTLV-----GTSL-VIFGGEDAKRSL 321 (559)
Q Consensus 257 ~lyv~GG~~~~~~~~~~v~~yd~~t~~------W~~~~~~g~~p~---~r~~~~~~~~-----~~~l-yv~GG~~~~~~~ 321 (559)
.+++.|+.+. .+.+||+.+.. +..+.. .+. ...-.++... ++.. ++.|+.+
T Consensus 82 ~~l~s~~~dg------~i~iw~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d----- 147 (397)
T 1sq9_A 82 CLVATTSFSG------DLLFYRITREDETKKVIFEKLDL---LDSDMKKHSFWALKWGASNDRLLSHRLVATDVK----- 147 (397)
T ss_dssp EEEEEEETTS------CEEEEEEEECTTTCCEEEEEECC---SCTTGGGSCEEEEEEECCC----CEEEEEEETT-----
T ss_pred cEEEEEcCCC------CEEEEEccCCcccccccceeecc---cccccCCCcEEEEEEeeccCCCCceEEEEEeCC-----
Confidence 7888887643 47788877766 666642 110 1112223333 3455 7777654
Q ss_pred cCceEEEECCC------Cc---eE---EecC--CCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeE
Q 008611 322 LNDLHILDLET------MT---WD---EIDA--VGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWS 387 (559)
Q Consensus 322 ~~~~~~yd~~t------~~---W~---~~~~--~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~ 387 (559)
..+.+||+.+ .. |. .+.. .........-.++.+..++ +++.|+.+ ..+.+||+.+....
T Consensus 148 -g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d-----g~i~i~d~~~~~~~ 220 (397)
T 1sq9_A 148 -GTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNN-----GTVQISELSTLRPL 220 (397)
T ss_dssp -SCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTT-----SEEEEEETTTTEEE
T ss_pred -CcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCC-----CcEEEEECCCCcee
Confidence 3477777665 21 11 1110 0000112223455555567 77777653 45889999876543
No 142
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=90.59 E-value=0.31 Score=47.84 Aligned_cols=69 Identities=16% Similarity=0.159 Sum_probs=52.2
Q ss_pred ccCCCChhhHHHHhhheeeeecCCCCCCC--CCCCC---hh-----h-----hhhH-----HHHhcCCCCCHHHHHHHHH
Q 008611 36 LTSKFSNDSALLLYALYQQATVGPCNVPK--PSSWS---PV-----E-----QSKW-----KSWQGLGNMATTEAMRLFV 95 (559)
Q Consensus 36 ~~~~~~~~~~l~ly~l~kqa~~g~~~~~~--p~~~~---~~-----~-----~~k~-----~aw~~~~~~s~~~a~~~yv 95 (559)
+.-..+.++.++|=||--||..||++... |+.++ +. . ...| +.|+++.|||++||+.+|+
T Consensus 130 g~~~~~~e~a~~Laal~~Qa~~Gd~~~~~~~~~~~~~~~~lP~~~~~~~~~~~~~~~~~I~~~~~~~~g~s~~eA~~~yL 209 (314)
T 1h4r_A 130 EKIYCPPEASVLLASYAVQAKYGDYDPSVHKRGFLAQEELLPKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEYL 209 (314)
T ss_dssp TSSCCCHHHHHHHHHHHHHHHHCSCCTTTSCTTTTTTCCCSCHHHHTTSCCCHHHHHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHHHHHHCCCCccccchhhcchhhcCCHHHHhhccCCHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34568999999999999999999997653 44322 10 0 1233 5799999999999999999
Q ss_pred HHHHHhCCCc
Q 008611 96 KILEEEDPGW 105 (559)
Q Consensus 96 ~~~~~~~~~~ 105 (559)
+++.++ |.|
T Consensus 210 ~~~~~l-p~y 218 (314)
T 1h4r_A 210 KIAQDL-EMY 218 (314)
T ss_dssp HHHTTS-TTT
T ss_pred HHHhcc-Ccc
Confidence 999764 555
No 143
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=90.50 E-value=7.8 Score=37.99 Aligned_cols=112 Identities=10% Similarity=0.073 Sum_probs=64.0
Q ss_pred EEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEEC--CEEEEEcCcCCCCCCcCceEEEECCCCc
Q 008611 257 KLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVG--TSLVIFGGEDAKRSLLNDLHILDLETMT 334 (559)
Q Consensus 257 ~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~--~~lyv~GG~~~~~~~~~~~~~yd~~t~~ 334 (559)
.+++.|+.++ .+.+||+.+.+....... ......-.+++... +.+++.|+.+ ..+.+||+.+..
T Consensus 87 ~~l~s~~~dg------~i~iwd~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~ 152 (383)
T 3ei3_B 87 TTVAVGSKGG------DIILWDYDVQNKTSFIQG--MGPGDAITGMKFNQFNTNQLFVSSIR------GATTLRDFSGSV 152 (383)
T ss_dssp TEEEEEEBTS------CEEEEETTSTTCEEEECC--CSTTCBEEEEEEETTEEEEEEEEETT------TEEEEEETTSCE
T ss_pred CEEEEEcCCC------eEEEEeCCCcccceeeec--CCcCCceeEEEeCCCCCCEEEEEeCC------CEEEEEECCCCc
Confidence 6777777643 488999988776655321 01111222333333 3677777653 358889998877
Q ss_pred eEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEec
Q 008611 335 WDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRP 389 (559)
Q Consensus 335 W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~ 389 (559)
...+.... .....-.+++...++.+++.|+.+ ..+.+||+.......+
T Consensus 153 ~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~ 200 (383)
T 3ei3_B 153 IQVFAKTD--SWDYWYCCVDVSVSRQMLATGDST-----GRLLLLGLDGHEIFKE 200 (383)
T ss_dssp EEEEECCC--CSSCCEEEEEEETTTTEEEEEETT-----SEEEEEETTSCEEEEE
T ss_pred eEEEeccC--CCCCCeEEEEECCCCCEEEEECCC-----CCEEEEECCCCEEEEe
Confidence 66664321 111223344555555577777654 4688999865544444
No 144
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=90.50 E-value=11 Score=35.11 Aligned_cols=157 Identities=8% Similarity=0.057 Sum_probs=83.0
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCC-CccceeEE--eCCEEEEEeccCCCCCCc
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTP-CAGHSLIP--WENKLLSIAGHTKDPSEI 271 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~-r~~~~~~~--~~~~lyv~GG~~~~~~~~ 271 (559)
++.||+.+.. ...+.+||+.......+.... ..+.. ..-++++. -++.||+.+... .
T Consensus 40 ~g~l~v~~~~-----~~~i~~~d~~g~~~~~~~~~~----------~~~~~~~~p~~i~~~~~~g~l~v~~~~~-----~ 99 (286)
T 1q7f_A 40 QNDIIVADTN-----NHRIQIFDKEGRFKFQFGECG----------KRDSQLLYPNRVAVVRNSGDIIVTERSP-----T 99 (286)
T ss_dssp TCCEEEEEGG-----GTEEEEECTTSCEEEEECCBS----------SSTTCBSSEEEEEEETTTTEEEEEECGG-----G
T ss_pred CCCEEEEECC-----CCEEEEECCCCcEEEEecccC----------CCcccccCceEEEEEcCCCeEEEEcCCC-----C
Confidence 4678887542 246889998755444442211 00011 11223333 267898876421 2
Q ss_pred ceEEEEECCCCeEEEeccCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccc
Q 008611 272 IQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSD 350 (559)
Q Consensus 272 ~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~ 350 (559)
..+.+||.....-..+.. +....-..++.. ++.+|+.... .+.+++||+.......+...+.. ..-
T Consensus 100 ~~i~~~d~~g~~~~~~~~----~~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~~g~~~~~~~~~~~~---~~p 166 (286)
T 1q7f_A 100 HQIQIYNQYGQFVRKFGA----TILQHPRGVTVDNKGRIIVVECK------VMRVIIFDQNGNVLHKFGCSKHL---EFP 166 (286)
T ss_dssp CEEEEECTTSCEEEEECT----TTCSCEEEEEECTTSCEEEEETT------TTEEEEECTTSCEEEEEECTTTC---SSE
T ss_pred CEEEEECCCCcEEEEecC----ccCCCceEEEEeCCCCEEEEECC------CCEEEEEcCCCCEEEEeCCCCcc---CCc
Confidence 468899965544333421 111112233332 5678887542 24688999876554444321111 122
Q ss_pred cEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEec
Q 008611 351 HAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRP 389 (559)
Q Consensus 351 ~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~ 389 (559)
.++++..++.+|+.+.. .+.|.+||+.......+
T Consensus 167 ~~i~~~~~g~l~v~~~~-----~~~i~~~~~~g~~~~~~ 200 (286)
T 1q7f_A 167 NGVVVNDKQEIFISDNR-----AHCVKVFNYEGQYLRQI 200 (286)
T ss_dssp EEEEECSSSEEEEEEGG-----GTEEEEEETTCCEEEEE
T ss_pred EEEEECCCCCEEEEECC-----CCEEEEEcCCCCEEEEE
Confidence 34555556778887543 24689999876655544
No 145
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=90.39 E-value=0.37 Score=46.85 Aligned_cols=71 Identities=14% Similarity=0.036 Sum_probs=52.5
Q ss_pred ccCCCChhhHHHHhhheeeeecCCCCCC--CCCCCC-----hhhhhhH-----HHHhcCCCCCHHHHHHHHHHHHHHhCC
Q 008611 36 LTSKFSNDSALLLYALYQQATVGPCNVP--KPSSWS-----PVEQSKW-----KSWQGLGNMATTEAMRLFVKILEEEDP 103 (559)
Q Consensus 36 ~~~~~~~~~~l~ly~l~kqa~~g~~~~~--~p~~~~-----~~~~~k~-----~aw~~~~~~s~~~a~~~yv~~~~~~~~ 103 (559)
+.-..+.++.+.|=||--||..||++.. .|+.+. +.....| ++|+++.|||+.||+..|++++.+ .|
T Consensus 124 G~~~c~~e~a~~LAAl~~Qae~Gd~~~~~~~~~yl~~~~~~P~~~~~~~~~I~~~h~~~~g~s~~eA~~~yL~~a~~-l~ 202 (296)
T 3qij_A 124 GRLPCSFATLALLGSYTIQSELGDYDPELHGVDYVSDFKLAPNQTKELEEKVMELHKSYRSMTPAQADLEFLENAKK-LS 202 (296)
T ss_dssp TSSCCCHHHHHHHHHHHHHHHHCSCCHHHHTTCCCTTSCCSSSCCHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHTT-ST
T ss_pred CCCCCCHHHHHHHHHHHHHHhcCCCCccccchhhCcHhhcCCcCHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHhc-cc
Confidence 4556889999999999999999998743 222221 1112233 569999999999999999999987 46
Q ss_pred Cccc
Q 008611 104 GWYS 107 (559)
Q Consensus 104 ~~~~ 107 (559)
.|..
T Consensus 203 ~yG~ 206 (296)
T 3qij_A 203 MYGV 206 (296)
T ss_dssp TTTC
T ss_pred ccCc
Confidence 5543
No 146
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=90.20 E-value=6.2 Score=37.90 Aligned_cols=121 Identities=5% Similarity=-0.090 Sum_probs=68.1
Q ss_pred CCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEEEECCCC
Q 008611 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETM 333 (559)
Q Consensus 255 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~ 333 (559)
++.||+.+... ..+++||+.+.+...+... ....-.+++.. ++++|+.+..+.. ..+.|++||+.+.
T Consensus 55 ~g~l~~~~~~~------~~i~~~d~~~~~~~~~~~~----~~~~~~~i~~~~dg~l~v~~~~~~~--~~~~i~~~d~~~~ 122 (333)
T 2dg1_A 55 QGQLFLLDVFE------GNIFKINPETKEIKRPFVS----HKANPAAIKIHKDGRLFVCYLGDFK--STGGIFAATENGD 122 (333)
T ss_dssp TSCEEEEETTT------CEEEEECTTTCCEEEEEEC----SSSSEEEEEECTTSCEEEEECTTSS--SCCEEEEECTTSC
T ss_pred CCCEEEEECCC------CEEEEEeCCCCcEEEEeeC----CCCCcceEEECCCCcEEEEeCCCCC--CCceEEEEeCCCC
Confidence 56788876542 4699999999888776421 11122233332 5678877543211 1246999999888
Q ss_pred ceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCC-CCCCcCceEEEECCCCeeEec
Q 008611 334 TWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGS-HAACFNDLHVLDLQTMEWSRP 389 (559)
Q Consensus 334 ~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~-~~~~~~dv~~~d~~~~~W~~~ 389 (559)
....+... ......-..+++..++.+|+..... .......++++|+.+.+...+
T Consensus 123 ~~~~~~~~--~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~ 177 (333)
T 2dg1_A 123 NLQDIIED--LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPI 177 (333)
T ss_dssp SCEEEECS--SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEE
T ss_pred EEEEEEcc--CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEe
Confidence 76643221 1112222344454566677754321 112234699999887666554
No 147
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=90.19 E-value=12 Score=34.92 Aligned_cols=155 Identities=10% Similarity=0.109 Sum_probs=82.1
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe-CCEEEEEeccCCCCCCcce
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-ENKLLSIAGHTKDPSEIIQ 273 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~ 273 (559)
++.||+.+.. ....+.+||.....-..+... ....-+.++.. ++.+|+.... ...
T Consensus 88 ~g~l~v~~~~----~~~~i~~~d~~g~~~~~~~~~--------------~~~~~~~i~~~~~g~l~v~~~~------~~~ 143 (286)
T 1q7f_A 88 SGDIIVTERS----PTHQIQIYNQYGQFVRKFGAT--------------ILQHPRGVTVDNKGRIIVVECK------VMR 143 (286)
T ss_dssp TTEEEEEECG----GGCEEEEECTTSCEEEEECTT--------------TCSCEEEEEECTTSCEEEEETT------TTE
T ss_pred CCeEEEEcCC----CCCEEEEECCCCcEEEEecCc--------------cCCCceEEEEeCCCCEEEEECC------CCE
Confidence 6789988631 124688999554433333110 00111223322 5788887543 246
Q ss_pred EEEEECCCCeEEEeccCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccccE
Q 008611 274 VKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHA 352 (559)
Q Consensus 274 v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~ 352 (559)
+.+||+.......+...+.... -..++.. ++.+|+.+.. .+.|.+||+.......+...+.. ..-.+
T Consensus 144 i~~~~~~g~~~~~~~~~~~~~~---p~~i~~~~~g~l~v~~~~------~~~i~~~~~~g~~~~~~~~~g~~---~~p~~ 211 (286)
T 1q7f_A 144 VIIFDQNGNVLHKFGCSKHLEF---PNGVVVNDKQEIFISDNR------AHCVKVFNYEGQYLRQIGGEGIT---NYPIG 211 (286)
T ss_dssp EEEECTTSCEEEEEECTTTCSS---EEEEEECSSSEEEEEEGG------GTEEEEEETTCCEEEEESCTTTS---CSEEE
T ss_pred EEEEcCCCCEEEEeCCCCccCC---cEEEEECCCCCEEEEECC------CCEEEEEcCCCCEEEEEccCCcc---CCCcE
Confidence 8999987655544432111111 1223333 4688887543 35689999876554454322211 11234
Q ss_pred EEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEec
Q 008611 353 AAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRP 389 (559)
Q Consensus 353 ~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~ 389 (559)
+++..++.|||.....+ ..|.+||+....-..+
T Consensus 212 i~~d~~G~l~v~~~~~~----~~i~~~~~~g~~~~~~ 244 (286)
T 1q7f_A 212 VGINSNGEILIADNHNN----FNLTIFTQDGQLISAL 244 (286)
T ss_dssp EEECTTCCEEEEECSSS----CEEEEECTTSCEEEEE
T ss_pred EEECCCCCEEEEeCCCC----EEEEEECCCCCEEEEE
Confidence 45545667888765321 2689999776544444
No 148
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=90.05 E-value=0.51 Score=46.66 Aligned_cols=109 Identities=10% Similarity=0.161 Sum_probs=53.7
Q ss_pred CCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCcCceEEEECCC
Q 008611 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLET 332 (559)
Q Consensus 255 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t 332 (559)
++.+++.|+.+. .+.+||+.+..|..+... ........++.+ ++.+++.|+.+ ..+.+||+.+
T Consensus 22 ~g~~l~~~~~d~------~i~iw~~~~~~~~~~~~~---~~h~~~v~~~~~s~~~~~l~s~s~d------~~v~vwd~~~ 86 (377)
T 3dwl_C 22 QRTEFVTTTATN------QVELYEQDGNGWKHARTF---SDHDKIVTCVDWAPKSNRIVTCSQD------RNAYVYEKRP 86 (377)
T ss_dssp SSSEEECCCSSS------CBCEEEEETTEEEECCCB---CCCSSCEEEEEECTTTCCEEEEETT------SSEEEC----
T ss_pred CCCEEEEecCCC------EEEEEEccCCceEEEEEE---ecCCceEEEEEEeCCCCEEEEEeCC------CeEEEEEcCC
Confidence 567777776543 477888888888777532 211222222223 45677777754 3478888887
Q ss_pred Cc-eEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCe
Q 008611 333 MT-WDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTME 385 (559)
Q Consensus 333 ~~-W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~ 385 (559)
.. |...... ......-.+++...++.+++.|+.+ ..+.+||+.+..
T Consensus 87 ~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~ 133 (377)
T 3dwl_C 87 DGTWKQTLVL--LRLNRAATFVRWSPNEDKFAVGSGA-----RVISVCYFEQEN 133 (377)
T ss_dssp --CCCCEEEC--CCCSSCEEEEECCTTSSCCEEEESS-----SCEEECCC----
T ss_pred CCceeeeeEe--cccCCceEEEEECCCCCEEEEEecC-----CeEEEEEECCcc
Confidence 76 4433222 1122222333444455567777653 347788877654
No 149
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=89.98 E-value=14 Score=35.53 Aligned_cols=149 Identities=12% Similarity=0.039 Sum_probs=78.1
Q ss_pred CcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe-CCEEEEEeccCCCCCCcceEEEEECCCC--eEEEe
Q 008611 211 SDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-ENKLLSIAGHTKDPSEIIQVKVFDLQTC--SWSTL 287 (559)
Q Consensus 211 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~--~W~~~ 287 (559)
+.++++|+.+++........ ... .-+.++.. ++.||+.... ...|.+||+... .-..+
T Consensus 69 ~~i~~~d~~~g~~~~~~~~~------------~~~-~p~gia~d~~g~l~v~d~~------~~~v~~~~~~g~~~~~~~~ 129 (329)
T 3fvz_A 69 DTILVIDPNNAEILQSSGKN------------LFY-LPHGLSIDTDGNYWVTDVA------LHQVFKLDPHSKEGPLLIL 129 (329)
T ss_dssp CCEEEECTTTCCEEEEECTT------------TCS-SEEEEEECTTSCEEEEETT------TTEEEEECTTCSSCCSEEE
T ss_pred CcEEEEECCCCeEEeccCCC------------ccC-CceEEEECCCCCEEEEECC------CCEEEEEeCCCCeEEEEEe
Confidence 46999999888765432111 001 11222222 5788887643 346899998765 22333
Q ss_pred ccCC---CCCCCccc-eEEEEE--CCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCC----CCc-ccccEEEEE
Q 008611 288 KTYG---KPPVSRGG-QSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVP----PSP-RSDHAAAVH 356 (559)
Q Consensus 288 ~~~g---~~p~~r~~-~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~----p~~-r~~~~~~~~ 356 (559)
...+ ........ ..+++. ++.||+..++. .+.|.+||.....-..+...+.. +.. ..-+++++.
T Consensus 130 ~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~-----~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d 204 (329)
T 3fvz_A 130 GRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYC-----NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALV 204 (329)
T ss_dssp SBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSS-----CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEE
T ss_pred cccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCC-----CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEE
Confidence 2111 10111112 233443 56899987631 24588999654443333221111 111 112445555
Q ss_pred cC-CEEEEEcCCCCCCCcCceEEEECCCCeeEe
Q 008611 357 AE-RYLLIFGGGSHAACFNDLHVLDLQTMEWSR 388 (559)
Q Consensus 357 ~~-~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~ 388 (559)
.+ +.|||....+ +.|.+||+.+.+...
T Consensus 205 ~~~g~l~v~d~~~-----~~I~~~~~~~G~~~~ 232 (329)
T 3fvz_A 205 PHLDQLCVADREN-----GRIQCFKTDTKEFVR 232 (329)
T ss_dssp TTTTEEEEEETTT-----TEEEEEETTTCCEEE
T ss_pred CCCCEEEEEECCC-----CEEEEEECCCCcEEE
Confidence 55 7899987542 468999998665544
No 150
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*
Probab=89.93 E-value=4.3 Score=41.80 Aligned_cols=59 Identities=14% Similarity=0.206 Sum_probs=40.0
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCCCCCcceE
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQV 274 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v 274 (559)
++.+|+|-| +..|+||..+.+.....-. ..+. --++....+++|+|-|. ..
T Consensus 158 ~~~~yfFkG-------~~yw~yd~~~~~~~~~~w~-------------gi~~-iDAA~~~~g~~YfFkG~--------~y 208 (460)
T 1qhu_A 158 DEGILFFQG-------NRKWFWDLTTGTKKERSWP-------------AVGN-CTSALRWLGRYYCFQGN--------QF 208 (460)
T ss_dssp SSEEEEEET-------TEEEEEETTTTEEEEECCT-------------TSCC-CSEEEEETTEEEEEETT--------EE
T ss_pred CCeEEEEec-------ccEEEEecccceeecccCC-------------CCCc-cchheeeCCceEEEECC--------EE
Confidence 678999988 6789999988765532111 1222 24555568999999885 57
Q ss_pred EEEECCCC
Q 008611 275 KVFDLQTC 282 (559)
Q Consensus 275 ~~yd~~t~ 282 (559)
++||..+.
T Consensus 209 ~rfd~~~~ 216 (460)
T 1qhu_A 209 LRFNPVSG 216 (460)
T ss_dssp EEECTTTC
T ss_pred EEEcCccC
Confidence 77877654
No 151
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=89.83 E-value=5.5 Score=37.95 Aligned_cols=160 Identities=7% Similarity=-0.069 Sum_probs=79.6
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCC-----CC
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKD-----PS 269 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~-----~~ 269 (559)
++.||+..+ +.+++||+.+++++.+.... ...+..+....++.-+|.||+-.-.... ..
T Consensus 64 dG~l~v~~~-------~~l~~~d~~~g~~~~~~~~~---------~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~ 127 (297)
T 3g4e_A 64 SGGYVATIG-------TKFCALNWKEQSAVVLATVD---------NDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLER 127 (297)
T ss_dssp TSSEEEEET-------TEEEEEETTTTEEEEEEECC---------TTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCT
T ss_pred CCCEEEEEC-------CeEEEEECCCCcEEEEEecC---------CCCCCCCCCCEEECCCCCEEEecCCcccccccccC
Confidence 456666532 46999999999988775431 0112222222222236777764311110 12
Q ss_pred CcceEEEEECCCCeEEEeccCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCcCceEEEEC--CCCceEEecCCCCCC
Q 008611 270 EIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDL--ETMTWDEIDAVGVPP 345 (559)
Q Consensus 270 ~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~--~t~~W~~~~~~~~~p 345 (559)
....++++|+. .+...+... ... ...++.. +..||+.... .+.|++||+ .+............+
T Consensus 128 ~~~~l~~~d~~-g~~~~~~~~--~~~---pngi~~spdg~~lyv~~~~------~~~i~~~~~d~~~G~~~~~~~~~~~~ 195 (297)
T 3g4e_A 128 HQGALYSLFPD-HHVKKYFDQ--VDI---SNGLDWSLDHKIFYYIDSL------SYSVDAFDYDLQTGQISNRRSVYKLE 195 (297)
T ss_dssp TCEEEEEECTT-SCEEEEEEE--ESB---EEEEEECTTSCEEEEEEGG------GTEEEEEEECTTTCCEEEEEEEEECC
T ss_pred CCcEEEEEECC-CCEEEEeec--ccc---ccceEEcCCCCEEEEecCC------CCcEEEEeccCCCCcccCcEEEEECC
Confidence 34578888875 333333211 111 1233333 3368877643 356888876 455443211100001
Q ss_pred -CcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeE
Q 008611 346 -SPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWS 387 (559)
Q Consensus 346 -~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~ 387 (559)
....-.++++-.++.||+..... +.|++||+.+.+..
T Consensus 196 ~~~~~p~g~~~d~~G~lwva~~~~-----~~v~~~d~~tG~~~ 233 (297)
T 3g4e_A 196 KEEQIPDGMCIDAEGKLWVACYNG-----GRVIRLDPVTGKRL 233 (297)
T ss_dssp GGGCEEEEEEEBTTSCEEEEEETT-----TEEEEECTTTCCEE
T ss_pred CCCCCCCeeEECCCCCEEEEEcCC-----CEEEEEcCCCceEE
Confidence 11112345554566788774321 34999999866543
No 152
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=89.38 E-value=0.34 Score=41.09 Aligned_cols=50 Identities=16% Similarity=0.179 Sum_probs=41.7
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 509 PETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 509 ~~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
.+..+..+.++.+|+..+.++|...+.++.+++++++++++++.+|++++
T Consensus 77 ~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~ 126 (138)
T 3hnw_A 77 ADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNI 126 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666678888888888888888888888889999999988888888775
No 153
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1
Probab=89.27 E-value=12 Score=33.81 Aligned_cols=156 Identities=12% Similarity=0.058 Sum_probs=80.4
Q ss_pred eEEEECCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe-CCEEEEEeccCCCC
Q 008611 190 GAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-ENKLLSIAGHTKDP 268 (559)
Q Consensus 190 ~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~ 268 (559)
|++.+.+++|+|=| ..+|+++.....+......... +..| .....+.... ++++|+|-|.
T Consensus 28 Ai~~~~g~~y~Fkg-------~~~wr~~~~~~~~~p~~I~~~w-------p~Lp-~~iDAa~~~~~~~~iyfFkG~---- 88 (207)
T 1pex_A 28 AITSLRGETMIFKD-------RFFWRLHPQQVDAELFLTKSFW-------PELP-NRIDAAYEHPSHDLIFIFRGR---- 88 (207)
T ss_dssp EEEEETTEEEEEET-------TEEEEECSSSSCCEEEEHHHHC-------TTSC-SSCCEEEEETTTTEEEEEETT----
T ss_pred EEEeCCCcEEEEEC-------CEEEEEeCCCcCCCceehhHhc-------cCCC-CCccEEEEeccCCcEEEEccC----
Confidence 34457899999977 5688887655444322211100 1122 2222222222 5899999774
Q ss_pred CCcceEEEEECCCCe---EEEeccCCCCCCCccceEEEE-E--CCEEEEEcCcCCCCCCcCceEEEECCCCceEEecC--
Q 008611 269 SEIIQVKVFDLQTCS---WSTLKTYGKPPVSRGGQSVTL-V--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDA-- 340 (559)
Q Consensus 269 ~~~~~v~~yd~~t~~---W~~~~~~g~~p~~r~~~~~~~-~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~-- 340 (559)
.+|+|+-.+.. =..|...| +|..-...-++. . ++++|+|-| +..|+||..+.+-..--+
T Consensus 89 ----~~w~~~~~~~~~gyPk~I~~~G-lP~~~~~IDAA~~~~~~gk~yfFkG--------~~ywr~d~~~~~~d~gyPr~ 155 (207)
T 1pex_A 89 ----KFWALNGYDILEGYPKKISELG-LPKEVKKISAAVHFEDTGKTLLFSG--------NQVWRYDDTNHIMDKDYPRL 155 (207)
T ss_dssp ----EEEEESTTCCCTTCSEESTTTT-CCTTCCCCCEEEECTTTSEEEEEET--------TEEEEEETTTTEECSSCCCB
T ss_pred ----EEEEEeCCeeccCCceeccccC-CCCCCccccEEEEeCCCCEEEEEeC--------CEEEEEeCcCccccCCCCcc
Confidence 46777643221 12232222 332111222333 2 369999976 357999987643211000
Q ss_pred ----CCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeE
Q 008611 341 ----VGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWS 387 (559)
Q Consensus 341 ----~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~ 387 (559)
-...| ..-.++.. .++.+|+|-|. ..|+||..+.+-.
T Consensus 156 i~~~~~Gip--~~iDaAf~-~~g~~YfFkg~-------~y~rf~~~~~~v~ 196 (207)
T 1pex_A 156 IEEDFPGIG--DKVDAVYE-KNGYIYFFNGP-------IQFEYSIWSNRIV 196 (207)
T ss_dssp HHHHSTTSC--SCCSEEEE-ETTEEEEEETT-------EEEEEETTTTEEE
T ss_pred HHHcCCCCC--CCccEEEE-cCCcEEEEECC-------EEEEEeCCccEEe
Confidence 00112 11223333 46789999874 4899998876543
No 154
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=89.19 E-value=1.7 Score=41.95 Aligned_cols=115 Identities=12% Similarity=0.084 Sum_probs=60.1
Q ss_pred CCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEE-CC-EEEEEcCcCCCCCCcCceEEEECCC
Q 008611 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GT-SLVIFGGEDAKRSLLNDLHILDLET 332 (559)
Q Consensus 255 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~yd~~t 332 (559)
++.+|+.++.. ..++++|+.+++....-.. +....-+.++.. ++ .+|+.+.. .+.+++||+.+
T Consensus 10 ~~~~~v~~~~~------~~v~~~d~~~~~~~~~~~~---~~~~~~~~~~~s~dg~~~~v~~~~------~~~i~~~d~~t 74 (349)
T 1jmx_B 10 GHEYMIVTNYP------NNLHVVDVASDTVYKSCVM---PDKFGPGTAMMAPDNRTAYVLNNH------YGDIYGIDLDT 74 (349)
T ss_dssp TCEEEEEEETT------TEEEEEETTTTEEEEEEEC---SSCCSSCEEEECTTSSEEEEEETT------TTEEEEEETTT
T ss_pred CCEEEEEeCCC------CeEEEEECCCCcEEEEEec---CCCCCCceeEECCCCCEEEEEeCC------CCcEEEEeCCC
Confidence 67788887653 4699999999876543221 110012233333 33 57777642 24699999988
Q ss_pred CceEEecCCCCCCC--cccccEEEEEcCC-EEEEEcCC---CCCC---CcCceEEEECCCC
Q 008611 333 MTWDEIDAVGVPPS--PRSDHAAAVHAER-YLLIFGGG---SHAA---CFNDLHVLDLQTM 384 (559)
Q Consensus 333 ~~W~~~~~~~~~p~--~r~~~~~~~~~~~-~l~v~GG~---~~~~---~~~dv~~~d~~~~ 384 (559)
.+....-..+..|. ...-+.+++..++ +||+.+.. .... ..+.+++||+.+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 135 (349)
T 1jmx_B 75 CKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADG 135 (349)
T ss_dssp TEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGG
T ss_pred CcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCc
Confidence 76543322111111 1112344454444 45554421 0000 0246899998764
No 155
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=88.91 E-value=0.72 Score=46.37 Aligned_cols=69 Identities=22% Similarity=0.219 Sum_probs=51.8
Q ss_pred ccCCCChhhHHHHhhheeeeecCCCCCCC--CCCCCh-----------h-hhhhHHHHhcCCCCCHHHHHHHHHHHHHHh
Q 008611 36 LTSKFSNDSALLLYALYQQATVGPCNVPK--PSSWSP-----------V-EQSKWKSWQGLGNMATTEAMRLFVKILEEE 101 (559)
Q Consensus 36 ~~~~~~~~~~l~ly~l~kqa~~g~~~~~~--p~~~~~-----------~-~~~k~~aw~~~~~~s~~~a~~~yv~~~~~~ 101 (559)
+.-+.+.++.++|=||.-||..||++... ++.++. . .+.=-++|+++.|||+++|+.+|++++.++
T Consensus 197 G~~~c~~e~a~~LAAl~~qae~Gd~~~~~~~~~~~~l~~~lP~~~~~~~~e~~I~~~~~~~~g~s~~eA~~~yL~~~~~l 276 (371)
T 3ivf_A 197 GSHPVSFDKACEFAGFQCQIQFGPHNEQKHKAGFLDLKDFLPKEYVKQKGERKIFQAHKNCGQMSEIEAKVRYVKLARSL 276 (371)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHHCSCCTTTSCTTCSCGGGTSCGGGTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHS
T ss_pred ceeecCHHHHHHHHHHHHHHHhCCCChhhcccchhcccccCCHHHhCchHHHHHHHHHHHccCCCHHHHHHHHHHHHhcc
Confidence 34568899999999999999999997643 332211 0 122246799999999999999999999875
Q ss_pred CCCc
Q 008611 102 DPGW 105 (559)
Q Consensus 102 ~~~~ 105 (559)
|.|
T Consensus 277 -~~y 279 (371)
T 3ivf_A 277 -KTY 279 (371)
T ss_dssp -TTT
T ss_pred -ccc
Confidence 444
No 156
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=88.88 E-value=27 Score=37.22 Aligned_cols=129 Identities=19% Similarity=0.186 Sum_probs=69.8
Q ss_pred eeEEEECCEEEEEccCCCCcccCcEEEEEc-CCC--eEEEeeeccccCCCCCCCCCCCCCC---ccceeEE--eCCE---
Q 008611 189 HGAAVVQDKMYIYGGNHNGRYLSDMHILDL-RSW--AWSKIQAKAVAESTESPSPALLTPC---AGHSLIP--WENK--- 257 (559)
Q Consensus 189 ~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~-~t~--~W~~~~~~~~~~~~~~~~~~~p~~r---~~~~~~~--~~~~--- 257 (559)
.+-++.++.||+.+.. .+.++++|. .++ .|+.-..... ...+..+ ...+.+. .++.
T Consensus 56 ~tP~v~~g~vyv~~~~-----~~~v~AlD~~~tG~~lW~~~~~~~~--------~~~~~~~~~~~~~g~av~p~~g~~~~ 122 (599)
T 1w6s_A 56 GAPLVVDGKMYIHTSF-----PNNTFALGLDDPGTILWQDKPKQNP--------AARAVACCDLVNRGLAYWPGDGKTPA 122 (599)
T ss_dssp SCCEEETTEEEEECST-----TTCEEEEETTCTTSEEEEECCCCCG--------GGGGGCSSCSCCCCCEEECCCSSSCC
T ss_pred eccEEECCEEEEEeCC-----CCEEEEEeCCCCCcEEEEECCCCCc--------cccccccccccccceEEEecCCccee
Confidence 4456679999998752 246999999 776 5886432110 0000011 1223444 5666
Q ss_pred -EEEEeccCCCCCCcceEEEEECCCCe--EEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCCc
Q 008611 258 -LLSIAGHTKDPSEIIQVKVFDLQTCS--WSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMT 334 (559)
Q Consensus 258 -lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~ 334 (559)
||+... ...++.+|..+++ |+.-... ..+......+-++.++.||+-.+... ......|+.||..|.+
T Consensus 123 rV~v~t~-------dg~l~AlDa~TG~~~W~~~~~~-~~~~~~~~ssP~v~~g~V~vg~~g~e-~g~~g~v~A~D~~TG~ 193 (599)
T 1w6s_A 123 LILKTQL-------DGNVAALNAETGETVWKVENSD-IKVGSTLTIAPYVVKDKVIIGSSGAE-LGVRGYLTAYDVKTGE 193 (599)
T ss_dssp EEEEECT-------TSEEEEEETTTCCEEEEEECCC-GGGTCBCCSCCEEETTEEEECCBCGG-GTCCCEEEEEETTTCC
T ss_pred EEEEEcC-------CCEEEEEECCCCCEEEeecCCC-CCccceeecCCEEECCEEEEEecccc-cCCCCeEEEEECCCCc
Confidence 777432 2468999998875 8764311 00000111222446787776432111 1123569999998764
Q ss_pred --eEEec
Q 008611 335 --WDEID 339 (559)
Q Consensus 335 --W~~~~ 339 (559)
|+.-.
T Consensus 194 ~~W~~~~ 200 (599)
T 1w6s_A 194 QVWRAYA 200 (599)
T ss_dssp EEEEEES
T ss_pred EEEEEcC
Confidence 87653
No 157
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=88.55 E-value=18 Score=34.81 Aligned_cols=66 Identities=15% Similarity=0.190 Sum_probs=41.2
Q ss_pred CCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCe
Q 008611 306 GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTME 385 (559)
Q Consensus 306 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~ 385 (559)
++.+++.|+.++ .+.+||+.+..-...... .....-.+++...++.+++.|+.+ ..|.+||+.+..
T Consensus 138 ~~~~l~s~s~dg------~i~~wd~~~~~~~~~~~~---~~~~~i~~~~~~pdg~~lasg~~d-----g~i~iwd~~~~~ 203 (343)
T 3lrv_A 138 NTEYFIWADNRG------TIGFQSYEDDSQYIVHSA---KSDVEYSSGVLHKDSLLLALYSPD-----GILDVYNLSSPD 203 (343)
T ss_dssp -CCEEEEEETTC------CEEEEESSSSCEEEEECC---CSSCCCCEEEECTTSCEEEEECTT-----SCEEEEESSCTT
T ss_pred CCCEEEEEeCCC------cEEEEECCCCcEEEEEec---CCCCceEEEEECCCCCEEEEEcCC-----CEEEEEECCCCC
Confidence 456777777543 488899988776444321 122223455565677788888754 358899988764
No 158
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=88.50 E-value=15 Score=38.45 Aligned_cols=111 Identities=8% Similarity=-0.010 Sum_probs=52.4
Q ss_pred CCEEEEEeccCCCCCCcceEEEEECCCC------eEEEeccCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEE
Q 008611 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTC------SWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHI 327 (559)
Q Consensus 255 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~------~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~ 327 (559)
++.+++.|+.++ .+.+||+.+. ....+....... ..-.+++.. +++.++.+|.+... ...++.
T Consensus 77 ~~~~l~s~~~dg------~v~vw~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~~~~~--~~~v~~ 146 (615)
T 1pgu_A 77 GSQYLCSGDESG------KVIVWGWTFDKESNSVEVNVKSEFQVLA--GPISDISWDFEGRRLCVVGEGRDN--FGVFIS 146 (615)
T ss_dssp TCCEEEEEETTS------EEEEEEEEEEGGGTEEEEEEEEEEECCS--SCEEEEEECTTSSEEEEEECCSSC--SEEEEE
T ss_pred CCCEEEEecCCC------EEEEEeCCCCcccccccccccchhhccc--ccEEEEEEeCCCCEEEEeccCCCC--ccEEEE
Confidence 567777777643 4777777644 333332110111 111222222 45666666654322 345677
Q ss_pred EECCCCceEEecCCCCCCCcccccEEEEEcCC-EEEEEcCCCCCCCcCceEEEECCCCee
Q 008611 328 LDLETMTWDEIDAVGVPPSPRSDHAAAVHAER-YLLIFGGGSHAACFNDLHVLDLQTMEW 386 (559)
Q Consensus 328 yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~-~l~v~GG~~~~~~~~dv~~~d~~~~~W 386 (559)
+|. ..-...- . .....-.++....++ .+++.|+.+ ..+.+||+.+..-
T Consensus 147 ~d~--~~~~~~~-~---~~~~~v~~~~~~~~~~~~l~~~~~d-----~~v~vwd~~~~~~ 195 (615)
T 1pgu_A 147 WDS--GNSLGEV-S---GHSQRINACHLKQSRPMRSMTVGDD-----GSVVFYQGPPFKF 195 (615)
T ss_dssp TTT--CCEEEEC-C---SCSSCEEEEEECSSSSCEEEEEETT-----TEEEEEETTTBEE
T ss_pred EEC--CCcceee-e---cCCccEEEEEECCCCCcEEEEEeCC-----CcEEEEeCCCcce
Confidence 763 2221111 1 111222334444444 367776643 4588889877654
No 159
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=88.47 E-value=30 Score=40.08 Aligned_cols=145 Identities=11% Similarity=0.071 Sum_probs=75.5
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe--CCEEEEEeccCCCCCCcc
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHTKDPSEII 272 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~ 272 (559)
++.+++.||.+ ..+.+||+.+++-...-. .....-.++.+ ++.+++.||.+ .
T Consensus 626 ~~~~l~s~~~d-----~~i~vw~~~~~~~~~~~~---------------~h~~~v~~~~~s~~~~~l~s~~~d------~ 679 (1249)
T 3sfz_A 626 DGQRIASCGAD-----KTLQVFKAETGEKLLDIK---------------AHEDEVLCCAFSSDDSYIATCSAD------K 679 (1249)
T ss_dssp TSSEEEEEETT-----SCEEEEETTTCCEEEEEC---------------CCSSCEEEEEECTTSSEEEEEETT------S
T ss_pred CCCEEEEEeCC-----CeEEEEECCCCCEEEEec---------------cCCCCEEEEEEecCCCEEEEEeCC------C
Confidence 55667777733 368899998876432211 11111222333 56777777753 3
Q ss_pred eEEEEECCCCeEEEeccCCCCCCCccceEEEEE----CCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcc
Q 008611 273 QVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV----GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPR 348 (559)
Q Consensus 273 ~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r 348 (559)
.+.++|+.+++....-. .. .....++.+ ++.+++.|+.+ ..+.+||+.+......-.. ...
T Consensus 680 ~v~vwd~~~~~~~~~~~---~~--~~~v~~~~~~~~~~~~~l~sg~~d------~~v~vwd~~~~~~~~~~~~----h~~ 744 (1249)
T 3sfz_A 680 KVKIWDSATGKLVHTYD---EH--SEQVNCCHFTNKSNHLLLATGSND------FFLKLWDLNQKECRNTMFG----HTN 744 (1249)
T ss_dssp EEEEEETTTCCEEEEEE---CC--SSCEEEEEECSSSSCCEEEEEETT------SCEEEEETTSSSEEEEECC----CSS
T ss_pred eEEEEECCCCceEEEEc---CC--CCcEEEEEEecCCCceEEEEEeCC------CeEEEEECCCcchhheecC----CCC
Confidence 58899998876543321 11 111222222 23455566543 3488899988765433211 111
Q ss_pred cccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCe
Q 008611 349 SDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTME 385 (559)
Q Consensus 349 ~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~ 385 (559)
.-.++++..++.+++.|+.+ ..+.+||+.+..
T Consensus 745 ~v~~~~~sp~~~~l~s~s~d-----g~v~vwd~~~~~ 776 (1249)
T 3sfz_A 745 SVNHCRFSPDDELLASCSAD-----GTLRLWDVRSAN 776 (1249)
T ss_dssp CEEEEEECSSTTEEEEEESS-----SEEEEEEGGGTE
T ss_pred CEEEEEEecCCCEEEEEECC-----CeEEEEeCCCCc
Confidence 12233444455566666643 346777776543
No 160
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=88.44 E-value=31 Score=37.33 Aligned_cols=168 Identities=14% Similarity=0.068 Sum_probs=87.0
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCC-------
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKD------- 267 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~------- 267 (559)
+++.++|+-..++..-..++++|+.+++....... ..+....+.. +++-++++.....
T Consensus 139 Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~--------------~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 139 DGRILAYSLSLAGSDWREIHLMDVESKQPLETPLK--------------DVKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp TSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEE--------------EEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred CCCEEEEEEecCCCceEEEEEEECCCCCCCccccC--------------CceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 45555554333334446899999999987654221 1112223334 6654444433321
Q ss_pred CCCcceEEEEECCCCeE--EEeccCCCCCC--CccceEEEEE-CCE-EEEEcCcCCCCCCcCceEEEECCCC--ceEEec
Q 008611 268 PSEIIQVKVFDLQTCSW--STLKTYGKPPV--SRGGQSVTLV-GTS-LVIFGGEDAKRSLLNDLHILDLETM--TWDEID 339 (559)
Q Consensus 268 ~~~~~~v~~yd~~t~~W--~~~~~~g~~p~--~r~~~~~~~~-~~~-lyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~~ 339 (559)
......++++++.+.+= ..+. ..+. +....++... +++ |++...... ..+++|.+|+.+. .|..+.
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v~---~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~---~~~~i~~~d~~~~~~~~~~l~ 277 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLVF---GAIPAQHHRYVGATVTEDDRFLLISAANST---SGNRLYVKDLSQENAPLLTVQ 277 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEEE---SCSGGGCCSEEEEEECTTSCEEEEEEESSS---SCCEEEEEETTSTTCCCEEEE
T ss_pred cCCCcEEEEEECCCCcccceEEE---ecCCCCCeEEEEEEEcCCCCEEEEEEccCC---CCcEEEEEECCCCCCceEEEe
Confidence 13456788888877542 1221 1111 2222222222 444 444332221 1368999998765 788775
Q ss_pred CCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCC---eeEecc
Q 008611 340 AVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTM---EWSRPT 390 (559)
Q Consensus 340 ~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~---~W~~~~ 390 (559)
.. . ......+...++.+|+....+. ....|+.+|+.+. .|..+.
T Consensus 278 ~~----~-~~~~~~~~~~g~~l~~~t~~~~--~~~~l~~~d~~~~~~~~~~~l~ 324 (693)
T 3iuj_A 278 GD----L-DADVSLVDNKGSTLYLLTNRDA--PNRRLVTVDAANPGPAHWRDLI 324 (693)
T ss_dssp CS----S-SSCEEEEEEETTEEEEEECTTC--TTCEEEEEETTSCCGGGCEEEE
T ss_pred CC----C-CceEEEEeccCCEEEEEECCCC--CCCEEEEEeCCCCCccccEEEe
Confidence 32 1 1122223345677888765322 2357999998764 488764
No 161
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=88.18 E-value=8.7 Score=41.69 Aligned_cols=165 Identities=12% Similarity=-0.022 Sum_probs=85.7
Q ss_pred CCEEEEEccCCCC--------cccCcEEEEEcCCCeEE--EeeeccccCCCCCCCCCCCCCCccceeEEe--CCEEEEEe
Q 008611 195 QDKMYIYGGNHNG--------RYLSDMHILDLRSWAWS--KIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIA 262 (559)
Q Consensus 195 ~~~lyv~GG~~~~--------~~~~~v~~yd~~t~~W~--~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~G 262 (559)
+++.++++..+.. .....++++++.+..-. .+-.. +........+.+ +|+.++++
T Consensus 178 Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~-------------~~~~~~~~~~~~SpDG~~l~~~ 244 (695)
T 2bkl_A 178 DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHER-------------TGDPTTFLQSDLSRDGKYLFVY 244 (695)
T ss_dssp TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECC-------------CCCTTCEEEEEECTTSCCEEEE
T ss_pred CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEec-------------CCCCEEEEEEEECCCCCEEEEE
Confidence 5555666554332 23566999999887532 22111 111111122223 55544554
Q ss_pred ccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCCc---eEEec
Q 008611 263 GHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMT---WDEID 339 (559)
Q Consensus 263 G~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~---W~~~~ 339 (559)
..... ..+.++.+|..+..|..+... .... ...+..++.+|+....+. ....|+.+|+.+.. |..+.
T Consensus 245 ~~~~~--~~~~l~~~~~~~~~~~~l~~~----~~~~-~~~~~~~g~l~~~s~~~~---~~~~l~~~d~~~~~~~~~~~l~ 314 (695)
T 2bkl_A 245 ILRGW--SENDVYWKRPGEKDFRLLVKG----VGAK-YEVHAWKDRFYVLTDEGA---PRQRVFEVDPAKPARASWKEIV 314 (695)
T ss_dssp EEETT--TEEEEEEECTTCSSCEEEEEC----SSCC-EEEEEETTEEEEEECTTC---TTCEEEEEBTTBCSGGGCEEEE
T ss_pred EeCCC--CceEEEEEcCCCCceEEeecC----CCce-EEEEecCCcEEEEECCCC---CCCEEEEEeCCCCCccCCeEEe
Confidence 43321 456888888878888888632 1111 222224555666544322 13579999987765 88875
Q ss_pred CCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEec
Q 008611 340 AVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRP 389 (559)
Q Consensus 340 ~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~ 389 (559)
... + ...-..+... ++.|++.+..++ ...++.+|+....-..+
T Consensus 315 ~~~--~-~~~l~~~~~~-~~~lv~~~~~dg---~~~l~~~~~~g~~~~~l 357 (695)
T 2bkl_A 315 PED--S-SASLLSVSIV-GGHLSLEYLKDA---TSEVRVATLKGKPVRTV 357 (695)
T ss_dssp CCC--S-SCEEEEEEEE-TTEEEEEEEETT---EEEEEEEETTCCEEEEC
T ss_pred cCC--C-CCeEEEEEEE-CCEEEEEEEECC---EEEEEEEeCCCCeeEEe
Confidence 321 1 1111223333 666777654322 35688898765544444
No 162
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=88.17 E-value=20 Score=34.74 Aligned_cols=172 Identities=10% Similarity=0.122 Sum_probs=86.6
Q ss_pred eEEecccCCCCCCcccceeEEE-ECCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccce
Q 008611 172 QWIAPPISGQRPKARYEHGAAV-VQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHS 250 (559)
Q Consensus 172 ~W~~~~~~g~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~ 250 (559)
+|+.+......|. ..+.++. -++.+|+.|.. ..+++-+-...+|+.+... .....++
T Consensus 110 tW~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~------g~v~~S~DgG~tW~~~~~~--------------~~~~~~~ 167 (327)
T 2xbg_A 110 SWSQIPLDPKLPG--SPRLIKALGNGSAEMITNV------GAIYRTKDSGKNWQALVQE--------------AIGVMRN 167 (327)
T ss_dssp SCEECCCCTTCSS--CEEEEEEEETTEEEEEETT------CCEEEESSTTSSEEEEECS--------------CCCCEEE
T ss_pred CceECccccCCCC--CeEEEEEECCCCEEEEeCC------ccEEEEcCCCCCCEEeecC--------------CCcceEE
Confidence 8998764211221 1233333 46788888751 1344433345689988542 1122333
Q ss_pred eEEe-CCEEEEEeccCCCCCCcceEEEEECC-CCeEEEeccCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEE
Q 008611 251 LIPW-ENKLLSIAGHTKDPSEIIQVKVFDLQ-TCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHI 327 (559)
Q Consensus 251 ~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~-t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~ 327 (559)
++.. ++.+|++|-. . .+++-+-. -..|+.+.. +.+...+.++.. ++.+|+.+.. ..+++
T Consensus 168 ~~~~~~~~~~~~g~~-G------~~~~S~d~gG~tW~~~~~----~~~~~~~~~~~~~~g~~~~~~~~-------G~~~~ 229 (327)
T 2xbg_A 168 LNRSPSGEYVAVSSR-G------SFYSTWEPGQTAWEPHNR----TTSRRLHNMGFTPDGRLWMIVNG-------GKIAF 229 (327)
T ss_dssp EEECTTSCEEEEETT-S------SEEEEECTTCSSCEEEEC----CSSSCEEEEEECTTSCEEEEETT-------TEEEE
T ss_pred EEEcCCCcEEEEECC-C------cEEEEeCCCCCceeECCC----CCCCccceeEECCCCCEEEEeCC-------ceEEE
Confidence 3333 4566666532 1 24443322 578999852 333444444443 4578877641 12444
Q ss_pred EECC-CCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEecc
Q 008611 328 LDLE-TMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (559)
Q Consensus 328 yd~~-t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~~ 390 (559)
.+.+ ..+|+.+... ..+.....++++...++.+|+.|+.. .+++-.-...+|..+.
T Consensus 230 s~~D~G~tW~~~~~~-~~~~~~~~~~v~~~~~~~~~~~g~~g------~i~~S~DgG~tW~~~~ 286 (327)
T 2xbg_A 230 SDPDNSENWGELLSP-LRRNSVGFLDLAYRTPNEVWLAGGAG------ALLCSQDGGQTWQQDV 286 (327)
T ss_dssp EETTEEEEECCCBCT-TSSCCSCEEEEEESSSSCEEEEESTT------CEEEESSTTSSCEECG
T ss_pred ecCCCCCeeEeccCC-cccCCcceEEEEecCCCEEEEEeCCC------eEEEeCCCCcccEEcC
Confidence 4333 4578876421 01222223444444456688887631 2443333356899875
No 163
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=88.17 E-value=1.1 Score=35.83 Aligned_cols=42 Identities=21% Similarity=0.278 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhh
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKV 557 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ke 557 (559)
...|++++.+.+.++++.+-++..|.++|+++..++++|.++
T Consensus 59 ~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~ 100 (121)
T 3mq7_A 59 MASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRE 100 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444445566666666666666666655555544
No 164
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=88.06 E-value=23 Score=38.14 Aligned_cols=151 Identities=15% Similarity=0.117 Sum_probs=76.7
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCCCCCcceE
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQV 274 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v 274 (559)
++.+++.|+.+ ..+.++|+.++.-...-. . +.......+..-++..++.|+.+. .+
T Consensus 441 ~g~~l~sgs~D-----g~v~vwd~~~~~~~~~~~-~------------h~~~v~~~~~s~~~~~l~s~s~D~------~i 496 (694)
T 3dm0_A 441 DGQFALSGSWD-----GELRLWDLAAGVSTRRFV-G------------HTKDVLSVAFSLDNRQIVSASRDR------TI 496 (694)
T ss_dssp TSSEEEEEETT-----SEEEEEETTTTEEEEEEE-C------------CSSCEEEEEECTTSSCEEEEETTS------CE
T ss_pred CCCEEEEEeCC-----CcEEEEECCCCcceeEEe-C------------CCCCEEEEEEeCCCCEEEEEeCCC------EE
Confidence 45667777643 358889988775432211 0 111111111112566777777654 47
Q ss_pred EEEECCCCeEEEeccCCCCCCCccceEEEEE--CC--EEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccc
Q 008611 275 KVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GT--SLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSD 350 (559)
Q Consensus 275 ~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~--~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~ 350 (559)
.++|+....-..+...+ ...+....++.+ ++ .+++.|+.++ .|.+||+.+.+-...-. .....-
T Consensus 497 ~iwd~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~l~s~s~d~------~v~vwd~~~~~~~~~~~----~h~~~v 564 (694)
T 3dm0_A 497 KLWNTLGECKYTISEGG--EGHRDWVSCVRFSPNTLQPTIVSASWDK------TVKVWNLSNCKLRSTLA----GHTGYV 564 (694)
T ss_dssp EEECTTSCEEEEECSST--TSCSSCEEEEEECSCSSSCEEEEEETTS------CEEEEETTTCCEEEEEC----CCSSCE
T ss_pred EEEECCCCcceeeccCC--CCCCCcEEEEEEeCCCCcceEEEEeCCC------eEEEEECCCCcEEEEEc----CCCCCE
Confidence 77777654333332111 111122223333 22 4566666543 47889988765543211 111122
Q ss_pred cEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCee
Q 008611 351 HAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEW 386 (559)
Q Consensus 351 ~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W 386 (559)
.++++..++.+++.||.+ ..|.+||+.+..-
T Consensus 565 ~~v~~spdg~~l~sg~~D-----g~i~iwd~~~~~~ 595 (694)
T 3dm0_A 565 STVAVSPDGSLCASGGKD-----GVVLLWDLAEGKK 595 (694)
T ss_dssp EEEEECTTSSEEEEEETT-----SBCEEEETTTTEE
T ss_pred EEEEEeCCCCEEEEEeCC-----CeEEEEECCCCce
Confidence 334444566677777754 3578899887653
No 165
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=88.04 E-value=8.7 Score=36.90 Aligned_cols=107 Identities=10% Similarity=0.007 Sum_probs=57.1
Q ss_pred CCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCcCceEEEECCC
Q 008611 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLET 332 (559)
Q Consensus 255 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t 332 (559)
++.+++.|+.++ .+.+||+.+.+-...-. .......+..+ ++..++.|+.+ ..+.+||+.+
T Consensus 43 ~~~~l~~~~~dg------~i~vwd~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~s~~~d------g~i~iwd~~~ 105 (369)
T 3zwl_B 43 EGDLLFSCSKDS------SASVWYSLNGERLGTLD-----GHTGTIWSIDVDCFTKYCVTGSAD------YSIKLWDVSN 105 (369)
T ss_dssp TSCEEEEEESSS------CEEEEETTTCCEEEEEC-----CCSSCEEEEEECTTSSEEEEEETT------TEEEEEETTT
T ss_pred CCCEEEEEeCCC------EEEEEeCCCchhhhhhh-----hcCCcEEEEEEcCCCCEEEEEeCC------CeEEEEECCC
Confidence 556777776543 48888988776443321 11111222222 45666777653 3588999988
Q ss_pred CceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCC
Q 008611 333 MTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQT 383 (559)
Q Consensus 333 ~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~ 383 (559)
.+....-.. ...-.++....++..+++++.........+.+||+.+
T Consensus 106 ~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~ 151 (369)
T 3zwl_B 106 GQCVATWKS-----PVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIER 151 (369)
T ss_dssp CCEEEEEEC-----SSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEE
T ss_pred CcEEEEeec-----CCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecC
Confidence 765443221 1122334444455566666543222234577777654
No 166
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=88.03 E-value=30 Score=36.69 Aligned_cols=126 Identities=15% Similarity=0.142 Sum_probs=68.0
Q ss_pred eeEEEECCEEEEEccCCCCcccCcEEEEEcCCC--eEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCC
Q 008611 189 HGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSW--AWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTK 266 (559)
Q Consensus 189 ~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~ 266 (559)
.+-++.++.||+.+.. +.++++|..|+ .|+.-..... ...+.......+.+..++.||+...
T Consensus 62 ~~P~v~~g~vyv~~~~------~~v~AlD~~tG~~~W~~~~~~~~-------~~~~~~~~~~~g~a~~~~~v~~~t~--- 125 (582)
T 1flg_A 62 SQAIVSDGVIYVTASY------SRLFALDAKTGKRLWTYNHRLPD-------DIRPCCDVVNRGAAIYGDKVFFGTL--- 125 (582)
T ss_dssp CCCEEETTEEEEEETT------TEEEEEESSSCCEEEEEECCCCT-------TCCCSSCSCCCCCEEETTEEEEEET---
T ss_pred eccEEECCEEEEEcCC------CCEEEEECCCCcEEEEEcCCCCc-------ccccccccCCCccEEECCEEEEEeC---
Confidence 3446789999998762 23999999886 4876432210 0000000112344567888887532
Q ss_pred CCCCcceEEEEECCCCe--EEEeccCCCCCCCc--cceEEEEECC------EEEEEcCcCCCCCCcCceEEEECCCC--c
Q 008611 267 DPSEIIQVKVFDLQTCS--WSTLKTYGKPPVSR--GGQSVTLVGT------SLVIFGGEDAKRSLLNDLHILDLETM--T 334 (559)
Q Consensus 267 ~~~~~~~v~~yd~~t~~--W~~~~~~g~~p~~r--~~~~~~~~~~------~lyv~GG~~~~~~~~~~~~~yd~~t~--~ 334 (559)
...++.+|..+++ |+.-... +... ...+-++.++ .|| +|...........++.||+.|. .
T Consensus 126 ----dg~l~AlD~~TG~~~W~~~~~~---~~~~~~~~~sP~v~~~~~~G~~~v~-vg~~~~e~~~~g~v~alD~~tG~~~ 197 (582)
T 1flg_A 126 ----DASVVALNKNTGKVVWKKKFAD---HGAGYTMTGAPTIVKDGKTGKVLLI-HGSSGDEFGVVGRLFARDPDTGEEI 197 (582)
T ss_dssp ----TTEEEEEESSSCCEEEEEECSC---GGGTCBCCSCCEEEECTTTCCEEEE-ECCBCGGGCCBCEEEEECTTTCCEE
T ss_pred ----CCEEEEEECCCCCEEeeecCCC---CCcCcccccCCEEeCCCcCCcEEEE-EeccccccCCCCEEEEEECCCCCEE
Confidence 2469999998875 8765311 1110 1112233444 454 4432111112356999999876 4
Q ss_pred eEEe
Q 008611 335 WDEI 338 (559)
Q Consensus 335 W~~~ 338 (559)
|+..
T Consensus 198 W~~~ 201 (582)
T 1flg_A 198 WMRP 201 (582)
T ss_dssp EEEE
T ss_pred eecC
Confidence 8654
No 167
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=87.97 E-value=0.67 Score=34.00 Aligned_cols=45 Identities=7% Similarity=0.015 Sum_probs=28.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhH
Q 008611 510 ETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDL 554 (559)
Q Consensus 510 ~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 554 (559)
.+.|..++...+|+.+.+..+++.+.++.+++.++.+++.++..+
T Consensus 22 ~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 22 RDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555666666666666666666666666666666666665443
No 168
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=87.91 E-value=9.6 Score=40.79 Aligned_cols=149 Identities=11% Similarity=0.033 Sum_probs=82.4
Q ss_pred CcEEEEEcC-CC---eEEEeeeccccCCCCCCCCCCCCCCccceeEEe--CCEEEEEeccCCCCCCcceEEEEECCCCeE
Q 008611 211 SDMHILDLR-SW---AWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHTKDPSEIIQVKVFDLQTCSW 284 (559)
Q Consensus 211 ~~v~~yd~~-t~---~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W 284 (559)
.+++++|+. ++ ....+... .. .......+ +|++|+.+..+. ...++.+|+.+.++
T Consensus 217 ~~i~~~d~~~~g~~~~~~~l~~~--------------~~-~~~~~~~~spdg~l~~~~~~~~----~~~l~~~~~~~~~~ 277 (662)
T 3azo_A 217 TELKTARVTEDGRFADTRTLLGG--------------PE-EAIAQAEWAPDGSLIVATDRTG----WWNLHRVDPATGAA 277 (662)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEE--------------TT-BCEEEEEECTTSCEEEEECTTS----SCEEEEECTTTCCE
T ss_pred cEEEEEEECCCCcccccEEeCCC--------------CC-ceEcceEECCCCeEEEEECCCC----CeEEEEEECCCCce
Confidence 579999999 57 44444221 01 11122222 677777665432 34799999989999
Q ss_pred EEeccCCC-C--CCCcc-ceEEEEE-CCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccccEEEEEcCC
Q 008611 285 STLKTYGK-P--PVSRG-GQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAER 359 (559)
Q Consensus 285 ~~~~~~g~-~--p~~r~-~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~ 359 (559)
..+..... . |.-.. ...++.. ++++++.+.. + ...+|.+|+.+.....+... ... ........++
T Consensus 278 ~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~----~~~l~~~d~~~~~~~~l~~~----~~~-~~~~~s~~~~ 347 (662)
T 3azo_A 278 TQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-G----AAVLGILDPESGELVDAAGP----WTE-WAATLTVSGT 347 (662)
T ss_dssp EESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-S----SCEEEEEETTTTEEEECCSS----CCE-EEEEEEEETT
T ss_pred eecccccccccCccccccCceEeEeCCCEEEEEEEc-C----ccEEEEEECCCCcEEEecCC----CCe-EEEEEecCCC
Confidence 88753210 0 10000 1223333 5677766654 2 35689999988887766421 111 1122133455
Q ss_pred EEEEEcCCCCCCCcCceEEEECCCCeeEecc
Q 008611 360 YLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (559)
Q Consensus 360 ~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~~ 390 (559)
.+++..+.. .....+|.+|+.+.+...+.
T Consensus 348 ~~~~~~~~~--~~~~~i~~~d~~~g~~~~l~ 376 (662)
T 3azo_A 348 RAVGVAASP--RTAYEVVELDTVTGRARTIG 376 (662)
T ss_dssp EEEEEEEET--TEEEEEEEEETTTCCEEEEE
T ss_pred EEEEEEcCC--CCCCEEEEEECCCCceEEee
Confidence 555554322 12347999999888877763
No 169
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=87.86 E-value=4.8 Score=44.53 Aligned_cols=148 Identities=8% Similarity=0.036 Sum_probs=84.0
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEE-eCCEEEEEeccCCCCCCcce
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIP-WENKLLSIAGHTKDPSEIIQ 273 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~ 273 (559)
++.|++-.- ..-+++||+.+.++....... ..+.... .+++. -++.|++-.. ..
T Consensus 505 ~g~lWigt~------~~Gl~~~~~~~~~~~~~~~~~----------~l~~~~i-~~i~~d~~g~lWi~T~--------~G 559 (781)
T 3v9f_A 505 EGRFWIGTF------GGGVGIYTPDMQLVRKFNQYE----------GFCSNTI-NQIYRSSKGQMWLATG--------EG 559 (781)
T ss_dssp TCCEEEEES------SSCEEEECTTCCEEEEECTTT----------TCSCSCE-EEEEECTTSCEEEEET--------TE
T ss_pred CCCEEEEEc------CCCEEEEeCCCCeEEEccCCC----------CCCCCee-EEEEECCCCCEEEEEC--------CC
Confidence 456666431 134899999999988774311 1111111 12222 2567777432 24
Q ss_pred E-EEEECCCCeEEEeccCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccc-
Q 008611 274 V-KVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSD- 350 (559)
Q Consensus 274 v-~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~- 350 (559)
+ .+||+.+.++........+|.... .+++.. ++.|++.+. +.+.+||+.+.++.......-.+...+.
T Consensus 560 lv~~~d~~~~~~~~~~~~~gl~~~~i-~~i~~d~~g~lW~~t~--------~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~ 630 (781)
T 3v9f_A 560 LVCFPSARNFDYQVFQRKEGLPNTHI-RAISEDKNGNIWASTN--------TGISCYITSKKCFYTYDHSNNIPQGSFIS 630 (781)
T ss_dssp EEEESCTTTCCCEEECGGGTCSCCCC-CEEEECSSSCEEEECS--------SCEEEEETTTTEEEEECGGGTCCSSCEEE
T ss_pred ceEEECCCCCcEEEccccCCCCCceE-EEEEECCCCCEEEEcC--------CceEEEECCCCceEEecccCCcccccccc
Confidence 5 889999998888754333443333 233333 567887642 3489999999999887643333443332
Q ss_pred cEEEEEcCCEEEEEcCCCCCCCcCceEEEECCC
Q 008611 351 HAAAVHAERYLLIFGGGSHAACFNDLHVLDLQT 383 (559)
Q Consensus 351 ~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~ 383 (559)
.+++...++ -+.|||. +.+.+||+..
T Consensus 631 ~~~~~~~~G-~l~~g~~------~Gl~~f~p~~ 656 (781)
T 3v9f_A 631 GCVTKDHNG-LIYFGSI------NGLCFFNPDI 656 (781)
T ss_dssp EEEEECTTS-CEEEEET------TEEEEECSCC
T ss_pred CceEECCCC-EEEEECC------CceEEEChhh
Confidence 334444456 4555663 3477888764
No 170
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=87.85 E-value=4.9 Score=46.88 Aligned_cols=147 Identities=10% Similarity=0.105 Sum_probs=75.4
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCCCCCcceE
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQV 274 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v 274 (559)
++..+++|+.+ ..+.+||+.++........ ........+..-++..++.||.++ .+
T Consensus 972 ~g~~l~~g~~~-----g~i~i~d~~~~~~~~~~~~-------------h~~~v~~l~~s~dg~~l~s~~~dg------~i 1027 (1249)
T 3sfz_A 972 HLEYVAFGDED-----GAIKIIELPNNRVFSSGVG-------------HKKAVRHIQFTADGKTLISSSEDS------VI 1027 (1249)
T ss_dssp TSSEEEEEETT-----SCCEEEETTTTSCEEECCC-------------CSSCCCCEEECSSSSCEEEECSSS------BE
T ss_pred CCCEEEEEcCC-----CCEEEEEcCCCceeeeccc-------------CCCceEEEEECCCCCEEEEEcCCC------EE
Confidence 45566666533 3578888877654332110 111112222223667777777643 58
Q ss_pred EEEECCCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccccEEE
Q 008611 275 KVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAA 354 (559)
Q Consensus 275 ~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~ 354 (559)
..||+.++....+.. ....-.+++...+..++.|+.+ ..+.+||+.+.+-...-.. ....-.+++
T Consensus 1028 ~vwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~l~~~~~d------g~v~vwd~~~~~~~~~~~~----~~~~v~~~~ 1092 (1249)
T 3sfz_A 1028 QVWNWQTGDYVFLQA-----HQETVKDFRLLQDSRLLSWSFD------GTVKVWNVITGRIERDFTC----HQGTVLSCA 1092 (1249)
T ss_dssp EEEETTTTEEECCBC-----CSSCEEEEEECSSSEEEEEESS------SEEEEEETTTTCCCEEEEC----CSSCCCCEE
T ss_pred EEEECCCCceEEEec-----CCCcEEEEEEcCCCcEEEEECC------CcEEEEECCCCceeEEEcc----cCCcEEEEE
Confidence 899999987664431 1111222333344445555543 3588899877654322111 111122344
Q ss_pred EEcCCEEEEEcCCCCCCCcCceEEEECCCCe
Q 008611 355 VHAERYLLIFGGGSHAACFNDLHVLDLQTME 385 (559)
Q Consensus 355 ~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~ 385 (559)
+..++..++.|+.+ ..+.+||+.+..
T Consensus 1093 ~s~d~~~l~s~s~d-----~~v~iwd~~~~~ 1118 (1249)
T 3sfz_A 1093 ISSDATKFSSTSAD-----KTAKIWSFDLLS 1118 (1249)
T ss_dssp ECSSSSSCEEECCS-----SCCCEECSSSSS
T ss_pred ECCCCCEEEEEcCC-----CcEEEEECCCcc
Confidence 44455577777654 246677776543
No 171
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=87.58 E-value=23 Score=34.92 Aligned_cols=106 Identities=16% Similarity=0.216 Sum_probs=59.1
Q ss_pred CCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEEEECCCC
Q 008611 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETM 333 (559)
Q Consensus 255 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~ 333 (559)
++.+++.|+.+. .+.++|+.+.+-...-. + . ...-.+++.. ++..++.|+.+ ..+.+||+.+.
T Consensus 134 dg~~l~s~~~d~------~i~iwd~~~~~~~~~~~-~--h-~~~v~~~~~~p~~~~l~s~s~d------~~v~iwd~~~~ 197 (393)
T 1erj_A 134 DGKFLATGAEDR------LIRIWDIENRKIVMILQ-G--H-EQDIYSLDYFPSGDKLVSGSGD------RTVRIWDLRTG 197 (393)
T ss_dssp TSSEEEEEETTS------CEEEEETTTTEEEEEEC-C--C-SSCEEEEEECTTSSEEEEEETT------SEEEEEETTTT
T ss_pred CCCEEEEEcCCC------eEEEEECCCCcEEEEEc-c--C-CCCEEEEEEcCCCCEEEEecCC------CcEEEEECCCC
Confidence 677788887654 48899998876543321 1 1 1111222222 44566666653 35788899887
Q ss_pred ceEEecCCCCCCCcccccEEEEEc-CCEEEEEcCCCCCCCcCceEEEECCCCee
Q 008611 334 TWDEIDAVGVPPSPRSDHAAAVHA-ERYLLIFGGGSHAACFNDLHVLDLQTMEW 386 (559)
Q Consensus 334 ~W~~~~~~~~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~dv~~~d~~~~~W 386 (559)
.....-.. ...-.++++.. ++.+++.|+.+ ..+.+||+.+..-
T Consensus 198 ~~~~~~~~-----~~~v~~~~~~~~~~~~l~~~s~d-----~~v~iwd~~~~~~ 241 (393)
T 1erj_A 198 QCSLTLSI-----EDGVTTVAVSPGDGKYIAAGSLD-----RAVRVWDSETGFL 241 (393)
T ss_dssp EEEEEEEC-----SSCEEEEEECSTTCCEEEEEETT-----SCEEEEETTTCCE
T ss_pred eeEEEEEc-----CCCcEEEEEECCCCCEEEEEcCC-----CcEEEEECCCCcE
Confidence 65433211 11122333333 55577777754 3478899887653
No 172
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=87.42 E-value=0.48 Score=33.74 Aligned_cols=54 Identities=22% Similarity=0.159 Sum_probs=46.0
Q ss_pred cCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 505 ISKHPETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 505 ~~~~~~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
+..++.+++++|.+|..-..++..+|..-..-+.+|+.+..-.++.+..|+|.+
T Consensus 8 L~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~k~~ 61 (74)
T 2q6q_A 8 LNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEKKL 61 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhc
Confidence 445667888889999999999999999999999999999998888888888765
No 173
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=87.41 E-value=20 Score=34.14 Aligned_cols=152 Identities=12% Similarity=0.183 Sum_probs=76.0
Q ss_pred CEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe--C---CEEEEEeccCCCCCC
Q 008611 196 DKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--E---NKLLSIAGHTKDPSE 270 (559)
Q Consensus 196 ~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~---~~lyv~GG~~~~~~~ 270 (559)
..+++.|+... .-..+.+||+.++......... . ...-.++.+ + +.+++.|+.++
T Consensus 31 ~~l~~~~s~~~--~d~~v~iw~~~~~~~~~~~~~~-------------~-~~~v~~~~~~~~~~~~~~l~~~~~dg---- 90 (357)
T 3i2n_A 31 AKFVTMGNFAR--GTGVIQLYEIQHGDLKLLREIE-------------K-AKPIKCGTFGATSLQQRYLATGDFGG---- 90 (357)
T ss_dssp SEEEEEEC--C--CCEEEEEEEECSSSEEEEEEEE-------------E-SSCEEEEECTTCCTTTCCEEEEETTS----
T ss_pred ceEEEecCccC--CCcEEEEEeCCCCcccceeeec-------------c-cCcEEEEEEcCCCCCCceEEEecCCC----
Confidence 36666775311 1246889999888776553321 0 011122223 2 47777777643
Q ss_pred cceEEEEECCCCe--EEEeccCCCCCCCccceEEEE-------ECCEEEEEcCcCCCCCCcCceEEEECCCCc--eEEec
Q 008611 271 IIQVKVFDLQTCS--WSTLKTYGKPPVSRGGQSVTL-------VGTSLVIFGGEDAKRSLLNDLHILDLETMT--WDEID 339 (559)
Q Consensus 271 ~~~v~~yd~~t~~--W~~~~~~g~~p~~r~~~~~~~-------~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~ 339 (559)
.+..||+.+.+ -..+.. ...+. .++.. -++.+++.|+.+ ..+.+||+.+.. ...+.
T Consensus 91 --~i~iwd~~~~~~~~~~~~~---~~~~v--~~~~~~~~~~~s~~~~~l~~~~~d------~~i~vwd~~~~~~~~~~~~ 157 (357)
T 3i2n_A 91 --NLHIWNLEAPEMPVYSVKG---HKEII--NAIDGIGGLGIGEGAPEIVTGSRD------GTVKVWDPRQKDDPVANME 157 (357)
T ss_dssp --CEEEECTTSCSSCSEEECC---CSSCE--EEEEEESGGGCC-CCCEEEEEETT------SCEEEECTTSCSSCSEEEC
T ss_pred --eEEEEeCCCCCccEEEEEe---cccce--EEEeeccccccCCCccEEEEEeCC------CeEEEEeCCCCCCcceecc
Confidence 48888887664 222210 11111 11111 245566777654 347889987754 34443
Q ss_pred CCCCCCCcccccEEE----EEcCCEEEEEcCCCCCCCcCceEEEECCCCee
Q 008611 340 AVGVPPSPRSDHAAA----VHAERYLLIFGGGSHAACFNDLHVLDLQTMEW 386 (559)
Q Consensus 340 ~~~~~p~~r~~~~~~----~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W 386 (559)
... ....+.-.+++ ...++.+++.|+.+ ..+.+||+.+..-
T Consensus 158 ~~~-~~~~~~v~~~~~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~ 202 (357)
T 3i2n_A 158 PVQ-GENKRDCWTVAFGNAYNQEERVVCAGYDN-----GDIKLFDLRNMAL 202 (357)
T ss_dssp CCT-TSCCCCEEEEEEECCCC-CCCEEEEEETT-----SEEEEEETTTTEE
T ss_pred ccC-CCCCCceEEEEEEeccCCCCCEEEEEccC-----CeEEEEECccCce
Confidence 211 11111222222 11345577777643 4688999988764
No 174
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=87.32 E-value=16 Score=34.91 Aligned_cols=145 Identities=10% Similarity=0.080 Sum_probs=72.1
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeE---EeCCEEEEEeccCCCCCCc
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLI---PWENKLLSIAGHTKDPSEI 271 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~---~~~~~lyv~GG~~~~~~~~ 271 (559)
++.+++.|+.+ ..+.+||+.+.....+... .... .++. .-++.+++.|+.+.
T Consensus 97 ~~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~~--------------~~~v-~~~~~~~~~~~~~l~~~~~dg----- 151 (368)
T 3mmy_A 97 DGSKVFTASCD-----KTAKMWDLSSNQAIQIAQH--------------DAPV-KTIHWIKAPNYSCVMTGSWDK----- 151 (368)
T ss_dssp TSSEEEEEETT-----SEEEEEETTTTEEEEEEEC--------------SSCE-EEEEEEECSSCEEEEEEETTS-----
T ss_pred CCCEEEEEcCC-----CcEEEEEcCCCCceeeccc--------------cCce-EEEEEEeCCCCCEEEEccCCC-----
Confidence 45566666633 3688999998876654321 1111 1222 22567788877643
Q ss_pred ceEEEEECCCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCccccc
Q 008611 272 IQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDH 351 (559)
Q Consensus 272 ~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~ 351 (559)
.+..||+.+.+-...-. .+ ....++....+.+++.++ .+.+.+||+....-...... .+......
T Consensus 152 -~i~vwd~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~~~~~~--~~~~~~~~ 216 (368)
T 3mmy_A 152 -TLKFWDTRSSNPMMVLQ---LP--ERCYCADVIYPMAVVATA-------ERGLIVYQLENQPSEFRRIE--SPLKHQHR 216 (368)
T ss_dssp -EEEEECSSCSSCSEEEE---CS--SCEEEEEEETTEEEEEEG-------GGCEEEEECSSSCEEEEECC--CSCSSCEE
T ss_pred -cEEEEECCCCcEEEEEe---cC--CCceEEEecCCeeEEEeC-------CCcEEEEEeccccchhhhcc--ccccCCCc
Confidence 58889987765222211 11 122333344555554443 23477888865532222111 12222222
Q ss_pred EEEEEcCC----EEEEEcCCCCCCCcCceEEEECCCC
Q 008611 352 AAAVHAER----YLLIFGGGSHAACFNDLHVLDLQTM 384 (559)
Q Consensus 352 ~~~~~~~~----~l~v~GG~~~~~~~~dv~~~d~~~~ 384 (559)
+..+..+. ..++.|+.+ ..+.+||+...
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~d-----g~i~i~~~~~~ 248 (368)
T 3mmy_A 217 CVAIFKDKQNKPTGFALGSIE-----GRVAIHYINPP 248 (368)
T ss_dssp EEEEEECTTSCEEEEEEEETT-----SEEEEEESSCS
T ss_pred eEEEcccCCCCCCeEEEecCC-----CcEEEEecCCC
Confidence 23332221 236666543 35778887664
No 175
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=87.32 E-value=15 Score=36.62 Aligned_cols=105 Identities=10% Similarity=0.140 Sum_probs=53.6
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCCCCCcceE
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQV 274 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v 274 (559)
++.+++.|+.+ ..+.++|+.+++-... .. .......++..++.+++.|+.+. .+
T Consensus 158 dg~~lasgs~D-----g~v~iWd~~~~~~~~~--~~-------------~h~~~v~~~s~~~~~l~sgs~d~------~i 211 (420)
T 4gga_A 158 EGNYLAVGTSS-----AEVQLWDVQQQKRLRN--MT-------------SHSARVGSLSWNSYILSSGSRSG------HI 211 (420)
T ss_dssp TSSEEEEEETT-----SCEEEEETTTTEEEEE--EC-------------CCSSCEEEEEEETTEEEEEETTS------EE
T ss_pred CCCEEEEEECC-----CeEEEEEcCCCcEEEE--Ee-------------CCCCceEEEeeCCCEEEEEeCCC------ce
Confidence 45677777743 3588899888764332 21 11122334556778888887643 46
Q ss_pred EEEECCCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCC
Q 008611 275 KVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETM 333 (559)
Q Consensus 275 ~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~ 333 (559)
..+|............+ .............+..++.|+.++ .+.++|..+.
T Consensus 212 ~~~d~~~~~~~~~~~~~--h~~~~~~~~~~~~g~~l~s~~~D~------~v~i~~~~~~ 262 (420)
T 4gga_A 212 HHHDVRVAEHHVATLSG--HSQEVCGLRWAPDGRHLASGGNDN------LVNVWPSAPG 262 (420)
T ss_dssp EEEETTSSSCEEEEEEC--CSSCEEEEEECTTSSEEEEEETTS------CEEEEESSCC
T ss_pred eEeeecccceeeEEecc--cccceeeeeecCCCCeeeeeeccc------cceEEeeccc
Confidence 77776654432221111 111111111112455666666543 3667776554
No 176
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=87.24 E-value=0.71 Score=49.21 Aligned_cols=70 Identities=21% Similarity=0.303 Sum_probs=53.2
Q ss_pred ccCCCChhhHHHHhhheeeeecCCCCCCC--CCCCC---hh-----h-----hhhH-----HHHhcCCCCCHHHHHHHHH
Q 008611 36 LTSKFSNDSALLLYALYQQATVGPCNVPK--PSSWS---PV-----E-----QSKW-----KSWQGLGNMATTEAMRLFV 95 (559)
Q Consensus 36 ~~~~~~~~~~l~ly~l~kqa~~g~~~~~~--p~~~~---~~-----~-----~~k~-----~aw~~~~~~s~~~a~~~yv 95 (559)
+..+.+.++.+.|=||--||.+||++... |++++ +. . ...| ..|+++.|||+.+|+..|+
T Consensus 113 G~l~c~~e~a~~LAAL~lQae~GDy~~~~~~~~yl~~~~~lP~~vl~~~~~s~e~~~~~I~~~hk~l~G~s~~eA~~~yL 192 (575)
T 2i1j_A 113 DEIYCPPETSVLLASYAVQARHGDHNPAVHGPGFLANDRLLPQRVTDQHKMSREEWEQSITNWWQEHRGMLREDAMMEYL 192 (575)
T ss_dssp TSSCCCHHHHHHHHHHHHHHHHCSCCTTTCCTTTTTTCCCSCHHHHHTBCCCHHHHHHHHHHHHGGGTTCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCChhhcccccccccccCCHHHHhhcCCCHHHHHHHHHHHHHHccCCCHHHHHHHHH
Confidence 35578899999999999999999998653 44431 11 1 1234 5699999999999999999
Q ss_pred HHHHHhCCCcc
Q 008611 96 KILEEEDPGWY 106 (559)
Q Consensus 96 ~~~~~~~~~~~ 106 (559)
+++.++ |.|.
T Consensus 193 ~~a~~l-p~YG 202 (575)
T 2i1j_A 193 KIAQDL-EMYG 202 (575)
T ss_dssp HHHTTS-TTTT
T ss_pred HHHHhc-cccC
Confidence 999864 6554
No 177
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=87.20 E-value=27 Score=35.18 Aligned_cols=109 Identities=15% Similarity=0.140 Sum_probs=56.4
Q ss_pred CCEEEEEeccCCCCCCcceEEEEECCCCeEEE-eccCCCCCCCccc-eEEE-EEC---CEEEEEcCcCCCCCCcCceEEE
Q 008611 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWST-LKTYGKPPVSRGG-QSVT-LVG---TSLVIFGGEDAKRSLLNDLHIL 328 (559)
Q Consensus 255 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~-~~~~g~~p~~r~~-~~~~-~~~---~~lyv~GG~~~~~~~~~~~~~y 328 (559)
++..++.|+.+ ..++.+++.+..... ... .+...... .+++ .-+ +.+++.|+.+ ..|.+|
T Consensus 160 ~~~~l~~~~~~------g~v~~~~~~~~~~~~~~~~--~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d------~~i~vw 225 (450)
T 2vdu_B 160 DDTTVIIADKF------GDVYSIDINSIPEEKFTQE--PILGHVSMLTDVHLIKDSDGHQFIITSDRD------EHIKIS 225 (450)
T ss_dssp TSSEEEEEETT------SEEEEEETTSCCCSSCCCC--CSEECSSCEEEEEEEECTTSCEEEEEEETT------SCEEEE
T ss_pred CCCEEEEEeCC------CcEEEEecCCcccccccce--eeecccCceEEEEEcCCCCCCcEEEEEcCC------CcEEEE
Confidence 56677777653 357888877654321 000 00000111 1222 235 6788888764 358888
Q ss_pred ECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCee
Q 008611 329 DLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEW 386 (559)
Q Consensus 329 d~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W 386 (559)
|+.+.........+ ....-.++++. ++.+++.|+.+ ..|.+||+.+...
T Consensus 226 d~~~~~~~~~~~~~---h~~~v~~~~~s-d~~~l~s~~~d-----~~v~vwd~~~~~~ 274 (450)
T 2vdu_B 226 HYPQCFIVDKWLFG---HKHFVSSICCG-KDYLLLSAGGD-----DKIFAWDWKTGKN 274 (450)
T ss_dssp EESCTTCEEEECCC---CSSCEEEEEEC-STTEEEEEESS-----SEEEEEETTTCCE
T ss_pred ECCCCceeeeeecC---CCCceEEEEEC-CCCEEEEEeCC-----CeEEEEECCCCcE
Confidence 98776544331111 11111233333 44466677643 4688999887653
No 178
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=87.19 E-value=21 Score=34.16 Aligned_cols=107 Identities=14% Similarity=0.123 Sum_probs=58.4
Q ss_pred CEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCcCceEEEECCCC
Q 008611 256 NKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETM 333 (559)
Q Consensus 256 ~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~ 333 (559)
+.+++.|+.++ .+.+||+.+.+-...-. ... ..-.++... ++.+++.|+.+ ..+.+||+.+.
T Consensus 85 ~~~l~~~~~dg------~i~v~d~~~~~~~~~~~--~~~--~~i~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~ 148 (366)
T 3k26_A 85 HPLLAVAGSRG------IIRIINPITMQCIKHYV--GHG--NAINELKFHPRDPNLLLSVSKD------HALRLWNIQTD 148 (366)
T ss_dssp CEEEEEEETTC------EEEEECTTTCCEEEEEE--SCC--SCEEEEEECSSCTTEEEEEETT------SCEEEEETTTT
T ss_pred CCEEEEecCCC------EEEEEEchhceEeeeec--CCC--CcEEEEEECCCCCCEEEEEeCC------CeEEEEEeecC
Confidence 57888887643 58889988765433211 011 111122222 45777777754 34889999877
Q ss_pred ceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCC
Q 008611 334 TWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTM 384 (559)
Q Consensus 334 ~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~ 384 (559)
+-...-.. .......-.+++...++..++.|+.+ ..+.+||+.+.
T Consensus 149 ~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~ 193 (366)
T 3k26_A 149 TLVAIFGG-VEGHRDEVLSADYDLLGEKIMSCGMD-----HSLKLWRINSK 193 (366)
T ss_dssp EEEEEECS-TTSCSSCEEEEEECTTSSEEEEEETT-----SCEEEEESCSH
T ss_pred eEEEEecc-cccccCceeEEEECCCCCEEEEecCC-----CCEEEEECCCC
Confidence 65443210 01122222344444455567777653 35888898764
No 179
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=87.15 E-value=13 Score=39.21 Aligned_cols=108 Identities=15% Similarity=0.158 Sum_probs=57.1
Q ss_pred cceEEEEECCCCeEEEeccCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEEEECCCC-----ceEEecCCCCC
Q 008611 271 IIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETM-----TWDEIDAVGVP 344 (559)
Q Consensus 271 ~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~-----~W~~~~~~~~~ 344 (559)
.+.+.++|+.+++-...-..+..|.+-.+.....- ++.+|+.+... -+.|-++|..+. .|+.+.....
T Consensus 345 ~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~-----d~~V~v~d~~~~~~~~~~~~~v~~l~~- 418 (543)
T 1nir_A 345 SNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLG-----DGSISLIGTDPKNHPQYAWKKVAELQG- 418 (543)
T ss_dssp GTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSS-----SSEEEEEECCTTTCTTTBTSEEEEEEC-
T ss_pred CCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCC-----CceEEEEEeCCCCCchhcCeEEEEEEc-
Confidence 35788999999986655444455544333332222 35788776432 245788888762 2765543310
Q ss_pred CCcccccEEEEEcC-CEEEEEcCCCC-CCCcCceEEEECCCCe
Q 008611 345 PSPRSDHAAAVHAE-RYLLIFGGGSH-AACFNDLHVLDLQTME 385 (559)
Q Consensus 345 p~~r~~~~~~~~~~-~~l~v~GG~~~-~~~~~dv~~~d~~~~~ 385 (559)
.+.....+....+ .+||+-.-.+. ....+.|.+||+.+.+
T Consensus 419 -~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~ 460 (543)
T 1nir_A 419 -QGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLD 460 (543)
T ss_dssp -SCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred -CCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCC
Confidence 1111122334444 45555321111 1124579999998765
No 180
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=86.41 E-value=1.3 Score=32.96 Aligned_cols=49 Identities=16% Similarity=0.232 Sum_probs=40.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 510 ETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 510 ~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
.+....+.++..|+.+.+.+|.....++..|+++++..+..+..|.-||
T Consensus 29 ~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 29 RHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4444458888889999999999999999999999999998887776654
No 181
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=86.33 E-value=10 Score=41.19 Aligned_cols=179 Identities=8% Similarity=-0.032 Sum_probs=92.1
Q ss_pred ECCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe--CCEEEEEeccCCCCCCc
Q 008611 194 VQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHTKDPSEI 271 (559)
Q Consensus 194 ~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~ 271 (559)
.|+++|.+-- ..+.....+|+.+.....|+.+-..... ..........+.+ +|+.++|.-... +...
T Consensus 78 dG~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~l~d~~~~---------a~~~~~~~~~~~~SPDG~~la~~~~~~-G~~~ 146 (695)
T 2bkl_A 78 RNGRFFYVRT-HKDKEKAILYWRQGESGQEKVLLDPNGW---------SKDGTVSLGTWAVSWDGKKVAFAQKPN-AADE 146 (695)
T ss_dssp ETTEEEEEEE-CTTCSSCEEEEEESTTSCCEEEECGGGS---------SSSSCEEEEEEEECTTSSEEEEEEEET-TCSC
T ss_pred ECCEEEEEEE-cCCCeEEEEEEEcCCCCCcEEEEchHHh---------ccCCCEEEEEEEECCCCCEEEEEECCC-CCce
Confidence 4677766532 2233456789999888888877442200 0000011122222 666666554322 2334
Q ss_pred ceEEEEECCCCeEEEeccCCCCCCCccceEEEEE-CCEEEEEcCcCCCC-------CCcCceEEEECCCCce--EEecCC
Q 008611 272 IQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKR-------SLLNDLHILDLETMTW--DEIDAV 341 (559)
Q Consensus 272 ~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~-------~~~~~~~~yd~~t~~W--~~~~~~ 341 (559)
..++++|+.+++.... ...+.... ..++.. +++.++++..+... .....|+++++.+..- ..+...
T Consensus 147 ~~i~v~dl~tg~~~~~---~~~~~~~~-~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~ 222 (695)
T 2bkl_A 147 AVLHVIDVDSGEWSKV---DVIEGGKY-ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHER 222 (695)
T ss_dssp CEEEEEETTTCCBCSS---CCBSCCTT-CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECC
T ss_pred EEEEEEECCCCCCcCC---cccCcccc-cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEec
Confidence 6899999999886311 11221111 223333 55666666553321 1245699999988763 233221
Q ss_pred CCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEecc
Q 008611 342 GVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (559)
Q Consensus 342 ~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~~ 390 (559)
...+....+.....++..++++..... ..+++|++|..+..|..+.
T Consensus 223 --~~~~~~~~~~~~SpDG~~l~~~~~~~~-~~~~l~~~~~~~~~~~~l~ 268 (695)
T 2bkl_A 223 --TGDPTTFLQSDLSRDGKYLFVYILRGW-SENDVYWKRPGEKDFRLLV 268 (695)
T ss_dssp --CCCTTCEEEEEECTTSCCEEEEEEETT-TEEEEEEECTTCSSCEEEE
T ss_pred --CCCCEEEEEEEECCCCCEEEEEEeCCC-CceEEEEEcCCCCceEEee
Confidence 112233334444445544444432221 3457899988777788774
No 182
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=86.28 E-value=14 Score=40.41 Aligned_cols=150 Identities=13% Similarity=0.076 Sum_probs=81.8
Q ss_pred ccCcEEEEEcCCC--e-EEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCCCCCcceEEEEECCC--Ce
Q 008611 209 YLSDMHILDLRSW--A-WSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQT--CS 283 (559)
Q Consensus 209 ~~~~v~~yd~~t~--~-W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t--~~ 283 (559)
..++++++|+.+. . |..+.... ... .......++.||+..... .....++.+|+.+ ..
T Consensus 292 ~~~~l~~~d~~~~~~~~~~~l~~~~-------------~~~-~~~~~~dg~~l~~~s~~~---~~~~~l~~~d~~~~~~~ 354 (741)
T 1yr2_A 292 PVNTVHVARVTNGKIGPVTALIPDL-------------KAQ-WDFVDGVGDQLWFVSGDG---APLKKIVRVDLSGSTPR 354 (741)
T ss_dssp SCCEEEEEEEETTEECCCEEEECSS-------------SSC-EEEEEEETTEEEEEECTT---CTTCEEEEEECSSSSCE
T ss_pred CcceEEEEECCCCCCcccEEecCCC-------------Cce-EEEEeccCCEEEEEECCC---CCCCEEEEEeCCCCccc
Confidence 3568999999887 6 87774321 111 112223466777775432 2346799999988 57
Q ss_pred EEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccccEEEEEc-CCEEE
Q 008611 284 WSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHA-ERYLL 362 (559)
Q Consensus 284 W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~-~~~l~ 362 (559)
|..+.+.. ... -..+...++.+++....++ ...++.+++....-..+.. |..........-. ++.|+
T Consensus 355 ~~~l~~~~--~~~--l~~~~~~~~~lv~~~~~dg----~~~l~~~~~~g~~~~~l~~----~~~~~v~~~~~s~d~~~l~ 422 (741)
T 1yr2_A 355 FDTVVPES--KDN--LESVGIAGNRLFASYIHDA----KSQVLAFDLDGKPAGAVSL----PGIGSASGLSGRPGDRHAY 422 (741)
T ss_dssp EEEEECCC--SSE--EEEEEEEBTEEEEEEEETT----EEEEEEEETTSCEEEECBC----SSSCEEEEEECCBTCSCEE
T ss_pred cEEEecCC--CCe--EEEEEEECCEEEEEEEECC----EEEEEEEeCCCCceeeccC----CCCeEEEEeecCCCCCEEE
Confidence 99886321 111 1123334778887766543 3468999986554444421 2111111111111 23233
Q ss_pred EE-cCCCCCCCcCceEEEECCCCeeEecc
Q 008611 363 IF-GGGSHAACFNDLHVLDLQTMEWSRPT 390 (559)
Q Consensus 363 v~-GG~~~~~~~~dv~~~d~~~~~W~~~~ 390 (559)
+. .+. ..-..++.||+.+.+...+.
T Consensus 423 ~~~ss~---~~P~~i~~~d~~tg~~~~l~ 448 (741)
T 1yr2_A 423 LSFSSF---TQPATVLALDPATAKTTPWE 448 (741)
T ss_dssp EEEEET---TEEEEEEEEETTTTEEEECS
T ss_pred EEEcCC---CCCCEEEEEECCCCcEEEEe
Confidence 32 221 12346999999988877664
No 183
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=86.25 E-value=1.8 Score=32.25 Aligned_cols=35 Identities=11% Similarity=0.271 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhH
Q 008611 520 KAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDL 554 (559)
Q Consensus 520 ~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 554 (559)
+......+.+|++.+.+++.|..+++.++.++.+|
T Consensus 37 r~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 37 RTDNQNFASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444555555555555555555555555544
No 184
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=86.21 E-value=27 Score=34.26 Aligned_cols=111 Identities=11% Similarity=0.108 Sum_probs=57.7
Q ss_pred CCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCC--CCCccc-eEEEE-ECCEEEEEcCcCCCCCCcCceEEEEC
Q 008611 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKP--PVSRGG-QSVTL-VGTSLVIFGGEDAKRSLLNDLHILDL 330 (559)
Q Consensus 255 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~--p~~r~~-~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~ 330 (559)
++..++.|+.+. .+..+|+.+..-...-..... ...... .+++. .++.+++.|+.+ ..+.+||+
T Consensus 260 ~~~~l~s~s~D~------~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d------g~i~vwd~ 327 (380)
T 3iz6_a 260 DGQRFGTGSDDG------TCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSN------GDCYVWDT 327 (380)
T ss_dssp TSSEEEEECSSS------CEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTT------SCEEEEET
T ss_pred CCCeEEEEcCCC------eEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECC------CCEEEEEC
Confidence 567788887654 488899988764433211000 000111 12222 256777777653 34889998
Q ss_pred CCCceEE-ecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCC
Q 008611 331 ETMTWDE-IDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQT 383 (559)
Q Consensus 331 ~t~~W~~-~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~ 383 (559)
.+..-.. +.... ......-.++++..++..++.||.+ ..+.+|++..
T Consensus 328 ~~~~~~~~~~~~~-~~h~~~v~~l~~s~dg~~l~sgs~D-----~~i~iW~~~~ 375 (380)
T 3iz6_a 328 LLAEMVLNLGTLQ-NSHEGRISCLGLSSDGSALCTGSWD-----KNLKIWAFSG 375 (380)
T ss_dssp TTCCEEEEECCSC-SSCCCCCCEEEECSSSSEEEEECTT-----SCEEEEECCS
T ss_pred CCCceEEEEeccc-CCCCCceEEEEECCCCCEEEEeeCC-----CCEEEEecCC
Confidence 7765432 21110 0111112344454566678888764 2366666654
No 185
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=86.18 E-value=1.3 Score=38.96 Aligned_cols=47 Identities=19% Similarity=0.270 Sum_probs=32.5
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhh
Q 008611 506 SKHPETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNT 552 (559)
Q Consensus 506 ~~~~~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~ 552 (559)
+++++.....|+.|..|...+.++|+..+.++++|+++++.++.+..
T Consensus 12 q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~ 58 (190)
T 4emc_A 12 KQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVK 58 (190)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 45566666778888888888888888888888888888888877763
No 186
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=86.16 E-value=19 Score=34.41 Aligned_cols=108 Identities=14% Similarity=0.112 Sum_probs=57.5
Q ss_pred CEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccccEEEEEc-CCEEEEEcCCCCCCCcCceEEEECCCCe
Q 008611 307 TSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHA-ERYLLIFGGGSHAACFNDLHVLDLQTME 385 (559)
Q Consensus 307 ~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~dv~~~d~~~~~ 385 (559)
+.+++.|+.+ ..+.+||+.+.+-...-. .....-.++.... ++.+++.|+.+ ..+.+||+.+..
T Consensus 85 ~~~l~~~~~d------g~i~v~d~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~ 149 (366)
T 3k26_A 85 HPLLAVAGSR------GIIRIINPITMQCIKHYV----GHGNAINELKFHPRDPNLLLSVSKD-----HALRLWNIQTDT 149 (366)
T ss_dssp CEEEEEEETT------CEEEEECTTTCCEEEEEE----SCCSCEEEEEECSSCTTEEEEEETT-----SCEEEEETTTTE
T ss_pred CCEEEEecCC------CEEEEEEchhceEeeeec----CCCCcEEEEEECCCCCCEEEEEeCC-----CeEEEEEeecCe
Confidence 4677777754 358889988765432211 1112223344443 45577777753 358899998775
Q ss_pred eEeccCCCCCCCCccccEEEEECCceecceeeeeeccCCCcEEEEEcCcCCCCcccEEEEeCCCc
Q 008611 386 WSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSHK 450 (559)
Q Consensus 386 W~~~~~~~~~p~~R~~hs~~~~~~~~~iG~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~~d~~~~ 450 (559)
-...- ...........++.+.. .+..++.||.++ .|.+||+.+.
T Consensus 150 ~~~~~--~~~~~~~~~v~~~~~~~---------------~~~~l~~~~~dg----~i~i~d~~~~ 193 (366)
T 3k26_A 150 LVAIF--GGVEGHRDEVLSADYDL---------------LGEKIMSCGMDH----SLKLWRINSK 193 (366)
T ss_dssp EEEEE--CSTTSCSSCEEEEEECT---------------TSSEEEEEETTS----CEEEEESCSH
T ss_pred EEEEe--cccccccCceeEEEECC---------------CCCEEEEecCCC----CEEEEECCCC
Confidence 44331 01111111222233221 225667777554 6888888765
No 187
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=86.09 E-value=9.5 Score=37.62 Aligned_cols=110 Identities=15% Similarity=0.172 Sum_probs=56.9
Q ss_pred CCEEEEEeccCCCCCCcceEEEEECCC----C-eEEEeccCCCCCCCccceEEEEE-C-CEEEEEcCcCCCCCCcCceEE
Q 008611 255 ENKLLSIAGHTKDPSEIIQVKVFDLQT----C-SWSTLKTYGKPPVSRGGQSVTLV-G-TSLVIFGGEDAKRSLLNDLHI 327 (559)
Q Consensus 255 ~~~lyv~GG~~~~~~~~~~v~~yd~~t----~-~W~~~~~~g~~p~~r~~~~~~~~-~-~~lyv~GG~~~~~~~~~~~~~ 327 (559)
++.+++.|+.+. .+.+||+.+ . .-..+. ... ..-.+++.. + +.+++.|+.++ .+.+
T Consensus 78 ~~~~l~~~~~dg------~v~vw~~~~~~~~~~~~~~~~---~h~--~~v~~~~~~~~~~~~l~s~~~dg------~v~i 140 (416)
T 2pm9_A 78 NNKIIAGALDNG------SLELYSTNEANNAINSMARFS---NHS--SSVKTVKFNAKQDNVLASGGNNG------EIFI 140 (416)
T ss_dssp SSSCEEEEESSS------CEEEECCSSTTSCCCEEEECC---CSS--SCCCEEEECSSSTTBEEEECSSS------CEEB
T ss_pred CCCeEEEEccCC------eEEEeecccccccccchhhcc---CCc--cceEEEEEcCCCCCEEEEEcCCC------eEEE
Confidence 567777777643 478888876 1 222221 111 111222222 2 56777777543 4788
Q ss_pred EECCCCc------eE-EecCCCCCCCcccccEEEEEcC-CEEEEEcCCCCCCCcCceEEEECCCCeeEe
Q 008611 328 LDLETMT------WD-EIDAVGVPPSPRSDHAAAVHAE-RYLLIFGGGSHAACFNDLHVLDLQTMEWSR 388 (559)
Q Consensus 328 yd~~t~~------W~-~~~~~~~~p~~r~~~~~~~~~~-~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~ 388 (559)
||+.+.. -. .+... ......-.+++...+ +.+++.|+.+ ..+.+||+.+.....
T Consensus 141 wd~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~v~iwd~~~~~~~~ 202 (416)
T 2pm9_A 141 WDMNKCTESPSNYTPLTPGQS--MSSVDEVISLAWNQSLAHVFASAGSS-----NFASIWDLKAKKEVI 202 (416)
T ss_dssp CBTTTTSSCTTTCCCBCCCCS--CCSSCCCCEEEECSSCTTEEEEESSS-----SCEEEEETTTTEEEE
T ss_pred EECCCCccccccccccccccc--cCCCCCeeEEEeCCCCCcEEEEEcCC-----CCEEEEECCCCCcce
Confidence 8887654 11 11000 111222234444444 4577777753 358999998876543
No 188
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=86.05 E-value=23 Score=33.74 Aligned_cols=112 Identities=13% Similarity=0.182 Sum_probs=57.8
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe----CCEEEEEeccCCCCCC
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW----ENKLLSIAGHTKDPSE 270 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~ 270 (559)
++.+++.|+.+ ..+.+||+.++....+..... ... .-..+.+ ++.+++.|+.+.
T Consensus 24 ~g~~lasgs~D-----~~v~lwd~~~~~~~~~~~l~g-----------H~~--~V~~v~~~~~~~~~~l~s~s~D~---- 81 (316)
T 3bg1_A 24 YGTRLATCSSD-----RSVKIFDVRNGGQILIADLRG-----------HEG--PVWQVAWAHPMYGNILASCSYDR---- 81 (316)
T ss_dssp GGCEEEEEETT-----TEEEEEEEETTEEEEEEEEEC-----------CSS--CEEEEEECCGGGSSCEEEEETTS----
T ss_pred CCCEEEEEeCC-----CeEEEEEecCCCcEEEEEEcC-----------CCc--cEEEEEeCCCCCCCEEEEEECCC----
Confidence 45666777643 357788887776543333210 011 1112222 256777777654
Q ss_pred cceEEEEECCCCeEEEeccCCCCCCCccceEEEEE-C--CEEEEEcCcCCCCCCcCceEEEECCCC-ceEEe
Q 008611 271 IIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-G--TSLVIFGGEDAKRSLLNDLHILDLETM-TWDEI 338 (559)
Q Consensus 271 ~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~--~~lyv~GG~~~~~~~~~~~~~yd~~t~-~W~~~ 338 (559)
.+.++|+.+..|..+........ .-.+++.. + +.+++.|+.++ .+.++|+.+. .|...
T Consensus 82 --~v~iWd~~~~~~~~~~~~~~h~~--~V~~v~~~p~~~g~~lasgs~D~------~i~lwd~~~~~~~~~~ 143 (316)
T 3bg1_A 82 --KVIIWREENGTWEKSHEHAGHDS--SVNSVCWAPHDYGLILACGSSDG------AISLLTYTGEGQWEVK 143 (316)
T ss_dssp --CEEEECCSSSCCCEEEEECCCSS--CCCEEEECCTTTCSCEEEECSSS------CEEEEEECSSSCEEEC
T ss_pred --EEEEEECCCCcceEEEEccCCCC--ceEEEEECCCCCCcEEEEEcCCC------CEEEEecCCCCCccee
Confidence 48888988877755432100111 11122222 2 45677777643 3667777654 56543
No 189
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=86.03 E-value=26 Score=33.87 Aligned_cols=33 Identities=0% Similarity=-0.072 Sum_probs=20.1
Q ss_pred EEEEEcCC-EEEEEcCCCCCCCcCceEEEECCCCeeEec
Q 008611 352 AAAVHAER-YLLIFGGGSHAACFNDLHVLDLQTMEWSRP 389 (559)
Q Consensus 352 ~~~~~~~~-~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~ 389 (559)
.+++..++ .||+.+.. .+.+.+||+.+..+..+
T Consensus 215 ~~~~spdg~~l~v~~~~-----~~~v~v~~~~~g~~~~~ 248 (361)
T 3scy_A 215 HLIFNSDGKFAYLINEI-----GGTVIAFRYADGMLDEI 248 (361)
T ss_dssp EEEECTTSSEEEEEETT-----TCEEEEEEEETTEEEEE
T ss_pred EEEEcCCCCEEEEEcCC-----CCeEEEEEecCCceEEe
Confidence 34444444 57776532 24588888887776554
No 190
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=85.95 E-value=13 Score=37.19 Aligned_cols=107 Identities=10% Similarity=0.140 Sum_probs=56.2
Q ss_pred CCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEEEECCCC
Q 008611 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETM 333 (559)
Q Consensus 255 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~ 333 (559)
++.+++.||.++ .+.++|..+.+....-. .... .-.+++.. ++.+++.||.++ .+.+||+.+.
T Consensus 119 ~~~~l~s~s~Dg------~i~vwd~~~~~~~~~l~---~h~~-~V~~v~~~~~~~~l~sgs~D~------~i~iwd~~~~ 182 (410)
T 1vyh_C 119 VFSVMVSASEDA------TIKVWDYETGDFERTLK---GHTD-SVQDISFDHSGKLLASCSADM------TIKLWDFQGF 182 (410)
T ss_dssp SSSEEEEEESSS------CEEEEETTTCCCCEEEC---CCSS-CEEEEEECTTSSEEEEEETTS------CCCEEETTSS
T ss_pred CCCEEEEEeCCC------eEEEEECCCCcEEEEEe---ccCC-cEEEEEEcCCCCEEEEEeCCC------eEEEEeCCCC
Confidence 345677777654 48888888765432210 1111 11122222 457777887654 3667888765
Q ss_pred ceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCee
Q 008611 334 TWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEW 386 (559)
Q Consensus 334 ~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W 386 (559)
.-.. .. ......-.++.+..++..++.|+.+ ..+.+||+.+...
T Consensus 183 ~~~~--~~--~~h~~~V~~v~~~p~~~~l~s~s~D-----~~i~~wd~~~~~~ 226 (410)
T 1vyh_C 183 ECIR--TM--HGHDHNVSSVSIMPNGDHIVSASRD-----KTIKMWEVQTGYC 226 (410)
T ss_dssp CEEE--CC--CCCSSCEEEEEECSSSSEEEEEETT-----SEEEEEETTTCCE
T ss_pred ceeE--EE--cCCCCCEEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCcE
Confidence 4322 11 0111222334444455567777654 4588899877653
No 191
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=85.86 E-value=33 Score=35.11 Aligned_cols=179 Identities=12% Similarity=-0.018 Sum_probs=82.4
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCC----eEEEeee-ccccCCCCCCCCCCCCCCccceeEE-eCCEEEEEeccCCCC
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSW----AWSKIQA-KAVAESTESPSPALLTPCAGHSLIP-WENKLLSIAGHTKDP 268 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~----~W~~~~~-~~~~~~~~~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~ 268 (559)
..+|||-|.. .+.++++|..++ +-.+.-. .... ......+ -|+... -++ |||-.-.+..+
T Consensus 95 r~~l~v~~l~-----s~~I~viD~~t~p~~p~~~k~ie~~~~~-------~~~g~s~-Ph~~~~~pdG-i~Vs~~g~~~g 160 (462)
T 2ece_A 95 RRFLIVPGLR-----SSRIYIIDTKPNPREPKIIKVIEPEEVK-------KVSGYSR-LHTVHCGPDA-IYISALGNEEG 160 (462)
T ss_dssp SCEEEEEBTT-----TCCEEEEECCSCTTSCEEEEEECHHHHH-------HHHCEEE-EEEEEECSSC-EEEEEEEETTS
T ss_pred CCEEEEccCC-----CCeEEEEECCCCCCCceeeeeechhhcc-------cccCCCc-ccceeECCCe-EEEEcCCCcCC
Confidence 5677777763 378999998876 3333220 0000 0000112 233333 355 77743333234
Q ss_pred CCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEE--CCEEEEEc---------CcCCCC---CCcCceEEEECCCCc
Q 008611 269 SEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFG---------GEDAKR---SLLNDLHILDLETMT 334 (559)
Q Consensus 269 ~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~G---------G~~~~~---~~~~~~~~yd~~t~~ 334 (559)
.....+..+|..+.+-..--..+..|... .+.+... .+.+|+.- |++... .+.+.|.+||+.+.+
T Consensus 161 ~~~g~v~vlD~~T~~v~~~~~~~~~~~~~-~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k 239 (462)
T 2ece_A 161 EGPGGILMLDHYSFEPLGKWEIDRGDQYL-AYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK 239 (462)
T ss_dssp CSCCEEEEECTTTCCEEEECCSBCTTCCC-CCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE
T ss_pred CCCCeEEEEECCCCeEEEEEccCCCCccc-cceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc
Confidence 55688999999987643322111222211 1112221 33444431 232221 246789999998763
Q ss_pred eEEecCCCCC-CCcccccEEEEEc--CCEEEEEcCCCCCCCcCceEEEECCCCeeEecc
Q 008611 335 WDEIDAVGVP-PSPRSDHAAAVHA--ERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (559)
Q Consensus 335 W~~~~~~~~~-p~~r~~~~~~~~~--~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~~ 390 (559)
-..--..+.. ..|| |....+. +.++||..-.+-....+.|++|......|....
T Consensus 240 ~~~tI~vg~~g~~P~--~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~ 296 (462)
T 2ece_A 240 RIHSLTLGEENRMAL--ELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEK 296 (462)
T ss_dssp EEEEEESCTTEEEEE--EEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEE
T ss_pred EeeEEecCCCCCccc--eeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEE
Confidence 3221111100 0111 1111112 346776654222222355666555557777653
No 192
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=85.67 E-value=8.5 Score=38.79 Aligned_cols=65 Identities=11% Similarity=0.035 Sum_probs=33.5
Q ss_pred EEEEcCcCCCCCCcCceEEEECCCC---ceEEecCCCCCCCcccccEEEEEc-CCEEEEEcCCCCCCCcCceEEEECCCC
Q 008611 309 LVIFGGEDAKRSLLNDLHILDLETM---TWDEIDAVGVPPSPRSDHAAAVHA-ERYLLIFGGGSHAACFNDLHVLDLQTM 384 (559)
Q Consensus 309 lyv~GG~~~~~~~~~~~~~yd~~t~---~W~~~~~~~~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~dv~~~d~~~~ 384 (559)
+++.|+.++ .|.+||+.+. .+..............-++++... ++.+++.|+.+ ..|.+||+.+.
T Consensus 196 ~l~s~~~dg------~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~d-----g~i~i~d~~~~ 264 (430)
T 2xyi_A 196 YLLSASDDH------TICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD-----QKLMIWDTRNN 264 (430)
T ss_dssp EEEEECTTS------CEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETT-----SEEEEEETTCS
T ss_pred eEEEEeCCC------eEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCC-----CeEEEEECCCC
Confidence 777776543 4788898762 222111000001222233444443 44577776643 45889998764
No 193
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=85.67 E-value=13 Score=40.71 Aligned_cols=180 Identities=10% Similarity=0.037 Sum_probs=89.3
Q ss_pred EECCEEEEEccCCCCcccCcEEEEEcC---CCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe--CCEEEEEeccCCC
Q 008611 193 VVQDKMYIYGGNHNGRYLSDMHILDLR---SWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHTKD 267 (559)
Q Consensus 193 ~~~~~lyv~GG~~~~~~~~~v~~yd~~---t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~ 267 (559)
-.|+++|.+-- .++.....+|+.+.. ...|+.+-..... ............+ +|+.++++.....
T Consensus 116 pdG~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l---------~~~~~~~~~~~~~SPDG~~la~~~~~~G 185 (741)
T 1yr2_A 116 RRGASVFYSWN-SGLMNQSQLLVRPADAPVGTKGRVLLDPNTW---------AKDGATALDAWAASDDGRLLAYSVQDGG 185 (741)
T ss_dssp EETTEEEEEEE-CSSCSSCEEEEEETTSCTTCCCEEEECGGGC---------C----EEEEEEEECTTSSEEEEEEEETT
T ss_pred EECCEEEEEEE-cCCCeEEEEEEEcCCccCCCCCEEEECHHHh---------ccCCCEEEEeEEECCCCCEEEEEEcCCC
Confidence 34667666532 223335778999987 7788776332100 0000011122223 6666666554322
Q ss_pred CCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCC--------CCCcCceEEEECCCCce--EE
Q 008611 268 PSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAK--------RSLLNDLHILDLETMTW--DE 337 (559)
Q Consensus 268 ~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~--------~~~~~~~~~yd~~t~~W--~~ 337 (559)
.....++++|+.+++...... +.... ..++...++.++++..+.. ......|+++++.+..- ..
T Consensus 186 -~e~~~i~v~dl~tg~~~~~~~----~~~~~-~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~l 259 (741)
T 1yr2_A 186 -SDWRTVKFVGVADGKPLADEL----KWVKF-SGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQP 259 (741)
T ss_dssp -CSEEEEEEEETTTCCEEEEEE----EEEES-CCCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEE
T ss_pred -CceEEEEEEECCCCCCCCccC----CCcee-ccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEE
Confidence 334679999999998765421 11111 1222222244444433221 11245688999877653 22
Q ss_pred ecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCC--e-eEecc
Q 008611 338 IDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTM--E-WSRPT 390 (559)
Q Consensus 338 ~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~--~-W~~~~ 390 (559)
+... ...+....+..+..++..+++.........+++|++|+.+. . |..+.
T Consensus 260 v~~~--~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~ 313 (741)
T 1yr2_A 260 VFAT--PELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALI 313 (741)
T ss_dssp EECC--TTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEE
T ss_pred Eecc--CCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEec
Confidence 2211 12223334444444554344433222223568999999877 6 87774
No 194
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=85.67 E-value=24 Score=33.37 Aligned_cols=145 Identities=10% Similarity=0.031 Sum_probs=69.2
Q ss_pred CCE-EEEEccCCCCcccCcEEEEEc-CCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCCCCCcc
Q 008611 195 QDK-MYIYGGNHNGRYLSDMHILDL-RSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEII 272 (559)
Q Consensus 195 ~~~-lyv~GG~~~~~~~~~v~~yd~-~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~ 272 (559)
++. +++.|+.+ ..+.+||+ .+.....+... +....-.+++...+.+++.|+.+ .
T Consensus 67 ~~~~~l~~~~~d-----g~i~~wd~~~~~~~~~~~~~-------------~~~~~v~~l~~~~~~~l~s~~~d------~ 122 (342)
T 1yfq_A 67 NTDLQIYVGTVQ-----GEILKVDLIGSPSFQALTNN-------------EANLGICRICKYGDDKLIAASWD------G 122 (342)
T ss_dssp SSSEEEEEEETT-----SCEEEECSSSSSSEEECBSC-------------CCCSCEEEEEEETTTEEEEEETT------S
T ss_pred CCCcEEEEEcCC-----CeEEEEEeccCCceEecccc-------------CCCCceEEEEeCCCCEEEEEcCC------C
Confidence 566 67777643 46889999 88766444220 00011111222225666666654 3
Q ss_pred eEEEEECCCCe-------EEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCC-Cc--eEEecCCC
Q 008611 273 QVKVFDLQTCS-------WSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLET-MT--WDEIDAVG 342 (559)
Q Consensus 273 ~v~~yd~~t~~-------W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t-~~--W~~~~~~~ 342 (559)
.+..||+.+.. ...+. .......-.++....+. ++.|+.+ ..+.+||+.+ .. ......
T Consensus 123 ~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~-l~~~~~d------~~i~i~d~~~~~~~~~~~~~~-- 190 (342)
T 1yfq_A 123 LIEVIDPRNYGDGVIAVKNLNSN---NTKVKNKIFTMDTNSSR-LIVGMNN------SQVQWFRLPLCEDDNGTIEES-- 190 (342)
T ss_dssp EEEEECHHHHTTBCEEEEESCSS---SSSSCCCEEEEEECSSE-EEEEEST------TEEEEEESSCCTTCCCEEEEC--
T ss_pred eEEEEcccccccccccccCCeee---EEeeCCceEEEEecCCc-EEEEeCC------CeEEEEECCccccccceeeec--
Confidence 47777765400 11121 11111222233333445 5555542 3588999887 33 333221
Q ss_pred CCCCcccccEEEEEc-CCEEEEEcCCCCCCCcCceEEEECC
Q 008611 343 VPPSPRSDHAAAVHA-ERYLLIFGGGSHAACFNDLHVLDLQ 382 (559)
Q Consensus 343 ~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~dv~~~d~~ 382 (559)
+....-.++++.. ++.+++.|+.+ ..+.+||..
T Consensus 191 --~~~~~i~~i~~~~~~~~~l~~~~~d-----g~i~i~~~~ 224 (342)
T 1yfq_A 191 --GLKYQIRDVALLPKEQEGYACSSID-----GRVAVEFFD 224 (342)
T ss_dssp --SCSSCEEEEEECSGGGCEEEEEETT-----SEEEEEECC
T ss_pred --CCCCceeEEEECCCCCCEEEEEecC-----CcEEEEEEc
Confidence 1222223444544 45577777653 235555543
No 195
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1
Probab=85.58 E-value=20 Score=32.10 Aligned_cols=154 Identities=14% Similarity=0.121 Sum_probs=81.0
Q ss_pred eEEEECCEEEEEccCCCCcccCcEEEEEcCCC--eEEEeeeccccCCCCCCCCCCCCCCccceeEEe--CCEEEEEeccC
Q 008611 190 GAAVVQDKMYIYGGNHNGRYLSDMHILDLRSW--AWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHT 265 (559)
Q Consensus 190 ~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~ 265 (559)
+++.+++++|+|=| +.+|+++.... ........... +..|. ... ++... ++++|+|-|.
T Consensus 11 Ai~~~~g~~yfFkg-------~~~Wr~~~~~~~~~~~p~~Is~~w-------~glP~-~ID-Aa~~~~~~~~~yfFkG~- 73 (195)
T 1itv_A 11 AIAEIGNQLYLFKD-------GKYWRFSEGRGSRPQGPFLIADKW-------PALPR-KLD-SVFEEPLSKKLFFFSGR- 73 (195)
T ss_dssp EEEEETTEEEEEET-------TEEEEECCSSSCCCEEEEEHHHHC-------TTSCS-SCS-EEEECTTTCCEEEEETT-
T ss_pred EEEEeCCEEEEEEC-------CEEEEEECCccccCCCcEEhhhcc-------CCCCC-Ccc-EEEEECCCCeEEEEeCC-
Confidence 34557999999987 56888877552 22222111100 11222 222 22222 6889999874
Q ss_pred CCCCCcceEEEEECCCCeE-EEeccCCCCCCC--ccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCCceEE-----
Q 008611 266 KDPSEIIQVKVFDLQTCSW-STLKTYGKPPVS--RGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDE----- 337 (559)
Q Consensus 266 ~~~~~~~~v~~yd~~t~~W-~~~~~~g~~p~~--r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~----- 337 (559)
..|+|+..+..- ..+...| +|.. ....+....++++|+|-| +..|+||..+.+-..
T Consensus 74 -------~yw~~~~~~~~~Pk~i~~~G-~p~~~~~iDAA~~~~~g~~yfFkg--------~~ywr~d~~~~~~~~gyPr~ 137 (195)
T 1itv_A 74 -------QVWVYTGASVLGPRRLDKLG-LGADVAQVTGALRSGRGKMLLFSG--------RRLWRFDVKAQMVDPRSASE 137 (195)
T ss_dssp -------EEEEEETTEEEEEEEGGGGT-CCTTCCCCCEEEECSTTEEEEEET--------TEEEEEETTTTEECGGGCEE
T ss_pred -------EEEEEcCCccCCCEEeeecc-cCCCccceeEEEEcCCCeEEEEeC--------CEEEEEeCCcccccCCCccC
Confidence 578887553221 1122112 3332 223333322569999976 357999987653211
Q ss_pred ec-CCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCee
Q 008611 338 ID-AVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEW 386 (559)
Q Consensus 338 ~~-~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W 386 (559)
+. .-...| ..-.++... ++.+|+|-|. ..|.||..+..-
T Consensus 138 i~~~w~Gvp--~~idaa~~~-~g~~Yffkg~-------~y~~~~~~~~~v 177 (195)
T 1itv_A 138 VDRMFPGVP--LDTHDVFQF-REKAYFCQDR-------FYWRVSSRSELN 177 (195)
T ss_dssp HHHHSTTSC--SSCSEEEEE-TTEEEEEETT-------EEEEEECCTTCC
T ss_pred hhhcCCCCC--CCCCEEEEe-CCeEEEEeCC-------EEEEEECCccEE
Confidence 11 000112 222344444 4779999874 489999876653
No 196
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=85.46 E-value=10 Score=36.05 Aligned_cols=146 Identities=14% Similarity=0.058 Sum_probs=71.3
Q ss_pred EEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe--CCEEEEEeccCCCCCCcceE
Q 008611 197 KMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHTKDPSEIIQV 274 (559)
Q Consensus 197 ~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v 274 (559)
.+++.||.+ ..+.+||+.+.+....-.. ... .-.++.+ ++.+++.|+.+. .+
T Consensus 186 ~~~~s~~~d-----~~i~i~d~~~~~~~~~~~~-------------h~~--~v~~~~~s~~~~~l~s~s~Dg------~i 239 (340)
T 4aow_A 186 PIIVSCGWD-----KLVKVWNLANCKLKTNHIG-------------HTG--YLNTVTVSPDGSLCASGGKDG------QA 239 (340)
T ss_dssp CEEEEEETT-----SCEEEEETTTTEEEEEECC-------------CSS--CEEEEEECTTSSEEEEEETTC------EE
T ss_pred cEEEEEcCC-----CEEEEEECCCCceeeEecC-------------CCC--cEEEEEECCCCCEEEEEeCCC------eE
Confidence 355555532 3478889888765432110 111 1122223 577788887643 58
Q ss_pred EEEECCCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCC-----CCccc
Q 008611 275 KVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVP-----PSPRS 349 (559)
Q Consensus 275 ~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~-----p~~r~ 349 (559)
.+||+.+..-...-.. ...-.+++...+..++.|+.+ +.+.+||+.+..-......... ..+..
T Consensus 240 ~iwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~ 308 (340)
T 4aow_A 240 MLWDLNEGKHLYTLDG-----GDIINALCFSPNRYWLCAATG------PSIKIWDLEGKIIVDELKQEVISTSSKAEPPQ 308 (340)
T ss_dssp EEEETTTTEEEEEEEC-----SSCEEEEEECSSSSEEEEEET------TEEEEEETTTTEEEEEECCC-------CCCCC
T ss_pred EEEEeccCceeeeecC-----CceEEeeecCCCCceeeccCC------CEEEEEECCCCeEEEeccccceeeeccCCCCC
Confidence 8889887654333211 111122233344445556543 3477888876543222111000 01111
Q ss_pred ccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCC
Q 008611 350 DHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTM 384 (559)
Q Consensus 350 ~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~ 384 (559)
-.++++..++..++.||.+ ..|.+||+.++
T Consensus 309 v~~l~~s~dg~~l~sgs~D-----g~v~iW~~~tG 338 (340)
T 4aow_A 309 CTSLAWSADGQTLFAGYTD-----NLVRVWQVTIG 338 (340)
T ss_dssp EEEEEECTTSSEEEEEETT-----SCEEEEEEEC-
T ss_pred EEEEEECCCCCEEEEEeCC-----CEEEEEeCCCc
Confidence 1233344455577777754 34778887664
No 197
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=85.36 E-value=28 Score=33.76 Aligned_cols=106 Identities=15% Similarity=0.102 Sum_probs=57.9
Q ss_pred CCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCcCceEEEECCC
Q 008611 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLET 332 (559)
Q Consensus 255 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t 332 (559)
++.+++.|+.+. .+..+|+.+.+....-. ... ....++.+ ++.+++.|+.++ .+.+||+.+
T Consensus 209 ~g~~l~sgs~Dg------~v~~wd~~~~~~~~~~~---~h~--~~v~~v~~~p~~~~l~s~s~D~------~v~lwd~~~ 271 (354)
T 2pbi_B 209 TGNTFVSGGCDK------KAMVWDMRSGQCVQAFE---THE--SDVNSVRYYPSGDAFASGSDDA------TCRLYDLRA 271 (354)
T ss_dssp SCCEEEEEETTS------CEEEEETTTCCEEEEEC---CCS--SCEEEEEECTTSSEEEEEETTS------CEEEEETTT
T ss_pred CCCEEEEEeCCC------eEEEEECCCCcEEEEec---CCC--CCeEEEEEeCCCCEEEEEeCCC------eEEEEECCC
Confidence 357788887754 48899998877544321 111 11122222 456777777643 477889877
Q ss_pred CceEEecCCCCCCCcccc-cEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCe
Q 008611 333 MTWDEIDAVGVPPSPRSD-HAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTME 385 (559)
Q Consensus 333 ~~W~~~~~~~~~p~~r~~-~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~ 385 (559)
..-...-.. ...... .++....++.+++.|+.+ ..+.+||+.+..
T Consensus 272 ~~~~~~~~~---~~~~~~~~~~~~s~~g~~l~~g~~d-----~~i~vwd~~~~~ 317 (354)
T 2pbi_B 272 DREVAIYSK---ESIIFGASSVDFSLSGRLLFAGYND-----YTINVWDVLKGS 317 (354)
T ss_dssp TEEEEEECC---TTCCSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTCS
T ss_pred CcEEEEEcC---CCcccceeEEEEeCCCCEEEEEECC-----CcEEEEECCCCc
Confidence 643332211 111112 233333455577777643 358889986653
No 198
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*
Probab=85.21 E-value=32 Score=34.29 Aligned_cols=186 Identities=17% Similarity=0.214 Sum_probs=100.7
Q ss_pred CCCCCCccceeEEeCCEEEEEeccCCCCCCcceE--EEEE-----CCCCeEEEeccCCCCCCCccceEEEEECCEEEEEc
Q 008611 241 ALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQV--KVFD-----LQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFG 313 (559)
Q Consensus 241 ~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v--~~yd-----~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~G 313 (559)
..|..-.-|+.+.+++.-|++|=+.++- .-..+ ..|. +....=..++. ..-..-...++-.+++.||++-
T Consensus 279 ~i~~vTe~HSFa~i~~~~fa~GyHnGDv-~PRe~G~~yfs~~~~sp~~~vrr~i~s--ey~~~AsEPCvkyYdgvLyLtT 355 (670)
T 3ju4_A 279 LIPSVTEVHSFATIDNNGFAMGYHQGDV-APREVGLFYFPDAFNSPSNYVRRQIPS--EYEPDASEPCIKYYDGVLYLIT 355 (670)
T ss_dssp SCTTCSEEEEEEECSSSCEEEEEEECSS-SSCEEEEEEETTTTTCTTCCEEEECCG--GGCTTEEEEEEEEETTEEEEEE
T ss_pred cccceeeeeeeeEecCCceEEEeccCCC-CcceeeEEEecccccCCcceeeeechh--hhccccccchhhhhCCEEEEEe
Confidence 4566677899999998888998776651 22222 2221 11111122211 1122233445556799999986
Q ss_pred CcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccccE---EEEEcCCEEEEEcCCC----------CCCC---cCceE
Q 008611 314 GEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHA---AAVHAERYLLIFGGGS----------HAAC---FNDLH 377 (559)
Q Consensus 314 G~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~---~~~~~~~~l~v~GG~~----------~~~~---~~dv~ 377 (559)
--+.....-..+++-+.....|+.+... .. ..|+ .+.+ ++.|||||-.. .+.+ ....+
T Consensus 356 Rgt~~~~~GS~L~rs~d~Gq~w~slrfp----~n-vHhtnlPFakv-gD~l~mFgsERA~nEWE~G~pD~RY~a~yPRtF 429 (670)
T 3ju4_A 356 RGTRGDRLGSSLHRSRDIGQTWESLRFP----HN-VHHTTLPFAKV-GDDLIMFGSERAENEWEAGAPDDRYKASYPRTF 429 (670)
T ss_dssp EESCTTSCCCEEEEESSTTSSCEEEECT----TC-CCSSCCCEEEE-TTEEEEEEECSSTTCSSTTCCCCCSSCBCCEEE
T ss_pred cCcCCCCCcceeeeecccCCchhheecc----cc-ccccCCCccee-CCEEEEEeccccccccccCCCcccccccCCceE
Confidence 5433333446688888888899988632 11 1121 2333 66799998511 1111 11222
Q ss_pred --EEEC-----CCCeeEeccC---CCCCCCCccccEEEEECCceecceeeeeeccCCCcEEEEEcCcCC-----------
Q 008611 378 --VLDL-----QTMEWSRPTQ---QGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNG----------- 436 (559)
Q Consensus 378 --~~d~-----~~~~W~~~~~---~~~~p~~R~~hs~~~~~~~~~iG~s~~~~~~~~~~~l~v~GG~~~----------- 436 (559)
..++ +.-+|..+.. ++.....-.+..++++-++ ---|+|||.+-
T Consensus 430 ~~r~nv~~W~~d~~ew~nItdqIYqG~ivNsavGVGSv~vKD~---------------~lyyiFGgEd~~np~s~gdN~~ 494 (670)
T 3ju4_A 430 YARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDN---------------YIYYMFGGEDHFNPWTYGDNSA 494 (670)
T ss_dssp EEEEETTTCCCTTCCCEEEEECBBCCSSSCCCSEEEEEEEETT---------------EEEEEEEEBCSCCCCTTTTTTT
T ss_pred EEEeecccCCccceEEEEeecceeccccccccccceeEEEeCC---------------EEEEEecCcccCCccccccccc
Confidence 2232 3446766632 2455555556666665442 14578999641
Q ss_pred -------CCcccEEEEeCCCc
Q 008611 437 -------RYNNEVHVLKPSHK 450 (559)
Q Consensus 437 -------~~~~~v~~~d~~~~ 450 (559)
.+..++|+|.+.-.
T Consensus 495 k~~~~~~Ghp~dlY~~ri~i~ 515 (670)
T 3ju4_A 495 KDPFKSDGHPSDLYCYKMKIG 515 (670)
T ss_dssp CCTTSTTCCCCEEEEEEEECS
T ss_pred cCccccCCCCcceEEEEEEec
Confidence 13568899876444
No 199
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=85.17 E-value=45 Score=35.92 Aligned_cols=110 Identities=10% Similarity=-0.032 Sum_probs=55.5
Q ss_pred ceEEEEECCC-CeEEEeccCCCCCCCccceEEEEECC-EEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCccc
Q 008611 272 IQVKVFDLQT-CSWSTLKTYGKPPVSRGGQSVTLVGT-SLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRS 349 (559)
Q Consensus 272 ~~v~~yd~~t-~~W~~~~~~g~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~ 349 (559)
..++.+|+.+ .+-..+... .+.......++.-++ .|++....... ....|+++|+.+.+...+........-..
T Consensus 263 ~~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~pDg~~l~~~~~~~~~--~~~~i~~~d~~~g~~~~~~~~~~~~~~~~ 338 (741)
T 2ecf_A 263 VKLGVISPAEQAQTQWIDLG--KEQDIYLARVNWRDPQHLSFQRQSRDQ--KKLDLVEVTLASNQQRVLAHETSPTWVPL 338 (741)
T ss_dssp EEEEEECSSTTCCCEEECCC--SCSSEEEEEEEEEETTEEEEEEEETTS--SEEEEEEEETTTCCEEEEEEEECSSCCCC
T ss_pred eEEEEEECCCCCceEEecCC--CCcceEEEEEEeCCCCEEEEEEecccC--CeEEEEEEECCCCceEEEEEcCCCCcCCc
Confidence 4788899988 776555321 011111111121334 45444332221 24679999999988776542211000001
Q ss_pred ccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEec
Q 008611 350 DHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRP 389 (559)
Q Consensus 350 ~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~ 389 (559)
....+...++.+++.++.++ ...+|.+|+... ...+
T Consensus 339 ~~~~~~spdg~~~~~~~~~g---~~~l~~~~~~~~-~~~l 374 (741)
T 2ecf_A 339 HNSLRFLDDGSILWSSERTG---FQHLYRIDSKGK-AAAL 374 (741)
T ss_dssp CSCCEECTTSCEEEEECTTS---SCEEEEECSSSC-EEES
T ss_pred CCceEECCCCeEEEEecCCC---ccEEEEEcCCCC-eeee
Confidence 12334445555666554332 356899987766 5555
No 200
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=84.92 E-value=14 Score=35.30 Aligned_cols=105 Identities=14% Similarity=0.246 Sum_probs=53.8
Q ss_pred CCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEE----CCEEEEEcCcCCCCCCcCceEEEEC
Q 008611 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV----GTSLVIFGGEDAKRSLLNDLHILDL 330 (559)
Q Consensus 255 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~yd~ 330 (559)
++.+++.|+.+ ..+..||+.+.+-..... .. ..-.+++.. ++..++.|+.+ ..+.+||+
T Consensus 179 ~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~---~~--~~v~~~~~~~~~~~~~~l~~~~~d------g~i~i~d~ 241 (357)
T 3i2n_A 179 EERVVCAGYDN------GDIKLFDLRNMALRWETN---IK--NGVCSLEFDRKDISMNKLVATSLE------GKFHVFDM 241 (357)
T ss_dssp CCCEEEEEETT------SEEEEEETTTTEEEEEEE---CS--SCEEEEEESCSSSSCCEEEEEEST------TEEEEEEE
T ss_pred CCCEEEEEccC------CeEEEEECccCceeeecC---CC--CceEEEEcCCCCCCCCEEEEECCC------CeEEEEeC
Confidence 56777777653 358899998877533321 11 112223332 45666667643 34777776
Q ss_pred CCCc----eEEecCCCCCCCcccccEEEEEcCCE-EEEEcCCCCCCCcCceEEEECCCC
Q 008611 331 ETMT----WDEIDAVGVPPSPRSDHAAAVHAERY-LLIFGGGSHAACFNDLHVLDLQTM 384 (559)
Q Consensus 331 ~t~~----W~~~~~~~~~p~~r~~~~~~~~~~~~-l~v~GG~~~~~~~~dv~~~d~~~~ 384 (559)
.+.. +...... .....-.++....++. +++.|+.+ ..+.+||+.+.
T Consensus 242 ~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~ 292 (357)
T 3i2n_A 242 RTQHPTKGFASVSEK---AHKSTVWQVRHLPQNRELFLTAGGA-----GGLHLWKYEYP 292 (357)
T ss_dssp EEEETTTEEEEEEEE---CCSSCEEEEEEETTEEEEEEEEETT-----SEEEEEEEECC
T ss_pred cCCCcccceeeeccC---CCcCCEEEEEECCCCCcEEEEEeCC-----CcEEEeecCCC
Confidence 5421 1110000 1122223444555555 67777654 34777776543
No 201
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=84.84 E-value=26 Score=33.12 Aligned_cols=63 Identities=14% Similarity=0.179 Sum_probs=35.4
Q ss_pred CCE-EEEEeccCCCCCCcceEEEEEC-CCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCC
Q 008611 255 ENK-LLSIAGHTKDPSEIIQVKVFDL-QTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLET 332 (559)
Q Consensus 255 ~~~-lyv~GG~~~~~~~~~~v~~yd~-~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t 332 (559)
++. +++.|+.++ .+.+||+ .+.....+... +....-.++....+.+++.|+.+ +.+.+||+.+
T Consensus 67 ~~~~~l~~~~~dg------~i~~wd~~~~~~~~~~~~~---~~~~~v~~l~~~~~~~l~s~~~d------~~i~iwd~~~ 131 (342)
T 1yfq_A 67 NTDLQIYVGTVQG------EILKVDLIGSPSFQALTNN---EANLGICRICKYGDDKLIAASWD------GLIEVIDPRN 131 (342)
T ss_dssp SSSEEEEEEETTS------CEEEECSSSSSSEEECBSC---CCCSCEEEEEEETTTEEEEEETT------SEEEEECHHH
T ss_pred CCCcEEEEEcCCC------eEEEEEeccCCceEecccc---CCCCceEEEEeCCCCEEEEEcCC------CeEEEEcccc
Confidence 567 777777643 5889999 88876555420 01111122222325566666653 3477777653
No 202
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=84.83 E-value=21 Score=33.65 Aligned_cols=63 Identities=10% Similarity=0.263 Sum_probs=34.4
Q ss_pred CEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEE--C--CEEEEEcCcCCCCCCcCceEEEECC
Q 008611 256 NKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--G--TSLVIFGGEDAKRSLLNDLHILDLE 331 (559)
Q Consensus 256 ~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~--~~lyv~GG~~~~~~~~~~~~~yd~~ 331 (559)
+.+++.|+.+. .+.++|+.+..|..+... ........++.+ + +.+++.|+.+ ..+.+||+.
T Consensus 67 g~~l~s~s~D~------~v~iWd~~~~~~~~~~~~---~~h~~~v~~v~~~p~~~g~~l~s~s~d------~~v~~wd~~ 131 (297)
T 2pm7_B 67 GTILASCSYDG------KVMIWKEENGRWSQIAVH---AVHSASVNSVQWAPHEYGPMLLVASSD------GKVSVVEFK 131 (297)
T ss_dssp CSEEEEEETTT------EEEEEEBSSSCBCCCEEE---CCCSSCEEEEEECCGGGCSEEEEEETT------SEEEEEEBC
T ss_pred CCEEEEEcCCC------EEEEEEcCCCceEEEEEe---ecCCCceeEEEeCcCCCCcEEEEEECC------CcEEEEEec
Confidence 56777777653 588889888776554321 101111222222 1 4566667654 346677776
Q ss_pred CC
Q 008611 332 TM 333 (559)
Q Consensus 332 t~ 333 (559)
+.
T Consensus 132 ~~ 133 (297)
T 2pm7_B 132 EN 133 (297)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 203
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=84.77 E-value=24 Score=34.52 Aligned_cols=111 Identities=14% Similarity=0.127 Sum_probs=57.8
Q ss_pred CEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCC----ccceEEEEE--C-CEEEEEcCcCCCCCCcCceEEE
Q 008611 256 NKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVS----RGGQSVTLV--G-TSLVIFGGEDAKRSLLNDLHIL 328 (559)
Q Consensus 256 ~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~----r~~~~~~~~--~-~~lyv~GG~~~~~~~~~~~~~y 328 (559)
+.+++.|+.+. .+.+||+.+.+....-. .+.. ........+ + ..+++.|+.++. ...+.+|
T Consensus 178 ~~~l~~~~~dg------~v~iwd~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~---~~~i~~~ 245 (416)
T 2pm9_A 178 AHVFASAGSSN------FASIWDLKAKKEVIHLS---YTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN---DPSILIW 245 (416)
T ss_dssp TTEEEEESSSS------CEEEEETTTTEEEEEEC---CCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS---SCCCCEE
T ss_pred CcEEEEEcCCC------CEEEEECCCCCcceEEe---ccccccccCCceEEEEECCCCCCEEEEEECCCC---CceEEEE
Confidence 57888887643 48999998876544321 1110 122222222 2 357777765432 1258889
Q ss_pred ECCCCceEEecCCCCCCCcccccEEEEEc-CCEEEEEcCCCCCCCcCceEEEECCCCe
Q 008611 329 DLETMTWDEIDAVGVPPSPRSDHAAAVHA-ERYLLIFGGGSHAACFNDLHVLDLQTME 385 (559)
Q Consensus 329 d~~t~~W~~~~~~~~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~dv~~~d~~~~~ 385 (559)
|+.+..-. +.... ......-.+++... ++.+++.|+.+ ..+.+||+.+.+
T Consensus 246 d~~~~~~~-~~~~~-~~~~~~v~~~~~s~~~~~~l~s~~~d-----g~v~~wd~~~~~ 296 (416)
T 2pm9_A 246 DLRNANTP-LQTLN-QGHQKGILSLDWCHQDEHLLLSSGRD-----NTVLLWNPESAE 296 (416)
T ss_dssp ETTSTTSC-SBCCC-SCCSSCEEEEEECSSCSSCEEEEESS-----SEEEEECSSSCC
T ss_pred eCCCCCCC-cEEee-cCccCceeEEEeCCCCCCeEEEEeCC-----CCEEEeeCCCCc
Confidence 98764311 11110 01112222333433 55577777653 358889987754
No 204
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=84.31 E-value=28 Score=32.81 Aligned_cols=148 Identities=9% Similarity=0.042 Sum_probs=72.5
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCCCCCcceE
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQV 274 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v 274 (559)
++.+++.|+.+ ..+.++|+.+..-...-.. ...........-++.+++.|+.+ ..+
T Consensus 24 ~~~~l~s~~~d-----g~v~lWd~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~l~s~s~d------~~i 79 (304)
T 2ynn_A 24 TEPWVLTTLYS-----GRVELWNYETQVEVRSIQV-------------TETPVRAGKFIARKNWIIVGSDD------FRI 79 (304)
T ss_dssp SSSEEEEEETT-----SEEEEEETTTTEEEEEEEC-------------CSSCEEEEEEEGGGTEEEEEETT------SEE
T ss_pred CCCEEEEEcCC-----CcEEEEECCCCceeEEeec-------------cCCcEEEEEEeCCCCEEEEECCC------CEE
Confidence 45566666643 3578889888754322111 01111111222256677777764 358
Q ss_pred EEEECCCCeEEEeccCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccccEE
Q 008611 275 KVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAA 353 (559)
Q Consensus 275 ~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~ 353 (559)
.++|+.+++-...-. + .. ..-.+++.. ++.+++.|+.++ .+.+||+.+.. ...... ......-.++
T Consensus 80 ~vwd~~~~~~~~~~~-~-h~--~~v~~~~~~~~~~~l~sgs~D~------~v~lWd~~~~~-~~~~~~--~~h~~~v~~v 146 (304)
T 2ynn_A 80 RVFNYNTGEKVVDFE-A-HP--DYIRSIAVHPTKPYVLSGSDDL------TVKLWNWENNW-ALEQTF--EGHEHFVMCV 146 (304)
T ss_dssp EEEETTTCCEEEEEE-C-CS--SCEEEEEECSSSSEEEEEETTS------CEEEEEGGGTT-EEEEEE--CCCCSCEEEE
T ss_pred EEEECCCCcEEEEEe-C-CC--CcEEEEEEcCCCCEEEEECCCC------eEEEEECCCCc-chhhhh--cccCCcEEEE
Confidence 889988775332210 0 11 111122222 456677777543 47788876542 211111 0111112233
Q ss_pred EEEc-CCEEEEEcCCCCCCCcCceEEEECCCC
Q 008611 354 AVHA-ERYLLIFGGGSHAACFNDLHVLDLQTM 384 (559)
Q Consensus 354 ~~~~-~~~l~v~GG~~~~~~~~dv~~~d~~~~ 384 (559)
+... ++.+++.|+.+ ..+.+||+.+.
T Consensus 147 ~~~p~~~~~l~sgs~D-----~~v~iwd~~~~ 173 (304)
T 2ynn_A 147 AFNPKDPSTFASGCLD-----RTVKVWSLGQS 173 (304)
T ss_dssp EECTTCTTEEEEEETT-----SEEEEEETTCS
T ss_pred EECCCCCCEEEEEeCC-----CeEEEEECCCC
Confidence 3332 44577777754 35788887543
No 205
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=84.17 E-value=32 Score=33.37 Aligned_cols=150 Identities=11% Similarity=0.046 Sum_probs=76.7
Q ss_pred CCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEE---CCEEEEEcCcCCCCCCcCceEEEECC
Q 008611 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV---GTSLVIFGGEDAKRSLLNDLHILDLE 331 (559)
Q Consensus 255 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~yd~~ 331 (559)
++..++.|+.+ ..+..+|+.+.+....-. + .... -.++... ++.+++.|+.++ .+.+||+.
T Consensus 165 ~~~~l~t~s~D------~~v~lwd~~~~~~~~~~~-~-h~~~--v~~~~~~~~~~g~~l~sgs~Dg------~v~~wd~~ 228 (354)
T 2pbi_B 165 SDMQILTASGD------GTCALWDVESGQLLQSFH-G-HGAD--VLCLDLAPSETGNTFVSGGCDK------KAMVWDMR 228 (354)
T ss_dssp SSSEEEEEETT------SEEEEEETTTCCEEEEEE-C-CSSC--EEEEEECCCSSCCEEEEEETTS------CEEEEETT
T ss_pred CCCEEEEEeCC------CcEEEEeCCCCeEEEEEc-C-CCCC--eEEEEEEeCCCCCEEEEEeCCC------eEEEEECC
Confidence 44555566553 358889998876433211 1 0111 1111111 346777887643 48889998
Q ss_pred CCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEeccCCCCCCCCccccEEEEECCce
Q 008611 332 TMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENW 411 (559)
Q Consensus 332 t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~~~~~~~p~~R~~hs~~~~~~~~ 411 (559)
+.+....-.. ....-.+++...++.+++.|+.+ ..+.+||+.+..-..+.. .........++.+.
T Consensus 229 ~~~~~~~~~~----h~~~v~~v~~~p~~~~l~s~s~D-----~~v~lwd~~~~~~~~~~~---~~~~~~~~~~~~~s--- 293 (354)
T 2pbi_B 229 SGQCVQAFET----HESDVNSVRYYPSGDAFASGSDD-----ATCRLYDLRADREVAIYS---KESIIFGASSVDFS--- 293 (354)
T ss_dssp TCCEEEEECC----CSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTEEEEEEC---CTTCCSCEEEEEEC---
T ss_pred CCcEEEEecC----CCCCeEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCcEEEEEc---CCCcccceeEEEEe---
Confidence 8765443211 11122234444455577777754 347889987764332211 01111222233332
Q ss_pred ecceeeeeeccCCCcEEEEEcCcCCCCcccEEEEeCCCcc
Q 008611 412 FLGLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSHKS 451 (559)
Q Consensus 412 ~iG~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~~d~~~~~ 451 (559)
. .+.+++.|+.++ .|.+||..+..
T Consensus 294 ----------~--~g~~l~~g~~d~----~i~vwd~~~~~ 317 (354)
T 2pbi_B 294 ----------L--SGRLLFAGYNDY----TINVWDVLKGS 317 (354)
T ss_dssp ----------T--TSSEEEEEETTS----CEEEEETTTCS
T ss_pred ----------C--CCCEEEEEECCC----cEEEEECCCCc
Confidence 1 225667776543 67888876653
No 206
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=84.00 E-value=3.2 Score=30.99 Aligned_cols=35 Identities=23% Similarity=0.350 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhh
Q 008611 523 KEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKV 557 (559)
Q Consensus 523 ~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ke 557 (559)
++.+++.|...+..+..++.++.+.+.++++|..|
T Consensus 26 KQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e 60 (81)
T 1wt6_A 26 RQSLSREMEAIRTDNQNFASQLREAEARNRDLEAH 60 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444445555555555555444444
No 207
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=83.87 E-value=13 Score=36.23 Aligned_cols=110 Identities=12% Similarity=0.040 Sum_probs=57.8
Q ss_pred eeEEeCCEEEEEeccCCCCCCcceEEEEECCCCe-------EEEeccCCCCCCCccceEEEEE-C----C---EEEEEcC
Q 008611 250 SLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCS-------WSTLKTYGKPPVSRGGQSVTLV-G----T---SLVIFGG 314 (559)
Q Consensus 250 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~-------W~~~~~~g~~p~~r~~~~~~~~-~----~---~lyv~GG 314 (559)
.++.+...+++.||.++ .+.+||+.+.. -..+.. ...+. .++... + + .+++.|+
T Consensus 20 ~~~~~~~~~l~s~~~dg------~i~iw~~~~~~~~~~~~~~~~~~~---h~~~v--~~~~~~~~~~~~g~~~~~l~s~~ 88 (397)
T 1sq9_A 20 FSVSACNSFTVSCSGDG------YLKVWDNKLLDNENPKDKSYSHFV---HKSGL--HHVDVLQAIERDAFELCLVATTS 88 (397)
T ss_dssp EEEEECSSEEEEEETTS------EEEEEESBCCTTCCGGGGEEEEEC---CTTCE--EEEEEEEEEETTTEEEEEEEEEE
T ss_pred EEEEecCCeEEEEcCCC------EEEEEECCCcccccCCCcceEEec---CCCcE--EEEEEecccccCCccccEEEEEc
Confidence 34444556777777643 58888888765 333321 11111 222222 3 5 7777777
Q ss_pred cCCCCCCcCceEEEECCCCc------eEEecCCCCCCC--cccccEEEEE----cCCEE-EEEcCCCCCCCcCceEEEEC
Q 008611 315 EDAKRSLLNDLHILDLETMT------WDEIDAVGVPPS--PRSDHAAAVH----AERYL-LIFGGGSHAACFNDLHVLDL 381 (559)
Q Consensus 315 ~~~~~~~~~~~~~yd~~t~~------W~~~~~~~~~p~--~r~~~~~~~~----~~~~l-~v~GG~~~~~~~~dv~~~d~ 381 (559)
.+ ..+.+||+.+.. +..+.... .. ...-.++... .++.. ++.|+.+ ..+.+||+
T Consensus 89 ~d------g~i~iw~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~ 155 (397)
T 1sq9_A 89 FS------GDLLFYRITREDETKKVIFEKLDLLD--SDMKKHSFWALKWGASNDRLLSHRLVATDVK-----GTTYIWKF 155 (397)
T ss_dssp TT------SCEEEEEEEECTTTCCEEEEEECCSC--TTGGGSCEEEEEEECCC----CEEEEEEETT-----SCEEEEEE
T ss_pred CC------CCEEEEEccCCcccccccceeecccc--cccCCCcEEEEEEeeccCCCCceEEEEEeCC-----CcEEEEeC
Confidence 54 347888887766 66664320 00 1223344444 34445 7777653 34777777
Q ss_pred CC
Q 008611 382 QT 383 (559)
Q Consensus 382 ~~ 383 (559)
.+
T Consensus 156 ~~ 157 (397)
T 1sq9_A 156 HP 157 (397)
T ss_dssp ES
T ss_pred Cc
Confidence 65
No 208
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=83.79 E-value=7 Score=39.43 Aligned_cols=104 Identities=15% Similarity=0.147 Sum_probs=50.9
Q ss_pred EEEEeccCCCCCCcceEEEEECCCC---eEEEeccCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCcCceEEEECCC
Q 008611 258 LLSIAGHTKDPSEIIQVKVFDLQTC---SWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLET 332 (559)
Q Consensus 258 lyv~GG~~~~~~~~~~v~~yd~~t~---~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t 332 (559)
+++.|+.++ .+.+||+.+. .+..-....-......-.+++.. ++.+++.|+.+ +.|.+||+.+
T Consensus 196 ~l~s~~~dg------~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~d------g~i~i~d~~~ 263 (430)
T 2xyi_A 196 YLLSASDDH------TICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD------QKLMIWDTRN 263 (430)
T ss_dssp EEEEECTTS------CEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETT------SEEEEEETTC
T ss_pred eEEEEeCCC------eEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCC------CeEEEEECCC
Confidence 777777644 4888888762 12111000000111112222222 45677777643 4588999876
Q ss_pred Cc----eEEecCCCCCCCcccccEEEEEc-CCEEEEEcCCCCCCCcCceEEEECCC
Q 008611 333 MT----WDEIDAVGVPPSPRSDHAAAVHA-ERYLLIFGGGSHAACFNDLHVLDLQT 383 (559)
Q Consensus 333 ~~----W~~~~~~~~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~dv~~~d~~~ 383 (559)
.. -..+.. ....-.+++... +..+++.|+.+ ..|.+||+.+
T Consensus 264 ~~~~~~~~~~~~-----~~~~v~~i~~~p~~~~~l~tg~~d-----g~v~vwd~~~ 309 (430)
T 2xyi_A 264 NNTSKPSHTVDA-----HTAEVNCLSFNPYSEFILATGSAD-----KTVALWDLRN 309 (430)
T ss_dssp SCSSSCSEEEEC-----CSSCEEEEEECSSCTTEEEEEETT-----SEEEEEETTC
T ss_pred CCCCcceeEeec-----CCCCeEEEEeCCCCCCEEEEEeCC-----CeEEEEeCCC
Confidence 52 112211 111112333333 33478888754 3588899875
No 209
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=83.69 E-value=1.6 Score=46.36 Aligned_cols=71 Identities=21% Similarity=0.327 Sum_probs=51.6
Q ss_pred ccCCCChhhHHHHhhheeeeecCCCCCCC--CCCCC------hhh--------------------------hhhH-----
Q 008611 36 LTSKFSNDSALLLYALYQQATVGPCNVPK--PSSWS------PVE--------------------------QSKW----- 76 (559)
Q Consensus 36 ~~~~~~~~~~l~ly~l~kqa~~g~~~~~~--p~~~~------~~~--------------------------~~k~----- 76 (559)
+.-+.+.++.++|=||.-|+..||++... +.+-+ +.. ...|
T Consensus 335 G~~~~~~e~a~~LAAl~lQ~~~GD~~~~~~~~~l~~~lP~~~l~~~~~~~~k~~s~~~~~l~~~~~~~~~~~~~W~~~~~ 414 (555)
T 3au4_A 335 GHHPAPEENLQVLAALRLQYLQGDYTLHAAIPPLEEVYSLQRLKARISQSTKTFSFRTGSVVRQKVEEEQMLDMWIKEEV 414 (555)
T ss_dssp TCSCCCHHHHHHHHHHHHHHHHCSCCTTCCCCCGGGTSCCHHHHHHHHHTTCCEECCTTSCCEECCCCHHHHHHHTHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHcCCCccccchhhhhhhCCHHHhhhhhccccccccccccccccccchhhhhHHHHHHHHH
Confidence 45567899999999999999999987642 11100 000 1123
Q ss_pred --------HHHhcCCCCCHHHHHHHHHHHHHHhCCCccc
Q 008611 77 --------KSWQGLGNMATTEAMRLFVKILEEEDPGWYS 107 (559)
Q Consensus 77 --------~aw~~~~~~s~~~a~~~yv~~~~~~~~~~~~ 107 (559)
+.|+++.|||++||+.+|++++.++ |.|..
T Consensus 415 ~~~~~~I~~~~~~~~g~s~~eA~~~yL~~~~~l-p~yG~ 452 (555)
T 3au4_A 415 SSARASIIDKWRKFQGMNQEQAMAKYMALIKEW-PGYGS 452 (555)
T ss_dssp HHHHHHHHHHHHTTTTCCHHHHHHHHHHHHTTS-TTTTC
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC-CCcCc
Confidence 5689999999999999999999877 66543
No 210
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=83.48 E-value=11 Score=41.48 Aligned_cols=110 Identities=9% Similarity=0.010 Sum_probs=62.2
Q ss_pred CCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEEEECCCC
Q 008611 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETM 333 (559)
Q Consensus 255 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~ 333 (559)
++.|+++||.. ..+.+||+.++++..+... ..+......++... ++.|++-. . +.+.+||+.+.
T Consensus 482 ~g~lWi~~~t~------~Gl~~~d~~~~~~~~~~~~-~~~~~~~~~~i~~d~~g~lWigt-~-------~Gl~~~~~~~~ 546 (758)
T 3ott_A 482 EGNVWVLLYNN------KGIDKINPRTREVTKLFAD-ELTGEKSPNYLLCDEDGLLWVGF-H-------GGVMRINPKDE 546 (758)
T ss_dssp TSCEEEEETTC------SSEEEEETTTTEEEEECTT-TSCGGGCEEEEEECTTSCEEEEE-T-------TEEEEECC--C
T ss_pred CCCEEEEccCC------CCcEEEeCCCCceEEecCC-CcCCCcccceEEECCCCCEEEEe-c-------CceEEEecCCC
Confidence 46788876653 3489999999999887432 12111111222222 45788633 1 23889999888
Q ss_pred ceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEec
Q 008611 334 TWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRP 389 (559)
Q Consensus 334 ~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~ 389 (559)
.+...... ..|. ..-++++. .++.|+|... +.+.+||+.+.+....
T Consensus 547 ~~~~~~~~-gl~~-~~i~~i~~-~~g~lWi~t~-------~Gl~~~~~~~~~~~~~ 592 (758)
T 3ott_A 547 SQQSISFG-SFSN-NEILSMTC-VKNSIWVSTT-------NGLWIIDRKTMDARQQ 592 (758)
T ss_dssp CCCBCCCC-C----CCEEEEEE-ETTEEEEEES-------SCEEEEETTTCCEEEC
T ss_pred ceEEeccc-CCCc-cceEEEEE-CCCCEEEECC-------CCeEEEcCCCceeEEe
Confidence 87665321 2232 12223333 4677887653 3489999998877654
No 211
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=83.36 E-value=2.3 Score=31.26 Aligned_cols=42 Identities=21% Similarity=0.230 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhh
Q 008611 512 TEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTD 553 (559)
Q Consensus 512 ~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~ 553 (559)
++..|.+|..++.+++...+....++..|..++..+..++..
T Consensus 27 K~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 27 KEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666666666666666666666666666666655544
No 212
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=83.29 E-value=33 Score=32.85 Aligned_cols=169 Identities=11% Similarity=0.023 Sum_probs=86.2
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCC--eEEEeeeccccCCCCCCCCCCCCCCccc-eeEEe--CCEEEEEeccCCCCC
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSW--AWSKIQAKAVAESTESPSPALLTPCAGH-SLIPW--ENKLLSIAGHTKDPS 269 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~~~~~~~~~~p~~r~~~-~~~~~--~~~lyv~GG~~~~~~ 269 (559)
++.||+.... ...+.+||+... .-..+....... ......... .++.. ++.|||..++.
T Consensus 101 ~g~l~v~d~~-----~~~v~~~~~~g~~~~~~~~~~~~~~g-------~~~~~~~~P~~ia~~~~~g~lyv~d~~~---- 164 (329)
T 3fvz_A 101 DGNYWVTDVA-----LHQVFKLDPHSKEGPLLILGRSMQPG-------SDQNHFCQPTDVAVEPSTGAVFVSDGYC---- 164 (329)
T ss_dssp TSCEEEEETT-----TTEEEEECTTCSSCCSEEESBTTBCC-------CSTTCCSSEEEEEECTTTCCEEEEECSS----
T ss_pred CCCEEEEECC-----CCEEEEEeCCCCeEEEEEecccCCCC-------CCccccCCCcEEEEeCCCCeEEEEeCCC----
Confidence 5678887642 246889988654 222232111000 000111112 23332 57999987631
Q ss_pred CcceEEEEECCCCeEEEeccCCCC----CCCcc-ceEEEEE-C-CEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCC
Q 008611 270 EIIQVKVFDLQTCSWSTLKTYGKP----PVSRG-GQSVTLV-G-TSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVG 342 (559)
Q Consensus 270 ~~~~v~~yd~~t~~W~~~~~~g~~----p~~r~-~~~~~~~-~-~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~ 342 (559)
...|.+||+....-..+...+.. +.... -+.+++. + +.|||.... .+.|.+||+.+.+....-..
T Consensus 165 -~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~------~~~I~~~~~~~G~~~~~~~~- 236 (329)
T 3fvz_A 165 -NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE------NGRIQCFKTDTKEFVREIKH- 236 (329)
T ss_dssp -CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT------TTEEEEEETTTCCEEEEECC-
T ss_pred -CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC------CCEEEEEECCCCcEEEEEec-
Confidence 24789999655444444322211 11111 2334443 3 789998653 34689999987776543221
Q ss_pred CCCCcccccEEEEEcCCEEEEEcCCCC--CCCcCceEEEECCCCeeEec
Q 008611 343 VPPSPRSDHAAAVHAERYLLIFGGGSH--AACFNDLHVLDLQTMEWSRP 389 (559)
Q Consensus 343 ~~p~~r~~~~~~~~~~~~l~v~GG~~~--~~~~~dv~~~d~~~~~W~~~ 389 (559)
......-.+++... +.+|+..|... ......+.++|+.+.+....
T Consensus 237 -~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~ 283 (329)
T 3fvz_A 237 -ASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDV 283 (329)
T ss_dssp -TTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEE
T ss_pred -cccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEE
Confidence 11122222344443 66777766321 22234789999887765543
No 213
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=83.28 E-value=29 Score=32.20 Aligned_cols=144 Identities=13% Similarity=0.061 Sum_probs=66.1
Q ss_pred ECCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCCCCCcce
Q 008611 194 VQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQ 273 (559)
Q Consensus 194 ~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~ 273 (559)
.++.+++.|+.+ ..+.+||+.+..-...-.. ...........-++.+++.|+.++ .
T Consensus 27 ~~~~~l~s~~~d-----g~v~vw~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~l~~~~~dg------~ 82 (313)
T 3odt_A 27 VDDSKVASVSRD-----GTVRLWSKDDQWLGTVVYT-------------GQGFLNSVCYDSEKELLLFGGKDT------M 82 (313)
T ss_dssp EETTEEEEEETT-----SEEEEEEESSSEEEEEEEE-------------CSSCEEEEEEETTTTEEEEEETTS------C
T ss_pred cCCCEEEEEEcC-----CcEEEEECCCCEEEEEeec-------------CCccEEEEEECCCCCEEEEecCCC------e
Confidence 455556666633 3688889877654433221 111111112222677777787654 3
Q ss_pred EEEEECCCCe-EEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccccE
Q 008611 274 VKVFDLQTCS-WSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHA 352 (559)
Q Consensus 274 v~~yd~~t~~-W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~ 352 (559)
+..+++.... ...+.. .............++.+++.|+.+ ..+.+||.......... ....-.+
T Consensus 83 i~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~l~~~~~d------~~i~~~d~~~~~~~~~~------~~~~v~~ 147 (313)
T 3odt_A 83 INGVPLFATSGEDPLYT---LIGHQGNVCSLSFQDGVVISGSWD------KTAKVWKEGSLVYNLQA------HNASVWD 147 (313)
T ss_dssp EEEEETTCCTTSCC-CE---ECCCSSCEEEEEEETTEEEEEETT------SEEEEEETTEEEEEEEC------CSSCEEE
T ss_pred EEEEEeeecCCCCcccc---hhhcccCEEEEEecCCEEEEEeCC------CCEEEEcCCcEEEeccc------CCCceeE
Confidence 6666665431 111110 111111222233355666667653 34777883222222111 1111223
Q ss_pred EEEEc-CCEEEEEcCCCCCCCcCceEEEEC
Q 008611 353 AAVHA-ERYLLIFGGGSHAACFNDLHVLDL 381 (559)
Q Consensus 353 ~~~~~-~~~l~v~GG~~~~~~~~dv~~~d~ 381 (559)
+.... ++..++.|+.+ ..+.+||.
T Consensus 148 ~~~~~~~~~~l~~~~~d-----~~i~i~d~ 172 (313)
T 3odt_A 148 AKVVSFSENKFLTASAD-----KTIKLWQN 172 (313)
T ss_dssp EEEEETTTTEEEEEETT-----SCEEEEET
T ss_pred EEEccCCCCEEEEEECC-----CCEEEEec
Confidence 33333 34466666643 34778883
No 214
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=83.10 E-value=23 Score=33.38 Aligned_cols=144 Identities=16% Similarity=0.123 Sum_probs=72.6
Q ss_pred CcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCC--CccceeEEeCC-EEEEEeccCCCCCCcceEEEEECCCCeEEEe
Q 008611 211 SDMHILDLRSWAWSKIQAKAVAESTESPSPALLTP--CAGHSLIPWEN-KLLSIAGHTKDPSEIIQVKVFDLQTCSWSTL 287 (559)
Q Consensus 211 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~--r~~~~~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 287 (559)
+.+.++|+.+++-...-... .. +..+.+..-++ .+|+.++. ...++++|+.+.+-...
T Consensus 11 ~~v~~~d~~~~~~~~~~~~~-------------~~~~~~~~~~~s~dg~~l~v~~~~------~~~v~~~d~~~~~~~~~ 71 (337)
T 1pby_B 11 DKLVVIDTEKMAVDKVITIA-------------DAGPTPMVPMVAPGGRIAYATVNK------SESLVKIDLVTGETLGR 71 (337)
T ss_dssp TEEEEEETTTTEEEEEEECT-------------TCTTCCCCEEECTTSSEEEEEETT------TTEEEEEETTTCCEEEE
T ss_pred CeEEEEECCCCcEEEEEEcC-------------CCCCCccceEEcCCCCEEEEEeCC------CCeEEEEECCCCCeEee
Confidence 57899999887654432221 10 11112222244 67776643 24699999988775432
Q ss_pred ccCCCCCC--CccceEEEEE-CC-EEEEEcCc---CCCCC--CcCceEEEECCCCceEEecCCCCCCCcccccEEEEEcC
Q 008611 288 KTYGKPPV--SRGGQSVTLV-GT-SLVIFGGE---DAKRS--LLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAE 358 (559)
Q Consensus 288 ~~~g~~p~--~r~~~~~~~~-~~-~lyv~GG~---~~~~~--~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~ 358 (559)
-..+. +. ...-+.++.. ++ .||+.... ..... ..+.+++||+.+.+....-..+ ..-+++++..+
T Consensus 72 ~~~~~-~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-----~~~~~~~~s~d 145 (337)
T 1pby_B 72 IDLST-PEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-----RQITMLAWARD 145 (337)
T ss_dssp EECCB-TTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-----SSCCCEEECTT
T ss_pred EEcCC-cccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC-----CCcceeEECCC
Confidence 21111 00 0011223333 33 67766421 00000 1367999999887654432221 11233444444
Q ss_pred C-EEEEEcCCCCCCCcCceEEEECCCCeeE
Q 008611 359 R-YLLIFGGGSHAACFNDLHVLDLQTMEWS 387 (559)
Q Consensus 359 ~-~l~v~GG~~~~~~~~dv~~~d~~~~~W~ 387 (559)
+ +||+.+ +.+++||+.+.+-.
T Consensus 146 g~~l~~~~--------~~i~~~d~~~~~~~ 167 (337)
T 1pby_B 146 GSKLYGLG--------RDLHVMDPEAGTLV 167 (337)
T ss_dssp SSCEEEES--------SSEEEEETTTTEEE
T ss_pred CCEEEEeC--------CeEEEEECCCCcEe
Confidence 4 466652 35999999887644
No 215
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=82.87 E-value=41 Score=33.65 Aligned_cols=111 Identities=14% Similarity=0.138 Sum_probs=63.5
Q ss_pred CCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCcCceEEEECCC
Q 008611 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLET 332 (559)
Q Consensus 255 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t 332 (559)
++.||+.... ...+.+||+.++.-..+...+.. .+ ++.. ++.||+...... ..++.|++.+
T Consensus 141 ~g~lyv~d~~------~~~I~~id~~~g~~~~~~~~~~~-----~~-ia~~~~g~~l~~~d~~~~-----~~I~~~d~~~ 203 (409)
T 3hrp_A 141 NNTVLAYQRD------DPRVRLISVDDNKVTTVHPGFKG-----GK-PAVTKDKQRVYSIGWEGT-----HTVYVYMKAS 203 (409)
T ss_dssp TTEEEEEETT------TTEEEEEETTTTEEEEEEETCCB-----CB-CEECTTSSEEEEEBSSTT-----CEEEEEEGGG
T ss_pred CCCEEEEecC------CCcEEEEECCCCEEEEeeccCCC-----Cc-eeEecCCCcEEEEecCCC-----ceEEEEEcCC
Confidence 6789998653 35799999998887776532211 12 2222 346666653211 1689999865
Q ss_pred Cc-eEEecCCCCCCCcccccEEEEEc-CCEEEEEcCCCCCCCcCceEEEECCCCeeEec
Q 008611 333 MT-WDEIDAVGVPPSPRSDHAAAVHA-ERYLLIFGGGSHAACFNDLHVLDLQTMEWSRP 389 (559)
Q Consensus 333 ~~-W~~~~~~~~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~ 389 (559)
.. ...+.... .+....-+++++.. ++.||+..+ ...+++||+.+.....+
T Consensus 204 ~~~~~~~g~~~-~~~~~~p~~iav~p~~g~lyv~d~------~~~I~~~d~~~~~~~~~ 255 (409)
T 3hrp_A 204 GWAPTRIGQLG-STFSGKIGAVALDETEEWLYFVDS------NKNFGRFNVKTQEVTLI 255 (409)
T ss_dssp TTCEEEEEECC-TTSCSCCCBCEECTTSSEEEEECT------TCEEEEEETTTCCEEEE
T ss_pred CceeEEeeecc-chhcCCcEEEEEeCCCCeEEEEEC------CCcEEEEECCCCCEEEE
Confidence 43 22331110 11222334556655 678888432 23699999988765544
No 216
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=82.84 E-value=7.7 Score=38.50 Aligned_cols=114 Identities=10% Similarity=0.024 Sum_probs=59.7
Q ss_pred CCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccC--CCCC-CCccceEEEEE-CC-EEEEEcCcCCCCCCcCceEEEE
Q 008611 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTY--GKPP-VSRGGQSVTLV-GT-SLVIFGGEDAKRSLLNDLHILD 329 (559)
Q Consensus 255 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~--g~~p-~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~yd 329 (559)
++.+++.|+.++ .+.+||+.+......... .... ....-.+++.. ++ .+++.|+.+ ..+.+||
T Consensus 93 ~~~~l~s~s~dg------~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~d------g~i~iwd 160 (402)
T 2aq5_A 93 NDNVIASGSEDC------TVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD------NVILVWD 160 (402)
T ss_dssp CTTEEEEEETTS------EEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETT------SCEEEEE
T ss_pred CCCEEEEEeCCC------eEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCC------CEEEEEE
Confidence 567888887643 588888887643110000 0000 01111122222 22 577777754 3488999
Q ss_pred CCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeE
Q 008611 330 LETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWS 387 (559)
Q Consensus 330 ~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~ 387 (559)
+.+.+....-.. ......-.+++...++.+++.|+.+ ..+.+||+.+..-.
T Consensus 161 ~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~ 211 (402)
T 2aq5_A 161 VGTGAAVLTLGP--DVHPDTIYSVDWSRDGALICTSCRD-----KRVRVIEPRKGTVV 211 (402)
T ss_dssp TTTTEEEEEECT--TTCCSCEEEEEECTTSSCEEEEETT-----SEEEEEETTTTEEE
T ss_pred CCCCCccEEEec--CCCCCceEEEEECCCCCEEEEEecC-----CcEEEEeCCCCcee
Confidence 988765433210 0122222344444455577777643 46899999887543
No 217
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=82.72 E-value=28 Score=33.84 Aligned_cols=112 Identities=12% Similarity=0.030 Sum_probs=57.8
Q ss_pred cceEEEEECCCCeEEEeccCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCccc
Q 008611 271 IIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRS 349 (559)
Q Consensus 271 ~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~ 349 (559)
...++.+|+.+++-..+... .....+....- +++.+++............++.+|+.+.....+... .....
T Consensus 167 ~~~l~~~d~~~g~~~~l~~~----~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~---~~~~~ 239 (388)
T 3pe7_A 167 CCRLMRVDLKTGESTVILQE----NQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTH---AEGES 239 (388)
T ss_dssp CEEEEEEETTTCCEEEEEEE----SSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCC---CTTEE
T ss_pred cceEEEEECCCCceEEeecC----CccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeC---CCCcc
Confidence 46899999999887666421 11222222222 344444433322211245799999988777666432 11111
Q ss_pred ccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEec
Q 008611 350 DHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRP 389 (559)
Q Consensus 350 ~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~ 389 (559)
....+...++..+++.....+.....++++|+.+..-..+
T Consensus 240 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l 279 (388)
T 3pe7_A 240 CTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQL 279 (388)
T ss_dssp EEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEE
T ss_pred cccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEE
Confidence 2223333444333332221111122499999998876655
No 218
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=82.67 E-value=31 Score=32.16 Aligned_cols=160 Identities=13% Similarity=0.011 Sum_probs=83.1
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEE----eccC-----
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSI----AGHT----- 265 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~----GG~~----- 265 (559)
++.||+.... ...+++||+.+++...+.... ...+..+....++.-+|.||+. |...
T Consensus 79 dg~l~v~~~~-----~~~i~~~d~~~g~~~~~~~~~---------~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~ 144 (296)
T 3e5z_A 79 QGHLIACSHG-----LRRLERQREPGGEWESIADSF---------EGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGY 144 (296)
T ss_dssp TCCEEEEETT-----TTEEEEECSTTCCEEEEECEE---------TTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSS
T ss_pred CCcEEEEecC-----CCeEEEEcCCCCcEEEEeecc---------CCCCCCCCCCEEECCCCCEEEECCccccccccccc
Confidence 5678776431 146899999888887664321 0001111222223336788886 4321
Q ss_pred -C-CCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEEEECC-CCce-EEecC
Q 008611 266 -K-DPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLE-TMTW-DEIDA 340 (559)
Q Consensus 266 -~-~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~-t~~W-~~~~~ 340 (559)
. .......+++||+. ++...+.. ....+ .+++.. ++++++.+.. .+.+++||+. +... .....
T Consensus 145 ~~~~~~~~~~l~~~~~~-g~~~~~~~--~~~~~---~gi~~s~dg~~lv~~~~------~~~i~~~~~~~~g~~~~~~~~ 212 (296)
T 3e5z_A 145 GGEMELPGRWVFRLAPD-GTLSAPIR--DRVKP---NGLAFLPSGNLLVSDTG------DNATHRYCLNARGETEYQGVH 212 (296)
T ss_dssp CCCCCSSSCEEEEECTT-SCEEEEEC--CCSSE---EEEEECTTSCEEEEETT------TTEEEEEEECSSSCEEEEEEE
T ss_pred cccccCCCcEEEEECCC-CCEEEeec--CCCCC---ccEEECCCCCEEEEeCC------CCeEEEEEECCCCcCcCCCeE
Confidence 0 11123579999987 66555532 11111 223332 4555544432 2468999986 5555 21111
Q ss_pred -CCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEecc
Q 008611 341 -VGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (559)
Q Consensus 341 -~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~~ 390 (559)
......| .++++-.++.|||..+ +.|.+||+.......+.
T Consensus 213 ~~~~~~~p---~~i~~d~~G~l~v~~~-------~~v~~~~~~g~~~~~~~ 253 (296)
T 3e5z_A 213 FTVEPGKT---DGLRVDAGGLIWASAG-------DGVHVLTPDGDELGRVL 253 (296)
T ss_dssp ECCSSSCC---CSEEEBTTSCEEEEET-------TEEEEECTTSCEEEEEE
T ss_pred eeCCCCCC---CeEEECCCCCEEEEcC-------CeEEEECCCCCEEEEEE
Confidence 1111111 2355555677888762 45899999866555553
No 219
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=82.54 E-value=37 Score=35.97 Aligned_cols=122 Identities=16% Similarity=0.169 Sum_probs=66.1
Q ss_pred eeEEeCCEEEEEeccCCCCCCcceEEEEECCCCe--EEEeccCCCCCCCcc---ceEEEEECCEEEEEcCcCCCCCCcCc
Q 008611 250 SLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCS--WSTLKTYGKPPVSRG---GQSVTLVGTSLVIFGGEDAKRSLLND 324 (559)
Q Consensus 250 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~g~~p~~r~---~~~~~~~~~~lyv~GG~~~~~~~~~~ 324 (559)
+-++.++.||+.+.. +.++.+|..+++ |+.-........+.+ ..+.++.+++||+... ...
T Consensus 63 ~P~v~~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~-------dg~ 128 (582)
T 1flg_A 63 QAIVSDGVIYVTASY-------SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL-------DAS 128 (582)
T ss_dssp CCEEETTEEEEEETT-------TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET-------TTE
T ss_pred ccEEECCEEEEEcCC-------CCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC-------CCE
Confidence 345679999998653 239999998775 887542211111111 1234567888887532 245
Q ss_pred eEEEECCCC--ceEEecCCCCCCCcc--cccEEEEEcC----CEEEEEcCCCC-CCCcCceEEEECCCC--eeEe
Q 008611 325 LHILDLETM--TWDEIDAVGVPPSPR--SDHAAAVHAE----RYLLIFGGGSH-AACFNDLHVLDLQTM--EWSR 388 (559)
Q Consensus 325 ~~~yd~~t~--~W~~~~~~~~~p~~r--~~~~~~~~~~----~~l~v~GG~~~-~~~~~dv~~~d~~~~--~W~~ 388 (559)
|+.+|..|. .|+.-... +... ...+.++..+ ..++++|.... ...-..++.||..+. .|..
T Consensus 129 l~AlD~~TG~~~W~~~~~~---~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~ 200 (582)
T 1flg_A 129 VVALNKNTGKVVWKKKFAD---HGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMR 200 (582)
T ss_dssp EEEEESSSCCEEEEEECSC---GGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEE
T ss_pred EEEEECCCCCEEeeecCCC---CCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeec
Confidence 899999876 48754321 1111 1122233333 11344443211 112356999999876 4865
No 220
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=82.37 E-value=34 Score=32.31 Aligned_cols=166 Identities=6% Similarity=-0.014 Sum_probs=82.6
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEE----eccCC----
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSI----AGHTK---- 266 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~----GG~~~---- 266 (559)
+++||+.... ...+.+||+. ++...+.... ...+..+....++.-+|.||+. |-...
T Consensus 96 dG~l~v~~~~-----~~~v~~~~~~-g~~~~~~~~~---------~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~ 160 (305)
T 3dr2_A 96 QQRLVHCEHG-----RRAITRSDAD-GQAHLLVGRY---------AGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGC 160 (305)
T ss_dssp TSCEEEEETT-----TTEEEEECTT-SCEEEEECEE---------TTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSC
T ss_pred CCCEEEEECC-----CCEEEEECCC-CCEEEEEecc---------CCCccCCCCCEEECCCCCEEEeCcCCCcccccccc
Confidence 5677776321 1358889886 6666654321 0001111122222236788885 32210
Q ss_pred ---CCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEE-CC-EEEEEcCcCCCCCCcCceEEEECCCCceEEecCC
Q 008611 267 ---DPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GT-SLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAV 341 (559)
Q Consensus 267 ---~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~ 341 (559)
.......+++||+.+++++.+. . ...+ ..++.. ++ .||+........ ..+.|++|++...........
T Consensus 161 ~~~~~~~~~~v~~~d~~~g~~~~~~-~--~~~p---~gl~~spdg~~lyv~~~~~~~~-~~~~i~~~~~~~~~l~~~~~~ 233 (305)
T 3dr2_A 161 PADPELAHHSVYRLPPDGSPLQRMA-D--LDHP---NGLAFSPDEQTLYVSQTPEQGH-GSVEITAFAWRDGALHDRRHF 233 (305)
T ss_dssp CCCCSSSCEEEEEECSSSCCCEEEE-E--ESSE---EEEEECTTSSEEEEEECCC----CCCEEEEEEEETTEEEEEEEE
T ss_pred ccccccCCCeEEEEcCCCCcEEEEe-c--CCCC---cceEEcCCCCEEEEEecCCcCC-CCCEEEEEEecCCCccCCeEE
Confidence 0112467999999888877664 1 1111 223333 33 577765421110 125699999876543221111
Q ss_pred CCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEecc
Q 008611 342 GVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (559)
Q Consensus 342 ~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~~ 390 (559)
...+. ..-.++++-.++.||+..+ +.|++||+.......+.
T Consensus 234 ~~~~~-~~pdgi~~d~~G~lwv~~~-------~gv~~~~~~g~~~~~~~ 274 (305)
T 3dr2_A 234 ASVPD-GLPDGFCVDRGGWLWSSSG-------TGVCVFDSDGQLLGHIP 274 (305)
T ss_dssp ECCSS-SCCCSEEECTTSCEEECCS-------SEEEEECTTSCEEEEEE
T ss_pred EECCC-CCCCeEEECCCCCEEEecC-------CcEEEECCCCCEEEEEE
Confidence 00111 1112345545566777542 34999999777666553
No 221
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=82.30 E-value=53 Score=34.58 Aligned_cols=81 Identities=15% Similarity=0.162 Sum_probs=47.2
Q ss_pred eEEEECCEEEEEccCCCCcccCcEEEEEcCCC--eEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCC
Q 008611 190 GAAVVQDKMYIYGGNHNGRYLSDMHILDLRSW--AWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKD 267 (559)
Q Consensus 190 ~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~ 267 (559)
+.++.++.||+... -..++++|..++ .|+.-.... ........+-+..++.+|+-.+....
T Consensus 110 ~~~~~~~~v~v~~~------dg~l~alD~~tG~~~W~~~~~~~-----------~~~~~~~~~P~v~~g~v~vg~~~~~~ 172 (571)
T 2ad6_A 110 GLAYGAGQIVKKQA------NGHLLALDAKTGKINWEVEVCDP-----------KVGSTLTQAPFVAKDTVLMGCSGAEL 172 (571)
T ss_dssp CCEEETTEEEEECT------TSEEEEEETTTCCEEEEEECCCG-----------GGTCBCCSCCEEETTEEEEECBCGGG
T ss_pred ccEEECCEEEEEeC------CCEEEEEECCCCCEEEEecCCCC-----------CccceeccCCEEECCEEEEEecCCcc
Confidence 45667899998754 246999999887 587542110 00001122334468888775432111
Q ss_pred CCCcceEEEEECCCCe--EEEec
Q 008611 268 PSEIIQVKVFDLQTCS--WSTLK 288 (559)
Q Consensus 268 ~~~~~~v~~yd~~t~~--W~~~~ 288 (559)
.....++.||+.+++ |+.-.
T Consensus 173 -~~~g~v~a~D~~tG~~~W~~~~ 194 (571)
T 2ad6_A 173 -GVRGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp -TCCCEEEEEETTTCCEEEEEES
T ss_pred -CCCCEEEEEECCCCcEEEEEcc
Confidence 123579999998765 87653
No 222
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=82.22 E-value=54 Score=34.57 Aligned_cols=69 Identities=16% Similarity=0.290 Sum_probs=40.6
Q ss_pred cCceEEEECCCCceEEecCCCCCCCcccccEEEEEcCC-EEEEEcCCCCCCCcCceEEEECCCCeeEeccCC-CCCCCC
Q 008611 322 LNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAER-YLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQ-GEIPTP 398 (559)
Q Consensus 322 ~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~-~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~~~~-~~~p~~ 398 (559)
.+.++..|..+.....+... +.++.-|...+..++ ++|+.... .+.|.++|..+++-...... +..|.|
T Consensus 319 ~g~v~~vd~~~~~~~~v~~i---~~~~~~~d~~~~pdgr~~~va~~~-----sn~V~ViD~~t~kl~~~i~vgg~~Php 389 (567)
T 1qks_A 319 TGKILLVDYTDLNNLKTTEI---SAERFLHDGGLDGSHRYFITAANA-----RNKLVVIDTKEGKLVAIEDTGGQTPHP 389 (567)
T ss_dssp TTEEEEEETTCSSEEEEEEE---ECCSSEEEEEECTTSCEEEEEEGG-----GTEEEEEETTTTEEEEEEECSSSSBCC
T ss_pred CCeEEEEecCCCccceeeee---eccccccCceECCCCCEEEEEeCC-----CCeEEEEECCCCcEEEEEeccCcCCCC
Confidence 35688899877665444332 345566666665544 45554332 46799999998864433222 344544
No 223
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=82.14 E-value=43 Score=35.33 Aligned_cols=200 Identities=12% Similarity=0.085 Sum_probs=100.6
Q ss_pred CcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe-CC-EEEEEeccCCCCCCcceEEEEECCCCeEEEec
Q 008611 211 SDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-EN-KLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLK 288 (559)
Q Consensus 211 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 288 (559)
..+++.|..+.....+... +..+.-|....- ++ ++|+... ..+.+.++|+.+++-...-
T Consensus 320 g~v~~vd~~~~~~~~v~~i-------------~~~~~~~d~~~~pdgr~~~va~~------~sn~V~ViD~~t~kl~~~i 380 (567)
T 1qks_A 320 GKILLVDYTDLNNLKTTEI-------------SAERFLHDGGLDGSHRYFITAAN------ARNKLVVIDTKEGKLVAIE 380 (567)
T ss_dssp TEEEEEETTCSSEEEEEEE-------------ECCSSEEEEEECTTSCEEEEEEG------GGTEEEEEETTTTEEEEEE
T ss_pred CeEEEEecCCCccceeeee-------------eccccccCceECCCCCEEEEEeC------CCCeEEEEECCCCcEEEEE
Confidence 4677777766554433322 234444544333 33 4455432 2467999999998755444
Q ss_pred cC-CCCCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEEEECCCCc-----eEEecCCCCCCCcccccEEEEEc-CCE
Q 008611 289 TY-GKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMT-----WDEIDAVGVPPSPRSDHAAAVHA-ERY 360 (559)
Q Consensus 289 ~~-g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~-----W~~~~~~~~~p~~r~~~~~~~~~-~~~ 360 (559)
.. |..|.+..+.....- .+.+|+.+-.. .+.|.++|..+.. |..+...... +.....+..+. +.+
T Consensus 381 ~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g-----~~~Vsvid~~~~~~~~~~~kvv~~i~~~--g~g~~~i~~~p~~~~ 453 (567)
T 1qks_A 381 DTGGQTPHPGRGANFVHPTFGPVWATSHMG-----DDSVALIGTDPEGHPDNAWKILDSFPAL--GGGSLFIKTHPNSQY 453 (567)
T ss_dssp ECSSSSBCCTTCEEEEETTTEEEEEEEBSS-----SSEEEEEECCTTTCTTTBTSEEEEEECS--CSCCCCEECCTTCSE
T ss_pred eccCcCCCCccceeeECCCCCcEEEeCCCC-----CCeEEEecCCCCCCccccCEEEEEEecC--CCCCEEEEeCCCCCe
Confidence 44 556655434333222 25677765321 2458888877633 7666543111 11111222333 357
Q ss_pred EEEEcCCC-CCCCcCceEEEECCCC-------eeEeccCC--CCCC--CCccccEEEEECCceecceeeeeeccCCCcEE
Q 008611 361 LLIFGGGS-HAACFNDLHVLDLQTM-------EWSRPTQQ--GEIP--TPRAGHAGVTIGENWFLGLSLVVSSYSGEDVI 428 (559)
Q Consensus 361 l~v~GG~~-~~~~~~dv~~~d~~~~-------~W~~~~~~--~~~p--~~R~~hs~~~~~~~~~iG~s~~~~~~~~~~~l 428 (559)
+||---.+ .....+.|.+||+.+. .+..+... ..++ ..|..|-... ..+.++
T Consensus 454 l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~G~~~ 517 (567)
T 1qks_A 454 LYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFN----------------KDGTEV 517 (567)
T ss_dssp EEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEEC----------------TTSSEE
T ss_pred EEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeEC----------------CCCCEE
Confidence 88854211 1112457999998765 23333210 0111 2233332111 114467
Q ss_pred EEEcCcCCCCcccEEEEeCCCcce
Q 008611 429 VAFGGYNGRYNNEVHVLKPSHKST 452 (559)
Q Consensus 429 ~v~GG~~~~~~~~v~~~d~~~~~~ 452 (559)
++--+......+.|.++|..+...
T Consensus 518 ~~s~~~~~~~~~~i~v~D~~t~~~ 541 (567)
T 1qks_A 518 WFSVWNGKDQESALVVVDDKTLEL 541 (567)
T ss_dssp EEEEECCTTSCCEEEEEETTTTEE
T ss_pred EEEeecCCCCCCcEEEEECCCceE
Confidence 665222123567899999988753
No 224
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=82.13 E-value=1.8 Score=46.45 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 521 AEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 521 ~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
+++++++.++++.+++.++++++++...+++.++++++
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444444555555555555555555555544
No 225
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=82.08 E-value=42 Score=33.27 Aligned_cols=114 Identities=18% Similarity=0.168 Sum_probs=59.4
Q ss_pred CCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCe
Q 008611 306 GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTME 385 (559)
Q Consensus 306 ~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~ 385 (559)
++.+++.|+.+ ..+.+||+.+.+-...-.. .+....-.++++..++.+++.|+.+ ..+.+||+.+..
T Consensus 181 ~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~--~~h~~~v~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~~~ 247 (437)
T 3gre_A 181 EKSLLVALTNL------SRVIIFDIRTLERLQIIEN--SPRHGAVSSICIDEECCVLILGTTR-----GIIDIWDIRFNV 247 (437)
T ss_dssp SCEEEEEEETT------SEEEEEETTTCCEEEEEEC--CGGGCCEEEEEECTTSCEEEEEETT-----SCEEEEETTTTE
T ss_pred CCCEEEEEeCC------CeEEEEeCCCCeeeEEEcc--CCCCCceEEEEECCCCCEEEEEcCC-----CeEEEEEcCCcc
Confidence 35777777753 3588999987654332111 1112222334444456677777754 358899998765
Q ss_pred eEeccCCCCCCCCccccEEEEECCceecceeeeeeccCCCcEEEEEcCcCCCCcccEEEEeCCCcc
Q 008611 386 WSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSHKS 451 (559)
Q Consensus 386 W~~~~~~~~~p~~R~~hs~~~~~~~~~iG~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~~d~~~~~ 451 (559)
....-. .+ ......++.+.. .....+.+++.|+.++ .|.+||..+..
T Consensus 248 ~~~~~~---~~-~~~~v~~~~~~~-----------~~s~~~~~l~s~~~dg----~i~iwd~~~~~ 294 (437)
T 3gre_A 248 LIRSWS---FG-DHAPITHVEVCQ-----------FYGKNSVIVVGGSSKT----FLTIWNFVKGH 294 (437)
T ss_dssp EEEEEB---CT-TCEEEEEEEECT-----------TTCTTEEEEEEESTTE----EEEEEETTTTE
T ss_pred EEEEEe---cC-CCCceEEEEecc-----------ccCCCccEEEEEcCCC----cEEEEEcCCCc
Confidence 533210 00 011111221110 1222346777777554 68888887653
No 226
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=81.83 E-value=3.5 Score=31.03 Aligned_cols=22 Identities=14% Similarity=0.087 Sum_probs=10.3
Q ss_pred HHHHhhhHHHHHHHHHhhhhhH
Q 008611 533 EKLQSIQLKQDLTEAESQNTDL 554 (559)
Q Consensus 533 ~~~~~~~l~~~~~~~~~~~~~~ 554 (559)
...++++|+++...-+.++..|
T Consensus 53 L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 53 LERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555444444443
No 227
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=81.53 E-value=29 Score=37.32 Aligned_cols=111 Identities=7% Similarity=-0.128 Sum_probs=56.2
Q ss_pred cEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCC---CCCcceEEEEECCCCeEEEec
Q 008611 212 DMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKD---PSEIIQVKVFDLQTCSWSTLK 288 (559)
Q Consensus 212 ~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~---~~~~~~v~~yd~~t~~W~~~~ 288 (559)
.++++|+.+++-..+-... .............-+++.++++..... ......++++|+.+.+-..+.
T Consensus 38 ~i~~~d~~~g~~~~~~~~~----------~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~ 107 (723)
T 1xfd_A 38 TVRLWNVETNTSTVLIEGK----------KIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLD 107 (723)
T ss_dssp CEEEBCGGGCCCEEEECTT----------TTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECC
T ss_pred CEEEEECCCCcEEEEeccc----------cccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEecc
Confidence 6888888887655443211 000001111122226766666654322 123478999999998766564
Q ss_pred cCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCCceEEecC
Q 008611 289 TYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDA 340 (559)
Q Consensus 289 ~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~ 340 (559)
... ....+.......-+++.++|+.. +.++++|+.+.....+..
T Consensus 108 ~~~-~~~~~~~~~~~SPdG~~la~~~~-------~~i~~~~~~~g~~~~~~~ 151 (723)
T 1xfd_A 108 PPE-VSNAKLQYAGWGPKGQQLIFIFE-------NNIYYCAHVGKQAIRVVS 151 (723)
T ss_dssp CTT-CCSCCCSBCCBCSSTTCEEEEET-------TEEEEESSSSSCCEEEEC
T ss_pred CCc-cccccccccEECCCCCEEEEEEC-------CeEEEEECCCCceEEEec
Confidence 221 11111111112224544444432 368888888877666643
No 228
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=81.25 E-value=3.4 Score=32.33 Aligned_cols=27 Identities=7% Similarity=0.056 Sum_probs=13.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHH
Q 008611 510 ETTEHLIATLKAEKEELESSLSKEKLQ 536 (559)
Q Consensus 510 ~~~~~~~~~l~~e~~~~~~~l~~~~~~ 536 (559)
++.|..+...+.+|....++|+.++++
T Consensus 38 eeLQ~Ei~~~E~QL~iArQKLkdAe~~ 64 (107)
T 2k48_A 38 QELQENITAHEQQLVTARQKLKDAEKA 64 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555444443
No 229
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=81.13 E-value=37 Score=36.19 Aligned_cols=124 Identities=13% Similarity=0.139 Sum_probs=65.4
Q ss_pred eeEEeCCEEEEEeccCCCCCCcceEEEEEC-CCCe--EEEeccCCC--CCCCcc---ceEEEE--ECCE----EEEEcCc
Q 008611 250 SLIPWENKLLSIAGHTKDPSEIIQVKVFDL-QTCS--WSTLKTYGK--PPVSRG---GQSVTL--VGTS----LVIFGGE 315 (559)
Q Consensus 250 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~-~t~~--W~~~~~~g~--~p~~r~---~~~~~~--~~~~----lyv~GG~ 315 (559)
+-++.++.||+.+.. ...++.||. .+++ |+.-..... .+..++ ..+.++ .+++ ||+...
T Consensus 57 tP~v~~g~vyv~~~~------~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~- 129 (599)
T 1w6s_A 57 APLVVDGKMYIHTSF------PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL- 129 (599)
T ss_dssp CCEEETTEEEEECST------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT-
T ss_pred ccEEECCEEEEEeCC------CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC-
Confidence 345668999998652 246899999 7764 887542110 010111 122344 4666 776432
Q ss_pred CCCCCCcCceEEEECCCCc--eEEecCCCCCCCcccccEEEEEcCCEEEEEcCCC-CCCCcCceEEEECCCC--eeEec
Q 008611 316 DAKRSLLNDLHILDLETMT--WDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGS-HAACFNDLHVLDLQTM--EWSRP 389 (559)
Q Consensus 316 ~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~-~~~~~~dv~~~d~~~~--~W~~~ 389 (559)
-..++.+|..|.+ |+.-... ..+......+.++. ++.||+ |... .......|+.||..+. .|+.-
T Consensus 130 ------dg~l~AlDa~TG~~~W~~~~~~-~~~~~~~~ssP~v~-~g~V~v-g~~g~e~g~~g~v~A~D~~TG~~~W~~~ 199 (599)
T 1w6s_A 130 ------DGNVAALNAETGETVWKVENSD-IKVGSTLTIAPYVV-KDKVII-GSSGAELGVRGYLTAYDVKTGEQVWRAY 199 (599)
T ss_dssp ------TSEEEEEETTTCCEEEEEECCC-GGGTCBCCSCCEEE-TTEEEE-CCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred ------CCEEEEEECCCCCEEEeecCCC-CCccceeecCCEEE-CCEEEE-EecccccCCCCeEEEEECCCCcEEEEEc
Confidence 2458999987764 8754211 00000111222333 665554 4321 1112356999999876 48764
No 230
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=80.92 E-value=48 Score=33.17 Aligned_cols=67 Identities=12% Similarity=0.021 Sum_probs=38.8
Q ss_pred CEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCCCCCcceEE
Q 008611 196 DKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVK 275 (559)
Q Consensus 196 ~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~ 275 (559)
+.+++.|+.+ ..+.+||+.+......-... ......+.+.. ++.+++.||.+ ..+.
T Consensus 210 ~~~l~s~~~d-----~~i~vwd~~~~~~~~~~~~~------------h~~~v~~~~~s-d~~~l~s~~~d------~~v~ 265 (450)
T 2vdu_B 210 HQFIITSDRD-----EHIKISHYPQCFIVDKWLFG------------HKHFVSSICCG-KDYLLLSAGGD------DKIF 265 (450)
T ss_dssp CEEEEEEETT-----SCEEEEEESCTTCEEEECCC------------CSSCEEEEEEC-STTEEEEEESS------SEEE
T ss_pred CcEEEEEcCC-----CcEEEEECCCCceeeeeecC------------CCCceEEEEEC-CCCEEEEEeCC------CeEE
Confidence 6677777743 46888888776543221110 11111222223 77777788754 3688
Q ss_pred EEECCCCeEEE
Q 008611 276 VFDLQTCSWST 286 (559)
Q Consensus 276 ~yd~~t~~W~~ 286 (559)
+||+.+++...
T Consensus 266 vwd~~~~~~~~ 276 (450)
T 2vdu_B 266 AWDWKTGKNLS 276 (450)
T ss_dssp EEETTTCCEEE
T ss_pred EEECCCCcEee
Confidence 99998876443
No 231
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=80.64 E-value=39 Score=31.87 Aligned_cols=157 Identities=6% Similarity=-0.098 Sum_probs=78.5
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe-CCEEEEEeccCCCCCCcce
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-ENKLLSIAGHTKDPSEIIQ 273 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~ 273 (559)
++.||+.+-. .+.+++|++ ++..+.+... ... -++.+.- +++||+.... ...
T Consensus 56 g~~l~~~d~~-----~~~i~~~~~-~g~~~~~~~~--------------~~~-~~gl~~d~dG~l~v~~~~------~~~ 108 (305)
T 3dr2_A 56 QRTLVWSDLV-----GRRVLGWRE-DGTVDVLLDA--------------TAF-TNGNAVDAQQRLVHCEHG------RRA 108 (305)
T ss_dssp GTEEEEEETT-----TTEEEEEET-TSCEEEEEES--------------CSC-EEEEEECTTSCEEEEETT------TTE
T ss_pred CCEEEEEECC-----CCEEEEEeC-CCCEEEEeCC--------------CCc-cceeeECCCCCEEEEECC------CCE
Confidence 4567777542 245889988 4555544321 111 1222222 5787776321 236
Q ss_pred EEEEECCCCeEEEeccCCCCCCCccceEEEEE-CCEEEEE----cCcCC-------CCCCcCceEEEECCCCceEEecCC
Q 008611 274 VKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIF----GGEDA-------KRSLLNDLHILDLETMTWDEIDAV 341 (559)
Q Consensus 274 v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~----GG~~~-------~~~~~~~~~~yd~~t~~W~~~~~~ 341 (559)
+.+||+. ++.+.+...........-..++.. ++.||+. |-... .......|++||+.+.++..+. .
T Consensus 109 v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~ 186 (305)
T 3dr2_A 109 ITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-D 186 (305)
T ss_dssp EEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-E
T ss_pred EEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-c
Confidence 8889886 666665421000000111123332 5688885 43210 0011356999999888887764 1
Q ss_pred CCCCCcccccEEEEEcCC-EEEEEcCCCCCCCcCceEEEECCCCe
Q 008611 342 GVPPSPRSDHAAAVHAER-YLLIFGGGSHAACFNDLHVLDLQTME 385 (559)
Q Consensus 342 ~~~p~~r~~~~~~~~~~~-~l~v~GG~~~~~~~~dv~~~d~~~~~ 385 (559)
... -..+++..++ .||+..........+.|++||+....
T Consensus 187 --~~~---p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~ 226 (305)
T 3dr2_A 187 --LDH---PNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA 226 (305)
T ss_dssp --ESS---EEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE
T ss_pred --CCC---CcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC
Confidence 111 1234444444 57776432111112569999987654
No 232
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=80.54 E-value=18 Score=34.65 Aligned_cols=151 Identities=11% Similarity=0.064 Sum_probs=71.0
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe--C--CEEEEEeccCCCCCC
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--E--NKLLSIAGHTKDPSE 270 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~--~~lyv~GG~~~~~~~ 270 (559)
++.+++.||.+ ..+.++|..+..|..+..... .... -..+.+ + +.+++.||.+.
T Consensus 164 ~~~~l~s~s~D-----~~i~iW~~~~~~~~~~~~~~~-----------h~~~--v~~~~~~~~~~~~~l~s~s~D~---- 221 (330)
T 2hes_X 164 SEALLASSSYD-----DTVRIWKDYDDDWECVAVLNG-----------HEGT--VWSSDFDKTEGVFRLCSGSDDS---- 221 (330)
T ss_dssp SSSEEEEEETT-----SCEEEEEEETTEEEEEEEECC-----------CSSC--EEEEEECCSSSSCEEEEEETTS----
T ss_pred CCCEEEEEcCC-----CeEEEEECCCCCeeEEEEccC-----------CCCc--EEEEEecCCCCeeEEEEEeCCC----
Confidence 45667777743 357778888887776654421 0111 111222 2 34566666543
Q ss_pred cceEEEEECCC------CeEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCC
Q 008611 271 IIQVKVFDLQT------CSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVP 344 (559)
Q Consensus 271 ~~~v~~yd~~t------~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~ 344 (559)
.+.++|+.+ ..|..+.... ......-.+++...+.+++.||.++ .+.+||..+..|..+.... .
T Consensus 222 --~v~iw~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~s~~~~l~s~~~dg------~v~iw~~~~~~~~~~~~~~-~ 291 (330)
T 2hes_X 222 --TVRVWKYMGDDEDDQQEWVCEAILP-DVHKRQVYNVAWGFNGLIASVGADG------VLAVYEEVDGEWKVFAKRA-L 291 (330)
T ss_dssp --CEEEEEEEEECTTSCEEEEEEEECC-SCCSSCEEEEEECTTSCEEEEETTS------CEEEEEEETTEEEEEEEES-C
T ss_pred --eEEEEEecCCCccccceeEEeeecc-cccccceEEEEEcCCCEEEEEeCCC------EEEEEEcCCCceEEEeccc-c
Confidence 255555432 2455443210 0011112223333445666777543 4778888888886553210 0
Q ss_pred CCcc-cccEEEEEc--CCEEEEEcCCCCCCCcCceEEEECC
Q 008611 345 PSPR-SDHAAAVHA--ERYLLIFGGGSHAACFNDLHVLDLQ 382 (559)
Q Consensus 345 p~~r-~~~~~~~~~--~~~l~v~GG~~~~~~~~dv~~~d~~ 382 (559)
.... .-.++.... ++.+++.||.+ ..+.+||+.
T Consensus 292 ~h~~~~v~~v~~~~~~~~~~las~s~D-----g~v~~W~~~ 327 (330)
T 2hes_X 292 CHGVYEINVVKWLELNGKTILATGGDD-----GIVNFWSLE 327 (330)
T ss_dssp TTTTSCEEEEEEC-----CCEEEEETT-----SEEEEEEC-
T ss_pred ccccceEEEEEEecCCCceEEEEecCC-----CcEEEEEec
Confidence 1111 112222222 34577777754 246666654
No 233
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=80.25 E-value=29 Score=32.68 Aligned_cols=105 Identities=10% Similarity=0.107 Sum_probs=56.2
Q ss_pred CCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEEEECCCC
Q 008611 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETM 333 (559)
Q Consensus 255 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~ 333 (559)
++.+++.|+.++ .+..+|+.+..-...-. ..... -.++... ++.+++.|+.+ ..+.+||+.+.
T Consensus 24 ~~~~l~s~~~dg------~v~lWd~~~~~~~~~~~---~~~~~-v~~~~~~~~~~~l~s~s~d------~~i~vwd~~~~ 87 (304)
T 2ynn_A 24 TEPWVLTTLYSG------RVELWNYETQVEVRSIQ---VTETP-VRAGKFIARKNWIIVGSDD------FRIRVFNYNTG 87 (304)
T ss_dssp SSSEEEEEETTS------EEEEEETTTTEEEEEEE---CCSSC-EEEEEEEGGGTEEEEEETT------SEEEEEETTTC
T ss_pred CCCEEEEEcCCC------cEEEEECCCCceeEEee---ccCCc-EEEEEEeCCCCEEEEECCC------CEEEEEECCCC
Confidence 566777777643 58888988876433211 11111 1122222 45666777653 34788898876
Q ss_pred ceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCC
Q 008611 334 TWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTM 384 (559)
Q Consensus 334 ~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~ 384 (559)
+-...-. .....-.++++..++.+++.|+.+ ..+.+||+.+.
T Consensus 88 ~~~~~~~----~h~~~v~~~~~~~~~~~l~sgs~D-----~~v~lWd~~~~ 129 (304)
T 2ynn_A 88 EKVVDFE----AHPDYIRSIAVHPTKPYVLSGSDD-----LTVKLWNWENN 129 (304)
T ss_dssp CEEEEEE----CCSSCEEEEEECSSSSEEEEEETT-----SCEEEEEGGGT
T ss_pred cEEEEEe----CCCCcEEEEEEcCCCCEEEEECCC-----CeEEEEECCCC
Confidence 5322111 112222344454555577777754 34778887654
No 234
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=79.98 E-value=42 Score=31.90 Aligned_cols=169 Identities=8% Similarity=-0.060 Sum_probs=87.7
Q ss_pred eeEEEE--CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEE-e-CCEEEEEecc
Q 008611 189 HGAAVV--QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIP-W-ENKLLSIAGH 264 (559)
Q Consensus 189 ~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~-~~~lyv~GG~ 264 (559)
+++++. ++.|||.... ..+++||+.++..+.+.... ...+..+ -..++. - +|.||+.-..
T Consensus 83 ~gi~~~~~~g~l~v~d~~------~~i~~~d~~~g~~~~~~~~~---------~~~~~~~-p~~i~~d~~~G~l~v~d~~ 146 (322)
T 2fp8_A 83 YDISYNLQNNQLYIVDCY------YHLSVVGSEGGHATQLATSV---------DGVPFKW-LYAVTVDQRTGIVYFTDVS 146 (322)
T ss_dssp EEEEEETTTTEEEEEETT------TEEEEECTTCEECEEEESEE---------TTEECSC-EEEEEECTTTCCEEEEESC
T ss_pred ceEEEcCCCCcEEEEECC------CCEEEEeCCCCEEEEecccC---------CCCcccc-cceEEEecCCCEEEEECCc
Confidence 445555 5789988431 23889998877666553321 0001111 122333 2 5788886432
Q ss_pred CCC-----------CCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEE-C-CEEEEEcCcCCCCCCcCceEEEECC
Q 008611 265 TKD-----------PSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-G-TSLVIFGGEDAKRSLLNDLHILDLE 331 (559)
Q Consensus 265 ~~~-----------~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~-~~lyv~GG~~~~~~~~~~~~~yd~~ 331 (559)
... ......+++||+.+.+...+......| ..++.. + +.|||.-.. .+.|++|++.
T Consensus 147 ~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p-----~gia~~~dg~~lyv~d~~------~~~I~~~~~~ 215 (322)
T 2fp8_A 147 TLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVP-----GGAEVSADSSFVLVAEFL------SHQIVKYWLE 215 (322)
T ss_dssp SSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCC-----CEEEECTTSSEEEEEEGG------GTEEEEEESS
T ss_pred ccccccccceehcccCCCceEEEEeCCCCEEEEeccCCccC-----cceEECCCCCEEEEEeCC------CCeEEEEECC
Confidence 100 112367999999888766553211112 223333 3 358876432 3568999987
Q ss_pred CC---ceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCC-----CCcCceEEEECCCCeeEecc
Q 008611 332 TM---TWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHA-----ACFNDLHVLDLQTMEWSRPT 390 (559)
Q Consensus 332 t~---~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~-----~~~~dv~~~d~~~~~W~~~~ 390 (559)
+. .++.+... +. -..+++-.++.|||....... .....+.+||+....-..+.
T Consensus 216 ~~~~~~~~~~~~~---~g---P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~ 276 (322)
T 2fp8_A 216 GPKKGTAEVLVKI---PN---PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIP 276 (322)
T ss_dssp STTTTCEEEEEEC---SS---EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEE
T ss_pred CCcCCccceEEeC---CC---CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEE
Confidence 52 34433211 21 233455455668887532110 01245899998765555443
No 235
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=79.97 E-value=43 Score=32.03 Aligned_cols=112 Identities=12% Similarity=0.087 Sum_probs=62.7
Q ss_pred CCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEE-EECCEEEEEcCcCCCCCCcCceEEEECCCC
Q 008611 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVT-LVGTSLVIFGGEDAKRSLLNDLHILDLETM 333 (559)
Q Consensus 255 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~ 333 (559)
++.+|+++... ..+++||+.+++...+.. +. . -.+++ .-++.+|+... +.+++||+.+.
T Consensus 60 ~~~l~~~d~~~------~~i~~~d~~~~~~~~~~~----~~-~-v~~i~~~~dg~l~v~~~--------~gl~~~d~~~g 119 (326)
T 2ghs_A 60 SGTAWWFNILE------RELHELHLASGRKTVHAL----PF-M-GSALAKISDSKQLIASD--------DGLFLRDTATG 119 (326)
T ss_dssp TTEEEEEEGGG------TEEEEEETTTTEEEEEEC----SS-C-EEEEEEEETTEEEEEET--------TEEEEEETTTC
T ss_pred CCEEEEEECCC------CEEEEEECCCCcEEEEEC----CC-c-ceEEEEeCCCeEEEEEC--------CCEEEEECCCC
Confidence 36788876542 469999999887665532 21 1 12222 23678777541 24999999999
Q ss_pred ceEEecCCCC-CCCcccccEEEEEcCCEEEEEcCC-CCCCCcCceEEEECCCCeeEec
Q 008611 334 TWDEIDAVGV-PPSPRSDHAAAVHAERYLLIFGGG-SHAACFNDLHVLDLQTMEWSRP 389 (559)
Q Consensus 334 ~W~~~~~~~~-~p~~r~~~~~~~~~~~~l~v~GG~-~~~~~~~dv~~~d~~~~~W~~~ 389 (559)
++..+..... .+..+ -..+++..++.+|+.... ........||+|| +.+...+
T Consensus 120 ~~~~~~~~~~~~~~~~-~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~ 174 (326)
T 2ghs_A 120 VLTLHAELESDLPGNR-SNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKL 174 (326)
T ss_dssp CEEEEECSSTTCTTEE-EEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEE
T ss_pred cEEEEeeCCCCCCCCC-CCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEe
Confidence 8877643211 11111 223444445667764311 1112235789998 4555544
No 236
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=79.87 E-value=69 Score=34.30 Aligned_cols=110 Identities=9% Similarity=0.093 Sum_probs=54.6
Q ss_pred CCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEEEECCCC
Q 008611 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETM 333 (559)
Q Consensus 255 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~ 333 (559)
++.+++.|+.+. .+.++|+.+..-...-. + .. ..-.+++.. ++..++.|+.++ .+.++|....
T Consensus 441 ~g~~l~sgs~Dg------~v~vwd~~~~~~~~~~~-~--h~-~~v~~~~~s~~~~~l~s~s~D~------~i~iwd~~~~ 504 (694)
T 3dm0_A 441 DGQFALSGSWDG------ELRLWDLAAGVSTRRFV-G--HT-KDVLSVAFSLDNRQIVSASRDR------TIKLWNTLGE 504 (694)
T ss_dssp TSSEEEEEETTS------EEEEEETTTTEEEEEEE-C--CS-SCEEEEEECTTSSCEEEEETTS------CEEEECTTSC
T ss_pred CCCEEEEEeCCC------cEEEEECCCCcceeEEe-C--CC-CCEEEEEEeCCCCEEEEEeCCC------EEEEEECCCC
Confidence 677778887643 58889988875433211 1 11 111122222 456667776543 3677776544
Q ss_pred ceEEecCCCCCCCcccccEEEEEcCC--EEEEEcCCCCCCCcCceEEEECCCCee
Q 008611 334 TWDEIDAVGVPPSPRSDHAAAVHAER--YLLIFGGGSHAACFNDLHVLDLQTMEW 386 (559)
Q Consensus 334 ~W~~~~~~~~~p~~r~~~~~~~~~~~--~l~v~GG~~~~~~~~dv~~~d~~~~~W 386 (559)
.-..+...+ ......-.++....++ .+++.|+.+ ..|.+||+.+..-
T Consensus 505 ~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~s~d-----~~v~vwd~~~~~~ 553 (694)
T 3dm0_A 505 CKYTISEGG-EGHRDWVSCVRFSPNTLQPTIVSASWD-----KTVKVWNLSNCKL 553 (694)
T ss_dssp EEEEECSST-TSCSSCEEEEEECSCSSSCEEEEEETT-----SCEEEEETTTCCE
T ss_pred cceeeccCC-CCCCCcEEEEEEeCCCCcceEEEEeCC-----CeEEEEECCCCcE
Confidence 322222111 0111111223333232 356666643 3588899877654
No 237
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=79.87 E-value=3.3 Score=31.78 Aligned_cols=24 Identities=8% Similarity=0.170 Sum_probs=9.1
Q ss_pred HHHhhhHHHHHHHHHhhhhhHhhh
Q 008611 534 KLQSIQLKQDLTEAESQNTDLYKV 557 (559)
Q Consensus 534 ~~~~~~l~~~~~~~~~~~~~~~ke 557 (559)
+.+..+|+++.+.++.++++|++|
T Consensus 42 ~~r~~~Le~EN~~Lr~~v~~L~~E 65 (87)
T 1hjb_A 42 QHKVLELTAENERLQKKVEQLSRE 65 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 238
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=79.39 E-value=4.9 Score=30.40 Aligned_cols=32 Identities=16% Similarity=0.153 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhH
Q 008611 523 KEELESSLSKEKLQSIQLKQDLTEAESQNTDL 554 (559)
Q Consensus 523 ~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 554 (559)
..+.+..+...+..++.|+.+++..+.++.+.
T Consensus 36 ~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a 67 (81)
T 1ic2_A 36 SKQLEDELVALQKKLKGTEDELDKYSESLKDA 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444333
No 239
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=79.24 E-value=2.5 Score=29.17 Aligned_cols=29 Identities=24% Similarity=0.274 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLKQDL 544 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~~~~ 544 (559)
+..|+.|.++++.+.+..++++++|+.++
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666555555555555555444
No 240
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=78.82 E-value=4.3 Score=32.46 Aligned_cols=39 Identities=15% Similarity=0.205 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhh
Q 008611 515 LIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTD 553 (559)
Q Consensus 515 ~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~ 553 (559)
.+++|+.|++.+.++|+....++++|+.+.+....++..
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~ 110 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIAD 110 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhh
Confidence 477777777888888888888887777777777766643
No 241
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=78.61 E-value=51 Score=32.08 Aligned_cols=147 Identities=11% Similarity=0.024 Sum_probs=73.6
Q ss_pred CcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccC
Q 008611 211 SDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTY 290 (559)
Q Consensus 211 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~ 290 (559)
..+.++|+.+.+-...... .......+..-++++++.|+. +.+.+++..++........
T Consensus 157 ~~i~iwd~~~~~~~~~~~~--------------~~~V~~v~fspdg~~l~s~s~-------~~~~~~~~~~~~~~~~~~~ 215 (365)
T 4h5i_A 157 AIMRIIDPSDLTEKFEIET--------------RGEVKDLHFSTDGKVVAYITG-------SSLEVISTVTGSCIARKTD 215 (365)
T ss_dssp CEEEEEETTTTEEEEEEEC--------------SSCCCEEEECTTSSEEEEECS-------SCEEEEETTTCCEEEEECC
T ss_pred CEEEEeECCCCcEEEEeCC--------------CCceEEEEEccCCceEEeccc-------eeEEEEEeccCcceeeeec
Confidence 3578899988775543211 111111111125677666652 2467777777765443221
Q ss_pred CCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCC
Q 008611 291 GKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHA 370 (559)
Q Consensus 291 g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~ 370 (559)
.............-++..++.++.+... ...++.+|.....+..............-.++++..++.+++.|+.+
T Consensus 216 -~~~~~~v~~v~fspdg~~l~~~s~d~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D-- 290 (365)
T 4h5i_A 216 -FDKNWSLSKINFIADDTVLIAASLKKGK--GIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASND-- 290 (365)
T ss_dssp -CCTTEEEEEEEEEETTEEEEEEEESSSC--CEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETT--
T ss_pred -CCCCCCEEEEEEcCCCCEEEEEecCCcc--eeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCC--
Confidence 1111111111223367777777765432 22466677666555433211000111112234444567788888754
Q ss_pred CCcCceEEEECCCCee
Q 008611 371 ACFNDLHVLDLQTMEW 386 (559)
Q Consensus 371 ~~~~dv~~~d~~~~~W 386 (559)
..|.+||+.+.+-
T Consensus 291 ---~~V~iwd~~~~~~ 303 (365)
T 4h5i_A 291 ---NSIALVKLKDLSM 303 (365)
T ss_dssp ---SCEEEEETTTTEE
T ss_pred ---CEEEEEECCCCcE
Confidence 3588999987653
No 242
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=78.46 E-value=24 Score=38.07 Aligned_cols=124 Identities=16% Similarity=0.131 Sum_probs=67.8
Q ss_pred eeEEeCCEEEEEeccCCCCCCcceEEEEECCCCe--EEEeccCCCC--CC---CccceEEEEECCEEEEEcCcCCCCCCc
Q 008611 250 SLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCS--WSTLKTYGKP--PV---SRGGQSVTLVGTSLVIFGGEDAKRSLL 322 (559)
Q Consensus 250 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~g~~--p~---~r~~~~~~~~~~~lyv~GG~~~~~~~~ 322 (559)
+-++.++.||+.... ..++.+|..+++ |+.-...... +. .....+.++.+++||+... -
T Consensus 61 ~P~v~~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-------d 126 (668)
T 1kv9_A 61 TPLFHDGVIYTSMSW-------SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL-------D 126 (668)
T ss_dssp CCEEETTEEEEEEGG-------GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT-------T
T ss_pred CCEEECCEEEEECCC-------CeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC-------C
Confidence 335679999997652 468999988775 8864321000 00 0011234556788887542 2
Q ss_pred CceEEEECCCC--ceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCC--eeEec
Q 008611 323 NDLHILDLETM--TWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTM--EWSRP 389 (559)
Q Consensus 323 ~~~~~yd~~t~--~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~--~W~~~ 389 (559)
..++.+|..|. .|+.-.... ........+.++. ++.||+..+......-..++.||..+. .|+.-
T Consensus 127 g~l~alD~~tG~~~W~~~~~~~-~~~~~~~~~P~v~-~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 127 GRLIALDAKTGKAIWSQQTTDP-AKPYSITGAPRVV-KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp SEEEEEETTTCCEEEEEECSCT-TSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CEEEEEECCCCCEeeeeccCCC-CCcceecCCCEEE-CCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence 45899998876 487653210 1111122233333 665655322211122356999999876 48763
No 243
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Probab=78.36 E-value=56 Score=33.34 Aligned_cols=157 Identities=11% Similarity=0.017 Sum_probs=79.7
Q ss_pred eEEEECCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEE--eCCEEEEEeccCCC
Q 008611 190 GAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIP--WENKLLSIAGHTKD 267 (559)
Q Consensus 190 ~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~ 267 (559)
+++.+.+++|+|-| .-+|+++.....+......... +..|. ... ++.. .++++|+|=|.
T Consensus 267 Ai~~~~ge~y~Fkg-------~~~wr~~~~~~~~~p~~I~~~W-------p~LP~-~iD-Aa~~~~~~g~~~fFKg~--- 327 (450)
T 1su3_A 267 AITTIRGEVMFFKD-------RFYMRTNPFYPEVELNFISVFW-------PQLPN-GLE-AAYEFADRDEVRFFKGN--- 327 (450)
T ss_dssp EEEEETTEEEEEET-------TEEEECCTTSSSCEEEEGGGTC-------TTSCS-SCC-EEEEEGGGTEEEEEETT---
T ss_pred eEEecCCeEEEEeC-------CEEEEEcCCCCcccceehhHhc-------cCCCC-Cee-EEEEEcCCCeEEEEeCC---
Confidence 45567999999987 4577777655444322221100 11121 122 2222 26899999764
Q ss_pred CCCcceEEEEECCCC---eEEEec-cCCCCCCCccce-EEEEE--CCEEEEEcCcCCCCCCcCceEEEECCCCceE----
Q 008611 268 PSEIIQVKVFDLQTC---SWSTLK-TYGKPPVSRGGQ-SVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWD---- 336 (559)
Q Consensus 268 ~~~~~~v~~yd~~t~---~W~~~~-~~g~~p~~r~~~-~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~---- 336 (559)
.+|+|+..+. -=..+. ..| .|..-... ++... ++++|+|=| +..|+||..+.+-.
T Consensus 328 -----~~W~~~~~~~~~gyP~~i~~~~g-~P~~~~~IDAA~~~~~~~k~yfFkG--------~~yw~yd~~~~~~~~gYP 393 (450)
T 1su3_A 328 -----KYWAVQGQNVLHGYPKDIYSSFG-FPRTVKHIDAALSEENTGKTYFFVA--------NKYWRYDEYKRSMDPGYP 393 (450)
T ss_dssp -----EEEEEETTEECTTCSEEHHHHHC-CCTTCCCCCEEEEETTTTEEEEEET--------TEEEEEETTTTEECSSCS
T ss_pred -----EEEEecCCcccCCCceeeehhhc-CCCCCCccceEEEEcCCCeEEEEeC--------CEEEEEeCCCccccCCCC
Confidence 4777764321 001121 111 22211111 22233 579999976 35899997654321
Q ss_pred -EecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEe
Q 008611 337 -EIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSR 388 (559)
Q Consensus 337 -~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~ 388 (559)
.+.. +-+..+..-.++. ..++++|+|-|. ..|+||..+.+-..
T Consensus 394 k~I~~-~fpgip~~iDAA~-~~~g~~YFFkg~-------~ywr~d~~~~~v~~ 437 (450)
T 1su3_A 394 KMIAH-DFPGIGHKVDAVF-MKDGFFYFFHGT-------RQYKFDPKTKRILT 437 (450)
T ss_dssp EEHHH-HSTTSCSCCSEEE-EETTEEEEEETT-------EEEEEETTTTEEEE
T ss_pred cchhh-cCCCCCCCccEEE-EcCCeEEEEeCC-------EEEEEECCcceEec
Confidence 1110 0001111122333 346789999874 48999988776543
No 244
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=78.32 E-value=2.8 Score=30.95 Aligned_cols=49 Identities=14% Similarity=0.216 Sum_probs=31.4
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHH-----HHHHHHHhhhHHHHHHHHHhhhhhH
Q 008611 506 SKHPETTEHLIATLKAEKEELESS-----LSKEKLQSIQLKQDLTEAESQNTDL 554 (559)
Q Consensus 506 ~~~~~~~~~~~~~l~~e~~~~~~~-----l~~~~~~~~~l~~~~~~~~~~~~~~ 554 (559)
++.++++|..++.|.+|+++...+ +...++++.|-..++.++..+++-+
T Consensus 28 rq~I~DKQ~~i~~Lt~eLq~A~~eaNpaeIA~~~~~L~qAraDL~~l~r~~av~ 81 (90)
T 4b6x_A 28 RQEIEDKQLMVNNLTDELQDAIDEANPAEIANTSQQLRHARADLADLQRRFAVL 81 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344577788899999998887643 4444555555556666666655433
No 245
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=77.63 E-value=6.8 Score=28.61 Aligned_cols=43 Identities=30% Similarity=0.327 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhh
Q 008611 515 LIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKV 557 (559)
Q Consensus 515 ~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ke 557 (559)
.+..+..|++++-.++...+++..+++.+-.+.....+.+++.
T Consensus 5 ~v~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~k~~lek~ 47 (71)
T 1uix_A 5 DVANLANEKEELNNKLKEAQEQLSRLKDEEISAAAIKAQFEKQ 47 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777777777777776654333332333344443
No 246
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=77.56 E-value=3.6 Score=32.64 Aligned_cols=26 Identities=15% Similarity=-0.026 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhH
Q 008611 515 LIATLKAEKEELESSLSKEKLQSIQL 540 (559)
Q Consensus 515 ~~~~l~~e~~~~~~~l~~~~~~~~~l 540 (559)
.+.+|++.++.++..+...+.++...
T Consensus 45 Ei~sL~kk~~~lE~eld~~ee~L~ea 70 (101)
T 3u1c_A 45 DIVQLEKQLRVTEDSRDQVLEELHKS 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433333
No 247
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=77.07 E-value=88 Score=33.98 Aligned_cols=107 Identities=12% Similarity=0.091 Sum_probs=60.5
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCCCCCcceE
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQV 274 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v 274 (559)
++.|||-.. +-+++||+.+.++... .. ..+. .-.+++..++.|+|... +.+
T Consensus 73 ~g~lWigT~-------~Gl~~yd~~~~~f~~~--~~----------~~~~--~i~~i~~~~g~lWigt~--------~Gl 123 (758)
T 3ott_A 73 NTYLYMGTD-------NGILVYNYRADRYEQP--ET----------DFPT--DVRTMALQGDTLWLGAL--------NGL 123 (758)
T ss_dssp TTEEEEEET-------TEEEEEETTTTEECCC--SC----------CCCS--CEEEEEEETTEEEEEET--------TEE
T ss_pred CCcEEEEeC-------CCeEEEeCCCCEEECc--cc----------CCCc--eEEEEEecCCcEEEEcC--------Ccc
Confidence 567887542 3588999999877541 10 0111 11123334778887421 258
Q ss_pred EEEECCCCeEEEeccC-CCCCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEEEECCCCceEEec
Q 008611 275 KVFDLQTCSWSTLKTY-GKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEID 339 (559)
Q Consensus 275 ~~yd~~t~~W~~~~~~-g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~ 339 (559)
++||+.+.++..+... ..++... -.+++.. ++.|+|.. .+.+++||+.+.++....
T Consensus 124 ~~~~~~~~~~~~~~~~~~~l~~~~-i~~i~~d~~g~lWigt--------~~Gl~~~~~~~~~~~~~~ 181 (758)
T 3ott_A 124 YTYQLQSRKLTSFDTRRNGLPNNT-IYSIIRTKDNQIYVGT--------YNGLCRYIPSNGKFEGIP 181 (758)
T ss_dssp EEEETTTCCEEEECHHHHCCSCSC-EEEEEECTTCCEEEEE--------TTEEEEEETTTTEEEEEC
T ss_pred eeEeCCCCeEEEeccCCCCcCCCe-EEEEEEcCCCCEEEEe--------CCCHhhCccCCCceEEec
Confidence 8999999988877211 1122211 1222222 56788732 134889999888887654
No 248
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=76.97 E-value=62 Score=32.28 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=15.0
Q ss_pred cccEEEEEcCCEEEEEcCC
Q 008611 349 SDHAAAVHAERYLLIFGGG 367 (559)
Q Consensus 349 ~~~~~~~~~~~~l~v~GG~ 367 (559)
..|++++..++.||.+|-.
T Consensus 286 ~~hs~alt~~G~v~~wG~n 304 (406)
T 4d9s_A 286 WRHTMALTSDGKLYGWGWN 304 (406)
T ss_dssp SSEEEEEETTSCEEEEECC
T ss_pred CCEEEEEcCCCeEEEeeCC
Confidence 4588888888889999853
No 249
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=76.91 E-value=6.1 Score=29.88 Aligned_cols=41 Identities=17% Similarity=0.105 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhh
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYK 556 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~k 556 (559)
...+..++..++.+++..+.++.+.+.++.+++..|++.++
T Consensus 36 ~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek 76 (81)
T 1ic2_A 36 SKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADK 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555555555555555555544443
No 250
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=76.91 E-value=5.1 Score=28.68 Aligned_cols=28 Identities=14% Similarity=0.111 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 008611 524 EELESSLSKEKLQSIQLKQDLTEAESQN 551 (559)
Q Consensus 524 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 551 (559)
+.++.+.++.+.++.+|+.+++.++.++
T Consensus 26 ~~le~~~~~L~~~N~~L~~~i~~L~~E~ 53 (63)
T 1ci6_A 26 EALTGECKELEKKNEALKERADSLAKEI 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444444433333
No 251
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=76.89 E-value=85 Score=33.74 Aligned_cols=103 Identities=15% Similarity=0.092 Sum_probs=61.0
Q ss_pred cceEEEEECCCC--eEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCC---ceEEecCCCCCC
Q 008611 271 IIQVKVFDLQTC--SWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETM---TWDEIDAVGVPP 345 (559)
Q Consensus 271 ~~~v~~yd~~t~--~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~---~W~~~~~~~~~p 345 (559)
.+.++.+|+.+. .|..+.. +...........++.||+....+.. ...|+.+|+.+. .|+.+.+.. .
T Consensus 258 ~~~i~~~d~~~~~~~~~~l~~----~~~~~~~~~~~~g~~l~~~t~~~~~---~~~l~~~d~~~~~~~~~~~l~~~~--~ 328 (693)
T 3iuj_A 258 GNRLYVKDLSQENAPLLTVQG----DLDADVSLVDNKGSTLYLLTNRDAP---NRRLVTVDAANPGPAHWRDLIPER--Q 328 (693)
T ss_dssp CCEEEEEETTSTTCCCEEEEC----SSSSCEEEEEEETTEEEEEECTTCT---TCEEEEEETTSCCGGGCEEEECCC--S
T ss_pred CcEEEEEECCCCCCceEEEeC----CCCceEEEEeccCCEEEEEECCCCC---CCEEEEEeCCCCCccccEEEecCC--C
Confidence 368999998776 7888752 1111222234457899988765432 357999998763 488775431 1
Q ss_pred CcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEec
Q 008611 346 SPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRP 389 (559)
Q Consensus 346 ~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~ 389 (559)
. .. .... .+++|++..-.+ ....|+++|+.......+
T Consensus 329 ~--~~-~~s~-~g~~lv~~~~~~---g~~~l~~~d~~g~~~~~l 365 (693)
T 3iuj_A 329 Q--VL-TVHS-GSGYLFAEYMVD---ATARVEQFDYEGKRVREV 365 (693)
T ss_dssp S--CE-EEEE-ETTEEEEEEEET---TEEEEEEECTTSCEEEEE
T ss_pred C--EE-EEEE-ECCEEEEEEEEC---CeeEEEEEECCCCeeEEe
Confidence 1 11 3333 356555543221 134689999887766655
No 252
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=76.43 E-value=57 Score=33.95 Aligned_cols=110 Identities=8% Similarity=0.018 Sum_probs=62.0
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCCCCCcceE
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQV 274 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v 274 (559)
++.+++..+.. +.+.+||+.+++-..+.... . ......-+|+.+++++.... ....+
T Consensus 121 g~~~~~~s~~~-----~~~~l~d~~~g~~~~l~~~~-------------~---~~~~~spDG~~la~~~~~~~--~~~~i 177 (582)
T 3o4h_A 121 GEAVVFTGATE-----DRVALYALDGGGLRELARLP-------------G---FGFVSDIRGDLIAGLGFFGG--GRVSL 177 (582)
T ss_dssp SSCEEEEEECS-----SCEEEEEEETTEEEEEEEES-------------S---CEEEEEEETTEEEEEEEEET--TEEEE
T ss_pred CCeEEEEecCC-----CCceEEEccCCcEEEeecCC-------------C---ceEEECCCCCEEEEEEEcCC--CCeEE
Confidence 45566655432 23447799998877765421 1 22223336666666654322 23469
Q ss_pred EEEECCCCeEEEeccCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEEEECCCCceE
Q 008611 275 KVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWD 336 (559)
Q Consensus 275 ~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~ 336 (559)
+.+|+.++++..+... + ... ...+.. +++.++.+..++ ...|+++|+.+....
T Consensus 178 ~~~d~~~g~~~~l~~~---~-~~~-~~~~~SpDG~~l~~~~~~~----~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 178 FTSNLSSGGLRVFDSG---E-GSF-SSASISPGMKVTAGLETAR----EARLVTVDPRDGSVE 231 (582)
T ss_dssp EEEETTTCCCEEECCS---S-CEE-EEEEECTTSCEEEEEECSS----CEEEEEECTTTCCEE
T ss_pred EEEcCCCCCceEeecC---C-Ccc-ccceECCCCCEEEEccCCC----eeEEEEEcCCCCcEE
Confidence 9999999998877421 1 111 222222 454444333222 246999999998887
No 253
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=76.19 E-value=55 Score=31.16 Aligned_cols=160 Identities=9% Similarity=0.134 Sum_probs=75.8
Q ss_pred EEEECCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe--CCEEEEEeccCCCC
Q 008611 191 AAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHTKDP 268 (559)
Q Consensus 191 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~ 268 (559)
+...++ +++.||.+ ..+.+||+.++.+..+.... . ......-.++.+ ++.+++.|+.+.
T Consensus 20 ~~~s~~-~las~~~D-----~~i~lw~~~~~~~~~~~~~~----------~-~~h~~~v~~v~~sp~~~~las~s~D~-- 80 (330)
T 2hes_X 20 FDFSQG-ILATGSTD-----RKIKLVSVKYDDFTLIDVLD----------E-TAHKKAIRSVAWRPHTSLLAAGSFDS-- 80 (330)
T ss_dssp EEEETT-EEEEEESS-----SCEEEEECSSSCCEEEEEEC----------T-TCCCSCEEEEEECTTSSEEEEEETTS--
T ss_pred eccCCC-EEEEEcCC-----CEEEEEEecCCCeEEEEEEe----------c-CCccCCEEEEEECCCCCEEEEEeCCC--
Confidence 333455 66667643 35788888876555443321 0 001111122333 567778887654
Q ss_pred CCcceEEEEECCCC-----eEEEeccCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCcCceEEEECCC--CceEEec
Q 008611 269 SEIIQVKVFDLQTC-----SWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLET--MTWDEID 339 (559)
Q Consensus 269 ~~~~~v~~yd~~t~-----~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t--~~W~~~~ 339 (559)
.+.++|+... .+..+... ..-......+.+ ++.+++.|+.++ .+.+||+.. ..+..+.
T Consensus 81 ----~v~iw~~~~~~~~~~~~~~~~~~---~~h~~~V~~v~~sp~g~~las~s~D~------~v~iwd~~~~~~~~~~~~ 147 (330)
T 2hes_X 81 ----TVSIWAKEESADRTFEMDLLAII---EGHENEVKGVAWSNDGYYLATCSRDK------SVWIWETDESGEEYECIS 147 (330)
T ss_dssp ----CEEEEEC-------CCCEEEEEE---C----CEEEEEECTTSCEEEEEETTS------CEEEEECCTTCCCCEEEE
T ss_pred ----cEEEEEcccCcCccccceeEEEE---cCCCCcEEEEEECCCCCEEEEEeCCC------EEEEEeccCCCCCeEEEE
Confidence 3667776432 22222110 000111112222 456777777543 477888742 3444433
Q ss_pred CCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEec
Q 008611 340 AVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRP 389 (559)
Q Consensus 340 ~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~ 389 (559)
... .....-.++....++.+++.|+.+ ..+.+||..+..|..+
T Consensus 148 ~~~--~h~~~v~~v~~~p~~~~l~s~s~D-----~~i~iW~~~~~~~~~~ 190 (330)
T 2hes_X 148 VLQ--EHSQDVKHVIWHPSEALLASSSYD-----DTVRIWKDYDDDWECV 190 (330)
T ss_dssp EEC--CCSSCEEEEEECSSSSEEEEEETT-----SCEEEEEEETTEEEEE
T ss_pred Eec--cCCCceEEEEECCCCCEEEEEcCC-----CeEEEEECCCCCeeEE
Confidence 221 111112233333455577777754 3477788777766554
No 254
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=76.00 E-value=49 Score=30.52 Aligned_cols=106 Identities=8% Similarity=0.028 Sum_probs=53.7
Q ss_pred CCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEE-ECCEEEEEcCcCCCCCCcCceEEEECCCC
Q 008611 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTL-VGTSLVIFGGEDAKRSLLNDLHILDLETM 333 (559)
Q Consensus 255 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd~~t~ 333 (559)
++.+++.|+.+. .+..||..... ..+. .+....-.+++. -++. ++.|+.+ ..+.+||+.+.
T Consensus 154 ~~~~l~~~~~d~------~i~i~d~~~~~-~~~~----~~~~~~i~~~~~~~~~~-~~~~~~d------g~i~i~d~~~~ 215 (313)
T 3odt_A 154 SENKFLTASADK------TIKLWQNDKVI-KTFS----GIHNDVVRHLAVVDDGH-FISCSND------GLIKLVDMHTG 215 (313)
T ss_dssp TTTEEEEEETTS------CEEEEETTEEE-EEEC----SSCSSCEEEEEEEETTE-EEEEETT------SEEEEEETTTC
T ss_pred CCCEEEEEECCC------CEEEEecCceE-EEEe----ccCcccEEEEEEcCCCe-EEEccCC------CeEEEEECCch
Confidence 566777777643 47778833221 2221 111111222222 3556 6666643 35889998876
Q ss_pred ceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEe
Q 008611 334 TWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSR 388 (559)
Q Consensus 334 ~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~ 388 (559)
+-...-.. ....-.+++...++ .++.|+.+ ..+.+||+.+.+...
T Consensus 216 ~~~~~~~~----~~~~i~~~~~~~~~-~l~~~~~d-----g~v~iwd~~~~~~~~ 260 (313)
T 3odt_A 216 DVLRTYEG----HESFVYCIKLLPNG-DIVSCGED-----RTVRIWSKENGSLKQ 260 (313)
T ss_dssp CEEEEEEC----CSSCEEEEEECTTS-CEEEEETT-----SEEEEECTTTCCEEE
T ss_pred hhhhhhhc----CCceEEEEEEecCC-CEEEEecC-----CEEEEEECCCCceeE
Confidence 53322111 11122344444455 45566543 458899988775443
No 255
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=75.74 E-value=59 Score=31.33 Aligned_cols=64 Identities=11% Similarity=0.017 Sum_probs=36.1
Q ss_pred cCceEEEECCCCceEEecCCCCCCCcccccEEEEEc-CCE-EEEEcCCCCCCCcCceEEEECCCCeeEecc
Q 008611 322 LNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHA-ERY-LLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (559)
Q Consensus 322 ~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~-~~~-l~v~GG~~~~~~~~dv~~~d~~~~~W~~~~ 390 (559)
...++.+|+.+.....+... ........... ++. |++............||++|+.+..+..+.
T Consensus 167 ~~~l~~~d~~~g~~~~~~~~-----~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~ 232 (396)
T 3c5m_A 167 TCRLIKVDIETGELEVIHQD-----TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIK 232 (396)
T ss_dssp CEEEEEEETTTCCEEEEEEE-----SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESS
T ss_pred cceEEEEECCCCcEEeeccC-----CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEee
Confidence 35789999998887766421 12222333333 333 444432111112257999999888777663
No 256
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=75.59 E-value=2.2 Score=33.48 Aligned_cols=45 Identities=18% Similarity=0.165 Sum_probs=23.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhH
Q 008611 510 ETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDL 554 (559)
Q Consensus 510 ~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 554 (559)
++.++...+++++.++..+.++........|+.+++.++.+|.+.
T Consensus 40 Ee~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qR 84 (103)
T 4h22_A 40 LELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQR 84 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555555555555555555555555443
No 257
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*
Probab=75.30 E-value=77 Score=32.42 Aligned_cols=59 Identities=14% Similarity=0.039 Sum_probs=38.0
Q ss_pred CCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCC
Q 008611 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETM 333 (559)
Q Consensus 255 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~ 333 (559)
++.+|+|-|. ..|+||..+.....-.-. .+| .. -++....+++|+|-|. ..|+||..+.
T Consensus 158 ~~~~yfFkG~--------~yw~yd~~~~~~~~~~w~-gi~--~i-DAA~~~~g~~YfFkG~--------~y~rfd~~~~ 216 (460)
T 1qhu_A 158 DEGILFFQGN--------RKWFWDLTTGTKKERSWP-AVG--NC-TSALRWLGRYYCFQGN--------QFLRFNPVSG 216 (460)
T ss_dssp SSEEEEEETT--------EEEEEETTTTEEEEECCT-TSC--CC-SEEEEETTEEEEEETT--------EEEEECTTTC
T ss_pred CCeEEEEecc--------cEEEEecccceeecccCC-CCC--cc-chheeeCCceEEEECC--------EEEEEcCccC
Confidence 6788998873 589999998876543211 122 22 3444457899999873 4667776543
No 258
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=75.22 E-value=4.6 Score=32.07 Aligned_cols=18 Identities=28% Similarity=0.386 Sum_probs=8.1
Q ss_pred HHHHHHHhhhhhHhhhhC
Q 008611 542 QDLTEAESQNTDLYKVIA 559 (559)
Q Consensus 542 ~~~~~~~~~~~~~~kelq 559 (559)
....+++...+.|.|.||
T Consensus 79 k~~~~AE~evasLnRriq 96 (101)
T 3u59_A 79 KKATDAEAEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444455555443
No 259
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=75.09 E-value=6.5 Score=31.22 Aligned_cols=27 Identities=11% Similarity=0.054 Sum_probs=15.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHH
Q 008611 510 ETTEHLIATLKAEKEELESSLSKEKLQ 536 (559)
Q Consensus 510 ~~~~~~~~~l~~e~~~~~~~l~~~~~~ 536 (559)
+++|..+...+.+|....++|+.++++
T Consensus 25 eeLq~Ei~~~E~QL~~ArQKLkdA~~~ 51 (113)
T 4fi5_A 25 EELQREINAHEGQLVIARQKVRDAEKQ 51 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555556665555555555444
No 260
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=75.07 E-value=6 Score=29.75 Aligned_cols=44 Identities=23% Similarity=0.218 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhh
Q 008611 514 HLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKV 557 (559)
Q Consensus 514 ~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ke 557 (559)
++|+-|+-++++++++.....++.++++...+.+.++++.|..|
T Consensus 20 dtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E 63 (81)
T 2jee_A 20 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQ 63 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34566666666666666666666666444444455555444443
No 261
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=75.01 E-value=3.5 Score=32.17 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHh
Q 008611 522 EKEELESSLSKEKLQSIQLKQDLTEAESQNTDLY 555 (559)
Q Consensus 522 e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 555 (559)
++..+...+.+++..-.+.+.+....++.+++|+
T Consensus 27 e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLT 60 (97)
T 2eqb_B 27 EVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333334444444443333
No 262
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=74.94 E-value=7.9 Score=30.75 Aligned_cols=22 Identities=14% Similarity=0.055 Sum_probs=11.1
Q ss_pred hhhHHHHHHHHHhhhhhHhhhh
Q 008611 537 SIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 537 ~~~l~~~~~~~~~~~~~~~kel 558 (559)
-+++..+.++++.+++.|.+++
T Consensus 85 REkl~~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 85 REKLVEKKEYLQEQLEQLQREF 106 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHH
Confidence 3344455555555555555543
No 263
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=74.84 E-value=68 Score=31.62 Aligned_cols=108 Identities=15% Similarity=0.158 Sum_probs=57.5
Q ss_pred CCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCcCceEEEECCC
Q 008611 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLET 332 (559)
Q Consensus 255 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t 332 (559)
++.+++.|+.++ .+..||+.+.+-...-. .+.......++.+ ++.+++.|+.++ .+.+||+.+
T Consensus 181 ~~~~l~~~~~d~------~i~iwd~~~~~~~~~~~---~~~h~~~v~~~~~s~~~~~l~s~~~dg------~i~iwd~~~ 245 (437)
T 3gre_A 181 EKSLLVALTNLS------RVIIFDIRTLERLQIIE---NSPRHGAVSSICIDEECCVLILGTTRG------IIDIWDIRF 245 (437)
T ss_dssp SCEEEEEEETTS------EEEEEETTTCCEEEEEE---CCGGGCCEEEEEECTTSCEEEEEETTS------CEEEEETTT
T ss_pred CCCEEEEEeCCC------eEEEEeCCCCeeeEEEc---cCCCCCceEEEEECCCCCEEEEEcCCC------eEEEEEcCC
Confidence 477778777643 58999998876433221 1111122223333 557777777643 488999987
Q ss_pred CceEEecCCCCCCCcccccEEEEE----cCCEEEEEcCCCCCCCcCceEEEECCCCe
Q 008611 333 MTWDEIDAVGVPPSPRSDHAAAVH----AERYLLIFGGGSHAACFNDLHVLDLQTME 385 (559)
Q Consensus 333 ~~W~~~~~~~~~p~~r~~~~~~~~----~~~~l~v~GG~~~~~~~~dv~~~d~~~~~ 385 (559)
......-.. +....-.+++.. .++.+++.|+.+ ..+.+||+.+..
T Consensus 246 ~~~~~~~~~---~~~~~v~~~~~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~~~ 294 (437)
T 3gre_A 246 NVLIRSWSF---GDHAPITHVEVCQFYGKNSVIVVGGSSK-----TFLTIWNFVKGH 294 (437)
T ss_dssp TEEEEEEBC---TTCEEEEEEEECTTTCTTEEEEEEESTT-----EEEEEEETTTTE
T ss_pred ccEEEEEec---CCCCceEEEEeccccCCCccEEEEEcCC-----CcEEEEEcCCCc
Confidence 655332111 111111122111 234466666543 358899988765
No 264
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Probab=74.72 E-value=69 Score=31.62 Aligned_cols=158 Identities=11% Similarity=0.062 Sum_probs=80.2
Q ss_pred eEEEECCEEEEEccCCCCcccCcEEEEEcCCCeE--EEeeeccccCCCCCCCCCCCCCCccceeEE-eCCEEEEEeccCC
Q 008611 190 GAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAW--SKIQAKAVAESTESPSPALLTPCAGHSLIP-WENKLLSIAGHTK 266 (559)
Q Consensus 190 ~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W--~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~ 266 (559)
+++.+.+++|+|=| +-+|+++.....- ..+...- +..| .....+... .++++|+|-|.
T Consensus 185 Av~~~~g~~~fFkg-------~~~Wr~~~~~~~~~p~~I~~~w---------pgLP-~~iDAa~~~~~~g~~~fFkg~-- 245 (365)
T 3ba0_A 185 AVTTVGNKIFFFKD-------RFFWLKVSERPKTSVNLISSLW---------PTLP-SGIEAAYEIEARNQVFLFKDD-- 245 (365)
T ss_dssp CEEEETTEEEEEET-------TEEEECCSSCCCCCEEEHHHHC---------SSCC-SSCCEEEEEGGGTEEEEEETT--
T ss_pred eEEEcCCeEEEEeC-------CEEEEEcCCCccCCccchhhhc---------cCCC-CCccEEEEecCCCEEEEEeCC--
Confidence 34557999999977 4567776543221 1111100 1122 222222222 27899999773
Q ss_pred CCCCcceEEEEECCCCe--E-EEeccCCCCCCCc-cceEEEEE--CCEEEEEcCcCCCCCCcCceEEEECCCCceEEecC
Q 008611 267 DPSEIIQVKVFDLQTCS--W-STLKTYGKPPVSR-GGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDA 340 (559)
Q Consensus 267 ~~~~~~~v~~yd~~t~~--W-~~~~~~g~~p~~r-~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~ 340 (559)
..|+|+..... + ..++..| +|..- .--++... ++++|+|=| +..|+||..+.+-..--+
T Consensus 246 ------~yWr~~~~~~~~gyPk~I~~~G-lP~~~~~IDAA~~~~~~~~~yfFkG--------~~yw~yd~~~~~v~~gyP 310 (365)
T 3ba0_A 246 ------KYWLISNLRPEPNYPKSIHSFG-FPNFVKKIDAAVFNPRFYRTYFFVD--------NQYWRYDERRQMMDPGYP 310 (365)
T ss_dssp ------EEEECSTTSCTTTCSEETTTTT-CCTTCCCCCEEEEETTTTEEEEEET--------TEEEEEETTTTEECSSCC
T ss_pred ------EEEEEcCCcccCCCCceeeecc-CCCCCCCcCEEEEeCCCCEEEEEEC--------CEEEEEeCCcceecCCCC
Confidence 46777643211 1 1232212 33311 11223333 469999976 358999976653221000
Q ss_pred C----CCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEe
Q 008611 341 V----GVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSR 388 (559)
Q Consensus 341 ~----~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~ 388 (559)
. +-+..+..-.++....++.+|+|=|. ..|+||..+.+-..
T Consensus 311 k~I~~~f~g~p~~iDaA~~~~~g~~YfFkg~-------~ywr~d~~~~~v~~ 355 (365)
T 3ba0_A 311 KLITKNFQGIGPKIDAVFYSKNKYYYFFQGS-------NQFEYDFLLQRITK 355 (365)
T ss_dssp CCHHHHSTTCCSSCSEEEEETTTEEEEEETT-------EEEEEETTTTEEEE
T ss_pred cchhhcCCCCCCccceeeEecCCcEEEEeCC-------EEEEEECCccEEec
Confidence 0 00112222334444446779999773 48999998876554
No 265
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=74.57 E-value=83 Score=32.47 Aligned_cols=106 Identities=12% Similarity=0.110 Sum_probs=59.0
Q ss_pred CCEEEEEecc-CCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCcCceEEEECC
Q 008611 255 ENKLLSIAGH-TKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLE 331 (559)
Q Consensus 255 ~~~lyv~GG~-~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~ 331 (559)
.+.+++.|+. +. .+..||+.+....... ............+ ++.+++.|+.+ ..+.+||+.
T Consensus 455 ~~~~l~~~~~~d~------~i~~~~~~~~~~~~~~----~~~~~~~v~~~~~s~~g~~l~~~~~d------g~i~iw~~~ 518 (615)
T 1pgu_A 455 SQNYVAVGLEEGN------TIQVFKLSDLEVSFDL----KTPLRAKPSYISISPSETYIAAGDVM------GKILLYDLQ 518 (615)
T ss_dssp CSSEEEEEETTTS------CEEEEETTEEEEEEEC----SSCCSSCEEEEEECTTSSEEEEEETT------SCEEEEETT
T ss_pred cCCEEEEeecCCC------eEEEEECCCccccccc----cCCccCceEEEEECCCCCEEEEcCCC------CeEEEeeCC
Confidence 3666677765 33 5889999887664311 1111222223333 56777777754 348899987
Q ss_pred CCceEEecCCCCCCCcccccEEEEEc----------CCEEEEEcCCCCCCCcCceEEEECCCC
Q 008611 332 TMTWDEIDAVGVPPSPRSDHAAAVHA----------ERYLLIFGGGSHAACFNDLHVLDLQTM 384 (559)
Q Consensus 332 t~~W~~~~~~~~~p~~r~~~~~~~~~----------~~~l~v~GG~~~~~~~~dv~~~d~~~~ 384 (559)
+..-... .. ......-.+++... ++.+++.|+.+ ..+.+||+.+.
T Consensus 519 ~~~~~~~--~~-~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~d-----g~i~iw~~~~~ 573 (615)
T 1pgu_A 519 SREVKTS--RW-AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLD-----TNIFIYSVKRP 573 (615)
T ss_dssp TTEEEEC--CS-CCCSSCEEEEEECCCC------CCSCCEEEEEETT-----SCEEEEESSCT
T ss_pred CCcceeE--ee-cCCCCceeEEEEcCccccccccccCCCEEEEEcCC-----CcEEEEECCCC
Confidence 7644322 10 00222223344444 55677777654 35889998775
No 266
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=74.09 E-value=8.6 Score=26.62 Aligned_cols=38 Identities=18% Similarity=0.189 Sum_probs=26.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 008611 511 TTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAE 548 (559)
Q Consensus 511 ~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~ 548 (559)
-.+..|++|.+-...+.+.|...|.++++|+.+...+.
T Consensus 24 aSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 24 TSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 34455777777777777777777777777776665544
No 267
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=74.08 E-value=4.3 Score=27.94 Aligned_cols=30 Identities=17% Similarity=0.109 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 008611 522 EKEELESSLSKEKLQSIQLKQDLTEAESQN 551 (559)
Q Consensus 522 e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 551 (559)
+.+.++..+++.+.++..|+++++++..++
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444
No 268
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=73.96 E-value=8.7 Score=27.20 Aligned_cols=32 Identities=19% Similarity=0.156 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHh
Q 008611 524 EELESSLSKEKLQSIQLKQDLTEAESQNTDLY 555 (559)
Q Consensus 524 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 555 (559)
++++.+......++..|+.++..++.++..|.
T Consensus 25 ~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 25 QSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444443
No 269
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=73.90 E-value=8.9 Score=27.15 Aligned_cols=39 Identities=13% Similarity=0.198 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 008611 513 EHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQN 551 (559)
Q Consensus 513 ~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 551 (559)
.+.+.+|+.+.+.++......+.++..|+.++..+.+.+
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667777777777777777777777777777666543
No 270
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=73.77 E-value=54 Score=30.97 Aligned_cols=68 Identities=10% Similarity=0.214 Sum_probs=37.6
Q ss_pred CEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe--C--CEEEEEeccCCCCCCc
Q 008611 196 DKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--E--NKLLSIAGHTKDPSEI 271 (559)
Q Consensus 196 ~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~--~~lyv~GG~~~~~~~~ 271 (559)
+.+++.|+.+ ..+.++|+.+..|..+.... .....-.++.+ + +.+++.|+.+.
T Consensus 71 ~~~l~s~s~D-----~~v~iWd~~~~~~~~~~~~~-------------~h~~~V~~v~~~p~~~g~~lasgs~D~----- 127 (316)
T 3bg1_A 71 GNILASCSYD-----RKVIIWREENGTWEKSHEHA-------------GHDSSVNSVCWAPHDYGLILACGSSDG----- 127 (316)
T ss_dssp SSCEEEEETT-----SCEEEECCSSSCCCEEEEEC-------------CCSSCCCEEEECCTTTCSCEEEECSSS-----
T ss_pred CCEEEEEECC-----CEEEEEECCCCcceEEEEcc-------------CCCCceEEEEECCCCCCcEEEEEcCCC-----
Confidence 4667777643 35788888887776554321 00111112222 2 56777777643
Q ss_pred ceEEEEECCCC-eEEEe
Q 008611 272 IQVKVFDLQTC-SWSTL 287 (559)
Q Consensus 272 ~~v~~yd~~t~-~W~~~ 287 (559)
.+..+|..+. .|...
T Consensus 128 -~i~lwd~~~~~~~~~~ 143 (316)
T 3bg1_A 128 -AISLLTYTGEGQWEVK 143 (316)
T ss_dssp -CEEEEEECSSSCEEEC
T ss_pred -CEEEEecCCCCCccee
Confidence 3677777665 46543
No 271
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=73.77 E-value=64 Score=30.77 Aligned_cols=106 Identities=10% Similarity=0.076 Sum_probs=59.0
Q ss_pred CCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEEEECCCC
Q 008611 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETM 333 (559)
Q Consensus 255 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~ 333 (559)
++.+++.|+.++ .+..||+.+.+-..+.. ......-.+++.. ++.+++.|+.++ .+.+||+.+.
T Consensus 138 ~~~~l~s~s~dg------~i~~wd~~~~~~~~~~~---~~~~~~i~~~~~~pdg~~lasg~~dg------~i~iwd~~~~ 202 (343)
T 3lrv_A 138 NTEYFIWADNRG------TIGFQSYEDDSQYIVHS---AKSDVEYSSGVLHKDSLLLALYSPDG------ILDVYNLSSP 202 (343)
T ss_dssp -CCEEEEEETTC------CEEEEESSSSCEEEEEC---CCSSCCCCEEEECTTSCEEEEECTTS------CEEEEESSCT
T ss_pred CCCEEEEEeCCC------cEEEEECCCCcEEEEEe---cCCCCceEEEEECCCCCEEEEEcCCC------EEEEEECCCC
Confidence 456777787654 48899998887644431 1111112223332 567788887543 4889999876
Q ss_pred ceE--EecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCe
Q 008611 334 TWD--EIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTME 385 (559)
Q Consensus 334 ~W~--~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~ 385 (559)
.-. .+.. .....-.++....++..++.|+ . +.+.+||+.+..
T Consensus 203 ~~~~~~~~~----~h~~~v~~l~fs~~g~~l~s~~-~-----~~v~iwd~~~~~ 246 (343)
T 3lrv_A 203 DQASSRFPV----DEEAKIKEVKFADNGYWMVVEC-D-----QTVVCFDLRKDV 246 (343)
T ss_dssp TSCCEECCC----CTTSCEEEEEECTTSSEEEEEE-S-----SBEEEEETTSST
T ss_pred CCCccEEec----cCCCCEEEEEEeCCCCEEEEEe-C-----CeEEEEEcCCCC
Confidence 543 2221 0111223344444565666666 2 158899987653
No 272
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=73.74 E-value=59 Score=30.36 Aligned_cols=185 Identities=8% Similarity=0.020 Sum_probs=91.4
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCe--EEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCCCCCcc
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWA--WSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEII 272 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~ 272 (559)
.+++++.|..+ +.+.++|..+++ |+.-... .....+..+.-+|.+|+.+ .+
T Consensus 4 ~~~~lv~~~~~-----~~v~~~d~~tG~~~w~~~~~~--------------~~~~~~~~~~pdG~ilvs~--------~~ 56 (276)
T 3no2_A 4 PQHLLVGGSGW-----NKIAIINKDTKEIVWEYPLEK--------------GWECNSVAATKAGEILFSY--------SK 56 (276)
T ss_dssp CCEEEEECTTC-----SEEEEEETTTTEEEEEEECCT--------------TCCCCEEEECTTSCEEEEC--------BS
T ss_pred CCcEEEeeCCC-----CEEEEEECCCCeEEEEeCCCc--------------cCCCcCeEECCCCCEEEeC--------CC
Confidence 46777776532 568899987875 5543110 0122223333477888832 23
Q ss_pred eEEEEECCCCe--EEEeccCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEEEECCCC-ceEEecCCC-CCCCc
Q 008611 273 QVKVFDLQTCS--WSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETM-TWDEIDAVG-VPPSP 347 (559)
Q Consensus 273 ~v~~yd~~t~~--W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~-~W~~~~~~~-~~p~~ 347 (559)
.+..||+ +++ |+.-. +.....+++... ++.+++....+ ...++.+|++.. .|+.....+ ..+..
T Consensus 57 ~V~~~d~-~G~~~W~~~~-----~~~~~~~~~~~~~dG~~lv~~~~~-----~~~v~~vd~~Gk~l~~~~~~~~~~~~~~ 125 (276)
T 3no2_A 57 GAKMITR-DGRELWNIAA-----PAGCEMQTARILPDGNALVAWCGH-----PSTILEVNMKGEVLSKTEFETGIERPHA 125 (276)
T ss_dssp EEEEECT-TSCEEEEEEC-----CTTCEEEEEEECTTSCEEEEEEST-----TEEEEEECTTSCEEEEEEECCSCSSGGG
T ss_pred CEEEECC-CCCEEEEEcC-----CCCccccccEECCCCCEEEEecCC-----CCEEEEEeCCCCEEEEEeccCCCCcccc
Confidence 5899998 443 66442 111122334443 45555543321 235778887543 243321111 01111
Q ss_pred ccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCC-eeEeccCCCCCCCCccccEEEEECCceecceeeeeeccCCCc
Q 008611 348 RSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTM-EWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGED 426 (559)
Q Consensus 348 r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~-~W~~~~~~~~~p~~R~~hs~~~~~~~~~iG~s~~~~~~~~~~ 426 (559)
. .+.+....++.+++.... .+.+.+||+... .|+.-. + ...+++..+. .+
T Consensus 126 ~-~~~v~~~~~G~~lv~~~~-----~~~v~~~d~~G~~~w~~~~--~-----~~~~~~~~~~----------------~g 176 (276)
T 3no2_A 126 Q-FRQINKNKKGNYLVPLFA-----TSEVREIAPNGQLLNSVKL--S-----GTPFSSAFLD----------------NG 176 (276)
T ss_dssp S-CSCCEECTTSCEEEEETT-----TTEEEEECTTSCEEEEEEC--S-----SCCCEEEECT----------------TS
T ss_pred c-ccCceECCCCCEEEEecC-----CCEEEEECCCCCEEEEEEC--C-----CCccceeEcC----------------CC
Confidence 1 122333444445555432 245899998743 465432 1 1123344332 22
Q ss_pred EEEEEcCcCCCCcccEEEEeCCCc
Q 008611 427 VIVAFGGYNGRYNNEVHVLKPSHK 450 (559)
Q Consensus 427 ~l~v~GG~~~~~~~~v~~~d~~~~ 450 (559)
.+++.+..+ ..|+.+|+.+.
T Consensus 177 ~~~v~~~~~----~~v~~~d~~tG 196 (276)
T 3no2_A 177 DCLVACGDA----HCFVQLNLESN 196 (276)
T ss_dssp CEEEECBTT----SEEEEECTTTC
T ss_pred CEEEEeCCC----CeEEEEeCcCC
Confidence 566665432 35889998865
No 273
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=73.48 E-value=59 Score=30.25 Aligned_cols=151 Identities=7% Similarity=0.097 Sum_probs=71.7
Q ss_pred CEEEEEccCCCCcccCcEEEEEcCCC-------eEEEeeeccccCCCCCCCCCCCCCCccceeEEe--C--CEEEEEecc
Q 008611 196 DKMYIYGGNHNGRYLSDMHILDLRSW-------AWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--E--NKLLSIAGH 264 (559)
Q Consensus 196 ~~lyv~GG~~~~~~~~~v~~yd~~t~-------~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~--~~lyv~GG~ 264 (559)
+.+++.|+.+ ..+.+||+.+. .|..+.... .....-..+.+ + +.+++.|+.
T Consensus 71 ~~~l~s~~~d-----g~v~vwd~~~~~~~~~~~~~~~~~~~~-------------~~~~~v~~~~~~~~~~~~~l~~~~~ 132 (351)
T 3f3f_A 71 GRIIASASYD-----KTVKLWEEDPDQEECSGRRWNKLCTLN-------------DSKGSLYSVKFAPAHLGLKLACLGN 132 (351)
T ss_dssp CSEEEEEETT-----SCEEEEEECTTSCTTSSCSEEEEEEEC-------------CCSSCEEEEEECCGGGCSEEEEEET
T ss_pred CCEEEEEcCC-----CeEEEEecCCCcccccccCcceeeeec-------------ccCCceeEEEEcCCCCCcEEEEecC
Confidence 6677777743 35778888764 344444332 11111222223 3 667777775
Q ss_pred CCCCCCcceEEEEECCCCe----EEEec---cCCCCCCC-ccceEEEEE-----CCEEEEEcCcCCCCCCcCceEEEECC
Q 008611 265 TKDPSEIIQVKVFDLQTCS----WSTLK---TYGKPPVS-RGGQSVTLV-----GTSLVIFGGEDAKRSLLNDLHILDLE 331 (559)
Q Consensus 265 ~~~~~~~~~v~~yd~~t~~----W~~~~---~~g~~p~~-r~~~~~~~~-----~~~lyv~GG~~~~~~~~~~~~~yd~~ 331 (559)
++ .+..||+.+.+ |.... .....+.. .....+..+ ++.+++.|+.++ .+..++..
T Consensus 133 dg------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~------~~~~~~~~ 200 (351)
T 3f3f_A 133 DG------ILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQ------AIIYQRGK 200 (351)
T ss_dssp TC------EEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTE------EEEEEECT
T ss_pred CC------cEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCC------cEEEEccC
Confidence 43 58888877643 32111 00001111 111112222 256667776532 24455555
Q ss_pred CCceEEecCCCCCCCcccccEEEEEcCC----EEEEEcCCCCCCCcCceEEEECCC
Q 008611 332 TMTWDEIDAVGVPPSPRSDHAAAVHAER----YLLIFGGGSHAACFNDLHVLDLQT 383 (559)
Q Consensus 332 t~~W~~~~~~~~~p~~r~~~~~~~~~~~----~l~v~GG~~~~~~~~dv~~~d~~~ 383 (559)
......+.... .....-.+++...++ .+++.|+.+ ..+.+||+.+
T Consensus 201 ~~~~~~~~~~~--~h~~~i~~~~~~p~~~~~~~~l~s~~~d-----g~i~iwd~~~ 249 (351)
T 3f3f_A 201 DGKLHVAAKLP--GHKSLIRSISWAPSIGRWYQLIATGCKD-----GRIRIFKITE 249 (351)
T ss_dssp TSCEEEEEECC--CCCSCEEEEEECCCSSCSSEEEEEEETT-----SCEEEEEEEE
T ss_pred CCceeeeeecC--CCCcceeEEEECCCCCCcceEEEEEcCC-----CeEEEEeCCC
Confidence 66654443321 111222344444454 678887754 2366666654
No 274
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=73.39 E-value=59 Score=30.23 Aligned_cols=107 Identities=16% Similarity=0.217 Sum_probs=53.6
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCC--CeEEEeeeccccCCCCCCCCCCCCCCccceeEEe----CCEEEEEeccCCCC
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRS--WAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW----ENKLLSIAGHTKDP 268 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t--~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~ 268 (559)
++.+++.|+.+ ..+.+||+.+ ..+..+.... .....-.++.+ ++.+++.|+.++
T Consensus 22 ~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~-------------~~~~~v~~~~~~~~~d~~~l~s~~~dg-- 81 (351)
T 3f3f_A 22 YGRHVATCSSD-----QHIKVFKLDKDTSNWELSDSWR-------------AHDSSIVAIDWASPEYGRIIASASYDK-- 81 (351)
T ss_dssp SSSEEEEEETT-----SEEEEEEECSSSCCEEEEEEEE-------------CCSSCEEEEEECCGGGCSEEEEEETTS--
T ss_pred CCCEEEEeeCC-----CeEEEEECCCCCCcceecceec-------------cCCCcEEEEEEcCCCCCCEEEEEcCCC--
Confidence 45566667633 3577777764 3444443322 11111222333 367888887754
Q ss_pred CCcceEEEEECCCC-------eEEEeccCCCCCCCccceEEEEE-C--CEEEEEcCcCCCCCCcCceEEEECCCC
Q 008611 269 SEIIQVKVFDLQTC-------SWSTLKTYGKPPVSRGGQSVTLV-G--TSLVIFGGEDAKRSLLNDLHILDLETM 333 (559)
Q Consensus 269 ~~~~~v~~yd~~t~-------~W~~~~~~g~~p~~r~~~~~~~~-~--~~lyv~GG~~~~~~~~~~~~~yd~~t~ 333 (559)
.+.+||+.+. .|..+....... ..-.+++.. + +.+++.|+.+ ..+.+||+.+.
T Consensus 82 ----~v~vwd~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~l~~~~~d------g~v~iwd~~~~ 144 (351)
T 3f3f_A 82 ----TVKLWEEDPDQEECSGRRWNKLCTLNDSK--GSLYSVKFAPAHLGLKLACLGND------GILRLYDALEP 144 (351)
T ss_dssp ----CEEEEEECTTSCTTSSCSEEEEEEECCCS--SCEEEEEECCGGGCSEEEEEETT------CEEEEEECSST
T ss_pred ----eEEEEecCCCcccccccCcceeeeecccC--CceeEEEEcCCCCCcEEEEecCC------CcEEEecCCCh
Confidence 3777777654 344443211111 111122222 2 5667777653 34788887654
No 275
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=73.18 E-value=8.7 Score=29.93 Aligned_cols=33 Identities=9% Similarity=0.184 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 008611 515 LIATLKAEKEELESSLSKEKLQSIQLKQDLTEA 547 (559)
Q Consensus 515 ~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~ 547 (559)
.+..|+.++++-+......+.+..+++++|+++
T Consensus 27 e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeL 59 (97)
T 2eqb_B 27 EVKRLREDIAKENELRTKAEEEADKLNKEVEDL 59 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444
No 276
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=73.16 E-value=71 Score=31.07 Aligned_cols=110 Identities=17% Similarity=0.144 Sum_probs=57.4
Q ss_pred CCEEEEEeccCCCCCCcceEEEEECCCC--eEEEeccCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEEEECC
Q 008611 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTC--SWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLE 331 (559)
Q Consensus 255 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~--~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~ 331 (559)
++.+++.|+.+. .+..+|+... .-..+. + .... -.+++.. ++..++.|+.++ .+.+||+.
T Consensus 217 ~~~~l~sgs~D~------~v~~wd~~~~~~~~~~~~--~--h~~~-v~~v~~~p~~~~l~s~s~D~------~i~lwd~~ 279 (380)
T 3iz6_a 217 NANMFISGSCDT------TVRLWDLRITSRAVRTYH--G--HEGD-INSVKFFPDGQRFGTGSDDG------TCRLFDMR 279 (380)
T ss_dssp SCCEEEEEETTS------CEEEEETTTTCCCCEEEC--C--CSSC-CCEEEECTTSSEEEEECSSS------CEEEEETT
T ss_pred CCCEEEEEECCC------eEEEEECCCCCcceEEEC--C--cCCC-eEEEEEecCCCeEEEEcCCC------eEEEEECC
Confidence 567888888754 4788887632 112221 0 0011 1122222 557777887653 47889988
Q ss_pred CCceEEecCCCCC--CC-cccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCee
Q 008611 332 TMTWDEIDAVGVP--PS-PRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEW 386 (559)
Q Consensus 332 t~~W~~~~~~~~~--p~-~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W 386 (559)
+..-...-..... .. ...-.++++..++.+++.|+.+ ..+.+||+.+..-
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d-----g~i~vwd~~~~~~ 332 (380)
T 3iz6_a 280 TGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSN-----GDCYVWDTLLAEM 332 (380)
T ss_dssp TTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTT-----SCEEEEETTTCCE
T ss_pred CCcEEEEecccccccccccCceEEEEECCCCCEEEEEECC-----CCEEEEECCCCce
Confidence 7654333211000 00 0112344444456577777643 3588999876553
No 277
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=73.10 E-value=78 Score=31.52 Aligned_cols=152 Identities=9% Similarity=0.077 Sum_probs=82.7
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeC-CEEEEEeccCCCCCCcce
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWE-NKLLSIAGHTKDPSEIIQ 273 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~ 273 (559)
++.||+.... -+.+.++|+.++.-..+.... ...+.++.-+ +.||+...... ..
T Consensus 141 ~g~lyv~d~~-----~~~I~~id~~~g~~~~~~~~~---------------~~~~ia~~~~g~~l~~~d~~~~-----~~ 195 (409)
T 3hrp_A 141 NNTVLAYQRD-----DPRVRLISVDDNKVTTVHPGF---------------KGGKPAVTKDKQRVYSIGWEGT-----HT 195 (409)
T ss_dssp TTEEEEEETT-----TTEEEEEETTTTEEEEEEETC---------------CBCBCEECTTSSEEEEEBSSTT-----CE
T ss_pred CCCEEEEecC-----CCcEEEEECCCCEEEEeeccC---------------CCCceeEecCCCcEEEEecCCC-----ce
Confidence 5789998652 246999999988877664321 1122222223 45666543221 27
Q ss_pred EEEEECCCCe-EEEeccCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccc
Q 008611 274 VKVFDLQTCS-WSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSD 350 (559)
Q Consensus 274 v~~yd~~t~~-W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~ 350 (559)
++.||+.+.. ...+.... .+....-+++++. ++.||+..+ .+.+++||+.+.....+...+........
T Consensus 196 I~~~d~~~~~~~~~~g~~~-~~~~~~p~~iav~p~~g~lyv~d~-------~~~I~~~d~~~~~~~~~~~~~~~g~~~~~ 267 (409)
T 3hrp_A 196 VYVYMKASGWAPTRIGQLG-STFSGKIGAVALDETEEWLYFVDS-------NKNFGRFNVKTQEVTLIKQLELSGSLGTN 267 (409)
T ss_dssp EEEEEGGGTTCEEEEEECC-TTSCSCCCBCEECTTSSEEEEECT-------TCEEEEEETTTCCEEEEEECCCCSCCCCS
T ss_pred EEEEEcCCCceeEEeeecc-chhcCCcEEEEEeCCCCeEEEEEC-------CCcEEEEECCCCCEEEEecccccCCCCCC
Confidence 8999987543 22331110 1011222333333 568998322 24699999988876555221111111222
Q ss_pred --cEEEEEc-CCEEEEEcCCCCCCCcCceEEEECCCC
Q 008611 351 --HAAAVHA-ERYLLIFGGGSHAACFNDLHVLDLQTM 384 (559)
Q Consensus 351 --~~~~~~~-~~~l~v~GG~~~~~~~~dv~~~d~~~~ 384 (559)
+.+++.. ++.||+.... .+.|++||+...
T Consensus 268 P~~~ia~~p~~g~lyv~d~~-----~~~I~~~~~~g~ 299 (409)
T 3hrp_A 268 PGPYLIYYFVDSNFYMSDQN-----LSSVYKITPDGE 299 (409)
T ss_dssp SCCEEEEETTTTEEEEEETT-----TTEEEEECTTCC
T ss_pred ccccEEEeCCCCEEEEEeCC-----CCEEEEEecCCC
Confidence 1566665 5789987543 346899988765
No 278
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}
Probab=73.08 E-value=51 Score=29.34 Aligned_cols=154 Identities=14% Similarity=0.157 Sum_probs=78.8
Q ss_pred eEEEECCEEEEEccCCCCcccCcEEEEEcCC---CeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCC
Q 008611 190 GAAVVQDKMYIYGGNHNGRYLSDMHILDLRS---WAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTK 266 (559)
Q Consensus 190 ~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t---~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~ 266 (559)
|++.+.+++|+|-| +.+|+++... +-=..+...- +..|. ....+....++++|+|-|.
T Consensus 10 A~~~~~g~~~fFkg-------~~~w~~~~~~~~~gyP~~I~~~w---------~glP~-~iDAa~~~~~g~~yfFkg~-- 70 (196)
T 3c7x_A 10 TVAMLRGEMFVFKE-------RWFWRVRNNQVMDGYPMPIGQFW---------RGLPA-SINTAYERKDGKFVFFKGD-- 70 (196)
T ss_dssp EEEEETTEEEEEET-------TEEEEEETTEECTTCSEEHHHHS---------TTCCS-SCCEEEECTTSCEEEEETT--
T ss_pred EEEEcCCEEEEEEC-------CEEEEEECCccCCCCceEhhHhc---------cCCCC-CccEEEEeCCCcEEEecCC--
Confidence 34467899999988 5678875321 0001111100 11222 2232222247889999773
Q ss_pred CCCCcceEEEEECCCCe---EEEeccCC-CCCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEEEECCCCceEE----
Q 008611 267 DPSEIIQVKVFDLQTCS---WSTLKTYG-KPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETMTWDE---- 337 (559)
Q Consensus 267 ~~~~~~~v~~yd~~t~~---W~~~~~~g-~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~---- 337 (559)
..|+|+..+.. =..++..+ .+|......+.... ++++|+|=|. ..|+||..+.+-..
T Consensus 71 ------~yw~~~~~~~~~gyPk~I~~~~~glP~~~IDAA~~~~~~g~~yfFkG~--------~yw~yd~~~~~v~~gyPk 136 (196)
T 3c7x_A 71 ------KHWVFDEASLEPGYPKHIKELGRGLPTDKIDAALFWMPNGKTYFFRGN--------KYYRFNEELRAVDSEYPK 136 (196)
T ss_dssp ------EEEEEETTEECTTCSEEGGGTCBSCCSSCCSEEEEETTTTEEEEEETT--------EEEEEETTTTEECTTCSE
T ss_pred ------EEEEEeCCcccCCCCeEhhhcCCCCCCCcccEEEEEccCCEEEEEECC--------EEEEEeCCcccccCCCCc
Confidence 57888754221 11232222 13423333322222 5799999763 47899987653211
Q ss_pred -ecCCCCCCCcccccEEEEEcCC-EEEEEcCCCCCCCcCceEEEECCCCe
Q 008611 338 -IDAVGVPPSPRSDHAAAVHAER-YLLIFGGGSHAACFNDLHVLDLQTME 385 (559)
Q Consensus 338 -~~~~~~~p~~r~~~~~~~~~~~-~l~v~GG~~~~~~~~dv~~~d~~~~~ 385 (559)
+..-...| ..-.++....++ .+|+|=|. ..|+||..+.+
T Consensus 137 ~i~~~~gip--~~idaAf~~~~~~~~YfFkg~-------~y~r~d~~~~~ 177 (196)
T 3c7x_A 137 NIKVWEGIP--ESPRGSFMGSDEVFTYFYKGN-------KYWKFNNQKLK 177 (196)
T ss_dssp EGGGSBTCC--SSCSEEEECTTSSEEEEEETT-------EEEEEETTTTE
T ss_pred cHHHCCCcC--CCcceeEEecCCCEEEEEECC-------EEEEEECCcce
Confidence 11110112 222334444344 89999774 48999988765
No 279
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=73.00 E-value=9 Score=28.45 Aligned_cols=27 Identities=7% Similarity=0.024 Sum_probs=12.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHH
Q 008611 510 ETTEHLIATLKAEKEELESSLSKEKLQ 536 (559)
Q Consensus 510 ~~~~~~~~~l~~e~~~~~~~l~~~~~~ 536 (559)
++.+..+...+.+|....++|..++++
T Consensus 8 ~eLq~e~~~~E~QL~~A~QKLkdA~~~ 34 (78)
T 2ic6_A 8 KEVQDNITLHEQRLVTTRQKLKDAERA 34 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433
No 280
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=72.97 E-value=12 Score=27.96 Aligned_cols=41 Identities=12% Similarity=0.110 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhh
Q 008611 513 EHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTD 553 (559)
Q Consensus 513 ~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~ 553 (559)
|..++-+..-++++...+-+.++++.+|+.++..+..++++
T Consensus 20 E~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 20 ETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444555555555555555555555443
No 281
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=72.76 E-value=2 Score=42.11 Aligned_cols=70 Identities=14% Similarity=0.135 Sum_probs=48.8
Q ss_pred cccCCCChhhHHHHhhheeeeecCCCCCC--CCCCCC---h-----------hh----hhhHHHHhcC---CCCCHHH--
Q 008611 35 ELTSKFSNDSALLLYALYQQATVGPCNVP--KPSSWS---P-----------VE----QSKWKSWQGL---GNMATTE-- 89 (559)
Q Consensus 35 ~~~~~~~~~~~l~ly~l~kqa~~g~~~~~--~p~~~~---~-----------~~----~~k~~aw~~~---~~~s~~~-- 89 (559)
.+.-..+.++.++|=||--||..||++.. .|+.++ + .. ..=-++|+++ .|||+++
T Consensus 127 ~G~~~c~~e~a~~LAAl~~q~e~Gd~~~~~~~~~~l~~~~l~~~lP~~~~~~~~~~~~~~I~~~h~~~~~~~g~s~~~a~ 206 (322)
T 4dxa_B 127 KGFYTAPDAKLITLASLLLQIVYGNYESKKHKQGFLNEENLKSIVPVTKLKSKAPHWTNRILHEYKNLSTSEGVSKEMHH 206 (322)
T ss_dssp HTCCCCCHHHHHHHHHHHHHHHHCSCCHHHHSSSCSCHHHHTTTSCTTTTTTTGGGSHHHHHHHHHHHHC--CCCCCHHH
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCCcccccccccchhhhhhhCCHHHHhcCHHHHHHHHHHHHHhcccccCCChhHHH
Confidence 34567889999999999999999998642 344332 0 01 1124679999 9999754
Q ss_pred HHHHHHHHHHHhCCCc
Q 008611 90 AMRLFVKILEEEDPGW 105 (559)
Q Consensus 90 a~~~yv~~~~~~~~~~ 105 (559)
|+..|++++.++ |.|
T Consensus 207 a~~~yL~~~~~l-p~y 221 (322)
T 4dxa_B 207 LQRMFLQNCWEI-PTY 221 (322)
T ss_dssp HHHHHHHHHHTS-TTT
T ss_pred HHHHHHHHHhcC-CCc
Confidence 699999999854 444
No 282
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=72.63 E-value=5.7 Score=22.95 Aligned_cols=25 Identities=24% Similarity=0.474 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHh
Q 008611 525 ELESSLSKEKLQSIQLKQDLTEAES 549 (559)
Q Consensus 525 ~~~~~l~~~~~~~~~l~~~~~~~~~ 549 (559)
+++....+.+.++-||++++++++.
T Consensus 5 qlekevaqaeaenyqleqevaqleh 29 (33)
T 1fmh_A 5 QLEKEVAQAEAENYQLEQEVAQLEH 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3444455555556666666666553
No 283
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}
Probab=71.91 E-value=45 Score=30.44 Aligned_cols=106 Identities=12% Similarity=0.139 Sum_probs=57.0
Q ss_pred eCCEEEEEeccCCCCCCcceEEEEECCC----CeEEE----eccC-CCCCCC--ccceEEEEE---CCEEEEEcCcCCCC
Q 008611 254 WENKLLSIAGHTKDPSEIIQVKVFDLQT----CSWST----LKTY-GKPPVS--RGGQSVTLV---GTSLVIFGGEDAKR 319 (559)
Q Consensus 254 ~~~~lyv~GG~~~~~~~~~~v~~yd~~t----~~W~~----~~~~-g~~p~~--r~~~~~~~~---~~~lyv~GG~~~~~ 319 (559)
.++.+|+|=|. .+|+||..+ ..... ++.. ..+|.. ....-++.. ++++|+|-|
T Consensus 69 ~~g~~~fFkg~--------~~W~~d~~~~t~~~~~~~gP~~I~~~wp~LP~~~~~~~IDAA~~~~~~gk~yfFkG----- 135 (225)
T 3oyo_A 69 EASEAYVFSGN--------HSAYIDYAPGTTNDKILVGPTTIAEMFPVLNNTVFEDSIDSAFRSTKGKEVYLFKG----- 135 (225)
T ss_dssp STTEEEEEETT--------EEEEEECCTTSSCCEEEEEEEEHHHHCGGGTTSTTTSCCCEEEECSSTTEEEEEET-----
T ss_pred CCCeEEEEcCC--------EEEEEecccccCCCceecCchhhhhcCCCCCCcccccccceEEEECCCCcEEEEeC-----
Confidence 47999999874 588887632 22211 1110 012321 002223332 579999977
Q ss_pred CCcCceEEEECCCCceEEe-cCCC-CCCC------cccccEEEEE-cCCEEEEEcCCCCCCCcCceEEEECC
Q 008611 320 SLLNDLHILDLETMTWDEI-DAVG-VPPS------PRSDHAAAVH-AERYLLIFGGGSHAACFNDLHVLDLQ 382 (559)
Q Consensus 320 ~~~~~~~~yd~~t~~W~~~-~~~~-~~p~------~r~~~~~~~~-~~~~l~v~GG~~~~~~~~dv~~~d~~ 382 (559)
+..|+||..+.+...- .... ..|. +..-.++... .++++|+|-|. ..|+||..
T Consensus 136 ---~~yw~~d~~~~~~~~gPk~I~~~fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG~-------~ywr~d~~ 197 (225)
T 3oyo_A 136 ---NKYVRIAYDSKQLVGNIRNIGDGFPVLNGTEFESGIDACFASHKEPEAYLFKGQ-------NYVRIDFT 197 (225)
T ss_dssp ---TEEEEEETTTTEEEEEEEEHHHHCGGGTTSTTTTCCSEEEECSSTTEEEEEETT-------EEEEEECC
T ss_pred ---CeEEEEECCCCeecCCCcchhhcCCCcccccCCCCcCEEEEeCCCCEEEEEECC-------EEEEEeCC
Confidence 3589999776655431 0000 0111 2222333333 46789999874 48999987
No 284
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=71.80 E-value=65 Score=30.04 Aligned_cols=152 Identities=9% Similarity=-0.026 Sum_probs=76.6
Q ss_pred EEECCEEEEEccCCCCcccCcEEEEEcCCC--eEEEeeeccccCCCCCCCCCCCCCCccceeEEe-CCEEEEEeccCCCC
Q 008611 192 AVVQDKMYIYGGNHNGRYLSDMHILDLRSW--AWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-ENKLLSIAGHTKDP 268 (559)
Q Consensus 192 ~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~ 268 (559)
+..+++||+.+. +.++.||+ ++ .|+.-.. ....-+++... ++.+++..+..
T Consensus 44 ~~pdG~ilvs~~-------~~V~~~d~-~G~~~W~~~~~---------------~~~~~~~~~~~~dG~~lv~~~~~--- 97 (276)
T 3no2_A 44 ATKAGEILFSYS-------KGAKMITR-DGRELWNIAAP---------------AGCEMQTARILPDGNALVAWCGH--- 97 (276)
T ss_dssp ECTTSCEEEECB-------SEEEEECT-TSCEEEEEECC---------------TTCEEEEEEECTTSCEEEEEEST---
T ss_pred ECCCCCEEEeCC-------CCEEEECC-CCCEEEEEcCC---------------CCccccccEECCCCCEEEEecCC---
Confidence 334678888432 45999998 54 4654311 11122333333 56666654421
Q ss_pred CCcceEEEEECCCCe-EEEeccCC-CCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCC-ceEEecCCCCCC
Q 008611 269 SEIIQVKVFDLQTCS-WSTLKTYG-KPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETM-TWDEIDAVGVPP 345 (559)
Q Consensus 269 ~~~~~v~~yd~~t~~-W~~~~~~g-~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~-~W~~~~~~~~~p 345 (559)
...++.+|+.... |+.....+ ..+...........++.+++.... .+.+.+||+.-. .|+.-.. ..
T Consensus 98 --~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~------~~~v~~~d~~G~~~w~~~~~--~~- 166 (276)
T 3no2_A 98 --PSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFA------TSEVREIAPNGQLLNSVKLS--GT- 166 (276)
T ss_dssp --TEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETT------TTEEEEECTTSCEEEEEECS--SC-
T ss_pred --CCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecC------CCEEEEECCCCCEEEEEECC--CC-
Confidence 2468888875442 44322111 011111112222334555554432 245889998722 3554321 11
Q ss_pred CcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCC--eeEec
Q 008611 346 SPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTM--EWSRP 389 (559)
Q Consensus 346 ~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~--~W~~~ 389 (559)
-+++....++.++|.+... +.+..||+.+. .|+.-
T Consensus 167 ----~~~~~~~~~g~~~v~~~~~-----~~v~~~d~~tG~~~w~~~ 203 (276)
T 3no2_A 167 ----PFSSAFLDNGDCLVACGDA-----HCFVQLNLESNRIVRRVN 203 (276)
T ss_dssp ----CCEEEECTTSCEEEECBTT-----SEEEEECTTTCCEEEEEE
T ss_pred ----ccceeEcCCCCEEEEeCCC-----CeEEEEeCcCCcEEEEec
Confidence 2345555566677776542 35899999855 47654
No 285
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=71.76 E-value=72 Score=30.55 Aligned_cols=172 Identities=9% Similarity=0.016 Sum_probs=87.4
Q ss_pred eEEecccCCCCCCcccceeEEEE-CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccce
Q 008611 172 QWIAPPISGQRPKARYEHGAAVV-QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHS 250 (559)
Q Consensus 172 ~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~ 250 (559)
.|+.+.. |....-.++... .+.+|++|- . ..+++-.-...+|+.+.... ........+
T Consensus 26 ~W~~~~~----~~~~~~~~v~~~~~~~~~~~G~-~-----g~i~~s~DgG~tW~~~~~~~-----------~~~~~~~~~ 84 (327)
T 2xbg_A 26 PWEAIQL----PTTATILDMSFIDRHHGWLVGV-N-----ATLMETRDGGQTWEPRTLVL-----------DHSDYRFNS 84 (327)
T ss_dssp CEEEEEC----SCSSCEEEEEESSSSCEEEEET-T-----TEEEEESSTTSSCEECCCCC-----------SCCCCEEEE
T ss_pred CceEeec----CCCCcEEEEEECCCCcEEEEcC-C-----CeEEEeCCCCCCCeECCCCC-----------CCCCccEEE
Confidence 8998763 222233333333 467888653 1 12444332345899875321 001112233
Q ss_pred eEEeCCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEE-ECCEEEEEcCcCCCCCCcCceEEEE
Q 008611 251 LIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTL-VGTSLVIFGGEDAKRSLLNDLHILD 329 (559)
Q Consensus 251 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~yd 329 (559)
+...++.+|+.|-. ..+++-+-.-.+|+.+......|.. .+.++. -++.+|+.|.. ..+++-+
T Consensus 85 i~~~~~~~~~~g~~-------g~i~~S~DgG~tW~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~-------g~v~~S~ 148 (327)
T 2xbg_A 85 VSFQGNEGWIVGEP-------PIMLHTTDGGQSWSQIPLDPKLPGS--PRLIKALGNGSAEMITNV-------GAIYRTK 148 (327)
T ss_dssp EEEETTEEEEEEET-------TEEEEESSTTSSCEECCCCTTCSSC--EEEEEEEETTEEEEEETT-------CCEEEES
T ss_pred EEecCCeEEEEECC-------CeEEEECCCCCCceECccccCCCCC--eEEEEEECCCCEEEEeCC-------ccEEEEc
Confidence 33446788887532 1344433234689998632112221 233333 35788887742 1355544
Q ss_pred CCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECC-CCeeEecc
Q 008611 330 LETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQ-TMEWSRPT 390 (559)
Q Consensus 330 ~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~-~~~W~~~~ 390 (559)
-.-.+|+.+... .+...+.++...++.+|++|-. ..+++-+-. ..+|..+.
T Consensus 149 DgG~tW~~~~~~----~~~~~~~~~~~~~~~~~~~g~~------G~~~~S~d~gG~tW~~~~ 200 (327)
T 2xbg_A 149 DSGKNWQALVQE----AIGVMRNLNRSPSGEYVAVSSR------GSFYSTWEPGQTAWEPHN 200 (327)
T ss_dssp STTSSEEEEECS----CCCCEEEEEECTTSCEEEEETT------SSEEEEECTTCSSCEEEE
T ss_pred CCCCCCEEeecC----CCcceEEEEEcCCCcEEEEECC------CcEEEEeCCCCCceeECC
Confidence 345689998632 2333455555556667766532 235554433 57899874
No 286
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=71.64 E-value=1.2e+02 Score=32.82 Aligned_cols=81 Identities=17% Similarity=0.135 Sum_probs=48.2
Q ss_pred eEEEECCEEEEEccCCCCcccCcEEEEEcCCCe--EEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCC
Q 008611 190 GAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWA--WSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKD 267 (559)
Q Consensus 190 ~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~ 267 (559)
+.++.++.||+... -..++.+|..|++ |+.-.... .........+-++.++.+|+-.+...
T Consensus 116 ~~~~~~g~v~v~~~------dg~l~AlDa~TG~~~W~~~~~~~----------~~~~~~~~~sP~v~~g~v~vg~~~~~- 178 (689)
T 1yiq_A 116 GVAVWKGKVYVGVL------DGRLEAIDAKTGQRAWSVDTRAD----------HKRSYTITGAPRVVNGKVVIGNGGAE- 178 (689)
T ss_dssp CCEEETTEEEEECT------TSEEEEEETTTCCEEEEEECCSC----------TTSCCBCCSCCEEETTEEEECCBCTT-
T ss_pred ccEEECCEEEEEcc------CCEEEEEECCCCCEeeeecCcCC----------CCCCccccCCcEEECCEEEEEeCCCc-
Confidence 34667888888653 2468999998874 87643200 00111222234556888877433211
Q ss_pred CCCcceEEEEECCCCe--EEEe
Q 008611 268 PSEIIQVKVFDLQTCS--WSTL 287 (559)
Q Consensus 268 ~~~~~~v~~yd~~t~~--W~~~ 287 (559)
......++.||+.|++ |+.-
T Consensus 179 ~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 179 FGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp TCCBCEEEEEETTTCCEEEEEE
T ss_pred cCCCCEEEEEECCCCcEEEEec
Confidence 1234579999999876 8865
No 287
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=71.38 E-value=10 Score=28.40 Aligned_cols=22 Identities=5% Similarity=0.105 Sum_probs=8.6
Q ss_pred HHHHHHHhhhHHHHHHHHHhhh
Q 008611 530 LSKEKLQSIQLKQDLTEAESQN 551 (559)
Q Consensus 530 l~~~~~~~~~l~~~~~~~~~~~ 551 (559)
....++++.+|+.+++.++.++
T Consensus 45 ~~~L~~eN~~L~~~v~~L~~E~ 66 (78)
T 1gu4_A 45 VLELTAENERLQKKVEQLSREL 66 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444443333
No 288
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=71.02 E-value=8.5 Score=29.16 Aligned_cols=44 Identities=11% Similarity=0.025 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHh
Q 008611 512 TEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLY 555 (559)
Q Consensus 512 ~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 555 (559)
+-.++..-...+..++.+.+..+.+..+|++++.+++++++.|.
T Consensus 38 K~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 38 RAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33445555555566666666666666666666666666665543
No 289
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=70.99 E-value=13 Score=26.60 Aligned_cols=35 Identities=20% Similarity=0.163 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQ 550 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~ 550 (559)
+++|..+.++++....+...++..|+.++..+...
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555444433
No 290
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A
Probab=70.62 E-value=62 Score=29.32 Aligned_cols=156 Identities=15% Similarity=0.124 Sum_probs=78.4
Q ss_pred eEEEECCEEEEEccCCCCcccCcEEEEEcCCCe-EEEeeeccccCCCCCCCCCCCCCCccceeEE-eCCEEEEEeccCCC
Q 008611 190 GAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWA-WSKIQAKAVAESTESPSPALLTPCAGHSLIP-WENKLLSIAGHTKD 267 (559)
Q Consensus 190 ~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~-W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~ 267 (559)
|++.+.+++|+|=| +.+|+++..... ......... -+..| .....+... .++++|+|-|.
T Consensus 35 Ai~~~~g~~~fFkg-------~~~Wr~~~~~~~~~~P~~I~~~-------wp~lp-~~IDAA~~~~~~~k~yfFkG~--- 96 (218)
T 1gen_A 35 GIAQIRGEIFFFKD-------RFIWRTVTPRDKPMGPLLVATF-------WPELP-EKIDAVYEAPQEEKAVFFAGN--- 96 (218)
T ss_dssp EEEEETTEEEEEET-------TEEEEESSTTSCCEEEEEGGGT-------CTTSC-SCCSEEEEETTTTEEEEEETT---
T ss_pred EEEeCCCcEEEEEC-------CEEEEEeCCCCccCCCEEHHHh-------cCCCC-CCccEEEEECCCCEEEEEeCC---
Confidence 44557899999977 567777654422 221111100 01122 223322222 26899999773
Q ss_pred CCCcceEEEEECCCCe---EEEeccCCCCCCCc-cceEEEEE--CCEEEEEcCcCCCCCCcCceEEEECCCCceEE----
Q 008611 268 PSEIIQVKVFDLQTCS---WSTLKTYGKPPVSR-GGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDE---- 337 (559)
Q Consensus 268 ~~~~~~v~~yd~~t~~---W~~~~~~g~~p~~r-~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~---- 337 (559)
..|+||..+.. =..|...| .|... .--++... ++++|+|-| +..|+||..+.+-..
T Consensus 97 -----~yW~y~~~~~~~gyPk~I~~~g-~p~~~~~IDAAf~~~~~g~~YfFkG--------~~ywr~d~~~~~v~~gyPr 162 (218)
T 1gen_A 97 -----EYWIYSASTLERGYPKPLTSLG-LPPDVQRVDAAFNWSKNKKTYIFAG--------DKFWRYNEVKKKMDPGFPK 162 (218)
T ss_dssp -----EEEEEETTEECTTCSEEGGGGT-CCTTCCCCSEEEEETTTTEEEEEET--------TEEEEEETTTTEECSSCCE
T ss_pred -----EEEEEcCccccCCCCccHhhcC-CCCCcCCccEEEEEcCCCeEEEEEC--------CEEEEEECccccccCCCCc
Confidence 58888853110 01122112 22211 12223332 579999976 358999987653221
Q ss_pred -ecCCCCCCCcccccEEEEEc-CCEEEEEcCCCCCCCcCceEEEECCCCe
Q 008611 338 -IDAVGVPPSPRSDHAAAVHA-ERYLLIFGGGSHAACFNDLHVLDLQTME 385 (559)
Q Consensus 338 -~~~~~~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~dv~~~d~~~~~ 385 (559)
+.. .-+..|..-.++.... ++.+|+|=|. ..|+||..+..
T Consensus 163 ~i~~-~w~g~p~~idaAf~~~~~g~~YfFkg~-------~y~~~~~~~~~ 204 (218)
T 1gen_A 163 LIAD-AWNAIPDNLDAVVDLQGGGHSYFFKGA-------YYLKLENQSLK 204 (218)
T ss_dssp EHHH-HSSSCCSSCSEEEECTTTCEEEEEETT-------EEEEEETTEEE
T ss_pred chhh-ccCCCCCCCCEEEEEcCCCcEEEEECC-------EEEEEECCcee
Confidence 110 0011122233444443 4789999774 48889876554
No 291
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=70.46 E-value=8.5 Score=28.70 Aligned_cols=43 Identities=12% Similarity=0.268 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
.++|+.-.+.++.-+++.+++...++..++-+....++|++.|
T Consensus 34 ~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~~l 76 (78)
T 3iv1_A 34 EEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSSAL 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444455555555555555555566666666554
No 292
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=70.19 E-value=13 Score=26.45 Aligned_cols=34 Identities=29% Similarity=0.338 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 008611 515 LIATLKAEKEELESSLSKEKLQSIQLKQDLTEAE 548 (559)
Q Consensus 515 ~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~ 548 (559)
.+.+|+.+.+.++......+.++..|+.++..+.
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555544444444444444444444444433
No 293
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=70.18 E-value=4.6 Score=34.21 Aligned_cols=41 Identities=17% Similarity=0.054 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhh
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYK 556 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~k 556 (559)
+..+..++++....++..+-++..|+-++..++.++..+++
T Consensus 84 i~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~ 124 (152)
T 3a7p_A 84 IRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKK 124 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333444444444444444443333
No 294
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=69.90 E-value=1.1e+02 Score=35.12 Aligned_cols=162 Identities=14% Similarity=0.103 Sum_probs=88.1
Q ss_pred CCCccceeEEeCCEEEEEeccCCCCCCcceEEEEECCCCeE-EEecc-CCCCCCCccceEEEEE---CCEEEEEcCcCCC
Q 008611 244 TPCAGHSLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSW-STLKT-YGKPPVSRGGQSVTLV---GTSLVIFGGEDAK 318 (559)
Q Consensus 244 ~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W-~~~~~-~g~~p~~r~~~~~~~~---~~~lyv~GG~~~~ 318 (559)
..-.|+++....+.+ ++|.-+.. .....++.|+.....| ..... .+.......++++++. +...||+|--...
T Consensus 332 ~~q~GfSa~~t~d~~-~~GapG~~-~w~G~v~~~~~~~~~~~~~~~~~~~~~~~sylGySVa~~~~~g~~~~v~GAP~~~ 409 (1095)
T 3k6s_A 332 MAQEGFSAVFTPDGP-VLGAVGSF-TWSGGAFLYPPNMSPTFINMSQENVDMRDSYLGYSTELALWKGVQSLVLGAPRYQ 409 (1095)
T ss_dssp BCCTTSSEECCTTCC-EEEESCST-TTTBEEEECCSSSCCEEECCCSSCCCCCSCCBTSSEECCCCSSSCEEEEEETTGG
T ss_pred cccccccceecCCcc-eEcccccC-CccceeEEecCCCcceeeccccccccccccccceeeEEeccCCceEEEEEccccc
Confidence 344566666665555 78765443 3345677777665443 22221 1122333445665542 2345666643211
Q ss_pred CCCcCceEEEECCCCceEEecC-CCCCCCcccccEEEEEc---C--CEEEEEcCCC--CCCCcCceEEEECCC--CeeEe
Q 008611 319 RSLLNDLHILDLETMTWDEIDA-VGVPPSPRSDHAAAVHA---E--RYLLIFGGGS--HAACFNDLHVLDLQT--MEWSR 388 (559)
Q Consensus 319 ~~~~~~~~~yd~~t~~W~~~~~-~~~~p~~r~~~~~~~~~---~--~~l~v~GG~~--~~~~~~dv~~~d~~~--~~W~~ 388 (559)
....+++|......|..... .|......+++++++.+ | ..|+++|.-. .......+++|.... ..|..
T Consensus 410 --~~G~V~i~~~~~~~~~~~~~~~g~~~gs~fG~sva~~DvngDG~~DllvvGAP~~~~~~~~G~Vyvy~~~~~~~~~~~ 487 (1095)
T 3k6s_A 410 --HTGKAVIFTQVSRQWRMKAEVTGTQIGSYFGASLCSVDVDSDGSTDLVLIGAPHYYEQTRGGQVSVCPLPRGWRRWWC 487 (1095)
T ss_dssp --GTCEEEEEECCTTTCCEEEEECCSSTTSCTTSCEEEECSSSSSSCCEEEEECSSCCSSCCCBCEEEEECCSSTTCCCS
T ss_pred --ccceEEEEEecCCcceEEeecccCcccCcCCceEEEEEeCCCCCccEEEECCccccCcCCCCEEEEEEeCCCCcceee
Confidence 24578999888778976542 34344556777777642 1 1377777421 122235688886543 45764
Q ss_pred ccCC-CCC--CCCccccEEEEECC
Q 008611 389 PTQQ-GEI--PTPRAGHAGVTIGE 409 (559)
Q Consensus 389 ~~~~-~~~--p~~R~~hs~~~~~~ 409 (559)
.... +.. +..|++++.+.++|
T Consensus 488 ~~~l~g~~~~~~~~FG~sva~~gD 511 (1095)
T 3k6s_A 488 DAVLYGEQGHPWGRFGAALTVLGD 511 (1095)
T ss_dssp CSSCCCCCSCSSCCBTSCEEEEEC
T ss_pred eEEeecccCCccccCccceEeecc
Confidence 3221 221 45789998888644
No 295
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=69.83 E-value=10 Score=27.74 Aligned_cols=43 Identities=9% Similarity=0.011 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
-+.-++.+.+++.++.+.+...+.|..++..+..++..|..||
T Consensus 24 ReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 24 RKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445567788888888888888888888888888888888776
No 296
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=69.71 E-value=12 Score=25.45 Aligned_cols=18 Identities=17% Similarity=0.412 Sum_probs=6.9
Q ss_pred HHHHHHHHHHhhhHHHHH
Q 008611 527 ESSLSKEKLQSIQLKQDL 544 (559)
Q Consensus 527 ~~~l~~~~~~~~~l~~~~ 544 (559)
..-|++...++.+|++++
T Consensus 29 ~~~L~~AR~el~~Lkeel 46 (51)
T 3m91_A 29 METLKEARQQLLALREEV 46 (51)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 297
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=69.50 E-value=16 Score=24.78 Aligned_cols=39 Identities=23% Similarity=0.175 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhH
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDL 554 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 554 (559)
..+++.++..+..+.+.....+.+-.++|..+..+++.|
T Consensus 11 ~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 11 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555555555555555555555555554444
No 298
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=69.28 E-value=11 Score=29.08 Aligned_cols=27 Identities=7% Similarity=0.024 Sum_probs=13.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHH
Q 008611 510 ETTEHLIATLKAEKEELESSLSKEKLQ 536 (559)
Q Consensus 510 ~~~~~~~~~l~~e~~~~~~~l~~~~~~ 536 (559)
++.|..+...+.+|....++|+.++++
T Consensus 8 ~eLq~e~~~~E~QL~~A~QKLkdA~~~ 34 (96)
T 2ic9_A 8 KEVQDNITLHEQRLVTTRQKLKDAERA 34 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555544443
No 299
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=69.04 E-value=9 Score=27.23 Aligned_cols=35 Identities=20% Similarity=0.146 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhh
Q 008611 523 KEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKV 557 (559)
Q Consensus 523 ~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ke 557 (559)
.++++......+.++..|..++..++.++..|...
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~ 58 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQVAQLKQK 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555555555555544433
No 300
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=68.99 E-value=73 Score=36.21 Aligned_cols=192 Identities=9% Similarity=0.014 Sum_probs=0.0
Q ss_pred CCcccceeEEE-ECCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCC-CccceeEEeCCEEEE
Q 008611 183 PKARYEHGAAV-VQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTP-CAGHSLIPWENKLLS 260 (559)
Q Consensus 183 p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~-r~~~~~~~~~~~lyv 260 (559)
+.......... -+++.++++. ...++++++.+.....+.. ... +..+.... ++..++
T Consensus 294 ~~~~v~~~~~S~pdG~~la~~~------~~~i~~~~~~~~~~~~~~~--------------~~~~~~~~~~~s-dg~~l~ 352 (1045)
T 1k32_A 294 SIPSKFAEDFSPLDGDLIAFVS------RGQAFIQDVSGTYVLKVPE--------------PLRIRYVRRGGD-TKVAFI 352 (1045)
T ss_dssp ECGGGGEEEEEECGGGCEEEEE------TTEEEEECTTSSBEEECSC--------------CSCEEEEEECSS-SEEEEE
T ss_pred cccccceeeecCCCCCEEEEEE------cCEEEEEcCCCCceEEccC--------------CCcceEEeeeEc-CCCeEE
Q ss_pred EeccCCCCCCcceEE-EEECCCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCCceEEec
Q 008611 261 IAGHTKDPSEIIQVK-VFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEID 339 (559)
Q Consensus 261 ~GG~~~~~~~~~~v~-~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~ 339 (559)
+++. ...++ .+|+.+.....+ ..........+..-+++.+++++.+. .++++|+.+.+-..+.
T Consensus 353 ~~s~------~~~l~~~~d~~~~~~~~l----~~~~~~~~~~~~SpDG~~la~~~~~~------~v~~~d~~tg~~~~~~ 416 (1045)
T 1k32_A 353 HGTR------EGDFLGIYDYRTGKAEKF----EENLGNVFAMGVDRNGKFAVVANDRF------EIMTVDLETGKPTVIE 416 (1045)
T ss_dssp EEET------TEEEEEEEETTTCCEEEC----CCCCCSEEEEEECTTSSEEEEEETTS------EEEEEETTTCCEEEEE
T ss_pred EEEC------CCceEEEEECCCCCceEe----cCCccceeeeEECCCCCEEEEECCCC------eEEEEECCCCceEEec
Q ss_pred CCCCCCCcccccEEEEEcCCEEEEEcCCCC-----CCCcCceEEEECCCCeeEeccCCCCCCCCccccEEEEECCceecc
Q 008611 340 AVGVPPSPRSDHAAAVHAERYLLIFGGGSH-----AACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLG 414 (559)
Q Consensus 340 ~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~-----~~~~~dv~~~d~~~~~W~~~~~~~~~p~~R~~hs~~~~~~~~~iG 414 (559)
.. ......+++...++..+++++... ......++++|+.+.....+. ........+.+..
T Consensus 417 ~~----~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~------~~~~~~~~~~~sp----- 481 (1045)
T 1k32_A 417 RS----REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT------TENSHDYAPAFDA----- 481 (1045)
T ss_dssp EC----SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECS------CSSSBEEEEEECT-----
T ss_pred cC----CCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEee------CCCcccCCceEcC-----
Q ss_pred eeeeeeccCCCcEEEEEcCcCC
Q 008611 415 LSLVVSSYSGEDVIVAFGGYNG 436 (559)
Q Consensus 415 ~s~~~~~~~~~~~l~v~GG~~~ 436 (559)
.+..+++++..+
T Consensus 482 ----------dG~~l~~~s~~~ 493 (1045)
T 1k32_A 482 ----------DSKNLYYLSYRS 493 (1045)
T ss_dssp ----------TSCEEEEEESCC
T ss_pred ----------CCCEEEEEeccc
No 301
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=68.94 E-value=51 Score=35.82 Aligned_cols=69 Identities=9% Similarity=-0.014 Sum_probs=35.8
Q ss_pred CcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccc-eeEEeCCEEEEEeccCCC---CCCcceEEEEECCCCeEEE
Q 008611 211 SDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGH-SLIPWENKLLSIAGHTKD---PSEIIQVKVFDLQTCSWST 286 (559)
Q Consensus 211 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~-~~~~~~~~lyv~GG~~~~---~~~~~~v~~yd~~t~~W~~ 286 (559)
..++.||+.+++=..+-... .......... -...-+++.++++..... .....+++.||+.+++...
T Consensus 36 ~~i~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~ 106 (740)
T 4a5s_A 36 NNILVFNAEYGNSSVFLENS---------TFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT 106 (740)
T ss_dssp TEEEEEETTTCCEEEEECTT---------TTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC
T ss_pred CcEEEEECCCCceEEEEech---------hhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE
Confidence 46899999998755442211 0000000000 111225655555543221 2334688999999998665
Q ss_pred ec
Q 008611 287 LK 288 (559)
Q Consensus 287 ~~ 288 (559)
+.
T Consensus 107 l~ 108 (740)
T 4a5s_A 107 EE 108 (740)
T ss_dssp SS
T ss_pred cc
Confidence 54
No 302
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=68.93 E-value=11 Score=29.82 Aligned_cols=38 Identities=8% Similarity=0.034 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhh
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTD 553 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~ 553 (559)
+..+.....+++..+...+..++.++.+++..+.++.+
T Consensus 32 ~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~e 69 (101)
T 3u1c_A 32 KKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHK 69 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444445555555555555555555554433
No 303
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=68.82 E-value=12 Score=31.13 Aligned_cols=41 Identities=15% Similarity=0.168 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 518 TLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 518 ~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
.+...+++.+......+.+..+++.++.+++.++.+++.-|
T Consensus 87 el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e~~l 127 (129)
T 2fxo_A 87 EMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLELTL 127 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333333333334444444445556666666666555444
No 304
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=68.81 E-value=80 Score=29.84 Aligned_cols=101 Identities=14% Similarity=0.089 Sum_probs=52.6
Q ss_pred cceEEEEECCCCeE-EEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCC--C-cCceEEEECCCCceEEecCCCCCCC
Q 008611 271 IIQVKVFDLQTCSW-STLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRS--L-LNDLHILDLETMTWDEIDAVGVPPS 346 (559)
Q Consensus 271 ~~~v~~yd~~t~~W-~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~--~-~~~~~~yd~~t~~W~~~~~~~~~p~ 346 (559)
...++.+|+.+++. ..+.. + .....+...+.+++.+..+.... . ...+|.+| +..+..+.. .
T Consensus 151 ~~~l~~~d~~~~~~~~~l~~----~---~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~-----~ 216 (347)
T 2gop_A 151 KTTFWIFDTESEEVIEEFEK----P---RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFE-----K 216 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEE----E---TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEE-----E
T ss_pred cceEEEEECCCCeEEeeecC----C---CcccccCCCCeEEEEEecccccccccccccEEEeC--CCceEEecc-----C
Confidence 46799999999887 66642 2 22233333333555453332111 2 45788888 677776642 1
Q ss_pred cccccEEEEEcCCEEEEEcCCCC--CCCcCceEEEECCCCeeEec
Q 008611 347 PRSDHAAAVHAERYLLIFGGGSH--AACFNDLHVLDLQTMEWSRP 389 (559)
Q Consensus 347 ~r~~~~~~~~~~~~l~v~GG~~~--~~~~~dv~~~d~~~~~W~~~ 389 (559)
.......-.+..|++.+.... ......|+++| +..+..+
T Consensus 217 --~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l 257 (347)
T 2gop_A 217 --VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGI 257 (347)
T ss_dssp --ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEES
T ss_pred --cceeeECCCCCEEEEEEccccCCccccceEEEEC--CCceEec
Confidence 112222223343444432211 12245799999 6666665
No 305
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=68.58 E-value=50 Score=34.45 Aligned_cols=111 Identities=13% Similarity=-0.011 Sum_probs=62.0
Q ss_pred CCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCCc
Q 008611 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMT 334 (559)
Q Consensus 255 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~ 334 (559)
++.++++.+... .+..||+.+++...+... +. ......-+++.+++++.+... ...++++|+.+..
T Consensus 121 g~~~~~~s~~~~------~~~l~d~~~g~~~~l~~~---~~---~~~~~spDG~~la~~~~~~~~--~~~i~~~d~~~g~ 186 (582)
T 3o4h_A 121 GEAVVFTGATED------RVALYALDGGGLRELARL---PG---FGFVSDIRGDLIAGLGFFGGG--RVSLFTSNLSSGG 186 (582)
T ss_dssp SSCEEEEEECSS------CEEEEEEETTEEEEEEEE---SS---CEEEEEEETTEEEEEEEEETT--EEEEEEEETTTCC
T ss_pred CCeEEEEecCCC------CceEEEccCCcEEEeecC---CC---ceEEECCCCCEEEEEEEcCCC--CeEEEEEcCCCCC
Confidence 345555554432 233778888887777521 22 222233356666665543322 2459999999999
Q ss_pred eEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeE
Q 008611 335 WDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWS 387 (559)
Q Consensus 335 W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~ 387 (559)
+..+... .......+...+++.++.+...+ ...|+++|+.+....
T Consensus 187 ~~~l~~~-----~~~~~~~~~SpDG~~l~~~~~~~---~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 187 LRVFDSG-----EGSFSSASISPGMKVTAGLETAR---EARLVTVDPRDGSVE 231 (582)
T ss_dssp CEEECCS-----SCEEEEEEECTTSCEEEEEECSS---CEEEEEECTTTCCEE
T ss_pred ceEeecC-----CCccccceECCCCCEEEEccCCC---eeEEEEEcCCCCcEE
Confidence 9877422 11223444444554444332221 246999999888776
No 306
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=68.48 E-value=21 Score=23.69 Aligned_cols=39 Identities=15% Similarity=0.189 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 008611 513 EHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQN 551 (559)
Q Consensus 513 ~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 551 (559)
++.+..|++-...+-.+.++.+..+.+++|++.-+++-|
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LL 41 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLL 41 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 345666666666666666666666666666665554443
No 307
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1
Probab=68.16 E-value=65 Score=28.59 Aligned_cols=109 Identities=16% Similarity=0.179 Sum_probs=57.9
Q ss_pred eeEEeCCEEEEEeccCCCCCCcceEEEEECCCC--eEEE--eccC-CCCCCCccceEEEEE--CCEEEEEcCcCCCCCCc
Q 008611 250 SLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTC--SWST--LKTY-GKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLL 322 (559)
Q Consensus 250 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~--~W~~--~~~~-g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~ 322 (559)
+++.++|.+|+|=|. -+|+++.... .... ++.. ..+|... . ++... ++++|+|-|
T Consensus 11 Ai~~~~g~~yfFkg~--------~~Wr~~~~~~~~~~~p~~Is~~w~glP~~I-D-Aa~~~~~~~~~yfFkG-------- 72 (195)
T 1itv_A 11 AIAEIGNQLYLFKDG--------KYWRFSEGRGSRPQGPFLIADKWPALPRKL-D-SVFEEPLSKKLFFFSG-------- 72 (195)
T ss_dssp EEEEETTEEEEEETT--------EEEEECCSSSCCCEEEEEHHHHCTTSCSSC-S-EEEECTTTCCEEEEET--------
T ss_pred EEEEeCCEEEEEECC--------EEEEEECCccccCCCcEEhhhccCCCCCCc-c-EEEEECCCCeEEEEeC--------
Confidence 345579999999774 4777776542 2222 2111 1244322 2 22222 578999977
Q ss_pred CceEEEECCCCce-EEecCCCCCCC--cccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCe
Q 008611 323 NDLHILDLETMTW-DEIDAVGVPPS--PRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTME 385 (559)
Q Consensus 323 ~~~~~yd~~t~~W-~~~~~~~~~p~--~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~ 385 (559)
+..|+|+..+..- ..+...| .|. .....+. ...++++|+|-|. ..|+||..+.+
T Consensus 73 ~~yw~~~~~~~~~Pk~i~~~G-~p~~~~~iDAA~-~~~~g~~yfFkg~-------~ywr~d~~~~~ 129 (195)
T 1itv_A 73 RQVWVYTGASVLGPRRLDKLG-LGADVAQVTGAL-RSGRGKMLLFSGR-------RLWRFDVKAQM 129 (195)
T ss_dssp TEEEEEETTEEEEEEEGGGGT-CCTTCCCCCEEE-ECSTTEEEEEETT-------EEEEEETTTTE
T ss_pred CEEEEEcCCccCCCEEeeecc-cCCCccceeEEE-EcCCCeEEEEeCC-------EEEEEeCCccc
Confidence 3478887542111 1111112 222 1223222 2346789999773 58999987754
No 308
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=67.58 E-value=20 Score=22.48 Aligned_cols=17 Identities=12% Similarity=0.102 Sum_probs=6.4
Q ss_pred HHHHHHhhhHHHHHHHH
Q 008611 531 SKEKLQSIQLKQDLTEA 547 (559)
Q Consensus 531 ~~~~~~~~~l~~~~~~~ 547 (559)
...+.+++.|+.+++.+
T Consensus 23 aaleselqalekklaal 39 (48)
T 1g6u_A 23 AALESELQALEKKLAAL 39 (48)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 309
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=67.10 E-value=9.1 Score=30.36 Aligned_cols=30 Identities=13% Similarity=0.155 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 008611 518 TLKAEKEELESSLSKEKLQSIQLKQDLTEA 547 (559)
Q Consensus 518 ~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~ 547 (559)
.+++++.+.+.++++.++++..|+..++.+
T Consensus 8 al~~eL~~~~~ei~~L~~ei~eLk~~ve~l 37 (106)
T 4e61_A 8 AIQAELTKSQETIGSLNEEIEQYKGTVSTL 37 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444333333
No 310
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=66.99 E-value=1.2e+02 Score=31.12 Aligned_cols=108 Identities=9% Similarity=0.096 Sum_probs=55.3
Q ss_pred CCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEEEECCCC
Q 008611 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETM 333 (559)
Q Consensus 255 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~ 333 (559)
++..++.|+.+ ..+..||.....-..+.. .... -.+++.. ++++++.|+.+ ..+.+||....
T Consensus 396 dg~~l~~~~~d------~~v~~~~~~~~~~~~~~~----~~~~-v~~~~~s~d~~~l~~~~~d------~~v~~w~~~~~ 458 (577)
T 2ymu_A 396 DGQTIASASDD------KTVKLWNRNGQLLQTLTG----HSSS-VWGVAFSPDDQTIASASDD------KTVKLWNRNGQ 458 (577)
T ss_dssp TSSCEEEEETT------SEEEEECTTCCEEEEEEC----CSSC-EEEEEECTTSSEEEEEETT------SEEEEEETTSC
T ss_pred CCCEEEEEeCC------CEEEEEeCCCCEEEEecC----CCCC-eEEEEECCCCCEEEEEcCC------CEEEEEECCCC
Confidence 56667777654 247777765443333321 1111 1112222 55666676653 34778887655
Q ss_pred ceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEec
Q 008611 334 TWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRP 389 (559)
Q Consensus 334 ~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~ 389 (559)
.-..+.. ....-.++++..++.+++.|+.+ ..+.+||.....-..+
T Consensus 459 ~~~~~~~-----~~~~v~~~~~spd~~~las~~~d-----~~i~iw~~~~~~~~~~ 504 (577)
T 2ymu_A 459 LLQTLTG-----HSSSVRGVAFSPDGQTIASASDD-----KTVKLWNRNGQLLQTL 504 (577)
T ss_dssp EEEEEEC-----CSSCEEEEEECTTSCEEEEEETT-----SEEEEEETTSCEEEEE
T ss_pred EEEEEcC-----CCCCEEEEEEcCCCCEEEEEeCC-----CEEEEEcCCCCEEEEE
Confidence 4444432 11222344555566677777643 3477888655443333
No 311
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=66.81 E-value=97 Score=30.79 Aligned_cols=19 Identities=26% Similarity=0.447 Sum_probs=14.7
Q ss_pred cccEEEEEcCCEEEEEcCC
Q 008611 349 SDHAAAVHAERYLLIFGGG 367 (559)
Q Consensus 349 ~~~~~~~~~~~~l~v~GG~ 367 (559)
..|++++..++.||.+|-.
T Consensus 338 ~~hs~alt~~G~v~~wG~n 356 (406)
T 4d9s_A 338 WRHTLAVTERNNVFAWGRG 356 (406)
T ss_dssp SSEEEEEETTSCEEEEECC
T ss_pred CCeEEEEeCCCCEEEecCC
Confidence 4578888878889999853
No 312
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=66.36 E-value=11 Score=28.29 Aligned_cols=49 Identities=10% Similarity=0.028 Sum_probs=29.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 510 ETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 510 ~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
.+.++.+.+|+..+.-.+..+++....+.+.+++++.++.+++.|.+.|
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl 58 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDL 58 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666666666666666666666666665555544
No 313
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=66.28 E-value=14 Score=30.28 Aligned_cols=17 Identities=41% Similarity=0.520 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008611 514 HLIATLKAEKEELESSL 530 (559)
Q Consensus 514 ~~~~~l~~e~~~~~~~l 530 (559)
..|..|+.+++.++..+
T Consensus 15 ~~Ie~Lkreie~lk~el 31 (120)
T 3i00_A 15 HLIERLYREISGLKAQL 31 (120)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444333
No 314
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=66.28 E-value=8.1 Score=26.28 Aligned_cols=37 Identities=11% Similarity=0.161 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 008611 515 LIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQN 551 (559)
Q Consensus 515 ~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 551 (559)
.+..|++...++-.+++..+.++.+.+|++.-+.+.|
T Consensus 12 q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LL 48 (58)
T 3a2a_A 12 QLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLL 48 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666665555555444433
No 315
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=66.13 E-value=14 Score=28.45 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhH
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDL 554 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 554 (559)
+..|..+..+++.+++...+++.++..+++...+.++.|
T Consensus 50 ~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 50 KHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556666666666666667777777777777766666554
No 316
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=66.10 E-value=20 Score=27.04 Aligned_cols=30 Identities=13% Similarity=0.243 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhhhhhHhh
Q 008611 527 ESSLSKEKLQSIQLKQDLTEAESQNTDLYK 556 (559)
Q Consensus 527 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~k 556 (559)
+.++..-+++++.|+.+++...+++.+|.+
T Consensus 50 ~~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 50 ENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345566666666677777666666666654
No 317
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1
Probab=65.46 E-value=77 Score=28.43 Aligned_cols=110 Identities=15% Similarity=0.151 Sum_probs=56.6
Q ss_pred eeEEeCCEEEEEeccCCCCCCcceEEEEECCCCeEEE--eccC-CCCCCCccceEEEEE--CCEEEEEcCcCCCCCCcCc
Q 008611 250 SLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWST--LKTY-GKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLND 324 (559)
Q Consensus 250 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~--~~~~-g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~ 324 (559)
+++..+|.+|+|=|. -+|+++.....+.. ++.. ..+|.. ... +... ++++|+|=|. .
T Consensus 28 Ai~~~~g~~y~Fkg~--------~~wr~~~~~~~~~p~~I~~~wp~Lp~~-iDA-a~~~~~~~~iyfFkG~--------~ 89 (207)
T 1pex_A 28 AITSLRGETMIFKDR--------FFWRLHPQQVDAELFLTKSFWPELPNR-IDA-AYEHPSHDLIFIFRGR--------K 89 (207)
T ss_dssp EEEEETTEEEEEETT--------EEEEECSSSSCCEEEEHHHHCTTSCSS-CCE-EEEETTTTEEEEEETT--------E
T ss_pred EEEeCCCcEEEEECC--------EEEEEeCCCcCCCceehhHhccCCCCC-ccE-EEEeccCCcEEEEccC--------E
Confidence 344568999999764 46777665444322 2111 123432 222 2222 5799999773 3
Q ss_pred eEEEECCCCce---EEecCCCCCCCc-ccccEEEEE-cCCEEEEEcCCCCCCCcCceEEEECCCCe
Q 008611 325 LHILDLETMTW---DEIDAVGVPPSP-RSDHAAAVH-AERYLLIFGGGSHAACFNDLHVLDLQTME 385 (559)
Q Consensus 325 ~~~yd~~t~~W---~~~~~~~~~p~~-r~~~~~~~~-~~~~l~v~GG~~~~~~~~dv~~~d~~~~~ 385 (559)
+|+|+-.+..- ..+...|-+..+ ... ++... .++++|+|-|. ..|+||..+.+
T Consensus 90 ~w~~~~~~~~~gyPk~I~~~GlP~~~~~ID-AA~~~~~~gk~yfFkG~-------~ywr~d~~~~~ 147 (207)
T 1pex_A 90 FWALNGYDILEGYPKKISELGLPKEVKKIS-AAVHFEDTGKTLLFSGN-------QVWRYDDTNHI 147 (207)
T ss_dssp EEEESTTCCCTTCSEESTTTTCCTTCCCCC-EEEECTTTSEEEEEETT-------EEEEEETTTTE
T ss_pred EEEEeCCeeccCCceeccccCCCCCCcccc-EEEEeCCCCEEEEEeCC-------EEEEEeCcCcc
Confidence 66775322111 122222211111 222 22222 34789999873 58999987654
No 318
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=65.46 E-value=4.9 Score=22.33 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=10.8
Q ss_pred HHhhhHHHHHHHHHhhhhhHh
Q 008611 535 LQSIQLKQDLTEAESQNTDLY 555 (559)
Q Consensus 535 ~~~~~l~~~~~~~~~~~~~~~ 555 (559)
+.+..|+++++.+|-+++.|+
T Consensus 7 qknarlkqeiaaleyeiaale 27 (28)
T 3ra3_B 7 QKNARLKQEIAALEYEIAALE 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhhHHHHHHHHHHHHHHHhc
Confidence 334445555555555555444
No 319
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=65.20 E-value=20 Score=26.23 Aligned_cols=43 Identities=14% Similarity=0.042 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhh
Q 008611 514 HLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYK 556 (559)
Q Consensus 514 ~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~k 556 (559)
..++.++..++.-+.+....+.++.++.+.++-+-..+.++.+
T Consensus 21 ~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq 63 (72)
T 3cve_A 21 GQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRD 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3344444444444444444444444444444444334444433
No 320
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=65.13 E-value=3.4 Score=40.25 Aligned_cols=35 Identities=17% Similarity=0.192 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q 008611 515 LIATLKAEKEELESSLSKEKLQSIQLKQDLTEAES 549 (559)
Q Consensus 515 ~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~ 549 (559)
.+.....+++.++..++..+.++++|++++.+++.
T Consensus 20 ~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~ 54 (323)
T 1lwu_C 20 IGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQ 54 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444443
No 321
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=64.93 E-value=14 Score=27.74 Aligned_cols=40 Identities=25% Similarity=0.189 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhh
Q 008611 514 HLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTD 553 (559)
Q Consensus 514 ~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~ 553 (559)
.++..-...+..++.+.+..+.+.++|+.+..++.++++.
T Consensus 40 ~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 40 SLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444555555555555555556666666666665543
No 322
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=64.88 E-value=18 Score=25.78 Aligned_cols=38 Identities=8% Similarity=0.152 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhh
Q 008611 520 KAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKV 557 (559)
Q Consensus 520 ~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ke 557 (559)
+....+++.+....+.++..|+.++..++.++..|..-
T Consensus 22 k~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 22 RELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666666666666555443
No 323
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=64.70 E-value=1.1e+02 Score=30.08 Aligned_cols=18 Identities=17% Similarity=0.279 Sum_probs=14.4
Q ss_pred cccEEEEEcCCEEEEEcC
Q 008611 349 SDHAAAVHAERYLLIFGG 366 (559)
Q Consensus 349 ~~~~~~~~~~~~l~v~GG 366 (559)
..|++++..++.||.+|-
T Consensus 274 ~~hs~alt~~G~v~~wG~ 291 (389)
T 3kci_A 274 SQFSVALTKSGAVYTWGK 291 (389)
T ss_dssp TTEEEEEETTSCEEEEEC
T ss_pred CCEEEEEeCCCeEEEEeC
Confidence 457788877888999985
No 324
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=64.56 E-value=95 Score=29.18 Aligned_cols=104 Identities=14% Similarity=0.166 Sum_probs=57.7
Q ss_pred CEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe--CCEEEEEeccCCCCCCcce
Q 008611 196 DKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHTKDPSEIIQ 273 (559)
Q Consensus 196 ~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~ 273 (559)
+.+++.|+.+ ..+.+||+.+.......... .....-..+.+ ++.+++.|+.+ ..
T Consensus 54 g~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~-------------~h~~~v~~~~~~~~~~~l~s~~~d------g~ 109 (368)
T 3mmy_A 54 GNFLIAGSWA-----NDVRCWEVQDSGQTIPKAQQ-------------MHTGPVLDVCWSDDGSKVFTASCD------KT 109 (368)
T ss_dssp SEEEEEEETT-----SEEEEEEECTTSCEEEEEEE-------------ECSSCEEEEEECTTSSEEEEEETT------SE
T ss_pred ceEEEEECCC-----CcEEEEEcCCCCceeEEEec-------------cccCCEEEEEECcCCCEEEEEcCC------Cc
Confidence 3788888743 35888888873333211111 01111122223 56677777654 36
Q ss_pred EEEEECCCCeEEEeccCCCCCCCccceEEEE---ECCEEEEEcCcCCCCCCcCceEEEECCCCc
Q 008611 274 VKVFDLQTCSWSTLKTYGKPPVSRGGQSVTL---VGTSLVIFGGEDAKRSLLNDLHILDLETMT 334 (559)
Q Consensus 274 v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~---~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~ 334 (559)
+.+||+.+.+...+.. ...+ -.++.. -++.+++.|+.+ ..+.+||+.+.+
T Consensus 110 v~iwd~~~~~~~~~~~---~~~~--v~~~~~~~~~~~~~l~~~~~d------g~i~vwd~~~~~ 162 (368)
T 3mmy_A 110 AKMWDLSSNQAIQIAQ---HDAP--VKTIHWIKAPNYSCVMTGSWD------KTLKFWDTRSSN 162 (368)
T ss_dssp EEEEETTTTEEEEEEE---CSSC--EEEEEEEECSSCEEEEEEETT------SEEEEECSSCSS
T ss_pred EEEEEcCCCCceeecc---ccCc--eEEEEEEeCCCCCEEEEccCC------CcEEEEECCCCc
Confidence 8899999988666532 1111 122222 245777777754 348889987654
No 325
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=64.47 E-value=14 Score=24.57 Aligned_cols=36 Identities=17% Similarity=0.266 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQN 551 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 551 (559)
++.|++|-.-+++.|+..-.++.+|+.+-.++..-+
T Consensus 12 Ve~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevl 47 (54)
T 1deb_A 12 VEALKMENSNLRQELEDNSNHLTKLETEASNMKEVL 47 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHH
Confidence 556666666666667776666666665555544443
No 326
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=64.27 E-value=20 Score=24.42 Aligned_cols=37 Identities=16% Similarity=0.113 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 522 EKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 522 e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
++..+++.....-.++++|+.+-.+.++++..|.+-|
T Consensus 12 q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LL 48 (58)
T 3a2a_A 12 QLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLL 48 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444555566666666666666665543
No 327
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=64.15 E-value=6.7 Score=29.78 Aligned_cols=39 Identities=13% Similarity=0.215 Sum_probs=31.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 008611 510 ETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAE 548 (559)
Q Consensus 510 ~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~ 548 (559)
...-+.|..|+++.+.++.++++...++.+|++++..++
T Consensus 43 ~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 43 DKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444567888888888888888888888888888887543
No 328
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=64.14 E-value=14 Score=27.16 Aligned_cols=41 Identities=22% Similarity=0.173 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 518 TLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 518 ~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
.|.....++....+..+.++..+++-.+..+.++.+++.||
T Consensus 34 DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 34 DLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555555555555566666666665
No 329
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=63.66 E-value=2.1e+02 Score=32.82 Aligned_cols=191 Identities=14% Similarity=0.080 Sum_probs=103.6
Q ss_pred CcccceeEEEECCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe---CCEEEE
Q 008611 184 KARYEHGAAVVQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW---ENKLLS 260 (559)
Q Consensus 184 ~~r~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~---~~~lyv 260 (559)
..-.++++....+.+ ++|.-........++.|+.....|-.-.... ...+.....|++++.. +...||
T Consensus 332 ~~q~GfSa~~t~d~~-~~GapG~~~w~G~v~~~~~~~~~~~~~~~~~--------~~~~~~sylGySVa~~~~~g~~~~v 402 (1095)
T 3k6s_A 332 MAQEGFSAVFTPDGP-VLGAVGSFTWSGGAFLYPPNMSPTFINMSQE--------NVDMRDSYLGYSTELALWKGVQSLV 402 (1095)
T ss_dssp BCCTTSSEECCTTCC-EEEESCSTTTTBEEEECCSSSCCEEECCCSS--------CCCCCSCCBTSSEECCCCSSSCEEE
T ss_pred cccccccceecCCcc-eEcccccCCccceeEEecCCCcceeeccccc--------cccccccccceeeEEeccCCceEEE
Confidence 344677777766666 7875322223345777776554443221110 1123345567777653 234567
Q ss_pred EeccCCCCCCcceEEEEECCCCeEEEec-cCCCCCCCccceEEEEEC------CEEEEEcCcCC-CCCCcCceEEEECCC
Q 008611 261 IAGHTKDPSEIIQVKVFDLQTCSWSTLK-TYGKPPVSRGGQSVTLVG------TSLVIFGGEDA-KRSLLNDLHILDLET 332 (559)
Q Consensus 261 ~GG~~~~~~~~~~v~~yd~~t~~W~~~~-~~g~~p~~r~~~~~~~~~------~~lyv~GG~~~-~~~~~~~~~~yd~~t 332 (559)
+|--.. .....+++|......|.... ..|.-.....+++++..+ ..|+++|.-.. .......+++|....
T Consensus 403 ~GAP~~--~~~G~V~i~~~~~~~~~~~~~~~g~~~gs~fG~sva~~DvngDG~~DllvvGAP~~~~~~~~G~Vyvy~~~~ 480 (1095)
T 3k6s_A 403 LGAPRY--QHTGKAVIFTQVSRQWRMKAEVTGTQIGSYFGASLCSVDVDSDGSTDLVLIGAPHYYEQTRGGQVSVCPLPR 480 (1095)
T ss_dssp EEETTG--GGTCEEEEEECCTTTCCEEEEECCSSTTSCTTSCEEEECSSSSSSCCEEEEECSSCCSSCCCBCEEEEECCS
T ss_pred EEcccc--cccceEEEEEecCCcceEEeecccCcccCcCCceEEEEEeCCCCCccEEEECCccccCcCCCCEEEEEEeCC
Confidence 764321 23457889988887887764 334444556677777642 25777774321 011235688886543
Q ss_pred --CceEEecCC-CCC--CCcccccEEEEEcC----C--EEEEEcCCCCCCCcCceEEEECCCC-ee
Q 008611 333 --MTWDEIDAV-GVP--PSPRSDHAAAVHAE----R--YLLIFGGGSHAACFNDLHVLDLQTM-EW 386 (559)
Q Consensus 333 --~~W~~~~~~-~~~--p~~r~~~~~~~~~~----~--~l~v~GG~~~~~~~~dv~~~d~~~~-~W 386 (559)
..|...... +.. +..|++++++.+.| + -| ++|.-........+|+|.-... .|
T Consensus 481 ~~~~~~~~~~l~g~~~~~~~~FG~sva~~gD~NgDG~~Dl-~VGAP~~~~~~G~vyi~~g~~~~g~ 545 (1095)
T 3k6s_A 481 GWRRWWCDAVLYGEQGHPWGRFGAALTVLGDVNGDKLTDV-VIGAPGEEENRGAVYLFHGVLGPSI 545 (1095)
T ss_dssp STTCCCSCSSCCCCCSCSSCCBTSCEEEEECSSSSSCCEE-EEECTTTTTSCCBEEEEEBCSSSCB
T ss_pred CCcceeeeEEeecccCCccccCccceEeecccCCCCCcCE-EEeCCcCCCCCCEEEEecCCCCCCc
Confidence 457643322 221 46788888887532 2 24 4443222233567899987665 45
No 330
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=63.63 E-value=17 Score=26.49 Aligned_cols=29 Identities=28% Similarity=0.264 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 008611 513 EHLIATLKAEKEELESSLSKEKLQSIQLK 541 (559)
Q Consensus 513 ~~~~~~l~~e~~~~~~~l~~~~~~~~~l~ 541 (559)
...+..+..|++++-.++...+++..+++
T Consensus 5 ~k~i~~l~~E~eel~~klk~~~ee~~~~~ 33 (71)
T 1s1c_X 5 TKDIEILRRENEELTEKMKKAEEEYKLEK 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577777888888888877777777655
No 331
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=63.63 E-value=88 Score=28.50 Aligned_cols=196 Identities=9% Similarity=0.005 Sum_probs=103.8
Q ss_pred eeEEEE--CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe--CCEEEEEecc
Q 008611 189 HGAAVV--QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGH 264 (559)
Q Consensus 189 ~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~ 264 (559)
+++++. ++.||+.-.. .+.+++||+.+..-..+.... .. .-++++.. ++.||+.-..
T Consensus 39 ~gi~~d~~~~~ly~~d~~-----~~~I~~~~~~g~~~~~~~~~~-------------~~-~p~~ia~d~~~~~lyv~d~~ 99 (267)
T 1npe_A 39 IGLAFDCVDKVVYWTDIS-----EPSIGRASLHGGEPTTIIRQD-------------LG-SPEGIALDHLGRTIFWTDSQ 99 (267)
T ss_dssp EEEEEETTTTEEEEEETT-----TTEEEEEESSSCCCEEEECTT-------------CC-CEEEEEEETTTTEEEEEETT
T ss_pred EEEEEecCCCEEEEEECC-----CCEEEEEecCCCCcEEEEECC-------------CC-CccEEEEEecCCeEEEEECC
Confidence 444554 5789988541 257999999876533332110 11 12333333 5789987543
Q ss_pred CCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCC
Q 008611 265 TKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVG 342 (559)
Q Consensus 265 ~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~ 342 (559)
.+.+.++++....-..+...+ ...| ..+++. ++.||+..... ..+.|++++++...-..+...
T Consensus 100 ------~~~I~~~~~~g~~~~~~~~~~-~~~P---~~i~vd~~~g~lyv~~~~~----~~~~I~~~~~dg~~~~~~~~~- 164 (267)
T 1npe_A 100 ------LDRIEVAKMDGTQRRVLFDTG-LVNP---RGIVTDPVRGNLYWTDWNR----DNPKIETSHMDGTNRRILAQD- 164 (267)
T ss_dssp ------TTEEEEEETTSCSCEEEECSS-CSSE---EEEEEETTTTEEEEEECCS----SSCEEEEEETTSCCCEEEECT-
T ss_pred ------CCEEEEEEcCCCCEEEEEECC-CCCc---cEEEEeeCCCEEEEEECCC----CCcEEEEEecCCCCcEEEEEC-
Confidence 357899998765433332211 1111 233443 57899875321 134688898875443333221
Q ss_pred CCCCcccccEEEEEc-CCEEEEEcCCCCCCCcCceEEEECCCCeeEeccCCCCCCCCccccEEEEECCceecceeeeeec
Q 008611 343 VPPSPRSDHAAAVHA-ERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSS 421 (559)
Q Consensus 343 ~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~~~~~~~p~~R~~hs~~~~~~~~~iG~s~~~~~ 421 (559)
....-..+++-. ++.||+.-.. .+.|++||+....-..+.. ....| +++++-+
T Consensus 165 ---~~~~P~gia~d~~~~~lyv~d~~-----~~~I~~~~~~g~~~~~~~~--~~~~P---~gi~~d~------------- 218 (267)
T 1npe_A 165 ---NLGLPNGLTFDAFSSQLCWVDAG-----THRAECLNPAQPGRRKVLE--GLQYP---FAVTSYG------------- 218 (267)
T ss_dssp ---TCSCEEEEEEETTTTEEEEEETT-----TTEEEEEETTEEEEEEEEE--CCCSE---EEEEEET-------------
T ss_pred ---CCCCCcEEEEcCCCCEEEEEECC-----CCEEEEEecCCCceEEEec--CCCCc---eEEEEeC-------------
Confidence 111223445543 4678887543 3579999987643322211 11112 2333332
Q ss_pred cCCCcEEEEEcCcCCCCcccEEEEeCCCcce
Q 008611 422 YSGEDVIVAFGGYNGRYNNEVHVLKPSHKST 452 (559)
Q Consensus 422 ~~~~~~l~v~GG~~~~~~~~v~~~d~~~~~~ 452 (559)
+.||+.-. ..+.|+++|+.+...
T Consensus 219 ----~~lyva~~----~~~~v~~~d~~~g~~ 241 (267)
T 1npe_A 219 ----KNLYYTDW----KTNSVIAMDLAISKE 241 (267)
T ss_dssp ----TEEEEEET----TTTEEEEEETTTTEE
T ss_pred ----CEEEEEEC----CCCeEEEEeCCCCCc
Confidence 37777543 235789999887643
No 332
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=63.49 E-value=66 Score=34.41 Aligned_cols=76 Identities=4% Similarity=-0.135 Sum_probs=41.4
Q ss_pred CCEEEEEccCCCC----cccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCCCCC
Q 008611 195 QDKMYIYGGNHNG----RYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSE 270 (559)
Q Consensus 195 ~~~lyv~GG~~~~----~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~ 270 (559)
+++.++++..... .....++++|+.+++-..+.... ....+..+....-+|+.++++..
T Consensus 71 Dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-----------~~~~~~~~~~~SPdG~~la~~~~------ 133 (723)
T 1xfd_A 71 DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPE-----------VSNAKLQYAGWGPKGQQLIFIFE------ 133 (723)
T ss_dssp TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTT-----------CCSCCCSBCCBCSSTTCEEEEET------
T ss_pred CCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCc-----------cccccccccEECCCCCEEEEEEC------
Confidence 5555555543322 23478999999998765553321 00111111222225555555543
Q ss_pred cceEEEEECCCCeEEEec
Q 008611 271 IIQVKVFDLQTCSWSTLK 288 (559)
Q Consensus 271 ~~~v~~yd~~t~~W~~~~ 288 (559)
..++++|+.+++...+.
T Consensus 134 -~~i~~~~~~~g~~~~~~ 150 (723)
T 1xfd_A 134 -NNIYYCAHVGKQAIRVV 150 (723)
T ss_dssp -TEEEEESSSSSCCEEEE
T ss_pred -CeEEEEECCCCceEEEe
Confidence 36888898887766664
No 333
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=63.49 E-value=8.8 Score=29.52 Aligned_cols=40 Identities=10% Similarity=0.040 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhH
Q 008611 515 LIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDL 554 (559)
Q Consensus 515 ~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 554 (559)
++..-...+..++.+.+..+.+..+|+.+.+++.+++++|
T Consensus 46 iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 46 ILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444445555555555555444
No 334
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=63.45 E-value=9.2 Score=27.18 Aligned_cols=38 Identities=16% Similarity=0.190 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Q 008611 513 EHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQ 550 (559)
Q Consensus 513 ~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~ 550 (559)
.+.+.+|+.+.+.++.+......++..|+.++..+.+.
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~ 58 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQK 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666666666666666666555443
No 335
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=63.42 E-value=88 Score=29.53 Aligned_cols=111 Identities=11% Similarity=-0.020 Sum_probs=59.6
Q ss_pred ceEEEEECCCCeEEEeccCCCC---------------CCCccceEEEEE--CCEEEEEcCcCCCCCCcCceEEEECCCCc
Q 008611 272 IQVKVFDLQTCSWSTLKTYGKP---------------PVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMT 334 (559)
Q Consensus 272 ~~v~~yd~~t~~W~~~~~~g~~---------------p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~ 334 (559)
..+++||+.+..++.+...... +....-++++.. ++.|||.... +.+.+||+.+..
T Consensus 40 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~-------~~i~~~d~~~g~ 112 (322)
T 2fp8_A 40 GRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY-------YHLSVVGSEGGH 112 (322)
T ss_dssp SEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT-------TEEEEECTTCEE
T ss_pred CeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC-------CCEEEEeCCCCE
Confidence 5689999988877765421100 000112344554 4689987432 238889988766
Q ss_pred eEEecCCCCCCCcccccEEEEEc-CCEEEEEcCCCC------------CCCcCceEEEECCCCeeEec
Q 008611 335 WDEIDAVGVPPSPRSDHAAAVHA-ERYLLIFGGGSH------------AACFNDLHVLDLQTMEWSRP 389 (559)
Q Consensus 335 W~~~~~~~~~p~~r~~~~~~~~~-~~~l~v~GG~~~------------~~~~~dv~~~d~~~~~W~~~ 389 (559)
.+.+...........-..+++.. ++.|||.-.... ......+++||+.+.....+
T Consensus 113 ~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~ 180 (322)
T 2fp8_A 113 ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLL 180 (322)
T ss_dssp CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEE
T ss_pred EEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEe
Confidence 65553210000111223455555 567888643211 01125699999988776544
No 336
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=63.31 E-value=8.7 Score=24.70 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 008611 516 IATLKAEKEELESSLSKEKLQSI 538 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~ 538 (559)
|..+-+|++..++++.+.|..+.
T Consensus 11 I~kVdrEI~Kte~kI~~lqkKlk 33 (42)
T 2l5g_B 11 MDRVDREITMVEQQISKLKKKQQ 33 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444333
No 337
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=63.17 E-value=17 Score=27.56 Aligned_cols=26 Identities=12% Similarity=0.095 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHH
Q 008611 521 AEKEELESSLSKEKLQSIQLKQDLTE 546 (559)
Q Consensus 521 ~e~~~~~~~l~~~~~~~~~l~~~~~~ 546 (559)
.++++++..+....-+++++.-++++
T Consensus 27 ~Ql~~Lq~Ev~~LRGqiE~~~~~l~q 52 (83)
T 2xdj_A 27 QQLSDNQSDIDSLRGQIQENQYQLNQ 52 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33333333333333333333333333
No 338
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=63.14 E-value=8 Score=41.21 Aligned_cols=18 Identities=17% Similarity=0.388 Sum_probs=6.9
Q ss_pred HHHHHHHHHhhhhhHhhh
Q 008611 540 LKQDLTEAESQNTDLYKV 557 (559)
Q Consensus 540 l~~~~~~~~~~~~~~~ke 557 (559)
++.++++.++++.++.+|
T Consensus 549 le~~~~~~~~~~~~l~~e 566 (597)
T 3oja_B 549 LEKQLDNKRAKQAELRQE 566 (597)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhHHHHHHHH
Confidence 333333333344444433
No 339
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=62.93 E-value=19 Score=25.65 Aligned_cols=30 Identities=13% Similarity=0.073 Sum_probs=13.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhhhhhHhhh
Q 008611 528 SSLSKEKLQSIQLKQDLTEAESQNTDLYKV 557 (559)
Q Consensus 528 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~ke 557 (559)
..+.+.+.++.+|+.+..++..+++.|..+
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443
No 340
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=62.92 E-value=14 Score=28.26 Aligned_cols=38 Identities=16% Similarity=0.234 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhh
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTD 553 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~ 553 (559)
+-.|+..|+.-..+-++.+.++++|+-+|..+.+.|++
T Consensus 48 V~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqd 85 (99)
T 3ni0_A 48 VVTLQESLEKKVSQALEQQARIKELENEVTKLNQELEN 85 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444334444444555566666666555533
No 341
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=62.91 E-value=12 Score=25.92 Aligned_cols=31 Identities=16% Similarity=0.124 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 008611 521 AEKEELESSLSKEKLQSIQLKQDLTEAESQN 551 (559)
Q Consensus 521 ~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 551 (559)
..+++++.++...+.++..|..++..+++.+
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555555555555555555444433
No 342
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=62.75 E-value=14 Score=29.09 Aligned_cols=42 Identities=10% Similarity=0.058 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhh
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKV 557 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ke 557 (559)
+.++.+.+.++++.+.+..++++.++.....+..+++.+..+
T Consensus 39 LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~ 80 (103)
T 4h22_A 39 LLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEA 80 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444555555555555554443
No 343
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=62.56 E-value=3.7 Score=41.18 Aligned_cols=68 Identities=16% Similarity=0.173 Sum_probs=48.6
Q ss_pred CCCChhhHHHHhhheeeeecCCCCCCCC----C------------CC--Chh--------hhhhHHHHhcCCCCCHHHHH
Q 008611 38 SKFSNDSALLLYALYQQATVGPCNVPKP----S------------SW--SPV--------EQSKWKSWQGLGNMATTEAM 91 (559)
Q Consensus 38 ~~~~~~~~l~ly~l~kqa~~g~~~~~~p----~------------~~--~~~--------~~~k~~aw~~~~~~s~~~a~ 91 (559)
...+.++.+.|-||--|+..||++...+ + ++ ++. .+.=...|+++.|||++|||
T Consensus 131 ~~~~~e~al~LAaL~~q~~~gD~~~~~~~~k~~~~~l~k~~~l~~flP~~~~~~~~~~~~~k~I~~~~k~~~g~s~~eAk 210 (375)
T 2al6_A 131 DQVDQEIALKLGCLEIRRSYGEMRGNALEKKSNYEVLEKDVGLRRFFPKSLLDSVKAKTLRKLIQQTFRQFANLNREESI 210 (375)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTSCTTGGGSHHHHHHHHHTTCGGGTSCHHHHHSSCHHHHHHHHHHHHHTTTTCCHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhhhccchhhcccCCHHHhhhcccHHHhCCHHHHHHhChHHHHHHHHHHHHHhhCCCHHHHH
Confidence 4578999999999999999999863211 0 10 010 11113668899999999999
Q ss_pred HHHHHHHHHhCCCcc
Q 008611 92 RLFVKILEEEDPGWY 106 (559)
Q Consensus 92 ~~yv~~~~~~~~~~~ 106 (559)
.+|++++.+ .|.|.
T Consensus 211 ~~yL~~~~~-l~~yG 224 (375)
T 2al6_A 211 LKFFEILSP-VYRFD 224 (375)
T ss_dssp HHHHHHHTT-TCCCS
T ss_pred HHHHHHHhh-cccCC
Confidence 999999988 46553
No 344
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=62.53 E-value=1.1e+02 Score=29.44 Aligned_cols=154 Identities=12% Similarity=0.122 Sum_probs=76.5
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCCCCCcceE
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQV 274 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v 274 (559)
++++++.|+. +.+.+++..++......... ............-++..++.++.+.. ....+
T Consensus 187 dg~~l~s~s~------~~~~~~~~~~~~~~~~~~~~-----------~~~~~v~~v~fspdg~~l~~~s~d~~--~~~~i 247 (365)
T 4h5i_A 187 DGKVVAYITG------SSLEVISTVTGSCIARKTDF-----------DKNWSLSKINFIADDTVLIAASLKKG--KGIVL 247 (365)
T ss_dssp TSSEEEEECS------SCEEEEETTTCCEEEEECCC-----------CTTEEEEEEEEEETTEEEEEEEESSS--CCEEE
T ss_pred CCceEEeccc------eeEEEEEeccCcceeeeecC-----------CCCCCEEEEEEcCCCCEEEEEecCCc--ceeEE
Confidence 4555555541 35777887777654432211 01111111122237788888776543 22356
Q ss_pred EEEECCCCeEEEeccCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccccE
Q 008611 275 KVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHA 352 (559)
Q Consensus 275 ~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~ 352 (559)
+.+|.....+...... ..........++.+ ++++++.|+.++ .|.+||..+.+-......+ ....-.+
T Consensus 248 ~~~~~~~~~~~~~~~~-~~~~~~~~V~~~~~Spdg~~lasgs~D~------~V~iwd~~~~~~~~~~~~g---H~~~V~~ 317 (365)
T 4h5i_A 248 TKISIKSGNTSVLRSK-QVTNRFKGITSMDVDMKGELAVLASNDN------SIALVKLKDLSMSKIFKQA---HSFAITE 317 (365)
T ss_dssp EEEEEETTEEEEEEEE-EEESSCSCEEEEEECTTSCEEEEEETTS------CEEEEETTTTEEEEEETTS---SSSCEEE
T ss_pred eecccccceecceeee-eecCCCCCeEeEEECCCCCceEEEcCCC------EEEEEECCCCcEEEEecCc---ccCCEEE
Confidence 6777766665443211 01111111222222 567888887643 4889998876533211111 1111223
Q ss_pred EEEEcCCEEEEEcCCCCCCCcCceEEEECC
Q 008611 353 AAVHAERYLLIFGGGSHAACFNDLHVLDLQ 382 (559)
Q Consensus 353 ~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~ 382 (559)
++...++.+++-|+.+ +.|.++|+.
T Consensus 318 v~fSpdg~~laS~S~D-----~tvrvw~ip 342 (365)
T 4h5i_A 318 VTISPDSTYVASVSAA-----NTIHIIKLP 342 (365)
T ss_dssp EEECTTSCEEEEEETT-----SEEEEEECC
T ss_pred EEECCCCCEEEEEeCC-----CeEEEEEcC
Confidence 4444567677777654 346777764
No 345
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=62.49 E-value=23 Score=26.46 Aligned_cols=19 Identities=26% Similarity=0.359 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008611 516 IATLKAEKEELESSLSKEK 534 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~ 534 (559)
-+.|++.++.++.+++..+
T Consensus 22 N~~Le~~v~~le~~Le~s~ 40 (79)
T 3cvf_A 22 NAELEHQLRAMERSLEEAR 40 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444
No 346
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=61.99 E-value=19 Score=28.37 Aligned_cols=10 Identities=20% Similarity=0.195 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 008611 518 TLKAEKEELE 527 (559)
Q Consensus 518 ~l~~e~~~~~ 527 (559)
.|++.++.++
T Consensus 48 sL~kKiq~lE 57 (101)
T 3u59_A 48 GLQKKLKGTE 57 (101)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 347
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=61.92 E-value=21 Score=28.31 Aligned_cols=30 Identities=17% Similarity=0.246 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 008611 517 ATLKAEKEELESSLSKEKLQSIQLKQDLTE 546 (559)
Q Consensus 517 ~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~ 546 (559)
..|+..+...|+.|...+.++.+|+++++.
T Consensus 27 ~~L~~~L~~AEeaL~~Kq~~idelk~ei~q 56 (110)
T 2v4h_A 27 EDLRQQLQQAEEALVAKQELIDKLKEEAEQ 56 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333343333333333333333
No 348
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=61.90 E-value=26 Score=26.84 Aligned_cols=35 Identities=26% Similarity=0.343 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 524 EELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 524 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
..+...|..++.+.++-+.++++++-++..|.++|
T Consensus 49 ~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~L 83 (99)
T 3ni0_A 49 VTLQESLEKKVSQALEQQARIKELENEVTKLNQEL 83 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444555555555555554
No 349
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=61.83 E-value=12 Score=26.77 Aligned_cols=49 Identities=14% Similarity=0.081 Sum_probs=38.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 510 ETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 510 ~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
.+..+.|..|..+..+++...++..+++.-++.+=.|++.-|..+|+++
T Consensus 8 veNgekI~~L~~~v~~~e~~Q~~ldq~Ld~Ie~QQ~ELe~~L~~~E~~v 56 (64)
T 3t97_C 8 IENGEKITSLHREVEKVKLDQKRLDQELDFILSQQKELEDLLSPLEESV 56 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678888888888888888888888888877788888877777765
No 350
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=61.76 E-value=4.8 Score=23.19 Aligned_cols=23 Identities=17% Similarity=0.118 Sum_probs=10.9
Q ss_pred HHHHHhhhHHHHHHHHHhhhhhH
Q 008611 532 KEKLQSIQLKQDLTEAESQNTDL 554 (559)
Q Consensus 532 ~~~~~~~~l~~~~~~~~~~~~~~ 554 (559)
....++.|++++++.+-..++..
T Consensus 3 ~IkkELtQIK~kvDsLLe~Le~~ 25 (28)
T 1txp_A 3 AIKKELTQIKQKVDSLLENLEKI 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444445555555554444433
No 351
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=60.63 E-value=27 Score=23.39 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 518 TLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 518 ~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
-.+.=+++++.+.+....+ +-.+++++-.|+.+||+.+
T Consensus 10 ~vq~LL~qmq~kFq~mS~~---I~~riDdM~~RIDdLE~si 47 (48)
T 3ci9_A 10 VVQTLLQQMQDKFQTISDQ---IIGRIDDMSSRIDDLEKNI 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHhhc
Confidence 3334445555555555444 5667999999999999875
No 352
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=60.56 E-value=25 Score=21.63 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHH
Q 008611 523 KEELESSLSKEKLQSIQLKQDLTEA 547 (559)
Q Consensus 523 ~~~~~~~l~~~~~~~~~l~~~~~~~ 547 (559)
-+++...+++.+.++..|+++..++
T Consensus 9 NekLhk~ie~KdeeIa~Lk~eN~eL 33 (37)
T 1t6f_A 9 NEKLHKEIEQKDNEIARLKKENKEL 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3444444555555555555444443
No 353
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=60.49 E-value=13 Score=22.80 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhH
Q 008611 518 TLKAEKEELESSLSKEKLQSIQL 540 (559)
Q Consensus 518 ~l~~e~~~~~~~l~~~~~~~~~l 540 (559)
.|.+++++.+.++...++++.+|
T Consensus 11 kLhk~ie~KdeeIa~Lk~eN~eL 33 (37)
T 1t6f_A 11 KLHKEIEQKDNEIARLKKENKEL 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHH
Confidence 34444555554444444444444
No 354
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=60.29 E-value=23 Score=26.75 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhh
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTD 553 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~ 553 (559)
..+|.+++.+++..+.....+..+....+.+.+.++.+
T Consensus 20 ~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd 57 (101)
T 1d7m_A 20 REQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDE 57 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777777777777777777777666644
No 355
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=60.13 E-value=17 Score=30.15 Aligned_cols=14 Identities=14% Similarity=0.173 Sum_probs=5.3
Q ss_pred cchHHHHHHHHHHH
Q 008611 510 ETTEHLIATLKAEK 523 (559)
Q Consensus 510 ~~~~~~~~~l~~e~ 523 (559)
.+....++.|+-++
T Consensus 41 ~elrr~iq~L~~el 54 (131)
T 3tnu_A 41 SELRRTMQNLEIEL 54 (131)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 356
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=59.78 E-value=1.1e+02 Score=28.19 Aligned_cols=136 Identities=14% Similarity=0.141 Sum_probs=68.0
Q ss_pred CcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe--CCEEEEEeccCCCCCCcceEEEEECCCCeEEEec
Q 008611 211 SDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLK 288 (559)
Q Consensus 211 ~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 288 (559)
+.+.++|+.+++....-... .....-.++.+ ++..++.|+.+. .+.++|+.+++-....
T Consensus 45 ~tV~iWd~~tg~~~~~~~~~-------------~~~~~V~~v~~~~~~~~l~sgs~Dg------~v~iw~~~~~~~~~~~ 105 (318)
T 4ggc_A 45 NSVYLWSASSGDILQLLQME-------------QPGEYISSVAWIKEGNYLAVGTSSA------EVQLWDVQQQKRLRNM 105 (318)
T ss_dssp TEEEEEETTTCCEEEEEECC-------------STTCCEEEEEECTTSSEEEEEETTS------EEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCCEEEEEEec-------------CCCCeEEEEEECCCCCEEEEEECCC------cEEEeecCCceeEEEe
Confidence 35788898888765543221 11111122333 677888887653 5888999888644332
Q ss_pred cCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCC
Q 008611 289 TYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGS 368 (559)
Q Consensus 289 ~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~ 368 (559)
. .... ...+....+.+++.|+.+ ..+..++..+.........+ ............++.+++.|+.+
T Consensus 106 ~---~h~~--~~~~~~~~~~~l~s~~~~------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~s~~~d 171 (318)
T 4ggc_A 106 T---SHSA--RVGSLSWNSYILSSGSRS------GHIHHHDVRVAEHHVATLSG---HSQEVCGLRWAPDGRHLASGGND 171 (318)
T ss_dssp E---CCSS--CEEEEEEETTEEEEEETT------SEEEEEETTSSSCEEEEEEC---CSSCEEEEEECTTSSEEEEEETT
T ss_pred c---Cccc--eEEEeecCCCEEEEEecC------CceEeeecCCCceeEEEEcC---ccCceEEEEEcCCCCEEEEEecC
Confidence 1 1111 122333445566666543 23455555544333222111 11222233333444466666643
Q ss_pred CCCCcCceEEEECCCC
Q 008611 369 HAACFNDLHVLDLQTM 384 (559)
Q Consensus 369 ~~~~~~dv~~~d~~~~ 384 (559)
..+.+||+.+.
T Consensus 172 -----~~i~iwd~~~~ 182 (318)
T 4ggc_A 172 -----NLVNVWPSAPG 182 (318)
T ss_dssp -----SCEEEEESSCB
T ss_pred -----cceeEEECCCC
Confidence 34778887654
No 357
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=59.65 E-value=9.1 Score=27.52 Aligned_cols=21 Identities=24% Similarity=0.257 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 008611 515 LIATLKAEKEELESSLSKEKL 535 (559)
Q Consensus 515 ~~~~l~~e~~~~~~~l~~~~~ 535 (559)
.+..|++++...++++...++
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e 39 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKE 39 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555444444433
No 358
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=59.64 E-value=12 Score=28.16 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 008611 519 LKAEKEELESSLSKEKLQSIQ 539 (559)
Q Consensus 519 l~~e~~~~~~~l~~~~~~~~~ 539 (559)
|.+++++++..+...++++.+
T Consensus 43 Lh~~ie~~~eEi~~Lk~en~~ 63 (83)
T 1wlq_A 43 LHKEIEQKDSEIARLRKENKD 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 359
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=59.53 E-value=1.1e+02 Score=28.30 Aligned_cols=63 Identities=17% Similarity=0.314 Sum_probs=34.8
Q ss_pred CEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe--C--CEEEEEeccCCCCCCc
Q 008611 196 DKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--E--NKLLSIAGHTKDPSEI 271 (559)
Q Consensus 196 ~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~--~~lyv~GG~~~~~~~~ 271 (559)
+.+++.|+.+ ..+.++|+.++.|..+.... .....-.++.+ + +.+++.|+.+.
T Consensus 67 g~~l~s~s~D-----~~v~iWd~~~~~~~~~~~~~-------------~h~~~v~~v~~~p~~~g~~l~s~s~d~----- 123 (297)
T 2pm7_B 67 GTILASCSYD-----GKVMIWKEENGRWSQIAVHA-------------VHSASVNSVQWAPHEYGPMLLVASSDG----- 123 (297)
T ss_dssp CSEEEEEETT-----TEEEEEEBSSSCBCCCEEEC-------------CCSSCEEEEEECCGGGCSEEEEEETTS-----
T ss_pred CCEEEEEcCC-----CEEEEEEcCCCceEEEEEee-------------cCCCceeEEEeCcCCCCcEEEEEECCC-----
Confidence 5677777743 35778898887776543321 01111222333 2 56677776643
Q ss_pred ceEEEEECCCC
Q 008611 272 IQVKVFDLQTC 282 (559)
Q Consensus 272 ~~v~~yd~~t~ 282 (559)
.+..||+.+.
T Consensus 124 -~v~~wd~~~~ 133 (297)
T 2pm7_B 124 -KVSVVEFKEN 133 (297)
T ss_dssp -EEEEEEBCSS
T ss_pred -cEEEEEecCC
Confidence 4777777654
No 360
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}
Probab=59.51 E-value=95 Score=27.51 Aligned_cols=112 Identities=12% Similarity=0.103 Sum_probs=56.7
Q ss_pred eeEEeCCEEEEEeccCCCCCCcceEEEEECCC---CeEEEeccCC-CCCCCccceEEEEECCEEEEEcCcCCCCCCcCce
Q 008611 250 SLIPWENKLLSIAGHTKDPSEIIQVKVFDLQT---CSWSTLKTYG-KPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDL 325 (559)
Q Consensus 250 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t---~~W~~~~~~g-~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~ 325 (559)
+++.+++.+|+|-|. .+|+++... +-=..+.... .+|.. ...+....++++|+|-| +.+
T Consensus 10 A~~~~~g~~~fFkg~--------~~w~~~~~~~~~gyP~~I~~~w~glP~~-iDAa~~~~~g~~yfFkg--------~~y 72 (196)
T 3c7x_A 10 TVAMLRGEMFVFKER--------WFWRVRNNQVMDGYPMPIGQFWRGLPAS-INTAYERKDGKFVFFKG--------DKH 72 (196)
T ss_dssp EEEEETTEEEEEETT--------EEEEEETTEECTTCSEEHHHHSTTCCSS-CCEEEECTTSCEEEEET--------TEE
T ss_pred EEEEcCCEEEEEECC--------EEEEEECCccCCCCceEhhHhccCCCCC-ccEEEEeCCCcEEEecC--------CEE
Confidence 344678999999874 466765321 1011222110 23432 22222223678999976 347
Q ss_pred EEEECCCCce---EEecCCC-CCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCe
Q 008611 326 HILDLETMTW---DEIDAVG-VPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTME 385 (559)
Q Consensus 326 ~~yd~~t~~W---~~~~~~~-~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~ 385 (559)
|+|+-.+... ..+...+ ..|......+.....++++|+|-|. ..|+||..+++
T Consensus 73 w~~~~~~~~~gyPk~I~~~~~glP~~~IDAA~~~~~~g~~yfFkG~-------~yw~yd~~~~~ 129 (196)
T 3c7x_A 73 WVFDEASLEPGYPKHIKELGRGLPTDKIDAALFWMPNGKTYFFRGN-------KYYRFNEELRA 129 (196)
T ss_dssp EEEETTEECTTCSEEGGGTCBSCCSSCCSEEEEETTTTEEEEEETT-------EEEEEETTTTE
T ss_pred EEEeCCcccCCCCeEhhhcCCCCCCCcccEEEEEccCCEEEEEECC-------EEEEEeCCccc
Confidence 8887542111 1222211 1232233322222236789999774 48999987754
No 361
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=58.80 E-value=25 Score=26.96 Aligned_cols=39 Identities=23% Similarity=0.255 Sum_probs=32.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 008611 510 ETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAE 548 (559)
Q Consensus 510 ~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~ 548 (559)
...-+.|..|+.+.+.++...+..+.+.++|+.++++++
T Consensus 48 ~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 48 KKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345567999999999988888899999999999998765
No 362
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=58.79 E-value=29 Score=23.94 Aligned_cols=33 Identities=6% Similarity=-0.047 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 526 LESSLSKEKLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 526 ~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
.+.-+++.+.++.+|+.+...+..++..|..++
T Consensus 20 Kk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 20 KKEYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455555555556666666666665555543
No 363
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=58.60 E-value=19 Score=27.49 Aligned_cols=28 Identities=7% Similarity=0.168 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhhhhhH
Q 008611 527 ESSLSKEKLQSIQLKQDLTEAESQNTDL 554 (559)
Q Consensus 527 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 554 (559)
+......++++.+|+.++++++.++..|
T Consensus 42 ~~r~~~Le~EN~~Lr~~v~~L~~E~~~L 69 (87)
T 1hjb_A 42 QHKVLELTAENERLQKKVEQLSRELSTL 69 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555555544444433
No 364
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=58.57 E-value=21 Score=27.41 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=13.3
Q ss_pred CcchHHHHHHHHHHHHHHHHHHH
Q 008611 509 PETTEHLIATLKAEKEELESSLS 531 (559)
Q Consensus 509 ~~~~~~~~~~l~~e~~~~~~~l~ 531 (559)
++..+..|..|..++..++.++.
T Consensus 24 le~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 24 LEQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455556666666666665553
No 365
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=58.25 E-value=8.3 Score=39.38 Aligned_cols=39 Identities=13% Similarity=0.112 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhh
Q 008611 518 TLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYK 556 (559)
Q Consensus 518 ~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~k 556 (559)
+|++.++-|+++++...+++..|+.-|++...+++.||.
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEv 152 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEV 152 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555444444555555555555555554443
No 366
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=58.00 E-value=9.9 Score=27.45 Aligned_cols=28 Identities=32% Similarity=0.427 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q 008611 522 EKEELESSLSKEKLQSIQLKQDLTEAES 549 (559)
Q Consensus 522 e~~~~~~~l~~~~~~~~~l~~~~~~~~~ 549 (559)
-+.++|..|+....++.+|+.++...+.
T Consensus 26 ~I~eLE~~L~~kd~eI~eLr~~LdK~qs 53 (67)
T 1zxa_A 26 RIKELEKRLSEKEEEIQELKRKLHKCQS 53 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555544433
No 367
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=57.90 E-value=13 Score=27.95 Aligned_cols=17 Identities=6% Similarity=0.288 Sum_probs=6.2
Q ss_pred HHhhhHHHHHHHHHhhh
Q 008611 535 LQSIQLKQDLTEAESQN 551 (559)
Q Consensus 535 ~~~~~l~~~~~~~~~~~ 551 (559)
+++.+|.+++..++.++
T Consensus 46 ~EN~~Lh~~ie~l~eEi 62 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEI 62 (83)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 368
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=57.83 E-value=19 Score=29.75 Aligned_cols=19 Identities=16% Similarity=0.302 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008611 516 IATLKAEKEELESSLSKEK 534 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~ 534 (559)
+.++...++.++..++..+
T Consensus 38 i~elrr~iq~L~~el~~l~ 56 (129)
T 3tnu_B 38 ISEMNRMIQRLRAEIDNVK 56 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 369
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=57.76 E-value=17 Score=24.16 Aligned_cols=34 Identities=18% Similarity=0.048 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhh
Q 008611 523 KEELESSLSKEKLQSIQLKQDLTEAESQNTDLYK 556 (559)
Q Consensus 523 ~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~k 556 (559)
+..+++.....-..+.+|+..-.++++++..|.+
T Consensus 6 l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~ 39 (48)
T 3vmx_A 6 ILRLKQINIQLATKIQHLEFSCSEKEQEIERLNK 39 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 3334444444444455555555555555555444
No 370
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=57.25 E-value=26 Score=29.46 Aligned_cols=44 Identities=11% Similarity=0.063 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhh
Q 008611 514 HLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKV 557 (559)
Q Consensus 514 ~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ke 557 (559)
+..+.|.++++++++++++.++....|+..++..+..+...+++
T Consensus 81 ~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~~~~ 124 (142)
T 3gp4_A 81 ARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIPAQEE 124 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777777777777777776666555544
No 371
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=57.25 E-value=28 Score=26.71 Aligned_cols=40 Identities=20% Similarity=0.121 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHh
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLY 555 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 555 (559)
...|..++..+..++.+.+.....|..+..+++.++.+++
T Consensus 44 ~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~ 83 (89)
T 3bas_A 44 NVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLK 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444444
No 372
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=57.12 E-value=23 Score=26.72 Aligned_cols=23 Identities=0% Similarity=-0.010 Sum_probs=11.0
Q ss_pred HHHhhhHHHHHHHHHhhhhhHhh
Q 008611 534 KLQSIQLKQDLTEAESQNTDLYK 556 (559)
Q Consensus 534 ~~~~~~l~~~~~~~~~~~~~~~k 556 (559)
..++.+.+++|++.+..+....+
T Consensus 50 ~~el~~h~~ei~~le~~i~rhk~ 72 (84)
T 1gmj_A 50 ENEISHHAKEIERLQKEIERHKQ 72 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555544433
No 373
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=57.11 E-value=9.8 Score=29.73 Aligned_cols=50 Identities=12% Similarity=0.131 Sum_probs=36.5
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHH----HHHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 509 PETTEHLIATLKAEKEELESSLSK----EKLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 509 ~~~~~~~~~~l~~e~~~~~~~l~~----~~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
..+.+..+++|.+.++.+.+.+.. ...+++..++-+.+++.++..+..++
T Consensus 38 ~~El~~~l~el~e~l~DL~~SI~i~e~~~~~EI~~Rk~~v~~l~~~i~~lk~~~ 91 (95)
T 2c5k_T 38 EEEIQDILKDVEETIVDLDRSIIVMKRDENEDVSGREAQVKNIKQQLDALKLRF 91 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777788888888888888888 44556666777777777777666654
No 374
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=57.10 E-value=22 Score=27.78 Aligned_cols=43 Identities=30% Similarity=0.361 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
.....-|.-++..+|.+.+.+..+-++.++++++.+..|.+||
T Consensus 52 ~Ar~lAEqAe~DArLAeAka~~~Ka~~~~~el~~~I~~LrqEl 94 (98)
T 4fm3_A 52 KARLLAEQAELDARLAESKVLTQKSKDQLGELDKSLKRLRKQL 94 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445556667777888888888888888888888888888887
No 375
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=57.02 E-value=23 Score=32.42 Aligned_cols=42 Identities=17% Similarity=0.247 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhh
Q 008611 515 LIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYK 556 (559)
Q Consensus 515 ~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~k 556 (559)
....+++++..++++|++.+.|..-+..++++.+++++++..
T Consensus 172 R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~ 213 (228)
T 3q0x_A 172 RLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLRE 213 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777777777888888877777777777777777766543
No 376
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=56.71 E-value=3.5 Score=26.07 Aligned_cols=28 Identities=11% Similarity=0.194 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 008611 524 EELESSLSKEKLQSIQLKQDLTEAESQN 551 (559)
Q Consensus 524 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 551 (559)
+.++.+++..+.+..+++.++..++..+
T Consensus 7 ~avKkKiq~lq~q~d~aee~~~~~~~~l 34 (37)
T 3azd_A 7 EAVRRKIRSLQEQNYHLENEVARLKKLV 34 (37)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444445444544444444443
No 377
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=56.66 E-value=11 Score=34.85 Aligned_cols=40 Identities=23% Similarity=0.137 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhH
Q 008611 515 LIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDL 554 (559)
Q Consensus 515 ~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 554 (559)
.+.+|++++.+++.+.+....++.++++|+..++.+++.|
T Consensus 55 ~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 55 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555566665555555555555555555555555555444
No 378
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=56.49 E-value=1.5e+02 Score=28.93 Aligned_cols=150 Identities=11% Similarity=0.009 Sum_probs=78.8
Q ss_pred cEEEEEcCC--CeEEEeeeccccCCCCCCCCCCCCCCccceeEEe---CCEEEEEeccCCCCCCcceEEEEECCCCeEEE
Q 008611 212 DMHILDLRS--WAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW---ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWST 286 (559)
Q Consensus 212 ~v~~yd~~t--~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~ 286 (559)
-+++++... .+|..+.+.. ....-++++.. .+.||+.+.... .-..+++.+-...+|+.
T Consensus 32 Gl~~~~~~~~g~~W~~~~~~~-------------~~~~v~~i~~dp~~~~~l~~g~~~g~---~g~gl~~s~D~G~tW~~ 95 (394)
T 3b7f_A 32 GAWFLASDPARRTWELRGPVF-------------LGHTIHHIVQDPREPERMLMAARTGH---LGPTVFRSDDGGGNWTE 95 (394)
T ss_dssp EEEEEEECTTSCSEEEEEEES-------------TTSEEEEEEECSSSTTCEEEEEEC-----CCEEEEEESSTTSCCEE
T ss_pred ceEEEECCCCCCCceECCccC-------------CCCceEEEEECCCCCCeEEEEecCCC---CCccEEEeCCCCCCceE
Confidence 377777655 6899874321 12223344433 467777654311 11257777777789999
Q ss_pred eccCCCCCCC--c-------cceEEEEE----CCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCC-------
Q 008611 287 LKTYGKPPVS--R-------GGQSVTLV----GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPS------- 346 (559)
Q Consensus 287 ~~~~g~~p~~--r-------~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~------- 346 (559)
+......+.. + .-.+++.. .+.||+.+. ...|++.+-...+|+.+......|.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~-------~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~ 168 (394)
T 3b7f_A 96 ATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTS-------PQGLFRSTDHGASWEPVAGFNDHPMRRAWTGG 168 (394)
T ss_dssp CSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEE-------TTEEEEESSTTSBCEECHHHHTCTTHHHHHCC
T ss_pred CCccccCCCcccccccccccceeEEEeCCCCCCCEEEEEec-------CCcEEEEcCCCCCeEECcCccCCccccccccc
Confidence 8632111211 1 11123332 356776542 2348888777889998753211111
Q ss_pred -------cccccEEEEEc--CCEEEEEcCCCCCCCcCceEEEECCCCeeEecc
Q 008611 347 -------PRSDHAAAVHA--ERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (559)
Q Consensus 347 -------~r~~~~~~~~~--~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~~ 390 (559)
....+++++.. .+.||+..+. ..+++.+-...+|..+.
T Consensus 169 ~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~------ggl~~s~DgG~tW~~~~ 215 (394)
T 3b7f_A 169 EQDGTPDGPKMHSILVDPRDPKHLYIGMSS------GGVFESTDAGTDWKPLN 215 (394)
T ss_dssp C----CCCCEEEEEEECTTCTTCEEEEEET------BEEEEESSTTSSCEECC
T ss_pred cccCCCCCCceeEEEECCCCCCEEEEEECC------CCEEEECCCCCCceECC
Confidence 11223444432 3457765321 24788877788999874
No 379
>3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 4hsd_A 3s18_A
Probab=55.84 E-value=13 Score=34.21 Aligned_cols=107 Identities=12% Similarity=0.080 Sum_probs=55.7
Q ss_pred EeCCEEEEEeccCCCCCCcceEEEEE--CCCCeE------EEeccCC-CCC----CCccceEEEE-ECCEEEEEcCcCCC
Q 008611 253 PWENKLLSIAGHTKDPSEIIQVKVFD--LQTCSW------STLKTYG-KPP----VSRGGQSVTL-VGTSLVIFGGEDAK 318 (559)
Q Consensus 253 ~~~~~lyv~GG~~~~~~~~~~v~~yd--~~t~~W------~~~~~~g-~~p----~~r~~~~~~~-~~~~lyv~GG~~~~ 318 (559)
..++.+|+|-|. .+|+|+ +.+... ..++..- .+| +.....+... .++++|+|-|
T Consensus 70 ~~~g~~~fFKg~--------~~Wr~~~~~~~~~~~~~~gP~~I~~~w~gLp~~~~p~~IDAA~~~~~~~k~yfFkG---- 137 (227)
T 3lp9_A 70 TENNEAFIFYEN--------FCALIDYAPHSKKDKIILGPKKIADVFPFFEGTVFESGIDAAYRSTRGKEVYLFKG---- 137 (227)
T ss_dssp CSTTEEEEEETT--------EEEEEECCTTTCCCEEEEEEEEHHHHSGGGTTSTTTTCCSEEEECSSTTEEEEEET----
T ss_pred CCCCEEEEEeCC--------EEEEEeCCCCccccccccCceEHhhhcCCCCCccCCCcccEEEEECCCCEEEEEEC----
Confidence 358999999874 588888 321111 1111110 122 1122222222 2579999977
Q ss_pred CCCcCceEEEECCCCceE-----EecCCCCCCC------cccccEEEEE-cCCEEEEEcCCCCCCCcCceEEEECCCC
Q 008611 319 RSLLNDLHILDLETMTWD-----EIDAVGVPPS------PRSDHAAAVH-AERYLLIFGGGSHAACFNDLHVLDLQTM 384 (559)
Q Consensus 319 ~~~~~~~~~yd~~t~~W~-----~~~~~~~~p~------~r~~~~~~~~-~~~~l~v~GG~~~~~~~~dv~~~d~~~~ 384 (559)
+..|+||..+++-. .+. .+ .|. +..-.++... .++++|+|=|. ..|+||..+.
T Consensus 138 ----~~yw~~d~~~~~~~~gyPk~i~-~g-~p~~~~~g~p~~iDAA~~~~~~g~~YfFkg~-------~Ywr~d~~~~ 202 (227)
T 3lp9_A 138 ----DQYARIDYGSNSMVNKEIKSIS-SG-YPCFRNTIFESGADAAFASHKTNEVYFFKDD-------HYARVKVTPX 202 (227)
T ss_dssp ----TEEEEEETTTTEESSSSCEEHH-HH-CGGGTTSGGGGCCSEEEECSSTTEEEEEETT-------EEEEEECCSS
T ss_pred ----CEEEEEeCCCccccCCCCeEHH-HC-CCCccccccCCCccEEEEcCCCceEEEEECC-------EEEEEECCcc
Confidence 35899997654321 111 01 121 1222233332 45789999873 4899998765
No 380
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=55.56 E-value=73 Score=31.75 Aligned_cols=73 Identities=15% Similarity=0.037 Sum_probs=44.1
Q ss_pred CCEEEEEc---CcCCCCCCcCceEEEECCCCceEEecCCCCCCCcccccEEEEEcCC--EEEEEcCCCCCCCcCceEEEE
Q 008611 306 GTSLVIFG---GEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVHAER--YLLIFGGGSHAACFNDLHVLD 380 (559)
Q Consensus 306 ~~~lyv~G---G~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~--~l~v~GG~~~~~~~~dv~~~d 380 (559)
++++|+.- +.......-+.++++|+.|.+-..-- +.+..-+++.+-.++ .||+.-+. .+++.+||
T Consensus 291 ~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i-----~vg~~~~~lavs~D~~~~ly~tn~~-----~~~VsViD 360 (386)
T 3sjl_D 291 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKF-----EMGHEIDSINVSQDEKPLLYALSTG-----DKTLYIHD 360 (386)
T ss_dssp TTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEE-----EEEEEECEEEECSSSSCEEEEEETT-----TTEEEEEE
T ss_pred CCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEE-----ECCCCcceEEECCCCCeEEEEEcCC-----CCeEEEEE
Confidence 56899963 22222223578999999988765432 222333345554443 56775442 36799999
Q ss_pred CCCCeeEe
Q 008611 381 LQTMEWSR 388 (559)
Q Consensus 381 ~~~~~W~~ 388 (559)
..+.+-..
T Consensus 361 ~~t~k~~~ 368 (386)
T 3sjl_D 361 AESGEELR 368 (386)
T ss_dssp TTTCCEEE
T ss_pred CCCCcEEE
Confidence 98876443
No 381
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=55.42 E-value=38 Score=21.61 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhh
Q 008611 515 LIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNT 552 (559)
Q Consensus 515 ~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~ 552 (559)
.|..|++.--++++.-+..++-+..|..+++.+|.+.+
T Consensus 11 kiarlkkdnlqlerdeqnlekiianlrdeiarleneva 48 (52)
T 3he5_B 11 KIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEVA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHh
Confidence 46777776666666655555555556666655554443
No 382
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=55.38 E-value=14 Score=28.47 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 008611 515 LIATLKAEKEELESSLSKEKLQS 537 (559)
Q Consensus 515 ~~~~l~~e~~~~~~~l~~~~~~~ 537 (559)
.+..|..+++.++.++.+.+.++
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555554
No 383
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=55.38 E-value=26 Score=28.12 Aligned_cols=46 Identities=28% Similarity=0.312 Sum_probs=34.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHh
Q 008611 510 ETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLY 555 (559)
Q Consensus 510 ~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 555 (559)
...++.+..|.+.++.++..+...+.+...++.++.+.+..+.++-
T Consensus 66 ~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 66 TTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667778888888888888888887778888887777776554
No 384
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=55.29 E-value=14 Score=34.66 Aligned_cols=47 Identities=17% Similarity=0.102 Sum_probs=23.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhh
Q 008611 510 ETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYK 556 (559)
Q Consensus 510 ~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~k 556 (559)
+..+..+..++..+..++..+...+.++.+++.++++.+.++...++
T Consensus 35 ~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~ 81 (256)
T 3na7_A 35 DKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQK 81 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555555555555555555544433
No 385
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=55.23 E-value=36 Score=21.40 Aligned_cols=44 Identities=27% Similarity=0.288 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 515 LIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 515 ~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
.+.+|..|...++...+.....+...+.-++=++++++.|.|.+
T Consensus 4 lvaqlenevaslenenetlkkknlhkkdliaylekeianlrkki 47 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 34555555555555555555555544444555555555555543
No 386
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=55.20 E-value=23 Score=25.22 Aligned_cols=34 Identities=9% Similarity=0.114 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhh
Q 008611 519 LKAEKEELESSLSKEKLQSIQLKQDLTEAESQNT 552 (559)
Q Consensus 519 l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~ 552 (559)
-+..+.+++.++...+.++..|..+++.+.+++.
T Consensus 28 K~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 28 KLQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345556666666666666666666666666553
No 387
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=54.73 E-value=50 Score=23.06 Aligned_cols=31 Identities=19% Similarity=0.194 Sum_probs=22.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 008611 510 ETTEHLIATLKAEKEELESSLSKEKLQSIQL 540 (559)
Q Consensus 510 ~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l 540 (559)
+..+..+..+..++.+++..++...++.+.|
T Consensus 3 ~~~q~~i~~le~el~~~r~e~~~q~~eYq~L 33 (59)
T 1gk6_A 3 KQLEDKVEELLSKNYHLENEVARLKKLVGDL 33 (59)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888888887777776666554
No 388
>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1
Probab=54.63 E-value=58 Score=29.56 Aligned_cols=106 Identities=24% Similarity=0.369 Sum_probs=54.1
Q ss_pred ECCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCEEEEEeccCCCCCCcce
Q 008611 194 VQDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENKLLSIAGHTKDPSEIIQ 273 (559)
Q Consensus 194 ~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~ 273 (559)
.++++|+|=| +.+|+++.....+....... .=+..| .... ++...++++|+|=|. .
T Consensus 27 ~~g~~yfFkg-------~~~Wr~~~~~~~~~p~~Is~-------~wpgLP-~~ID-AA~~~~~~~yfFkG~--------~ 82 (219)
T 1hxn_A 27 NHGATYVFSG-------SHYWRLDTNRDGWHSWPIAH-------QWPQGP-STVD-AAFSWEDKLYLIQDT--------K 82 (219)
T ss_dssp TTSCEEEEET-------TEEEESSSSSCTTCCEEGGG-------TCTTSC-SSCS-EEEEETTEEEEEETT--------E
T ss_pred CCCcEEEEeC-------CEEEEEcCCCCCCCceEhhh-------hccCCC-CCcc-EEEEECCcEEEecCC--------E
Confidence 3788999977 45677765432221111100 001122 2223 333458999999763 5
Q ss_pred EEEEECCCC-eE-----EEecc-CCCCCCC--ccceEEEE-E--CCEEEEEcCcCCCCCCcCceEEEECCC
Q 008611 274 VKVFDLQTC-SW-----STLKT-YGKPPVS--RGGQSVTL-V--GTSLVIFGGEDAKRSLLNDLHILDLET 332 (559)
Q Consensus 274 v~~yd~~t~-~W-----~~~~~-~g~~p~~--r~~~~~~~-~--~~~lyv~GG~~~~~~~~~~~~~yd~~t 332 (559)
+|+|+..++ +- ..+.. .| +|.. ....-++. . ++++|+|-| +..|+||..+
T Consensus 83 yw~~~~~~~~~~~~gyPk~i~~~~G-~p~~~~~~~IDAA~~~~~~gk~yfFkG--------~~ywr~d~~~ 144 (219)
T 1hxn_A 83 VYVFLTKGGYTLVNGYPKRLEKELG-SPPVISLEAVDAAFVCPGSSRLHIMAG--------RRLWWLDLKS 144 (219)
T ss_dssp EEEEECSSSCEECTTCCEEHHHHHC-CCSSCCCSCCCEEECCTTCCEEEEEET--------TEEEEEEGGG
T ss_pred EEEEeCCCCceecCCCCeehhhccC-CCCcccccccceeEEecCCCEEEEEeC--------CEEEEEeCCC
Confidence 889986532 11 12221 12 3332 11222333 2 468999987 3478998654
No 389
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=54.63 E-value=13 Score=28.03 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=27.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 008611 510 ETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTE 546 (559)
Q Consensus 510 ~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~ 546 (559)
...-+.|..|+.+.++++...+..+.+.++|++++++
T Consensus 43 ~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 43 TKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445568888888888888888888888888877764
No 390
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=54.49 E-value=32 Score=28.03 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 008611 512 TEHLIATLKAEKEELESSLSKEKLQ 536 (559)
Q Consensus 512 ~~~~~~~l~~e~~~~~~~l~~~~~~ 536 (559)
.+..+.+|+..+.+++..|.....+
T Consensus 38 ~q~~v~ql~~~i~~Le~eL~e~r~~ 62 (120)
T 3i00_A 38 SQRVVLQLKGHVSELEADLAEQQHL 62 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555554443
No 391
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=54.28 E-value=25 Score=29.86 Aligned_cols=42 Identities=14% Similarity=0.255 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhh
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKV 557 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ke 557 (559)
+.-+.+.++.++.+++..+.++..++.++...+..++++.+.
T Consensus 100 ~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~ 141 (151)
T 2zdi_C 100 ISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQK 141 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444554455554444444443
No 392
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=54.26 E-value=40 Score=23.44 Aligned_cols=41 Identities=10% Similarity=0.049 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhh
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYK 556 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~k 556 (559)
+.++.......+..++..+..+.++..++......+.++..
T Consensus 14 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~ 54 (60)
T 3htk_A 14 VEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKN 54 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33443444444444444444444444444444444444433
No 393
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=54.19 E-value=27 Score=28.00 Aligned_cols=37 Identities=11% Similarity=0.096 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 008611 515 LIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQN 551 (559)
Q Consensus 515 ~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 551 (559)
.+..|++++.++....+..+..+.+|++..+++|+..
T Consensus 36 ~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~ 72 (111)
T 2v66_B 36 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAK 72 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence 3666777777666666666666666666666666543
No 394
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=54.18 E-value=1.6e+02 Score=28.54 Aligned_cols=146 Identities=14% Similarity=0.088 Sum_probs=0.0
Q ss_pred CCEEEEEeccC-CCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEE---CCEEEEEcCcCCCCCCcCceEEEEC
Q 008611 255 ENKLLSIAGHT-KDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV---GTSLVIFGGEDAKRSLLNDLHILDL 330 (559)
Q Consensus 255 ~~~lyv~GG~~-~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~yd~ 330 (559)
+|.+||.+... .. |+++++....=.......+.+..+.+.+-.++ ++.|++..+ .+. +++||+
T Consensus 147 ~GnaYVt~s~~~~~------I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~------L~~fD~ 213 (334)
T 2p9w_A 147 DGNSYVAFALGMPA------IARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRA------LTAFDV 213 (334)
T ss_dssp TSCEEEEEEESSCE------EEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSS------EEEEEC
T ss_pred CCCEEEeCCCCCCe------EEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCe------EEEEcC
Q ss_pred CCCceEEecCC--CCCCCcccccE-EEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEeccCCCCCCCC--ccccEEE
Q 008611 331 ETMTWDEIDAV--GVPPSPRSDHA-AAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQGEIPTP--RAGHAGV 405 (559)
Q Consensus 331 ~t~~W~~~~~~--~~~p~~r~~~~-~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~~~~~~~p~~--R~~hs~~ 405 (559)
.+-....++.. |........-. +..-.++.++++.-. .+..+.+--..+ |......+..|.+ -.+.+.+
T Consensus 214 ~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~-----~~~~~~l~S~Dg-W~sa~~~g~~~~~~~~~g~tt~ 287 (334)
T 2p9w_A 214 SKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGAR-----APYAISFRSWDN-WKSANIKKTKRSELQNSGFTAV 287 (334)
T ss_dssp SSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEE-----TTEEEEEECSST-TSEEEEEEEECGGGGSSCEEEE
T ss_pred CCCcceeecccccCCcccccCcccccccccCCEEEEEEcC-----CCCEEEEECCCC-cceeEEeeeecCccccCceeEE
Q ss_pred EE---CCceecceeeeeeccCCCcEEEEEcCc
Q 008611 406 TI---GENWFLGLSLVVSSYSGEDVIVAFGGY 434 (559)
Q Consensus 406 ~~---~~~~~iG~s~~~~~~~~~~~l~v~GG~ 434 (559)
++ .. +++||++.++
T Consensus 288 t~~~~~~---------------~~~iYvv~~~ 304 (334)
T 2p9w_A 288 ADYYQGS---------------EQGLYAVSAF 304 (334)
T ss_dssp EEEEETT---------------EEEEEEEECC
T ss_pred EEecccc---------------CCeEEEEeee
No 395
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=54.02 E-value=26 Score=26.19 Aligned_cols=40 Identities=5% Similarity=0.170 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 519 LKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 519 l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
.++..+.......+.+....+|+++...++.+++.|++|+
T Consensus 27 akrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~ 66 (78)
T 1gu4_A 27 VRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSREL 66 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555666666666666666666666654
No 396
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=53.76 E-value=7.1 Score=40.49 Aligned_cols=42 Identities=7% Similarity=0.011 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhh
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKV 557 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ke 557 (559)
.++++.+++..++..+..++++++++++.+..+..+.++.++
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (487)
T 3oja_A 423 YVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLA 464 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhh
Confidence 444444444444555555555555555444444444444433
No 397
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=53.53 E-value=33 Score=27.00 Aligned_cols=49 Identities=10% Similarity=0.190 Sum_probs=32.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhh--------HHHHHHHHHhhhhhHhhhhC
Q 008611 511 TTEHLIATLKAEKEELESSLSKEKLQSIQ--------LKQDLTEAESQNTDLYKVIA 559 (559)
Q Consensus 511 ~~~~~~~~l~~e~~~~~~~l~~~~~~~~~--------l~~~~~~~~~~~~~~~kelq 559 (559)
+....+.+.+..+++.++-|+++..+... +..++.+.++.++.+.+||+
T Consensus 46 ~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~s~R~~~~~klr~Yk~dL~~lk~elk 102 (102)
T 2qyw_A 46 EKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRKDLAKLHREVR 102 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 34445666777777777666666555433 55677777888888888774
No 398
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=53.32 E-value=23 Score=26.46 Aligned_cols=48 Identities=15% Similarity=0.115 Sum_probs=28.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhh
Q 008611 510 ETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKV 557 (559)
Q Consensus 510 ~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ke 557 (559)
.+.+..++.++..++.-+.+....+.++.++.+.++-+-..|.++.+.
T Consensus 23 ~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqg 70 (79)
T 3cvf_A 23 AELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREG 70 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 345556777777777766666666666666665555554444444443
No 399
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=53.31 E-value=32 Score=28.43 Aligned_cols=43 Identities=23% Similarity=0.311 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhh
Q 008611 514 HLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYK 556 (559)
Q Consensus 514 ~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~k 556 (559)
+-+.-+++.++.++.+++..++++..++.++...+..++++.+
T Consensus 88 eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~ 130 (133)
T 1fxk_C 88 DAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLA 130 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3355555555666666666666666666666666666655544
No 400
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=53.11 E-value=1.5e+02 Score=27.79 Aligned_cols=105 Identities=12% Similarity=0.161 Sum_probs=53.6
Q ss_pred CCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCcCceEEEECCC
Q 008611 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLET 332 (559)
Q Consensus 255 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t 332 (559)
++.+++.|+.+. .+.++|+.+++-...-. + . .....++.+ ++.+++.|+.++ .+.+||+..
T Consensus 76 dg~~l~s~s~D~------~v~~wd~~~~~~~~~~~-~--h--~~~v~~~~~~~~~~~l~s~s~D~------~i~vwd~~~ 138 (319)
T 3frx_A 76 DGAYALSASWDK------TLRLWDVATGETYQRFV-G--H--KSDVMSVDIDKKASMIISGSRDK------TIKVWTIKG 138 (319)
T ss_dssp TSSEEEEEETTS------EEEEEETTTTEEEEEEE-C--C--SSCEEEEEECTTSCEEEEEETTS------CEEEEETTS
T ss_pred CCCEEEEEeCCC------EEEEEECCCCCeeEEEc-c--C--CCcEEEEEEcCCCCEEEEEeCCC------eEEEEECCC
Confidence 567777777643 58899998876432210 1 0 111112222 456777777643 367788765
Q ss_pred CceEEecCCCCCCCcccccEEEEEc------CCEEEEEcCCCCCCCcCceEEEECCCCee
Q 008611 333 MTWDEIDAVGVPPSPRSDHAAAVHA------ERYLLIFGGGSHAACFNDLHVLDLQTMEW 386 (559)
Q Consensus 333 ~~W~~~~~~~~~p~~r~~~~~~~~~------~~~l~v~GG~~~~~~~~dv~~~d~~~~~W 386 (559)
..-..+... ...-.++.... ++.+++.||.+ ..+.+||+.+..-
T Consensus 139 ~~~~~~~~h-----~~~v~~~~~~~~~~~~~~~~~l~s~~~d-----~~i~~wd~~~~~~ 188 (319)
T 3frx_A 139 QCLATLLGH-----NDWVSQVRVVPNEKADDDSVTIISAGND-----KMVKAWNLNQFQI 188 (319)
T ss_dssp CEEEEECCC-----SSCEEEEEECCC------CCEEEEEETT-----SCEEEEETTTTEE
T ss_pred CeEEEEecc-----CCcEEEEEEccCCCCCCCccEEEEEeCC-----CEEEEEECCcchh
Confidence 443333211 11111222221 22356666643 3478888877654
No 401
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=52.85 E-value=11 Score=34.88 Aligned_cols=35 Identities=23% Similarity=0.282 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 524 EELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 524 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
.+++.+++..++++++|...+.++++++..|..||
T Consensus 57 ~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeEl 91 (251)
T 3m9b_A 57 HQLEARIDSLAARNSKLMETLKEARQQLLALREEV 91 (251)
T ss_dssp HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444445555555555554444443
No 402
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=52.81 E-value=19 Score=20.91 Aligned_cols=19 Identities=16% Similarity=0.216 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 008611 519 LKAEKEELESSLSKEKLQS 537 (559)
Q Consensus 519 l~~e~~~~~~~l~~~~~~~ 537 (559)
|.+++..++.-.++.|+.+
T Consensus 4 lee~~r~l~~ivq~lq~r~ 22 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERL 22 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 403
>2lq4_p Lysophosphatidic acid receptor 1; GPCR, G protein-coupled receptor, de novo protein; NMR {Artificial gene}
Probab=52.65 E-value=1.7 Score=30.25 Aligned_cols=18 Identities=22% Similarity=0.222 Sum_probs=9.8
Q ss_pred HHHHHHHhhhhhHhhhhC
Q 008611 542 QDLTEAESQNTDLYKVIA 559 (559)
Q Consensus 542 ~~~~~~~~~~~~~~kelq 559 (559)
=+++.+|++++.++||||
T Consensus 13 welqalekelaqlekelq 30 (80)
T 2lq4_p 13 WELQALEKELAQLEKELQ 30 (80)
T ss_dssp TTTHHHHTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555666654
No 404
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=52.53 E-value=29 Score=25.42 Aligned_cols=39 Identities=18% Similarity=0.163 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 008611 513 EHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQN 551 (559)
Q Consensus 513 ~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 551 (559)
+..-+.|++.++.++.+++..+.+-..++.++..+.+.+
T Consensus 13 E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~L 51 (72)
T 3cve_A 13 EIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEIL 51 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555555555555555555555555554444
No 405
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=52.46 E-value=12 Score=27.85 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=28.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHh
Q 008611 510 ETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLY 555 (559)
Q Consensus 510 ~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 555 (559)
...+..++.|++-.+++...-+..+.-+.+|+++-+++++-++.+.
T Consensus 21 ~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk 66 (78)
T 3iv1_A 21 DRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLK 66 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666666666666666666667777766666664443
No 406
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=52.41 E-value=14 Score=24.12 Aligned_cols=11 Identities=18% Similarity=0.274 Sum_probs=4.0
Q ss_pred HHHHHhhhhhH
Q 008611 544 LTEAESQNTDL 554 (559)
Q Consensus 544 ~~~~~~~~~~~ 554 (559)
+..+|.+++.|
T Consensus 25 i~~LE~KLd~L 35 (43)
T 2pnv_A 25 IVTLETKLETL 35 (43)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 407
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=51.81 E-value=1.4e+02 Score=27.09 Aligned_cols=156 Identities=9% Similarity=0.029 Sum_probs=84.6
Q ss_pred eeEEEE--CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe--CCEEEEEecc
Q 008611 189 HGAAVV--QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGH 264 (559)
Q Consensus 189 ~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~ 264 (559)
+.+++. ++.||+.-.. .+.++++|+....-..+.... ..+ -..++.. +++||+....
T Consensus 82 ~~ia~d~~~~~lyv~d~~-----~~~I~~~~~~g~~~~~~~~~~-------------~~~-P~~i~vd~~~g~lyv~~~~ 142 (267)
T 1npe_A 82 EGIALDHLGRTIFWTDSQ-----LDRIEVAKMDGTQRRVLFDTG-------------LVN-PRGIVTDPVRGNLYWTDWN 142 (267)
T ss_dssp EEEEEETTTTEEEEEETT-----TTEEEEEETTSCSCEEEECSS-------------CSS-EEEEEEETTTTEEEEEECC
T ss_pred cEEEEEecCCeEEEEECC-----CCEEEEEEcCCCCEEEEEECC-------------CCC-ccEEEEeeCCCEEEEEECC
Confidence 344544 5789988542 257889998764433332110 011 1223332 6889987532
Q ss_pred CCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCC
Q 008611 265 TKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVG 342 (559)
Q Consensus 265 ~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~ 342 (559)
. ....++++++....-..+... .. ..-..++.- ++.||+.-.. .+.|++||+.+..-..+...
T Consensus 143 ~----~~~~I~~~~~dg~~~~~~~~~-~~---~~P~gia~d~~~~~lyv~d~~------~~~I~~~~~~g~~~~~~~~~- 207 (267)
T 1npe_A 143 R----DNPKIETSHMDGTNRRILAQD-NL---GLPNGLTFDAFSSQLCWVDAG------THRAECLNPAQPGRRKVLEG- 207 (267)
T ss_dssp S----SSCEEEEEETTSCCCEEEECT-TC---SCEEEEEEETTTTEEEEEETT------TTEEEEEETTEEEEEEEEEC-
T ss_pred C----CCcEEEEEecCCCCcEEEEEC-CC---CCCcEEEEcCCCCEEEEEECC------CCEEEEEecCCCceEEEecC-
Confidence 1 235788888875443333211 11 122334443 4689887532 35799999876433222211
Q ss_pred CCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEe
Q 008611 343 VPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSR 388 (559)
Q Consensus 343 ~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~ 388 (559)
...| +++++ .++.||+.... .+.|+++|+.+.+...
T Consensus 208 -~~~P---~gi~~-d~~~lyva~~~-----~~~v~~~d~~~g~~~~ 243 (267)
T 1npe_A 208 -LQYP---FAVTS-YGKNLYYTDWK-----TNSVIAMDLAISKEMD 243 (267)
T ss_dssp -CCSE---EEEEE-ETTEEEEEETT-----TTEEEEEETTTTEEEE
T ss_pred -CCCc---eEEEE-eCCEEEEEECC-----CCeEEEEeCCCCCceE
Confidence 1222 34444 46779887543 2468999998876543
No 408
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=51.46 E-value=1.6e+02 Score=27.63 Aligned_cols=145 Identities=14% Similarity=0.165 Sum_probs=77.1
Q ss_pred cccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe--CCEEEEEeccCCCCCCcceEEEEECCCCeEE
Q 008611 208 RYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWS 285 (559)
Q Consensus 208 ~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~ 285 (559)
.....++++|+.++.-..+.. .....+ +|+.+++...... .....++.+|+.+++..
T Consensus 40 ~~~~~l~~~d~~~~~~~~l~~--------------------~~~~~~SpDg~~la~~~~~~~-~~~~~l~~~~~~~g~~~ 98 (347)
T 2gop_A 40 KYENTIVIENLKNNARRFIEN--------------------ATMPRISPDGKKIAFMRANEE-KKVSEIWVADLETLSSK 98 (347)
T ss_dssp EEEEEEEEEETTTCCEEEEES--------------------CEEEEECTTSSEEEEEEEETT-TTEEEEEEEETTTTEEE
T ss_pred CccceEEEEeCCCCceEEccc--------------------CCCeEECCCCCEEEEEEeccC-CCcceEEEEECCCCceE
Confidence 456789999998887655410 111222 4544444433221 23457999999998877
Q ss_pred EeccCCCCCCCccceEEEEE-CCEEEEEcCcC------------------CCC---CCcCceEEEECCCCce-EEecCCC
Q 008611 286 TLKTYGKPPVSRGGQSVTLV-GTSLVIFGGED------------------AKR---SLLNDLHILDLETMTW-DEIDAVG 342 (559)
Q Consensus 286 ~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~------------------~~~---~~~~~~~~yd~~t~~W-~~~~~~~ 342 (559)
.+... +. ....... +++.++|+... +.+ .....++++|+.+... ..+..
T Consensus 99 ~l~~~---~~---~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-- 170 (347)
T 2gop_A 99 KILEA---KN---IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-- 170 (347)
T ss_dssp EEEEE---SE---EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE--
T ss_pred EEEcC---CC---ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC--
Confidence 76531 21 2222222 44444443321 000 0135699999998877 55542
Q ss_pred CCCCcccccEEEEEcCCEEEEEcCCCCCC---C-cCceEEEECCCCeeEec
Q 008611 343 VPPSPRSDHAAAVHAERYLLIFGGGSHAA---C-FNDLHVLDLQTMEWSRP 389 (559)
Q Consensus 343 ~~p~~r~~~~~~~~~~~~l~v~GG~~~~~---~-~~dv~~~d~~~~~W~~~ 389 (559)
+ .....+...++ +++.+...... . ..++|.+| +..+..+
T Consensus 171 ----~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l 213 (347)
T 2gop_A 171 ----P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKM 213 (347)
T ss_dssp ----E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEE
T ss_pred ----C-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceEEe
Confidence 1 23344555566 55555332211 2 45788888 6666665
No 409
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=51.13 E-value=28 Score=30.68 Aligned_cols=42 Identities=12% Similarity=0.090 Sum_probs=35.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhh
Q 008611 511 TTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNT 552 (559)
Q Consensus 511 ~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~ 552 (559)
-.++++.-+......++.+.+..+++++.|++|.++..+|++
T Consensus 142 ~i~elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~qlE 183 (184)
T 3w03_C 142 VIRELICYCLDTIAENQAKNEHLQKENERLLRDWNDVQGRFE 183 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345567788888899999999999999999999998888765
No 410
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=51.12 E-value=29 Score=27.49 Aligned_cols=16 Identities=31% Similarity=0.515 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 008611 516 IATLKAEKEELESSLS 531 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~ 531 (559)
+.+|+.++.+++..++
T Consensus 20 i~~L~~ei~eLk~~ve 35 (106)
T 4e61_A 20 IGSLNEEIEQYKGTVS 35 (106)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444443333333
No 411
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=50.97 E-value=9.1 Score=43.92 Aligned_cols=9 Identities=11% Similarity=0.220 Sum_probs=4.0
Q ss_pred CCCHHHHHH
Q 008611 84 NMATTEAMR 92 (559)
Q Consensus 84 ~~s~~~a~~ 92 (559)
|++.+|-+.
T Consensus 316 g~~~~e~~~ 324 (1080)
T 2dfs_A 316 GISDSYQMG 324 (1080)
T ss_dssp TCCHHHHHH
T ss_pred CCCHHHHHH
Confidence 445444433
No 412
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=50.60 E-value=31 Score=23.48 Aligned_cols=40 Identities=28% Similarity=0.357 Sum_probs=32.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Q 008611 511 TTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQ 550 (559)
Q Consensus 511 ~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~ 550 (559)
..+..++.|++++..+|..|...+.+...+.++++..-..
T Consensus 9 fAERsV~KLek~ID~LEdeL~~eKek~~~i~~eLD~tl~e 48 (52)
T 2z5i_A 9 HLENEVARLKKLVDDLEDELYAQKLKYKAISEELDHALND 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4566788999999999999998888888888888765443
No 413
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=49.87 E-value=19 Score=29.89 Aligned_cols=24 Identities=25% Similarity=0.225 Sum_probs=11.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHH
Q 008611 509 PETTEHLIATLKAEKEELESSLSK 532 (559)
Q Consensus 509 ~~~~~~~~~~l~~e~~~~~~~l~~ 532 (559)
+...+..++.++..+..++..+.+
T Consensus 47 iq~L~~el~~l~~~~~sLE~~l~e 70 (131)
T 3tnu_A 47 MQNLEIELQSQLSMKASLENSLEE 70 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHH
Confidence 344444455555444444444433
No 414
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=49.74 E-value=1.7e+02 Score=27.41 Aligned_cols=145 Identities=11% Similarity=0.126 Sum_probs=73.9
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe--CCEEEEEeccCCCCCCcc
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW--ENKLLSIAGHTKDPSEII 272 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~ 272 (559)
++.+++.|+.+ ..+.+||+.+++-...-. + ... .-.++.+ ++.+++.|+.+.
T Consensus 76 dg~~l~s~s~D-----~~v~~wd~~~~~~~~~~~-~------------h~~--~v~~~~~~~~~~~l~s~s~D~------ 129 (319)
T 3frx_A 76 DGAYALSASWD-----KTLRLWDVATGETYQRFV-G------------HKS--DVMSVDIDKKASMIISGSRDK------ 129 (319)
T ss_dssp TSSEEEEEETT-----SEEEEEETTTTEEEEEEE-C------------CSS--CEEEEEECTTSCEEEEEETTS------
T ss_pred CCCEEEEEeCC-----CEEEEEECCCCCeeEEEc-c------------CCC--cEEEEEEcCCCCEEEEEeCCC------
Confidence 45666666643 468889998876432111 0 011 1122222 567777787654
Q ss_pred eEEEEECCCCeEEEeccCCCCCCCccceEEEEE-------CCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCC
Q 008611 273 QVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-------GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPP 345 (559)
Q Consensus 273 ~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-------~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p 345 (559)
.+.++|+....-..+.. .... -..+... ++.+++.||.++ .+..||+.+.+-...-. +
T Consensus 130 ~i~vwd~~~~~~~~~~~---h~~~--v~~~~~~~~~~~~~~~~~l~s~~~d~------~i~~wd~~~~~~~~~~~-~--- 194 (319)
T 3frx_A 130 TIKVWTIKGQCLATLLG---HNDW--VSQVRVVPNEKADDDSVTIISAGNDK------MVKAWNLNQFQIEADFI-G--- 194 (319)
T ss_dssp CEEEEETTSCEEEEECC---CSSC--EEEEEECCC------CCEEEEEETTS------CEEEEETTTTEEEEEEC-C---
T ss_pred eEEEEECCCCeEEEEec---cCCc--EEEEEEccCCCCCCCccEEEEEeCCC------EEEEEECCcchhheeec-C---
Confidence 37778876554333321 0000 1111111 223566666533 47888887655432211 1
Q ss_pred CcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCe
Q 008611 346 SPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTME 385 (559)
Q Consensus 346 ~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~ 385 (559)
....-.+++...++.+++.||.+ ..+.+||+.+.+
T Consensus 195 h~~~v~~~~~sp~g~~l~s~~~d-----g~i~iwd~~~~~ 229 (319)
T 3frx_A 195 HNSNINTLTASPDGTLIASAGKD-----GEIMLWNLAAKK 229 (319)
T ss_dssp CCSCEEEEEECTTSSEEEEEETT-----CEEEEEETTTTE
T ss_pred CCCcEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCc
Confidence 11112334444566677777754 358889987764
No 415
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=49.68 E-value=22 Score=26.16 Aligned_cols=38 Identities=24% Similarity=0.337 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhh
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTD 553 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~ 553 (559)
+.+|..|.+.++..+...++-..+++.++.+.|+++..
T Consensus 39 vdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElkr 76 (77)
T 2w83_C 39 VDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELRK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66777777777777777777777777777777776643
No 416
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=49.53 E-value=34 Score=25.27 Aligned_cols=30 Identities=17% Similarity=0.278 Sum_probs=18.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008611 510 ETTEHLIATLKAEKEELESSLSKEKLQSIQ 539 (559)
Q Consensus 510 ~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~ 539 (559)
+..+..|..+..++.+++..++...++.+.
T Consensus 8 ~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~ 37 (74)
T 2xv5_A 8 DTSRRLLAEKEREMAEMRARMQQQLDEYQE 37 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556777777777776666666555554
No 417
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=49.51 E-value=49 Score=26.46 Aligned_cols=35 Identities=31% Similarity=0.344 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhh
Q 008611 523 KEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKV 557 (559)
Q Consensus 523 ~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ke 557 (559)
...++..+...+.....++..+.++|+...+|++.
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~ 71 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERA 71 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 34455555555555566666666666666666654
No 418
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=49.40 E-value=2.3e+02 Score=28.86 Aligned_cols=108 Identities=10% Similarity=0.116 Sum_probs=53.9
Q ss_pred CCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEE-CCEEEEEcCcCCCCCCcCceEEEECCCC
Q 008611 255 ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV-GTSLVIFGGEDAKRSLLNDLHILDLETM 333 (559)
Q Consensus 255 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~yd~~t~ 333 (559)
++..++.|+.+. .+..||.....-..+.. ...+ -.+++.. +++.++.|+.+ ..+.+||....
T Consensus 355 ~g~~l~~~~~dg------~v~~~~~~~~~~~~~~~---~~~~--v~~~~~s~dg~~l~~~~~d------~~v~~~~~~~~ 417 (577)
T 2ymu_A 355 DGQTIASASDDK------TVKLWNRNGQLLQTLTG---HSSS--VRGVAFSPDGQTIASASDD------KTVKLWNRNGQ 417 (577)
T ss_dssp TSSEEEEEETTS------EEEEEETTCCEEEEEEC---CSSC--EEEEEECTTSSCEEEEETT------SEEEEECTTCC
T ss_pred CCCEEEEEeCCC------EEEEEcCCCCEEEEecC---CCCC--eEEEEECCCCCEEEEEeCC------CEEEEEeCCCC
Confidence 566777776532 47778865554444431 1111 1112222 45666666643 34777886544
Q ss_pred ceEEecCCCCCCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCCCeeEec
Q 008611 334 TWDEIDAVGVPPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQTMEWSRP 389 (559)
Q Consensus 334 ~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~ 389 (559)
.-..+... ...-.++++..++.+++.|+.+ ..+.+||.....-..+
T Consensus 418 ~~~~~~~~-----~~~v~~~~~s~d~~~l~~~~~d-----~~v~~w~~~~~~~~~~ 463 (577)
T 2ymu_A 418 LLQTLTGH-----SSSVWGVAFSPDDQTIASASDD-----KTVKLWNRNGQLLQTL 463 (577)
T ss_dssp EEEEEECC-----SSCEEEEEECTTSSEEEEEETT-----SEEEEEETTSCEEEEE
T ss_pred EEEEecCC-----CCCeEEEEECCCCCEEEEEcCC-----CEEEEEECCCCEEEEE
Confidence 33333211 1111233444455566666643 3477888766554444
No 419
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=49.38 E-value=21 Score=40.98 Aligned_cols=6 Identities=33% Similarity=0.512 Sum_probs=2.5
Q ss_pred EEEEcc
Q 008611 198 MYIYGG 203 (559)
Q Consensus 198 lyv~GG 203 (559)
.|=+-|
T Consensus 558 ~Y~~~g 563 (1080)
T 2dfs_A 558 EYQCEG 563 (1080)
T ss_dssp EEECTT
T ss_pred EEehhh
Confidence 344444
No 420
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=49.28 E-value=2e+02 Score=28.09 Aligned_cols=130 Identities=8% Similarity=-0.049 Sum_probs=0.0
Q ss_pred eeEEeCCEEEEEeccCCCCCCcceEEEEECCCCeEEEec----------cCCCCCCCccceEEEEECCEEEE---EcCcC
Q 008611 250 SLIPWENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLK----------TYGKPPVSRGGQSVTLVGTSLVI---FGGED 316 (559)
Q Consensus 250 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~----------~~g~~p~~r~~~~~~~~~~~lyv---~GG~~ 316 (559)
.....++.+|+. .....++.+|+.+..-..+. ..+..|.+....++..-++++|+ -|+..
T Consensus 219 ~~~~~~~~~~~~-------~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~ 291 (373)
T 2mad_H 219 AQANKSGRIVWP-------VYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAW 291 (373)
T ss_pred eeEecCCEEEEE-------cCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcc
Q ss_pred CCCCCcCceEEEECCCCce-EEecCCCCCCCcccccEEEEEcCCE-EEEEcCCCCCCCcCceEEEECCCCeeEec-cCCC
Q 008611 317 AKRSLLNDLHILDLETMTW-DEIDAVGVPPSPRSDHAAAVHAERY-LLIFGGGSHAACFNDLHVLDLQTMEWSRP-TQQG 393 (559)
Q Consensus 317 ~~~~~~~~~~~yd~~t~~W-~~~~~~~~~p~~r~~~~~~~~~~~~-l~v~GG~~~~~~~~dv~~~d~~~~~W~~~-~~~~ 393 (559)
......++++++|+.+.+- ..+ |.+..-+++.+..++. +++.+... .++|.+||..+.+-... ...+
T Consensus 292 ~~~~~~~~V~VID~~t~~vv~~i------~~g~~p~~i~~s~Dg~~~l~v~~~~----~~~V~ViD~~t~~vv~~i~~vG 361 (373)
T 2mad_H 292 KLHAAAKEVTSVTGLVGQTSSQI------SLGHDVDAISVAQDGGPDLYALSAG----TEVLHIYDAGAGDQDQSTVELG 361 (373)
T ss_pred cccCCCCeEEEEECCCCEEEEEE------ECCCCcCeEEECCCCCeEEEEEcCC----CCeEEEEECCCCCEEeeecCCC
Q ss_pred CCC
Q 008611 394 EIP 396 (559)
Q Consensus 394 ~~p 396 (559)
..|
T Consensus 362 ~~P 364 (373)
T 2mad_H 362 SGP 364 (373)
T ss_pred CCC
No 421
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=49.27 E-value=35 Score=26.88 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=29.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhh
Q 008611 511 TTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTD 553 (559)
Q Consensus 511 ~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~ 553 (559)
..++....|.+.++.++..+...+.+...++.++.+.+..+.+
T Consensus 62 ~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 62 AKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555677777777777777777777777777777776666543
No 422
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=48.81 E-value=27 Score=29.54 Aligned_cols=26 Identities=15% Similarity=-0.065 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHH
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLK 541 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~ 541 (559)
++.++.|+..++.++...+.++.+|+
T Consensus 98 ~e~l~DEl~aLqlq~n~lE~kl~kLq 123 (152)
T 3a7p_A 98 TERLNAALISGTIENNVLQQKLSDLK 123 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 423
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=48.71 E-value=14 Score=23.20 Aligned_cols=24 Identities=13% Similarity=0.141 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHH
Q 008611 518 TLKAEKEELESSLSKEKLQSIQLK 541 (559)
Q Consensus 518 ~l~~e~~~~~~~l~~~~~~~~~l~ 541 (559)
.+++.++.++.++...+.++.+++
T Consensus 8 avKkKiq~lq~q~d~aee~~~~~~ 31 (37)
T 3azd_A 8 AVRRKIRSLQEQNYHLENEVARLK 31 (37)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333
No 424
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=48.60 E-value=1.7e+02 Score=27.24 Aligned_cols=150 Identities=11% Similarity=-0.036 Sum_probs=77.5
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe-CCEEEEEeccCCCCCCcce
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-ENKLLSIAGHTKDPSEIIQ 273 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~ 273 (559)
+++|||...... ...+++||+.+++...+... +..+.....+.. ++.+|+.-- ....
T Consensus 82 dG~l~vad~~~~---~~~v~~~d~~~g~~~~~~~~-------------~~~~~~~g~~~~~~~~~~v~d~------~~g~ 139 (306)
T 2p4o_A 82 NGDLVATGWNAD---SIPVVSLVKSDGTVETLLTL-------------PDAIFLNGITPLSDTQYLTADS------YRGA 139 (306)
T ss_dssp TSCEEEEEECTT---SCEEEEEECTTSCEEEEEEC-------------TTCSCEEEEEESSSSEEEEEET------TTTE
T ss_pred CCcEEEEeccCC---cceEEEEcCCCCeEEEEEeC-------------CCccccCcccccCCCcEEEEEC------CCCe
Confidence 567888753111 12488999989888766542 123333333333 456777532 2347
Q ss_pred EEEEECCCCeEEE--eccCCC--CCCC--ccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCC-Cce---EEecCCCC
Q 008611 274 VKVFDLQTCSWST--LKTYGK--PPVS--RGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLET-MTW---DEIDAVGV 343 (559)
Q Consensus 274 v~~yd~~t~~W~~--~~~~g~--~p~~--r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t-~~W---~~~~~~~~ 343 (559)
++++|+.+..-.. ...... .+.. .....+..-++.||+.-- ..+.|++|++.. .+. ..+...
T Consensus 140 i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~------~~~~I~~~~~~~~g~~~~~~~~~~~-- 211 (306)
T 2p4o_A 140 IWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNT------EKMLLLRIPVDSTDKPGEPEIFVEQ-- 211 (306)
T ss_dssp EEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEET------TTTEEEEEEBCTTSCBCCCEEEEES--
T ss_pred EEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEeC------CCCEEEEEEeCCCCCCCccEEEecc--
Confidence 9999988653211 111000 0100 111223333557888643 245799999864 221 111111
Q ss_pred CCCcccccEEEEEcCCEEEEEcCCCCCCCcCceEEEECCC
Q 008611 344 PPSPRSDHAAAVHAERYLLIFGGGSHAACFNDLHVLDLQT 383 (559)
Q Consensus 344 ~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~dv~~~d~~~ 383 (559)
.. -..+++-.++.|||.-.. .+.|.+||+..
T Consensus 212 -~~---P~gi~vd~dG~l~va~~~-----~~~V~~~~~~G 242 (306)
T 2p4o_A 212 -TN---IDDFAFDVEGNLYGATHI-----YNSVVRIAPDR 242 (306)
T ss_dssp -CC---CSSEEEBTTCCEEEECBT-----TCCEEEECTTC
T ss_pred -CC---CCCeEECCCCCEEEEeCC-----CCeEEEECCCC
Confidence 11 134555556668887532 24689999863
No 425
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=48.43 E-value=22 Score=24.69 Aligned_cols=19 Identities=11% Similarity=0.095 Sum_probs=7.0
Q ss_pred HHHHHHHHhhhHHHHHHHH
Q 008611 529 SLSKEKLQSIQLKQDLTEA 547 (559)
Q Consensus 529 ~l~~~~~~~~~l~~~~~~~ 547 (559)
.++....++..|+.+++.+
T Consensus 35 ~~~~l~~e~~~L~~~~~~l 53 (57)
T 2wuj_A 35 DYEIVLRKKTELEAKVNEL 53 (57)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333433344333333
No 426
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=47.92 E-value=27 Score=30.66 Aligned_cols=38 Identities=11% Similarity=0.058 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q 008611 512 TEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAES 549 (559)
Q Consensus 512 ~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~ 549 (559)
.+.+...|.++++..+..++..+++++.++.+....+.
T Consensus 25 L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~ 62 (190)
T 4emc_A 25 LVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKT 62 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 33444455555555555555555555555555544333
No 427
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=47.81 E-value=2.5e+02 Score=30.39 Aligned_cols=118 Identities=14% Similarity=0.108 Sum_probs=62.4
Q ss_pred CCEEEEEeccCCCCCCcceEEEEECCC-CeEEE-eccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEEC--
Q 008611 255 ENKLLSIAGHTKDPSEIIQVKVFDLQT-CSWST-LKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDL-- 330 (559)
Q Consensus 255 ~~~lyv~GG~~~~~~~~~~v~~yd~~t-~~W~~-~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~-- 330 (559)
++.||+..-... .....++.+|+.+ ..|.. +-+. .....-......++.||+....++ ...++++|+
T Consensus 330 g~~l~~~t~~~~--a~~~~L~~~d~~~~~~~~~~li~~---~~~~~l~~~~~~~~~lv~~~~~~g----~~~l~~~dl~~ 400 (751)
T 2xe4_A 330 TSHLVILTNEGG--AVNHKLLIAPRGQPSDWSHVLVDH---SEDVFMESIAVRSNYLVVAGRRAG----LTRIWTMMADS 400 (751)
T ss_dssp TTEEEEEECTTT--CTTCEEEEEETTSTTCCCCEEECC---CSSEEEEEEEECSSEEEEEEEETT----EEEEEEEECCT
T ss_pred CCEEEEEeCCCC--CCCcEEEEEcCCCcccceeeEECC---CCCcEEEEEEEECCEEEEEEEeCC----EEEEEEEeccc
Confidence 678888865531 2345789999886 68876 5321 111111223334677777765443 356889996
Q ss_pred -----CCCc-eEEecCCCCCCCcccccEEEE-------EcCCEE-EEEcCCCCCCCcCceEEEECCCCeeEecc
Q 008611 331 -----ETMT-WDEIDAVGVPPSPRSDHAAAV-------HAERYL-LIFGGGSHAACFNDLHVLDLQTMEWSRPT 390 (559)
Q Consensus 331 -----~t~~-W~~~~~~~~~p~~r~~~~~~~-------~~~~~l-~v~GG~~~~~~~~dv~~~d~~~~~W~~~~ 390 (559)
.+.. ...+.. |.. .+...+ ..++.+ |.+... ..-..++.||+.+.+...+.
T Consensus 401 ~~~~~~~g~~~~~l~l----~~~--~~~~~~~~~~~~~~~~~~l~~~~ss~---~~P~~~~~~d~~~~~~~~l~ 465 (751)
T 2xe4_A 401 QDGVFKAGTGLREVVM----EEP--IFTVHLVESQMLEYEEPTFRMEYSSL---ATPNTWFDVSPQDHSRTAVK 465 (751)
T ss_dssp TTSCCCTTTCCEECCC----CCS--SCEEEECGGGCCCTTCSCEEEEEEET---TEEEEEEEECTTTCCEEEEE
T ss_pred ccccccCCccceEECC----CCc--eeEEEeccCcccCCCCCEEEEEEeCC---CCCCEEEEEECCCCcEEEEe
Confidence 3444 444421 222 222222 122323 333221 22346889999887776664
No 428
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=47.60 E-value=56 Score=24.98 Aligned_cols=7 Identities=0% Similarity=0.007 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 008611 519 LKAEKEE 525 (559)
Q Consensus 519 l~~e~~~ 525 (559)
+..++..
T Consensus 19 ~eeel~~ 25 (89)
T 3bas_A 19 QLKQMDK 25 (89)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 429
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=47.50 E-value=39 Score=24.89 Aligned_cols=19 Identities=5% Similarity=0.256 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHhhhHH
Q 008611 523 KEELESSLSKEKLQSIQLK 541 (559)
Q Consensus 523 ~~~~~~~l~~~~~~~~~l~ 541 (559)
++.++..+...+.++.+++
T Consensus 7 ~~~~~~~i~~lE~eL~~~r 25 (74)
T 2xv5_A 7 RDTSRRLLAEKEREMAEMR 25 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 430
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=47.22 E-value=38 Score=29.93 Aligned_cols=20 Identities=15% Similarity=0.076 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHhhhH
Q 008611 521 AEKEELESSLSKEKLQSIQL 540 (559)
Q Consensus 521 ~e~~~~~~~l~~~~~~~~~l 540 (559)
+++++.+.++...+.++.+|
T Consensus 49 ~eL~~~Ek~~~~L~~~~~~L 68 (189)
T 2v71_A 49 AQLVQAEQRNRDLQADNQRL 68 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 431
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=47.15 E-value=29 Score=27.96 Aligned_cols=27 Identities=26% Similarity=0.350 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLKQ 542 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~~ 542 (559)
+..+..+++.+.++|++.-+++++|.+
T Consensus 100 L~~~laqLe~ls~qL~~ls~~v~~L~~ 126 (140)
T 3iyn_Q 100 LTALLAQLDSLTRELNVVSQQLLDLRQ 126 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555543
No 432
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=46.94 E-value=37 Score=25.65 Aligned_cols=42 Identities=17% Similarity=0.200 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhhC
Q 008611 515 LIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVIA 559 (559)
Q Consensus 515 ~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kelq 559 (559)
.++.++..+..++.++.+.+.. ...++.+.+..+..++.+|+
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~---~~~~~~~~q~~i~~lE~eL~ 43 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEEN---FAVEAANYQDTIGRLQDEIQ 43 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
No 433
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=46.82 E-value=25 Score=21.63 Aligned_cols=27 Identities=19% Similarity=0.368 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 008611 525 ELESSLSKEKLQSIQLKQDLTEAESQN 551 (559)
Q Consensus 525 ~~~~~l~~~~~~~~~l~~~~~~~~~~~ 551 (559)
+++.+.++...+...|+.++.-++..+
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 334444444444444444444444333
No 434
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=46.44 E-value=1.7e+02 Score=26.65 Aligned_cols=54 Identities=13% Similarity=0.033 Sum_probs=28.7
Q ss_pred CceEEEECCCCceEEecCCCCCCCcccccEEEEE-cCCEEEEEcCCCCCCCcCceEEEECCCCe
Q 008611 323 NDLHILDLETMTWDEIDAVGVPPSPRSDHAAAVH-AERYLLIFGGGSHAACFNDLHVLDLQTME 385 (559)
Q Consensus 323 ~~~~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~dv~~~d~~~~~ 385 (559)
..+.++|..+..-...... . .....++.. .++.+++.+|... ..+.+||+.+.+
T Consensus 221 ~~i~lwd~~~~~~~~~~~~----~-~~v~~~~~~~~~~~~~~~sg~~d----~~i~iwd~~~~~ 275 (318)
T 4ggc_A 221 RHIRIWNVCSGACLSAVDA----H-SQVCSILWSPHYKELISGHGFAQ----NQLVIWKYPTMA 275 (318)
T ss_dssp CEEEEEETTTCCEEEEEEC----S-SCEEEEEEETTTTEEEEEECTTT----CCEEEEETTTCC
T ss_pred CEEEEEecccccccccccc----e-eeeeeeeecccccceEEEEEcCC----CEEEEEECCCCc
Confidence 3477888877665444321 1 111222333 3455666555432 348899987754
No 435
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=46.43 E-value=35 Score=28.04 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008611 516 IATLKAEKEELESSLSK 532 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~ 532 (559)
+..|+.+..+++.+|+.
T Consensus 20 ~~~l~~~~~el~~~l~~ 36 (125)
T 1joc_A 20 IEKLQTKVLELQRKLDN 36 (125)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 436
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=46.41 E-value=44 Score=25.36 Aligned_cols=12 Identities=8% Similarity=0.152 Sum_probs=4.3
Q ss_pred HHHHHHHHHhhh
Q 008611 528 SSLSKEKLQSIQ 539 (559)
Q Consensus 528 ~~l~~~~~~~~~ 539 (559)
..+.....++.+
T Consensus 35 ~~i~~lE~el~~ 46 (86)
T 1x8y_A 35 RLLAEKEREMAE 46 (86)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 437
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=46.35 E-value=38 Score=27.92 Aligned_cols=40 Identities=18% Similarity=0.171 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHh
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLY 555 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 555 (559)
+++|...+++++..++..+++..+|+..+.+.++-++.++
T Consensus 3 ~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~ 42 (133)
T 1fxk_C 3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLS 42 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677777777777777777766666666555443
No 438
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens}
Probab=46.14 E-value=7.7 Score=39.04 Aligned_cols=69 Identities=19% Similarity=0.105 Sum_probs=49.2
Q ss_pred CCCChhhHHHHhhheeeeecCCCCCCC----C---------C---CC--Chhhhhh--------HHHHhcCCCCCHHHHH
Q 008611 38 SKFSNDSALLLYALYQQATVGPCNVPK----P---------S---SW--SPVEQSK--------WKSWQGLGNMATTEAM 91 (559)
Q Consensus 38 ~~~~~~~~l~ly~l~kqa~~g~~~~~~----p---------~---~~--~~~~~~k--------~~aw~~~~~~s~~~a~ 91 (559)
...+.|+.|+|-+|--|+-+|+++... . + ++ ++....| ....+++.+++.++||
T Consensus 151 ~~~~~e~al~LAaL~~q~~~gd~~~~a~~~k~~~~~l~k~~~lk~flP~~l~~~ik~k~~rk~I~~~~kk~~~ls~~eak 230 (392)
T 4eku_A 151 SKVSEGMALQLGCLELRRFFKDMPHNALDKKSNFELLEKEVGLDLFFPKQMQENLKPKQFRKMIQQTFQQYASLREEECV 230 (392)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTSCTTGGGSHHHHHHHHHHTCGGGTSCHHHHHHSCHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhhhcchhhhccCCCHHHHhhhccHHHhcCHHHHhhcCHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 457899999999999999999876421 0 1 11 1111111 2356778999999999
Q ss_pred HHHHHHHHHhCCCccc
Q 008611 92 RLFVKILEEEDPGWYS 107 (559)
Q Consensus 92 ~~yv~~~~~~~~~~~~ 107 (559)
.+|++.++++ |.|..
T Consensus 231 l~YL~~l~~L-p~yG~ 245 (392)
T 4eku_A 231 MKFFNTLAGF-ANIDQ 245 (392)
T ss_dssp HHHHHHHTTS-SCCSC
T ss_pred HHHHHHHHhh-hccCc
Confidence 9999999998 87753
No 439
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=46.09 E-value=2.2e+02 Score=27.72 Aligned_cols=186 Identities=12% Similarity=0.092 Sum_probs=95.2
Q ss_pred eEEecccCCCCCCcccceeEEEE---CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCC---
Q 008611 172 QWIAPPISGQRPKARYEHGAAVV---QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTP--- 245 (559)
Q Consensus 172 ~W~~~~~~g~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~--- 245 (559)
+|....+ .+....-+++++. .+.||+.+.. + ..-.-+++.+-...+|+.+..... .+..+..
T Consensus 44 ~W~~~~~---~~~~~~v~~i~~dp~~~~~l~~g~~~-g-~~g~gl~~s~D~G~tW~~~~~~~~-------~~~~~~~~~~ 111 (394)
T 3b7f_A 44 TWELRGP---VFLGHTIHHIVQDPREPERMLMAART-G-HLGPTVFRSDDGGGNWTEATRPPA-------FNKAPEGETG 111 (394)
T ss_dssp SEEEEEE---ESTTSEEEEEEECSSSTTCEEEEEEC----CCEEEEEESSTTSCCEECSBCCC-------CCCCC----C
T ss_pred CceECCc---cCCCCceEEEEECCCCCCeEEEEecC-C-CCCccEEEeCCCCCCceECCcccc-------CCCccccccc
Confidence 7887532 1122233444444 4678877542 1 111247777667789998853210 0000000
Q ss_pred -Cccc--eeEEe----CCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCC--------------CccceEEEE
Q 008611 246 -CAGH--SLIPW----ENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPV--------------SRGGQSVTL 304 (559)
Q Consensus 246 -r~~~--~~~~~----~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~--------------~r~~~~~~~ 304 (559)
...+ +++.. .+.||+.+- ...+++.+-...+|+.+......|. ....++++.
T Consensus 112 ~~~~~i~~l~~~~~~~~~~l~~g~~-------~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~ 184 (394)
T 3b7f_A 112 RVVDHVFWLTPGHASEPGTWYAGTS-------PQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILV 184 (394)
T ss_dssp CCCCEEEEEEECCTTSTTCEEEEEE-------TTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEE
T ss_pred ccccceeEEEeCCCCCCCEEEEEec-------CCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEE
Confidence 1111 22222 456766542 1357888777889999853111121 112233333
Q ss_pred E---CCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCC---CCCC-----cccccEEEEEcC--CEEEEEcCCCCCC
Q 008611 305 V---GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVG---VPPS-----PRSDHAAAVHAE--RYLLIFGGGSHAA 371 (559)
Q Consensus 305 ~---~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~---~~p~-----~r~~~~~~~~~~--~~l~v~GG~~~~~ 371 (559)
. .+.||+..+. ..+++.+-...+|+.+.... ..|. ....+++++... +.||+..+
T Consensus 185 d~~~~~~l~vg~~~-------ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~----- 252 (394)
T 3b7f_A 185 DPRDPKHLYIGMSS-------GGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH----- 252 (394)
T ss_dssp CTTCTTCEEEEEET-------BEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET-----
T ss_pred CCCCCCEEEEEECC-------CCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC-----
Confidence 2 2467775431 24778877788999875310 1121 122345554433 55666432
Q ss_pred CcCceEEEECCCCeeEecc
Q 008611 372 CFNDLHVLDLQTMEWSRPT 390 (559)
Q Consensus 372 ~~~dv~~~d~~~~~W~~~~ 390 (559)
..|++.+-...+|..+.
T Consensus 253 --~gl~~s~D~G~tW~~~~ 269 (394)
T 3b7f_A 253 --CGIYRMDRREGVWKRIG 269 (394)
T ss_dssp --TEEEEEETTTTEEECGG
T ss_pred --CeEEEeCCCCCcceECC
Confidence 34888888889999985
No 440
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=46.00 E-value=27 Score=35.76 Aligned_cols=37 Identities=8% Similarity=0.093 Sum_probs=19.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 008611 511 TTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEA 547 (559)
Q Consensus 511 ~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~ 547 (559)
.++++|+.....+..||..|+++..++++||-+|+-+
T Consensus 121 yLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiq 157 (562)
T 3ghg_A 121 VLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIK 157 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444555555555666666666666555543
No 441
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=45.93 E-value=56 Score=25.14 Aligned_cols=24 Identities=13% Similarity=0.046 Sum_probs=10.7
Q ss_pred HHHhhhHHHHHHHHHhhhhhHhhh
Q 008611 534 KLQSIQLKQDLTEAESQNTDLYKV 557 (559)
Q Consensus 534 ~~~~~~l~~~~~~~~~~~~~~~ke 557 (559)
...-+++..+.+++..+++.+.++
T Consensus 60 RadREkl~~eKe~L~~ql~~lq~q 83 (94)
T 3jsv_C 60 RHAREKLVEKKEYLQEQLEQLQRE 83 (94)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHT
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHH
Confidence 333334444444444455544444
No 442
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=45.92 E-value=57 Score=20.90 Aligned_cols=32 Identities=22% Similarity=0.317 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHh
Q 008611 524 EELESSLSKEKLQSIQLKQDLTEAESQNTDLY 555 (559)
Q Consensus 524 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 555 (559)
.++|.+..+.+..+.+|++.+.-++.+.+.|.
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq~EN~mLR 37 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQNENQMLR 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 33344444444444444444444444444333
No 443
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=45.82 E-value=38 Score=26.93 Aligned_cols=34 Identities=15% Similarity=0.204 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhh
Q 008611 519 LKAEKEELESSLSKEKLQSIQLKQDLTEAESQNT 552 (559)
Q Consensus 519 l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~ 552 (559)
+.+++++++.++...+.+...++.++.+.++.+.
T Consensus 8 ~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~ 41 (112)
T 1l8d_A 8 LETKKTTIEEERNEITQRIGELKNKIGDLKTAIE 41 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444443
No 444
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=45.79 E-value=47 Score=21.32 Aligned_cols=29 Identities=7% Similarity=0.227 Sum_probs=15.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhhhhhHhh
Q 008611 528 SSLSKEKLQSIQLKQDLTEAESQNTDLYK 556 (559)
Q Consensus 528 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~k 556 (559)
+++...-.++.+-++++.+++.++.+|+.
T Consensus 9 qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 9 QNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555556666666555543
No 445
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=45.21 E-value=25 Score=29.01 Aligned_cols=16 Identities=19% Similarity=0.422 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 008611 516 IATLKAEKEELESSLS 531 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~ 531 (559)
++.++..+..++..+.
T Consensus 52 l~~l~~~~~~LE~~l~ 67 (129)
T 3tnu_B 52 IDNVKKQCANLQNAIA 67 (129)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHH
Confidence 4444444444444433
No 446
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=45.14 E-value=38 Score=24.42 Aligned_cols=33 Identities=18% Similarity=0.125 Sum_probs=19.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 008611 510 ETTEHLIATLKAEKEELESSLSKEKLQSIQLKQ 542 (559)
Q Consensus 510 ~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~ 542 (559)
..++..|.+|+.++.+.+..+++.+.++.+++.
T Consensus 21 ~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qs 53 (67)
T 1zxa_A 21 MLKEERIKELEKRLSEKEEEIQELKRKLHKCQS 53 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666666666666666655543
No 447
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=45.13 E-value=1e+02 Score=32.86 Aligned_cols=209 Identities=8% Similarity=-0.042 Sum_probs=0.0
Q ss_pred EEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCC----ccceeEEeCCEEEEEeccCCCC---CCc
Q 008611 199 YIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPC----AGHSLIPWENKLLSIAGHTKDP---SEI 271 (559)
Q Consensus 199 yv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r----~~~~~~~~~~~lyv~GG~~~~~---~~~ 271 (559)
|++.+.++ .++++|+.+++-..+-.. ... .......-+|+.++++...... ...
T Consensus 29 ~~~~~~d~-----~i~~~~~~~g~~~~~~~~--------------~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~ 89 (719)
T 1z68_A 29 YLHQSADN-----NIVLYNIETGQSYTILSN--------------RTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYT 89 (719)
T ss_dssp EEEECTTS-----CEEEEESSSCCEEEEECH--------------HHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEE
T ss_pred EEEEcCCC-----CEEEEEcCCCcEEEEEcc--------------ccccccceeeEEECCCCCeEEEEecCceeEEeecc
Q ss_pred ceEEEEECCCCeE---EEeccCCCCCCCccceEEEEECCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCCCCCCcc
Q 008611 272 IQVKVFDLQTCSW---STLKTYGKPPVSRGGQSVTLVGTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVGVPPSPR 348 (559)
Q Consensus 272 ~~v~~yd~~t~~W---~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~p~~r 348 (559)
..++++|+.+++. ..+. .........-+++.++++. -++|+++|+.+..-..+...+....-.
T Consensus 90 ~~i~~~d~~~g~~~~~~~l~-------~~~~~~~~SPDG~~la~~~-------~~~i~~~~~~~g~~~~l~~~~~~~~v~ 155 (719)
T 1z68_A 90 ATYYIYDLSNGEFVRGNELP-------RPIQYLCWSPVGSKLAYVY-------QNNIYLKQRPGDPPFQITFNGRENKIF 155 (719)
T ss_dssp EEEEEEETTTTEECCSSCCC-------SSBCCEEECSSTTCEEEEE-------TTEEEEESSTTSCCEECCCCCBTTTEE
T ss_pred eEEEEEECCCCccccceecC-------cccccceECCCCCEEEEEE-------CCeEEEEeCCCCCcEEEecCCCcCCeE
Q ss_pred ccc--------------EEEEEcCCEEEEEcCCCCCC-----------------------------CcCceEEEECCCCe
Q 008611 349 SDH--------------AAAVHAERYLLIFGGGSHAA-----------------------------CFNDLHVLDLQTME 385 (559)
Q Consensus 349 ~~~--------------~~~~~~~~~l~v~GG~~~~~-----------------------------~~~dv~~~d~~~~~ 385 (559)
.++ +.....++..++++..+... ....++++|+.+..
T Consensus 156 ~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~ 235 (719)
T 1z68_A 156 NGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPA 235 (719)
T ss_dssp ESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHH
T ss_pred cccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCC
Q ss_pred ---eEeccCCCCCCCCccccEEEEECCceecceeeeeeccCCCcEEEEEcCcCCCCcccEEEEe----CCCcceecc
Q 008611 386 ---WSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLK----PSHKSTLSS 455 (559)
Q Consensus 386 ---W~~~~~~~~~p~~R~~hs~~~~~~~~~iG~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~~d----~~~~~~~~~ 455 (559)
|..+.....+.........+.+.. .+++++.....+.....|+++| +.+......
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~Sp---------------D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~ 297 (719)
T 1z68_A 236 YVGPQEVPVPAMIASSDYYFSWLTWVT---------------DERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKT 297 (719)
T ss_dssp HHCCEECCCCHHHHTSCEEEEEEEESS---------------SSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGG
T ss_pred ccceeEccCCccCCCCcceEEEeEEeC---------------CCeEEEEEeccccCeEEEEEEcccCCCCCCceEEE
No 448
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=45.01 E-value=42 Score=26.84 Aligned_cols=40 Identities=18% Similarity=0.238 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhH
Q 008611 515 LIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDL 554 (559)
Q Consensus 515 ~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 554 (559)
..+++..+.+.++++++....++.+++.++.+.+.-+.+|
T Consensus 7 e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL 46 (117)
T 2zqm_A 7 QVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEI 46 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666666666666665555444
No 449
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=44.80 E-value=18 Score=27.37 Aligned_cols=24 Identities=38% Similarity=0.411 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 008611 512 TEHLIATLKAEKEELESSLSKEKL 535 (559)
Q Consensus 512 ~~~~~~~l~~e~~~~~~~l~~~~~ 535 (559)
.+..+++|+.++.+++.++++...
T Consensus 6 L~~~i~~L~~q~~~L~~ei~~~~a 29 (85)
T 3viq_B 6 LESRVHLLEQQKEQLESSLQDALA 29 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555544
No 450
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=44.38 E-value=73 Score=23.71 Aligned_cols=42 Identities=12% Similarity=0.042 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHH-------HHHHHHHhhhhhHhhh
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLK-------QDLTEAESQNTDLYKV 557 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~-------~~~~~~~~~~~~~~ke 557 (559)
...|.+|+..+.-++.+...+-.|-+ .++..++++++..+.|
T Consensus 21 ~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~e 69 (81)
T 3qh9_A 21 AEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAE 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHH
Confidence 34555555566655555555555544 4444455555444433
No 451
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=43.93 E-value=45 Score=20.08 Aligned_cols=24 Identities=13% Similarity=0.250 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHH
Q 008611 525 ELESSLSKEKLQSIQLKQDLTEAE 548 (559)
Q Consensus 525 ~~~~~l~~~~~~~~~l~~~~~~~~ 548 (559)
++|.++++.-.+...|+.+++-+.
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk 27 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHH
Confidence 444445555555555555554433
No 452
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=43.90 E-value=53 Score=25.81 Aligned_cols=49 Identities=12% Similarity=0.204 Sum_probs=31.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhh--------HHHHHHHHHhhhhhHhhhh
Q 008611 510 ETTEHLIATLKAEKEELESSLSKEKLQSIQ--------LKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 510 ~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~--------l~~~~~~~~~~~~~~~kel 558 (559)
++....+.+.+..+++.+.-|+++..+... +..++.+....++.+.+++
T Consensus 34 eerk~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~el 90 (102)
T 1vcs_A 34 DEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDF 90 (102)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777777777777777776665433 4456666666766666665
No 453
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=43.68 E-value=34 Score=19.47 Aligned_cols=13 Identities=23% Similarity=0.279 Sum_probs=4.9
Q ss_pred HHHHHHHHHhhhh
Q 008611 540 LKQDLTEAESQNT 552 (559)
Q Consensus 540 l~~~~~~~~~~~~ 552 (559)
|+.+++.+++.++
T Consensus 13 lesklqalekkle 25 (31)
T 3ljm_A 13 LESKLQALEKKLE 25 (31)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 454
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=43.51 E-value=80 Score=23.30 Aligned_cols=47 Identities=17% Similarity=0.131 Sum_probs=25.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH-----hhhHHHHHHHHHhhhhhHhhh
Q 008611 511 TTEHLIATLKAEKEELESSLSKEKLQ-----SIQLKQDLTEAESQNTDLYKV 557 (559)
Q Consensus 511 ~~~~~~~~l~~e~~~~~~~l~~~~~~-----~~~l~~~~~~~~~~~~~~~ke 557 (559)
+.++.|+..+-=.+.+.+.|++...+ +.+-++++.++...|.+|.++
T Consensus 26 ~lrq~I~DKQ~~i~~Lt~eLq~A~~eaNpaeIA~~~~~L~qAraDL~~l~r~ 77 (90)
T 4b6x_A 26 ALRQEIEDKQLMVNNLTDELQDAIDEANPAEIANTSQQLRHARADLADLQRR 77 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555555433 344556666666666666654
No 455
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=43.42 E-value=95 Score=22.75 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=25.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHhhhh
Q 008611 511 TTEHLIATLKAEKEELESSLSKEKLQS----IQLKQDLTEAESQNT 552 (559)
Q Consensus 511 ~~~~~~~~l~~e~~~~~~~l~~~~~~~----~~l~~~~~~~~~~~~ 552 (559)
+.++.+..|...++.++.++.....+. .+|++.+..+|.++.
T Consensus 4 dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~ 49 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLK 49 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455667777777777776666654443 345555555555553
No 456
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=43.41 E-value=46 Score=27.44 Aligned_cols=13 Identities=23% Similarity=0.358 Sum_probs=5.5
Q ss_pred HHHhhhhhHhhhh
Q 008611 546 EAESQNTDLYKVI 558 (559)
Q Consensus 546 ~~~~~~~~~~kel 558 (559)
.++..+.+|.++|
T Consensus 108 kle~e~~~Lk~~l 120 (129)
T 2fxo_A 108 KLEDECSELKRDI 120 (129)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 457
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=43.22 E-value=29 Score=27.64 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 008611 513 EHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEA 547 (559)
Q Consensus 513 ~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~ 547 (559)
+..++++..++.++.......+.++.+++..+...
T Consensus 9 ~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 9 ETKKTTIEEERNEITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445555555555555555555555555444444
No 458
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=43.11 E-value=36 Score=26.16 Aligned_cols=35 Identities=23% Similarity=0.238 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHh
Q 008611 521 AEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLY 555 (559)
Q Consensus 521 ~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 555 (559)
.+...+|......+.+.++|.+++.+..+.+..+.
T Consensus 48 ~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k 82 (90)
T 2wt7_B 48 QQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYK 82 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555556666666655555554443
No 459
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=42.30 E-value=79 Score=21.50 Aligned_cols=31 Identities=3% Similarity=0.065 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTE 546 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~ 546 (559)
+.+|..+.+++-.++.+.+.++..|+.++..
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al~~~v~~ 36 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAARSDAQA 36 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444443
No 460
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=42.21 E-value=60 Score=26.80 Aligned_cols=49 Identities=8% Similarity=0.069 Sum_probs=30.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH----------HHhhhHHHHHHHHHhhhhhHhhhhC
Q 008611 511 TTEHLIATLKAEKEELESSLSKEK----------LQSIQLKQDLTEAESQNTDLYKVIA 559 (559)
Q Consensus 511 ~~~~~~~~l~~e~~~~~~~l~~~~----------~~~~~l~~~~~~~~~~~~~~~kelq 559 (559)
+.+..++.++++++++++.+...+ .++...++-+.+.+.++.+++.+|+
T Consensus 71 EL~~~l~sie~dLeDLe~sI~ivE~np~kF~l~~~Ei~~Rr~fV~~~r~~I~~mk~~l~ 129 (130)
T 4dnd_A 71 ELRNGLRSIEWDLEDLEETIGIVEANPGKFKLPAGDLQERKVFVERMREAVQEMKDHMV 129 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344556666677777666666543 2345555666677777777776663
No 461
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=42.19 E-value=62 Score=27.95 Aligned_cols=37 Identities=22% Similarity=0.295 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 008611 515 LIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQN 551 (559)
Q Consensus 515 ~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 551 (559)
.++.|..+++.+...+.....+..+|...+..+|+.-
T Consensus 98 ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~ 134 (168)
T 3o0z_A 98 RITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEK 134 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444445554444444433
No 462
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=42.06 E-value=3.5e+02 Score=28.99 Aligned_cols=150 Identities=9% Similarity=0.002 Sum_probs=75.9
Q ss_pred eCCEEEEEeccCCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEE--ECCEEEEEcCcCCCCCCcCceEEEECC
Q 008611 254 WENKLLSIAGHTKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTL--VGTSLVIFGGEDAKRSLLNDLHILDLE 331 (559)
Q Consensus 254 ~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~yd~~ 331 (559)
.++.||+.-. ..+.|.++++....-..+... .+..|+ .+++ .++.||+.--. ....|+++++.
T Consensus 463 ~~g~LY~tD~------~~~~I~v~d~dg~~~~~l~~~-~~~~P~---giavDp~~g~ly~td~~-----~~~~I~~~~~d 527 (699)
T 1n7d_A 463 IHSNIYWTDS------VLGTVSVADTKGVKRKTLFRE-QGSKPR---AIVVDPVHGFMYWTDWG-----TPAKIKKGGLN 527 (699)
T ss_dssp SSSBCEECCT------TTSCEEEEBSSSCCEEEECCC-SSCCCC---CEECCSSSSCCEECCCS-----SSCCEEBCCSS
T ss_pred eCCcEEEEec------cCCeEEEEecCCCceEEEEeC-CCCCcc---eEEEccCCCcEEEcccC-----CCCeEEEEeCC
Confidence 3678888532 235689999887655544321 122222 2333 25677765411 12468888876
Q ss_pred CCceEEecCCCCCCCcccccEEEEE-cCCEEEEEcCCCCCCCcCceEEEECCCCeeEeccCC-CCCCCCccccEEEEECC
Q 008611 332 TMTWDEIDAVGVPPSPRSDHAAAVH-AERYLLIFGGGSHAACFNDLHVLDLQTMEWSRPTQQ-GEIPTPRAGHAGVTIGE 409 (559)
Q Consensus 332 t~~W~~~~~~~~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~dv~~~d~~~~~W~~~~~~-~~~p~~R~~hs~~~~~~ 409 (559)
...-..+... ....| .++++- .++.||+.-.. .+.|+++|+....-..+... ..+ ...+++++.++
T Consensus 528 G~~~~~l~~~-~l~~P---nGlavd~~~~~LY~aD~~-----~~~I~~~d~dG~~~~~~~~~~~~~---~~P~glavd~~ 595 (699)
T 1n7d_A 528 GVDIYSLVTE-NIQWP---NGITLDLLSGRLYWVDSK-----LHSISSIDVNGGNRKTILEDEKRL---AHPFSLAVFED 595 (699)
T ss_dssp SCCCCEESCS-SCSSC---CCEEECTTTCCEEEEETT-----TTEEEEECSSSSCCEEECCCSSSC---SSCCCCEEETT
T ss_pred CCCeeEEEeC-CCCCc---cEEEEeccCCEEEEEecC-----CCeEEEEccCCCceEEEEecCCcC---CCceEeEEECC
Confidence 5433333211 11111 234443 24668887542 35689999875443333211 111 12233444433
Q ss_pred ceecceeeeeeccCCCcEEEEEcCcCCCCcccEEEEeCCCcc
Q 008611 410 NWFLGLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSHKS 451 (559)
Q Consensus 410 ~~~iG~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~~d~~~~~ 451 (559)
.||+.-. ..+.|.++++.+..
T Consensus 596 -----------------~lywtd~----~~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 596 -----------------KVFWTDI----INEAIFSANRLTGS 616 (699)
T ss_dssp -----------------EEEEECS----TTTCEEEEETTTEE
T ss_pred -----------------EEEEEeC----CCCeEEEEEccCCC
Confidence 6777642 23578888876653
No 463
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=41.97 E-value=36 Score=34.21 Aligned_cols=39 Identities=15% Similarity=0.055 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhH
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDL 554 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 554 (559)
...+.+++.++|..+.....++..|+..+...+.+++.|
T Consensus 86 skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l 124 (409)
T 1m1j_C 86 SKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQL 124 (409)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHH
Confidence 344555555555544444444444444444444444333
No 464
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=41.96 E-value=59 Score=20.00 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHH
Q 008611 525 ELESSLSKEKLQSIQLKQDLTEAE 548 (559)
Q Consensus 525 ~~~~~l~~~~~~~~~l~~~~~~~~ 548 (559)
+++.+.++...+...|+.++.-+.
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~RLk 28 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVARLK 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344444444444444444444433
No 465
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=41.77 E-value=35 Score=23.71 Aligned_cols=31 Identities=10% Similarity=0.175 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 008611 513 EHLIATLKAEKEELESSLSKEKLQSIQLKQD 543 (559)
Q Consensus 513 ~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~ 543 (559)
...+.++..+++.+..+.++.+.++..|+++
T Consensus 26 D~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 26 NEFLAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3345555555555555555555555555443
No 466
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=41.74 E-value=31 Score=22.86 Aligned_cols=13 Identities=15% Similarity=0.118 Sum_probs=5.0
Q ss_pred HHHHHhhhhhHhh
Q 008611 544 LTEAESQNTDLYK 556 (559)
Q Consensus 544 ~~~~~~~~~~~~k 556 (559)
+++.-++++.+++
T Consensus 32 L~~vt~rle~lEn 44 (47)
T 1aq5_A 32 LEAVAKRIEALEN 44 (47)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 3333333333333
No 467
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=41.55 E-value=32 Score=31.47 Aligned_cols=48 Identities=17% Similarity=0.230 Sum_probs=36.4
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHh
Q 008611 508 HPETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLY 555 (559)
Q Consensus 508 ~~~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 555 (559)
++.++...|+.|+.-++.+..+|...+++-..|+.++...+.|++.++
T Consensus 178 EI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~q 225 (242)
T 3uux_B 178 EIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLE 225 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 346666778888888888888888888888888888888877775543
No 468
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=41.51 E-value=54 Score=20.37 Aligned_cols=24 Identities=21% Similarity=0.144 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 008611 516 IATLKAEKEELESSLSKEKLQSIQ 539 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~~~~~~~ 539 (559)
+.+.+.++.+++.+|+..+++..|
T Consensus 10 LeEtkeQi~~l~~kl~~LkeEKHQ 33 (38)
T 2l5g_A 10 LEETKEQILKLEEKLLALQEEKHQ 33 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555554443
No 469
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=41.15 E-value=52 Score=19.91 Aligned_cols=25 Identities=8% Similarity=0.120 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHH
Q 008611 524 EELESSLSKEKLQSIQLKQDLTEAE 548 (559)
Q Consensus 524 ~~~~~~l~~~~~~~~~l~~~~~~~~ 548 (559)
.++|.++++.-.+...|+.+++-+.
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXARIX 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3444455555555555555555443
No 470
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=41.04 E-value=58 Score=21.06 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=11.6
Q ss_pred HhhhHHHHHHHHHhhhhhHhhh
Q 008611 536 QSIQLKQDLTEAESQNTDLYKV 557 (559)
Q Consensus 536 ~~~~l~~~~~~~~~~~~~~~ke 557 (559)
....|+.+++.+|+.++.|++.
T Consensus 32 dnanlekdianlekdianlerd 53 (56)
T 3he4_A 32 DNANLEKDIANLEKDIANLERD 53 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHh
Confidence 3344555555555555555553
No 471
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=41.01 E-value=59 Score=23.89 Aligned_cols=22 Identities=32% Similarity=0.161 Sum_probs=11.3
Q ss_pred hhhHHHHHHHHHhhhhhHhhhh
Q 008611 537 SIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 537 ~~~l~~~~~~~~~~~~~~~kel 558 (559)
+...+.++.++..+++.|+-||
T Consensus 51 l~~~k~Ei~elrr~iq~L~~el 72 (77)
T 3trt_A 51 LRQAKQESTEYRRQVQSLTMEV 72 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555555555555554
No 472
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=40.59 E-value=51 Score=28.46 Aligned_cols=36 Identities=14% Similarity=0.068 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhh
Q 008611 522 EKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKV 557 (559)
Q Consensus 522 e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ke 557 (559)
.+..++..+........+.+.+...+..++..++||
T Consensus 98 ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe 133 (168)
T 3o0z_A 98 RITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKE 133 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333444444444444444443
No 473
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=40.21 E-value=1.2e+02 Score=23.22 Aligned_cols=18 Identities=11% Similarity=0.254 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008611 516 IATLKAEKEELESSLSKE 533 (559)
Q Consensus 516 ~~~l~~e~~~~~~~l~~~ 533 (559)
++.-..|++.+++.+-+.
T Consensus 45 i~~Qi~Emq~Ir~tvyeL 62 (92)
T 3vp9_A 45 MNQQLAEMQQIRNTVYER 62 (92)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444443333
No 474
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=40.15 E-value=51 Score=22.44 Aligned_cols=43 Identities=12% Similarity=0.159 Sum_probs=31.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhh
Q 008611 510 ETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNT 552 (559)
Q Consensus 510 ~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~ 552 (559)
......++.|..+..+++.+....+.+++.-+.+-.-+.+||.
T Consensus 7 ~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~RlD 49 (52)
T 1jcd_A 7 DQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRAD 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4445567778888888888888888877777777777777764
No 475
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=39.99 E-value=36 Score=25.68 Aligned_cols=39 Identities=13% Similarity=0.075 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhh
Q 008611 515 LIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKV 557 (559)
Q Consensus 515 ~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ke 557 (559)
.|..|+++.+ ++.+++.+..+|+.....+-.+++|||.+
T Consensus 40 YI~~Lq~e~~----r~~e~e~r~k~le~~n~~l~~riqELE~q 78 (83)
T 4ath_A 40 YIRKLQREQQ----RAKDLENRQKKLEHANRHLLLRVQELEMQ 78 (83)
T ss_dssp HHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 3555554443 34444455555666666666666666654
No 476
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=39.95 E-value=69 Score=20.15 Aligned_cols=41 Identities=20% Similarity=0.225 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhh
Q 008611 512 TEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNT 552 (559)
Q Consensus 512 ~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~ 552 (559)
.+..+..|..|-+.+..+.-...--+.-|+.+++.+++.++
T Consensus 8 lenevaslenenetlkkknlhkkdliaylekeianlrkkie 48 (49)
T 3he5_A 8 LENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHhc
Confidence 34556677766666665544444445556666666666553
No 477
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=39.88 E-value=47 Score=25.56 Aligned_cols=25 Identities=16% Similarity=0.118 Sum_probs=11.4
Q ss_pred HHHHHHHhhhHHHHHHHHHhhhhhH
Q 008611 530 LSKEKLQSIQLKQDLTEAESQNTDL 554 (559)
Q Consensus 530 l~~~~~~~~~l~~~~~~~~~~~~~~ 554 (559)
.+..+.+.++|+.++..+++++..|
T Consensus 63 REkl~~eKe~L~~ql~~lq~q~~~L 87 (94)
T 3jsv_C 63 REKLVEKKEYLQEQLEQLQREFNKL 87 (94)
T ss_dssp HHHHHHTTSHHHHHHHHHHHTTC--
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555554444
No 478
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=39.72 E-value=29 Score=40.34 Aligned_cols=8 Identities=13% Similarity=0.219 Sum_probs=3.3
Q ss_pred CCCHHHHH
Q 008611 84 NMATTEAM 91 (559)
Q Consensus 84 ~~s~~~a~ 91 (559)
|++.+|-+
T Consensus 342 g~~~~e~~ 349 (1184)
T 1i84_S 342 GFTEEEQT 349 (1184)
T ss_dssp TCCHHHHH
T ss_pred eeCHHHHH
Confidence 34444433
No 479
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A
Probab=39.53 E-value=1.9e+02 Score=30.76 Aligned_cols=155 Identities=15% Similarity=0.161 Sum_probs=74.3
Q ss_pred eEEEECCEEEEEccCCCCcccCcEEEEEcCCC-eEEEeeeccccCCCCCCCCCCCCCCccceeEE-eCCEEEEEeccCCC
Q 008611 190 GAAVVQDKMYIYGGNHNGRYLSDMHILDLRSW-AWSKIQAKAVAESTESPSPALLTPCAGHSLIP-WENKLLSIAGHTKD 267 (559)
Q Consensus 190 ~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~-~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~ 267 (559)
+++.+.+++|+|=| +.+|+++.... .......... -+..| .....+... .++++|+|=|.
T Consensus 448 Ait~~rg~~yfFKg-------~~yWr~~~~~~~~~~P~~Is~~-------wp~LP-~~IDAA~~~~~~~k~yFFkG~--- 509 (631)
T 1ck7_A 448 GIAQIRGEIFFFKD-------RFIWRTVTPRDKPMGPLLVATF-------WPELP-EKIDAVYEAPQEEKAVFFAGN--- 509 (631)
T ss_dssp EEEECSSSEEEECS-------SEEEEESCTTSCCEEEEEGGGT-------CTTSC-SSCSBCCEETTTTEEEEEETT---
T ss_pred eeEecCCcEEEEcC-------CEEEEEcCCCCCCCCceecccc-------CCCCC-ccceEEEEECCCCEEEEEecC---
Confidence 34456789999987 56788876542 2222111110 01122 222322222 25789999763
Q ss_pred CCCcceEEEEECCCC--eE-EEeccCCCCCCCccceEEEE---ECCEEEEEcCcCCCCCCcCceEEEECCCCceEE----
Q 008611 268 PSEIIQVKVFDLQTC--SW-STLKTYGKPPVSRGGQSVTL---VGTSLVIFGGEDAKRSLLNDLHILDLETMTWDE---- 337 (559)
Q Consensus 268 ~~~~~~v~~yd~~t~--~W-~~~~~~g~~p~~r~~~~~~~---~~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~---- 337 (559)
..|+|+..+. .+ ..|...| .|......-++. .++++|+|-| +..|+||..+.+-..
T Consensus 510 -----~yWry~~~~l~~GYPk~Is~~G-~P~~~~~IDAAf~~~~~gktYFFkG--------~~ywryd~~~~~vd~gYPk 575 (631)
T 1ck7_A 510 -----EYWIYSASTLERGYPKPLTSLG-LPPDVQRVDAAFNWSKNKKTYIFAG--------DKFWRYNEVKKKMDPGFPK 575 (631)
T ss_dssp -----EEEEEETTEECTTCCEEGGGGT-CCTTCCCCCBCCCCTTTCEEEEEET--------TEEEEEETTTTEECTTCCE
T ss_pred -----EEEEECCCccccCCCccchhcC-CCCCCCcceeEEEecCCCeEEEEEC--------CEEEEEcCCcccccCCCCc
Confidence 5888885321 00 1222112 221111111222 2578999976 358899976543211
Q ss_pred -ecCCCCCCCcccccEEEEEc-CCEEEEEcCCCCCCCcCceEEEECCCC
Q 008611 338 -IDAVGVPPSPRSDHAAAVHA-ERYLLIFGGGSHAACFNDLHVLDLQTM 384 (559)
Q Consensus 338 -~~~~~~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~dv~~~d~~~~ 384 (559)
+.. .-+..+..-.++.... ++.+|+|-|. ..|+||..+.
T Consensus 576 ~i~~-~w~G~p~~iDAAf~~~~~g~~YFFkG~-------~Ywr~d~~~~ 616 (631)
T 1ck7_A 576 LIAD-AWNAIPDNLDAVVDLQGGGHSYFFKGA-------YYLKLENQSL 616 (631)
T ss_dssp ETTT-SCSSCCTTCCEEECCTTSCBCEEEETT-------EEECCBTTBT
T ss_pred chHh-hcCCCCCCCcEeEEEcCCCeEEEEECC-------EEEEEeCccc
Confidence 110 0011122223333332 4678888774 3778876543
No 480
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=39.35 E-value=1.6e+02 Score=29.58 Aligned_cols=121 Identities=16% Similarity=0.113 Sum_probs=62.8
Q ss_pred CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEe-CCEEEEEeccC---CCCCC
Q 008611 195 QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPW-ENKLLSIAGHT---KDPSE 270 (559)
Q Consensus 195 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~---~~~~~ 270 (559)
+.++||.-....... +.+.++|+.+++-...-+.+ ..-+.+..- +.++||.--.. ..+..
T Consensus 84 ~~~vyV~n~~~~~~~-~~VsVID~~t~~vv~~I~vG---------------~~Pgia~SpDgk~lyVan~~~~~~~~G~~ 147 (426)
T 3c75_H 84 ARRVYIQDPAHFAAI-TQQFVIDGSTGRILGMTDGG---------------FLPHPVAAEDGSFFAQASTVFERIARGKR 147 (426)
T ss_dssp TTEEEEEECTTTCSS-EEEEEEETTTTEEEEEEEEC---------------SSCEEEECTTSSCEEEEEEEEEETTEEEE
T ss_pred CCEEEEECCCcCCCC-CeEEEEECCCCEEEEEEECC---------------CCCceEECCCCCEEEEEeccccccccCCC
Confidence 466777754221111 78999999998765433322 112222222 44677764210 01123
Q ss_pred cceEEEEECCCCeEEE-eccCCCCC--CCccceEEEEE--CCEEEEEcCcCCCCCCcCceEEEECCCCceE
Q 008611 271 IIQVKVFDLQTCSWST-LKTYGKPP--VSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWD 336 (559)
Q Consensus 271 ~~~v~~yd~~t~~W~~-~~~~g~~p--~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~ 336 (559)
.+.+.+||+.+++-.. +...+... ....-+.+++. +.++|+..-. ..+.+.++|+.+.+-.
T Consensus 148 ~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~-----~~~~VsVID~~t~kvv 213 (426)
T 3c75_H 148 TDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFS-----PAPAVGVVDLEGKTFD 213 (426)
T ss_dssp EEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECS-----SSCEEEEEETTTTEEE
T ss_pred CCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecC-----CCCeEEEEECCCCeEE
Confidence 4689999999987432 32210000 00111223332 4478886421 1367999999887653
No 481
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=39.02 E-value=49 Score=18.22 Aligned_cols=16 Identities=38% Similarity=0.399 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 008611 518 TLKAEKEELESSLSKE 533 (559)
Q Consensus 518 ~l~~e~~~~~~~l~~~ 533 (559)
+|-+|++.+++.|...
T Consensus 5 elykeledlqerlrkl 20 (27)
T 3twe_A 5 ELYKELEDLQERLRKL 20 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555544443
No 482
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=38.88 E-value=28 Score=37.47 Aligned_cols=70 Identities=11% Similarity=0.109 Sum_probs=48.2
Q ss_pred cCCCChh-hHHHHhhheeeeecCCCCCCC----------CC-CCCh-hhhhhH-----HHHhcC----CCCCHHHHHHHH
Q 008611 37 TSKFSND-SALLLYALYQQATVGPCNVPK----------PS-SWSP-VEQSKW-----KSWQGL----GNMATTEAMRLF 94 (559)
Q Consensus 37 ~~~~~~~-~~l~ly~l~kqa~~g~~~~~~----------p~-~~~~-~~~~k~-----~aw~~~----~~~s~~~a~~~y 94 (559)
.-+.+.| +.+.|=||.-||..|+++... |. ...- ....+| .+|+++ .|||+.+|+.+|
T Consensus 385 rlpc~~E~~a~~LAAl~~Qae~Gd~~~~~~~~~~L~~~lP~~~l~~~~~~~~w~~~I~~~hkk~~~~~~g~s~~eAk~~y 464 (655)
T 3pvl_A 385 EYRCEKEDDLAELASQQYFVDYGSEMILERLLSLVPTYIPDREITPLKNLEKWAQLAIAAHKKGIYAQRRTDSQKVKEDV 464 (655)
T ss_dssp SSCCSSHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHSCGGGCCSSSCHHHHHHHHHHHHHHHHHTTCSSCHHHHHHHH
T ss_pred ccCCChHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhCCHHHHhccCCHHHHHHHHHHHHHhhhccccCCCHHHHHHHH
Confidence 4456655 899999999999999986421 21 1111 123334 467777 999999999999
Q ss_pred HHHHHHhCCCcc
Q 008611 95 VKILEEEDPGWY 106 (559)
Q Consensus 95 v~~~~~~~~~~~ 106 (559)
++++..-.|.|.
T Consensus 465 L~~a~~~lp~YG 476 (655)
T 3pvl_A 465 VNYARFKWPLLF 476 (655)
T ss_dssp HHHHHHHCTTTS
T ss_pred HHHHHHhccccC
Confidence 999954456654
No 483
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=38.73 E-value=21 Score=36.86 Aligned_cols=25 Identities=12% Similarity=0.117 Sum_probs=13.9
Q ss_pred HHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 534 KLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 534 ~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
.++..+|+.++.+++.++.+++.+|
T Consensus 77 ~~~~~~l~~~i~~le~~~~~~~~~~ 101 (485)
T 3qne_A 77 IAEKEKLSNEKKEIIEKEAEADKNL 101 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566666666665555554
No 484
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=38.53 E-value=3e+02 Score=27.36 Aligned_cols=153 Identities=7% Similarity=0.027 Sum_probs=0.0
Q ss_pred eeEEEE---CCEEEEEccCCCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCccceeEEeCCE-EEEEecc
Q 008611 189 HGAAVV---QDKMYIYGGNHNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCAGHSLIPWENK-LLSIAGH 264 (559)
Q Consensus 189 ~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~-lyv~GG~ 264 (559)
..+++. ++.||+.--. ..+.+||+.++....+.. ...+-.+.++..++. ||+....
T Consensus 140 ~~lavdp~~~g~Lyv~d~~------~~I~~id~~~~~v~~~~~--------------~~~~P~~ia~d~~G~~lyvad~~ 199 (430)
T 3tc9_A 140 VWLSFDPKNHNHLYLVGEQ------HPTRLIDFEKEYVSTVYS--------------GLSKVRTICWTHEADSMIITNDQ 199 (430)
T ss_dssp CEEEEETTEEEEEEEEEBT------EEEEEEETTTTEEEEEEC--------------CCSCEEEEEECTTSSEEEEEECC
T ss_pred CEEEECCCCCCeEEEEeCC------CcEEEEECCCCEEEEEec--------------CCCCcceEEEeCCCCEEEEEeCC
Q ss_pred CCCCCCcceEEEEECCCCeEEEeccCCCCCCCccceEEEEE--CCEEEEEcCcCCCCCCcCceEEEECCCCceEEecCCC
Q 008611 265 TKDPSEIIQVKVFDLQTCSWSTLKTYGKPPVSRGGQSVTLV--GTSLVIFGGEDAKRSLLNDLHILDLETMTWDEIDAVG 342 (559)
Q Consensus 265 ~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~ 342 (559)
... ....+..++ ....|.... .++....-+.+++. ++.||+.--. .+.|++|++.+..-..+...+
T Consensus 200 ~~~--~~~~v~~~~-~~g~~~~~~---~l~~~~~p~giavdp~~g~lyv~d~~------~~~V~~~~~~~~~~~~~~~~~ 267 (430)
T 3tc9_A 200 NNN--DRPNNYILT-RESGFKVIT---ELTKGQNCNGAETHPINGELYFNSWN------AGQVFRYDFTTQETTPLFTIQ 267 (430)
T ss_dssp SCT--TSEEEEEEE-GGGTSCSEE---EEEECSSCCCEEECTTTCCEEEEETT------TTEEEEEETTTTEEEEEEECS
T ss_pred CCc--ccceEEEEe-CCCceeeee---eeccCCCceEEEEeCCCCEEEEEECC------CCEEEEEECCCCcEEEEEEcC
Q ss_pred CCCCcccccEEEEEcCCE-EEEEcCCCCCCCcCceEEEEC
Q 008611 343 VPPSPRSDHAAAVHAERY-LLIFGGGSHAACFNDLHVLDL 381 (559)
Q Consensus 343 ~~p~~r~~~~~~~~~~~~-l~v~GG~~~~~~~~dv~~~d~ 381 (559)
....|+ .+++..++. ||+.--.. +.|++|+.
T Consensus 268 ~~~~P~---gia~~pdG~~lyv~d~~~-----~~I~~~~~ 299 (430)
T 3tc9_A 268 DSGWEF---HIQFHPSGNYAYIVVVNQ-----HYILRSDY 299 (430)
T ss_dssp SSSCCE---EEEECTTSSEEEEEETTT-----TEEEEEEE
T ss_pred CCCcce---eEEEcCCCCEEEEEECCC-----CEEEEEeC
No 485
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=38.25 E-value=66 Score=25.14 Aligned_cols=37 Identities=14% Similarity=0.188 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhH
Q 008611 518 TLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDL 554 (559)
Q Consensus 518 ~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 554 (559)
++..+.+.++++++....++.+++.++.+.+.-+.+|
T Consensus 5 ~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL 41 (107)
T 1fxk_A 5 HQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEEL 41 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555555544444333
No 486
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=38.07 E-value=93 Score=21.15 Aligned_cols=27 Identities=19% Similarity=0.379 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 008611 515 LIATLKAEKEELESSLSKEKLQSIQLK 541 (559)
Q Consensus 515 ~~~~l~~e~~~~~~~l~~~~~~~~~l~ 541 (559)
.+++|+++...+...++++|+.-..|+
T Consensus 18 qV~eL~qe~k~m~k~lEeEqkARk~LE 44 (56)
T 2w6b_A 18 EVQELRQDNKKMKKSLEEEQRARKDLE 44 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555555444333
No 487
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=38.05 E-value=88 Score=20.83 Aligned_cols=33 Identities=21% Similarity=0.302 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhh
Q 008611 525 ELESSLSKEKLQSIQLKQDLTEAESQNTDLYKV 557 (559)
Q Consensus 525 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ke 557 (559)
++-+|.+....++..|++++++-..++..||.|
T Consensus 7 QL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~e 39 (54)
T 1deb_A 7 QLLKQVEALKMENSNLRQELEDNSNHLTKLETE 39 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhh
Confidence 344455555666666666666666666555543
No 488
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=37.81 E-value=53 Score=24.47 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHH
Q 008611 518 TLKAEKEELESSLSKEKLQSIQLK 541 (559)
Q Consensus 518 ~l~~e~~~~~~~l~~~~~~~~~l~ 541 (559)
.|.+++++++..+...++++..|+
T Consensus 38 ~Lh~~ie~~~eEi~~LkeEN~~L~ 61 (79)
T 2zxx_A 38 KLHKEIEQKDSEIARLRKENKDLA 61 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 489
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=37.77 E-value=1e+02 Score=21.38 Aligned_cols=38 Identities=16% Similarity=0.148 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHh
Q 008611 518 TLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLY 555 (559)
Q Consensus 518 ~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 555 (559)
++++-+..-|.++++.-+-+..|.+++.-++..+.+|.
T Consensus 17 evK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQ 54 (63)
T 2w6a_A 17 ELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQ 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHH
Confidence 34555555555555554444445555554544444443
No 490
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=37.75 E-value=51 Score=20.64 Aligned_cols=28 Identities=32% Similarity=0.337 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 008611 514 HLIATLKAEKEELESSLSKEKLQSIQLK 541 (559)
Q Consensus 514 ~~~~~l~~e~~~~~~~l~~~~~~~~~l~ 541 (559)
+++..|..|++.++.++......++.|+
T Consensus 20 eelaaleselqalekklaalksklqalk 47 (48)
T 1g6u_A 20 EELAALESELQALEKKLAALKSKLQALK 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 491
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=37.73 E-value=35 Score=43.68 Aligned_cols=50 Identities=10% Similarity=0.118 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhhC
Q 008611 510 ETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVIA 559 (559)
Q Consensus 510 ~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kelq 559 (559)
+.+++.++++++++++.+++|++.+.++.+++.++++++.+++++.+|.|
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~ 2059 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETE 2059 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 492
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=37.69 E-value=1.3e+02 Score=22.76 Aligned_cols=48 Identities=23% Similarity=0.127 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 511 TTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 511 ~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
..+..+..|+..++.-....++.-.|..+|+.-+...+.+.++.++.|
T Consensus 1 slan~La~le~sLe~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i 48 (101)
T 1d7m_A 1 EMANRLAGLENSLESEKVSREQLIKQKDQLNSLLASLESEGAEREKRL 48 (101)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHhHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 493
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=37.63 E-value=25 Score=35.42 Aligned_cols=51 Identities=14% Similarity=0.108 Sum_probs=0.0
Q ss_pred cCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHh
Q 008611 505 ISKHPETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLY 555 (559)
Q Consensus 505 ~~~~~~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 555 (559)
+.+++++.++...+|++++++++..+++.++++.+.+.....+..+++++.
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elk 58 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELR 58 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
No 494
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=37.08 E-value=2.9e+02 Score=26.50 Aligned_cols=212 Identities=12% Similarity=0.135 Sum_probs=0.0
Q ss_pred CCEEEEEccC----CCCcccCcEEEEEcCCCeEEEeeeccccCCCCCCCCCCCCCCc------cceeEEeCCEEEEEecc
Q 008611 195 QDKMYIYGGN----HNGRYLSDMHILDLRSWAWSKIQAKAVAESTESPSPALLTPCA------GHSLIPWENKLLSIAGH 264 (559)
Q Consensus 195 ~~~lyv~GG~----~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~~p~~r~------~~~~~~~~~~lyv~GG~ 264 (559)
+..+|+..-. ..+...+.+.+||+.+.+-..--+.. ..+. .+.++.-+++.+++...
T Consensus 61 g~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~-------------~~~~~~g~~p~~i~~spdg~~l~v~n~ 127 (361)
T 2oiz_A 61 GKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLP-------------PKRVQGLNYDGLFRQTTDGKFIVLQNA 127 (361)
T ss_dssp SSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEEC-------------TTBCCBCCCGGGEEECTTSSEEEEEEE
T ss_pred CCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcC-------------ccccccCCCcceEEECCCCCEEEEECC
Q ss_pred CCCCCCcceEEEEECCCCeEEEe-ccCCCC------CCCccceEEEEECCEEEEEcCcCCCCCC----------------
Q 008611 265 TKDPSEIIQVKVFDLQTCSWSTL-KTYGKP------PVSRGGQSVTLVGTSLVIFGGEDAKRSL---------------- 321 (559)
Q Consensus 265 ~~~~~~~~~v~~yd~~t~~W~~~-~~~g~~------p~~r~~~~~~~~~~~lyv~GG~~~~~~~---------------- 321 (559)
... +.+.+||+.+++-... -..+.. |.....+.+..-++++.++.-.......
T Consensus 128 ~~~----~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~ 203 (361)
T 2oiz_A 128 SPA----TSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI 203 (361)
T ss_dssp SSS----EEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB
T ss_pred CCC----CeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce
Q ss_pred ----------------cCceEEEECCCCceEEecCCCCCC--------CcccccEEEEEcC-CEEEEEcC-----CCCCC
Q 008611 322 ----------------LNDLHILDLETMTWDEIDAVGVPP--------SPRSDHAAAVHAE-RYLLIFGG-----GSHAA 371 (559)
Q Consensus 322 ----------------~~~~~~yd~~t~~W~~~~~~~~~p--------~~r~~~~~~~~~~-~~l~v~GG-----~~~~~ 371 (559)
.+.++.+|+..+.-..+....... .|...+.+++..+ +++|+... ..+..
T Consensus 204 ~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~ 283 (361)
T 2oiz_A 204 FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKF 283 (361)
T ss_dssp CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTC
T ss_pred EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccC
Q ss_pred CcCceEEEECCCCeeEeccCCCCCCCCccccEEEEECCceecceeeeeeccCCCcEEEEEcCcCCCCcccEEEEeCCCc
Q 008611 372 CFNDLHVLDLQTMEWSRPTQQGEIPTPRAGHAGVTIGENWFLGLSLVVSSYSGEDVIVAFGGYNGRYNNEVHVLKPSHK 450 (559)
Q Consensus 372 ~~~dv~~~d~~~~~W~~~~~~~~~p~~R~~hs~~~~~~~~~iG~s~~~~~~~~~~~l~v~GG~~~~~~~~v~~~d~~~~ 450 (559)
..+.++++|+.+.+-.. .++.+. .+++++-.+ +.+||+.++ +.|.+||+.+.
T Consensus 284 ~~~~v~viD~~t~~~v~-----~i~~~~-p~~ia~spd---------------g~~l~v~n~------~~v~v~D~~t~ 335 (361)
T 2oiz_A 284 PAAEIWVMDTKTKQRVA-----RIPGRD-ALSMTIDQQ---------------RNLMLTLDG------GNVNVYDISQP 335 (361)
T ss_dssp CCSEEEEEETTTTEEEE-----EEECTT-CCEEEEETT---------------TTEEEEECS------SCEEEEECSSS
T ss_pred CCceEEEEECCCCcEEE-----EEecCC-eeEEEECCC---------------CCEEEEeCC------CeEEEEECCCC
No 495
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=36.60 E-value=77 Score=24.26 Aligned_cols=46 Identities=13% Similarity=0.178 Sum_probs=0.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhH
Q 008611 509 PETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDL 554 (559)
Q Consensus 509 ~~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 554 (559)
++....-+....+.+++-..++...|+|+.+=.+++.+++.+.++|
T Consensus 43 I~~NS~aiaanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaL 88 (114)
T 2xzr_A 43 IEKNSKAIAANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEI 88 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhchHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
No 496
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=36.31 E-value=53 Score=33.57 Aligned_cols=48 Identities=15% Similarity=0.210 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhh-----------HHHHHHHHHhhhhhHhhhh
Q 008611 511 TTEHLIATLKAEKEELESSLSKEKLQSIQ-----------LKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 511 ~~~~~~~~l~~e~~~~~~~l~~~~~~~~~-----------l~~~~~~~~~~~~~~~kel 558 (559)
+.++..+.|++++.+++..+.+.+.|... |+.++.+.+++++|+|-|+
T Consensus 394 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (471)
T 3mq9_A 394 EARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEI 452 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=36.24 E-value=94 Score=24.00 Aligned_cols=42 Identities=24% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhhhh
Q 008611 517 ATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYKVI 558 (559)
Q Consensus 517 ~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~kel 558 (559)
++|-++--+++..++..+.+...|++.-...-.++.+|+.|+
T Consensus 33 qELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~ev 74 (104)
T 3s9g_A 33 QELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELEL 74 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHH
No 498
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=36.17 E-value=70 Score=22.10 Aligned_cols=46 Identities=9% Similarity=0.028 Sum_probs=0.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhH
Q 008611 509 PETTEHLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDL 554 (559)
Q Consensus 509 ~~~~~~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 554 (559)
+.+.......++.++++...++.+..+.+.....++.+++.++..+
T Consensus 14 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~~y 59 (60)
T 3htk_A 14 VEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNEYY 59 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 499
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=36.13 E-value=45 Score=20.24 Aligned_cols=31 Identities=6% Similarity=0.093 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhhhh
Q 008611 523 KEELESSLSKEKLQSIQLKQDLTEAESQNTD 553 (559)
Q Consensus 523 ~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~ 553 (559)
+.++|.+.++.-.++..|+.++.-+...+.+
T Consensus 3 M~QLEdKVEeLl~~n~~Le~EV~RLk~LL~~ 33 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENELARIKKLLGE 33 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHcc
No 500
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=36.13 E-value=47 Score=33.95 Aligned_cols=43 Identities=23% Similarity=0.311 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhHhh
Q 008611 514 HLIATLKAEKEELESSLSKEKLQSIQLKQDLTEAESQNTDLYK 556 (559)
Q Consensus 514 ~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~k 556 (559)
.+..+|.+++.+-+.++++.+-|+.+|.++|++++.+++++.+
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (471)
T 3mq9_A 429 ALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRR 471 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Done!