BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008613
(559 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 70/141 (49%), Gaps = 8/141 (5%)
Query: 57 RARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKK--------NLQGIHSSE 108
+AR D + AA K GN L+ E + A+Q+Y +A L G +
Sbjct: 165 KARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDM 224
Query: 109 GRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAV 168
+ C LN +C +K K+YDE I + VL + KN KAL+RRG+A ++G+++ A
Sbjct: 225 ALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSAR 284
Query: 169 SDLSNAHEVSPDDGTIADVLR 189
D A + +PDD I LR
Sbjct: 285 DDFRKAQKYAPDDKAIRRELR 305
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 66/122 (54%), Gaps = 6/122 (4%)
Query: 69 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK 128
++ + L+K+GNEL+ G + AL Y A G+ ++ +L N +C+LK +
Sbjct: 26 SSVEQLRKEGNELFKCGDYGGALAAYTQA----LGLDATPQDQAVL--HRNRAACHLKLE 79
Query: 129 QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVL 188
YD+ S+ + D +VKALYRR QA + +GRL++AV DL + P + + L
Sbjct: 80 DYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEAL 139
Query: 189 RD 190
R+
Sbjct: 140 RN 141
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 8/134 (5%)
Query: 74 LKKQGNELYSEGRFSNALQKYLLAKKNLQG----IHSSEGRTL---LLACSLNSMSCYLK 126
LK GN + + A++KY + ++G ++G L L+C LN +C LK
Sbjct: 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLK 285
Query: 127 TKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI-A 185
+ + E L D N KALYRR Q ++ + ++A++DL A E++P+D I A
Sbjct: 286 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQA 345
Query: 186 DVLRDAKEILMKED 199
++L+ ++I ++D
Sbjct: 346 ELLKVKQKIKAQKD 359
>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
pdb|2FBN|B Chain B, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
Length = 198
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 63/120 (52%), Gaps = 11/120 (9%)
Query: 74 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEG---------RTLLLACSLNSMSCY 124
+K++GNE + + + A+ KY A IH+ E + + ++C+LN +CY
Sbjct: 41 IKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQILLDKKKNIEISCNLNLATCY 98
Query: 125 LKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI 184
K K Y + I S+VL D NVKALY+ G A G LEEA +L A ++P++ I
Sbjct: 99 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDI 158
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 6/117 (5%)
Query: 71 AKMLKKQGNELYSEGRFSNALQKY------LLAKKNLQGIHSSEGRTLLLACSLNSMSCY 124
A ++K++G + G++ A+ +Y L + L S + LLA LN CY
Sbjct: 268 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 327
Query: 125 LKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
LK ++Y + ++ + L D+ N K LYRRG+A + E A D EV+P +
Sbjct: 328 LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN 384
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 6/117 (5%)
Query: 71 AKMLKKQGNELYSEGRFSNALQKY------LLAKKNLQGIHSSEGRTLLLACSLNSMSCY 124
A ++K++G + G++ A+ +Y L + L S + LLA LN CY
Sbjct: 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 327
Query: 125 LKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
LK ++Y + ++ + L D+ N K LYRRG+A + E A D EV+P +
Sbjct: 328 LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN 384
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 67/133 (50%), Gaps = 8/133 (6%)
Query: 57 RARIDAQMNYE--FNAAKMLKKQGNELYSEGRFSNALQKY------LLAKKNLQGIHSSE 108
+A+ +MN E + ++K++G + EG++ AL +Y L + + + +
Sbjct: 131 KAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQK 190
Query: 109 GRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAV 168
+ L LA LN C+LK + + I+ ++ L D+ N K L+RRG+A+ + E A
Sbjct: 191 AQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELAR 250
Query: 169 SDLSNAHEVSPDD 181
+D ++ P++
Sbjct: 251 ADFQKVLQLYPNN 263
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 9/125 (7%)
Query: 69 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK 128
N+A+ K GN Y +G + A++ Y +K L+ ++ + N + Y K
Sbjct: 7 NSAEAWKNLGNAYYKQGDYQKAIEYY---QKALELDPNNA------SAWYNLGNAYYKQG 57
Query: 129 QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVL 188
Y + I+ + L D N KA YRRG AY G ++A+ D A E+ P++ L
Sbjct: 58 DYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNL 117
Query: 189 RDAKE 193
+AK+
Sbjct: 118 GNAKQ 122
>pdb|4AIF|A Chain A, Aip Tpr Domain In Complex With Human Hsp90 Peptide
pdb|4AIF|B Chain B, Aip Tpr Domain In Complex With Human Hsp90 Peptide
Length = 144
Score = 49.7 bits (117), Expect = 4e-06, Method: Composition-based stats.
Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 15/122 (12%)
Query: 70 AAKMLKKQGNELYSEGRFSNALQKY---LLAKKNLQ---------GIHSSEGRTLLLACS 117
A ++ ++GN LY EG A KY + KNLQ I + T LL
Sbjct: 7 AVPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQITPLL--- 63
Query: 118 LNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV 177
LN C L ++Y E + S +L NVKA ++RG+A+ + +EA +D + E+
Sbjct: 64 LNYCQCKLVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLEL 123
Query: 178 SP 179
P
Sbjct: 124 DP 125
>pdb|4APO|A Chain A, Aip Tpr Domain In Complex With Human Tomm20 Peptide
pdb|4APO|B Chain B, Aip Tpr Domain In Complex With Human Tomm20 Peptide
Length = 165
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 15/122 (12%)
Query: 70 AAKMLKKQGNELYSEGRFSNALQKY---LLAKKNLQ---------GIHSSEGRTLLLACS 117
A ++ ++GN LY EG A KY + KNLQ I + T LL
Sbjct: 13 AVPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQITPLL--- 69
Query: 118 LNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV 177
LN C L ++Y E + S +L NVKA ++RG+A+ + +EA +D + E+
Sbjct: 70 LNYCQCKLVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLEL 129
Query: 178 SP 179
P
Sbjct: 130 DP 131
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 58/115 (50%), Gaps = 6/115 (5%)
Query: 73 MLKKQGNELYSEGRFSNALQKY------LLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK 126
++K++G + EG++ AL +Y L + + + + + L LA LN C+LK
Sbjct: 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLK 208
Query: 127 TKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
+ + I+ ++ L D+ N K L RRG+A+ + E A +D ++ P++
Sbjct: 209 LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN 263
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Query: 78 GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVG 137
EL +GR+++A KY K I R+ C C+ K ++ E I+V
Sbjct: 264 AEELIRDGRYTDATSKYESVXKTEPSIAEYTVRSKERICH-----CFSKDEKPVEAIRVC 318
Query: 138 SEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 195
SEVL + NV AL R +AY +EA+ D A E + +D I + L A+ +L
Sbjct: 319 SEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQDYETAQEHNENDQQIREGLEKAQRLL 376
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Query: 78 GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVG 137
EL +GR+++A KY K I R+ C C+ K ++ E I+V
Sbjct: 264 AEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICH-----CFSKDEKPVEAIRVC 318
Query: 138 SEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 195
SEVL + NV AL R +AY +EA+ D A E + +D I + L A+ +L
Sbjct: 319 SEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLL 376
>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
pdb|3IEG|B Chain B, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
Length = 359
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Query: 78 GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVG 137
EL +GR+++A KY K + R+ C C+ K ++ E I++
Sbjct: 241 AEELIRDGRYTDATSKYESVXKTEPSVAEYTVRSKERICH-----CFSKDEKPVEAIRIC 295
Query: 138 SEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 195
SEVL + NV AL R +AY +EA+ D A E + +D I + L A+ +L
Sbjct: 296 SEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 11/126 (8%)
Query: 69 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQ-GIHSSEGRTLLLACSLNSMSCYLKT 127
N+A+ GN Y +G + A++ Y +K L+ +++E N + Y K
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYY---QKALELDPNNAEAW-------YNLGNAYYKQ 56
Query: 128 KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADV 187
YDE I+ + L D N +A Y G AY G +EA+ A E+ P++
Sbjct: 57 GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQN 116
Query: 188 LRDAKE 193
L +AK+
Sbjct: 117 LGNAKQ 122
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 9/125 (7%)
Query: 69 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK 128
N+A+ GN Y +G + A++ Y +K L+ ++ + N + Y K
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYY---QKALE-LYPNNAEAWY-----NLGNAYYKQG 57
Query: 129 QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVL 188
YDE I+ + L N +A Y G AY G +EA+ A E+ P++ L
Sbjct: 58 DYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNL 117
Query: 189 RDAKE 193
+AK+
Sbjct: 118 GNAKQ 122
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 35/75 (46%)
Query: 119 NSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS 178
N + Y K YDE I+ + L D N +A Y G AY G +EA+ A E+
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73
Query: 179 PDDGTIADVLRDAKE 193
P++ L +AK+
Sbjct: 74 PNNAEAKQNLGNAKQ 88
>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative
Peptidylprolyl Isomerase, From Caenorhabditis Elegans
Length = 162
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 13/115 (11%)
Query: 68 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEG-----------RTLLLAC 116
+ + L+++GNEL+ + + A+ Y A L + E + + L
Sbjct: 8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYA 67
Query: 117 SLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDL 171
+++ CYL E + SEVL + N KAL+RR +A +L+EA DL
Sbjct: 68 NMSQ--CYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDL 120
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 11/103 (10%)
Query: 78 GNELYSEGRFSNALQKYLLAKKNLQ-GIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKV 136
GN Y +G + A++ Y +K L+ S+E N + Y K YDE I+
Sbjct: 8 GNAYYKQGDYDEAIEYY---QKALELDPRSAEAW-------YNLGNAYYKQGDYDEAIEY 57
Query: 137 GSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP 179
+ L D ++ +A Y G AY G +EA+ A E+ P
Sbjct: 58 YQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 100
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 11/103 (10%)
Query: 78 GNELYSEGRFSNALQKYLLAKKNLQ-GIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKV 136
GN Y +G + A++ Y +K L+ S+E N + Y K YDE I+
Sbjct: 42 GNAYYKQGDYDEAIEYY---QKALELDPRSAEAW-------YNLGNAYYKQGDYDEAIEY 91
Query: 137 GSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP 179
+ L D ++ +A Y G AY G +EA+ A E+ P
Sbjct: 92 YQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
Score = 36.6 bits (83), Expect = 0.035, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 29/61 (47%)
Query: 119 NSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS 178
N + Y K YDE I+ + L D ++ +A Y G AY G +EA+ A E+
Sbjct: 6 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 65
Query: 179 P 179
P
Sbjct: 66 P 66
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 9/102 (8%)
Query: 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY 130
A LK +GN ++ F+ A++ Y A I + + N +CY+ T
Sbjct: 25 AVQLKNRGNHFFTAKNFNEAIKYYQYA------IELDPNEPVFYS---NISACYISTGDL 75
Query: 131 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLS 172
++ I+ ++ L + KAL RR A + +G +A+ DLS
Sbjct: 76 EKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS 117
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 38.5 bits (88), Expect = 0.009, Method: Composition-based stats.
Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 9/111 (8%)
Query: 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY 130
A+ LK Q N+ + + NA++ Y Q I + + N YL+T+ Y
Sbjct: 21 AEELKTQANDYFKAKDYENAIKFYS------QAIELNPSNAIYYG---NRSLAYLRTECY 71
Query: 131 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
+ + + D K +K YRR + +G+ A+ D +V P D
Sbjct: 72 GYALNDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD 122
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 9/102 (8%)
Query: 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY 130
A LK +GN ++ F+ A++ Y A I + + N +CY+ T
Sbjct: 21 AVQLKNRGNHFFTAKNFNEAIKYYQYA------IELDPNEPVFYS---NISACYISTGDL 71
Query: 131 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLS 172
++ I+ ++ L + KAL RR A + +G +A+ DLS
Sbjct: 72 EKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS 113
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 9/111 (8%)
Query: 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY 130
A+ LK Q N+ + + NA++ Y Q I + + N YL+T+ Y
Sbjct: 6 AEELKTQANDYFKAKDYENAIKFYS------QAIELNPSNAIYYG---NRSLAYLRTECY 56
Query: 131 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
+ + + D K +K YRR + +G+ A+ D +V P D
Sbjct: 57 GYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD 107
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 38.1 bits (87), Expect = 0.013, Method: Composition-based stats.
Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 9/111 (8%)
Query: 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY 130
A+ LK Q N+ + + NA++ Y Q I + + N YL+T+ Y
Sbjct: 13 AEELKTQANDYFKAKDYENAIKFYS------QAIELNPSNAIYYG---NRSLAYLRTECY 63
Query: 131 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
+ + + D K +K YRR + +G+ A+ D +V P D
Sbjct: 64 GYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD 114
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 54/111 (48%), Gaps = 13/111 (11%)
Query: 70 AAKMLKKQGNELYSEGRFSNALQKY--LLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT 127
+A+ LK+QGN L+ ++ A Y + + L ++ + N CYLK
Sbjct: 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYT-----------NRALCYLKM 51
Query: 128 KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS 178
+Q ++ + L D ++VKA + GQ ++ +EA+++L A+ ++
Sbjct: 52 QQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLA 102
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Phosphorylated Smad1 Peptide
Length = 137
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 61/131 (46%), Gaps = 18/131 (13%)
Query: 70 AAKMLKKQGNELYSEGRFSNALQKY--LLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT 127
+A+ LK+QGN L+ ++ A Y + + L ++ + N CYLK
Sbjct: 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYT-----------NRALCYLKM 56
Query: 128 KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD-----G 182
+Q ++ + L D ++VKA + GQ ++ +EA+++L A+ ++ +
Sbjct: 57 QQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGD 116
Query: 183 TIADVLRDAKE 193
I LR AK+
Sbjct: 117 DIPSALRIAKK 127
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 36.6 bits (83), Expect = 0.038, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 29/61 (47%)
Query: 119 NSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS 178
N + Y K YDE I+ + L D ++ +A Y G AY G +EA+ A E+
Sbjct: 8 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 67
Query: 179 P 179
P
Sbjct: 68 P 68
>pdb|3ASG|A Chain A, Mama D159k Mutant 2
pdb|3ASG|B Chain B, Mama D159k Mutant 2
pdb|3ASH|A Chain A, Mama D159k Mutant 1
pdb|3ASH|B Chain B, Mama D159k Mutant 1
Length = 186
Score = 35.0 bits (79), Expect = 0.10, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 33/61 (54%)
Query: 124 YLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT 183
Y++ ++YD + + +V + N +R G A K++GR +EA+ A + P++G
Sbjct: 86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALKNLGRFDEAIDSFKIALGLRPNEGK 145
Query: 184 I 184
+
Sbjct: 146 V 146
>pdb|1QZ9|A Chain A, The Three Dimensional Structure Of Kynureninase From
Pseudomonas Fluorescens
Length = 416
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%)
Query: 24 KCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYS 83
+CAA +LT P E A+ G ++ PE A ++A ID + ++ ++++ LY+
Sbjct: 324 RCAAHELTLVTPREHAKRGSHVSFEHPEGYAVIQALIDRGVIGDYREPRIMRFGFTPLYT 383
>pdb|3AS8|A Chain A, Mama Msr-1 P41212
pdb|3ASF|A Chain A, Mama Msr-1 C2
pdb|3ASF|B Chain B, Mama Msr-1 C2
Length = 186
Score = 33.5 bits (75), Expect = 0.35, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 32/61 (52%)
Query: 124 YLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT 183
Y++ ++YD + + +V + N +R G A ++GR +EA+ A + P++G
Sbjct: 86 YVQVQKYDLAVPLLVKVAEANPVNFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGK 145
Query: 184 I 184
+
Sbjct: 146 V 146
>pdb|3AS4|A Chain A, Mama Amb-1 C2221
pdb|3AS5|A Chain A, Mama Amb-1 P212121
pdb|3AS5|B Chain B, Mama Amb-1 P212121
Length = 186
Score = 33.1 bits (74), Expect = 0.45, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 32/61 (52%)
Query: 124 YLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT 183
Y++ ++YD + + +V + N +R G A ++GR +EA+ A + P++G
Sbjct: 86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGK 145
Query: 184 I 184
+
Sbjct: 146 V 146
>pdb|3ASD|A Chain A, Mama R50e Mutant
Length = 200
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 32/62 (51%)
Query: 123 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG 182
Y++ ++YD + + +V + N +R G A ++GR +EA+ A + P++G
Sbjct: 85 TYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEG 144
Query: 183 TI 184
+
Sbjct: 145 KV 146
>pdb|3RGW|L Chain L, Crystal Structure At 1.5 A Resolution Of An H2-Reduced,
O2-Tolerant Hydrogenase From Ralstonia Eutropha Unmasks
A Novel Iron-Sulfur Cluster
Length = 603
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 46/119 (38%), Gaps = 27/119 (22%)
Query: 261 LKDDPESIRSFQNFISNANPDSFAALSGG---------KAGEISPDMFKAVSIMINKMSP 311
LK DP+ Q +S A+P S A ++G++ P M + P
Sbjct: 137 LKADPKRTSELQQLVSPAHPLSSAGYFRDIQNRLKRFVESGQLGPFMNGYWGSKAYVLPP 196
Query: 312 E-------------ELQR-MIQIASSFQGENPHAN----GDSIETNFNGFRPGSTPPNM 352
E +LQ+ ++I + F G+NPH N G N +G S P NM
Sbjct: 197 EANLMAVTHYLEALDLQKEWVKIHTIFGGKNPHPNYLVGGVPCAINLDGIGAASAPVNM 255
>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
pdb|3VTY|A Chain A, Crystal Structure Of Mama
pdb|3VTY|B Chain B, Crystal Structure Of Mama
pdb|3VTY|C Chain C, Crystal Structure Of Mama
pdb|3VTY|D Chain D, Crystal Structure Of Mama
Length = 184
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 130 YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDL 171
+D I+ +VL D NV+ L + G+ Y DIG +A+ L
Sbjct: 21 FDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESL 62
>pdb|1RV6|X Chain X, Crystal Structure Of Plgf In Complex With Domain 2 Of
Vegfr1
pdb|1RV6|Y Chain Y, Crystal Structure Of Plgf In Complex With Domain 2 Of
Vegfr1
Length = 100
Score = 29.3 bits (64), Expect = 5.5, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 104 IHSSEGRTLLLACSLNSMSCYLKTKQY--DECIKVGSEVLAYDAKNVKALYRRGQAYKDI 161
IH +EGR L++ C + S + + K++ D I G ++ +D++ K YK+I
Sbjct: 17 IHMTEGRELVIPCRVTSPNITVTLKKFPLDTLIPDGKRII-WDSR--KGFIISNATYKEI 73
Query: 162 GRL 164
G L
Sbjct: 74 GLL 76
>pdb|2XAC|C Chain C, Structural Insights Into The Binding Of Vegf-B By
Vegfr-1d2: Recognition And Specificity
pdb|2XAC|X Chain X, Structural Insights Into The Binding Of Vegf-B By
Vegfr-1d2: Recognition And Specificity
Length = 98
Score = 29.3 bits (64), Expect = 5.5, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 104 IHSSEGRTLLLACSLNSMSCYLKTKQY--DECIKVGSEVLAYDAKNVKALYRRGQAYKDI 161
IH +EGR L++ C + S + + K++ D I G ++ +D++ K YK+I
Sbjct: 18 IHMTEGRELVIPCRVTSPNITVTLKKFPLDTLIPDGKRII-WDSR--KGFIISNATYKEI 74
Query: 162 GRL 164
G L
Sbjct: 75 GLL 77
>pdb|1FLT|X Chain X, Vegf In Complex With Domain 2 Of The Flt-1 Receptor
pdb|1FLT|Y Chain Y, Vegf In Complex With Domain 2 Of The Flt-1 Receptor
Length = 95
Score = 29.3 bits (64), Expect = 5.5, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 104 IHSSEGRTLLLACSLNSMSCYLKTKQY--DECIKVGSEVLAYDAKNVKALYRRGQAYKDI 161
IH +EGR L++ C + S + + K++ D I G ++ +D++ K YK+I
Sbjct: 15 IHMTEGRELVIPCRVTSPNITVTLKKFPLDTLIPDGKRII-WDSR--KGFIISNATYKEI 71
Query: 162 GRL 164
G L
Sbjct: 72 GLL 74
>pdb|1QSV|A Chain A, The Vegf-Binding Domain Of Flt-1, 20 Nmr Structures
pdb|1QSZ|A Chain A, The Vegf-Binding Domain Of Flt-1 (Minimized Mean)
pdb|1QTY|X Chain X, Vascular Endothelial Growth Factor In Complex With Domain
2 Of The Flt-1 Receptor
pdb|1QTY|Y Chain Y, Vascular Endothelial Growth Factor In Complex With Domain
2 Of The Flt-1 Receptor
pdb|1QTY|T Chain T, Vascular Endothelial Growth Factor In Complex With Domain
2 Of The Flt-1 Receptor
pdb|1QTY|U Chain U, Vascular Endothelial Growth Factor In Complex With Domain
2 Of The Flt-1 Receptor
Length = 101
Score = 29.3 bits (64), Expect = 5.5, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 104 IHSSEGRTLLLACSLNSMSCYLKTKQY--DECIKVGSEVLAYDAKNVKALYRRGQAYKDI 161
IH +EGR L++ C + S + + K++ D I G ++ +D++ K YK+I
Sbjct: 18 IHMTEGRELVIPCRVTSPNITVTLKKFPLDTLIPDGKRII-WDSR--KGFIISNATYKEI 74
Query: 162 GRL 164
G L
Sbjct: 75 GLL 77
>pdb|2ZBK|B Chain B, Crystal Structure Of An Intact Type Ii Dna Topoisomerase:
Insights Into Dna Transfer Mechanisms
pdb|2ZBK|D Chain D, Crystal Structure Of An Intact Type Ii Dna Topoisomerase:
Insights Into Dna Transfer Mechanisms
pdb|2ZBK|F Chain F, Crystal Structure Of An Intact Type Ii Dna Topoisomerase:
Insights Into Dna Transfer Mechanisms
pdb|2ZBK|H Chain H, Crystal Structure Of An Intact Type Ii Dna Topoisomerase:
Insights Into Dna Transfer Mechanisms
Length = 530
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 254 KPEFLPDLKDDPESIRSFQNFISNANPDSFAALSGGKAGEISPDMFKAVSIMINKMSPEE 313
K + L LK PE RS F+++ N + L EIS +FK +S ++ ++ EE
Sbjct: 465 KKKLLAYLKYIPEVSRSLATFLASGNKE----LVSKYQNEISEGLFKLISKKLDLINIEE 520
Query: 314 LQRMIQIAS 322
+++ ++ S
Sbjct: 521 YRKVYRVDS 529
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.127 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,066,320
Number of Sequences: 62578
Number of extensions: 639975
Number of successful extensions: 1516
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1433
Number of HSP's gapped (non-prelim): 84
length of query: 559
length of database: 14,973,337
effective HSP length: 104
effective length of query: 455
effective length of database: 8,465,225
effective search space: 3851677375
effective search space used: 3851677375
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)