Query 008613
Match_columns 559
No_of_seqs 390 out of 2655
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 14:22:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008613.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008613hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0553 TPR repeat-containing 99.9 2.2E-20 4.8E-25 186.6 20.5 122 67-197 77-198 (304)
2 KOG0543 FKBP-type peptidyl-pro 99.7 2E-17 4.3E-22 171.5 15.1 147 66-212 203-356 (397)
3 KOG4234 TPR repeat-containing 99.7 1.2E-16 2.7E-21 151.0 14.2 127 66-196 90-216 (271)
4 KOG4626 O-linked N-acetylgluco 99.6 1.3E-15 2.9E-20 162.9 10.4 171 65-276 246-416 (966)
5 KOG0545 Aryl-hydrocarbon recep 99.6 3.2E-15 7E-20 145.3 11.8 161 20-197 144-314 (329)
6 PRK15359 type III secretion sy 99.6 3.1E-14 6.7E-19 131.6 16.5 114 74-196 27-140 (144)
7 KOG0548 Molecular co-chaperone 99.6 1.5E-14 3.3E-19 153.7 15.8 121 66-195 353-473 (539)
8 KOG0550 Molecular chaperone (D 99.6 1.4E-14 3E-19 149.8 14.5 129 66-200 244-372 (486)
9 KOG0547 Translocase of outer m 99.6 2.1E-14 4.5E-19 150.8 14.0 121 67-196 111-232 (606)
10 KOG4648 Uncharacterized conser 99.6 1.5E-14 3.2E-19 146.3 11.1 118 67-193 93-210 (536)
11 PLN03088 SGT1, suppressor of 99.5 8.4E-14 1.8E-18 147.4 16.2 118 72-198 3-120 (356)
12 KOG4626 O-linked N-acetylgluco 99.5 1.5E-13 3.2E-18 147.5 13.7 186 54-281 303-488 (966)
13 KOG1308 Hsp70-interacting prot 99.5 2.4E-14 5.2E-19 145.3 5.9 242 67-322 110-370 (377)
14 TIGR02552 LcrH_SycD type III s 99.5 9.5E-13 2.1E-17 118.8 15.7 122 65-195 11-132 (135)
15 KOG0548 Molecular co-chaperone 99.5 1.6E-13 3.6E-18 146.0 11.9 113 71-192 2-114 (539)
16 KOG0551 Hsp90 co-chaperone CNS 99.5 2.5E-13 5.5E-18 137.2 12.3 109 69-182 79-187 (390)
17 KOG0553 TPR repeat-containing 99.5 1.8E-12 3.8E-17 130.2 17.3 87 114-200 81-167 (304)
18 PRK10370 formate-dependent nit 99.4 4.3E-12 9.4E-17 123.6 18.1 130 50-188 52-184 (198)
19 PRK15363 pathogenicity island 99.4 3.1E-12 6.7E-17 118.6 15.1 104 71-183 35-138 (157)
20 TIGR00990 3a0801s09 mitochondr 99.4 3.5E-12 7.5E-17 144.4 14.4 134 67-209 327-460 (615)
21 TIGR00990 3a0801s09 mitochondr 99.4 6.5E-12 1.4E-16 142.2 16.5 149 52-209 346-494 (615)
22 PRK12370 invasion protein regu 99.3 3.1E-11 6.8E-16 135.1 19.2 144 52-204 319-463 (553)
23 PRK11189 lipoprotein NlpI; Pro 99.3 1.4E-11 3.1E-16 127.2 15.2 104 70-182 63-166 (296)
24 KOG0624 dsRNA-activated protei 99.3 1.3E-10 2.9E-15 118.0 21.2 128 67-199 265-392 (504)
25 PRK09782 bacteriophage N4 rece 99.3 4.2E-11 9.1E-16 141.0 19.2 166 30-205 553-734 (987)
26 PRK12370 invasion protein regu 99.3 1.4E-11 3E-16 138.0 13.8 143 45-196 269-420 (553)
27 PRK09782 bacteriophage N4 rece 99.3 1E-10 2.2E-15 137.8 18.8 128 72-209 577-704 (987)
28 TIGR02795 tol_pal_ybgF tol-pal 99.3 1.4E-10 3.1E-15 101.3 14.6 112 71-188 2-116 (119)
29 KOG0376 Serine-threonine phosp 99.3 8.5E-12 1.8E-16 132.1 7.7 119 71-198 4-122 (476)
30 KOG4642 Chaperone-dependent E3 99.2 2.2E-11 4.8E-16 118.5 9.6 115 71-194 10-129 (284)
31 TIGR02521 type_IV_pilW type IV 99.2 1.2E-09 2.7E-14 104.7 21.2 138 54-198 82-219 (234)
32 PRK15359 type III secretion sy 99.2 2.8E-10 6.1E-15 105.2 15.8 101 53-162 40-140 (144)
33 TIGR02521 type_IV_pilW type IV 99.2 3.2E-10 6.8E-15 108.9 16.8 142 56-206 50-193 (234)
34 PRK15179 Vi polysaccharide bio 99.2 1.6E-10 3.4E-15 131.6 14.3 144 58-210 73-216 (694)
35 PRK15174 Vi polysaccharide exp 99.2 5.1E-10 1.1E-14 127.7 18.4 120 77-205 218-341 (656)
36 PRK15174 Vi polysaccharide exp 99.2 5.5E-10 1.2E-14 127.5 17.5 143 58-209 233-379 (656)
37 PRK10370 formate-dependent nit 99.2 5.5E-10 1.2E-14 108.8 15.0 105 83-196 51-158 (198)
38 KOG1155 Anaphase-promoting com 99.2 2.1E-10 4.5E-15 120.5 12.6 176 74-300 333-508 (559)
39 KOG1126 DNA-binding cell divis 99.2 1.6E-10 3.5E-15 126.0 12.2 149 51-208 469-617 (638)
40 PF13429 TPR_15: Tetratricopep 99.2 2.2E-10 4.7E-15 116.9 11.9 132 69-209 144-275 (280)
41 KOG1126 DNA-binding cell divis 99.2 7.4E-11 1.6E-15 128.6 8.7 136 65-209 415-550 (638)
42 KOG0547 Translocase of outer m 99.1 3.6E-10 7.8E-15 119.4 12.6 122 69-199 324-445 (606)
43 PF13414 TPR_11: TPR repeat; P 99.1 1.8E-10 3.8E-15 92.1 8.0 66 114-179 3-69 (69)
44 TIGR03302 OM_YfiO outer membra 99.1 2E-09 4.4E-14 106.5 17.0 155 27-202 41-223 (235)
45 cd00189 TPR Tetratricopeptide 99.1 5.4E-10 1.2E-14 90.3 10.5 99 73-180 2-100 (100)
46 PRK02603 photosystem I assembl 99.1 2.2E-09 4.8E-14 101.8 16.1 109 67-181 31-153 (172)
47 KOG1173 Anaphase-promoting com 99.1 1.7E-09 3.6E-14 116.2 16.1 122 71-194 414-535 (611)
48 KOG1155 Anaphase-promoting com 99.1 9.5E-10 2.1E-14 115.7 13.6 144 58-210 351-494 (559)
49 KOG1125 TPR repeat-containing 99.1 3.8E-10 8.3E-15 121.5 10.5 118 70-196 429-556 (579)
50 PLN02789 farnesyltranstransfer 99.1 5.4E-09 1.2E-13 109.1 17.5 124 63-195 63-189 (320)
51 CHL00033 ycf3 photosystem I as 99.1 6.8E-09 1.5E-13 98.0 16.5 109 67-181 31-153 (168)
52 PRK11189 lipoprotein NlpI; Pro 99.0 3.6E-09 7.8E-14 109.3 15.6 115 53-177 80-194 (296)
53 PF13414 TPR_11: TPR repeat; P 99.0 4.4E-10 9.5E-15 89.8 6.7 66 71-145 3-69 (69)
54 PRK11447 cellulose synthase su 99.0 1.3E-08 2.9E-13 123.3 22.7 143 51-193 283-430 (1157)
55 TIGR03302 OM_YfiO outer membra 99.0 4.6E-09 1E-13 104.0 15.2 117 69-191 31-158 (235)
56 PRK15179 Vi polysaccharide bio 99.0 1.2E-08 2.6E-13 116.3 20.1 135 56-199 105-243 (694)
57 KOG0624 dsRNA-activated protei 99.0 1.4E-09 3.1E-14 110.7 11.1 115 68-191 35-152 (504)
58 COG3063 PilF Tfp pilus assembl 99.0 1.5E-08 3.2E-13 98.8 16.9 118 59-186 57-177 (250)
59 TIGR02917 PEP_TPR_lipo putativ 99.0 7.2E-09 1.6E-13 119.3 17.4 133 58-200 757-889 (899)
60 PRK15331 chaperone protein Sic 99.0 7.7E-09 1.7E-13 96.6 14.2 116 71-196 37-152 (165)
61 TIGR02917 PEP_TPR_lipo putativ 99.0 1.6E-08 3.5E-13 116.4 20.0 124 68-200 122-245 (899)
62 COG3063 PilF Tfp pilus assembl 99.0 9.1E-09 2E-13 100.3 14.7 132 58-196 90-221 (250)
63 PF12895 Apc3: Anaphase-promot 99.0 1.1E-09 2.3E-14 91.4 7.2 83 84-174 2-84 (84)
64 PRK11447 cellulose synthase su 99.0 9.6E-09 2.1E-13 124.5 18.4 141 52-192 366-539 (1157)
65 COG4235 Cytochrome c biogenesi 99.0 1.1E-08 2.3E-13 103.7 15.4 139 48-195 133-274 (287)
66 KOG2003 TPR repeat-containing 99.0 1.7E-09 3.7E-14 113.1 9.7 124 66-198 485-608 (840)
67 KOG0550 Molecular chaperone (D 99.0 1.2E-09 2.6E-14 113.6 8.4 156 54-209 186-348 (486)
68 PRK10049 pgaA outer membrane p 98.9 2.7E-08 5.9E-13 115.7 19.5 115 71-195 49-163 (765)
69 PRK10803 tol-pal system protei 98.9 2.6E-08 5.7E-13 101.1 16.7 110 72-187 143-256 (263)
70 PF13432 TPR_16: Tetratricopep 98.9 3.1E-09 6.8E-14 83.9 7.8 65 118-182 1-65 (65)
71 PRK11788 tetratricopeptide rep 98.9 2.8E-08 6.1E-13 105.3 17.4 143 55-201 125-268 (389)
72 TIGR02552 LcrH_SycD type III s 98.9 3.1E-09 6.7E-14 95.7 8.3 109 92-209 4-112 (135)
73 PRK11788 tetratricopeptide rep 98.9 7.1E-08 1.5E-12 102.3 19.8 126 71-206 180-306 (389)
74 KOG1125 TPR repeat-containing 98.9 1.9E-08 4.2E-13 108.5 15.2 203 4-206 285-522 (579)
75 COG5010 TadD Flp pilus assembl 98.9 4.3E-08 9.3E-13 97.2 15.5 126 66-200 95-220 (257)
76 PLN02789 farnesyltranstransfer 98.9 7.3E-08 1.6E-12 100.7 17.4 131 55-194 90-229 (320)
77 KOG4555 TPR repeat-containing 98.9 6.3E-08 1.4E-12 86.6 14.1 104 67-179 39-146 (175)
78 PLN03088 SGT1, suppressor of 98.9 3.6E-08 7.9E-13 104.6 14.9 114 23-163 6-119 (356)
79 PRK15363 pathogenicity island 98.9 7.2E-08 1.6E-12 89.7 15.0 108 13-147 24-136 (157)
80 PRK10049 pgaA outer membrane p 98.8 1.2E-07 2.7E-12 110.2 19.9 105 72-185 360-464 (765)
81 PF09976 TPR_21: Tetratricopep 98.8 1.2E-07 2.5E-12 87.5 15.2 102 67-175 44-145 (145)
82 COG4783 Putative Zn-dependent 98.8 1.5E-07 3.3E-12 100.2 17.3 131 56-195 325-455 (484)
83 COG4783 Putative Zn-dependent 98.8 8.3E-08 1.8E-12 102.2 14.7 125 68-201 303-427 (484)
84 PF13432 TPR_16: Tetratricopep 98.8 1.4E-08 3.1E-13 80.1 6.1 64 76-148 2-65 (65)
85 PRK10866 outer membrane biogen 98.8 2.4E-07 5.3E-12 93.1 16.5 124 70-199 31-178 (243)
86 PF13525 YfiO: Outer membrane 98.8 2.8E-07 6.1E-12 90.0 16.4 123 70-198 4-143 (203)
87 PF13512 TPR_18: Tetratricopep 98.8 2.2E-07 4.7E-12 85.1 14.2 110 71-186 10-137 (142)
88 PF13371 TPR_9: Tetratricopept 98.7 6.3E-08 1.4E-12 78.0 8.7 69 121-189 2-70 (73)
89 PF13429 TPR_15: Tetratricopep 98.7 2.2E-08 4.7E-13 102.1 6.3 133 70-209 109-241 (280)
90 PF12688 TPR_5: Tetratrico pep 98.6 5E-07 1.1E-11 81.0 12.9 99 72-176 2-103 (120)
91 KOG2002 TPR-containing nuclear 98.6 7.3E-07 1.6E-11 101.2 16.9 170 20-195 215-389 (1018)
92 KOG2076 RNA polymerase III tra 98.6 3.8E-07 8.3E-12 102.8 14.4 102 71-181 139-240 (895)
93 KOG4162 Predicted calmodulin-b 98.6 4E-07 8.7E-12 101.2 13.7 117 58-183 671-789 (799)
94 KOG3060 Uncharacterized conser 98.6 1.8E-06 4E-11 85.4 16.8 128 58-197 76-203 (289)
95 COG1729 Uncharacterized protei 98.6 1E-06 2.2E-11 88.4 15.1 110 72-187 142-254 (262)
96 PF13371 TPR_9: Tetratricopept 98.6 2.5E-07 5.5E-12 74.4 8.7 70 78-156 2-71 (73)
97 cd00189 TPR Tetratricopeptide 98.6 2.4E-07 5.2E-12 74.5 8.6 85 116-200 2-86 (100)
98 CHL00033 ycf3 photosystem I as 98.6 2.3E-07 5E-12 87.5 9.6 113 78-197 6-121 (168)
99 PF14559 TPR_19: Tetratricopep 98.6 1.6E-07 3.5E-12 74.5 7.1 67 124-190 1-67 (68)
100 KOG2002 TPR-containing nuclear 98.6 5E-07 1.1E-11 102.5 12.8 131 60-199 635-767 (1018)
101 PF14559 TPR_19: Tetratricopep 98.5 1.4E-07 3.1E-12 74.8 5.8 67 81-156 1-67 (68)
102 PRK14574 hmsH outer membrane p 98.5 2.4E-06 5.3E-11 99.4 18.2 115 71-195 102-216 (822)
103 KOG2076 RNA polymerase III tra 98.5 2.9E-06 6.3E-11 95.8 18.0 104 67-179 169-272 (895)
104 COG5010 TadD Flp pilus assembl 98.5 9.7E-07 2.1E-11 87.7 12.6 120 71-200 67-186 (257)
105 cd05804 StaR_like StaR_like; a 98.5 2.1E-06 4.5E-11 89.9 16.1 100 71-179 114-217 (355)
106 PLN03098 LPA1 LOW PSII ACCUMUL 98.5 2.6E-07 5.7E-12 98.7 8.9 69 109-177 70-141 (453)
107 TIGR02795 tol_pal_ybgF tol-pal 98.5 6.8E-07 1.5E-11 77.8 9.2 94 116-209 4-103 (119)
108 PRK14574 hmsH outer membrane p 98.5 2.3E-06 5E-11 99.5 16.0 130 53-192 50-179 (822)
109 KOG4648 Uncharacterized conser 98.5 8.5E-07 1.8E-11 90.7 10.8 93 117-209 100-192 (536)
110 TIGR00540 hemY_coli hemY prote 98.5 2.7E-06 5.8E-11 91.9 15.4 133 69-209 261-397 (409)
111 PF13424 TPR_12: Tetratricopep 98.5 9.1E-07 2E-11 72.3 9.0 73 69-143 3-75 (78)
112 PF09976 TPR_21: Tetratricopep 98.5 2.5E-06 5.4E-11 78.6 12.8 133 68-207 8-143 (145)
113 KOG1840 Kinesin light chain [C 98.5 3.3E-06 7.2E-11 92.8 15.8 145 67-212 237-397 (508)
114 PRK02603 photosystem I assembl 98.4 2.1E-06 4.5E-11 81.4 11.7 88 113-200 34-124 (172)
115 KOG0546 HSP90 co-chaperone CPR 98.4 2.5E-07 5.3E-12 95.2 5.6 135 66-200 217-361 (372)
116 PF06552 TOM20_plant: Plant sp 98.4 1.3E-06 2.8E-11 82.7 9.9 99 87-194 7-126 (186)
117 KOG1129 TPR repeat-containing 98.4 4.6E-07 1E-11 92.2 7.2 170 19-197 255-444 (478)
118 cd05804 StaR_like StaR_like; a 98.4 3.3E-06 7.2E-11 88.4 13.9 136 58-200 64-204 (355)
119 PLN03098 LPA1 LOW PSII ACCUMUL 98.4 1E-06 2.2E-11 94.2 9.8 72 67-144 71-142 (453)
120 PF13424 TPR_12: Tetratricopep 98.4 8.1E-07 1.7E-11 72.6 7.0 67 112-178 3-76 (78)
121 PRK10866 outer membrane biogen 98.4 5.3E-05 1.2E-09 76.3 21.1 150 24-194 37-221 (243)
122 PRK10153 DNA-binding transcrip 98.4 1.6E-05 3.6E-10 88.2 19.0 128 46-183 351-488 (517)
123 KOG2003 TPR repeat-containing 98.4 1.1E-05 2.3E-10 85.2 15.6 118 66-192 587-704 (840)
124 PF12569 NARP1: NMDA receptor- 98.3 8.5E-06 1.8E-10 90.2 15.5 144 51-194 18-274 (517)
125 PRK14720 transcript cleavage f 98.3 2.9E-06 6.3E-11 98.3 11.8 146 31-179 24-180 (906)
126 COG2956 Predicted N-acetylgluc 98.3 1.5E-05 3.3E-10 81.4 15.1 127 70-200 140-267 (389)
127 KOG1128 Uncharacterized conser 98.3 7.2E-07 1.6E-11 98.7 6.1 119 71-198 485-603 (777)
128 COG4785 NlpI Lipoprotein NlpI, 98.3 2.2E-06 4.8E-11 83.0 8.6 114 67-189 61-176 (297)
129 KOG1156 N-terminal acetyltrans 98.3 5.9E-06 1.3E-10 90.6 12.1 142 50-200 20-161 (700)
130 PRK14720 transcript cleavage f 98.3 9E-06 2E-10 94.3 14.2 134 66-201 26-168 (906)
131 PRK11906 transcriptional regul 98.3 1.6E-05 3.5E-10 85.3 14.9 133 41-182 262-406 (458)
132 KOG1174 Anaphase-promoting com 98.3 6E-06 1.3E-10 86.4 11.3 143 54-206 317-495 (564)
133 PRK10803 tol-pal system protei 98.3 3.8E-06 8.3E-11 85.4 9.8 100 114-213 142-248 (263)
134 PF14938 SNAP: Soluble NSF att 98.3 4.3E-05 9.3E-10 78.5 17.6 112 67-181 110-229 (282)
135 KOG3060 Uncharacterized conser 98.3 4.4E-05 9.6E-10 75.8 16.6 131 57-196 106-239 (289)
136 KOG1840 Kinesin light chain [C 98.2 9E-06 2E-10 89.4 12.7 134 66-200 278-427 (508)
137 PF13525 YfiO: Outer membrane 98.2 0.0001 2.2E-09 72.1 18.8 151 24-195 10-191 (203)
138 COG4235 Cytochrome c biogenesi 98.2 2.9E-05 6.4E-10 78.9 15.3 100 87-195 138-240 (287)
139 TIGR00540 hemY_coli hemY prote 98.2 6.7E-05 1.4E-09 81.1 19.1 120 55-182 102-221 (409)
140 PRK10747 putative protoheme IX 98.2 1.5E-05 3.3E-10 85.9 13.7 130 67-209 259-388 (398)
141 KOG1173 Anaphase-promoting com 98.2 9.1E-06 2E-10 88.0 11.5 188 58-279 299-486 (611)
142 KOG0543 FKBP-type peptidyl-pro 98.2 9.2E-06 2E-10 85.3 11.2 100 71-179 257-357 (397)
143 KOG1310 WD40 repeat protein [G 98.2 3.4E-06 7.3E-11 90.4 7.4 117 66-191 369-488 (758)
144 PRK15331 chaperone protein Sic 98.2 4.5E-05 9.8E-10 71.5 13.7 116 15-159 29-148 (165)
145 PF12968 DUF3856: Domain of Un 98.2 5.8E-05 1.3E-09 66.7 13.3 104 74-177 12-129 (144)
146 KOG1156 N-terminal acetyltrans 98.1 3.5E-05 7.7E-10 84.6 14.4 120 72-200 8-127 (700)
147 KOG1308 Hsp70-interacting prot 98.1 2.2E-06 4.7E-11 88.0 4.7 79 122-200 122-200 (377)
148 KOG1174 Anaphase-promoting com 98.1 1E-05 2.2E-10 84.8 9.5 132 68-199 229-385 (564)
149 KOG4234 TPR repeat-containing 98.1 6E-06 1.3E-10 79.2 6.9 97 119-216 100-201 (271)
150 KOG4162 Predicted calmodulin-b 98.1 1.4E-05 3E-10 89.2 10.6 124 71-203 650-775 (799)
151 KOG1129 TPR repeat-containing 98.1 1.6E-05 3.5E-10 81.1 10.1 119 71-198 256-374 (478)
152 KOG1127 TPR repeat-containing 98.1 1.1E-05 2.3E-10 92.0 9.5 152 58-209 479-657 (1238)
153 PRK10747 putative protoheme IX 98.1 0.00026 5.6E-09 76.3 19.6 107 72-186 119-225 (398)
154 COG2956 Predicted N-acetylgluc 98.1 0.00066 1.4E-08 69.7 20.9 107 66-181 175-282 (389)
155 PRK10153 DNA-binding transcrip 98.0 3.3E-05 7E-10 85.9 12.3 129 71-209 339-480 (517)
156 PF12688 TPR_5: Tetratrico pep 98.0 4E-05 8.7E-10 68.7 10.4 85 116-200 3-93 (120)
157 KOG0495 HAT repeat protein [RN 98.0 0.00018 3.8E-09 79.3 16.3 136 52-197 599-734 (913)
158 PF03704 BTAD: Bacterial trans 98.0 0.0003 6.5E-09 64.5 15.6 107 71-177 6-125 (146)
159 PF12895 Apc3: Anaphase-promot 98.0 1.8E-05 4E-10 65.7 6.6 61 70-140 24-84 (84)
160 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 7.5E-05 1.6E-09 80.1 12.6 95 74-177 203-297 (395)
161 PF14938 SNAP: Soluble NSF att 97.9 9.4E-05 2E-09 75.9 12.3 112 64-179 68-186 (282)
162 PRK11906 transcriptional regul 97.9 3.6E-05 7.9E-10 82.6 9.3 117 74-199 258-389 (458)
163 COG4105 ComL DNA uptake lipopr 97.9 0.00041 8.9E-09 69.4 15.6 123 71-199 34-170 (254)
164 KOG1128 Uncharacterized conser 97.9 0.00011 2.3E-09 82.0 12.4 120 50-178 498-617 (777)
165 PF04733 Coatomer_E: Coatomer 97.9 0.00024 5.2E-09 73.4 14.1 103 75-186 169-274 (290)
166 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00025 5.5E-09 76.0 13.4 110 80-201 178-287 (395)
167 COG1729 Uncharacterized protei 97.8 7.4E-05 1.6E-09 75.2 8.7 97 117-213 144-246 (262)
168 PF13512 TPR_18: Tetratricopep 97.8 0.00041 8.9E-09 63.8 12.5 85 60-150 36-135 (142)
169 PF00515 TPR_1: Tetratricopept 97.7 4.7E-05 1E-09 52.0 4.3 31 116-146 3-33 (34)
170 KOG1130 Predicted G-alpha GTPa 97.7 0.00033 7.3E-09 73.6 12.3 126 71-199 235-372 (639)
171 PF00515 TPR_1: Tetratricopept 97.7 6E-05 1.3E-09 51.5 4.6 34 148-181 1-34 (34)
172 KOG1127 TPR repeat-containing 97.7 0.00026 5.6E-09 81.1 12.0 114 70-192 561-674 (1238)
173 PRK10941 hypothetical protein; 97.7 0.00036 7.8E-09 71.2 12.1 79 108-186 175-253 (269)
174 PF13428 TPR_14: Tetratricopep 97.7 9.5E-05 2.1E-09 54.0 5.3 39 117-155 4-42 (44)
175 PF13431 TPR_17: Tetratricopep 97.7 5.3E-05 1.2E-09 52.4 3.6 34 136-169 1-34 (34)
176 KOG2376 Signal recognition par 97.6 0.00086 1.9E-08 73.4 14.5 128 24-182 17-144 (652)
177 KOG4642 Chaperone-dependent E3 97.6 0.00013 2.8E-09 71.9 7.3 76 119-194 15-90 (284)
178 KOG4555 TPR repeat-containing 97.6 0.00038 8.3E-09 62.8 9.4 62 119-180 48-109 (175)
179 PF13428 TPR_14: Tetratricopep 97.6 0.00015 3.1E-09 53.0 5.6 43 148-190 1-43 (44)
180 COG4700 Uncharacterized protei 97.6 0.00098 2.1E-08 63.7 11.6 103 70-181 88-193 (251)
181 PF07719 TPR_2: Tetratricopept 97.5 0.0002 4.3E-09 48.6 5.2 32 149-180 2-33 (34)
182 PF15015 NYD-SP12_N: Spermatog 97.5 0.00085 1.8E-08 70.8 11.6 107 71-177 176-291 (569)
183 KOG4340 Uncharacterized conser 97.5 0.0017 3.8E-08 65.9 13.2 153 81-276 20-172 (459)
184 PF04733 Coatomer_E: Coatomer 97.5 0.00092 2E-08 69.1 11.6 117 71-198 131-251 (290)
185 KOG0495 HAT repeat protein [RN 97.5 0.0055 1.2E-07 68.0 17.8 105 71-184 685-789 (913)
186 PF07719 TPR_2: Tetratricopept 97.5 0.00024 5.3E-09 48.1 4.9 33 115-147 2-34 (34)
187 KOG2376 Signal recognition par 97.5 0.0073 1.6E-07 66.4 18.5 144 21-177 29-204 (652)
188 COG0457 NrfG FOG: TPR repeat [ 97.5 0.0071 1.5E-07 55.2 16.3 121 67-196 91-216 (291)
189 KOG3785 Uncharacterized conser 97.5 0.0013 2.9E-08 68.1 12.0 109 77-194 63-231 (557)
190 PF06552 TOM20_plant: Plant sp 97.4 0.00063 1.4E-08 64.7 8.9 80 61-149 15-115 (186)
191 COG2976 Uncharacterized protei 97.4 0.012 2.5E-07 56.8 17.2 119 55-181 73-192 (207)
192 KOG0551 Hsp90 co-chaperone CNS 97.4 0.00091 2E-08 68.8 10.1 85 113-197 80-168 (390)
193 KOG1130 Predicted G-alpha GTPa 97.4 0.00025 5.4E-09 74.6 5.7 128 70-200 194-333 (639)
194 KOG4151 Myosin assembly protei 97.4 0.00098 2.1E-08 75.3 10.5 126 66-196 48-175 (748)
195 KOG2471 TPR repeat-containing 97.3 0.00071 1.5E-08 72.5 8.1 125 70-195 239-382 (696)
196 KOG3081 Vesicle coat complex C 97.3 0.017 3.6E-07 58.2 17.1 109 76-195 142-254 (299)
197 KOG4340 Uncharacterized conser 97.2 0.007 1.5E-07 61.7 13.2 93 70-171 143-264 (459)
198 PF14853 Fis1_TPR_C: Fis1 C-te 97.2 0.0023 4.9E-08 48.9 7.6 49 149-197 2-50 (53)
199 COG0457 NrfG FOG: TPR repeat [ 97.2 0.022 4.7E-07 52.0 15.8 108 80-193 139-247 (291)
200 KOG1586 Protein required for f 97.1 0.051 1.1E-06 53.9 18.6 123 70-195 112-244 (288)
201 PF12569 NARP1: NMDA receptor- 97.1 0.0031 6.6E-08 70.2 11.6 128 72-208 195-331 (517)
202 PF13431 TPR_17: Tetratricopep 97.1 0.00035 7.6E-09 48.3 2.3 34 93-135 1-34 (34)
203 COG3071 HemY Uncharacterized e 97.1 0.027 5.9E-07 59.4 17.3 117 71-200 263-379 (400)
204 PF10300 DUF3808: Protein of u 97.1 0.005 1.1E-07 67.9 12.6 120 52-176 248-375 (468)
205 KOG4814 Uncharacterized conser 97.1 0.014 2.9E-07 64.7 15.2 105 71-178 354-458 (872)
206 KOG3785 Uncharacterized conser 97.0 0.0032 6.8E-08 65.4 9.1 107 79-197 30-136 (557)
207 COG4105 ComL DNA uptake lipopr 97.0 0.062 1.3E-06 54.0 18.0 125 67-197 67-216 (254)
208 PLN03081 pentatricopeptide (PP 97.0 0.021 4.6E-07 66.0 16.9 117 72-199 463-605 (697)
209 KOG0376 Serine-threonine phosp 96.9 0.00031 6.8E-09 75.4 1.3 77 116-192 6-82 (476)
210 KOG2796 Uncharacterized conser 96.9 0.0095 2.1E-07 59.8 10.9 111 69-182 210-320 (366)
211 KOG4507 Uncharacterized conser 96.8 0.0021 4.5E-08 70.3 6.6 110 76-193 612-721 (886)
212 PRK04841 transcriptional regul 96.8 0.031 6.8E-07 66.2 17.2 106 71-179 491-604 (903)
213 PF13181 TPR_8: Tetratricopept 96.8 0.0019 4.1E-08 43.8 4.1 30 116-145 3-32 (34)
214 PF13181 TPR_8: Tetratricopept 96.8 0.0022 4.7E-08 43.5 4.3 34 148-181 1-34 (34)
215 COG4785 NlpI Lipoprotein NlpI, 96.7 0.0043 9.3E-08 60.7 7.1 80 111-190 62-141 (297)
216 KOG2610 Uncharacterized conser 96.7 0.091 2E-06 54.6 16.8 150 23-172 50-233 (491)
217 PLN03077 Protein ECB2; Provisi 96.6 0.088 1.9E-06 62.4 18.8 118 71-199 625-768 (857)
218 KOG3364 Membrane protein invol 96.6 0.017 3.6E-07 52.5 9.5 85 114-198 32-121 (149)
219 COG2912 Uncharacterized conser 96.6 0.014 3E-07 59.2 9.9 77 109-185 176-252 (269)
220 COG3118 Thioredoxin domain-con 96.5 0.071 1.5E-06 54.6 14.6 117 71-196 134-286 (304)
221 PF14853 Fis1_TPR_C: Fis1 C-te 96.5 0.0096 2.1E-07 45.5 6.5 42 116-157 3-44 (53)
222 KOG1586 Protein required for f 96.5 0.099 2.2E-06 51.9 14.8 123 58-184 61-190 (288)
223 COG3071 HemY Uncharacterized e 96.5 0.032 7E-07 58.9 12.1 86 48-143 305-390 (400)
224 KOG1941 Acetylcholine receptor 96.4 0.029 6.3E-07 58.6 11.1 108 71-178 162-276 (518)
225 PF09986 DUF2225: Uncharacteri 96.3 0.046 9.9E-07 54.0 11.9 97 80-178 86-195 (214)
226 PRK04841 transcriptional regul 96.3 0.081 1.8E-06 62.7 15.8 108 71-179 531-643 (903)
227 PF10602 RPN7: 26S proteasome 96.2 0.11 2.4E-06 49.8 13.7 103 68-176 33-141 (177)
228 PF13174 TPR_6: Tetratricopept 96.2 0.0075 1.6E-07 40.3 4.0 31 116-146 2-32 (33)
229 PF05843 Suf: Suppressor of fo 96.2 0.043 9.2E-07 56.4 11.2 114 74-196 4-121 (280)
230 PF13174 TPR_6: Tetratricopept 96.2 0.0091 2E-07 39.8 4.3 33 149-181 1-33 (33)
231 PF04184 ST7: ST7 protein; In 96.1 0.24 5.2E-06 54.1 16.7 66 112-177 257-324 (539)
232 KOG1941 Acetylcholine receptor 96.1 0.012 2.6E-07 61.5 6.6 127 72-201 123-265 (518)
233 KOG3824 Huntingtin interacting 96.1 0.034 7.4E-07 57.0 9.5 104 69-181 114-221 (472)
234 smart00028 TPR Tetratricopepti 96.0 0.011 2.5E-07 37.5 4.1 31 116-146 3-33 (34)
235 KOG3081 Vesicle coat complex C 96.0 0.64 1.4E-05 47.1 18.1 92 84-184 186-278 (299)
236 KOG2053 Mitochondrial inherita 96.0 0.14 2.9E-06 59.1 14.6 145 45-199 17-162 (932)
237 PF04781 DUF627: Protein of un 96.0 0.047 1E-06 48.1 8.6 96 77-178 2-108 (111)
238 PLN03218 maturation of RBCL 1; 95.9 0.29 6.4E-06 59.2 18.3 115 72-195 615-732 (1060)
239 PF13176 TPR_7: Tetratricopept 95.9 0.012 2.6E-07 40.9 4.0 26 117-142 2-27 (36)
240 KOG0545 Aryl-hydrocarbon recep 95.9 0.02 4.4E-07 57.0 6.8 85 113-197 177-279 (329)
241 COG4700 Uncharacterized protei 95.9 0.059 1.3E-06 51.8 9.6 121 79-209 64-187 (251)
242 PLN03077 Protein ECB2; Provisi 95.9 0.21 4.6E-06 59.2 16.7 113 76-197 594-706 (857)
243 PLN03081 pentatricopeptide (PP 95.8 0.19 4.1E-06 58.2 15.8 116 73-197 428-543 (697)
244 PF03704 BTAD: Bacterial trans 95.8 0.071 1.5E-06 48.7 10.0 64 70-142 61-124 (146)
245 KOG2053 Mitochondrial inherita 95.8 0.073 1.6E-06 61.2 11.8 92 80-180 18-109 (932)
246 smart00028 TPR Tetratricopepti 95.8 0.013 2.9E-07 37.1 3.7 33 149-181 2-34 (34)
247 PF04184 ST7: ST7 protein; In 95.8 0.12 2.7E-06 56.2 12.8 104 73-183 261-381 (539)
248 PRK10941 hypothetical protein; 95.6 0.096 2.1E-06 53.6 10.9 79 71-158 181-259 (269)
249 PLN03218 maturation of RBCL 1; 95.6 0.25 5.5E-06 59.8 15.9 62 116-177 581-643 (1060)
250 PF08631 SPO22: Meiosis protei 95.6 0.9 2E-05 46.5 18.0 113 67-179 31-152 (278)
251 KOG1915 Cell cycle control pro 95.6 0.3 6.5E-06 53.0 14.4 116 58-182 60-175 (677)
252 PRK13184 pknD serine/threonine 95.5 0.065 1.4E-06 63.4 10.4 117 74-197 478-601 (932)
253 KOG3364 Membrane protein invol 95.4 0.23 5.1E-06 45.3 11.3 90 58-154 19-111 (149)
254 COG4976 Predicted methyltransf 95.4 0.021 4.6E-07 56.3 4.9 60 124-183 5-64 (287)
255 KOG1070 rRNA processing protei 95.4 0.41 8.9E-06 57.7 16.0 105 85-199 1511-1617(1710)
256 PF02259 FAT: FAT domain; Int 95.3 0.2 4.3E-06 52.2 12.4 111 70-180 183-341 (352)
257 PF13176 TPR_7: Tetratricopept 95.3 0.032 6.9E-07 38.7 4.2 29 150-178 1-29 (36)
258 KOG3824 Huntingtin interacting 95.2 0.064 1.4E-06 55.1 7.5 75 115-189 117-191 (472)
259 KOG1070 rRNA processing protei 95.1 0.44 9.4E-06 57.5 15.0 118 71-197 1530-1649(1710)
260 COG3898 Uncharacterized membra 94.9 2.8 6E-05 44.8 18.9 114 74-190 191-304 (531)
261 PF12862 Apc5: Anaphase-promot 94.9 0.13 2.7E-06 43.9 7.8 64 80-143 7-70 (94)
262 PF05843 Suf: Suppressor of fo 94.8 0.39 8.4E-06 49.3 12.6 107 71-186 35-145 (280)
263 COG4976 Predicted methyltransf 94.8 0.038 8.2E-07 54.6 4.6 60 80-148 4-63 (287)
264 KOG1915 Cell cycle control pro 94.7 0.46 1E-05 51.5 12.9 100 68-177 401-500 (677)
265 KOG1585 Protein required for f 94.6 1 2.2E-05 45.3 14.1 107 71-180 31-142 (308)
266 PF14561 TPR_20: Tetratricopep 94.5 0.19 4.1E-06 42.7 7.8 65 133-197 7-73 (90)
267 PF09613 HrpB1_HrpK: Bacterial 94.5 2.3 4.9E-05 40.1 15.5 114 70-194 9-122 (160)
268 KOG1585 Protein required for f 94.4 0.96 2.1E-05 45.4 13.4 107 69-178 108-220 (308)
269 PF14561 TPR_20: Tetratricopep 94.4 0.24 5.2E-06 42.1 8.1 73 90-171 7-81 (90)
270 KOG2396 HAT (Half-A-TPR) repea 94.2 0.35 7.5E-06 52.8 10.7 93 88-189 88-181 (568)
271 KOG2471 TPR repeat-containing 94.2 0.057 1.2E-06 58.4 4.8 90 71-160 283-381 (696)
272 COG2912 Uncharacterized conser 94.2 0.65 1.4E-05 47.3 12.1 79 71-158 181-259 (269)
273 PF12968 DUF3856: Domain of Un 94.2 1.3 2.7E-05 39.8 12.3 109 25-143 15-129 (144)
274 KOG2610 Uncharacterized conser 94.1 1.2 2.7E-05 46.5 13.9 95 79-182 183-283 (491)
275 PF02259 FAT: FAT domain; Int 94.1 1.4 3.1E-05 45.7 15.1 124 69-197 144-307 (352)
276 PF10579 Rapsyn_N: Rapsyn N-te 94.1 0.33 7.2E-06 40.1 7.9 67 71-143 6-72 (80)
277 KOG2796 Uncharacterized conser 93.9 0.33 7.1E-06 49.1 9.2 116 74-197 180-301 (366)
278 PF13374 TPR_10: Tetratricopep 93.9 0.12 2.5E-06 36.2 4.5 29 115-143 3-31 (42)
279 PF13281 DUF4071: Domain of un 93.7 0.75 1.6E-05 49.2 12.0 107 70-181 140-259 (374)
280 PF07079 DUF1347: Protein of u 93.4 1.2 2.6E-05 48.3 12.8 121 71-195 379-543 (549)
281 PF13281 DUF4071: Domain of un 93.4 8 0.00017 41.5 19.0 103 70-181 178-338 (374)
282 KOG1550 Extracellular protein 93.2 1.9 4.2E-05 48.6 15.1 104 73-191 290-405 (552)
283 PF10300 DUF3808: Protein of u 93.2 0.72 1.6E-05 51.0 11.4 98 84-190 246-347 (468)
284 PF08631 SPO22: Meiosis protei 92.8 2.2 4.7E-05 43.7 13.7 104 81-185 3-124 (278)
285 COG3118 Thioredoxin domain-con 92.7 3.9 8.4E-05 42.2 14.8 89 50-147 147-269 (304)
286 COG2976 Uncharacterized protei 92.6 0.7 1.5E-05 44.8 8.8 96 112-209 87-186 (207)
287 COG3914 Spy Predicted O-linked 92.1 2.1 4.6E-05 47.7 12.8 107 77-192 73-186 (620)
288 KOG4507 Uncharacterized conser 92.0 0.37 8E-06 53.4 6.9 101 74-181 215-316 (886)
289 COG3629 DnrI DNA-binding trans 91.9 1.5 3.3E-05 45.1 10.8 69 109-177 148-216 (280)
290 KOG0530 Protein farnesyltransf 91.7 1.3 2.9E-05 44.9 9.8 110 80-198 52-163 (318)
291 PF10345 Cohesin_load: Cohesin 91.6 9.4 0.0002 43.6 18.2 139 53-195 37-188 (608)
292 PF13374 TPR_10: Tetratricopep 91.5 0.43 9.4E-06 33.1 4.7 31 148-178 2-32 (42)
293 PF04910 Tcf25: Transcriptiona 91.2 9.1 0.0002 40.9 16.4 105 71-176 40-167 (360)
294 KOG0686 COP9 signalosome, subu 91.1 2.2 4.7E-05 45.7 11.2 99 71-175 150-256 (466)
295 PF11817 Foie-gras_1: Foie gra 91.0 2.4 5.2E-05 42.7 11.3 69 70-141 177-245 (247)
296 PF09613 HrpB1_HrpK: Bacterial 91.0 3 6.4E-05 39.3 11.0 84 114-197 10-93 (160)
297 COG3947 Response regulator con 90.9 1 2.3E-05 46.2 8.4 68 109-176 274-341 (361)
298 COG0790 FOG: TPR repeat, SEL1 90.7 6.1 0.00013 40.2 14.2 107 71-189 109-230 (292)
299 PF12862 Apc5: Anaphase-promot 90.6 1.1 2.4E-05 38.0 7.3 57 123-179 7-72 (94)
300 COG2909 MalT ATP-dependent tra 90.6 34 0.00074 40.3 20.9 109 69-177 413-526 (894)
301 KOG2300 Uncharacterized conser 90.5 17 0.00036 40.1 17.2 102 68-178 364-475 (629)
302 PF10516 SHNi-TPR: SHNi-TPR; 90.3 0.43 9.4E-06 33.9 3.6 29 149-177 2-30 (38)
303 KOG3617 WD40 and TPR repeat-co 90.2 6.2 0.00013 45.8 14.3 107 71-177 858-996 (1416)
304 KOG2047 mRNA splicing factor [ 90.1 2.5 5.3E-05 47.7 11.0 37 67-103 507-543 (835)
305 KOG2300 Uncharacterized conser 90.0 13 0.00028 40.9 15.9 127 44-172 16-151 (629)
306 KOG0529 Protein geranylgeranyl 89.5 13 0.00028 40.1 15.4 105 82-195 86-196 (421)
307 PF11116 DUF2624: Protein of u 89.4 1.1 2.4E-05 37.6 5.9 56 459-514 2-62 (85)
308 COG3898 Uncharacterized membra 88.9 14 0.00031 39.6 15.0 113 67-194 259-374 (531)
309 PF08424 NRDE-2: NRDE-2, neces 87.6 6.7 0.00015 41.1 12.0 90 92-190 6-107 (321)
310 cd02682 MIT_AAA_Arch MIT: doma 87.5 3.8 8.3E-05 33.6 7.9 30 71-100 6-35 (75)
311 PF10516 SHNi-TPR: SHNi-TPR; 87.5 0.84 1.8E-05 32.4 3.5 28 116-143 3-30 (38)
312 PF06957 COPI_C: Coatomer (COP 87.2 4 8.6E-05 44.4 10.1 119 67-185 200-337 (422)
313 KOG4814 Uncharacterized conser 87.0 3.3 7.2E-05 46.7 9.4 71 114-184 354-430 (872)
314 COG5191 Uncharacterized conser 86.9 1.2 2.5E-05 46.2 5.5 87 94-189 96-183 (435)
315 PF11207 DUF2989: Protein of u 86.5 5.2 0.00011 39.1 9.5 71 58-134 128-198 (203)
316 TIGR02561 HrpB1_HrpK type III 86.5 25 0.00055 32.8 13.5 110 71-191 10-119 (153)
317 KOG2047 mRNA splicing factor [ 86.5 28 0.0006 39.7 16.1 120 66-186 420-551 (835)
318 KOG0530 Protein farnesyltransf 86.3 25 0.00054 36.0 14.3 89 87-184 94-183 (318)
319 PRK15180 Vi polysaccharide bio 86.2 2 4.3E-05 46.9 7.1 89 81-178 299-387 (831)
320 KOG0529 Protein geranylgeranyl 86.2 21 0.00045 38.6 14.5 118 79-198 36-161 (421)
321 PF09986 DUF2225: Uncharacteri 86.0 4.5 9.8E-05 40.0 9.1 83 71-156 125-208 (214)
322 PHA02537 M terminase endonucle 86.0 13 0.00029 37.2 12.3 115 81-196 93-225 (230)
323 PF10373 EST1_DNA_bind: Est1 D 85.9 6.6 0.00014 39.4 10.6 62 90-160 1-62 (278)
324 KOG1550 Extracellular protein 85.9 12 0.00027 42.2 13.8 111 71-194 244-372 (552)
325 KOG3617 WD40 and TPR repeat-co 85.6 15 0.00032 42.9 13.7 95 71-176 826-940 (1416)
326 PF04910 Tcf25: Transcriptiona 84.6 9.1 0.0002 40.9 11.3 103 70-180 102-225 (360)
327 PF10373 EST1_DNA_bind: Est1 D 84.0 3.3 7.2E-05 41.6 7.4 62 133-194 1-62 (278)
328 smart00727 STI1 Heat shock cha 83.9 2 4.3E-05 30.6 4.1 31 451-483 3-33 (41)
329 PRK15180 Vi polysaccharide bio 83.6 7.2 0.00016 42.7 9.8 53 127-179 302-354 (831)
330 COG3629 DnrI DNA-binding trans 83.6 7.4 0.00016 40.1 9.6 67 68-143 150-216 (280)
331 PF07721 TPR_4: Tetratricopept 83.5 1.4 3E-05 28.2 2.8 23 150-172 3-25 (26)
332 TIGR02561 HrpB1_HrpK type III 83.5 12 0.00026 34.9 10.0 82 116-197 12-93 (153)
333 COG3914 Spy Predicted O-linked 83.3 13 0.00029 41.7 11.9 94 88-188 48-142 (620)
334 PF08424 NRDE-2: NRDE-2, neces 83.2 26 0.00057 36.6 13.9 82 87-177 47-131 (321)
335 PF10255 Paf67: RNA polymerase 83.1 4.1 8.8E-05 44.1 7.9 113 77-190 128-243 (404)
336 PF03672 UPF0154: Uncharacteri 83.0 2.8 6.1E-05 33.3 4.8 41 462-502 19-62 (64)
337 KOG1310 WD40 repeat protein [G 82.8 3.2 7E-05 45.8 6.9 74 128-201 388-464 (758)
338 COG5346 Predicted membrane pro 82.5 3.2 6.9E-05 37.0 5.5 59 498-556 45-106 (136)
339 COG4649 Uncharacterized protei 82.0 51 0.0011 31.8 16.4 101 71-176 94-195 (221)
340 PF10345 Cohesin_load: Cohesin 81.9 16 0.00034 41.8 12.6 99 74-172 304-428 (608)
341 PF11817 Foie-gras_1: Foie gra 81.9 12 0.00026 37.6 10.4 83 88-173 155-243 (247)
342 PF10602 RPN7: 26S proteasome 81.7 18 0.00039 34.6 11.0 66 113-178 35-103 (177)
343 PF07720 TPR_3: Tetratricopept 81.6 4.6 0.0001 28.2 5.1 29 117-145 4-34 (36)
344 PF07720 TPR_3: Tetratricopept 80.0 5.2 0.00011 28.0 4.9 33 149-181 2-36 (36)
345 cd02683 MIT_1 MIT: domain cont 79.5 16 0.00035 30.0 8.5 30 71-100 6-35 (77)
346 KOG2581 26S proteasome regulat 78.7 35 0.00076 36.9 12.6 110 70-182 168-281 (493)
347 cd02682 MIT_AAA_Arch MIT: doma 78.2 19 0.00042 29.6 8.4 24 117-140 9-32 (75)
348 COG0790 FOG: TPR repeat, SEL1 76.8 62 0.0013 32.7 14.0 93 74-180 151-269 (292)
349 KOG0546 HSP90 co-chaperone CPR 76.2 2.2 4.7E-05 45.0 3.0 85 71-164 275-359 (372)
350 PF04212 MIT: MIT (microtubule 76.2 6.5 0.00014 31.3 5.2 32 69-100 3-34 (69)
351 PF07721 TPR_4: Tetratricopept 76.0 3.8 8.2E-05 26.1 3.0 23 116-138 3-25 (26)
352 PF10579 Rapsyn_N: Rapsyn N-te 75.9 21 0.00045 29.7 8.0 60 118-177 10-72 (80)
353 KOG0985 Vesicle coat protein c 74.7 1.4E+02 0.0031 36.1 16.9 58 115-177 1105-1162(1666)
354 KOG2396 HAT (Half-A-TPR) repea 74.1 30 0.00066 38.3 11.0 73 70-151 104-177 (568)
355 PF10952 DUF2753: Protein of u 74.0 21 0.00046 32.3 8.1 110 73-189 3-123 (140)
356 PF09670 Cas_Cas02710: CRISPR- 72.8 60 0.0013 34.9 13.1 66 71-143 131-198 (379)
357 PF15015 NYD-SP12_N: Spermatog 72.5 25 0.00054 38.2 9.7 49 152-200 232-280 (569)
358 KOG2041 WD40 repeat protein [G 72.3 53 0.0011 37.9 12.5 81 70-171 795-875 (1189)
359 COG4455 ImpE Protein of avirul 72.1 95 0.002 31.1 12.9 63 77-148 7-69 (273)
360 PRK01844 hypothetical protein; 71.5 11 0.00024 30.6 5.3 40 462-501 26-68 (72)
361 smart00727 STI1 Heat shock cha 71.2 5.8 0.00013 28.1 3.4 24 353-378 10-33 (41)
362 PRK11619 lytic murein transgly 71.1 1.1E+02 0.0023 35.5 15.4 58 119-176 317-374 (644)
363 cd02656 MIT MIT: domain contai 71.0 15 0.00033 29.6 6.3 32 70-101 5-36 (75)
364 PF10255 Paf67: RNA polymerase 71.0 6.1 0.00013 42.8 5.0 61 116-176 124-192 (404)
365 PF14863 Alkyl_sulf_dimr: Alky 70.9 12 0.00026 34.5 6.3 46 118-163 74-119 (141)
366 cd02681 MIT_calpain7_1 MIT: do 70.6 9.4 0.0002 31.4 4.9 31 70-100 5-35 (76)
367 PRK00523 hypothetical protein; 70.6 13 0.00029 30.1 5.6 40 462-501 27-69 (72)
368 PF11207 DUF2989: Protein of u 70.5 35 0.00075 33.5 9.5 74 88-170 123-200 (203)
369 smart00745 MIT Microtubule Int 70.2 17 0.00038 29.3 6.5 33 69-101 6-38 (77)
370 COG4941 Predicted RNA polymera 69.6 55 0.0012 34.6 11.2 74 116-189 331-406 (415)
371 KOG3616 Selective LIM binding 69.3 79 0.0017 36.8 13.0 76 60-140 650-732 (1636)
372 COG4455 ImpE Protein of avirul 69.0 22 0.00048 35.4 7.8 68 122-189 9-76 (273)
373 cd02678 MIT_VPS4 MIT: domain c 68.9 15 0.00032 29.9 5.8 33 69-101 4-36 (75)
374 cd02680 MIT_calpain7_2 MIT: do 68.6 8.9 0.00019 31.5 4.3 35 69-103 4-38 (75)
375 TIGR03504 FimV_Cterm FimV C-te 68.3 18 0.00039 26.5 5.4 24 152-175 3-26 (44)
376 PF14863 Alkyl_sulf_dimr: Alky 68.3 25 0.00055 32.4 7.8 55 146-200 68-122 (141)
377 PF04781 DUF627: Protein of un 67.3 23 0.00049 31.4 6.8 69 120-188 2-84 (111)
378 KOG0985 Vesicle coat protein c 67.1 33 0.00072 41.1 9.9 108 71-195 1194-1326(1666)
379 cd02684 MIT_2 MIT: domain cont 66.9 17 0.00037 29.7 5.7 33 69-101 4-36 (75)
380 PF07079 DUF1347: Protein of u 66.8 25 0.00055 38.5 8.4 59 71-139 462-520 (549)
381 KOG1924 RhoA GTPase effector D 66.2 2.7E+02 0.0059 32.8 21.7 28 77-104 371-398 (1102)
382 COG2909 MalT ATP-dependent tra 65.8 2.2E+02 0.0049 33.8 16.2 99 71-173 458-564 (894)
383 KOG1538 Uncharacterized conser 65.1 34 0.00074 39.0 9.2 52 122-176 781-832 (1081)
384 KOG1258 mRNA processing protei 64.8 1.3E+02 0.0028 34.1 13.7 119 70-197 296-415 (577)
385 PF08311 Mad3_BUB1_I: Mad3/BUB 64.7 49 0.0011 29.7 8.8 86 84-175 39-126 (126)
386 PRK13184 pknD serine/threonine 64.5 80 0.0017 38.1 12.8 98 73-182 521-625 (932)
387 KOG1839 Uncharacterized protei 64.5 36 0.00079 41.6 9.9 111 67-178 969-1087(1236)
388 KOG0292 Vesicle coat complex C 64.4 88 0.0019 37.1 12.4 121 67-187 987-1123(1202)
389 PF04212 MIT: MIT (microtubule 64.2 58 0.0013 25.7 8.3 24 118-141 9-32 (69)
390 KOG1920 IkappaB kinase complex 63.8 3.1E+02 0.0067 33.8 17.1 23 119-141 957-979 (1265)
391 cd02677 MIT_SNX15 MIT: domain 63.5 42 0.00091 27.5 7.4 33 69-101 4-36 (75)
392 TIGR02710 CRISPR-associated pr 61.6 1.3E+02 0.0029 32.4 12.8 63 73-139 132-196 (380)
393 COG5191 Uncharacterized conser 61.3 8.7 0.00019 40.0 3.6 74 70-152 106-180 (435)
394 PF04190 DUF410: Protein of un 60.9 1.3E+02 0.0029 30.4 12.3 72 66-143 85-170 (260)
395 KOG3783 Uncharacterized conser 60.2 66 0.0014 36.0 10.3 81 66-154 262-342 (546)
396 PF11846 DUF3366: Domain of un 60.2 46 0.00099 31.8 8.4 51 130-181 127-177 (193)
397 TIGR03504 FimV_Cterm FimV C-te 60.2 15 0.00033 26.9 3.7 26 118-143 3-28 (44)
398 KOG0687 26S proteasome regulat 59.9 2.4E+02 0.0052 30.0 14.6 105 69-176 102-209 (393)
399 smart00386 HAT HAT (Half-A-TPR 59.4 26 0.00056 22.2 4.6 29 162-190 1-29 (33)
400 cd02683 MIT_1 MIT: domain cont 59.2 72 0.0016 26.2 8.1 22 120-141 12-33 (77)
401 COG3947 Response regulator con 58.7 27 0.00058 36.2 6.5 59 73-140 281-339 (361)
402 KOG2114 Vacuolar assembly/sort 58.7 56 0.0012 38.4 9.7 66 455-536 702-770 (933)
403 PF12739 TRAPPC-Trs85: ER-Golg 58.6 1.4E+02 0.0029 32.5 12.6 103 72-177 209-329 (414)
404 KOG2561 Adaptor protein NUB1, 58.2 39 0.00084 36.9 7.8 107 71-177 163-296 (568)
405 KOG3807 Predicted membrane pro 57.8 1.4E+02 0.003 31.7 11.5 31 115-145 276-306 (556)
406 KOG1463 26S proteasome regulat 57.6 59 0.0013 34.5 8.9 115 77-197 215-333 (411)
407 PF01004 Flavi_M: Flavivirus e 57.4 20 0.00044 29.4 4.4 25 521-545 25-49 (75)
408 PF09797 NatB_MDM20: N-acetylt 57.0 1.3E+02 0.0029 31.8 12.1 88 87-174 151-243 (365)
409 KOG1839 Uncharacterized protei 56.4 40 0.00087 41.3 8.5 125 69-195 930-1070(1236)
410 KOG0010 Ubiquitin-like protein 56.3 1.5E+02 0.0032 32.9 12.0 25 452-479 347-371 (493)
411 KOG2581 26S proteasome regulat 56.3 2.4E+02 0.0051 30.8 13.2 110 69-184 245-356 (493)
412 KOG2422 Uncharacterized conser 55.4 1.3E+02 0.0028 34.2 11.4 103 71-174 284-404 (665)
413 cd02681 MIT_calpain7_1 MIT: do 54.9 21 0.00046 29.3 4.3 23 119-141 11-33 (76)
414 PF09205 DUF1955: Domain of un 54.9 91 0.002 28.9 8.5 61 117-177 88-149 (161)
415 PF11351 DUF3154: Protein of u 54.3 30 0.00066 31.1 5.6 58 488-548 12-75 (123)
416 KOG2911 Uncharacterized conser 54.2 3E+02 0.0064 30.1 13.6 47 52-98 237-283 (439)
417 PF03745 DUF309: Domain of unk 53.4 85 0.0018 24.7 7.3 60 75-137 3-62 (62)
418 TIGR03798 ocin_TIGR03798 bacte 52.1 68 0.0015 25.1 6.6 54 452-511 8-61 (64)
419 smart00745 MIT Microtubule Int 51.7 1E+02 0.0022 24.7 7.9 21 121-141 15-35 (77)
420 KOG0860 Synaptobrevin/VAMP-lik 50.9 41 0.0009 29.9 5.6 35 515-549 73-107 (116)
421 KOG1464 COP9 signalosome, subu 50.8 1.1E+02 0.0023 31.7 9.2 106 70-178 64-175 (440)
422 PRK10132 hypothetical protein; 50.2 85 0.0018 27.6 7.5 65 489-554 39-103 (108)
423 KOG4459 Membrane-associated pr 50.2 50 0.0011 36.1 7.2 124 71-199 31-184 (471)
424 PF09125 COX2-transmemb: Cytoc 50.0 19 0.00041 25.2 2.6 17 535-551 14-30 (38)
425 PF04053 Coatomer_WDAD: Coatom 49.7 81 0.0017 34.8 9.0 82 70-173 346-427 (443)
426 PF07023 DUF1315: Protein of u 49.6 31 0.00067 29.5 4.5 35 465-499 1-42 (93)
427 PF08626 TRAPPC9-Trs120: Trans 49.0 1.9E+02 0.0041 36.1 13.0 128 67-197 238-460 (1185)
428 COG5600 Transcription-associat 48.7 1.2E+02 0.0025 32.7 9.4 97 84-180 143-252 (413)
429 PF04190 DUF410: Protein of un 48.5 2.7E+02 0.0058 28.3 12.1 101 68-172 7-114 (260)
430 cd02679 MIT_spastin MIT: domai 48.3 37 0.0008 28.2 4.7 34 68-101 5-38 (79)
431 COG1747 Uncharacterized N-term 48.0 2E+02 0.0043 32.4 11.3 81 115-197 67-147 (711)
432 PF00244 14-3-3: 14-3-3 protei 47.5 45 0.00098 33.4 6.2 53 88-141 143-196 (236)
433 KOG3783 Uncharacterized conser 46.8 3.5E+02 0.0076 30.5 13.1 78 68-147 446-524 (546)
434 COG5091 SGT1 Suppressor of G2 46.7 62 0.0013 33.2 6.8 101 80-181 4-112 (368)
435 KOG0739 AAA+-type ATPase [Post 46.3 85 0.0018 32.9 7.8 30 71-100 10-39 (439)
436 KOG2422 Uncharacterized conser 45.4 1.3E+02 0.0029 34.0 9.7 96 77-180 348-451 (665)
437 PF13226 DUF4034: Domain of un 45.0 1.8E+02 0.0039 30.0 10.1 116 77-196 6-147 (277)
438 cd02678 MIT_VPS4 MIT: domain c 44.5 1.7E+02 0.0036 23.6 8.1 16 126-141 18-33 (75)
439 KOG3616 Selective LIM binding 44.3 2.9E+02 0.0063 32.5 12.1 23 149-171 825-847 (1636)
440 KOG1464 COP9 signalosome, subu 44.3 3.4E+02 0.0075 28.1 11.6 56 83-143 39-94 (440)
441 PF15469 Sec5: Exocyst complex 44.2 61 0.0013 30.8 6.3 25 80-104 95-119 (182)
442 PF05053 Menin: Menin; InterP 44.2 1.7E+02 0.0037 33.1 10.3 91 85-194 274-370 (618)
443 COG3014 Uncharacterized protei 43.8 3.4E+02 0.0073 29.1 11.8 42 151-193 197-238 (449)
444 KOG4563 Cell cycle-regulated h 43.8 62 0.0013 34.5 6.6 67 67-134 37-103 (400)
445 KOG3915 Transcription regulato 43.6 86 0.0019 34.3 7.6 30 326-355 66-97 (641)
446 cd02680 MIT_calpain7_2 MIT: do 43.6 43 0.00094 27.5 4.4 18 160-177 18-35 (75)
447 COG2015 Alkyl sulfatase and re 43.2 1.9E+02 0.0042 32.2 10.2 59 151-209 455-513 (655)
448 smart00386 HAT HAT (Half-A-TPR 43.1 54 0.0012 20.6 4.2 29 128-156 1-29 (33)
449 COG4649 Uncharacterized protei 41.6 3.2E+02 0.007 26.6 10.4 122 80-208 67-193 (221)
450 COG1747 Uncharacterized N-term 41.3 5.8E+02 0.012 28.9 15.9 38 123-160 214-251 (711)
451 KOG3540 Beta amyloid precursor 40.0 5.7E+02 0.012 28.5 13.9 106 91-198 291-403 (615)
452 KOG3024 Uncharacterized conser 39.0 3.3E+02 0.0071 28.3 10.6 106 67-172 22-151 (312)
453 KOG2041 WD40 repeat protein [G 38.8 1.7E+02 0.0037 34.1 9.3 69 110-190 792-860 (1189)
454 PF01535 PPR: PPR repeat; Int 36.9 52 0.0011 20.6 3.2 27 116-142 2-28 (31)
455 PF04719 TAFII28: hTAFII28-lik 36.0 1.1E+02 0.0023 26.2 5.7 36 497-534 2-38 (90)
456 KOG0276 Vesicle coat complex C 36.0 4.4E+02 0.0096 30.3 11.8 33 68-100 663-695 (794)
457 PF09205 DUF1955: Domain of un 35.9 1.2E+02 0.0026 28.1 6.3 30 114-143 120-149 (161)
458 PF01239 PPTA: Protein prenylt 35.8 98 0.0021 20.2 4.5 28 133-160 2-29 (31)
459 KOG1914 mRNA cleavage and poly 35.5 1.4E+02 0.003 33.7 7.9 82 95-187 10-91 (656)
460 cd02433 Nodulin-21_like_2 Nodu 35.4 4E+02 0.0088 26.7 10.8 46 468-513 91-137 (234)
461 PF04053 Coatomer_WDAD: Coatom 34.4 3.8E+02 0.0082 29.6 11.3 27 115-141 348-374 (443)
462 PF07163 Pex26: Pex26 protein; 34.4 5.5E+02 0.012 26.7 12.0 110 72-182 36-151 (309)
463 KOG0890 Protein kinase of the 34.4 4.2E+02 0.0092 35.2 12.6 112 67-189 1666-1796(2382)
464 PF04348 LppC: LppC putative l 34.0 13 0.00029 41.8 0.0 102 70-179 23-129 (536)
465 PRK10869 recombination and rep 34.0 7.4E+02 0.016 28.1 16.0 69 130-198 246-315 (553)
466 PF12854 PPR_1: PPR repeat 33.9 95 0.0021 20.9 4.3 24 149-172 8-31 (34)
467 cd08977 SusD starch binding ou 33.7 2.8E+02 0.0061 29.0 10.0 48 130-177 141-210 (359)
468 KOG1920 IkappaB kinase complex 33.6 3.8E+02 0.0082 33.1 11.5 20 155-174 959-978 (1265)
469 cd02656 MIT MIT: domain contai 33.3 1E+02 0.0022 24.7 5.1 23 119-141 11-33 (75)
470 TIGR00756 PPR pentatricopeptid 33.3 88 0.0019 19.8 4.0 26 117-142 3-28 (35)
471 PF12854 PPR_1: PPR repeat 33.1 85 0.0019 21.1 3.9 25 115-139 8-32 (34)
472 PRK11103 PTS system mannose-sp 33.1 42 0.00091 34.7 3.4 28 531-558 253-282 (282)
473 COG0497 RecN ATPase involved i 32.2 8.1E+02 0.018 27.9 15.0 66 133-198 250-316 (557)
474 KOG3540 Beta amyloid precursor 32.2 7.5E+02 0.016 27.6 15.0 58 86-150 327-384 (615)
475 PF10858 DUF2659: Protein of u 32.1 4.7E+02 0.01 25.2 10.5 98 74-178 96-201 (220)
476 PF02064 MAS20: MAS20 protein 32.1 1E+02 0.0022 27.8 5.2 37 153-189 68-104 (121)
477 cd02679 MIT_spastin MIT: domai 31.6 79 0.0017 26.2 4.2 23 119-141 13-35 (79)
478 PF08113 CoxIIa: Cytochrome c 31.1 68 0.0015 22.1 2.9 21 535-555 4-25 (34)
479 KOG2709 Uncharacterized conser 31.1 1E+02 0.0023 33.4 5.9 105 86-215 11-120 (560)
480 PF08372 PRT_C: Plant phosphor 31.0 1.2E+02 0.0027 28.5 5.8 44 507-550 60-110 (156)
481 PF11137 DUF2909: Protein of u 31.0 43 0.00094 26.6 2.4 30 526-557 31-60 (63)
482 COG3763 Uncharacterized protei 31.0 1.8E+02 0.0038 23.7 5.8 33 461-493 26-60 (71)
483 cd08977 SusD starch binding ou 30.9 1.3E+02 0.0029 31.4 7.0 57 87-143 141-210 (359)
484 PF07219 HemY_N: HemY protein 30.8 2.3E+02 0.0049 24.6 7.2 34 67-100 55-88 (108)
485 KOG2168 Cullins [Cell cycle co 30.6 4.1E+02 0.009 31.6 11.0 103 71-183 622-741 (835)
486 PF07219 HemY_N: HemY protein 29.5 2.6E+02 0.0057 24.2 7.4 47 116-162 61-107 (108)
487 PF00957 Synaptobrevin: Synapt 28.8 1.5E+02 0.0033 24.5 5.6 33 517-549 49-81 (89)
488 KOG0889 Histone acetyltransfer 28.5 8.2E+02 0.018 34.1 14.0 137 53-196 2752-2901(3550)
489 KOG1914 mRNA cleavage and poly 28.2 9.4E+02 0.02 27.4 12.9 72 123-194 410-484 (656)
490 PF14842 FliG_N: FliG N-termin 27.8 1.4E+02 0.0031 25.9 5.4 59 463-534 21-87 (108)
491 cd09240 BRO1_Alix Protein-inte 27.5 7.5E+02 0.016 26.1 13.5 28 149-176 256-283 (346)
492 COG3716 ManZ Phosphotransferas 26.9 62 0.0013 33.0 3.3 54 491-557 214-269 (269)
493 KOG0780 Signal recognition par 26.7 7.6E+02 0.016 27.1 11.3 21 296-316 367-387 (483)
494 KOG0810 SNARE protein Syntaxin 26.5 94 0.002 32.4 4.7 53 506-558 234-291 (297)
495 PRK10404 hypothetical protein; 26.5 4.3E+02 0.0093 22.9 9.5 65 489-554 32-97 (101)
496 smart00671 SEL1 Sel1-like repe 26.5 1.4E+02 0.0031 19.4 4.2 27 116-142 3-33 (36)
497 KOG3807 Predicted membrane pro 26.4 8.2E+02 0.018 26.2 17.1 28 152-179 279-306 (556)
498 KOG4563 Cell cycle-regulated h 26.3 1E+02 0.0022 33.0 4.8 58 116-173 43-108 (400)
499 PF13812 PPR_3: Pentatricopept 26.1 1.6E+02 0.0034 18.8 4.3 27 116-142 3-29 (34)
500 KOG0890 Protein kinase of the 26.1 5.1E+02 0.011 34.5 11.4 88 87-178 1645-1732(2382)
No 1
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.86 E-value=2.2e-20 Score=186.57 Aligned_cols=122 Identities=28% Similarity=0.367 Sum_probs=117.3
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008613 67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 146 (559)
Q Consensus 67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~ 146 (559)
....++.+|.+||.+.+.++|.+||.+|++||+++|.++- .|+|||++|.++|.|+.||++|+.+|.+||.
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAV---------yycNRAAAy~~Lg~~~~AVkDce~Al~iDp~ 147 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAV---------YYCNRAAAYSKLGEYEDAVKDCESALSIDPH 147 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcch---------HHHHHHHHHHHhcchHHHHHHHHHHHhcChH
Confidence 5667999999999999999999999999999999999976 8999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 008613 147 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 197 (559)
Q Consensus 147 ~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~ 197 (559)
+.++|.|+|.+|+.+|+|++|+..|+++|+++|+++..+..|+.++..+++
T Consensus 148 yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 148 YSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999888853
No 2
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=2e-17 Score=171.46 Aligned_cols=147 Identities=33% Similarity=0.491 Sum_probs=129.6
Q ss_pred HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCC------chhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008613 66 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS------SEGRTLLLACSLNSMSCYLKTKQYDECIKVGSE 139 (559)
Q Consensus 66 ~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~------~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~ 139 (559)
..+..+...+..||.||+.|+|..|+..|.+|+.....+.. .....++..|+.|++.||+++++|.+|+..|++
T Consensus 203 e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~k 282 (397)
T KOG0543|consen 203 ERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNK 282 (397)
T ss_pred HHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHH
Confidence 36777999999999999999999999999999998875432 135678889999999999999999999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcC-CCCCccchhhhh
Q 008613 140 VLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG-HHGPRGLLIEEI 212 (559)
Q Consensus 140 AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~-~~~~~~~~i~e~ 212 (559)
+|+++|+|++++||||.||..+++|+.|+.+|+++++++|+|..+...|..+..+++++.. ++.-|...+...
T Consensus 283 vLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 283 VLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKL 356 (397)
T ss_pred HHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999999999999988887754 344455544333
No 3
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.71 E-value=1.2e-16 Score=151.02 Aligned_cols=127 Identities=24% Similarity=0.341 Sum_probs=117.3
Q ss_pred HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008613 66 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA 145 (559)
Q Consensus 66 ~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP 145 (559)
..+..+..++..||.+|+.|+|.+|...|.+||.++|..+. .++..||.|+|.|+++++.|+.||.+|+++|+|+|
T Consensus 90 k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~----e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p 165 (271)
T KOG4234|consen 90 KAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST----EERSILYSNRAAALIKLRKWESAIEDCSKAIELNP 165 (271)
T ss_pred HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH----HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc
Confidence 45677999999999999999999999999999999998864 66788999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008613 146 KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM 196 (559)
Q Consensus 146 ~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~ 196 (559)
.+.+++.||+.+|..+.+|++|+.||++.++++|....++..+.++-..+.
T Consensus 166 ty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ 216 (271)
T KOG4234|consen 166 TYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKIN 216 (271)
T ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHH
Confidence 999999999999999999999999999999999998888887777655554
No 4
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.62 E-value=1.3e-15 Score=162.92 Aligned_cols=171 Identities=17% Similarity=0.121 Sum_probs=151.7
Q ss_pred HHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 008613 65 NYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD 144 (559)
Q Consensus 65 ~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ld 144 (559)
...+.-+.++.++||+|-..+.|++|+.+|.+|+.+.|.+.. ++.|+|.+|+++|..+-||..|+++|+++
T Consensus 246 kldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~---------a~gNla~iYyeqG~ldlAI~~Ykral~~~ 316 (966)
T KOG4626|consen 246 KLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAV---------AHGNLACIYYEQGLLDLAIDTYKRALELQ 316 (966)
T ss_pred cCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchh---------hccceEEEEeccccHHHHHHHHHHHHhcC
Confidence 345556889999999999999999999999999999998865 99999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchhhhhchhhhccCCCCC
Q 008613 145 AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIEEITEEVGAVSSGSH 224 (559)
Q Consensus 145 P~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i~e~~e~~~~~~~~~~ 224 (559)
|+.+.+|.++|.++..+|+..||+.+|.++|.++|+++++..+|+.++...+..+.+..-|++++ ++.++++++..+..
T Consensus 317 P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al-~v~p~~aaa~nNLa 395 (966)
T KOG4626|consen 317 PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKAL-EVFPEFAAAHNNLA 395 (966)
T ss_pred CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHH-hhChhhhhhhhhHH
Confidence 99999999999999999999999999999999999999999999999999998888888888877 78888877765422
Q ss_pred CCCchhhhhhhcCCCCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHHHH
Q 008613 225 RSSGTEYLAREKADPSKSEHSANGRGSSTKPEFLPDLKDDPESIRSFQNFIS 276 (559)
Q Consensus 225 ~~s~~~~~~~e~~~s~~~~~~~~~~~~~~~~~~l~~l~~~PEai~~~~~~i~ 276 (559)
..+...+++-+++.-|+..|+
T Consensus 396 -------------------------------~i~kqqgnl~~Ai~~Ykealr 416 (966)
T KOG4626|consen 396 -------------------------------SIYKQQGNLDDAIMCYKEALR 416 (966)
T ss_pred -------------------------------HHHHhcccHHHHHHHHHHHHh
Confidence 123334667888888888887
No 5
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=3.2e-15 Score=145.28 Aligned_cols=161 Identities=28% Similarity=0.368 Sum_probs=139.0
Q ss_pred HHHHHHHHHHhhCCChHHHHHHHHHHHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008613 20 PEDLKCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKK 99 (559)
Q Consensus 20 pedl~~a~e~l~~~~pee~~~~~~~~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~ 99 (559)
|.++.+.+++++...|+++....| +++.++ +......+..+||.+|+.|+|.+|+..|..||.
T Consensus 144 PqpL~FviellqVe~P~qYq~e~W---qlsdde--------------Kmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~ 206 (329)
T KOG0545|consen 144 PQPLVFVIELLQVEAPSQYQRETW---QLSDDE--------------KMKAVPVLHQEGNRLFKLGRYKEASSKYREAII 206 (329)
T ss_pred CCceEeehhhhhccCchhhccccc---cCCchH--------------hhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHH
Confidence 566788999999999999999888 667777 677799999999999999999999999999997
Q ss_pred hcCC--------CCC-chhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008613 100 NLQG--------IHS-SEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSD 170 (559)
Q Consensus 100 l~p~--------~~~-~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~d 170 (559)
+..+ .+. .+.......++.|.++|++..++|-++++.|+.+|+.+|+|+++||+||.|+...-+..+|..|
T Consensus 207 ~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D 286 (329)
T KOG0545|consen 207 CLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKAD 286 (329)
T ss_pred HHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHH
Confidence 6532 222 1456677889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCH-HHHHHHHHHHHHHHh
Q 008613 171 LSNAHEVSPDDG-TIADVLRDAKEILMK 197 (559)
Q Consensus 171 lekAl~l~P~~~-~a~~~L~~a~~~l~~ 197 (559)
|.++|+++|.-. .+...|..+..+...
T Consensus 287 ~~~vL~ldpslasvVsrElr~le~r~~e 314 (329)
T KOG0545|consen 287 LQKVLELDPSLASVVSRELRLLENRMAE 314 (329)
T ss_pred HHHHHhcChhhHHHHHHHHHHHHHHHHH
Confidence 999999999753 455666666666543
No 6
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.60 E-value=3.1e-14 Score=131.62 Aligned_cols=114 Identities=18% Similarity=0.258 Sum_probs=108.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008613 74 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYR 153 (559)
Q Consensus 74 lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~ 153 (559)
+...|..++..|+|++|+.+|.+++.++|.+.. +|+++|.++..+|+|++|+..|.++++++|+++.++++
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~---------a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~ 97 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWR---------AHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQ 97 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH---------HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 445799999999999999999999999999866 99999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008613 154 RGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM 196 (559)
Q Consensus 154 rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~ 196 (559)
+|.+|..+|++++|+..|++++.++|+++..+..++.++..+.
T Consensus 98 lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 98 TGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888877764
No 7
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.5e-14 Score=153.74 Aligned_cols=121 Identities=25% Similarity=0.394 Sum_probs=115.3
Q ss_pred HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008613 66 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA 145 (559)
Q Consensus 66 ~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP 145 (559)
..+..+...+..|+.+|+.|+|..|+.+|+++|..+|.++. +|.|||.||.+++.|..|+.+|..+|+++|
T Consensus 353 ~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~---------lYsNRAac~~kL~~~~~aL~Da~~~ieL~p 423 (539)
T KOG0548|consen 353 INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR---------LYSNRAACYLKLGEYPEALKDAKKCIELDP 423 (539)
T ss_pred hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH---------HHHHHHHHHHHHhhHHHHHHHHHHHHhcCc
Confidence 46667889999999999999999999999999999999876 999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008613 146 KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 195 (559)
Q Consensus 146 ~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l 195 (559)
++.++|+|.|.++..+.+|+.|.+.|+++++++|++.++...+.++...+
T Consensus 424 ~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 424 NFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999998887776
No 8
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.4e-14 Score=149.76 Aligned_cols=129 Identities=24% Similarity=0.266 Sum_probs=119.8
Q ss_pred HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008613 66 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA 145 (559)
Q Consensus 66 ~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP 145 (559)
..++..+.++..||.+|+.|+|.+|.++|+++|.++|.+.. ..+.||.|||.++.++|+.++||.+|+.+++|||
T Consensus 244 ~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~-----~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~ 318 (486)
T KOG0550|consen 244 MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKK-----TNAKLYGNRALVNIRLGRLREAISDCNEALKIDS 318 (486)
T ss_pred hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccc-----hhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH
Confidence 46778999999999999999999999999999999998643 4678999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcC
Q 008613 146 KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG 200 (559)
Q Consensus 146 ~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~ 200 (559)
.+.++|.+||.||..+++|++|++||+++.++.-+ .++...+.+++..|++.++
T Consensus 319 syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkSkR 372 (486)
T KOG0550|consen 319 SYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKSKR 372 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999866 7889999999999987654
No 9
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=2.1e-14 Score=150.83 Aligned_cols=121 Identities=21% Similarity=0.332 Sum_probs=105.3
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008613 67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 146 (559)
Q Consensus 67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~ 146 (559)
..+.+..++.+||.+|+.|+|++||++|++||.++|+.|- .|.||+.||..+|+|++.+++|+++|+++|+
T Consensus 111 ~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epi---------FYsNraAcY~~lgd~~~Vied~TkALEl~P~ 181 (606)
T KOG0547|consen 111 RLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPI---------FYSNRAACYESLGDWEKVIEDCTKALELNPD 181 (606)
T ss_pred HHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCch---------hhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH
Confidence 4566899999999999999999999999999999999876 9999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHH
Q 008613 147 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS-PDDGTIADVLRDAKEILM 196 (559)
Q Consensus 147 ~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~-P~~~~a~~~L~~a~~~l~ 196 (559)
++++|+||+.+|..+|++++|+.|..-.+-+. -++..+.-.+.++.+.++
T Consensus 182 Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a 232 (606)
T KOG0547|consen 182 YVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQA 232 (606)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHH
Confidence 99999999999999999999999998655443 245555555555554443
No 10
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.56 E-value=1.5e-14 Score=146.28 Aligned_cols=118 Identities=24% Similarity=0.316 Sum_probs=108.6
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008613 67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 146 (559)
Q Consensus 67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~ 146 (559)
.+.....++++||.||++|+|++||++|.+++.+.|.++- .|.|||.+|+++++|..|..+|+.|+.||-.
T Consensus 93 LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV---------~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~ 163 (536)
T KOG4648|consen 93 LLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPV---------YHINRALAYLKQKSFAQAEEDCEAAIALDKL 163 (536)
T ss_pred HHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCcc---------chhhHHHHHHHHHHHHHHHHhHHHHHHhhHH
Confidence 3555667899999999999999999999999999998876 8999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008613 147 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE 193 (559)
Q Consensus 147 ~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~ 193 (559)
+.++|.||+.+...||...||.+||+.+|.+.|++.+....+..+..
T Consensus 164 Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S 210 (536)
T KOG4648|consen 164 YVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINS 210 (536)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence 99999999999999999999999999999999998777666665543
No 11
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.55 E-value=8.4e-14 Score=147.40 Aligned_cols=118 Identities=18% Similarity=0.302 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008613 72 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKAL 151 (559)
Q Consensus 72 ~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal 151 (559)
..++.+|+.+|..|+|.+|+.+|.++|+++|.++. +|+++|.||+++|+|++|+.+|+++|.++|+++.+|
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~---------a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~ 73 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAE---------LYADRAQANIKLGNFTEAVADANKAIELDPSLAKAY 73 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHH
Confidence 45788999999999999999999999999998865 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 008613 152 YRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE 198 (559)
Q Consensus 152 ~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~ 198 (559)
+++|.+|..+|+|++|+.+|++++.++|++..+...+..+...+...
T Consensus 74 ~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~~ 120 (356)
T PLN03088 74 LRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEE 120 (356)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999998888654
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.50 E-value=1.5e-13 Score=147.51 Aligned_cols=186 Identities=16% Similarity=0.146 Sum_probs=156.5
Q ss_pred HHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHH
Q 008613 54 ATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDEC 133 (559)
Q Consensus 54 ~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eA 133 (559)
+-+.....+.+...+.-.+++.++||.+-..|+..+|+++|.+||.++|.+++ ..+|+|.+|.+.+.+++|
T Consensus 303 dlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~had---------am~NLgni~~E~~~~e~A 373 (966)
T KOG4626|consen 303 DLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHAD---------AMNNLGNIYREQGKIEEA 373 (966)
T ss_pred HHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHH---------HHHHHHHHHHHhccchHH
Confidence 34445555555556667888999999999999999999999999999999977 899999999999999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchhhhhc
Q 008613 134 IKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIEEIT 213 (559)
Q Consensus 134 i~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i~e~~ 213 (559)
+..|.++++..|+.+.++.++|.+|...|++++|+.+|+.++.+.|...+++.+++...+.+++-.++.+-|.++| .+.
T Consensus 374 ~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI-~~n 452 (966)
T KOG4626|consen 374 TRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAI-QIN 452 (966)
T ss_pred HHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHH-hcC
Confidence 9999999999999999999999999999999999999999999999999999999999999998888888888888 777
Q ss_pred hhhhccCCCCCCCCchhhhhhhcCCCCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHHHHcCCcc
Q 008613 214 EEVGAVSSGSHRSSGTEYLAREKADPSKSEHSANGRGSSTKPEFLPDLKDDPESIRSFQNFISNANPD 281 (559)
Q Consensus 214 e~~~~~~~~~~~~s~~~~~~~e~~~s~~~~~~~~~~~~~~~~~~l~~l~~~PEai~~~~~~i~~~dpe 281 (559)
+.+++++++..+. ...-+.-|++|++|...++ ++|+
T Consensus 453 Pt~AeAhsNLasi-------------------------------~kDsGni~~AI~sY~~aLk-lkPD 488 (966)
T KOG4626|consen 453 PTFAEAHSNLASI-------------------------------YKDSGNIPEAIQSYRTALK-LKPD 488 (966)
T ss_pred cHHHHHHhhHHHH-------------------------------hhccCCcHHHHHHHHHHHc-cCCC
Confidence 8887776652211 0111456899999988887 4554
No 13
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.49 E-value=2.4e-14 Score=145.32 Aligned_cols=242 Identities=18% Similarity=0.146 Sum_probs=160.3
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008613 67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 146 (559)
Q Consensus 67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~ 146 (559)
.+..+...+..+..++..|.+++||+.|+.+|.++|.... +|.+++.+|++++++..||++|..+|+++|+
T Consensus 110 ~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~---------l~~kr~sv~lkl~kp~~airD~d~A~ein~D 180 (377)
T KOG1308|consen 110 MMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAI---------LYAKRASVFLKLKKPNAAIRDCDFAIEINPD 180 (377)
T ss_pred HHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCchhh---------hcccccceeeeccCCchhhhhhhhhhccCcc
Confidence 4556778888999999999999999999999999998755 9999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchhhhhchhhhcc-------
Q 008613 147 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIEEITEEVGAV------- 219 (559)
Q Consensus 147 ~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i~e~~e~~~~~------- 219 (559)
..+.|-.||.++..+|+|++|..||+.+++++- ++.+-..|.++....+..++....+++..++........
T Consensus 181 sa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~-dE~~~a~lKeV~p~a~ki~e~~~k~er~~~e~~~~~r~er~r~~r~ 259 (377)
T KOG1308|consen 181 SAKGYKFRGYAERLLGNWEEAAHDLALACKLDY-DEANSATLKEVFPNAGKIEEHRRKYERAREEREIKERVERVRYARE 259 (377)
T ss_pred cccccchhhHHHHHhhchHHHHHHHHHHHhccc-cHHHHHHHHHhccchhhhhhchhHHHHHHHHhcccccccccccccc
Confidence 999999999999999999999999999999984 345555666665555444443333333332222110000
Q ss_pred CCCCCCCCchhhhhhhcCCCCCCCCCCCCCCCCCCCccccC---CC---C------CHHHHHHHHHHHHcCCcchhhhhc
Q 008613 220 SSGSHRSSGTEYLAREKADPSKSEHSANGRGSSTKPEFLPD---LK---D------DPESIRSFQNFISNANPDSFAALS 287 (559)
Q Consensus 220 ~~~~~~~s~~~~~~~e~~~s~~~~~~~~~~~~~~~~~~l~~---l~---~------~PEai~~~~~~i~~~dpe~la~m~ 287 (559)
+..-.+-++... ..+.+.-.+...++++..++.++..-.. ++ - .|-.+- +.+.+. |||-+++++
T Consensus 260 ~~e~~~~e~~k~-~~~~~~~~~~~g~~p~~M~g~~~~~~~m~~~m~~~~~n~~~~~~p~~~g-i~ki~~--dpev~aAfq 335 (377)
T KOG1308|consen 260 PEEMANPEEFKR-MLKNPQYRQFLGGFPGGMPGSFPGDKRMTDGMKGFDGNSPVKQQPNQIG-ISKILS--DPEVAAAFQ 335 (377)
T ss_pred hhhhcChhhhhh-hhccCCCCcccCCCcccCCCCCCCccccccccccCCCCCccccCCCccc-HhhhcC--chHHHHhhc
Confidence 000000000000 0111112222333333333322222111 10 0 111111 333333 677778887
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 008613 288 GGKAGEISPDMFKAVSIMINKMSPEELQRMIQIAS 322 (559)
Q Consensus 288 ~~~~g~~~pdm~k~as~m~~~mspeel~~m~~~as 322 (559)
.+...-.-+|..+...|||++-+..++-.+++.-+
T Consensus 336 dp~v~aal~d~~~np~n~~kyq~n~kv~~~i~kl~ 370 (377)
T KOG1308|consen 336 DPEVQAALMDVSQNPANMMKYQNNPKVMDVISKLS 370 (377)
T ss_pred ChHHHhhhhhcccChHHHHHhccChHHHHHHHHHH
Confidence 76666667888999999999999988888888644
No 14
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.49 E-value=9.5e-13 Score=118.80 Aligned_cols=122 Identities=19% Similarity=0.293 Sum_probs=110.9
Q ss_pred HHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 008613 65 NYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD 144 (559)
Q Consensus 65 ~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ld 144 (559)
...+.....+...|..++..|+|.+|+..|++++.++|.++. +|+++|.||.+.|+|++|+..|.++++++
T Consensus 11 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~---------~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 11 GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSR---------YWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred cCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334444778889999999999999999999999999888765 99999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008613 145 AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 195 (559)
Q Consensus 145 P~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l 195 (559)
|+++..++.+|.+|...|++++|+..|+++++++|++.........+...+
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 132 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAML 132 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988777766666554
No 15
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=1.6e-13 Score=145.95 Aligned_cols=113 Identities=25% Similarity=0.322 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 150 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka 150 (559)
+..++.+||.+|..|+|+.||.+|+++|.++|.+.- +|.||..||..+++|++|+++..+.++++|+++++
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhv---------lySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kg 72 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHV---------LYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKG 72 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccc---------hhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhH
Confidence 456789999999999999999999999999999765 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008613 151 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAK 192 (559)
Q Consensus 151 l~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~ 192 (559)
|.|+|.++..+|+|++|+..|.+.|+++|+++.....|..+.
T Consensus 73 y~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 73 YSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 999999999999999999999999999999999999998887
No 16
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=2.5e-13 Score=137.23 Aligned_cols=109 Identities=21% Similarity=0.278 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008613 69 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV 148 (559)
Q Consensus 69 ~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ 148 (559)
+.|+.++..||.||+.++|..|+..|+++|...-.+++ +.+.+|.|||+|.+.+|+|..||++|.+++.++|++.
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~d-----lnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~ 153 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPD-----LNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHL 153 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCcc-----HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchh
Confidence 36999999999999999999999999999998777654 7788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008613 149 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG 182 (559)
Q Consensus 149 kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~ 182 (559)
++|+|-+.|++.|.++++|+.+++..+.++-+..
T Consensus 154 Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K 187 (390)
T KOG0551|consen 154 KAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAK 187 (390)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 9999999999999999999999988877654433
No 17
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.47 E-value=1.8e-12 Score=130.23 Aligned_cols=87 Identities=25% Similarity=0.282 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008613 114 LACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE 193 (559)
Q Consensus 114 ~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~ 193 (559)
+.-+-+-|.-+++-++|++||..|++||+++|+++.+|++|+.||..||.|+.||+|++.||.+||.+..+|.+|+.++.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 34456678888999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHhhcC
Q 008613 194 ILMKEDG 200 (559)
Q Consensus 194 ~l~~~~~ 200 (559)
.+++.+.
T Consensus 161 ~~gk~~~ 167 (304)
T KOG0553|consen 161 ALGKYEE 167 (304)
T ss_pred ccCcHHH
Confidence 7744433
No 18
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.45 E-value=4.3e-12 Score=123.58 Aligned_cols=130 Identities=12% Similarity=0.046 Sum_probs=114.3
Q ss_pred cHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHH-HHcC
Q 008613 50 PEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCY-LKTK 128 (559)
Q Consensus 50 pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~y-lklg 128 (559)
.++...+...++..++..+..++.|..+|..|...|+|++|+..|.+++++.|.++. +++++|.|+ ...|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~---------~~~~lA~aL~~~~g 122 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAE---------LYAALATVLYYQAG 122 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHhcC
Confidence 344455666677777777778999999999999999999999999999999999876 999999985 7778
Q ss_pred C--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008613 129 Q--YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVL 188 (559)
Q Consensus 129 ~--y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L 188 (559)
+ +++|+..++++++++|+++.+++.+|.++...|+|++|+.+|+++++++|.+..-...+
T Consensus 123 ~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i 184 (198)
T PRK10370 123 QHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLV 184 (198)
T ss_pred CCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 7 59999999999999999999999999999999999999999999999998765444444
No 19
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.43 E-value=3.1e-12 Score=118.64 Aligned_cols=104 Identities=13% Similarity=0.107 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 150 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka 150 (559)
-+.++..|..++..|+|++|+..|+-+..++|.+.. .|+|||.|+..+|+|++||..|.+++.++|+++.+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~---------y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~ 105 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFD---------YWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA 105 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH---------HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence 777888999999999999999999999999999876 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008613 151 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT 183 (559)
Q Consensus 151 l~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~ 183 (559)
+++.|.||+.+|+.+.|.+.|+.++.++-.+++
T Consensus 106 ~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~ 138 (157)
T PRK15363 106 PWAAAECYLACDNVCYAIKALKAVVRICGEVSE 138 (157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhccChh
Confidence 999999999999999999999999999844433
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.38 E-value=3.5e-12 Score=144.41 Aligned_cols=134 Identities=14% Similarity=0.021 Sum_probs=121.8
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008613 67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 146 (559)
Q Consensus 67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~ 146 (559)
.+..+..+..+|.+++..|+|++|+..|.+++.++|.+.. +|+++|.+|..+|+|++|+.+|+++++++|+
T Consensus 327 ~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~---------~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 397 (615)
T TIGR00990 327 GEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQ---------SYIKRASMNLELGDPDKAEEDFDKALKLNSE 397 (615)
T ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH---------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3556778999999999999999999999999999888755 8999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613 147 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 209 (559)
Q Consensus 147 ~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i 209 (559)
++.+|+.+|.+|..+|++++|+.+|++++.++|++..++..++.+...+++...+...++.++
T Consensus 398 ~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al 460 (615)
T TIGR00990 398 DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCK 460 (615)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999888877666555555444
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.38 E-value=6.5e-12 Score=142.20 Aligned_cols=149 Identities=9% Similarity=0.005 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHH
Q 008613 52 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD 131 (559)
Q Consensus 52 e~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~ 131 (559)
++..+...++..+...+.....+..+|.+++..|+|++|+..|.++++++|.++. +|+++|.+|+.+|+|+
T Consensus 346 ~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~---------~~~~lg~~~~~~g~~~ 416 (615)
T TIGR00990 346 KHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPD---------IYYHRAQLHFIKGEFA 416 (615)
T ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHcCCHH
Confidence 3445666666666666677889999999999999999999999999999998866 9999999999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613 132 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 209 (559)
Q Consensus 132 eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i 209 (559)
+|+.+|+++++++|++..+++.+|.++..+|++++|+..|++++.++|+++.++..++.+...+++..++...+++++
T Consensus 417 ~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al 494 (615)
T TIGR00990 417 QAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAI 494 (615)
T ss_pred HHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999988887776666566555
No 22
>PRK12370 invasion protein regulator; Provisional
Probab=99.35 E-value=3.1e-11 Score=135.08 Aligned_cols=144 Identities=9% Similarity=-0.054 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHH
Q 008613 52 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD 131 (559)
Q Consensus 52 e~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~ 131 (559)
++..+...+++.+...+..+..+..+|.++...|+|++|+..|.++++++|.++. +|+++|.+|...|+++
T Consensus 319 ~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~---------a~~~lg~~l~~~G~~~ 389 (553)
T PRK12370 319 AMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISAD---------IKYYYGWNLFMAGQLE 389 (553)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHCCCHH
Confidence 3556666667777777777888888899999999999999999999999888765 8888999999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHhhcCCCCC
Q 008613 132 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS-PDDGTIADVLRDAKEILMKEDGHHGP 204 (559)
Q Consensus 132 eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~-P~~~~a~~~L~~a~~~l~~~~~~~~~ 204 (559)
+|+..|+++++++|.++.+++.++.+++..|++++|+..+++++... |+++.++..++.+...+++.+++...
T Consensus 390 eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~ 463 (553)
T PRK12370 390 EALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKL 463 (553)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999988887777878888899999999999888775 67788888888887777665554333
No 23
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.35 E-value=1.4e-11 Score=127.16 Aligned_cols=104 Identities=21% Similarity=0.112 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008613 70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK 149 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~k 149 (559)
.+..+..+|..+...|++.+|+..|.++++++|.++. +|+++|.+|...|+|++|+..|+++++++|++..
T Consensus 63 ~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~---------a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~ 133 (296)
T PRK11189 63 RAQLHYERGVLYDSLGLRALARNDFSQALALRPDMAD---------AYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY 133 (296)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHH---------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 4778999999999999999999999999999998865 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008613 150 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG 182 (559)
Q Consensus 150 al~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~ 182 (559)
+|+++|.++...|++++|+.+|++++.++|+++
T Consensus 134 a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~ 166 (296)
T PRK11189 134 AYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP 166 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999999999999999987
No 24
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.34 E-value=1.3e-10 Score=118.04 Aligned_cols=128 Identities=20% Similarity=0.239 Sum_probs=111.8
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008613 67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 146 (559)
Q Consensus 67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~ 146 (559)
.++.+.....-.......++|.++++.|.+.++..|..+... ...+..++.||.+-+++.+||..|.++|.++|+
T Consensus 265 klkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir-----~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~ 339 (504)
T KOG0624|consen 265 KLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIR-----YNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD 339 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCccccee-----eeeeheeeecccccCCHHHHHHHHHHHHhcCch
Confidence 444566666777788999999999999999999999866522 224445679999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 008613 147 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED 199 (559)
Q Consensus 147 ~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~ 199 (559)
++.+|+-|+.+|..-..|++||.+|++|++++++|..+...+..+++..++.+
T Consensus 340 dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~ 392 (504)
T KOG0624|consen 340 DVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSG 392 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999988776654
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.32 E-value=4.2e-11 Score=140.98 Aligned_cols=166 Identities=4% Similarity=-0.087 Sum_probs=130.9
Q ss_pred hhCCChHHHHHHHHHHHccCcHH----------------HHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 008613 30 LTHTPPEEVAEIGEKLANASPEE----------------IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQK 93 (559)
Q Consensus 30 l~~~~pee~~~~~~~~~~~~pee----------------~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~ 93 (559)
++..+.++......++....|+. +..+...++..++..+. +..+...|.++.+.|++++|+..
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~ 631 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSD 631 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHH
Confidence 34455555555555544444333 22233334444444454 77889999999999999999999
Q ss_pred HHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008613 94 YLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSN 173 (559)
Q Consensus 94 Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlek 173 (559)
|.+++.+.|.++. +++++|.++...|++++|+..|.++++++|+++.+++++|.+|..+|++++|+.+|++
T Consensus 632 l~~AL~l~Pd~~~---------a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~ 702 (987)
T PRK09782 632 LRAALELEPNNSN---------YQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARL 702 (987)
T ss_pred HHHHHHhCCCCHH---------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999865 8999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCc
Q 008613 174 AHEVSPDDGTIADVLRDAKEILMKEDGHHGPR 205 (559)
Q Consensus 174 Al~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~ 205 (559)
++.++|++..+...++.+..+....++.++.+
T Consensus 703 Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~ 734 (987)
T PRK09782 703 VIDDIDNQALITPLTPEQNQQRFNFRRLHEEV 734 (987)
T ss_pred HHhcCCCCchhhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999888887777766665554444333
No 26
>PRK12370 invasion protein regulator; Provisional
Probab=99.31 E-value=1.4e-11 Score=137.97 Aligned_cols=143 Identities=11% Similarity=-0.024 Sum_probs=121.4
Q ss_pred HHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhcCCCCCchhhhhHHH
Q 008613 45 LANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYS---------EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLA 115 (559)
Q Consensus 45 ~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k---------~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~ 115 (559)
+....++.+..+...++..+...+..+..+..+|.+++. .+++.+|+..|.++++++|.++.
T Consensus 269 ~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~--------- 339 (553)
T PRK12370 269 LNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQ--------- 339 (553)
T ss_pred HHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHH---------
Confidence 444566677777777887777777778888888887663 34589999999999999999876
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008613 116 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 195 (559)
Q Consensus 116 ~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l 195 (559)
+|..+|.++...|+|++|+..|+++++++|+++.+|+.+|.+|...|++++|+..|+++++++|.+..+...+..+....
T Consensus 340 a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~ 419 (553)
T PRK12370 340 ALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYH 419 (553)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc
Confidence 89999999999999999999999999999999999999999999999999999999999999999876654444444444
Q ss_pred H
Q 008613 196 M 196 (559)
Q Consensus 196 ~ 196 (559)
+
T Consensus 420 g 420 (553)
T PRK12370 420 T 420 (553)
T ss_pred c
Confidence 3
No 27
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.27 E-value=1e-10 Score=137.84 Aligned_cols=128 Identities=16% Similarity=0.126 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008613 72 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKAL 151 (559)
Q Consensus 72 ~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal 151 (559)
..+...+..+...|+|++|+..|.++++++|. +. +|+++|.++.++|++++|+..|++++.++|+++.++
T Consensus 577 ~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~---------a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~ 646 (987)
T PRK09782 577 ALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-AN---------AYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQ 646 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HH---------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 33444455566669999999999999999885 43 899999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613 152 YRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 209 (559)
Q Consensus 152 ~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i 209 (559)
+++|.++...|++++|+..|+++++++|+++.++..++.+...+++...+...+++++
T Consensus 647 ~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 647 AALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988877666666665
No 28
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.26 E-value=1.4e-10 Score=101.27 Aligned_cols=112 Identities=15% Similarity=0.159 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN--- 147 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~--- 147 (559)
++.++..|..+++.|+|++|+..|.+++...|.++. ...+++.+|.+|++.++|++|+..|.+++..+|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 75 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTY------APNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKA 75 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc------cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcc
Confidence 467889999999999999999999999998877642 34588999999999999999999999999999885
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008613 148 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVL 188 (559)
Q Consensus 148 ~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L 188 (559)
+.+++.+|.++..++++++|+..|++++...|++..+...+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 116 (119)
T TIGR02795 76 PDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQ 116 (119)
T ss_pred cHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHH
Confidence 67899999999999999999999999999999987765543
No 29
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.26 E-value=8.5e-12 Score=132.07 Aligned_cols=119 Identities=23% Similarity=0.329 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 150 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka 150 (559)
++.++.+++.+++.+.|+.|+..|.+||+++|++.. ++.||+.+|++.++|..|+.++.+||+++|...++
T Consensus 4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~---------~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~ 74 (476)
T KOG0376|consen 4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAI---------YFANRALAHLKVESFGGALHDALKAIELDPTYIKA 74 (476)
T ss_pred hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCccee---------eechhhhhheeechhhhHHHHHHhhhhcCchhhhe
Confidence 677889999999999999999999999999999876 88899999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 008613 151 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE 198 (559)
Q Consensus 151 l~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~ 198 (559)
|+|+|.++..++++.+|+.+|++...+.|+++.+...+.++...+.++
T Consensus 75 Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~ 122 (476)
T KOG0376|consen 75 YVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEE 122 (476)
T ss_pred eeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998888664
No 30
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=2.2e-11 Score=118.48 Aligned_cols=115 Identities=30% Similarity=0.308 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 150 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka 150 (559)
+..++..||.+|..++|..||.+|.++|.++|..+. .|.|++.||+++++|+.+..+|.++++++|+.+++
T Consensus 10 a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~---------Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~ 80 (284)
T KOG4642|consen 10 AEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVAS---------YYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKA 80 (284)
T ss_pred HHHHHhccccccchhhhchHHHHHHHHHhcCCCcch---------hhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHH
Confidence 778899999999999999999999999999999876 89999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHH
Q 008613 151 LYRRGQAYKDIGRLEEAVSDLSNAHEVS-----PDDGTIADVLRDAKEI 194 (559)
Q Consensus 151 l~~rG~A~~~lg~~eeAi~dlekAl~l~-----P~~~~a~~~L~~a~~~ 194 (559)
+|.+|.+++....|++||..+.++..+. |--..+...|..+++.
T Consensus 81 h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~ 129 (284)
T KOG4642|consen 81 HYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKK 129 (284)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhC
Confidence 9999999999999999999999997763 2224677777777543
No 31
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.24 E-value=1.2e-09 Score=104.74 Aligned_cols=138 Identities=16% Similarity=0.159 Sum_probs=103.5
Q ss_pred HHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHH
Q 008613 54 ATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDEC 133 (559)
Q Consensus 54 ~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eA 133 (559)
..+...++..+...+.....+...|..++..|+|++|+..|.+++...+... ....++++|.||...|++++|
T Consensus 82 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A 154 (234)
T TIGR02521 82 EKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQ-------PARSLENAGLCALKAGDFDKA 154 (234)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc-------chHHHHHHHHHHHHcCCHHHH
Confidence 3344444444444444566777888888888888888888888887432111 233678889999999999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 008613 134 IKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE 198 (559)
Q Consensus 134 i~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~ 198 (559)
+..|.+++.++|+++.+++.+|.++...|++++|+..+++++.+.|.++..+..+..+....++.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (234)
T TIGR02521 155 EKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDV 219 (234)
T ss_pred HHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhH
Confidence 99999999999988888999999999999999999999999888887777766666665555443
No 32
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.23 E-value=2.8e-10 Score=105.17 Aligned_cols=101 Identities=6% Similarity=-0.136 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHH
Q 008613 53 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE 132 (559)
Q Consensus 53 ~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~e 132 (559)
+..+...++..+...+.....+..+|.++...|+|++|+..|.+++.++|.++. .++++|.||..+|++++
T Consensus 40 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~---------a~~~lg~~l~~~g~~~e 110 (144)
T PRK15359 40 YSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPE---------PVYQTGVCLKMMGEPGL 110 (144)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcH---------HHHHHHHHHHHcCCHHH
Confidence 344555556666666666999999999999999999999999999999999987 99999999999999999
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 008613 133 CIKVGSEVLAYDAKNVKALYRRGQAYKDIG 162 (559)
Q Consensus 133 Ai~~~~~AL~ldP~~~kal~~rG~A~~~lg 162 (559)
|+..|.++++++|+++.++..+|.+...++
T Consensus 111 Ai~~~~~Al~~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 111 AREAFQTAIKMSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 999999999999999999999999887654
No 33
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.23 E-value=3.2e-10 Score=108.87 Aligned_cols=142 Identities=10% Similarity=0.043 Sum_probs=118.3
Q ss_pred HHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHH
Q 008613 56 MRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIK 135 (559)
Q Consensus 56 a~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~ 135 (559)
+...+...+...+.....+...|..++..|+|++|++.|.+++.+.|.++. ++++++.+|...|+|++|+.
T Consensus 50 A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~~~g~~~~A~~ 120 (234)
T TIGR02521 50 AKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGD---------VLNNYGTFLCQQGKYEQAMQ 120 (234)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---------HHHHHHHHHHHcccHHHHHH
Confidence 333333333334445788889999999999999999999999999887754 89999999999999999999
Q ss_pred HHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCcc
Q 008613 136 VGSEVLAYD--AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRG 206 (559)
Q Consensus 136 ~~~~AL~ld--P~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~ 206 (559)
.|.+++... +.....++.+|.++...|++++|+..|++++..+|++..++..++.+....++...+....+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 193 (234)
T TIGR02521 121 QFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLE 193 (234)
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999864 56678999999999999999999999999999999999888888888887766655443333
No 34
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.19 E-value=1.6e-10 Score=131.58 Aligned_cols=144 Identities=6% Similarity=-0.061 Sum_probs=124.3
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 008613 58 ARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVG 137 (559)
Q Consensus 58 ~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~ 137 (559)
.+++.-...++..++.++.+|......|+|++|...|..++++.|++.. ++.+++.++.+++++++|+..+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~---------a~~~~a~~L~~~~~~eeA~~~~ 143 (694)
T PRK15179 73 PELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSE---------AFILMLRGVKRQQGIEAGRAEI 143 (694)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHH---------HHHHHHHHHHHhccHHHHHHHH
Confidence 4444444456667889999999999999999999999999999998865 8999999999999999999999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchhh
Q 008613 138 SEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIE 210 (559)
Q Consensus 138 ~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i~ 210 (559)
++++..+|+++.+++.+|.++..+|+|++|+..|++++..+|+++.++-.++.+.+..++.+.+...++++++
T Consensus 144 ~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 144 ELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998899999999999998888887776666665553
No 35
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.19 E-value=5.1e-10 Score=127.74 Aligned_cols=120 Identities=15% Similarity=0.106 Sum_probs=74.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHcCCCCHHHHH
Q 008613 77 QGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE----CIKVGSEVLAYDAKNVKALY 152 (559)
Q Consensus 77 ~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~e----Ai~~~~~AL~ldP~~~kal~ 152 (559)
.+..++..|+|++|+..|.+++.+.|.++. +++++|.+|...|++++ |+..|+++++++|+++.+++
T Consensus 218 l~~~l~~~g~~~eA~~~~~~al~~~p~~~~---------~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~ 288 (656)
T PRK15174 218 AVDTLCAVGKYQEAIQTGESALARGLDGAA---------LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVT 288 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCHH---------HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 455666666666666666666666665543 56666666666666664 56666666666666666666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCc
Q 008613 153 RRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPR 205 (559)
Q Consensus 153 ~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~ 205 (559)
.+|.++...|++++|+..|++++.++|+++.++..++.+....++...+...+
T Consensus 289 ~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l 341 (656)
T PRK15174 289 LYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEF 341 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 66666666666666666666666666666666666666555555544433333
No 36
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.17 E-value=5.5e-10 Score=127.52 Aligned_cols=143 Identities=13% Similarity=0.054 Sum_probs=120.7
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHH
Q 008613 58 ARIDAQMNYEFNAAKMLKKQGNELYSEGRFSN----ALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDEC 133 (559)
Q Consensus 58 ~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~e----Ai~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eA 133 (559)
..++..+...+..+..+..+|..++..|+|++ |+..|++++.+.|.++. ++.++|.+|...|++++|
T Consensus 233 ~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~---------a~~~lg~~l~~~g~~~eA 303 (656)
T PRK15174 233 QTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVR---------IVTLYADALIRTGQNEKA 303 (656)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHH---------HHHHHHHHHHHCCCHHHH
Confidence 33333344444557778889999999999996 89999999999998755 899999999999999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613 134 IKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 209 (559)
Q Consensus 134 i~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i 209 (559)
+..++++++++|+++.+++.+|.+|..+|++++|+..|++++..+|++......++.+...+++.+++...++..+
T Consensus 304 ~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al 379 (656)
T PRK15174 304 IPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYI 379 (656)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988766667777777766666555555544
No 37
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.17 E-value=5.5e-10 Score=108.83 Aligned_cols=105 Identities=12% Similarity=0.042 Sum_probs=97.3
Q ss_pred HcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-HHc
Q 008613 83 SEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAY-KDI 161 (559)
Q Consensus 83 k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~-~~l 161 (559)
..+++++++..|.++++.+|.+.. .|+++|.+|...|+|++|+..|+++++++|+++.+++.+|.++ ...
T Consensus 51 ~~~~~~~~i~~l~~~L~~~P~~~~---------~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~ 121 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRANPQNSE---------QWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQA 121 (198)
T ss_pred CchhHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 467889999999999999999976 9999999999999999999999999999999999999999985 677
Q ss_pred CC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008613 162 GR--LEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM 196 (559)
Q Consensus 162 g~--~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~ 196 (559)
|+ +++|+..|+++++++|++..++..++.+....+
T Consensus 122 g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g 158 (198)
T PRK10370 122 GQHMTPQTREMIDKALALDANEVTALMLLASDAFMQA 158 (198)
T ss_pred CCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcC
Confidence 87 599999999999999999999999988877663
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=2.1e-10 Score=120.55 Aligned_cols=176 Identities=18% Similarity=0.146 Sum_probs=144.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008613 74 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYR 153 (559)
Q Consensus 74 lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~ 153 (559)
.--.||-|--++++++|+.+|++||+++|.... +|.-.|.=|+++++-..||..|++|++++|.+-++||.
T Consensus 333 CCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~---------aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYG 403 (559)
T KOG1155|consen 333 CCIIANYYSLRSEHEKAVMYFKRALKLNPKYLS---------AWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYG 403 (559)
T ss_pred eeeehhHHHHHHhHHHHHHHHHHHHhcCcchhH---------HHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhh
Confidence 344788899999999999999999999999865 99999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchhhhhchhhhccCCCCCCCCchhhhh
Q 008613 154 RGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIEEITEEVGAVSSGSHRSSGTEYLA 233 (559)
Q Consensus 154 rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i~e~~e~~~~~~~~~~~~s~~~~~~ 233 (559)
+|++|.-++-+.-|+-.|++|+.+.|+|+.+|..|+++..++.+..++.+-|.+++.- .+ ...+..
T Consensus 404 LGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~-~d---------te~~~l---- 469 (559)
T KOG1155|consen 404 LGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL-GD---------TEGSAL---- 469 (559)
T ss_pred hhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc-cc---------cchHHH----
Confidence 9999999999999999999999999999999999999999998888777766666511 00 001111
Q ss_pred hhcCCCCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHHHHcCCcchhhhhcCCCCCCCCHHHHH
Q 008613 234 REKADPSKSEHSANGRGSSTKPEFLPDLKDDPESIRSFQNFISNANPDSFAALSGGKAGEISPDMFK 300 (559)
Q Consensus 234 ~e~~~s~~~~~~~~~~~~~~~~~~l~~l~~~PEai~~~~~~i~~~dpe~la~m~~~~~g~~~pdm~k 300 (559)
.........++++.|+.+.|.++|..+. ..|.++|++.|
T Consensus 470 ------------------~~LakLye~l~d~~eAa~~yek~v~~~~----------~eg~~~~~t~k 508 (559)
T KOG1155|consen 470 ------------------VRLAKLYEELKDLNEAAQYYEKYVEVSE----------LEGEIDDETIK 508 (559)
T ss_pred ------------------HHHHHHHHHHHhHHHHHHHHHHHHHHHH----------hhcccchHHHH
Confidence 1123344456789999999999998532 23456666665
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.17 E-value=1.6e-10 Score=125.99 Aligned_cols=149 Identities=15% Similarity=0.115 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCH
Q 008613 51 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY 130 (559)
Q Consensus 51 ee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y 130 (559)
++++.+....+..+...+..-.+|+..|.+|.++++|+.|.-+|.+|++++|.... +.+.+|..|.++|+.
T Consensus 469 ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsv---------i~~~~g~~~~~~k~~ 539 (638)
T KOG1126|consen 469 EEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSV---------ILCHIGRIQHQLKRK 539 (638)
T ss_pred HHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchh---------HHhhhhHHHHHhhhh
Confidence 44555566666666677778899999999999999999999999999999999854 788899999999999
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccch
Q 008613 131 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLL 208 (559)
Q Consensus 131 ~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~ 208 (559)
++|+..|++|+.+||.++-..|.+|.++..+++|++|+..+++..++.|++..+...++.+.++++....+...+..+
T Consensus 540 d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A 617 (638)
T KOG1126|consen 540 DKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWA 617 (638)
T ss_pred hHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998877655444443
No 40
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.15 E-value=2.2e-10 Score=116.90 Aligned_cols=132 Identities=20% Similarity=0.155 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008613 69 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV 148 (559)
Q Consensus 69 ~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ 148 (559)
..+..|...|.++.+.|++++|+..|.++|+++|.++. ++..++.++...|+++++...+....+..|+++
T Consensus 144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~---------~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~ 214 (280)
T PF13429_consen 144 DSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPD---------ARNALAWLLIDMGDYDEAREALKRLLKAAPDDP 214 (280)
T ss_dssp T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HH---------HHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSC
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---------HHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHH
Confidence 45778899999999999999999999999999999865 788899999999999999999998888889999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613 149 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 209 (559)
Q Consensus 149 kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i 209 (559)
..+..+|.+|..+|++++|+..|+++++.+|+|+.+...+..+....++.+.+..-++.+.
T Consensus 215 ~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 215 DLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp CHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------------
T ss_pred HHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999998887666555544
No 41
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.15 E-value=7.4e-11 Score=128.58 Aligned_cols=136 Identities=18% Similarity=0.150 Sum_probs=113.4
Q ss_pred HHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 008613 65 NYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD 144 (559)
Q Consensus 65 ~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ld 144 (559)
...+..++.|...||||--+++++.||++|.+|++++|.+. .+|.-+|.=+....+|+.|..+|+.||..+
T Consensus 415 ~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~fa---------YayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 415 DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFA---------YAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccc---------hhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 34566799999999999999999999999999999999874 377778888888888888888888888888
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613 145 AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 209 (559)
Q Consensus 145 P~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i 209 (559)
|++..|||.+|.+|.+.++++.|.-.|++|+.++|.+..+...++.++.++++.+++..-+++++
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~ 550 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAI 550 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888877666555444443
No 42
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=3.6e-10 Score=119.39 Aligned_cols=122 Identities=21% Similarity=0.169 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008613 69 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV 148 (559)
Q Consensus 69 ~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ 148 (559)
..+..|.-.|..+|-.|++-.|-..+.++|.++|.... +|..|+.+|....+.++-..+|.+|..+||+|+
T Consensus 324 ~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~---------lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~ 394 (606)
T KOG0547|consen 324 YMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS---------LYIKRAAAYADENQSEKMWKDFNKAEDLDPENP 394 (606)
T ss_pred HHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccch---------HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCC
Confidence 34888889999999999999999999999999999876 799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 008613 149 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED 199 (559)
Q Consensus 149 kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~ 199 (559)
.+||.||+.+.-+++|++|+.||++++.++|++.-.+-.+.-+..+..+..
T Consensus 395 dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~ 445 (606)
T KOG0547|consen 395 DVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIA 445 (606)
T ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999877777777777776443
No 43
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.13 E-value=1.8e-10 Score=92.08 Aligned_cols=66 Identities=29% Similarity=0.491 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 008613 114 LACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIG-RLEEAVSDLSNAHEVSP 179 (559)
Q Consensus 114 ~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg-~~eeAi~dlekAl~l~P 179 (559)
+.+|+++|.+++..++|++|+.+|+++|+++|+++.+|+++|.+|..+| ++++|+.+|+++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4589999999999999999999999999999999999999999999999 79999999999999998
No 44
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.12 E-value=2e-09 Score=106.48 Aligned_cols=155 Identities=15% Similarity=0.024 Sum_probs=122.0
Q ss_pred HHHhhCCChHHHHHHHHHHHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCC
Q 008613 27 AEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS 106 (559)
Q Consensus 27 ~e~l~~~~pee~~~~~~~~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~ 106 (559)
...+...+.++......++....|.. ......+..+|.+++..|+|++|+..|.++++..|.++.
T Consensus 41 ~~~~~~~~~~~A~~~~~~~~~~~p~~---------------~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 105 (235)
T TIGR03302 41 KEALDSGDYTEAIKYFEALESRYPFS---------------PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPD 105 (235)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCc---------------hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc
Confidence 33445555555555555444444433 123467888999999999999999999999999998765
Q ss_pred chhhhhHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHcCCCCHHHH-----------------HHHHHHHHHc
Q 008613 107 SEGRTLLLACSLNSMSCYLKT--------KQYDECIKVGSEVLAYDAKNVKAL-----------------YRRGQAYKDI 161 (559)
Q Consensus 107 ~e~~~l~~~~~~nlA~~ylkl--------g~y~eAi~~~~~AL~ldP~~~kal-----------------~~rG~A~~~l 161 (559)
...+++.+|.||... +++++|++.+.++++.+|++..++ +.+|..|...
T Consensus 106 ------~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~ 179 (235)
T TIGR03302 106 ------ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKR 179 (235)
T ss_pred ------hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 234788999999887 889999999999999999986442 4678899999
Q ss_pred CCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHhhcCCC
Q 008613 162 GRLEEAVSDLSNAHEVSPDD---GTIADVLRDAKEILMKEDGHH 202 (559)
Q Consensus 162 g~~eeAi~dlekAl~l~P~~---~~a~~~L~~a~~~l~~~~~~~ 202 (559)
|++++|+..|++++...|++ ..++..++.+...+++..++.
T Consensus 180 g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~ 223 (235)
T TIGR03302 180 GAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQ 223 (235)
T ss_pred CChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998765 578888999988887765543
No 45
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.12 E-value=5.4e-10 Score=90.28 Aligned_cols=99 Identities=30% Similarity=0.435 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008613 73 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALY 152 (559)
Q Consensus 73 ~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~ 152 (559)
.+...|..++..|+|.+|+..|.++++..|.++ .++++++.||...+++++|+..|.+++.+.|.+..+++
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 72 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNA---------DAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYY 72 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHH
Confidence 467899999999999999999999999877764 38899999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008613 153 RRGQAYKDIGRLEEAVSDLSNAHEVSPD 180 (559)
Q Consensus 153 ~rG~A~~~lg~~eeAi~dlekAl~l~P~ 180 (559)
.+|.++...|++++|...+++++.++|+
T Consensus 73 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 73 NLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 9999999999999999999999998874
No 46
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.12 E-value=2.2e-09 Score=101.82 Aligned_cols=109 Identities=18% Similarity=0.230 Sum_probs=97.3
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008613 67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 146 (559)
Q Consensus 67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~ 146 (559)
....+..+..+|..+...|+|++|+.+|.+++.+.+..+. ...+++++|.||.++|+|++|+..+.+++.++|+
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 104 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPND------RSYILYNMGIIYASNGEHDKALEYYHQALELNPK 104 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccch------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 4455888999999999999999999999999998766432 2458999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCC
Q 008613 147 NVKALYRRGQAYKDIGR--------------LEEAVSDLSNAHEVSPDD 181 (559)
Q Consensus 147 ~~kal~~rG~A~~~lg~--------------~eeAi~dlekAl~l~P~~ 181 (559)
+..++..+|.+|..+++ +++|+..+++++.++|++
T Consensus 105 ~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 105 QPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred cHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 99999999999999988 678888888888888876
No 47
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1.7e-09 Score=116.20 Aligned_cols=122 Identities=21% Similarity=0.306 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 150 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka 150 (559)
+-.+.+.|.++|..+.|.+|+.+|.+++...+..... .......+.|+|.+|.++++|++||..|+++|.+.|.++.+
T Consensus 414 plv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e--~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~ 491 (611)
T KOG1173|consen 414 PLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNE--KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDAST 491 (611)
T ss_pred chhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccc--ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhH
Confidence 8889999999999999999999999999665554321 12466789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008613 151 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI 194 (559)
Q Consensus 151 l~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~ 194 (559)
|.-.|.+|..+|+++.|+..|.++|.+.|++..+...|+.+.+.
T Consensus 492 ~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 492 HASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999998888876555
No 48
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=9.5e-10 Score=115.66 Aligned_cols=144 Identities=15% Similarity=0.062 Sum_probs=133.5
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 008613 58 ARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVG 137 (559)
Q Consensus 58 ~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~ 137 (559)
.-++..++.++.....|-..|-.|...++...||+.|++|++++|.+.. +||.+|++|--++-+.=|+-+|
T Consensus 351 ~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyR---------AWYGLGQaYeim~Mh~YaLyYf 421 (559)
T KOG1155|consen 351 MYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYR---------AWYGLGQAYEIMKMHFYALYYF 421 (559)
T ss_pred HHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHH---------HHhhhhHHHHHhcchHHHHHHH
Confidence 4555666667777888999999999999999999999999999999865 9999999999999999999999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchhh
Q 008613 138 SEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIE 210 (559)
Q Consensus 138 ~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i~ 210 (559)
++|+++.|.+...|-.+|.||..+++.++|+++|.+++...-.+..++..|+.+++++++.+++...+++.++
T Consensus 422 qkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 422 QKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999888889999999999999999998888888774
No 49
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.09 E-value=3.8e-10 Score=121.45 Aligned_cols=118 Identities=18% Similarity=0.139 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008613 70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK 149 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~k 149 (559)
.++....+|..|+-.|+|++||++|+.||...|.+.. +|.++|+.+-...++++||..|++||+|.|.+++
T Consensus 429 DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~---------lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR 499 (579)
T KOG1125|consen 429 DPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYL---------LWNRLGATLANGNRSEEAISAYNRALQLQPGYVR 499 (579)
T ss_pred ChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHH---------HHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeee
Confidence 4777888999999999999999999999999999865 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHHH
Q 008613 150 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD----------GTIADVLRDAKEILM 196 (559)
Q Consensus 150 al~~rG~A~~~lg~~eeAi~dlekAl~l~P~~----------~~a~~~L~~a~~~l~ 196 (559)
+.|++|.++..+|.|+||+.+|-.||.+.+.. ..+|..|+.+....+
T Consensus 500 ~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~ 556 (579)
T KOG1125|consen 500 VRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMN 556 (579)
T ss_pred eehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999987651 358888886665554
No 50
>PLN02789 farnesyltranstransferase
Probab=99.06 E-value=5.4e-09 Score=109.09 Aligned_cols=124 Identities=10% Similarity=-0.040 Sum_probs=111.6
Q ss_pred HhHHhHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCH--HHHHHHHHH
Q 008613 63 QMNYEFNAAKMLKKQGNELYSEG-RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY--DECIKVGSE 139 (559)
Q Consensus 63 ~~~~~~~~a~~lk~~Gn~~~k~g-~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y--~eAi~~~~~ 139 (559)
.++..+.....|..+|.++...+ ++.+++..+.+++..+|.+.. +|++|+.++.+++++ ++++.++.+
T Consensus 63 aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyq---------aW~~R~~~l~~l~~~~~~~el~~~~k 133 (320)
T PLN02789 63 VIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQ---------IWHHRRWLAEKLGPDAANKELEFTRK 133 (320)
T ss_pred HHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchH---------HhHHHHHHHHHcCchhhHHHHHHHHH
Confidence 33334444888999999999988 689999999999999999866 899999999999874 788999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008613 140 VLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 195 (559)
Q Consensus 140 AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l 195 (559)
+|+++|+|..+|+.|+.++..+++|++|+.++.++|+++|.+..+|.....+...+
T Consensus 134 al~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 134 ILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS 189 (320)
T ss_pred HHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999887655
No 51
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.06 E-value=6.8e-09 Score=97.96 Aligned_cols=109 Identities=17% Similarity=0.089 Sum_probs=92.5
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008613 67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 146 (559)
Q Consensus 67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~ 146 (559)
....+..+...|.+++..|+|++|+..|.+++.+.+.... ...+|+++|.+|...|++++|+..|.+++.++|.
T Consensus 31 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~------~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~ 104 (168)
T CHL00033 31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYD------RSYILYNIGLIHTSNGEHTKALEYYFQALERNPF 104 (168)
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchh------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 3445888999999999999999999999999998765322 3458999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHH-------HcCCHH-------HHHHHHHHHHHhCCCC
Q 008613 147 NVKALYRRGQAYK-------DIGRLE-------EAVSDLSNAHEVSPDD 181 (559)
Q Consensus 147 ~~kal~~rG~A~~-------~lg~~e-------eAi~dlekAl~l~P~~ 181 (559)
+...+..+|.+|. .+|+++ +|+..|++++..+|++
T Consensus 105 ~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 105 LPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred cHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 9999999999998 777776 5555666677778765
No 52
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.05 E-value=3.6e-09 Score=109.32 Aligned_cols=115 Identities=13% Similarity=0.008 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHH
Q 008613 53 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE 132 (559)
Q Consensus 53 ~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~e 132 (559)
...+...++..++..+..+..+..+|..+...|+|++|+..|.++++++|.+.. +|+++|.+|...|+|++
T Consensus 80 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~---------a~~~lg~~l~~~g~~~e 150 (296)
T PRK11189 80 RALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY---------AYLNRGIALYYGGRYEL 150 (296)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHCCCHHH
Confidence 345556667777777778999999999999999999999999999999998865 89999999999999999
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613 133 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV 177 (559)
Q Consensus 133 Ai~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l 177 (559)
|+++|+++++++|+++...+.+ ..+...+++++|+..|++++..
T Consensus 151 A~~~~~~al~~~P~~~~~~~~~-~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 151 AQDDLLAFYQDDPNDPYRALWL-YLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHHhCCCCHHHHHHH-HHHHccCCHHHHHHHHHHHHhh
Confidence 9999999999999997433322 2234567888888888766554
No 53
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.04 E-value=4.4e-10 Score=89.78 Aligned_cols=66 Identities=20% Similarity=0.249 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCC
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK-QYDECIKVGSEVLAYDA 145 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg-~y~eAi~~~~~AL~ldP 145 (559)
+..|..+|.+++..|+|++|+.+|+++++++|.++. +|+++|.||.++| +|++|+.+|+++|+++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~---------~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAE---------AYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHH---------HHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---------HHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 778999999999999999999999999999988755 9999999999999 79999999999999998
No 54
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.04 E-value=1.3e-08 Score=123.30 Aligned_cols=143 Identities=10% Similarity=0.050 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCch-hhhh----HHHHHHHHHHHHH
Q 008613 51 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSE-GRTL----LLACSLNSMSCYL 125 (559)
Q Consensus 51 ee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e-~~~l----~~~~~~nlA~~yl 125 (559)
.++..+...++..++..+..+..+..+|.++++.|+|++|+.+|++++++.|.+.... ...+ ...++..++.+++
T Consensus 283 g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~ 362 (1157)
T PRK11447 283 GQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAAL 362 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHH
Confidence 3455566677777776777789999999999999999999999999999988765311 1111 1223456788999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008613 126 KTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE 193 (559)
Q Consensus 126 klg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~ 193 (559)
+.|++++|+..|+++++++|+++.+++.+|.+|...|++++|+..|+++++++|++..++..+..+..
T Consensus 363 ~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~ 430 (1157)
T PRK11447 363 KANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR 430 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988877777653
No 55
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.04 E-value=4.6e-09 Score=103.95 Aligned_cols=117 Identities=16% Similarity=0.216 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008613 69 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV 148 (559)
Q Consensus 69 ~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ 148 (559)
..+..++..|..++..|+|++|+..|.+++...|.++. ...+++++|.+|...++|++|+..|+++++.+|+++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~------~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~ 104 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPY------AEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP 104 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchh------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence 34788999999999999999999999999999888753 345789999999999999999999999999999887
Q ss_pred H---HHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008613 149 K---ALYRRGQAYKDI--------GRLEEAVSDLSNAHEVSPDDGTIADVLRDA 191 (559)
Q Consensus 149 k---al~~rG~A~~~l--------g~~eeAi~dlekAl~l~P~~~~a~~~L~~a 191 (559)
. +++.+|.++... +++++|+..|++++..+|++..++..+..+
T Consensus 105 ~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~ 158 (235)
T TIGR03302 105 DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRM 158 (235)
T ss_pred chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHH
Confidence 6 799999999987 889999999999999999997766555444
No 56
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.03 E-value=1.2e-08 Score=116.30 Aligned_cols=135 Identities=10% Similarity=-0.085 Sum_probs=114.3
Q ss_pred HHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHH
Q 008613 56 MRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIK 135 (559)
Q Consensus 56 a~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~ 135 (559)
+...+.+.++..+..+.++.+.+.++.+.+++++|+..+.+++...|+++. .++.+|.|+.++|+|++|+.
T Consensus 105 a~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~---------~~~~~a~~l~~~g~~~~A~~ 175 (694)
T PRK15179 105 GLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAR---------EILLEAKSWDEIGQSEQADA 175 (694)
T ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHH---------HHHHHHHHHHHhcchHHHHH
Confidence 445555555566666999999999999999999999999999999999876 99999999999999999999
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHH---HHHHHhhc
Q 008613 136 VGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI-ADVLRDA---KEILMKED 199 (559)
Q Consensus 136 ~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a-~~~L~~a---~~~l~~~~ 199 (559)
.|++++..+|+++.++..+|.++...|+.++|+..|++++.+..+.... ...+.++ ...+.+.+
T Consensus 176 ~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (694)
T PRK15179 176 CFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLVDLNADLAALRRLG 243 (694)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999997665433 3333333 34444444
No 57
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.03 E-value=1.4e-09 Score=110.68 Aligned_cols=115 Identities=21% Similarity=0.230 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008613 68 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN 147 (559)
Q Consensus 68 ~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~ 147 (559)
...++...++|+.++.+|+|.+|+..|..|++.+|... .++|.||.+|+.+|+-..|+.+++++|++.|+.
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y---------~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF 105 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNY---------QAIFRRATVYLAMGKSKAALQDLSRVLELKPDF 105 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhH---------HHHHHHHHHHhhhcCCccchhhHHHHHhcCccH
Confidence 34588999999999999999999999999999988874 389999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHH
Q 008613 148 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD---GTIADVLRDA 191 (559)
Q Consensus 148 ~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~---~~a~~~L~~a 191 (559)
..+...||.+++..|++++|..||..+|..+|.+ .++.+.|..+
T Consensus 106 ~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~ 152 (504)
T KOG0624|consen 106 MAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALI 152 (504)
T ss_pred HHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhH
Confidence 9999999999999999999999999999999965 3444444443
No 58
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.01 E-value=1.5e-08 Score=98.83 Aligned_cols=118 Identities=14% Similarity=0.039 Sum_probs=57.0
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008613 59 RIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGS 138 (559)
Q Consensus 59 ~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~ 138 (559)
.+++.++..+.....|...+-.|-+.|..+.|-+.|++|+.+.|.+.+ +++|-|..++..|+|++|...|+
T Consensus 57 nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~Gd---------VLNNYG~FLC~qg~~~eA~q~F~ 127 (250)
T COG3063 57 NLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGD---------VLNNYGAFLCAQGRPEEAMQQFE 127 (250)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccc---------hhhhhhHHHHhCCChHHHHHHHH
Confidence 333333333333444445555555555555555555555555555444 45555555555555555555555
Q ss_pred HHHHcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008613 139 EVLAYDA---KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIAD 186 (559)
Q Consensus 139 ~AL~ldP---~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~ 186 (559)
+|+. +| .....|-++|.|-+..|+++.|..+|+++|+++|+.+....
T Consensus 128 ~Al~-~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l 177 (250)
T COG3063 128 RALA-DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALL 177 (250)
T ss_pred HHHh-CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHH
Confidence 5543 22 22344555555555555555555555555555554443333
No 59
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.00 E-value=7.2e-09 Score=119.28 Aligned_cols=133 Identities=16% Similarity=0.139 Sum_probs=103.3
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 008613 58 ARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVG 137 (559)
Q Consensus 58 ~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~ 137 (559)
..++..+...+.....+...|..+...|++++|+..|.++++..|.++. ++.+++.+|.+.|+ .+|+..+
T Consensus 757 ~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~---------~~~~l~~~~~~~~~-~~A~~~~ 826 (899)
T TIGR02917 757 KTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAV---------VLNNLAWLYLELKD-PRALEYA 826 (899)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHhcCc-HHHHHHH
Confidence 3333334444455677778888888888888888888888888777644 77888888888888 7788888
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcC
Q 008613 138 SEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG 200 (559)
Q Consensus 138 ~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~ 200 (559)
++++.+.|+++..+..+|.+|...|++++|+..|+++++++|.++.++..+..+....++..+
T Consensus 827 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~ 889 (899)
T TIGR02917 827 EKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAE 889 (899)
T ss_pred HHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHH
Confidence 888888888888888888888888888888888888888888888888888777776655443
No 60
>PRK15331 chaperone protein SicA; Provisional
Probab=99.00 E-value=7.7e-09 Score=96.60 Aligned_cols=116 Identities=13% Similarity=0.101 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 150 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka 150 (559)
-+.++..|-.+|..|+|++|...|+-...+++.++. .|..+|.|+..+++|++|+..|..+..++++++..
T Consensus 37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~---------Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p 107 (165)
T PRK15331 37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPD---------YTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRP 107 (165)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCc
Confidence 777888999999999999999999999999888866 78999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008613 151 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM 196 (559)
Q Consensus 151 l~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~ 196 (559)
+++.|.||+.+|+.+.|..+|+.++. .|.+..+...-....+.+.
T Consensus 108 ~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~l~ 152 (165)
T PRK15331 108 VFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKALVYLEALK 152 (165)
T ss_pred cchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998 6777777666555555554
No 61
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.00 E-value=1.6e-08 Score=116.42 Aligned_cols=124 Identities=22% Similarity=0.201 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008613 68 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN 147 (559)
Q Consensus 68 ~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~ 147 (559)
...+..+...|.+++..|+|++|+..|.+++...|.+.. +++.++.+++..|+|++|+..++++++.+|.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 192 (899)
T TIGR02917 122 EGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLY---------AKLGLAQLALAENRFDEARALIDEVLTADPGN 192 (899)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh---------hHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 345677889999999999999999999999999888765 88999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcC
Q 008613 148 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG 200 (559)
Q Consensus 148 ~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~ 200 (559)
..+++.+|.++...|++++|+..|++++.++|++..++..+..+....++..+
T Consensus 193 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~ 245 (899)
T TIGR02917 193 VDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEE 245 (899)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999998888877777665554443
No 62
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.99 E-value=9.1e-09 Score=100.26 Aligned_cols=132 Identities=17% Similarity=0.092 Sum_probs=88.6
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 008613 58 ARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVG 137 (559)
Q Consensus 58 ~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~ 137 (559)
+..+..+...++..+.+.+.|..++.+|+|++|...|++|+. +|..+. ....|.|++.|.++.|+++.|..++
T Consensus 90 e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~-~P~Y~~------~s~t~eN~G~Cal~~gq~~~A~~~l 162 (250)
T COG3063 90 ESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALA-DPAYGE------PSDTLENLGLCALKAGQFDQAEEYL 162 (250)
T ss_pred HHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHh-CCCCCC------cchhhhhhHHHHhhcCCchhHHHHH
Confidence 444444555556677777777777777777777777777776 344433 3346777777777777777777777
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008613 138 SEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM 196 (559)
Q Consensus 138 ~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~ 196 (559)
+++|+++|+++-++..++..++..|+|..|...+++....-+-..+.+...-++.+.++
T Consensus 163 ~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~g 221 (250)
T COG3063 163 KRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLG 221 (250)
T ss_pred HHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhc
Confidence 77777777777777777777777777777777777776655544444443344444443
No 63
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.99 E-value=1.1e-09 Score=91.44 Aligned_cols=83 Identities=25% Similarity=0.376 Sum_probs=73.6
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 008613 84 EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGR 163 (559)
Q Consensus 84 ~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~ 163 (559)
.|+|++|+..|.+++...|.++ ...+++++|.||++.|+|++|+..+++ +++++.++..++.+|.++..+|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~-------~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~ 73 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNP-------NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGK 73 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTH-------HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-
T ss_pred CccHHHHHHHHHHHHHHCCCCh-------hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCC
Confidence 6899999999999999988632 234788899999999999999999999 88999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 008613 164 LEEAVSDLSNA 174 (559)
Q Consensus 164 ~eeAi~dlekA 174 (559)
|++|+..|+++
T Consensus 74 y~eAi~~l~~~ 84 (84)
T PF12895_consen 74 YEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcC
Confidence 99999999875
No 64
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.99 E-value=9.6e-09 Score=124.49 Aligned_cols=141 Identities=13% Similarity=0.109 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCch-----------------------
Q 008613 52 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSE----------------------- 108 (559)
Q Consensus 52 e~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e----------------------- 108 (559)
++..+...++..++..+..+..+..+|.+++..|+|++|+++|+++++++|.+...-
T Consensus 366 ~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~ 445 (1157)
T PRK11447 366 NLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLS 445 (1157)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCC
Confidence 344566666666666666788899999999999999999999999999988865310
Q ss_pred ----------hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008613 109 ----------GRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS 178 (559)
Q Consensus 109 ----------~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~ 178 (559)
...+...++.+++.++...|++++|+..|+++++++|+++.+++.+|.+|..+|++++|+..|++++.++
T Consensus 446 ~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~ 525 (1157)
T PRK11447 446 ASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK 525 (1157)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 0011123456678889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHH
Q 008613 179 PDDGTIADVLRDAK 192 (559)
Q Consensus 179 P~~~~a~~~L~~a~ 192 (559)
|+++.++..+....
T Consensus 526 P~~~~~~~a~al~l 539 (1157)
T PRK11447 526 PNDPEQVYAYGLYL 539 (1157)
T ss_pred CCCHHHHHHHHHHH
Confidence 99988776665543
No 65
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1.1e-08 Score=103.68 Aligned_cols=139 Identities=18% Similarity=0.161 Sum_probs=119.4
Q ss_pred cCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHc
Q 008613 48 ASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT 127 (559)
Q Consensus 48 ~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylkl 127 (559)
..++++......++..++.++..++.|.-+|.+|...+++..|...|.+|+++.|++++ ++..+|.+++..
T Consensus 133 ~~~~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~---------~~~g~aeaL~~~ 203 (287)
T COG4235 133 PAEQEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPE---------ILLGLAEALYYQ 203 (287)
T ss_pred CCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHh
Confidence 45556777888999999999999999999999999999999999999999999999986 666777666554
Q ss_pred C---CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008613 128 K---QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 195 (559)
Q Consensus 128 g---~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l 195 (559)
. .-.++...++++|++||.++++++.+|..++..|+|.+|+..|+..+.+.|.+..-...+.......
T Consensus 204 a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia~~ 274 (287)
T COG4235 204 AGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIARA 274 (287)
T ss_pred cCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHH
Confidence 3 4678889999999999999999999999999999999999999999999987765555555444333
No 66
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.98 E-value=1.7e-09 Score=113.08 Aligned_cols=124 Identities=19% Similarity=0.167 Sum_probs=112.7
Q ss_pred HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008613 66 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA 145 (559)
Q Consensus 66 ~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP 145 (559)
.....+.++.++||..|..|+|++|++.|.+||..+..+. .+++|.|..+..+|++++|+++|-++..+--
T Consensus 485 ~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~---------ealfniglt~e~~~~ldeald~f~klh~il~ 555 (840)
T KOG2003|consen 485 IDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCT---------EALFNIGLTAEALGNLDEALDCFLKLHAILL 555 (840)
T ss_pred ccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHH---------HHHHHhcccHHHhcCHHHHHHHHHHHHHHHH
Confidence 3444678899999999999999999999999998765553 4999999999999999999999999988888
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 008613 146 KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE 198 (559)
Q Consensus 146 ~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~ 198 (559)
+++.+++.++.+|..+.+..+|+++|-++..+-|+++.++..|+.+..+-++.
T Consensus 556 nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdk 608 (840)
T KOG2003|consen 556 NNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDK 608 (840)
T ss_pred hhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccch
Confidence 99999999999999999999999999999999999999999999987766543
No 67
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=1.2e-09 Score=113.55 Aligned_cols=156 Identities=17% Similarity=0.111 Sum_probs=133.0
Q ss_pred HHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCch---hhhhHHHHHHHHHHHHHHcCCH
Q 008613 54 ATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSE---GRTLLLACSLNSMSCYLKTKQY 130 (559)
Q Consensus 54 ~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e---~~~l~~~~~~nlA~~ylklg~y 130 (559)
..+..+++..++.....+.+++..|.+++-..+.+.|+.+|.++|.++|.+.... ...-....+.++|.-.++.|+|
T Consensus 186 ~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y 265 (486)
T KOG0550|consen 186 DEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNY 265 (486)
T ss_pred hhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccch
Confidence 4455677777777888899999999999999999999999999999999875432 1122455788899999999999
Q ss_pred HHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCcc
Q 008613 131 DECIKVGSEVLAYDAKN----VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRG 206 (559)
Q Consensus 131 ~eAi~~~~~AL~ldP~~----~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~ 206 (559)
.+|.+.|+++|.++|++ ++.|++|+.++..+|+.++|+.|++.++.|+|..-.++.+.+.++..+++.+++.+.++
T Consensus 266 ~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~ 345 (486)
T KOG0550|consen 266 RKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYE 345 (486)
T ss_pred hHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999986 67899999999999999999999999999999998888888888888887776655555
Q ss_pred chh
Q 008613 207 LLI 209 (559)
Q Consensus 207 ~~i 209 (559)
+++
T Consensus 346 ~a~ 348 (486)
T KOG0550|consen 346 KAM 348 (486)
T ss_pred HHH
Confidence 554
No 68
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.95 E-value=2.7e-08 Score=115.68 Aligned_cols=115 Identities=14% Similarity=0.111 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 150 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka 150 (559)
+..+...|..+...|++.+|+.+|.+++.+.|.++. +++.++.++...|++++|+..+.++++.+|+++.
T Consensus 49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~---------a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~- 118 (765)
T PRK10049 49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDD---------YQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN- 118 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-
Confidence 667899999999999999999999999999998865 7889999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008613 151 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 195 (559)
Q Consensus 151 l~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l 195 (559)
++.+|.++...|++++|+..|+++++++|+++.++..+..+....
T Consensus 119 ~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~ 163 (765)
T PRK10049 119 LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNN 163 (765)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999888887766543
No 69
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.94 E-value=2.6e-08 Score=101.14 Aligned_cols=110 Identities=12% Similarity=0.064 Sum_probs=97.2
Q ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---
Q 008613 72 KMLKKQGNEL-YSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN--- 147 (559)
Q Consensus 72 ~~lk~~Gn~~-~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~--- 147 (559)
..++..+..+ ++.|+|++|+..|.+.+...|..+ +...+++.+|.+|+..|+|++|+..|.++++..|++
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~------~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~ 216 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDST------YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKA 216 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCc------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch
Confidence 5677777776 678999999999999999988764 234589999999999999999999999999998875
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008613 148 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADV 187 (559)
Q Consensus 148 ~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~ 187 (559)
+.+++.+|.+|..+|++++|+..|+++++.+|+...+...
T Consensus 217 ~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A 256 (263)
T PRK10803 217 ADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQA 256 (263)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 7899999999999999999999999999999998765443
No 70
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.94 E-value=3.1e-09 Score=83.93 Aligned_cols=65 Identities=28% Similarity=0.388 Sum_probs=60.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008613 118 LNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG 182 (559)
Q Consensus 118 ~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~ 182 (559)
+.+|..|++.|+|++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999975
No 71
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.93 E-value=2.8e-08 Score=105.30 Aligned_cols=143 Identities=15% Similarity=0.034 Sum_probs=114.1
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHH
Q 008613 55 TMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 134 (559)
Q Consensus 55 aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi 134 (559)
.+...+...++..+.....+..++..+.+.|+|++|++.|.+++...|.... .....++++++.+|.+.+++++|+
T Consensus 125 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 125 RAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLR----VEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred HHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcch----HHHHHHHHHHHHHHHhCCCHHHHH
Confidence 3334444444434445677888999999999999999999999988765432 123446788999999999999999
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHhhcCC
Q 008613 135 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD-GTIADVLRDAKEILMKEDGH 201 (559)
Q Consensus 135 ~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~-~~a~~~L~~a~~~l~~~~~~ 201 (559)
..|+++++++|++..+++.+|.+|...|++++|+..|++++..+|.+ ..++..+..+....++.+.+
T Consensus 201 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A 268 (389)
T PRK11788 201 ALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEG 268 (389)
T ss_pred HHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999999999999999999999999999999876 45566677776666554443
No 72
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.92 E-value=3.1e-09 Score=95.75 Aligned_cols=109 Identities=17% Similarity=0.063 Sum_probs=96.9
Q ss_pred HHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008613 92 QKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDL 171 (559)
Q Consensus 92 ~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dl 171 (559)
+.|.+++.+.|.+.. .++.++.+|+..|+|++|+..+++++.++|+++.+++++|.+|...|++++|+..|
T Consensus 4 ~~~~~~l~~~p~~~~---------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 74 (135)
T TIGR02552 4 ATLKDLLGLDSEQLE---------QIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAY 74 (135)
T ss_pred hhHHHHHcCChhhHH---------HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899998887644 78899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613 172 SNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 209 (559)
Q Consensus 172 ekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i 209 (559)
++++.++|++...+..++.+....++.+.+...++.++
T Consensus 75 ~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 112 (135)
T TIGR02552 75 ALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAI 112 (135)
T ss_pred HHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999888877666554444443
No 73
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.92 E-value=7.1e-08 Score=102.25 Aligned_cols=126 Identities=16% Similarity=0.082 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HH
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN-VK 149 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~-~k 149 (559)
+..+...|..+++.|++++|+..|.++++..|.... +++.++.+|.+.|++++|++.++++++++|.+ ..
T Consensus 180 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 250 (389)
T PRK11788 180 AHFYCELAQQALARGDLDAARALLKKALAADPQCVR---------ASILLGDLALAQGDYAAAIEALERVEEQDPEYLSE 250 (389)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHH---------HHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHH
Confidence 345677899999999999999999999999877644 88899999999999999999999999999987 46
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCcc
Q 008613 150 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRG 206 (559)
Q Consensus 150 al~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~ 206 (559)
++..++.+|...|++++|+..+++++.++|+...+ ..+..+....++.+.+...++
T Consensus 251 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~~~A~~~l~ 306 (389)
T PRK11788 251 VLPKLMECYQALGDEAEGLEFLRRALEEYPGADLL-LALAQLLEEQEGPEAAQALLR 306 (389)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH-HHHHHHHHHhCCHHHHHHHHH
Confidence 78899999999999999999999999999987554 666666666555544433333
No 74
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.92 E-value=1.9e-08 Score=108.54 Aligned_cols=203 Identities=14% Similarity=0.052 Sum_probs=150.4
Q ss_pred ChHHHHHHHHHHhcCCHHHHHHHHHHhhCCChHHHHHHHHH-HHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Q 008613 4 NPELMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEK-LANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELY 82 (559)
Q Consensus 4 ~pe~l~~A~e~mk~m~pedl~~a~e~l~~~~pee~~~~~~~-~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~ 82 (559)
.|+-+++..+.|++..--...-++|..-.-+|+++++=.+- +....-+.--.+..-++..++..+.+-+++..++..|.
T Consensus 285 ~pdPf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSyt 364 (579)
T KOG1125|consen 285 HPDPFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYT 364 (579)
T ss_pred CCChHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHh
Confidence 46667777777777766555556665555677766542220 11111111122335556666677888888999999999
Q ss_pred HcCCHHHHHHHHHHHHHhcCCCCCc----------------------------------hhhhhHHHHHHHHHHHHHHcC
Q 008613 83 SEGRFSNALQKYLLAKKNLQGIHSS----------------------------------EGRTLLLACSLNSMSCYLKTK 128 (559)
Q Consensus 83 k~g~y~eAi~~Y~kAL~l~p~~~~~----------------------------------e~~~l~~~~~~nlA~~ylklg 128 (559)
.+|.-.+|++++.+=|...|..... ........++..||.+|.-.+
T Consensus 365 Neg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ 444 (579)
T KOG1125|consen 365 NEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG 444 (579)
T ss_pred hhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch
Confidence 9998888988887777665432100 001133457778999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCcc
Q 008613 129 QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRG 206 (559)
Q Consensus 129 ~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~ 206 (559)
+|++||.+|+.||..+|++...|.|+|.++.+-.+.+|||..|++||+|.|.+..++.+|+..+-.++.++++.+.+=
T Consensus 445 efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999888887776544433
No 75
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.89 E-value=4.3e-08 Score=97.21 Aligned_cols=126 Identities=15% Similarity=0.049 Sum_probs=114.8
Q ss_pred HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008613 66 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA 145 (559)
Q Consensus 66 ~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP 145 (559)
+.......+..+|...++.|+|.+|+..+.++..+.|.+.. +|.-+|.||.+.|++++|-..|.+++++.|
T Consensus 95 ~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~---------~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~ 165 (257)
T COG5010 95 AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWE---------AWNLLGAALDQLGRFDEARRAYRQALELAP 165 (257)
T ss_pred cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChh---------hhhHHHHHHHHccChhHHHHHHHHHHHhcc
Confidence 34444666777999999999999999999999999999977 999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcC
Q 008613 146 KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG 200 (559)
Q Consensus 146 ~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~ 200 (559)
+++.++.++|..|.-.|+++.|...+.++...-+.+..+..+|..+....++...
T Consensus 166 ~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 166 NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHH
Confidence 9999999999999999999999999999998888899999999988777765443
No 76
>PLN02789 farnesyltranstransferase
Probab=98.87 E-value=7.3e-08 Score=100.68 Aligned_cols=131 Identities=10% Similarity=-0.053 Sum_probs=113.0
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHH
Q 008613 55 TMRARIDAQMNYEFNAAKMLKKQGNELYSEGRF--SNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE 132 (559)
Q Consensus 55 aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y--~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~e 132 (559)
.+...+...+...++..+.|..++.++.+.+++ .+++.++.++|+.+|.+.. +|++++.++..+++|++
T Consensus 90 eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~---------AW~~R~w~l~~l~~~~e 160 (320)
T PLN02789 90 EELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYH---------AWSHRQWVLRTLGGWED 160 (320)
T ss_pred HHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHH---------HHHHHHHHHHHhhhHHH
Confidence 344555555556777778899999988888874 7889999999999998865 99999999999999999
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008613 133 CIKVGSEVLAYDAKNVKALYRRGQAYKDI---GRL----EEAVSDLSNAHEVSPDDGTIADVLRDAKEI 194 (559)
Q Consensus 133 Ai~~~~~AL~ldP~~~kal~~rG~A~~~l---g~~----eeAi~dlekAl~l~P~~~~a~~~L~~a~~~ 194 (559)
++++|+++|++||.|..+|+.|+.++..+ +++ ++++.++.+++.++|+|..+|..++.+...
T Consensus 161 eL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 161 ELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKD 229 (320)
T ss_pred HHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhc
Confidence 99999999999999999999999999876 333 578888899999999999999999888754
No 77
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.87 E-value=6.3e-08 Score=86.64 Aligned_cols=104 Identities=18% Similarity=0.200 Sum_probs=93.5
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008613 67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 146 (559)
Q Consensus 67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~ 146 (559)
.++....+-.+|..+...|+.+.|++.|.++|.+.|..++ +|+|++++|.-.|+.++|++++++++++.-+
T Consensus 39 ~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raS---------ayNNRAQa~RLq~~~e~ALdDLn~AleLag~ 109 (175)
T KOG4555|consen 39 AIKASRELELKAIALAEAGDLDGALELFGQALCLAPERAS---------AYNNRAQALRLQGDDEEALDDLNKALELAGD 109 (175)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchH---------hhccHHHHHHHcCChHHHHHHHHHHHHhcCc
Confidence 4455677778999999999999999999999999999876 9999999999999999999999999999665
Q ss_pred C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008613 147 N----VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP 179 (559)
Q Consensus 147 ~----~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P 179 (559)
. -.+|..||..|..+|+.+.|..||+.+-++-.
T Consensus 110 ~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 110 QTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred cchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCC
Confidence 4 35799999999999999999999999987743
No 78
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.86 E-value=3.6e-08 Score=104.56 Aligned_cols=114 Identities=11% Similarity=0.081 Sum_probs=98.5
Q ss_pred HHHHHHHhhCCChHHHHHHHHHHHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 008613 23 LKCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQ 102 (559)
Q Consensus 23 l~~a~e~l~~~~pee~~~~~~~~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p 102 (559)
...+.+.+...+.++....+.++....|.. +..+..+|.+|+..|+|++|+..|.+++.++|
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~------------------~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P 67 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNN------------------AELYADRAQANIKLGNFTEAVADANKAIELDP 67 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 344555666677777777777777777776 78899999999999999999999999999999
Q ss_pred CCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 008613 103 GIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGR 163 (559)
Q Consensus 103 ~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~ 163 (559)
.++. +|+++|.+|+.+|+|++|+.+|+++++++|++..++..++.+...+..
T Consensus 68 ~~~~---------a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~ 119 (356)
T PLN03088 68 SLAK---------AYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAE 119 (356)
T ss_pred CCHH---------HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 8765 899999999999999999999999999999999999999888777743
No 79
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.86 E-value=7.2e-08 Score=89.69 Aligned_cols=108 Identities=12% Similarity=0.051 Sum_probs=91.3
Q ss_pred HHHhcCC-HHHHHHHH----HHhhCCChHHHHHHHHHHHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCH
Q 008613 13 ENMKNMR-PEDLKCAA----EQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRF 87 (559)
Q Consensus 13 e~mk~m~-pedl~~a~----e~l~~~~pee~~~~~~~~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y 87 (559)
..+.++. +|+|+.++ .....++.++......-+...+|+. +..|+.+|.++-..|+|
T Consensus 24 ~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~------------------~~y~~gLG~~~Q~~g~~ 85 (157)
T PRK15363 24 RMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS------------------FDYWFRLGECCQAQKHW 85 (157)
T ss_pred HHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc------------------HHHHHHHHHHHHHHhhH
Confidence 3456677 77777643 3556677777777777777776766 99999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008613 88 SNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN 147 (559)
Q Consensus 88 ~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~ 147 (559)
.+||..|.+|+.+.|++|. .++|+|.||+.+|+.+.|.+.|+.||.+.-.+
T Consensus 86 ~~AI~aY~~A~~L~~ddp~---------~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~ 136 (157)
T PRK15363 86 GEAIYAYGRAAQIKIDAPQ---------APWAAAECYLACDNVCYAIKALKAVVRICGEV 136 (157)
T ss_pred HHHHHHHHHHHhcCCCCch---------HHHHHHHHHHHcCCHHHHHHHHHHHHHHhccC
Confidence 9999999999999999988 99999999999999999999999999886433
No 80
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.84 E-value=1.2e-07 Score=110.22 Aligned_cols=105 Identities=8% Similarity=-0.035 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008613 72 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKAL 151 (559)
Q Consensus 72 ~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal 151 (559)
..+..++..+...|++++|+..|.+++...|.++. +++++|.++...|++++|++.++++++++|++..++
T Consensus 360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~---------l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~ 430 (765)
T PRK10049 360 QGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQG---------LRIDYASVLQARGWPRAAENELKKAEVLEPRNINLE 430 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHH
Confidence 34556777777777777777777777777777654 777777777777777777777777777777777777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008613 152 YRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIA 185 (559)
Q Consensus 152 ~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~ 185 (559)
+.+|.++..+++|++|...++++++.+|+++.+.
T Consensus 431 ~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 431 VEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 7777777777777777777777777777776543
No 81
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.83 E-value=1.2e-07 Score=87.54 Aligned_cols=102 Identities=22% Similarity=0.183 Sum_probs=85.9
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008613 67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 146 (559)
Q Consensus 67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~ 146 (559)
..........+|..++..|+|++|+..|.+++...++ ..+...+.++++.|++..|+|++|+..+.. +.-.+-
T Consensus 44 s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d------~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~ 116 (145)
T PF09976_consen 44 SPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPD------PELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAF 116 (145)
T ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcch
Confidence 3344777888999999999999999999999996533 234567899999999999999999999966 333444
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008613 147 NVKALYRRGQAYKDIGRLEEAVSDLSNAH 175 (559)
Q Consensus 147 ~~kal~~rG~A~~~lg~~eeAi~dlekAl 175 (559)
.+.++..+|.+|...|++++|+..|++|+
T Consensus 117 ~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 117 KALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 57889999999999999999999999875
No 82
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.81 E-value=1.5e-07 Score=100.21 Aligned_cols=131 Identities=16% Similarity=0.118 Sum_probs=95.5
Q ss_pred HHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHH
Q 008613 56 MRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIK 135 (559)
Q Consensus 56 a~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~ 135 (559)
+..-++.-+...++++-.+-..+..+++.+++.+|++.|++++.+.|..+. ++.++|.+|++.|++.+||.
T Consensus 325 A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~---------l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 325 ALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPL---------LQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccH---------HHHHHHHHHHhcCChHHHHH
Confidence 334444444455556666777778888888888888888888888777654 77788888888888888888
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008613 136 VGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 195 (559)
Q Consensus 136 ~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l 195 (559)
.....+.-+|+++..|..++++|..+|+..+|+..+-..+.+.-+...+...+..++++.
T Consensus 396 ~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 396 ILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 888888888888888888888888888877777777777777766666666655555554
No 83
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.79 E-value=8.3e-08 Score=102.19 Aligned_cols=125 Identities=18% Similarity=0.075 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008613 68 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN 147 (559)
Q Consensus 68 ~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~ 147 (559)
+.....++..+..++..|++++|...++..+...|+++. ++.-++.++++.+++.+|++.+.+++.++|+.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~---------~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~ 373 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPY---------YLELAGDILLEANKAKEAIERLKKALALDPNS 373 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc
Confidence 345778888999999999999999999999999998864 77778999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCC
Q 008613 148 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH 201 (559)
Q Consensus 148 ~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~ 201 (559)
+...+++|.+|...|++.+|+..+++.+.-+|+|+..|..|..++..+++..++
T Consensus 374 ~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a 427 (484)
T COG4783 374 PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEA 427 (484)
T ss_pred cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHH
Confidence 999999999999999999999999999999999999999999999999766553
No 84
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.77 E-value=1.4e-08 Score=80.15 Aligned_cols=64 Identities=19% Similarity=0.222 Sum_probs=58.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008613 76 KQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV 148 (559)
Q Consensus 76 ~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ 148 (559)
.+|..++..|+|++|+..|+++++..|.++. +|+.+|.|+..+|+|++|+..|+++++++|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~---------a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPE---------AWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHH---------HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 5799999999999999999999999888755 999999999999999999999999999999985
No 85
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.77 E-value=2.4e-07 Score=93.13 Aligned_cols=124 Identities=14% Similarity=0.134 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--
Q 008613 70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN-- 147 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~-- 147 (559)
.++.++..|..++..|+|++|++.|.+++...|..+ +...+.+++|.+|++.++|++|+..+++.+++.|++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~------~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~ 104 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGP------YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN 104 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc
Confidence 366788899999999999999999999999877653 355678899999999999999999999999999987
Q ss_pred -HHHHHHHHHHHHHcCC------------------HHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHhhc
Q 008613 148 -VKALYRRGQAYKDIGR------------------LEEAVSDLSNAHEVSPDD---GTIADVLRDAKEILMKED 199 (559)
Q Consensus 148 -~kal~~rG~A~~~lg~------------------~eeAi~dlekAl~l~P~~---~~a~~~L~~a~~~l~~~~ 199 (559)
+.++|.+|.++..+++ ..+|+..|++.+...|+. +++...+..++.++.+++
T Consensus 105 ~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e 178 (243)
T PRK10866 105 IDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYE 178 (243)
T ss_pred hHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHH
Confidence 4689999999766641 357889999999999987 467777777877776554
No 86
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.76 E-value=2.8e-07 Score=90.03 Aligned_cols=123 Identities=16% Similarity=0.213 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH-
Q 008613 70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV- 148 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~- 148 (559)
.++.++..|..++..|+|.+|+..|++.+...|..+. ...+.+.+|.+|++.++|.+|+..+++.++..|+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~------a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~ 77 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPY------APQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK 77 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTT------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc
Confidence 3678999999999999999999999999999887653 567899999999999999999999999999999874
Q ss_pred --HHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHhh
Q 008613 149 --KALYRRGQAYKDIG-----------RLEEAVSDLSNAHEVSPDDG---TIADVLRDAKEILMKE 198 (559)
Q Consensus 149 --kal~~rG~A~~~lg-----------~~eeAi~dlekAl~l~P~~~---~a~~~L~~a~~~l~~~ 198 (559)
.++|.+|.++..+. ...+|+..|+..+...|+.+ .+...+..+...+.++
T Consensus 78 ~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~ 143 (203)
T PF13525_consen 78 ADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEH 143 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHH
Confidence 68999999987654 34589999999999999874 5666677777777554
No 87
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.75 E-value=2.2e-07 Score=85.13 Aligned_cols=110 Identities=18% Similarity=0.264 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH--
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV-- 148 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~-- 148 (559)
+..++..|...++.|+|.+|++.|.......|..+ +...+.+.++.+|++.++|++|+..+++-|+++|+++
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~------ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGE------YAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCc------ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 56788999999999999999999999888766543 3456888999999999999999999999999999985
Q ss_pred -HHHHHHHHHHHHcCC---------------HHHHHHHHHHHHHhCCCCHHHHH
Q 008613 149 -KALYRRGQAYKDIGR---------------LEEAVSDLSNAHEVSPDDGTIAD 186 (559)
Q Consensus 149 -kal~~rG~A~~~lg~---------------~eeAi~dlekAl~l~P~~~~a~~ 186 (559)
-++|.+|.++..... ..+|+.+|++.+...|+++-+..
T Consensus 84 dYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~d 137 (142)
T PF13512_consen 84 DYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAAD 137 (142)
T ss_pred cHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence 589999999999987 89999999999999999865543
No 88
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.72 E-value=6.3e-08 Score=78.01 Aligned_cols=69 Identities=30% Similarity=0.497 Sum_probs=64.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008613 121 MSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLR 189 (559)
Q Consensus 121 A~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~ 189 (559)
..+|+..++|++|++.+++++.++|+++..|+.+|.+|..+|+|++|+.+|+++++++|+++.+.....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 568899999999999999999999999999999999999999999999999999999999987665443
No 89
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.69 E-value=2.2e-08 Score=102.12 Aligned_cols=133 Identities=17% Similarity=0.099 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008613 70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK 149 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~k 149 (559)
....+......+...++|+++...+.++....+... ...+|+.+|.||.+.|++++|+.+|+++|+++|++..
T Consensus 109 ~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-------~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~ 181 (280)
T PF13429_consen 109 DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPD-------SARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPD 181 (280)
T ss_dssp ---------H-HHHTT-HHHHHHHHHHHHH-T---T--------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HH
T ss_pred ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence 456666777789999999999999999876432111 2448999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613 150 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 209 (559)
Q Consensus 150 al~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i 209 (559)
++..++.++...|+++++...++......|+++.++..++.+...+++.+.+...+++.+
T Consensus 182 ~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~ 241 (280)
T PF13429_consen 182 ARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKAL 241 (280)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccc
Confidence 999999999999999999999999888889998899999999999988777655555544
No 90
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.64 E-value=5e-07 Score=81.01 Aligned_cols=99 Identities=21% Similarity=0.070 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CH
Q 008613 72 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK---NV 148 (559)
Q Consensus 72 ~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~---~~ 148 (559)
..+++.+.++-..|+.++|+.+|.+++......+ ....++.++|.+|..+|++++|+..+++++...|+ +.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~------~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~ 75 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGA------DRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNA 75 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccH
Confidence 4678899999999999999999999999644432 24558899999999999999999999999999888 78
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008613 149 KALYRRGQAYKDIGRLEEAVSDLSNAHE 176 (559)
Q Consensus 149 kal~~rG~A~~~lg~~eeAi~dlekAl~ 176 (559)
.....++.++..+|+++||+..+-.++.
T Consensus 76 ~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 76 ALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8888899999999999999999988775
No 91
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.64 E-value=7.3e-07 Score=101.19 Aligned_cols=170 Identities=17% Similarity=0.140 Sum_probs=132.1
Q ss_pred HHHHHHHHHHhhCCChHHHHHHHH----HHHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008613 20 PEDLKCAAEQLTHTPPEEVAEIGE----KLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYL 95 (559)
Q Consensus 20 pedl~~a~e~l~~~~pee~~~~~~----~~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~ 95 (559)
++...-+.+.....+|..+.++.. .+.....+-+.-+...+++.+..+...+..+.-+++.+|-.|+|..+..++.
T Consensus 215 ~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~ 294 (1018)
T KOG2002|consen 215 SEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAE 294 (1018)
T ss_pred hhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHH
Confidence 344444555555556654443322 1222233334555566666666677778899999999999999999999999
Q ss_pred HHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008613 96 LAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN-VKALYRRGQAYKDIGRLEEAVSDLSNA 174 (559)
Q Consensus 96 kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~-~kal~~rG~A~~~lg~~eeAi~dlekA 174 (559)
.++..... ..+.+..+|++|.+|..+|+|++|..+|.++++.+|++ .-.++.+|+.|...|++++|+.+|+++
T Consensus 295 ~ai~~t~~------~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv 368 (1018)
T KOG2002|consen 295 HAIKNTEN------KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKV 368 (1018)
T ss_pred HHHHhhhh------hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHH
Confidence 99986433 33466679999999999999999999999999999998 888999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHH
Q 008613 175 HEVSPDDGTIADVLRDAKEIL 195 (559)
Q Consensus 175 l~l~P~~~~a~~~L~~a~~~l 195 (559)
++..|++.+....|+-++...
T Consensus 369 ~k~~p~~~etm~iLG~Lya~~ 389 (1018)
T KOG2002|consen 369 LKQLPNNYETMKILGCLYAHS 389 (1018)
T ss_pred HHhCcchHHHHHHHHhHHHhh
Confidence 999999999888888876665
No 92
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.63 E-value=3.8e-07 Score=102.76 Aligned_cols=102 Identities=14% Similarity=0.155 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 150 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka 150 (559)
+..+..++|.+|.+|++++|...+.++|+.+|..+. +|+.+|.||..+|+.++|+.....|-.++|.+...
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~---------ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~ 209 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPI---------AYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYEL 209 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchh---------hHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHH
Confidence 555566666666666666666666666666665544 55555555555555555555444444445544444
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008613 151 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181 (559)
Q Consensus 151 l~~rG~A~~~lg~~eeAi~dlekAl~l~P~~ 181 (559)
|.+++.-...+|++++|+-+|.+|++.+|.+
T Consensus 210 W~~ladls~~~~~i~qA~~cy~rAI~~~p~n 240 (895)
T KOG2076|consen 210 WKRLADLSEQLGNINQARYCYSRAIQANPSN 240 (895)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCCcc
Confidence 5555544445555555555555555544444
No 93
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.61 E-value=4e-07 Score=101.16 Aligned_cols=117 Identities=17% Similarity=0.147 Sum_probs=104.4
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHH--
Q 008613 58 ARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIK-- 135 (559)
Q Consensus 58 ~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~-- 135 (559)
.+++......+--+..|+..|.++..+|++.+|.+.|..|+.++|+++. +...+|.||++.|+..-|..
T Consensus 671 ~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~---------s~~Ala~~lle~G~~~la~~~~ 741 (799)
T KOG4162|consen 671 SCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVP---------SMTALAELLLELGSPRLAEKRS 741 (799)
T ss_pred HHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcH---------HHHHHHHHHHHhCCcchHHHHH
Confidence 4444444445666888999999999999999999999999999999977 88899999999998888887
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008613 136 VGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT 183 (559)
Q Consensus 136 ~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~ 183 (559)
....++++||.+.++||.+|.++..+|+.++|.++|..|+.+++.+|.
T Consensus 742 ~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 742 LLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 999999999999999999999999999999999999999999988764
No 94
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=1.8e-06 Score=85.35 Aligned_cols=128 Identities=14% Similarity=0.059 Sum_probs=100.8
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 008613 58 ARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVG 137 (559)
Q Consensus 58 ~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~ 137 (559)
++++.++ +.-....+-+|..+-..|+|++|+++|...|+-+|.+.. +|-+.-.+...+|+--+||+..
T Consensus 76 ~~L~~~f---p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v---------~~KRKlAilka~GK~l~aIk~l 143 (289)
T KOG3060|consen 76 NQLRDRF---PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTV---------IRKRKLAILKAQGKNLEAIKEL 143 (289)
T ss_pred HHHHHhC---CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhH---------HHHHHHHHHHHcCCcHHHHHHH
Confidence 4444443 444556677889999999999999999999998877643 5555566666778888888888
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 008613 138 SEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 197 (559)
Q Consensus 138 ~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~ 197 (559)
..-++..+.+..+|..++..|...|+|+.|+-+|+..+-+.|.++-...+++++..-++.
T Consensus 144 n~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg 203 (289)
T KOG3060|consen 144 NEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG 203 (289)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh
Confidence 888888888888888888888888888888888888888888888888888887776654
No 95
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.60 E-value=1e-06 Score=88.45 Aligned_cols=110 Identities=16% Similarity=0.183 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---H
Q 008613 72 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN---V 148 (559)
Q Consensus 72 ~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~---~ 148 (559)
+.+++.+-.+++.|+|.+|...|.+-|+.-|... +...++|.||.|++.+|+|++|...|..+++-.|++ +
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~------~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KAp 215 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNST------YTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAP 215 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc------ccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCCh
Confidence 5589999999999999999999999999877654 345699999999999999999999999999988876 5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008613 149 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADV 187 (559)
Q Consensus 149 kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~ 187 (559)
.+++.+|.+...+|+.++|...|+++++..|+.+.+...
T Consensus 216 dallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 216 DALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 789999999999999999999999999999998766543
No 96
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.59 E-value=2.5e-07 Score=74.43 Aligned_cols=70 Identities=14% Similarity=0.126 Sum_probs=64.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008613 78 GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQ 156 (559)
Q Consensus 78 Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~ 156 (559)
...|+..++|++|++++++++.++|.++. +|+.+|.||.++|+|.+|+.+++++++++|+++.+...++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~---------~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPE---------LWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccch---------hhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 46789999999999999999999999877 99999999999999999999999999999999887766543
No 97
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.59 E-value=2.4e-07 Score=74.51 Aligned_cols=85 Identities=32% Similarity=0.385 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008613 116 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 195 (559)
Q Consensus 116 ~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l 195 (559)
+++++|.++...|++++|+..+.+++++.|.+..+++.+|.++...+++++|+..|++++.+.|.+..++..++.+....
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999988888888887777
Q ss_pred HhhcC
Q 008613 196 MKEDG 200 (559)
Q Consensus 196 ~~~~~ 200 (559)
++...
T Consensus 82 ~~~~~ 86 (100)
T cd00189 82 GKYEE 86 (100)
T ss_pred HhHHH
Confidence 65543
No 98
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.59 E-value=2.3e-07 Score=87.52 Aligned_cols=113 Identities=13% Similarity=0.040 Sum_probs=94.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHH
Q 008613 78 GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN---VKALYRR 154 (559)
Q Consensus 78 Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~---~kal~~r 154 (559)
.+.+|-.+.|..+...+.+.++.... .....+|+++|.++...++|++|+..|++++.+.|+. +.+|+++
T Consensus 6 ~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~l 78 (168)
T CHL00033 6 RNDNFIDKTFTIVADILLRILPTTSG-------EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNI 78 (168)
T ss_pred ccccccccccccchhhhhHhccCCch-------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHH
Confidence 45566777788888888666543332 2356799999999999999999999999999997763 4589999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 008613 155 GQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 197 (559)
Q Consensus 155 G~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~ 197 (559)
|.+|...|++++|+..|++++.++|.+...+..++.+...+++
T Consensus 79 g~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~ 121 (168)
T CHL00033 79 GLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGE 121 (168)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhH
Confidence 9999999999999999999999999999988888888886654
No 99
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.58 E-value=1.6e-07 Score=74.53 Aligned_cols=67 Identities=27% Similarity=0.356 Sum_probs=61.5
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008613 124 YLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD 190 (559)
Q Consensus 124 ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~ 190 (559)
+++.|+|++|+..|++++..+|++..+++.++.+|...|++++|...+++++..+|+++.++..+..
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 3578999999999999999999999999999999999999999999999999999999888776654
No 100
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.56 E-value=5e-07 Score=102.47 Aligned_cols=131 Identities=20% Similarity=0.255 Sum_probs=111.8
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008613 60 IDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSE 139 (559)
Q Consensus 60 l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~ 139 (559)
..+.++..+.+.-+-...|.++...|+|.+|++.|.++.+....+++ +|.|+|.||+.+|+|..||+.|+.
T Consensus 635 y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~d---------v~lNlah~~~e~~qy~~AIqmYe~ 705 (1018)
T KOG2002|consen 635 YGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFED---------VWLNLAHCYVEQGQYRLAIQMYEN 705 (1018)
T ss_pred HHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCc---------eeeeHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555556666888899999999999999988877665655 899999999999999999999999
Q ss_pred HHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 008613 140 VLAY--DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED 199 (559)
Q Consensus 140 AL~l--dP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~ 199 (559)
+++. ..+++..+..+|.+|+..+.|.+|...+.+|+.+.|.++.+..+++.+..++...-
T Consensus 706 ~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~ 767 (1018)
T KOG2002|consen 706 CLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESI 767 (1018)
T ss_pred HHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHH
Confidence 9975 34679999999999999999999999999999999999999999999988886653
No 101
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.54 E-value=1.4e-07 Score=74.81 Aligned_cols=67 Identities=25% Similarity=0.297 Sum_probs=60.3
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008613 81 LYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQ 156 (559)
Q Consensus 81 ~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~ 156 (559)
+++.|+|++|+..|.+++...|.+.. +++.++.||++.|++++|...+.+++..+|+++.++.-++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~---------~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPE---------ARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHH---------HHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 46889999999999999999999865 89999999999999999999999999999999887776654
No 102
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.54 E-value=2.4e-06 Score=99.35 Aligned_cols=115 Identities=12% Similarity=0.048 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 150 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka 150 (559)
...+...|..+...|+|++|++.|+++++.+|.++. +++.++.+|...+++++|+..+.+++.++|++...
T Consensus 102 ~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~---------~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~ 172 (822)
T PRK14574 102 SRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPD---------LISGMIMTQADAGRGGVVLKQATELAERDPTVQNY 172 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---------HHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH
Confidence 555666688999999999999999999999999876 77788999999999999999999999999996554
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008613 151 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 195 (559)
Q Consensus 151 l~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l 195 (559)
..++.++...+++.+|+..|+++++++|++..+...+-.+...+
T Consensus 173 -l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~ 216 (822)
T PRK14574 173 -MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRN 216 (822)
T ss_pred -HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 55566666688887899999999999999988877666654444
No 103
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.54 E-value=2.9e-06 Score=95.82 Aligned_cols=104 Identities=15% Similarity=0.148 Sum_probs=100.0
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008613 67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 146 (559)
Q Consensus 67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~ 146 (559)
.+.....|+.+|.+|-.+|+..+|+.....|-.++|.+.+ .|..++....++|.++.|+-+|++||.++|.
T Consensus 169 dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e---------~W~~ladls~~~~~i~qA~~cy~rAI~~~p~ 239 (895)
T KOG2076|consen 169 DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYE---------LWKRLADLSEQLGNINQARYCYSRAIQANPS 239 (895)
T ss_pred CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChH---------HHHHHHHHHHhcccHHHHHHHHHHHHhcCCc
Confidence 4444999999999999999999999999999999999976 9999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008613 147 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP 179 (559)
Q Consensus 147 ~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P 179 (559)
+.+.+++|...|.+.|++..|...|.+.+.++|
T Consensus 240 n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 240 NWELIYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999999999999
No 104
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.53 E-value=9.7e-07 Score=87.70 Aligned_cols=120 Identities=17% Similarity=0.187 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 150 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka 150 (559)
... ....+.++-.|+-+.++.+..+++...+.+.. ++.-.+......|+|.+|+..+.++..++|+++++
T Consensus 67 ~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~---------ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~ 136 (257)
T COG5010 67 LSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRE---------LLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEA 136 (257)
T ss_pred HHH-HHHHHHHHhcccccchHHHHhhhhccCcccHH---------HHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhh
Confidence 444 66778888888888888888887776666643 55558899999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcC
Q 008613 151 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG 200 (559)
Q Consensus 151 l~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~ 200 (559)
|.-+|.+|..+|++++|...|.+++++.|+++.+..+++.....-++.+.
T Consensus 137 ~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~ 186 (257)
T COG5010 137 WNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLED 186 (257)
T ss_pred hhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999999999988776655443
No 105
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.53 E-value=2.1e-06 Score=89.93 Aligned_cols=100 Identities=12% Similarity=-0.032 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH--
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV-- 148 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~-- 148 (559)
...+...|.++...|+|++|+..|++++++.|.++. ++..++.+|...|++++|+..+.+++...|..+
T Consensus 114 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~---------~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~ 184 (355)
T cd05804 114 WYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAW---------AVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSML 184 (355)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcH---------HHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcch
Confidence 445567888999999999999999999999999865 889999999999999999999999999887432
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008613 149 --KALYRRGQAYKDIGRLEEAVSDLSNAHEVSP 179 (559)
Q Consensus 149 --kal~~rG~A~~~lg~~eeAi~dlekAl~l~P 179 (559)
..|+.++.+|...|++++|+..|++++...|
T Consensus 185 ~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 185 RGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 4577899999999999999999999987776
No 106
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.52 E-value=2.6e-07 Score=98.69 Aligned_cols=69 Identities=10% Similarity=0.007 Sum_probs=64.1
Q ss_pred hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613 109 GRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA---LYRRGQAYKDIGRLEEAVSDLSNAHEV 177 (559)
Q Consensus 109 ~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka---l~~rG~A~~~lg~~eeAi~dlekAl~l 177 (559)
...-....|+|+|.+|+++|+|++|+..|+++|+++|++..+ ||++|.+|..+|++++|+.+|++|+++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344466799999999999999999999999999999999865 999999999999999999999999997
No 107
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.49 E-value=6.8e-07 Score=77.81 Aligned_cols=94 Identities=18% Similarity=0.174 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHH
Q 008613 116 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN---VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD---GTIADVLR 189 (559)
Q Consensus 116 ~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~---~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~---~~a~~~L~ 189 (559)
.++.+|.++.+.|+|++|+..|.+++..+|++ +.+++.+|.++...+++++|+..|++++..+|++ ..++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 78999999999999999999999999999887 6799999999999999999999999999999986 56777888
Q ss_pred HHHHHHHhhcCCCCCccchh
Q 008613 190 DAKEILMKEDGHHGPRGLLI 209 (559)
Q Consensus 190 ~a~~~l~~~~~~~~~~~~~i 209 (559)
.+...+++...+...+...+
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~ 103 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVI 103 (119)
T ss_pred HHHHHhCChHHHHHHHHHHH
Confidence 88777766555444444333
No 108
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.48 E-value=2.3e-06 Score=99.52 Aligned_cols=130 Identities=13% Similarity=0.028 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHH
Q 008613 53 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE 132 (559)
Q Consensus 53 ~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~e 132 (559)
+..+...++..++..+..+..+......+...|++++|+.++++++ .|.... ...+..+|.+|...|+|++
T Consensus 50 ~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~-------~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 50 TAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNIS-------SRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCC-------HHHHHHHHHHHHHcCCHHH
Confidence 3344455555555444444333367777778899999999999999 444333 2244555889999999999
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008613 133 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAK 192 (559)
Q Consensus 133 Ai~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~ 192 (559)
|++.|+++++++|+++.+++.++.+|...+++++|+..+++++.++|++... ..+..+.
T Consensus 121 Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~ 179 (822)
T PRK14574 121 ALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLN 179 (822)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHH
Confidence 9999999999999999999999999999999999999999999999986554 3334343
No 109
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.48 E-value=8.5e-07 Score=90.73 Aligned_cols=93 Identities=18% Similarity=0.099 Sum_probs=86.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008613 117 SLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM 196 (559)
Q Consensus 117 ~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~ 196 (559)
+-.+|.-|+++|+|++||.+|.+++.++|.|+..|.+|+.+|+.+++|..|..||+.|+.++-.+..++.+...+.+.|+
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 34689999999999999999999999999999999999999999999999999999999999989999999999999998
Q ss_pred hhcCCCCCccchh
Q 008613 197 KEDGHHGPRGLLI 209 (559)
Q Consensus 197 ~~~~~~~~~~~~i 209 (559)
...++.+.++.++
T Consensus 180 ~~~EAKkD~E~vL 192 (536)
T KOG4648|consen 180 NNMEAKKDCETVL 192 (536)
T ss_pred hHHHHHHhHHHHH
Confidence 8888877777776
No 110
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.47 E-value=2.7e-06 Score=91.94 Aligned_cols=133 Identities=14% Similarity=-0.001 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008613 69 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV 148 (559)
Q Consensus 69 ~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ 148 (559)
+....+...+..+...|++++|++.+.++++..|++... ....-+...++..++..++++.++++++.+|+++
T Consensus 261 ~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~-------~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~ 333 (409)
T TIGR00540 261 HNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAI-------SLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKP 333 (409)
T ss_pred CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccc-------hhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCCh
Confidence 367888899999999999999999999999998887530 0112233444456889999999999999999999
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613 149 --KALYRRGQAYKDIGRLEEAVSDLS--NAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 209 (559)
Q Consensus 149 --kal~~rG~A~~~lg~~eeAi~dle--kAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i 209 (559)
..+..+|.++...|+|++|.++|+ .+++.+|++.. ...++.+...+++..++..-+++.+
T Consensus 334 ~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 334 KCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888899999999999999999999 68888998766 4589999998887776655555443
No 111
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.47 E-value=9.1e-07 Score=72.29 Aligned_cols=73 Identities=18% Similarity=0.225 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008613 69 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY 143 (559)
Q Consensus 69 ~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l 143 (559)
..+..+..+|.+|+..|+|++|+++|.+++++....+. .....+.+++++|.||..+|++++|++.+++++++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD--DHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34788999999999999999999999999998544433 34456889999999999999999999999999976
No 112
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.46 E-value=2.5e-06 Score=78.64 Aligned_cols=133 Identities=17% Similarity=0.077 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008613 68 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN 147 (559)
Q Consensus 68 ~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~ 147 (559)
...+...+......+..+++..+...+.+.+.-.|..+ +...+++.+|.+++..|+|++|+..|..++...|+.
T Consensus 8 ~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~------ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~ 81 (145)
T PF09976_consen 8 AEQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSP------YAALAALQLAKAAYEQGDYDEAKAALEKALANAPDP 81 (145)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCH
Confidence 33466677777777889999999998999988766652 355688899999999999999999999999987665
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccc
Q 008613 148 ---VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGL 207 (559)
Q Consensus 148 ---~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~ 207 (559)
..+.++++.++...|+|++|+..++.. .-.+-.+.++..++.+....++..++...|+.
T Consensus 82 ~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 82 ELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 468999999999999999999999763 33334567888889998888777666555543
No 113
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.46 E-value=3.3e-06 Score=92.75 Aligned_cols=145 Identities=18% Similarity=0.125 Sum_probs=118.7
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--
Q 008613 67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD-- 144 (559)
Q Consensus 67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ld-- 144 (559)
.+..+..++..|..|...++|.+|+..|.+||.+....-. +.+.-.+.++.|+|.+|.+.|+|++|..+|++|++|-
T Consensus 237 hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G-~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~ 315 (508)
T KOG1840|consen 237 HLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFG-EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEK 315 (508)
T ss_pred CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH
Confidence 4445666778999999999999999999999998653321 2244578899999999999999999999999999862
Q ss_pred ------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHHHhhcCCCCCccchhh
Q 008613 145 ------AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS-----PDD---GTIADVLRDAKEILMKEDGHHGPRGLLIE 210 (559)
Q Consensus 145 ------P~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~-----P~~---~~a~~~L~~a~~~l~~~~~~~~~~~~~i~ 210 (559)
|+-...+...+.++...+++++|+..|++++++. +++ ..+...|+.+....++.+++..-++++|.
T Consensus 316 ~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~ 395 (508)
T KOG1840|consen 316 LLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQ 395 (508)
T ss_pred hhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 3345789999999999999999999999999974 233 56888899999999888887777777774
Q ss_pred hh
Q 008613 211 EI 212 (559)
Q Consensus 211 e~ 212 (559)
..
T Consensus 396 ~~ 397 (508)
T KOG1840|consen 396 IL 397 (508)
T ss_pred HH
Confidence 43
No 114
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.43 E-value=2.1e-06 Score=81.43 Aligned_cols=88 Identities=15% Similarity=0.131 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008613 113 LLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN---VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLR 189 (559)
Q Consensus 113 ~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~---~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~ 189 (559)
...+++++|.+|...|+|++|+.+|.+++++.|+. ..+++.+|.+|..+|++++|+..|++++.++|++...+..++
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 113 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA 113 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 45689999999999999999999999999987764 579999999999999999999999999999999999988888
Q ss_pred HHHHHHHhhcC
Q 008613 190 DAKEILMKEDG 200 (559)
Q Consensus 190 ~a~~~l~~~~~ 200 (559)
.+...+++...
T Consensus 114 ~~~~~~g~~~~ 124 (172)
T PRK02603 114 VIYHKRGEKAE 124 (172)
T ss_pred HHHHHcCChHh
Confidence 88877765433
No 115
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=2.5e-07 Score=95.24 Aligned_cols=135 Identities=27% Similarity=0.340 Sum_probs=118.3
Q ss_pred HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCC----------chhhhhHHHHHHHHHHHHHHcCCHHHHHH
Q 008613 66 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS----------SEGRTLLLACSLNSMSCYLKTKQYDECIK 135 (559)
Q Consensus 66 ~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~----------~e~~~l~~~~~~nlA~~ylklg~y~eAi~ 135 (559)
......+..++.|+..++.++|..|+..|.+++++....+. .....+...++.|++.|-++.+.|..|+.
T Consensus 217 ~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~ 296 (372)
T KOG0546|consen 217 KALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARF 296 (372)
T ss_pred hhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCccee
Confidence 35556788899999999999999999999999987663221 11345667789999999999999999999
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcC
Q 008613 136 VGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG 200 (559)
Q Consensus 136 ~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~ 200 (559)
.+..+++.++...++||+++.+|..+.++++|+.+++.+....|++..+...+..+...+.+..+
T Consensus 297 ~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~~ 361 (372)
T KOG0546|consen 297 RTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYNR 361 (372)
T ss_pred ccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988887766543
No 116
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.43 E-value=1.3e-06 Score=82.71 Aligned_cols=99 Identities=21% Similarity=0.184 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008613 87 FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT----------KQYDECIKVGSEVLAYDAKNVKALYRRGQ 156 (559)
Q Consensus 87 y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylkl----------g~y~eAi~~~~~AL~ldP~~~kal~~rG~ 156 (559)
|+.|.+.|......+|.+++ .++|-|.+++++ .-+++||..|++||.|+|+...+++.+|.
T Consensus 7 FE~ark~aea~y~~nP~Dad---------nL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGn 77 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDAD---------NLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGN 77 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HH---------HHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHH---------HHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 67899999999999999865 677777777666 34678999999999999999999999999
Q ss_pred HHHHcCC-----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008613 157 AYKDIGR-----------LEEAVSDLSNAHEVSPDDGTIADVLRDAKEI 194 (559)
Q Consensus 157 A~~~lg~-----------~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~ 194 (559)
+|..++. |++|..+|++|+.++|++...+..|..+.+.
T Consensus 78 A~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~ka 126 (186)
T PF06552_consen 78 AYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAKA 126 (186)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHTH
T ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhh
Confidence 9988864 8889999999999999999888888776543
No 117
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.42 E-value=4.6e-07 Score=92.20 Aligned_cols=170 Identities=16% Similarity=0.104 Sum_probs=117.6
Q ss_pred CHHHHHHHHHHhhCCC-hHHHHHHHHHHHccCcHHHHHHH--HHHHHHhHHhHHHHHHHHH--------------HHHHH
Q 008613 19 RPEDLKCAAEQLTHTP-PEEVAEIGEKLANASPEEIATMR--ARIDAQMNYEFNAAKMLKK--------------QGNEL 81 (559)
Q Consensus 19 ~pedl~~a~e~l~~~~-pee~~~~~~~~~~~~pee~~aa~--~~l~~~~~~~~~~a~~lk~--------------~Gn~~ 81 (559)
.||-+.-+.......+ |+-......+-..-.|.++.-.. .+.+.......+.++.++. .|.-|
T Consensus 255 ~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~y 334 (478)
T KOG1129|consen 255 HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGY 334 (478)
T ss_pred chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeecc
Confidence 3455555555444443 55555555555556677633222 2222222222222222222 23346
Q ss_pred HHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CC-CHHHHHHHHHHH
Q 008613 82 YSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD--AK-NVKALYRRGQAY 158 (559)
Q Consensus 82 ~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ld--P~-~~kal~~rG~A~ 158 (559)
|-.++.+-|+.+|++.|+.--..|+ +++|+|.|.+-.++|+-++..+.+|+..- |+ -+..||++|.+.
T Consensus 335 fY~~~PE~AlryYRRiLqmG~~spe---------Lf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~va 405 (478)
T KOG1129|consen 335 FYDNNPEMALRYYRRILQMGAQSPE---------LFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVA 405 (478)
T ss_pred ccCCChHHHHHHHHHHHHhcCCChH---------HHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeE
Confidence 6667777777777777776655555 89999999999999999999999999763 33 468999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 008613 159 KDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 197 (559)
Q Consensus 159 ~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~ 197 (559)
...|++.-|..+|+-+|..+|+|.+++.+|+.+.-+-++
T Consensus 406 V~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~ 444 (478)
T KOG1129|consen 406 VTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGD 444 (478)
T ss_pred EeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCc
Confidence 999999999999999999999999999999888665543
No 118
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.41 E-value=3.3e-06 Score=88.40 Aligned_cols=136 Identities=11% Similarity=-0.051 Sum_probs=92.0
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHH
Q 008613 58 ARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKN-LQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKV 136 (559)
Q Consensus 58 ~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l-~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~ 136 (559)
..++..+...+.....+.. +..++..+++..+...+.+++.. .+.++. ...++..++.++...|+|++|+..
T Consensus 64 ~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~~~~~a~~~~~~G~~~~A~~~ 136 (355)
T cd05804 64 ALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPD------YWYLLGMLAFGLEEAGQYDRAEEA 136 (355)
T ss_pred HHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCC------cHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3333333333333444443 44555555554444444444432 122222 344677889999999999999999
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHHhhcC
Q 008613 137 GSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT----IADVLRDAKEILMKEDG 200 (559)
Q Consensus 137 ~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~----a~~~L~~a~~~l~~~~~ 200 (559)
|+++++++|+++.+++.+|.+|...|++++|+..|++++.+.|.++. .+..+..+....++..+
T Consensus 137 ~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~ 204 (355)
T cd05804 137 ARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEA 204 (355)
T ss_pred HHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999999999999999999999999999875432 23345555555544443
No 119
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.40 E-value=1e-06 Score=94.21 Aligned_cols=72 Identities=18% Similarity=0.163 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 008613 67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD 144 (559)
Q Consensus 67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ld 144 (559)
.+..+..+.++|..|++.|+|++|+..|+++|+++|++.. ...+|+|+|.||..+|++++|+.++.+||++.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~ae------A~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDE------AQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 4445899999999999999999999999999999999864 11369999999999999999999999999983
No 120
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.40 E-value=8.1e-07 Score=72.61 Aligned_cols=67 Identities=21% Similarity=0.288 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008613 112 LLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD-------AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS 178 (559)
Q Consensus 112 l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ld-------P~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~ 178 (559)
..+.+|.++|.+|..+|+|++|+..|++++++. |.-+.+++++|.+|..+|++++|+..|++++++.
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 356799999999999999999999999999761 2236799999999999999999999999999863
No 121
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.38 E-value=5.3e-05 Score=76.26 Aligned_cols=150 Identities=11% Similarity=-0.028 Sum_probs=111.5
Q ss_pred HHHHHHhhCCChHHHHHHHHHHHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 008613 24 KCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQG 103 (559)
Q Consensus 24 ~~a~e~l~~~~pee~~~~~~~~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~ 103 (559)
..+.+.+.+.+.++......++....|. ..........+|.++++.++|.+|+..|++.+++.|+
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~---------------s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~ 101 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPF---------------GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT 101 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC---------------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC
Confidence 4455555555555555554444444433 3334566788999999999999999999999999999
Q ss_pred CCCchhhhhHHHHHHHHHHHHHHcCC------------------HHHHHHHHHHHHHcCCCCH---H-------------
Q 008613 104 IHSSEGRTLLLACSLNSMSCYLKTKQ------------------YDECIKVGSEVLAYDAKNV---K------------- 149 (559)
Q Consensus 104 ~~~~e~~~l~~~~~~nlA~~ylklg~------------------y~eAi~~~~~AL~ldP~~~---k------------- 149 (559)
++. ...+++.+|.|+..+++ -.+|+..+++.|+..|+.. .
T Consensus 102 ~~~------~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la 175 (243)
T PRK10866 102 HPN------IDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLA 175 (243)
T ss_pred CCc------hHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHH
Confidence 986 56789999999766541 3578899999999999873 1
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008613 150 -ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI 194 (559)
Q Consensus 150 -al~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~ 194 (559)
--+..|.-|...|+|..|+.-++.+++..|+.+...+.|-.+.+.
T Consensus 176 ~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~a 221 (243)
T PRK10866 176 KYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENA 221 (243)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHH
Confidence 123457778999999999999999999999876655555444333
No 122
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.38 E-value=1.6e-05 Score=88.24 Aligned_cols=128 Identities=10% Similarity=0.029 Sum_probs=94.6
Q ss_pred HccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHh--cCCCCCchhhhhHHH
Q 008613 46 ANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEG--------RFSNALQKYLLAKKN--LQGIHSSEGRTLLLA 115 (559)
Q Consensus 46 ~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g--------~y~eAi~~Y~kAL~l--~p~~~~~e~~~l~~~ 115 (559)
...+++++..+...++..++..+..+..+-.++.+++... +...+.+...+++.+ ++.++ .
T Consensus 351 ~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~---------~ 421 (517)
T PRK10153 351 NSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLP---------R 421 (517)
T ss_pred hcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCCh---------H
Confidence 3334555556666666666655555666655555554432 233445555555554 33332 3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008613 116 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT 183 (559)
Q Consensus 116 ~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~ 183 (559)
+|.-+|..+...|++++|+..+++|+.++| ++.+|..+|.+|...|++++|+..|++|+.++|.++.
T Consensus 422 ~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 422 IYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 788888899899999999999999999999 5889999999999999999999999999999999874
No 123
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.35 E-value=1.1e-05 Score=85.17 Aligned_cols=118 Identities=15% Similarity=0.088 Sum_probs=104.9
Q ss_pred HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008613 66 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA 145 (559)
Q Consensus 66 ~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP 145 (559)
..+..+..+-.+|..|-+.|+-..|.++|-...+++|++.+ ..-.++..|+...-++++|.+++++--+.|
T Consensus 587 lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie---------~iewl~ayyidtqf~ekai~y~ekaaliqp 657 (840)
T KOG2003|consen 587 LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIE---------TIEWLAAYYIDTQFSEKAINYFEKAALIQP 657 (840)
T ss_pred cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchH---------HHHHHHHHHHhhHHHHHHHHHHHHHHhcCc
Confidence 34445788888999999999999999998888898888765 667889999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008613 146 KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAK 192 (559)
Q Consensus 146 ~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~ 192 (559)
+..+-....+.|+...|+|..|+..|+......|.+.+.+..|-.+.
T Consensus 658 ~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~ 704 (840)
T KOG2003|consen 658 NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIA 704 (840)
T ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHh
Confidence 99999999999999999999999999999999999988777776653
No 124
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.34 E-value=8.5e-06 Score=90.22 Aligned_cols=144 Identities=15% Similarity=0.116 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCc-----------------------
Q 008613 51 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSS----------------------- 107 (559)
Q Consensus 51 ee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~----------------------- 107 (559)
.++..+++.+.......++....+-.+|.++++.|++++|...|...|..+|++..+
T Consensus 18 g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~ 97 (517)
T PF12569_consen 18 GDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLL 97 (517)
T ss_pred CCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHH
Confidence 344556666766666777778888889999999999999999999988888854311
Q ss_pred ----------------------------------------------------------------------h---------
Q 008613 108 ----------------------------------------------------------------------E--------- 108 (559)
Q Consensus 108 ----------------------------------------------------------------------e--------- 108 (559)
.
T Consensus 98 ~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~ 177 (517)
T PF12569_consen 98 ELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNG 177 (517)
T ss_pred HHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccC
Confidence 0
Q ss_pred -----------hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613 109 -----------GRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV 177 (559)
Q Consensus 109 -----------~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l 177 (559)
.......+++.+|++|...|+|++|+.+++++|+..|+.+..|+.+|.+|...|++.+|..+++.|..+
T Consensus 178 ~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L 257 (517)
T PF12569_consen 178 SFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEAREL 257 (517)
T ss_pred CCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 011234577899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 008613 178 SPDDGTIADVLRDAKEI 194 (559)
Q Consensus 178 ~P~~~~a~~~L~~a~~~ 194 (559)
|+.|.-+-.......-+
T Consensus 258 D~~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 258 DLADRYINSKCAKYLLR 274 (517)
T ss_pred ChhhHHHHHHHHHHHHH
Confidence 99887665544444333
No 125
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.33 E-value=2.9e-06 Score=98.30 Aligned_cols=146 Identities=10% Similarity=0.017 Sum_probs=106.0
Q ss_pred hCCChHHHHHHHHHHHcc-CcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchh
Q 008613 31 THTPPEEVAEIGEKLANA-SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEG 109 (559)
Q Consensus 31 ~~~~pee~~~~~~~~~~~-~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~ 109 (559)
.+.+|....+...-+... ...++..+..-....+.+.+.....++-.|..++..+++.++... .++...+.......
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ 101 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI 101 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence 455565554444433333 334455566666666777777788888888888888888888777 77777666654444
Q ss_pred hhhHH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008613 110 RTLLL----------ACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP 179 (559)
Q Consensus 110 ~~l~~----------~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P 179 (559)
-...+ .+++.+|.||-++|++++|+..|+++|+++|+|+.++.++|..|... ++++|+..+.+|+...-
T Consensus 102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i 180 (906)
T PRK14720 102 VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI 180 (906)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence 44444 67788888888888888888888888888888888888888888888 88888888888888743
No 126
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.31 E-value=1.5e-05 Score=81.38 Aligned_cols=127 Identities=18% Similarity=0.107 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008613 70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK 149 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~k 149 (559)
...++..+-+.|-..++|.+||+.-.+...+.+..- .-..+.+|+.+|..++...+++.|+..+.+|+..+|++++
T Consensus 140 a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~----~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvR 215 (389)
T COG2956 140 AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTY----RVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVR 215 (389)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc----hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcccee
Confidence 456677788889999999999999888888765542 3457789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHhhcC
Q 008613 150 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD-GTIADVLRDAKEILMKEDG 200 (559)
Q Consensus 150 al~~rG~A~~~lg~~eeAi~dlekAl~l~P~~-~~a~~~L~~a~~~l~~~~~ 200 (559)
+-..+|.++...|+|+.|++.|+.+++.+|+. +++...|..++..+++..+
T Consensus 216 Asi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~ 267 (389)
T COG2956 216 ASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAE 267 (389)
T ss_pred hhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHH
Confidence 99999999999999999999999999999987 5788888888888876544
No 127
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.31 E-value=7.2e-07 Score=98.72 Aligned_cols=119 Identities=13% Similarity=0.016 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 150 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka 150 (559)
+.+.+..|+..+..++|.++.++++..++++|-... .||++|.|+++++++..|+.+|.+.+.++|++..+
T Consensus 485 arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~---------~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~ea 555 (777)
T KOG1128|consen 485 ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLG---------TWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEA 555 (777)
T ss_pred HHHHHhhccccccchhHHHHHHHHHHHhhcCccchh---------HHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhh
Confidence 445556677778889999999999999999888876 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 008613 151 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE 198 (559)
Q Consensus 151 l~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~ 198 (559)
|.++..+|..+++-.+|...+.+|++-+-++-.+|.+.-.+...++..
T Consensus 556 WnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~ 603 (777)
T KOG1128|consen 556 WNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEF 603 (777)
T ss_pred hhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccH
Confidence 999999999999999999999999998877766666655554444433
No 128
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.30 E-value=2.2e-06 Score=83.02 Aligned_cols=114 Identities=20% Similarity=0.087 Sum_probs=103.8
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008613 67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 146 (559)
Q Consensus 67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~ 146 (559)
....+..++++|+.|-.-|-+.-|.--|+++|.+.|..|+ +++-+|..+...|+|+.|.+.|+.++++||.
T Consensus 61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~---------vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~ 131 (297)
T COG4785 61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPE---------VFNYLGIYLTQAGNFDAAYEAFDSVLELDPT 131 (297)
T ss_pred hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHH---------HHHHHHHHHHhcccchHHHHHhhhHhccCCc
Confidence 3345888999999999999999999999999999999877 8999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHH
Q 008613 147 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT--IADVLR 189 (559)
Q Consensus 147 ~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~--a~~~L~ 189 (559)
+--++.+||.+++.-|+|.-|.+++.+-..-||+|+- .|-.|.
T Consensus 132 y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~ 176 (297)
T COG4785 132 YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN 176 (297)
T ss_pred chHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH
Confidence 9999999999999999999999999999999999863 444443
No 129
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.28 E-value=5.9e-06 Score=90.61 Aligned_cols=142 Identities=16% Similarity=0.079 Sum_probs=99.9
Q ss_pred cHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCC
Q 008613 50 PEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ 129 (559)
Q Consensus 50 pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~ 129 (559)
..++..-..-++.-+...++..+.+--+|-.+...|+-++|..+...+++.++..+- ||.-+|.++...++
T Consensus 20 ~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~v---------CwHv~gl~~R~dK~ 90 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHV---------CWHVLGLLQRSDKK 90 (700)
T ss_pred HHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccch---------hHHHHHHHHhhhhh
Confidence 344455555555555666666777777777777777777777777777776666554 77777777777777
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcC
Q 008613 130 YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG 200 (559)
Q Consensus 130 y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~ 200 (559)
|++||++|+.|+.++|+|...|+-++.....+++|+-.+....+.+++.|....-|..+..+...++.+..
T Consensus 91 Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~ 161 (700)
T KOG1156|consen 91 YDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKM 161 (700)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777776666666666666655443
No 130
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.27 E-value=9e-06 Score=94.30 Aligned_cols=134 Identities=16% Similarity=0.098 Sum_probs=106.6
Q ss_pred HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCc---------hhhhhHHHHHHHHHHHHHHcCCHHHHHHH
Q 008613 66 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSS---------EGRTLLLACSLNSMSCYLKTKQYDECIKV 136 (559)
Q Consensus 66 ~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~---------e~~~l~~~~~~nlA~~ylklg~y~eAi~~ 136 (559)
|.+.....+..+...+...++|++|+..+..+++..|..... ....+...++.++......-.+| .++++
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~-~~ve~ 104 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKW-AIVEH 104 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccch-hHHHH
Confidence 455558999999999999999999999999999999987542 11122223333555556566677 77777
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCC
Q 008613 137 GSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH 201 (559)
Q Consensus 137 ~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~ 201 (559)
+...+...+.+-.+++.+|.||..+|++++|...|+++++++|+|+.+.+.++...... +.+++
T Consensus 105 ~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 105 ICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHH
Confidence 77777778999999999999999999999999999999999999999999988876655 44443
No 131
>PRK11906 transcriptional regulator; Provisional
Probab=98.27 E-value=1.6e-05 Score=85.33 Aligned_cols=133 Identities=11% Similarity=-0.078 Sum_probs=107.2
Q ss_pred HHHHHHccCcHHHHHHHHHHHHHh---HHhHHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhcCCCCCch
Q 008613 41 IGEKLANASPEEIATMRARIDAQM---NYEFNAAKMLKKQGNELYSE---------GRFSNALQKYLLAKKNLQGIHSSE 108 (559)
Q Consensus 41 ~~~~~~~~~pee~~aa~~~l~~~~---~~~~~~a~~lk~~Gn~~~k~---------g~y~eAi~~Y~kAL~l~p~~~~~e 108 (559)
..+.+....|+.+.++..-+.... .-.+..+..+.-.+.|++.. ..-.+|+++-.+|+++++.++.
T Consensus 262 g~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~-- 339 (458)
T PRK11906 262 GKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGK-- 339 (458)
T ss_pred HHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHH--
Confidence 333455556666666665555555 44444566666666665543 3456788999999999999976
Q ss_pred hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008613 109 GRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG 182 (559)
Q Consensus 109 ~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~ 182 (559)
++..+|.++...++++.|+..+++|+.++|+.+.+||.+|.++...|+.++|+..++++++++|.-.
T Consensus 340 -------a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~ 406 (458)
T PRK11906 340 -------ILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRR 406 (458)
T ss_pred -------HHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999753
No 132
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=6e-06 Score=86.43 Aligned_cols=143 Identities=14% Similarity=0.078 Sum_probs=109.5
Q ss_pred HHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHH-
Q 008613 54 ATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE- 132 (559)
Q Consensus 54 ~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~e- 132 (559)
..+++-..+.++......+.+.-+|+.+...++..+|+-.|+.|..+.|..-+ ||..+-.||+..|++.+
T Consensus 317 ~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~---------~Y~GL~hsYLA~~~~kEA 387 (564)
T KOG1174|consen 317 ERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLE---------IYRGLFHSYLAQKRFKEA 387 (564)
T ss_pred HHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHH---------HHHHHHHHHHhhchHHHH
Confidence 34455566666667777889999999999999999999999999999888654 88888888888777766
Q ss_pred -----------------------------------HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613 133 -----------------------------------CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV 177 (559)
Q Consensus 133 -----------------------------------Ai~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l 177 (559)
|..+++++|+++|.+.++...++..+..-|++++++..++++|..
T Consensus 388 ~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~ 467 (564)
T KOG1174|consen 388 NALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII 467 (564)
T ss_pred HHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh
Confidence 555666666778888888888889999999999999999999988
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCcc
Q 008613 178 SPDDGTIADVLRDAKEILMKEDGHHGPRG 206 (559)
Q Consensus 178 ~P~~~~a~~~L~~a~~~l~~~~~~~~~~~ 206 (559)
.|++ ..+..|+.+.......+++...|.
T Consensus 468 ~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~ 495 (564)
T KOG1174|consen 468 FPDV-NLHNHLGDIMRAQNEPQKAMEYYY 495 (564)
T ss_pred cccc-HHHHHHHHHHHHhhhHHHHHHHHH
Confidence 8876 355666666555544444333333
No 133
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.26 E-value=3.8e-06 Score=85.43 Aligned_cols=100 Identities=11% Similarity=0.041 Sum_probs=84.5
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHH
Q 008613 114 LACSLNSMSCY-LKTKQYDECIKVGSEVLAYDAKN---VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD---GTIAD 186 (559)
Q Consensus 114 ~~~~~nlA~~y-lklg~y~eAi~~~~~AL~ldP~~---~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~---~~a~~ 186 (559)
...+|+.+.++ ++.|+|++|+..|...++..|++ +.++|++|.+|+..|+|++|+..|++++..+|++ ++++.
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 35788888886 67899999999999999999998 5899999999999999999999999999999986 56666
Q ss_pred HHHHHHHHHHhhcCCCCCccchhhhhc
Q 008613 187 VLRDAKEILMKEDGHHGPRGLLIEEIT 213 (559)
Q Consensus 187 ~L~~a~~~l~~~~~~~~~~~~~i~e~~ 213 (559)
.++.+...+++...+...++.+++...
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 677788777777777777776665443
No 134
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.26 E-value=4.3e-05 Score=78.48 Aligned_cols=112 Identities=20% Similarity=0.199 Sum_probs=90.3
Q ss_pred hHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008613 67 EFNAAKMLKKQGNELYSE-GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA 145 (559)
Q Consensus 67 ~~~~a~~lk~~Gn~~~k~-g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP 145 (559)
....+..+...|..|... +++++|+++|.+|+++...... ......|+.++|.++.++++|++|+..|++++...-
T Consensus 110 ~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~---~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l 186 (282)
T PF14938_consen 110 FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS---PHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCL 186 (282)
T ss_dssp HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC---hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhh
Confidence 344688899999999999 9999999999999998665542 344567999999999999999999999999987532
Q ss_pred C------CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008613 146 K------NV-KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181 (559)
Q Consensus 146 ~------~~-kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~ 181 (559)
+ ++ ..++..+.+++..|++..|...|++...++|..
T Consensus 187 ~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 187 ENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp CHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred cccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 2 23 356788899999999999999999999999865
No 135
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.26 E-value=4.4e-05 Score=75.76 Aligned_cols=131 Identities=13% Similarity=0.058 Sum_probs=110.4
Q ss_pred HHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHH
Q 008613 57 RARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKV 136 (559)
Q Consensus 57 ~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~ 136 (559)
.+-+..-+...+.....++.+-..+..+|+--+||+...+.++.++.+++ +|..++.+|+..++|++|+-+
T Consensus 106 ~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~E---------AW~eLaeiY~~~~~f~kA~fC 176 (289)
T KOG3060|consen 106 IEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQE---------AWHELAEIYLSEGDFEKAAFC 176 (289)
T ss_pred HHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHH---------HHHHHHHHHHhHhHHHHHHHH
Confidence 34444444455555666777777788889999999999999999999987 999999999999999999999
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008613 137 GSEVLAYDAKNVKALYRRGQAYKDIGR---LEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM 196 (559)
Q Consensus 137 ~~~AL~ldP~~~kal~~rG~A~~~lg~---~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~ 196 (559)
+++++-+.|.++-++.++|.+++..|. ++-|.++|+++++++|.+...+..|-.+...+.
T Consensus 177 lEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la 239 (289)
T KOG3060|consen 177 LEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALA 239 (289)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHH
Confidence 999999999999999999999998874 667999999999999988777776666555554
No 136
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.24 E-value=9e-06 Score=89.40 Aligned_cols=134 Identities=18% Similarity=0.139 Sum_probs=107.2
Q ss_pred HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-
Q 008613 66 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD- 144 (559)
Q Consensus 66 ~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ld- 144 (559)
..+..+..+.+++..|++.|+|++|..+|.+|+++..... .....-....+.+++.++...++|++|+.++.+++++-
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~-~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~ 356 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLL-GASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL 356 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhh-ccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 3556788899999999999999999999999999876622 12344567789999999999999999999999999862
Q ss_pred ----C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHHhhcC
Q 008613 145 ----A---KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS--------PDDGTIADVLRDAKEILMKEDG 200 (559)
Q Consensus 145 ----P---~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~--------P~~~~a~~~L~~a~~~l~~~~~ 200 (559)
+ .-++.+.++|..|+..|+|+||...|++|+.+. +........++....+.++...
T Consensus 357 ~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~ 427 (508)
T KOG1840|consen 357 DAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEE 427 (508)
T ss_pred hhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccch
Confidence 2 336899999999999999999999999999874 1223455566666666655444
No 137
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.24 E-value=0.0001 Score=72.06 Aligned_cols=151 Identities=19% Similarity=0.127 Sum_probs=106.9
Q ss_pred HHHHHHhhCCChHHHHHHHHHHHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 008613 24 KCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQG 103 (559)
Q Consensus 24 ~~a~e~l~~~~pee~~~~~~~~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~ 103 (559)
..+...+...+.++......++....|. ..-..+.+...|.++++.|+|.+|+..|.+.+...|.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~---------------s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~ 74 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPN---------------SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN 74 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TT---------------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCC---------------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 3444555556666655555544443332 2334677888999999999999999999999999999
Q ss_pred CCCchhhhhHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHcCCCCHH-----------------HHHHHH
Q 008613 104 IHSSEGRTLLLACSLNSMSCYLKTK-----------QYDECIKVGSEVLAYDAKNVK-----------------ALYRRG 155 (559)
Q Consensus 104 ~~~~e~~~l~~~~~~nlA~~ylklg-----------~y~eAi~~~~~AL~ldP~~~k-----------------al~~rG 155 (559)
++. ...+++.+|.|++++. ...+|+..|+..++..|++.. --+..|
T Consensus 75 ~~~------~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia 148 (203)
T PF13525_consen 75 SPK------ADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIA 148 (203)
T ss_dssp -TT------HHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Ccc------hhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 875 5668888888877653 346899999999999998731 234468
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH---HHHHHHH
Q 008613 156 QAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVL---RDAKEIL 195 (559)
Q Consensus 156 ~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L---~~a~~~l 195 (559)
.-|...|.|..|+..++.+++..|+.+.+...+ .++...+
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l 191 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKL 191 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHh
Confidence 889999999999999999999999986654444 4444444
No 138
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=2.9e-05 Score=78.93 Aligned_cols=100 Identities=12% Similarity=-0.005 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC---
Q 008613 87 FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGR--- 163 (559)
Q Consensus 87 y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~--- 163 (559)
.++-+...+..|..+|.+.. -|.-+|.+|+.++++..|+..|.+|+++.|+|+..+.-.|.+++...+
T Consensus 138 ~~~l~a~Le~~L~~nP~d~e---------gW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ 208 (287)
T COG4235 138 MEALIARLETHLQQNPGDAE---------GWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQM 208 (287)
T ss_pred HHHHHHHHHHHHHhCCCCch---------hHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcc
Confidence 45567778888888888876 788999999999999999999999999999999999999988875543
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008613 164 LEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 195 (559)
Q Consensus 164 ~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l 195 (559)
..++...|++++.+||+|..+...|.......
T Consensus 209 ta~a~~ll~~al~~D~~~iral~lLA~~afe~ 240 (287)
T COG4235 209 TAKARALLRQALALDPANIRALSLLAFAAFEQ 240 (287)
T ss_pred cHHHHHHHHHHHhcCCccHHHHHHHHHHHHHc
Confidence 57788999999999999998888887775553
No 139
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.23 E-value=6.7e-05 Score=81.09 Aligned_cols=120 Identities=13% Similarity=0.041 Sum_probs=96.2
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHH
Q 008613 55 TMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 134 (559)
Q Consensus 55 aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi 134 (559)
.+.+.+....+..+.....+...|..+...|++++|..+|.++.+..|...- .+...++.+++..|+|+.|+
T Consensus 102 ~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l--------~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 102 KAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNI--------LVEIARTRILLAQNELHAAR 173 (409)
T ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCch--------HHHHHHHHHHHHCCCHHHHH
Confidence 3333333333333333566778899999999999999999999988776531 14445689999999999999
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008613 135 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG 182 (559)
Q Consensus 135 ~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~ 182 (559)
..+++.++..|+++.++..++.+|...|+|++|+..+++.++....++
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~ 221 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDD 221 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH
Confidence 999999999999999999999999999999999999999998754443
No 140
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.22 E-value=1.5e-05 Score=85.86 Aligned_cols=130 Identities=20% Similarity=0.064 Sum_probs=105.1
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008613 67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 146 (559)
Q Consensus 67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~ 146 (559)
....+..+...+..+...|++++|.....++++. +.++. +..-.+. +..+++++++..+++.++..|+
T Consensus 259 ~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~---------l~~l~~~--l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 259 TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDER---------LVLLIPR--LKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHH---------HHHHHhh--ccCCChHHHHHHHHHHHhhCCC
Confidence 3445778888999999999999999999999984 43432 2222222 3459999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613 147 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 209 (559)
Q Consensus 147 ~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i 209 (559)
++..++.+|.++...++|++|...|++++++.|++.. +..+..+....++.+++..-|++.+
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999754 4578888888877766555555443
No 141
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=9.1e-06 Score=88.01 Aligned_cols=188 Identities=12% Similarity=-0.022 Sum_probs=149.7
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 008613 58 ARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVG 137 (559)
Q Consensus 58 ~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~ 137 (559)
.-.+.-.+..+..+-.|+..|.-|+-.|+|.+|-.+|.|+..++|.... +|...|..|--.++.+.|+..|
T Consensus 299 ~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgp---------aWl~fghsfa~e~EhdQAmaaY 369 (611)
T KOG1173|consen 299 LLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGP---------AWLAFGHSFAGEGEHDQAMAAY 369 (611)
T ss_pred HHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccH---------HHHHHhHHhhhcchHHHHHHHH
Confidence 3444555567777899999999999999999999999999999999876 9999999999999999999999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchhhhhchhhh
Q 008613 138 SEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIEEITEEVG 217 (559)
Q Consensus 138 ~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i~e~~e~~~ 217 (559)
..|-++-|..-.-.+.+|.=|...++++-|-..|..|+.+.|.|+-+...++-+....+...++...+..+++.+.+-..
T Consensus 370 ~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~ 449 (611)
T KOG1173|consen 370 FTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLN 449 (611)
T ss_pred HHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccc
Confidence 99999999999999999999999999999999999999999999999999999888777776665555555411111100
Q ss_pred ccCCCCCCCCchhhhhhhcCCCCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHHHHcCC
Q 008613 218 AVSSGSHRSSGTEYLAREKADPSKSEHSANGRGSSTKPEFLPDLKDDPESIRSFQNFISNAN 279 (559)
Q Consensus 218 ~~~~~~~~~s~~~~~~~e~~~s~~~~~~~~~~~~~~~~~~l~~l~~~PEai~~~~~~i~~~d 279 (559)
+.. ... ......-+....+++|.|+|.-|+..|...+
T Consensus 450 e~~-----------------------~w~--p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~ 486 (611)
T KOG1173|consen 450 EKI-----------------------FWE--PTLNNLGHAYRKLNKYEEAIDYYQKALLLSP 486 (611)
T ss_pred ccc-----------------------chh--HHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 000 000 0011233455567889999999999998543
No 142
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=9.2e-06 Score=85.34 Aligned_cols=100 Identities=11% Similarity=-0.036 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 150 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka 150 (559)
...+.+++.|+.+.++|.+|+..++++|.+.|.+.- ++|++|.||+.+++|+.|+.+|.+|++++|.|-.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~K---------ALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~ 327 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVK---------ALYRRGQALLALGEYDLARDDFQKALKLEPSNKAA 327 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchh---------HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHH
Confidence 556788999999999999999999999999998854 99999999999999999999999999999999888
Q ss_pred HHHHHHHHHHcCCHHHH-HHHHHHHHHhCC
Q 008613 151 LYRRGQAYKDIGRLEEA-VSDLSNAHEVSP 179 (559)
Q Consensus 151 l~~rG~A~~~lg~~eeA-i~dlekAl~l~P 179 (559)
..-+..+.....++++. .+.|.+.+...+
T Consensus 328 ~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 328 RAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 87787777777776654 667777766544
No 143
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.18 E-value=3.4e-06 Score=90.40 Aligned_cols=117 Identities=19% Similarity=0.113 Sum_probs=102.2
Q ss_pred HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH
Q 008613 66 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK---QYDECIKVGSEVLA 142 (559)
Q Consensus 66 ~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg---~y~eAi~~~~~AL~ 142 (559)
..+..++.++..||..|-.+....||..|.+++...|... .+|.|++.++++.+ +.-.|+.+|..|++
T Consensus 369 eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~---------~~l~nraa~lmkRkW~~d~~~AlrDch~Alr 439 (758)
T KOG1310|consen 369 ELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAI---------YLLENRAAALMKRKWRGDSYLALRDCHVALR 439 (758)
T ss_pred hchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchh---------HHHHhHHHHHHhhhccccHHHHHHhHHhhcc
Confidence 4566799999999999999999999999999999877754 49999999999864 77889999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008613 143 YDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA 191 (559)
Q Consensus 143 ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a 191 (559)
++|...++|++++.++..++++.+|+.+...+....|.+......+.-+
T Consensus 440 ln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~~~v~~l 488 (758)
T KOG1310|consen 440 LNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDVARQNFVLCL 488 (758)
T ss_pred CChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhhhhhhcc
Confidence 9999999999999999999999999999998888888776554444333
No 144
>PRK15331 chaperone protein SicA; Provisional
Probab=98.16 E-value=4.5e-05 Score=71.54 Aligned_cols=116 Identities=11% Similarity=0.030 Sum_probs=86.5
Q ss_pred HhcCCHHHHHHH----HHHhhCCChHHHHHHHHHHHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHH
Q 008613 15 MKNMRPEDLKCA----AEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNA 90 (559)
Q Consensus 15 mk~m~pedl~~a----~e~l~~~~pee~~~~~~~~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eA 90 (559)
+.+.++++|..+ .+....++.++......-+.-.++.+ .+.+..+|.++...++|.+|
T Consensus 29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n------------------~~Y~~GLaa~~Q~~k~y~~A 90 (165)
T PRK15331 29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYN------------------PDYTMGLAAVCQLKKQFQKA 90 (165)
T ss_pred HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc------------------HHHHHHHHHHHHHHHHHHHH
Confidence 344455555442 33445555555555555555545554 88999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008613 91 LQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYK 159 (559)
Q Consensus 91 i~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~ 159 (559)
+..|..|..+.+++|. ..+..|.||+.+|+...|...|..++. .|.+ ..+..++.+++
T Consensus 91 i~~Y~~A~~l~~~dp~---------p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~-~~l~~~A~~~L 148 (165)
T PRK15331 91 CDLYAVAFTLLKNDYR---------PVFFTGQCQLLMRKAAKARQCFELVNE-RTED-ESLRAKALVYL 148 (165)
T ss_pred HHHHHHHHHcccCCCC---------ccchHHHHHHHhCCHHHHHHHHHHHHh-Ccch-HHHHHHHHHHH
Confidence 9999999999999987 789999999999999999999999998 4553 33444444444
No 145
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=98.15 E-value=5.8e-05 Score=66.68 Aligned_cols=104 Identities=21% Similarity=0.334 Sum_probs=85.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCch---hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------
Q 008613 74 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSE---GRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY------- 143 (559)
Q Consensus 74 lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e---~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l------- 143 (559)
....|...+..|-|.+|...|++|.+.....|..+ ...+.+.|+..|+.++..+|+|++++....++|.+
T Consensus 12 aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL 91 (144)
T PF12968_consen 12 ALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGEL 91 (144)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc
Confidence 34466778889999999999999999998887654 45667789999999999999999999999999865
Q ss_pred CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613 144 DAK----NVKALYRRGQAYKDIGRLEEAVSDLSNAHEV 177 (559)
Q Consensus 144 dP~----~~kal~~rG~A~~~lg~~eeAi~dlekAl~l 177 (559)
+.+ +..+.++|+.++..+|+.++|+..|+.+.+.
T Consensus 92 ~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 92 HQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 332 4678999999999999999999999998764
No 146
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.14 E-value=3.5e-05 Score=84.64 Aligned_cols=120 Identities=14% Similarity=0.055 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008613 72 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKAL 151 (559)
Q Consensus 72 ~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal 151 (559)
..++......|..++|...+......|.-.|.+++ .+.-.|..+..+|+-++|...++.+++.|+.+..+|
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHge---------slAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCw 78 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGE---------SLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCW 78 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccch---------hHHhccchhhcccchHHHHHHHHHHhccCcccchhH
Confidence 45666777788888999999999988888888876 566778888888999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcC
Q 008613 152 YRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG 200 (559)
Q Consensus 152 ~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~ 200 (559)
+.+|..+..-++|++|+++|+.|+.++|+|..++.-|..++-.+++.++
T Consensus 79 Hv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~ 127 (700)
T KOG1156|consen 79 HVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEG 127 (700)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999888888888888777654
No 147
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.13 E-value=2.2e-06 Score=88.02 Aligned_cols=79 Identities=16% Similarity=0.204 Sum_probs=67.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcC
Q 008613 122 SCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG 200 (559)
Q Consensus 122 ~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~ 200 (559)
.-.+..|.++.||++|+.+|+++|..+..|-.|+.+++.|+++..|+.||..+++++|+...-+...+.++..++....
T Consensus 122 ~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 122 SEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHH
Confidence 3445668899999999999999999999999999999999999999999999999999987666666666666655544
No 148
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=1e-05 Score=84.80 Aligned_cols=132 Identities=14% Similarity=0.142 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCc---------------hhhhhH----------HHHHHHHHH
Q 008613 68 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSS---------------EGRTLL----------LACSLNSMS 122 (559)
Q Consensus 68 ~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~---------------e~~~l~----------~~~~~nlA~ 122 (559)
+.+...+-..|.+++..|+|.+|+..|.++.-++|..... ....+. ..-|+--+.
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~ 308 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQ 308 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhh
Confidence 3457778889999999999999999999999998875431 111111 122344455
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 008613 123 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED 199 (559)
Q Consensus 123 ~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~ 199 (559)
..+..++|+.|+.+..++|.++|++..+|...|.++..+++.++|+-.|+.|..+.|.+-.++..|-..+-..++.+
T Consensus 309 ~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 309 LLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHH
Confidence 66678999999999999999999999999999999999999999999999999999998888877766655554443
No 149
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.11 E-value=6e-06 Score=79.20 Aligned_cols=97 Identities=19% Similarity=0.141 Sum_probs=83.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008613 119 NSMSCYLKTKQYDECIKVGSEVLAYDAKN-----VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE 193 (559)
Q Consensus 119 nlA~~ylklg~y~eAi~~~~~AL~ldP~~-----~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~ 193 (559)
.-|.-+++-|+|++|...|..||.+.|.- ...|.+||.|+..++.|+.||.++.++++|.|.+..++.+...++.
T Consensus 100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 100 KEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE 179 (271)
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence 34667788999999999999999999975 3589999999999999999999999999999999999998899999
Q ss_pred HHHhhcCCCCCccchhhhhchhh
Q 008613 194 ILMKEDGHHGPRGLLIEEITEEV 216 (559)
Q Consensus 194 ~l~~~~~~~~~~~~~i~e~~e~~ 216 (559)
.+..++.+...|++++ +..++.
T Consensus 180 k~ek~eealeDyKki~-E~dPs~ 201 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKIL-ESDPSR 201 (271)
T ss_pred hhhhHHHHHHHHHHHH-HhCcch
Confidence 9888777777777665 444443
No 150
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.10 E-value=1.4e-05 Score=89.18 Aligned_cols=124 Identities=17% Similarity=0.014 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 150 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka 150 (559)
-..|...+..+.+.+.-++|.-+..++-.++|..+. .|+-+|.++...|++.+|...|..|+.+||+++..
T Consensus 650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~---------~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s 720 (799)
T KOG4162|consen 650 QKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSAS---------VYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPS 720 (799)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHH---------HHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHH
Confidence 344556777888888888898899999998777654 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCC
Q 008613 151 LYRRGQAYKDIGRLEEAVS--DLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHG 203 (559)
Q Consensus 151 l~~rG~A~~~lg~~eeAi~--dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~ 203 (559)
..-+|.+|...|+-.-|.. .+..+++++|.+.++|..|+.+.+.+++.+.+..
T Consensus 721 ~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aae 775 (799)
T KOG4162|consen 721 MTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAE 775 (799)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHH
Confidence 9999999999999888887 9999999999999999999999999987665433
No 151
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.10 E-value=1.6e-05 Score=81.14 Aligned_cols=119 Identities=10% Similarity=-0.070 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 150 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka 150 (559)
++.+..+..+|.+..+...|+..|.+.++..|.+.. .+...+.+|..++++++|+++|..+++++|.|+++
T Consensus 256 ~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT---------~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEa 326 (478)
T KOG1129|consen 256 PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVT---------YLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEA 326 (478)
T ss_pred hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhh---------hhhhhHHHHHHHHhHHHHHHHHHHHHhcCCcccee
Confidence 566666667777777777777777777776666533 56666777777777777777777777777777777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 008613 151 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE 198 (559)
Q Consensus 151 l~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~ 198 (559)
+--.|..|+.-++.|-|+.+|++.|.+--.+++...+|+.+.....+.
T Consensus 327 iAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 327 IACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQI 374 (478)
T ss_pred eeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcch
Confidence 777777777777777777777777777666677777777665554433
No 152
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.09 E-value=1.1e-05 Score=91.95 Aligned_cols=152 Identities=14% Similarity=0.031 Sum_probs=122.0
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCc---------------------------hhh
Q 008613 58 ARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSS---------------------------EGR 110 (559)
Q Consensus 58 ~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~---------------------------e~~ 110 (559)
..+.+.++..+.-+..+--+|..|..--+...|..+|.+|.++++.+... ...
T Consensus 479 ~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a 558 (1238)
T KOG1127|consen 479 HALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPA 558 (1238)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchH
Confidence 45555555666677888889999888888899999999999998876542 012
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008613 111 TLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD 190 (559)
Q Consensus 111 ~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~ 190 (559)
......|..||..|++.+++..||.+++.+++.+|.+..+|.-+|.+|..-|+|.-|++.|.++..++|.+.-.......
T Consensus 559 ~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~ 638 (1238)
T KOG1127|consen 559 FACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAV 638 (1238)
T ss_pred HHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHH
Confidence 23344577799999999999999999999999999999999999999999999999999999999999998776666666
Q ss_pred HHHHHHhhcCCCCCccchh
Q 008613 191 AKEILMKEDGHHGPRGLLI 209 (559)
Q Consensus 191 a~~~l~~~~~~~~~~~~~i 209 (559)
.+...++++++....+..|
T Consensus 639 ~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 639 MECDNGKYKEALDALGLII 657 (1238)
T ss_pred HHHHhhhHHHHHHHHHHHH
Confidence 6666666665444444444
No 153
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.07 E-value=0.00026 Score=76.33 Aligned_cols=107 Identities=12% Similarity=0.041 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008613 72 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKAL 151 (559)
Q Consensus 72 ~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal 151 (559)
-.+...+...+..|+++.|..+|.++.+..|+... ......+.+++..|+|++|+..++++++.+|+++.++
T Consensus 119 l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~--------~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al 190 (398)
T PRK10747 119 VNYLLAAEAAQQRGDEARANQHLERAAELADNDQL--------PVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVL 190 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchH--------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHH
Confidence 33444566669999999999999999988776531 1333458899999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008613 152 YRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIAD 186 (559)
Q Consensus 152 ~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~ 186 (559)
..++.+|...|+|++|+..+.+..+..+.++....
T Consensus 191 ~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~ 225 (398)
T PRK10747 191 RLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRA 225 (398)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHH
Confidence 99999999999999999999999888776555433
No 154
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.07 E-value=0.00066 Score=69.67 Aligned_cols=107 Identities=15% Similarity=0.150 Sum_probs=99.1
Q ss_pred HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008613 66 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA 145 (559)
Q Consensus 66 ~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP 145 (559)
+.+..++.+-+++..+....+++.|+..+.+|++.+|.+.. +-.-+|.+++..|+|+.|++.++.+++-||
T Consensus 175 ~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvR---------Asi~lG~v~~~~g~y~~AV~~~e~v~eQn~ 245 (389)
T COG2956 175 YRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVR---------ASIILGRVELAKGDYQKAVEALERVLEQNP 245 (389)
T ss_pred chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcccee---------hhhhhhHHHHhccchHHHHHHHHHHHHhCh
Confidence 67778999999999999999999999999999999999865 666899999999999999999999999999
Q ss_pred CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008613 146 KN-VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181 (559)
Q Consensus 146 ~~-~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~ 181 (559)
++ +.++-.+-.||..+|+.++.+..+.++.+..++.
T Consensus 246 ~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 246 EYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 98 5788899999999999999999999999988765
No 155
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.05 E-value=3.3e-05 Score=85.91 Aligned_cols=129 Identities=11% Similarity=-0.041 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcC--------CHHHHHHHHHH
Q 008613 71 AKMLKKQGNELYSEGR---FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK--------QYDECIKVGSE 139 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~---y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg--------~y~eAi~~~~~ 139 (559)
+-.++.+|..++.+++ +..|+.+|.+|++++|++.. +|..++.||.... ++..+.....+
T Consensus 339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~---------a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTY---------AQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHH---------HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 5556677877776655 88999999999999999854 6666677665542 34456666667
Q ss_pred HHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613 140 VLAY--DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 209 (559)
Q Consensus 140 AL~l--dP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i 209 (559)
++.+ +|..+.+|.-+|..+...|++++|...|++|+.++|+ ..++..++.+....++.+++...+.+++
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6664 7888899999999999999999999999999999994 6789999999988887776655555544
No 156
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.04 E-value=4e-05 Score=68.74 Aligned_cols=85 Identities=21% Similarity=0.181 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHH
Q 008613 116 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN---VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD---DGTIADVLR 189 (559)
Q Consensus 116 ~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~---~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~---~~~a~~~L~ 189 (559)
++|++|.+|-.+|+.++||..|++++...... ..++..+|.+|..+|++++|+..+++++...|+ +..+...+.
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 78999999999999999999999999976544 679999999999999999999999999999898 666666666
Q ss_pred HHHHHHHhhcC
Q 008613 190 DAKEILMKEDG 200 (559)
Q Consensus 190 ~a~~~l~~~~~ 200 (559)
.+...+++.++
T Consensus 83 l~L~~~gr~~e 93 (120)
T PF12688_consen 83 LALYNLGRPKE 93 (120)
T ss_pred HHHHHCCCHHH
Confidence 66666655544
No 157
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.00 E-value=0.00018 Score=79.32 Aligned_cols=136 Identities=13% Similarity=0.056 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHH
Q 008613 52 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD 131 (559)
Q Consensus 52 e~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~ 131 (559)
++.++..-++..+++.+..-+.|...-...+....|++|-.+|.++-...+.. .+|+.-+.....+++.+
T Consensus 599 dv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTe----------Rv~mKs~~~er~ld~~e 668 (913)
T KOG0495|consen 599 DVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTE----------RVWMKSANLERYLDNVE 668 (913)
T ss_pred CcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcc----------hhhHHHhHHHHHhhhHH
Confidence 34555666677777777777777777777777778888888887777654443 27788888888899999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 008613 132 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 197 (559)
Q Consensus 132 eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~ 197 (559)
+|++.|+++|+..|++.+.|..+|+++...++.+.|...|...++++|+..-.|-.|..+.++.+.
T Consensus 669 eA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~ 734 (913)
T KOG0495|consen 669 EALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQ 734 (913)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999988888777643
No 158
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.98 E-value=0.0003 Score=64.51 Aligned_cols=107 Identities=19% Similarity=0.146 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCc-------------hhhhhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSS-------------EGRTLLLACSLNSMSCYLKTKQYDECIKVG 137 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~-------------e~~~l~~~~~~nlA~~ylklg~y~eAi~~~ 137 (559)
...+...|......++...++..|.+++.+...+.-. ........++..++.++...|+|++|+..|
T Consensus 6 F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 85 (146)
T PF03704_consen 6 FEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLL 85 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 4555667777888899999999999999887654321 244566778888999999999999999999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613 138 SEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV 177 (559)
Q Consensus 138 ~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l 177 (559)
.+++.++|-+..+|..+-.+|...|++.+|+..|+++...
T Consensus 86 ~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 86 QRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988553
No 159
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.97 E-value=1.8e-05 Score=65.73 Aligned_cols=61 Identities=18% Similarity=0.235 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008613 70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEV 140 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~A 140 (559)
....+..+|.++++.|+|.+|+..+++ +.+.+.+. .+++-+|.||+++|+|++|+..+.++
T Consensus 24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~---------~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNP---------DIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHH---------HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCH---------HHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 466788899999999999999999999 76666543 37778899999999999999999875
No 160
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.96 E-value=7.5e-05 Score=80.08 Aligned_cols=95 Identities=13% Similarity=0.140 Sum_probs=70.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008613 74 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYR 153 (559)
Q Consensus 74 lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~ 153 (559)
....+.+++..++..+|+..+.++|...|.+.. ++.-.+..+++.++|+.|+..+.+++++.|.+.++|+.
T Consensus 203 ~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~---------LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~ 273 (395)
T PF09295_consen 203 AVLLARVYLLMNEEVEAIRLLNEALKENPQDSE---------LLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQ 273 (395)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 334666677777777888888888877666633 66667777778888888888888888888888888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Q 008613 154 RGQAYKDIGRLEEAVSDLSNAHEV 177 (559)
Q Consensus 154 rG~A~~~lg~~eeAi~dlekAl~l 177 (559)
++.+|..+|+|++|+..++.+--+
T Consensus 274 La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 274 LAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HHHHHHhcCCHHHHHHHHhcCcCC
Confidence 888888888888888776644433
No 161
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.93 E-value=9.4e-05 Score=75.94 Aligned_cols=112 Identities=17% Similarity=0.215 Sum_probs=86.2
Q ss_pred hHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Q 008613 64 MNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT-KQYDECIKVGSEVLA 142 (559)
Q Consensus 64 ~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylkl-g~y~eAi~~~~~AL~ 142 (559)
.......+..+...+++|.+. ++.+|+++|.+|+.+.-.... ....+.++.++|.+|... +++++|++.|.+|++
T Consensus 68 ~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~---~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~ 143 (282)
T PF14938_consen 68 LGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGR---FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAE 143 (282)
T ss_dssp TT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT----HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCc---HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344556677777767666555 999999999999998654432 344577999999999998 999999999999998
Q ss_pred cCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008613 143 YDAK--N----VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP 179 (559)
Q Consensus 143 ldP~--~----~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P 179 (559)
+.-. . ..++...|.++..+++|++|+..|++.....-
T Consensus 144 ~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l 186 (282)
T PF14938_consen 144 LYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCL 186 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCC
T ss_pred HHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhh
Confidence 7321 1 46788999999999999999999999988653
No 162
>PRK11906 transcriptional regulator; Provisional
Probab=97.92 E-value=3.6e-05 Score=82.64 Aligned_cols=117 Identities=11% Similarity=-0.058 Sum_probs=94.8
Q ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHH---HhcCCCCCchhhhhHHHHHHHHHHHHHHc---------CCHHHHHHHHH
Q 008613 74 LKKQGNELYSEGR---FSNALQKYLLAK---KNLQGIHSSEGRTLLLACSLNSMSCYLKT---------KQYDECIKVGS 138 (559)
Q Consensus 74 lk~~Gn~~~k~g~---y~eAi~~Y~kAL---~l~p~~~~~e~~~l~~~~~~nlA~~ylkl---------g~y~eAi~~~~ 138 (559)
++-.|...+.++. ...|+.+|.+|+ .++|... .+|.-++.||... ....+|++..+
T Consensus 258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a---------~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~ 328 (458)
T PRK11906 258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKT---------ECYCLLAECHMSLALHGKSELELAAQKALELLD 328 (458)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccH---------HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 3445555544333 467888999999 7766664 4888888888765 24567889999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 008613 139 EVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED 199 (559)
Q Consensus 139 ~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~ 199 (559)
+|++++|.++.++..+|.++...++++.|+..|++|+.++|+...++...+.+..--++.+
T Consensus 329 rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~ 389 (458)
T PRK11906 329 YVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIE 389 (458)
T ss_pred HHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999999999999999999999999999999988888765555443
No 163
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.89 E-value=0.00041 Score=69.39 Aligned_cols=123 Identities=14% Similarity=0.142 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH--
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV-- 148 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~-- 148 (559)
+..|+++|...++.|+|++|++.|.+.....|..+- ...+.+.++.++++.++|++|+...++-+++.|+++
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~------~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~ 107 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPY------SEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA 107 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc------cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence 788999999999999999999999999887666553 356788999999999999999999999999999874
Q ss_pred -HHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHhhc
Q 008613 149 -KALYRRGQAYKDIGR--------LEEAVSDLSNAHEVSPDD---GTIADVLRDAKEILMKED 199 (559)
Q Consensus 149 -kal~~rG~A~~~lg~--------~eeAi~dlekAl~l~P~~---~~a~~~L~~a~~~l~~~~ 199 (559)
-++|.+|.++...-+ -.+|+..|+..+...|+. +.+...+..+...+..++
T Consensus 108 dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~E 170 (254)
T COG4105 108 DYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHE 170 (254)
T ss_pred hHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 578899999865422 456899999999999986 456667777777766554
No 164
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.88 E-value=0.00011 Score=81.96 Aligned_cols=120 Identities=9% Similarity=0.073 Sum_probs=112.3
Q ss_pred cHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCC
Q 008613 50 PEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ 129 (559)
Q Consensus 50 pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~ 129 (559)
..++..+..+++..+.-++-....|+..|-++++.+++..|+++|.+++.+.|++.. .|.|++.+|.++++
T Consensus 498 ~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~e---------aWnNls~ayi~~~~ 568 (777)
T KOG1128|consen 498 NKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAE---------AWNNLSTAYIRLKK 568 (777)
T ss_pred chhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchh---------hhhhhhHHHHHHhh
Confidence 356677888888888888888999999999999999999999999999999999876 99999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008613 130 YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS 178 (559)
Q Consensus 130 y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~ 178 (559)
-.+|-..+.+|++.+-.+++.|-|.-.+....|.|++|+..|.+.+.+.
T Consensus 569 k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 569 KKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred hHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999998864
No 165
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.87 E-value=0.00024 Score=73.38 Aligned_cols=103 Identities=17% Similarity=0.193 Sum_probs=75.2
Q ss_pred HHHHHHHHHcC--CHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008613 75 KKQGNELYSEG--RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALY 152 (559)
Q Consensus 75 k~~Gn~~~k~g--~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~ 152 (559)
...+.+.+..| +|.+|.-.|.+..+..+.. ..+++.++.|++.+|+|++|...+.+++..+|+++.++.
T Consensus 169 La~awv~l~~g~e~~~~A~y~f~El~~~~~~t---------~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~La 239 (290)
T PF04733_consen 169 LAEAWVNLATGGEKYQDAFYIFEELSDKFGST---------PKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLA 239 (290)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHHHHHCCS--S---------HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHH
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHhccCCC---------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHH
Confidence 33444444444 6899999999866543333 336778899999999999999999999999999999999
Q ss_pred HHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHH
Q 008613 153 RRGQAYKDIGRL-EEAVSDLSNAHEVSPDDGTIAD 186 (559)
Q Consensus 153 ~rG~A~~~lg~~-eeAi~dlekAl~l~P~~~~a~~ 186 (559)
++..+...+|+. +.+.+.+......+|+|+-+..
T Consensus 240 Nliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~ 274 (290)
T PF04733_consen 240 NLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKD 274 (290)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHH
Confidence 999999999988 5566677777778898876543
No 166
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.80 E-value=0.00025 Score=76.03 Aligned_cols=110 Identities=16% Similarity=0.100 Sum_probs=99.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008613 80 ELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYK 159 (559)
Q Consensus 80 ~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~ 159 (559)
.+...++|+.|+..|.+.....|. +..-++.+|+..++..+|++...++|+.+|.+...+...+..+.
T Consensus 178 ~l~~t~~~~~ai~lle~L~~~~pe------------v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 178 YLSLTQRYDEAIELLEKLRERDPE------------VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHhhcccHHHHHHHHHHHHhcCCc------------HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344568899999999998876543 55678999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCC
Q 008613 160 DIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH 201 (559)
Q Consensus 160 ~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~ 201 (559)
..++++.|+..+++++.+.|++...|..|..++-.+++.+.+
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~A 287 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENA 287 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHH
Confidence 999999999999999999999999999999999998887653
No 167
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.80 E-value=7.4e-05 Score=75.18 Aligned_cols=97 Identities=15% Similarity=0.088 Sum_probs=84.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Q 008613 117 SLNSMSCYLKTKQYDECIKVGSEVLAYDAKN---VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD---GTIADVLRD 190 (559)
Q Consensus 117 ~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~---~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~---~~a~~~L~~ 190 (559)
+|+.|.-+++.|+|..|...|..-|+..|+. +.++|++|.+++..|+|++|...|..+++-.|++ ++....|+.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 7899999999999999999999999999987 5899999999999999999999999999998876 567778888
Q ss_pred HHHHHHhhcCCCCCccchhhhhc
Q 008613 191 AKEILMKEDGHHGPRGLLIEEIT 213 (559)
Q Consensus 191 a~~~l~~~~~~~~~~~~~i~e~~ 213 (559)
+..++++...+..-++.+|+++.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP 246 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYP 246 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCC
Confidence 88888877776666666665443
No 168
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.78 E-value=0.00041 Score=63.75 Aligned_cols=85 Identities=9% Similarity=0.067 Sum_probs=72.4
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCC----------
Q 008613 60 IDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ---------- 129 (559)
Q Consensus 60 l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~---------- 129 (559)
++....+..-..++...++.+||+.++|.+|+..|.+-|++.|.++. ...+++.+|.+++.+..
T Consensus 36 L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~------vdYa~Y~~gL~~~~~~~~~~~~~~~~d 109 (142)
T PF13512_consen 36 LDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN------VDYAYYMRGLSYYEQDEGSLQSFFRSD 109 (142)
T ss_pred HHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC------ccHHHHHHHHHHHHHhhhHHhhhcccc
Confidence 33333344455777888999999999999999999999999999986 56799999999999987
Q ss_pred -----HHHHHHHHHHHHHcCCCCHHH
Q 008613 130 -----YDECIKVGSEVLAYDAKNVKA 150 (559)
Q Consensus 130 -----y~eAi~~~~~AL~ldP~~~ka 150 (559)
...|+.++.++|+..|++.-+
T Consensus 110 rD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 110 RDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred cCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 899999999999999998543
No 169
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.73 E-value=4.7e-05 Score=52.04 Aligned_cols=31 Identities=19% Similarity=0.342 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008613 116 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 146 (559)
Q Consensus 116 ~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~ 146 (559)
+|+++|.||..+++|++|+.+|+++|+++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 5566666666666666666666666666654
No 170
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.73 E-value=0.00033 Score=73.61 Aligned_cols=126 Identities=21% Similarity=0.195 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD------ 144 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ld------ 144 (559)
-.++-++||++.-.|+|+.|+++|.+++.+.-...+ +..-+...|-+|..|.-+++|++||.+..+-|.|-
T Consensus 235 RRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~---r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~Dr 311 (639)
T KOG1130|consen 235 RRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGN---RTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDR 311 (639)
T ss_pred HHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcc---hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345678999999999999999999999887555443 44556678889999999999999999998877653
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CC-CHHHHHHHHHHHHHHHhhc
Q 008613 145 AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS-----PD-DGTIADVLRDAKEILMKED 199 (559)
Q Consensus 145 P~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~-----P~-~~~a~~~L~~a~~~l~~~~ 199 (559)
-...++++-+|.+|..+|.++.|+...+..+++. +. ...+..+|..+...++...
T Consensus 312 iGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~d 372 (639)
T KOG1130|consen 312 IGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQED 372 (639)
T ss_pred hhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCc
Confidence 2357899999999999999999998888877653 22 2345556666666665443
No 171
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.71 E-value=6e-05 Score=51.50 Aligned_cols=34 Identities=38% Similarity=0.628 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008613 148 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181 (559)
Q Consensus 148 ~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~ 181 (559)
+++|+++|.+|..++++++|+.+|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 5789999999999999999999999999999974
No 172
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.71 E-value=0.00026 Score=81.14 Aligned_cols=114 Identities=13% Similarity=0.077 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008613 70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK 149 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~k 149 (559)
....|...|-.|.+.+++..||..|+.+++.+|.+.+ +|..+|.+|...|+|..|++.|+++..++|.+.-
T Consensus 561 ~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n---------~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y 631 (1238)
T KOG1127|consen 561 CKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYN---------LWLGLGEAYPESGRYSHALKVFTKASLLRPLSKY 631 (1238)
T ss_pred HHhhhhhccccccCccchhhHHHHHHHHhcCCchhHH---------HHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHH
Confidence 3455666999999999999999999999999999866 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008613 150 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAK 192 (559)
Q Consensus 150 al~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~ 192 (559)
+.|..+.....+|+|.+|+..+...+............+.+..
T Consensus 632 ~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ 674 (1238)
T KOG1127|consen 632 GRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESV 674 (1238)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 9999999999999999999999998887665555555554443
No 173
>PRK10941 hypothetical protein; Provisional
Probab=97.70 E-value=0.00036 Score=71.18 Aligned_cols=79 Identities=19% Similarity=0.259 Sum_probs=73.6
Q ss_pred hhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008613 108 EGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIAD 186 (559)
Q Consensus 108 e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~ 186 (559)
....+....+.|+-.+|.+.++|+.|+.+++.++.++|+++.-+.-||.+|..+|.+..|+.||+..++.+|+++.+..
T Consensus 175 ~~~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 175 DNIEVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred CHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 3567788899999999999999999999999999999999999999999999999999999999999999999987543
No 174
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.67 E-value=9.5e-05 Score=53.96 Aligned_cols=39 Identities=23% Similarity=0.181 Sum_probs=19.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008613 117 SLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRG 155 (559)
Q Consensus 117 ~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG 155 (559)
|+.+|.+|..+|++++|++.|+++|+.+|+++.+++.+|
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 444455555555555555555555555555555444444
No 175
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.65 E-value=5.3e-05 Score=52.38 Aligned_cols=34 Identities=21% Similarity=0.333 Sum_probs=31.7
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008613 136 VGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVS 169 (559)
Q Consensus 136 ~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~ 169 (559)
.|+++|+++|+++.+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999999999999999999999999963
No 176
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=0.00086 Score=73.38 Aligned_cols=128 Identities=17% Similarity=0.211 Sum_probs=97.7
Q ss_pred HHHHHHhhCCChHHHHHHHHHHHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 008613 24 KCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQG 103 (559)
Q Consensus 24 ~~a~e~l~~~~pee~~~~~~~~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~ 103 (559)
-.+....++++.++......++...-|++ ...++-+-.++.+.++|++|+.. ++..+.
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~pdd------------------~~a~~cKvValIq~~ky~~ALk~----ikk~~~ 74 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIVPDD------------------EDAIRCKVVALIQLDKYEDALKL----IKKNGA 74 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcCCCc------------------HhhHhhhHhhhhhhhHHHHHHHH----HHhcch
Confidence 34444555666667766777777776666 77788888889999999999843 333332
Q ss_pred CCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008613 104 IHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG 182 (559)
Q Consensus 104 ~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~ 182 (559)
+.. .....+..+.|++++++.++|+.+++ .+++...+.+..+|++++.+++|++|++.|+..++.+-++.
T Consensus 75 ~~~------~~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~ 144 (652)
T KOG2376|consen 75 LLV------INSFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQ 144 (652)
T ss_pred hhh------cchhhHHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchH
Confidence 111 11133789999999999999999998 56888899999999999999999999999999988776553
No 177
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.00013 Score=71.86 Aligned_cols=76 Identities=14% Similarity=0.095 Sum_probs=68.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008613 119 NSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI 194 (559)
Q Consensus 119 nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~ 194 (559)
--|.+|+.-++|..||..|.++|.++|..+.+|-+|+.+|+.+++|+....|++++++++|+....+..|+.....
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~ 90 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQ 90 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHh
Confidence 3466777888999999999999999999999999999999999999999999999999999988887777766444
No 178
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.62 E-value=0.00038 Score=62.79 Aligned_cols=62 Identities=24% Similarity=0.281 Sum_probs=57.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008613 119 NSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 180 (559)
Q Consensus 119 nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~ 180 (559)
..|.+.-..|+.+.|++.|.++|.+.|.++.+|.+|+++|.-.|+.++|++|+++++++.-+
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~ 109 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGD 109 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCc
Confidence 45677778899999999999999999999999999999999999999999999999999754
No 179
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.61 E-value=0.00015 Score=52.97 Aligned_cols=43 Identities=28% Similarity=0.346 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008613 148 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD 190 (559)
Q Consensus 148 ~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~ 190 (559)
+.+++.+|.+|..+|++++|++.|+++++.+|+|+.++..++.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3578999999999999999999999999999999999988865
No 180
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.55 E-value=0.00098 Score=63.67 Aligned_cols=103 Identities=15% Similarity=0.187 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--
Q 008613 70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNL-QGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK-- 146 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~-p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~-- 146 (559)
..+..+.+|+.+...|+|.||..+|.+++.-. -.+ ...+..++.+.+..+++..|....+.+.+.+|.
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d---------~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r 158 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHD---------AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFR 158 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCC---------HHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccC
Confidence 36667789999999999999999999998632 222 348889999999999999999999999999986
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008613 147 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181 (559)
Q Consensus 147 ~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~ 181 (559)
.+..++..|.+|...|++++|...|+-++...|+-
T Consensus 159 ~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~ 193 (251)
T COG4700 159 SPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP 193 (251)
T ss_pred CCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH
Confidence 57889999999999999999999999999988764
No 181
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.54 E-value=0.0002 Score=48.57 Aligned_cols=32 Identities=41% Similarity=0.667 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008613 149 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 180 (559)
Q Consensus 149 kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~ 180 (559)
++|+.+|.+|..+|+|++|+.+|++++.++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 34445555555555555555555555555544
No 182
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=97.51 E-value=0.00085 Score=70.81 Aligned_cols=107 Identities=13% Similarity=0.216 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC--------C-chhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIH--------S-SEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVL 141 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~--------~-~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL 141 (559)
.+.....+-.+|++++|..|+-.|..+|+++..-. . .+...+...+...+..||+++++.+.|+....+.|
T Consensus 176 l~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI 255 (569)
T PF15015_consen 176 LQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSI 255 (569)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhh
Confidence 33444566677777888888888888877765321 1 13455666777889999999999999999999999
Q ss_pred HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613 142 AYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV 177 (559)
Q Consensus 142 ~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l 177 (559)
-++|-+..-|++++.++..|.+|.+|...+--+.-+
T Consensus 256 ~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ym 291 (569)
T PF15015_consen 256 NLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADYM 291 (569)
T ss_pred hcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888777554
No 183
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.49 E-value=0.0017 Score=65.93 Aligned_cols=153 Identities=11% Similarity=0.092 Sum_probs=110.8
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008613 81 LYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKD 160 (559)
Q Consensus 81 ~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~ 160 (559)
+.+..+|.+||++..--.+..|.... .+.-+|.||+...+|..|..+|++...+.|...++.+..++.+++
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rA---------gLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRA---------GLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYK 90 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchH---------HHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH
Confidence 47788999999998888887775533 678899999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchhhhhchhhhccCCCCCCCCchhhhhhhcCCCC
Q 008613 161 IGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIEEITEEVGAVSSGSHRSSGTEYLAREKADPS 240 (559)
Q Consensus 161 lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i~e~~e~~~~~~~~~~~~s~~~~~~~e~~~s~ 240 (559)
.+.+.+|+....... +++..++..-.++..++-.++...-.+..++....+. .
T Consensus 91 A~i~ADALrV~~~~~----D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en--------------------~--- 143 (459)
T KOG4340|consen 91 ACIYADALRVAFLLL----DNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN--------------------E--- 143 (459)
T ss_pred hcccHHHHHHHHHhc----CCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC--------------------c---
Confidence 999999997765432 4466777666676666554443333333332211100 0
Q ss_pred CCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHHHH
Q 008613 241 KSEHSANGRGSSTKPEFLPDLKDDPESIRSFQNFIS 276 (559)
Q Consensus 241 ~~~~~~~~~~~~~~~~~l~~l~~~PEai~~~~~~i~ 276 (559)
........+.+..-+.|+++++.|+..+.
T Consensus 144 -------Ad~~in~gCllykegqyEaAvqkFqaAlq 172 (459)
T KOG4340|consen 144 -------ADGQINLGCLLYKEGQYEAAVQKFQAALQ 172 (459)
T ss_pred -------cchhccchheeeccccHHHHHHHHHHHHh
Confidence 01112233444555679999999998876
No 184
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.48 E-value=0.00092 Score=69.09 Aligned_cols=117 Identities=18% Similarity=0.074 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHH--HcC--CHHHHHHHHHHHHHcCCC
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYL--KTK--QYDECIKVGSEVLAYDAK 146 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~yl--klg--~y~eAi~~~~~AL~ldP~ 146 (559)
.+.+.-.-.+|++.+|++.|.+.+...-+.+.+. +..+++.++. ..| +|.+|...|++.....+.
T Consensus 131 lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~-----------~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~ 199 (290)
T PF04733_consen 131 LELLALAVQILLKMNRPDLAEKELKNMQQIDEDS-----------ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGS 199 (290)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCH-----------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcH-----------HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCC
Confidence 3444456668899999999999998876653332 4555555443 344 699999999999888889
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 008613 147 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE 198 (559)
Q Consensus 147 ~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~ 198 (559)
++..+...+.++..+|+|++|...++.++..+|+++.+..++..+...+++.
T Consensus 200 t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 200 TPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999888887776666543
No 185
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.48 E-value=0.0055 Score=67.98 Aligned_cols=105 Identities=16% Similarity=0.035 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 150 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka 150 (559)
.+.|..+|.++...++.+.|.+.|...++.+|..+. +|.-++.+-.+.|..-.|...++++...+|+++..
T Consensus 685 ~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ip---------LWllLakleEk~~~~~rAR~ildrarlkNPk~~~l 755 (913)
T KOG0495|consen 685 HKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIP---------LWLLLAKLEEKDGQLVRARSILDRARLKNPKNALL 755 (913)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCch---------HHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchh
Confidence 334444444444444444454455554444444433 44444444444444444544555544445554444
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008613 151 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI 184 (559)
Q Consensus 151 l~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a 184 (559)
|+..-..-+..|+.+.|.....+||.-+|.+...
T Consensus 756 wle~Ir~ElR~gn~~~a~~lmakALQecp~sg~L 789 (913)
T KOG0495|consen 756 WLESIRMELRAGNKEQAELLMAKALQECPSSGLL 789 (913)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchh
Confidence 4444444444455555555555555444444333
No 186
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.48 E-value=0.00024 Score=48.13 Aligned_cols=33 Identities=21% Similarity=0.275 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008613 115 ACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN 147 (559)
Q Consensus 115 ~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~ 147 (559)
.+|+++|.+|+.+|+|++|+.+|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 479999999999999999999999999999985
No 187
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.47 E-value=0.0073 Score=66.38 Aligned_cols=144 Identities=13% Similarity=0.127 Sum_probs=93.5
Q ss_pred HHHHHHHHHhhCCChHHHHHHHHHHHccC-cHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008613 21 EDLKCAAEQLTHTPPEEVAEIGEKLANAS-PEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKK 99 (559)
Q Consensus 21 edl~~a~e~l~~~~pee~~~~~~~~~~~~-pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~ 99 (559)
++..+..-++-..-|++..+...++.++- .+.+..+++-...... ........++++-|+|+.++.++|+..|+ .
T Consensus 29 e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~-~~~~~~~~fEKAYc~Yrlnk~Dealk~~~---~ 104 (652)
T KOG2376|consen 29 EEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA-LLVINSFFFEKAYCEYRLNKLDEALKTLK---G 104 (652)
T ss_pred HHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch-hhhcchhhHHHHHHHHHcccHHHHHHHHh---c
Confidence 33344444444444666555555544442 3333333321111110 01111222689999999999999999998 2
Q ss_pred hcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------------------------------CC-CH
Q 008613 100 NLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD------------------------------AK-NV 148 (559)
Q Consensus 100 l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ld------------------------------P~-~~ 148 (559)
+++.+. .++.-+|++++++++|++|+..|...++.+ |+ ..
T Consensus 105 ~~~~~~---------~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~sy 175 (652)
T KOG2376|consen 105 LDRLDD---------KLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSY 175 (652)
T ss_pred ccccch---------HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchH
Confidence 223332 266778999999999999999999986432 22 34
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613 149 KALYRRGQAYKDIGRLEEAVSDLSNAHEV 177 (559)
Q Consensus 149 kal~~rG~A~~~lg~~eeAi~dlekAl~l 177 (559)
.-+|+.+.++...|+|.+|++.+++++.+
T Consensus 176 el~yN~Ac~~i~~gky~qA~elL~kA~~~ 204 (652)
T KOG2376|consen 176 ELLYNTACILIENGKYNQAIELLEKALRI 204 (652)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 67999999999999999999999999554
No 188
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.47 E-value=0.0071 Score=55.22 Aligned_cols=121 Identities=23% Similarity=0.181 Sum_probs=89.9
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHcCC
Q 008613 67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMS-CYLKTKQYDECIKVGSEVLAYDA 145 (559)
Q Consensus 67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~-~ylklg~y~eAi~~~~~AL~ldP 145 (559)
.......+...|..+...++|..++..+.+++...+.... ....... +|...++++.|+..+.+++..+|
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 161 (291)
T COG0457 91 LPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDL---------AEALLALGALYELGDYEEALELYEKALELDP 161 (291)
T ss_pred ccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcch---------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 4455667777888888888888888888888887665522 3333444 88888888888888888888777
Q ss_pred ---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHH
Q 008613 146 ---KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD-DGTIADVLRDAKEILM 196 (559)
Q Consensus 146 ---~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~-~~~a~~~L~~a~~~l~ 196 (559)
.....++.++..+...+++++|+..+.+++...+. .......+........
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 162 ELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred CccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 46677777777788888888888888888888888 4566666655555443
No 189
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.46 E-value=0.0013 Score=68.12 Aligned_cols=109 Identities=15% Similarity=0.136 Sum_probs=67.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcC----------------------------
Q 008613 77 QGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK---------------------------- 128 (559)
Q Consensus 77 ~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg---------------------------- 128 (559)
.|-|+|..|+|++|+..|+-+.+.+..... ++.|+|.|++-+|
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~e---------l~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahk 133 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKDDAPAE---------LGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHK 133 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccCCCCcc---------cchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Confidence 688999999999999999988764333222 4444444444444
Q ss_pred --------------------------------CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008613 129 --------------------------------QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHE 176 (559)
Q Consensus 129 --------------------------------~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~ 176 (559)
.|.+||+.|.++|.-+|+....-...+.||+.+.-|+-+...+.-.+.
T Consensus 134 lndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~ 213 (557)
T KOG3785|consen 134 LNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR 213 (557)
T ss_pred hCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 455566666666655555555555566666666666666666666666
Q ss_pred hCCCCHHHHHHHHHHHHH
Q 008613 177 VSPDDGTIADVLRDAKEI 194 (559)
Q Consensus 177 l~P~~~~a~~~L~~a~~~ 194 (559)
..|+.+.+.....-...+
T Consensus 214 q~pdStiA~NLkacn~fR 231 (557)
T KOG3785|consen 214 QFPDSTIAKNLKACNLFR 231 (557)
T ss_pred hCCCcHHHHHHHHHHHhh
Confidence 666665555444443333
No 190
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.44 E-value=0.00063 Score=64.67 Aligned_cols=80 Identities=16% Similarity=0.094 Sum_probs=55.7
Q ss_pred HHHhHHhHHHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCC-
Q 008613 61 DAQMNYEFNAAKMLKKQGNELYSE----------GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ- 129 (559)
Q Consensus 61 ~~~~~~~~~~a~~lk~~Gn~~~k~----------g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~- 129 (559)
.+.+..++..++.|.+-|..++.. .-|.+||..|++||.++|...+ +++++|.+|..++.
T Consensus 15 ea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hd---------Alw~lGnA~ts~A~l 85 (186)
T PF06552_consen 15 EAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHD---------ALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HH---------HHHHHHHHHHHHHHH
T ss_pred HHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHH---------HHHHHHHHHHHHHhh
Confidence 333334444466666666665543 3467899999999999999865 89999999987653
Q ss_pred ----------HHHHHHHHHHHHHcCCCCHH
Q 008613 130 ----------YDECIKVGSEVLAYDAKNVK 149 (559)
Q Consensus 130 ----------y~eAi~~~~~AL~ldP~~~k 149 (559)
|++|..+|.+|+.++|+|..
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~ 115 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDEDPNNEL 115 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred cCChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 88899999999999998854
No 191
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.42 E-value=0.012 Score=56.81 Aligned_cols=119 Identities=13% Similarity=0.058 Sum_probs=92.6
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHH
Q 008613 55 TMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 134 (559)
Q Consensus 55 aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi 134 (559)
...+.+...........-.....+..++..++|++|+..+..++..- . ...+...+-.+++.+.+.+|+|++|+
T Consensus 73 ~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t-~-----De~lk~l~~lRLArvq~q~~k~D~AL 146 (207)
T COG2976 73 AAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQT-K-----DENLKALAALRLARVQLQQKKADAAL 146 (207)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccc-h-----hHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 33344444443445556777889999999999999999999999742 2 24567778889999999999999999
Q ss_pred HHHHHHHHcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008613 135 KVGSEVLAYDAKN-VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181 (559)
Q Consensus 135 ~~~~~AL~ldP~~-~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~ 181 (559)
...+... ++.+ +..-..||.++...|+-++|+..|++++..+++.
T Consensus 147 ~~L~t~~--~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 147 KTLDTIK--EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHhccc--cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 9887654 3332 3456789999999999999999999999988443
No 192
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.00091 Score=68.84 Aligned_cols=85 Identities=19% Similarity=0.126 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008613 113 LLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK----NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVL 188 (559)
Q Consensus 113 ~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~----~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L 188 (559)
.+.-|-.-|.-|++.++|..|+..|++.|+.... ++..|.+|+.|.+.+|+|..|+.|+.+++.++|++..++.+=
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 4455667799999999999999999999998654 467899999999999999999999999999999998777666
Q ss_pred HHHHHHHHh
Q 008613 189 RDAKEILMK 197 (559)
Q Consensus 189 ~~a~~~l~~ 197 (559)
..+...|++
T Consensus 160 Akc~~eLe~ 168 (390)
T KOG0551|consen 160 AKCLLELER 168 (390)
T ss_pred hHHHHHHHH
Confidence 666666665
No 193
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.37 E-value=0.00025 Score=74.57 Aligned_cols=128 Identities=16% Similarity=0.162 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC
Q 008613 70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY----DA 145 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l----dP 145 (559)
....+-++||.||-.|+|+.||..-..-|.+.....+ +...-.++.|+|.||.-+|+|+.|+++|..++.+ .-
T Consensus 194 qGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGD---rAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~ 270 (639)
T KOG1130|consen 194 QGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGD---RAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGN 270 (639)
T ss_pred hcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhh---HHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcc
Confidence 3455667888999999999999998888887666544 2333458999999999999999999999987654 22
Q ss_pred C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHhhcC
Q 008613 146 K--NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD------GTIADVLRDAKEILMKEDG 200 (559)
Q Consensus 146 ~--~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~------~~a~~~L~~a~~~l~~~~~ 200 (559)
. .+...|-+|.+|.-+.+|+.||.++.+-|.+...- ..+...|+.+...++.+.+
T Consensus 271 r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~k 333 (639)
T KOG1130|consen 271 RTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRK 333 (639)
T ss_pred hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHH
Confidence 2 35678999999999999999999999888764321 1233344445555544443
No 194
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.35 E-value=0.00098 Score=75.26 Aligned_cols=126 Identities=25% Similarity=0.420 Sum_probs=109.6
Q ss_pred HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHc
Q 008613 66 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT--KQYDECIKVGSEVLAY 143 (559)
Q Consensus 66 ~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylkl--g~y~eAi~~~~~AL~l 143 (559)
..+..+..++.+||.+|..++|.+|.-.|..++.+.|.+.. ....+..|.+.||..+ ++|..++..|+-++..
T Consensus 48 v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~-----~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~ 122 (748)
T KOG4151|consen 48 VFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHH-----VVATLRSNQASCYMQLGLGEYPKAIPECELALES 122 (748)
T ss_pred HHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccch-----hhhhHHHHHHHHHhhcCccchhhhcCchhhhhhc
Confidence 34556788899999999999999999999999999985532 3566888999999875 5999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008613 144 DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM 196 (559)
Q Consensus 144 dP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~ 196 (559)
.|...++++.|+.+|..+++++-|++++.-....+|.+..+...+.+++..+.
T Consensus 123 ~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll~ 175 (748)
T KOG4151|consen 123 QPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLLE 175 (748)
T ss_pred cchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHh
Confidence 99999999999999999999999999999888999999777776666666663
No 195
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.29 E-value=0.00071 Score=72.54 Aligned_cols=125 Identities=16% Similarity=0.106 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------
Q 008613 70 AAKMLKKQGNELYSEGRFSNALQKYLLAK-KNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLA------ 142 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL-~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~------ 142 (559)
.+..+..+.+.+|-.|+|..|.+.+...- ...+.. .....-..+.+|.|+|.++++++.|..++.+|.+||+
T Consensus 239 s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~-~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL 317 (696)
T KOG2471|consen 239 SSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGG-TITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL 317 (696)
T ss_pred CcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCc-cccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence 36678889999999999999999875431 111110 0011223456788999999999999999999999996
Q ss_pred ---cCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008613 143 ---YDA---------KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 195 (559)
Q Consensus 143 ---ldP---------~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l 195 (559)
+.| ..-..+|+.|..|+..|+.-+|.++|.+++...-.++.+|-++.++.-..
T Consensus 318 ~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 318 RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 122 23578999999999999999999999999999999999999999986543
No 196
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.28 E-value=0.017 Score=58.19 Aligned_cols=109 Identities=17% Similarity=0.068 Sum_probs=66.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCCHHHH
Q 008613 76 KQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT----KQYDECIKVGSEVLAYDAKNVKAL 151 (559)
Q Consensus 76 ~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylkl----g~y~eAi~~~~~AL~ldP~~~kal 151 (559)
..-.++.+..+++-|.....+..+++.+. .+..+|.++.++ .++.+|.-.|++.-+..|..+..+
T Consensus 142 l~VqI~lk~~r~d~A~~~lk~mq~ided~-----------tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~ll 210 (299)
T KOG3081|consen 142 LNVQILLKMHRFDLAEKELKKMQQIDEDA-----------TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLL 210 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccchHH-----------HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHH
Confidence 34455666666666666666666553332 334444444432 356677777777766666666677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008613 152 YRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 195 (559)
Q Consensus 152 ~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l 195 (559)
...+.|+..+++|++|...++.+|..++++++...++-.+-..+
T Consensus 211 nG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~ 254 (299)
T KOG3081|consen 211 NGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHL 254 (299)
T ss_pred ccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh
Confidence 77777777777777777777777777777766665555443333
No 197
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.17 E-value=0.007 Score=61.69 Aligned_cols=93 Identities=23% Similarity=0.216 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC
Q 008613 70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY----DA 145 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l----dP 145 (559)
.+..+.+.|-.+|+.|+|++|++.|..|++.....|. +-||++.|+++.++|..|+++..+.++. .|
T Consensus 143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl---------lAYniALaHy~~~qyasALk~iSEIieRG~r~HP 213 (459)
T KOG4340|consen 143 EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL---------LAYNLALAHYSSRQYASALKHISEIIERGIRQHP 213 (459)
T ss_pred ccchhccchheeeccccHHHHHHHHHHHHhhcCCCch---------hHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCC
Confidence 4677888999999999999999999999998777665 8899999999999999999999888864 22
Q ss_pred CC-------------------------HHHHHHHHHHHHHcCCHHHHHHHH
Q 008613 146 KN-------------------------VKALYRRGQAYKDIGRLEEAVSDL 171 (559)
Q Consensus 146 ~~-------------------------~kal~~rG~A~~~lg~~eeAi~dl 171 (559)
+. ..++...+.+++..++++.|.+.+
T Consensus 214 ElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaL 264 (459)
T KOG4340|consen 214 ELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEAL 264 (459)
T ss_pred ccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHh
Confidence 11 245666677777777777776555
No 198
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.16 E-value=0.0023 Score=48.93 Aligned_cols=49 Identities=18% Similarity=0.231 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 008613 149 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 197 (559)
Q Consensus 149 kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~ 197 (559)
.++|.++.++..+|+|++|...++.+|+++|+|..+......+.+++.+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~k 50 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQK 50 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhc
Confidence 4678888888888888888888888888888888887777777776643
No 199
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.16 E-value=0.022 Score=51.97 Aligned_cols=108 Identities=23% Similarity=0.294 Sum_probs=88.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHH
Q 008613 80 ELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK-NVKALYRRGQAY 158 (559)
Q Consensus 80 ~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~-~~kal~~rG~A~ 158 (559)
+++..+++++|+..|.+++...+.... ....+..++..+...++++.++..+.+++...+. ....+..++.++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNE------LAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLY 212 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccc------hHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHH
Confidence 899999999999999999886553011 2346666677788999999999999999999999 799999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008613 159 KDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE 193 (559)
Q Consensus 159 ~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~ 193 (559)
...+++++|+..+.+++...|........+..+..
T Consensus 213 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (291)
T COG0457 213 LKLGKYEEALEYYEKALELDPDNAEALYNLALLLL 247 (291)
T ss_pred HHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHH
Confidence 99999999999999999999984444444444433
No 200
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.14 E-value=0.051 Score=53.87 Aligned_cols=123 Identities=20% Similarity=0.194 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008613 70 AAKMLKKQGNELYSE-GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV 148 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~-g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ 148 (559)
.++.+...|..|-.. .++..||.+|..+-+....+ +.....-.|+...+..--.+++|.+||..|+++.+..-+|.
T Consensus 112 aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e---es~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 112 AAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE---ESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 477777888888777 89999999999999886554 33455567888899888899999999999999987665553
Q ss_pred -------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHH
Q 008613 149 -------KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI--ADVLRDAKEIL 195 (559)
Q Consensus 149 -------kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a--~~~L~~a~~~l 195 (559)
..++.-|.||+-..+.-.+...+++...++|..... ...|..+...+
T Consensus 189 LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~ai 244 (288)
T KOG1586|consen 189 LLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAI 244 (288)
T ss_pred HHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHH
Confidence 356677888888899999999999999999976432 33444444444
No 201
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.14 E-value=0.0031 Score=70.19 Aligned_cols=128 Identities=13% Similarity=-0.050 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008613 72 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKAL 151 (559)
Q Consensus 72 ~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal 151 (559)
..++-++..|-..|+|++|+.+.++||.+.|..++ +|...|.+|-+.|++.+|....+.|-.+|+.+--.-
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~e---------ly~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiN 265 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVE---------LYMTKARILKHAGDLKEAAEAMDEARELDLADRYIN 265 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHH---------HHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHH
Confidence 45677899999999999999999999999998866 999999999999999999999999999999988888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC-----HHHHHHH--HHHHHHHHhhcCCCCCccch
Q 008613 152 YRRGQAYKDIGRLEEAVSDLSNAHEVS--PDD-----GTIADVL--RDAKEILMKEDGHHGPRGLL 208 (559)
Q Consensus 152 ~~rG~A~~~lg~~eeAi~dlekAl~l~--P~~-----~~a~~~L--~~a~~~l~~~~~~~~~~~~~ 208 (559)
...+..++..|++++|...+....+-+ |.. ..+|..+ +.+..+.++...+.+.+..+
T Consensus 266 sK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 266 SKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 888888899999999999998765543 211 2345444 44555555555555555443
No 202
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.10 E-value=0.00035 Score=48.26 Aligned_cols=34 Identities=24% Similarity=0.195 Sum_probs=31.2
Q ss_pred HHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHH
Q 008613 93 KYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIK 135 (559)
Q Consensus 93 ~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~ 135 (559)
+|++||+++|.++. +|+|+|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~---------a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAE---------AYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHH---------HHHHHHHHHHHCcCHHhhcC
Confidence 48999999999976 99999999999999999873
No 203
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.10 E-value=0.027 Score=59.40 Aligned_cols=117 Identities=16% Similarity=0.053 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 150 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka 150 (559)
+......+..+.+.|++++|.+....+++...+. -++.+ .-.++.+++..-++..++.++..|+++..
T Consensus 263 p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~-----------~L~~~-~~~l~~~d~~~l~k~~e~~l~~h~~~p~L 330 (400)
T COG3071 263 PELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP-----------RLCRL-IPRLRPGDPEPLIKAAEKWLKQHPEDPLL 330 (400)
T ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh-----------hHHHH-HhhcCCCCchHHHHHHHHHHHhCCCChhH
Confidence 5555667778999999999999999999864432 11122 22346789999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcC
Q 008613 151 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG 200 (559)
Q Consensus 151 l~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~ 200 (559)
++.+|..|+..+.|.+|-..|+.+++..|.. ..+..++.+..++++...
T Consensus 331 ~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g~~~~ 379 (400)
T COG3071 331 LSTLGRLALKNKLWGKASEALEAALKLRPSA-SDYAELADALDQLGEPEE 379 (400)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcCChHH
Confidence 9999999999999999999999999988765 467778888877765544
No 204
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.09 E-value=0.005 Score=67.89 Aligned_cols=120 Identities=15% Similarity=0.150 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHH
Q 008613 52 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD 131 (559)
Q Consensus 52 e~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~ 131 (559)
.+..+.+-++...+..++-+--+...|..+..+|+.++|++.|++++.... +...+...|++.++.||.-+.+|+
T Consensus 248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~-----~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQS-----EWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchh-----hHHhHHHHHHHHHHHHHHHHchHH
Confidence 345556666677777788888899999999999999999999999985322 235567789999999999999999
Q ss_pred HHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHH
Q 008613 132 ECIKVGSEVLAYDAK-NVKALYRRGQAYKDIGRL-------EEAVSDLSNAHE 176 (559)
Q Consensus 132 eAi~~~~~AL~ldP~-~~kal~~rG~A~~~lg~~-------eeAi~dlekAl~ 176 (559)
+|..++.+.++.+.- ..-++|-.|.+|..+++. ++|...|+++-.
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 999999999986443 245677789999999998 555555555443
No 205
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=0.014 Score=64.74 Aligned_cols=105 Identities=18% Similarity=0.220 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 150 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka 150 (559)
-..+++.+...|+..+|..+++.|...+...+.+. .+...+....+++.||+++.+.+.|++.+.+|-+.+|.++-.
T Consensus 354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~---~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~ 430 (872)
T KOG4814|consen 354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDN---YSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLC 430 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchh---hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHH
Confidence 45688999999999999999999999999877653 244458899999999999999999999999999999999988
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008613 151 LYRRGQAYKDIGRLEEAVSDLSNAHEVS 178 (559)
Q Consensus 151 l~~rG~A~~~lg~~eeAi~dlekAl~l~ 178 (559)
.+..-.+...-+.-++|+..+.+.....
T Consensus 431 q~~~~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 431 QLLMLQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence 8888888899999999999887776553
No 206
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.99 E-value=0.0032 Score=65.40 Aligned_cols=107 Identities=16% Similarity=0.134 Sum_probs=83.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008613 79 NELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAY 158 (559)
Q Consensus 79 n~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~ 158 (559)
..++...+|..||.++.-.+.+..... ..+-..+|.||+.+|+|++|+..|+.+...+--+.+.+.+++.++
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE--------~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~ 101 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEE--------DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCK 101 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhh--------HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHH
Confidence 356778899999999888875543332 235567899999999999999999999987777889999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 008613 159 KDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 197 (559)
Q Consensus 159 ~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~ 197 (559)
..+|.|.+|....+++ |+++--...+=.+--++++
T Consensus 102 FyLg~Y~eA~~~~~ka----~k~pL~~RLlfhlahklnd 136 (557)
T KOG3785|consen 102 FYLGQYIEAKSIAEKA----PKTPLCIRLLFHLAHKLND 136 (557)
T ss_pred HHHHHHHHHHHHHhhC----CCChHHHHHHHHHHHHhCc
Confidence 9999999998776654 6666555555555444443
No 207
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.99 E-value=0.062 Score=54.01 Aligned_cols=125 Identities=12% Similarity=0.053 Sum_probs=97.8
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHc--------CCHHHHHHHHH
Q 008613 67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT--------KQYDECIKVGS 138 (559)
Q Consensus 67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylkl--------g~y~eAi~~~~ 138 (559)
.+-.-+.....+-.+++.++|++|+...++-+.+.|.+++ ...+++-+|.+++.. .--.+|+..+.
T Consensus 67 s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n------~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~ 140 (254)
T COG4105 67 SPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN------ADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFK 140 (254)
T ss_pred CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC------hhHHHHHHHHHHhccCCccccCHHHHHHHHHHHH
Confidence 3444677888999999999999999999999999999987 566788888887764 23467888999
Q ss_pred HHHHcCCCCH---HH--------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 008613 139 EVLAYDAKNV---KA--------------LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 197 (559)
Q Consensus 139 ~AL~ldP~~~---ka--------------l~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~ 197 (559)
.+|...|++. .+ =+..|.-|...|.|..|+..+++.++-.|+...+...|..+.+....
T Consensus 141 ~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~ 216 (254)
T COG4105 141 ELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYA 216 (254)
T ss_pred HHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHH
Confidence 9999999862 11 12347778888999999999999999988877666666655555433
No 208
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.96 E-value=0.021 Score=65.96 Aligned_cols=117 Identities=12% Similarity=0.031 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008613 72 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKAL 151 (559)
Q Consensus 72 ~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal 151 (559)
..|....+.|.+.|++++|.+.|.+. |..|+ ..+|..+..++...|+++.|...++++++++|++...|
T Consensus 463 ~~y~~li~~l~r~G~~~eA~~~~~~~----~~~p~-------~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y 531 (697)
T PLN03081 463 MHYACMIELLGREGLLDEAYAMIRRA----PFKPT-------VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNY 531 (697)
T ss_pred cchHhHHHHHHhcCCHHHHHHHHHHC----CCCCC-------HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcch
Confidence 34666778899999999999988763 33333 34788888899999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--------------------------CCCCHHHHHHHHHHHHHHHhhc
Q 008613 152 YRRGQAYKDIGRLEEAVSDLSNAHEV--------------------------SPDDGTIADVLRDAKEILMKED 199 (559)
Q Consensus 152 ~~rG~A~~~lg~~eeAi~dlekAl~l--------------------------~P~~~~a~~~L~~a~~~l~~~~ 199 (559)
..+..+|...|++++|.+.++...+. +|...+++..|..+...+++.+
T Consensus 532 ~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g 605 (697)
T PLN03081 532 VVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYG 605 (697)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999876543 3444567777777777776543
No 209
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.92 E-value=0.00031 Score=75.36 Aligned_cols=77 Identities=19% Similarity=0.105 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008613 116 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAK 192 (559)
Q Consensus 116 ~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~ 192 (559)
.+-+-+.-+++-+.|+.|+..|.+||+++|+++..+-+|+.+|...++|..|+.|+.+|++++|.....+-+-+.+.
T Consensus 6 e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~ 82 (476)
T KOG0376|consen 6 ELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAV 82 (476)
T ss_pred hhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHH
Confidence 34466777888999999999999999999999999999999999999999999999999999998755444443333
No 210
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.86 E-value=0.0095 Score=59.84 Aligned_cols=111 Identities=18% Similarity=0.206 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008613 69 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV 148 (559)
Q Consensus 69 ~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ 148 (559)
..+.....+|....+-|+.+.|-.+|+++-+....... -.....++.|.+.+|+-.++|..|...|++.+..||.++
T Consensus 210 ~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~---~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~ 286 (366)
T KOG2796|consen 210 QEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDG---LQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNA 286 (366)
T ss_pred ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhc---cchhHHHHhhhhhheecccchHHHHHHHhhccccCCCch
Confidence 34555566677777777766666666643322111100 112345777889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008613 149 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG 182 (559)
Q Consensus 149 kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~ 182 (559)
.+..+.+.|+..+|+..+|++.++.++.+.|...
T Consensus 287 ~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 287 VANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 9999999999999999999999999999999853
No 211
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.83 E-value=0.0021 Score=70.28 Aligned_cols=110 Identities=13% Similarity=0.059 Sum_probs=96.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008613 76 KQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRG 155 (559)
Q Consensus 76 ~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG 155 (559)
..|..+...|+...|+.++..|+.+.|.... .-..|+|.+.++-+-..+|-..+.++|.++-..+-.+|.+|
T Consensus 612 ~aglywr~~gn~~~a~~cl~~a~~~~p~~~~--------v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g 683 (886)
T KOG4507|consen 612 EAGLYWRAVGNSTFAIACLQRALNLAPLQQD--------VPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLG 683 (886)
T ss_pred cccceeeecCCcHHHHHHHHHHhccChhhhc--------ccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcc
Confidence 3444555688999999999999998776543 25779999999999999999999999999988899999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008613 156 QAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE 193 (559)
Q Consensus 156 ~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~ 193 (559)
.+|+.+.+.+.|++.|+.|++++|+++++.+.|..+.-
T Consensus 684 ~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 684 NAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred hhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 99999999999999999999999999999888776644
No 212
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.82 E-value=0.031 Score=66.20 Aligned_cols=106 Identities=14% Similarity=0.055 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK---- 146 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~---- 146 (559)
...+...|..++..|+|++|+..|.+++........ ......++.+++.+++..|++++|...+.+++.+...
T Consensus 491 ~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~---~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~ 567 (903)
T PRK04841 491 IVATSVLGEVHHCKGELARALAMMQQTEQMARQHDV---YHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLE 567 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc---hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc
Confidence 445677888999999999999999999987664432 1223447789999999999999999999999876221
Q ss_pred ----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008613 147 ----NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP 179 (559)
Q Consensus 147 ----~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P 179 (559)
....+..+|.++...|++++|...+++++.+..
T Consensus 568 ~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~ 604 (903)
T PRK04841 568 QLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS 604 (903)
T ss_pred cccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence 233466789999999999999999999988643
No 213
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.82 E-value=0.0019 Score=43.79 Aligned_cols=30 Identities=17% Similarity=0.236 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008613 116 CSLNSMSCYLKTKQYDECIKVGSEVLAYDA 145 (559)
Q Consensus 116 ~~~nlA~~ylklg~y~eAi~~~~~AL~ldP 145 (559)
+|+.+|.+|..+|++++|+..|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455555555555555555555555555555
No 214
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.80 E-value=0.0022 Score=43.49 Aligned_cols=34 Identities=35% Similarity=0.677 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008613 148 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181 (559)
Q Consensus 148 ~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~ 181 (559)
.++|+.+|.+|..+|++++|+..|+++++++|++
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 3689999999999999999999999999999853
No 215
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.72 E-value=0.0043 Score=60.67 Aligned_cols=80 Identities=11% Similarity=-0.047 Sum_probs=72.4
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008613 111 TLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD 190 (559)
Q Consensus 111 ~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~ 190 (559)
+.++.+++.||..|-.+|-+.-|..+++++|.+.|+-+.++..+|.-+...|+|+.|.+.|...+++||.+.-+..+.+.
T Consensus 62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi 141 (297)
T COG4785 62 EERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI 141 (297)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce
Confidence 34677999999999999999999999999999999999999999999999999999999999999999998665544433
No 216
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.69 E-value=0.091 Score=54.58 Aligned_cols=150 Identities=17% Similarity=0.060 Sum_probs=86.6
Q ss_pred HHHHHHHhhCCChHHHHHHHHHH-----HccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008613 23 LKCAAEQLTHTPPEEVAEIGEKL-----ANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLA 97 (559)
Q Consensus 23 l~~a~e~l~~~~pee~~~~~~~~-----~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kA 97 (559)
+..-++.+...+|+-+.+....+ .+.+.-++....+++.-........-+.....+..++.+|++.+|...+.+.
T Consensus 50 i~a~a~kL~ssDP~~Vmart~a~gl~~iaa~s~v~~ak~~dqav~dav~y~~arEk~h~~aai~~~~g~~h~a~~~wdkl 129 (491)
T KOG2610|consen 50 ILASAEKLSSSDPEAVMARTFALGLVLIAAASNVEFAKKMDQAVIDAVKYGNAREKRHAKAAILWGRGKHHEAAIEWDKL 129 (491)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHhhhhhhccchhhHHHHHHHHHHHHHHHhhhHHhhhhhHHHhhccccccHHHHHHHHH
Confidence 34446677777777654433322 2222223333333333322222333356667788899999999999999999
Q ss_pred HHhcCCCCCc-----------------------------hhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008613 98 KKNLQGIHSS-----------------------------EGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV 148 (559)
Q Consensus 98 L~l~p~~~~~-----------------------------e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ 148 (559)
|+-.|.+--. +.-+....+.--.+.|+.+.|-|++|.+..++++++++.+.
T Consensus 130 L~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~ 209 (491)
T KOG2610|consen 130 LDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDC 209 (491)
T ss_pred HHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcch
Confidence 9887765310 01112223333355566666666666666666666666666
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 008613 149 KALYRRGQAYKDIGRLEEAVSDLS 172 (559)
Q Consensus 149 kal~~rG~A~~~lg~~eeAi~dle 172 (559)
.+.+..+-++...+++.|+++...
T Consensus 210 Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 210 WASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred HHHHHHHHHHHhcchhhhHHHHHH
Confidence 666666666666666666665554
No 217
>PLN03077 Protein ECB2; Provisional
Probab=96.61 E-value=0.088 Score=62.38 Aligned_cols=118 Identities=14% Similarity=0.058 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 150 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka 150 (559)
...|....+.|.+.|++++|.+.+++. |-.|+ ..+|..+-.++...++.+.+....+++++++|+++..
T Consensus 625 ~~~y~~lv~~l~r~G~~~eA~~~~~~m----~~~pd-------~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~ 693 (857)
T PLN03077 625 LKHYACVVDLLGRAGKLTEAYNFINKM----PITPD-------PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGY 693 (857)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHC----CCCCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcch
Confidence 456777889999999999999998874 22332 2366666667778899999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------------CCCCHHHHHHHHHHHHHHHhhc
Q 008613 151 LYRRGQAYKDIGRLEEAVSDLSNAHEV--------------------------SPDDGTIADVLRDAKEILMKED 199 (559)
Q Consensus 151 l~~rG~A~~~lg~~eeAi~dlekAl~l--------------------------~P~~~~a~~~L~~a~~~l~~~~ 199 (559)
|..++.+|...|+|++|.+..+.-.+. +|...+|+..|..+..++++.+
T Consensus 694 y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g 768 (857)
T PLN03077 694 YILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASG 768 (857)
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999988766432 3445677777887777776543
No 218
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=96.59 E-value=0.017 Score=52.54 Aligned_cols=85 Identities=12% Similarity=0.193 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHH-cCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008613 114 LACSLNSMSCYLKTK---QYDECIKVGSEVLA-YDAK-NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVL 188 (559)
Q Consensus 114 ~~~~~nlA~~ylklg---~y~eAi~~~~~AL~-ldP~-~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L 188 (559)
..+.+|+|.|+.+.. +..+.|..++..++ -.|+ ...++|.++..|+.+++|+.++.++...++.+|+|..+...-
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK 111 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 457889999998766 46678888888886 4444 468999999999999999999999999999999999998888
Q ss_pred HHHHHHHHhh
Q 008613 189 RDAKEILMKE 198 (559)
Q Consensus 189 ~~a~~~l~~~ 198 (559)
..++.++.+.
T Consensus 112 ~~ied~itke 121 (149)
T KOG3364|consen 112 ETIEDKITKE 121 (149)
T ss_pred HHHHHHHhhc
Confidence 8888777543
No 219
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=96.57 E-value=0.014 Score=59.18 Aligned_cols=77 Identities=25% Similarity=0.362 Sum_probs=71.4
Q ss_pred hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008613 109 GRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIA 185 (559)
Q Consensus 109 ~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~ 185 (559)
...+......|+-..|...++++.|.....+.+.++|+++..+.-||.+|..+|.+.-|+.|++..+..+|+++.+.
T Consensus 176 ~~~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~ 252 (269)
T COG2912 176 NREILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAE 252 (269)
T ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHH
Confidence 45667778889999999999999999999999999999999999999999999999999999999999999987643
No 220
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.071 Score=54.61 Aligned_cols=117 Identities=19% Similarity=0.166 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHH------------
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGS------------ 138 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~------------ 138 (559)
.+.....+..+...+++.+|...|..++...|.... +...++.||+..|+++.|...+.
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~---------~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~ 204 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSE---------AKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAH 204 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccch---------HHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHH
Confidence 344455666666677777777777777776666544 55566666666666655443332
Q ss_pred ----------------------HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH
Q 008613 139 ----------------------EVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD--DGTIADVLRDAKEI 194 (559)
Q Consensus 139 ----------------------~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~--~~~a~~~L~~a~~~ 194 (559)
+.+..+|++..+-+.++..|...|++++|++.+-..++.+-. +..+++.|-++...
T Consensus 205 ~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~ 284 (304)
T COG3118 205 GLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEA 284 (304)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHh
Confidence 233458999999999999999999999999999888887653 44566666666555
Q ss_pred HH
Q 008613 195 LM 196 (559)
Q Consensus 195 l~ 196 (559)
++
T Consensus 285 ~g 286 (304)
T COG3118 285 FG 286 (304)
T ss_pred cC
Confidence 54
No 221
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.52 E-value=0.0096 Score=45.51 Aligned_cols=42 Identities=14% Similarity=0.158 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008613 116 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQA 157 (559)
Q Consensus 116 ~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A 157 (559)
|+|.+|..|.++|+|++|..+++.+|+++|+|..+...+..+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 889999999999999999999999999999998876554433
No 222
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.48 E-value=0.099 Score=51.89 Aligned_cols=123 Identities=14% Similarity=0.138 Sum_probs=86.6
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHc-CCHHHHHHH
Q 008613 58 ARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT-KQYDECIKV 136 (559)
Q Consensus 58 ~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylkl-g~y~eAi~~ 136 (559)
.++|.+..-....+..+...+++ |+..+..+|+.++.+++++..+... -..-+.-+.-+|.+|..- .++++||.+
T Consensus 61 A~~h~k~~skhDaat~YveA~~c-ykk~~~~eAv~cL~~aieIyt~~Gr---f~~aAk~~~~iaEiyEsdl~d~ekaI~~ 136 (288)
T KOG1586|consen 61 ADLHLKAGSKHDAATTYVEAANC-YKKVDPEEAVNCLEKAIEIYTDMGR---FTMAAKHHIEIAEIYESDLQDFEKAIAH 136 (288)
T ss_pred HHHHHhcCCchhHHHHHHHHHHH-hhccChHHHHHHHHHHHHHHHhhhH---HHHHHhhhhhHHHHHhhhHHHHHHHHHH
Confidence 33444444444455556555555 4556999999999999998665432 122233455677777654 899999999
Q ss_pred HHHHHHcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008613 137 GSEVLAYDAKN------VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI 184 (559)
Q Consensus 137 ~~~AL~ldP~~------~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a 184 (559)
|+.+-+..... -+++..-+.--..+++|.+|+..|++.....-++...
T Consensus 137 YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LL 190 (288)
T KOG1586|consen 137 YEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLL 190 (288)
T ss_pred HHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHH
Confidence 99998764432 3677777887889999999999999998876666543
No 223
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.46 E-value=0.032 Score=58.90 Aligned_cols=86 Identities=12% Similarity=0.033 Sum_probs=68.2
Q ss_pred cCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHc
Q 008613 48 ASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT 127 (559)
Q Consensus 48 ~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylkl 127 (559)
..+.+.....+.++..+...++.+..+..+|..|++.+.|.+|-.+++.++...|... .|.-+|.+|.++
T Consensus 305 l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~----------~~~~la~~~~~~ 374 (400)
T COG3071 305 LRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSAS----------DYAELADALDQL 374 (400)
T ss_pred cCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChh----------hHHHHHHHHHHc
Confidence 3344434444555555555555589999999999999999999999999999877654 577899999999
Q ss_pred CCHHHHHHHHHHHHHc
Q 008613 128 KQYDECIKVGSEVLAY 143 (559)
Q Consensus 128 g~y~eAi~~~~~AL~l 143 (559)
|+..+|-+.+++++.+
T Consensus 375 g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 375 GEPEEAEQVRREALLL 390 (400)
T ss_pred CChHHHHHHHHHHHHH
Confidence 9999999999998843
No 224
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.39 E-value=0.029 Score=58.64 Aligned_cols=108 Identities=12% Similarity=0.063 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC-CchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIH-SSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD----- 144 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~-~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ld----- 144 (559)
.+.+..+|..+-..++|++|+.+..+|+++..... ......+...++|.++.+|..+|+.-+|.++|+++.++.
T Consensus 162 lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gd 241 (518)
T KOG1941|consen 162 LQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGD 241 (518)
T ss_pred eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCC
Confidence 34466788889999999999999999999877654 333456677889999999999999999999999998763
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008613 145 -AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS 178 (559)
Q Consensus 145 -P~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~ 178 (559)
+.++..+.-.|.+|...|+.|.|..-|+.|..+-
T Consensus 242 ra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 242 RALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred hHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 4457788889999999999999999999997753
No 225
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.33 E-value=0.046 Score=54.05 Aligned_cols=97 Identities=18% Similarity=0.173 Sum_probs=73.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHH-------HHHHHHHHHHHcCC------C
Q 008613 80 ELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD-------ECIKVGSEVLAYDA------K 146 (559)
Q Consensus 80 ~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~-------eAi~~~~~AL~ldP------~ 146 (559)
.+.....+++|++.|.-||-...-.. +.....+.++..+|.+|..+++.+ .|+..|.++++... +
T Consensus 86 ~~~~~Rt~~~ai~~YkLAll~~~~~~--~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~ 163 (214)
T PF09986_consen 86 DFSGERTLEEAIESYKLALLCAQIKK--EKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMD 163 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCch
Confidence 56667789999999998886532211 113357789999999999999844 45666666665432 2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008613 147 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS 178 (559)
Q Consensus 147 ~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~ 178 (559)
....+|.+|..+..+|++++|+.+|.+++..-
T Consensus 164 ~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 164 EATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 36889999999999999999999999999753
No 226
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.26 E-value=0.081 Score=62.75 Aligned_cols=108 Identities=14% Similarity=0.051 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA----- 145 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP----- 145 (559)
+..+...|..++..|++++|..++.+++.+....... .......++..++.+++..|++++|...+.+++.+..
T Consensus 531 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~ 609 (903)
T PRK04841 531 LWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLE-QLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQ 609 (903)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc-cccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCch
Confidence 4456778999999999999999999999875543210 1112334567889999999999999999999987633
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008613 146 KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP 179 (559)
Q Consensus 146 ~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P 179 (559)
....++..+|.++...|++++|...+++++.+..
T Consensus 610 ~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~ 643 (903)
T PRK04841 610 QQLQCLAMLAKISLARGDLDNARRYLNRLENLLG 643 (903)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 2356777899999999999999999999987643
No 227
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.25 E-value=0.11 Score=49.76 Aligned_cols=103 Identities=13% Similarity=0.060 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--
Q 008613 68 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA-- 145 (559)
Q Consensus 68 ~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP-- 145 (559)
...-..+..+|+.|++.|++++|++.|.++...+... ......++++-.+.+..++|..+..+..++-.+--
T Consensus 33 esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~------~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~ 106 (177)
T PF10602_consen 33 ESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSP------GHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKG 106 (177)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCH------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc
Confidence 3346778899999999999999999999988864433 23566888999999999999999999888876532
Q ss_pred CCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008613 146 KNV----KALYRRGQAYKDIGRLEEAVSDLSNAHE 176 (559)
Q Consensus 146 ~~~----kal~~rG~A~~~lg~~eeAi~dlekAl~ 176 (559)
.++ +.....|.++...++|.+|...|-.++.
T Consensus 107 ~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 107 GDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred chHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence 222 3344567778888999999988866544
No 228
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.23 E-value=0.0075 Score=40.26 Aligned_cols=31 Identities=23% Similarity=0.358 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008613 116 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 146 (559)
Q Consensus 116 ~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~ 146 (559)
+++++|.||.++|++++|+..++++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4455555555555555555555555555554
No 229
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.18 E-value=0.043 Score=56.42 Aligned_cols=114 Identities=9% Similarity=-0.057 Sum_probs=82.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008613 74 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK-TKQYDECIKVGSEVLAYDAKNVKALY 152 (559)
Q Consensus 74 lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylk-lg~y~eAi~~~~~AL~ldP~~~kal~ 152 (559)
|....+...+.+..+.|-..|.+|+...+.... +|...|...+. .++.+.|...|+.+++..|.+...|.
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~---------vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~ 74 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYH---------VYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWL 74 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-TH---------HHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHH---------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 444555555666688889999999854333333 77788888666 56777799999999999999999998
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHH
Q 008613 153 RRGQAYKDIGRLEEAVSDLSNAHEVSPDDG---TIADVLRDAKEILM 196 (559)
Q Consensus 153 ~rG~A~~~lg~~eeAi~dlekAl~l~P~~~---~a~~~L~~a~~~l~ 196 (559)
.-..-+..+++.+.|...|++++..-|.+. .+|...-..+...+
T Consensus 75 ~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~G 121 (280)
T PF05843_consen 75 EYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYG 121 (280)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcC
Confidence 888888999999999999999998877654 46665555444443
No 230
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.18 E-value=0.0091 Score=39.83 Aligned_cols=33 Identities=30% Similarity=0.540 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008613 149 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181 (559)
Q Consensus 149 kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~ 181 (559)
.+++++|.+|..+|++++|+..|++++...|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 478999999999999999999999999999974
No 231
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.13 E-value=0.24 Score=54.11 Aligned_cols=66 Identities=15% Similarity=0.138 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613 112 LLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK--NVKALYRRGQAYKDIGRLEEAVSDLSNAHEV 177 (559)
Q Consensus 112 l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~--~~kal~~rG~A~~~lg~~eeAi~dlekAl~l 177 (559)
....+..++|.|..++|+.++||+.++..++.+|. +...++++-.+++.+++|.++...+.+.-++
T Consensus 257 ~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 257 VLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred hhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 34567788999999999999999999999998875 5679999999999999999999998886433
No 232
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.12 E-value=0.012 Score=61.48 Aligned_cols=127 Identities=17% Similarity=0.182 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----CC
Q 008613 72 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA----KN 147 (559)
Q Consensus 72 ~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP----~~ 147 (559)
..+.-.|+.+...+.|.++++.|++|+++.....+ .-+-..++..++..|-.+++|++|+-+..+|+++-- ++
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D---~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d 199 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDD---AMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKD 199 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCC---ceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCc
Confidence 34555888899999999999999999998665443 223445888999999999999999999999988743 22
Q ss_pred ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCH----HHHHHHHHHHHHHHhhcCC
Q 008613 148 ------VKALYRRGQAYKDIGRLEEAVSDLSNAHEVS--PDDG----TIADVLRDAKEILMKEDGH 201 (559)
Q Consensus 148 ------~kal~~rG~A~~~lg~~eeAi~dlekAl~l~--P~~~----~a~~~L~~a~~~l~~~~~~ 201 (559)
.-.+|+.+.+|..+|+.-.|.++++++-++. -.|. .-...++.++...++.+.+
T Consensus 200 ~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~a 265 (518)
T KOG1941|consen 200 WSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERA 265 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHH
Confidence 2468889999999999999999999997763 2232 2223344555555444443
No 233
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.07 E-value=0.034 Score=56.99 Aligned_cols=104 Identities=13% Similarity=0.067 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008613 69 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV 148 (559)
Q Consensus 69 ~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ 148 (559)
..+......+....+.|+.++|..+|..|+.+.|.+++ ++...|......++.-+|-.+|.+||.++|.|.
T Consensus 114 kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~---------~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ns 184 (472)
T KOG3824|consen 114 KEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQ---------ILIEMGQFREMHNEIVEADQCYVKALTISPGNS 184 (472)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHH---------HHHHHhHHHHhhhhhHhhhhhhheeeeeCCCch
Confidence 33444455666778899999999999999999999987 888899988888899999999999999999999
Q ss_pred HHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCC
Q 008613 149 KALYRRGQAYKDI----GRLEEAVSDLSNAHEVSPDD 181 (559)
Q Consensus 149 kal~~rG~A~~~l----g~~eeAi~dlekAl~l~P~~ 181 (559)
+++.+|+...--. .++-+.+.+.+..+..-+..
T Consensus 185 eALvnR~RT~plV~~iD~r~l~svdskrd~~~~i~~s 221 (472)
T KOG3824|consen 185 EALVNRARTTPLVSAIDRRMLRSVDSKRDEFNHIQHS 221 (472)
T ss_pred HHHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 9999998765332 23344555555555544443
No 234
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.04 E-value=0.011 Score=37.47 Aligned_cols=31 Identities=29% Similarity=0.413 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008613 116 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 146 (559)
Q Consensus 116 ~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~ 146 (559)
+|+++|.||...+++++|+..++++++++|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 5677777777777777777777777777664
No 235
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.04 E-value=0.64 Score=47.14 Aligned_cols=92 Identities=16% Similarity=0.143 Sum_probs=76.3
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 008613 84 EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGR 163 (559)
Q Consensus 84 ~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~ 163 (559)
.+++.+|.-.|.+.-+..+..+ .++...+.|++.+++|++|......+|..+++++.++.++-.+-..+|.
T Consensus 186 gek~qdAfyifeE~s~k~~~T~---------~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTP---------LLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGK 256 (299)
T ss_pred chhhhhHHHHHHHHhcccCCCh---------HHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCC
Confidence 4568889999988777444433 3788899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHHHHhCCCCHHH
Q 008613 164 LEEAVSDL-SNAHEVSPDDGTI 184 (559)
Q Consensus 164 ~eeAi~dl-ekAl~l~P~~~~a 184 (559)
..++...+ ......+|+++-+
T Consensus 257 d~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 257 DAEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred ChHHHHHHHHHHHhcCCcchHH
Confidence 98877666 4445567887654
No 236
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.97 E-value=0.14 Score=59.11 Aligned_cols=145 Identities=15% Similarity=0.078 Sum_probs=108.4
Q ss_pred HHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHH
Q 008613 45 LANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCY 124 (559)
Q Consensus 45 ~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~y 124 (559)
.++.+..+.+.+.......++..++..-+...+|-.+++.|++++|. .+.+++...+.+. ...+--+-.||
T Consensus 17 ~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~-~~Le~~~~~~~~D--------~~tLq~l~~~y 87 (932)
T KOG2053|consen 17 YDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEAL-KLLEALYGLKGTD--------DLTLQFLQNVY 87 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHH-HHHhhhccCCCCc--------hHHHHHHHHHH
Confidence 34555667777777777777777777778888999999999999999 4555565544442 22566778999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHHhhc
Q 008613 125 LKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT-IADVLRDAKEILMKED 199 (559)
Q Consensus 125 lklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~-a~~~L~~a~~~l~~~~ 199 (559)
..++++++|+..|++++..+|. .+-++.+=.+|.+.+.|.+=-+.--+..+..|+++- .|..+..+...+...+
T Consensus 88 ~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~ 162 (932)
T KOG2053|consen 88 RDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSEN 162 (932)
T ss_pred HHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCc
Confidence 9999999999999999999999 889999999999999887754444444556777653 5555555554444333
No 237
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.96 E-value=0.047 Score=48.08 Aligned_cols=96 Identities=11% Similarity=0.092 Sum_probs=75.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHcCC
Q 008613 77 QGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK-----------QYDECIKVGSEVLAYDA 145 (559)
Q Consensus 77 ~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg-----------~y~eAi~~~~~AL~ldP 145 (559)
++..+|.+|+|-+|++...+.+...+.+... ..++.--|.++.++. -+-.+++.|.++..+.|
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~------~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp 75 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESS------WLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSP 75 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCch------HHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccCh
Confidence 5678999999999999999999987776531 123444455554432 23458899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008613 146 KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS 178 (559)
Q Consensus 146 ~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~ 178 (559)
..+..+|.+|.-+-....|++++.-.+++|.+.
T Consensus 76 ~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 76 DSAHSLFELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 999999999999888888999999999988763
No 238
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.95 E-value=0.29 Score=59.21 Aligned_cols=115 Identities=11% Similarity=-0.009 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHH
Q 008613 72 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD-AKNVKA 150 (559)
Q Consensus 72 ~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ld-P~~~ka 150 (559)
..|......|.+.|++++|+..|.+..... ..|+ ...|..+..+|.+.|++++|++.+.+.++.. +.+...
T Consensus 615 ~tynsLI~ay~k~G~~deAl~lf~eM~~~G-v~PD-------~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~t 686 (1060)
T PLN03218 615 EVYTIAVNSCSQKGDWDFALSIYDDMKKKG-VKPD-------EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686 (1060)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCC-------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 455566667777888888888877766531 1121 2366677777778888888888888777654 335677
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHH
Q 008613 151 LYRRGQAYKDIGRLEEAVSDLSNAHEV--SPDDGTIADVLRDAKEIL 195 (559)
Q Consensus 151 l~~rG~A~~~lg~~eeAi~dlekAl~l--~P~~~~a~~~L~~a~~~l 195 (559)
|..+..+|...|++++|+..|++.... .|+ ...+..|-....+.
T Consensus 687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd-vvtyN~LI~gy~k~ 732 (1060)
T PLN03218 687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPT-VSTMNALITALCEG 732 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHC
Confidence 777888888888888888888776543 343 44555555444443
No 239
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.93 E-value=0.012 Score=40.90 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=15.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008613 117 SLNSMSCYLKTKQYDECIKVGSEVLA 142 (559)
Q Consensus 117 ~~nlA~~ylklg~y~eAi~~~~~AL~ 142 (559)
|.++|.+|.++|+|++|+..|+++|.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55666666666666666666666443
No 240
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=0.02 Score=56.96 Aligned_cols=85 Identities=12% Similarity=0.022 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008613 113 LLACSLNSMSCYLKTKQYDECIKVGSEVLAY--------DAKN----------VKALYRRGQAYKDIGRLEEAVSDLSNA 174 (559)
Q Consensus 113 ~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l--------dP~~----------~kal~~rG~A~~~lg~~eeAi~dlekA 174 (559)
...++...|.-++++|+|.+|+..|..||.. .|.. ...|.+..+|++..++|-++++.+...
T Consensus 177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei 256 (329)
T KOG0545|consen 177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI 256 (329)
T ss_pred hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 4457888999999999999999999998742 3433 347899999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHHHh
Q 008613 175 HEVSPDDGTIADVLRDAKEILMK 197 (559)
Q Consensus 175 l~l~P~~~~a~~~L~~a~~~l~~ 197 (559)
|..+|++..++...+.++...=.
T Consensus 257 L~~~~~nvKA~frRakAhaa~Wn 279 (329)
T KOG0545|consen 257 LRHHPGNVKAYFRRAKAHAAVWN 279 (329)
T ss_pred HhcCCchHHHHHHHHHHHHhhcC
Confidence 99999999988887777655433
No 241
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.89 E-value=0.059 Score=51.82 Aligned_cols=121 Identities=13% Similarity=0.013 Sum_probs=90.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCHHHHHHHHHH
Q 008613 79 NELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLA-YDAKNVKALYRRGQA 157 (559)
Q Consensus 79 n~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~-ldP~~~kal~~rG~A 157 (559)
...-..=+.+.++..-.+.+...|... -.+.++....++|+|.+|...|.+++. +.-+++..++.++++
T Consensus 64 ~a~~q~ldP~R~~Rea~~~~~~ApTvq----------nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~A 133 (251)
T COG4700 64 MALQQKLDPERHLREATEELAIAPTVQ----------NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQA 133 (251)
T ss_pred HHHHHhcChhHHHHHHHHHHhhchhHH----------HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHH
Confidence 334444456666666667777666553 477899999999999999999999985 567889999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613 158 YKDIGRLEEAVSDLSNAHEVSPDD--GTIADVLRDAKEILMKEDGHHGPRGLLI 209 (559)
Q Consensus 158 ~~~lg~~eeAi~dlekAl~l~P~~--~~a~~~L~~a~~~l~~~~~~~~~~~~~i 209 (559)
...++++.+|...+++..+.+|.. +...-.++.+.-..+++..+...++..+
T Consensus 134 qfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~ 187 (251)
T COG4700 134 QFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAI 187 (251)
T ss_pred HHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHH
Confidence 999999999999999999998863 4455566666666655544433444333
No 242
>PLN03077 Protein ECB2; Provisional
Probab=95.88 E-value=0.21 Score=59.21 Aligned_cols=113 Identities=9% Similarity=-0.044 Sum_probs=80.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008613 76 KQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRG 155 (559)
Q Consensus 76 ~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG 155 (559)
..-..+.+.|++++|..+|....+...-.|+ ...|..+..+|.+.|++++|.+.+++. .+.|+ +..|..+-
T Consensus 594 ~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~-------~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl 664 (857)
T PLN03077 594 SLLCACSRSGMVTQGLEYFHSMEEKYSITPN-------LKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALL 664 (857)
T ss_pred HHHHHHhhcChHHHHHHHHHHHHHHhCCCCc-------hHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHH
Confidence 3335577778888888888877754444443 236777888888888888888888765 34554 55566666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 008613 156 QAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 197 (559)
Q Consensus 156 ~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~ 197 (559)
.++..-++.+.+....+++++++|++...+..|..++...++
T Consensus 665 ~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~ 706 (857)
T PLN03077 665 NACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGK 706 (857)
T ss_pred HHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCC
Confidence 677778888888888888888888888777777766655444
No 243
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=95.85 E-value=0.19 Score=58.17 Aligned_cols=116 Identities=9% Similarity=-0.073 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008613 73 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALY 152 (559)
Q Consensus 73 ~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~ 152 (559)
.+...-..+.+.|++++|.++|....+.....|+ ...|..+..+|.+.|++++|++.+++.- ..| +...|.
T Consensus 428 T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~-------~~~y~~li~~l~r~G~~~eA~~~~~~~~-~~p-~~~~~~ 498 (697)
T PLN03081 428 TFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR-------AMHYACMIELLGREGLLDEAYAMIRRAP-FKP-TVNMWA 498 (697)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC-------ccchHhHHHHHHhcCCHHHHHHHHHHCC-CCC-CHHHHH
Confidence 3444555666677777777777666553333332 1256667777778888888887776542 233 455677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 008613 153 RRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 197 (559)
Q Consensus 153 ~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~ 197 (559)
.+..++...|+++.|...+++.+.++|++...+..|..+....++
T Consensus 499 ~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~ 543 (697)
T PLN03081 499 ALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGR 543 (697)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCC
Confidence 777788888888888888888888888776666666555544443
No 244
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.84 E-value=0.071 Score=48.66 Aligned_cols=64 Identities=14% Similarity=0.037 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008613 70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLA 142 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ 142 (559)
....+...+..+...|+|++|+..+.+++.++|.+.. +|..+-.||...|++.+|++.|.+..+
T Consensus 61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~---------~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 61 YLDALERLAEALLEAGDYEEALRLLQRALALDPYDEE---------AYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HH---------HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHH---------HHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3667778888999999999999999999999998855 899999999999999999999988754
No 245
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.83 E-value=0.073 Score=61.23 Aligned_cols=92 Identities=21% Similarity=0.259 Sum_probs=79.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008613 80 ELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYK 159 (559)
Q Consensus 80 ~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~ 159 (559)
-....++|..|+....+.++..|+.+- +..-.|..+.++|++++|....+..-.+.+++...+-.+-.+|.
T Consensus 18 d~ld~~qfkkal~~~~kllkk~Pn~~~---------a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~ 88 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKHPNALY---------AKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYR 88 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHCCCcHH---------HHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHH
Confidence 356678899999999999998777542 45566888999999999996666666677888899999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCC
Q 008613 160 DIGRLEEAVSDLSNAHEVSPD 180 (559)
Q Consensus 160 ~lg~~eeAi~dlekAl~l~P~ 180 (559)
.++++++|+..|++++..+|.
T Consensus 89 d~~~~d~~~~~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 89 DLGKLDEAVHLYERANQKYPS 109 (932)
T ss_pred HHhhhhHHHHHHHHHHhhCCc
Confidence 999999999999999999998
No 246
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.82 E-value=0.013 Score=37.12 Aligned_cols=33 Identities=36% Similarity=0.665 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008613 149 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181 (559)
Q Consensus 149 kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~ 181 (559)
.+|+++|.+|..++++++|+.+|+++++++|++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 578999999999999999999999999998863
No 247
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.78 E-value=0.12 Score=56.23 Aligned_cols=104 Identities=15% Similarity=0.162 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCHHHH
Q 008613 73 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY-DAKNVKAL 151 (559)
Q Consensus 73 ~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l-dP~~~kal 151 (559)
..+.++.|+.+.|+.++||+.|+..++.+|.... ..+++|+-.|++.+++|.++.....+-=++ -|+.+...
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~-------l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~ 333 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDN-------LNIRENLIEALLELQAYADVQALLAKYDDISLPKSATIC 333 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccch-------hhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHH
Confidence 3456899999999999999999999998776422 348999999999999999998887774333 36677777
Q ss_pred HHHHHHHHH-cCC---------------HHHHHHHHHHHHHhCCCCHH
Q 008613 152 YRRGQAYKD-IGR---------------LEEAVSDLSNAHEVSPDDGT 183 (559)
Q Consensus 152 ~~rG~A~~~-lg~---------------~eeAi~dlekAl~l~P~~~~ 183 (559)
|..+....+ .++ -..|++.+++|++.+|.-+.
T Consensus 334 YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 334 YTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred HHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 777665432 222 13478899999999988654
No 248
>PRK10941 hypothetical protein; Provisional
Probab=95.64 E-value=0.096 Score=53.57 Aligned_cols=79 Identities=13% Similarity=-0.079 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 150 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka 150 (559)
...+.++=..|.+.++|..|+.+....+.+.|+++. -+.-||.+|.+++.+..|+.+++.-|+..|+.+.+
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~---------e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPY---------EIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 445666777899999999999999999999999975 67889999999999999999999999999999887
Q ss_pred HHHHHHHH
Q 008613 151 LYRRGQAY 158 (559)
Q Consensus 151 l~~rG~A~ 158 (559)
..-+-++.
T Consensus 252 ~~ik~ql~ 259 (269)
T PRK10941 252 EMIRAQIH 259 (269)
T ss_pred HHHHHHHH
Confidence 66555443
No 249
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.59 E-value=0.25 Score=59.76 Aligned_cols=62 Identities=13% Similarity=0.056 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613 116 CSLNSMSCYLKTKQYDECIKVGSEVLAYD-AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV 177 (559)
Q Consensus 116 ~~~nlA~~ylklg~y~eAi~~~~~AL~ld-P~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l 177 (559)
.|..+-.+|.+.|++++|++.|.+..+.+ +.+...|..+..+|...|++++|+..|++....
T Consensus 581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~ 643 (1060)
T PLN03218 581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK 643 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 44445555555555565655555555544 234455555555555666666666665555543
No 250
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.58 E-value=0.9 Score=46.54 Aligned_cols=113 Identities=16% Similarity=0.059 Sum_probs=87.0
Q ss_pred hHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCC----C-CCchhhhhHHHHHHHHHHHHHHcCCHHHHHH---HH
Q 008613 67 EFNAAKMLKKQGNELYSEG-RFSNALQKYLLAKKNLQG----I-HSSEGRTLLLACSLNSMSCYLKTKQYDECIK---VG 137 (559)
Q Consensus 67 ~~~~a~~lk~~Gn~~~k~g-~y~eAi~~Y~kAL~l~p~----~-~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~---~~ 137 (559)
...-+..+++.|..+++.+ +|++|+..+++++++... . ...+..+++..++..++.+|+..+.++...+ ..
T Consensus 31 ~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l 110 (278)
T PF08631_consen 31 AEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNAL 110 (278)
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 4445889999999999999 999999999999999633 1 1235678999999999999999987754333 33
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008613 138 SEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP 179 (559)
Q Consensus 138 ~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P 179 (559)
+.+-.-.|+.+..++..=.++...++.+++.+.+.+.+.--+
T Consensus 111 ~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 111 RLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 333344577777776666666668999999999999988644
No 251
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.57 E-value=0.3 Score=52.95 Aligned_cols=116 Identities=14% Similarity=0.023 Sum_probs=100.1
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 008613 58 ARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVG 137 (559)
Q Consensus 58 ~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~ 137 (559)
.++..++..+.-....|...|.--..++++..|-..|.+||..+-.+.. +|...+.|-++.+....|-+.+
T Consensus 60 kefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~it---------LWlkYae~Emknk~vNhARNv~ 130 (677)
T KOG1915|consen 60 KEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNIT---------LWLKYAEFEMKNKQVNHARNVW 130 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccch---------HHHHHHHHHHhhhhHhHHHHHH
Confidence 4444455555556777888888888999999999999999998766644 9999999999999999999999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008613 138 SEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG 182 (559)
Q Consensus 138 ~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~ 182 (559)
++|+.+-|.--+.||..-..--.+|+..-|...|++=+...|+..
T Consensus 131 dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eq 175 (677)
T KOG1915|consen 131 DRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQ 175 (677)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHH
Confidence 999999999999999988888899999999999999999999753
No 252
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=95.54 E-value=0.065 Score=63.42 Aligned_cols=117 Identities=12% Similarity=0.100 Sum_probs=90.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHc----C---CHHHHHHHHHHHHHcCCC
Q 008613 74 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT----K---QYDECIKVGSEVLAYDAK 146 (559)
Q Consensus 74 lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylkl----g---~y~eAi~~~~~AL~ldP~ 146 (559)
+....++++..+.|+.|+..|++.-.-.|...+ --.+.++.|...+.. + .|.+|+..|++.. -.|.
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 550 (932)
T PRK13184 478 CLAVPDAFLAEKLYDQALIFYRRIRESFPGRKE------GYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVG 550 (932)
T ss_pred cccCcHHHHhhHHHHHHHHHHHHHhhcCCCccc------chHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCC
Confidence 334567788899999999999999998887653 123666777776653 2 4677777776654 4577
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 008613 147 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 197 (559)
Q Consensus 147 ~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~ 197 (559)
-+--|...+.+|..+++|+|-+++|.-|++..|.++.+-.....+..++.+
T Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (932)
T PRK13184 551 APLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHE 601 (932)
T ss_pred CchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Confidence 788899999999999999999999999999999999877766666666544
No 253
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=95.44 E-value=0.23 Score=45.28 Aligned_cols=90 Identities=12% Similarity=0.011 Sum_probs=64.5
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHH
Q 008613 58 ARIDAQMNYEFNAAKMLKKQGNELYSEGRF---SNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 134 (559)
Q Consensus 58 ~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y---~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi 134 (559)
++...+........+..++.+.++.+..+- .+.|..+...+. ..++. -.-.|.|.++..|+++++|+.++
T Consensus 19 e~~~rq~a~~~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~--~~~~~-----~rRe~lyYLAvg~yRlkeY~~s~ 91 (149)
T KOG3364|consen 19 EEILRQAARSDVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK--SAHPE-----RRRECLYYLAVGHYRLKEYSKSL 91 (149)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh--hcCcc-----cchhhhhhhHHHHHHHhhHHHHH
Confidence 344444444344466777888888876654 457788888776 12221 12348889999999999999999
Q ss_pred HHHHHHHHcCCCCHHHHHHH
Q 008613 135 KVGSEVLAYDAKNVKALYRR 154 (559)
Q Consensus 135 ~~~~~AL~ldP~~~kal~~r 154 (559)
++++..|+.+|+|..+.-..
T Consensus 92 ~yvd~ll~~e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 92 RYVDALLETEPNNRQALELK 111 (149)
T ss_pred HHHHHHHhhCCCcHHHHHHH
Confidence 99999999999998775443
No 254
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.40 E-value=0.021 Score=56.34 Aligned_cols=60 Identities=13% Similarity=0.278 Sum_probs=55.9
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008613 124 YLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT 183 (559)
Q Consensus 124 ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~ 183 (559)
..+-++++.+.+.|.+++++-|++...|+|+|......|+++.|++.|++.++++|.+-.
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 446789999999999999999999999999999999999999999999999999998743
No 255
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=95.38 E-value=0.41 Score=57.69 Aligned_cols=105 Identities=13% Similarity=0.038 Sum_probs=62.0
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH
Q 008613 85 GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRL 164 (559)
Q Consensus 85 g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~ 164 (559)
|.-+...+.|.+|.+++... .+|..|.-+|.+..++++|.+.++.-++..-...+.|...+..++...+-
T Consensus 1511 G~eesl~kVFeRAcqycd~~----------~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~ 1580 (1710)
T KOG1070|consen 1511 GTEESLKKVFERACQYCDAY----------TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEA 1580 (1710)
T ss_pred CcHHHHHHHHHHHHHhcchH----------HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHH
Confidence 34444555566666653332 25566666666666666666666666666555566666666666666666
Q ss_pred HHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHhhc
Q 008613 165 EEAVSDLSNAHEVSPD--DGTIADVLRDAKEILMKED 199 (559)
Q Consensus 165 eeAi~dlekAl~l~P~--~~~a~~~L~~a~~~l~~~~ 199 (559)
++|...+.+|++--|. |.++......+..+.++.+
T Consensus 1581 ~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDae 1617 (1710)
T KOG1070|consen 1581 EAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAE 1617 (1710)
T ss_pred HHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCch
Confidence 6666666666666665 4455555555555554443
No 256
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.32 E-value=0.2 Score=52.18 Aligned_cols=111 Identities=18% Similarity=0.115 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hcCCC------------------------CCchhhhhHHHHHHHHHHHH
Q 008613 70 AAKMLKKQGNELYSEGRFSNALQKYLLAKK-NLQGI------------------------HSSEGRTLLLACSLNSMSCY 124 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~-l~p~~------------------------~~~e~~~l~~~~~~nlA~~y 124 (559)
.+......+..++..|+..+|+......+. ..... .........+.+++.+|...
T Consensus 183 ~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~ 262 (352)
T PF02259_consen 183 LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWL 262 (352)
T ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHH
Confidence 456677778888888999999988888877 22211 02234566778888888888
Q ss_pred HHc------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH-----------------HHHHHHHHHHHHhCCC
Q 008613 125 LKT------KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRL-----------------EEAVSDLSNAHEVSPD 180 (559)
Q Consensus 125 lkl------g~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~-----------------eeAi~dlekAl~l~P~ 180 (559)
... +.+++++..|.++++++|.+.++|+..|..+..+-+. ..|+..|-+++.+.+.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 263 DELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 888 8899999999999999999999999998888766332 2377777777777666
No 257
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.29 E-value=0.032 Score=38.74 Aligned_cols=29 Identities=28% Similarity=0.440 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008613 150 ALYRRGQAYKDIGRLEEAVSDLSNAHEVS 178 (559)
Q Consensus 150 al~~rG~A~~~lg~~eeAi~dlekAl~l~ 178 (559)
+|.++|.+|..+|+|++|+..|+++|.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 58899999999999999999999976553
No 258
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.15 E-value=0.064 Score=55.06 Aligned_cols=75 Identities=17% Similarity=0.118 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008613 115 ACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLR 189 (559)
Q Consensus 115 ~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~ 189 (559)
.+-.+.|.-..+.|+.++|...|..|+.++|+++.++.+.|.....-.+.-+|-.+|-+||.++|.+.++.-+..
T Consensus 117 ~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 117 ILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 344566677778999999999999999999999999999999999999999999999999999999987665433
No 259
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=95.09 E-value=0.44 Score=57.50 Aligned_cols=118 Identities=12% Similarity=-0.006 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CH
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK--NV 148 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~--~~ 148 (559)
-..+..+...|-+.++|++|.++|+.-++...... ..|...+..+++..+-++|.....+||+--|. +.
T Consensus 1530 ~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~---------~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv 1600 (1710)
T KOG1070|consen 1530 YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTR---------KVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHV 1600 (1710)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchh---------hHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhH
Confidence 44566778899999999999999999999877443 48999999999999999999999999999998 78
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 008613 149 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 197 (559)
Q Consensus 149 kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~ 197 (559)
+.+..-++.-+..|+.+.+...|+..+.-+|.-.+.|..+-+...+.+.
T Consensus 1601 ~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~ 1649 (1710)
T KOG1070|consen 1601 EFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGD 1649 (1710)
T ss_pred HHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCC
Confidence 8999999999999999999999999999999998999888776555433
No 260
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.95 E-value=2.8 Score=44.80 Aligned_cols=114 Identities=13% Similarity=0.003 Sum_probs=83.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008613 74 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYR 153 (559)
Q Consensus 74 lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~ 153 (559)
+...=...+..|+|+.||++.+......--.+ ......+..++...+...+. -+...|..+..+++++.|+.+-+-..
T Consensus 191 ~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~-~~aeR~rAvLLtAkA~s~ld-adp~~Ar~~A~~a~KL~pdlvPaav~ 268 (531)
T COG3898 191 ARATLEARCAAGDWDGALKLVDAQRAAKVIEK-DVAERSRAVLLTAKAMSLLD-ADPASARDDALEANKLAPDLVPAAVV 268 (531)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHhhch-hhHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHhhcCCccchHHHH
Confidence 33344567889999999999876654322221 12234445555555555444 35889999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008613 154 RGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD 190 (559)
Q Consensus 154 rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~ 190 (559)
-+.+|+.-|+..++-..++.+-+.+|+ +.|+..+..
T Consensus 269 AAralf~d~~~rKg~~ilE~aWK~ePH-P~ia~lY~~ 304 (531)
T COG3898 269 AARALFRDGNLRKGSKILETAWKAEPH-PDIALLYVR 304 (531)
T ss_pred HHHHHHhccchhhhhhHHHHHHhcCCC-hHHHHHHHH
Confidence 999999999999999999999999885 445444433
No 261
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.94 E-value=0.13 Score=43.91 Aligned_cols=64 Identities=17% Similarity=0.158 Sum_probs=46.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008613 80 ELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY 143 (559)
Q Consensus 80 ~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l 143 (559)
..++.++|.+|++.+.+.++................++.++|.++...|++++|+..+++++++
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4567899999999999999876554332111234456777888888888888888888888766
No 262
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=94.84 E-value=0.39 Score=49.33 Aligned_cols=107 Identities=13% Similarity=0.052 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH-
Q 008613 71 AKMLKKQGNELYS-EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV- 148 (559)
Q Consensus 71 a~~lk~~Gn~~~k-~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~- 148 (559)
...|...|...+. .++...|...|+.+++..+.+.. +|..-...+.++++.+.|...|++++..-|...
T Consensus 35 ~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~---------~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~ 105 (280)
T PF05843_consen 35 YHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPD---------FWLEYLDFLIKLNDINNARALFERAISSLPKEKQ 105 (280)
T ss_dssp THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HH---------HHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhH
Confidence 4556677777666 67777799999999999888865 666777888899999999999999998876654
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008613 149 --KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIAD 186 (559)
Q Consensus 149 --kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~ 186 (559)
..|.....--...|+++...+.++++.++.|++..+..
T Consensus 106 ~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~ 145 (280)
T PF05843_consen 106 SKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLEL 145 (280)
T ss_dssp CHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHH
Confidence 45555555557889999999999999999998665544
No 263
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.76 E-value=0.038 Score=54.61 Aligned_cols=60 Identities=18% Similarity=0.094 Sum_probs=55.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008613 80 ELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV 148 (559)
Q Consensus 80 ~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ 148 (559)
.+.+.++++.|.++|.+++.+.|.... -|++++....+.|+++.|.+.|+++++++|++-
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~---------gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAA---------GWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhh---------hhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 467789999999999999999888765 899999999999999999999999999999873
No 264
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.73 E-value=0.46 Score=51.54 Aligned_cols=100 Identities=15% Similarity=0.098 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008613 68 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN 147 (559)
Q Consensus 68 ~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~ 147 (559)
..-++.|.-.+....++.+...|-..+-.||..+|.+. ++...-.+-+++++++.|-..|++-|+..|.+
T Consensus 401 FtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~K----------lFk~YIelElqL~efDRcRkLYEkfle~~Pe~ 470 (677)
T KOG1915|consen 401 FTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDK----------LFKGYIELELQLREFDRCRKLYEKFLEFSPEN 470 (677)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchh----------HHHHHHHHHHHHhhHHHHHHHHHHHHhcChHh
Confidence 33577888888899999999999999999999988863 44444456678899999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613 148 VKALYRRGQAYKDIGRLEEAVSDLSNAHEV 177 (559)
Q Consensus 148 ~kal~~rG~A~~~lg~~eeAi~dlekAl~l 177 (559)
..+|...|..-..||+.+.|...|+-|+..
T Consensus 471 c~~W~kyaElE~~LgdtdRaRaifelAi~q 500 (677)
T KOG1915|consen 471 CYAWSKYAELETSLGDTDRARAIFELAISQ 500 (677)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence 999999999999999999999999988764
No 265
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.65 E-value=1 Score=45.30 Aligned_cols=107 Identities=11% Similarity=0.057 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----C
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD-----A 145 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ld-----P 145 (559)
+..+...+++|-..++|++|..++.+|++.-..+.. .--.+..|-..+....++..|.+++.+|++|..+. |
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrs---lfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gsp 107 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRS---LFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSP 107 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCc
Confidence 445555666777788999999999999865444322 01123466667777788899999999999998763 4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008613 146 KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 180 (559)
Q Consensus 146 ~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~ 180 (559)
+-+..-..++.-.....+.++|+..|++++.+.-.
T Consensus 108 dtAAmaleKAak~lenv~Pd~AlqlYqralavve~ 142 (308)
T KOG1585|consen 108 DTAAMALEKAAKALENVKPDDALQLYQRALAVVEE 142 (308)
T ss_pred chHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc
Confidence 44444455555556667889999999999887543
No 266
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.55 E-value=0.19 Score=42.72 Aligned_cols=65 Identities=25% Similarity=0.202 Sum_probs=52.7
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHh
Q 008613 133 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD--GTIADVLRDAKEILMK 197 (559)
Q Consensus 133 Ai~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~--~~a~~~L~~a~~~l~~ 197 (559)
.+..+++.+..+|++..+.|.++.++...|+|++|++.+-.++..++++ ..+...+-.+-..++.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 4677889999999999999999999999999999999999999998865 5677777777666654
No 267
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.49 E-value=2.3 Score=40.10 Aligned_cols=114 Identities=10% Similarity=-0.085 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008613 70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK 149 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~k 149 (559)
....+.+...+....++.+++...+...-.+.|..+. +-.--+..|...|+|.+|+..++.+.+-.|..+-
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e---------~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~ 79 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPE---------LDLFDGWLHIVRGDWDDALRLLRELEERAPGFPY 79 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchH---------HHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChH
Confidence 3667788888899999999999999888888888876 6677889999999999999999999999999998
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008613 150 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI 194 (559)
Q Consensus 150 al~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~ 194 (559)
+--.++.|+..+++.+-=.. -..+++..+ ++.+...++.+..+
T Consensus 80 ~kALlA~CL~~~~D~~Wr~~-A~evle~~~-d~~a~~Lv~~Ll~~ 122 (160)
T PF09613_consen 80 AKALLALCLYALGDPSWRRY-ADEVLESGA-DPDARALVRALLAR 122 (160)
T ss_pred HHHHHHHHHHHcCChHHHHH-HHHHHhcCC-ChHHHHHHHHHHHh
Confidence 88888999999999765433 333454443 55565555555443
No 268
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.43 E-value=0.96 Score=45.42 Aligned_cols=107 Identities=12% Similarity=0.063 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HcC
Q 008613 69 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVL----AYD 144 (559)
Q Consensus 69 ~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL----~ld 144 (559)
..+..-..++......-+.++|+.+|++++.+...+.. .......+...+.+|.++.+|.+|-..+.+-. +.+
T Consensus 108 dtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr---~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~ 184 (308)
T KOG1585|consen 108 DTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDR---DQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCD 184 (308)
T ss_pred chHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccch---HHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHh
Confidence 34556667777888899999999999999998776543 23334567788999999999999876665443 333
Q ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008613 145 --AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS 178 (559)
Q Consensus 145 --P~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~ 178 (559)
+..-+++.-.-.+|+...+|..|..+|+....+.
T Consensus 185 ~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip 220 (308)
T KOG1585|consen 185 AYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP 220 (308)
T ss_pred hcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence 3334455555566666779999999999887763
No 269
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.39 E-value=0.24 Score=42.10 Aligned_cols=73 Identities=15% Similarity=0.084 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHcCCHHHH
Q 008613 90 ALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN--VKALYRRGQAYKDIGRLEEA 167 (559)
Q Consensus 90 Ai~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~--~kal~~rG~A~~~lg~~eeA 167 (559)
.+..+.+++..+|.+.. +.+.+|.++...|+|++|++.+-.+++.++++ ..+.-.+=.++..+|.-+.-
T Consensus 7 ~~~al~~~~a~~P~D~~---------ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~pl 77 (90)
T PF14561_consen 7 DIAALEAALAANPDDLD---------ARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPL 77 (90)
T ss_dssp HHHHHHHHHHHSTT-HH---------HHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HH
T ss_pred cHHHHHHHHHcCCCCHH---------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChH
Confidence 46778899999999865 89999999999999999999999999999877 33333333444444443333
Q ss_pred HHHH
Q 008613 168 VSDL 171 (559)
Q Consensus 168 i~dl 171 (559)
+..|
T Consensus 78 v~~~ 81 (90)
T PF14561_consen 78 VSEY 81 (90)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 270
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=94.24 E-value=0.35 Score=52.78 Aligned_cols=93 Identities=18% Similarity=0.135 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC-HHH
Q 008613 88 SNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGR-LEE 166 (559)
Q Consensus 88 ~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~-~ee 166 (559)
..-+..|++|+...+.+.. +|.+-.....+-+.|.+--..|.++|.+.|+++..|..-+.-.+..+. .+.
T Consensus 88 ~rIv~lyr~at~rf~~D~~---------lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~s 158 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVK---------LWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIES 158 (568)
T ss_pred HHHHHHHHHHHHhcCCCHH---------HHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHH
Confidence 3446779999999888765 888887776777779999999999999999999999999888887776 899
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHH
Q 008613 167 AVSDLSNAHEVSPDDGTIADVLR 189 (559)
Q Consensus 167 Ai~dlekAl~l~P~~~~a~~~L~ 189 (559)
|...+.++|..+|+.+.+|...=
T Consensus 159 aRalflrgLR~npdsp~Lw~eyf 181 (568)
T KOG2396|consen 159 ARALFLRGLRFNPDSPKLWKEYF 181 (568)
T ss_pred HHHHHHHHhhcCCCChHHHHHHH
Confidence 99999999999999998887543
No 271
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.22 E-value=0.057 Score=58.40 Aligned_cols=90 Identities=12% Similarity=0.091 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hc----CCCCCc----hhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKK-NL----QGIHSS----EGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVL 141 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~-l~----p~~~~~----e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL 141 (559)
.-.+.+.|-++|+.+.|.-++.+|.+||+ .+ ...... -...-...++||.|..|+..|++-.|.++|.+++
T Consensus 283 cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av 362 (696)
T KOG2471|consen 283 CIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAV 362 (696)
T ss_pred heeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHH
Confidence 33457788889999999999999999996 21 110000 0122345589999999999999999999999999
Q ss_pred HcCCCCHHHHHHHHHHHHH
Q 008613 142 AYDAKNVKALYRRGQAYKD 160 (559)
Q Consensus 142 ~ldP~~~kal~~rG~A~~~ 160 (559)
.....+|..|+|++.|...
T Consensus 363 ~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 363 HVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHHhcCcHHHHHHHHHHHH
Confidence 9999999999999998754
No 272
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=94.21 E-value=0.65 Score=47.27 Aligned_cols=79 Identities=14% Similarity=-0.028 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 150 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka 150 (559)
...+.+.=..+...++++.|..+-.+.+.++|.+|. -+.-+|.+|.++|.+.-|+++++..++..|+.+.+
T Consensus 181 ~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~---------eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a 251 (269)
T COG2912 181 SRLLRNLKAALLRELQWELALRVAERLLDLNPEDPY---------EIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIA 251 (269)
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChh---------hccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHH
Confidence 334444556788889999999999999999999975 56789999999999999999999999999999887
Q ss_pred HHHHHHHH
Q 008613 151 LYRRGQAY 158 (559)
Q Consensus 151 l~~rG~A~ 158 (559)
-.-+....
T Consensus 252 ~~ir~~l~ 259 (269)
T COG2912 252 EMIRAQLL 259 (269)
T ss_pred HHHHHHHH
Confidence 76665543
No 273
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=94.19 E-value=1.3 Score=39.82 Aligned_cols=109 Identities=18% Similarity=0.085 Sum_probs=72.1
Q ss_pred HHHHHhhCCChHHHHHHHHHHHcc----CcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613 25 CAAEQLTHTPPEEVAEIGEKLANA----SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKN 100 (559)
Q Consensus 25 ~a~e~l~~~~pee~~~~~~~~~~~----~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l 100 (559)
....++.....++.++-+.++... .+++ .+++.--.+-.+-.+...+.+.|+|++++..-.++|.+
T Consensus 15 ~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eE----------aFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y 84 (144)
T PF12968_consen 15 DAERQLQDGAYEEAAASCRKAMEVSRTIPAEE----------AFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRY 84 (144)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS-------------HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhccCChHh----------hcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 445566667777766666543332 2333 11122223444556778899999999999999999988
Q ss_pred cCCCC--CchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008613 101 LQGIH--SSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY 143 (559)
Q Consensus 101 ~p~~~--~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l 143 (559)
+.... ....-.+++.+.++++.++..+|+.++|+..|+.+.+.
T Consensus 85 FNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 85 FNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 76432 22345678889999999999999999999999988753
No 274
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.11 E-value=1.2 Score=46.48 Aligned_cols=95 Identities=11% Similarity=-0.094 Sum_probs=67.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCC---HHHHHHH
Q 008613 79 NELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY-DAKN---VKALYRR 154 (559)
Q Consensus 79 n~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l-dP~~---~kal~~r 154 (559)
-.+...|-|++|.+.-++++++++.+.- +...++.++.-.+++.+++++-.+--.. +..+ ..-|..-
T Consensus 183 FgL~E~g~y~dAEk~A~ralqiN~~D~W---------a~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~ 253 (491)
T KOG2610|consen 183 FGLEECGIYDDAEKQADRALQINRFDCW---------ASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHT 253 (491)
T ss_pred hhHHHhccchhHHHHHHhhccCCCcchH---------HHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHH
Confidence 3456789999999999999999998832 5555667777789999999987655322 1111 2456667
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH--hCCCCH
Q 008613 155 GQAYKDIGRLEEAVSDLSNAHE--VSPDDG 182 (559)
Q Consensus 155 G~A~~~lg~~eeAi~dlekAl~--l~P~~~ 182 (559)
+..|..-+.|+.|+..|.+-+- +..+|.
T Consensus 254 Al~~iE~aeye~aleIyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 254 ALFHIEGAEYEKALEIYDREIWKRLEKDDA 283 (491)
T ss_pred HHhhhcccchhHHHHHHHHHHHHHhhccch
Confidence 8888888999999998876543 334444
No 275
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.08 E-value=1.4 Score=45.72 Aligned_cols=124 Identities=16% Similarity=0.081 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--C-C
Q 008613 69 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY--D-A 145 (559)
Q Consensus 69 ~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l--d-P 145 (559)
..+..+...+..+.+.|+|..|...+.++..+.+.... ....+.+..+..+...|+..+|+......++. . .
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~-----~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~ 218 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSES-----LLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKN 218 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccC-----CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc
Confidence 45677889999999999999999999998886532211 01236777888889999999999988888771 1 0
Q ss_pred -------------------------------CCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008613 146 -------------------------------KNVKALYRRGQAYKDI------GRLEEAVSDLSNAHEVSPDDGTIADVL 188 (559)
Q Consensus 146 -------------------------------~~~kal~~rG~A~~~l------g~~eeAi~dlekAl~l~P~~~~a~~~L 188 (559)
..+++++.+|.-...+ +.+++++..|+.++.++|....++..+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~ 298 (352)
T PF02259_consen 219 IDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSW 298 (352)
T ss_pred cccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHH
Confidence 1146788888888888 889999999999999999999999988
Q ss_pred HHHHHHHHh
Q 008613 189 RDAKEILMK 197 (559)
Q Consensus 189 ~~a~~~l~~ 197 (559)
+.....+-.
T Consensus 299 a~~~~~~~~ 307 (352)
T PF02259_consen 299 ALFNDKLLE 307 (352)
T ss_pred HHHHHHHHH
Confidence 888777643
No 276
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=94.06 E-value=0.33 Score=40.12 Aligned_cols=67 Identities=19% Similarity=0.214 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY 143 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l 143 (559)
+....+.|..+|...+..+|+..++++|+..+..++ +-.++-.+..+|...|+|++.+.+...=+++
T Consensus 6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~------rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITDRED------RFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778999999999999999999999998776543 4456777889999999999999987765544
No 277
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.94 E-value=0.33 Score=49.12 Aligned_cols=116 Identities=11% Similarity=0.005 Sum_probs=91.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCC--CC
Q 008613 74 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLA----YDA--KN 147 (559)
Q Consensus 74 lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~----ldP--~~ 147 (559)
.+...++++..|.|.-.++.|.+.++.+|... ..+...++.+-++.|+.+.|..+++.+-+ ++- .+
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~--------p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~ 251 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQE--------PQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGK 251 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCccc--------HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchh
Confidence 34477889999999999999999999874432 34788999999999999999999995543 332 34
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 008613 148 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 197 (559)
Q Consensus 148 ~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~ 197 (559)
.-++.+.+.+|...++|.+|+..|.+++..||.++.+...-..+.--+++
T Consensus 252 ~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~ 301 (366)
T KOG2796|consen 252 IMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGK 301 (366)
T ss_pred HHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHH
Confidence 56778888889999999999999999999999987665554444444433
No 278
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.93 E-value=0.12 Score=36.16 Aligned_cols=29 Identities=21% Similarity=0.320 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008613 115 ACSLNSMSCYLKTKQYDECIKVGSEVLAY 143 (559)
Q Consensus 115 ~~~~nlA~~ylklg~y~eAi~~~~~AL~l 143 (559)
.++.|+|.+|...|+|++|+..+.+++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46778888888888888888888888765
No 279
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.69 E-value=0.75 Score=49.15 Aligned_cols=107 Identities=10% Similarity=0.117 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHHcCC
Q 008613 70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK---TKQYDECIKVGSE-VLAYDA 145 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylk---lg~y~eAi~~~~~-AL~ldP 145 (559)
.++...+.=-.|-.-.+|+.=|.+.+.. ...|.+.-. . ...+.+..|.++.+ .|+.++|+..+.. +....+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l-~~~p~~~~~--~--~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~ 214 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETL-EALPTCDVA--N--QHNIKFQYAFALNRRNKPGDREKALQILLPVLESDEN 214 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHh-hccCccchh--c--chHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCC
Confidence 3555566666788888888888777654 333433210 0 12255667777777 8999999999999 455567
Q ss_pred CCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCC
Q 008613 146 KNVKALYRRGQAYKDI---------GRLEEAVSDLSNAHEVSPDD 181 (559)
Q Consensus 146 ~~~kal~~rG~A~~~l---------g~~eeAi~dlekAl~l~P~~ 181 (559)
.++..|...|.+|..+ ...++|+.+|+++.+++|+.
T Consensus 215 ~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~ 259 (374)
T PF13281_consen 215 PDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY 259 (374)
T ss_pred CChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence 7899999999999654 24788999999999999764
No 280
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.43 E-value=1.2 Score=48.29 Aligned_cols=121 Identities=17% Similarity=0.129 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhcCCCCCc---------------------------------------hhh
Q 008613 71 AKMLKKQGNELYSEGR-FSNALQKYLLAKKNLQGIHSS---------------------------------------EGR 110 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~-y~eAi~~Y~kAL~l~p~~~~~---------------------------------------e~~ 110 (559)
+..+..-+..+++.|. -++|+.+++.+++..+.+..- ..+
T Consensus 379 vh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~ 458 (549)
T PF07079_consen 379 VHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITIS 458 (549)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCccccc
Confidence 5556666777777777 566777777777665554321 011
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHH
Q 008613 111 TLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD----GTIAD 186 (559)
Q Consensus 111 ~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~----~~a~~ 186 (559)
+....-...=|..++..|+|.+|..++.=+.++.| ++.+|..+|.++...++|+||..++.. +-|++ ..+..
T Consensus 459 e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~---LP~n~~~~dskvqK 534 (549)
T PF07079_consen 459 EEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK---LPPNERMRDSKVQK 534 (549)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh---CCCchhhHHHHHHH
Confidence 11111222335667789999999999999999999 999999999999999999999998863 44433 33445
Q ss_pred HHHHHHHHH
Q 008613 187 VLRDAKEIL 195 (559)
Q Consensus 187 ~L~~a~~~l 195 (559)
.+..+++-+
T Consensus 535 Al~lCqKh~ 543 (549)
T PF07079_consen 535 ALALCQKHL 543 (549)
T ss_pred HHHHHHHhh
Confidence 555555544
No 281
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.37 E-value=8 Score=41.46 Aligned_cols=103 Identities=15% Similarity=0.038 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhcCC-CCCchhhhhHHHHHHHHHHHHHH---------cCCHHHHHHH
Q 008613 70 AAKMLKKQGNELYS---EGRFSNALQKYLLAKKNLQG-IHSSEGRTLLLACSLNSMSCYLK---------TKQYDECIKV 136 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k---~g~y~eAi~~Y~kAL~l~p~-~~~~e~~~l~~~~~~nlA~~ylk---------lg~y~eAi~~ 136 (559)
........|.++.+ .|+.++|+..+..++..... +++ .|.-+|.+|-. ...+++||..
T Consensus 178 ~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d---------~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~ 248 (374)
T PF13281_consen 178 QHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD---------TLGLLGRIYKDLFLESNFTDRESLDKAIEW 248 (374)
T ss_pred chHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH---------HHHHHHHHHHHHHHHcCccchHHHHHHHHH
Confidence 44555667888888 99999999999996654332 222 44444555433 2347888888
Q ss_pred HHHHHHcCCCC---------------------------------------------HHHHHHHHHHHHHcCCHHHHHHHH
Q 008613 137 GSEVLAYDAKN---------------------------------------------VKALYRRGQAYKDIGRLEEAVSDL 171 (559)
Q Consensus 137 ~~~AL~ldP~~---------------------------------------------~kal~~rG~A~~~lg~~eeAi~dl 171 (559)
|.++.+++|+. ...+-.+..+..-+++++.|+..+
T Consensus 249 Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~ 328 (374)
T PF13281_consen 249 YRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAA 328 (374)
T ss_pred HHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888877643 122334556677778999999999
Q ss_pred HHHHHhCCCC
Q 008613 172 SNAHEVSPDD 181 (559)
Q Consensus 172 ekAl~l~P~~ 181 (559)
++++++.|..
T Consensus 329 e~~~~l~~~~ 338 (374)
T PF13281_consen 329 EKAFKLKPPA 338 (374)
T ss_pred HHHhhcCCcc
Confidence 9999988764
No 282
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.21 E-value=1.9 Score=48.64 Aligned_cols=104 Identities=18% Similarity=0.080 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHcC-----CHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcC
Q 008613 73 MLKKQGNELYSEG-----RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK---QYDECIKVGSEVLAYD 144 (559)
Q Consensus 73 ~lk~~Gn~~~k~g-----~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg---~y~eAi~~~~~AL~ld 144 (559)
....+|.+|++.. ++..|+.+|.++-.+...+ +.+++|.||.... ++..|.++|..|.+.
T Consensus 290 a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~-----------a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~- 357 (552)
T KOG1550|consen 290 AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPD-----------AQYLLGVLYETGTKERDYRRAFEYYSLAAKA- 357 (552)
T ss_pred cccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCch-----------HHHHHHHHHHcCCccccHHHHHHHHHHHHHc-
Confidence 3567888888843 7889999999999875544 8899999999876 678999999999854
Q ss_pred CCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008613 145 AKNVKALYRRGQAYKDI----GRLEEAVSDLSNAHEVSPDDGTIADVLRDA 191 (559)
Q Consensus 145 P~~~kal~~rG~A~~~l----g~~eeAi~dlekAl~l~P~~~~a~~~L~~a 191 (559)
.+..++++++.+|..= .+.+.|+.+|+++.+.. ++.+...++..
T Consensus 358 -G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~ 405 (552)
T KOG1550|consen 358 -GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAF 405 (552)
T ss_pred -CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHH
Confidence 6899999999999743 47899999999999886 33444444443
No 283
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.17 E-value=0.72 Score=51.02 Aligned_cols=98 Identities=9% Similarity=-0.103 Sum_probs=74.2
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHH
Q 008613 84 EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN----VKALYRRGQAYK 159 (559)
Q Consensus 84 ~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~----~kal~~rG~A~~ 159 (559)
......|.+.........|+.. ..++..|.++...|+.++|++.+++++...... .-+++.++.+|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~---------lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~ 316 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSA---------LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHM 316 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcH---------HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHH
Confidence 3444556666666666655543 377889999999999999999999998644443 347999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008613 160 DIGRLEEAVSDLSNAHEVSPDDGTIADVLRD 190 (559)
Q Consensus 160 ~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~ 190 (559)
-+.+|++|..+|.+.++.+.-...++..+.-
T Consensus 317 ~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 317 FQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 9999999999999999876554444444433
No 284
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.84 E-value=2.2 Score=43.71 Aligned_cols=104 Identities=18% Similarity=0.150 Sum_probs=77.9
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcC----C---CC-----
Q 008613 81 LYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK-QYDECIKVGSEVLAYD----A---KN----- 147 (559)
Q Consensus 81 ~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg-~y~eAi~~~~~AL~ld----P---~~----- 147 (559)
..++|+++.|..+|.|+-.+.+ ....+.....+..+||.|...++.+ +|++|+...++++++- . ..
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~-~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e 81 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLN-SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE 81 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHh-cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence 4688999999999999988774 2233455678889999999999999 9999999999999872 1 11
Q ss_pred --HHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhCCCCHHHH
Q 008613 148 --VKALYRRGQAYKDIGRLEE---AVSDLSNAHEVSPDDGTIA 185 (559)
Q Consensus 148 --~kal~~rG~A~~~lg~~ee---Ai~dlekAl~l~P~~~~a~ 185 (559)
...+..++.+|...+.++. |+..++.+-.-.|+.+.+.
T Consensus 82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~ 124 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVF 124 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence 3678888999988887654 3444444444457766554
No 285
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.72 E-value=3.9 Score=42.22 Aligned_cols=89 Identities=8% Similarity=-0.022 Sum_probs=60.4
Q ss_pred cHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHH---------------------------------
Q 008613 50 PEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLL--------------------------------- 96 (559)
Q Consensus 50 pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~k--------------------------------- 96 (559)
.+++..+...+...++...+..+....++.+|+..|+++.|...|..
T Consensus 147 ~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~ 226 (304)
T COG3118 147 AEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQ 226 (304)
T ss_pred ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 34444444555555666666677777888888888888776555322
Q ss_pred -HHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008613 97 -AKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN 147 (559)
Q Consensus 97 -AL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~ 147 (559)
.+.-+|.+ ..+.+.+|..|...|++++|++.+-..++.|-.+
T Consensus 227 ~~~aadPdd---------~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~ 269 (304)
T COG3118 227 RRLAADPDD---------VEAALALADQLHLVGRNEAALEHLLALLRRDRGF 269 (304)
T ss_pred HHHHhCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 11222222 3477889999999999999999998888876654
No 286
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.55 E-value=0.7 Score=44.81 Aligned_cols=96 Identities=11% Similarity=0.069 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHH
Q 008613 112 LLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN---VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD-GTIADV 187 (559)
Q Consensus 112 l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~---~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~-~~a~~~ 187 (559)
+-......+|..+...+++++|+..+..++..--+. .-+-.|++.++..+|++++|+..+..... +.. ..+...
T Consensus 87 Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~el 164 (207)
T COG2976 87 YAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAEL 164 (207)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHH
Confidence 344456678899999999999999999999654432 35678999999999999999998875432 222 345566
Q ss_pred HHHHHHHHHhhcCCCCCccchh
Q 008613 188 LRDAKEILMKEDGHHGPRGLLI 209 (559)
Q Consensus 188 L~~a~~~l~~~~~~~~~~~~~i 209 (559)
.+++.-..++..+++..|++.+
T Consensus 165 rGDill~kg~k~~Ar~ay~kAl 186 (207)
T COG2976 165 RGDILLAKGDKQEARAAYEKAL 186 (207)
T ss_pred hhhHHHHcCchHHHHHHHHHHH
Confidence 6788888888888888888776
No 287
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=92.07 E-value=2.1 Score=47.71 Aligned_cols=107 Identities=15% Similarity=-0.011 Sum_probs=86.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHcCCCCHHHHHHH-
Q 008613 77 QGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKV-GSEVLAYDAKNVKALYRR- 154 (559)
Q Consensus 77 ~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~-~~~AL~ldP~~~kal~~r- 154 (559)
+...+...+....++.....++..+|.... ++.|++.+....|....++.. +..+..+.|++..++..+
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~---------~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 143 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVNPENCP---------AVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLI 143 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcCcccch---------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHH
Confidence 455566677788888889999998888765 899999888887776666554 455999999998877777
Q ss_pred -----HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008613 155 -----GQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAK 192 (559)
Q Consensus 155 -----G~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~ 192 (559)
+..+..+++..++..++++++.+.|.++.+...+-...
T Consensus 144 ~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r 186 (620)
T COG3914 144 RFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTAR 186 (620)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHH
Confidence 99999999999999999999999999977666555553
No 288
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=92.02 E-value=0.37 Score=53.41 Aligned_cols=101 Identities=13% Similarity=0.076 Sum_probs=85.8
Q ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008613 74 LKKQGNELY-SEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALY 152 (559)
Q Consensus 74 lk~~Gn~~~-k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~ 152 (559)
+...+-.|+ .+|+..+|+.+|..++.+.+.+.. ..++.-+|.++.+.|...+|--.+..|+.--|....-+|
T Consensus 215 lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~k-------di~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y 287 (886)
T KOG4507|consen 215 LHNMASFYWRIKGEPYQAVECAMRALHFSSRHNK-------DIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYY 287 (886)
T ss_pred HHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccc-------cchhhhHHHHHHHcccccchhheeehhccCCccccccce
Confidence 444444444 478999999999999999887643 457888999999999999998888899887777777799
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008613 153 RRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181 (559)
Q Consensus 153 ~rG~A~~~lg~~eeAi~dlekAl~l~P~~ 181 (559)
.++.+|..++.|...+..|..+.+..|..
T Consensus 288 ~l~~i~aml~~~N~S~~~ydha~k~~p~f 316 (886)
T KOG4507|consen 288 TLGNIYAMLGEYNHSVLCYDHALQARPGF 316 (886)
T ss_pred eHHHHHHHHhhhhhhhhhhhhhhccCcch
Confidence 99999999999999999999999998865
No 289
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.86 E-value=1.5 Score=45.07 Aligned_cols=69 Identities=16% Similarity=0.161 Sum_probs=64.5
Q ss_pred hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613 109 GRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV 177 (559)
Q Consensus 109 ~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l 177 (559)
..++...++..++..+...++++.++...++.+.++|-+...|+++=.+|...|+...|+..|++.-.+
T Consensus 148 l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 148 LEELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 456678899999999999999999999999999999999999999999999999999999999988774
No 290
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.65 E-value=1.3 Score=44.85 Aligned_cols=110 Identities=8% Similarity=-0.084 Sum_probs=88.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008613 80 ELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK-QYDECIKVGSEVLAYDAKNVKALYRRGQAY 158 (559)
Q Consensus 80 ~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg-~y~eAi~~~~~AL~ldP~~~kal~~rG~A~ 158 (559)
.+.+..+-..|+.+-..+|.++|.+-. +|..|-.|+..++ +..+-+++.+++++-+|.|...|+.|-.+.
T Consensus 52 I~~~~E~S~RAl~LT~d~i~lNpAnYT---------VW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~iv 122 (318)
T KOG0530|consen 52 IIAKNEKSPRALQLTEDAIRLNPANYT---------VWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIV 122 (318)
T ss_pred HHhccccCHHHHHHHHHHHHhCcccch---------HHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHH
Confidence 345566678899999999999998855 6777777776665 578888999999999999999999999999
Q ss_pred HHcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 008613 159 KDIGRLE-EAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE 198 (559)
Q Consensus 159 ~~lg~~e-eAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~ 198 (559)
..+|++. .-+...+..+..+..+--+|+...-+....+..
T Consensus 123 e~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~ 163 (318)
T KOG0530|consen 123 ELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDY 163 (318)
T ss_pred HHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhH
Confidence 9999888 888888999988887766776666555555443
No 291
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=91.56 E-value=9.4 Score=43.63 Aligned_cols=139 Identities=14% Similarity=0.093 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHhH-H---hHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHc
Q 008613 53 IATMRARIDAQMN-Y---EFNAAKMLKKQGNELY-SEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT 127 (559)
Q Consensus 53 ~~aa~~~l~~~~~-~---~~~~a~~lk~~Gn~~~-k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylkl 127 (559)
|+.+...++...+ + -...+......|..++ ...++++|..+..|++.+.... ...+++..+.+-++.+|.+.
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~---~~~d~k~~~~~ll~~i~~~~ 113 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERH---RLTDLKFRCQFLLARIYFKT 113 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc---chHHHHHHHHHHHHHHHHhc
Confidence 3445566666552 2 2335888888999988 7899999999999999997762 34566666777889999988
Q ss_pred CCHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHH
Q 008613 128 KQYDECIKVGSEVLAYDAK----NVKALYRRGQAYK--DIGRLEEAVSDLSNAHEVS--PDDGTIADVLRDAKEIL 195 (559)
Q Consensus 128 g~y~eAi~~~~~AL~ldP~----~~kal~~rG~A~~--~lg~~eeAi~dlekAl~l~--P~~~~a~~~L~~a~~~l 195 (559)
+... |+..++++|+..-+ .+..++++-.+.. ..+++..|+..++....+. ..++.+.-.+......+
T Consensus 114 ~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l 188 (608)
T PF10345_consen 114 NPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALL 188 (608)
T ss_pred CHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHH
Confidence 8777 99999999987554 4455555543322 2368999999999998876 45655544444443333
No 292
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.46 E-value=0.43 Score=33.13 Aligned_cols=31 Identities=39% Similarity=0.498 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008613 148 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVS 178 (559)
Q Consensus 148 ~kal~~rG~A~~~lg~~eeAi~dlekAl~l~ 178 (559)
..++.++|.+|...|+|++|+..+++++.+.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 3578999999999999999999999999863
No 293
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=91.15 E-value=9.1 Score=40.92 Aligned_cols=105 Identities=9% Similarity=0.019 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-----CC-------C---------CchhhhhHHHHHHHHHHHHHHcCC
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQ-----GI-------H---------SSEGRTLLLACSLNSMSCYLKTKQ 129 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p-----~~-------~---------~~e~~~l~~~~~~nlA~~ylklg~ 129 (559)
++.+...+.++..+|++..|.++.++||=... .. . ..+.+.+ -.+++.......+.|.
T Consensus 40 idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~f-flal~r~i~~L~~RG~ 118 (360)
T PF04910_consen 40 IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQF-FLALFRYIQSLGRRGC 118 (360)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHH-HHHHHHHHHHHHhcCc
Confidence 89999999999999999999999988873332 11 0 0123333 3455666788889999
Q ss_pred HHHHHHHHHHHHHcCCC-CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008613 130 YDECIKVGSEVLAYDAK-NV-KALYRRGQAYKDIGRLEEAVSDLSNAHE 176 (559)
Q Consensus 130 y~eAi~~~~~AL~ldP~-~~-kal~~rG~A~~~lg~~eeAi~dlekAl~ 176 (559)
|..|++.|.-.+.+||. ++ -+++.+-......++|+--+..++....
T Consensus 119 ~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 119 WRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 99999999999999998 65 4566666666777888888877776554
No 294
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.11 E-value=2.2 Score=45.74 Aligned_cols=99 Identities=16% Similarity=0.161 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD------ 144 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ld------ 144 (559)
-..+.+.|..|+.-|+++.|++.|.++-.++..... .+..|.|+-.+-..+++|.....+..+|...-
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~kh------vInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~ 223 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKH------VINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENL 223 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHH------HHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhH
Confidence 455778999999999999999999997776544322 45678888888888999999999888887651
Q ss_pred -C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008613 145 -A-KNVKALYRRGQAYKDIGRLEEAVSDLSNAH 175 (559)
Q Consensus 145 -P-~~~kal~~rG~A~~~lg~~eeAi~dlekAl 175 (559)
+ -.++..+.-|.+++.+++|..|+++|-.+.
T Consensus 224 ~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 224 AQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 0 124678888999999999999999986553
No 295
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=91.02 E-value=2.4 Score=42.70 Aligned_cols=69 Identities=16% Similarity=0.217 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008613 70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVL 141 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL 141 (559)
........|..|+..|+|++|+++|+.+......+.- ..+...++..+..|+.++|+.+..+..+-+++
T Consensus 177 ~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW---~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 177 ASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGW---WSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3455668999999999999999999999766554443 45677788899999999999999999887765
No 296
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.02 E-value=3 Score=39.35 Aligned_cols=84 Identities=13% Similarity=0.014 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008613 114 LACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE 193 (559)
Q Consensus 114 ~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~ 193 (559)
...+..+..+-++.++.+++...+..+--+.|+.+.....-|..+...|+|.+|+..|+.+..-.|..+.....+..+..
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 34566777788888999999999999999999999999999999999999999999999998888888888888888877
Q ss_pred HHHh
Q 008613 194 ILMK 197 (559)
Q Consensus 194 ~l~~ 197 (559)
.+++
T Consensus 90 ~~~D 93 (160)
T PF09613_consen 90 ALGD 93 (160)
T ss_pred HcCC
Confidence 6654
No 297
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=90.92 E-value=1 Score=46.18 Aligned_cols=68 Identities=15% Similarity=0.124 Sum_probs=59.6
Q ss_pred hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008613 109 GRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHE 176 (559)
Q Consensus 109 ~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~ 176 (559)
...++..++...+..|++.|.|.+|+..+.++++++|-+...+..+=..|..+|+--++++.|++.-+
T Consensus 274 le~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 274 LEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 45666677777899999999999999999999999999999999999999999998888888876543
No 298
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=90.68 E-value=6.1 Score=40.17 Aligned_cols=107 Identities=19% Similarity=0.071 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcC-------CHHHHHHHHHH
Q 008613 71 AKMLKKQGNELYS----EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK-------QYDECIKVGSE 139 (559)
Q Consensus 71 a~~lk~~Gn~~~k----~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg-------~y~eAi~~~~~ 139 (559)
+.....+|..|.. ..++.+|...|.+|........ ..+.++++.+|..-. +...|+..|.+
T Consensus 109 ~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a--------~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~ 180 (292)
T COG0790 109 AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA--------ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRK 180 (292)
T ss_pred HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH--------HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHH
Confidence 4566778888877 5699999999999998633321 224778888887752 23379999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008613 140 VLAYDAKNVKALYRRGQAYKD----IGRLEEAVSDLSNAHEVSPDDGTIADVLR 189 (559)
Q Consensus 140 AL~ldP~~~kal~~rG~A~~~----lg~~eeAi~dlekAl~l~P~~~~a~~~L~ 189 (559)
+.... ++.+.+++|.+|.. -.++++|+.+|+++.+... ......++
T Consensus 181 aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~ 230 (292)
T COG0790 181 AAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG 230 (292)
T ss_pred HHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence 88775 89999999988854 3489999999999998765 55555555
No 299
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=90.61 E-value=1.1 Score=38.00 Aligned_cols=57 Identities=21% Similarity=0.310 Sum_probs=46.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008613 123 CYLKTKQYDECIKVGSEVLAYDAK---------NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP 179 (559)
Q Consensus 123 ~ylklg~y~eAi~~~~~AL~ldP~---------~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P 179 (559)
-.++.++|.+|++.+.+.+..... ...++.+++..+...|++++|+..+++++.+..
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 345789999998888887765321 246789999999999999999999999999854
No 300
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=90.58 E-value=34 Score=40.30 Aligned_cols=109 Identities=18% Similarity=0.126 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-
Q 008613 69 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN- 147 (559)
Q Consensus 69 ~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~- 147 (559)
..+.-....+-......+|++|-.+..++....+.-.......+.+....-+|.+....+++++|++.++.++..-|.+
T Consensus 413 ~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~ 492 (894)
T COG2909 413 STPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA 492 (894)
T ss_pred hCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc
Confidence 3455666788888999999999998888777665532233345555666667888888999999999999999987765
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613 148 ----VKALYRRGQAYKDIGRLEEAVSDLSNAHEV 177 (559)
Q Consensus 148 ----~kal~~rG~A~~~lg~~eeAi~dlekAl~l 177 (559)
..++...|.+..-.|++++|......+.+.
T Consensus 493 ~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 493 YRSRIVALSVLGEAAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHH
Confidence 578999999999999999999999888877
No 301
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.45 E-value=17 Score=40.09 Aligned_cols=102 Identities=21% Similarity=0.161 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008613 68 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN 147 (559)
Q Consensus 68 ~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~ 147 (559)
...+....-+|.....-+.|+.|...|..|.++... .++.+.|-.|+|..|++.++-+. .|.-.=.+.|.|
T Consensus 364 ~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~------~dl~a~~nlnlAi~YL~~~~~ed---~y~~ld~i~p~n 434 (629)
T KOG2300|consen 364 AHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTES------IDLQAFCNLNLAISYLRIGDAED---LYKALDLIGPLN 434 (629)
T ss_pred HhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH------HHHHHHHHHhHHHHHHHhccHHH---HHHHHHhcCCCC
Confidence 345777888999999999999999999999987433 45678899999999999766443 333233345653
Q ss_pred ----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008613 148 ----------VKALYRRGQAYKDIGRLEEAVSDLSNAHEVS 178 (559)
Q Consensus 148 ----------~kal~~rG~A~~~lg~~eeAi~dlekAl~l~ 178 (559)
..++|..|.-.+..+++.||...+++.++..
T Consensus 435 t~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 435 TNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 3578889999999999999999999999986
No 302
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=90.26 E-value=0.43 Score=33.86 Aligned_cols=29 Identities=21% Similarity=0.257 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613 149 KALYRRGQAYKDIGRLEEAVSDLSNAHEV 177 (559)
Q Consensus 149 kal~~rG~A~~~lg~~eeAi~dlekAl~l 177 (559)
.+|.++|.+-...++|++|+.||+++|++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45677777777777777777777777765
No 303
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=90.21 E-value=6.2 Score=45.82 Aligned_cols=107 Identities=16% Similarity=0.094 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hcCCCCCc----hhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKK-------NLQGIHSS----EGRTLLLACSLNSMSCYLKTKQYDECIKVGSE 139 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~-------l~p~~~~~----e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~ 139 (559)
-..+++.+..+-.+++...|+++|.|+-. +..++|.. -.+.-...+|..-|+.+...|+.+.|+.+|..
T Consensus 858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 34577888888888999999999987531 11222210 01111225777889999999999999999998
Q ss_pred HHHc---------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613 140 VLAY---------------------DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV 177 (559)
Q Consensus 140 AL~l---------------------dP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l 177 (559)
|-.. ...+..+.|.+|.-|.+.|++.+|+..|.+|-..
T Consensus 938 A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 938 AKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred hhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 8643 3356678999999999999999999999887543
No 304
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=90.13 E-value=2.5 Score=47.73 Aligned_cols=37 Identities=8% Similarity=0.086 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 008613 67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQG 103 (559)
Q Consensus 67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~ 103 (559)
.+..++...+.|..+-...-|.++.+.|.+.+.+++.
T Consensus 507 riaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~ 543 (835)
T KOG2047|consen 507 RIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKW 543 (835)
T ss_pred hcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCC
Confidence 3334444555555555555555555555555555443
No 305
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.95 E-value=13 Score=40.95 Aligned_cols=127 Identities=12% Similarity=0.033 Sum_probs=100.1
Q ss_pred HHHccCcHHHHHHHHHHHHHhHHhHH---HHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHH
Q 008613 44 KLANASPEEIATMRARIDAQMNYEFN---AAKMLKKQGNEL-YSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLN 119 (559)
Q Consensus 44 ~~~~~~pee~~aa~~~l~~~~~~~~~---~a~~lk~~Gn~~-~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~n 119 (559)
......|..|+.+..++++.+++.+. .+......|..+ +-.++++.|...+++|+.+....|.- .+++-..+.-
T Consensus 16 ~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~f--ydvKf~a~Sl 93 (629)
T KOG2300|consen 16 HFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSF--YDVKFQAASL 93 (629)
T ss_pred HHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccH--HhhhhHHHHH
Confidence 34456788888888899888885333 466666777765 45788999999999999998887753 2556667888
Q ss_pred HHHHHHHcC-CHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHcCCHHHHHHHHH
Q 008613 120 SMSCYLKTK-QYDECIKVGSEVLAYDAKNV----KALYRRGQAYKDIGRLEEAVSDLS 172 (559)
Q Consensus 120 lA~~ylklg-~y~eAi~~~~~AL~ldP~~~----kal~~rG~A~~~lg~~eeAi~dle 172 (559)
++.||.... .+..+....+++|++....+ +.++.++..+.--.+|.-|++.+.
T Consensus 94 La~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLa 151 (629)
T KOG2300|consen 94 LAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLA 151 (629)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHh
Confidence 999999888 78999999999999976654 667788888888899998887753
No 306
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.52 E-value=13 Score=40.06 Aligned_cols=105 Identities=11% Similarity=-0.021 Sum_probs=85.0
Q ss_pred HHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008613 82 YSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK--QYDECIKVGSEVLAYDAKNVKALYRRGQAYK 159 (559)
Q Consensus 82 ~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg--~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~ 159 (559)
.+..-+++-+.+-..+|..+|.... +|+.|..++.+.. +|..-++.|.+++++||.|..+|..|-.++.
T Consensus 86 ek~~~ld~eL~~~~~~L~~npksY~---------aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~ 156 (421)
T KOG0529|consen 86 EKQALLDEELKYVESALKVNPKSYG---------AWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVE 156 (421)
T ss_pred HHHHhhHHHHHHHHHHHHhCchhHH---------HHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHH
Confidence 3334567778888899999998765 9999999998776 4789999999999999999998877766665
Q ss_pred HcCC----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008613 160 DIGR----LEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 195 (559)
Q Consensus 160 ~lg~----~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l 195 (559)
.... ..+-+....+++.-++.|-.+|.....+...+
T Consensus 157 ~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l 196 (421)
T KOG0529|consen 157 QAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTL 196 (421)
T ss_pred HHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHh
Confidence 4433 57788888999988888888888777776655
No 307
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=89.36 E-value=1.1 Score=37.57 Aligned_cols=56 Identities=11% Similarity=0.345 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCHHHHHHHHHHhcc-----CCHHHHHHHHHH
Q 008613 459 PAMKQMFSSMVKNMSPEMMANMSEQFGIKLSREDTEKFQQTMSS-----LSLNDLDRMMLW 514 (559)
Q Consensus 459 p~~~~m~~~mmk~m~p~~~~~m~~~~g~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 514 (559)
+=++++...=++++|++.+-.-|+|+|++++++||++..+-|+. ..+++-.++.+=
T Consensus 2 ~i~qqiVn~Kln~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llke 62 (85)
T PF11116_consen 2 KIIQQIVNQKLNNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKE 62 (85)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Confidence 34778888889999999999999999999999999999998875 455666655553
No 308
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=88.86 E-value=14 Score=39.59 Aligned_cols=113 Identities=14% Similarity=0.146 Sum_probs=81.9
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHH---HHHHHc
Q 008613 67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVG---SEVLAY 143 (559)
Q Consensus 67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~---~~AL~l 143 (559)
.+.-+-....-+..||+.|+..++-..+..+++..|.- .++.+|....--+.++.-+ .++..+
T Consensus 259 ~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP--------------~ia~lY~~ar~gdta~dRlkRa~~L~sl 324 (531)
T COG3898 259 APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP--------------DIALLYVRARSGDTALDRLKRAKKLESL 324 (531)
T ss_pred CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh--------------HHHHHHHHhcCCCcHHHHHHHHHHHHhc
Confidence 33444455556778999999999999999999876653 2344444444444444444 445567
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008613 144 DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI 194 (559)
Q Consensus 144 dP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~ 194 (559)
.|+|....+.++.+-+.-|+|..|....+.+....|.. .+.-.+..+.+.
T Consensus 325 k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeA 374 (531)
T COG3898 325 KPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEA 374 (531)
T ss_pred CccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhh
Confidence 89999999999999999999999999999999999875 345555555443
No 309
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=87.56 E-value=6.7 Score=41.09 Aligned_cols=90 Identities=7% Similarity=-0.075 Sum_probs=70.4
Q ss_pred HHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008613 92 QKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK------------QYDECIKVGSEVLAYDAKNVKALYRRGQAYK 159 (559)
Q Consensus 92 ~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg------------~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~ 159 (559)
..|.+.++-+|.+.+ .|..+...--.+- -.+..+..|++||+.+|++.+.+..+=.+..
T Consensus 6 ~el~~~v~~~P~di~---------~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~ 76 (321)
T PF08424_consen 6 AELNRRVRENPHDIE---------AWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGE 76 (321)
T ss_pred HHHHHHHHhCcccHH---------HHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 457777887777754 5555544333332 2567788999999999999999988888888
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008613 160 DIGRLEEAVSDLSNAHEVSPDDGTIADVLRD 190 (559)
Q Consensus 160 ~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~ 190 (559)
.....++..+-+++++..+|++..+|..+-.
T Consensus 77 ~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~ 107 (321)
T PF08424_consen 77 KVWDSEKLAKKWEELLFKNPGSPELWREYLD 107 (321)
T ss_pred HhCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 9999999999999999999999888875543
No 310
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=87.55 E-value=3.8 Score=33.65 Aligned_cols=30 Identities=20% Similarity=0.192 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKN 100 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l 100 (559)
+..+...+..+-+.|+|.+||.+|.+++++
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 455556666667777777777777666653
No 311
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=87.45 E-value=0.84 Score=32.40 Aligned_cols=28 Identities=11% Similarity=0.043 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008613 116 CSLNSMSCYLKTKQYDECIKVGSEVLAY 143 (559)
Q Consensus 116 ~~~nlA~~ylklg~y~eAi~~~~~AL~l 143 (559)
+|..+|.+.+...+|+.|+.+|.++|++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 7889999999999999999999999986
No 312
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=87.19 E-value=4 Score=44.40 Aligned_cols=119 Identities=12% Similarity=0.182 Sum_probs=70.0
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCC------chhhhhHHHHHHHHHHHHHHc--CCH-----HHH
Q 008613 67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS------SEGRTLLLACSLNSMSCYLKT--KQY-----DEC 133 (559)
Q Consensus 67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~------~e~~~l~~~~~~nlA~~ylkl--g~y-----~eA 133 (559)
.+.........|-.++..|+|.+|+..|+.+|...|-..- .+.+++...|.-.+-.+-+++ +.. ++.
T Consensus 200 ~l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~ 279 (422)
T PF06957_consen 200 SLSSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQ 279 (422)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhH
Confidence 3344555666899999999999999999999988664321 134455555544433333322 221 122
Q ss_pred HHHHHHH-----HHcCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008613 134 IKVGSEV-----LAYDAKNVKALYRRGQAY-KDIGRLEEAVSDLSNAHEVSPDDGTIA 185 (559)
Q Consensus 134 i~~~~~A-----L~ldP~~~kal~~rG~A~-~~lg~~eeAi~dlekAl~l~P~~~~a~ 185 (559)
.+.++-+ ++|.|.+...-+|.|... +++++|.-|....++.|++.|..+.+.
T Consensus 280 kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a~ 337 (422)
T PF06957_consen 280 KRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVAE 337 (422)
T ss_dssp HHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHHH
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHH
Confidence 1222221 244565555555666655 588999999999999999999876443
No 313
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.98 E-value=3.3 Score=46.65 Aligned_cols=71 Identities=18% Similarity=0.104 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008613 114 LACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK------NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI 184 (559)
Q Consensus 114 ~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~------~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a 184 (559)
..++.|-|.-+++.++|..+++.|...++.-|. .+|....++.||+.+.+.+.|++.++.|-+.+|.++-.
T Consensus 354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~ 430 (872)
T KOG4814|consen 354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLC 430 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHH
Confidence 346667888899999999999999999987664 36888999999999999999999999999999987643
No 314
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=86.87 E-value=1.2 Score=46.18 Aligned_cols=87 Identities=13% Similarity=0.031 Sum_probs=73.7
Q ss_pred HHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH-HHHHHHHcCCHHHHHHHHH
Q 008613 94 YLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYR-RGQAYKDIGRLEEAVSDLS 172 (559)
Q Consensus 94 Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~-rG~A~~~lg~~eeAi~dle 172 (559)
|.++-...+.++. +|...+....+.+-|.+-...|.+++++.|.|+..|.. -+.-|...++++.+...+.
T Consensus 96 ~~R~tnkff~D~k---------~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~ 166 (435)
T COG5191 96 LYRSTNKFFNDPK---------IWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFL 166 (435)
T ss_pred eehhhhcCCCCcH---------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHH
Confidence 5556666677765 88888888888899999999999999999999988776 5566788899999999999
Q ss_pred HHHHhCCCCHHHHHHHH
Q 008613 173 NAHEVSPDDGTIADVLR 189 (559)
Q Consensus 173 kAl~l~P~~~~a~~~L~ 189 (559)
+++.++|+.+.+|...=
T Consensus 167 ~glR~N~~~p~iw~eyf 183 (435)
T COG5191 167 KGLRMNSRSPRIWIEYF 183 (435)
T ss_pred hhhccCCCCchHHHHHH
Confidence 99999999998887543
No 315
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.52 E-value=5.2 Score=39.15 Aligned_cols=71 Identities=14% Similarity=0.043 Sum_probs=53.8
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHH
Q 008613 58 ARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 134 (559)
Q Consensus 58 ~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi 134 (559)
.-++......+..++....+|..|. ..+..+|+.+|.++|++.+.+. .+...++..++.+|.++++|+.|-
T Consensus 128 ~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~-----~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 128 RFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDD-----NFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCC-----CCCHHHHHHHHHHHHHhcchhhhh
Confidence 3334444456667888888887776 5778999999999999977652 234568889999999999998874
No 316
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.48 E-value=25 Score=32.83 Aligned_cols=110 Identities=11% Similarity=-0.033 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 150 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka 150 (559)
...+.+.........+++++.......=-+.|..+. +-.--+.+|...|+|.+|+..++.+.+-.+..+-+
T Consensus 10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e---------~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~ 80 (153)
T TIGR02561 10 LGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKE---------LDMFDGWLLIARGNYDEAARILRELLSSAGAPPYG 80 (153)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccc---------cchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHH
Confidence 444555556666688999988888777777788776 55667889999999999999999999888888888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008613 151 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA 191 (559)
Q Consensus 151 l~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a 191 (559)
--.++.|+..+|+.+-=.-.. .++.-+ .++++...++.+
T Consensus 81 kAL~A~CL~al~Dp~Wr~~A~-~~le~~-~~~~a~~Lv~al 119 (153)
T TIGR02561 81 KALLALCLNAKGDAEWHVHAD-EVLARD-ADADAVALVRAL 119 (153)
T ss_pred HHHHHHHHHhcCChHHHHHHH-HHHHhC-CCHhHHHHHHHH
Confidence 888899999999865533222 233333 344444444443
No 317
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=86.45 E-value=28 Score=39.71 Aligned_cols=120 Identities=9% Similarity=-0.037 Sum_probs=95.4
Q ss_pred HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCC---c-h----hhhh--HHHHHHHHHHHHHHcCCHHHHHH
Q 008613 66 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS---S-E----GRTL--LLACSLNSMSCYLKTKQYDECIK 135 (559)
Q Consensus 66 ~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~---~-e----~~~l--~~~~~~nlA~~ylklg~y~eAi~ 135 (559)
+....+..|.+-|..-++..+++.|+.+..+|..+ |..+. . . ...+ -..+|.-.+......|-++.+..
T Consensus 420 ~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~ 498 (835)
T KOG2047|consen 420 TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKA 498 (835)
T ss_pred chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHH
Confidence 45566889999999999999999999999999864 44322 0 0 0000 22467777788888899999999
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHH
Q 008613 136 VGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP--DDGTIAD 186 (559)
Q Consensus 136 ~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P--~~~~a~~ 186 (559)
.|+++|.|.---|....+.|.-+.....++++.+.|++.+.+.+ .-.++|.
T Consensus 499 vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~ 551 (835)
T KOG2047|consen 499 VYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWN 551 (835)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHH
Confidence 99999999888899999999999999999999999999999975 3345554
No 318
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=86.31 E-value=25 Score=35.97 Aligned_cols=89 Identities=11% Similarity=-0.024 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Q 008613 87 FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD-ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLE 165 (559)
Q Consensus 87 y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~-eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~e 165 (559)
..+-+++.++.++-+|.+-. +|..|-.+...+|++. .-++.+..+|..|..|..+|..|--++...+.|+
T Consensus 94 L~~El~~l~eI~e~npKNYQ---------vWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~ 164 (318)
T KOG0530|consen 94 LNKELEYLDEIIEDNPKNYQ---------VWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYE 164 (318)
T ss_pred HHHHHHHHHHHHHhCccchh---------HHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHH
Confidence 34456667777776666644 7777777777777777 7777888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhCCCCHHH
Q 008613 166 EAVSDLSNAHEVSPDDGTI 184 (559)
Q Consensus 166 eAi~dlekAl~l~P~~~~a 184 (559)
.-+......|+.|-.|..+
T Consensus 165 ~EL~y~~~Lle~Di~NNSA 183 (318)
T KOG0530|consen 165 DELAYADELLEEDIRNNSA 183 (318)
T ss_pred HHHHHHHHHHHHhhhccch
Confidence 8887777777766544333
No 319
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=86.24 E-value=2 Score=46.88 Aligned_cols=89 Identities=17% Similarity=0.081 Sum_probs=47.7
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008613 81 LYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKD 160 (559)
Q Consensus 81 ~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~ 160 (559)
.+..|+.-.|-.....+|+..|.+|. ...-++.++..+|.|+.+..+..-+-.+--.-.++..-+-..+..
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~---------~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~ 369 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPV---------LIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHG 369 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCch---------hhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhc
Confidence 34455555555556666665555554 333445555666666666655554444433334444444455556
Q ss_pred cCCHHHHHHHHHHHHHhC
Q 008613 161 IGRLEEAVSDLSNAHEVS 178 (559)
Q Consensus 161 lg~~eeAi~dlekAl~l~ 178 (559)
+++|++|....+..+.-.
T Consensus 370 l~r~~~a~s~a~~~l~~e 387 (831)
T PRK15180 370 LARWREALSTAEMMLSNE 387 (831)
T ss_pred hhhHHHHHHHHHHHhccc
Confidence 666666665555554433
No 320
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=86.19 E-value=21 Score=38.58 Aligned_cols=118 Identities=11% Similarity=-0.031 Sum_probs=84.7
Q ss_pred HHHHHcCCHH-HHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHH-----HHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008613 79 NELYSEGRFS-NALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMS-----CYLKTKQYDECIKVGSEVLAYDAKNVKALY 152 (559)
Q Consensus 79 n~~~k~g~y~-eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~-----~ylklg~y~eAi~~~~~AL~ldP~~~kal~ 152 (559)
....+.|.|+ +++.+=.+.+..+|.... ..++...++..+-. -..+..-+++-+.+...+|+.+|+...+|+
T Consensus 36 ~~~r~~~~yd~e~l~lt~~ll~~npe~~t--~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~ 113 (421)
T KOG0529|consen 36 QKKREAKEYDEEHLELTSELLEKNPEFYT--VWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWH 113 (421)
T ss_pred HHHHhccccchHHHHHHHHHHhhCchhhh--hhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHH
Confidence 3444556664 477777777777776532 22222223333333 333444677778888999999999999999
Q ss_pred HHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 008613 153 RRGQAYKDIGR--LEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE 198 (559)
Q Consensus 153 ~rG~A~~~lg~--~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~ 198 (559)
.|..++..... |..-+..+++++++||.+-..|...+.+-....+.
T Consensus 114 hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~ 161 (421)
T KOG0529|consen 114 HRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERS 161 (421)
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcc
Confidence 99999997765 68899999999999999988888888777666443
No 321
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=86.01 E-value=4.5 Score=39.96 Aligned_cols=83 Identities=17% Similarity=0.021 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH-H
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV-K 149 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~-k 149 (559)
+-.++.+++......=+..|++.|.+++....... .... ...+.+-+|.++.++|++++|++.+.+++...-.+. .
T Consensus 125 AWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~-~~~~--~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~ 201 (214)
T PF09986_consen 125 AWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPI-EGMD--EATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEP 201 (214)
T ss_pred HHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCC-CCch--HHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcH
Confidence 44444444444444446778888888887644311 1112 234788899999999999999999999996533222 2
Q ss_pred HHHHHHH
Q 008613 150 ALYRRGQ 156 (559)
Q Consensus 150 al~~rG~ 156 (559)
.+..++.
T Consensus 202 ~l~~~AR 208 (214)
T PF09986_consen 202 KLKDMAR 208 (214)
T ss_pred HHHHHHH
Confidence 4444443
No 322
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=85.96 E-value=13 Score=37.15 Aligned_cols=115 Identities=14% Similarity=0.095 Sum_probs=71.8
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCCCCc---hhhhhHHHHHHHHHHHHHHcCC-HHHHH-HHHHHHHH-c-CCCCH--HHH
Q 008613 81 LYSEGRFSNALQKYLLAKKNLQGIHSS---EGRTLLLACSLNSMSCYLKTKQ-YDECI-KVGSEVLA-Y-DAKNV--KAL 151 (559)
Q Consensus 81 ~~k~g~y~eAi~~Y~kAL~l~p~~~~~---e~~~l~~~~~~nlA~~ylklg~-y~eAi-~~~~~AL~-l-dP~~~--kal 151 (559)
+|..|+|+.|++....||+..-..|+. ..-.+.+.-.+.-+....+.|+ ++-.. ..+..+.. . -|+.+ |.|
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~ 172 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLY 172 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHH
Confidence 678999999999999999987666642 2233344444455555556665 22222 11222211 1 14444 455
Q ss_pred HHHHHHHH---------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008613 152 YRRGQAYK---------DIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM 196 (559)
Q Consensus 152 ~~rG~A~~---------~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~ 196 (559)
...|.+++ ..++...|+..|++|+.++|+- .+...+..+..+++
T Consensus 173 K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~-GVK~~i~~l~~~lr 225 (230)
T PHA02537 173 KAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC-GVKKDIERLERRLK 225 (230)
T ss_pred HHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC-ChHHHHHHHHHHHh
Confidence 55566663 4567889999999999999764 35555666666664
No 323
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=85.91 E-value=6.6 Score=39.40 Aligned_cols=62 Identities=11% Similarity=-0.134 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008613 90 ALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKD 160 (559)
Q Consensus 90 Ai~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~ 160 (559)
|+.+|.+|+.+.|.... .|+.+|.++...+++=.|+-+|.+++-..-..+.+.-++...+..
T Consensus 1 A~~~Y~~A~~l~P~~G~---------p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGN---------PYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSH---------HHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCC---------cccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 78899999999999876 899999999999999999999999997766678888888888877
No 324
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.90 E-value=12 Score=42.19 Aligned_cols=111 Identities=17% Similarity=0.151 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHh-----cCCCCCchhhhhHHHHHHHHHHHHHHcC-----CHHHHHH
Q 008613 71 AKMLKKQGNELYS-----EGRFSNALQKYLLAKKN-----LQGIHSSEGRTLLLACSLNSMSCYLKTK-----QYDECIK 135 (559)
Q Consensus 71 a~~lk~~Gn~~~k-----~g~y~eAi~~Y~kAL~l-----~p~~~~~e~~~l~~~~~~nlA~~ylklg-----~y~eAi~ 135 (559)
+......|.+++. ..+.+.|+.+|..+..- ...++. +.+.+|.||.+.. ++..|+.
T Consensus 244 ~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~---------a~~~lg~~Y~~g~~~~~~d~~~A~~ 314 (552)
T KOG1550|consen 244 SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPP---------AQYGLGRLYLQGLGVEKIDYEKALK 314 (552)
T ss_pred hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCc---------cccHHHHHHhcCCCCccccHHHHHH
Confidence 4445556666554 47899999999998771 011222 6788999999854 6788999
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008613 136 VGSEVLAYDAKNVKALYRRGQAYKDIG---RLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI 194 (559)
Q Consensus 136 ~~~~AL~ldP~~~kal~~rG~A~~~lg---~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~ 194 (559)
.|.++-.+ +++.+.+++|.+|..-. ++..|+.+|..|... .+..+...+..+...
T Consensus 315 ~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~ 372 (552)
T KOG1550|consen 315 LYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYEL 372 (552)
T ss_pred HHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHh
Confidence 99999866 57889999999998655 578999999988764 555666666665443
No 325
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=85.62 E-value=15 Score=42.90 Aligned_cols=95 Identities=17% Similarity=0.143 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH----------
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEV---------- 140 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~A---------- 140 (559)
.+++-.+-..|...|.|++|++.-..--++ + +-..|||.|.-+...++.+.|+++|+++
T Consensus 826 ckR~DLlNKlyQs~g~w~eA~eiAE~~DRi---H--------Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rm 894 (1416)
T KOG3617|consen 826 CKRYDLLNKLYQSQGMWSEAFEIAETKDRI---H--------LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRM 894 (1416)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHhhccce---e--------hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHH
Confidence 334434444566667777776643322111 1 2347889999888999999999999875
Q ss_pred HHcCCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008613 141 LAYDAK----------NVKALYRRGQAYKDIGRLEEAVSDLSNAHE 176 (559)
Q Consensus 141 L~ldP~----------~~kal~~rG~A~~~lg~~eeAi~dlekAl~ 176 (559)
|.-+|. +.+.|.+-|+-+...|+.+.|+..|+.|-.
T Consensus 895 L~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 895 LKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 233443 346778889999999999999999988754
No 326
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=84.58 E-value=9.1 Score=40.92 Aligned_cols=103 Identities=19% Similarity=0.019 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--
Q 008613 70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQG-IHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK-- 146 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~-~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~-- 146 (559)
--..+......+.++|-|..|++..+-.+.++|. ||- -+++-+=...++.++|+--|+.++........
T Consensus 102 fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~--------g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~ 173 (360)
T PF04910_consen 102 FFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPL--------GVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNW 173 (360)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcc--------hhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhh
Confidence 3455666777889999999999999999999999 663 25556666777889999999988877653221
Q ss_pred ---CHHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHHhCCC
Q 008613 147 ---NVKALYRRGQAYKDIGRL---------------EEAVSDLSNAHEVSPD 180 (559)
Q Consensus 147 ---~~kal~~rG~A~~~lg~~---------------eeAi~dlekAl~l~P~ 180 (559)
-|-.-|.++.|+..+++- ++|...+.+|+...|.
T Consensus 174 ~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 174 LSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred hhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 235678899999999998 8999999999998875
No 327
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=84.01 E-value=3.3 Score=41.60 Aligned_cols=62 Identities=11% Similarity=-0.083 Sum_probs=52.3
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008613 133 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI 194 (559)
Q Consensus 133 Ai~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~ 194 (559)
|+.+|.+|+.+.|++...|..+|..+...+++-+|+-+|-|++...--.+.+..+|..+-.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999997654557788888877666
No 328
>smart00727 STI1 Heat shock chaperonin-binding motif.
Probab=83.91 E-value=2 Score=30.57 Aligned_cols=31 Identities=26% Similarity=0.645 Sum_probs=27.3
Q ss_pred HHHhcCCCHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008613 451 QMRNQMNDPAMKQMFSSMVKNMSPEMMANMSEQ 483 (559)
Q Consensus 451 ~m~~~m~~p~~~~m~~~mmk~m~p~~~~~m~~~ 483 (559)
.+..+|+||.+++++..|+.| |+.+..|-++
T Consensus 3 ~~~~~l~~P~~~~~l~~~~~n--P~~~~~~~~~ 33 (41)
T smart00727 3 EMALRLQNPQVQSLLQDMQQN--PDMLAQMLQE 33 (41)
T ss_pred HHHHHHcCHHHHHHHHHHHHC--HHHHHHHHHh
Confidence 577888899999999999999 9999888765
No 329
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=83.64 E-value=7.2 Score=42.73 Aligned_cols=53 Identities=13% Similarity=0.150 Sum_probs=38.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008613 127 TKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP 179 (559)
Q Consensus 127 lg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P 179 (559)
.|+...|-+-...+|+..|..+.-...++.+...+|+|+.+..++..+-.+-.
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~ 354 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIG 354 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhc
Confidence 46666777777777777777777777778888888888888777766554433
No 330
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=83.59 E-value=7.4 Score=40.05 Aligned_cols=67 Identities=16% Similarity=0.061 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008613 68 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY 143 (559)
Q Consensus 68 ~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l 143 (559)
......+..+...+...++++.++..+++.+.++|.+.. +|..+-..|++.|+...||..|.+.-++
T Consensus 150 e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~---------~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 150 ELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEP---------AYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchH---------HHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 334777888999999999999999999999999998865 8999999999999999999999888654
No 331
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=83.50 E-value=1.4 Score=28.18 Aligned_cols=23 Identities=26% Similarity=0.117 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 008613 150 ALYRRGQAYKDIGRLEEAVSDLS 172 (559)
Q Consensus 150 al~~rG~A~~~lg~~eeAi~dle 172 (559)
+++.+|.+|...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45555556666666666555543
No 332
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.47 E-value=12 Score=34.93 Aligned_cols=82 Identities=9% Similarity=-0.072 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008613 116 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 195 (559)
Q Consensus 116 ~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l 195 (559)
.+..+..+.+...+++++.......--+-|+.+.....-|..+...|+|.+|+..|+....-.+..+-....+..+.+.+
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al 91 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK 91 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence 44455566666899999999998888899999999999999999999999999999999887777777777777777666
Q ss_pred Hh
Q 008613 196 MK 197 (559)
Q Consensus 196 ~~ 197 (559)
++
T Consensus 92 ~D 93 (153)
T TIGR02561 92 GD 93 (153)
T ss_pred CC
Confidence 54
No 333
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=83.31 E-value=13 Score=41.66 Aligned_cols=94 Identities=19% Similarity=0.088 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHH
Q 008613 88 SNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEA 167 (559)
Q Consensus 88 ~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeA 167 (559)
.-++..|...+.+++.++. ....++ ++..+..++....++-....++..+|++..++.+++.+....|....+
T Consensus 48 ~~~~~a~~~~~~~~~~~~~------llla~~-lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~ 120 (620)
T COG3914 48 ALAIYALLLGIAINDVNPE------LLLAAF-LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLA 120 (620)
T ss_pred hHHHHHHHccCccCCCCHH------HHHHHH-HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHH
Confidence 3367777777777777654 222333 788888889998999999999999999999999999999888887776
Q ss_pred HHHHHH-HHHhCCCCHHHHHHH
Q 008613 168 VSDLSN-AHEVSPDDGTIADVL 188 (559)
Q Consensus 168 i~dlek-Al~l~P~~~~a~~~L 188 (559)
+.++.. +....|++..+...+
T Consensus 121 ~~~~~~~a~~~~~~~~~~~~~~ 142 (620)
T COG3914 121 LADISEIAEWLSPDNAEFLGHL 142 (620)
T ss_pred HHHHHHHHHhcCcchHHHHhhH
Confidence 666655 889999987766666
No 334
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=83.18 E-value=26 Score=36.64 Aligned_cols=82 Identities=10% Similarity=-0.124 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH---HHcCC
Q 008613 87 FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAY---KDIGR 163 (559)
Q Consensus 87 y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~---~~lg~ 163 (559)
.+.-+..|.+||+.+|.+.. ++..+-.++.+.-+-++..+.+++++..+|++...|...-... ...-.
T Consensus 47 ~E~klsilerAL~~np~~~~---------L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~ 117 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSER---------LLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFT 117 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCc
Confidence 35567889999999886643 5555556667778889999999999999999876554443333 23345
Q ss_pred HHHHHHHHHHHHHh
Q 008613 164 LEEAVSDLSNAHEV 177 (559)
Q Consensus 164 ~eeAi~dlekAl~l 177 (559)
++.....|.+++..
T Consensus 118 v~~~~~~y~~~l~~ 131 (321)
T PF08424_consen 118 VSDVRDVYEKCLRA 131 (321)
T ss_pred HHHHHHHHHHHHHH
Confidence 77788888777764
No 335
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=83.14 E-value=4.1 Score=44.11 Aligned_cols=113 Identities=16% Similarity=0.146 Sum_probs=68.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008613 77 QGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQ 156 (559)
Q Consensus 77 ~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~ 156 (559)
+-..+.-.|+|..|++...- |++.....-.....-....+|..|-||+-+++|.+||+.+..+|-.--+.-..++.+..
T Consensus 128 LlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~~~ 206 (404)
T PF10255_consen 128 LLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQRSY 206 (404)
T ss_pred HHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Confidence 44456678999999887543 22221110001122245589999999999999999999999998432222112222222
Q ss_pred HHHH-cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHH
Q 008613 157 AYKD-IGRLEEAVSDLSNAHEVSPD--DGTIADVLRD 190 (559)
Q Consensus 157 A~~~-lg~~eeAi~dlekAl~l~P~--~~~a~~~L~~ 190 (559)
-|-. .+..|.....+--++.++|. +..+...+++
T Consensus 207 q~d~i~K~~eqMyaLlAic~~l~p~~lde~i~~~lke 243 (404)
T PF10255_consen 207 QYDQINKKNEQMYALLAICLSLCPQRLDESISSQLKE 243 (404)
T ss_pred hhhHHHhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 2222 35567777777778888896 4445444443
No 336
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=82.99 E-value=2.8 Score=33.27 Aligned_cols=41 Identities=22% Similarity=0.405 Sum_probs=30.4
Q ss_pred HHHHHHHHh-c--CCHHHHHHHHHHhCCCCCHHHHHHHHHHhcc
Q 008613 462 KQMFSSMVK-N--MSPEMMANMSEQFGIKLSREDTEKFQQTMSS 502 (559)
Q Consensus 462 ~~m~~~mmk-~--m~p~~~~~m~~~~g~~~~~~~a~~~~~~~~~ 502 (559)
|..+.+-+| | ++++|+..|..|+|.|.|..+-.++.++|++
T Consensus 19 r~~~~k~l~~NPpine~mir~M~~QMG~kpSekqi~Q~m~~mk~ 62 (64)
T PF03672_consen 19 RKYMEKQLKENPPINEKMIRAMMMQMGRKPSEKQIKQMMRSMKN 62 (64)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHh
Confidence 334444444 4 4569999999999999999988777777654
No 337
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=82.82 E-value=3.2 Score=45.81 Aligned_cols=74 Identities=19% Similarity=0.063 Sum_probs=65.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCC
Q 008613 128 KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDI---GRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH 201 (559)
Q Consensus 128 g~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~l---g~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~ 201 (559)
..+..+|.+|.+++...|.....|.+|+.++... |+.-.|+.|+..+++++|....++..|.++...+.+..++
T Consensus 388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~ea 464 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEA 464 (758)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHh
Confidence 4578899999999999999999999999999865 4566799999999999999999999999999888877653
No 338
>COG5346 Predicted membrane protein [Function unknown]
Probab=82.48 E-value=3.2 Score=36.97 Aligned_cols=59 Identities=20% Similarity=0.239 Sum_probs=36.0
Q ss_pred HHhccCCHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcC---chHHHHHHHHHHHHHHHHhcc
Q 008613 498 QTMSSLSLNDLDRMMLWADRVQRGVQGVKKTKNWLLGK---PGMILAICMLILAVILHRLGF 556 (559)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~l~~~~~ 556 (559)
++-.|+=|.+++|+|..|.+-|..-...+.----+..+ .+-+-.||.||.+|-|-|.+|
T Consensus 45 ~qYnsI~pnt~~rimaMAekEQahrH~~~~k~~~~q~r~~~~~~~tril~liFgi~LVvsi~ 106 (136)
T COG5346 45 SQYNSIYPNTLQRIMAMAEKEQAHRHAIDLKNLKIQRRGQLYAKLTRILLLIFGIFLVVSIF 106 (136)
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999999999998633332211112222 334455666666655555555
No 339
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.98 E-value=51 Score=31.85 Aligned_cols=101 Identities=13% Similarity=0.027 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCCHH
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVL-AYDAKNVK 149 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL-~ldP~~~k 149 (559)
.-.....+.....+|+...|+..|.++-...+ .|. ..+..+.+.-+.++...|.|++...-.+.+- .-+|-...
T Consensus 94 vLA~mr~at~~a~kgdta~AV~aFdeia~dt~-~P~----~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~s 168 (221)
T COG4649 94 VLARMRAATLLAQKGDTAAAVAAFDEIAADTS-IPQ----IGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHS 168 (221)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHhccCC-Ccc----hhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHH
Confidence 55566788889999999999999999765433 222 1223456666778888899998766554332 22344455
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008613 150 ALYRRGQAYKDIGRLEEAVSDLSNAHE 176 (559)
Q Consensus 150 al~~rG~A~~~lg~~eeAi~dlekAl~ 176 (559)
+.--+|.+-++.|+|..|..+|.....
T Consensus 169 ArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 169 AREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 666788899999999999999998766
No 340
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=81.90 E-value=16 Score=41.82 Aligned_cols=99 Identities=15% Similarity=0.090 Sum_probs=78.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC-------C----------chhhhhHHHHHHHHHHHHHHcCCHHHHHHH
Q 008613 74 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIH-------S----------SEGRTLLLACSLNSMSCYLKTKQYDECIKV 136 (559)
Q Consensus 74 lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~-------~----------~e~~~l~~~~~~nlA~~ylklg~y~eAi~~ 136 (559)
+.--|..+...+..++|.+++.++++...... . .....+...+++..+.|.+-.++|..+...
T Consensus 304 y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~ 383 (608)
T PF10345_consen 304 YFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQE 383 (608)
T ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 44456677888888899999999887665433 0 124566778888899999999999999998
Q ss_pred HHHHHHcC---CC------CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008613 137 GSEVLAYD---AK------NVKALYRRGQAYKDIGRLEEAVSDLS 172 (559)
Q Consensus 137 ~~~AL~ld---P~------~~kal~~rG~A~~~lg~~eeAi~dle 172 (559)
...+.... |. .+..+|-.|..+...|+.+.|...|.
T Consensus 384 l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 384 LEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 88777653 22 47789999999999999999999998
No 341
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=81.85 E-value=12 Score=37.59 Aligned_cols=83 Identities=14% Similarity=0.171 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--C----HHHHHHHHHHHHHc
Q 008613 88 SNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK--N----VKALYRRGQAYKDI 161 (559)
Q Consensus 88 ~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~--~----~kal~~rG~A~~~l 161 (559)
...|+++.+|+........ ......+...+|.-|++.|+|++|+..++.++...-. + ...+..+-.|+..+
T Consensus 155 ~~iI~lL~~A~~~f~~~~~---~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~ 231 (247)
T PF11817_consen 155 KLIIELLEKAYEQFKKYGQ---NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRL 231 (247)
T ss_pred HHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 3457777777776555433 4556667788899999999999999999988655322 1 45677788888888
Q ss_pred CCHHHHHHHHHH
Q 008613 162 GRLEEAVSDLSN 173 (559)
Q Consensus 162 g~~eeAi~dlek 173 (559)
|+.+..+...-+
T Consensus 232 ~~~~~~l~~~le 243 (247)
T PF11817_consen 232 GDVEDYLTTSLE 243 (247)
T ss_pred CCHHHHHHHHHH
Confidence 888777765433
No 342
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=81.69 E-value=18 Score=34.56 Aligned_cols=66 Identities=12% Similarity=0.072 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008613 113 LLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN---VKALYRRGQAYKDIGRLEEAVSDLSNAHEVS 178 (559)
Q Consensus 113 ~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~---~kal~~rG~A~~~lg~~eeAi~dlekAl~l~ 178 (559)
...++..+|..|.+.|++++|++.|.++.+..... ...+++.-.+....++|......+.++-.+-
T Consensus 35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~ 103 (177)
T PF10602_consen 35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI 103 (177)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 34588899999999999999999999998875433 4678888899999999999999999987763
No 343
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=81.61 E-value=4.6 Score=28.22 Aligned_cols=29 Identities=21% Similarity=0.236 Sum_probs=13.3
Q ss_pred HHHHHHHHHHcCCHHHHHHH--HHHHHHcCC
Q 008613 117 SLNSMSCYLKTKQYDECIKV--GSEVLAYDA 145 (559)
Q Consensus 117 ~~nlA~~ylklg~y~eAi~~--~~~AL~ldP 145 (559)
++.+|.++...|+|++|+.. |.-+..+++
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 34445555555555555555 224444444
No 344
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=80.00 E-value=5.2 Score=27.97 Aligned_cols=33 Identities=15% Similarity=0.213 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCCC
Q 008613 149 KALYRRGQAYKDIGRLEEAVSD--LSNAHEVSPDD 181 (559)
Q Consensus 149 kal~~rG~A~~~lg~~eeAi~d--lekAl~l~P~~ 181 (559)
+.++.+|..+...|++++|+.. |+-+..+++.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 5688899999999999999999 55888888764
No 345
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=79.54 E-value=16 Score=30.01 Aligned_cols=30 Identities=40% Similarity=0.398 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKN 100 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l 100 (559)
+..+..+|..+=+.|+|.+|+.+|.++|++
T Consensus 6 a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 6 AKEVLKRAVELDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 555666777777788888888888777764
No 346
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=78.65 E-value=35 Score=36.88 Aligned_cols=110 Identities=18% Similarity=0.080 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCC
Q 008613 70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLA----YDA 145 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~----ldP 145 (559)
.+..|+-....|-..++...--..+..-+....--.+. .-.+.+.+.+=.+|+.-+.|+.|-....++.- .+.
T Consensus 168 ~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~---e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snn 244 (493)
T KOG2581|consen 168 AAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDE---EGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNN 244 (493)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcc---hhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccH
Confidence 45556666666666666444433333333321111111 12334455566788888899999888777651 122
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008613 146 KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG 182 (559)
Q Consensus 146 ~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~ 182 (559)
.+++++|.+|.+..-..+|..|.+++..|+...|.+.
T Consensus 245 e~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 245 EWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 4578999999999999999999999999999999854
No 347
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=78.19 E-value=19 Score=29.56 Aligned_cols=24 Identities=8% Similarity=-0.119 Sum_probs=11.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 008613 117 SLNSMSCYLKTKQYDECIKVGSEV 140 (559)
Q Consensus 117 ~~nlA~~ylklg~y~eAi~~~~~A 140 (559)
+..+|.-+-+.|+|.+||.+|.++
T Consensus 9 ~a~~AVe~D~~gr~~eAi~~Y~~a 32 (75)
T cd02682 9 YAINAVKAEKEGNAEDAITNYKKA 32 (75)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 334444444555555555554433
No 348
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=76.84 E-value=62 Score=32.72 Aligned_cols=93 Identities=19% Similarity=0.066 Sum_probs=69.0
Q ss_pred HHHHHHHHHHc-----C--CHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHH
Q 008613 74 LKKQGNELYSE-----G--RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT----KQYDECIKVGSEVLA 142 (559)
Q Consensus 74 lk~~Gn~~~k~-----g--~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylkl----g~y~eAi~~~~~AL~ 142 (559)
...+|..|..- - ++..|+..|.++-... + ..+.++++.||... .++++|+..|.++.+
T Consensus 151 ~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~---------~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~ 219 (292)
T COG0790 151 MYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--N---------PDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAE 219 (292)
T ss_pred HHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--C---------HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 45555555543 1 2347888898888764 2 23888999999774 489999999999998
Q ss_pred cCCCCHHHHHHHHHHHHHcC---------------CHHHHHHHHHHHHHhCCC
Q 008613 143 YDAKNVKALYRRGQAYKDIG---------------RLEEAVSDLSNAHEVSPD 180 (559)
Q Consensus 143 ldP~~~kal~~rG~A~~~lg---------------~~eeAi~dlekAl~l~P~ 180 (559)
... ..++++++ ++..-| +...|..++.++....+.
T Consensus 220 ~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 220 QGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred CCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 876 88999999 666555 778888888888776544
No 349
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=76.23 E-value=2.2 Score=44.98 Aligned_cols=85 Identities=8% Similarity=-0.048 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 150 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka 150 (559)
....++.+.+.++.+.|..|+..-..+++.++... .+|+.++..|+.+.+|++|++++..+....|++...
T Consensus 275 ~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~t---------ka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i 345 (372)
T KOG0546|consen 275 FSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKT---------KAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAI 345 (372)
T ss_pred cccccchHHhcccccCCCcceeccccccccChhhC---------cHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHH
Confidence 33455577888888999999888888877544443 389999999999999999999999999999999776
Q ss_pred HHHHHHHHHHcCCH
Q 008613 151 LYRRGQAYKDIGRL 164 (559)
Q Consensus 151 l~~rG~A~~~lg~~ 164 (559)
...+..+.....++
T Consensus 346 ~~~~~~~~~~~~~~ 359 (372)
T KOG0546|consen 346 EEELENVRQKKKQY 359 (372)
T ss_pred HHHHHHhhhHHHHH
Confidence 55555544444433
No 350
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=76.21 E-value=6.5 Score=31.25 Aligned_cols=32 Identities=28% Similarity=0.282 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613 69 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKN 100 (559)
Q Consensus 69 ~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l 100 (559)
..+..+...|..+=+.|+|.+|+.+|.+++++
T Consensus 3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 3 DKAIELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34667778888889999999999999999875
No 351
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=75.95 E-value=3.8 Score=26.10 Aligned_cols=23 Identities=17% Similarity=0.115 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 008613 116 CSLNSMSCYLKTKQYDECIKVGS 138 (559)
Q Consensus 116 ~~~nlA~~ylklg~y~eAi~~~~ 138 (559)
+++++|.+|...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 67899999999999999998875
No 352
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=75.86 E-value=21 Score=29.72 Aligned_cols=60 Identities=12% Similarity=0.027 Sum_probs=45.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613 118 LNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK---ALYRRGQAYKDIGRLEEAVSDLSNAHEV 177 (559)
Q Consensus 118 ~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~k---al~~rG~A~~~lg~~eeAi~dlekAl~l 177 (559)
...|.=++...+.++||..++++|+..++... ++-.+..||...|+|++.++..-+=+.+
T Consensus 10 ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 10 IEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556778899999999999998887654 4555667888999999988776554443
No 353
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.67 E-value=1.4e+02 Score=36.14 Aligned_cols=58 Identities=14% Similarity=0.047 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613 115 ACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV 177 (559)
Q Consensus 115 ~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l 177 (559)
.+|..+|.+.+..+...+||+.|-+| +++..|...-.+....|.|++-+.++.-+-+.
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 48999999999999999999999655 67777888888889999999999999877664
No 354
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=74.11 E-value=30 Score=38.29 Aligned_cols=73 Identities=4% Similarity=-0.058 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCH
Q 008613 70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ-YDECIKVGSEVLAYDAKNV 148 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~-y~eAi~~~~~AL~ldP~~~ 148 (559)
..+.|...-...-+.+.|.+--..|.++|.+.|.+++ +|.-.|.-.+.-+. .+.|...+.++|+.+|+++
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~d---------LWI~aA~wefe~n~ni~saRalflrgLR~npdsp 174 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPD---------LWIYAAKWEFEINLNIESARALFLRGLRFNPDSP 174 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCch---------hHHhhhhhHHhhccchHHHHHHHHHHhhcCCCCh
Confidence 3455555555555666699999999999999999988 78777777777665 8999999999999999998
Q ss_pred HHH
Q 008613 149 KAL 151 (559)
Q Consensus 149 kal 151 (559)
+.|
T Consensus 175 ~Lw 177 (568)
T KOG2396|consen 175 KLW 177 (568)
T ss_pred HHH
Confidence 643
No 355
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=73.95 E-value=21 Score=32.27 Aligned_cols=110 Identities=15% Similarity=0.144 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCC---c---hhhhhHHHHHHHHHHHHHHcCCHHHHHHHHH----HHHH
Q 008613 73 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS---S---EGRTLLLACSLNSMSCYLKTKQYDECIKVGS----EVLA 142 (559)
Q Consensus 73 ~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~---~---e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~----~AL~ 142 (559)
.+...|+..++.+++-.+|-.|++|+.+..+... . +.-...+.-..|+|..+...|+.+=.+++.. +++.
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt 82 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT 82 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999988665421 1 2223345567789999999999988888775 4566
Q ss_pred cCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008613 143 YDAKNVKALYRRGQA-YKDIGRLEEAVSDLSNAHEVSPDDGTIADVLR 189 (559)
Q Consensus 143 ldP~~~kal~~rG~A-~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~ 189 (559)
+-|.-+.. ...+ ...+|--..|+-+| ++.+|+ +.+...+.
T Consensus 83 LiPQCp~~---~C~afi~sLGCCk~ALl~F---~KRHPN-P~iA~~vq 123 (140)
T PF10952_consen 83 LIPQCPNT---ECEAFIDSLGCCKKALLDF---MKRHPN-PEIARLVQ 123 (140)
T ss_pred hccCCCCc---chHHHHHhhhccHHHHHHH---HHhCCC-HHHHHHHH
Confidence 66764322 1222 23566666777666 456775 44444443
No 356
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=72.84 E-value=60 Score=34.93 Aligned_cols=66 Identities=12% Similarity=0.080 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHc
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYL--KTKQYDECIKVGSEVLAY 143 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~yl--klg~y~eAi~~~~~AL~l 143 (559)
......++..+|+.++|..|.+.|...+...+.... ...+..++.+|. ..-+|++|.+.++..+..
T Consensus 131 ~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~-------~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 131 GDREWRRAKELFNRYDYGAAARILEELLRRLPGREE-------YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhh-------HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 456677888999999999999999998875333211 235556655554 566899999988877653
No 357
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=72.51 E-value=25 Score=38.15 Aligned_cols=49 Identities=8% Similarity=-0.043 Sum_probs=38.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcC
Q 008613 152 YRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG 200 (559)
Q Consensus 152 ~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~ 200 (559)
-.+..||+.+++.+-|+....+.+.++|.+..-+-....+-+.|.++.+
T Consensus 232 tklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~e 280 (569)
T PF15015_consen 232 TKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSE 280 (569)
T ss_pred HHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999999986655555556666665544
No 358
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=72.28 E-value=53 Score=37.93 Aligned_cols=81 Identities=12% Similarity=0.231 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008613 70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK 149 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~k 149 (559)
...++++.|..+.....|.+|.++|.++-. .-|...||+.+.+|++-.... +--|++.+
T Consensus 795 ~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-----------------~e~~~ecly~le~f~~LE~la----~~Lpe~s~ 853 (1189)
T KOG2041|consen 795 KEDAFRNIGETFAEMMEWEEAAKYYSYCGD-----------------TENQIECLYRLELFGELEVLA----RTLPEDSE 853 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----------------hHhHHHHHHHHHhhhhHHHHH----HhcCcccc
Confidence 356677788888888888888888876532 236667777777776643332 33466666
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH
Q 008613 150 ALYRRGQAYKDIGRLEEAVSDL 171 (559)
Q Consensus 150 al~~rG~A~~~lg~~eeAi~dl 171 (559)
.+-.+|..+...|--++|+..|
T Consensus 854 llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 854 LLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred hHHHHHHHHHhhchHHHHHHHH
Confidence 6666666666666666666655
No 359
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=72.12 E-value=95 Score=31.14 Aligned_cols=63 Identities=6% Similarity=-0.028 Sum_probs=52.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008613 77 QGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV 148 (559)
Q Consensus 77 ~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ 148 (559)
....+++.+...+||.....-++-.|.+.. +...+=..|.-.|+|++|+.-|+-+-++.|++.
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkakPtda~---------~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAKPTDAG---------GRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCcccc---------chhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 345678889999999999999999888865 555556677788999999999999999999874
No 360
>PRK01844 hypothetical protein; Provisional
Probab=71.54 E-value=11 Score=30.55 Aligned_cols=40 Identities=20% Similarity=0.382 Sum_probs=29.5
Q ss_pred HHHHHHHHh-c--CCHHHHHHHHHHhCCCCCHHHHHHHHHHhc
Q 008613 462 KQMFSSMVK-N--MSPEMMANMSEQFGIKLSREDTEKFQQTMS 501 (559)
Q Consensus 462 ~~m~~~mmk-~--m~p~~~~~m~~~~g~~~~~~~a~~~~~~~~ 501 (559)
|+.+.+-+| | .+++|+..|..|+|.|.|..+-.++-++|+
T Consensus 26 rk~~~k~lk~NPpine~mir~Mm~QMGqkPSekki~Q~m~~mk 68 (72)
T PRK01844 26 RKYMMNYLQKNPPINEQMLKMMMMQMGQKPSQKKINQMMSAMN 68 (72)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 334444444 3 578999999999999999888777666663
No 361
>smart00727 STI1 Heat shock chaperonin-binding motif.
Probab=71.24 E-value=5.8 Score=28.13 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHH
Q 008613 353 RPDMLKTASDVMSKMSSEDLQKMFEM 378 (559)
Q Consensus 353 ~P~m~~~~~~mM~nm~pe~m~~m~~m 378 (559)
||.++.++++|++| |+.+..|++.
T Consensus 10 ~P~~~~~l~~~~~n--P~~~~~~~~~ 33 (41)
T smart00727 10 NPQVQSLLQDMQQN--PDMLAQMLQE 33 (41)
T ss_pred CHHHHHHHHHHHHC--HHHHHHHHHh
Confidence 89999999999999 9999988864
No 362
>PRK11619 lytic murein transglycosylase; Provisional
Probab=71.11 E-value=1.1e+02 Score=35.52 Aligned_cols=58 Identities=14% Similarity=0.008 Sum_probs=44.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008613 119 NSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHE 176 (559)
Q Consensus 119 nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~ 176 (559)
.+....+..++++.+...+...-...-...+.+|++|.++..+|+.++|...|+++..
T Consensus 317 ~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 317 RRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 3344555788998877777664433345678999999999999999999999999744
No 363
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=71.00 E-value=15 Score=29.57 Aligned_cols=32 Identities=34% Similarity=0.349 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 008613 70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNL 101 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~ 101 (559)
.+..+...|..+-..|+|++|+.+|..+++..
T Consensus 5 ~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l 36 (75)
T cd02656 5 QAKELIKQAVKEDEDGNYEEALELYKEALDYL 36 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 35566777888888899999999999998753
No 364
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=70.96 E-value=6.1 Score=42.79 Aligned_cols=61 Identities=18% Similarity=0.200 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH--------HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008613 116 CSLNSMSCYLKTKQYDECIKVGSEVL--------AYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHE 176 (559)
Q Consensus 116 ~~~nlA~~ylklg~y~eAi~~~~~AL--------~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~ 176 (559)
.+..+..+|.-+|+|..|++..+..- +.-+-++..+|..|.+|+-++||.+|++.|...|.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788889999999998765431 11233567899999999999999999999988765
No 365
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=70.90 E-value=12 Score=34.52 Aligned_cols=46 Identities=17% Similarity=0.221 Sum_probs=25.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 008613 118 LNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGR 163 (559)
Q Consensus 118 ~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~ 163 (559)
..++..++..|+|.-|+..++.++..+|++..+...++.+|..++.
T Consensus 74 l~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 74 LERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 3445555556666666666666666666666666666666555554
No 366
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=70.65 E-value=9.4 Score=31.42 Aligned_cols=31 Identities=26% Similarity=0.252 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613 70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKN 100 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l 100 (559)
.+..+..++..+=+.|+|.+|+.+|.+++++
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3666777888899999999999999999985
No 367
>PRK00523 hypothetical protein; Provisional
Probab=70.60 E-value=13 Score=30.12 Aligned_cols=40 Identities=25% Similarity=0.455 Sum_probs=29.8
Q ss_pred HHHHHHHHh-c--CCHHHHHHHHHHhCCCCCHHHHHHHHHHhc
Q 008613 462 KQMFSSMVK-N--MSPEMMANMSEQFGIKLSREDTEKFQQTMS 501 (559)
Q Consensus 462 ~~m~~~mmk-~--m~p~~~~~m~~~~g~~~~~~~a~~~~~~~~ 501 (559)
|+.+.+-+| | .+++|+..|..|+|.|.|..+-.++-++|+
T Consensus 27 rk~~~k~l~~NPpine~mir~M~~QMGqKPSekki~Q~m~~mk 69 (72)
T PRK00523 27 KKMFKKQIRENPPITENMIRAMYMQMGRKPSESQIKQVMRSVK 69 (72)
T ss_pred HHHHHHHHHHCcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 334444444 3 578999999999999999988777766664
No 368
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=70.46 E-value=35 Score=33.50 Aligned_cols=74 Identities=15% Similarity=0.209 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHcCC
Q 008613 88 SNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK----NVKALYRRGQAYKDIGR 163 (559)
Q Consensus 88 ~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~----~~kal~~rG~A~~~lg~ 163 (559)
.+|...|.++- -.|.... +.+.+.+|..|. ..+.++++..+.++|++... ++..+.-++.+|..+++
T Consensus 123 ~~A~~~fL~~E-~~~~l~t-------~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 123 QEALRRFLQLE-GTPELET-------AELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred HHHHHHHHHHc-CCCCCCC-------HHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 56666665532 2222222 347777877776 57889999999999988543 58899999999999999
Q ss_pred HHHHHHH
Q 008613 164 LEEAVSD 170 (559)
Q Consensus 164 ~eeAi~d 170 (559)
++.|.-+
T Consensus 194 ~e~AYiw 200 (203)
T PF11207_consen 194 YEQAYIW 200 (203)
T ss_pred hhhhhhh
Confidence 9988644
No 369
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=70.15 E-value=17 Score=29.32 Aligned_cols=33 Identities=27% Similarity=0.291 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 008613 69 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNL 101 (559)
Q Consensus 69 ~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~ 101 (559)
..+..+..+|..+-..|+|++|+.+|.++++..
T Consensus 6 ~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l 38 (77)
T smart00745 6 SKAKELISKALKADEAGDYEEALELYKKAIEYL 38 (77)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 346667778888888999999999999988753
No 370
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=69.64 E-value=55 Score=34.65 Aligned_cols=74 Identities=16% Similarity=0.091 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008613 116 CSLNSMSCYLKTKQYDECIKVGSEVLAY--DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLR 189 (559)
Q Consensus 116 ~~~nlA~~ylklg~y~eAi~~~~~AL~l--dP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~ 189 (559)
+-.|++.+.-+..=...++...+.+..- -..+-.++--||..+..+|+.+||...|.+++.+.++..+....+.
T Consensus 331 V~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~ 406 (415)
T COG4941 331 VTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQ 406 (415)
T ss_pred EeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 4568888877766677777766655543 2345677888999999999999999999999999988766544433
No 371
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=69.34 E-value=79 Score=36.80 Aligned_cols=76 Identities=14% Similarity=0.046 Sum_probs=42.4
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHH------HHHhcCC-CCCchhhhhHHHHHHHHHHHHHHcCCHHH
Q 008613 60 IDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLL------AKKNLQG-IHSSEGRTLLLACSLNSMSCYLKTKQYDE 132 (559)
Q Consensus 60 l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~k------AL~l~p~-~~~~e~~~l~~~~~~nlA~~ylklg~y~e 132 (559)
+-.++...+-..+.+-..|+.|-+..+|++|+++|.+ |+++..- .|. ....+--.-|.-+...|+|+.
T Consensus 650 il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~-----evv~lee~wg~hl~~~~q~da 724 (1636)
T KOG3616|consen 650 ILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPE-----EVVKLEEAWGDHLEQIGQLDA 724 (1636)
T ss_pred HHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcH-----HHhhHHHHHhHHHHHHHhHHH
Confidence 3334444444566677788888889999999998765 4443221 111 011122233444555666666
Q ss_pred HHHHHHHH
Q 008613 133 CIKVGSEV 140 (559)
Q Consensus 133 Ai~~~~~A 140 (559)
||.+|-++
T Consensus 725 ainhfiea 732 (1636)
T KOG3616|consen 725 AINHFIEA 732 (1636)
T ss_pred HHHHHHHh
Confidence 66665443
No 372
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=68.97 E-value=22 Score=35.45 Aligned_cols=68 Identities=21% Similarity=0.187 Sum_probs=59.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008613 122 SCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLR 189 (559)
Q Consensus 122 ~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~ 189 (559)
.-+++-+...++|.....-++-+|.+......+=+.|+-.|+|+.|..-++-+-.+.|++..-.+.++
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr 76 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYR 76 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHH
Confidence 34567788999999999999999999999999999999999999999999999999998855444333
No 373
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=68.94 E-value=15 Score=29.87 Aligned_cols=33 Identities=27% Similarity=0.279 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 008613 69 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNL 101 (559)
Q Consensus 69 ~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~ 101 (559)
..+..+..+|...-..|+|++|+.+|..++++.
T Consensus 4 ~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l 36 (75)
T cd02678 4 QKAIELVKKAIEEDNAGNYEEALRLYQHALEYF 36 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 346777888888999999999999999998753
No 374
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=68.60 E-value=8.9 Score=31.51 Aligned_cols=35 Identities=20% Similarity=0.154 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 008613 69 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQG 103 (559)
Q Consensus 69 ~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~ 103 (559)
..+..+..+|...=..|+|++|+.+|..+|+++-.
T Consensus 4 ~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 4 ERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 34667778888888999999999999999987544
No 375
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=68.26 E-value=18 Score=26.51 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=14.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 008613 152 YRRGQAYKDIGRLEEAVSDLSNAH 175 (559)
Q Consensus 152 ~~rG~A~~~lg~~eeAi~dlekAl 175 (559)
+.++.+|..+|+++.|...++..+
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHH
Confidence 445666666666666666666665
No 376
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=68.26 E-value=25 Score=32.42 Aligned_cols=55 Identities=22% Similarity=0.165 Sum_probs=44.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcC
Q 008613 146 KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG 200 (559)
Q Consensus 146 ~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~ 200 (559)
.-...+..++...+..|+|..|...+..++..+|+|..++.....+.+.++....
T Consensus 68 GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 68 GGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp TCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 3456677788888889999999999999999999999999999999999976554
No 377
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=67.29 E-value=23 Score=31.41 Aligned_cols=69 Identities=16% Similarity=0.206 Sum_probs=52.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCCHHHH
Q 008613 120 SMSCYLKTKQYDECIKVGSEVLAYDAKNV---KALYRRGQAYKDIGR-----------LEEAVSDLSNAHEVSPDDGTIA 185 (559)
Q Consensus 120 lA~~ylklg~y~eAi~~~~~AL~ldP~~~---kal~~rG~A~~~lg~-----------~eeAi~dlekAl~l~P~~~~a~ 185 (559)
+|.-++..|++-+|++..+..+...+++. -.+...|.++..+.. +-.++++|.++..+.|......
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 46778899999999999999998877765 566677888866643 3458999999999999874443
Q ss_pred HHH
Q 008613 186 DVL 188 (559)
Q Consensus 186 ~~L 188 (559)
..|
T Consensus 82 ~~l 84 (111)
T PF04781_consen 82 FEL 84 (111)
T ss_pred HHH
Confidence 333
No 378
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.07 E-value=33 Score=41.09 Aligned_cols=108 Identities=14% Similarity=0.108 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD------ 144 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ld------ 144 (559)
...+...|+.+|..|.|+.|.-+|...- -|..++..+..+|+|..|+...++|-...
T Consensus 1194 ~A~i~~vGdrcf~~~~y~aAkl~y~~vS-----------------N~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~Vc 1256 (1666)
T KOG0985|consen 1194 VANIQQVGDRCFEEKMYEAAKLLYSNVS-----------------NFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVC 1256 (1666)
T ss_pred chhHHHHhHHHhhhhhhHHHHHHHHHhh-----------------hHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHH
Confidence 3446678999999999999999997653 36788999999999999999888874221
Q ss_pred -----C--------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008613 145 -----A--------------KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 195 (559)
Q Consensus 145 -----P--------------~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l 195 (559)
- -++.-+-.+-.-|...|.|+|-+..++.+|.+...+-.....|+.+..+.
T Consensus 1257 faCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1257 FACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred HHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence 0 01223344555677889999999999999988877766666666665444
No 379
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=66.86 E-value=17 Score=29.69 Aligned_cols=33 Identities=24% Similarity=0.148 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 008613 69 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNL 101 (559)
Q Consensus 69 ~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~ 101 (559)
..+..+..+|...-..|+|++|+.+|..+|+++
T Consensus 4 ~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~ 36 (75)
T cd02684 4 EKAIALVVQAVKKDQRGDAAAALSLYCSALQYF 36 (75)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 346677788888899999999999999999764
No 380
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=66.79 E-value=25 Score=38.46 Aligned_cols=59 Identities=15% Similarity=0.146 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSE 139 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~ 139 (559)
.....+.+..+|.+|+|.++.-+-.-..++.| .+ .+|.-+|.|.+..++|++|..++..
T Consensus 462 ian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~---------~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 462 IANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SP---------QAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cH---------HHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 45566677789999999999998888888877 33 3888999999999999999987754
No 381
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=66.18 E-value=2.7e+02 Score=32.78 Aligned_cols=28 Identities=11% Similarity=0.130 Sum_probs=18.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 008613 77 QGNELYSEGRFSNALQKYLLAKKNLQGI 104 (559)
Q Consensus 77 ~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~ 104 (559)
.|..--.++.|+++-++|.-......+.
T Consensus 371 ~~rledir~emDd~~~~f~lL~n~vkdT 398 (1102)
T KOG1924|consen 371 SGRLEDIRAEMDDANEVFELLANTVKDT 398 (1102)
T ss_pred HhHHHhhhhhhccHHHHHHHHHHhhhhc
Confidence 3444445677888888888776665443
No 382
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=65.78 E-value=2.2e+02 Score=33.85 Aligned_cols=99 Identities=9% Similarity=-0.007 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CC
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD----AK 146 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ld----P~ 146 (559)
++..--.|.+...++++++|+++.+.++...|.... ...+.|+...+.++.-.|+|++|......+.+.. .-
T Consensus 458 ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~----~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~ 533 (894)
T COG2909 458 AEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY----RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVY 533 (894)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc----hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccH
Confidence 344445778888999999999999999998887643 2356689999999999999999999888887763 22
Q ss_pred --CHHHHHHHHHHHHHcCC--HHHHHHHHHH
Q 008613 147 --NVKALYRRGQAYKDIGR--LEEAVSDLSN 173 (559)
Q Consensus 147 --~~kal~~rG~A~~~lg~--~eeAi~dlek 173 (559)
...+.+.++.++...|+ +.+....|..
T Consensus 534 ~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~ 564 (894)
T COG2909 534 HLALWSLLQQSEILEAQGQVARAEQEKAFNL 564 (894)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 24566777888888883 4444444443
No 383
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=65.09 E-value=34 Score=39.02 Aligned_cols=52 Identities=17% Similarity=0.233 Sum_probs=36.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008613 122 SCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHE 176 (559)
Q Consensus 122 ~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~ 176 (559)
..|...++|.+|....++.-++. +.+|+..|+-+....+|+||.+.|.+|-+
T Consensus 781 qlHve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLAE~DrFeEAqkAfhkAGr 832 (1081)
T KOG1538|consen 781 QLHVETQRWDEAFALAEKHPEFK---DDVYMPYAQWLAENDRFEEAQKAFHKAGR 832 (1081)
T ss_pred hheeecccchHhHhhhhhCcccc---ccccchHHHHhhhhhhHHHHHHHHHHhcc
Confidence 34445566666666555443333 35788889999999999999999987743
No 384
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=64.79 E-value=1.3e+02 Score=34.09 Aligned_cols=119 Identities=8% Similarity=-0.108 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCH
Q 008613 70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD-AKNV 148 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ld-P~~~ 148 (559)
+...|...-..-...|+|+...-.|.+++--+-.. ...|.+-+......|+..-|-..+.++.++. |..+
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y---------~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~ 366 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALY---------DEFWIKYARWMESSGDVSLANNVLARACKIHVKKTP 366 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhh---------HHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCc
Confidence 46667777778889999999999999998764444 3488888888888899988888888887764 4556
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 008613 149 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 197 (559)
Q Consensus 149 kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~ 197 (559)
..+..-+..--..|++..|...|++...-.|+...+...-.....+.+.
T Consensus 367 ~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~ 415 (577)
T KOG1258|consen 367 IIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGN 415 (577)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcc
Confidence 6666666666778899999999999998888876554443344444433
No 385
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=64.65 E-value=49 Score=29.74 Aligned_cols=86 Identities=8% Similarity=-0.028 Sum_probs=62.4
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHc
Q 008613 84 EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLA--YDAKNVKALYRRGQAYKDI 161 (559)
Q Consensus 84 ~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~--ldP~~~kal~~rG~A~~~l 161 (559)
.+.-..-...+.+++.....++.+....-...+|...+.+. ..+.+.|..+.. +.-..+..|...|..+...
T Consensus 39 ~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~------~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~ 112 (126)
T PF08311_consen 39 GGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLS------SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKR 112 (126)
T ss_dssp CCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTB------SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHT
T ss_pred CCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHc------cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHc
Confidence 35556667788888888877766555555555666655432 377777776664 5567789999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 008613 162 GRLEEAVSDLSNAH 175 (559)
Q Consensus 162 g~~eeAi~dlekAl 175 (559)
|++++|...|++++
T Consensus 113 ~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 113 GNFKKADEIYQLGI 126 (126)
T ss_dssp T-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhC
Confidence 99999999999875
No 386
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=64.52 E-value=80 Score=38.13 Aligned_cols=98 Identities=19% Similarity=0.161 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---
Q 008613 73 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK--- 149 (559)
Q Consensus 73 ~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~k--- 149 (559)
.+.+++...-....|.+|+..|.+.- -.+.-|- -|...|.+|.++++|++-|+.|.-|++..|.++.
T Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (932)
T PRK13184 521 TLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPL---------EYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISR 590 (932)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCch---------HHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHH
Confidence 34444444444456888888887743 3344433 6889999999999999999999999999998864
Q ss_pred ----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008613 150 ----ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG 182 (559)
Q Consensus 150 ----al~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~ 182 (559)
..||+-.+.+.. ...|+...--++.+.|...
T Consensus 591 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 625 (932)
T PRK13184 591 LRDHLVYRLHESLYKH--RREALVFMLLALWIAPEKI 625 (932)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhCcccc
Confidence 455555554433 3456666666788888753
No 387
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=64.48 E-value=36 Score=41.64 Aligned_cols=111 Identities=10% Similarity=-0.031 Sum_probs=85.8
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---
Q 008613 67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY--- 143 (559)
Q Consensus 67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l--- 143 (559)
....+..++.++..+++.+++++|+..-.++.-+....... .+.-....|.|++...+..++...|+..+.+++.+
T Consensus 969 h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~-ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~L 1047 (1236)
T KOG1839|consen 969 HPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGK-DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLL 1047 (1236)
T ss_pred chhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccC-CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhcc
Confidence 45568899999999999999999999977776544332211 11223457889999999999999999999888865
Q ss_pred -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008613 144 -----DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS 178 (559)
Q Consensus 144 -----dP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~ 178 (559)
.|.-+-...+++..+..+++++-|+..++.|+.+.
T Consensus 1048 s~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1048 SSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred ccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 23334456788899999999999999999999864
No 388
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.36 E-value=88 Score=37.10 Aligned_cols=121 Identities=13% Similarity=0.168 Sum_probs=78.2
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC------CchhhhhHHHHHHHHHHHHHHc-------CCHHHH
Q 008613 67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIH------SSEGRTLLLACSLNSMSCYLKT-------KQYDEC 133 (559)
Q Consensus 67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~------~~e~~~l~~~~~~nlA~~ylkl-------g~y~eA 133 (559)
+........++|-.+...|+|.+|+++|+.+|-..|-.. ..+..++...|...+.-.-.++ ...+.+
T Consensus 987 ~l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~ 1066 (1202)
T KOG0292|consen 987 KLSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQ 1066 (1202)
T ss_pred cHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHH
Confidence 455567777899999999999999999999997665321 1234444444422222222111 233444
Q ss_pred --HHHHHHHHHcCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008613 134 --IKVGSEVLAYDAKNVK-ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADV 187 (559)
Q Consensus 134 --i~~~~~AL~ldP~~~k-al~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~ 187 (559)
+..|=.-++|.|-+-. ++..--.++++++++..|.....+.+++.|..+.+...
T Consensus 1067 ~ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~ 1123 (1202)
T KOG0292|consen 1067 LELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQA 1123 (1202)
T ss_pred HHHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHH
Confidence 2333333456665543 44444456789999999999999999999988766543
No 389
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=64.22 E-value=58 Score=25.66 Aligned_cols=24 Identities=13% Similarity=0.241 Sum_probs=13.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 008613 118 LNSMSCYLKTKQYDECIKVGSEVL 141 (559)
Q Consensus 118 ~nlA~~ylklg~y~eAi~~~~~AL 141 (559)
.+.|.-+-+.|+|++|+..|.+++
T Consensus 9 ~~~Av~~D~~g~~~~A~~~Y~~ai 32 (69)
T PF04212_consen 9 IKKAVEADEAGNYEEALELYKEAI 32 (69)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444455666666666665554
No 390
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=63.83 E-value=3.1e+02 Score=33.83 Aligned_cols=23 Identities=13% Similarity=0.172 Sum_probs=17.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 008613 119 NSMSCYLKTKQYDECIKVGSEVL 141 (559)
Q Consensus 119 nlA~~ylklg~y~eAi~~~~~AL 141 (559)
..|..|.+.|+.++|+..|..+.
T Consensus 957 ~Aal~Ye~~GklekAl~a~~~~~ 979 (1265)
T KOG1920|consen 957 EAALMYERCGKLEKALKAYKECG 979 (1265)
T ss_pred HHHHHHHHhccHHHHHHHHHHhc
Confidence 35778888889999888877654
No 391
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=63.48 E-value=42 Score=27.45 Aligned_cols=33 Identities=24% Similarity=0.230 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 008613 69 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNL 101 (559)
Q Consensus 69 ~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~ 101 (559)
..+..+..+|...-..|+|.+|+.+|..+|++.
T Consensus 4 ~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~ 36 (75)
T cd02677 4 EQAAELIRLALEKEEEGDYEAAFEFYRAGVDLL 36 (75)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 346667777788888899999999999998764
No 392
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=61.59 E-value=1.3e+02 Score=32.37 Aligned_cols=63 Identities=8% Similarity=0.037 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHH--HcCCHHHHHHHHHH
Q 008613 73 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYL--KTKQYDECIKVGSE 139 (559)
Q Consensus 73 ~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~yl--klg~y~eAi~~~~~ 139 (559)
....++..+|++++|..|...|..++....... ... ...+|.+++.||. ..-+|++|.+.+++
T Consensus 132 ~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~--~~~--~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 132 TEQGYARRAINAFDYLFAHARLETLLRRLLSAV--NHT--FYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhcccChh--hhh--HHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 344466789999999999999999997643311 112 2345666666665 46688999988873
No 393
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=61.29 E-value=8.7 Score=40.04 Aligned_cols=74 Identities=3% Similarity=-0.054 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008613 70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLN-SMSCYLKTKQYDECIKVGSEVLAYDAKNV 148 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~n-lA~~ylklg~y~eAi~~~~~AL~ldP~~~ 148 (559)
.+..|....+-..+.|-|.+--..|.+++...|.+.+ +|.- .+.-|...++++.|...+.++|+.+|+++
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvd---------lWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p 176 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVD---------LWIYCCAFELFEIANIESSRAMFLKGLRMNSRSP 176 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCce---------eeeeeccchhhhhccHHHHHHHHHhhhccCCCCc
Confidence 4666777777778888899999999999999998876 5544 34556677899999999999999999998
Q ss_pred HHHH
Q 008613 149 KALY 152 (559)
Q Consensus 149 kal~ 152 (559)
+.|+
T Consensus 177 ~iw~ 180 (435)
T COG5191 177 RIWI 180 (435)
T ss_pred hHHH
Confidence 7654
No 394
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=60.86 E-value=1.3e+02 Score=30.42 Aligned_cols=72 Identities=17% Similarity=0.264 Sum_probs=40.8
Q ss_pred HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----h--------cCCCCCchhhhhHHHHHHHH-HHHHHHcCCHH
Q 008613 66 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKK-----N--------LQGIHSSEGRTLLLACSLNS-MSCYLKTKQYD 131 (559)
Q Consensus 66 ~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~-----l--------~p~~~~~e~~~l~~~~~~nl-A~~ylklg~y~ 131 (559)
+....++.+...|..|++.++|.+|..+|-.+-. . ....+. -..++.-| -..|+.+++..
T Consensus 85 ~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~------e~dlfi~RaVL~yL~l~n~~ 158 (260)
T PF04190_consen 85 YKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPS------EADLFIARAVLQYLCLGNLR 158 (260)
T ss_dssp -TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--------HHHHHHHHHHHHHHTTBHH
T ss_pred CCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCc------chhHHHHHHHHHHHHhcCHH
Confidence 3444578888899999999999999887522100 0 011111 01233334 46677889999
Q ss_pred HHHHHHHHHHHc
Q 008613 132 ECIKVGSEVLAY 143 (559)
Q Consensus 132 eAi~~~~~AL~l 143 (559)
.|...++.-++.
T Consensus 159 ~A~~~~~~f~~~ 170 (260)
T PF04190_consen 159 DANELFDTFTSK 170 (260)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888766555443
No 395
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.24 E-value=66 Score=35.99 Aligned_cols=81 Identities=12% Similarity=-0.013 Sum_probs=60.9
Q ss_pred HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008613 66 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA 145 (559)
Q Consensus 66 ~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP 145 (559)
..++.+--+...+..+...|+-+.|+..+...+. .+.+.+...|++.++.|+.-+.+|..|-.++....+++
T Consensus 262 ~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~-------~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~des- 333 (546)
T KOG3783|consen 262 RYPKGALWLLMEARILSIKGNSEAAIDMESLSIP-------IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDES- 333 (546)
T ss_pred hCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh-
Confidence 3444566677788888888887777777777765 34567788899999999999999999999998887654
Q ss_pred CCHHHHHHH
Q 008613 146 KNVKALYRR 154 (559)
Q Consensus 146 ~~~kal~~r 154 (559)
++.+++|.-
T Consensus 334 dWS~a~Y~Y 342 (546)
T KOG3783|consen 334 DWSHAFYTY 342 (546)
T ss_pred hhhHHHHHH
Confidence 455555543
No 396
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=60.22 E-value=46 Score=31.83 Aligned_cols=51 Identities=24% Similarity=0.255 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008613 130 YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181 (559)
Q Consensus 130 y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~ 181 (559)
.+..++..++.++..| ++..|.+++.++..+|+.++|...++++..+.|.+
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 4455566677777777 78889999999999999999999999999999943
No 397
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=60.15 E-value=15 Score=26.91 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=23.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008613 118 LNSMSCYLKTKQYDECIKVGSEVLAY 143 (559)
Q Consensus 118 ~nlA~~ylklg~y~eAi~~~~~AL~l 143 (559)
+++|.+|.++|+++.|....++++.-
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 58999999999999999999999953
No 398
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=59.91 E-value=2.4e+02 Score=29.96 Aligned_cols=105 Identities=10% Similarity=0.095 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008613 69 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV 148 (559)
Q Consensus 69 ~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ 148 (559)
...++++.++.-|++.|+-+.|++.|.+..+..-.... +--...+..++|..|....-..+-|+.....++...++-
T Consensus 102 ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~---kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWe 178 (393)
T KOG0687|consen 102 EVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGH---KIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWE 178 (393)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhccc---chhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChh
Confidence 35788999999999999999999998877754222111 111234556788888887777788888888887766653
Q ss_pred H---HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008613 149 K---ALYRRGQAYKDIGRLEEAVSDLSNAHE 176 (559)
Q Consensus 149 k---al~~rG~A~~~lg~~eeAi~dlekAl~ 176 (559)
+ .--..|.-.....+|.+|...|-.++.
T Consensus 179 RrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 179 RRNRLKVYQGLYCMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred hhhhHHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 2 111223344455666666666655544
No 399
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=59.40 E-value=26 Score=22.23 Aligned_cols=29 Identities=21% Similarity=0.125 Sum_probs=18.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008613 162 GRLEEAVSDLSNAHEVSPDDGTIADVLRD 190 (559)
Q Consensus 162 g~~eeAi~dlekAl~l~P~~~~a~~~L~~ 190 (559)
|+++.+...|++++...|.+..+|.....
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 35666777777777777776666655443
No 400
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=59.16 E-value=72 Score=26.18 Aligned_cols=22 Identities=9% Similarity=0.054 Sum_probs=10.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 008613 120 SMSCYLKTKQYDECIKVGSEVL 141 (559)
Q Consensus 120 lA~~ylklg~y~eAi~~~~~AL 141 (559)
.|.-+-+.|+|++|+.+|..+|
T Consensus 12 ~Ave~D~~g~y~eAl~~Y~~ai 33 (77)
T cd02683 12 RAVELDQEGRFQEALVCYQEGI 33 (77)
T ss_pred HHHHHHHhccHHHHHHHHHHHH
Confidence 3333344455555555554444
No 401
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=58.70 E-value=27 Score=36.23 Aligned_cols=59 Identities=15% Similarity=-0.027 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008613 73 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEV 140 (559)
Q Consensus 73 ~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~A 140 (559)
.+...+..|...|.|.+|+++.++++.++|-... .+.-+-+.|..+|+--.++..|++-
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~---------~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQ---------DNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhH---------HHHHHHHHHHHhccchhhhhHHHHH
Confidence 3445667789999999999999999999777654 7888889999999988888777654
No 402
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.69 E-value=56 Score=38.41 Aligned_cols=66 Identities=9% Similarity=-0.009 Sum_probs=45.1
Q ss_pred cCCCHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCHHHHHHHHHHHHHHH---hhhhhHHHHHHH
Q 008613 455 QMNDPAMKQMFSSMVKNMSPEMMANMSEQFGIKLSREDTEKFQQTMSSLSLNDLDRMMLWADRVQ---RGVQGVKKTKNW 531 (559)
Q Consensus 455 ~m~~p~~~~m~~~mmk~m~p~~~~~m~~~~g~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 531 (559)
.+++-.-++-+...+++-+||..-.+.+-.|-- +|+...-++++--+.. .-.+...++.+.
T Consensus 702 ~~k~k~~~dl~~~~~q~~d~E~~it~~~~~g~~----------------~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~ 765 (933)
T KOG2114|consen 702 YEKLKEGQDLMLYFQQISDPETVITLCERLGKE----------------DPSLWLHALKYFVSEESIEDCYEIVYKVLEA 765 (933)
T ss_pred HhhccchHHHHHHHHHhhChHHHHHHHHHhCcc----------------ChHHHHHHHHHHhhhcchhhHHHHHHHHHHH
Confidence 566667788889999999999999999987754 5555555665543332 224456666666
Q ss_pred HhcCc
Q 008613 532 LLGKP 536 (559)
Q Consensus 532 ~~~~~ 536 (559)
+....
T Consensus 766 I~~~~ 770 (933)
T KOG2114|consen 766 IEMQE 770 (933)
T ss_pred HHhcc
Confidence 65543
No 403
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=58.59 E-value=1.4e+02 Score=32.54 Aligned_cols=103 Identities=13% Similarity=0.074 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCH--------------HHHHHHH
Q 008613 72 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY--------------DECIKVG 137 (559)
Q Consensus 72 ~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y--------------~eAi~~~ 137 (559)
...+.+|+.+|--++|+-|+..|.-+..-...+. ...+.+-++--.+.|++..+.. +.|+..|
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dk---aw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y 285 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDK---AWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTY 285 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhch---hHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHH
Confidence 3466799999999999999999999887554442 2334445555566777666632 3344444
Q ss_pred HHHH----HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613 138 SEVL----AYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV 177 (559)
Q Consensus 138 ~~AL----~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l 177 (559)
.++- ....-..++....+..+...+.|.+|...+-+....
T Consensus 286 ~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 286 LKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred HhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 4421 111123567777788888999998888887777655
No 404
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=58.15 E-value=39 Score=36.86 Aligned_cols=107 Identities=17% Similarity=0.186 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhh--hhHHHHHHHHHHHHHHcCCHH---HH---HHHHHHHHH
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGR--TLLLACSLNSMSCYLKTKQYD---EC---IKVGSEVLA 142 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~--~l~~~~~~nlA~~ylklg~y~---eA---i~~~~~AL~ 142 (559)
+-.+..+|..+.+++.|.+|+.++..|-+++..+...-.. +-++.+-.-.-.||+.+++.. +| +..|++.+.
T Consensus 163 glg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~ 242 (568)
T KOG2561|consen 163 GLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFE 242 (568)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhh
Confidence 5567889999999999999999887776665443221000 001122223456777766432 22 222222222
Q ss_pred ------------cC-CCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613 143 ------------YD-AKNV------KALYRRGQAYKDIGRLEEAVSDLSNAHEV 177 (559)
Q Consensus 143 ------------ld-P~~~------kal~~rG~A~~~lg~~eeAi~dlekAl~l 177 (559)
+. +..+ +.++.-|...+..|+-++|..+|+.+...
T Consensus 243 ~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~ 296 (568)
T KOG2561|consen 243 RSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAK 296 (568)
T ss_pred hhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 11 2222 34455689999999999999999988663
No 405
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=57.85 E-value=1.4e+02 Score=31.73 Aligned_cols=31 Identities=13% Similarity=0.105 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008613 115 ACSLNSMSCYLKTKQYDECIKVGSEVLAYDA 145 (559)
Q Consensus 115 ~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP 145 (559)
.+-.+++.|..++|+..+|++.++...+-.|
T Consensus 276 YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 276 YIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 3344445555555555555555555544444
No 406
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=57.59 E-value=59 Score=34.46 Aligned_cols=115 Identities=15% Similarity=0.264 Sum_probs=77.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHcCCCCHHHHHHH
Q 008613 77 QGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE--CIKVGSEVLAYDAKNVKALYRR 154 (559)
Q Consensus 77 ~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~e--Ai~~~~~AL~ldP~~~kal~~r 154 (559)
-|..+...++|..|..+|=+|++-....... ...+. .+-..-.|-.-++..++ ++-....+++++.....+..-.
T Consensus 215 SGIlha~ekDykTafSYFyEAfEgf~s~~~~-v~A~~--sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~Amkav 291 (411)
T KOG1463|consen 215 SGILHAAEKDYKTAFSYFYEAFEGFDSLDDD-VKALT--SLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAV 291 (411)
T ss_pred ccceeecccccchHHHHHHHHHccccccCCc-HHHHH--HHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHH
Confidence 3445667789999999999998765443321 12222 22222334444555555 4445567788888899999999
Q ss_pred HHHHH--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 008613 155 GQAYK--DIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 197 (559)
Q Consensus 155 G~A~~--~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~ 197 (559)
+.++. .+.+|+.|+.+|+.=+. .|+.++..+..++..+-+
T Consensus 292 AeA~~nRSLkdF~~AL~~yk~eL~---~D~ivr~Hl~~Lyd~lLE 333 (411)
T KOG1463|consen 292 AEAFGNRSLKDFEKALADYKKELA---EDPIVRSHLQSLYDNLLE 333 (411)
T ss_pred HHHhcCCcHHHHHHHHHHhHHHHh---cChHHHHHHHHHHHHHHH
Confidence 99984 67889999999997776 456788888887766643
No 407
>PF01004 Flavi_M: Flavivirus envelope glycoprotein M; InterPro: IPR000069 Flaviviruses are small enveloped viruses with virions comprised of three proteins called C, M and E [, , ]. The envelope glycoprotein M is made as a precursor, called prM. The precursor portion of the protein is the signal peptide for the proteins entry into the membrane. prM is cleaved to form M in a late-stage cleavage event. Associated with this cleavage is a change in the infectivity and fusion activity of the virus.; GO: 0019058 viral infectious cycle, 0019028 viral capsid
Probab=57.42 E-value=20 Score=29.45 Aligned_cols=25 Identities=28% Similarity=0.635 Sum_probs=19.0
Q ss_pred hhhhHHHHHHHHhcCchHHHHHHHH
Q 008613 521 GVQGVKKTKNWLLGKPGMILAICML 545 (559)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (559)
+.+...|+=+|+++||++.++++++
T Consensus 25 ~~~hl~rvE~WilrNp~~al~a~~l 49 (75)
T PF01004_consen 25 AWKHLTRVESWILRNPGYALAAVAL 49 (75)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHH
Confidence 3456667999999999887776665
No 408
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=56.99 E-value=1.3e+02 Score=31.81 Aligned_cols=88 Identities=16% Similarity=0.103 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHhcCCCC--CchhhhhHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 008613 87 FSNALQKYLLAKKNLQGIH--SSEGRTLLLACSLNSMSCYLKT---KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDI 161 (559)
Q Consensus 87 y~eAi~~Y~kAL~l~p~~~--~~e~~~l~~~~~~nlA~~ylkl---g~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~l 161 (559)
+.+.+..|...+.+....+ .....++...+-..+-..|.+. ...-+|+-..+.++..+|.|......+-..|..+
T Consensus 151 ~~~~~~~y~~~l~~~~~l~te~~~~d~~~lla~~~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~L 230 (365)
T PF09797_consen 151 AQELLKLYQESLSLGKDLKTESQPADELALLAAHSLLDLYSKTKDSEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLL 230 (365)
T ss_pred HHHHHHHHHhhCccccccccccCchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc
Confidence 3455667777777653211 1112233322222222222333 3466788888999999999999999999999999
Q ss_pred CCHHHHHHHHHHH
Q 008613 162 GRLEEAVSDLSNA 174 (559)
Q Consensus 162 g~~eeAi~dlekA 174 (559)
|-...|...|+..
T Consensus 231 G~~~~A~~~~~~L 243 (365)
T PF09797_consen 231 GAGSLALEHYESL 243 (365)
T ss_pred CCHHHHHHHHHhc
Confidence 9999999999643
No 409
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=56.45 E-value=40 Score=41.27 Aligned_cols=125 Identities=15% Similarity=0.008 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----
Q 008613 69 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD---- 144 (559)
Q Consensus 69 ~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ld---- 144 (559)
..++...+.|......+.+.+|.+ ..+++.+....- ...+.-...||..++..|.+++++++|+..+.+++-+.
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~-~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~ 1007 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVM-GVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVL 1007 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhh-hhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhc
Confidence 356777888888888899998888 555555433210 01123356799999999999999999999998887542
Q ss_pred ----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHH
Q 008613 145 ----AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV--------SPDDGTIADVLRDAKEIL 195 (559)
Q Consensus 145 ----P~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l--------~P~~~~a~~~L~~a~~~l 195 (559)
|+....|-+++...+..++...|+..+.+++.+ +|.-..+...++.+...+
T Consensus 1008 g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v 1070 (1236)
T KOG1839|consen 1008 GKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGV 1070 (1236)
T ss_pred cCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhH
Confidence 445678999998889999999999999988875 344334444455443333
No 410
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=56.32 E-value=1.5e+02 Score=32.93 Aligned_cols=25 Identities=28% Similarity=0.553 Sum_probs=19.7
Q ss_pred HHhcCCCHHHHHHHHHHHhcCCHHHHHH
Q 008613 452 MRNQMNDPAMKQMFSSMVKNMSPEMMAN 479 (559)
Q Consensus 452 m~~~m~~p~~~~m~~~mmk~m~p~~~~~ 479 (559)
|.++.+ |.+|.|+.++-.| |...+.
T Consensus 347 ~~~l~s-~~~~~m~~~~s~~--P~~a~~ 371 (493)
T KOG0010|consen 347 LQQLLS-PYIRSMFQSASQN--PLQAAQ 371 (493)
T ss_pred hhhccc-hhhHHHHhhhccC--chhhhc
Confidence 566666 8899999998888 877766
No 411
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=56.28 E-value=2.4e+02 Score=30.83 Aligned_cols=110 Identities=15% Similarity=0.119 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008613 69 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV 148 (559)
Q Consensus 69 ~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ 148 (559)
..+..++-.|....-+.+|..|.+++..|+...|.+.. -.+.-.+......+-+-+|++.+-.-++...++ ...
T Consensus 245 e~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~a---lGf~q~v~k~~ivv~ll~geiPers~F~Qp~~~---ksL 318 (493)
T KOG2581|consen 245 EWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAA---LGFRQQVNKLMIVVELLLGEIPERSVFRQPGMR---KSL 318 (493)
T ss_pred HHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhh---hhHHHHHHHHHHHHHHHcCCCcchhhhcCccHH---HHH
Confidence 46777888888888888888888888888888776432 111111211122223335555544333322221 122
Q ss_pred HHHHHHHHHH--HHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008613 149 KALYRRGQAY--KDIGRLEEAVSDLSNAHEVSPDDGTI 184 (559)
Q Consensus 149 kal~~rG~A~--~~lg~~eeAi~dlekAl~l~P~~~~a 184 (559)
..|+.+..+. ..+.+|.+-+.-|..-+..+-.+..+
T Consensus 319 ~~Yf~Lt~AVr~gdlkkF~~~leq~k~~f~~D~ty~Li 356 (493)
T KOG2581|consen 319 RPYFKLTQAVRLGDLKKFNETLEQFKDKFQADGTYTLI 356 (493)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhCCcchHH
Confidence 3455554443 46778888888888777777665443
No 412
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.38 E-value=1.3e+02 Score=34.18 Aligned_cols=103 Identities=9% Similarity=0.017 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-----C-----------CCchhhhhHHHHHHHHHHHHHHcCCHHHHH
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQG-----I-----------HSSEGRTLLLACSLNSMSCYLKTKQYDECI 134 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~-----~-----------~~~e~~~l~~~~~~nlA~~ylklg~y~eAi 134 (559)
+..+...+..+-.+|+.+-|.++..++|=.... . ...+.+.++ .|++.--..+.+.|.|.-|.
T Consensus 284 vdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~Fy-L~l~r~m~~l~~RGC~rTA~ 362 (665)
T KOG2422|consen 284 VDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFY-LALFRYMQSLAQRGCWRTAL 362 (665)
T ss_pred hhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHH-HHHHHHHHHHHhcCChHHHH
Confidence 777777888888888887777777666633221 1 011233333 34444455666789999999
Q ss_pred HHHHHHHHcCCC-CHHHHHHHHHHH-HHcCCHHHHHHHHHHH
Q 008613 135 KVGSEVLAYDAK-NVKALYRRGQAY-KDIGRLEEAVSDLSNA 174 (559)
Q Consensus 135 ~~~~~AL~ldP~-~~kal~~rG~A~-~~lg~~eeAi~dlekA 174 (559)
+.|.-.+.++|. ++-+...+-..| +...+|.--+..++..
T Consensus 363 E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 363 EWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 999999999998 765443333333 3444555555444433
No 413
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=54.86 E-value=21 Score=29.31 Aligned_cols=23 Identities=13% Similarity=-0.000 Sum_probs=10.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 008613 119 NSMSCYLKTKQYDECIKVGSEVL 141 (559)
Q Consensus 119 nlA~~ylklg~y~eAi~~~~~AL 141 (559)
.+|.-+-+.|+|++|+.+|..+|
T Consensus 11 ~~Ave~D~~g~y~eA~~~Y~~ai 33 (76)
T cd02681 11 RLAVQRDQEGRYSEAVFYYKEAA 33 (76)
T ss_pred HHHHHHHHccCHHHHHHHHHHHH
Confidence 33444444444444444444443
No 414
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=54.85 E-value=91 Score=28.87 Aligned_cols=61 Identities=26% Similarity=0.227 Sum_probs=39.4
Q ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613 117 SLNSMSCYL-KTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV 177 (559)
Q Consensus 117 ~~nlA~~yl-klg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l 177 (559)
|+.+|.-++ +.++-+.--+.+..+.+-+-.++..++.+|.||..+|+..+|-..+++|.+.
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 445554333 4445455445556666555668999999999999999999999999999874
No 415
>PF11351 DUF3154: Protein of unknown function (DUF3154); InterPro: IPR021497 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=54.33 E-value=30 Score=31.09 Aligned_cols=58 Identities=12% Similarity=0.181 Sum_probs=37.1
Q ss_pred CCHHHHHHHHHHhccCCHHH-HHHHHH----HHHHHHhhhhhHHHHHHHHhc-CchHHHHHHHHHHH
Q 008613 488 LSREDTEKFQQTMSSLSLND-LDRMML----WADRVQRGVQGVKKTKNWLLG-KPGMILAICMLILA 548 (559)
Q Consensus 488 ~~~~~a~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a 548 (559)
-|+|+..+++..+..+.-++ ++.+-. |.+++|.++...-. |+.| ||.+++..+.+++.
T Consensus 12 ~~~e~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~eln~~~a---fv~rwRP~~~~~~~~~~~~ 75 (123)
T PF11351_consen 12 PDPEERAQAKAELQQAALEQFAAEFEAARRARFDRMQAELNRADA---FVRRWRPALGWVCLLLFAW 75 (123)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCcc---cccccccHHHHHHHHHHHH
Confidence 46777777777777766664 233333 67777776655444 8877 78777776655554
No 416
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.25 E-value=3e+02 Score=30.14 Aligned_cols=47 Identities=17% Similarity=0.212 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008613 52 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAK 98 (559)
Q Consensus 52 e~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL 98 (559)
++..+.+.+.++++.-...++.++...+.+++.|+-.-|+.+.++-.
T Consensus 237 ~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk 283 (439)
T KOG2911|consen 237 DLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARK 283 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 45566688888888888999999999999999999999998655433
No 417
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=53.41 E-value=85 Score=24.65 Aligned_cols=60 Identities=20% Similarity=0.106 Sum_probs=43.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 008613 75 KKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVG 137 (559)
Q Consensus 75 k~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~ 137 (559)
...|..++..|+|-+|=+.+.......+.. +..-+...+....|..+.+.|+...|...+
T Consensus 3 ~~~~~~l~n~g~f~EaHEvlE~~W~~~~~~---~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 3 LEEGIELFNAGDFFEAHEVLEELWKAAPGP---ERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCCT-CC---HHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHhHHHHHHHHHHCCcc---hHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 457888999999999999999988644333 445555556666677778888988887653
No 418
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=52.06 E-value=68 Score=25.14 Aligned_cols=54 Identities=19% Similarity=0.372 Sum_probs=45.1
Q ss_pred HHhcCCCHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCHHHHHHH
Q 008613 452 MRNQMNDPAMKQMFSSMVKNMSPEMMANMSEQFGIKLSREDTEKFQQTMSSLSLNDLDRM 511 (559)
Q Consensus 452 m~~~m~~p~~~~m~~~mmk~m~p~~~~~m~~~~g~~~~~~~a~~~~~~~~~~~~~~~~~~ 511 (559)
+..+-+||..++-+.. --+|+..-.+....|...|.++-.++ -..||++.|+..
T Consensus 8 l~~~~~d~~L~~~l~~---~~~~e~~~~lA~~~Gf~ft~~el~~~---~~elsd~eL~~v 61 (64)
T TIGR03798 8 LEKVKTDPDLREKLKA---AEDPEDRVAIAKEAGFEFTGEDLKEA---GEELSDEELEAV 61 (64)
T ss_pred HHHHHcCHHHHHHHHH---cCCHHHHHHHHHHcCCCCCHHHHHHH---HhhCCHHHHHhh
Confidence 4556789999987766 46699999999999999999998874 679999998764
No 419
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=51.72 E-value=1e+02 Score=24.69 Aligned_cols=21 Identities=10% Similarity=0.167 Sum_probs=10.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 008613 121 MSCYLKTKQYDECIKVGSEVL 141 (559)
Q Consensus 121 A~~ylklg~y~eAi~~~~~AL 141 (559)
|..+-+.|+|++|+..|..++
T Consensus 15 Av~~d~~g~~~eAl~~Y~~a~ 35 (77)
T smart00745 15 ALKADEAGDYEEALELYKKAI 35 (77)
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 333334455555555554444
No 420
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.93 E-value=41 Score=29.93 Aligned_cols=35 Identities=26% Similarity=0.423 Sum_probs=14.5
Q ss_pred HHHHHhhhhhHHHHHHHHhcCchHHHHHHHHHHHH
Q 008613 515 ADRVQRGVQGVKKTKNWLLGKPGMILAICMLILAV 549 (559)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 549 (559)
++...+.....||-+=|-.=+-..+++++++|+.+
T Consensus 73 as~F~~~A~klkrk~wWkn~Km~~il~~v~~i~l~ 107 (116)
T KOG0860|consen 73 ASQFEKTAVKLKRKMWWKNCKMRIILGLVIIILLV 107 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444433433444444444443
No 421
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.78 E-value=1.1e+02 Score=31.69 Aligned_cols=106 Identities=15% Similarity=0.137 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------c
Q 008613 70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLA------Y 143 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~------l 143 (559)
..++++..-...|+.++|.+-.+.|.+.|.+...... +.+...+..+.-..---.++.+--..+|+..|+ .
T Consensus 64 GFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT---rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKN 140 (440)
T KOG1464|consen 64 GFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT---RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKN 140 (440)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh---ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhc
Confidence 3667888888999999999999999999876543211 011111111111111111222222233333332 1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008613 144 DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS 178 (559)
Q Consensus 144 dP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~ 178 (559)
+.-+.+.-..+|..|+..++|..-.+.++....-+
T Consensus 141 eRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SC 175 (440)
T KOG1464|consen 141 ERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSC 175 (440)
T ss_pred ceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHh
Confidence 22244566678999998888877666666555544
No 422
>PRK10132 hypothetical protein; Provisional
Probab=50.23 E-value=85 Score=27.65 Aligned_cols=65 Identities=12% Similarity=0.147 Sum_probs=42.1
Q ss_pred CHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCchHHHHHHHHHHHHHHHHh
Q 008613 489 SREDTEKFQQTMSSLSLNDLDRMMLWADRVQRGVQGVKKTKNWLLGKPGMILAICMLILAVILHRL 554 (559)
Q Consensus 489 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~ 554 (559)
+.++++.+.....+.=...-+++-.+.+..++.-+.+..|..|+.-+|+-.++|... |-|||.+|
T Consensus 39 ~~~~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~~a~~~~~~~V~~~Pw~svgiaag-vG~llG~L 103 (108)
T PRK10132 39 AKGEAEAARRKAQALLKETRARMHGRTRVQQAARDAVGCADTFVRERPWCSVGTAAA-VGIFIGAL 103 (108)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH-HHHHHHHH
Confidence 556666666665554444445555555545556677788999999999988777655 44454444
No 423
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=50.21 E-value=50 Score=36.14 Aligned_cols=124 Identities=20% Similarity=0.224 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHH--------------------HHHHHcCCH
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSM--------------------SCYLKTKQY 130 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA--------------------~~ylklg~y 130 (559)
....+..|...+..++|.+++.++.+||+..-..-+. .+.|..+.. ..+-..=+.
T Consensus 31 ~~~ay~~gl~~y~~~~w~~~v~~le~ALr~~~~~~~~-----~~~Cr~~C~g~~~~~e~~~~~~s~~~~~~a~fg~~le~ 105 (471)
T KOG4459|consen 31 HELAYSHGLESYEEENWPEAVRFLERALRLFRALRDS-----EAFCRTNCEGPAQLPEPEAGSASFGGLYLAIFGHLLER 105 (471)
T ss_pred HHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHhhh-----HHHHHhhccCcccCCCchhcccccchhHHHHHHHHHHH
Confidence 4556678888899999999999988888653211100 000111110 000000112
Q ss_pred HHHHHHHHHHHHcCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 008613 131 DECIKVGSEVLAYDAKN----------VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED 199 (559)
Q Consensus 131 ~eAi~~~~~AL~ldP~~----------~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~ 199 (559)
..|+.-|...+--.|.. ...|.++-.+|.+.|++..|++.-...+.-+|+|..+...+..-+..+....
T Consensus 106 a~Cl~rCkg~~~~~~~~~~~~~~df~~r~py~YL~~ay~k~~~l~kAv~aa~tflv~~Pdde~ik~~ldyYq~~l~~s~ 184 (471)
T KOG4459|consen 106 AACLRRCKGELAARHGSDRSPYLDFRPRLPYQYLQFAYFKVGELEKAVAAAHTFLVANPDDEDIKQNLDYYQTMLGVSE 184 (471)
T ss_pred HHHHHHHhcccccCCCcccchhhhhccchHHHHHHHHHHHhhhHHHHHHhcceeeecCCcHHHHHHHHHHHHhccCCCc
Confidence 22333333333222222 2578888999999999999999999999999999999998888776665443
No 424
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=49.97 E-value=19 Score=25.22 Aligned_cols=17 Identities=18% Similarity=0.436 Sum_probs=13.1
Q ss_pred CchHHHHHHHHHHHHHH
Q 008613 535 KPGMILAICMLILAVIL 551 (559)
Q Consensus 535 ~~~~~~~~~~~~~a~~l 551 (559)
|.+++++++|++|.++|
T Consensus 14 r~Wi~F~l~mi~vFi~l 30 (38)
T PF09125_consen 14 RGWIAFALAMILVFIAL 30 (38)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHH
Confidence 55678889888887765
No 425
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=49.66 E-value=81 Score=34.78 Aligned_cols=82 Identities=22% Similarity=0.157 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008613 70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK 149 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~k 149 (559)
....|+.+|..++..|+++-|.++|.++-. +..+...|.-.|+-+.-.+....+....-
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----------------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~---- 404 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAKD-----------------FSGLLLLYSSTGDREKLSKLAKIAEERGD---- 404 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT------------------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-----
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----------------ccccHHHHHHhCCHHHHHHHHHHHHHccC----
Confidence 355788888888888888888888877532 33555566666665554444444443322
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Q 008613 150 ALYRRGQAYKDIGRLEEAVSDLSN 173 (559)
Q Consensus 150 al~~rG~A~~~lg~~eeAi~dlek 173 (559)
+...=.++..+|++++.++.+.+
T Consensus 405 -~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 405 -INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred -HHHHHHHHHHcCCHHHHHHHHHH
Confidence 11222344455666665555543
No 426
>PF07023 DUF1315: Protein of unknown function (DUF1315); InterPro: IPR009749 This family consists of several bacterial proteins of around 90 residues in length. The function of this family is unknown.
Probab=49.62 E-value=31 Score=29.52 Aligned_cols=35 Identities=23% Similarity=0.475 Sum_probs=29.6
Q ss_pred HHHHHhcCCHHHHHHHHHHh-------CCCCCHHHHHHHHHH
Q 008613 465 FSSMVKNMSPEMMANMSEQF-------GIKLSREDTEKFQQT 499 (559)
Q Consensus 465 ~~~mmk~m~p~~~~~m~~~~-------g~~~~~~~a~~~~~~ 499 (559)
|..|+.+|+||.-.++...- |..||+||=+..-|+
T Consensus 1 ~~~li~~mtPevY~rL~~AVElGKWpDG~~LT~eQre~~mQa 42 (93)
T PF07023_consen 1 IEQLIDSMTPEVYERLKQAVELGKWPDGRALTPEQRESCMQA 42 (93)
T ss_pred ChHHHHhCCHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHHHH
Confidence 35789999999999998877 899999998776553
No 427
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=48.99 E-value=1.9e+02 Score=36.09 Aligned_cols=128 Identities=17% Similarity=0.087 Sum_probs=82.3
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHH-----------------------
Q 008613 67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSC----------------------- 123 (559)
Q Consensus 67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~----------------------- 123 (559)
+.......|..|+.++-.|+|.+|+..|.+|+.+.....++- -.+.++-.++.|
T Consensus 238 ~r~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~l---W~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~ 314 (1185)
T PF08626_consen 238 KRCKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYL---WLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPI 314 (1185)
T ss_pred hhhhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHh---hhHHHHHHHHHHHHHHhccCCCccccchhcccCCC
Confidence 344577888999999999999999999999998876544320 000011111111
Q ss_pred ---------------------------------------HH-HcCCHHHHHHHHHHHHHc----CCC--CHHHHHHHHHH
Q 008613 124 ---------------------------------------YL-KTKQYDECIKVGSEVLAY----DAK--NVKALYRRGQA 157 (559)
Q Consensus 124 ---------------------------------------yl-klg~y~eAi~~~~~AL~l----dP~--~~kal~~rG~A 157 (559)
.. -...+++++.+|.++... .|. +.++..+.+..
T Consensus 315 ~~~~~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~ 394 (1185)
T PF08626_consen 315 SSSTSSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARF 394 (1185)
T ss_pred CCccCccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHH
Confidence 11 112477888888888632 333 24778888888
Q ss_pred HHHcC--------------------CHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHh
Q 008613 158 YKDIG--------------------RLEEAVSDLSNAHEVSPDD------GTIADVLRDAKEILMK 197 (559)
Q Consensus 158 ~~~lg--------------------~~eeAi~dlekAl~l~P~~------~~a~~~L~~a~~~l~~ 197 (559)
+.... .-.++...+.+++.+...+ -.++..+..++..++-
T Consensus 395 l~~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l~~~dqi~i~~~lA~vy~~lG~ 460 (1185)
T PF08626_consen 395 LVAQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDLSVEDQIRIYSGLASVYGSLGF 460 (1185)
T ss_pred HHHhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHhcch
Confidence 88777 7888888998888765432 2355555555555543
No 428
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=48.72 E-value=1.2e+02 Score=32.72 Aligned_cols=97 Identities=15% Similarity=0.073 Sum_probs=63.8
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCCc---hhhhhHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHc-CC--------CCHHH
Q 008613 84 EGRFSNALQKYLLAKKNLQGIHSS---EGRTLLLACS-LNSMSCYLKTKQYDECIKVGSEVLAY-DA--------KNVKA 150 (559)
Q Consensus 84 ~g~y~eAi~~Y~kAL~l~p~~~~~---e~~~l~~~~~-~nlA~~ylklg~y~eAi~~~~~AL~l-dP--------~~~ka 150 (559)
+....++-....+.....-.+... +.+..-+.+. .-+-.+|+++++++-|-..+...... -| ..+..
T Consensus 143 ~d~l~~~sr~l~R~Fn~il~dR~p~ln~skk~g~y~iaNlL~~iY~Rl~~~~l~~n~lka~~~vs~~Di~~~~~sq~v~f 222 (413)
T COG5600 143 QDNLSKISRLLTRMFNSILNDRSPALNPSKKVGLYYIANLLFQIYLRLGRFKLCENFLKASKEVSMPDISEYQKSQVVVF 222 (413)
T ss_pred HhhHHHHHHHHHHHHHHhcCCcCccCChhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccccchhhhcceeeh
Confidence 444555656666666554333222 2222222222 23568899999998877655433321 12 23468
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008613 151 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 180 (559)
Q Consensus 151 l~~rG~A~~~lg~~eeAi~dlekAl~l~P~ 180 (559)
+|.+|.+|.-..++.+|...++.|+..+|.
T Consensus 223 ~YYLG~~~l~~en~heA~~~L~~aFl~c~~ 252 (413)
T COG5600 223 HYYLGIYYLLNENFHEAFLHLNEAFLQCPW 252 (413)
T ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHhChh
Confidence 999999999999999999999999999987
No 429
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=48.49 E-value=2.7e+02 Score=28.25 Aligned_cols=101 Identities=11% Similarity=-0.006 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHcC--
Q 008613 68 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD-ECIKVGSEVLAYD-- 144 (559)
Q Consensus 68 ~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~-eAi~~~~~AL~ld-- 144 (559)
.+..+.++.=+..+++.|++.-|.++-.-.++....... .......-++..++.....-+ +.....+++++..
T Consensus 7 ~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~----~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~ 82 (260)
T PF04190_consen 7 DEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSED----PVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKF 82 (260)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-------SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHcc
Confidence 344777788888899999999887775444433221110 001113346666666655322 3445555666543
Q ss_pred ----CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008613 145 ----AKNVKALYRRGQAYKDIGRLEEAVSDLS 172 (559)
Q Consensus 145 ----P~~~kal~~rG~A~~~lg~~eeAi~dle 172 (559)
-.++..|...|..|...+++.+|..+|-
T Consensus 83 ~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 83 GSYKFGDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp SS-TT--HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 2468999999999999999999998873
No 430
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=48.26 E-value=37 Score=28.17 Aligned_cols=34 Identities=18% Similarity=0.095 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 008613 68 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNL 101 (559)
Q Consensus 68 ~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~ 101 (559)
.+.+-.+.++|..+-..|+.++|+.+|+++++..
T Consensus 5 ~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l 38 (79)
T cd02679 5 YKQAFEEISKALRADEWGDKEQALAHYRKGLREL 38 (79)
T ss_pred HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHH
Confidence 3446667777777777788888888888888754
No 431
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=47.97 E-value=2e+02 Score=32.40 Aligned_cols=81 Identities=22% Similarity=0.221 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008613 115 ACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI 194 (559)
Q Consensus 115 ~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~ 194 (559)
.|+..+-.++-..-++.-....|+++|++. ++-.+|+.++++|... ..+.-...+++.++.+-++..+-..|....+.
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk 144 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK 144 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 366666666655556666668899999764 5778999999999988 55778888999999999998888888887777
Q ss_pred HHh
Q 008613 195 LMK 197 (559)
Q Consensus 195 l~~ 197 (559)
++.
T Consensus 145 ik~ 147 (711)
T COG1747 145 IKK 147 (711)
T ss_pred hch
Confidence 543
No 432
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=47.49 E-value=45 Score=33.40 Aligned_cols=53 Identities=19% Similarity=0.226 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Q 008613 88 SNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK-TKQYDECIKVGSEVL 141 (559)
Q Consensus 88 ~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylk-lg~y~eAi~~~~~AL 141 (559)
+.|...|.+|+.+...+. .+.++++.-+..|.+..|+. +++.++|+..+.+++
T Consensus 143 ~~a~~aY~~A~~~a~~~L-~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~af 196 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKEL-PPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAF 196 (236)
T ss_dssp HHHHHHHHHHHHHHHHHS-CTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhccc-CCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 567777888887655421 12345566677777766644 778888888887775
No 433
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.81 E-value=3.5e+02 Score=30.49 Aligned_cols=78 Identities=10% Similarity=-0.045 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCC
Q 008613 68 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ-YDECIKVGSEVLAYDAK 146 (559)
Q Consensus 68 ~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~-y~eAi~~~~~AL~ldP~ 146 (559)
....-.+.-+|.++-..|+...|..+|..+++-..... +..=+...++|.+|..|..++. ..+|..+..+|-+...+
T Consensus 446 Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~--~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 446 DDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRT--EDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc--cccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 33456667788888899999999999888874311110 0011234578888888888877 77888777777766544
Q ss_pred C
Q 008613 147 N 147 (559)
Q Consensus 147 ~ 147 (559)
+
T Consensus 524 Y 524 (546)
T KOG3783|consen 524 Y 524 (546)
T ss_pred c
Confidence 4
No 434
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=46.74 E-value=62 Score=33.19 Aligned_cols=101 Identities=17% Similarity=0.043 Sum_probs=65.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcCCCCCc--hhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHH
Q 008613 80 ELYSEGRFSNALQKYLLAKKNLQGIHSS--EGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN------VKAL 151 (559)
Q Consensus 80 ~~~k~g~y~eAi~~Y~kAL~l~p~~~~~--e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~------~kal 151 (559)
.++..++.-.|+-.|...+.-.|.+... ....-+...|+....|+- .-....|.++++.||-+.-.. .-+.
T Consensus 4 ~L~D~~e~L~~L~~~~~~~~~~~~NL~~l~~~a~~lEk~~~~Fs~~~s-~~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~ 82 (368)
T COG5091 4 ALYDEKEPLKALHLYDEILKGSPTNLTALIFKAACLEKLYFGFSDWHS-DATMENAKELLDKALMTAEGRGDRSKIGLVN 82 (368)
T ss_pred chhcccchHHHhhhhhhhhccCCcceeEEeehhhhHHHHHhhhhhhhc-ccChhhHHHHHHHHHHhhhccCCcceeeeeh
Confidence 4555666667788887777665554321 001111223344444442 235677888888888653221 2467
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008613 152 YRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181 (559)
Q Consensus 152 ~~rG~A~~~lg~~eeAi~dlekAl~l~P~~ 181 (559)
++++.+|+.+.+|+-|..+|.+|+.+.-++
T Consensus 83 ~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d 112 (368)
T COG5091 83 FRYFVHFFNIKDYELAQSYFKKAKNLYVDD 112 (368)
T ss_pred hhhHHHhhhHHHHHHHHHHHHHHHHHhhcc
Confidence 899999999999999999999999986543
No 435
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=46.32 E-value=85 Score=32.93 Aligned_cols=30 Identities=23% Similarity=0.163 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKN 100 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l 100 (559)
+-.|..++...-+.++|.+|+.+|..+|++
T Consensus 10 aI~lv~kA~~eD~a~nY~eA~~lY~~aleY 39 (439)
T KOG0739|consen 10 AIDLVKKAIDEDNAKNYEEALRLYQNALEY 39 (439)
T ss_pred HHHHHHHHhhhcchhchHHHHHHHHHHHHH
Confidence 344444555555667777777777777653
No 436
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.37 E-value=1.3e+02 Score=34.02 Aligned_cols=96 Identities=16% Similarity=0.025 Sum_probs=64.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCC-CCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHHH
Q 008613 77 QGNELYSEGRFSNALQKYLLAKKNLQG-IHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA--KNVKALYR 153 (559)
Q Consensus 77 ~Gn~~~k~g~y~eAi~~Y~kAL~l~p~-~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP--~~~kal~~ 153 (559)
.=..+-++|.+..|.+.+.-.+.++|. +|- -|.+-+-...++..+|.=-|+.++..-..+. ..+...|-
T Consensus 348 ~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl--------~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS 419 (665)
T KOG2422|consen 348 YMQSLAQRGCWRTALEWCKLLLSLDPSEDPL--------GILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYS 419 (665)
T ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCcCCch--------hHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHH
Confidence 334467799999999999999999998 653 2445555566677788888887776632211 12233445
Q ss_pred HHHHHHHcCC-----HHHHHHHHHHHHHhCCC
Q 008613 154 RGQAYKDIGR-----LEEAVSDLSNAHEVSPD 180 (559)
Q Consensus 154 rG~A~~~lg~-----~eeAi~dlekAl~l~P~ 180 (559)
++.|+..+.. -..|..++.+|++.+|.
T Consensus 420 ~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 420 LALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 5555544433 34689999999999885
No 437
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=45.01 E-value=1.8e+02 Score=30.01 Aligned_cols=116 Identities=16% Similarity=0.049 Sum_probs=70.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHcCCCCHHHHH
Q 008613 77 QGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY----DECIKVGSEVLAYDAKNVKALY 152 (559)
Q Consensus 77 ~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y----~eAi~~~~~AL~ldP~~~kal~ 152 (559)
.-..++..++|++=-..|.+...-.......+.. + .+.....+.+..... ..-++..+.=++-.|++..++.
T Consensus 6 ~ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~--Y--~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~L 81 (277)
T PF13226_consen 6 DIRELLQARDFAELDALLARLLQAWLQSRDGEQR--Y--FRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHL 81 (277)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhhhhccCccch--H--HHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHH
Confidence 3456788889988888888877544332221111 0 111111111121111 1233444444667999988887
Q ss_pred HHHHHHHHc----------------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008613 153 RRGQAYKDI----------------------GRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM 196 (559)
Q Consensus 153 ~rG~A~~~l----------------------g~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~ 196 (559)
.+|..+... ...+.|+.++.+|+.++|+...+...+-.+...++
T Consensus 82 a~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fg 147 (277)
T PF13226_consen 82 AMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFG 147 (277)
T ss_pred HHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcC
Confidence 777766554 23567899999999999999888777777655554
No 438
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=44.51 E-value=1.7e+02 Score=23.62 Aligned_cols=16 Identities=19% Similarity=0.492 Sum_probs=7.6
Q ss_pred HcCCHHHHHHHHHHHH
Q 008613 126 KTKQYDECIKVGSEVL 141 (559)
Q Consensus 126 klg~y~eAi~~~~~AL 141 (559)
..|+|++|+..|..++
T Consensus 18 ~~g~y~eA~~~Y~~ai 33 (75)
T cd02678 18 NAGNYEEALRLYQHAL 33 (75)
T ss_pred HcCCHHHHHHHHHHHH
Confidence 3445555555544443
No 439
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=44.28 E-value=2.9e+02 Score=32.48 Aligned_cols=23 Identities=13% Similarity=0.216 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHH
Q 008613 149 KALYRRGQAYKDIGRLEEAVSDL 171 (559)
Q Consensus 149 kal~~rG~A~~~lg~~eeAi~dl 171 (559)
..|...+.-+-..|+|.||...|
T Consensus 825 ~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 825 SLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHhHHhHHhhcchhhhhhee
Confidence 34556677777888898888877
No 440
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.26 E-value=3.4e+02 Score=28.12 Aligned_cols=56 Identities=13% Similarity=0.071 Sum_probs=43.1
Q ss_pred HcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008613 83 SEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY 143 (559)
Q Consensus 83 k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l 143 (559)
+..+.++|+..|.+++++.+.-.+... .++-..-.+++++++|++-...|.+.|.+
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGF-----KALKQmiKI~f~l~~~~eMm~~Y~qlLTY 94 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGF-----KALKQMIKINFRLGNYKEMMERYKQLLTY 94 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHH-----HHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 455789999999999999766554222 24556667888999999999999988864
No 441
>PF15469 Sec5: Exocyst complex component Sec5
Probab=44.18 E-value=61 Score=30.79 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=20.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcCCC
Q 008613 80 ELYSEGRFSNALQKYLLAKKNLQGI 104 (559)
Q Consensus 80 ~~~k~g~y~eAi~~Y~kAL~l~p~~ 104 (559)
.+.+.|+|+.++..|.+|..+....
T Consensus 95 ~~i~~~dy~~~i~dY~kak~l~~~~ 119 (182)
T PF15469_consen 95 ECIKKGDYDQAINDYKKAKSLFEKY 119 (182)
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHHh
Confidence 3678999999999999999875443
No 442
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=44.18 E-value=1.7e+02 Score=33.13 Aligned_cols=91 Identities=18% Similarity=0.157 Sum_probs=45.2
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH
Q 008613 85 GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRL 164 (559)
Q Consensus 85 g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~ 164 (559)
.+|.-|+-.|-..-++.|...... + +.-|.+||...+.-. +-.++--|..+|-.|++.++|
T Consensus 274 ~~YPmALg~LadLeEi~pt~~r~~-------~----------~~l~~~AI~sa~~~Y--~n~HvYPYty~gg~~yR~~~~ 334 (618)
T PF05053_consen 274 ARYPMALGNLADLEEIDPTPGRPT-------P----------LELFNEAISSARTYY--NNHHVYPYTYLGGYYYRHKRY 334 (618)
T ss_dssp TT-HHHHHHHHHHHHHS--TTS---------H----------HHHHHHHHHHHHHHC--TT--SHHHHHHHHHHHHTT-H
T ss_pred hhCchhhhhhHhHHhhccCCCCCC-------H----------HHHHHHHHHHHHHHh--cCCccccceehhhHHHHHHHH
Confidence 456667777777666666543210 0 001233443333222 333445566667777777777
Q ss_pred HHHHHHHHHHHHh------CCCCHHHHHHHHHHHHH
Q 008613 165 EEAVSDLSNAHEV------SPDDGTIADVLRDAKEI 194 (559)
Q Consensus 165 eeAi~dlekAl~l------~P~~~~a~~~L~~a~~~ 194 (559)
.+|+..|-.+-.+ .-+|.+|++.+-++-..
T Consensus 335 ~eA~~~Wa~aa~Vi~~YnY~reDeEiYKEfleIAne 370 (618)
T PF05053_consen 335 REALRSWAEAADVIRKYNYSREDEEIYKEFLEIANE 370 (618)
T ss_dssp HHHHHHHHHHHHHHTTSB--GGGHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcccCccHHHHHHHHHHHHHH
Confidence 7777777666543 22456666666555433
No 443
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.85 E-value=3.4e+02 Score=29.06 Aligned_cols=42 Identities=10% Similarity=-0.026 Sum_probs=23.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008613 151 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE 193 (559)
Q Consensus 151 l~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~ 193 (559)
|.+...-|..-.++-.+..+|.++|-..|++ +....+..+.+
T Consensus 197 Y~ny~~~yea~~~l~npYv~Yl~~lf~a~n~-dv~kg~~~~~e 238 (449)
T COG3014 197 YSNYLDKYEAYQGLLNPYVSYLSGLFYALNG-DVNKGLGYLNE 238 (449)
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHhcccCc-cHhHHHHHHHH
Confidence 4444455555556666777777777777765 34444444433
No 444
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=43.81 E-value=62 Score=34.54 Aligned_cols=67 Identities=9% Similarity=0.027 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHH
Q 008613 67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 134 (559)
Q Consensus 67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi 134 (559)
..+.+..+...|+.++..++|+.|...|..|..+....... .+.-....++..|..++++.+++..+
T Consensus 37 ~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge-~~~e~~eal~~YGkslLela~~e~~V 103 (400)
T KOG4563|consen 37 KEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGE-KHLETFEALFLYGKSLLELAKEESQV 103 (400)
T ss_pred HHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44557888999999999999999999999999875543211 11112224444555555555555544
No 445
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=43.59 E-value=86 Score=34.34 Aligned_cols=30 Identities=20% Similarity=0.207 Sum_probs=13.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC--CCHH
Q 008613 326 GENPHANGDSIETNFNGFRPGSTPPN--MRPD 355 (559)
Q Consensus 326 g~~~~~~~~~~~~~~~g~~~g~~~~~--~~P~ 355 (559)
|+++++.+++..++.+|+++|++.++ -+|.
T Consensus 66 g~~g~~s~~g~~s~~~gg~~~~~g~gsscnP~ 97 (641)
T KOG3915|consen 66 GGGGGGSGGGGGSSGNGGGGGGGGGGSSCNPN 97 (641)
T ss_pred CCCCCCCCCCccccCCCCCCCCCCCccccCCc
Confidence 33344444444444554444433333 2665
No 446
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=43.55 E-value=43 Score=27.50 Aligned_cols=18 Identities=33% Similarity=0.434 Sum_probs=11.2
Q ss_pred HcCCHHHHHHHHHHHHHh
Q 008613 160 DIGRLEEAVSDLSNAHEV 177 (559)
Q Consensus 160 ~lg~~eeAi~dlekAl~l 177 (559)
..|+|++|+..|..+++.
T Consensus 18 ~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 18 EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HhhhHHHHHHHHHHHHHH
Confidence 356666666666666654
No 447
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=43.16 E-value=1.9e+02 Score=32.18 Aligned_cols=59 Identities=19% Similarity=0.125 Sum_probs=46.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613 151 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 209 (559)
Q Consensus 151 l~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i 209 (559)
...++..-...|+|..+...+.+++--+|+|..++.....+.+.|+-..+....+...+
T Consensus 455 Vl~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLgYqaE~A~wRn~yL 513 (655)
T COG2015 455 VLELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALEQLGYQAESATWRNFYL 513 (655)
T ss_pred HHHHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhhhhhccchhhhhHH
Confidence 34456666778999999999999999999999999999999999876655444444433
No 448
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=43.09 E-value=54 Score=20.61 Aligned_cols=29 Identities=14% Similarity=0.127 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008613 128 KQYDECIKVGSEVLAYDAKNVKALYRRGQ 156 (559)
Q Consensus 128 g~y~eAi~~~~~AL~ldP~~~kal~~rG~ 156 (559)
|+++.|...|+++++..|.++..|.....
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 46788999999999999988887776543
No 449
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.64 E-value=3.2e+02 Score=26.57 Aligned_cols=122 Identities=12% Similarity=0.012 Sum_probs=78.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--C--HHHHHHHH
Q 008613 80 ELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK--N--VKALYRRG 155 (559)
Q Consensus 80 ~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~--~--~kal~~rG 155 (559)
.+...++.++|+..|...-... ...+...+....+.+....|+-..|+.+|+++-.-.|- - --+.++-+
T Consensus 67 ~lA~~~k~d~Alaaf~~lektg-------~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa 139 (221)
T COG4649 67 KLAQENKTDDALAAFTDLEKTG-------YGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAA 139 (221)
T ss_pred HHHHcCCchHHHHHHHHHHhcC-------CCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHH
Confidence 3444555555655555433211 12334557778899999999999999999998765432 2 24566777
Q ss_pred HHHHHcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHHHhhcCCCCCccch
Q 008613 156 QAYKDIGRLEEAVSDLSNAH-EVSPDDGTIADVLRDAKEILMKEDGHHGPRGLL 208 (559)
Q Consensus 156 ~A~~~lg~~eeAi~dlekAl-~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~ 208 (559)
..+...|-|++-....+..- .-+|-...+++.|+.+..+.++..++.+.+...
T Consensus 140 ~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 140 YLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence 78888899988776665321 113334568888888888777766655555543
No 450
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=41.30 E-value=5.8e+02 Score=28.92 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=27.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008613 123 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKD 160 (559)
Q Consensus 123 ~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~ 160 (559)
-|-...+|.+||+.....|++|..+.++.-.+-.-++.
T Consensus 214 ~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 214 KYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred HhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 34445688899998888888888887776665555544
No 451
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=40.02 E-value=5.7e+02 Score=28.48 Aligned_cols=106 Identities=13% Similarity=0.150 Sum_probs=64.3
Q ss_pred HHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC--CHHHHH
Q 008613 91 LQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIG--RLEEAV 168 (559)
Q Consensus 91 i~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg--~~eeAi 168 (559)
++.|++.+.........+ +.-+...+..|-.+.+. .+-..|+..|..||.-+|..+.-.+.--..|.... +----+
T Consensus 291 nqhFQ~~v~sLEee~a~e-rqqlvetH~~RV~AmlN-drrR~Ale~ylaALqa~pprp~~Vl~aLkrYvRAEqKdr~HTl 368 (615)
T KOG3540|consen 291 NQHFQKTVSSLEEEAARE-RQQLVETHEARVEAMLN-DRRRDALENYLAALQADPPRPHRVLQALKRYVRAEQKDRMHTL 368 (615)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 344665554433322211 12222334444334332 45678999999999999998865555555554443 344578
Q ss_pred HHHHHHHHhCCCC-----HHHHHHHHHHHHHHHhh
Q 008613 169 SDLSNAHEVSPDD-----GTIADVLRDAKEILMKE 198 (559)
Q Consensus 169 ~dlekAl~l~P~~-----~~a~~~L~~a~~~l~~~ 198 (559)
..|+-.+..+|.. ..+...|..+..++.+.
T Consensus 369 rhyqHv~~vDpkkAaqmk~qV~thLrvIeeR~Nqs 403 (615)
T KOG3540|consen 369 RHYQHVLAVDPKKAAQMKSQVMTHLRVIEERINQS 403 (615)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcch
Confidence 9999999999975 34555666777766554
No 452
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.02 E-value=3.3e+02 Score=28.34 Aligned_cols=106 Identities=9% Similarity=-0.043 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhcC---CCCCchhh----------hhHHHHH--HHHHHHHHHcCCH
Q 008613 67 EFNAAKMLKKQGNELYSEGRFSNALQK-YLLAKKNLQ---GIHSSEGR----------TLLLACS--LNSMSCYLKTKQY 130 (559)
Q Consensus 67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~-Y~kAL~l~p---~~~~~e~~----------~l~~~~~--~nlA~~ylklg~y 130 (559)
..++.+.++.+.+.+.+.+.|+.|+++ |..|+.+.. ..+..... .+..... -|++.+.-..+.-
T Consensus 22 ~Yeahqm~RTl~fR~~~~K~~~~aieL~~~ga~~ffk~~Q~~saaDl~~~~le~~eka~~ad~~~~~anl~~ll~e~~~~ 101 (312)
T KOG3024|consen 22 YYEAHQMYRTLVFRYTRQKAHEDAIELLYDGALCFFKLKQRGSAADLLVLVLEVLEKAEVADSLLKVANLAELLGEADPS 101 (312)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhHhHHHHHHHHHHHhhcCCC
Confidence 344566777777777777777777766 333333222 11111000 0011111 3444444444433
Q ss_pred HHHHH-HHHHHHHcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008613 131 DECIK-VGSEVLAYD-------AKNVKALYRRGQAYKDIGRLEEAVSDLS 172 (559)
Q Consensus 131 ~eAi~-~~~~AL~ld-------P~~~kal~~rG~A~~~lg~~eeAi~dle 172 (559)
+.... +.+++|+.. -.++..|..+|..+..-+++++|..+|-
T Consensus 102 eper~~~v~raikWS~~~~~~k~G~p~lH~~la~~l~~e~~~~~a~~HFl 151 (312)
T KOG3024|consen 102 EPERKTFVRRAIKWSKEFGEGKYGHPELHALLADKLWTEDNVEEARRHFL 151 (312)
T ss_pred ccHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcccHHHHHhHhh
Confidence 33333 334555432 2467888888888888888888888774
No 453
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=38.77 E-value=1.7e+02 Score=34.07 Aligned_cols=69 Identities=14% Similarity=0.070 Sum_probs=41.2
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008613 110 RTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLR 189 (559)
Q Consensus 110 ~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~ 189 (559)
...+..++.+.|..+..+..|++|.++|...-. .-+...+|+.+..|++ ++.....-|++......++
T Consensus 792 D~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ecly~le~f~~----LE~la~~Lpe~s~llp~~a 859 (1189)
T KOG2041|consen 792 DEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIECLYRLELFGE----LEVLARTLPEDSELLPVMA 859 (1189)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHHHHHHHHhhhh----HHHHHHhcCcccchHHHHH
Confidence 455667888888888888888888888866532 2234445555555543 3444444566544444444
Q ss_pred H
Q 008613 190 D 190 (559)
Q Consensus 190 ~ 190 (559)
+
T Consensus 860 ~ 860 (1189)
T KOG2041|consen 860 D 860 (1189)
T ss_pred H
Confidence 3
No 454
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=36.85 E-value=52 Score=20.65 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008613 116 CSLNSMSCYLKTKQYDECIKVGSEVLA 142 (559)
Q Consensus 116 ~~~nlA~~ylklg~y~eAi~~~~~AL~ 142 (559)
.|..+-.+|.+.|++++|.+.+.+-.+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 356666777888888888888777654
No 455
>PF04719 TAFII28: hTAFII28-like protein conserved region; InterPro: IPR006809 The general transcription factor, TFIID, consists of the TATA-binding protein (TBP) associated with a series of TBP-associated factors (TAFs) that together participate in the assembly of the transcription preinitiation complex. The conserved region is found at the C terminus of most member proteins. The crystal structure of hTAFII28 with hTAFII18 shows that this region is involved in the binding of these two subunits. The conserved region contains four alpha helices and three loops arranged as in histone H3 [, ].; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005634 nucleus; PDB: 1BH9_B 1BH8_B.
Probab=36.01 E-value=1.1e+02 Score=26.16 Aligned_cols=36 Identities=28% Similarity=0.414 Sum_probs=20.6
Q ss_pred HHHhccCCHHHHHHHHHH-HHHHHhhhhhHHHHHHHHhc
Q 008613 497 QQTMSSLSLNDLDRMMLW-ADRVQRGVQGVKKTKNWLLG 534 (559)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 534 (559)
+--++++||||++|---| ...+.+. .+||..+-+.|
T Consensus 2 ~~L~~~f~~eQ~~Rye~fRRs~~~k~--~ikkli~~~~~ 38 (90)
T PF04719_consen 2 QLLLSNFDEEQLDRYEAFRRSSFNKA--AIKKLINQVLG 38 (90)
T ss_dssp --------HHHHHHHHHHHH----HH--HHHHHHHHHHS
T ss_pred hHHHHcCCHHHHHHHHHHHHccCCHH--HHHHHHHHHcC
Confidence 445789999999999999 6667774 78888888888
No 456
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.97 E-value=4.4e+02 Score=30.31 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613 68 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKN 100 (559)
Q Consensus 68 ~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l 100 (559)
......|+.+|+.....+++..|.+++.++-.+
T Consensus 663 ~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 663 ANSEVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred hcchHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 344778999999999999999999999988654
No 457
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=35.88 E-value=1.2e+02 Score=28.05 Aligned_cols=30 Identities=13% Similarity=0.018 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008613 114 LACSLNSMSCYLKTKQYDECIKVGSEVLAY 143 (559)
Q Consensus 114 ~~~~~nlA~~ylklg~y~eAi~~~~~AL~l 143 (559)
..+++.+|.+|.++|+..++-+...+|.+.
T Consensus 120 p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 120 PEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 448899999999999999999999998864
No 458
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=35.82 E-value=98 Score=20.24 Aligned_cols=28 Identities=25% Similarity=0.201 Sum_probs=19.3
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008613 133 CIKVGSEVLAYDAKNVKALYRRGQAYKD 160 (559)
Q Consensus 133 Ai~~~~~AL~ldP~~~kal~~rG~A~~~ 160 (559)
.+..+..+|..+|.+..++..|-.++..
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll~~ 29 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLLKQ 29 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHHHH
Confidence 3566777777888887777776665544
No 459
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=35.49 E-value=1.4e+02 Score=33.66 Aligned_cols=82 Identities=5% Similarity=-0.193 Sum_probs=66.6
Q ss_pred HHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008613 95 LLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNA 174 (559)
Q Consensus 95 ~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekA 174 (559)
++-|+.+|.+.+ .|+.+-.-+... -+++....|++.+...|..+.+|-......+..++|+.-.+.|.+|
T Consensus 10 ~~rie~nP~di~---------sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RC 79 (656)
T KOG1914|consen 10 RERIEENPYDID---------SWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRC 79 (656)
T ss_pred HHHHhcCCccHH---------HHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 566777787755 788887666544 9999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCHHHHHH
Q 008613 175 HEVSPDDGTIADV 187 (559)
Q Consensus 175 l~l~P~~~~a~~~ 187 (559)
|..--+ -+.|..
T Consensus 80 LvkvLn-lDLW~l 91 (656)
T KOG1914|consen 80 LVKVLN-LDLWKL 91 (656)
T ss_pred HHHHhh-HhHHHH
Confidence 875322 445543
No 460
>cd02433 Nodulin-21_like_2 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_2: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=35.35 E-value=4e+02 Score=26.66 Aligned_cols=46 Identities=13% Similarity=0.193 Sum_probs=28.4
Q ss_pred HHhcCCHHHHHHHHHHh-CCCCCHHHHHHHHHHhccCCHHHHHHHHH
Q 008613 468 MVKNMSPEMMANMSEQF-GIKLSREDTEKFQQTMSSLSLNDLDRMML 513 (559)
Q Consensus 468 mmk~m~p~~~~~m~~~~-g~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 513 (559)
-+.|-+++..++|.+-+ ..-+++++|+...+.+..=...-++.||+
T Consensus 91 ~i~~~p~~e~~el~~iy~~~G~~~~~a~~~~~~l~~~~~~~~~~~~~ 137 (234)
T cd02433 91 ELRKHPLEEAAELALIYRAKGLDEEEAKRVASQLMNDPEQALDTLAR 137 (234)
T ss_pred HhhhCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCcchhHHHHHH
Confidence 34444555555555554 33468888888888887644334566666
No 461
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=34.44 E-value=3.8e+02 Score=29.59 Aligned_cols=27 Identities=4% Similarity=-0.218 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008613 115 ACSLNSMSCYLKTKQYDECIKVGSEVL 141 (559)
Q Consensus 115 ~~~~nlA~~ylklg~y~eAi~~~~~AL 141 (559)
..|..+|...+..|+++-|...|.++-
T Consensus 348 ~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 348 EKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp HHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 388999999999999999998887763
No 462
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=34.41 E-value=5.5e+02 Score=26.72 Aligned_cols=110 Identities=13% Similarity=0.090 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCc-----hhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008613 72 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSS-----EGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 146 (559)
Q Consensus 72 ~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~-----e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~ 146 (559)
..+-..++.++...+|..|++.++++++....+... ...++++.+..-=-+++-++++|.+++....+-...--+
T Consensus 36 ~lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEk 115 (309)
T PF07163_consen 36 SLLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEK 115 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCccc
Confidence 334446677888899999999999999987443321 122444433333347888999999999877665543222
Q ss_pred C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008613 147 N-VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG 182 (559)
Q Consensus 147 ~-~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~ 182 (559)
- +|.+-.--..|.+.+++....+.-. +--.+|+|.
T Consensus 116 lPpkIleLCILLysKv~Ep~amlev~~-~WL~~p~Nq 151 (309)
T PF07163_consen 116 LPPKILELCILLYSKVQEPAAMLEVAS-AWLQDPSNQ 151 (309)
T ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHH-HHHhCcccC
Confidence 2 3444444455667888766554444 333467663
No 463
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=34.37 E-value=4.2e+02 Score=35.15 Aligned_cols=112 Identities=15% Similarity=0.129 Sum_probs=77.0
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-C
Q 008613 67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD-A 145 (559)
Q Consensus 67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ld-P 145 (559)
.-..++.|.+.+...-+.|+|+.|-.+..+|.+..+. . ++..+|......|+-..|+...++.++++ |
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~--~---------i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESRLP--E---------IVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcccc--h---------HHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 4445777888888888899999999988888876532 2 88889999999999999999999998653 2
Q ss_pred C----------CH------HHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHH
Q 008613 146 K----------NV------KALYRRGQAYKDIGRL--EEAVSDLSNAHEVSPDDGTIADVLR 189 (559)
Q Consensus 146 ~----------~~------kal~~rG~A~~~lg~~--eeAi~dlekAl~l~P~~~~a~~~L~ 189 (559)
+ .. ++.+..+.-....+++ +.-+..|+.+.+++|....-+..++
T Consensus 1735 ~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1735 DLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred cccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHH
Confidence 2 11 1222222222233332 3456778888888886655555454
No 464
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=34.05 E-value=13 Score=41.80 Aligned_cols=102 Identities=15% Similarity=0.120 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHH--HHHcCC
Q 008613 70 AAKMLKKQGNELYSEGRFSNALQKYLLAK--KNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSE--VLAYDA 145 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL--~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~--AL~ldP 145 (559)
....+..-+..++..|++..|...+.+.- .+.+.. ......-.|.+++..++++.|+..+.. ...+.+
T Consensus 23 ~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q--------~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~ 94 (536)
T PF04348_consen 23 RAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQ--------QARYQLLRARLALAQGDPEQALSLLNAQDLWQLPP 94 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHH--------HHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCH
Confidence 35556667778888999999998887654 222221 223556678889999999999998874 222222
Q ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008613 146 K-NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP 179 (559)
Q Consensus 146 ~-~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P 179 (559)
. ...+|..++.+|...|++-+|+..+-..-.+-+
T Consensus 95 ~~~~~~~~l~A~a~~~~~~~l~Aa~~~i~l~~lL~ 129 (536)
T PF04348_consen 95 EQQARYHQLRAQAYEQQGDPLAAARERIALDPLLP 129 (536)
T ss_dssp -----------------------------------
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcC
Confidence 2 346677789999999999988887655544433
No 465
>PRK10869 recombination and repair protein; Provisional
Probab=33.99 E-value=7.4e+02 Score=28.08 Aligned_cols=69 Identities=14% Similarity=0.175 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHhh
Q 008613 130 YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD-GTIADVLRDAKEILMKE 198 (559)
Q Consensus 130 y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~-~~a~~~L~~a~~~l~~~ 198 (559)
...++.....+.+++|.....+-.+-.+|..+.+....+..|...+..||.. ..+..+|..+....+++
T Consensus 246 l~~~~~~l~~~~~~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~~ie~Rl~~l~~L~rKy 315 (553)
T PRK10869 246 LYSAKQLLSELIGMDSKLSGVLDMLEEALIQIQEASDELRHYLDRLDLDPNRLAELEQRLSKQISLARKH 315 (553)
T ss_pred HHHHHHHHHHHhhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666666667788877888888889998888888887777777777643 33455555554444443
No 466
>PF12854 PPR_1: PPR repeat
Probab=33.94 E-value=95 Score=20.91 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 008613 149 KALYRRGQAYKDIGRLEEAVSDLS 172 (559)
Q Consensus 149 kal~~rG~A~~~lg~~eeAi~dle 172 (559)
..|..+-.+|.+.|++++|++.|+
T Consensus 8 ~ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 8 VTYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344444445555555555554443
No 467
>cd08977 SusD starch binding outer membrane protein SusD. SusD-like proteins from Bacteroidetes, members of the human distal gut microbiota, are part of the starch utilization system (Sus). Sus is one of the large clusters of glycosyl hydrolases, called polysaccharide utilization loci (PULs), which play an important role in polysaccharide recognition and uptake, and it is needed for growth on amylose, amylopectin, pullulan, and maltooligosaccharides. SusD, together with SusC, a predicted beta-barrel porin, forms the minimum outer-membrane starch-binding complex. The adult human distal gut microbiota is essential for digestion of a large variety of dietary polysaccharides, for which humans lack the necessary glycosyl hydrolases.
Probab=33.72 E-value=2.8e+02 Score=28.98 Aligned_cols=48 Identities=15% Similarity=0.122 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHcCCCC-----------------HHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHh
Q 008613 130 YDECIKVGSEVLAYDAKN-----------------VKALYRRGQAYKDIG-----RLEEAVSDLSNAHEV 177 (559)
Q Consensus 130 y~eAi~~~~~AL~ldP~~-----------------~kal~~rG~A~~~lg-----~~eeAi~dlekAl~l 177 (559)
|+..+.+++.|+.+-|.. .-++..++.+|+..+ +|++|+..+++++..
T Consensus 141 y~~i~~dL~~A~~~L~~~~~~~~~~~~~~~~r~~k~aA~al~ar~~L~~~~~~~~~~~~A~~~~~~vi~~ 210 (359)
T cd08977 141 YTQILADLDEAIALLPEASSAQDFYIYFGDGRAWKKAARALLARVYLYLANYTAADYAEALTAAEKSFKG 210 (359)
T ss_pred HHHHHHHHHHHHHhccccccccccccccCcchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhc
Confidence 455677777777654421 246777888898888 788898888888763
No 468
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=33.64 E-value=3.8e+02 Score=33.15 Aligned_cols=20 Identities=25% Similarity=0.491 Sum_probs=10.2
Q ss_pred HHHHHHcCCHHHHHHHHHHH
Q 008613 155 GQAYKDIGRLEEAVSDLSNA 174 (559)
Q Consensus 155 G~A~~~lg~~eeAi~dlekA 174 (559)
+.+|...|+.++|+..|+.+
T Consensus 959 al~Ye~~GklekAl~a~~~~ 978 (1265)
T KOG1920|consen 959 ALMYERCGKLEKALKAYKEC 978 (1265)
T ss_pred HHHHHHhccHHHHHHHHHHh
Confidence 33444455555555555433
No 469
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=33.33 E-value=1e+02 Score=24.71 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=10.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 008613 119 NSMSCYLKTKQYDECIKVGSEVL 141 (559)
Q Consensus 119 nlA~~ylklg~y~eAi~~~~~AL 141 (559)
..|.-.-+.|+|++|+..|..++
T Consensus 11 ~~Av~~D~~g~~~~Al~~Y~~a~ 33 (75)
T cd02656 11 KQAVKEDEDGNYEEALELYKEAL 33 (75)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444455555555444443
No 470
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=33.31 E-value=88 Score=19.84 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=19.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008613 117 SLNSMSCYLKTKQYDECIKVGSEVLA 142 (559)
Q Consensus 117 ~~nlA~~ylklg~y~eAi~~~~~AL~ 142 (559)
|..+-.+|.+.|++++|++.|.+..+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55566777788888888888877654
No 471
>PF12854 PPR_1: PPR repeat
Probab=33.15 E-value=85 Score=21.14 Aligned_cols=25 Identities=20% Similarity=0.204 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q 008613 115 ACSLNSMSCYLKTKQYDECIKVGSE 139 (559)
Q Consensus 115 ~~~~nlA~~ylklg~y~eAi~~~~~ 139 (559)
..|.-+-.+|.+.|++++|++.+++
T Consensus 8 ~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 8 VTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 4788888999999999999998875
No 472
>PRK11103 PTS system mannose-specific transporter subunit IID; Provisional
Probab=33.06 E-value=42 Score=34.68 Aligned_cols=28 Identities=21% Similarity=0.584 Sum_probs=19.3
Q ss_pred HHhcCc--hHHHHHHHHHHHHHHHHhcccC
Q 008613 531 WLLGKP--GMILAICMLILAVILHRLGFIG 558 (559)
Q Consensus 531 ~~~~~~--~~~~~~~~~~~a~~l~~~~~~~ 558 (559)
|+++|+ -..+-++++|+++|++++|++|
T Consensus 253 ~llkKk~~~~~li~~~~v~~ii~~~~Gil~ 282 (282)
T PRK11103 253 WLLRKKVNALWIIVGFFVIGIAGYWCGLLG 282 (282)
T ss_pred HHHhCCccHHHHHHHHHHHHHHHHHHhhcC
Confidence 666655 3444455557888999999876
No 473
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=32.17 E-value=8.1e+02 Score=27.94 Aligned_cols=66 Identities=15% Similarity=0.178 Sum_probs=36.5
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHhh
Q 008613 133 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD-GTIADVLRDAKEILMKE 198 (559)
Q Consensus 133 Ai~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~-~~a~~~L~~a~~~l~~~ 198 (559)
|+.....+.++|+........+..+|..+.+.-..+..|-.-+..||+. ..+..+|..++...+++
T Consensus 250 a~~~l~~~~~~d~~l~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY 316 (557)
T COG0497 250 ALEALEDLSEYDGKLSELAELLEEALYELEEASEELRAYLDELEFDPNRLEEVEERLFALKSLARKY 316 (557)
T ss_pred HHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444445566666666666667776666666666666556666653 23445555554444443
No 474
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=32.16 E-value=7.5e+02 Score=27.58 Aligned_cols=58 Identities=21% Similarity=0.120 Sum_probs=40.4
Q ss_pred CHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613 86 RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 150 (559)
Q Consensus 86 ~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka 150 (559)
+-..|++-|..||+.+|..|.. .+..-+..+--..++-.--++.|..++..||..+..
T Consensus 327 rrR~Ale~ylaALqa~pprp~~-------Vl~aLkrYvRAEqKdr~HTlrhyqHv~~vDpkkAaq 384 (615)
T KOG3540|consen 327 RRRDALENYLAALQADPPRPHR-------VLQALKRYVRAEQKDRMHTLRHYQHVLAVDPKKAAQ 384 (615)
T ss_pred HHHHHHHHHHHHHhcCCCChHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence 3478999999999998887751 111222333334566677889999999999976543
No 475
>PF10858 DUF2659: Protein of unknown function (DUF2659); InterPro: IPR022588 This bacterial family of proteins has no known function.
Probab=32.09 E-value=4.7e+02 Score=25.16 Aligned_cols=98 Identities=14% Similarity=0.004 Sum_probs=67.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CC
Q 008613 74 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY--------DA 145 (559)
Q Consensus 74 lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l--------dP 145 (559)
+.++-....+.|.|.+|.++..+.++..... .....|.+++.|.+-..+-.--+.+-++.++. .|
T Consensus 96 ~leqva~kis~~~~~eaK~LlnkIi~nk~YS-------eistsYaRi~wc~~vidD~nl~i~dk~kL~kyL~yfdd~~kP 168 (220)
T PF10858_consen 96 ALEQVAIKISEKKYSEAKQLLNKIIENKEYS-------EISTSYARINWCCMVIDDQNLNIQDKEKLIKYLNYFDDEKKP 168 (220)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHhhhhHH-------HHHHHHHHHHHHHheecccccChhhHHHHHHHHhhccCCCCc
Confidence 3344455677899999999999999853322 24568888999988877655555555555443 23
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008613 146 KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS 178 (559)
Q Consensus 146 ~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~ 178 (559)
-++.+-...+.--...+...+|.+.++..+.-+
T Consensus 169 FWatAtI~kaiwdik~nm~~~aeknL~~l~~Sn 201 (220)
T PF10858_consen 169 FWATATIIKAIWDIKNNMKNQAEKNLKNLLASN 201 (220)
T ss_pred hHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Confidence 345555555555667788899999999887653
No 476
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=32.09 E-value=1e+02 Score=27.80 Aligned_cols=37 Identities=24% Similarity=0.399 Sum_probs=28.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008613 153 RRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLR 189 (559)
Q Consensus 153 ~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~ 189 (559)
.+|..+...|++++|+.+|-+|+.++|.-..+...+.
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL~i~q 104 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVCPQPAELLQIYQ 104 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4688888889999999999999999988665555444
No 477
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=31.65 E-value=79 Score=26.22 Aligned_cols=23 Identities=4% Similarity=-0.168 Sum_probs=11.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 008613 119 NSMSCYLKTKQYDECIKVGSEVL 141 (559)
Q Consensus 119 nlA~~ylklg~y~eAi~~~~~AL 141 (559)
+.|.++-..|+.++|+.+|++++
T Consensus 13 ~kaL~~dE~g~~e~Al~~Y~~gi 35 (79)
T cd02679 13 SKALRADEWGDKEQALAHYRKGL 35 (79)
T ss_pred HHHhhhhhcCCHHHHHHHHHHHH
Confidence 44444444455555555555554
No 478
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=31.11 E-value=68 Score=22.11 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=13.2
Q ss_pred CchHHHHHHHHHHHHHHH-Hhc
Q 008613 535 KPGMILAICMLILAVILH-RLG 555 (559)
Q Consensus 535 ~~~~~~~~~~~~~a~~l~-~~~ 555 (559)
||-=.++.++++.++||- |||
T Consensus 4 kp~Gal~vv~iLt~~ILvFWfg 25 (34)
T PF08113_consen 4 KPKGALGVVMILTAFILVFWFG 25 (34)
T ss_dssp STHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcceeeeHHHHHHHHHHHHHH
Confidence 344456666667777766 776
No 479
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.10 E-value=1e+02 Score=33.44 Aligned_cols=105 Identities=16% Similarity=0.183 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Q 008613 86 RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLE 165 (559)
Q Consensus 86 ~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~e 165 (559)
+|..--..|..|. +..++|.||-+++++++|+..|+++| -+..+|.-.....+.+
T Consensus 11 ~~a~Ir~ayk~A~-----------------~~V~~gl~~dE~~~~e~a~~~Ye~gl--------~~i~~GIpvg~k~k~~ 65 (560)
T KOG2709|consen 11 DTAQIRAAYKGAY-----------------ASVEQGLCYDEVNDWENALAMYEKGL--------NLIVEGIPVGEKMKNA 65 (560)
T ss_pred HHHHHHHHHHHHH-----------------HHHHhhcchhhhcCHHHHHHHHHHHH--------HHHHhcCccccccccc
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh-----hcCCCCCccchhhhhchh
Q 008613 166 EAVSDLSNAHEVSPDDGTIADVLRDAKEILMK-----EDGHHGPRGLLIEEITEE 215 (559)
Q Consensus 166 eAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~-----~~~~~~~~~~~i~e~~e~ 215 (559)
.--..|+.|+.+-..-.+....++.-.+.|++ .+...++..+.+.|.++.
T Consensus 66 ~~~~~W~dAcaliQklkes~~~vr~Rl~vL~kqkqsid~~~~q~tpk~~~E~~~k 120 (560)
T KOG2709|consen 66 RKSEMWKDACALIQKLKESKSSVRHRLNVLKKQKQSIDEGPKQPTPKKIKEAEEK 120 (560)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCccccCchhhhccCcc
No 480
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=31.00 E-value=1.2e+02 Score=28.48 Aligned_cols=44 Identities=23% Similarity=0.322 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhh-------hhhHHHHHHHHhcCchHHHHHHHHHHHHH
Q 008613 507 DLDRMMLWADRVQRG-------VQGVKKTKNWLLGKPGMILAICMLILAVI 550 (559)
Q Consensus 507 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 550 (559)
..|++-..+.|+|.. .|+++-..+|=--+.-.++.++.||++++
T Consensus 60 Rydrlr~va~rvQ~vlgd~At~gERl~allsWrdP~aT~lf~~~clv~avv 110 (156)
T PF08372_consen 60 RYDRLRSVAGRVQNVLGDVATQGERLQALLSWRDPRATALFVVFCLVAAVV 110 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHH
Confidence 567788888888877 45666677775333333444444455544
No 481
>PF11137 DUF2909: Protein of unknown function (DUF2909); InterPro: IPR021313 This is a family of proteins conserved in Proteobacteria of unknown function.
Probab=30.99 E-value=43 Score=26.58 Aligned_cols=30 Identities=23% Similarity=0.259 Sum_probs=18.3
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHhccc
Q 008613 526 KKTKNWLLGKPGMILAICMLILAVILHRLGFI 557 (559)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~ 557 (559)
+|+..+|-.|+ .+++..+++-++-.|+|||
T Consensus 31 ~rm~~~L~~RV--~lS~~l~~lil~~~~~G~i 60 (63)
T PF11137_consen 31 KRMVKALGRRV--GLSALLFLLILIALYTGWI 60 (63)
T ss_pred chHHHHHHHHH--HHHHHHHHHHHHHHHhCCC
Confidence 34555554454 4566555565666689998
No 482
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.96 E-value=1.8e+02 Score=23.67 Aligned_cols=33 Identities=33% Similarity=0.384 Sum_probs=24.4
Q ss_pred HHHHHHHHHhc--CCHHHHHHHHHHhCCCCCHHHH
Q 008613 461 MKQMFSSMVKN--MSPEMMANMSEQFGIKLSREDT 493 (559)
Q Consensus 461 ~~~m~~~mmk~--m~p~~~~~m~~~~g~~~~~~~a 493 (559)
.++|...+.+| .++|++.-|..|+|.|-|..+-
T Consensus 26 rk~~~k~lk~NPpine~~iR~M~~qmGqKpSe~kI 60 (71)
T COG3763 26 RKQMKKQLKDNPPINEEMIRMMMAQMGQKPSEKKI 60 (71)
T ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCCchHHHH
Confidence 34455555555 5789999999999999987653
No 483
>cd08977 SusD starch binding outer membrane protein SusD. SusD-like proteins from Bacteroidetes, members of the human distal gut microbiota, are part of the starch utilization system (Sus). Sus is one of the large clusters of glycosyl hydrolases, called polysaccharide utilization loci (PULs), which play an important role in polysaccharide recognition and uptake, and it is needed for growth on amylose, amylopectin, pullulan, and maltooligosaccharides. SusD, together with SusC, a predicted beta-barrel porin, forms the minimum outer-membrane starch-binding complex. The adult human distal gut microbiota is essential for digestion of a large variety of dietary polysaccharides, for which humans lack the necessary glycosyl hydrolases.
Probab=30.87 E-value=1.3e+02 Score=31.45 Aligned_cols=57 Identities=19% Similarity=0.193 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHhcCCCCC--------chhhhhHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHc
Q 008613 87 FSNALQKYLLAKKNLQGIHS--------SEGRTLLLACSLNSMSCYLKTK-----QYDECIKVGSEVLAY 143 (559)
Q Consensus 87 y~eAi~~Y~kAL~l~p~~~~--------~e~~~l~~~~~~nlA~~ylklg-----~y~eAi~~~~~AL~l 143 (559)
|+..+..+.+|+.+.|.... ...+.-+..++.-++.+|+..+ +|++|+..|..++..
T Consensus 141 y~~i~~dL~~A~~~L~~~~~~~~~~~~~~~~r~~k~aA~al~ar~~L~~~~~~~~~~~~A~~~~~~vi~~ 210 (359)
T cd08977 141 YTQILADLDEAIALLPEASSAQDFYIYFGDGRAWKKAARALLARVYLYLANYTAADYAEALTAAEKSFKG 210 (359)
T ss_pred HHHHHHHHHHHHHhccccccccccccccCcchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhc
Confidence 45556667888877765432 1344556677888899999998 899999999999864
No 484
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=30.81 E-value=2.3e+02 Score=24.56 Aligned_cols=34 Identities=21% Similarity=0.103 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613 67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKN 100 (559)
Q Consensus 67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l 100 (559)
..+.+......|-..+..|+|..|.+...++-+.
T Consensus 55 r~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~ 88 (108)
T PF07219_consen 55 RRRKAQRALSRGLIALAEGDWQRAEKLLAKAAKL 88 (108)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4556788888999999999999999999999765
No 485
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=30.61 E-value=4.1e+02 Score=31.58 Aligned_cols=103 Identities=17% Similarity=0.116 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHHc
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT-------KQYDECIKVGSEVLAY 143 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylkl-------g~y~eAi~~~~~AL~l 143 (559)
-..+..-|..+-..|+|++||.+|..|-+++.. ...+...++.+.... .+...-+.-....++-
T Consensus 622 ~~i~~~vA~~a~~~G~~~~sI~LY~lag~yd~a---------l~link~LS~~l~~~~~~~~n~erl~~La~~~~~~y~~ 692 (835)
T KOG2168|consen 622 QKIILEVASEADEDGLFEDAILLYHLAGDYDKA---------LELINKLLSQVLHSPTLGQSNKERLGDLALSMNDIYES 692 (835)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhhHH---------HHHHHHHHHHHHhhcccCCcchhhHHHHHHHHHHHHHh
Confidence 344555677788888899988888776554221 111222333333222 1122222223333333
Q ss_pred CCCCHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008613 144 DAKNVKA----------LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT 183 (559)
Q Consensus 144 dP~~~ka----------l~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~ 183 (559)
+|..+.. .+....-++..++|++|+..++.. .+-|.++.
T Consensus 693 ~~~~~~~~~~~t~~lLl~~~~~f~~y~~~~~e~aL~~le~l-~LiP~~~~ 741 (835)
T KOG2168|consen 693 NKGDSAKVVVKTLSLLLDLVSFFDLYHNGEWEEALSILEHL-DLIPLDPL 741 (835)
T ss_pred ccCcchhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-hccCCChh
Confidence 4433211 122334456778999999988854 45565543
No 486
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=29.54 E-value=2.6e+02 Score=24.16 Aligned_cols=47 Identities=11% Similarity=0.055 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 008613 116 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIG 162 (559)
Q Consensus 116 ~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg 162 (559)
.....|.+.+..|+|..|.+...++-+..+...-.|..-+.+-...|
T Consensus 61 ~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 61 RALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 33445555556666666666666665554444444444444444433
No 487
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=28.79 E-value=1.5e+02 Score=24.53 Aligned_cols=33 Identities=18% Similarity=0.355 Sum_probs=13.3
Q ss_pred HHHhhhhhHHHHHHHHhcCchHHHHHHHHHHHH
Q 008613 517 RVQRGVQGVKKTKNWLLGKPGMILAICMLILAV 549 (559)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 549 (559)
..++.....++-.-|-.-+..++++++++++++
T Consensus 49 ~F~k~a~~l~r~~~~~~~k~~~i~~~iv~~~~~ 81 (89)
T PF00957_consen 49 QFKKNAKKLKRKMWWRNYKLYIIIIIIVIIIIL 81 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhh
Confidence 333333344444433333444444444444333
No 488
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=28.46 E-value=8.2e+02 Score=34.09 Aligned_cols=137 Identities=12% Similarity=-0.008 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhH----HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CCCchhhhhHHHHHHHHHHHHHHc
Q 008613 53 IATMRARIDAQMN----YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQG-IHSSEGRTLLLACSLNSMSCYLKT 127 (559)
Q Consensus 53 ~~aa~~~l~~~~~----~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~-~~~~e~~~l~~~~~~nlA~~ylkl 127 (559)
...+.+++-+-.. ..-+....+++...||+... ..+..+++.... +-.+=.....+..+.-+|..+.++
T Consensus 2752 ~~vcl~~L~~iytlp~veiqdaF~K~req~~c~l~~~------~e~~~gLevi~sTNl~yF~~~q~aeff~lkG~f~~kL 2825 (3550)
T KOG0889|consen 2752 PDVCLNQLAKIYTLPNVEIQDAFQKLREQAKCYLQNK------NELKTGLEVIESTNLMYFSDRQKAEFFTLKGMFLEKL 2825 (3550)
T ss_pred hHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcCh------HHHHHHHHHHhcccHHHHhhHHHHHHHHhhhHHHHHh
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008613 128 KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKD--------IGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM 196 (559)
Q Consensus 128 g~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~--------lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~ 196 (559)
+++++|-..|..|+.++-.-+++|+.-|.-+.. .---..|+.+|-+|.... .+..++..|..+...+.
T Consensus 2826 ~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~-~~skaRk~iakvLwLls 2901 (3550)
T KOG0889|consen 2826 GKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLY-NSSKARKLIAKVLWLLS 2901 (3550)
T ss_pred cCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccc-cchhhHHHHHHHHHHHH
No 489
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=28.18 E-value=9.4e+02 Score=27.44 Aligned_cols=72 Identities=11% Similarity=0.025 Sum_probs=56.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC-CHHHHHHHHHHHHH
Q 008613 123 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV--SPD-DGTIADVLRDAKEI 194 (559)
Q Consensus 123 ~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l--~P~-~~~a~~~L~~a~~~ 194 (559)
-|...+++.-|.+.|+-.|+..++.+...+.--.-+..+++...|...|++++.. .|+ ...+|...-+-+..
T Consensus 410 Ey~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~ 484 (656)
T KOG1914|consen 410 EYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESN 484 (656)
T ss_pred HHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHh
Confidence 3556899999999999999999999998888888889999999999999999986 443 23466554443333
No 490
>PF14842 FliG_N: FliG N-terminal domain; PDB: 3HJL_A 3AJC_A 3USY_B.
Probab=27.84 E-value=1.4e+02 Score=25.91 Aligned_cols=59 Identities=15% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCHHHHHHHHHH--------HHHHHhhhhhHHHHHHHHhc
Q 008613 463 QMFSSMVKNMSPEMMANMSEQFGIKLSREDTEKFQQTMSSLSLNDLDRMMLW--------ADRVQRGVQGVKKTKNWLLG 534 (559)
Q Consensus 463 ~m~~~mmk~m~p~~~~~m~~~~g~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 534 (559)
+-+...+|+|+|+.+..++.. --.|.++++++++..+.= ..-+..+.++++++..-.+|
T Consensus 21 e~Aa~vlk~l~~~ei~~i~~~-------------ma~l~~v~~~~~~~Vl~EF~~~~~~~~~~~~gg~~~~~~lL~~alg 87 (108)
T PF14842_consen 21 EAAAEVLKHLDEEEIERISRE-------------MAKLGSVSPEEVEEVLEEFYDEIRAQGGIVSGGRDFARRLLEKALG 87 (108)
T ss_dssp HHHHHHHHHS-HHHHHHHHHH-------------HHT-----HHHHHHHHHHHHHHHHHTT---S-HHHHHHH-HHHHS-
T ss_pred HHHHHHHccCCHHHHHHHHHH-------------HHccCCCCHHHHHHHHHHHHHHHHHccccccChHHHHHHHHHHHCC
No 491
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=27.47 E-value=7.5e+02 Score=26.10 Aligned_cols=28 Identities=25% Similarity=0.298 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008613 149 KALYRRGQAYKDIGRLEEAVSDLSNAHE 176 (559)
Q Consensus 149 kal~~rG~A~~~lg~~eeAi~dlekAl~ 176 (559)
.++|+.|.++...++|-++|..|+.|..
T Consensus 256 ~A~y~~a~~~~e~~k~GeaIa~L~~A~~ 283 (346)
T cd09240 256 LAEYHQSLVAKAQKKFGEEIARLQHALE 283 (346)
T ss_pred HHHHHHHHHhhhhchHHHHHHHHHHHHH
Confidence 4677778888888889999998887766
No 492
>COG3716 ManZ Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism]
Probab=26.94 E-value=62 Score=32.98 Aligned_cols=54 Identities=19% Similarity=0.278 Sum_probs=33.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCch--HHHHHHHHHHHHHHHHhccc
Q 008613 491 EDTEKFQQTMSSLSLNDLDRMMLWADRVQRGVQGVKKTKNWLLGKPG--MILAICMLILAVILHRLGFI 557 (559)
Q Consensus 491 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~l~~~~~~ 557 (559)
+.....|+.+.+|=|.-|--+.- -..=||++|+. +.+=+.++++.+|.+|||++
T Consensus 214 ~~~~~~Q~~LD~i~Pgllpl~~t-------------~~~~wLl~Kkv~p~~iI~~~~vigIvg~~lGil 269 (269)
T COG3716 214 KVVATVQDILDKIFPGLLPLLLT-------------LLMYWLLRKKVNPTWLILGTFVLGIVGSALGIL 269 (269)
T ss_pred ceeehHHHHHHHHhhhHHHHHHH-------------HHHHHHHccCCchHHHHHHHHHHHHHHHHhccC
Confidence 44555677777666655543221 14568888554 33444556778999999974
No 493
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.75 E-value=7.6e+02 Score=27.05 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHH
Q 008613 296 PDMFKAVSIMINKMSPEELQR 316 (559)
Q Consensus 296 pdm~k~as~m~~~mspeel~~ 316 (559)
..-+|+..-||-+|+++||+.
T Consensus 367 ~~~~krm~~mmDsMt~~Elds 387 (483)
T KOG0780|consen 367 SAKLKRMMTMMDSMTDEELDS 387 (483)
T ss_pred HHHHHHHHHHHHhcChhhccC
Confidence 335788999999999999983
No 494
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.51 E-value=94 Score=32.37 Aligned_cols=53 Identities=23% Similarity=0.321 Sum_probs=0.0
Q ss_pred HHHHHHHHH----HHHHHhhhhhHHHHHHHHhc-CchHHHHHHHHHHHHHHHHhcccC
Q 008613 506 NDLDRMMLW----ADRVQRGVQGVKKTKNWLLG-KPGMILAICMLILAVILHRLGFIG 558 (559)
Q Consensus 506 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~l~~~~~~~ 558 (559)
|.+|+.-.- .+.+.+|..-.++|+.+-.. +++.+++|+++|+.+|+-.++.++
T Consensus 234 Emvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK~k~i~ii~~iii~~v~v~~i~~ 291 (297)
T KOG0810|consen 234 EMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARKWKIIIIIILIIIIVVLVVVIVV 291 (297)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhceeeeehHHHHHHHHHhhhhcc
No 495
>PRK10404 hypothetical protein; Provisional
Probab=26.50 E-value=4.3e+02 Score=22.92 Aligned_cols=65 Identities=12% Similarity=0.115 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHhccCCHHHHHHHHHHHHHHHh-hhhhHHHHHHHHhcCchHHHHHHHHHHHHHHHHh
Q 008613 489 SREDTEKFQQTMSSLSLNDLDRMMLWADRVQR-GVQGVKKTKNWLLGKPGMILAICMLILAVILHRL 554 (559)
Q Consensus 489 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~ 554 (559)
+.+.++.+.....+.=.+.-+++-.+.+.++. +-+.+..|-.|+.-+|+-.++|... +-|||.+|
T Consensus 32 a~e~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~k~aa~~td~yV~e~Pw~avGiaag-vGlllG~L 97 (101)
T PRK10404 32 ADQKYVELKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHEKPWQGIGVGAA-VGLVLGLL 97 (101)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH-HHHHHHHH
Confidence 66667666666555444555566666665544 4667778899999999876666544 44444443
No 496
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=26.47 E-value=1.4e+02 Score=19.37 Aligned_cols=27 Identities=11% Similarity=0.096 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHc----CCHHHHHHHHHHHHH
Q 008613 116 CSLNSMSCYLKT----KQYDECIKVGSEVLA 142 (559)
Q Consensus 116 ~~~nlA~~ylkl----g~y~eAi~~~~~AL~ 142 (559)
..+++|.+|... .++.+|+..++++.+
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 456666666543 256666666666654
No 497
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=26.40 E-value=8.2e+02 Score=26.18 Aligned_cols=28 Identities=29% Similarity=0.386 Sum_probs=21.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008613 152 YRRGQAYKDIGRLEEAVSDLSNAHEVSP 179 (559)
Q Consensus 152 ~~rG~A~~~lg~~eeAi~dlekAl~l~P 179 (559)
.|++.|-.++|+..||++.++...+-.|
T Consensus 279 RRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 279 RRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 4567777888888888888877766555
No 498
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=26.26 E-value=1e+02 Score=32.99 Aligned_cols=58 Identities=16% Similarity=0.158 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008613 116 CSLNSMSCYLKTKQYDECIKVGSEVLAYDA--------KNVKALYRRGQAYKDIGRLEEAVSDLSN 173 (559)
Q Consensus 116 ~~~nlA~~ylklg~y~eAi~~~~~AL~ldP--------~~~kal~~rG~A~~~lg~~eeAi~dlek 173 (559)
-+...|+-++..++|++|+..|..|..+.- ++..++|..|.+++.+.+++..+...-.
T Consensus 43 ~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~nal 108 (400)
T KOG4563|consen 43 ELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGNAL 108 (400)
T ss_pred HHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 445677888889999999999999987642 4568999999999999999998876643
No 499
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=26.15 E-value=1.6e+02 Score=18.79 Aligned_cols=27 Identities=11% Similarity=0.049 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008613 116 CSLNSMSCYLKTKQYDECIKVGSEVLA 142 (559)
Q Consensus 116 ~~~nlA~~ylklg~y~eAi~~~~~AL~ 142 (559)
.|..+-.+|.+.|+++.|...++.-.+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 566677888888888888888877654
No 500
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=26.11 E-value=5.1e+02 Score=34.49 Aligned_cols=88 Identities=11% Similarity=0.027 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Q 008613 87 FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEE 166 (559)
Q Consensus 87 y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~ee 166 (559)
..+=|-.+++++-.....+ ....-...||.+.|.+.++.|+++.|-...-.|.+.. -+.++..+|..+-..|+...
T Consensus 1645 ~~epILa~RRs~l~~~~~~--~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~ 1720 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRS--NLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELN 1720 (2382)
T ss_pred HHhHHHHHHHHHHHHhccc--cccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHH
Confidence 4445555666554332221 1244567799999999999999999999999998776 68899999999999999999
Q ss_pred HHHHHHHHHHhC
Q 008613 167 AVSDLSNAHEVS 178 (559)
Q Consensus 167 Ai~dlekAl~l~ 178 (559)
|+..+++.+.++
T Consensus 1721 Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1721 ALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHhh
Confidence 999999999764
Done!