Query 008612
Match_columns 559
No_of_seqs 242 out of 681
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 07:37:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008612.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008612hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fq3_A Transcription regulator 100.0 7.3E-42 2.5E-46 297.8 10.0 93 17-109 11-103 (104)
2 2dce_A KIAA1915 protein; swirm 100.0 5.7E-41 1.9E-45 296.3 9.2 95 15-110 11-107 (111)
3 2yus_A SWI/SNF-related matrix- 99.6 6E-16 2.1E-20 129.0 9.2 59 251-309 17-75 (79)
4 2elk_A SPCC24B10.08C protein; 99.3 1.3E-12 4.6E-17 102.4 6.0 48 252-299 9-58 (58)
5 1x41_A Transcriptional adaptor 99.2 1.1E-11 3.9E-16 97.7 6.1 49 251-299 7-56 (60)
6 2cqr_A RSGI RUH-043, DNAJ homo 99.1 7.4E-11 2.5E-15 96.7 5.6 62 236-301 5-70 (73)
7 1gvd_A MYB proto-oncogene prot 99.0 6E-10 2.1E-14 85.0 6.2 44 252-295 3-47 (52)
8 1guu_A C-MYB, MYB proto-oncoge 99.0 5.2E-10 1.8E-14 85.4 5.6 44 252-295 3-47 (52)
9 1wgx_A KIAA1903 protein; MYB D 98.9 9.5E-10 3.3E-14 89.9 6.3 46 251-296 7-56 (73)
10 2d9a_A B-MYB, MYB-related prot 98.9 1.4E-09 4.7E-14 85.5 7.0 45 251-295 7-52 (60)
11 1w0t_A Telomeric repeat bindin 98.9 1E-09 3.5E-14 84.2 5.8 44 252-295 2-48 (53)
12 2yum_A ZZZ3 protein, zinc fing 98.9 1.1E-09 3.7E-14 89.9 5.0 45 251-295 7-57 (75)
13 2dim_A Cell division cycle 5-l 98.9 2.6E-09 8.7E-14 86.5 7.1 45 251-295 8-53 (70)
14 2cu7_A KIAA1915 protein; nucle 98.9 1.9E-09 6.6E-14 87.8 6.4 45 251-295 8-52 (72)
15 3sjm_A Telomeric repeat-bindin 98.8 2.9E-09 9.8E-14 85.1 5.8 44 252-295 11-57 (64)
16 1ity_A TRF1; helix-turn-helix, 98.8 6.5E-09 2.2E-13 83.9 6.7 45 251-295 9-56 (69)
17 2eqr_A N-COR1, N-COR, nuclear 98.8 1.3E-08 4.5E-13 80.4 6.7 44 252-295 12-55 (61)
18 2din_A Cell division cycle 5-l 98.7 1.2E-08 4.3E-13 81.5 5.9 44 251-295 8-51 (66)
19 2cjj_A Radialis; plant develop 98.7 1.6E-08 5.3E-13 86.6 5.2 46 251-296 7-56 (93)
20 2ltp_A Nuclear receptor corepr 98.1 3.6E-09 1.2E-13 89.9 0.0 45 251-295 15-59 (89)
21 2llk_A Cyclin-D-binding MYB-li 98.6 5E-08 1.7E-12 79.9 6.3 45 251-296 22-66 (73)
22 2k9n_A MYB24; R2R3 domain, DNA 98.6 4.4E-08 1.5E-12 85.6 6.0 43 253-295 2-45 (107)
23 1gv2_A C-MYB, MYB proto-oncoge 98.6 6.4E-08 2.2E-12 84.0 6.2 44 252-295 4-48 (105)
24 3osg_A MYB21; transcription-DN 98.6 6.7E-08 2.3E-12 86.9 6.1 45 251-295 10-54 (126)
25 2iw5_B Protein corest, REST co 98.5 1.1E-07 3.8E-12 92.7 6.0 45 251-295 132-176 (235)
26 1h8a_C AMV V-MYB, MYB transfor 98.5 2E-07 6.8E-12 83.9 7.1 45 251-295 26-71 (128)
27 2k9n_A MYB24; R2R3 domain, DNA 98.5 1.5E-07 5.1E-12 82.2 5.9 44 252-295 53-96 (107)
28 1gv2_A C-MYB, MYB proto-oncoge 98.5 1.5E-07 5.1E-12 81.7 5.8 44 252-295 56-99 (105)
29 3zqc_A MYB3; transcription-DNA 98.5 8.7E-08 3E-12 86.6 4.3 44 252-295 2-46 (131)
30 3osg_A MYB21; transcription-DN 98.5 1.5E-07 5.1E-12 84.6 5.8 44 252-295 62-105 (126)
31 2ckx_A NGTRF1, telomere bindin 98.5 1.6E-07 5.6E-12 78.7 5.6 43 253-295 1-48 (83)
32 2z3y_A Lysine-specific histone 98.5 9.5E-08 3.2E-12 107.5 5.3 87 22-110 8-98 (662)
33 4gut_A Lysine-specific histone 98.4 3.3E-07 1.1E-11 105.1 9.6 88 16-109 216-322 (776)
34 2yqk_A Arginine-glutamic acid 98.4 4.4E-07 1.5E-11 72.1 6.9 44 251-294 8-52 (63)
35 1h8a_C AMV V-MYB, MYB transfor 98.4 4.3E-07 1.5E-11 81.7 6.9 45 252-296 79-123 (128)
36 3zqc_A MYB3; transcription-DNA 98.4 4.4E-07 1.5E-11 82.0 6.3 44 252-295 54-97 (131)
37 2xag_B REST corepressor 1; ami 98.2 7.8E-07 2.7E-11 95.9 6.0 45 251-295 379-423 (482)
38 2cqq_A RSGI RUH-037, DNAJ homo 98.2 1.2E-06 4.2E-11 71.4 5.2 49 251-301 7-59 (72)
39 2crg_A Metastasis associated p 98.2 1.9E-06 6.4E-11 69.9 6.0 44 252-295 8-52 (70)
40 1h89_C C-MYB, MYB proto-oncoge 98.2 2.6E-06 8.9E-11 79.3 6.8 44 252-295 58-102 (159)
41 2roh_A RTBP1, telomere binding 98.1 1.8E-06 6.3E-11 77.2 5.4 44 252-295 31-79 (122)
42 1h89_C C-MYB, MYB proto-oncoge 98.1 2.8E-06 9.6E-11 79.0 6.7 46 251-296 109-154 (159)
43 2aje_A Telomere repeat-binding 98.1 1.9E-06 6.5E-11 75.2 4.9 45 251-295 12-61 (105)
44 4eef_G F-HB80.4, designed hema 98.1 4.7E-07 1.6E-11 73.6 0.3 42 252-293 20-65 (74)
45 4a69_C Nuclear receptor corepr 98.1 4E-06 1.4E-10 71.8 6.1 43 252-294 43-85 (94)
46 2juh_A Telomere binding protei 98.0 2.8E-06 9.5E-11 75.9 4.1 45 251-295 16-65 (121)
47 2e5r_A Dystrobrevin alpha; ZZ 97.9 1.1E-05 3.6E-10 64.2 4.8 48 196-243 12-61 (63)
48 1x58_A Hypothetical protein 49 97.8 2.1E-05 7.2E-10 62.1 5.0 46 251-296 7-55 (62)
49 2dip_A Zinc finger SWIM domain 97.7 8.3E-06 2.8E-10 70.3 1.9 57 193-259 29-86 (98)
50 2xag_A Lysine-specific histone 97.6 4E-05 1.4E-09 88.8 5.9 87 22-110 179-269 (852)
51 2fc7_A ZZZ3 protein; structure 97.5 8.3E-05 2.9E-09 62.0 5.0 54 193-246 19-77 (82)
52 1ign_A Protein (RAP1); RAP1,ye 97.4 8.7E-05 3E-09 73.1 4.6 44 252-295 8-57 (246)
53 1tot_A CREB-binding protein; z 97.1 0.0002 6.7E-09 54.7 2.4 43 195-243 6-48 (52)
54 3hm5_A DNA methyltransferase 1 96.1 0.0079 2.7E-07 51.2 5.5 43 253-295 31-78 (93)
55 1fex_A TRF2-interacting telome 96.0 0.0059 2E-07 47.6 4.1 44 252-295 2-55 (59)
56 2cuj_A Transcriptional adaptor 95.9 0.018 6.1E-07 50.3 7.4 70 27-104 37-106 (108)
57 2aqe_A Transcriptional adaptor 95.9 0.015 5.1E-07 49.2 6.6 70 27-104 19-88 (90)
58 2ebi_A DNA binding protein GT- 95.8 0.0038 1.3E-07 52.0 2.5 45 252-296 4-62 (86)
59 1ug2_A 2610100B20RIK gene prod 95.8 0.01 3.5E-07 50.0 5.0 44 253-296 34-80 (95)
60 2elj_A Transcriptional adapter 95.4 0.032 1.1E-06 47.0 6.8 70 27-103 19-88 (88)
61 2xag_B REST corepressor 1; ami 95.2 0.0034 1.2E-07 67.8 0.0 51 252-302 189-239 (482)
62 1ofc_X ISWI protein; nuclear p 95.0 0.021 7.1E-07 58.4 5.3 41 253-293 111-152 (304)
63 2lr8_A CAsp8-associated protei 93.2 0.0083 2.8E-07 47.9 0.0 43 253-296 15-60 (70)
64 4iej_A DNA methyltransferase 1 92.5 0.17 5.8E-06 42.9 5.4 44 252-295 30-78 (93)
65 2xb0_X Chromo domain-containin 91.4 0.12 4.1E-06 52.1 3.8 30 251-280 167-197 (270)
66 4b4c_A Chromodomain-helicase-D 91.1 0.21 7.1E-06 47.8 5.0 29 252-280 134-163 (211)
67 1irz_A ARR10-B; helix-turn-hel 87.6 0.95 3.3E-05 35.8 5.5 42 252-293 7-53 (64)
68 4b4c_A Chromodomain-helicase-D 86.6 0.7 2.4E-05 44.1 5.1 42 252-293 7-53 (211)
69 2y9y_A Imitation switch protei 82.5 1.3 4.5E-05 46.4 5.3 42 253-295 124-167 (374)
70 1ofc_X ISWI protein; nuclear p 80.5 1.1 3.8E-05 45.7 3.9 46 251-296 211-272 (304)
71 1f5n_A Interferon-induced guan 69.7 36 0.0012 37.6 12.7 59 493-554 507-565 (592)
72 2d8v_A Zinc finger FYVE domain 61.7 12 0.00041 29.6 4.9 45 195-242 8-52 (67)
73 2fu4_A Ferric uptake regulatio 57.9 8.4 0.00029 30.5 3.6 50 58-107 18-72 (83)
74 3q8t_A Beclin-1; autophagy, AT 57.5 84 0.0029 26.3 11.6 46 501-546 35-80 (96)
75 2heo_A Z-DNA binding protein 1 57.3 12 0.0004 29.0 4.3 52 52-104 5-56 (67)
76 2y9y_A Imitation switch protei 56.4 9.8 0.00033 39.8 4.7 46 251-296 227-288 (374)
77 2htj_A P fimbrial regulatory p 53.0 30 0.001 27.2 6.2 47 59-107 2-48 (81)
78 1v5n_A PDI-like hypothetical p 50.9 9.4 0.00032 31.7 2.9 32 195-227 47-78 (89)
79 3lay_A Zinc resistance-associa 49.4 1.2E+02 0.0041 28.2 10.5 34 523-556 114-147 (175)
80 1mzb_A Ferric uptake regulatio 48.9 19 0.00065 31.5 4.8 48 58-105 19-71 (136)
81 3ny3_A E3 ubiquitin-protein li 47.3 12 0.00042 30.2 2.9 31 209-243 17-50 (75)
82 2o03_A Probable zinc uptake re 45.6 27 0.00093 30.3 5.2 54 54-108 8-66 (131)
83 3nis_A E3 ubiquitin-protein li 43.7 15 0.00053 30.2 3.0 39 201-243 11-54 (82)
84 2xig_A Ferric uptake regulatio 41.3 30 0.001 30.9 5.0 51 55-106 25-80 (150)
85 2w57_A Ferric uptake regulatio 41.0 22 0.00075 31.8 3.9 48 58-105 18-70 (150)
86 4ham_A LMO2241 protein; struct 37.5 54 0.0018 28.4 5.9 54 53-107 18-72 (134)
87 3e7l_A Transcriptional regulat 36.9 26 0.00088 26.6 3.2 27 257-283 18-44 (63)
88 2e50_A Protein SET; histone ch 36.8 57 0.0019 31.5 6.4 35 517-556 42-80 (225)
89 2fe3_A Peroxide operon regulat 35.2 43 0.0015 29.6 4.9 48 58-106 23-75 (145)
90 3tqn_A Transcriptional regulat 33.1 53 0.0018 27.7 5.0 54 52-106 12-66 (113)
91 2xb0_X Chromo domain-containin 32.6 61 0.0021 32.3 5.9 42 252-293 3-49 (270)
92 3mwm_A ZUR, putative metal upt 32.5 68 0.0023 28.1 5.7 51 54-105 11-66 (139)
93 3r0a_A Putative transcriptiona 31.6 73 0.0025 27.2 5.7 51 59-109 28-78 (123)
94 3eyy_A Putative iron uptake re 30.6 43 0.0015 29.7 4.1 46 58-105 20-70 (145)
95 1weo_A Cellulose synthase, cat 30.4 28 0.00097 29.1 2.5 46 195-241 16-70 (93)
96 2crr_A Stromal membrane-associ 28.9 39 0.0013 30.4 3.5 84 195-295 29-119 (141)
97 1ovx_A ATP-dependent CLP prote 28.7 30 0.001 27.4 2.3 33 195-228 18-50 (67)
98 3by6_A Predicted transcription 28.4 85 0.0029 27.0 5.6 53 52-105 14-67 (126)
99 2ek5_A Predicted transcription 27.1 59 0.002 28.3 4.3 54 52-106 7-61 (129)
100 4ets_A Ferric uptake regulatio 26.0 66 0.0023 29.1 4.6 47 58-105 34-87 (162)
101 2d1h_A ST1889, 109AA long hypo 25.9 1E+02 0.0034 24.5 5.3 38 72-109 35-72 (109)
102 2ds5_A CLPX, ATP-dependent CLP 25.6 43 0.0015 25.0 2.6 31 196-227 12-42 (51)
103 1ign_A Protein (RAP1); RAP1,ye 25.4 1.5E+02 0.0051 29.1 7.1 23 273-295 173-195 (246)
104 3zyq_A Hepatocyte growth facto 25.3 56 0.0019 31.3 4.1 30 196-226 165-196 (226)
105 2owa_A Arfgap-like finger doma 25.1 52 0.0018 29.6 3.5 56 195-263 36-92 (138)
106 2oqg_A Possible transcriptiona 24.0 1.1E+02 0.0038 24.8 5.4 48 58-108 22-69 (114)
107 2k4b_A Transcriptional regulat 24.0 1E+02 0.0035 25.6 5.0 42 64-108 43-88 (99)
108 1cf7_A Protein (transcription 23.7 1.1E+02 0.0039 24.4 5.0 47 57-104 15-62 (76)
109 2x4h_A Hypothetical protein SS 23.4 1.2E+02 0.0041 25.6 5.6 54 51-107 12-65 (139)
110 2kj8_A Putative prophage CPS-5 23.3 75 0.0026 26.0 4.1 55 51-105 23-93 (118)
111 4efa_E V-type proton ATPase su 23.2 4.7E+02 0.016 24.6 14.1 82 467-551 15-101 (233)
112 2b0l_A GTP-sensing transcripti 22.8 60 0.0021 27.1 3.4 54 52-107 21-77 (102)
113 2p57_A GTPase-activating prote 22.8 44 0.0015 30.3 2.6 58 194-263 36-94 (144)
114 2olm_A Nucleoporin-like protei 22.4 1E+02 0.0035 27.6 4.9 56 195-264 25-81 (140)
115 3sub_A ADP-ribosylation factor 22.2 51 0.0018 30.5 2.9 56 195-263 22-78 (163)
116 3neu_A LIN1836 protein; struct 22.1 82 0.0028 27.0 4.2 54 52-106 16-70 (125)
117 1gmj_A ATPase inhibitor; coile 21.8 3.4E+02 0.011 22.3 8.9 53 480-536 27-79 (84)
118 1bja_A Transcription regulator 21.8 89 0.003 26.2 4.1 35 68-104 27-62 (95)
119 2kj5_A Phage integrase; GFT PS 21.8 56 0.0019 26.3 2.9 22 87-108 76-97 (116)
120 1rji_A BMKX, potassium channel 21.7 25 0.00086 23.1 0.5 17 212-228 13-29 (31)
121 3oja_B Anopheles plasmodium-re 21.7 4.3E+02 0.015 28.1 10.8 27 519-545 548-574 (597)
122 3htu_B Vacuolar protein-sortin 21.5 74 0.0025 22.5 3.0 25 505-529 12-37 (39)
123 2vn2_A DNAD, chromosome replic 21.4 93 0.0032 26.8 4.4 41 69-109 47-87 (128)
124 1qgp_A Protein (double strande 21.3 1.3E+02 0.0046 23.6 5.0 52 55-106 12-64 (77)
125 2xus_A Breast cancer metastasi 21.0 2.6E+02 0.0088 20.7 6.0 27 524-551 16-42 (49)
126 3cuo_A Uncharacterized HTH-typ 20.9 1.5E+02 0.005 23.3 5.3 49 58-108 25-73 (99)
No 1
>2fq3_A Transcription regulatory protein SWI3; four-helix bundle; 1.40A {Saccharomyces cerevisiae} SCOP: a.4.1.18
Probab=100.00 E-value=7.3e-42 Score=297.77 Aligned_cols=93 Identities=38% Similarity=0.746 Sum_probs=84.7
Q ss_pred eecCCCCCCCCCCCCCHHHHhhcccccCCCCCCCChhhHHHHHHHHHHHHHhCCCceeeHHHHhhhccchHHHHHHHHHh
Q 008612 17 YTIPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRL 96 (559)
Q Consensus 17 iiIPs~~~wF~~~~i~~iE~~~~peff~~~~~~ktp~~Y~~~RN~ii~~yr~np~~~lt~t~~r~~l~gD~~~i~rvh~F 96 (559)
=.-|+|++||+|++||+||+++|||||+|++++|||++|++|||+||++||.||.+|||+|+||++|+|||++|+|||+|
T Consensus 11 ~~~p~~s~wF~~~~Ih~iEk~~lPEfF~g~~~~ktpe~Yl~iRN~iI~~yr~nP~~yLT~t~~r~~l~gDv~~i~RVh~F 90 (104)
T 2fq3_A 11 GMASSYSKWFNLEKIHSIEVQSLPEFFTNRIPSKTPEVYMRYRNFMVNSYRLNPNEYFSVTTARRNVSGDAAALFRLHKF 90 (104)
T ss_dssp ------CTTCCTTCCCHHHHHHCGGGCCSSCTTSCHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHSCSCHHHHHHHHHH
T ss_pred CCCCCcccccCcccCCHHHHHHChHHhcCCCCCCCHHHHHHHHHHHHHHHHhCCceeeeHHHHHHHccccHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccccccCC
Q 008612 97 LDEWGLINFGAVS 109 (559)
Q Consensus 97 Le~wGlIN~~~~~ 109 (559)
||+|||||||++|
T Consensus 91 Le~wGLIN~~v~~ 103 (104)
T 2fq3_A 91 LTKWGLINYQVDS 103 (104)
T ss_dssp HHHTTSSSSCC--
T ss_pred HHHcCeeccCCCC
Confidence 9999999999997
No 2
>2dce_A KIAA1915 protein; swirm domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=5.7e-41 Score=296.28 Aligned_cols=95 Identities=29% Similarity=0.515 Sum_probs=92.5
Q ss_pred ceeecCCCCCCCCCCCCCHHHHhhcccccCCCCCCCChhhHHHHHHHHHHHHHhCCCceeeHHHHhhhc--cchHHHHHH
Q 008612 15 ELYTIPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSL--VGDVSLLHK 92 (559)
Q Consensus 15 ~~iiIPs~~~wF~~~~i~~iE~~~~peff~~~~~~ktp~~Y~~~RN~ii~~yr~np~~~lt~t~~r~~l--~gD~~~i~r 92 (559)
++++||+|++||++++||+||+++|||||+|+ ++|||++||+|||+||++||.||.+|||+|+||++| +|||++|+|
T Consensus 11 ~~~~iP~~~~wf~~~~ih~iEk~~lPefF~g~-~~ktpe~Yl~iRN~iI~~yr~np~~yLT~t~~rr~L~~~gDv~~i~R 89 (111)
T 2dce_A 11 EELKPPEQEIEIDRNIIQEEEKQAIPEFFEGR-QAKTPERYLKIRNYILDQWEICKPKYLNKTSVRPGLKNCGDVNCIGR 89 (111)
T ss_dssp CSCCCCSSCCCCCSSCCCHHHHTTSGGGGSCC-SSCCHHHHHHHHHHHHHHHHHHTTSCCCGGGTTTTTSSSSCHHHHHH
T ss_pred cCCcCCCcccccCcccCCHHHHHhChHHhcCC-cccCHHHHHHHHHHHHHHHHhCCcceeeHHHHHHhcccccCHHHHHH
Confidence 67999999999999999999999999999998 799999999999999999999999999999999999 699999999
Q ss_pred HHHhhhhhcccccccCCC
Q 008612 93 VFRLLDEWGLINFGAVSR 110 (559)
Q Consensus 93 vh~FLe~wGlIN~~~~~~ 110 (559)
||+|||+|||||||+++.
T Consensus 90 Vh~FLe~wGLIN~~~~~~ 107 (111)
T 2dce_A 90 IHTYLELIGAINFGCEQA 107 (111)
T ss_dssp HHHHHHHHSSSSCSCTTS
T ss_pred HHHHHHHcCeeecCCChh
Confidence 999999999999999984
No 3
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.63 E-value=6e-16 Score=128.96 Aligned_cols=59 Identities=32% Similarity=0.637 Sum_probs=55.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHHcCCcCCCCCCCcccc
Q 008612 251 HGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIELPFGEFMMGSAHEM 309 (559)
Q Consensus 251 ~~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~vg~kT~~eC~~~flqLPIeD~~l~~~~~~ 309 (559)
....||.+|+.+||++|++||++|.+||++||+||+.||+.||+++||+|+|+...++.
T Consensus 17 ~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~~i~d~~~~~~~~~ 75 (79)
T 2yus_A 17 AGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLENSDSG 75 (79)
T ss_dssp CSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTSCCCCSSCCCCCCC
T ss_pred cCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcccccccccCCCC
Confidence 46789999999999999999999999999999999999999999999999999887643
No 4
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.33 E-value=1.3e-12 Score=102.39 Aligned_cols=48 Identities=25% Similarity=0.534 Sum_probs=45.3
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcC-CCCHHHHHHHHHcCCcC
Q 008612 252 GATWTEAETLLLLESVMRHG-DNWELVAQNVP-TKSKLDCISKLIELPFG 299 (559)
Q Consensus 252 ~~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~vg-~kT~~eC~~~flqLPIe 299 (559)
...||.+|+.+||++|++|| +||..||++|+ +||+.||+.||.+++|.
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~~~ 58 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTYIE 58 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHccC
Confidence 56899999999999999999 99999999999 99999999999998763
No 5
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.22 E-value=1.1e-11 Score=97.66 Aligned_cols=49 Identities=37% Similarity=0.630 Sum_probs=45.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCCCCHHHHHHHHHcCCcC
Q 008612 251 HGATWTEAETLLLLESVMRHG-DNWELVAQNVPTKSKLDCISKLIELPFG 299 (559)
Q Consensus 251 ~~~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~vg~kT~~eC~~~flqLPIe 299 (559)
....||.+|+.+||++|++|| ++|..||++|++||+.||+.||.++.+.
T Consensus 7 ~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 7 GDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 467899999999999999999 8999999999999999999999986654
No 6
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.10 E-value=7.4e-11 Score=96.73 Aligned_cols=62 Identities=26% Similarity=0.391 Sum_probs=51.0
Q ss_pred CCCceeccCCCCCCCCCCCCCHHHHHHHHHHHHHcC----CCHHHHHHHcCCCCHHHHHHHHHcCCcCCC
Q 008612 236 KDDFRFSDLGGNSLTHGATWTEAETLLLLESVMRHG----DNWELVAQNVPTKSKLDCISKLIELPFGEF 301 (559)
Q Consensus 236 s~df~~~~~~~~~~~~~~~WT~~E~~~LLe~Ie~~g----~nW~~Ia~~vg~kT~~eC~~~flqLPIeD~ 301 (559)
..++.+.+... .....||.+|+.+|+++|.+|| ++|.+||++|++||..||+.||..| ++|+
T Consensus 5 ~~~~~~~~~~~---~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L-~~d~ 70 (73)
T 2cqr_A 5 SSGSLRKERAR---SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL-VSGP 70 (73)
T ss_dssp SSSCCCCCTTT---CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH-HSSC
T ss_pred ccccccccccc---cCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHH-HHcc
Confidence 34555555443 3467899999999999999999 6899999999999999999999875 5554
No 7
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=98.98 E-value=6e-10 Score=85.02 Aligned_cols=44 Identities=20% Similarity=0.505 Sum_probs=41.5
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCCCCHHHHHHHHHc
Q 008612 252 GATWTEAETLLLLESVMRHG-DNWELVAQNVPTKSKLDCISKLIE 295 (559)
Q Consensus 252 ~~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~vg~kT~~eC~~~flq 295 (559)
...||.+|+.+|+++|++|| .+|..||++|++||..||..||.+
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~ 47 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHN 47 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHH
Confidence 46899999999999999999 589999999999999999999975
No 8
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=98.98 E-value=5.2e-10 Score=85.35 Aligned_cols=44 Identities=23% Similarity=0.599 Sum_probs=41.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCC-CHHHHHHHcCCCCHHHHHHHHHc
Q 008612 252 GATWTEAETLLLLESVMRHGD-NWELVAQNVPTKSKLDCISKLIE 295 (559)
Q Consensus 252 ~~~WT~~E~~~LLe~Ie~~g~-nW~~Ia~~vg~kT~~eC~~~flq 295 (559)
...||.+|+.+|+++|++||. +|..||++|++||+.||..||..
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~ 47 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQK 47 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHH
Confidence 468999999999999999995 99999999999999999999975
No 9
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.94 E-value=9.5e-10 Score=89.88 Aligned_cols=46 Identities=26% Similarity=0.347 Sum_probs=42.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcC----CCHHHHHHHcCCCCHHHHHHHHHcC
Q 008612 251 HGATWTEAETLLLLESVMRHG----DNWELVAQNVPTKSKLDCISKLIEL 296 (559)
Q Consensus 251 ~~~~WT~~E~~~LLe~Ie~~g----~nW~~Ia~~vg~kT~~eC~~~flqL 296 (559)
....||.+|+.+|.+||..|+ ++|++||.+||+||.+||+.||..|
T Consensus 7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMEN 56 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 356899999999999999998 5799999999999999999999876
No 10
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=98.94 E-value=1.4e-09 Score=85.47 Aligned_cols=45 Identities=22% Similarity=0.553 Sum_probs=42.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCCCCHHHHHHHHHc
Q 008612 251 HGATWTEAETLLLLESVMRHG-DNWELVAQNVPTKSKLDCISKLIE 295 (559)
Q Consensus 251 ~~~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~vg~kT~~eC~~~flq 295 (559)
....||.+|+.+|+++|++|| .+|..||++|++||..||..||..
T Consensus 7 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~ 52 (60)
T 2d9a_A 7 GKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLR 52 (60)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHH
Confidence 467899999999999999999 799999999999999999999975
No 11
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=98.93 E-value=1e-09 Score=84.16 Aligned_cols=44 Identities=16% Similarity=0.257 Sum_probs=41.6
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcC--CCCHHHHHHHHHc
Q 008612 252 GATWTEAETLLLLESVMRHG-DNWELVAQNVP--TKSKLDCISKLIE 295 (559)
Q Consensus 252 ~~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~vg--~kT~~eC~~~flq 295 (559)
...||.+|+.+|+++|++|| ++|..||++++ +||..||..+|..
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~ 48 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRT 48 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 35799999999999999999 89999999999 9999999999976
No 12
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=1.1e-09 Score=89.87 Aligned_cols=45 Identities=16% Similarity=0.328 Sum_probs=42.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcC------CCHHHHHHHcCCCCHHHHHHHHHc
Q 008612 251 HGATWTEAETLLLLESVMRHG------DNWELVAQNVPTKSKLDCISKLIE 295 (559)
Q Consensus 251 ~~~~WT~~E~~~LLe~Ie~~g------~nW~~Ia~~vg~kT~~eC~~~flq 295 (559)
....||.+|+.+|+++|++|| .+|..||++|++||..||+.||..
T Consensus 7 ~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~ 57 (75)
T 2yum_A 7 GNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQK 57 (75)
T ss_dssp CSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHH
Confidence 357899999999999999999 799999999999999999999963
No 13
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=2.6e-09 Score=86.55 Aligned_cols=45 Identities=29% Similarity=0.609 Sum_probs=42.7
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCCCCHHHHHHHHHc
Q 008612 251 HGATWTEAETLLLLESVMRHG-DNWELVAQNVPTKSKLDCISKLIE 295 (559)
Q Consensus 251 ~~~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~vg~kT~~eC~~~flq 295 (559)
....||.+|+.+|+++|++|| ++|..||.+|++||..||..||.+
T Consensus 8 k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~ 53 (70)
T 2dim_A 8 KGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYE 53 (70)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHH
Confidence 457899999999999999999 899999999999999999999986
No 14
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.89 E-value=1.9e-09 Score=87.82 Aligned_cols=45 Identities=18% Similarity=0.372 Sum_probs=42.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHHc
Q 008612 251 HGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIE 295 (559)
Q Consensus 251 ~~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~vg~kT~~eC~~~flq 295 (559)
....||.+|+.+|++++++||.+|..||++|++||..||..||..
T Consensus 8 ~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~ 52 (72)
T 2cu7_A 8 YSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQ 52 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999864
No 15
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=98.85 E-value=2.9e-09 Score=85.09 Aligned_cols=44 Identities=20% Similarity=0.437 Sum_probs=41.2
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcC--CCCHHHHHHHHHc
Q 008612 252 GATWTEAETLLLLESVMRHG-DNWELVAQNVP--TKSKLDCISKLIE 295 (559)
Q Consensus 252 ~~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~vg--~kT~~eC~~~flq 295 (559)
...||.+|+.+|+++|++|| ++|..||++++ +||+.||..+|.+
T Consensus 11 k~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~n 57 (64)
T 3sjm_A 11 KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRT 57 (64)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHH
Confidence 56899999999999999999 79999999987 8999999999975
No 16
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=98.81 E-value=6.5e-09 Score=83.95 Aligned_cols=45 Identities=16% Similarity=0.256 Sum_probs=42.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcC--CCCHHHHHHHHHc
Q 008612 251 HGATWTEAETLLLLESVMRHG-DNWELVAQNVP--TKSKLDCISKLIE 295 (559)
Q Consensus 251 ~~~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~vg--~kT~~eC~~~flq 295 (559)
....||.+|+.+|+++|++|| ++|..||++++ +||..||..||..
T Consensus 9 ~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~ 56 (69)
T 1ity_A 9 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRT 56 (69)
T ss_dssp SCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHH
Confidence 367899999999999999999 89999999999 9999999999975
No 17
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=1.3e-08 Score=80.39 Aligned_cols=44 Identities=25% Similarity=0.449 Sum_probs=41.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHHc
Q 008612 252 GATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIE 295 (559)
Q Consensus 252 ~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~vg~kT~~eC~~~flq 295 (559)
...||++|..++++++.+||.+|..||.+|++||..||+.+|..
T Consensus 12 ~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~ 55 (61)
T 2eqr_A 12 MNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYL 55 (61)
T ss_dssp CCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999953
No 18
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.73 E-value=1.2e-08 Score=81.53 Aligned_cols=44 Identities=16% Similarity=0.339 Sum_probs=40.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHHc
Q 008612 251 HGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIE 295 (559)
Q Consensus 251 ~~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~vg~kT~~eC~~~flq 295 (559)
....||.+|+.+|+++++.||.+|..||+.+| ||..||..||..
T Consensus 8 ~k~~WT~eED~~L~~~~~~~g~~W~~Ia~~~g-Rt~~qcr~Rw~~ 51 (66)
T 2din_A 8 KKTEWSREEEEKLLHLAKLMPTQWRTIAPIIG-RTAAQCLEHYEF 51 (66)
T ss_dssp SCCCCCHHHHHHHHHHHHHCTTCHHHHHHHHS-SCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHhcccC-cCHHHHHHHHHH
Confidence 35789999999999999999999999999665 999999999975
No 19
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.67 E-value=1.6e-08 Score=86.64 Aligned_cols=46 Identities=20% Similarity=0.330 Sum_probs=41.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcC----CCHHHHHHHcCCCCHHHHHHHHHcC
Q 008612 251 HGATWTEAETLLLLESVMRHG----DNWELVAQNVPTKSKLDCISKLIEL 296 (559)
Q Consensus 251 ~~~~WT~~E~~~LLe~Ie~~g----~nW~~Ia~~vg~kT~~eC~~~flqL 296 (559)
....||.+|+.+|+++|.+|| +.|.+||.+|++||.+||+.||..|
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l 56 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEIL 56 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHH
Confidence 356899999999999999997 5799999999999999999999874
No 20
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.07 E-value=3.6e-09 Score=89.87 Aligned_cols=45 Identities=27% Similarity=0.448 Sum_probs=42.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHHc
Q 008612 251 HGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIE 295 (559)
Q Consensus 251 ~~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~vg~kT~~eC~~~flq 295 (559)
..+.||.+|+.+|++++++||.+|..||++|++||..||..||..
T Consensus 15 ~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~ 59 (89)
T 2ltp_A 15 YFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFN 59 (89)
Confidence 467899999999999999999999999999999999999999964
No 21
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.61 E-value=5e-08 Score=79.89 Aligned_cols=45 Identities=20% Similarity=0.356 Sum_probs=42.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHHcC
Q 008612 251 HGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIEL 296 (559)
Q Consensus 251 ~~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~vg~kT~~eC~~~flqL 296 (559)
..+.||.+|+.+|++++.+||..|..||+++ +||..+|..+|..|
T Consensus 22 ~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L 66 (73)
T 2llk_A 22 HVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLM 66 (73)
T ss_dssp CCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHH
Confidence 4678999999999999999999999999999 99999999999764
No 22
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.60 E-value=4.4e-08 Score=85.60 Aligned_cols=43 Identities=30% Similarity=0.487 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCCCCHHHHHHHHHc
Q 008612 253 ATWTEAETLLLLESVMRHG-DNWELVAQNVPTKSKLDCISKLIE 295 (559)
Q Consensus 253 ~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~vg~kT~~eC~~~flq 295 (559)
+.||.+|+.+|+++|++|| ++|..||++|++||+.||..||.+
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~ 45 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNN 45 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHH
Confidence 4799999999999999999 699999999999999999999985
No 23
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.57 E-value=6.4e-08 Score=84.02 Aligned_cols=44 Identities=18% Similarity=0.488 Sum_probs=41.9
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCCCCHHHHHHHHHc
Q 008612 252 GATWTEAETLLLLESVMRHG-DNWELVAQNVPTKSKLDCISKLIE 295 (559)
Q Consensus 252 ~~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~vg~kT~~eC~~~flq 295 (559)
.+.||.+|+.+|+++|++|| ++|..||++|++||+.||..||.+
T Consensus 4 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~ 48 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHN 48 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHh
Confidence 56899999999999999999 589999999999999999999986
No 24
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.55 E-value=6.7e-08 Score=86.88 Aligned_cols=45 Identities=22% Similarity=0.564 Sum_probs=42.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHHc
Q 008612 251 HGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIE 295 (559)
Q Consensus 251 ~~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~vg~kT~~eC~~~flq 295 (559)
..+.||.+|+.+|+++|++||.+|..||+++++||+.||..||.+
T Consensus 10 kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~ 54 (126)
T 3osg_A 10 KKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKN 54 (126)
T ss_dssp SSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhh
Confidence 467899999999999999999999999999999999999999985
No 25
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.49 E-value=1.1e-07 Score=92.68 Aligned_cols=45 Identities=20% Similarity=0.447 Sum_probs=42.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHHc
Q 008612 251 HGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIE 295 (559)
Q Consensus 251 ~~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~vg~kT~~eC~~~flq 295 (559)
....||++|..++++|+.+||.||..||++||+||..||+.||..
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~ 176 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVN 176 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHH
Confidence 367899999999999999999999999999999999999999973
No 26
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.48 E-value=2e-07 Score=83.86 Aligned_cols=45 Identities=20% Similarity=0.475 Sum_probs=42.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCCCCHHHHHHHHHc
Q 008612 251 HGATWTEAETLLLLESVMRHG-DNWELVAQNVPTKSKLDCISKLIE 295 (559)
Q Consensus 251 ~~~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~vg~kT~~eC~~~flq 295 (559)
..+.||.+|+.+|+++|++|| ++|..||++|++||..||..||.+
T Consensus 26 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~ 71 (128)
T 1h8a_C 26 NKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHN 71 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHH
Confidence 357899999999999999999 689999999999999999999986
No 27
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.47 E-value=1.5e-07 Score=82.19 Aligned_cols=44 Identities=16% Similarity=0.388 Sum_probs=42.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHHc
Q 008612 252 GATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIE 295 (559)
Q Consensus 252 ~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~vg~kT~~eC~~~flq 295 (559)
.+.||.+|+.+|++++..||.+|..||++|++||..+|..||..
T Consensus 53 ~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~ 96 (107)
T 2k9n_A 53 TDPWSPEEDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMM 96 (107)
T ss_dssp TCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHhCcCHHHHHHHCCCCCHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999975
No 28
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.47 E-value=1.5e-07 Score=81.68 Aligned_cols=44 Identities=20% Similarity=0.453 Sum_probs=42.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHHc
Q 008612 252 GATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIE 295 (559)
Q Consensus 252 ~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~vg~kT~~eC~~~flq 295 (559)
.+.||.+|+.+|++++.+||.+|..||++|++||+.+|..||..
T Consensus 56 ~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~ 99 (105)
T 1gv2_A 56 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 99 (105)
T ss_dssp CCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999965
No 29
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.46 E-value=8.7e-08 Score=86.63 Aligned_cols=44 Identities=30% Similarity=0.538 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCCCCHHHHHHHHHc
Q 008612 252 GATWTEAETLLLLESVMRHG-DNWELVAQNVPTKSKLDCISKLIE 295 (559)
Q Consensus 252 ~~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~vg~kT~~eC~~~flq 295 (559)
.+.||.+|+.+|+++|++|| ++|..||.+|++||+.||..||.+
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~ 46 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFN 46 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhh
Confidence 35799999999999999999 899999999999999999999975
No 30
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.46 E-value=1.5e-07 Score=84.58 Aligned_cols=44 Identities=20% Similarity=0.572 Sum_probs=42.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHHc
Q 008612 252 GATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIE 295 (559)
Q Consensus 252 ~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~vg~kT~~eC~~~flq 295 (559)
.+.||.+|+.+|++++.+||.+|..||++|++||..+|..||..
T Consensus 62 ~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~ 105 (126)
T 3osg_A 62 HTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVT 105 (126)
T ss_dssp CSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999965
No 31
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.46 E-value=1.6e-07 Score=78.67 Aligned_cols=43 Identities=23% Similarity=0.312 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHHHHHHHcC-CCHHHHHHH----cCCCCHHHHHHHHHc
Q 008612 253 ATWTEAETLLLLESVMRHG-DNWELVAQN----VPTKSKLDCISKLIE 295 (559)
Q Consensus 253 ~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~----vg~kT~~eC~~~flq 295 (559)
..||.+|+..|+++|++|| |+|.+|+++ +.+||..+|..||..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrn 48 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKT 48 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHH
Confidence 3699999999999999999 799999996 789999999999975
No 32
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Probab=98.45 E-value=9.5e-08 Score=107.48 Aligned_cols=87 Identities=26% Similarity=0.471 Sum_probs=75.6
Q ss_pred CCCCCCCCCCCHHHHhhcccccCCCCCCCChhhHHHHHHHHHHHHHhCCCceeeHHHHh----hhccchHHHHHHHHHhh
Q 008612 22 HSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVR----KSLVGDVSLLHKVFRLL 97 (559)
Q Consensus 22 ~~~wF~~~~i~~iE~~~~peff~~~~~~ktp~~Y~~~RN~ii~~yr~np~~~lt~t~~r----~~l~gD~~~i~rvh~FL 97 (559)
+++.|+.+.+|+.|+.+|||+..+. ..+...|+.|||.|+..|+.||..+||..+|. |.+..|...|.+|++|+
T Consensus 8 ~~~~l~~~~l~~~E~~~~~~~~~~~--~~~~~~yl~irn~~~~~w~~~~~~~~~~~~~~~~~~r~~~~~~~~i~~~~~~~ 85 (662)
T 2z3y_A 8 FQSRLPHDRMTSQEAACFPDIISGP--QQTQKVFLFIRNRTLQLWLDNPKIQLTFEATLQQLEAPYNSDTVLVHRVHSYL 85 (662)
T ss_dssp HHTTCCTTSCCHHHHHHCHHHHTSC--HHHHHHHHHHHHHHHHHHHTCTTBCCCHHHHHHHSCTTGGGCHHHHHHHHHHH
T ss_pred HHcCCCCCCCCHHHHHHhHHHHcCc--hHHHHHHHHHHHHHHHHHHHCCCcccCHHHHHHhcCCCccCChHHHHHHHHHH
Confidence 4578999999999999999998652 12446899999999999999999999999984 44557899999999999
Q ss_pred hhhcccccccCCC
Q 008612 98 DEWGLINFGAVSR 110 (559)
Q Consensus 98 e~wGlIN~~~~~~ 110 (559)
.+||+||+++...
T Consensus 86 ~~~~~~~~~~~~~ 98 (662)
T 2z3y_A 86 ERHGLINFGIYKR 98 (662)
T ss_dssp HHTTSSSCSSCBC
T ss_pred HHHHHHhcCCccc
Confidence 9999999888763
No 33
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=98.44 E-value=3.3e-07 Score=105.15 Aligned_cols=88 Identities=18% Similarity=0.259 Sum_probs=75.3
Q ss_pred eeecCCCCCCCCC------------CCCCHHHHhhcccccCCCCCCCChhhHHHHHHHHHHHHHhCCCceeeHHHHhhhc
Q 008612 16 LYTIPSHSSWFRW------------DDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSL 83 (559)
Q Consensus 16 ~iiIPs~~~wF~~------------~~i~~iE~~~~peff~~~~~~ktp~~Y~~~RN~ii~~yr~np~~~lt~t~~r~~l 83 (559)
...+..|-.+|-. |.|+..|+.+||||..+ +.+|+.|||.|+.+|+.||...||...|++.+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~a~~~~p~~~~~~e~~~fp~~~~~------~~~yl~irn~il~~w~~np~~~l~~~~~~~~~ 289 (776)
T 4gut_A 216 VPGMNRYFQPFYQPNECGKALCVRPDVMELDELYEFPEYSRD------PTMYLALRNLILALWYTNCKEALTPQKCIPHI 289 (776)
T ss_dssp --CCCTTCCCBCCTTCCCCSSCBCTTSCCHHHHHHCGGGSSC------CHHHHHHHHHHHHHHHHCTTSCCCHHHHGGGC
T ss_pred ccccccccccccCCCccccchhcCCCcCChHHHHhChHHHhc------CceeeeehHHHHHHHHHCCceeeeHHHhhhhc
Confidence 4456677888865 99999999999999753 57999999999999999999999999998876
Q ss_pred c-------chHHHHHHHHHhhhhhcccccccCC
Q 008612 84 V-------GDVSLLHKVFRLLDEWGLINFGAVS 109 (559)
Q Consensus 84 ~-------gD~~~i~rvh~FLe~wGlIN~~~~~ 109 (559)
. ..+..+.+|+.||.++|+||+++..
T Consensus 290 ~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (776)
T 4gut_A 290 IVRGLVRIRCVQEVERILYFMTRKGLINTGVLS 322 (776)
T ss_dssp CCSSTHHHHHHHHHHHHHHHHHHHTSSSCTTCC
T ss_pred ccccccccccHHHHHHHHHHHHHhhhhhccccc
Confidence 3 3467789999999999999998864
No 34
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.42 E-value=4.4e-07 Score=72.14 Aligned_cols=44 Identities=20% Similarity=0.344 Sum_probs=41.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHH-cCCCCHHHHHHHHH
Q 008612 251 HGATWTEAETLLLLESVMRHGDNWELVAQN-VPTKSKLDCISKLI 294 (559)
Q Consensus 251 ~~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~-vg~kT~~eC~~~fl 294 (559)
....||++|..+++++|.+||.||..|+++ |++||..||+.+|.
T Consensus 8 ~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY 52 (63)
T 2yqk_A 8 IEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYY 52 (63)
T ss_dssp CCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHh
Confidence 457899999999999999999999999996 99999999999995
No 35
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.39 E-value=4.3e-07 Score=81.66 Aligned_cols=45 Identities=20% Similarity=0.442 Sum_probs=42.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHHcC
Q 008612 252 GATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIEL 296 (559)
Q Consensus 252 ~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~vg~kT~~eC~~~flqL 296 (559)
.+.||.+|+.+|++++.+||.+|..||++|++||..+|..||..+
T Consensus 79 ~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~ 123 (128)
T 1h8a_C 79 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNST 123 (128)
T ss_dssp CSCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999754
No 36
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.36 E-value=4.4e-07 Score=82.03 Aligned_cols=44 Identities=16% Similarity=0.450 Sum_probs=42.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHHc
Q 008612 252 GATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIE 295 (559)
Q Consensus 252 ~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~vg~kT~~eC~~~flq 295 (559)
.+.||.+|+.+|++++..||.+|..||++|++||..+|..||..
T Consensus 54 ~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~ 97 (131)
T 3zqc_A 54 KHAWTPEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNS 97 (131)
T ss_dssp CSCCCHHHHHHHHHHHHHSCSCHHHHTTTSTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999975
No 37
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.24 E-value=7.8e-07 Score=95.91 Aligned_cols=45 Identities=20% Similarity=0.447 Sum_probs=42.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHHc
Q 008612 251 HGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIE 295 (559)
Q Consensus 251 ~~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~vg~kT~~eC~~~flq 295 (559)
....||.+|.+++++||.+||.||..||++|||||..||+.||..
T Consensus 379 ~~~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~ 423 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVN 423 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHH
Confidence 367899999999999999999999999999999999999999964
No 38
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.21 E-value=1.2e-06 Score=71.43 Aligned_cols=49 Identities=24% Similarity=0.415 Sum_probs=43.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcC----CCHHHHHHHcCCCCHHHHHHHHHcCCcCCC
Q 008612 251 HGATWTEAETLLLLESVMRHG----DNWELVAQNVPTKSKLDCISKLIELPFGEF 301 (559)
Q Consensus 251 ~~~~WT~~E~~~LLe~Ie~~g----~nW~~Ia~~vg~kT~~eC~~~flqLPIeD~ 301 (559)
....||.+|+.+|..++.+|+ +.|+.||+++| ||.+||+.||-.| .+|.
T Consensus 7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lg-Rt~~eV~~~y~~L-~~d~ 59 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG-RSVTDVTTKAKQL-KDSV 59 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT-SCHHHHHHHHHHH-HHSC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhC-CCHHHHHHHHHHH-HHhc
Confidence 356899999999999999997 56999999995 9999999999887 5664
No 39
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.20 E-value=1.9e-06 Score=69.91 Aligned_cols=44 Identities=23% Similarity=0.365 Sum_probs=41.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHH-cCCCCHHHHHHHHHc
Q 008612 252 GATWTEAETLLLLESVMRHGDNWELVAQN-VPTKSKLDCISKLIE 295 (559)
Q Consensus 252 ~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~-vg~kT~~eC~~~flq 295 (559)
...||++|..++.+||.+||.||..|+++ |++||..||+.+|..
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 46799999999999999999999999995 999999999999963
No 40
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.15 E-value=2.6e-06 Score=79.25 Aligned_cols=44 Identities=18% Similarity=0.488 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCCCCHHHHHHHHHc
Q 008612 252 GATWTEAETLLLLESVMRHG-DNWELVAQNVPTKSKLDCISKLIE 295 (559)
Q Consensus 252 ~~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~vg~kT~~eC~~~flq 295 (559)
...||.+|+.+|+++++.|| .+|..||+++++||..||..||..
T Consensus 58 ~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~ 102 (159)
T 1h89_C 58 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHN 102 (159)
T ss_dssp CSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHH
Confidence 57899999999999999999 589999999999999999999976
No 41
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=98.15 E-value=1.8e-06 Score=77.17 Aligned_cols=44 Identities=27% Similarity=0.330 Sum_probs=40.9
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHc----CCCCHHHHHHHHHc
Q 008612 252 GATWTEAETLLLLESVMRHG-DNWELVAQNV----PTKSKLDCISKLIE 295 (559)
Q Consensus 252 ~~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~v----g~kT~~eC~~~flq 295 (559)
...||.+|+..|+++|++|| |+|.+|+++. ..||..+|..+|..
T Consensus 31 r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrn 79 (122)
T 2roh_A 31 RRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKT 79 (122)
T ss_dssp CCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHH
Confidence 57899999999999999999 7999999985 68999999999976
No 42
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.14 E-value=2.8e-06 Score=79.02 Aligned_cols=46 Identities=20% Similarity=0.429 Sum_probs=43.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHHcC
Q 008612 251 HGATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIEL 296 (559)
Q Consensus 251 ~~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~vg~kT~~eC~~~flqL 296 (559)
....||.+|+.+|++++.+||..|..||++|++||..+|..||..+
T Consensus 109 ~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~ 154 (159)
T 1h89_C 109 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNST 154 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTT
T ss_pred cccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999999999764
No 43
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.13 E-value=1.9e-06 Score=75.20 Aligned_cols=45 Identities=20% Similarity=0.257 Sum_probs=41.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHc----CCCCHHHHHHHHHc
Q 008612 251 HGATWTEAETLLLLESVMRHG-DNWELVAQNV----PTKSKLDCISKLIE 295 (559)
Q Consensus 251 ~~~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~v----g~kT~~eC~~~flq 295 (559)
....||.+|+..|+++|++|| |+|.+|++.. .+||..+|..+|..
T Consensus 12 ~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrn 61 (105)
T 2aje_A 12 IRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKT 61 (105)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHH
Confidence 367899999999999999999 7999999976 68999999999975
No 44
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.09 E-value=4.7e-07 Score=73.57 Aligned_cols=42 Identities=21% Similarity=0.377 Sum_probs=38.5
Q ss_pred CCCCCHHHHHHHHHHHHHcC----CCHHHHHHHcCCCCHHHHHHHH
Q 008612 252 GATWTEAETLLLLESVMRHG----DNWELVAQNVPTKSKLDCISKL 293 (559)
Q Consensus 252 ~~~WT~~E~~~LLe~Ie~~g----~nW~~Ia~~vg~kT~~eC~~~f 293 (559)
+..||.+|..+|-.||.+|+ +.|++||..||+||++||+.||
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY 65 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHY 65 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGG
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHH
Confidence 56899999999999999998 4799999999999999999998
No 45
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.09 E-value=4e-06 Score=71.81 Aligned_cols=43 Identities=26% Similarity=0.444 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHH
Q 008612 252 GATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLI 294 (559)
Q Consensus 252 ~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~vg~kT~~eC~~~fl 294 (559)
...||++|..++.+++..||.+|..|+++|++||..||+.+|.
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY 85 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYY 85 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHh
Confidence 3579999999999999999999999999999999999999995
No 46
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=98.03 E-value=2.8e-06 Score=75.91 Aligned_cols=45 Identities=22% Similarity=0.275 Sum_probs=41.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHHHc----CCCCHHHHHHHHHc
Q 008612 251 HGATWTEAETLLLLESVMRHG-DNWELVAQNV----PTKSKLDCISKLIE 295 (559)
Q Consensus 251 ~~~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~v----g~kT~~eC~~~flq 295 (559)
....||.+|+..|+++|++|| |+|.+|+.+. ..||..+|..+|..
T Consensus 16 ~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrn 65 (121)
T 2juh_A 16 IRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKT 65 (121)
T ss_dssp SSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHH
Confidence 367899999999999999999 7999999995 68999999999975
No 47
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.90 E-value=1.1e-05 Score=64.19 Aligned_cols=48 Identities=17% Similarity=0.476 Sum_probs=42.0
Q ss_pred ccCCCCCCC-CCCceeEeccCCCcccchhhhhcCC-CCCCCCCCCceecc
Q 008612 196 FKCGSCGEQ-CNSGCYEYSKQGSFVICEKCFKNGN-YGEDKSKDDFRFSD 243 (559)
Q Consensus 196 ~~C~~Cg~~-~~~~~y~~~k~~~~~lC~~Cf~~G~-~~~~~ss~df~~~~ 243 (559)
..|+.|+.. +...||+|..|.+|+||..||..|. ...|...|.|+.+.
T Consensus 12 ~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g~~~~~H~~~H~~~~~~ 61 (63)
T 2e5r_A 12 VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHAGGSHSNQHQMKEYT 61 (63)
T ss_dssp SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHCCCCSSSCTTCCEEEEC
T ss_pred CCCcCCCCcceecceEEecCCCCchhHHHHHhCCCcCCCCCCCCCEEEEe
Confidence 789999976 8889999999999999999999997 45667788888764
No 48
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=97.80 E-value=2.1e-05 Score=62.05 Aligned_cols=46 Identities=20% Similarity=0.290 Sum_probs=40.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHH---HcCCCCHHHHHHHHHcC
Q 008612 251 HGATWTEAETLLLLESVMRHGDNWELVAQ---NVPTKSKLDCISKLIEL 296 (559)
Q Consensus 251 ~~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~---~vg~kT~~eC~~~flqL 296 (559)
....||.+|+..|+++|++||.+|.+|+. ++..||.-.--.+|-.|
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L 55 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRL 55 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHH
Confidence 46789999999999999999999999994 66689999888888653
No 49
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=97.74 E-value=8.3e-06 Score=70.35 Aligned_cols=57 Identities=21% Similarity=0.621 Sum_probs=45.6
Q ss_pred cCCccCCCCCC-CCCCceeEeccCCCcccchhhhhcCCCCCCCCCCCceeccCCCCCCCCCCCCCHHH
Q 008612 193 LKGFKCGSCGE-QCNSGCYEYSKQGSFVICEKCFKNGNYGEDKSKDDFRFSDLGGNSLTHGATWTEAE 259 (559)
Q Consensus 193 ~~~~~C~~Cg~-~~~~~~y~~~k~~~~~lC~~Cf~~G~~~~~~ss~df~~~~~~~~~~~~~~~WT~~E 259 (559)
.....|+.|+. .+...||+|..|.+|+||..||..|. | ..|.|.++... ...|+..|
T Consensus 29 H~gv~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~~~~---H-~~H~f~~i~~~------~~~w~~~e 86 (98)
T 2dip_A 29 HLGIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSYC---H-LSHTFTFREKR------NQKWRSLE 86 (98)
T ss_dssp CCCCCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHTTS---G-GGSCEEECCSS------SCCCEECC
T ss_pred cCCCCCcCCCCCCcccCeEECCCCCCccHHHHHHccCC---C-CCCCeeEecCC------CCCCcccc
Confidence 33488999996 68888999999999999999999995 4 67999887653 33576544
No 50
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A
Probab=97.62 E-value=4e-05 Score=88.80 Aligned_cols=87 Identities=26% Similarity=0.471 Sum_probs=74.4
Q ss_pred CCCCCCCCCCCHHHHhhcccccCCCCCCCChhhHHHHHHHHHHHHHhCCCceeeHHHHh----hhccchHHHHHHHHHhh
Q 008612 22 HSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVR----KSLVGDVSLLHKVFRLL 97 (559)
Q Consensus 22 ~~~wF~~~~i~~iE~~~~peff~~~~~~ktp~~Y~~~RN~ii~~yr~np~~~lt~t~~r----~~l~gD~~~i~rvh~FL 97 (559)
|.++|+.+.+|..|+.+||++-..- .....+|+.+||.|+..|+.||...++...|. |.+..|...|.+|++|+
T Consensus 179 ~~~r~p~~~~~~~e~~~f~~~~~~~--~~~~~~~~~~rn~i~~~w~~~P~~a~~~~~~~~~~~r~~~~~p~~i~~~~~~~ 256 (852)
T 2xag_A 179 FQSRLPHDRMTSQEAACFPDIISGP--QQTQKVFLFIRNRTLQLWLDNPKIQLTFEATLQQLEAPYNSDTVLVHRVHSYL 256 (852)
T ss_dssp HTTTCCTTSCCHHHHHHCHHHHTSC--HHHHHHHHHHHHHHHHHHHTCTTBCCCHHHHHHHCCTTTTSCHHHHHHHHHHH
T ss_pred HHhcCCCcccChHHHHHHHHHHHhh--hhhcCeeeEeecchhHHHhcCCHHHhhHHHHHHhCCCcccCCcHHHHHHHHHH
Confidence 5689999999999999999986531 12356899999999999999999999987764 55567999999999999
Q ss_pred hhhcccccccCCC
Q 008612 98 DEWGLINFGAVSR 110 (559)
Q Consensus 98 e~wGlIN~~~~~~ 110 (559)
.+||+||+++..+
T Consensus 257 ~~~~~~~~~~~~~ 269 (852)
T 2xag_A 257 ERHGLINFGIYKR 269 (852)
T ss_dssp HHTTSSSCSSCBC
T ss_pred HHHHHHhcCcccc
Confidence 9999999888753
No 51
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=97.53 E-value=8.3e-05 Score=62.04 Aligned_cols=54 Identities=17% Similarity=0.298 Sum_probs=45.4
Q ss_pred cCCccCCCCCC-CCCCceeEeccCCC---cccchhhhhcCCC-CCCCCCCCceeccCCC
Q 008612 193 LKGFKCGSCGE-QCNSGCYEYSKQGS---FVICEKCFKNGNY-GEDKSKDDFRFSDLGG 246 (559)
Q Consensus 193 ~~~~~C~~Cg~-~~~~~~y~~~k~~~---~~lC~~Cf~~G~~-~~~~ss~df~~~~~~~ 246 (559)
...+.|+.|+. .+...||+|..|.+ |+||..||..|.. ..|...|.|..+....
T Consensus 19 H~~~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~~~~ 77 (82)
T 2fc7_A 19 HVGFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIYRSS 77 (82)
T ss_dssp ESSCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEECSCC
T ss_pred eCcCCCCCCCCCcceeceEECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEeeCCC
Confidence 34578999996 67788999999999 9999999999974 4666889999887654
No 52
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=97.44 E-value=8.7e-05 Score=73.10 Aligned_cols=44 Identities=16% Similarity=0.319 Sum_probs=40.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCC------HHHHHHHcCCCCHHHHHHHHHc
Q 008612 252 GATWTEAETLLLLESVMRHGDN------WELVAQNVPTKSKLDCISKLIE 295 (559)
Q Consensus 252 ~~~WT~~E~~~LLe~Ie~~g~n------W~~Ia~~vg~kT~~eC~~~flq 295 (559)
...||.+|+.+||+.+++||.. |..||+++.+||..+|..||..
T Consensus 8 k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~ 57 (246)
T 1ign_A 8 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRV 57 (246)
T ss_dssp CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHH
Confidence 5689999999999999999853 9999999999999999999975
No 53
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=97.11 E-value=0.0002 Score=54.71 Aligned_cols=43 Identities=9% Similarity=0.395 Sum_probs=36.6
Q ss_pred CccCCCCCCCCCCceeEeccCCCcccchhhhhcCCCCCCCCCCCceecc
Q 008612 195 GFKCGSCGEQCNSGCYEYSKQGSFVICEKCFKNGNYGEDKSKDDFRFSD 243 (559)
Q Consensus 195 ~~~C~~Cg~~~~~~~y~~~k~~~~~lC~~Cf~~G~~~~~~ss~df~~~~ 243 (559)
.+.|+.|+..+ ..||+|..|.+|+||..||..|. | .|.+.++.
T Consensus 6 ~~~Cd~C~~~i-g~R~~C~~C~dyDLC~~C~~~~~---H--~H~m~~~~ 48 (52)
T 1tot_A 6 VYTCNECKHHV-ETRWHCTVCEDYDLCINCYNTKS---H--THKMVKWG 48 (52)
T ss_dssp CEEETTTTEEE-SSEEEESSSSSCEECHHHHHHHC---C--CSSEEEEC
T ss_pred EEECCCCCCCC-cceEEcCCCCCchhHHHHHhCCC---C--CCceEEec
Confidence 47899999985 67999999999999999999986 2 47777764
No 54
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=96.06 E-value=0.0079 Score=51.19 Aligned_cols=43 Identities=21% Similarity=0.274 Sum_probs=40.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHc-----CCCCHHHHHHHHHc
Q 008612 253 ATWTEAETLLLLESVMRHGDNWELVAQNV-----PTKSKLDCISKLIE 295 (559)
Q Consensus 253 ~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~v-----g~kT~~eC~~~flq 295 (559)
..||.+|+..|++.+++||-.|--|++.. +.||-++-..+|..
T Consensus 31 ~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~ 78 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYH 78 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHH
Confidence 68999999999999999999999999998 47999999999965
No 55
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=95.99 E-value=0.0059 Score=47.62 Aligned_cols=44 Identities=16% Similarity=0.357 Sum_probs=39.8
Q ss_pred CCCCCHHHHHHHHHHHHHc--------C-CCHHHHHH-HcCCCCHHHHHHHHHc
Q 008612 252 GATWTEAETLLLLESVMRH--------G-DNWELVAQ-NVPTKSKLDCISKLIE 295 (559)
Q Consensus 252 ~~~WT~~E~~~LLe~Ie~~--------g-~nW~~Ia~-~vg~kT~~eC~~~flq 295 (559)
...+|.+|+..|++.|..| | .-|+.+++ .+..+|-..|+.||++
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k 55 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLK 55 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHH
Confidence 3579999999999999999 4 47999999 8999999999999986
No 56
>2cuj_A Transcriptional adaptor 2-like; transcriptional regulation, nuclear protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.18
Probab=95.95 E-value=0.018 Score=50.35 Aligned_cols=70 Identities=23% Similarity=0.366 Sum_probs=60.4
Q ss_pred CCCCCCHHHHhhcccccCCCCCCCChhhHHHHHHHHHHHHHhCCCceeeHHHHhhhccchHHHHHHHHHhhhhhcccc
Q 008612 27 RWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLIN 104 (559)
Q Consensus 27 ~~~~i~~iE~~~~peff~~~~~~ktp~~Y~~~RN~ii~~yr~np~~~lt~t~~r~~l~gD~~~i~rvh~FLe~wGlIN 104 (559)
+.+-+|+-|++-+-.. .=.|..|+.+.+.||.-+..+. .++.++||+.+.-|++-..||++||.+.|+|+
T Consensus 37 g~~LLs~~E~~LCs~l------rL~P~~YL~iK~~Li~E~~k~g--~lkk~dA~~l~kID~~K~~rIydff~~~GWi~ 106 (108)
T 2cuj_A 37 GTEKLNEKEKELCQVV------RLVPGAYLEYKSALLNECHKQG--GLRLAQARALIKIDVNKTRKIYDFLIREGYIT 106 (108)
T ss_dssp TTTTSCHHHHHHHHHT------TCCHHHHHHHHHHHHHHHHHSS--CCCHHHHHHHHTSCHHHHHHHHHHHHTTTSSC
T ss_pred CchhcCHHHHHHHHHh------CCCHHHHHHHHHHHHHHHHHcC--CCcHHHHHHHhcccHHHHHHHHHHHHHcCCCC
Confidence 3568899999888655 2379999999999999986543 39999999999999999999999999999996
No 57
>2aqe_A Transcriptional adaptor 2, ADA2 alpha; helix-turn-helix; NMR {Mus musculus} SCOP: a.4.1.18 PDB: 2aqf_A
Probab=95.92 E-value=0.015 Score=49.20 Aligned_cols=70 Identities=23% Similarity=0.366 Sum_probs=60.8
Q ss_pred CCCCCCHHHHhhcccccCCCCCCCChhhHHHHHHHHHHHHHhCCCceeeHHHHhhhccchHHHHHHHHHhhhhhcccc
Q 008612 27 RWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLIN 104 (559)
Q Consensus 27 ~~~~i~~iE~~~~peff~~~~~~ktp~~Y~~~RN~ii~~yr~np~~~lt~t~~r~~l~gD~~~i~rvh~FLe~wGlIN 104 (559)
+.+-+|+-|++-+-.. .=.|..|+.+...||.-+..+. .++.++||..+.-|++-..||+.||.+.|+|+
T Consensus 19 ~~~lLs~~E~~LC~~l------rL~P~~YL~~K~~li~E~~~~g--~l~k~da~~~~kiD~~K~~~iydf~~~~Gwi~ 88 (90)
T 2aqe_A 19 GTEKLNEKEKELCQVV------RLVPGAYLEYKSALLNECHKQG--GLRLAQARALIKIDVNKTRKIYDFLIREGYIT 88 (90)
T ss_dssp STTTSCHHHHHHHHHT------TCCHHHHHHHHHHHHHHHHHHS--CCCHHHHHTTSSSSSHHHHHHHHHHHHTTSSC
T ss_pred CchhcCHHHHHHHHHh------CCCHHHHHHHHHHHHHHHHHcC--CCcHHHHHHHHcccHHHHHHHHHHHHHcCCCC
Confidence 5678899999988655 2379999999999999886543 38999999999999999999999999999996
No 58
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=95.83 E-value=0.0038 Score=51.98 Aligned_cols=45 Identities=24% Similarity=0.369 Sum_probs=37.6
Q ss_pred CCCCCHHHHHHHHHHHHHcC----------CCHHHHHHHcC----CCCHHHHHHHHHcC
Q 008612 252 GATWTEAETLLLLESVMRHG----------DNWELVAQNVP----TKSKLDCISKLIEL 296 (559)
Q Consensus 252 ~~~WT~~E~~~LLe~Ie~~g----------~nW~~Ia~~vg----~kT~~eC~~~flqL 296 (559)
...||.+|+++||++..... .-|+.||+.|. .||+.||..+|-.|
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL 62 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNL 62 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 46799999999999996532 27999999876 69999999999653
No 59
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=95.80 E-value=0.01 Score=49.97 Aligned_cols=44 Identities=18% Similarity=0.450 Sum_probs=40.7
Q ss_pred CCCCHHHHHHHHHHHHHcC---CCHHHHHHHcCCCCHHHHHHHHHcC
Q 008612 253 ATWTEAETLLLLESVMRHG---DNWELVAQNVPTKSKLDCISKLIEL 296 (559)
Q Consensus 253 ~~WT~~E~~~LLe~Ie~~g---~nW~~Ia~~vg~kT~~eC~~~flqL 296 (559)
--||.+|+..+|...++-| +-|..||+.+|+||+.|...||-+|
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~L 80 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFREL 80 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHH
Confidence 3599999999999999998 5999999999999999999999763
No 60
>2elj_A Transcriptional adapter 2; YDR448W, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Saccharomyces cerevisiae}
Probab=95.44 E-value=0.032 Score=46.95 Aligned_cols=70 Identities=13% Similarity=0.217 Sum_probs=60.4
Q ss_pred CCCCCCHHHHhhcccccCCCCCCCChhhHHHHHHHHHHHHHhCCCceeeHHHHhhhccchHHHHHHHHHhhhhhccc
Q 008612 27 RWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLI 103 (559)
Q Consensus 27 ~~~~i~~iE~~~~peff~~~~~~ktp~~Y~~~RN~ii~~yr~np~~~lt~t~~r~~l~gD~~~i~rvh~FLe~wGlI 103 (559)
+.+-+|+-|++-+-.. .=.|..|+.+.+.||.-+..+ ...++.++||+.+.-|++-..||++||.+.|+|
T Consensus 19 ~~~lLs~~E~~LC~~l------rL~P~~YL~~K~~Li~E~~k~-g~~lkk~da~~~~kiD~~K~~~iydf~~~~Gwi 88 (88)
T 2elj_A 19 DYALLSNDEQQLCIQL------KILPKPYLVLKEVMFRELLKT-GGNLSKSACRELLNIDPIKANRIYDFFQSQNWM 88 (88)
T ss_dssp TCSSSCHHHHHHHHHT------TCCHHHHHHHHHHHHHHHHHH-SSCCCHHHHHHHTTSCHHHHHHHHHHHHHTTCC
T ss_pred CchhcCHHHHHHHHHh------CCCHHHHHHHHHHHHHHHHHh-CCCccHHHHHHHHcccHHHHHHHHHHHHHcCCC
Confidence 5678899999887655 237999999999999988764 356899999999999999999999999999987
No 61
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=95.18 E-value=0.0034 Score=67.82 Aligned_cols=51 Identities=18% Similarity=0.255 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHHcCCcCCCC
Q 008612 252 GATWTEAETLLLLESVMRHGDNWELVAQNVPTKSKLDCISKLIELPFGEFM 302 (559)
Q Consensus 252 ~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~vg~kT~~eC~~~flqLPIeD~~ 302 (559)
...||.+|..++.+++.+||.||..|+++|++||..+|+.+|..---...|
T Consensus 189 ~d~WT~eE~~lFe~al~~yGKdF~~I~~~lp~Ksv~e~V~yYY~WKKt~~y 239 (482)
T 2xag_B 189 PDEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKKTRTK 239 (482)
T ss_dssp ---------------------------------------------------
T ss_pred ccccCHHHHHHHHHHHHHcCccHHHHHHHcCCCCHHHHHHHhccccccccH
Confidence 458999999999999999999999999999999999999999754444333
No 62
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=95.02 E-value=0.021 Score=58.42 Aligned_cols=41 Identities=20% Similarity=0.353 Sum_probs=38.2
Q ss_pred CCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCCCCHHHHHHHH
Q 008612 253 ATWTEAETLLLLESVMRHG-DNWELVAQNVPTKSKLDCISKL 293 (559)
Q Consensus 253 ~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~vg~kT~~eC~~~f 293 (559)
..||..+-..++.|+++|| ++|..||..|++||++|...+|
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~ 152 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYN 152 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHH
Confidence 5799999999999999999 8999999999999999996655
No 63
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=93.25 E-value=0.0083 Score=47.93 Aligned_cols=43 Identities=16% Similarity=0.376 Sum_probs=39.6
Q ss_pred CCCCHHHHHHHHHHHHHcCC---CHHHHHHHcCCCCHHHHHHHHHcC
Q 008612 253 ATWTEAETLLLLESVMRHGD---NWELVAQNVPTKSKLDCISKLIEL 296 (559)
Q Consensus 253 ~~WT~~E~~~LLe~Ie~~g~---nW~~Ia~~vg~kT~~eC~~~flqL 296 (559)
--||.+|+..+|...++-|. -|..||+.+ +||++|...+|.+|
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~L 60 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQL 60 (70)
Confidence 46999999999999999994 999999999 79999999999875
No 64
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=92.53 E-value=0.17 Score=42.92 Aligned_cols=44 Identities=20% Similarity=0.268 Sum_probs=39.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcC-----CCCHHHHHHHHHc
Q 008612 252 GATWTEAETLLLLESVMRHGDNWELVAQNVP-----TKSKLDCISKLIE 295 (559)
Q Consensus 252 ~~~WT~~E~~~LLe~Ie~~g~nW~~Ia~~vg-----~kT~~eC~~~flq 295 (559)
+..||.+|+..|++.+++|+-.|--|++... .||-++-..||.+
T Consensus 30 ~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~ 78 (93)
T 4iej_A 30 DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYH 78 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHH
Confidence 3679999999999999999999999998763 6999999999965
No 65
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=91.44 E-value=0.12 Score=52.05 Aligned_cols=30 Identities=27% Similarity=0.608 Sum_probs=27.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CCHHHHHHH
Q 008612 251 HGATWTEAETLLLLESVMRHG-DNWELVAQN 280 (559)
Q Consensus 251 ~~~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~ 280 (559)
.+..|+.+|+..||-||.+|| |+|+.|..-
T Consensus 167 W~c~W~~~dD~~LLvGIykyGyG~We~Ir~D 197 (270)
T 2xb0_X 167 WSSNWTKEEDEKLLIGVFKYGYGSWTQIRDD 197 (270)
T ss_dssp SSSCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred CCCCcChHHHHHHHHHHHHHcCCcHHHHhcC
Confidence 467899999999999999999 999999753
No 66
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=91.07 E-value=0.21 Score=47.80 Aligned_cols=29 Identities=21% Similarity=0.576 Sum_probs=26.4
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHH
Q 008612 252 GATWTEAETLLLLESVMRHG-DNWELVAQN 280 (559)
Q Consensus 252 ~~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~ 280 (559)
...||.+|+..||-||.+|| |+|+.|-.-
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D 163 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKMD 163 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHhC
Confidence 56799999999999999999 999999764
No 67
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=87.56 E-value=0.95 Score=35.76 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=36.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCC---HHHHHHHcC--CCCHHHHHHHH
Q 008612 252 GATWTEAETLLLLESVMRHGDN---WELVAQNVP--TKSKLDCISKL 293 (559)
Q Consensus 252 ~~~WT~~E~~~LLe~Ie~~g~n---W~~Ia~~vg--~kT~~eC~~~f 293 (559)
.-.||.+....+++||++.|.+ |..|-+.++ +-|..++..|.
T Consensus 7 r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHL 53 (64)
T 1irz_A 7 RVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHL 53 (64)
T ss_dssp SCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHH
Confidence 5679999999999999999955 889999988 46999988875
No 68
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=86.59 E-value=0.7 Score=44.08 Aligned_cols=42 Identities=19% Similarity=0.237 Sum_probs=35.4
Q ss_pred CCCCCHHHHHHHHHHHHHcC---CCHHHHHHHcC--CCCHHHHHHHH
Q 008612 252 GATWTEAETLLLLESVMRHG---DNWELVAQNVP--TKSKLDCISKL 293 (559)
Q Consensus 252 ~~~WT~~E~~~LLe~Ie~~g---~nW~~Ia~~vg--~kT~~eC~~~f 293 (559)
-..||..|...|+-++.+|| +.|+.|++... .||.++....+
T Consensus 7 ~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~ 53 (211)
T 4b4c_A 7 IKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLG 53 (211)
T ss_dssp -CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHH
Confidence 46799999999999999999 68999998754 78988876533
No 69
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=82.46 E-value=1.3 Score=46.35 Aligned_cols=42 Identities=12% Similarity=0.240 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHHHHHHHcC-CCHHHHHHHcC-CCCHHHHHHHHHc
Q 008612 253 ATWTEAETLLLLESVMRHG-DNWELVAQNVP-TKSKLDCISKLIE 295 (559)
Q Consensus 253 ~~WT~~E~~~LLe~Ie~~g-~nW~~Ia~~vg-~kT~~eC~~~flq 295 (559)
..||..+-..++.|.++|| +|-..||..|+ +||++|.. .|.+
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~ 167 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAK 167 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHH
Confidence 5799999999999999999 89999999998 99999988 5554
No 70
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=80.52 E-value=1.1 Score=45.70 Aligned_cols=46 Identities=20% Similarity=0.330 Sum_probs=39.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcC----CCHHHHHH------------HcCCCCHHHHHHHHHcC
Q 008612 251 HGATWTEAETLLLLESVMRHG----DNWELVAQ------------NVPTKSKLDCISKLIEL 296 (559)
Q Consensus 251 ~~~~WT~~E~~~LLe~Ie~~g----~nW~~Ia~------------~vg~kT~~eC~~~flqL 296 (559)
.+..||.+|+..||-+|.+|| |+|+.|-. ++-+||+.+.-.|.-.|
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tL 272 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTL 272 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHH
Confidence 467899999999999999999 79999973 45589999988887543
No 71
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=69.72 E-value=36 Score=37.65 Aligned_cols=59 Identities=15% Similarity=0.311 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 008612 493 REIEHLVAIIIETQMKKLHSKINYFDDLELIMEKEYNEMMQLKECLVEERIDVLERALKTGV 554 (559)
Q Consensus 493 reI~~Lv~~lIe~QlkKLElKLk~feeLE~~~e~Er~~LE~~rq~L~~eR~~~~~~~~~~g~ 554 (559)
++.++-....++.|-+-.+..++++.+ -|++||+++-+..+..+..|+.....-++.|+
T Consensus 507 ~~~~~~~~~~~~~~~~~~~e~~~ql~~---kme~~~~~~~~e~~~~~~~~~~~~~~~~~~g~ 565 (592)
T 1f5n_A 507 HEMQRKNEQMMEQKERSYQEHLKQLTE---KMENDRVQLLKEQERTLALKLQEQEQLLKEGF 565 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556667777777766666554 79999999999999999999999888888885
No 72
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=61.72 E-value=12 Score=29.63 Aligned_cols=45 Identities=18% Similarity=0.319 Sum_probs=34.4
Q ss_pred CccCCCCCCCCCCceeEeccCCCcccchhhhhcCCCCCCCCCCCceec
Q 008612 195 GFKCGSCGEQCNSGCYEYSKQGSFVICEKCFKNGNYGEDKSKDDFRFS 242 (559)
Q Consensus 195 ~~~C~~Cg~~~~~~~y~~~k~~~~~lC~~Cf~~G~~~~~~ss~df~~~ 242 (559)
.+-|..|..+.+ ++|.-|.+-.-|..||.++........|..++.
T Consensus 8 ~pWC~ICneDAt---lrC~gCdgDLYC~rC~rE~H~~~d~r~Hk~v~y 52 (67)
T 2d8v_A 8 LPWCCICNEDAT---LRCAGCDGDLYCARCFREGHDNFDLKEHQTSPY 52 (67)
T ss_dssp CSSCTTTCSCCC---EEETTTTSEEECSSHHHHHTTTSSTTTCCEECC
T ss_pred CCeeEEeCCCCe---EEecCCCCceehHHHHHHHccchhhhccceeec
Confidence 478999998854 899999888999999999985444444544443
No 73
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=57.89 E-value=8.4 Score=30.48 Aligned_cols=50 Identities=14% Similarity=0.196 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhCCCceeeHHHHhhhc-----cchHHHHHHHHHhhhhhccccccc
Q 008612 58 YRDFMINKYREEPSRRLTFTQVRKSL-----VGDVSLLHKVFRLLDEWGLINFGA 107 (559)
Q Consensus 58 ~RN~ii~~yr~np~~~lt~t~~r~~l-----~gD~~~i~rvh~FLe~wGlIN~~~ 107 (559)
-|-.|++.....+...+|+.+.-..+ .-+...|.|....|+..|+|.-..
T Consensus 18 ~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~~ 72 (83)
T 2fu4_A 18 PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHN 72 (83)
T ss_dssp HHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEEe
Confidence 45677776654432689999988877 347899999999999999997433
No 74
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=57.53 E-value=84 Score=26.30 Aligned_cols=46 Identities=20% Similarity=0.298 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008612 501 IIIETQMKKLHSKINYFDDLELIMEKEYNEMMQLKECLVEERIDVL 546 (559)
Q Consensus 501 ~lIe~QlkKLElKLk~feeLE~~~e~Er~~LE~~rq~L~~eR~~~~ 546 (559)
..|+.+|+.++..+..++.-|..+.+++..+.++.-.+-.+|.++-
T Consensus 35 ~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~ 80 (96)
T 3q8t_A 35 KVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVE 80 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999999999999999998887764
No 75
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=57.35 E-value=12 Score=29.00 Aligned_cols=52 Identities=10% Similarity=0.048 Sum_probs=41.7
Q ss_pred hhhHHHHHHHHHHHHHhCCCceeeHHHHhhhccchHHHHHHHHHhhhhhcccc
Q 008612 52 PKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLIN 104 (559)
Q Consensus 52 p~~Y~~~RN~ii~~yr~np~~~lt~t~~r~~l~gD~~~i~rvh~FLe~wGlIN 104 (559)
|..-...|..|++....++ .+++.++..+.+.-.-..+.|+..=|+..|+|-
T Consensus 5 ~~~m~~~~~~IL~~L~~~~-~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~ 56 (67)
T 2heo_A 5 LSTGDNLEQKILQVLSDDG-GPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVS 56 (67)
T ss_dssp ----CHHHHHHHHHHHHHC-SCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEE
T ss_pred cccccHHHHHHHHHHHHcC-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEe
Confidence 3333347889999887653 679999999999888999999999999999985
No 76
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=56.36 E-value=9.8 Score=39.80 Aligned_cols=46 Identities=22% Similarity=0.379 Sum_probs=38.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcC----CCHHHHHHH------------cCCCCHHHHHHHHHcC
Q 008612 251 HGATWTEAETLLLLESVMRHG----DNWELVAQN------------VPTKSKLDCISKLIEL 296 (559)
Q Consensus 251 ~~~~WT~~E~~~LLe~Ie~~g----~nW~~Ia~~------------vg~kT~~eC~~~flqL 296 (559)
.+..||.+|+..||=+|.+|| |+|+.|-.. +.+||+.++-.|.-.|
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tL 288 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTL 288 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHH
Confidence 467899999999999999999 789999554 3489999987776543
No 77
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=52.98 E-value=30 Score=27.25 Aligned_cols=47 Identities=9% Similarity=0.095 Sum_probs=39.1
Q ss_pred HHHHHHHHHhCCCceeeHHHHhhhccchHHHHHHHHHhhhhhccccccc
Q 008612 59 RDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGA 107 (559)
Q Consensus 59 RN~ii~~yr~np~~~lt~t~~r~~l~gD~~~i~rvh~FLe~wGlIN~~~ 107 (559)
|..|+.....++ .+|..+..+.+.-....+.|....|+..|+|-...
T Consensus 2 r~~Il~~L~~~~--~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~~~ 48 (81)
T 2htj_A 2 KNEILEFLNRHN--GGKTAEIAEALAVTDYQARYYLLLLEKAGMVQRSP 48 (81)
T ss_dssp HHHHHHHHHHSC--CCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHHHcC--CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEec
Confidence 677888766653 48999999988778899999999999999997543
No 78
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=50.86 E-value=9.4 Score=31.67 Aligned_cols=32 Identities=25% Similarity=0.517 Sum_probs=27.6
Q ss_pred CccCCCCCCCCCCceeEeccCCCcccchhhhhc
Q 008612 195 GFKCGSCGEQCNSGCYEYSKQGSFVICEKCFKN 227 (559)
Q Consensus 195 ~~~C~~Cg~~~~~~~y~~~k~~~~~lC~~Cf~~ 227 (559)
.+.|+.|+.......|+|..| +|.|-+.|...
T Consensus 47 ~~~C~~C~~~~~~~~Y~C~~C-~f~lH~~Ca~~ 78 (89)
T 1v5n_A 47 VYTCDKCEEEGTIWSYHCDEC-DFDLHAKCALN 78 (89)
T ss_dssp SCCCTTTSCCCCSCEEECTTT-CCCCCHHHHHC
T ss_pred CeEeCCCCCcCCCcEEEcCCC-CCeEcHHhcCC
Confidence 478999999988788999986 79999999753
No 79
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=49.36 E-value=1.2e+02 Score=28.18 Aligned_cols=34 Identities=21% Similarity=0.244 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 008612 523 IMEKEYNEMMQLKECLVEERIDVLERALKTGVSK 556 (559)
Q Consensus 523 ~~e~Er~~LE~~rq~L~~eR~~~~~~~~~~g~~~ 556 (559)
.+..=-+++...|++|..+|+.+..+.-+.|||.
T Consensus 114 kI~aL~~Ei~~Lr~qL~~~R~k~~~em~KeGip~ 147 (175)
T 3lay_A 114 KINAVAKEMESLGQKLDEQRVKRDVAMAQAGIPR 147 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3445556788899999999999999988889984
No 80
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=48.89 E-value=19 Score=31.55 Aligned_cols=48 Identities=17% Similarity=0.199 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhCCCceeeHHHHhhhc-----cchHHHHHHHHHhhhhhccccc
Q 008612 58 YRDFMINKYREEPSRRLTFTQVRKSL-----VGDVSLLHKVFRLLDEWGLINF 105 (559)
Q Consensus 58 ~RN~ii~~yr~np~~~lt~t~~r~~l-----~gD~~~i~rvh~FLe~wGlIN~ 105 (559)
-|-.|++....++...+|+.+.-..| .-+...|.|...+|...|||.-
T Consensus 19 qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 71 (136)
T 1mzb_A 19 PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVR 71 (136)
T ss_dssp HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 57788887775543789999987776 2378999999999999999973
No 81
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A
Probab=47.27 E-value=12 Score=30.19 Aligned_cols=31 Identities=19% Similarity=0.530 Sum_probs=21.6
Q ss_pred eeEeccC---CCcccchhhhhcCCCCCCCCCCCceecc
Q 008612 209 CYEYSKQ---GSFVICEKCFKNGNYGEDKSKDDFRFSD 243 (559)
Q Consensus 209 ~y~~~k~---~~~~lC~~Cf~~G~~~~~~ss~df~~~~ 243 (559)
.|+|..| ....||.+||.++. +..|+|.+..
T Consensus 17 ~Y~C~~C~~d~tc~lC~~CF~~~~----H~gH~~~~~~ 50 (75)
T 3ny3_A 17 TYSCRDCAVDPTCVLCMECFLGSI----HRDHRYRMTT 50 (75)
T ss_dssp EEEETTTBSSTTCCBCHHHHHTSG----GGGSCEEEEE
T ss_pred EEECccCCCCCCeeEChHHCCCCC----cCCceEEEEE
Confidence 4566554 45689999999886 2457777654
No 82
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=45.56 E-value=27 Score=30.32 Aligned_cols=54 Identities=7% Similarity=0.021 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHHHhCCCceeeHHHHhhhc-----cchHHHHHHHHHhhhhhcccccccC
Q 008612 54 IYKEYRDFMINKYREEPSRRLTFTQVRKSL-----VGDVSLLHKVFRLLDEWGLINFGAV 108 (559)
Q Consensus 54 ~Y~~~RN~ii~~yr~np~~~lt~t~~r~~l-----~gD~~~i~rvh~FLe~wGlIN~~~~ 108 (559)
..-.-|-.|++..... ...+|+.+.-..| .-+...+.|...+|...|||.=-..
T Consensus 8 r~T~qR~~Il~~l~~~-~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~~~~ 66 (131)
T 2o03_A 8 RSTRQRAAISTLLETL-DDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDTLHT 66 (131)
T ss_dssp HHHHHHHHHHHHHHHC-CSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEEEEC
T ss_pred CCCHHHHHHHHHHHhC-CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEEEEe
Confidence 4456788899987754 5789999987776 2378999999999999999974433
No 83
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Probab=43.67 E-value=15 Score=30.16 Aligned_cols=39 Identities=18% Similarity=0.453 Sum_probs=25.4
Q ss_pred CCCCCC--CceeEeccC---CCcccchhhhhcCCCCCCCCCCCceecc
Q 008612 201 CGEQCN--SGCYEYSKQ---GSFVICEKCFKNGNYGEDKSKDDFRFSD 243 (559)
Q Consensus 201 Cg~~~~--~~~y~~~k~---~~~~lC~~Cf~~G~~~~~~ss~df~~~~ 243 (559)
|+.... ...|+|..| +...||..||..+. +..|+|.+..
T Consensus 11 Cg~vf~~ge~~Y~C~~C~~d~tcvlC~~CF~~s~----H~gH~~~~~~ 54 (82)
T 3nis_A 11 CGRKFKIGEPLYRCHECGCDDTCVLCIHCFNPKD----HVNHHVCTDI 54 (82)
T ss_dssp CCCBCCTTCEEEEETTTBSSTTCCBCTTTCCGGG----GTTSCEEEEE
T ss_pred CCCcccCCCEEEEeeccCCCCCceEchhhCCCCC----cCCceEEEEE
Confidence 444443 235666655 46789999999885 3457887654
No 84
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=41.33 E-value=30 Score=30.87 Aligned_cols=51 Identities=12% Similarity=0.210 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHhCCCceeeHHHHhhhcc-----chHHHHHHHHHhhhhhcccccc
Q 008612 55 YKEYRDFMINKYREEPSRRLTFTQVRKSLV-----GDVSLLHKVFRLLDEWGLINFG 106 (559)
Q Consensus 55 Y~~~RN~ii~~yr~np~~~lt~t~~r~~l~-----gD~~~i~rvh~FLe~wGlIN~~ 106 (559)
.-.-|-.|++....++ ..+|+.+.-..|. -+...|.|...+|+..|||.=-
T Consensus 25 ~T~qR~~IL~~l~~~~-~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~ 80 (150)
T 2xig_A 25 NSKQREEVVSVLYRSG-THLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISVL 80 (150)
T ss_dssp CHHHHHHHHHHHHHCS-SCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHhCC-CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEEE
Confidence 3446788888887664 5899999877762 3789999999999999999843
No 85
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=40.98 E-value=22 Score=31.84 Aligned_cols=48 Identities=13% Similarity=0.254 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhCCCceeeHHHHhhhcc-----chHHHHHHHHHhhhhhccccc
Q 008612 58 YRDFMINKYREEPSRRLTFTQVRKSLV-----GDVSLLHKVFRLLDEWGLINF 105 (559)
Q Consensus 58 ~RN~ii~~yr~np~~~lt~t~~r~~l~-----gD~~~i~rvh~FLe~wGlIN~ 105 (559)
-|-.|++....++...+|+.+.-..|. -+...|.|...+|...|||.-
T Consensus 18 qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 70 (150)
T 2w57_A 18 PRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTR 70 (150)
T ss_dssp HHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 577788876654326899999877762 378999999999999999973
No 86
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=37.52 E-value=54 Score=28.43 Aligned_cols=54 Identities=7% Similarity=0.140 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHHHHhCCCcee-eHHHHhhhccchHHHHHHHHHhhhhhccccccc
Q 008612 53 KIYKEYRDFMINKYREEPSRRL-TFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGA 107 (559)
Q Consensus 53 ~~Y~~~RN~ii~~yr~np~~~l-t~t~~r~~l~gD~~~i~rvh~FLe~wGlIN~~~ 107 (559)
++|-.||+.|++ =...|...| +..+....+.--...+.+.+.-|+.-|||-...
T Consensus 18 QI~~~i~~~I~~-G~l~pG~~LPser~La~~~gVSr~tVReAl~~L~~eGlv~~~~ 72 (134)
T 4ham_A 18 QIVQKIKEQVVK-GVLQEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIITVK 72 (134)
T ss_dssp HHHHHHHHHHHH-TSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHHHHc-CCCCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEEc
Confidence 455566666655 234789999 888887778767899999999999999997543
No 87
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=36.91 E-value=26 Score=26.57 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHcCC
Q 008612 257 EAETLLLLESVMRHGDNWELVAQNVPT 283 (559)
Q Consensus 257 ~~E~~~LLe~Ie~~g~nW~~Ia~~vg~ 283 (559)
.-|...+.++++.+++|+.++|+.+|-
T Consensus 18 ~~E~~~i~~aL~~~~gn~~~aA~~LGi 44 (63)
T 3e7l_A 18 EFEKIFIEEKLREYDYDLKRTAEEIGI 44 (63)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHCc
Confidence 446778999999999999999999993
No 88
>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1
Probab=36.83 E-value=57 Score=31.53 Aligned_cols=35 Identities=14% Similarity=0.314 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhcCCCC
Q 008612 517 FDDLELIMEKEYNEMM----QLKECLVEERIDVLERALKTGVSK 556 (559)
Q Consensus 517 feeLE~~~e~Er~~LE----~~rq~L~~eR~~~~~~~~~~g~~~ 556 (559)
++.||.-+.+|..+|| ++++-||..|..++ +|||.
T Consensus 42 ~~~l~~e~~~ev~~lE~ky~~~~~Ply~kR~eII-----~~IP~ 80 (225)
T 2e50_A 42 IDRLNEQASEEILKVEQKYNKLRQPFFQKRSELI-----AKIPN 80 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH-----hcccc
Confidence 3444444555555554 55777899998888 47775
No 89
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=35.17 E-value=43 Score=29.62 Aligned_cols=48 Identities=19% Similarity=0.172 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhCCCceeeHHHHhhhcc-----chHHHHHHHHHhhhhhcccccc
Q 008612 58 YRDFMINKYREEPSRRLTFTQVRKSLV-----GDVSLLHKVFRLLDEWGLINFG 106 (559)
Q Consensus 58 ~RN~ii~~yr~np~~~lt~t~~r~~l~-----gD~~~i~rvh~FLe~wGlIN~~ 106 (559)
-|-.|++..... ...+|+.+.-..|. -+...|.|...+|...|||.--
T Consensus 23 qR~~Il~~L~~~-~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~ 75 (145)
T 2fe3_A 23 QRHAILEYLVNS-MAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKEL 75 (145)
T ss_dssp HHHHHHHHHHHC-SSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhC-CCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEEE
Confidence 567788877654 56899999877762 3689999999999999999743
No 90
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=33.15 E-value=53 Score=27.66 Aligned_cols=54 Identities=7% Similarity=0.086 Sum_probs=42.1
Q ss_pred hhhHHHHHHHHHHHHHhCCCcee-eHHHHhhhccchHHHHHHHHHhhhhhcccccc
Q 008612 52 PKIYKEYRDFMINKYREEPSRRL-TFTQVRKSLVGDVSLLHKVFRLLDEWGLINFG 106 (559)
Q Consensus 52 p~~Y~~~RN~ii~~yr~np~~~l-t~t~~r~~l~gD~~~i~rvh~FLe~wGlIN~~ 106 (559)
-.+|-.||+.|++- ...|...| |..+..+.+.---..+.+...-|+..|||-..
T Consensus 12 ~~i~~~i~~~I~~g-~~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~Gli~~~ 66 (113)
T 3tqn_A 12 QQLRDKIVEAIIDG-SYVEGEMIPSIRKISTEYQINPLTVSKAYQSLLDDNVIEKR 66 (113)
T ss_dssp HHHHHHHHHHHHHT-SSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHcC-CCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 45666777766652 34688899 89888888866688999999999999999644
No 91
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=32.60 E-value=61 Score=32.33 Aligned_cols=42 Identities=14% Similarity=0.121 Sum_probs=33.1
Q ss_pred CCCCCHHHHHHHHHHHHHcC---CCHHHHHHHcC--CCCHHHHHHHH
Q 008612 252 GATWTEAETLLLLESVMRHG---DNWELVAQNVP--TKSKLDCISKL 293 (559)
Q Consensus 252 ~~~WT~~E~~~LLe~Ie~~g---~nW~~Ia~~vg--~kT~~eC~~~f 293 (559)
.+.||+.|...|+-++.+|| +.|+.|+.--. .|+.+....-|
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~ 49 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETY 49 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHH
Confidence 46799999999999999999 68999986533 57766554444
No 92
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=32.51 E-value=68 Score=28.14 Aligned_cols=51 Identities=10% Similarity=0.083 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHHhCCCceeeHHHHhhhcc-----chHHHHHHHHHhhhhhccccc
Q 008612 54 IYKEYRDFMINKYREEPSRRLTFTQVRKSLV-----GDVSLLHKVFRLLDEWGLINF 105 (559)
Q Consensus 54 ~Y~~~RN~ii~~yr~np~~~lt~t~~r~~l~-----gD~~~i~rvh~FLe~wGlIN~ 105 (559)
++-.-|-.|++....++ ..+|+.+.-..|. -+...|.|...+|..-|||.-
T Consensus 11 r~T~qR~~Il~~L~~~~-~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 66 (139)
T 3mwm_A 11 RATRQRAAVSAALQEVE-EFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDV 66 (139)
T ss_dssp HHHHHHHHHHHHHTTCS-SCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEE
T ss_pred ccCHHHHHHHHHHHhCC-CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 45567889999776654 6999999877663 378999999999999999973
No 93
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=31.64 E-value=73 Score=27.16 Aligned_cols=51 Identities=22% Similarity=0.278 Sum_probs=39.9
Q ss_pred HHHHHHHHHhCCCceeeHHHHhhhccchHHHHHHHHHhhhhhcccccccCC
Q 008612 59 RDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGAVS 109 (559)
Q Consensus 59 RN~ii~~yr~np~~~lt~t~~r~~l~gD~~~i~rvh~FLe~wGlIN~~~~~ 109 (559)
+-.|+..-..+|..++|+.+..+.+.-+...+.|...-|+..|+|--...+
T Consensus 28 e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~~~~ 78 (123)
T 3r0a_A 28 DLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEKEILQRSQQN 78 (123)
T ss_dssp HHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeeCCc
Confidence 334555444466545999999999988999999999999999999865443
No 94
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=30.61 E-value=43 Score=29.70 Aligned_cols=46 Identities=17% Similarity=0.286 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhCCCceeeHHHHhhhcc-----chHHHHHHHHHhhhhhccccc
Q 008612 58 YRDFMINKYREEPSRRLTFTQVRKSLV-----GDVSLLHKVFRLLDEWGLINF 105 (559)
Q Consensus 58 ~RN~ii~~yr~np~~~lt~t~~r~~l~-----gD~~~i~rvh~FLe~wGlIN~ 105 (559)
-|..|++....++ .+|+.+.-..|. -+...|.|...+|..-|||.-
T Consensus 20 qR~~Il~~l~~~~--h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~ 70 (145)
T 3eyy_A 20 QRQLVLEAVDTLE--HATPDDILGEVRKTASGINISTVYRTLELLEELGLVSH 70 (145)
T ss_dssp HHHHHHHHHHHHS--SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHhcC--CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEE
Confidence 4667777666654 899988765552 378999999999999999974
No 95
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=30.40 E-value=28 Score=29.14 Aligned_cols=46 Identities=22% Similarity=0.521 Sum_probs=30.2
Q ss_pred CccCCCCCCCCC-----CceeEeccCCCcccchhhhh----cCCCCCCCCCCCcee
Q 008612 195 GFKCGSCGEQCN-----SGCYEYSKQGSFVICEKCFK----NGNYGEDKSKDDFRF 241 (559)
Q Consensus 195 ~~~C~~Cg~~~~-----~~~y~~~k~~~~~lC~~Cf~----~G~~~~~~ss~df~~ 241 (559)
...|.+||.+.. .+++.|..| .|-+|-.||. +|+.--..-+..|.+
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC-~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNEC-GFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSS-CCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeecc-CChhhHHHHHHHHhccCccccccCCcccc
Confidence 468999998864 346778885 7889999985 344333333445554
No 96
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.87 E-value=39 Score=30.42 Aligned_cols=84 Identities=17% Similarity=0.270 Sum_probs=45.7
Q ss_pred CccCCCCCCCCCCceeEeccCCCcccchhhhhcCC-CCCCCCCCCceeccCCCCCCCCCCCCCHHHHHHHHHHHHHcC-C
Q 008612 195 GFKCGSCGEQCNSGCYEYSKQGSFVICEKCFKNGN-YGEDKSKDDFRFSDLGGNSLTHGATWTEAETLLLLESVMRHG-D 272 (559)
Q Consensus 195 ~~~C~~Cg~~~~~~~y~~~k~~~~~lC~~Cf~~G~-~~~~~ss~df~~~~~~~~~~~~~~~WT~~E~~~LLe~Ie~~g-~ 272 (559)
-..|.-|+.. .+.+-+.. -++.+|.+|-.--+ +|.|.+ ++... .-..||.+|...|.. .| .
T Consensus 29 N~~CaDCga~--~P~WaS~n-~GvfiC~~CsgiHR~LG~hiS-----~VkSl-----~ld~w~~~~l~~m~~----~GN~ 91 (141)
T 2crr_A 29 NKYCADCEAK--GPRWASWN-IGVFICIRCAGIHRNLGVHIS-----RVKSV-----NLDQWTAEQIQCMQD----MGNT 91 (141)
T ss_dssp GSSCSSSCCS--SCCSEETT-TTEECCHHHHHHHHHHCTTTC-----CCBCS-----SSSCCCHHHHHHHHH----THHH
T ss_pred CCcCCCCCCC--CCCeEEec-cCeEEhhhhhHhHhcCCCCCC-----eeeEC-----CCCCCCHHHHHHHHH----HccH
Confidence 3578888865 34444544 57889999976443 565543 22221 124699987655543 23 2
Q ss_pred CHHHHHH-HcC----CCCHHHHHHHHHc
Q 008612 273 NWELVAQ-NVP----TKSKLDCISKLIE 295 (559)
Q Consensus 273 nW~~Ia~-~vg----~kT~~eC~~~flq 295 (559)
..+.+=+ ++. .-++.+-+..||+
T Consensus 92 ~an~~~e~~lp~~~~~P~~~~~~e~fIr 119 (141)
T 2crr_A 92 KARLLYEANLPENFRRPQTDQAVEFFIR 119 (141)
T ss_dssp HHHHHGGGSCCTTCCCCCSHHHHHHHHH
T ss_pred HHHHHHHhcCCcccCCCCchHHHHHHHH
Confidence 2233321 222 1244566777876
No 97
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=28.74 E-value=30 Score=27.40 Aligned_cols=33 Identities=21% Similarity=0.386 Sum_probs=21.9
Q ss_pred CccCCCCCCCCCCceeEeccCCCcccchhhhhcC
Q 008612 195 GFKCGSCGEQCNSGCYEYSKQGSFVICEKCFKNG 228 (559)
Q Consensus 195 ~~~C~~Cg~~~~~~~y~~~k~~~~~lC~~Cf~~G 228 (559)
...|++||+.-..+...-.- ++..||..|....
T Consensus 18 ~~~CSFCGK~e~eV~~LIaG-pgvyICdeCI~~c 50 (67)
T 1ovx_A 18 LLYCSFCGKSQHEVRKLIAG-PSVYICDECVDLC 50 (67)
T ss_dssp CCCCTTTCCCTTTSSSEEEC-SSCEEEHHHHHHH
T ss_pred CcEecCCCCCHHHHcccCCC-CCCChhHHHHHHH
Confidence 36899999987665332222 3567999997544
No 98
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=28.45 E-value=85 Score=27.02 Aligned_cols=53 Identities=8% Similarity=0.087 Sum_probs=42.2
Q ss_pred hhhHHHHHHHHHHHHHhCCCcee-eHHHHhhhccchHHHHHHHHHhhhhhccccc
Q 008612 52 PKIYKEYRDFMINKYREEPSRRL-TFTQVRKSLVGDVSLLHKVFRLLDEWGLINF 105 (559)
Q Consensus 52 p~~Y~~~RN~ii~~yr~np~~~l-t~t~~r~~l~gD~~~i~rvh~FLe~wGlIN~ 105 (559)
-.+|-.||+.|+.. ...|...| +..+..+.+.--...+.+...-|+..|||-.
T Consensus 14 ~~i~~~l~~~I~~g-~~~~G~~lPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~ 67 (126)
T 3by6_A 14 LQLVDRIKNEVATD-VLSANDQLPSVRETALQEKINPNTVAKAYKELEAQKVIRT 67 (126)
T ss_dssp HHHHHHHHHHHHTT-SSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHhC-CCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 35677777777653 24688999 9999888887678899999999999999953
No 99
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=27.15 E-value=59 Score=28.29 Aligned_cols=54 Identities=13% Similarity=0.082 Sum_probs=44.2
Q ss_pred hhhHHHHHHHHHHHHHhCCCcee-eHHHHhhhccchHHHHHHHHHhhhhhcccccc
Q 008612 52 PKIYKEYRDFMINKYREEPSRRL-TFTQVRKSLVGDVSLLHKVFRLLDEWGLINFG 106 (559)
Q Consensus 52 p~~Y~~~RN~ii~~yr~np~~~l-t~t~~r~~l~gD~~~i~rvh~FLe~wGlIN~~ 106 (559)
-.+|-.||+.|+.- ...|...| +..+..+.+.---..+.+...-|+..|||-..
T Consensus 7 ~~i~~~i~~~I~~g-~l~~G~~LPse~~La~~~gvSr~tVr~Al~~L~~~Gli~~~ 61 (129)
T 2ek5_A 7 KQIASLIEDSIVDG-TLSIDQRVPSTNELAAFHRINPATARNGLTLLVEAGILYKK 61 (129)
T ss_dssp HHHHHHHHHHHHTT-SSCTTSCBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEEEE
T ss_pred HHHHHHHHHHHHhC-CCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEe
Confidence 46788888888763 45688999 89888888876788999999999999999643
No 100
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=25.99 E-value=66 Score=29.10 Aligned_cols=47 Identities=11% Similarity=0.195 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhCCCceeeHHHHhhhcc-------chHHHHHHHHHhhhhhccccc
Q 008612 58 YRDFMINKYREEPSRRLTFTQVRKSLV-------GDVSLLHKVFRLLDEWGLINF 105 (559)
Q Consensus 58 ~RN~ii~~yr~np~~~lt~t~~r~~l~-------gD~~~i~rvh~FLe~wGlIN~ 105 (559)
-|-.|++....++ ..+|+.+.-..|. -+...|.|...+|..-|||.=
T Consensus 34 qR~~IL~~L~~~~-~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~ 87 (162)
T 4ets_A 34 QREVLLKTLYHSD-THYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTS 87 (162)
T ss_dssp HHHHHHHHHHSCC-SCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHhCC-CCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 5778888776654 8999999755542 258899999999999999973
No 101
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=25.87 E-value=1e+02 Score=24.49 Aligned_cols=38 Identities=13% Similarity=0.137 Sum_probs=33.1
Q ss_pred ceeeHHHHhhhccchHHHHHHHHHhhhhhcccccccCC
Q 008612 72 RRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGAVS 109 (559)
Q Consensus 72 ~~lt~t~~r~~l~gD~~~i~rvh~FLe~wGlIN~~~~~ 109 (559)
..+|.++..+.+.-+...+.|+..-|+..|+|.....+
T Consensus 35 ~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~~~ 72 (109)
T 2d1h_A 35 KPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKTE 72 (109)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC-
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeccc
Confidence 35999999999888999999999999999999876554
No 102
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=25.63 E-value=43 Score=25.03 Aligned_cols=31 Identities=23% Similarity=0.479 Sum_probs=20.7
Q ss_pred ccCCCCCCCCCCceeEeccCCCcccchhhhhc
Q 008612 196 FKCGSCGEQCNSGCYEYSKQGSFVICEKCFKN 227 (559)
Q Consensus 196 ~~C~~Cg~~~~~~~y~~~k~~~~~lC~~Cf~~ 227 (559)
..|++||+.-..+...-.- ++..+|..|...
T Consensus 12 ~~CSFCGk~~~ev~~LIaG-pgv~IC~eCi~~ 42 (51)
T 2ds5_A 12 LYCSFCGKSQHEVRKLIAG-PSVYICDECVDL 42 (51)
T ss_dssp CBCTTTCCBTTTSSCEEEC-SSCEEEHHHHHH
T ss_pred cEecCCCCCHHHhcccCCC-CCCEehHHHHHH
Confidence 6899999987665332222 356789998643
No 103
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=25.45 E-value=1.5e+02 Score=29.12 Aligned_cols=23 Identities=4% Similarity=0.066 Sum_probs=21.3
Q ss_pred CHHHHHHHcCCCCHHHHHHHHHc
Q 008612 273 NWELVAQNVPTKSKLDCISKLIE 295 (559)
Q Consensus 273 nW~~Ia~~vg~kT~~eC~~~flq 295 (559)
-|..||++..++|...-+.+|..
T Consensus 173 ~fk~ia~~~P~HT~~SWRdRyrK 195 (246)
T 1ign_A 173 FFKHFAEEHAAHTENAWRDRFRK 195 (246)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCCChhhHHHHHHH
Confidence 69999999999999999999974
No 104
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=25.29 E-value=56 Score=31.35 Aligned_cols=30 Identities=20% Similarity=0.336 Sum_probs=21.1
Q ss_pred ccCCCCCCCCCCc--eeEeccCCCcccchhhhh
Q 008612 196 FKCGSCGEQCNSG--CYEYSKQGSFVICEKCFK 226 (559)
Q Consensus 196 ~~C~~Cg~~~~~~--~y~~~k~~~~~lC~~Cf~ 226 (559)
..|..|+...+.. +.||..| +...|..|-.
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~C-G~v~C~~Cs~ 196 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRAC-GQIFCGKCSS 196 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTT-CCEECTTTCC
T ss_pred CCCcCcCCCCCccccccccCCC-cCEeChhhcC
Confidence 4788888776643 5788886 5667888743
No 105
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=25.05 E-value=52 Score=29.55 Aligned_cols=56 Identities=16% Similarity=0.244 Sum_probs=34.5
Q ss_pred CccCCCCCCCCCCceeEeccCCCcccchhhhhcCC-CCCCCCCCCceeccCCCCCCCCCCCCCHHHHHHH
Q 008612 195 GFKCGSCGEQCNSGCYEYSKQGSFVICEKCFKNGN-YGEDKSKDDFRFSDLGGNSLTHGATWTEAETLLL 263 (559)
Q Consensus 195 ~~~C~~Cg~~~~~~~y~~~k~~~~~lC~~Cf~~G~-~~~~~ss~df~~~~~~~~~~~~~~~WT~~E~~~L 263 (559)
-..|.-||.. .+.+-+.. -++.+|.+|-.--+ +|.|.+ |++ .. .-..||.++...|
T Consensus 36 N~~CaDCga~--~P~WaS~n-~GvfiC~~CsgiHR~LG~hiS---~Vr--Sl-----~lD~w~~~~l~~m 92 (138)
T 2owa_A 36 NRTCFDCESR--NPTWLSLS-FAVFICLNCSSDHRKMGVHIS---FVR--SS-----DLDKFTPIQLVRM 92 (138)
T ss_dssp GGBCTTTCCB--SCCEEETT-TTEEECHHHHHHHHTTCTTTC---CEE--ET-----TTSCCCHHHHHHH
T ss_pred CCcCCCCcCC--CCCeEEec-CCEEEhHhhhHHHhCCCCCCC---eee--ec-----CcCcCCHHHHHHH
Confidence 4679889865 34455554 57889999976543 566543 333 21 1236999876544
No 106
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=24.04 E-value=1.1e+02 Score=24.83 Aligned_cols=48 Identities=15% Similarity=0.115 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhCCCceeeHHHHhhhccchHHHHHHHHHhhhhhcccccccC
Q 008612 58 YRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGAV 108 (559)
Q Consensus 58 ~RN~ii~~yr~np~~~lt~t~~r~~l~gD~~~i~rvh~FLe~wGlIN~~~~ 108 (559)
.|-.|+...... .+|+++..+.+.-.-..+.|...-|+..|||....+
T Consensus 22 ~r~~IL~~L~~~---~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~~ 69 (114)
T 2oqg_A 22 TRWEILTELGRA---DQSASSLATRLPVSRQAIAKHLNALQACGLVESVKV 69 (114)
T ss_dssp HHHHHHHHHHHS---CBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHcC---CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEec
Confidence 566777766333 389999999997789999999999999999986544
No 107
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=23.98 E-value=1e+02 Score=25.64 Aligned_cols=42 Identities=2% Similarity=0.038 Sum_probs=33.5
Q ss_pred HHHHhCCCceeeHHHHhhhccch----HHHHHHHHHhhhhhcccccccC
Q 008612 64 NKYREEPSRRLTFTQVRKSLVGD----VSLLHKVFRLLDEWGLINFGAV 108 (559)
Q Consensus 64 ~~yr~np~~~lt~t~~r~~l~gD----~~~i~rvh~FLe~wGlIN~~~~ 108 (559)
-.|... .+|+.+..+.|..| ...+.|+...|+.-|||--..+
T Consensus 43 ~L~~~~---~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~~ 88 (99)
T 2k4b_A 43 VIWSLG---EARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEKE 88 (99)
T ss_dssp HHHHHS---CEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEEE
T ss_pred HHHhCC---CCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEeC
Confidence 346543 58999999998754 7899999999999999976543
No 108
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=23.69 E-value=1.1e+02 Score=24.41 Aligned_cols=47 Identities=17% Similarity=0.241 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhCCCceeeHHHHhhhccc-hHHHHHHHHHhhhhhcccc
Q 008612 57 EYRDFMINKYREEPSRRLTFTQVRKSLVG-DVSLLHKVFRLLDEWGLIN 104 (559)
Q Consensus 57 ~~RN~ii~~yr~np~~~lt~t~~r~~l~g-D~~~i~rvh~FLe~wGlIN 104 (559)
-.++| |+.|...|...+++.++...|.. ..-=|.-|..-||..|||-
T Consensus 15 lt~kF-i~l~~~~~~~~i~l~~aa~~L~v~~kRRiYDI~NVLe~igli~ 62 (76)
T 1cf7_A 15 LTTKF-VSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIE 62 (76)
T ss_dssp HHHHH-HHHHHHSSTTEEEHHHHHHHTTTCCTHHHHHHHHHHHHHTSEE
T ss_pred HHHHH-HHHHHhCCCCcCcHHHHHHHhCCccceehhhHHHHHhHhccee
Confidence 34444 56788899999999999999987 6666677777899999996
No 109
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=23.36 E-value=1.2e+02 Score=25.63 Aligned_cols=54 Identities=13% Similarity=0.099 Sum_probs=41.3
Q ss_pred ChhhHHHHHHHHHHHHHhCCCceeeHHHHhhhccchHHHHHHHHHhhhhhccccccc
Q 008612 51 TPKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGA 107 (559)
Q Consensus 51 tp~~Y~~~RN~ii~~yr~np~~~lt~t~~r~~l~gD~~~i~rvh~FLe~wGlIN~~~ 107 (559)
|+..|..++ .|+.... ....+|+++..+.+.-+..++.|+..-|+..|||....
T Consensus 12 t~~~~~~L~-~l~~l~~--~~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~r~~ 65 (139)
T 2x4h_A 12 SRREFSYLL-TIKRYND--SGEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKKKE 65 (139)
T ss_dssp CHHHHHHHH-HHHHHHT--TTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CHHHHHHHH-HHHHHHh--cCCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEEecC
Confidence 566665555 3444333 34679999999999889999999999999999998643
No 110
>2kj8_A Putative prophage CPS-53 integrase; INTS, INTC, YFDB, DNA integration, DNA recombination, structural genomics, protein structure initiative; NMR {Escherichia coli k-12}
Probab=23.32 E-value=75 Score=25.95 Aligned_cols=55 Identities=15% Similarity=0.070 Sum_probs=34.8
Q ss_pred ChhhHHHH----HHHHHHHHHhCCCceeeHHHHhhhcc-----ch-------HHHHHHHHHhhhhhccccc
Q 008612 51 TPKIYKEY----RDFMINKYREEPSRRLTFTQVRKSLV-----GD-------VSLLHKVFRLLDEWGLINF 105 (559)
Q Consensus 51 tp~~Y~~~----RN~ii~~yr~np~~~lt~t~~r~~l~-----gD-------~~~i~rvh~FLe~wGlIN~ 105 (559)
.+..+..| +++|+..+-.-|-..||..+++..+. |- ...+..|+.|.-.||+|..
T Consensus 23 ~~~T~~~y~~~l~~~i~~~lg~~~l~~It~~~i~~~~~~l~~~~s~~t~~~~~~~l~~~~~~Av~~~~i~~ 93 (118)
T 2kj8_A 23 SVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKY 93 (118)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSBTTSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTTSCSC
T ss_pred CHHHHHHHHHHHHHHhhHHhcCCcHHHCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 44444444 44555555556778899888876552 21 3456677788888898864
No 111
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=23.19 E-value=4.7e+02 Score=24.59 Aligned_cols=82 Identities=13% Similarity=0.095 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH----HH-HHHHHHHHHHHH
Q 008612 467 LRIRTATATALGAAAANAKLLADQEDREIEHLVAIIIETQMKKLHSKINYFDDLELIMEKE----YN-EMMQLKECLVEE 541 (559)
Q Consensus 467 ~~v~~Aaa~AL~aAA~kAk~LA~~EEreI~~Lv~~lIe~QlkKLElKLk~feeLE~~~e~E----r~-~LE~~rq~L~~e 541 (559)
.+++...+--+.-|-.||..+-..-+.|-+.....+|+.+-+|++.- |+.-++..+.. +- .+-+.|..++..
T Consensus 15 ~~i~~m~~fI~qEA~eKA~EI~~kAeeE~~~ek~~~v~~~~~~i~~~---~ek~~kq~e~~~~i~~S~~~~~aR~~vL~a 91 (233)
T 4efa_E 15 DELNKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGN---FKSKLKKAMLSQQITKSTIANKMRLKVLSA 91 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777788888888888888887777777777778887776665432 22222222222 21 222455566666
Q ss_pred HHHHHHHHHh
Q 008612 542 RIDVLERALK 551 (559)
Q Consensus 542 R~~~~~~~~~ 551 (559)
|..++...+.
T Consensus 92 r~e~i~~v~~ 101 (233)
T 4efa_E 92 REQSLDGIFE 101 (233)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6555555443
No 112
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=22.82 E-value=60 Score=27.12 Aligned_cols=54 Identities=15% Similarity=0.242 Sum_probs=43.6
Q ss_pred hhhHHHH--HHHHHHHHHhCCCcee-eHHHHhhhccchHHHHHHHHHhhhhhccccccc
Q 008612 52 PKIYKEY--RDFMINKYREEPSRRL-TFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGA 107 (559)
Q Consensus 52 p~~Y~~~--RN~ii~~yr~np~~~l-t~t~~r~~l~gD~~~i~rvh~FLe~wGlIN~~~ 107 (559)
..+|..+ |+.|+..| .|...| +..+..+.+.--...+.+...-|+.-|||-...
T Consensus 21 ~~~y~~l~i~~~I~~~l--~~g~~lps~~eLa~~lgVSr~tVr~al~~L~~~GlI~~~~ 77 (102)
T 2b0l_A 21 SLSYSELEAIEHIFEEL--DGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRS 77 (102)
T ss_dssp TSCHHHHHHHHHHTTSS--BTTEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHHHhhh--cCCCcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 3578888 99999443 567777 999988888666789999999999999997654
No 113
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=22.76 E-value=44 Score=30.30 Aligned_cols=58 Identities=17% Similarity=0.295 Sum_probs=34.5
Q ss_pred CCccCCCCCCCCCCceeEeccCCCcccchhhhhcCC-CCCCCCCCCceeccCCCCCCCCCCCCCHHHHHHH
Q 008612 194 KGFKCGSCGEQCNSGCYEYSKQGSFVICEKCFKNGN-YGEDKSKDDFRFSDLGGNSLTHGATWTEAETLLL 263 (559)
Q Consensus 194 ~~~~C~~Cg~~~~~~~y~~~k~~~~~lC~~Cf~~G~-~~~~~ss~df~~~~~~~~~~~~~~~WT~~E~~~L 263 (559)
.-..|.-||.. .+.+-+.. -++.+|.+|-.--+ +|.|.+ |++- . ..+..||.+|...|
T Consensus 36 ~N~~CaDCga~--~P~WaS~n-~GvfiC~~CsgiHR~LG~hIS---~VrS--l----~LD~~W~~~~l~~m 94 (144)
T 2p57_A 36 TNKACFDCGAK--NPSWASIT-YGVFLCIDCSGVHRSLGVHLS---FIRS--T----ELDSNWNWFQLRCM 94 (144)
T ss_dssp GGGBCTTTCCB--SCCEEEGG-GTEEECHHHHHHHHHHCTTTC---CEEE--S----SSCCCCCHHHHHHH
T ss_pred CCCcCCCCcCC--CCCeEEec-cCEEEhhhchHHHcCCCCCCC---eeee--c----ccCCCCCHHHHHHH
Confidence 34679989865 34455554 57889999976443 555432 2321 1 12335998776554
No 114
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=22.42 E-value=1e+02 Score=27.63 Aligned_cols=56 Identities=20% Similarity=0.224 Sum_probs=34.5
Q ss_pred CccCCCCCCCCCCceeEeccCCCcccchhhhhcCC-CCCCCCCCCceeccCCCCCCCCCCCCCHHHHHHHH
Q 008612 195 GFKCGSCGEQCNSGCYEYSKQGSFVICEKCFKNGN-YGEDKSKDDFRFSDLGGNSLTHGATWTEAETLLLL 264 (559)
Q Consensus 195 ~~~C~~Cg~~~~~~~y~~~k~~~~~lC~~Cf~~G~-~~~~~ss~df~~~~~~~~~~~~~~~WT~~E~~~LL 264 (559)
-..|.-||.. ...+-+.. -++.+|.+|-.--+ +|.+ .+++- . .-..||.++...|.
T Consensus 25 N~~CaDCg~~--~P~WaS~n-~GvfiC~~CsgiHR~LG~~----s~VrS--l-----~ld~w~~~~l~~m~ 81 (140)
T 2olm_A 25 NRKCFDCDQR--GPTYVNMT-VGSFVCTSCSGSLRGLNPP----HRVKS--I-----SMTTFTQQEIEFLQ 81 (140)
T ss_dssp GGSCTTTCSS--CCCEEETT-TTEEECHHHHHHHTTSSSC----CCEEE--T-----TTCCCCHHHHHHHH
T ss_pred CCcCCCCCCC--CCCceeec-cCEEEchhccchhccCCCc----ceeee--c-----CCCCCCHHHHHHHH
Confidence 4679889865 44455554 57889999976543 4542 34432 1 12469998775554
No 115
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=22.21 E-value=51 Score=30.49 Aligned_cols=56 Identities=16% Similarity=0.218 Sum_probs=34.5
Q ss_pred CccCCCCCCCCCCceeEeccCCCcccchhhhhcCC-CCCCCCCCCceeccCCCCCCCCCCCCCHHHHHHH
Q 008612 195 GFKCGSCGEQCNSGCYEYSKQGSFVICEKCFKNGN-YGEDKSKDDFRFSDLGGNSLTHGATWTEAETLLL 263 (559)
Q Consensus 195 ~~~C~~Cg~~~~~~~y~~~k~~~~~lC~~Cf~~G~-~~~~~ss~df~~~~~~~~~~~~~~~WT~~E~~~L 263 (559)
-..|.-|+.. .+.+-+.. -++.+|.+|-.--+ ++.|.+ +++ .. .-..||.++...|
T Consensus 22 N~~CaDCga~--~P~WaS~n-lGvflCi~CSGiHR~LG~hIS---kVK--Sl-----tLD~Wt~e~l~~m 78 (163)
T 3sub_A 22 NNKCFDCGIS--NPDWVSVN-HGIFLCINCSGVHRSLGVHIS---IVR--SI-----KMDIFTDEQLKYI 78 (163)
T ss_dssp GGBCTTTCCB--SCCEEETT-TTEEECHHHHHHHHHTCTTTC---CEE--ET-----TTCCCCHHHHHHH
T ss_pred CCccccCCCC--CCCeEEec-CCeeEHHhhhHHhcCCCCCCC---eee--ec-----cccCcCHHHHHHH
Confidence 4679999875 34444444 68899999975543 555542 222 21 1246999876544
No 116
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=22.12 E-value=82 Score=27.00 Aligned_cols=54 Identities=15% Similarity=0.176 Sum_probs=41.3
Q ss_pred hhhHHHHHHHHHHHHHhCCCcee-eHHHHhhhccchHHHHHHHHHhhhhhcccccc
Q 008612 52 PKIYKEYRDFMINKYREEPSRRL-TFTQVRKSLVGDVSLLHKVFRLLDEWGLINFG 106 (559)
Q Consensus 52 p~~Y~~~RN~ii~~yr~np~~~l-t~t~~r~~l~gD~~~i~rvh~FLe~wGlIN~~ 106 (559)
-.+|-.||+.|++ -...|...| |..+..+.+.--...+.+.+.-|+.-|+|--.
T Consensus 16 ~~i~~~i~~~I~~-g~~~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~ 70 (125)
T 3neu_A 16 SQISDWMKKQMIT-GEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAK 70 (125)
T ss_dssp HHHHHHHHHHHHT-TSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHh-CCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEe
Confidence 3566666666665 234688889 58888888866689999999999999999643
No 117
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=21.78 E-value=3.4e+02 Score=22.33 Aligned_cols=53 Identities=11% Similarity=0.220 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 008612 480 AAANAKLLADQEDREIEHLVAIIIETQMKKLHSKINYFDDLELIMEKEYNEMMQLKE 536 (559)
Q Consensus 480 AA~kAk~LA~~EEreI~~Lv~~lIe~QlkKLElKLk~feeLE~~~e~Er~~LE~~rq 536 (559)
+|.-..-+-.+|-.++..|=..| +..|+--.+.+++||..+++-+..|....+
T Consensus 27 aA~Ee~YfrqkekEqL~~LKkkl----~~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 27 QAEEERYFRARAKEQLAALKKHK----ENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34344444444555555543333 455666677777788777777766665543
No 118
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=21.77 E-value=89 Score=26.24 Aligned_cols=35 Identities=17% Similarity=0.186 Sum_probs=32.1
Q ss_pred hCCCceeeHHHHhh-hccchHHHHHHHHHhhhhhcccc
Q 008612 68 EEPSRRLTFTQVRK-SLVGDVSLLHKVFRLLDEWGLIN 104 (559)
Q Consensus 68 ~np~~~lt~t~~r~-~l~gD~~~i~rvh~FLe~wGlIN 104 (559)
.+| +.|.++... .+.-|-..+.|=...|++-|||=
T Consensus 27 ~~~--~~t~~~Lae~~l~~drstvsrnl~~L~r~GlVe 62 (95)
T 1bja_A 27 KKD--FITAAEVREVHPDLGNAVVNSNIGVLIKKGLVE 62 (95)
T ss_dssp HST--TBCHHHHHHTCTTSCHHHHHHHHHHHHTTTSEE
T ss_pred HCC--CCCHHHHHHHHhcccHHHHHHHHHHHHHCCCee
Confidence 366 999999999 88889999999999999999997
No 119
>2kj5_A Phage integrase; GFT PSI-2, NESG, structural genomics, structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=21.75 E-value=56 Score=26.35 Aligned_cols=22 Identities=14% Similarity=0.364 Sum_probs=16.7
Q ss_pred HHHHHHHHHhhhhhcccccccC
Q 008612 87 VSLLHKVFRLLDEWGLINFGAV 108 (559)
Q Consensus 87 ~~~i~rvh~FLe~wGlIN~~~~ 108 (559)
...+..++.|.-.||+|...+.
T Consensus 76 ~~~l~~~~~~A~~~~~i~~NP~ 97 (116)
T 2kj5_A 76 LRWLKRMFNYAIKRHIIEYNPA 97 (116)
T ss_dssp HHHHHHHHHHHHHTTSCSSCGG
T ss_pred HHHHHHHHHHHHHcCccccCch
Confidence 4567788889999999975443
No 120
>1rji_A BMKX, potassium channel toxin KX; 3-10 helix, beta sheet; NMR {Synthetic} SCOP: g.3.7.2 PDB: 1wt8_A
Probab=21.73 E-value=25 Score=23.11 Aligned_cols=17 Identities=18% Similarity=0.323 Sum_probs=11.7
Q ss_pred eccCCCcccchhhhhcC
Q 008612 212 YSKQGSFVICEKCFKNG 228 (559)
Q Consensus 212 ~~k~~~~~lC~~Cf~~G 228 (559)
|..|.--++|.+||..|
T Consensus 13 cvmcglgi~ck~~y~q~ 29 (31)
T 1rji_A 13 CVMCGLGISCKNGYCQG 29 (31)
T ss_dssp GTTTCSSCCBCSSBBSC
T ss_pred EEEeccceEEcceeecc
Confidence 55555567788888766
No 121
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=21.69 E-value=4.3e+02 Score=28.06 Aligned_cols=27 Identities=19% Similarity=0.225 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008612 519 DLELIMEKEYNEMMQLKECLVEERIDV 545 (559)
Q Consensus 519 eLE~~~e~Er~~LE~~rq~L~~eR~~~ 545 (559)
+||..++..++.+++.+|++-.-|..+
T Consensus 548 ~le~~~~~~~~~~~~l~~e~~~~~~~~ 574 (597)
T 3oja_B 548 ALEKQLDNKRAKQAELRQETSLKRQKV 574 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 444555555555555555444444333
No 122
>3htu_B Vacuolar protein-sorting-associated protein 20; ESCRT-II, ESCRT-III, VPS20, VPS25, MVB, cytoplasm, nucleus, polymorphism, protein transport; 2.00A {Homo sapiens}
Probab=21.53 E-value=74 Score=22.51 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhhHH-HHHHHHHHHHH
Q 008612 505 TQMKKLHSKINYFD-DLELIMEKEYN 529 (559)
Q Consensus 505 ~QlkKLElKLk~fe-eLE~~~e~Er~ 529 (559)
.|||.=--||+++. .+|.++++|++
T Consensus 12 L~LK~QRDkL~qyqkri~~~~~rE~e 37 (39)
T 3htu_B 12 LQLKQQRDKLRQYQKRIAQQLERERA 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 46777778888888 89999999876
No 123
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=21.37 E-value=93 Score=26.80 Aligned_cols=41 Identities=15% Similarity=0.071 Sum_probs=34.8
Q ss_pred CCCceeeHHHHhhhccchHHHHHHHHHhhhhhcccccccCC
Q 008612 69 EPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGAVS 109 (559)
Q Consensus 69 np~~~lt~t~~r~~l~gD~~~i~rvh~FLe~wGlIN~~~~~ 109 (559)
.+..++|..+..+.+.-+...+.|+...|+.-|||-...++
T Consensus 47 ~~~~~ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~~ 87 (128)
T 2vn2_A 47 EGVLFPTPAELAERMTVSAAECMEMVRRLLQKGMIAIEEHT 87 (128)
T ss_dssp TTCSSCCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC--
T ss_pred cCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEE
Confidence 35566899999999988999999999999999999877665
No 124
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=21.34 E-value=1.3e+02 Score=23.65 Aligned_cols=52 Identities=13% Similarity=0.139 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHhCC-CceeeHHHHhhhccchHHHHHHHHHhhhhhcccccc
Q 008612 55 YKEYRDFMINKYREEP-SRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFG 106 (559)
Q Consensus 55 Y~~~RN~ii~~yr~np-~~~lt~t~~r~~l~gD~~~i~rvh~FLe~wGlIN~~ 106 (559)
.-+....|+...+.|+ ..++|+.+..+.|.-+...|.|...=|++-|+|-..
T Consensus 12 ~~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~ 64 (77)
T 1qgp_A 12 YQDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKE 64 (77)
T ss_dssp HHHHHHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CHHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEec
Confidence 3445677888888887 779999999999988889999999999999999654
No 125
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=21.03 E-value=2.6e+02 Score=20.74 Aligned_cols=27 Identities=33% Similarity=0.505 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008612 524 MEKEYNEMMQLKECLVEERIDVLERALK 551 (559)
Q Consensus 524 ~e~Er~~LE~~rq~L~~eR~~~~~~~~~ 551 (559)
...| ++--..|++||.||++-++.-+.
T Consensus 16 ~~LE-kqF~~LkEqlY~ERl~ql~~~Le 42 (49)
T 2xus_A 16 LDLE-KQFSELKEKLFRERLSQLRLRLE 42 (49)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344 34456799999999998887654
No 126
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=20.85 E-value=1.5e+02 Score=23.28 Aligned_cols=49 Identities=12% Similarity=0.024 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhCCCceeeHHHHhhhccchHHHHHHHHHhhhhhcccccccC
Q 008612 58 YRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGAV 108 (559)
Q Consensus 58 ~RN~ii~~yr~np~~~lt~t~~r~~l~gD~~~i~rvh~FLe~wGlIN~~~~ 108 (559)
.|-.|+..... ...+|+++..+.+.-+...+.|...-|+..|+|....+
T Consensus 25 ~~~~il~~l~~--~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~~ 73 (99)
T 3cuo_A 25 KRLLILCMLSG--SPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRD 73 (99)
T ss_dssp HHHHHHHHHTT--CCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHh--CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEec
Confidence 45567765443 34689999999997789999999999999999987654
Done!