Query 008613
Match_columns 559
No_of_seqs 390 out of 2655
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 07:38:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008613.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008613hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gco_A Protein STI-1; structur 99.8 1E-19 3.5E-24 161.7 16.7 115 68-191 10-124 (126)
2 2hr2_A Hypothetical protein; a 99.8 7.1E-19 2.4E-23 163.5 11.5 130 68-197 8-151 (159)
3 3rkv_A Putative peptidylprolyl 99.8 3.4E-18 1.2E-22 156.5 15.3 134 67-200 7-150 (162)
4 3upv_A Heat shock protein STI1 99.7 6.7E-17 2.3E-21 141.1 14.9 117 70-195 3-125 (126)
5 4ga2_A E3 SUMO-protein ligase 99.7 5.7E-17 2E-21 147.8 14.3 135 51-194 11-146 (150)
6 4gcn_A Protein STI-1; structur 99.7 7.1E-17 2.4E-21 143.2 14.5 114 68-191 5-125 (127)
7 3gyz_A Chaperone protein IPGC; 99.7 1.8E-16 6E-21 146.1 14.4 107 67-182 32-138 (151)
8 3sz7_A HSC70 cochaperone (SGT) 99.7 4E-16 1.4E-20 142.9 15.2 121 69-198 9-131 (164)
9 2vgx_A Chaperone SYCD; alterna 99.7 4.7E-16 1.6E-20 141.7 15.2 123 67-198 17-139 (148)
10 2xcb_A PCRH, regulatory protei 99.7 7.2E-16 2.5E-20 138.3 13.1 121 67-196 14-134 (142)
11 2pl2_A Hypothetical conserved 99.7 2.6E-15 8.9E-20 144.8 17.7 188 10-207 11-210 (217)
12 2fbn_A 70 kDa peptidylprolyl i 99.7 4.3E-15 1.5E-19 140.2 18.5 135 67-201 34-175 (198)
13 2pl2_A Hypothetical conserved 99.6 2.9E-15 1E-19 144.4 17.0 156 26-209 12-178 (217)
14 4gyw_A UDP-N-acetylglucosamine 99.6 2.8E-16 9.7E-21 179.1 11.1 149 52-209 24-172 (723)
15 1p5q_A FKBP52, FK506-binding p 99.6 1.8E-15 6.3E-20 156.4 15.7 148 65-212 141-295 (336)
16 4gyw_A UDP-N-acetylglucosamine 99.6 1.8E-15 6E-20 172.5 16.5 132 69-209 7-138 (723)
17 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 3.7E-15 1.3E-19 160.7 17.7 136 65-200 262-403 (457)
18 3q49_B STIP1 homology and U bo 99.6 5.7E-15 1.9E-19 129.6 14.5 120 70-198 8-132 (137)
19 1elw_A TPR1-domain of HOP; HOP 99.6 3.9E-14 1.3E-18 119.2 15.8 115 70-193 3-117 (118)
20 3urz_A Uncharacterized protein 99.6 6.3E-14 2.1E-18 134.1 19.1 157 23-191 8-199 (208)
21 2vyi_A SGTA protein; chaperone 99.6 7E-14 2.4E-18 119.6 17.5 122 67-197 8-129 (131)
22 3vtx_A MAMA; tetratricopeptide 99.6 4.8E-15 1.6E-19 137.2 10.8 130 71-209 5-134 (184)
23 1ihg_A Cyclophilin 40; ppiase 99.6 1.5E-14 5.2E-19 152.0 15.9 133 67-199 219-358 (370)
24 3urz_A Uncharacterized protein 99.6 2.2E-14 7.4E-19 137.4 15.1 117 71-196 4-136 (208)
25 3vtx_A MAMA; tetratricopeptide 99.6 3.2E-14 1.1E-18 131.6 15.4 141 60-209 28-168 (184)
26 2h6f_A Protein farnesyltransfe 99.6 1.8E-14 6.1E-19 152.3 15.1 130 57-195 117-247 (382)
27 2lni_A Stress-induced-phosphop 99.6 3.2E-14 1.1E-18 122.9 13.7 117 70-195 15-131 (133)
28 2if4_A ATFKBP42; FKBP-like, al 99.6 3.2E-15 1.1E-19 154.8 8.2 143 67-209 175-326 (338)
29 2h6f_A Protein farnesyltransfe 99.6 9.7E-15 3.3E-19 154.4 11.9 136 65-209 91-227 (382)
30 4ga2_A E3 SUMO-protein ligase 99.6 2.3E-15 7.8E-20 137.2 5.7 115 77-200 3-117 (150)
31 2dba_A Smooth muscle cell asso 99.5 7E-14 2.4E-18 123.3 14.7 117 70-192 27-143 (148)
32 1hxi_A PEX5, peroxisome target 99.5 2.3E-14 8E-19 125.9 11.4 103 72-183 18-120 (121)
33 2xev_A YBGF; tetratricopeptide 99.5 1E-13 3.6E-18 120.1 15.2 117 72-194 3-122 (129)
34 1elr_A TPR2A-domain of HOP; HO 99.5 1.4E-13 4.9E-18 117.9 15.4 119 70-198 3-128 (131)
35 4i17_A Hypothetical protein; T 99.5 9.2E-14 3.2E-18 133.2 15.6 141 52-194 57-226 (228)
36 1a17_A Serine/threonine protei 99.5 3.3E-13 1.1E-17 121.3 18.1 116 67-191 9-124 (166)
37 4i17_A Hypothetical protein; T 99.5 1.9E-13 6.6E-18 131.0 17.2 118 71-197 42-168 (228)
38 1fch_A Peroxisomal targeting s 99.5 7.9E-13 2.7E-17 134.5 20.1 146 58-212 202-360 (368)
39 1na0_A Designed protein CTPR3; 99.5 8.4E-13 2.9E-17 111.9 16.9 116 71-195 9-124 (125)
40 1w3b_A UDP-N-acetylglucosamine 99.5 4E-13 1.4E-17 138.9 17.5 119 71-198 203-321 (388)
41 3uq3_A Heat shock protein STI1 99.5 3.2E-12 1.1E-16 122.5 21.9 152 31-191 91-256 (258)
42 3qky_A Outer membrane assembly 99.5 5.8E-13 2E-17 130.7 16.4 150 25-195 21-198 (261)
43 4eqf_A PEX5-related protein; a 99.5 6.4E-13 2.2E-17 135.9 15.8 203 7-209 68-308 (365)
44 2e2e_A Formate-dependent nitri 99.5 4.9E-13 1.7E-17 123.2 13.1 117 67-192 40-159 (177)
45 4eqf_A PEX5-related protein; a 99.5 1.1E-12 3.7E-17 134.2 17.0 135 56-199 196-344 (365)
46 3as5_A MAMA; tetratricopeptide 99.5 8.9E-13 3.1E-17 119.5 14.5 130 71-209 42-171 (186)
47 3qky_A Outer membrane assembly 99.4 5.5E-12 1.9E-16 123.7 20.4 195 7-201 18-251 (261)
48 1w3b_A UDP-N-acetylglucosamine 99.4 3.5E-13 1.2E-17 139.3 12.4 145 56-209 52-196 (388)
49 3uq3_A Heat shock protein STI1 99.4 1.7E-12 5.9E-17 124.4 16.3 157 53-209 54-234 (258)
50 1zu2_A Mitochondrial import re 99.4 2.1E-13 7.1E-18 126.5 9.1 104 83-195 14-138 (158)
51 2pzi_A Probable serine/threoni 99.4 2.1E-13 7.4E-18 154.2 11.2 127 70-206 432-558 (681)
52 2c2l_A CHIP, carboxy terminus 99.4 6.1E-13 2.1E-17 133.7 13.3 102 71-181 4-105 (281)
53 3cv0_A Peroxisome targeting si 99.4 1.5E-12 5.1E-17 129.4 16.0 149 54-211 155-315 (327)
54 2pzi_A Probable serine/threoni 99.4 4.4E-13 1.5E-17 151.6 13.4 132 53-194 449-580 (681)
55 4abn_A Tetratricopeptide repea 99.4 4E-13 1.4E-17 145.3 12.6 162 31-202 114-312 (474)
56 3ieg_A DNAJ homolog subfamily 99.4 1.6E-11 5.6E-16 123.0 23.3 122 73-199 236-357 (359)
57 2q7f_A YRRB protein; TPR, prot 99.4 2.7E-12 9.2E-17 122.4 16.4 148 53-209 73-220 (243)
58 3hym_B Cell division cycle pro 99.4 5.7E-12 2E-16 125.4 19.2 140 55-194 177-316 (330)
59 4abn_A Tetratricopeptide repea 99.4 3.3E-13 1.1E-17 146.0 10.6 149 51-209 116-285 (474)
60 3k9i_A BH0479 protein; putativ 99.4 2.2E-13 7.7E-18 117.8 7.4 106 83-194 2-107 (117)
61 1hh8_A P67PHOX, NCF-2, neutrop 99.4 8.1E-13 2.8E-17 124.6 11.5 128 70-209 5-148 (213)
62 1xnf_A Lipoprotein NLPI; TPR, 99.4 3.9E-12 1.3E-16 123.6 16.4 114 67-189 39-152 (275)
63 2q7f_A YRRB protein; TPR, prot 99.4 6.5E-12 2.2E-16 119.7 17.6 131 55-194 109-239 (243)
64 1wao_1 Serine/threonine protei 99.4 3.2E-13 1.1E-17 146.6 9.4 129 69-206 4-134 (477)
65 2vsy_A XCC0866; transferase, g 99.4 7.4E-13 2.5E-17 145.5 12.2 134 67-209 19-155 (568)
66 2vq2_A PILW, putative fimbrial 99.4 4.6E-12 1.6E-16 118.8 16.0 121 71-200 42-165 (225)
67 3hym_B Cell division cycle pro 99.4 1.8E-12 6.3E-17 129.0 13.9 145 56-209 75-220 (330)
68 3gyz_A Chaperone protein IPGC; 99.4 4.8E-14 1.6E-18 129.7 2.1 110 92-210 23-132 (151)
69 2ho1_A Type 4 fimbrial biogene 99.4 5.4E-12 1.8E-16 121.7 16.6 147 55-208 89-235 (252)
70 3qou_A Protein YBBN; thioredox 99.4 1.6E-12 5.4E-17 131.0 13.1 155 27-208 125-281 (287)
71 2yhc_A BAMD, UPF0169 lipoprote 99.4 4E-12 1.4E-16 122.7 15.3 158 28-206 13-208 (225)
72 1fch_A Peroxisomal targeting s 99.4 8.8E-12 3E-16 126.7 18.6 156 54-209 115-312 (368)
73 2vq2_A PILW, putative fimbrial 99.4 1.4E-11 4.9E-16 115.5 18.6 139 54-199 59-199 (225)
74 2kck_A TPR repeat; tetratricop 99.4 9.5E-13 3.3E-17 109.8 9.4 102 71-181 6-110 (112)
75 4gco_A Protein STI-1; structur 99.4 2.7E-13 9.3E-18 120.0 6.3 97 113-209 12-108 (126)
76 3u4t_A TPR repeat-containing p 99.4 2.3E-12 8E-17 125.5 13.2 193 8-209 7-206 (272)
77 2fo7_A Synthetic consensus TPR 99.4 2.6E-12 8.9E-17 109.7 11.8 120 72-200 2-121 (136)
78 1qqe_A Vesicular transport pro 99.4 6.9E-12 2.4E-16 126.2 16.6 139 68-209 74-226 (292)
79 3u4t_A TPR repeat-containing p 99.4 2.6E-12 9E-17 125.1 13.0 144 25-192 9-153 (272)
80 2ho1_A Type 4 fimbrial biogene 99.4 4.6E-12 1.6E-16 122.2 14.5 136 62-206 62-199 (252)
81 2y4t_A DNAJ homolog subfamily 99.4 6.1E-11 2.1E-15 124.1 22.7 123 72-199 258-380 (450)
82 2r5s_A Uncharacterized protein 99.4 1.5E-12 5E-17 120.7 8.9 156 25-208 12-170 (176)
83 2yhc_A BAMD, UPF0169 lipoprote 99.3 4.5E-12 1.6E-16 122.3 11.9 110 71-186 4-134 (225)
84 3cv0_A Peroxisome targeting si 99.3 4.3E-11 1.5E-15 118.8 18.7 202 8-209 25-267 (327)
85 1hh8_A P67PHOX, NCF-2, neutrop 99.3 1.6E-11 5.3E-16 115.7 14.7 103 71-182 37-155 (213)
86 3ieg_A DNAJ homolog subfamily 99.3 1.4E-11 4.7E-16 123.6 15.2 202 8-209 7-215 (359)
87 2l6j_A TPR repeat-containing p 99.3 5.4E-13 1.9E-17 112.2 4.0 93 71-172 4-102 (111)
88 3as5_A MAMA; tetratricopeptide 99.3 2.7E-11 9.3E-16 109.6 15.6 122 53-183 58-179 (186)
89 2fo7_A Synthetic consensus TPR 99.3 4.6E-11 1.6E-15 101.9 15.9 102 71-181 35-136 (136)
90 2vgx_A Chaperone SYCD; alterna 99.3 9.7E-13 3.3E-17 119.6 4.3 110 91-209 7-116 (148)
91 3mkr_A Coatomer subunit epsilo 99.3 1.5E-10 5E-15 117.1 20.5 118 69-197 128-249 (291)
92 1xnf_A Lipoprotein NLPI; TPR, 99.3 1.3E-10 4.3E-15 112.9 18.9 86 54-148 60-145 (275)
93 3mkr_A Coatomer subunit epsilo 99.3 9.2E-11 3.1E-15 118.5 17.9 100 79-187 174-274 (291)
94 2y4t_A DNAJ homolog subfamily 99.3 7.1E-11 2.4E-15 123.6 17.1 131 70-209 59-204 (450)
95 2kat_A Uncharacterized protein 99.3 2.1E-11 7.3E-16 104.4 10.6 101 88-197 2-104 (115)
96 2e2e_A Formate-dependent nitri 99.2 3.9E-12 1.3E-16 117.1 5.5 123 78-209 17-142 (177)
97 1qqe_A Vesicular transport pro 99.2 1.2E-10 4.2E-15 117.0 16.7 112 70-184 116-235 (292)
98 3fp2_A TPR repeat-containing p 99.2 6.7E-11 2.3E-15 126.5 15.6 146 54-209 260-405 (537)
99 3edt_B KLC 2, kinesin light ch 99.2 3.1E-11 1.1E-15 116.8 11.6 141 68-209 40-196 (283)
100 2vsy_A XCC0866; transferase, g 99.2 1E-10 3.5E-15 128.4 16.9 120 55-183 41-163 (568)
101 2xpi_A Anaphase-promoting comp 99.2 2.2E-10 7.4E-15 124.6 18.8 172 29-209 315-502 (597)
102 2l6j_A TPR repeat-containing p 99.2 9E-11 3.1E-15 98.4 12.3 94 114-207 4-103 (111)
103 2xpi_A Anaphase-promoting comp 99.2 1.4E-10 4.7E-15 126.2 16.7 132 69-209 439-577 (597)
104 2xcb_A PCRH, regulatory protei 99.2 6.1E-12 2.1E-16 112.5 4.7 109 92-209 5-113 (142)
105 1a17_A Serine/threonine protei 99.2 2.7E-10 9.1E-15 102.0 15.6 100 69-177 45-146 (166)
106 3sz7_A HSC70 cochaperone (SGT) 99.2 7.6E-11 2.6E-15 107.5 11.5 85 113-197 10-94 (164)
107 4g1t_A Interferon-induced prot 99.2 1.4E-10 4.8E-15 122.5 15.0 131 70-200 50-190 (472)
108 3edt_B KLC 2, kinesin light ch 99.2 1.9E-10 6.6E-15 111.1 14.7 109 68-177 82-198 (283)
109 2ifu_A Gamma-SNAP; membrane fu 99.2 1.2E-10 4.2E-15 117.9 13.7 136 68-207 73-220 (307)
110 4gcn_A Protein STI-1; structur 99.2 3.9E-11 1.3E-15 105.9 8.3 95 113-207 7-108 (127)
111 3fp2_A TPR repeat-containing p 99.2 7.1E-11 2.4E-15 126.3 11.9 119 55-182 294-412 (537)
112 3upv_A Heat shock protein STI1 99.2 9E-11 3.1E-15 101.8 10.0 96 114-209 4-99 (126)
113 3qou_A Protein YBBN; thioredox 99.2 4.6E-11 1.6E-15 120.2 9.2 132 69-209 115-246 (287)
114 2gw1_A Mitochondrial precursor 99.2 1E-10 3.6E-15 123.8 12.4 117 71-190 372-491 (514)
115 2hr2_A Hypothetical protein; a 99.2 5.3E-11 1.8E-15 110.5 8.7 101 114-215 11-134 (159)
116 2gw1_A Mitochondrial precursor 99.2 5.6E-10 1.9E-14 118.2 17.9 149 30-209 315-476 (514)
117 3ro3_A PINS homolog, G-protein 99.2 1.4E-10 4.8E-15 102.1 10.7 130 69-201 7-148 (164)
118 2ond_A Cleavage stimulation fa 99.1 7.6E-10 2.6E-14 111.8 16.6 147 55-209 82-230 (308)
119 1p5q_A FKBP52, FK506-binding p 99.1 2.7E-10 9.2E-15 117.5 13.5 98 70-176 195-293 (336)
120 2r5s_A Uncharacterized protein 99.1 1.7E-11 5.7E-16 113.5 3.9 129 71-209 6-135 (176)
121 3ulq_A Response regulator aspa 99.1 3.4E-10 1.2E-14 117.2 14.2 141 67-209 139-291 (383)
122 3nf1_A KLC 1, kinesin light ch 99.1 1.1E-09 3.8E-14 107.8 16.8 109 68-177 108-224 (311)
123 1hxi_A PEX5, peroxisome target 99.1 2.1E-10 7.2E-15 100.4 9.9 94 116-209 19-112 (121)
124 1na3_A Designed protein CTPR2; 99.1 6.2E-10 2.1E-14 89.9 11.8 77 116-192 11-87 (91)
125 3u3w_A Transcriptional activat 99.1 6.5E-10 2.2E-14 111.3 13.9 136 71-209 115-264 (293)
126 3ulq_A Response regulator aspa 99.1 5.7E-09 2E-13 107.9 21.3 110 67-179 180-295 (383)
127 1na3_A Designed protein CTPR2; 99.1 1.3E-09 4.3E-14 88.1 12.7 82 79-162 10-91 (91)
128 2vyi_A SGTA protein; chaperone 99.1 1.4E-09 4.7E-14 92.5 13.6 86 70-164 45-130 (131)
129 3nf1_A KLC 1, kinesin light ch 99.1 3.7E-10 1.3E-14 111.2 11.3 142 67-209 65-222 (311)
130 3gw4_A Uncharacterized protein 99.1 7.1E-10 2.4E-14 102.8 12.3 131 70-203 25-168 (203)
131 3sf4_A G-protein-signaling mod 99.1 8.8E-10 3E-14 112.8 13.5 140 67-209 183-334 (406)
132 2lni_A Stress-induced-phosphop 99.1 1.6E-09 5.5E-14 93.0 13.0 107 30-163 27-133 (133)
133 2qfc_A PLCR protein; TPR, HTH, 99.1 2.5E-09 8.5E-14 107.0 16.2 129 70-201 114-255 (293)
134 2kc7_A BFR218_protein; tetratr 99.1 2.6E-10 9E-15 94.5 7.5 67 119-185 5-72 (99)
135 2ond_A Cleavage stimulation fa 99.1 2.2E-09 7.4E-14 108.4 15.6 139 54-201 116-260 (308)
136 3u3w_A Transcriptional activat 99.0 6.7E-09 2.3E-13 103.9 18.8 107 70-178 154-267 (293)
137 2fbn_A 70 kDa peptidylprolyl i 99.0 2.1E-09 7.2E-14 100.9 13.9 137 29-176 48-185 (198)
138 4a1s_A PINS, partner of inscut 99.0 7E-10 2.4E-14 114.7 11.5 125 68-197 45-181 (411)
139 1dce_A Protein (RAB geranylger 99.0 1.4E-09 4.9E-14 120.5 14.6 124 64-196 56-192 (567)
140 1wao_1 Serine/threonine protei 99.0 2E-10 7E-15 124.4 7.4 106 67-181 36-154 (477)
141 3rkv_A Putative peptidylprolyl 99.0 1.5E-09 5.2E-14 98.5 12.0 89 67-164 59-148 (162)
142 3q15_A PSP28, response regulat 99.0 1.5E-09 5E-14 112.5 13.1 141 67-209 137-288 (378)
143 3q15_A PSP28, response regulat 99.0 3.9E-09 1.3E-13 109.3 16.3 111 67-180 178-293 (378)
144 3q49_B STIP1 homology and U bo 99.0 1.1E-09 3.6E-14 95.6 9.9 96 114-209 9-104 (137)
145 3dra_A Protein farnesyltransfe 99.0 4E-09 1.4E-13 108.1 15.7 136 35-197 49-195 (306)
146 3ma5_A Tetratricopeptide repea 99.0 1.4E-09 4.7E-14 91.6 10.2 81 115-195 8-90 (100)
147 3ro3_A PINS homolog, G-protein 99.0 6.5E-09 2.2E-13 91.2 14.8 108 70-180 48-161 (164)
148 4a1s_A PINS, partner of inscut 99.0 7.8E-10 2.7E-14 114.4 10.2 140 67-209 122-290 (411)
149 2if4_A ATFKBP42; FKBP-like, al 99.0 5.2E-10 1.8E-14 115.5 8.6 143 30-183 190-334 (338)
150 2kck_A TPR repeat; tetratricop 99.0 3.8E-10 1.3E-14 93.7 6.2 88 116-203 8-98 (112)
151 3ro2_A PINS homolog, G-protein 99.0 2E-09 6.8E-14 106.1 12.3 139 67-208 179-329 (338)
152 3sf4_A G-protein-signaling mod 99.0 1.2E-09 4.2E-14 111.7 11.0 140 67-209 83-254 (406)
153 3ro2_A PINS homolog, G-protein 99.0 1.9E-09 6.4E-14 106.3 11.7 139 67-208 79-249 (338)
154 2c2l_A CHIP, carboxy terminus 99.0 1.1E-09 3.9E-14 109.7 10.2 140 29-195 14-182 (281)
155 2ifu_A Gamma-SNAP; membrane fu 99.0 2.5E-09 8.5E-14 108.2 12.6 109 69-182 114-228 (307)
156 1kt0_A FKBP51, 51 kDa FK506-bi 99.0 1.6E-09 5.5E-14 116.5 11.5 92 70-170 316-407 (457)
157 4f3v_A ESX-1 secretion system 99.0 2.7E-09 9.3E-14 107.9 12.2 112 71-191 136-250 (282)
158 1zu2_A Mitochondrial import re 99.0 8.1E-10 2.8E-14 102.3 7.7 85 55-148 20-125 (158)
159 3dra_A Protein farnesyltransfe 99.0 1.1E-08 3.7E-13 104.8 16.7 171 18-197 47-235 (306)
160 3k9i_A BH0479 protein; putativ 99.0 1.6E-09 5.3E-14 93.3 8.8 84 67-159 23-106 (117)
161 1ouv_A Conserved hypothetical 99.0 3.5E-09 1.2E-13 104.0 12.4 124 54-194 23-158 (273)
162 2kc7_A BFR218_protein; tetratr 98.9 4.3E-09 1.5E-13 87.0 10.7 79 94-182 16-95 (99)
163 1na0_A Designed protein CTPR3; 98.9 1.8E-08 6.1E-13 84.8 14.7 83 71-162 43-125 (125)
164 1elw_A TPR1-domain of HOP; HOP 98.9 1.5E-08 5E-13 84.6 14.0 103 30-159 15-117 (118)
165 1ouv_A Conserved hypothetical 98.9 1.5E-08 5.2E-13 99.4 16.1 125 53-194 58-194 (273)
166 1ihg_A Cyclophilin 40; ppiase 98.9 7.9E-09 2.7E-13 108.3 14.1 96 66-170 268-363 (370)
167 4g1t_A Interferon-induced prot 98.9 1.8E-08 6.1E-13 106.3 16.5 135 52-195 153-294 (472)
168 1dce_A Protein (RAB geranylger 98.9 4.6E-09 1.6E-13 116.4 11.9 134 55-197 91-241 (567)
169 3gw4_A Uncharacterized protein 98.9 6.3E-08 2.2E-12 89.5 17.8 112 66-179 61-178 (203)
170 3dss_A Geranylgeranyl transfer 98.9 5.3E-08 1.8E-12 100.7 19.0 134 36-196 47-193 (331)
171 2xev_A YBGF; tetratricopeptide 98.9 4.5E-09 1.5E-13 90.5 9.0 94 116-209 4-103 (129)
172 2qfc_A PLCR protein; TPR, HTH, 98.9 3.1E-08 1.1E-12 99.0 15.5 139 68-209 72-223 (293)
173 3n71_A Histone lysine methyltr 98.9 1.4E-08 4.8E-13 110.6 13.6 130 70-200 308-453 (490)
174 2dba_A Smooth muscle cell asso 98.8 7.1E-08 2.4E-12 84.3 14.7 108 28-159 37-144 (148)
175 1hz4_A MALT regulatory protein 98.8 5.9E-08 2E-12 99.4 16.3 126 71-199 53-191 (373)
176 3rjv_A Putative SEL1 repeat pr 98.8 3.9E-08 1.3E-12 94.1 13.5 112 70-194 49-174 (212)
177 3dss_A Geranylgeranyl transfer 98.8 1.4E-07 4.8E-12 97.6 18.0 168 18-194 44-239 (331)
178 3q7a_A Farnesyltransferase alp 98.8 3.3E-08 1.1E-12 102.9 12.8 136 35-197 70-216 (349)
179 1pc2_A Mitochondria fission pr 98.8 4E-08 1.4E-12 90.2 11.6 103 87-198 14-121 (152)
180 3ma5_A Tetratricopeptide repea 98.8 1.9E-08 6.5E-13 84.5 8.8 81 70-159 6-88 (100)
181 2ooe_A Cleavage stimulation fa 98.8 5.9E-08 2E-12 105.2 14.9 146 56-209 305-452 (530)
182 2kat_A Uncharacterized protein 98.8 2E-08 6.9E-13 85.6 8.9 84 70-162 18-103 (115)
183 1elr_A TPR2A-domain of HOP; HO 98.8 1.4E-08 4.8E-13 86.3 7.7 96 114-209 4-106 (131)
184 3q7a_A Farnesyltransferase alp 98.7 3.7E-08 1.3E-12 102.6 11.8 170 18-197 68-257 (349)
185 3rjv_A Putative SEL1 repeat pr 98.7 1.6E-07 5.6E-12 89.7 15.2 113 70-192 84-210 (212)
186 3qww_A SET and MYND domain-con 98.7 2.2E-07 7.4E-12 99.7 16.8 116 74-190 301-429 (433)
187 3qwp_A SET and MYND domain-con 98.7 2.3E-07 7.7E-12 99.4 14.8 119 72-191 288-419 (429)
188 2ooe_A Cleavage stimulation fa 98.6 2E-07 6.8E-12 101.1 12.8 135 55-198 339-479 (530)
189 3n71_A Histone lysine methyltr 98.6 3E-07 1E-11 100.1 13.7 112 66-178 346-465 (490)
190 2v5f_A Prolyl 4-hydroxylase su 98.6 4.1E-07 1.4E-11 77.4 11.5 83 71-155 5-87 (104)
191 1klx_A Cysteine rich protein B 98.6 6.2E-07 2.1E-11 80.1 13.0 98 77-189 31-136 (138)
192 2v5f_A Prolyl 4-hydroxylase su 98.5 7.2E-07 2.4E-11 75.9 12.0 84 114-197 5-95 (104)
193 3bee_A Putative YFRE protein; 98.5 4.3E-07 1.5E-11 76.3 9.9 68 115-182 7-77 (93)
194 4f3v_A ESX-1 secretion system 98.5 6.8E-08 2.3E-12 97.7 5.8 130 71-210 102-236 (282)
195 1hz4_A MALT regulatory protein 98.5 5E-07 1.7E-11 92.4 10.8 132 71-206 14-159 (373)
196 4b4t_Q 26S proteasome regulato 98.4 3.5E-06 1.2E-10 87.5 16.2 105 72-179 96-206 (434)
197 2xm6_A Protein corresponding t 98.4 5E-06 1.7E-10 89.1 16.9 110 70-194 74-195 (490)
198 2xm6_A Protein corresponding t 98.4 6.2E-06 2.1E-10 88.3 17.7 108 71-191 328-449 (490)
199 3e4b_A ALGK; tetratricopeptide 98.4 5.6E-06 1.9E-10 88.5 16.1 120 56-193 198-329 (452)
200 1pc2_A Mitochondria fission pr 98.3 1.2E-06 4.2E-11 80.2 8.7 99 50-156 11-113 (152)
201 1xi4_A Clathrin heavy chain; a 98.3 2.5E-05 8.5E-10 93.1 20.0 103 58-174 1090-1221(1630)
202 1nzn_A CGI-135 protein, fissio 98.3 6.2E-06 2.1E-10 73.1 11.0 102 87-197 17-123 (126)
203 4b4t_Q 26S proteasome regulato 98.2 8.3E-06 2.8E-10 84.7 13.8 133 71-206 55-199 (434)
204 3mv2_B Coatomer subunit epsilo 98.2 1.4E-05 4.8E-10 81.7 13.9 106 70-187 175-292 (310)
205 1xi4_A Clathrin heavy chain; a 98.2 6.2E-05 2.1E-09 89.8 20.6 173 16-195 981-1180(1630)
206 3e4b_A ALGK; tetratricopeptide 98.2 7E-06 2.4E-10 87.8 11.7 108 72-193 177-294 (452)
207 1klx_A Cysteine rich protein B 98.2 3.9E-06 1.3E-10 74.9 7.9 93 85-194 9-105 (138)
208 3ly7_A Transcriptional activat 98.0 3.8E-05 1.3E-09 80.2 13.3 68 115-183 278-345 (372)
209 1b89_A Protein (clathrin heavy 98.0 1.2E-05 4.2E-10 86.0 8.9 105 72-195 123-254 (449)
210 3bee_A Putative YFRE protein; 98.0 2.5E-05 8.4E-10 65.4 8.3 68 71-147 6-76 (93)
211 3u64_A Protein TP_0956; tetrat 97.9 1.7E-05 5.9E-10 80.0 8.5 87 87-180 179-272 (301)
212 3qwp_A SET and MYND domain-con 97.8 0.00012 4.1E-09 78.2 12.4 93 67-160 325-425 (429)
213 3o48_A Mitochondria fission 1 97.8 0.00015 5.2E-09 64.6 10.9 85 114-198 40-128 (134)
214 3mv2_B Coatomer subunit epsilo 97.8 0.00023 7.9E-09 72.7 13.9 136 53-196 116-269 (310)
215 3qww_A SET and MYND domain-con 97.8 0.00012 4.2E-09 78.3 11.7 84 66-150 335-423 (433)
216 3ffl_A Anaphase-promoting comp 97.7 0.00041 1.4E-08 64.1 12.8 119 72-191 21-164 (167)
217 1y8m_A FIS1; mitochondria, unk 97.7 0.00044 1.5E-08 62.3 12.0 85 114-198 39-127 (144)
218 3ly7_A Transcriptional activat 97.7 9.8E-05 3.3E-09 77.1 8.8 128 72-209 197-337 (372)
219 1nzn_A CGI-135 protein, fissio 97.6 0.00026 9.1E-09 62.6 9.5 101 50-157 14-117 (126)
220 3o48_A Mitochondria fission 1 97.5 0.00086 3E-08 59.7 12.1 101 49-158 19-122 (134)
221 1y8m_A FIS1; mitochondria, unk 97.4 0.0014 4.9E-08 59.0 12.2 99 50-157 19-120 (144)
222 2ff4_A Probable regulatory pro 97.2 0.0061 2.1E-07 63.9 15.8 107 70-176 114-233 (388)
223 1b89_A Protein (clathrin heavy 96.9 0.00055 1.9E-08 73.2 4.5 125 67-198 144-298 (449)
224 4h7y_A Dual specificity protei 96.9 0.012 4.1E-07 53.5 12.5 112 71-184 13-130 (161)
225 4e6h_A MRNA 3'-END-processing 96.9 0.013 4.4E-07 66.1 15.4 119 70-196 433-555 (679)
226 3ffl_A Anaphase-promoting comp 96.7 0.0071 2.4E-07 55.9 9.9 88 70-158 62-165 (167)
227 3u64_A Protein TP_0956; tetrat 96.6 0.007 2.4E-07 61.0 9.3 115 23-146 137-272 (301)
228 4e6h_A MRNA 3'-END-processing 96.5 0.0085 2.9E-07 67.5 10.3 149 60-208 367-530 (679)
229 3txn_A 26S proteasome regulato 95.4 0.7 2.4E-05 48.4 18.7 100 76-178 104-211 (394)
230 2uy1_A Cleavage stimulation fa 95.3 0.41 1.4E-05 51.5 16.8 121 68-190 210-362 (493)
231 4b4t_R RPN7, 26S proteasome re 94.9 0.16 5.6E-06 53.7 12.1 103 71-179 131-239 (429)
232 1ya0_A SMG-7 transcript varian 93.8 0.28 9.4E-06 53.1 11.0 82 114-195 152-233 (497)
233 3kae_A CDC27, possible protein 93.2 0.61 2.1E-05 43.2 10.5 102 71-186 33-152 (242)
234 4gns_B Protein CSD3, chitin bi 92.4 0.34 1.1E-05 55.0 9.4 59 116-174 339-397 (754)
235 4b4t_P 26S proteasome regulato 92.0 2.8 9.5E-05 44.4 15.6 105 70-177 136-247 (445)
236 4gns_B Protein CSD3, chitin bi 91.4 0.53 1.8E-05 53.4 9.5 61 71-140 337-397 (754)
237 4g26_A Pentatricopeptide repea 91.1 1.9 6.4E-05 46.4 13.3 111 71-190 105-218 (501)
238 1ya0_A SMG-7 transcript varian 91.0 0.95 3.2E-05 48.9 10.7 80 73-161 154-233 (497)
239 2uy1_A Cleavage stimulation fa 90.9 1.6 5.5E-05 46.8 12.4 112 72-197 287-399 (493)
240 2ff4_A Probable regulatory pro 90.1 3.2 0.00011 43.0 13.5 63 71-142 171-233 (388)
241 1zbp_A Hypothetical protein VP 90.1 1.2 4.3E-05 44.0 9.7 69 123-191 6-74 (273)
242 3mkq_A Coatomer beta'-subunit; 89.7 5.3 0.00018 44.2 15.9 29 70-98 680-708 (814)
243 1zbp_A Hypothetical protein VP 89.7 2.4 8.1E-05 42.0 11.3 63 79-150 5-67 (273)
244 4g26_A Pentatricopeptide repea 88.0 7.9 0.00027 41.4 15.2 96 87-191 86-184 (501)
245 2lnm_A Protein TIC 40, chlorop 87.8 0.55 1.9E-05 35.9 4.2 20 451-470 36-55 (62)
246 2llw_A Heat shock protein STI1 87.6 0.27 9.2E-06 38.8 2.4 20 451-470 44-63 (71)
247 4b4t_S RPN3, 26S proteasome re 87.5 1.4 4.7E-05 47.7 8.6 69 112-182 229-304 (523)
248 4fhn_B Nucleoporin NUP120; pro 87.5 1.4 4.9E-05 52.3 9.7 102 73-174 844-964 (1139)
249 3txn_A 26S proteasome regulato 86.7 12 0.0004 39.1 15.0 81 116-196 101-190 (394)
250 3mv2_A Coatomer subunit alpha; 84.3 7.7 0.00026 39.3 11.7 116 71-186 114-245 (325)
251 1qsa_A Protein (soluble lytic 84.1 4.1 0.00014 45.1 10.6 91 76-176 257-347 (618)
252 2wpv_A GET4, UPF0363 protein Y 84.0 28 0.00095 35.0 15.8 27 146-172 132-158 (312)
253 3mkr_B Coatomer subunit alpha; 83.7 10 0.00034 38.4 12.2 113 70-182 101-232 (320)
254 3mkq_B Coatomer subunit alpha; 82.8 29 0.00099 32.0 14.1 83 70-174 33-115 (177)
255 3t5v_B Nuclear mRNA export pro 82.2 8.1 0.00028 41.1 11.5 97 85-181 140-254 (455)
256 3mkq_A Coatomer beta'-subunit; 80.2 18 0.00061 39.9 14.1 49 78-140 659-707 (814)
257 4h7y_A Dual specificity protei 78.8 12 0.00042 33.9 9.7 69 71-149 61-129 (161)
258 3lpz_A GET4 (YOR164C homolog); 75.4 74 0.0025 32.3 16.2 33 68-100 32-65 (336)
259 2llw_A Heat shock protein STI1 74.0 6.4 0.00022 30.8 5.7 41 451-499 21-61 (71)
260 3spa_A Mtrpol, DNA-directed RN 73.3 35 0.0012 40.1 13.9 100 71-177 127-230 (1134)
261 2w2u_A Hypothetical P60 katani 72.8 5.4 0.00019 32.1 5.2 33 68-100 16-48 (83)
262 4a5x_A MITD1, MIT domain-conta 72.7 19 0.00066 29.0 8.6 31 70-100 15-45 (86)
263 1wfd_A Hypothetical protein 15 72.3 21 0.00073 29.1 8.9 31 70-100 14-44 (93)
264 2v6y_A AAA family ATPase, P60 72.2 5.7 0.00019 31.9 5.2 32 69-100 9-40 (83)
265 2cpt_A SKD1 protein, vacuolar 71.1 24 0.00083 30.2 9.3 25 74-98 21-45 (117)
266 3lpz_A GET4 (YOR164C homolog); 70.0 98 0.0034 31.4 17.0 132 23-171 16-159 (336)
267 4b4t_S RPN3, 26S proteasome re 68.5 33 0.0011 37.0 11.7 114 70-191 269-387 (523)
268 2vkj_A TM1634; membrane protei 67.3 23 0.00079 28.9 7.7 33 69-101 51-83 (106)
269 3kae_A CDC27, possible protein 66.3 44 0.0015 31.0 10.3 80 68-148 59-148 (242)
270 2crb_A Nuclear receptor bindin 64.9 8.9 0.0003 31.6 4.8 26 149-174 16-41 (97)
271 4b4t_R RPN7, 26S proteasome re 64.9 21 0.00071 37.3 9.2 76 116-191 133-213 (429)
272 2v6x_A Vacuolar protein sortin 63.4 11 0.00037 30.2 5.2 31 70-100 12-42 (85)
273 3mkq_B Coatomer subunit alpha; 63.1 17 0.00057 33.6 7.1 46 124-174 15-60 (177)
274 2crb_A Nuclear receptor bindin 61.9 14 0.00047 30.5 5.4 31 70-100 14-44 (97)
275 1wy6_A Hypothetical protein ST 60.3 41 0.0014 30.1 8.7 61 117-177 93-154 (172)
276 3hd7_B Syntaxin-1A; membrane p 60.0 18 0.00062 30.5 6.3 38 515-552 62-101 (109)
277 4b4t_P 26S proteasome regulato 58.8 54 0.0018 34.4 11.2 74 67-143 173-247 (445)
278 3ax2_A Mitochondrial import re 58.8 20 0.0007 28.1 5.8 38 153-190 22-59 (73)
279 4gq2_M Nucleoporin NUP120; bet 58.2 27 0.00093 40.5 9.5 73 71-143 840-926 (950)
280 1p58_D Envelope protein M; fla 57.7 10 0.00034 30.1 3.9 22 522-543 26-47 (75)
281 2ijq_A Hypothetical protein; s 57.6 49 0.0017 30.0 9.1 71 72-143 33-104 (161)
282 4fhn_B Nucleoporin NUP120; pro 56.5 39 0.0013 39.9 10.6 94 77-183 818-935 (1139)
283 2v6y_A AAA family ATPase, P60 55.9 50 0.0017 26.2 8.0 17 125-141 22-38 (83)
284 2w2u_A Hypothetical P60 katani 54.8 50 0.0017 26.3 7.8 21 121-141 26-46 (83)
285 4a5x_A MITD1, MIT domain-conta 54.8 71 0.0024 25.6 8.7 23 119-141 21-43 (86)
286 3qnk_A Putative lipoprotein; a 54.0 55 0.0019 34.9 10.5 48 130-177 153-211 (517)
287 3hd7_A Vesicle-associated memb 53.8 24 0.00083 28.7 5.8 28 505-532 32-59 (91)
288 3lxu_X Tripeptidyl-peptidase 2 52.5 97 0.0033 37.3 12.8 86 109-195 1236-1330(1354)
289 1wfd_A Hypothetical protein 15 52.2 71 0.0024 25.9 8.5 18 124-141 25-42 (93)
290 2cwy_A Hypothetical protein TT 51.7 49 0.0017 27.0 7.4 62 76-142 6-67 (94)
291 3i4g_A SUSD-like carbohydrate 51.3 64 0.0022 34.6 10.4 47 130-176 167-226 (528)
292 2lnm_A Protein TIC 40, chlorop 50.4 9.3 0.00032 28.9 2.5 42 451-500 13-54 (62)
293 3hdx_A SUSD homolog, SUSD supe 50.0 48 0.0016 35.0 9.0 48 130-177 156-226 (478)
294 4gq2_M Nucleoporin NUP120; bet 48.8 58 0.002 37.7 10.2 97 77-186 816-936 (950)
295 2cpt_A SKD1 protein, vacuolar 48.2 86 0.0029 26.7 8.7 17 125-141 29-45 (117)
296 2v6x_A Vacuolar protein sortin 47.5 97 0.0033 24.4 8.5 17 125-141 24-40 (85)
297 2yin_A DOCK2, dedicator of cyt 47.2 36 0.0012 35.8 7.4 73 71-143 35-121 (436)
298 2llv_A Heat shock protein STI1 47.1 17 0.00057 28.3 3.6 19 451-469 47-66 (71)
299 4b4t_O 26S proteasome regulato 46.4 1.7E+02 0.0057 30.0 12.3 99 78-176 83-197 (393)
300 3esl_A Checkpoint serine/threo 46.3 1.9E+02 0.0065 27.1 14.0 103 92-195 58-163 (202)
301 3ax2_A Mitochondrial import re 46.2 24 0.00083 27.7 4.4 30 75-104 21-50 (73)
302 3j27_B Matrix protein, small e 44.2 20 0.00069 28.3 3.7 24 522-545 26-49 (75)
303 3jq1_A SUSD superfamily protei 42.0 57 0.0019 34.5 8.1 47 130-176 154-208 (481)
304 2ijq_A Hypothetical protein; s 41.9 98 0.0033 27.9 8.4 60 118-177 36-104 (161)
305 3t5x_A PCI domain-containing p 41.1 32 0.0011 32.1 5.3 32 149-180 15-46 (203)
306 4a1g_A Mitotic checkpoint seri 40.7 81 0.0028 28.2 7.6 84 90-179 47-132 (152)
307 3myv_A SUSD superfamily protei 40.4 54 0.0019 34.3 7.6 30 147-176 189-218 (454)
308 3otn_A SUSD superfamily protei 39.7 58 0.002 34.4 7.7 47 130-176 160-225 (482)
309 1om2_A Protein (mitochondrial 39.2 38 0.0013 28.0 4.7 37 153-189 25-61 (95)
310 3lew_A SUSD-like carbohydrate 39.1 59 0.002 34.5 7.7 28 115-142 204-231 (495)
311 3ckc_A SUSD; TPR repeat, carbo 38.8 1.3E+02 0.0044 31.7 10.4 88 89-176 104-231 (527)
312 3re2_A Predicted protein; meni 38.8 1.2E+02 0.004 31.3 9.0 52 144-195 292-349 (472)
313 1wy6_A Hypothetical protein ST 38.5 66 0.0022 28.8 6.4 30 114-143 125-154 (172)
314 2npm_A 14-3-3 domain containin 38.5 1.5E+02 0.0051 28.9 9.7 52 88-141 173-225 (260)
315 4aez_C MAD3, mitotic spindle c 38.2 1.3E+02 0.0045 28.6 9.0 84 90-179 96-181 (223)
316 3qnk_A Putative lipoprotein; a 36.8 63 0.0022 34.4 7.5 57 87-143 153-211 (517)
317 3u84_A Menin; MLL, JUND, ledgf 36.8 1.2E+02 0.0041 31.8 8.9 52 144-195 314-371 (550)
318 2cfu_A SDSA1; SDS-hydrolase, l 36.7 75 0.0026 35.2 8.2 55 147-201 448-502 (658)
319 3t5x_A PCI domain-containing p 36.2 72 0.0024 29.7 6.9 37 113-149 13-49 (203)
320 4gq4_A Menin; tumor suppressor 36.1 1.7E+02 0.0058 30.7 9.9 92 85-195 259-356 (489)
321 3kez_A Putative sugar binding 35.9 66 0.0023 33.7 7.4 29 148-176 196-224 (461)
322 3mcx_A SUSD superfamily protei 35.9 58 0.002 34.2 6.9 30 148-177 202-231 (477)
323 3hdx_A SUSD homolog, SUSD supe 35.4 68 0.0023 33.8 7.4 57 87-143 156-226 (478)
324 2llv_A Heat shock protein STI1 34.8 27 0.00093 27.0 3.1 38 451-488 24-70 (71)
325 1qsa_A Protein (soluble lytic 34.1 4.9E+02 0.017 28.3 15.4 118 74-197 217-334 (618)
326 2xze_A STAM-binding protein; h 34.0 1.1E+02 0.0038 27.0 7.4 44 64-107 33-80 (146)
327 3snx_A SUSD homolog, putative 33.5 68 0.0023 33.7 7.0 33 145-177 188-220 (460)
328 1om2_A Protein (mitochondrial 33.1 42 0.0014 27.7 4.0 29 75-103 24-52 (95)
329 2cfu_A SDSA1; SDS-hydrolase, l 31.9 65 0.0022 35.7 6.7 51 116-166 451-501 (658)
330 3myv_A SUSD superfamily protei 31.9 85 0.0029 32.8 7.4 17 130-146 164-180 (454)
331 3jq1_A SUSD superfamily protei 30.4 55 0.0019 34.6 5.6 55 87-142 154-208 (481)
332 2wpv_A GET4, UPF0363 protein Y 30.1 4.2E+02 0.014 26.3 13.9 25 114-138 134-158 (312)
333 2o8p_A 14-3-3 domain containin 30.0 3.3E+02 0.011 25.9 10.3 72 70-142 119-196 (227)
334 2dl1_A Spartin; SPG20, MIT, st 29.3 38 0.0013 29.0 3.3 42 130-179 19-60 (116)
335 3t5v_B Nuclear mRNA export pro 29.1 1.2E+02 0.004 32.1 7.8 70 77-147 182-254 (455)
336 3kez_A Putative sugar binding 29.1 94 0.0032 32.5 7.2 15 131-145 171-185 (461)
337 3lew_A SUSD-like carbohydrate 29.1 99 0.0034 32.7 7.4 49 130-178 174-233 (495)
338 3spa_A Mtrpol, DNA-directed RN 28.9 3.1E+02 0.011 32.3 11.7 69 113-181 126-200 (1134)
339 2rpa_A Katanin P60 ATPase-cont 28.7 53 0.0018 26.0 3.8 30 71-100 12-41 (78)
340 3jys_A SUSD superfamily protei 28.0 2.4E+02 0.0082 29.8 10.2 47 130-176 161-222 (499)
341 3mcx_A SUSD superfamily protei 27.4 1E+02 0.0034 32.4 7.0 17 130-146 176-192 (477)
342 2dl1_A Spartin; SPG20, MIT, st 27.3 1.1E+02 0.0038 26.1 5.8 17 130-146 45-61 (116)
343 2wb7_A PT26-6P; extra chromoso 26.5 6.1E+02 0.021 27.0 17.2 102 53-177 411-516 (526)
344 3jys_A SUSD superfamily protei 26.5 89 0.003 33.2 6.4 55 88-142 162-222 (499)
345 3r1f_A ESX-1 secretion-associa 26.4 1.2E+02 0.0042 26.1 6.3 50 471-520 58-129 (135)
346 3i4g_A SUSD-like carbohydrate 25.9 1.1E+02 0.0039 32.6 7.2 55 88-142 168-226 (528)
347 2q13_A DCC-interacting protein 25.1 4.9E+02 0.017 26.1 11.6 124 53-177 19-146 (385)
348 3fnb_A Acylaminoacyl peptidase 24.4 3.5E+02 0.012 26.9 10.3 29 70-98 68-96 (405)
349 2br9_A 14-3-3E, 14-3-3 protein 23.4 2.3E+02 0.0079 27.1 8.0 52 89-141 148-200 (234)
350 3k66_A Beta-amyloid-like prote 22.7 5.1E+02 0.017 24.8 10.3 164 53-218 18-200 (239)
351 3hd7_B Syntaxin-1A; membrane p 22.6 94 0.0032 26.0 4.5 15 538-552 91-105 (109)
352 2wvi_A Mitotic checkpoint seri 22.2 4.3E+02 0.015 23.7 12.4 83 91-179 43-127 (164)
353 2pk2_A Cyclin-T1, protein TAT; 21.9 19 0.00065 36.9 0.0 13 88-100 60-72 (358)
354 3kz3_A Repressor protein CI; f 21.7 2E+02 0.0067 21.6 6.1 18 503-520 2-19 (80)
355 3pmr_A Amyloid-like protein 1; 21.2 5.2E+02 0.018 24.3 12.6 169 6-195 28-204 (219)
356 1o9d_A 14-3-3-like protein C; 20.9 2.7E+02 0.0092 27.0 8.0 53 88-141 152-205 (260)
357 3iv0_A SUSD homolog; NP_809186 20.4 2E+02 0.0068 30.1 7.7 46 130-175 166-239 (481)
No 1
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.83 E-value=1e-19 Score=161.68 Aligned_cols=115 Identities=19% Similarity=0.295 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008613 68 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN 147 (559)
Q Consensus 68 ~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~ 147 (559)
+..++.++++|+.+++.|+|++|+..|+++|+++|.++. +|+++|.||.++|+|++|+.+|+++|+++|++
T Consensus 10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 80 (126)
T 4gco_A 10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAI---------LYSNRAACLTKLMEFQRALDDCDTCIRLDSKF 80 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh
Confidence 334999999999999999999999999999999998865 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008613 148 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA 191 (559)
Q Consensus 148 ~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a 191 (559)
+.+|+++|.+|..+|++++|+.+|+++++++|++..++..|+.+
T Consensus 81 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 81 IKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 99999999999999999999999999999999999999888765
No 2
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.78 E-value=7.1e-19 Score=163.50 Aligned_cols=130 Identities=15% Similarity=0.204 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCch---hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-
Q 008613 68 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSE---GRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY- 143 (559)
Q Consensus 68 ~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e---~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l- 143 (559)
+..+..++++|+.+++.|+|++|+..|++||+++|.++..+ .......+|+|+|.|+.++|+|++|+.+|+++|++
T Consensus 8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~ 87 (159)
T 2hr2_A 8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF 87 (159)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 44588999999999999999999999999999999965422 12234559999999999999999999999999999
Q ss_pred ------CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 008613 144 ------DAKNVKAL----YRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 197 (559)
Q Consensus 144 ------dP~~~kal----~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~ 197 (559)
+|+++++| +++|.+|..+|+|++|+.+|+++++++|++..+...+..+++.+..
T Consensus 88 n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~~ 151 (159)
T 2hr2_A 88 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAID 151 (159)
T ss_dssp HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHH
T ss_pred hccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 99999999 9999999999999999999999999999998887777777776654
No 3
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.77 E-value=3.4e-18 Score=156.50 Aligned_cols=134 Identities=26% Similarity=0.351 Sum_probs=117.9
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC--------CCCCc-hhhhhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 008613 67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQ--------GIHSS-EGRTLLLACSLNSMSCYLKTKQYDECIKVG 137 (559)
Q Consensus 67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p--------~~~~~-e~~~l~~~~~~nlA~~ylklg~y~eAi~~~ 137 (559)
.+..+..++.+|+.+++.|+|.+|+..|.++|.+.+ .++.. ........+|+|+|.||+++|+|++|+.+|
T Consensus 7 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~ 86 (162)
T 3rkv_A 7 KLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETS 86 (162)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 455689999999999999999999999999999832 22100 124456679999999999999999999999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHhhcC
Q 008613 138 SEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG-TIADVLRDAKEILMKEDG 200 (559)
Q Consensus 138 ~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~-~a~~~L~~a~~~l~~~~~ 200 (559)
+++|+++|+++++|+++|.+|..+|+|++|+.+|++++.++|+++ .+...|..+...+++...
T Consensus 87 ~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~ 150 (162)
T 3rkv_A 87 SEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKA 150 (162)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998 789999999988877654
No 4
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.72 E-value=6.7e-17 Score=141.10 Aligned_cols=117 Identities=18% Similarity=0.213 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008613 70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK 149 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~k 149 (559)
.+..++.+|..+++.|+|++|+..|.+++.++|.++. +|+++|.||.++|+|++|+.+|+++++++|+++.
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~ 73 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDAR---------GYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVR 73 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH---------HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH
Confidence 4788999999999999999999999999999998855 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHH
Q 008613 150 ALYRRGQAYKDIGRLEEAVSDLSNAHEVS------PDDGTIADVLRDAKEIL 195 (559)
Q Consensus 150 al~~rG~A~~~lg~~eeAi~dlekAl~l~------P~~~~a~~~L~~a~~~l 195 (559)
+|+++|.+|..+|++++|+.+|++++.++ |++..++..+..+...+
T Consensus 74 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 74 AYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999 99999999998887654
No 5
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.72 E-value=5.7e-17 Score=147.81 Aligned_cols=135 Identities=5% Similarity=-0.036 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCH
Q 008613 51 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY 130 (559)
Q Consensus 51 ee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y 130 (559)
.++..+...++......+..+..++.+|.+|++.|+|++|+.+|.++|+++|.++. +|+++|.||.++|+|
T Consensus 11 ~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~---------a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 11 ADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPK---------AHRFLGLLYELEENT 81 (150)
T ss_dssp HHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCH
T ss_pred ChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHcCch
Confidence 34455555666666666777889999999999999999999999999999999865 999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHH
Q 008613 131 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSD-LSNAHEVSPDDGTIADVLRDAKEI 194 (559)
Q Consensus 131 ~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~d-lekAl~l~P~~~~a~~~L~~a~~~ 194 (559)
++|+..|+++++++|+++.+|+++|.+|..+|++++|+.. ++++++++|+++.++..+..+...
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~ 146 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDC 146 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988876 599999999999998877776544
No 6
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.72 E-value=7.1e-17 Score=143.16 Aligned_cols=114 Identities=21% Similarity=0.276 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008613 68 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN 147 (559)
Q Consensus 68 ~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~ 147 (559)
.+.+..++++|+.+++.|+|++|+.+|++||+++|.++. +|+|+|.||+++|+|++|+.+|+++|+++|++
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~---------~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~ 75 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNIT---------FYNNKAAVYFEEKKFAECVQFCEKAVEVGRET 75 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc
Confidence 345888999999999999999999999999999998854 99999999999999999999999999999876
Q ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008613 148 -------VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA 191 (559)
Q Consensus 148 -------~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a 191 (559)
.++|+++|.+|..+++|++|+.+|++++.++|+ +++...|..+
T Consensus 76 ~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~l 125 (127)
T 4gcn_A 76 RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKEL 125 (127)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHHh
Confidence 468999999999999999999999999999885 5555555544
No 7
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.70 E-value=1.8e-16 Score=146.11 Aligned_cols=107 Identities=11% Similarity=0.085 Sum_probs=102.2
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008613 67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 146 (559)
Q Consensus 67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~ 146 (559)
.+..+..++.+|.++++.|+|++|+..|++++.++|.++. +|+++|.||..+|+|++|+..|+++++++|+
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~---------~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVD---------YIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence 4444999999999999999999999999999999999866 9999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008613 147 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG 182 (559)
Q Consensus 147 ~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~ 182 (559)
++.+|+++|.+|..+|++++|+.+|+++++++|+.+
T Consensus 103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999999999875
No 8
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.68 E-value=4e-16 Score=142.91 Aligned_cols=121 Identities=20% Similarity=0.197 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008613 69 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV 148 (559)
Q Consensus 69 ~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ 148 (559)
..+..++.+|.+++..|+|++|+.+|.+++.++|.++. +|+++|.||+.+|+|++|+.+|+++++++|+++
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 79 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPI---------YLSNRAAAYSASGQHEKAAEDAELATVVDPKYS 79 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHH---------HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 45889999999999999999999999999999998755 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHHhh
Q 008613 149 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT--IADVLRDAKEILMKE 198 (559)
Q Consensus 149 kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~--a~~~L~~a~~~l~~~ 198 (559)
.+|+++|.+|..+|++++|+.+|++++.++|++.. +...+..++.++++.
T Consensus 80 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~ 131 (164)
T 3sz7_A 80 KAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEA 131 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999877 556666666666543
No 9
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.68 E-value=4.7e-16 Score=141.69 Aligned_cols=123 Identities=17% Similarity=0.120 Sum_probs=111.6
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008613 67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 146 (559)
Q Consensus 67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~ 146 (559)
.+..+..+..+|..++..|+|++|+..|.+++.++|.++. +|+++|.||..+|+|++|+..|++++.++|+
T Consensus 17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 87 (148)
T 2vgx_A 17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSR---------FFLGLGACRQAMGQYDLAIHSYSYGAVMDIX 87 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHH---------HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 3444888999999999999999999999999999998865 8999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 008613 147 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE 198 (559)
Q Consensus 147 ~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~ 198 (559)
++.+++++|.+|..+|++++|+.+|+++++++|+++........+...+...
T Consensus 88 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l 139 (148)
T 2vgx_A 88 EPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAI 139 (148)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHC
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999877666666666666543
No 10
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.66 E-value=7.2e-16 Score=138.32 Aligned_cols=121 Identities=14% Similarity=0.132 Sum_probs=110.6
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008613 67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 146 (559)
Q Consensus 67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~ 146 (559)
.+.....++.+|..++..|+|++|+..|.+++.++|.++. +|+++|.||..+|+|++|+..|++++.++|+
T Consensus 14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDAR---------YFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHH---------HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 3444888999999999999999999999999999998865 8999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008613 147 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM 196 (559)
Q Consensus 147 ~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~ 196 (559)
++.+++.+|.+|..+|++++|+.+|++++.++|+++........+...+.
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~ 134 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLE 134 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988776666666665554
No 11
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.65 E-value=2.6e-15 Score=144.75 Aligned_cols=188 Identities=13% Similarity=0.043 Sum_probs=141.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhCCChHHHHHHHHHH-HccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHc----
Q 008613 10 IATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKL-ANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSE---- 84 (559)
Q Consensus 10 ~A~e~mk~m~pedl~~a~e~l~~~~pee~~~~~~~~-~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~---- 84 (559)
.+...++....++....++..-..+|+......... ......++..+...++..+...+..+..+..+|.++...
T Consensus 11 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~ 90 (217)
T 2pl2_A 11 LGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQA 90 (217)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhh
Confidence 344444555566655555655555555443322211 111122344566666666677777789999999999999
Q ss_pred -------CCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008613 85 -------GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQA 157 (559)
Q Consensus 85 -------g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A 157 (559)
|+|++|+..|.++++++|.++. +|+++|.+|..+|++++|+..|+++++++ +++.+++.+|.+
T Consensus 91 ~~~~~~~g~~~~A~~~~~~al~~~P~~~~---------~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~ 160 (217)
T 2pl2_A 91 EDRERGKGYLEQALSVLKDAERVNPRYAP---------LHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAEL 160 (217)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHH
T ss_pred hhhcccccCHHHHHHHHHHHHHhCcccHH---------HHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHH
Confidence 9999999999999999998865 89999999999999999999999999999 999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccc
Q 008613 158 YKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGL 207 (559)
Q Consensus 158 ~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~ 207 (559)
|..+|++++|+..|++++.++|++..++..++.+...+++.+++...+++
T Consensus 161 ~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999999999999999999999999999999998888877766555443
No 12
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.65 E-value=4.3e-15 Score=140.23 Aligned_cols=135 Identities=30% Similarity=0.440 Sum_probs=121.5
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCch-------hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008613 67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSE-------GRTLLLACSLNSMSCYLKTKQYDECIKVGSE 139 (559)
Q Consensus 67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e-------~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~ 139 (559)
.+..+..++.+|+.++..|+|++|+.+|.+++.+.|.++... ...+...+|+++|.||+.+|+|++|+.+|++
T Consensus 34 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 113 (198)
T 2fbn_A 34 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASK 113 (198)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 556688999999999999999999999999999988876321 1233357999999999999999999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCC
Q 008613 140 VLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH 201 (559)
Q Consensus 140 AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~ 201 (559)
+++++|+++.+++++|.+|..+|++++|+.+|++++.++|++..++..+..+...+++..+.
T Consensus 114 al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 175 (198)
T 2fbn_A 114 VLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKK 175 (198)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998776553
No 13
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.64 E-value=2.9e-15 Score=144.38 Aligned_cols=156 Identities=12% Similarity=0.104 Sum_probs=141.1
Q ss_pred HHHHhhCCChHHHHHHHHHHHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC
Q 008613 26 AAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIH 105 (559)
Q Consensus 26 a~e~l~~~~pee~~~~~~~~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~ 105 (559)
....+...+.++......++....|+. +..+..+|.+++..|+|++|+..|.++++++|.++
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~p~~------------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~ 73 (217)
T 2pl2_A 12 GVQLYALGRYDAALTLFERALKENPQD------------------PEALYWLARTQLKLGLVNPALENGKTLVARTPRYL 73 (217)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTSSSC------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 344556677778777777777777777 89999999999999999999999999999999986
Q ss_pred CchhhhhHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008613 106 SSEGRTLLLACSLNSMSCYLKT-----------KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNA 174 (559)
Q Consensus 106 ~~e~~~l~~~~~~nlA~~ylkl-----------g~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekA 174 (559)
. +|+++|.+|... |++++|+..|+++++++|+++.+++.+|.+|..+|++++|+..|+++
T Consensus 74 ~---------a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 144 (217)
T 2pl2_A 74 G---------GYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQA 144 (217)
T ss_dssp H---------HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred H---------HHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 5 999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613 175 HEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 209 (559)
Q Consensus 175 l~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i 209 (559)
++++ +++.++..++.+...+++.+++...+++++
T Consensus 145 l~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al 178 (217)
T 2pl2_A 145 LALE-DTPEIRSALAELYLSMGRLDEALAQYAKAL 178 (217)
T ss_dssp HHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred Hhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999 999999999999999988877666666665
No 14
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.64 E-value=2.8e-16 Score=179.06 Aligned_cols=149 Identities=14% Similarity=0.088 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHH
Q 008613 52 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD 131 (559)
Q Consensus 52 e~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~ 131 (559)
++..+...+++.++..+..+..+.++|.+|++.|+|++|+..|++||+++|.++. +|+|+|.+|.++|+|+
T Consensus 24 ~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~---------a~~nLg~~l~~~g~~~ 94 (723)
T 4gyw_A 24 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD---------AYSNMGNTLKEMQDVQ 94 (723)
T ss_dssp CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHcCCHH
Confidence 4556667777777777777888888888888888888888888888888887754 8888888888888888
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613 132 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 209 (559)
Q Consensus 132 eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i 209 (559)
+|++.|+++|+++|+++.+|+++|.+|..+|++++|+.+|+++++++|++..++..|+.+...+++..++...+++++
T Consensus 95 ~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal 172 (723)
T 4gyw_A 95 GALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLV 172 (723)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888888888888888888888877776666666555
No 15
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.64 E-value=1.8e-15 Score=156.40 Aligned_cols=148 Identities=22% Similarity=0.352 Sum_probs=129.3
Q ss_pred HHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCC------chhhhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008613 65 NYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS------SEGRTLLLACSLNSMSCYLKTKQYDECIKVGS 138 (559)
Q Consensus 65 ~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~------~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~ 138 (559)
...+..+..++.+|+++++.|+|++|+.+|.+++.+.|.+.. .+...+...+|+|+|.||+++|+|++|+.+|+
T Consensus 141 ~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~ 220 (336)
T 1p5q_A 141 EEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCN 220 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 346667999999999999999999999999999999998742 12344556799999999999999999999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCC-CCCccchhhhh
Q 008613 139 EVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH-HGPRGLLIEEI 212 (559)
Q Consensus 139 ~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~-~~~~~~~i~e~ 212 (559)
++|+++|+++++|+++|.+|..+|+|++|+.+|+++++++|++..++..++.+...+++...+ ...+++.+...
T Consensus 221 ~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (336)
T 1p5q_A 221 KALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERL 295 (336)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999988887654 33445554433
No 16
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.63 E-value=1.8e-15 Score=172.53 Aligned_cols=132 Identities=14% Similarity=0.107 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008613 69 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV 148 (559)
Q Consensus 69 ~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ 148 (559)
..++.+.++|++|.+.|+|++|+.+|++||+++|.++. +|+|+|.+|.++|+|++|+..|+++|+++|+++
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~---------a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~ 77 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA---------AHSNLASVLQQQGKLQEALMHYKEAIRISPTFA 77 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 34888889999999999999999999999999888754 889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613 149 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 209 (559)
Q Consensus 149 kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i 209 (559)
.+|+++|.+|..+|++++|+.+|+++++++|++..++..|+.+...+++.+++...+++++
T Consensus 78 ~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al 138 (723)
T 4gyw_A 78 DAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTAL 138 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988888887776655555555
No 17
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.63 E-value=3.7e-15 Score=160.72 Aligned_cols=136 Identities=24% Similarity=0.397 Sum_probs=119.4
Q ss_pred HHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCC------chhhhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008613 65 NYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS------SEGRTLLLACSLNSMSCYLKTKQYDECIKVGS 138 (559)
Q Consensus 65 ~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~------~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~ 138 (559)
...+..+..++.+|+.+++.|+|.+|+.+|.+||.++|.++. .+...+...+|+|+|.||+++++|++|+.+|+
T Consensus 262 ~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~ 341 (457)
T 1kt0_A 262 KEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCD 341 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 346677999999999999999999999999999999998742 12344557799999999999999999999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcC
Q 008613 139 EVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG 200 (559)
Q Consensus 139 ~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~ 200 (559)
++|+++|+++++|+++|.+|..+++|++|+.+|+++++++|++..++..++.+...+++...
T Consensus 342 ~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 342 KALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888877653
No 18
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.62 E-value=5.7e-15 Score=129.59 Aligned_cols=120 Identities=27% Similarity=0.354 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008613 70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK 149 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~k 149 (559)
.+..++..|..++..|+|++|+..|.+++.+.|.++. +|+++|.||..+|+|++|+.+|.++++++|+++.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 78 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAV---------YYTNRALCYLKMQQPEQALADCRRALELDGQSVK 78 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHH---------HHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHH
Confidence 3778999999999999999999999999999988754 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHHHhh
Q 008613 150 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD-----DGTIADVLRDAKEILMKE 198 (559)
Q Consensus 150 al~~rG~A~~~lg~~eeAi~dlekAl~l~P~-----~~~a~~~L~~a~~~l~~~ 198 (559)
+++++|.+|..+|++++|+..|++++.++|+ +..+...+..+.......
T Consensus 79 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~~ 132 (137)
T 3q49_B 79 AHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNS 132 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998 788888888887776543
No 19
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.58 E-value=3.9e-14 Score=119.22 Aligned_cols=115 Identities=23% Similarity=0.275 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008613 70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK 149 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~k 149 (559)
.+..+...|..++..|+|++|+..|.+++...|.++. +++++|.||...|+|++|+..+.++++++|+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 73 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHV---------LYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGK 73 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHH---------HHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHH
Confidence 3678899999999999999999999999999888754 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008613 150 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE 193 (559)
Q Consensus 150 al~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~ 193 (559)
+++.+|.+|..+|++++|+..|++++.++|++..++..+..+..
T Consensus 74 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 74 GYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999888877753
No 20
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.58 E-value=6.3e-14 Score=134.11 Aligned_cols=157 Identities=11% Similarity=0.055 Sum_probs=115.4
Q ss_pred HHHHHHHhhCCChHHHHHHHHHHHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 008613 23 LKCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQ 102 (559)
Q Consensus 23 l~~a~e~l~~~~pee~~~~~~~~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p 102 (559)
+.+....+...+.++......++....|+........ ...............+|.++++.|+|++|+..|.++++++|
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~--~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 85 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWT--NVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP 85 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHH--HSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHh--hhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence 4455556666777777666666666666652211110 00000111233344599999999999999999999999999
Q ss_pred CCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----------------------
Q 008613 103 GIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKD---------------------- 160 (559)
Q Consensus 103 ~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~---------------------- 160 (559)
.++. +|+++|.||...|+|++|+..|+++++++|+++.+|+++|.+|..
T Consensus 86 ~~~~---------~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (208)
T 3urz_A 86 NNVD---------CLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM 156 (208)
T ss_dssp TCHH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH
T ss_pred CCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch
Confidence 9865 999999999999999999999999999999999988888877643
Q ss_pred -------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008613 161 -------------IGRLEEAVSDLSNAHEVSPDDGTIADVLRDA 191 (559)
Q Consensus 161 -------------lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a 191 (559)
+|+|++|+.+|+++++++|++. +...+..+
T Consensus 157 ~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~-~~~~l~~i 199 (208)
T 3urz_A 157 QYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE-AQKTLDKI 199 (208)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH-HHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH-HHHHHHHH
Confidence 3467888999999999888743 44444444
No 21
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.58 E-value=7e-14 Score=119.64 Aligned_cols=122 Identities=25% Similarity=0.246 Sum_probs=114.2
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008613 67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 146 (559)
Q Consensus 67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~ 146 (559)
.+..+..+..+|..++..|+|++|+..|.+++.+.|.++. +++++|.||...|+|++|+..+.++++++|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 78 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAV---------YFCNRAAAYSKLGNYAGAVQDCERAICIDPA 78 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHH---------HHHHHHHHHHHhhchHHHHHHHHHHHhcCcc
Confidence 4455889999999999999999999999999999887644 8999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 008613 147 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 197 (559)
Q Consensus 147 ~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~ 197 (559)
++.+++.+|.+|..+|++++|+..|++++.++|++..++..++.+...+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 79 YSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999998887754
No 22
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.58 E-value=4.8e-15 Score=137.23 Aligned_cols=130 Identities=16% Similarity=0.134 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 150 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka 150 (559)
+..+.++|++++..|+|++|+..|+++|+++|.++. +|+++|.||.++|++++|+..+.+++..+|+++.+
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 75 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVE---------TLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEA 75 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHH
Confidence 456667777777777777777777777777776644 67777777777777777777777777777777777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613 151 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 209 (559)
Q Consensus 151 l~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i 209 (559)
++.+|.++...+++++|+..+++++.++|++..++..++.+...+++.+++...+++++
T Consensus 76 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l 134 (184)
T 3vtx_A 76 YYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTI 134 (184)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence 77777777777777777777777777777777777777777666665555444444433
No 23
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.58 E-value=1.5e-14 Score=152.00 Aligned_cols=133 Identities=27% Similarity=0.482 Sum_probs=118.2
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCC-------chhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008613 67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS-------SEGRTLLLACSLNSMSCYLKTKQYDECIKVGSE 139 (559)
Q Consensus 67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~-------~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~ 139 (559)
....+..++.+|+.+++.|+|++|+.+|+++|++.+..+. .........+|+|+|.||+++++|++|+.+|++
T Consensus 219 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 298 (370)
T 1ihg_A 219 ILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLE 298 (370)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 4556888999999999999999999999999996544210 013445677999999999999999999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 008613 140 VLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED 199 (559)
Q Consensus 140 AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~ 199 (559)
+|+++|+++++|+++|.+|..+|+|++|+.+|+++++++|++..++..+..++..+++.+
T Consensus 299 al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~ 358 (370)
T 1ihg_A 299 ALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQK 358 (370)
T ss_dssp HHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988887654
No 24
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.58 E-value=2.2e-14 Score=137.36 Aligned_cols=117 Identities=13% Similarity=0.066 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHH----------------HHHHHHHcCCHHHHH
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLN----------------SMSCYLKTKQYDECI 134 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~n----------------lA~~ylklg~y~eAi 134 (559)
++.+..+|..++..|+|++|+.+|.+++.++|.++. +|++ +|.||.+.|+|++|+
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 74 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTE---------MYYWTNVDKNSEISSKLATELALAYKKNRNYDKAY 74 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHH---------HHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH---------HHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHH
Confidence 567888999999999999999999999999887654 6666 999999999999999
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008613 135 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM 196 (559)
Q Consensus 135 ~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~ 196 (559)
..|+++++++|+++.+|+++|.+|..+|++++|+.+|+++++++|++..++..++.+....+
T Consensus 75 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 75 LFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999998876554
No 25
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.57 E-value=3.2e-14 Score=131.58 Aligned_cols=141 Identities=13% Similarity=0.055 Sum_probs=122.2
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008613 60 IDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSE 139 (559)
Q Consensus 60 l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~ 139 (559)
++..++..+..+..+..+|.+++..|+|++|+..|.+++...|..+. ++.+++.++...++++.|+..+.+
T Consensus 28 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~a~~~~~~ 98 (184)
T 3vtx_A 28 YKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAE---------AYYILGSANFMIDEKQAAIDALQR 98 (184)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHH---------HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33333333444888999999999999999999999999999888754 888999999999999999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613 140 VLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 209 (559)
Q Consensus 140 AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i 209 (559)
+++++|++..+++.+|.+|..+|++++|+..|+++++++|++..++..++.+...+++.+++...+++++
T Consensus 99 a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 168 (184)
T 3vtx_A 99 AIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKAL 168 (184)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998888877777777666
No 26
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.57 E-value=1.8e-14 Score=152.33 Aligned_cols=130 Identities=7% Similarity=-0.053 Sum_probs=117.5
Q ss_pred HHHHHHHhHHhHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHH
Q 008613 57 RARIDAQMNYEFNAAKMLKKQGNELYSEGR-FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIK 135 (559)
Q Consensus 57 ~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~-y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~ 135 (559)
...+...+...+.....|..+|.++...|+ |++|+..|.++|.++|.+.. +|+++|.||..+|+|++|+.
T Consensus 117 l~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~---------a~~~~g~~~~~~g~~~eAl~ 187 (382)
T 2h6f_A 117 FKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ---------VWHHRRVLVEWLRDPSQELE 187 (382)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHTCCTTHHH
T ss_pred HHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHccCHHHHHH
Confidence 333334444444449999999999999997 99999999999999999865 99999999999999999999
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008613 136 VGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 195 (559)
Q Consensus 136 ~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l 195 (559)
+|+++|+++|++..+|++||.+|..+|++++|+.+|+++++++|++..++..++.+...+
T Consensus 188 ~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l 247 (382)
T 2h6f_A 188 FIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNT 247 (382)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999998874
No 27
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.56 E-value=3.2e-14 Score=122.91 Aligned_cols=117 Identities=21% Similarity=0.284 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008613 70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK 149 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~k 149 (559)
.+..++.+|..++..|+|++|+.+|.+++.+.|.+.. +++++|.||...|+|++|+..|+++++++|+++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 85 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAK---------LYSNRAACYTKLLEFQLALKDCEECIQLEPTFIK 85 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHH---------HHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH---------HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchH
Confidence 4788999999999999999999999999999887744 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008613 150 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 195 (559)
Q Consensus 150 al~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l 195 (559)
+++.+|.+|..+|++++|+..|++++.++|++..++..++.+....
T Consensus 86 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 86 GYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998888887655
No 28
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.56 E-value=3.2e-15 Score=154.82 Aligned_cols=143 Identities=30% Similarity=0.431 Sum_probs=98.3
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCC--------chhhhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008613 67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS--------SEGRTLLLACSLNSMSCYLKTKQYDECIKVGS 138 (559)
Q Consensus 67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~--------~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~ 138 (559)
.+..+..++.+|+.+++.|+|.+|+.+|.+++.+.|.+.. .....+...+|+|+|.||+++++|++|+.+|+
T Consensus 175 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~ 254 (338)
T 2if4_A 175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCN 254 (338)
T ss_dssp HHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5667889999999999999999999999999999876531 01122233599999999999999999999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh-cCCCCCccchh
Q 008613 139 EVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE-DGHHGPRGLLI 209 (559)
Q Consensus 139 ~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~-~~~~~~~~~~i 209 (559)
++|+++|+++++|+++|.+|..+|+|++|+.+|++++.++|++..++..|..+....... +.+...+.+.+
T Consensus 255 ~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l 326 (338)
T 2if4_A 255 IVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIF 326 (338)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------------
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999998885554433 33344444444
No 29
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.56 E-value=9.7e-15 Score=154.37 Aligned_cols=136 Identities=8% Similarity=-0.086 Sum_probs=127.4
Q ss_pred HHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHc
Q 008613 65 NYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ-YDECIKVGSEVLAY 143 (559)
Q Consensus 65 ~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~-y~eAi~~~~~AL~l 143 (559)
.+.+..+..+...|.++...|+|++|+..|.++|.++|.+.. +|+++|.||..+|+ |++|+.+|+++|++
T Consensus 91 ~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~---------a~~~~g~~l~~~g~d~~eAl~~~~~al~l 161 (382)
T 2h6f_A 91 IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYT---------VWHFRRVLLKSLQKDLHEEMNYITAIIEE 161 (382)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHH---------HHHHHHHHHHHcccCHHHHHHHHHHHHHH
Confidence 345667899999999999999999999999999999999865 99999999999997 99999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613 144 DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 209 (559)
Q Consensus 144 dP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i 209 (559)
+|+++.+|++||.+|..+|++++|+.+|++++.++|++..++..++.+...+++..++...++++|
T Consensus 162 ~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al 227 (382)
T 2h6f_A 162 QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLL 227 (382)
T ss_dssp CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998887776677666
No 30
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.55 E-value=2.3e-15 Score=137.15 Aligned_cols=115 Identities=15% Similarity=0.085 Sum_probs=104.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008613 77 QGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQ 156 (559)
Q Consensus 77 ~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~ 156 (559)
+|..+..+|++++||..|.+++...|..+. .++++|.||++.|+|++|+.+|+++|+++|+++.+|+.+|.
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~---------~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~ 73 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSI---------KGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGL 73 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHT---------THHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 678888999999999999999988777654 88999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcC
Q 008613 157 AYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG 200 (559)
Q Consensus 157 A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~ 200 (559)
+|..+|++++|+.+|+++++++|+++.++..++.+....++..+
T Consensus 74 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 117 (150)
T 4ga2_A 74 LYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDG 117 (150)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSS
T ss_pred HHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Confidence 99999999999999999999999999999999999888876544
No 31
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=7e-14 Score=123.28 Aligned_cols=117 Identities=32% Similarity=0.492 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008613 70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK 149 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~k 149 (559)
.+..++..|..++..|+|++|+.+|.+++.+.|.+ .....+|+++|.||...++|++|+..|+++++++|+++.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 100 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATP------QDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVK 100 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccc------hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHH
Confidence 37888999999999999999999999999987764 123569999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008613 150 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAK 192 (559)
Q Consensus 150 al~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~ 192 (559)
+++++|.+|..+|++++|+..|++++.++|++..++..+..+.
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888777664
No 32
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.55 E-value=2.3e-14 Score=125.87 Aligned_cols=103 Identities=8% Similarity=-0.033 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008613 72 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKAL 151 (559)
Q Consensus 72 ~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal 151 (559)
..+..+|..+++.|+|++|+..|.+++.++|.++. +|+++|.||...|++++|+..|+++++++|+++.++
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~---------a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 88 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREE---------AWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVH 88 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 34678999999999999999999999999999865 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008613 152 YRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT 183 (559)
Q Consensus 152 ~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~ 183 (559)
+.+|.+|..+|++++|+..|+++++++|++..
T Consensus 89 ~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 89 AALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence 99999999999999999999999999998753
No 33
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.54 E-value=1e-13 Score=120.14 Aligned_cols=117 Identities=12% Similarity=0.084 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---H
Q 008613 72 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN---V 148 (559)
Q Consensus 72 ~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~---~ 148 (559)
+.++.+|.+++..|+|++|+..|.+++...|.++. ...+++++|.||...|+|++|+..|.++++++|++ +
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~------~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 76 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVY------TPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAA 76 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTT------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcc------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccH
Confidence 45678999999999999999999999999888763 34589999999999999999999999999999999 8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008613 149 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI 194 (559)
Q Consensus 149 kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~ 194 (559)
.+++.+|.+|..+|++++|+..|++++..+|+++.+...+..+...
T Consensus 77 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l 122 (129)
T 2xev_A 77 GGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI 122 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998877666555443
No 34
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.54 E-value=1.4e-13 Score=117.92 Aligned_cols=119 Identities=21% Similarity=0.305 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--
Q 008613 70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN-- 147 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~-- 147 (559)
.+..+..+|..++..|+|++|+.+|.+++.+.|.++. +++++|.||...|+|++|+..|.+++.++|++
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 73 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMT---------YITNQAAVYFEKGDYNKCRELCEKAIEVGRENRE 73 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHH---------HHHHHHHHHHHhccHHHHHHHHHHHHhhccccch
Confidence 4778999999999999999999999999999887744 89999999999999999999999999999887
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 008613 148 -----VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE 198 (559)
Q Consensus 148 -----~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~ 198 (559)
+.+++++|.+|..+|++++|+..|++++.++| ++.++..+..+...+++.
T Consensus 74 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 128 (131)
T 1elr_A 74 DYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQ 128 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999 688888998888887654
No 35
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.54 E-value=9.2e-14 Score=133.22 Aligned_cols=141 Identities=15% Similarity=0.153 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHH
Q 008613 52 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD 131 (559)
Q Consensus 52 e~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~ 131 (559)
++..+...++..+...+..+..+..+|.+++..|+|++|+..|.+++.+.|.++. .......+|+++|.++..+|+|+
T Consensus 57 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~~~~~~~~~g~~~~~~~~~~ 134 (228)
T 4i17_A 57 KYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNAT--IEKLYAIYYLKEGQKFQQAGNIE 134 (228)
T ss_dssp CHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH--HHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHH--HHHHHHHHHHHHhHHHHHhccHH
Confidence 3445666667777777778999999999999999999999999999999998752 23334468999999999999999
Q ss_pred HHHHHHHHHHHcCCC--CHHHHHHHHHHHHHcCCH---------------------------HHHHHHHHHHHHhCCCCH
Q 008613 132 ECIKVGSEVLAYDAK--NVKALYRRGQAYKDIGRL---------------------------EEAVSDLSNAHEVSPDDG 182 (559)
Q Consensus 132 eAi~~~~~AL~ldP~--~~kal~~rG~A~~~lg~~---------------------------eeAi~dlekAl~l~P~~~ 182 (559)
+|+..|+++++++|+ ++.+|+.+|.+|...|+. ++|+..|+++++++|++.
T Consensus 135 ~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~ 214 (228)
T 4i17_A 135 KAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRT 214 (228)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCH
Confidence 999999999999999 999999999999999998 999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 008613 183 TIADVLRDAKEI 194 (559)
Q Consensus 183 ~a~~~L~~a~~~ 194 (559)
.+...+..++..
T Consensus 215 ~~~~~l~~i~~~ 226 (228)
T 4i17_A 215 EIKQMQDQVKAM 226 (228)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 999888877643
No 36
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.53 E-value=3.3e-13 Score=121.28 Aligned_cols=116 Identities=22% Similarity=0.336 Sum_probs=108.4
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008613 67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 146 (559)
Q Consensus 67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~ 146 (559)
....+..+..+|..++..|+|++|+..|.+++.+.|.++. +++++|.||...|+|++|+..|.++++++|+
T Consensus 9 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 79 (166)
T 1a17_A 9 ALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAI---------YYGNRSLAYLRTECYGYALGDATRAIELDKK 79 (166)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 3456889999999999999999999999999999888754 8999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008613 147 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA 191 (559)
Q Consensus 147 ~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a 191 (559)
++.+++.+|.+|..+|++++|+..|++++.++|++..++..+..+
T Consensus 80 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~ 124 (166)
T 1a17_A 80 YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC 124 (166)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999888666665
No 37
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.53 E-value=1.9e-13 Score=130.98 Aligned_cols=118 Identities=15% Similarity=0.115 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH--
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV-- 148 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~-- 148 (559)
...+...|.+++..|+|++|+..|.+++.+.|.++. +|+++|.||..+|+|++|+..|+++++++|+++
T Consensus 42 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 112 (228)
T 4i17_A 42 SVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLAN---------AYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATI 112 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHH---------HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHH
Confidence 567777999999999999999999999999887644 899999999999999999999999999999998
Q ss_pred -----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHh
Q 008613 149 -----KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD--DGTIADVLRDAKEILMK 197 (559)
Q Consensus 149 -----kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~--~~~a~~~L~~a~~~l~~ 197 (559)
.+|+.+|.++..+|++++|+..|+++++++|+ +..++..++.+....++
T Consensus 113 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~ 168 (228)
T 4i17_A 113 EKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGA 168 (228)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHH
Confidence 67999999999999999999999999999999 88999999988776654
No 38
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.50 E-value=7.9e-13 Score=134.48 Aligned_cols=146 Identities=14% Similarity=0.109 Sum_probs=125.3
Q ss_pred HHHHHHhHHhHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHH
Q 008613 58 ARIDAQMNYEFN--AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIK 135 (559)
Q Consensus 58 ~~l~~~~~~~~~--~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~ 135 (559)
..+...+...+. .+..+..+|.+++..|+|++|+..|.+++.+.|.++. +|+++|.+|...|+|++|+.
T Consensus 202 ~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 202 ELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYL---------LWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHH---------HHHHHHHHHHHcCCHHHHHH
Confidence 333444444444 5788899999999999999999999999999888754 89999999999999999999
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----------HHHHHHHHHHHHHHHhhcCCCCC
Q 008613 136 VGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD-----------GTIADVLRDAKEILMKEDGHHGP 204 (559)
Q Consensus 136 ~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~-----------~~a~~~L~~a~~~l~~~~~~~~~ 204 (559)
.|+++++++|+++.+++.+|.+|..+|++++|+..|++++.++|++ ..++..++.+...+++.+.+..-
T Consensus 273 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 273 AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 9999999999999999999999999999999999999999999988 88999999999999887765544
Q ss_pred ccchhhhh
Q 008613 205 RGLLIEEI 212 (559)
Q Consensus 205 ~~~~i~e~ 212 (559)
+.+.++.+
T Consensus 353 ~~~~l~~~ 360 (368)
T 1fch_A 353 DARDLSTL 360 (368)
T ss_dssp HTTCHHHH
T ss_pred HHHHHHHH
Confidence 44444433
No 39
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.50 E-value=8.4e-13 Score=111.89 Aligned_cols=116 Identities=28% Similarity=0.393 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 150 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka 150 (559)
+..+...|.+++..|+|++|+..|.+++...|.+.. ++++++.+|...|+|++|+..+.++++++|+++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 79 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE---------AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 79 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHH---------HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHH
Confidence 677889999999999999999999999999887643 89999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008613 151 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 195 (559)
Q Consensus 151 l~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l 195 (559)
++.+|.+|...|++++|+..|++++.++|++..++..++.+....
T Consensus 80 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 80 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999998888876543
No 40
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.49 E-value=4e-13 Score=138.86 Aligned_cols=119 Identities=18% Similarity=0.135 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 150 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka 150 (559)
...+..+|.++...|+|++|+..|.+++.+.|.++ .++++++.+|.+.|++++|+..|+++++++|+++.+
T Consensus 203 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~---------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 273 (388)
T 1w3b_A 203 LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA---------VVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDA 273 (388)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Confidence 33344444444444444444444444444444332 255566666666666666666666666666666666
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 008613 151 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE 198 (559)
Q Consensus 151 l~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~ 198 (559)
|+.+|.+|...|++++|+..|+++++++|++..++..++.+....++.
T Consensus 274 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 321 (388)
T 1w3b_A 274 YCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNI 321 (388)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCH
Confidence 666666666666666666666666666666666555555555444433
No 41
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.49 E-value=3.2e-12 Score=122.54 Aligned_cols=152 Identities=16% Similarity=0.158 Sum_probs=125.4
Q ss_pred hCCChHHHHHHHHHHHccCcH--------HHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 008613 31 THTPPEEVAEIGEKLANASPE--------EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQ 102 (559)
Q Consensus 31 ~~~~pee~~~~~~~~~~~~pe--------e~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p 102 (559)
...+.++......++....+. ++..+...+.......+..+..+...|.+++..|+|++|+..|.+++.+.|
T Consensus 91 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 170 (258)
T 3uq3_A 91 KLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP 170 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc
Confidence 344555555555554444332 122333444444456677888999999999999999999999999999988
Q ss_pred CCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----
Q 008613 103 GIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS---- 178 (559)
Q Consensus 103 ~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~---- 178 (559)
.++. +|+++|.||...|+|++|+..|+++++++|+++.+|+.+|.+|..+|++++|+..|+++++++
T Consensus 171 ~~~~---------~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 241 (258)
T 3uq3_A 171 EDAR---------GYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN 241 (258)
T ss_dssp TCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred ccHH---------HHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhc
Confidence 8754 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred --CCCHHHHHHHHHH
Q 008613 179 --PDDGTIADVLRDA 191 (559)
Q Consensus 179 --P~~~~a~~~L~~a 191 (559)
|++..++..|..+
T Consensus 242 ~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 242 NGSSAREIDQLYYKA 256 (258)
T ss_dssp TTTTHHHHHHHHHHT
T ss_pred CCCchHHHHHHHHHh
Confidence 9988888877654
No 42
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.48 E-value=5.8e-13 Score=130.72 Aligned_cols=150 Identities=13% Similarity=0.031 Sum_probs=124.7
Q ss_pred HHHHHhhCCChHHHHHHHHHHHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 008613 25 CAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGI 104 (559)
Q Consensus 25 ~a~e~l~~~~pee~~~~~~~~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~ 104 (559)
.....+...+.++......++....|.. ...+..++.+|.+++..|+|++|+..|.+++.+.|.+
T Consensus 21 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~---------------~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~ 85 (261)
T 3qky_A 21 RAMEFYNQGKYDRAIEYFKAVFTYGRTH---------------EWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQID 85 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHGGGCSCS---------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCCC---------------cchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC
Confidence 3444455566666666666555554433 1227789999999999999999999999999999887
Q ss_pred CCchhhhhHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHcCCCCHHHH-----------------HHHHHHHH
Q 008613 105 HSSEGRTLLLACSLNSMSCYLK--------TKQYDECIKVGSEVLAYDAKNVKAL-----------------YRRGQAYK 159 (559)
Q Consensus 105 ~~~e~~~l~~~~~~nlA~~ylk--------lg~y~eAi~~~~~AL~ldP~~~kal-----------------~~rG~A~~ 159 (559)
+. ...+++++|.||.. .|+|++|+..|+++++++|++..++ +.+|.+|.
T Consensus 86 ~~------~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~ 159 (261)
T 3qky_A 86 PR------VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYE 159 (261)
T ss_dssp TT------HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ch------hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 64 45689999999999 9999999999999999999986555 89999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHH
Q 008613 160 DIGRLEEAVSDLSNAHEVSPD---DGTIADVLRDAKEIL 195 (559)
Q Consensus 160 ~lg~~eeAi~dlekAl~l~P~---~~~a~~~L~~a~~~l 195 (559)
..|+|++|+..|++++..+|+ ...++..++.+...+
T Consensus 160 ~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~ 198 (261)
T 3qky_A 160 RRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAY 198 (261)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHh
Confidence 999999999999999999998 456888888888877
No 43
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.46 E-value=6.4e-13 Score=135.93 Aligned_cols=203 Identities=12% Similarity=-0.049 Sum_probs=142.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhCCChHHHHHHHHHH-HccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcC
Q 008613 7 LMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKL-ANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEG 85 (559)
Q Consensus 7 ~l~~A~e~mk~m~pedl~~a~e~l~~~~pee~~~~~~~~-~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g 85 (559)
.+..+...++....++....++.+-...|+......... ......++..+...++..+...+..+..+..+|.++...|
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 147 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTS 147 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccc
Confidence 345555555555555555555544433333322211100 0001122334445555555555555777777888888888
Q ss_pred CHHHHHHHHHHHHHhcCCCCCch-----------------------------------hhhh--HHHHHHHHHHHHHHcC
Q 008613 86 RFSNALQKYLLAKKNLQGIHSSE-----------------------------------GRTL--LLACSLNSMSCYLKTK 128 (559)
Q Consensus 86 ~y~eAi~~Y~kAL~l~p~~~~~e-----------------------------------~~~l--~~~~~~nlA~~ylklg 128 (559)
+|++|+..|.+++.+.|.+.... .... ...+++++|.+|...|
T Consensus 148 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g 227 (365)
T 4eqf_A 148 HQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSG 227 (365)
T ss_dssp CHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCC
Confidence 88888888887777766432110 0000 3558999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccch
Q 008613 129 QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLL 208 (559)
Q Consensus 129 ~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~ 208 (559)
+|++|+..|+++++++|+++.+|+.+|.+|..+|++++|+..|++++.++|++..++..++.+...+++..++...++++
T Consensus 228 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 307 (365)
T 4eqf_A 228 EFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTA 307 (365)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998777666666655
Q ss_pred h
Q 008613 209 I 209 (559)
Q Consensus 209 i 209 (559)
+
T Consensus 308 l 308 (365)
T 4eqf_A 308 L 308 (365)
T ss_dssp H
T ss_pred H
Confidence 5
No 44
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.45 E-value=4.9e-13 Score=123.16 Aligned_cols=117 Identities=12% Similarity=0.073 Sum_probs=105.2
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHH-HHHcCCH--HHHHHHHHHHHHc
Q 008613 67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSC-YLKTKQY--DECIKVGSEVLAY 143 (559)
Q Consensus 67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~-ylklg~y--~eAi~~~~~AL~l 143 (559)
.+..+..+..+|.+++..|+|++|+.+|.+++.+.|.++. +++++|.+ |...|+| ++|+..|.+++++
T Consensus 40 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~la~~l~~~~~~~~~~~A~~~~~~al~~ 110 (177)
T 2e2e_A 40 NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE---------LYAALATVLYYQASQHMTAQTRAMIDKALAL 110 (177)
T ss_dssp CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHH---------HHHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---------HHHHHHHHHHHhcCCcchHHHHHHHHHHHHh
Confidence 3334788999999999999999999999999999998754 89999999 8899999 9999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008613 144 DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAK 192 (559)
Q Consensus 144 dP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~ 192 (559)
+|+++.+++.+|.+|...|++++|+..|++++.++|++......+..+.
T Consensus 111 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i~ 159 (177)
T 2e2e_A 111 DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESIN 159 (177)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Confidence 9999999999999999999999999999999999998865554444443
No 45
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.45 E-value=1.1e-12 Score=134.18 Aligned_cols=135 Identities=16% Similarity=0.156 Sum_probs=117.2
Q ss_pred HHHHHHHHhHHhHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHH
Q 008613 56 MRARIDAQMNYEFN--AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDEC 133 (559)
Q Consensus 56 a~~~l~~~~~~~~~--~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eA 133 (559)
+...++..+...+. .+..+..+|.+++..|+|++|+..|.+++.+.|.++. +|+++|.+|...|+|++|
T Consensus 196 A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~l~~~~~~~g~~~~A 266 (365)
T 4eqf_A 196 VKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYS---------LWNRLGATLANGDRSEEA 266 (365)
T ss_dssp HHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHcCCHHHH
Confidence 33444444444444 5778999999999999999999999999999888754 899999999999999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHHHhhc
Q 008613 134 IKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD------------GTIADVLRDAKEILMKED 199 (559)
Q Consensus 134 i~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~------------~~a~~~L~~a~~~l~~~~ 199 (559)
+..|+++++++|+++.+++.+|.+|..+|++++|+..|++++.++|++ ..++..|+.+...+++.+
T Consensus 267 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 344 (365)
T 4eqf_A 267 VEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPE 344 (365)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHH
Confidence 999999999999999999999999999999999999999999999873 567888888887776543
No 46
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.45 E-value=8.9e-13 Score=119.46 Aligned_cols=130 Identities=14% Similarity=0.175 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 150 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka 150 (559)
...+...|.+++..|+|++|+..|.+++.+.|.++. +++++|.+|...|++++|+..+.++++++|+++.+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 112 (186)
T 3as5_A 42 VDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVK---------VATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNV 112 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---------HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHH
Confidence 778889999999999999999999999999887644 89999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613 151 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 209 (559)
Q Consensus 151 l~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i 209 (559)
++.+|.+|...|++++|+..|++++.++|++..++..++.+....++...+...+++.+
T Consensus 113 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 171 (186)
T 3as5_A 113 RFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKAN 171 (186)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888776665544444443
No 47
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.44 E-value=5.5e-12 Score=123.67 Aligned_cols=195 Identities=13% Similarity=0.058 Sum_probs=145.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhCCChHH---HHHHHHH-HHccCcHHHHHHHHHHHHHhHHhH---HHHHHHHHHHH
Q 008613 7 LMRIATENMKNMRPEDLKCAAEQLTHTPPEE---VAEIGEK-LANASPEEIATMRARIDAQMNYEF---NAAKMLKKQGN 79 (559)
Q Consensus 7 ~l~~A~e~mk~m~pedl~~a~e~l~~~~pee---~~~~~~~-~~~~~pee~~aa~~~l~~~~~~~~---~~a~~lk~~Gn 79 (559)
.+..|...++.-..++....++.+....|+. ....... .......++..+...++..+...+ .....++.+|.
T Consensus 18 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~ 97 (261)
T 3qky_A 18 AFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAM 97 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHH
Confidence 3667777788888888877777776665543 2222221 111122345556666666665433 45788999999
Q ss_pred HHHH--------cCCHHHHHHHHHHHHHhcCCCCCch--------hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008613 80 ELYS--------EGRFSNALQKYLLAKKNLQGIHSSE--------GRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY 143 (559)
Q Consensus 80 ~~~k--------~g~y~eAi~~Y~kAL~l~p~~~~~e--------~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l 143 (559)
+++. .|+|++|+..|.+++...|.++... ........++++|.||.+.|+|++|+..|+++++.
T Consensus 98 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 177 (261)
T 3qky_A 98 CYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDA 177 (261)
T ss_dssp HHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999 9999999999999999999876511 01111222389999999999999999999999999
Q ss_pred CCC---CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHhhcCC
Q 008613 144 DAK---NVKALYRRGQAYKDI----------GRLEEAVSDLSNAHEVSPDDG---TIADVLRDAKEILMKEDGH 201 (559)
Q Consensus 144 dP~---~~kal~~rG~A~~~l----------g~~eeAi~dlekAl~l~P~~~---~a~~~L~~a~~~l~~~~~~ 201 (559)
+|+ .+.+++++|.+|..+ |++++|+..|+++++.+|+++ .+...+..+...+++.++.
T Consensus 178 ~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 178 YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhh
Confidence 998 568999999999988 999999999999999999985 4556666777777666543
No 48
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.44 E-value=3.5e-13 Score=139.25 Aligned_cols=145 Identities=15% Similarity=0.064 Sum_probs=122.4
Q ss_pred HHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHH
Q 008613 56 MRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIK 135 (559)
Q Consensus 56 a~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~ 135 (559)
+...+...+...+..+..+..+|.++++.|+|++|+..|.+++.+.|.+.. +|++++.+|.+.|++++|+.
T Consensus 52 a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~l~~~~~~~g~~~~A~~ 122 (388)
T 1w3b_A 52 SAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFID---------GYINLAAALVAAGDMEGAVQ 122 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHSCSSHHHH
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHH---------HHHHHHHHHHHcCCHHHHHH
Confidence 334444444455666888999999999999999999999999999888754 89999999999999999999
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613 136 VGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 209 (559)
Q Consensus 136 ~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i 209 (559)
.|.++++++|++..++..+|.++..+|++++|+..|++++.++|++..++..++.+....++...+...+++.+
T Consensus 123 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 196 (388)
T 1w3b_A 123 AYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAV 196 (388)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888777666555444444443
No 49
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.44 E-value=1.7e-12 Score=124.45 Aligned_cols=157 Identities=11% Similarity=0.073 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHhHHhHHH-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCc-----------------h
Q 008613 53 IATMRARIDAQMNYEFNA-------AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSS-----------------E 108 (559)
Q Consensus 53 ~~aa~~~l~~~~~~~~~~-------a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~-----------------e 108 (559)
+..+...+...+...+.. +..+..+|.+++..|+|++|+..|.+++.+.|..... .
T Consensus 54 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 133 (258)
T 3uq3_A 54 YETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAY 133 (258)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHH
Confidence 344555555555544443 7899999999999999999999999999976541000 0
Q ss_pred hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008613 109 GRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVL 188 (559)
Q Consensus 109 ~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L 188 (559)
.......+++++|.+|...|+|++|+..|+++++++|+++.+++.+|.+|..+|++++|+..|++++.++|++..++..+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 213 (258)
T 3uq3_A 134 VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRK 213 (258)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 12234568999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCccchh
Q 008613 189 RDAKEILMKEDGHHGPRGLLI 209 (559)
Q Consensus 189 ~~a~~~l~~~~~~~~~~~~~i 209 (559)
+.+...+++.+.+...+++++
T Consensus 214 ~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 214 ATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHH
Confidence 999999887776666666555
No 50
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.44 E-value=2.1e-13 Score=126.50 Aligned_cols=104 Identities=19% Similarity=0.117 Sum_probs=94.4
Q ss_pred HcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCCCHHHHH
Q 008613 83 SEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY----------DECIKVGSEVLAYDAKNVKALY 152 (559)
Q Consensus 83 k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y----------~eAi~~~~~AL~ldP~~~kal~ 152 (559)
+.++|++|+..|.++++++|.++. +|+|+|.|+..++++ ++||..|++||+++|++..+|+
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~ae---------a~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~ 84 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDAD---------NLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVW 84 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHH
Confidence 446799999999999999999876 999999999999875 5999999999999999999999
Q ss_pred HHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008613 153 RRGQAYKDIG-----------RLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 195 (559)
Q Consensus 153 ~rG~A~~~lg-----------~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l 195 (559)
++|.+|..+| +|++|+.+|++|++++|++...+..+..+.+..
T Consensus 85 ~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ka~ 138 (158)
T 1zu2_A 85 CIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAP 138 (158)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhCH
Confidence 9999999885 899999999999999999998888877765544
No 51
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.44 E-value=2.1e-13 Score=154.16 Aligned_cols=127 Identities=14% Similarity=-0.010 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008613 70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK 149 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~k 149 (559)
.+..+..+|.+++..|+|++|+..|+++++++|.+.. +|+++|.+|..+|+|++|+.+|+++++++|+++.
T Consensus 432 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~---------a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~ 502 (681)
T 2pzi_A 432 SVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWR---------LVWYRAVAELLTGDYDSATKHFTEVLDTFPGELA 502 (681)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSH
T ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence 3555666666666666666666666666666665543 6666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCcc
Q 008613 150 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRG 206 (559)
Q Consensus 150 al~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~ 206 (559)
+|+++|.+|..+|+|++ +.+|+++++++|++..++..++.+...+++.+++...++
T Consensus 503 ~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 503 PKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp HHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66666666666666666 666666666666666666666666665555544333333
No 52
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.44 E-value=6.1e-13 Score=133.73 Aligned_cols=102 Identities=26% Similarity=0.375 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 150 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka 150 (559)
+..++.+|+.++..|+|++|+..|.+++.+.|.++. +|+++|.||.++|+|++|+.+|+++++++|+++.+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 74 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAV---------YYTNRALCYLKMQQPEQALADCRRALELDGQSVKA 74 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHH---------HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHH
Confidence 678899999999999999999999999999998754 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008613 151 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181 (559)
Q Consensus 151 l~~rG~A~~~lg~~eeAi~dlekAl~l~P~~ 181 (559)
++++|.+|..+|++++|+.+|++++.++|++
T Consensus 75 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 75 HFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 9999999999999999999999999999976
No 53
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.43 E-value=1.5e-12 Score=129.42 Aligned_cols=149 Identities=13% Similarity=0.100 Sum_probs=128.5
Q ss_pred HHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHH
Q 008613 54 ATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDEC 133 (559)
Q Consensus 54 ~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eA 133 (559)
..+...++..+...+..+..+...|.+++..|+|++|+..|.+++.+.|.++. +++++|.+|...|++++|
T Consensus 155 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~~~~A 225 (327)
T 3cv0_A 155 RECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQ---------LWNKLGATLANGNRPQEA 225 (327)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH---------HHHHHHHHHHHcCCHHHH
Confidence 34444455555555556788999999999999999999999999999888754 899999999999999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHHHhhcCC
Q 008613 134 IKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD------------DGTIADVLRDAKEILMKEDGH 201 (559)
Q Consensus 134 i~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~------------~~~a~~~L~~a~~~l~~~~~~ 201 (559)
+..|+++++++|+++.+++.+|.+|..+|++++|+..|++++.++|+ +..++..++.+...+++.+.+
T Consensus 226 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 305 (327)
T 3cv0_A 226 LDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLV 305 (327)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHH
Confidence 99999999999999999999999999999999999999999999999 788999999999888877665
Q ss_pred CCCccchhhh
Q 008613 202 HGPRGLLIEE 211 (559)
Q Consensus 202 ~~~~~~~i~e 211 (559)
...+++.++.
T Consensus 306 ~~~~~~~l~~ 315 (327)
T 3cv0_A 306 ELTYAQNVEP 315 (327)
T ss_dssp HHHTTCCSHH
T ss_pred HHHHHHHHHh
Confidence 5545444433
No 54
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.43 E-value=4.4e-13 Score=151.65 Aligned_cols=132 Identities=14% Similarity=0.021 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHH
Q 008613 53 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE 132 (559)
Q Consensus 53 ~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~e 132 (559)
+..+...++..++..+..+..+..+|.+++..|+|++|+..|+++++++|.++. +|+++|.||.++|+|++
T Consensus 449 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~---------~~~~lg~~~~~~g~~~~ 519 (681)
T 2pzi_A 449 VAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELA---------PKLALAATAELAGNTDE 519 (681)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSH---------HHHHHHHHHHHHTCCCT
T ss_pred HHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH---------HHHHHHHHHHHcCChHH
Confidence 344556666666667777899999999999999999999999999999999876 99999999999999999
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008613 133 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI 194 (559)
Q Consensus 133 Ai~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~ 194 (559)
+.+|+++++++|+++.+|+++|.+|..+|++++|+.+|+++++++|++..++..++.+...
T Consensus 520 -~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 520 -HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp -TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred -HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999999888887644
No 55
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.43 E-value=4e-13 Score=145.26 Aligned_cols=162 Identities=14% Similarity=0.029 Sum_probs=132.4
Q ss_pred hCCCh-HHHHHHHHHHHccCcHHHH----------------HHHHHHHHHhHHhHHHHHHHHHHHHHHHHc---------
Q 008613 31 THTPP-EEVAEIGEKLANASPEEIA----------------TMRARIDAQMNYEFNAAKMLKKQGNELYSE--------- 84 (559)
Q Consensus 31 ~~~~p-ee~~~~~~~~~~~~pee~~----------------aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~--------- 84 (559)
...+. ++......++....|.... .+...++..+...+. ...+..+|.+++..
T Consensus 114 ~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~ 192 (474)
T 4abn_A 114 VTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHS 192 (474)
T ss_dssp SSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHH
T ss_pred hccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhh
Confidence 34455 6666666666666655322 223344444444444 57788889999888
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHcCC---CCHHHHHH
Q 008613 85 GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT--------KQYDECIKVGSEVLAYDA---KNVKALYR 153 (559)
Q Consensus 85 g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylkl--------g~y~eAi~~~~~AL~ldP---~~~kal~~ 153 (559)
|+|++|+..|.+++++.|.++. +|+++|.+|..+ |+|++|+..|+++++++| +++.+|++
T Consensus 193 g~~~~A~~~~~~al~~~p~~~~---------~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 263 (474)
T 4abn_A 193 RHVMDSVRQAKLAVQMDVLDGR---------SWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLN 263 (474)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHH
Confidence 9999999999999999888754 999999999999 999999999999999999 99999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCC
Q 008613 154 RGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHH 202 (559)
Q Consensus 154 rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~ 202 (559)
+|.+|..+|+|++|+.+|+++++++|++..++..++.+...+++..++.
T Consensus 264 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi 312 (474)
T 4abn_A 264 RATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLL 312 (474)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988888765543
No 56
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.43 E-value=1.6e-11 Score=123.03 Aligned_cols=122 Identities=28% Similarity=0.399 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008613 73 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALY 152 (559)
Q Consensus 73 ~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~ 152 (559)
.....|..+++.|+|++|+..|.+++...|.++ .....++.++|.||.+.|+|++|+..|+++++++|+++.+++
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 310 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKTEPSVA-----EYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALK 310 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSH-----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch-----HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHH
Confidence 345679999999999999999999999988763 234457889999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 008613 153 RRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED 199 (559)
Q Consensus 153 ~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~ 199 (559)
.+|.+|..+|++++|+.+|+++++++|++..++..|..++..+++.+
T Consensus 311 ~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 357 (359)
T 3ieg_A 311 DRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQSQ 357 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999998887654
No 57
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.42 E-value=2.7e-12 Score=122.41 Aligned_cols=148 Identities=14% Similarity=0.071 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHH
Q 008613 53 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE 132 (559)
Q Consensus 53 ~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~e 132 (559)
+..+...++..+...+.....+...|.+++..|+|++|+..|.+++++.|.++. +++++|.+|...|++++
T Consensus 73 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~~a~~~~~~~~~~~ 143 (243)
T 2q7f_A 73 LERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGD---------LFYMLGTVLVKLEQPKL 143 (243)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHH---------HHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHhccHHH
Confidence 334445555555555556788899999999999999999999999999887654 88999999999999999
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613 133 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 209 (559)
Q Consensus 133 Ai~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i 209 (559)
|+..+.++++++|+++.+++.+|.+|...|++++|+..|++++.++|++..++..++.+....++...+...+++.+
T Consensus 144 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 220 (243)
T 2q7f_A 144 ALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAI 220 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998888776665544444444
No 58
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.42 E-value=5.7e-12 Score=125.35 Aligned_cols=140 Identities=16% Similarity=0.155 Sum_probs=118.3
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHH
Q 008613 55 TMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 134 (559)
Q Consensus 55 aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi 134 (559)
.+...+...+...+..+..+...|.+++..|+|++|+..|.+++.+.+.............+++++|.+|...|+|++|+
T Consensus 177 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 177 LAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 34444555555555568889999999999999999999999999998543322111222348999999999999999999
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008613 135 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI 194 (559)
Q Consensus 135 ~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~ 194 (559)
..|+++++++|+++.+++.+|.+|..+|++++|+..|+++++++|++..++..++.+...
T Consensus 257 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 316 (330)
T 3hym_B 257 DYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEM 316 (330)
T ss_dssp HHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988887643
No 59
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.42 E-value=3.3e-13 Score=145.97 Aligned_cols=149 Identities=10% Similarity=0.082 Sum_probs=133.6
Q ss_pred HHH-HHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHc--
Q 008613 51 EEI-ATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT-- 127 (559)
Q Consensus 51 ee~-~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylkl-- 127 (559)
.++ ..+...++..++..+..+..+..+|.+|+..|+|++|+.+|.+++++.|. +. +|+++|.+|..+
T Consensus 116 g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~---------~~~~lg~~~~~~~~ 185 (474)
T 4abn_A 116 PDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KV---------SLQNLSMVLRQLQT 185 (474)
T ss_dssp SSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HH---------HHHHHHHHHTTCCC
T ss_pred cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HH---------HHHHHHHHHHHhcc
Confidence 344 56777777777777888999999999999999999999999999999776 23 899999999999
Q ss_pred -------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCC---CCHHHHHHHH
Q 008613 128 -------KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDI--------GRLEEAVSDLSNAHEVSP---DDGTIADVLR 189 (559)
Q Consensus 128 -------g~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~l--------g~~eeAi~dlekAl~l~P---~~~~a~~~L~ 189 (559)
|+|++|+..|+++++++|+++.+|+++|.+|..+ |++++|+..|++++.++| ++..++..++
T Consensus 186 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg 265 (474)
T 4abn_A 186 DSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRA 265 (474)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHH
T ss_pred CChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHH
Confidence 9999999999999999999999999999999999 999999999999999999 9999999999
Q ss_pred HHHHHHHhhcCCCCCccchh
Q 008613 190 DAKEILMKEDGHHGPRGLLI 209 (559)
Q Consensus 190 ~a~~~l~~~~~~~~~~~~~i 209 (559)
.+...+++..++...+++++
T Consensus 266 ~~~~~~g~~~~A~~~~~~al 285 (474)
T 4abn_A 266 TLHKYEESYGEALEGFSQAA 285 (474)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 99999887776655555554
No 60
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.42 E-value=2.2e-13 Score=117.82 Aligned_cols=106 Identities=18% Similarity=0.076 Sum_probs=88.7
Q ss_pred HcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 008613 83 SEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIG 162 (559)
Q Consensus 83 k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg 162 (559)
..|+|++|+.+|.+++++.+.+|. ...+++++|.||..+|+|++|+..|+++++++|+++.+++++|.+|..+|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 75 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKD------LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLG 75 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHcCCCCcc------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC
Confidence 368999999999999998422221 34599999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008613 163 RLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI 194 (559)
Q Consensus 163 ~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~ 194 (559)
++++|+..|++++.++|+++.+......+...
T Consensus 76 ~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~~ 107 (117)
T 3k9i_A 76 RYEQGVELLLKIIAETSDDETIQSYKQAILFY 107 (117)
T ss_dssp CHHHHHHHHHHHHHHHCCCHHHHHTHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 99999999999999999998876655444433
No 61
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.41 E-value=8.1e-13 Score=124.62 Aligned_cols=128 Identities=16% Similarity=0.090 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008613 70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK 149 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~k 149 (559)
.+..++.+|..++..|+|++|+..|.+++. + . ..+|+++|.||...|+|++|+..|.++++++|+++.
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~--~-~---------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 72 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQD--P-H---------SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV 72 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSSS--C-C---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHcC--C-C---------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchH
Confidence 466788999999999999999999999952 2 2 348999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613 150 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG----------------TIADVLRDAKEILMKEDGHHGPRGLLI 209 (559)
Q Consensus 150 al~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~----------------~a~~~L~~a~~~l~~~~~~~~~~~~~i 209 (559)
+|+++|.+|..+|++++|+.+|++++.+.|++. .++..++.+...+++...+...+++++
T Consensus 73 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 73 AYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999999999999999999999999999988876 889999999888877666554444444
No 62
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.41 E-value=3.9e-12 Score=123.63 Aligned_cols=114 Identities=20% Similarity=0.065 Sum_probs=105.2
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008613 67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 146 (559)
Q Consensus 67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~ 146 (559)
.+..+..+..+|.+++..|+|++|+..|.+++.+.|.++. +|+++|.+|...|+|++|+..|.++++++|+
T Consensus 39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 109 (275)
T 1xnf_A 39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPE---------VFNYLGIYLTQAGNFDAAYEAFDSVLELDPT 109 (275)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHH---------HHHHHHHHHHHccCHHHHHHHHHHHHhcCcc
Confidence 3456889999999999999999999999999999888754 8999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008613 147 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLR 189 (559)
Q Consensus 147 ~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~ 189 (559)
++.+++.+|.+|..+|++++|+..|++++.++|++......+.
T Consensus 110 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 152 (275)
T 1xnf_A 110 YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY 152 (275)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 9999999999999999999999999999999999975544443
No 63
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.40 E-value=6.5e-12 Score=119.74 Aligned_cols=131 Identities=15% Similarity=0.130 Sum_probs=113.1
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHH
Q 008613 55 TMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 134 (559)
Q Consensus 55 aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi 134 (559)
.+...+...++..+.....+...|.+++..|+|++|+..|.+++.+.|.++. +++++|.+|.+.|+|++|+
T Consensus 109 ~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 109 EAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTE---------ARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHH---------HHHHHHHHHHHcCCHHHHH
Confidence 3344444444444445778999999999999999999999999999887754 8999999999999999999
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008613 135 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI 194 (559)
Q Consensus 135 ~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~ 194 (559)
..+.++++++|+++.+++.+|.+|..+|++++|+..|++++.++|++..++..+..+...
T Consensus 180 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 180 SQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHH 239 (243)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC----
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999988877766543
No 64
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.40 E-value=3.2e-13 Score=146.59 Aligned_cols=129 Identities=20% Similarity=0.254 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008613 69 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV 148 (559)
Q Consensus 69 ~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ 148 (559)
..+..++.+|+.+++.|+|++|+.+|++++++.|.+.. +|+++|.||.++|+|++|+.+|+++++++|+++
T Consensus 4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~---------~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 74 (477)
T 1wao_1 4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAI---------YYGNRSLAYLRTECYGYALGDATRAIELDKKYI 74 (477)
T ss_dssp HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHH---------HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH
Confidence 34677888999999999999999999999999888754 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHHHhhcCCCCCcc
Q 008613 149 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA--KEILMKEDGHHGPRG 206 (559)
Q Consensus 149 kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a--~~~l~~~~~~~~~~~ 206 (559)
.+|+++|.+|..+|++++|+..|+++++++|++..++..++.+ ....++.+++...++
T Consensus 75 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 75 KGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999999999888 555566666554444
No 65
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.40 E-value=7.4e-13 Score=145.49 Aligned_cols=134 Identities=12% Similarity=0.026 Sum_probs=115.7
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008613 67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 146 (559)
Q Consensus 67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~ 146 (559)
.+..+..+..+|.+++..|+|++|+..|++++++.|.++. +|+++|.+|..+|+|++|+..|+++++++|+
T Consensus 19 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 89 (568)
T 2vsy_A 19 RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPE---------AVARLGRVRWTQQRHAEAAVLLQQASDAAPE 89 (568)
T ss_dssp --CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 3334788999999999999999999999999999888754 8999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---HhhcCCCCCccchh
Q 008613 147 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL---MKEDGHHGPRGLLI 209 (559)
Q Consensus 147 ~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l---~~~~~~~~~~~~~i 209 (559)
++.+++++|.+|..+|++++|+..|+++++++|++..++..++.+...+ ++.+++...+++.+
T Consensus 90 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 90 HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999888887 66555444444443
No 66
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.40 E-value=4.6e-12 Score=118.84 Aligned_cols=121 Identities=12% Similarity=-0.058 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH--cCCCC
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT-KQYDECIKVGSEVLA--YDAKN 147 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylkl-g~y~eAi~~~~~AL~--ldP~~ 147 (559)
...+...|.+++..|+|++|+..|.+++.+.|.+.. ++++++.+|... |++++|+..++++++ .+|.+
T Consensus 42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 112 (225)
T 2vq2_A 42 ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAE---------INNNYGWFLCGRLNRPAESMAYFDKALADPTYPTP 112 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCH
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH---------HHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcch
Confidence 455566666666666666666666666666555432 566666666666 666666666666666 44555
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcC
Q 008613 148 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG 200 (559)
Q Consensus 148 ~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~ 200 (559)
..+++.+|.+|...|++++|+..|++++.++|++..++..++.+....++...
T Consensus 113 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 113 YIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 66666666666666666666666666666666666666666666555554443
No 67
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.40 E-value=1.8e-12 Score=128.96 Aligned_cols=145 Identities=8% Similarity=-0.111 Sum_probs=126.8
Q ss_pred HHHHHHHHhHHhHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHH
Q 008613 56 MRARIDAQMNYEFNAAKMLKKQGNELYSEG-RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 134 (559)
Q Consensus 56 a~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g-~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi 134 (559)
+...++..+...+..+..+...|.+++..| +|++|+.+|.+++.+.|.++. +|+++|.+|...|+|++|+
T Consensus 75 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~l~~~~~~~~~~~~A~ 145 (330)
T 3hym_B 75 LFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGP---------AWIAYGHSFAVESEHDQAM 145 (330)
T ss_dssp HHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTH---------HHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHH---------HHHHHHHHHHHccCHHHHH
Confidence 344444445555556788999999999999 999999999999999988765 8999999999999999999
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613 135 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 209 (559)
Q Consensus 135 ~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i 209 (559)
..|.++++++|++..+++.+|.+|...|++++|+..|++++.++|++..++..++.+....++...+...+++.+
T Consensus 146 ~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 220 (330)
T 3hym_B 146 AAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDAL 220 (330)
T ss_dssp HHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999888877665544444444
No 68
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.40 E-value=4.8e-14 Score=129.74 Aligned_cols=110 Identities=12% Similarity=-0.018 Sum_probs=100.4
Q ss_pred HHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008613 92 QKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDL 171 (559)
Q Consensus 92 ~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dl 171 (559)
..|.+++.++|.++. +++++|.+|++.|+|++|+..|+++++++|+++.+|+.+|.+|..+|+|++|+.+|
T Consensus 23 ~~l~~al~l~p~~~~---------~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~ 93 (151)
T 3gyz_A 23 ATLKDINAIPDDMMD---------DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLY 93 (151)
T ss_dssp CCTGGGCCSCHHHHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHhCCCHHHHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHH
Confidence 446777777666644 89999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchhh
Q 008613 172 SNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIE 210 (559)
Q Consensus 172 ekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i~ 210 (559)
++++.++|+++.++..++.+...+++..++...+++++.
T Consensus 94 ~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 94 AVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999998887777777764
No 69
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.40 E-value=5.4e-12 Score=121.70 Aligned_cols=147 Identities=12% Similarity=-0.002 Sum_probs=119.2
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHH
Q 008613 55 TMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 134 (559)
Q Consensus 55 aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi 134 (559)
.+...+...++..+.....+...|.+++..|+|++|+.+|.+++. .+..+. ...+++++|.+|...|++++|+
T Consensus 89 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~------~~~~~~~la~~~~~~g~~~~A~ 161 (252)
T 2ho1_A 89 LADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ-DTLYPE------RSRVFENLGLVSLQMKKPAQAK 161 (252)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-CTTCTT------HHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh-CccCcc------cHHHHHHHHHHHHHcCCHHHHH
Confidence 344444444444555577888999999999999999999999998 222222 3458899999999999999999
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccch
Q 008613 135 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLL 208 (559)
Q Consensus 135 ~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~ 208 (559)
..+.++++++|.++.+++.+|.+|..+|++++|+..|++++.++|++..++..+..+....++.+.+...+++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 235 (252)
T 2ho1_A 162 EYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQL 235 (252)
T ss_dssp HHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888888887776655544333333
No 70
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.39 E-value=1.6e-12 Score=130.98 Aligned_cols=155 Identities=12% Similarity=0.010 Sum_probs=128.3
Q ss_pred HHHhhCCChHHHHHHHHHHHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCC
Q 008613 27 AEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS 106 (559)
Q Consensus 27 ~e~l~~~~pee~~~~~~~~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~ 106 (559)
...+...+.++......++....|++ +..+..+|.++...|++++|+..|.+++...|..
T Consensus 125 ~~~~~~g~~~~A~~~~~~al~~~P~~------------------~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~-- 184 (287)
T 3qou_A 125 MQLMQESNYTDALPLLXDAWQLSNQN------------------GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDT-- 184 (287)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTTSC------------------HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSH--
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcc------------------hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcch--
Confidence 33445555555555555555555555 8899999999999999999999999999987743
Q ss_pred chhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHH
Q 008613 107 SEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD--GTI 184 (559)
Q Consensus 107 ~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~--~~a 184 (559)
...+.+.+..+...+++++|+..+++++.++|+++.+++.+|.+|...|++++|+..|++++.++|++ ..+
T Consensus 185 -------~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 185 -------RYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp -------HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred -------HHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 23666777888899999999999999999999999999999999999999999999999999999998 889
Q ss_pred HHHHHHHHHHHHhhcCCCCCccch
Q 008613 185 ADVLRDAKEILMKEDGHHGPRGLL 208 (559)
Q Consensus 185 ~~~L~~a~~~l~~~~~~~~~~~~~ 208 (559)
+..+..+...+++...+...+++.
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHH
Confidence 999999999887665544444443
No 71
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.39 E-value=4e-12 Score=122.67 Aligned_cols=158 Identities=10% Similarity=-0.015 Sum_probs=124.5
Q ss_pred HHhhCCChHHHHHHHHHHHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCc
Q 008613 28 EQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSS 107 (559)
Q Consensus 28 e~l~~~~pee~~~~~~~~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~ 107 (559)
..+...+.++......++....|.. ......+..+|.++++.|+|++|+..|.++++..|.++.
T Consensus 13 ~~~~~g~~~~A~~~~~~~~~~~p~~---------------~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~- 76 (225)
T 2yhc_A 13 QKLQDGNWRQAITQLEALDNRYPFG---------------PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN- 76 (225)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTS---------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT-
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC---------------hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc-
Confidence 3444455555555555444443332 123578889999999999999999999999999998764
Q ss_pred hhhhhHHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHcCCCCHHHH-----------------H
Q 008613 108 EGRTLLLACSLNSMSCYLK------------------TKQYDECIKVGSEVLAYDAKNVKAL-----------------Y 152 (559)
Q Consensus 108 e~~~l~~~~~~nlA~~ylk------------------lg~y~eAi~~~~~AL~ldP~~~kal-----------------~ 152 (559)
...+++++|.||.. .|++++|+..|+++++.+|+++.++ +
T Consensus 77 -----~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~ 151 (225)
T 2yhc_A 77 -----IDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEY 151 (225)
T ss_dssp -----HHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHH
Confidence 34578889999886 5799999999999999999987544 6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHhhcCCCCCcc
Q 008613 153 RRGQAYKDIGRLEEAVSDLSNAHEVSPDDG---TIADVLRDAKEILMKEDGHHGPRG 206 (559)
Q Consensus 153 ~rG~A~~~lg~~eeAi~dlekAl~l~P~~~---~a~~~L~~a~~~l~~~~~~~~~~~ 206 (559)
.+|.+|...|+|++|+..|+++++.+|+++ .++..++.+...+++...+...++
T Consensus 152 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~ 208 (225)
T 2yhc_A 152 SVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAK 208 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 789999999999999999999999999986 578888888888877665444443
No 72
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.39 E-value=8.8e-12 Score=126.68 Aligned_cols=156 Identities=10% Similarity=-0.054 Sum_probs=131.2
Q ss_pred HHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchh------------------------
Q 008613 54 ATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEG------------------------ 109 (559)
Q Consensus 54 ~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~------------------------ 109 (559)
..+...+...+...+..+..+..+|.++...|+|++|+..|.+++.+.|.+.....
T Consensus 115 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 115 LLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 34455555555556666888999999999999999999999999998876543110
Q ss_pred ----------------hhh--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008613 110 ----------------RTL--LLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDL 171 (559)
Q Consensus 110 ----------------~~l--~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dl 171 (559)
... ...+++++|.+|...|+|++|+..|+++++++|+++.+++.+|.+|..+|++++|+..|
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 274 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAY 274 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 001 35688999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613 172 SNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 209 (559)
Q Consensus 172 ekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i 209 (559)
++++.++|++..++..++.+...+++...+...+++++
T Consensus 275 ~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 312 (368)
T 1fch_A 275 RRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEAL 312 (368)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999988777665555555
No 73
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.39 E-value=1.4e-11 Score=115.46 Aligned_cols=139 Identities=12% Similarity=0.018 Sum_probs=118.2
Q ss_pred HHHHHHHHHHhHHhHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHH
Q 008613 54 ATMRARIDAQMNYEFNAAKMLKKQGNELYSE-GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE 132 (559)
Q Consensus 54 ~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~-g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~e 132 (559)
..+...++..+...+.....+...|.+++.. |+|++|+..|.+++. .+..+. ...+++++|.+|...|++++
T Consensus 59 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~------~~~~~~~l~~~~~~~~~~~~ 131 (225)
T 2vq2_A 59 DKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALA-DPTYPT------PYIANLNKGICSAKQGQFGL 131 (225)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-STTCSC------HHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-CcCCcc------hHHHHHHHHHHHHHcCCHHH
Confidence 3444555555555555678899999999999 999999999999999 444443 34589999999999999999
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHhhc
Q 008613 133 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP-DDGTIADVLRDAKEILMKED 199 (559)
Q Consensus 133 Ai~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P-~~~~a~~~L~~a~~~l~~~~ 199 (559)
|+..+.++++++|+++.+++.+|.+|...|++++|+..|++++.++| ++..++..+..+....+..+
T Consensus 132 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (225)
T 2vq2_A 132 AEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQ 199 (225)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHH
Confidence 99999999999999999999999999999999999999999999999 99888877777766655443
No 74
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.39 E-value=9.5e-13 Score=109.79 Aligned_cols=102 Identities=15% Similarity=0.125 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CH
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK--NV 148 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~--~~ 148 (559)
+..+..+|.+++..|+|++|+.+|.+++.+.|.+.. +++++|.+|..+|+|++|+..++++++++|+ +.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 76 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESK---------YWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNK 76 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHH---------HHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchH
Confidence 456778999999999999999999999999888754 8999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC
Q 008613 149 KALYRRGQAYKDI-GRLEEAVSDLSNAHEVSPDD 181 (559)
Q Consensus 149 kal~~rG~A~~~l-g~~eeAi~dlekAl~l~P~~ 181 (559)
.+++.+|.+|..+ |++++|+..|++++..+|.+
T Consensus 77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 77 DVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 9999999999999 99999999999999999975
No 75
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.39 E-value=2.7e-13 Score=119.97 Aligned_cols=97 Identities=11% Similarity=0.034 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008613 113 LLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAK 192 (559)
Q Consensus 113 ~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~ 192 (559)
.+..|.++|.+|++.|+|++|+..|+++|+++|+++.+|+++|.+|..+|++++|+.+|+++++++|++..++..++.+.
T Consensus 12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 45589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCccchh
Q 008613 193 EILMKEDGHHGPRGLLI 209 (559)
Q Consensus 193 ~~l~~~~~~~~~~~~~i 209 (559)
..+++.+++...+++++
T Consensus 92 ~~~~~~~~A~~~~~~al 108 (126)
T 4gco_A 92 VAMREWSKAQRAYEDAL 108 (126)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 99998888777777766
No 76
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.38 E-value=2.3e-12 Score=125.49 Aligned_cols=193 Identities=15% Similarity=0.031 Sum_probs=136.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhCCChHHHHHHHHH-HHccCcHHHHHHHHHHHHHhHHh---HHHHHHHHHHHHHHHH
Q 008613 8 MRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEK-LANASPEEIATMRARIDAQMNYE---FNAAKMLKKQGNELYS 83 (559)
Q Consensus 8 l~~A~e~mk~m~pedl~~a~e~l~~~~pee~~~~~~~-~~~~~pee~~aa~~~l~~~~~~~---~~~a~~lk~~Gn~~~k 83 (559)
++.|...++....++....++.+-...|+........ .......++..+...++..+... ...+..+..+|.+++.
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 4555555566665555555554443443322111110 01111122333444444443311 1125568899999999
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 008613 84 EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGR 163 (559)
Q Consensus 84 ~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~ 163 (559)
.|+|++|+..|.+++.+.|.++. +|+++|.||...|+|++|+..|+++++++|+++.+++.+|..++..++
T Consensus 87 ~~~~~~A~~~~~~a~~~~~~~~~---------~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~ 157 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRDTTRLD---------MYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKE 157 (272)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCTH---------HHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHhcCcccHH---------HHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999998865 899999999999999999999999999999999999999955555569
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh---hcCCCCCccchh
Q 008613 164 LEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK---EDGHHGPRGLLI 209 (559)
Q Consensus 164 ~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~---~~~~~~~~~~~i 209 (559)
+++|+..|+++++++|++..++..++.+...+++ ...+...+++++
T Consensus 158 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 158 YVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 9999999999999999999999999999888866 333333444444
No 77
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.38 E-value=2.6e-12 Score=109.72 Aligned_cols=120 Identities=25% Similarity=0.307 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008613 72 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKAL 151 (559)
Q Consensus 72 ~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal 151 (559)
..+...|..++..|+|++|+..|.+++...|.+.. ++++++.+|...|++++|+..+.+++.++|.+..++
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 72 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE---------AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAW 72 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchh---------HHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHH
Confidence 45677899999999999999999999998776543 788899999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcC
Q 008613 152 YRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG 200 (559)
Q Consensus 152 ~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~ 200 (559)
+.+|.++...|++++|+..|++++.+.|++..++..++.+....++...
T Consensus 73 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 121 (136)
T 2fo7_A 73 YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDE 121 (136)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHH
Confidence 9999999999999999999999999999988888888877766554443
No 78
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.38 E-value=6.9e-12 Score=126.16 Aligned_cols=139 Identities=11% Similarity=-0.107 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCC
Q 008613 68 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT-KQYDECIKVGSEVLAYDAK 146 (559)
Q Consensus 68 ~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylkl-g~y~eAi~~~~~AL~ldP~ 146 (559)
...+..+.+.|.+|...|+|++|+.+|.+++.+.+.... ......+|.++|.+|... |+|++|+.+|++++++.|.
T Consensus 74 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~---~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~ 150 (292)
T 1qqe_A 74 DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ---FRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQ 150 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh
Confidence 345889999999999999999999999999999876543 223456899999999995 9999999999999999886
Q ss_pred C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHHHhhcCCCCCccchh
Q 008613 147 N------VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT-------IADVLRDAKEILMKEDGHHGPRGLLI 209 (559)
Q Consensus 147 ~------~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~-------a~~~L~~a~~~l~~~~~~~~~~~~~i 209 (559)
+ ..++.++|.+|..+|+|++|+..|++++.++|++.. ++..++.+...+++...+...+++.+
T Consensus 151 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 151 DQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred CCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5 578999999999999999999999999999987643 45667777777766655544444444
No 79
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.38 E-value=2.6e-12 Score=125.11 Aligned_cols=144 Identities=12% Similarity=0.020 Sum_probs=123.5
Q ss_pred HHHHHhhCCChHHHHHHHHHHHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 008613 25 CAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGI 104 (559)
Q Consensus 25 ~a~e~l~~~~pee~~~~~~~~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~ 104 (559)
.+...+...+.++......++....|.. +..+..+|.+++..|+|++|+..|.+++. .+.+
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~------------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~ 69 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKKYNS------------------PYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNA 69 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTTCCC------------------STTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCc------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCc
Confidence 3444556666777776666666666665 77889999999999999999999999999 4544
Q ss_pred CCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008613 105 HSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI 184 (559)
Q Consensus 105 ~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a 184 (559)
+. +...+|+++|.||...|+|++|+..|.++++++|+++.+++.+|.+|..+|++++|+..|++++.++|++..+
T Consensus 70 ~~-----~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 144 (272)
T 3u4t_A 70 TK-----AKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKV 144 (272)
T ss_dssp TT-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHH
T ss_pred hh-----HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHH
Confidence 33 2456799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-HHH
Q 008613 185 ADVLR-DAK 192 (559)
Q Consensus 185 ~~~L~-~a~ 192 (559)
+..++ .+.
T Consensus 145 ~~~l~~~~~ 153 (272)
T 3u4t_A 145 FYELGQAYY 153 (272)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 99888 443
No 80
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.38 E-value=4.6e-12 Score=122.18 Aligned_cols=136 Identities=10% Similarity=-0.026 Sum_probs=119.0
Q ss_pred HHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008613 62 AQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVL 141 (559)
Q Consensus 62 ~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL 141 (559)
..+...+..+..+...|.+++..|+|++|+..|.+++.+.|.+.. ++++++.+|...|+|++|+..|.+++
T Consensus 62 ~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~la~~~~~~g~~~~A~~~~~~~~ 132 (252)
T 2ho1_A 62 KALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNAR---------VLNNYGGFLYEQKRYEEAYQRLLEAS 132 (252)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHH---------HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 333333444788999999999999999999999999999887644 89999999999999999999999999
Q ss_pred H--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCcc
Q 008613 142 A--YDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRG 206 (559)
Q Consensus 142 ~--ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~ 206 (559)
+ .+|.++.+++.+|.+|...|++++|+..|++++.++|++..++..++.+....++...+...++
T Consensus 133 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 199 (252)
T 2ho1_A 133 QDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYD 199 (252)
T ss_dssp TCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9 8899999999999999999999999999999999999999999999998888776555433333
No 81
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.35 E-value=6.1e-11 Score=124.06 Aligned_cols=123 Identities=29% Similarity=0.403 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008613 72 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKAL 151 (559)
Q Consensus 72 ~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal 151 (559)
..+...|..++..|+|++|+..|.+++.+.|.++ .....+|++++.+|.+.|++++|+..|+++++++|+++.+|
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 332 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKTEPSIA-----EYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNAL 332 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSH-----HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcch-----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHH
Confidence 3445669999999999999999999999988753 23456899999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 008613 152 YRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED 199 (559)
Q Consensus 152 ~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~ 199 (559)
+.+|.+|..+|++++|+.+|+++++++|++..++..++.+...+++..
T Consensus 333 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 380 (450)
T 2y4t_A 333 KDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQ 380 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999999999999999988876654
No 82
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.35 E-value=1.5e-12 Score=120.73 Aligned_cols=156 Identities=15% Similarity=0.088 Sum_probs=119.1
Q ss_pred HHHHHhhCCChHHHHHHHHHHHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 008613 25 CAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGI 104 (559)
Q Consensus 25 ~a~e~l~~~~pee~~~~~~~~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~ 104 (559)
.+...+...+.++......++....|+ .+..+..+|.+++..|+|++|+..|.+++.+.| +
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~P~------------------~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~ 72 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDELQS------------------RGDVKLAKADCLLETKQFELAQELLATIPLEYQ-D 72 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHHHT------------------SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-C
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC------------------cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-C
Confidence 344445555566555555544444444 489999999999999999999999999999988 5
Q ss_pred CCchhhhhHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--
Q 008613 105 HSSEGRTLLLACSLNSMSCY-LKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD-- 181 (559)
Q Consensus 105 ~~~e~~~l~~~~~~nlA~~y-lklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~-- 181 (559)
+. .+..++.+. ...+...+|+..++++++++|+++.+++.+|.+|...|++++|+..|+++++++|++
T Consensus 73 ~~---------~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 143 (176)
T 2r5s_A 73 NS---------YKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQD 143 (176)
T ss_dssp HH---------HHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTT
T ss_pred hH---------HHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccCh
Confidence 42 233334332 233345568999999999999999999999999999999999999999999999975
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCccch
Q 008613 182 GTIADVLRDAKEILMKEDGHHGPRGLL 208 (559)
Q Consensus 182 ~~a~~~L~~a~~~l~~~~~~~~~~~~~ 208 (559)
..++..++.+...+++..++...+++.
T Consensus 144 ~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 144 GEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp THHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 568999999988887665544444443
No 83
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.34 E-value=4.5e-12 Score=122.30 Aligned_cols=110 Identities=13% Similarity=0.141 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH-
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK- 149 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~k- 149 (559)
+..++.+|..++..|+|++|+..|.+++...|..+. ...+++++|.||++.|+|++|+..|+++++++|+++.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~ 77 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPY------SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI 77 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTT------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcH
Confidence 567889999999999999999999999999887653 3458999999999999999999999999999999864
Q ss_pred --HHHHHHHHHHH------------------cCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008613 150 --ALYRRGQAYKD------------------IGRLEEAVSDLSNAHEVSPDDGTIAD 186 (559)
Q Consensus 150 --al~~rG~A~~~------------------lg~~eeAi~dlekAl~l~P~~~~a~~ 186 (559)
+++.+|.+|.. .|++++|+..|+++++.+|+++.++.
T Consensus 78 ~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~ 134 (225)
T 2yhc_A 78 DYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTD 134 (225)
T ss_dssp HHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHH
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence 89999999986 57899999999999999999875543
No 84
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.33 E-value=4.3e-11 Score=118.80 Aligned_cols=202 Identities=11% Similarity=-0.003 Sum_probs=149.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhCCChHHHHHHHHHH-HccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCC
Q 008613 8 MRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKL-ANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGR 86 (559)
Q Consensus 8 l~~A~e~mk~m~pedl~~a~e~l~~~~pee~~~~~~~~-~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~ 86 (559)
+..+...++....++....++.+....|+......... ......++..+...+...+...+.....+...|.++...|+
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~ 104 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 104 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCC
Confidence 56666666666666665555554444443322211110 01112233445555555555566667889999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCchh----------------------------------------hhhHHHHHHHHHHHHHH
Q 008613 87 FSNALQKYLLAKKNLQGIHSSEG----------------------------------------RTLLLACSLNSMSCYLK 126 (559)
Q Consensus 87 y~eAi~~Y~kAL~l~p~~~~~e~----------------------------------------~~l~~~~~~nlA~~ylk 126 (559)
|++|+..|.+++...|.+..... ......+++++|.+|..
T Consensus 105 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 184 (327)
T 3cv0_A 105 ANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNL 184 (327)
T ss_dssp HHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 99999999999988776542110 01124678899999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCcc
Q 008613 127 TKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRG 206 (559)
Q Consensus 127 lg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~ 206 (559)
.|++++|+..+.++++++|+++.+++.+|.+|...|++++|+..|++++.++|++..++..++.+...+++.+.+...++
T Consensus 185 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 264 (327)
T 3cv0_A 185 SNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLV 264 (327)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888877666555555
Q ss_pred chh
Q 008613 207 LLI 209 (559)
Q Consensus 207 ~~i 209 (559)
+.+
T Consensus 265 ~a~ 267 (327)
T 3cv0_A 265 RAI 267 (327)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 85
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.33 E-value=1.6e-11 Score=115.72 Aligned_cols=103 Identities=17% Similarity=0.148 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH--
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV-- 148 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~-- 148 (559)
+..+..+|.+++..|+|++|+..|.+++.++|.++. +|+++|.||..+|+|++|+.+|++++++.|++.
T Consensus 37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 107 (213)
T 1hh8_A 37 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV---------AYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLI 107 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEE
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchH---------HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHH
Confidence 568899999999999999999999999999888754 899999999999999999999999999888766
Q ss_pred --------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008613 149 --------------KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG 182 (559)
Q Consensus 149 --------------kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~ 182 (559)
.+++++|.+|..+|++++|+.+|++++.++|++.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 108 DYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp ECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred HHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 9999999999999999999999999999999763
No 86
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.33 E-value=1.4e-11 Score=123.59 Aligned_cols=202 Identities=10% Similarity=0.063 Sum_probs=143.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhCCChHHHHHHHHH-HHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCC
Q 008613 8 MRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEK-LANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGR 86 (559)
Q Consensus 8 l~~A~e~mk~m~pedl~~a~e~l~~~~pee~~~~~~~-~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~ 86 (559)
+..+...++....++....++.+-...|+........ .......++..+...++..+...+.....+...|.+++..|+
T Consensus 7 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (359)
T 3ieg_A 7 LELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGK 86 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCC
Confidence 3444455555555555554444433344332221111 001111233445556666666566667889999999999999
Q ss_pred HHHHHHHHHHHHHhcC---CCCCch---hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008613 87 FSNALQKYLLAKKNLQ---GIHSSE---GRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKD 160 (559)
Q Consensus 87 y~eAi~~Y~kAL~l~p---~~~~~e---~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~ 160 (559)
|++|+..|.+++.+.| .++... ..-.....+..+|.+|...|+|++|+..++++++++|+++.+++.+|.+|..
T Consensus 87 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (359)
T 3ieg_A 87 LDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIK 166 (359)
T ss_dssp HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 9999999999999877 443200 0000112234458999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613 161 IGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 209 (559)
Q Consensus 161 lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i 209 (559)
+|++++|+..|++++.++|++..++..++.+....++...+...+++.+
T Consensus 167 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 167 EGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp TTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888877665544444444
No 87
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.33 E-value=5.4e-13 Score=112.23 Aligned_cols=93 Identities=22% Similarity=0.289 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN--- 147 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~--- 147 (559)
+..+..+|.+++..|+|++|+..|.+++.+.|.++. +|+++|.||..+|+|++|+.+|+++++++|++
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 74 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPV---------GYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHV 74 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---------HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHH
Confidence 456666777777777777777777777777666543 67777777777777777777777777777776
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHH
Q 008613 148 ---VKALYRRGQAYKDIGRLEEAVSDLS 172 (559)
Q Consensus 148 ---~kal~~rG~A~~~lg~~eeAi~dle 172 (559)
..+++++|.++..+|++++|+..++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 75 AIRSKLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence 6777777777777776666665554
No 88
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.33 E-value=2.7e-11 Score=109.55 Aligned_cols=122 Identities=13% Similarity=0.125 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHH
Q 008613 53 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE 132 (559)
Q Consensus 53 ~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~e 132 (559)
+..+...++..+...+.....+...|..++..|+|++|+..|.+++.+.|.++. +++++|.+|...|++++
T Consensus 58 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~~a~~~~~~~~~~~ 128 (186)
T 3as5_A 58 VDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFN---------VRFRLGVALDNLGRFDE 128 (186)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHH---------HHHHHHHHHHHcCcHHH
Confidence 444555555555555556788999999999999999999999999999887644 89999999999999999
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008613 133 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT 183 (559)
Q Consensus 133 Ai~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~ 183 (559)
|+..+.++++++|+++.+++.+|.++...|++++|+..|++++.++|++..
T Consensus 129 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 129 AIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred HHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence 999999999999999999999999999999999999999999999987643
No 89
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.32 E-value=4.6e-11 Score=101.86 Aligned_cols=102 Identities=27% Similarity=0.406 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 150 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka 150 (559)
...+...|.+++..|++++|+..|.+++.+.|..+. ++++++.+|...|++++|+..+.++++++|.+..+
T Consensus 35 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 105 (136)
T 2fo7_A 35 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE---------AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 105 (136)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchH---------HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHH
Confidence 667888999999999999999999999999877643 88999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008613 151 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181 (559)
Q Consensus 151 l~~rG~A~~~lg~~eeAi~dlekAl~l~P~~ 181 (559)
++.+|.+|...|++++|+..|++++.++|++
T Consensus 106 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 106 WYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 9999999999999999999999999999863
No 90
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.30 E-value=9.7e-13 Score=119.57 Aligned_cols=110 Identities=7% Similarity=-0.036 Sum_probs=99.3
Q ss_pred HHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008613 91 LQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSD 170 (559)
Q Consensus 91 i~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~d 170 (559)
-..|.+++.+.|.+.. +++++|.+++..|+|++|+..|++++.++|+++.+|+.+|.+|..+|+|++|+.+
T Consensus 7 ~~~~~~al~~~p~~~~---------~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 77 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLE---------QLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHS 77 (148)
T ss_dssp CCSHHHHTTCCHHHHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhhHHHHHcCCHhhHH---------HHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3458888888776543 8999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613 171 LSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 209 (559)
Q Consensus 171 lekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i 209 (559)
|++++.++|+++.++..++.+...+++...+...+++++
T Consensus 78 ~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 78 YSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQ 116 (148)
T ss_dssp HHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999999999999988877666666655
No 91
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.29 E-value=1.5e-10 Score=117.06 Aligned_cols=118 Identities=12% Similarity=0.025 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHcC
Q 008613 69 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCY----LKTKQYDECIKVGSEVLAYD 144 (559)
Q Consensus 69 ~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~y----lklg~y~eAi~~~~~AL~ld 144 (559)
.....+..+|.++.+.|++++|+..|.+++++.|.+ .+.+++.++ ...|+|++|+..|+++++.+
T Consensus 128 ~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~-----------~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~ 196 (291)
T 3mkr_A 128 DSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDA-----------TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC 196 (291)
T ss_dssp CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----------HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCc-----------HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC
Confidence 346778889999999999999999999999997765 333444333 33489999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 008613 145 AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 197 (559)
Q Consensus 145 P~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~ 197 (559)
|+++.+|+.+|.+|..+|++++|+..|++++.++|+++.++..++.+...+++
T Consensus 197 p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~ 249 (291)
T 3mkr_A 197 SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGK 249 (291)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999988777654
No 92
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.29 E-value=1.3e-10 Score=112.87 Aligned_cols=86 Identities=12% Similarity=0.024 Sum_probs=70.8
Q ss_pred HHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHH
Q 008613 54 ATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDEC 133 (559)
Q Consensus 54 ~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eA 133 (559)
..+...++..+...+..+..+..+|.+++..|+|++|+.+|.+++.+.|.++. +++++|.||...|+|++|
T Consensus 60 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~la~~~~~~g~~~~A 130 (275)
T 1xnf_A 60 ALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY---------AHLNRGIALYYGGRDKLA 130 (275)
T ss_dssp HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH---------HHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccH---------HHHHHHHHHHHhccHHHH
Confidence 34444444444444445788899999999999999999999999999888765 899999999999999999
Q ss_pred HHHHHHHHHcCCCCH
Q 008613 134 IKVGSEVLAYDAKNV 148 (559)
Q Consensus 134 i~~~~~AL~ldP~~~ 148 (559)
+..|.++++++|++.
T Consensus 131 ~~~~~~a~~~~~~~~ 145 (275)
T 1xnf_A 131 QDDLLAFYQDDPNDP 145 (275)
T ss_dssp HHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHhCCCCh
Confidence 999999999988875
No 93
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.28 E-value=9.2e-11 Score=118.55 Aligned_cols=100 Identities=12% Similarity=0.092 Sum_probs=91.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008613 79 NELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAY 158 (559)
Q Consensus 79 n~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~ 158 (559)
+.+...|+|++|+..|.++++..|.++. +|+++|.||.++|+|++|+..++++++++|+++.+++++|.++
T Consensus 174 ~l~~~~~~~~eA~~~~~~~l~~~p~~~~---------~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~ 244 (291)
T 3mkr_A 174 SLAAGGEKLQDAYYIFQEMADKCSPTLL---------LLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLS 244 (291)
T ss_dssp HHHHCTTHHHHHHHHHHHHHHHSCCCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHhCchHHHHHHHHHHHHHHhCCCcHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4445569999999999999999888754 9999999999999999999999999999999999999999999
Q ss_pred HHcCCHHH-HHHHHHHHHHhCCCCHHHHHH
Q 008613 159 KDIGRLEE-AVSDLSNAHEVSPDDGTIADV 187 (559)
Q Consensus 159 ~~lg~~ee-Ai~dlekAl~l~P~~~~a~~~ 187 (559)
..+|++++ +...++++++++|+++.+...
T Consensus 245 ~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~ 274 (291)
T 3mkr_A 245 QHLGKPPEVTNRYLSQLKDAHRSHPFIKEY 274 (291)
T ss_dssp HHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 99999987 568889999999999987653
No 94
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.27 E-value=7.1e-11 Score=123.58 Aligned_cols=131 Identities=13% Similarity=0.011 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH-
Q 008613 70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV- 148 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~- 148 (559)
.+..+..+|.+++..|+|++|+..|.+++++.|.++. +++++|.+|.++|++++|+..|+++++++|++.
T Consensus 59 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 129 (450)
T 2y4t_A 59 NYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTA---------ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENE 129 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Confidence 3777777888888888888888888888887776643 777788888888888888888888888887776
Q ss_pred --HHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613 149 --KALYRR------------GQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 209 (559)
Q Consensus 149 --kal~~r------------G~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i 209 (559)
.++..+ |.++...|++++|+..|++++.++|++..++..++.+....++...+...+.+.+
T Consensus 130 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 204 (450)
T 2y4t_A 130 EKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAAS 204 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 554443 6667778888888888888888888877777777777777766655444444433
No 95
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.26 E-value=2.1e-11 Score=104.44 Aligned_cols=101 Identities=12% Similarity=0.079 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHH
Q 008613 88 SNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEA 167 (559)
Q Consensus 88 ~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeA 167 (559)
.+|+..|.+++...|.++. +|+++|.+|...|+|++|+..|.++++++|+++.+|+.+|.+|..+|++++|
T Consensus 2 ~~a~~~~~~al~~~p~~~~---------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 72 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNML---------LRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGA 72 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred hHHHHHHHHHHHhCCCcHH---------HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 3689999999999988754 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCC--CHHHHHHHHHHHHHHHh
Q 008613 168 VSDLSNAHEVSPD--DGTIADVLRDAKEILMK 197 (559)
Q Consensus 168 i~dlekAl~l~P~--~~~a~~~L~~a~~~l~~ 197 (559)
+..|++++.++|+ +......+..+...+++
T Consensus 73 ~~~~~~al~~~~~~~~~~~~~~l~~~l~~l~~ 104 (115)
T 2kat_A 73 RQAWESGLAAAQSRGDQQVVKELQVFLRRLAR 104 (115)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHhcc
Confidence 9999999999884 45556666666555543
No 96
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.25 E-value=3.9e-12 Score=117.08 Aligned_cols=123 Identities=10% Similarity=-0.001 Sum_probs=105.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008613 78 GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQA 157 (559)
Q Consensus 78 Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A 157 (559)
+..++..|+|++|+..|.+++...|.++. +|+++|.+|...|+|++|+..|.++++++|+++.+++.+|.+
T Consensus 17 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 87 (177)
T 2e2e_A 17 LHQFASQQNPEAQLQALQDKIRANPQNSE---------QWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATV 87 (177)
T ss_dssp TCCCC-----CCCCHHHHHHHHHCCSCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred hhhhhhccCHHHHHHHHHHHHHhCCCcHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 44567789999999999999999988754 899999999999999999999999999999999999999999
Q ss_pred -HHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613 158 -YKDIGRL--EEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 209 (559)
Q Consensus 158 -~~~lg~~--eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i 209 (559)
|...|++ ++|+..|++++.++|++..++..++.+....++...+...+.+++
T Consensus 88 l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 142 (177)
T 2e2e_A 88 LYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVM 142 (177)
T ss_dssp HHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 8899999 999999999999999999999999999888877665544444444
No 97
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.24 E-value=1.2e-10 Score=116.98 Aligned_cols=112 Identities=17% Similarity=0.155 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008613 70 AAKMLKKQGNELYSE-GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV 148 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~-g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ 148 (559)
.+..+...|.+|... |+|++|+.+|.+|+++.|.... ......++.++|.+|.++|+|++|+..|++++++.|++.
T Consensus 116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 192 (292)
T 1qqe_A 116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS---VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR 192 (292)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC---hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCC
Confidence 467889999999997 9999999999999999886543 223356899999999999999999999999999998864
Q ss_pred H-------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008613 149 K-------ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI 184 (559)
Q Consensus 149 k-------al~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a 184 (559)
. +|+++|.+|..+|++++|+.+|++++.++|++...
T Consensus 193 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 193 LSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp TTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 3 68999999999999999999999999999987654
No 98
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.24 E-value=6.7e-11 Score=126.52 Aligned_cols=146 Identities=8% Similarity=-0.013 Sum_probs=126.8
Q ss_pred HHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHH
Q 008613 54 ATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDEC 133 (559)
Q Consensus 54 ~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eA 133 (559)
..+...++..+...+. ...+..+|.+++..|+|++|+..|.+++.+.|.++. +|+++|.+|...|+|++|
T Consensus 260 ~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~~~~A 329 (537)
T 3fp2_A 260 LDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPP---------TYYHRGQMYFILQDYKNA 329 (537)
T ss_dssp HHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHH---------HHHHHHHHHHhcCCHHHH
Confidence 3444555555555555 778889999999999999999999999999888754 899999999999999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613 134 IKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 209 (559)
Q Consensus 134 i~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i 209 (559)
+..|+++++++|+++.+++.+|.+|...|++++|+..|++++.++|++..++..++.+....++...+...+++++
T Consensus 330 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 405 (537)
T 3fp2_A 330 KEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAK 405 (537)
T ss_dssp HHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999888877766555555554
No 99
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.24 E-value=3.1e-11 Score=116.80 Aligned_cols=141 Identities=16% Similarity=0.072 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----
Q 008613 68 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY---- 143 (559)
Q Consensus 68 ~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l---- 143 (559)
+..+..+..+|.+++..|+|++|+.+|.+++.+...... ........+++++|.||...|+|++|+..|.+++++
T Consensus 40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 118 (283)
T 3edt_B 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLG-KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 118 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 556889999999999999999999999999998522100 001235679999999999999999999999999998
Q ss_pred ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613 144 ----DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV--------SPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 209 (559)
Q Consensus 144 ----dP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l--------~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i 209 (559)
+|....+++.+|.+|..+|++++|+..|++++.+ +|....++..++.+....++...+...++.++
T Consensus 119 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 119 LGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5778899999999999999999999999999999 66667788889999888887776655555555
No 100
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.23 E-value=1e-10 Score=128.37 Aligned_cols=120 Identities=7% Similarity=-0.045 Sum_probs=107.0
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHH
Q 008613 55 TMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 134 (559)
Q Consensus 55 aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi 134 (559)
.+...++..++..+..+..+..+|.+|+..|+|++|+.+|.+++++.|.++. +|+++|.||.++|+|++|+
T Consensus 41 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~la~~~~~~g~~~~A~ 111 (568)
T 2vsy_A 41 AGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPG---------IALWLGHALEDAGQAEAAA 111 (568)
T ss_dssp HHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH---------HHHHHHHHHHHcCCHHHHH
Confidence 3444444444444455889999999999999999999999999999988754 8999999999999999999
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHH
Q 008613 135 KVGSEVLAYDAKNVKALYRRGQAYKDI---GRLEEAVSDLSNAHEVSPDDGT 183 (559)
Q Consensus 135 ~~~~~AL~ldP~~~kal~~rG~A~~~l---g~~eeAi~dlekAl~l~P~~~~ 183 (559)
..|+++++++|++..+++.+|.+|..+ |++++|+..|+++++++|++..
T Consensus 112 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 163 (568)
T 2vsy_A 112 AAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVE 163 (568)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSC
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccC
Confidence 999999999999999999999999999 9999999999999999998643
No 101
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.23 E-value=2.2e-10 Score=124.62 Aligned_cols=172 Identities=9% Similarity=-0.023 Sum_probs=138.4
Q ss_pred HhhCCChHHHHHHHHHHHccCcHHH----------------HHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHH
Q 008613 29 QLTHTPPEEVAEIGEKLANASPEEI----------------ATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQ 92 (559)
Q Consensus 29 ~l~~~~pee~~~~~~~~~~~~pee~----------------~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~ 92 (559)
..+..+.++......++....|++. ..+...++......+..+..+..+|..|++.|++++|+.
T Consensus 315 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 394 (597)
T 2xpi_A 315 LFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARR 394 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHH
Confidence 3456677777777766665554321 122222222223334457788899999999999999999
Q ss_pred HHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008613 93 KYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLS 172 (559)
Q Consensus 93 ~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dle 172 (559)
.|.+++++.|.+.. +|++++.+|.+.|++++|+..|+++++++|++..+|+.+|.+|...|++++|+..|+
T Consensus 395 ~~~~~~~~~~~~~~---------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 465 (597)
T 2xpi_A 395 YFSKSSTMDPQFGP---------AWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQ 465 (597)
T ss_dssp HHHHHHHHCTTCHH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhCCCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999887754 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613 173 NAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 209 (559)
Q Consensus 173 kAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i 209 (559)
+++.++|+++.++..+..+....++.+++...+++.+
T Consensus 466 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 502 (597)
T 2xpi_A 466 SSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNAL 502 (597)
T ss_dssp HHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999999999999999888877666554444443
No 102
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.22 E-value=9e-11 Score=98.42 Aligned_cols=94 Identities=10% Similarity=0.056 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHH
Q 008613 114 LACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD------GTIADV 187 (559)
Q Consensus 114 ~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~------~~a~~~ 187 (559)
...|+++|.+|+..|+|++|+..|+++++++|+++.+++++|.+|..+|+|++|+.+|++++.++|++ ..++..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 45889999999999999999999999999999999999999999999999999999999999999998 888888
Q ss_pred HHHHHHHHHhhcCCCCCccc
Q 008613 188 LRDAKEILMKEDGHHGPRGL 207 (559)
Q Consensus 188 L~~a~~~l~~~~~~~~~~~~ 207 (559)
++.+...++....+...+++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHhHhhhHhHHHH
Confidence 99998888866665554443
No 103
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.22 E-value=1.4e-10 Score=126.18 Aligned_cols=132 Identities=11% Similarity=-0.035 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----
Q 008613 69 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY----- 143 (559)
Q Consensus 69 ~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l----- 143 (559)
.....+..+|..|.+.|++++|+..|.+++++.|.++. +|++++.+|.+.|++++|+..|++++++
T Consensus 439 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 509 (597)
T 2xpi_A 439 GTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPL---------LLNELGVVAFNKSDMQTAINHFQNALLLVKKTQ 509 (597)
T ss_dssp TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH---------HHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccc
Confidence 34556677777777777777777777777777766543 6777777777777777777777777777
Q ss_pred -CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613 144 -DAKN-VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 209 (559)
Q Consensus 144 -dP~~-~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i 209 (559)
+|++ ..+|+.+|.+|...|++++|+..|+++++++|++..++..++.+....++.+++...+++.+
T Consensus 510 ~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 577 (597)
T 2xpi_A 510 SNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESL 577 (597)
T ss_dssp CCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 5554 67777777777777777777777777777777777777777777777666555444444443
No 104
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.21 E-value=6.1e-12 Score=112.50 Aligned_cols=109 Identities=10% Similarity=0.025 Sum_probs=94.5
Q ss_pred HHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008613 92 QKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDL 171 (559)
Q Consensus 92 ~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dl 171 (559)
..|.+++.+.|.+. ..++++|.+++..|+|++|+..|++++.++|+++.+|+.+|.+|..+|+|++|+.+|
T Consensus 5 ~~l~~al~~~p~~~---------~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 75 (142)
T 2xcb_A 5 GTLAMLRGLSEDTL---------EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSY 75 (142)
T ss_dssp ----CCTTCCHHHH---------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhHHHHHcCCHHHH---------HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 35666666655543 489999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613 172 SNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 209 (559)
Q Consensus 172 ekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i 209 (559)
++++.++|+++.++..++.+...+++...+...+++++
T Consensus 76 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 113 (142)
T 2xcb_A 76 SYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSAR 113 (142)
T ss_dssp HHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999988777666666555
No 105
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.21 E-value=2.7e-10 Score=102.05 Aligned_cols=100 Identities=9% Similarity=0.026 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008613 69 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV 148 (559)
Q Consensus 69 ~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ 148 (559)
..+..+...|.+++..|+|++|+..|.+++.+.|.++. +|+++|.||..+|+|++|+..|.++++++|++.
T Consensus 45 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~ 115 (166)
T 1a17_A 45 SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIK---------GYYRRAASNMALGKFRAALRDYETVVKVKPHDK 115 (166)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH---------HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH
Confidence 33788999999999999999999999999999888754 899999999999999999999999999999999
Q ss_pred HHHHHH--HHHHHHcCCHHHHHHHHHHHHHh
Q 008613 149 KALYRR--GQAYKDIGRLEEAVSDLSNAHEV 177 (559)
Q Consensus 149 kal~~r--G~A~~~lg~~eeAi~dlekAl~l 177 (559)
.++..+ +..+...|++++|+..++++..+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 116 DAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 888554 44488899999999999887654
No 106
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.20 E-value=7.6e-11 Score=107.48 Aligned_cols=85 Identities=21% Similarity=0.167 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008613 113 LLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAK 192 (559)
Q Consensus 113 ~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~ 192 (559)
....|+++|.+|+..|+|++|+..|+++++++|+++.+|+++|.+|..+|+|++|+.+|++++.++|++..++..++.+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 46689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHh
Q 008613 193 EILMK 197 (559)
Q Consensus 193 ~~l~~ 197 (559)
..+++
T Consensus 90 ~~~g~ 94 (164)
T 3sz7_A 90 FDMAD 94 (164)
T ss_dssp HHTTC
T ss_pred HHccC
Confidence 77643
No 107
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.20 E-value=1.4e-10 Score=122.50 Aligned_cols=131 Identities=17% Similarity=0.026 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----
Q 008613 70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD----- 144 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ld----- 144 (559)
.+..+..+|.+++..|+|++|+++|.+|+++.+.........-...+|.|+|.+|..+|+|++|+.+|++++++.
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 366788899999999999999999999999865433222223346689999999999999999999999999873
Q ss_pred ---CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcC
Q 008613 145 ---AKNVKALYRRGQAYKDIG--RLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG 200 (559)
Q Consensus 145 ---P~~~kal~~rG~A~~~lg--~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~ 200 (559)
+..+.++..+|.++..++ +|++|+.+|+++++++|+++.++..++.+...+.....
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~ 190 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPP 190 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchH
Confidence 456889999999988765 69999999999999999999999999988877766544
No 108
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.19 E-value=1.9e-10 Score=111.13 Aligned_cols=109 Identities=12% Similarity=-0.012 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----
Q 008613 68 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY---- 143 (559)
Q Consensus 68 ~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l---- 143 (559)
+..+..+..+|.+++..|+|++|+.+|.+++.+...... ........+++++|.+|..+|+|++|+..|++++++
T Consensus 82 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 160 (283)
T 3edt_B 82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG-KFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATR 160 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 667889999999999999999999999999998522100 001235669999999999999999999999999999
Q ss_pred ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613 144 ----DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV 177 (559)
Q Consensus 144 ----dP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l 177 (559)
+|....+++.+|.+|...|++++|+..|++++.+
T Consensus 161 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 161 LGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7888899999999999999999999999999987
No 109
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.19 E-value=1.2e-10 Score=117.88 Aligned_cols=136 Identities=10% Similarity=-0.028 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008613 68 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN 147 (559)
Q Consensus 68 ~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~ 147 (559)
...+..+.+.|.+|...|+|++|+.+|.+++.+.+.... ......+|.++|.+|.. |+|++|+.+|++++++.|..
T Consensus 73 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~---~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~ 148 (307)
T 2ifu_A 73 FHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGT---PDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE 148 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC
Confidence 345788899999999999999999999999998765433 22345688999999998 99999999999999987754
Q ss_pred ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHHhhcCCCCCccc
Q 008613 148 ------VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG------TIADVLRDAKEILMKEDGHHGPRGL 207 (559)
Q Consensus 148 ------~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~------~a~~~L~~a~~~l~~~~~~~~~~~~ 207 (559)
..+++++|.+|..+|+|++|+..|++++.+.|++. .++..++.+...+++...+...+++
T Consensus 149 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 149 ERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 67899999999999999999999999999876442 2444445555554544444333333
No 110
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.18 E-value=3.9e-11 Score=105.90 Aligned_cols=95 Identities=12% Similarity=0.019 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HH
Q 008613 113 LLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT-------IA 185 (559)
Q Consensus 113 ~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~-------a~ 185 (559)
.+.++.++|.+|++.|+|++|+.+|+++|+++|+++.+|+++|.+|..+|+|++|+.+|+++++++|++.. ++
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999987643 45
Q ss_pred HHHHHHHHHHHhhcCCCCCccc
Q 008613 186 DVLRDAKEILMKEDGHHGPRGL 207 (559)
Q Consensus 186 ~~L~~a~~~l~~~~~~~~~~~~ 207 (559)
..++.+...+++...+...+++
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~k 108 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHR 108 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 5555555555544444333333
No 111
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.18 E-value=7.1e-11 Score=126.32 Aligned_cols=119 Identities=9% Similarity=0.010 Sum_probs=107.6
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHH
Q 008613 55 TMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 134 (559)
Q Consensus 55 aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi 134 (559)
.+...+...+...+..+..+...|.+++..|+|++|+..|.+++.+.|.++. +|+++|.+|...|+|++|+
T Consensus 294 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~la~~~~~~g~~~~A~ 364 (537)
T 3fp2_A 294 EFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVY---------PYIQLACLLYKQGKFTESE 364 (537)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSH---------HHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHcCCHHHHH
Confidence 3445555555555666888999999999999999999999999999998865 8999999999999999999
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008613 135 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG 182 (559)
Q Consensus 135 ~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~ 182 (559)
..|+++++++|+++.+++.+|.+|...|++++|+..|++++.++|++.
T Consensus 365 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 412 (537)
T 3fp2_A 365 AFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE 412 (537)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence 999999999999999999999999999999999999999999988654
No 112
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.17 E-value=9e-11 Score=101.83 Aligned_cols=96 Identities=13% Similarity=0.076 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008613 114 LACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE 193 (559)
Q Consensus 114 ~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~ 193 (559)
+..|+++|.++++.|+|++|+..|+++++++|+++.+|+++|.+|..+|+|++|+.+|++++.++|++..++..++.+..
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCccchh
Q 008613 194 ILMKEDGHHGPRGLLI 209 (559)
Q Consensus 194 ~l~~~~~~~~~~~~~i 209 (559)
.+++..++...+++++
T Consensus 84 ~~~~~~~A~~~~~~al 99 (126)
T 3upv_A 84 AVKEYASALETLDAAR 99 (126)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHH
Confidence 9988777666666555
No 113
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.17 E-value=4.6e-11 Score=120.16 Aligned_cols=132 Identities=11% Similarity=0.017 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008613 69 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV 148 (559)
Q Consensus 69 ~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ 148 (559)
.....+..+|..++..|++++|+..|++++.++|.++. +++++|.+|...|++++|+..+++++.++|++.
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~---------a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~ 185 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGE---------IGLLLAETLIALNRSEDAEAVLXTIPLQDQDTR 185 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHH---------HHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchh---------HHHHHHHHHHHCCCHHHHHHHHHhCchhhcchH
Confidence 34778899999999999999999999999999999865 999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613 149 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 209 (559)
Q Consensus 149 kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i 209 (559)
..++..+..+...+++++|+..|++++.++|++..++..++.+....++.+++...+..++
T Consensus 186 ~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l 246 (287)
T 3qou_A 186 YQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHL 246 (287)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 8888889999999999999999999999999999999999999999888777666666555
No 114
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.17 E-value=1e-10 Score=123.85 Aligned_cols=117 Identities=12% Similarity=0.105 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCC
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK---TKQYDECIKVGSEVLAYDAKN 147 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylk---lg~y~eAi~~~~~AL~ldP~~ 147 (559)
...+...|.+++..|+|++|+..|.+++.+.|.++.. .....+|+++|.+|.. .|++++|+..|+++++++|++
T Consensus 372 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 448 (514)
T 2gw1_A 372 PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGI---YVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRS 448 (514)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSC---SSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchH---HHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCccc
Confidence 4445555555555555555555555555555444320 0011245555555555 555555555555555555555
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008613 148 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD 190 (559)
Q Consensus 148 ~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~ 190 (559)
+.+++.+|.+|...|++++|+..|++++.++|+++.++..+..
T Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 491 (514)
T 2gw1_A 449 EQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITF 491 (514)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 5555555555555555555555555555555555555544433
No 115
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.17 E-value=5.3e-11 Score=110.45 Aligned_cols=101 Identities=16% Similarity=0.121 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 008613 114 LACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK-------NVK-----ALYRRGQAYKDIGRLEEAVSDLSNAHEV---- 177 (559)
Q Consensus 114 ~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~-------~~k-----al~~rG~A~~~lg~~eeAi~dlekAl~l---- 177 (559)
+..+.++|.++++.|+|++|+..|+++|+++|+ +.. +|+++|.++..+|+|++|+.+|+++|++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 457889999999999999999999999999999 544 9999999999999999999999999999
Q ss_pred ---CCCCHHHH----HHHHHHHHHHHhhcCCCCCccchhhhhchh
Q 008613 178 ---SPDDGTIA----DVLRDAKEILMKEDGHHGPRGLLIEEITEE 215 (559)
Q Consensus 178 ---~P~~~~a~----~~L~~a~~~l~~~~~~~~~~~~~i~e~~e~ 215 (559)
+|++..+| .+++.+...+++.+++...+++++ ++.++
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl-el~p~ 134 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV-EMIEE 134 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH-hcCCC
Confidence 99999999 999999999999999888888887 44443
No 116
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.16 E-value=5.6e-10 Score=118.23 Aligned_cols=149 Identities=15% Similarity=0.072 Sum_probs=121.6
Q ss_pred hhCCChHHHHHHHHHHHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchh
Q 008613 30 LTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEG 109 (559)
Q Consensus 30 l~~~~pee~~~~~~~~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~ 109 (559)
....+.++......++....|.. ...+...|.+++..|+|++|+..|.+++.+.|.++.
T Consensus 315 ~~~~~~~~A~~~~~~~~~~~~~~------------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--- 373 (514)
T 2gw1_A 315 FILQNYDQAGKDFDKAKELDPEN------------------IFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPE--- 373 (514)
T ss_dssp HHTTCTTHHHHHHHHHHHTCSSC------------------SHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSH---
T ss_pred HHhCCHHHHHHHHHHHHHhChhh------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHH---
Confidence 45667888888888888888877 668888999999999999999999999999988765
Q ss_pred hhhHHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHH---cCCHHHHHHHHHHHHH
Q 008613 110 RTLLLACSLNSMSCYLK-------TKQYDECIKVGSEVLAYDAK---NVKALYRRGQAYKD---IGRLEEAVSDLSNAHE 176 (559)
Q Consensus 110 ~~l~~~~~~nlA~~ylk-------lg~y~eAi~~~~~AL~ldP~---~~kal~~rG~A~~~---lg~~eeAi~dlekAl~ 176 (559)
+++++|.+|.. ...|++++... ..++. ...+++.+|.+|.. .|++++|+..|++++.
T Consensus 374 ------~~~~la~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~ 443 (514)
T 2gw1_A 374 ------VPNFFAEILTDKNDFDKALKQYDLAIELE----NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK 443 (514)
T ss_dssp ------HHHHHHHHHHHTTCHHHHHHHHHHHHHHH----HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHCCCHHHHHHHHHHHHHhh----hccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 66777776653 45566666543 33444 36699999999999 9999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613 177 VSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 209 (559)
Q Consensus 177 l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i 209 (559)
++|++..++..++.+....++...+...+++++
T Consensus 444 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 444 LDPRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999999999888888776655555554
No 117
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.15 E-value=1.4e-10 Score=102.09 Aligned_cols=130 Identities=15% Similarity=0.140 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-
Q 008613 69 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN- 147 (559)
Q Consensus 69 ~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~- 147 (559)
..+..+..+|..++..|+|++|+.+|.+++.+.+.... ......+++++|.+|...|+|++|+..+.+++++.+..
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 83 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD---KAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 83 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC---chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 34778889999999999999999999999998765433 34456689999999999999999999999999886553
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHhhcCC
Q 008613 148 -----VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD------GTIADVLRDAKEILMKEDGH 201 (559)
Q Consensus 148 -----~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~------~~a~~~L~~a~~~l~~~~~~ 201 (559)
..+++++|.++...|++++|+..|++++.+.+.. ..++..++.+....++...+
T Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 148 (164)
T 3ro3_A 84 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 148 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHH
Confidence 6789999999999999999999999999874321 34556666666666555443
No 118
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.14 E-value=7.6e-10 Score=111.75 Aligned_cols=147 Identities=5% Similarity=-0.158 Sum_probs=118.6
Q ss_pred HHHHHHHHHhH-HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHH
Q 008613 55 TMRARIDAQMN-YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDEC 133 (559)
Q Consensus 55 aa~~~l~~~~~-~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eA 133 (559)
.+.+.+++.+. ..+.....|...|..+...|++++|+..|++++++.|.++. .+|.+++.++.+.|++++|
T Consensus 82 ~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~--------~~~~~~~~~~~~~~~~~~A 153 (308)
T 2ond_A 82 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT--------LVYIQYMKFARRAEGIKSG 153 (308)
T ss_dssp HHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH--------HHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCcc--------HHHHHHHHHHHHhcCHHHH
Confidence 34455555555 35556788999999999999999999999999998877642 2789999999999999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613 134 IKVGSEVLAYDAKNVKALYRRGQAYKD-IGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 209 (559)
Q Consensus 134 i~~~~~AL~ldP~~~kal~~rG~A~~~-lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i 209 (559)
+..|+++++++|.+..+|...+..... .|++++|+..|+++++++|+++.++..+..+...+++..++..-+++++
T Consensus 154 ~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al 230 (308)
T 2ond_A 154 RMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVL 230 (308)
T ss_dssp HHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999999998888766655433 7999999999999999999999999888888777666555444444444
No 119
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.14 E-value=2.7e-10 Score=117.51 Aligned_cols=98 Identities=13% Similarity=-0.056 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008613 70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK 149 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~k 149 (559)
.+..+.++|.+|++.|+|++|+.+|.++|+++|.++. +|+++|.||..+|+|++|+.+|+++++++|++..
T Consensus 195 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~---------a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~ 265 (336)
T 1p5q_A 195 RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEK---------GLSRRGEAHLAVNDFELARADFQKVLQLYPNNKA 265 (336)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH---------HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
Confidence 3788999999999999999999999999999988754 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHH-HHHHHHHHH
Q 008613 150 ALYRRGQAYKDIGRLEEA-VSDLSNAHE 176 (559)
Q Consensus 150 al~~rG~A~~~lg~~eeA-i~dlekAl~ 176 (559)
+++.++.++..++++++| ...|++.+.
T Consensus 266 a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 266 AKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 556776664
No 120
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.14 E-value=1.7e-11 Score=113.54 Aligned_cols=129 Identities=16% Similarity=0.118 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 150 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka 150 (559)
.+.+..+|..++..|+|++|+..|++++.++|.++. +++++|.+|...|++++|+..|+++++++| ++..
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~---------a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~ 75 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGD---------VKLAKADCLLETKQFELAQELLATIPLEYQ-DNSY 75 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHH---------HHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH---------HHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHH
Confidence 445778999999999999999999999999999865 999999999999999999999999999999 8877
Q ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613 151 LYRRGQAYK-DIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 209 (559)
Q Consensus 151 l~~rG~A~~-~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i 209 (559)
+..++.+.. ..++..+|+..|++++.++|++..++..++.+....++.+++...+++++
T Consensus 76 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 135 (176)
T 2r5s_A 76 KSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNIL 135 (176)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 766665533 33344568999999999999999999999999998887776555555544
No 121
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.13 E-value=3.4e-10 Score=117.20 Aligned_cols=141 Identities=16% Similarity=0.129 Sum_probs=119.8
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008613 67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 146 (559)
Q Consensus 67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~ 146 (559)
....+..+...|.+++..|+|++|+.+|.+|+.+.+.... .......+++++|.||..+|+|++|+..|.+++++.+.
T Consensus 139 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 216 (383)
T 3ulq_A 139 RIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA--YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEA 216 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST--THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc--chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 4457889999999999999999999999999999887754 13345679999999999999999999999999988654
Q ss_pred C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hC-CCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613 147 N------VKALYRRGQAYKDIGRLEEAVSDLSNAHE-----VS-PDDGTIADVLRDAKEILMKEDGHHGPRGLLI 209 (559)
Q Consensus 147 ~------~kal~~rG~A~~~lg~~eeAi~dlekAl~-----l~-P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i 209 (559)
. ..+++++|.+|..+|++++|+..|++++. .+ |....++..++.+...+++...+...+++++
T Consensus 217 ~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 217 EKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3 36999999999999999999999999999 45 7778888999999888877766555555544
No 122
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.13 E-value=1.1e-09 Score=107.76 Aligned_cols=109 Identities=13% Similarity=0.037 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----
Q 008613 68 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY---- 143 (559)
Q Consensus 68 ~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l---- 143 (559)
...+..+...|.+++..|+|++|+.+|.+++.+...... ........+++++|.+|...|+|++|+..+++++++
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG-KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 666888999999999999999999999999998521100 001235668999999999999999999999999998
Q ss_pred ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613 144 ----DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV 177 (559)
Q Consensus 144 ----dP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l 177 (559)
+|....+++.+|.+|..+|++++|+..|++++.+
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7788899999999999999999999999999985
No 123
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.12 E-value=2.1e-10 Score=100.36 Aligned_cols=94 Identities=13% Similarity=0.059 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008613 116 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 195 (559)
Q Consensus 116 ~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l 195 (559)
.++++|.++++.|+|++|+..|+++++++|+++.+|+.+|.++..+|++++|+..|+++++++|++..++..++.+...+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCccchh
Q 008613 196 MKEDGHHGPRGLLI 209 (559)
Q Consensus 196 ~~~~~~~~~~~~~i 209 (559)
++..++...+++++
T Consensus 99 g~~~~A~~~~~~al 112 (121)
T 1hxi_A 99 HNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 88776655555554
No 124
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.11 E-value=6.2e-10 Score=89.91 Aligned_cols=77 Identities=31% Similarity=0.459 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008613 116 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAK 192 (559)
Q Consensus 116 ~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~ 192 (559)
+++++|.+|...++|++|+..|.++++++|+++.+++.+|.+|...|++++|+..|++++.++|++..++..++.+.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 44445555555555555555555555555555555555555555555555555555555555555554444444443
No 125
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.10 E-value=6.5e-10 Score=111.33 Aligned_cols=136 Identities=13% Similarity=0.002 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY------- 143 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l------- 143 (559)
...+...|..++..++|++|+.+|.+++.+.+...+ ......++.++|.+|..+|+|++|+.+|.+++++
T Consensus 115 ~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~---~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 191 (293)
T 3u3w_A 115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID---VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN 191 (293)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSC---TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccccc---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc
Confidence 445567899999999999999999999997665443 1234568999999999999999999999999953
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHhh-cCCCCCccchh
Q 008613 144 DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD------GTIADVLRDAKEILMKE-DGHHGPRGLLI 209 (559)
Q Consensus 144 dP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~------~~a~~~L~~a~~~l~~~-~~~~~~~~~~i 209 (559)
.+....+|+++|.+|..+|+|++|+..+++++.+.+.. ..++..++.+...+++. +.+...+++++
T Consensus 192 ~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 192 EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 23345799999999999999999999999999987543 67888899998888743 55444444444
No 126
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.09 E-value=5.7e-09 Score=107.90 Aligned_cols=110 Identities=14% Similarity=0.118 Sum_probs=99.8
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----
Q 008613 67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLA---- 142 (559)
Q Consensus 67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~---- 142 (559)
....+..+..+|.++...|+|++|+.+|.+++.+.+...+ ......+++++|.||..+|+|++|+.++.++++
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 256 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ---PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEE 256 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 5556788999999999999999999999999999876643 455677999999999999999999999999999
Q ss_pred -cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008613 143 -YD-AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP 179 (559)
Q Consensus 143 -ld-P~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P 179 (559)
.+ |..+.+++++|.+|..+|++++|+..|++++.+.+
T Consensus 257 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 295 (383)
T 3ulq_A 257 SNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ 295 (383)
T ss_dssp TTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 46 88899999999999999999999999999999854
No 127
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.09 E-value=1.3e-09 Score=88.08 Aligned_cols=82 Identities=24% Similarity=0.199 Sum_probs=57.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008613 79 NELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAY 158 (559)
Q Consensus 79 n~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~ 158 (559)
..++..+..-.....|.+|+....... ........+++++|.||...|+|++|+..|+++++++|+++.+++.+|.++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKAL--ELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 344444443334444666665533211 111224568889999999999999999999999999999999999999998
Q ss_pred HHcC
Q 008613 159 KDIG 162 (559)
Q Consensus 159 ~~lg 162 (559)
..+|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 7764
No 128
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.09 E-value=1.4e-09 Score=92.51 Aligned_cols=86 Identities=12% Similarity=-0.046 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008613 70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK 149 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~k 149 (559)
.+..+...|.+++..|+|++|+..|.+++.+.|.++. +++++|.+|...|++++|+..+.++++++|++..
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 115 (131)
T 2vyi_A 45 NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSK---------AYGRMGLALSSLNKHVEAVAYYKKALELDPDNET 115 (131)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHH---------HHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchH
Confidence 3778899999999999999999999999999888754 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCH
Q 008613 150 ALYRRGQAYKDIGRL 164 (559)
Q Consensus 150 al~~rG~A~~~lg~~ 164 (559)
+++.++.++..+|++
T Consensus 116 ~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 116 YKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999999875
No 129
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.09 E-value=3.7e-10 Score=111.17 Aligned_cols=142 Identities=15% Similarity=0.070 Sum_probs=117.7
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--
Q 008613 67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD-- 144 (559)
Q Consensus 67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ld-- 144 (559)
....+..+..+|.+++..|+|++|+.+|.+++.+...... ........+++++|.+|...|+|++|+..|.+++++.
T Consensus 65 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 143 (311)
T 3nf1_A 65 HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG-KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 143 (311)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 4556888999999999999999999999999998522100 0012356799999999999999999999999999884
Q ss_pred ------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613 145 ------AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV--------SPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 209 (559)
Q Consensus 145 ------P~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l--------~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i 209 (559)
|....+++.+|.+|...|++++|+..|++++.+ +|....++..++.+....++..++...+++++
T Consensus 144 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 222 (311)
T 3nf1_A 144 VLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 667889999999999999999999999999998 66667788888888888887776655555555
No 130
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.08 E-value=7.1e-10 Score=102.83 Aligned_cols=131 Identities=13% Similarity=-0.018 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CC-
Q 008613 70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY---DA- 145 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l---dP- 145 (559)
.+..+...|.+++..|+|++|+.+|.+++.+...... ......+++++|.+|...|+|++|+..+.+++++ .+
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 101 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD---HTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPE 101 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCc
Confidence 3677888899999999999999999999987665433 3445668889999999999999999999998887 33
Q ss_pred ---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCH----HHHHHHHHHHHHHHhhcCCCC
Q 008613 146 ---KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP--DDG----TIADVLRDAKEILMKEDGHHG 203 (559)
Q Consensus 146 ---~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P--~~~----~a~~~L~~a~~~l~~~~~~~~ 203 (559)
....+++++|.+|..+|++++|+..|++++.+.+ .+. .++..++.+....++...+..
T Consensus 102 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 168 (203)
T 3gw4_A 102 DPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQ 168 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 2356788899999999999999999999887643 222 234566666666655544333
No 131
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.07 E-value=8.8e-10 Score=112.77 Aligned_cols=140 Identities=14% Similarity=0.104 Sum_probs=117.2
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008613 67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 146 (559)
Q Consensus 67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~ 146 (559)
....+..+...|.+++..|+|++|+.+|.+++.+.+.... ......+++++|.+|...|+|++|+..|.+++++.+.
T Consensus 183 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 259 (406)
T 3sf4_A 183 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD---KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 259 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCC---cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 3445678899999999999999999999999999877654 3455679999999999999999999999999998877
Q ss_pred C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613 147 N------VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD------GTIADVLRDAKEILMKEDGHHGPRGLLI 209 (559)
Q Consensus 147 ~------~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~------~~a~~~L~~a~~~l~~~~~~~~~~~~~i 209 (559)
. ..+++.+|.+|...|++++|+..|++++.+.+.. ..++..++.+...+++...+...+++++
T Consensus 260 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 260 LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6 7899999999999999999999999999986543 5577778888887777666555555444
No 132
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.06 E-value=1.6e-09 Score=92.96 Aligned_cols=107 Identities=11% Similarity=0.030 Sum_probs=91.8
Q ss_pred hhCCChHHHHHHHHHHHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchh
Q 008613 30 LTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEG 109 (559)
Q Consensus 30 l~~~~pee~~~~~~~~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~ 109 (559)
+...+.++......++....|.. ...+..+|.+++..|+|++|+..|.+++.+.|.++.
T Consensus 27 ~~~~~~~~A~~~~~~al~~~~~~------------------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~--- 85 (133)
T 2lni_A 27 FQKGDYPQAMKHYTEAIKRNPKD------------------AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIK--- 85 (133)
T ss_dssp HHTTCSHHHHHHHHHHHTTCTTC------------------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHH---
T ss_pred HHcCCHHHHHHHHHHHHHcCCCc------------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchH---
Confidence 34455555555555555555555 788999999999999999999999999999888754
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 008613 110 RTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGR 163 (559)
Q Consensus 110 ~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~ 163 (559)
+++++|.||..+|+|++|+..|.++++++|++..+++.++.++...|+
T Consensus 86 ------~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 86 ------GYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp ------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred ------HHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 899999999999999999999999999999999999999999988764
No 133
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.06 E-value=2.5e-09 Score=107.04 Aligned_cols=129 Identities=13% Similarity=0.013 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCC
Q 008613 70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVL---AYDAK 146 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL---~ldP~ 146 (559)
....+...|..+...|+|++|+.+|.+++.+.+.... ......+|+++|.+|..+|+|++|+.+|.+++ +..|+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~ 190 (293)
T 2qfc_A 114 FLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID---VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD 190 (293)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC---TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCc
Confidence 3455667899999999999999999999988665433 12245689999999999999999999999999 44665
Q ss_pred CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHHhhcCC
Q 008613 147 NV----KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD------DGTIADVLRDAKEILMKEDGH 201 (559)
Q Consensus 147 ~~----kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~------~~~a~~~L~~a~~~l~~~~~~ 201 (559)
+. .+++++|.+|..+|+|++|+..|++++.+.++ ...++..++.+...+++.+.+
T Consensus 191 ~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A 255 (293)
T 2qfc_A 191 NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAE 255 (293)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHH
T ss_pred cccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 43 79999999999999999999999999998643 156778888888887765554
No 134
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.06 E-value=2.6e-10 Score=94.51 Aligned_cols=67 Identities=19% Similarity=0.412 Sum_probs=31.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008613 119 NSMSCYLKTKQYDECIKVGSEVLAYDAKNVK-ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIA 185 (559)
Q Consensus 119 nlA~~ylklg~y~eAi~~~~~AL~ldP~~~k-al~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~ 185 (559)
++|.+|+..|+|++|+..|+++++++|+++. +++.+|.+|..+|++++|+.+|++++.++|++..++
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 3444444444444444444444444444444 444444444444444444444444444444444433
No 135
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.05 E-value=2.2e-09 Score=108.41 Aligned_cols=139 Identities=6% Similarity=-0.054 Sum_probs=111.5
Q ss_pred HHHHHHHHHHhHHhHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHH-cCCHH
Q 008613 54 ATMRARIDAQMNYEFNAAK-MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK-TKQYD 131 (559)
Q Consensus 54 ~aa~~~l~~~~~~~~~~a~-~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylk-lg~y~ 131 (559)
..+...++..+...+..+. .|...|..+.+.|++++|+..|.+++++.|.... +|...+.+... .|+++
T Consensus 116 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~---------~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 116 EKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH---------VYVTAALMEYYCSKDKS 186 (308)
T ss_dssp HHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTH---------HHHHHHHHHHHTSCCHH
T ss_pred HHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHH---------HHHHHHHHHHHHcCCHH
Confidence 3444444444443433344 8999999999999999999999999999887643 56666655443 79999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC-CHHHHHHHHHHHHHHHhhcCC
Q 008613 132 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV---SPD-DGTIADVLRDAKEILMKEDGH 201 (559)
Q Consensus 132 eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l---~P~-~~~a~~~L~~a~~~l~~~~~~ 201 (559)
+|+..|+++++++|+++.+|..++..+..+|++++|+..|++++.. .|+ ...++..+.......++...+
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a 260 (308)
T 2ond_A 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI 260 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999999999999999999999999999999996 554 678888888777776654443
No 136
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.05 E-value=6.7e-09 Score=103.87 Aligned_cols=107 Identities=12% Similarity=0.190 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--
Q 008613 70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN-- 147 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~-- 147 (559)
.+..+...|.+|+..|+|++|+.+|.+++.+....+. .......+|+|+|.+|.++|+|++|+.++.+++++.+..
T Consensus 154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~ 231 (293)
T 3u3w_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD--NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS 231 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCc
Confidence 3567999999999999999999999999987654422 245567799999999999999999999999999987654
Q ss_pred ----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC
Q 008613 148 ----VKALYRRGQAYKDIG-RLEEAVSDLSNAHEVS 178 (559)
Q Consensus 148 ----~kal~~rG~A~~~lg-~~eeAi~dlekAl~l~ 178 (559)
+.+|+++|.+|..+| .+++|+..|++|+.+.
T Consensus 232 ~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 232 MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp CTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 889999999999999 5799999999999864
No 137
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.04 E-value=2.1e-09 Score=100.91 Aligned_cols=137 Identities=4% Similarity=-0.134 Sum_probs=97.6
Q ss_pred HhhCCChHHHHHHHHHHHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCch
Q 008613 29 QLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSE 108 (559)
Q Consensus 29 ~l~~~~pee~~~~~~~~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e 108 (559)
.+...+.++......++....|.........+.. ....-.+..+..+|.+++..|+|++|+.+|.+++.+.|.++.
T Consensus 48 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~--~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-- 123 (198)
T 2fbn_A 48 FFKKNEINEAIVKYKEALDFFIHTEEWDDQILLD--KKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVK-- 123 (198)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHH--HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH--
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccchhhHHH--HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHH--
Confidence 3455666666666666665544331000000000 001112578899999999999999999999999999888754
Q ss_pred hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHH
Q 008613 109 GRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAV-SDLSNAHE 176 (559)
Q Consensus 109 ~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi-~dlekAl~ 176 (559)
+++++|.||..+|+|++|+.+|.++++++|++..++..++.++..+++++++. ..|.+.+.
T Consensus 124 -------~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 124 -------ALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp -------HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred -------HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 89999999999999999999999999999999999999999999999988877 44444443
No 138
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.04 E-value=7e-10 Score=114.71 Aligned_cols=125 Identities=16% Similarity=0.116 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----
Q 008613 68 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY---- 143 (559)
Q Consensus 68 ~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l---- 143 (559)
...+..+..+|..++..|+|++|+.+|.+++++.|.++ .....+|+++|.+|...|+|++|+..|++++++
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 119 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDL-----RTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM 119 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH-----HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccCh-----hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 45588888999999999999999999999999977763 234568999999999999999999999999998
Q ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHh
Q 008613 144 --DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV------SPDDGTIADVLRDAKEILMK 197 (559)
Q Consensus 144 --dP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l------~P~~~~a~~~L~~a~~~l~~ 197 (559)
+|....+++.+|.+|..+|++++|+..|++++.+ .|....++..++.+...+++
T Consensus 120 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 181 (411)
T 4a1s_A 120 NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK 181 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence 6778899999999999999999999999999998 44556688888888888877
No 139
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.04 E-value=1.4e-09 Score=120.51 Aligned_cols=124 Identities=7% Similarity=-0.094 Sum_probs=113.9
Q ss_pred hHHhHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcC--CHH
Q 008613 64 MNYEFNAAKMLKKQGNELYSEGR----------FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK--QYD 131 (559)
Q Consensus 64 ~~~~~~~a~~lk~~Gn~~~k~g~----------y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg--~y~ 131 (559)
+...++....|..++.++...++ |+++++.|.+++..+|.+.. +|++|+.++.+++ +|+
T Consensus 56 l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~---------aW~hR~w~l~~l~~~~~~ 126 (567)
T 1dce_A 56 LGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG---------TWHHRCWLLSRLPEPNWA 126 (567)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHTCSSCCHH
T ss_pred HHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHcccccHH
Confidence 33344448889999999998888 99999999999999999865 9999999999999 779
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008613 132 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIG-RLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM 196 (559)
Q Consensus 132 eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg-~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~ 196 (559)
+++.+|+++++++|+|..+|+.|+.++..++ .+++++++++++++++|.+..+|...+.+...+.
T Consensus 127 ~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~ 192 (567)
T 1dce_A 127 RELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH 192 (567)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999 9999999999999999999999999999988763
No 140
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.03 E-value=2e-10 Score=124.44 Aligned_cols=106 Identities=8% Similarity=0.019 Sum_probs=92.8
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008613 67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 146 (559)
Q Consensus 67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~ 146 (559)
.+..+..+..+|.+|++.|+|++|+..|++++++.|.++. +|+++|.+|..+|+|++|+..|+++++++|+
T Consensus 36 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~---------~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 106 (477)
T 1wao_1 36 NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIK---------GYYRRAASNMALGKFRAALRDYETVVKVKPH 106 (477)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 3334899999999999999999999999999999888754 8999999999999999999999999999999
Q ss_pred CHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHHhCCCC
Q 008613 147 NVKALYRRGQA--YKDIGRLEEAVSDLS-----------NAHEVSPDD 181 (559)
Q Consensus 147 ~~kal~~rG~A--~~~lg~~eeAi~dle-----------kAl~l~P~~ 181 (559)
+..+++.++.+ +...|++++|+..++ +++.++|++
T Consensus 107 ~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 107 DKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp CTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 99999999999 889999999999999 888887764
No 141
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.03 E-value=1.5e-09 Score=98.52 Aligned_cols=89 Identities=7% Similarity=-0.053 Sum_probs=78.1
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008613 67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 146 (559)
Q Consensus 67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~ 146 (559)
.+..+..+.++|.++++.|+|++|+..|.++|.++|.++. +|+++|.||..+|+|++|+.+|.++++++|+
T Consensus 59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~---------a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEK---------ALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchH---------HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 4555788999999999999999999999999999988754 9999999999999999999999999999999
Q ss_pred CH-HHHHHHHHHHHHcCCH
Q 008613 147 NV-KALYRRGQAYKDIGRL 164 (559)
Q Consensus 147 ~~-kal~~rG~A~~~lg~~ 164 (559)
+. .+...++.+...++++
T Consensus 130 ~~~~~~~~l~~~~~~~~~~ 148 (162)
T 3rkv_A 130 AASVVAREMKIVTERRAEK 148 (162)
T ss_dssp GHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 98 5566666666655444
No 142
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.02 E-value=1.5e-09 Score=112.50 Aligned_cols=141 Identities=13% Similarity=0.001 Sum_probs=118.5
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-
Q 008613 67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA- 145 (559)
Q Consensus 67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP- 145 (559)
.+..+..+...|.+++..|+|.+|+.+|.+|+.+.+..... ....+.+++++|.||..+|+|++|+..|.+++++.+
T Consensus 137 ~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~ 214 (378)
T 3q15_A 137 DIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLY--SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMD 214 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCc--hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 45578899999999999999999999999999998876432 224567999999999999999999999999998743
Q ss_pred -----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613 146 -----KNVKALYRRGQAYKDIGRLEEAVSDLSNAHE-----VSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 209 (559)
Q Consensus 146 -----~~~kal~~rG~A~~~lg~~eeAi~dlekAl~-----l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i 209 (559)
....+++++|.+|..+|++++|+..|++++. .+|....+...++.+...+++.+.+...+++++
T Consensus 215 ~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 288 (378)
T 3q15_A 215 IQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGL 288 (378)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 2357899999999999999999999999999 677778888899999888877666544444444
No 143
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.02 E-value=3.9e-09 Score=109.27 Aligned_cols=111 Identities=11% Similarity=0.056 Sum_probs=99.9
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----
Q 008613 67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLA---- 142 (559)
Q Consensus 67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~---- 142 (559)
....+..+...|.++...|+|++|+++|.+++.+.+.... ......+++++|.||..+|+|++|+.++.++++
T Consensus 178 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~ 254 (378)
T 3q15_A 178 SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN---DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE 254 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 3456888999999999999999999999999998765543 345677999999999999999999999999999
Q ss_pred -cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008613 143 -YDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 180 (559)
Q Consensus 143 -ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~ 180 (559)
.+|..+.+++.+|.+|..+|++++|+..|++++.+.+.
T Consensus 255 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 255 KVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp HCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred hCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 78888999999999999999999999999999999654
No 144
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.01 E-value=1.1e-09 Score=95.56 Aligned_cols=96 Identities=11% Similarity=0.024 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008613 114 LACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE 193 (559)
Q Consensus 114 ~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~ 193 (559)
...|+++|.+|+..|+|++|+..|.+++.++|+++.+|+.+|.+|..+|+|++|+.+|++++.++|++..++..++.+..
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 88 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 88 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCccchh
Q 008613 194 ILMKEDGHHGPRGLLI 209 (559)
Q Consensus 194 ~l~~~~~~~~~~~~~i 209 (559)
.+++...+...+.+++
T Consensus 89 ~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 89 EMESYDEAIANLQRAY 104 (137)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHH
Confidence 9887776655555555
No 145
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.01 E-value=4e-09 Score=108.08 Aligned_cols=136 Identities=10% Similarity=-0.131 Sum_probs=115.5
Q ss_pred hHHHHHHHHHHHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhcCCCCCchhhhh
Q 008613 35 PEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEG--RFSNALQKYLLAKKNLQGIHSSEGRTL 112 (559)
Q Consensus 35 pee~~~~~~~~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g--~y~eAi~~Y~kAL~l~p~~~~~e~~~l 112 (559)
.++....+.++..+.|+. ...|..+|.++...+ +|.+++.++.++|..+|.+..
T Consensus 49 s~~aL~~t~~~L~~nP~~------------------~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~------ 104 (306)
T 3dra_A 49 SERALHITELGINELASH------------------YTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQ------ 104 (306)
T ss_dssp SHHHHHHHHHHHHHCTTC------------------HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCH------
T ss_pred CHHHHHHHHHHHHHCcHH------------------HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHH------
Confidence 345666667777777777 889999999999999 999999999999999999876
Q ss_pred HHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCCHH
Q 008613 113 LLACSLNSMSCY----LKT---KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLE--EAVSDLSNAHEVSPDDGT 183 (559)
Q Consensus 113 ~~~~~~nlA~~y----lkl---g~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~e--eAi~dlekAl~l~P~~~~ 183 (559)
+|+.|+.++ ..+ +++++++..|+++++++|+|..+|+.|+.++..+++++ +++..++++++++|.|-.
T Consensus 105 ---aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~s 181 (306)
T 3dra_A 105 ---IWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNS 181 (306)
T ss_dssp ---HHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHH
T ss_pred ---HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHH
Confidence 888888888 666 78889999999999999999999999999998888888 888888888888888888
Q ss_pred HHHHHHHHHHHHHh
Q 008613 184 IADVLRDAKEILMK 197 (559)
Q Consensus 184 a~~~L~~a~~~l~~ 197 (559)
+|...+.+...+++
T Consensus 182 AW~~R~~ll~~l~~ 195 (306)
T 3dra_A 182 AWSHRFFLLFSKKH 195 (306)
T ss_dssp HHHHHHHHHHSSGG
T ss_pred HHHHHHHHHHhccc
Confidence 88877777666543
No 146
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.01 E-value=1.4e-09 Score=91.63 Aligned_cols=81 Identities=20% Similarity=0.247 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHH
Q 008613 115 ACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD--DGTIADVLRDAK 192 (559)
Q Consensus 115 ~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~--~~~a~~~L~~a~ 192 (559)
.+|+++|.+|+..|+|++|+..|+++++++|+++.+|+.+|.+|..+|++++|+..|++++.+.|. +......+..+.
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~~~l 87 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDAK 87 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHHHHH
Confidence 489999999999999999999999999999999999999999999999999999999999999874 444555555554
Q ss_pred HHH
Q 008613 193 EIL 195 (559)
Q Consensus 193 ~~l 195 (559)
...
T Consensus 88 ~~~ 90 (100)
T 3ma5_A 88 LKA 90 (100)
T ss_dssp HHH
T ss_pred HHc
Confidence 444
No 147
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.01 E-value=6.5e-09 Score=91.25 Aligned_cols=108 Identities=19% Similarity=0.237 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---
Q 008613 70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK--- 146 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~--- 146 (559)
.+..+...|.+++..|+|++|+.+|.+++.+.+.... ......+++++|.+|...|+|++|+..+.+++++.+.
T Consensus 48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 124 (164)
T 3ro3_A 48 ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD---RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD 124 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccc
Confidence 4578889999999999999999999999998776543 3445678999999999999999999999999987432
Q ss_pred ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008613 147 ---NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 180 (559)
Q Consensus 147 ---~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~ 180 (559)
...+++.+|.+|..+|++++|+..|++++.+...
T Consensus 125 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 125 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred hHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999999987543
No 148
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.00 E-value=7.8e-10 Score=114.36 Aligned_cols=140 Identities=16% Similarity=0.107 Sum_probs=112.2
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCC-----------------
Q 008613 67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ----------------- 129 (559)
Q Consensus 67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~----------------- 129 (559)
....+..+..+|.+|+..|+|++|+.+|.+++.+.+.... ......+++++|.+|...|+
T Consensus 122 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~ 198 (411)
T 4a1s_A 122 RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGD---RLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA 198 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH
T ss_pred chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc---hHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH
Confidence 4667888999999999999999999999999998654332 34456799999999999999
Q ss_pred HHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHHh
Q 008613 130 YDECIKVGSEVLAYD------AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT------IADVLRDAKEILMK 197 (559)
Q Consensus 130 y~eAi~~~~~AL~ld------P~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~------a~~~L~~a~~~l~~ 197 (559)
|++|+..|.+++++. +....+++.+|.+|...|++++|+..|++++.+.+.... ++..++.+....++
T Consensus 199 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 278 (411)
T 4a1s_A 199 LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQ 278 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcC
Confidence 999999999999874 344679999999999999999999999999998775322 66667777666665
Q ss_pred hcCCCCCccchh
Q 008613 198 EDGHHGPRGLLI 209 (559)
Q Consensus 198 ~~~~~~~~~~~i 209 (559)
...+...++..+
T Consensus 279 ~~~A~~~~~~al 290 (411)
T 4a1s_A 279 FEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 554444444333
No 149
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.00 E-value=5.2e-10 Score=115.53 Aligned_cols=143 Identities=7% Similarity=-0.031 Sum_probs=75.6
Q ss_pred hhCCChHHHHHHHHHHHccCcHHHHH-HHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCch
Q 008613 30 LTHTPPEEVAEIGEKLANASPEEIAT-MRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSE 108 (559)
Q Consensus 30 l~~~~pee~~~~~~~~~~~~pee~~a-a~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e 108 (559)
+...+.++....+.++....|..... ......... ..-....+.++|.+|++.|+|++|+.+|.++|.++|.+..
T Consensus 190 ~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~--~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~-- 265 (338)
T 2if4_A 190 FKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMA--LAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPK-- 265 (338)
T ss_dssp CSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHH--HHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHH--
T ss_pred HhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHH--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--
Confidence 34556677776677666666665210 000000000 0011347889999999999999999999999999888754
Q ss_pred hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCHH
Q 008613 109 GRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAY-KDIGRLEEAVSDLSNAHEVSPDDGT 183 (559)
Q Consensus 109 ~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~-~~lg~~eeAi~dlekAl~l~P~~~~ 183 (559)
+|+++|.||..+|+|++|+.+|.++++++|++..++..++.++ ...++++++...|++++.+.|+++.
T Consensus 266 -------a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 266 -------ALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp -------HHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------------
T ss_pred -------HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 9999999999999999999999999999999999999999994 4567788899999999999998754
No 150
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.00 E-value=3.8e-10 Score=93.70 Aligned_cols=88 Identities=20% Similarity=0.157 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHH
Q 008613 116 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD--DGTIADVLRDAKE 193 (559)
Q Consensus 116 ~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~--~~~a~~~L~~a~~ 193 (559)
+++++|.+|...|+|++|+..|+++++++|++..+++.+|.+|..+|++++|+..|+++++++|+ +..++..++.+..
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~ 87 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALR 87 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999 9999999988887
Q ss_pred HH-HhhcCCCC
Q 008613 194 IL-MKEDGHHG 203 (559)
Q Consensus 194 ~l-~~~~~~~~ 203 (559)
.+ ++.+.+..
T Consensus 88 ~~~~~~~~A~~ 98 (112)
T 2kck_A 88 YIEGKEVEAEI 98 (112)
T ss_dssp TCSSCSHHHHH
T ss_pred HHhCCHHHHHH
Confidence 77 65554333
No 151
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.00 E-value=2e-09 Score=106.11 Aligned_cols=139 Identities=14% Similarity=0.098 Sum_probs=114.1
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008613 67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 146 (559)
Q Consensus 67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~ 146 (559)
....+..+...|.+++..|+|++|+.+|.+++.+.+.... ......+++++|.+|...|++++|+..+.+++++.+.
T Consensus 179 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 255 (338)
T 3ro2_A 179 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD---KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 255 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 3445678899999999999999999999999998776443 3445669999999999999999999999999998776
Q ss_pred C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHhhcCCCCCccch
Q 008613 147 N------VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD------GTIADVLRDAKEILMKEDGHHGPRGLL 208 (559)
Q Consensus 147 ~------~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~------~~a~~~L~~a~~~l~~~~~~~~~~~~~ 208 (559)
. ..+++.+|.+|...|++++|+..|++++.+.+.. ..++..++.+....++.+.+...+++.
T Consensus 256 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 256 LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 6 7899999999999999999999999999986542 346667777777776665544444433
No 152
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.99 E-value=1.2e-09 Score=111.70 Aligned_cols=140 Identities=16% Similarity=0.095 Sum_probs=115.1
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCC-----------------
Q 008613 67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ----------------- 129 (559)
Q Consensus 67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~----------------- 129 (559)
....+..+...|.+++..|+|++|+.+|.+++.+.+.... ......+++++|.+|...|+
T Consensus 83 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a 159 (406)
T 3sf4_A 83 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND---KVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEV 159 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc---ccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhH
Confidence 4556888999999999999999999999999999776543 34556799999999999999
Q ss_pred ---HHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHH
Q 008613 130 ---YDECIKVGSEVLAY------DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT------IADVLRDAKEI 194 (559)
Q Consensus 130 ---y~eAi~~~~~AL~l------dP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~------a~~~L~~a~~~ 194 (559)
|++|+..|.+++++ .|....+++.+|.+|..+|++++|+..|++++.+.+.... ++..++.+...
T Consensus 160 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 239 (406)
T 3sf4_A 160 RDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF 239 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 99999999999987 4455789999999999999999999999999998765432 67777777777
Q ss_pred HHhhcCCCCCccchh
Q 008613 195 LMKEDGHHGPRGLLI 209 (559)
Q Consensus 195 l~~~~~~~~~~~~~i 209 (559)
.++...+...+.+++
T Consensus 240 ~g~~~~A~~~~~~al 254 (406)
T 3sf4_A 240 LGEFETASEYYKKTL 254 (406)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHH
Confidence 766655444444443
No 153
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.99 E-value=1.9e-09 Score=106.29 Aligned_cols=139 Identities=16% Similarity=0.092 Sum_probs=112.9
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCC-----------------
Q 008613 67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ----------------- 129 (559)
Q Consensus 67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~----------------- 129 (559)
....+..+...|.+++..|+|++|+..|.+++.+.+.... ......+++++|.+|...|+
T Consensus 79 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a 155 (338)
T 3ro2_A 79 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND---KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDV 155 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHH
T ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhH
Confidence 4556888999999999999999999999999999876644 34456799999999999999
Q ss_pred ---HHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHH
Q 008613 130 ---YDECIKVGSEVLAY------DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG------TIADVLRDAKEI 194 (559)
Q Consensus 130 ---y~eAi~~~~~AL~l------dP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~------~a~~~L~~a~~~ 194 (559)
|++|+..+.+++.+ .+....+++.+|.+|...|++++|+..|++++.+.+... .++..++.+...
T Consensus 156 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 235 (338)
T 3ro2_A 156 RNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF 235 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence 99999999999887 344567999999999999999999999999999865432 266777777777
Q ss_pred HHhhcCCCCCccch
Q 008613 195 LMKEDGHHGPRGLL 208 (559)
Q Consensus 195 l~~~~~~~~~~~~~ 208 (559)
.++...+...++..
T Consensus 236 ~g~~~~A~~~~~~a 249 (338)
T 3ro2_A 236 LGEFETASEYYKKT 249 (338)
T ss_dssp HTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 76655544434433
No 154
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.98 E-value=1.1e-09 Score=109.69 Aligned_cols=140 Identities=15% Similarity=0.057 Sum_probs=109.0
Q ss_pred HhhCCChHHHHHHHHHHHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCch
Q 008613 29 QLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSE 108 (559)
Q Consensus 29 ~l~~~~pee~~~~~~~~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e 108 (559)
.....+.++......++....|.. +..+..+|.+|++.|+|++|+..|.+++++.|.+..
T Consensus 14 ~~~~g~~~~A~~~~~~al~~~p~~------------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-- 73 (281)
T 2c2l_A 14 LFVGRKYPEAAACYGRAITRNPLV------------------AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK-- 73 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSCC------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHH--
T ss_pred HHHcCCHHHHHHHHHHHHHhCCcc------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH--
Confidence 344556666666666666666655 888999999999999999999999999999888754
Q ss_pred hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH-------HHHHHHHH----------------------HHH
Q 008613 109 GRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV-------KALYRRGQ----------------------AYK 159 (559)
Q Consensus 109 ~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~-------kal~~rG~----------------------A~~ 159 (559)
+++++|.+|..+|+|++|+.+|.++++++|++. ...++++. ..+
T Consensus 74 -------~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l 146 (281)
T 2c2l_A 74 -------AHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRL 146 (281)
T ss_dssp -------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHH
T ss_pred -------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 899999999999999999999999999998652 11111110 112
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008613 160 DIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 195 (559)
Q Consensus 160 ~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l 195 (559)
..|++++|+..|+++++++|++..+...+..+....
T Consensus 147 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 182 (281)
T 2c2l_A 147 IAAERERELEECQRNHEGHEDDGHIRAQQACIEAKH 182 (281)
T ss_dssp HHHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHH
Confidence 367899999999999999999887777766554443
No 155
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.98 E-value=2.5e-09 Score=108.16 Aligned_cols=109 Identities=12% Similarity=0.021 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-
Q 008613 69 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN- 147 (559)
Q Consensus 69 ~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~- 147 (559)
..+..+.+.|.+|.. |+|++|+.+|.+++.+.+.... ......++.++|.+|.++|+|++|+.+|++++++.|++
T Consensus 114 ~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 189 (307)
T 2ifu_A 114 TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEER---LRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME 189 (307)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCC---hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Confidence 357888999999999 9999999999999999876533 23456799999999999999999999999999987654
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008613 148 -----VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG 182 (559)
Q Consensus 148 -----~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~ 182 (559)
..+++.+|.+|..+|++++|+..|++++ ++|+..
T Consensus 190 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~ 228 (307)
T 2ifu_A 190 NYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS 228 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence 3588999999999999999999999999 999764
No 156
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.97 E-value=1.6e-09 Score=116.53 Aligned_cols=92 Identities=10% Similarity=-0.047 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008613 70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK 149 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~k 149 (559)
.+..+.++|.+|++.|+|++|+..|.++|.++|.++. +|+++|.||+.+++|++|+.+|+++++++|++..
T Consensus 316 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~---------a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~ 386 (457)
T 1kt0_A 316 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEK---------GLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA 386 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHTTC----C
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHH---------HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence 3788999999999999999999999999999988754 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHH
Q 008613 150 ALYRRGQAYKDIGRLEEAVSD 170 (559)
Q Consensus 150 al~~rG~A~~~lg~~eeAi~d 170 (559)
+++.++.++..++++++|...
T Consensus 387 a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 387 ARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988754
No 157
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.97 E-value=2.7e-09 Score=107.95 Aligned_cols=112 Identities=14% Similarity=0.058 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CC-C
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD--AK-N 147 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ld--P~-~ 147 (559)
. .++..|..+++.++|++|+.+|++++... ++ .+...+++++|.++..+|++++|+..|++++... |. .
T Consensus 136 ~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~--d~-----~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~ 207 (282)
T 4f3v_A 136 L-VAWMKAVVYGAAERWTDVIDQVKSAGKWP--DK-----FLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACA 207 (282)
T ss_dssp H-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS--CH-----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTH
T ss_pred H-HHHHHHHHHHHcCCHHHHHHHHHHhhccC--Cc-----ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCcccc
Confidence 6 78889999999999999999999776532 11 1224589999999999999999999999999654 65 6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008613 148 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA 191 (559)
Q Consensus 148 ~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a 191 (559)
+.+++++|.++..+|+.++|+..|++++.++|+ ..++..|...
T Consensus 208 ~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~~ 250 (282)
T 4f3v_A 208 RAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKDP 250 (282)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhCC
Confidence 789999999999999999999999999999999 8777666443
No 158
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.97 E-value=8.1e-10 Score=102.31 Aligned_cols=85 Identities=14% Similarity=0.104 Sum_probs=72.2
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHH
Q 008613 55 TMRARIDAQMNYEFNAAKMLKKQGNELYSEGRF----------SNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCY 124 (559)
Q Consensus 55 aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y----------~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~y 124 (559)
.+...++..++..+..++.|.+.|.++...++| ++||..|++||+++|..+. +|+++|.+|
T Consensus 20 eA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~---------A~~~LG~ay 90 (158)
T 1zu2_A 20 QIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDE---------AVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHH---------HHHHHHHHH
Confidence 344444555555555599999999999998875 5999999999999999865 999999999
Q ss_pred HHcC-----------CHHHHHHHHHHHHHcCCCCH
Q 008613 125 LKTK-----------QYDECIKVGSEVLAYDAKNV 148 (559)
Q Consensus 125 lklg-----------~y~eAi~~~~~AL~ldP~~~ 148 (559)
..+| +|++|+.+|++||+++|++.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 9885 89999999999999999984
No 159
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.96 E-value=1.1e-08 Score=104.84 Aligned_cols=171 Identities=9% Similarity=-0.098 Sum_probs=141.2
Q ss_pred CCHHHHHHHHHHhhCCChHHHHHHHH--H-HHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHH----HHc---CCH
Q 008613 18 MRPEDLKCAAEQLTHTPPEEVAEIGE--K-LANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNEL----YSE---GRF 87 (559)
Q Consensus 18 m~pedl~~a~e~l~~~~pee~~~~~~--~-~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~----~k~---g~y 87 (559)
-..++.....+.+-...|+..-.-.. . +..+....+....+.+...+...++....|..++.++ ... +++
T Consensus 47 e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 47 EYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 34455666666666667776544222 1 2222212455666777777777888888999999988 666 899
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC--
Q 008613 88 SNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD--ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGR-- 163 (559)
Q Consensus 88 ~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~--eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~-- 163 (559)
.+++.+|.+++..+|.+.. +|++|+.++.+++.|+ ++++.|+++|+++|.|..+|+.|+.++..+++
T Consensus 127 ~~EL~~~~~~l~~~pkny~---------aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~ 197 (306)
T 3dra_A 127 YREFDILEAMLSSDPKNHH---------VWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLA 197 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGC
T ss_pred HHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccc
Confidence 9999999999999999865 9999999999999999 99999999999999999999999999999998
Q ss_pred ----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 008613 164 ----LEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 197 (559)
Q Consensus 164 ----~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~ 197 (559)
+++++..+++++.++|+|..+|..++.+...+++
T Consensus 198 ~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 198 TDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDR 235 (306)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC
T ss_pred hhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999888764
No 160
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.96 E-value=1.6e-09 Score=93.34 Aligned_cols=84 Identities=8% Similarity=0.062 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008613 67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 146 (559)
Q Consensus 67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~ 146 (559)
.+..+..+..+|.+++..|+|++|+..|.+++++.|.++. +++++|.||..+|+|++|+..|.++++++|+
T Consensus 23 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 93 (117)
T 3k9i_A 23 GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA---------LRVFYAMVLYNLGRYEQGVELLLKIIAETSD 93 (117)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 3555889999999999999999999999999999998865 9999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHH
Q 008613 147 NVKALYRRGQAYK 159 (559)
Q Consensus 147 ~~kal~~rG~A~~ 159 (559)
++........+..
T Consensus 94 ~~~~~~~~~ai~~ 106 (117)
T 3k9i_A 94 DETIQSYKQAILF 106 (117)
T ss_dssp CHHHHHTHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 9876544433333
No 161
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.96 E-value=3.5e-09 Score=103.96 Aligned_cols=124 Identities=15% Similarity=0.145 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhHHhHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHH---
Q 008613 54 ATMRARIDAQMNYEFNAAKMLKKQGNELYS----EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK--- 126 (559)
Q Consensus 54 ~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k----~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylk--- 126 (559)
..+...++...+ ...+..+..+|.+++. .+++++|+.+|.+++++. + ..+++++|.+|..
T Consensus 23 ~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~---------~~a~~~lg~~~~~g~~ 89 (273)
T 1ouv_A 23 TQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--Y---------SNGCHLLGNLYYSGQG 89 (273)
T ss_dssp HHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C---------HHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--C---------HHHHHHHHHHHhCCCC
Confidence 334444444433 3345667777777777 777777777777777763 2 2377777777777
Q ss_pred -cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008613 127 -TKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKD----IGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI 194 (559)
Q Consensus 127 -lg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~----lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~ 194 (559)
.+++++|+..|++++++ +++.+++.+|.+|.. .+++++|+.+|++++++. +..++..++.+...
T Consensus 90 ~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~ 158 (273)
T 1ouv_A 90 VSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDA 158 (273)
T ss_dssp SCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHc
Confidence 77777777777777776 377777777777777 777777777777777764 45566666666554
No 162
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.95 E-value=4.3e-09 Score=87.03 Aligned_cols=79 Identities=6% Similarity=-0.018 Sum_probs=61.7
Q ss_pred HHHHHHhcCCCCCchhhhhHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008613 94 YLLAKKNLQGIHSSEGRTLLLA-CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLS 172 (559)
Q Consensus 94 Y~kAL~l~p~~~~~e~~~l~~~-~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dle 172 (559)
|.+|+....... ........ +|+++|.||..+|+|++|+..|+++++++|++..++++ +.+.+++..|+
T Consensus 16 ~~~A~~~~~~al--~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~~~a~~~~~ 85 (99)
T 2kc7_A 16 IENALQALEEFL--QTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMVMDILNFYN 85 (99)
T ss_dssp HHHHHHHHHHHH--HHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHHHHHHHHHC
T ss_pred HHHHHHHHHHHH--HHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHHHHHHHHHH
Confidence 666666543211 11122345 89999999999999999999999999999999998865 67888999999
Q ss_pred HHHHhCCCCH
Q 008613 173 NAHEVSPDDG 182 (559)
Q Consensus 173 kAl~l~P~~~ 182 (559)
+++.++|++.
T Consensus 86 ~~~~~~p~~~ 95 (99)
T 2kc7_A 86 KDMYNQLEHH 95 (99)
T ss_dssp CTTHHHHCCS
T ss_pred HHhccCcccc
Confidence 9888888753
No 163
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.95 E-value=1.8e-08 Score=84.75 Aligned_cols=83 Identities=27% Similarity=0.339 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 150 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka 150 (559)
...+...|.+++..|+|++|+..|.+++.+.|.++. ++++++.+|...|++++|+..+.++++++|+++.+
T Consensus 43 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 113 (125)
T 1na0_A 43 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE---------AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 113 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHH---------HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH
Confidence 677889999999999999999999999999887644 88999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcC
Q 008613 151 LYRRGQAYKDIG 162 (559)
Q Consensus 151 l~~rG~A~~~lg 162 (559)
+..++.++...|
T Consensus 114 ~~~l~~~~~~~g 125 (125)
T 1na0_A 114 KQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhcc
Confidence 999999987654
No 164
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.95 E-value=1.5e-08 Score=84.58 Aligned_cols=103 Identities=9% Similarity=0.026 Sum_probs=86.7
Q ss_pred hhCCChHHHHHHHHHHHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchh
Q 008613 30 LTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEG 109 (559)
Q Consensus 30 l~~~~pee~~~~~~~~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~ 109 (559)
+...+.++......++....|.+ +..+...|.+++..|+|++|+..|.+++.+.|.++.
T Consensus 15 ~~~~~~~~A~~~~~~~~~~~~~~------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~--- 73 (118)
T 1elw_A 15 LSVGNIDDALQCYSEAIKLDPHN------------------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGK--- 73 (118)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTC------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH---
T ss_pred HHcccHHHHHHHHHHHHHHCCCc------------------HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHH---
Confidence 34455555555555555555544 778999999999999999999999999999888754
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008613 110 RTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYK 159 (559)
Q Consensus 110 ~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~ 159 (559)
+++++|.+|..+|++++|+..+.++++++|+++.++..++.+..
T Consensus 74 ------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 74 ------GYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp ------HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 89999999999999999999999999999999999999887753
No 165
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.94 E-value=1.5e-08 Score=99.35 Aligned_cols=125 Identities=14% Similarity=0.096 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHH--
Q 008613 53 IATMRARIDAQMNYEFNAAKMLKKQGNELYS----EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK-- 126 (559)
Q Consensus 53 ~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k----~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylk-- 126 (559)
+..+...+....+.. .+..+..+|.+++. .+++++|+..|.++++.. + ..+++++|.+|..
T Consensus 58 ~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~---------~~a~~~lg~~~~~~~ 124 (273)
T 1ouv_A 58 LKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--Y---------AEGCASLGGIYHDGK 124 (273)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C---------HHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--C---------ccHHHHHHHHHHcCC
Confidence 344444444444332 57889999999999 999999999999999873 3 2489999999999
Q ss_pred --cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008613 127 --TKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKD----IGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI 194 (559)
Q Consensus 127 --lg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~----lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~ 194 (559)
.+++++|+..|+++++++ ++.+++++|.+|.. .+++++|+.+|++++++ ++..++..++.+...
T Consensus 125 ~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~ 194 (273)
T 1ouv_A 125 VVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHH 194 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHc
Confidence 999999999999999986 78999999999999 99999999999999987 467788888888766
No 166
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.92 E-value=7.9e-09 Score=108.30 Aligned_cols=96 Identities=9% Similarity=0.003 Sum_probs=88.8
Q ss_pred HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008613 66 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA 145 (559)
Q Consensus 66 ~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP 145 (559)
.....+..+.++|.+|++.|+|++|+.+|.++|++.|.++. +|+++|.||..+|+|++|+.+|+++++++|
T Consensus 268 ~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~---------a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P 338 (370)
T 1ihg_A 268 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTK---------ALYRRAQGWQGLKEYDQALADLKKAQEIAP 338 (370)
T ss_dssp GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHH---------HHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 45566889999999999999999999999999999887754 999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHH
Q 008613 146 KNVKALYRRGQAYKDIGRLEEAVSD 170 (559)
Q Consensus 146 ~~~kal~~rG~A~~~lg~~eeAi~d 170 (559)
++..++..++.++..+++++++.+.
T Consensus 339 ~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 339 EDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887654
No 167
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.91 E-value=1.8e-08 Score=106.25 Aligned_cols=135 Identities=12% Similarity=0.023 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHH--
Q 008613 52 EIATMRARIDAQMNYEFNAAKMLKKQGNELYS---EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK-- 126 (559)
Q Consensus 52 e~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k---~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylk-- 126 (559)
++..+...++..+...+..+..+...|.+++. .+++.+|++.|.++++++|.++. ++.+++.++..
T Consensus 153 ~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~---------~~~~l~~~~~~~~ 223 (472)
T 4g1t_A 153 QNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY---------LKVLLALKLHKMR 223 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHH---------HHHHHHHHHHHCC
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchH---------HHHHHHHHHHHHH
Confidence 34455566666666666667777777777543 56778888889999988887754 67777766554
Q ss_pred --cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008613 127 --TKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 195 (559)
Q Consensus 127 --lg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l 195 (559)
.+++++|+..+++++.++|+++.+++++|.+|...|++++|+..|+++++++|++..++..++.+....
T Consensus 224 ~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~ 294 (472)
T 4g1t_A 224 EEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAK 294 (472)
T ss_dssp ------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999999998876544
No 168
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.90 E-value=4.6e-09 Score=116.41 Aligned_cols=134 Identities=9% Similarity=-0.048 Sum_probs=120.1
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcC-CHH
Q 008613 55 TMRARIDAQMNYEFNAAKMLKKQGNELYSEG--RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK-QYD 131 (559)
Q Consensus 55 aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g--~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg-~y~ 131 (559)
.+....+..+...++...+|..++.++.+.+ +|++++++|.++++++|.+.. +|++|+.++.+++ .++
T Consensus 91 ~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~---------aW~~R~~~l~~l~~~~~ 161 (567)
T 1dce_A 91 AELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFH---------CWDYRRFVAAQAAVAPA 161 (567)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcccccc---------HHHHHHHHHHHcCCChH
Confidence 3445555556667777889999999999999 779999999999999998855 9999999999999 999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 008613 132 ECIKVGSEVLAYDAKNVKALYRRGQAYKDI--------------GRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 197 (559)
Q Consensus 132 eAi~~~~~AL~ldP~~~kal~~rG~A~~~l--------------g~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~ 197 (559)
+++++++++|+++|.+..+|+.|+.++..+ +.+++|++++.+|+.++|+|..+|..++.+....++
T Consensus 162 ~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 162 EELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp HHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCC
Confidence 999999999999999999999999999986 668999999999999999999999999988777655
No 169
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.90 E-value=6.3e-08 Score=89.50 Aligned_cols=112 Identities=14% Similarity=0.105 Sum_probs=94.2
Q ss_pred HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008613 66 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA 145 (559)
Q Consensus 66 ~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP 145 (559)
.....+..+...|.+++..|+|++|+.+|.+++.+....++. ......+++++|.+|..+|+|++|+..+.+++++.+
T Consensus 61 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 138 (203)
T 3gw4_A 61 DHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPED--PLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQ 138 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCcc--HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 455668889999999999999999999999999986544321 223567899999999999999999999999997643
Q ss_pred C--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008613 146 K--N----VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP 179 (559)
Q Consensus 146 ~--~----~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P 179 (559)
. + ..++..+|.+|...|++++|+..|++++.+..
T Consensus 139 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 139 QADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 2 2 35679999999999999999999999998854
No 170
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.90 E-value=5.3e-08 Score=100.75 Aligned_cols=134 Identities=10% Similarity=-0.021 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhcCCCC
Q 008613 36 EEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGR----------FSNALQKYLLAKKNLQGIH 105 (559)
Q Consensus 36 ee~~~~~~~~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~----------y~eAi~~Y~kAL~l~p~~~ 105 (559)
++....+.++....|+. ...|..++.++...++ |.+++.++.++|..+|.+.
T Consensus 47 ~eaL~~t~~~L~~nP~~------------------ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny 108 (331)
T 3dss_A 47 ESVLELTSQILGANPDF------------------ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY 108 (331)
T ss_dssp HHHHHHHHHHHTTCTTC------------------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHCchh------------------HHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCH
Confidence 34556666677777776 5566666666555444 7899999999999999986
Q ss_pred CchhhhhHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCH
Q 008613 106 SSEGRTLLLACSLNSMSCYLKTKQ--YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGR-LEEAVSDLSNAHEVSPDDG 182 (559)
Q Consensus 106 ~~e~~~l~~~~~~nlA~~ylklg~--y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~-~eeAi~dlekAl~l~P~~~ 182 (559)
. +|++|+.|+..+++ |++++..|+++++++|.|..+|+.|+.++..++. +++++.++.+++.++|.|.
T Consensus 109 ~---------aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~ 179 (331)
T 3dss_A 109 G---------TWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNY 179 (331)
T ss_dssp H---------HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCH
T ss_pred H---------HHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCH
Confidence 5 99999999999994 9999999999999999999999999999999999 6999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 008613 183 TIADVLRDAKEILM 196 (559)
Q Consensus 183 ~a~~~L~~a~~~l~ 196 (559)
.+|..+..+...+.
T Consensus 180 SAW~~R~~ll~~l~ 193 (331)
T 3dss_A 180 SSWHYRSCLLPQLH 193 (331)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988873
No 171
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.89 E-value=4.5e-09 Score=90.50 Aligned_cols=94 Identities=17% Similarity=0.099 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHH
Q 008613 116 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV---KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD---GTIADVLR 189 (559)
Q Consensus 116 ~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~---kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~---~~a~~~L~ 189 (559)
.++++|.+++..|+|++|+..|.++++.+|+++ .+++.+|.+|...|+|++|+..|++++.++|++ +.++..++
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 578999999999999999999999999999998 899999999999999999999999999999999 88899999
Q ss_pred HHHHHHHhhcCCCCCccchh
Q 008613 190 DAKEILMKEDGHHGPRGLLI 209 (559)
Q Consensus 190 ~a~~~l~~~~~~~~~~~~~i 209 (559)
.+...+++...+...++.++
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~ 103 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVA 103 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 99888877766555555554
No 172
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.87 E-value=3.1e-08 Score=99.02 Aligned_cols=139 Identities=15% Similarity=0.090 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008613 68 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN 147 (559)
Q Consensus 68 ~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~ 147 (559)
+.....+..++..++..|+|++|++.|.+++...+.... .......++.+|.+|...|+|++|+..+.+++++.+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 148 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPE---FQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG 148 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHH---HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChh---HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC
Confidence 445677888999999999999999999999998665321 23345567889999999999999999999999876544
Q ss_pred ------HHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613 148 ------VKALYRRGQAYKDIGRLEEAVSDLSNAH---EVSPDDG----TIADVLRDAKEILMKEDGHHGPRGLLI 209 (559)
Q Consensus 148 ------~kal~~rG~A~~~lg~~eeAi~dlekAl---~l~P~~~----~a~~~L~~a~~~l~~~~~~~~~~~~~i 209 (559)
..+|+.+|.+|..+|+|++|+..|++++ ...|++. .++..++.+...+++.+.+...+.+++
T Consensus 149 ~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal 223 (293)
T 2qfc_A 149 IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 6799999999999999999999999999 4566653 577888888888877776666666555
No 173
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.86 E-value=1.4e-08 Score=110.62 Aligned_cols=130 Identities=12% Similarity=0.088 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----C
Q 008613 70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY-----D 144 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l-----d 144 (559)
.+..+.+.+..+..+|+|++|+..|.++|++....-. +.+...+..+.|+|.+|..+|+|++|+.+|.++|++ .
T Consensus 308 ~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg-~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG 386 (490)
T 3n71_A 308 FSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFA-DTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYH 386 (490)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBC-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcC
Confidence 3555666777888999999999999999998655332 234457789999999999999999999999999975 4
Q ss_pred CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHH---HHHHHHHHHHHhhcC
Q 008613 145 AKN---VKALYRRGQAYKDIGRLEEAVSDLSNAHEV-----SPDDGTIA---DVLRDAKEILMKEDG 200 (559)
Q Consensus 145 P~~---~kal~~rG~A~~~lg~~eeAi~dlekAl~l-----~P~~~~a~---~~L~~a~~~l~~~~~ 200 (559)
|++ ...|+++|.+|..+|+|++|+..|++|+.+ -|+++.+. ..|..++..++.++.
T Consensus 387 ~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ 453 (490)
T 3n71_A 387 HNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQ 453 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 555 578999999999999999999999999986 46776544 455556655555544
No 174
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=7.1e-08 Score=84.26 Aligned_cols=108 Identities=8% Similarity=-0.060 Sum_probs=88.4
Q ss_pred HHhhCCChHHHHHHHHHHHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCc
Q 008613 28 EQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSS 107 (559)
Q Consensus 28 e~l~~~~pee~~~~~~~~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~ 107 (559)
..+...+.++......++....|+. ......+...|.+++..|+|++|+..|.+++.+.|.++.
T Consensus 37 ~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~- 100 (148)
T 2dba_A 37 ELFKCGDYGGALAAYTQALGLDATP---------------QDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVK- 100 (148)
T ss_dssp HHHTTTCHHHHHHHHHHHHTSCCCH---------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHH-
T ss_pred HHHHhCCHHHHHHHHHHHHHHcccc---------------hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHH-
Confidence 3445556666666666655555543 113678889999999999999999999999999888754
Q ss_pred hhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008613 108 EGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYK 159 (559)
Q Consensus 108 e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~ 159 (559)
+|+++|.||..+|+|++|+..|.++++++|++..++..++.+..
T Consensus 101 --------~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 101 --------ALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp --------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred --------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999888877654
No 175
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.82 E-value=5.9e-08 Score=99.44 Aligned_cols=126 Identities=12% Similarity=0.014 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD------ 144 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ld------ 144 (559)
+..+...|..++..|+|++|+..|.+++.+.+.... ......+++++|.+|...|+|++|+..|++++++.
T Consensus 53 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~ 129 (373)
T 1hz4_A 53 IVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV---WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLE 129 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCc---HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc
Confidence 456677788888888888888888888877665443 22334567778888888888888888888887764
Q ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHHHhhc
Q 008613 145 --AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD-----GTIADVLRDAKEILMKED 199 (559)
Q Consensus 145 --P~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~-----~~a~~~L~~a~~~l~~~~ 199 (559)
|....+++.+|.+|...|++++|+..|++++.+.+.. ..++..++.+....++..
T Consensus 130 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 191 (373)
T 1hz4_A 130 QLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLD 191 (373)
T ss_dssp TSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHH
T ss_pred cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3345667778888888888888888888888777642 234555555555554443
No 176
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.81 E-value=3.9e-08 Score=94.06 Aligned_cols=112 Identities=11% Similarity=0.002 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q 008613 70 AAKMLKKQGNELYSEG----RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK----TKQYDECIKVGSEVL 141 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g----~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylk----lg~y~eAi~~~~~AL 141 (559)
.+..+..+|.+|.. + ++++|+.+|.++++. .++ .+++++|.+|.. .+++++|+..|++++
T Consensus 49 ~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~--g~~---------~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 116 (212)
T 3rjv_A 49 DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA--GSK---------SGEIVLARVLVNRQAGATDVAHAITLLQDAA 116 (212)
T ss_dssp CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT--TCH---------HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC--CCH---------HHHHHHHHHHHcCCCCccCHHHHHHHHHHHH
Confidence 36778889999888 6 899999999999763 443 389999999988 889999999999999
Q ss_pred HcCC--CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008613 142 AYDA--KNVKALYRRGQAYKD----IGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI 194 (559)
Q Consensus 142 ~ldP--~~~kal~~rG~A~~~----lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~ 194 (559)
++.| +++.+++++|.+|.. .+++++|+.+|++++++ |.++.+...|+.+...
T Consensus 117 ~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~ 174 (212)
T 3rjv_A 117 RDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQ 174 (212)
T ss_dssp SSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHH
T ss_pred HcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHc
Confidence 9888 469999999999999 88999999999999998 6677788888877654
No 177
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.79 E-value=1.4e-07 Score=97.57 Aligned_cols=168 Identities=12% Similarity=0.020 Sum_probs=135.0
Q ss_pred CCHHHHHHHHHHhhCCChHHHHHHHHH---HHc----cCcHH----HHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCC
Q 008613 18 MRPEDLKCAAEQLTHTPPEEVAEIGEK---LAN----ASPEE----IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGR 86 (559)
Q Consensus 18 m~pedl~~a~e~l~~~~pee~~~~~~~---~~~----~~pee----~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~ 86 (559)
-..++.-.+.+.+-...|+.+..-..+ +.. ..+++ +.....-+...+...++....|..++.++...++
T Consensus 44 e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~ 123 (331)
T 3dss_A 44 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE 123 (331)
T ss_dssp CCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSS
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCc
Confidence 334555666677777788765442221 111 12222 3445566666677788889999999999999884
Q ss_pred --HHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc--
Q 008613 87 --FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ-YDECIKVGSEVLAYDAKNVKALYRRGQAYKDI-- 161 (559)
Q Consensus 87 --y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~-y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~l-- 161 (559)
|.+++.+|.++++.+|.+.. +|++++.+...++. +++++++++++|+++|.|..+|+.|+.++..+
T Consensus 124 ~~~~~EL~~~~k~l~~dprNy~---------AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 124 PNWARELELCARFLEADERNFH---------CWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSC
T ss_pred ccHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhh
Confidence 99999999999999998865 99999999999999 69999999999999999999999999999998
Q ss_pred ------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008613 162 ------------GRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI 194 (559)
Q Consensus 162 ------------g~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~ 194 (559)
+.+++++.++.+++.++|+|..+|..+..+...
T Consensus 195 ~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~ 239 (331)
T 3dss_A 195 QPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGA 239 (331)
T ss_dssp CC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHS
T ss_pred ccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 569999999999999999999999877666543
No 178
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.78 E-value=3.3e-08 Score=102.94 Aligned_cols=136 Identities=11% Similarity=-0.049 Sum_probs=120.6
Q ss_pred hHHHHHHHHHHHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCCCCCchhhhhH
Q 008613 35 PEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEG-RFSNALQKYLLAKKNLQGIHSSEGRTLL 113 (559)
Q Consensus 35 pee~~~~~~~~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g-~y~eAi~~Y~kAL~l~p~~~~~e~~~l~ 113 (559)
.++......++....|+. ...|..++.++...+ .+++++..+.++|..+|.+..
T Consensus 70 se~AL~lt~~~L~~nP~~------------------ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~------- 124 (349)
T 3q7a_A 70 SERALELTEIIVRMNPAH------------------YTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQ------- 124 (349)
T ss_dssp SHHHHHHHHHHHHHCTTC------------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHH-------
T ss_pred CHHHHHHHHHHHHhCchh------------------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHH-------
Confidence 344555556666666666 888999999999999 599999999999999999865
Q ss_pred HHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhCCCCHH
Q 008613 114 LACSLNSMSCYLKT-K-QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLE--------EAVSDLSNAHEVSPDDGT 183 (559)
Q Consensus 114 ~~~~~nlA~~ylkl-g-~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~e--------eAi~dlekAl~l~P~~~~ 183 (559)
+|+.|+.|+..+ + ++++++..|.++|+++|+|..+|+.|+.++..+++++ +++..++++++++|.|..
T Consensus 125 --aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~S 202 (349)
T 3q7a_A 125 --VWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNS 202 (349)
T ss_dssp --HHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred --HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHH
Confidence 999999999998 8 9999999999999999999999999999999999988 999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 008613 184 IADVLRDAKEILMK 197 (559)
Q Consensus 184 a~~~L~~a~~~l~~ 197 (559)
+|...+.+...+.+
T Consensus 203 AW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 203 AWGWRWYLRVSRPG 216 (349)
T ss_dssp HHHHHHHHHTTSTT
T ss_pred HHHHHHHHHHhccc
Confidence 99999988776643
No 179
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.77 E-value=4e-08 Score=90.16 Aligned_cols=103 Identities=12% Similarity=0.142 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcC-C-CCHHHHHHHHHHHHHc
Q 008613 87 FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK---QYDECIKVGSEVLAYD-A-KNVKALYRRGQAYKDI 161 (559)
Q Consensus 87 y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg---~y~eAi~~~~~AL~ld-P-~~~kal~~rG~A~~~l 161 (559)
...+.+.|.+.+...+.. ..+.++.|.|+.+.+ +++++|..++.+++.+ | ++..++|++|.+|+.+
T Consensus 14 l~~~~~~y~~e~~~~~~~---------~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl 84 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVS---------KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRL 84 (152)
T ss_dssp HHHHHHHHHHHHHTTCCC---------HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccCCCc---------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHc
Confidence 456777888888765644 348999999999988 7779999999999999 7 6799999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 008613 162 GRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE 198 (559)
Q Consensus 162 g~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~ 198 (559)
++|++|+.+++++|+++|+|..+......+.+++.+.
T Consensus 85 ~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~~~~kd 121 (152)
T 1pc2_A 85 KEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKKD 121 (152)
T ss_dssp SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998888653
No 180
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.77 E-value=1.9e-08 Score=84.51 Aligned_cols=81 Identities=12% Similarity=-0.004 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--C
Q 008613 70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK--N 147 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~--~ 147 (559)
.+..+..+|.+++..|+|++|+..|.++++++|.++. +|+++|.||..+|+|++|+..|++++++.|. +
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---------a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~ 76 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVG---------TYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT 76 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCc
Confidence 3778999999999999999999999999999999876 9999999999999999999999999998764 3
Q ss_pred HHHHHHHHHHHH
Q 008613 148 VKALYRRGQAYK 159 (559)
Q Consensus 148 ~kal~~rG~A~~ 159 (559)
..+...+...+.
T Consensus 77 ~~~~~~l~~~l~ 88 (100)
T 3ma5_A 77 QKDLSELQDAKL 88 (100)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 444444444433
No 181
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.77 E-value=5.9e-08 Score=105.25 Aligned_cols=146 Identities=5% Similarity=-0.143 Sum_probs=117.5
Q ss_pred HHHHHHHHhH-HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHH
Q 008613 56 MRARIDAQMN-YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 134 (559)
Q Consensus 56 a~~~l~~~~~-~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi 134 (559)
+.+.+...+. ..+.....+...|..+.+.|++++|+..|.+++.+.|.++ ..+|.+++.++.+.|++++|+
T Consensus 305 A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~--------~~~~~~~~~~~~~~~~~~~A~ 376 (530)
T 2ooe_A 305 AANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP--------TLVYIQYMKFARRAEGIKSGR 376 (530)
T ss_dssp HHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCH--------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCc--------hHHHHHHHHHHHHhcCHHHHH
Confidence 4444455444 3455688899999999999999999999999999877653 138999999999999999999
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613 135 KVGSEVLAYDAKNVKALYRRGQA-YKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 209 (559)
Q Consensus 135 ~~~~~AL~ldP~~~kal~~rG~A-~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i 209 (559)
..|.++++..|.....+...+.. +...|++++|+..|+++++++|+++.++..+..+...+++..++..-+++++
T Consensus 377 ~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al 452 (530)
T 2ooe_A 377 MIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVL 452 (530)
T ss_dssp HHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHH
Confidence 99999999999888888776665 4469999999999999999999999999888887766655444433344333
No 182
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.77 E-value=2e-08 Score=85.58 Aligned_cols=84 Identities=8% Similarity=-0.086 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--C
Q 008613 70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK--N 147 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~--~ 147 (559)
.+..+..+|.+++..|+|++|+..|.+++.+.|.++. +|+++|.||..+|++++|+..|+++++++|. +
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 88 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSV---------AWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGD 88 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccc
Confidence 3788999999999999999999999999999888754 8999999999999999999999999999884 4
Q ss_pred HHHHHHHHHHHHHcC
Q 008613 148 VKALYRRGQAYKDIG 162 (559)
Q Consensus 148 ~kal~~rG~A~~~lg 162 (559)
..++..+...+..++
T Consensus 89 ~~~~~~l~~~l~~l~ 103 (115)
T 2kat_A 89 QQVVKELQVFLRRLA 103 (115)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 455444444444433
No 183
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.76 E-value=1.4e-08 Score=86.34 Aligned_cols=96 Identities=13% Similarity=0.035 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHH
Q 008613 114 LACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD-------GTIAD 186 (559)
Q Consensus 114 ~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~-------~~a~~ 186 (559)
..+|+++|.+|...|+|++|+..|.++++++|+++.+++.+|.+|...|++++|+..|++++.++|++ ..++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 45889999999999999999999999999999999999999999999999999999999999998877 78888
Q ss_pred HHHHHHHHHHhhcCCCCCccchh
Q 008613 187 VLRDAKEILMKEDGHHGPRGLLI 209 (559)
Q Consensus 187 ~L~~a~~~l~~~~~~~~~~~~~i 209 (559)
.++.+...+++...+...+.+++
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~ 106 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSL 106 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHH
Confidence 88888888776665544444444
No 184
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.74 E-value=3.7e-08 Score=102.60 Aligned_cols=170 Identities=9% Similarity=-0.041 Sum_probs=137.9
Q ss_pred CCHHHHHHHHHHhhCCChHHHHHHHHH---HHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHc-C-CHHHHHH
Q 008613 18 MRPEDLKCAAEQLTHTPPEEVAEIGEK---LANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSE-G-RFSNALQ 92 (559)
Q Consensus 18 m~pedl~~a~e~l~~~~pee~~~~~~~---~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~-g-~y~eAi~ 92 (559)
-..++...+.+.+-...|+....-..+ +..+. ..+.....-+...+...++....|..++.++... + ++.+++.
T Consensus 68 e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~-~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLN-KSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 344455556666666677655432221 22221 1244556666677777888899999999999987 7 9999999
Q ss_pred HHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC-
Q 008613 93 KYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD--------ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGR- 163 (559)
Q Consensus 93 ~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~--------eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~- 163 (559)
+|.++|..+|.+.. +|++|+.++.+++.++ +++++++++|+++|.|..+|+.|+.++..+++
T Consensus 147 ~~~k~L~~dpkNy~---------AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 147 YIHGSLLPDPKNYH---------TWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp HHHHHTSSCTTCHH---------HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTC
T ss_pred HHHHHHHhCCCCHH---------HHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcccc
Confidence 99999999998865 9999999999999988 99999999999999999999999999999997
Q ss_pred ------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 008613 164 ------LEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 197 (559)
Q Consensus 164 ------~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~ 197 (559)
++++++.+++++.++|+|..+|..+..+....++
T Consensus 218 ~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred ccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 8999999999999999999999998888776643
No 185
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.73 E-value=1.6e-07 Score=89.67 Aligned_cols=113 Identities=9% Similarity=-0.045 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q 008613 70 AAKMLKKQGNELYS----EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK----TKQYDECIKVGSEVL 141 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k----~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylk----lg~y~eAi~~~~~AL 141 (559)
.+..+..+|.+|+. .+++.+|+.+|.++++..+.+ -...+++++|.+|.. .+++++|+.+|++++
T Consensus 84 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~-------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 84 SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESD-------AAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSH-------HHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCc-------chHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 46778899999998 999999999999999875521 013489999999999 889999999999999
Q ss_pred HcCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008613 142 AYDAKNVKALYRRGQAYKDI-G-----RLEEAVSDLSNAHEVSPDDGTIADVLRDAK 192 (559)
Q Consensus 142 ~ldP~~~kal~~rG~A~~~l-g-----~~eeAi~dlekAl~l~P~~~~a~~~L~~a~ 192 (559)
++ |.++.+++++|.+|..- + ++++|+.+|+++++. .+..+...|..+.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~--g~~~A~~~l~~l~ 210 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE--GFDTGCEEFDRIS 210 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH--TCHHHHHHHHHHH
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHhh
Confidence 98 77888999999999865 3 899999999999987 4566666666553
No 186
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.71 E-value=2.2e-07 Score=99.67 Aligned_cols=116 Identities=12% Similarity=0.217 Sum_probs=92.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCC-
Q 008613 74 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY-----DAKN- 147 (559)
Q Consensus 74 lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l-----dP~~- 147 (559)
...........|+|++|+..|.++|++....-. +.+...+..+.|+|.+|..+|+|++|+.+|.++|++ .|++
T Consensus 301 ~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg-~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp 379 (433)
T 3qww_A 301 VIEEFRRAKHYKSPSELLEICELSQEKMSSVFE-DSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSL 379 (433)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBC-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred HHHHHHHhhhccCHHHHHHHHHHHHHHhhCccC-hhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 334444455678999999999999997654321 224457789999999999999999999999999975 4454
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHH
Q 008613 148 --VKALYRRGQAYKDIGRLEEAVSDLSNAHEV-----SPDDGTIADVLRD 190 (559)
Q Consensus 148 --~kal~~rG~A~~~lg~~eeAi~dlekAl~l-----~P~~~~a~~~L~~ 190 (559)
+..|+++|.+|..+|+|++|+..|++|+++ -|+++.+......
T Consensus 380 ~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~ 429 (433)
T 3qww_A 380 NVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQE 429 (433)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 568999999999999999999999999986 4788876654443
No 187
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.65 E-value=2.3e-07 Score=99.37 Aligned_cols=119 Identities=13% Similarity=0.109 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCC
Q 008613 72 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY-----DAK 146 (559)
Q Consensus 72 ~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l-----dP~ 146 (559)
+.+...-..+..+|+|++|+..|.++|.+....- .+.+......+.|++.+|..+|+|++|+.+|.++|.+ .|+
T Consensus 288 ~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~l-g~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~ 366 (429)
T 3qwp_A 288 QESLKKIEELKAHWKWEQVLAMCQAIISSNSERL-PDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS 366 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCC-CTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcC-CccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC
Confidence 3444556667889999999999999998754332 1234557789999999999999999999999999975 345
Q ss_pred C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHH
Q 008613 147 N---VKALYRRGQAYKDIGRLEEAVSDLSNAHEV-----SPDDGTIADVLRDA 191 (559)
Q Consensus 147 ~---~kal~~rG~A~~~lg~~eeAi~dlekAl~l-----~P~~~~a~~~L~~a 191 (559)
+ ...|+++|.+|..+|+|++|+..|++|+++ -|+++.+...+..+
T Consensus 367 Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l 419 (429)
T 3qwp_A 367 HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLL 419 (429)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 5 568999999999999999999999999986 47787666554433
No 188
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.60 E-value=2e-07 Score=101.08 Aligned_cols=135 Identities=6% Similarity=-0.093 Sum_probs=104.4
Q ss_pred HHHHHHHHHhHHhHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHH-HHHHcCCHHH
Q 008613 55 TMRARIDAQMNYEFNA-AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMS-CYLKTKQYDE 132 (559)
Q Consensus 55 aa~~~l~~~~~~~~~~-a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~-~ylklg~y~e 132 (559)
.+...++..+...+.. ...|...|..+.+.|++++|+..|.+|++..|.... ++...+. +|...|++++
T Consensus 339 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~---------~~~~~a~~~~~~~~~~~~ 409 (530)
T 2ooe_A 339 KVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH---------VYVTAALMEYYCSKDKSV 409 (530)
T ss_dssp HHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTH---------HHHHHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchH---------HHHHHHHHHHHHcCChhH
Confidence 3444444444433332 358889999999999999999999999998666432 4444443 3557999999
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHHhh
Q 008613 133 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT----IADVLRDAKEILMKE 198 (559)
Q Consensus 133 Ai~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~----a~~~L~~a~~~l~~~ 198 (559)
|+..|+++++++|+++.+|...+..+..+|++++|...|++++...|.++. +|..........++.
T Consensus 410 A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~ 479 (530)
T 2ooe_A 410 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 479 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 999999999999999999999999999999999999999999998776543 776655555554433
No 189
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.59 E-value=3e-07 Score=100.06 Aligned_cols=112 Identities=7% Similarity=-0.043 Sum_probs=93.8
Q ss_pred HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--
Q 008613 66 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY-- 143 (559)
Q Consensus 66 ~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l-- 143 (559)
..+..+..+.++|..|...|+|++|+.+|.++|.+....-. +.+...+..++|+|.+|..+|+|++|+..|.+|+++
T Consensus 346 ~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG-~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~ 424 (490)
T 3n71_A 346 TNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYH-HNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILL 424 (490)
T ss_dssp TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 35677999999999999999999999999999987532111 123447789999999999999999999999999975
Q ss_pred ---CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008613 144 ---DAKNV---KALYRRGQAYKDIGRLEEAVSDLSNAHEVS 178 (559)
Q Consensus 144 ---dP~~~---kal~~rG~A~~~lg~~eeAi~dlekAl~l~ 178 (559)
.|+++ +.+..++.++..++.|++|...|+++.+..
T Consensus 425 ~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 425 VTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56664 567899999999999999999999886543
No 190
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.58 E-value=4.1e-07 Score=77.42 Aligned_cols=83 Identities=12% Similarity=0.032 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 150 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka 150 (559)
+..++.+|..++..++|..|+..|.+|++..+.... .......++.++|.||.++|++++|+..++++++++|++..+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~--~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEI--STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC--CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC--CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 456788999999999999999999999998654321 011245688899999999999999999999999999988888
Q ss_pred HHHHH
Q 008613 151 LYRRG 155 (559)
Q Consensus 151 l~~rG 155 (559)
+.+++
T Consensus 83 ~~n~~ 87 (104)
T 2v5f_A 83 NGNLK 87 (104)
T ss_dssp HHHHH
T ss_pred HhhHH
Confidence 77775
No 191
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.57 E-value=6.2e-07 Score=80.13 Aligned_cols=98 Identities=11% Similarity=-0.016 Sum_probs=85.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008613 77 QGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK----TKQYDECIKVGSEVLAYDAKNVKALY 152 (559)
Q Consensus 77 ~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylk----lg~y~eAi~~~~~AL~ldP~~~kal~ 152 (559)
+|..|...+.+++|+.+|.++.+. .++ .+++++|.+|.. .+++++|+.+|+++.+. .++.+++
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~---------~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~ 97 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL--NSG---------NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCL 97 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT--TCH---------HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC--CCH---------HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHH
Confidence 899999999999999999999986 333 389999999999 89999999999999987 7899999
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008613 153 RRGQAYKD----IGRLEEAVSDLSNAHEVSPDDGTIADVLR 189 (559)
Q Consensus 153 ~rG~A~~~----lg~~eeAi~dlekAl~l~P~~~~a~~~L~ 189 (559)
++|.+|.. .+++++|+.+|+++.+. .++.+...|+
T Consensus 98 ~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~ 136 (138)
T 1klx_A 98 ILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSEDACGILN 136 (138)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC-
T ss_pred HHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHh
Confidence 99999999 99999999999999987 4555554443
No 192
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.54 E-value=7.2e-07 Score=75.87 Aligned_cols=84 Identities=15% Similarity=0.057 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008613 114 LACSLNSMSCYLKTKQYDECIKVGSEVLAYD-------AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIAD 186 (559)
Q Consensus 114 ~~~~~nlA~~ylklg~y~eAi~~~~~AL~ld-------P~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~ 186 (559)
...++.+|..+++.++|..|+..|.+|++.. +..+.++..+|.+|..+|++++|+..++++++++|+++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 3467899999999999999999999999863 346789999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHh
Q 008613 187 VLRDAKEILMK 197 (559)
Q Consensus 187 ~L~~a~~~l~~ 197 (559)
++..++..+..
T Consensus 85 n~~~~~~~~~~ 95 (104)
T 2v5f_A 85 NLKYFEYIMAK 95 (104)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHh
Confidence 88877666543
No 193
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.52 E-value=4.3e-07 Score=76.31 Aligned_cols=68 Identities=13% Similarity=-0.019 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008613 115 ACSLNSMSCYLKTKQ---YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG 182 (559)
Q Consensus 115 ~~~~nlA~~ylklg~---y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~ 182 (559)
.+++.+|.+++..++ .++|...+.++|+++|+++++++.+|.+++..|+|++|+..|++++..+|.++
T Consensus 7 ~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 7 TQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp HHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 388899999976665 79999999999999999999999999999999999999999999999999853
No 194
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.52 E-value=6.8e-08 Score=97.67 Aligned_cols=130 Identities=15% Similarity=0.074 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-C-H
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK-N-V 148 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~-~-~ 148 (559)
-+.....+..+...|+|++|++.|..++...|.+ . +++.+|.+|++.++|++|+..|++++...+. . .
T Consensus 102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~---------~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~ 171 (282)
T 4f3v_A 102 LAITMGFAACEAAQGNYADAMEALEAAPVAGSEH---------L-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAG 171 (282)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHH---------H-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCch---------H-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHH
Confidence 3445568899999999999999999887654332 3 7899999999999999999999988876422 2 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHHHhhcCCCCCccchhh
Q 008613 149 KALYRRGQAYKDIGRLEEAVSDLSNAHEVS--PD-DGTIADVLRDAKEILMKEDGHHGPRGLLIE 210 (559)
Q Consensus 149 kal~~rG~A~~~lg~~eeAi~dlekAl~l~--P~-~~~a~~~L~~a~~~l~~~~~~~~~~~~~i~ 210 (559)
.+++.+|.++..+|++++|+.+|++++... |. ..+++..++.+...+++..++...+++++.
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 589999999999999999999999998654 55 567889999999999988877766666653
No 195
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.47 E-value=5e-07 Score=92.44 Aligned_cols=132 Identities=9% Similarity=-0.017 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN--- 147 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~--- 147 (559)
+..+...|..++..|+|++|+.+|.+++...|... ......+++++|.+|...|+|++|+..+.+++.+.|..
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 89 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGW----FYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW 89 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTC----HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCc----hhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH
Confidence 56677889999999999999999999999876432 22345688999999999999999999999999986643
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHHHhhcCCCCCcc
Q 008613 148 ---VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP--------DDGTIADVLRDAKEILMKEDGHHGPRG 206 (559)
Q Consensus 148 ---~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P--------~~~~a~~~L~~a~~~l~~~~~~~~~~~ 206 (559)
..+++.+|.+|...|++++|+..|++++.+.+ ....++..++.+....++...+...++
T Consensus 90 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 159 (373)
T 1hz4_A 90 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASAR 159 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 34588999999999999999999999999752 234456667777776665554433333
No 196
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.43 E-value=3.5e-06 Score=87.54 Aligned_cols=105 Identities=10% Similarity=0.076 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CC
Q 008613 72 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY------DA 145 (559)
Q Consensus 72 ~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l------dP 145 (559)
..+...|.++...|++++|+.+|.+++...+.... ..+...++.++|.+|...|+|++|+..+.+++.. .+
T Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 172 (434)
T 4b4t_Q 96 VLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKR---VFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP 172 (434)
T ss_dssp HHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSC---CSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCc---cHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence 34455677777778888888888888776554332 2346778999999999999999999999999876 33
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008613 146 KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP 179 (559)
Q Consensus 146 ~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P 179 (559)
..+.++..++.+|..+|+|++|...|++++.+.+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 206 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN 206 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence 4478999999999999999999999999998754
No 197
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.40 E-value=5e-06 Score=89.08 Aligned_cols=110 Identities=15% Similarity=0.005 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q 008613 70 AAKMLKKQGNELYS----EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK----TKQYDECIKVGSEVL 141 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k----~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylk----lg~y~eAi~~~~~AL 141 (559)
.+..+..+|..|+. .+++++|+.+|.++++. .++ .+++++|.+|.. .+++++|+..|++++
T Consensus 74 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~---------~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~ 142 (490)
T 2xm6_A 74 YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLP---------QAQQNLGVMYHEGNGVKVDKAESVKWFRLAA 142 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH---------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCH---------HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 35677778888888 88888888888888764 222 377788888887 778888888888887
Q ss_pred HcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008613 142 AYDAKNVKALYRRGQAYKD----IGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI 194 (559)
Q Consensus 142 ~ldP~~~kal~~rG~A~~~----lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~ 194 (559)
+. +++.+++.+|.+|.. .+++++|+.+|+++++. +++.++..|+.+...
T Consensus 143 ~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~ 195 (490)
T 2xm6_A 143 EQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSR 195 (490)
T ss_dssp HT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred HC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhc
Confidence 54 577888888888877 77888888888888765 566777777766554
No 198
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.40 E-value=6.2e-06 Score=88.33 Aligned_cols=108 Identities=14% Similarity=0.057 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHc
Q 008613 71 AKMLKKQGNELYSEG---RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK----TKQYDECIKVGSEVLAY 143 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g---~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylk----lg~y~eAi~~~~~AL~l 143 (559)
+..+..+|..|+..| ++++|+.+|+++++. .++ .+++++|.+|.. .+++++|+..|+++++.
T Consensus 328 ~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~---------~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~ 396 (490)
T 2xm6_A 328 ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEK---------AAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ 396 (490)
T ss_dssp HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCH---------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCH---------HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC
Confidence 566788999998866 899999999999986 332 389999999999 89999999999999976
Q ss_pred CCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHH
Q 008613 144 DAKNVKALYRRGQAYKD----IGRLEEAVSDLSNAHEVSPD---DGTIADVLRDA 191 (559)
Q Consensus 144 dP~~~kal~~rG~A~~~----lg~~eeAi~dlekAl~l~P~---~~~a~~~L~~a 191 (559)
.++.+++++|.+|.. .+++++|+.+|++++++.|+ ++.+...|+.+
T Consensus 397 --~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~ 449 (490)
T 2xm6_A 397 --GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKL 449 (490)
T ss_dssp --TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTS
T ss_pred --CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhc
Confidence 479999999999998 89999999999999999854 66666666554
No 199
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.36 E-value=5.6e-06 Score=88.50 Aligned_cols=120 Identities=13% Similarity=0.037 Sum_probs=72.6
Q ss_pred HHHHHHHHhHHhHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHH-H--HHcC
Q 008613 56 MRARIDAQMNYEFNAAKMLKKQGNELYSE----GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSC-Y--LKTK 128 (559)
Q Consensus 56 a~~~l~~~~~~~~~~a~~lk~~Gn~~~k~----g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~-y--lklg 128 (559)
+...+..........+..+..+|.+|..- +++++|+.+|.++. +.++. +++++|.+ | ...+
T Consensus 198 A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~---------a~~~Lg~~~~~~~~~~ 265 (452)
T 3e4b_A 198 LLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPA---------SWVSLAQLLYDFPELG 265 (452)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTH---------HHHHHHHHHHHSGGGC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHH---------HHHHHHHHHHhCCCCC
Confidence 33333333333333344456666666544 56677777777665 45443 66677776 3 3566
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008613 129 QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIG-----RLEEAVSDLSNAHEVSPDDGTIADVLRDAKE 193 (559)
Q Consensus 129 ~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg-----~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~ 193 (559)
++++|+.+|+++++. +++.+++++|.+|. .| ++++|+.+|++++ ++++.+...|+.+..
T Consensus 266 d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~ 329 (452)
T 3e4b_A 266 DVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYR 329 (452)
T ss_dssp CHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHH
Confidence 777777777777643 36777777777776 44 6777777777766 666666666665543
No 200
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.33 E-value=1.2e-06 Score=80.25 Aligned_cols=99 Identities=8% Similarity=-0.020 Sum_probs=76.7
Q ss_pred cHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhc-CCCCCchhhhhHHHHHHHHHHHHH
Q 008613 50 PEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEG---RFSNALQKYLLAKKNL-QGIHSSEGRTLLLACSLNSMSCYL 125 (559)
Q Consensus 50 pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g---~y~eAi~~Y~kAL~l~-p~~~~~e~~~l~~~~~~nlA~~yl 125 (559)
++++..+..+.+..++......+..++.|.++.+.+ ++.++|..+.+.++.. |.. ...|+|++|..|+
T Consensus 11 ~~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~--------~rd~lY~LAv~~~ 82 (152)
T 1pc2_A 11 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEE--------QRDYVFYLAVGNY 82 (152)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHH--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccc--------hHHHHHHHHHHHH
Confidence 444444444444444433345788999999999988 7779999999999976 311 3459999999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008613 126 KTKQYDECIKVGSEVLAYDAKNVKALYRRGQ 156 (559)
Q Consensus 126 klg~y~eAi~~~~~AL~ldP~~~kal~~rG~ 156 (559)
++++|++|+++|+++|+++|+|..+...+-.
T Consensus 83 kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ 113 (152)
T 1pc2_A 83 RLKEYEKALKYVRGLLQTEPQNNQAKELERL 113 (152)
T ss_dssp HTSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 9999999999999999999999887655443
No 201
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.27 E-value=2.5e-05 Score=93.10 Aligned_cols=103 Identities=14% Similarity=0.159 Sum_probs=74.4
Q ss_pred HHHHHHhHH--hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHH
Q 008613 58 ARIDAQMNY--EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIK 135 (559)
Q Consensus 58 ~~l~~~~~~--~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~ 135 (559)
..+++..++ .+.....|...|..+.+.|+|.+||+.|.++ ++++ .|.+++.|+.++|+|++|++
T Consensus 1090 ~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~s---------ay~eVa~~~~~lGkyEEAIe 1155 (1630)
T 1xi4_A 1090 GNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPS---------SYMEVVQAANTSGNWEELVK 1155 (1630)
T ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChH---------HHHHHHHHHHHcCCHHHHHH
Confidence 344444443 2456788899999999999999999999876 3433 78888888888888888888
Q ss_pred HHHHHHHcCCC---------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008613 136 VGSEVLAYDAK---------------------------NVKALYRRGQAYKDIGRLEEAVSDLSNA 174 (559)
Q Consensus 136 ~~~~AL~ldP~---------------------------~~kal~~rG~A~~~lg~~eeAi~dlekA 174 (559)
+|..+++..++ +...|++.|..+...|+|++|+..|.++
T Consensus 1156 yL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A 1156 YLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 1221 (1630)
T ss_pred HHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence 88777655533 2234566777777777777777777665
No 202
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.25 E-value=6.2e-06 Score=73.13 Aligned_cols=102 Identities=13% Similarity=0.147 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHcC-C-CCHHHHHHHHHHHHHc
Q 008613 87 FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE---CIKVGSEVLAYD-A-KNVKALYRRGQAYKDI 161 (559)
Q Consensus 87 y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~e---Ai~~~~~AL~ld-P-~~~kal~~rG~A~~~l 161 (559)
...+.+.|.+.+...+.. ..+.+++|.|+.+..+..+ +|..++.+++.+ | ....++|.+|.+|+++
T Consensus 17 l~~~~~~y~~e~~~~~~s---------~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~ykl 87 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVS---------KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRL 87 (126)
T ss_dssp HHHHHHHHHHHHHHSCCC---------HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccCCCc---------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Confidence 455667788777754433 3488999999999887776 999999999887 6 5779999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 008613 162 GRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 197 (559)
Q Consensus 162 g~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~ 197 (559)
|+|++|+..++.+|+++|+|..+......+.+++.+
T Consensus 88 g~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~i~k 123 (126)
T 1nzn_A 88 KEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK 123 (126)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999988888887754
No 203
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.24 E-value=8.3e-06 Score=84.67 Aligned_cols=133 Identities=5% Similarity=-0.075 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA----- 145 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP----- 145 (559)
...+..+|..|+..|+|++|+++|.+++.+.+.... ......++.+++.++...+++++|+..|.+++.+.+
T Consensus 55 ~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 131 (434)
T 4b4t_Q 55 ETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK---SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRV 131 (434)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH---HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCcc
Confidence 556888999999999999999999999998877643 222345677889999999999999999999997633
Q ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHHHhhcCCCCCcc
Q 008613 146 -KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP------DDGTIADVLRDAKEILMKEDGHHGPRG 206 (559)
Q Consensus 146 -~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P------~~~~a~~~L~~a~~~l~~~~~~~~~~~ 206 (559)
...+++.++|.+|...|+|++|+..+++++.... ....++..++.+...+++..++...+.
T Consensus 132 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 199 (434)
T 4b4t_Q 132 FLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLT 199 (434)
T ss_dssp SSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 3478999999999999999999999999988632 224566666777777666555443333
No 204
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.19 E-value=1.4e-05 Score=81.73 Aligned_cols=106 Identities=8% Similarity=-0.035 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----
Q 008613 70 AAKMLKKQGNELYSEG--RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY---- 143 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g--~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l---- 143 (559)
........+.+.+..| +|.+|+..|.++....|... ...+++| |++++|+|++|...++.++++
T Consensus 175 ~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~-------~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~ 244 (310)
T 3mv2_B 175 EMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWK-------TQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSV 244 (310)
T ss_dssp HHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHH-------HHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHT
T ss_pred HHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcc-------cHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccc
Confidence 3445555665566666 99999999999887655410 0124555 999999999999999988876
Q ss_pred ------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008613 144 ------DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADV 187 (559)
Q Consensus 144 ------dP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~ 187 (559)
+|+++.++.++..+...+|+ +|.+.++++..++|+++-+...
T Consensus 245 ~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~ 292 (310)
T 3mv2_B 245 EQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHH 292 (310)
T ss_dssp TTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHH
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHH
Confidence 58999999999999999998 9999999999999999876653
No 205
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.18 E-value=6.2e-05 Score=89.75 Aligned_cols=173 Identities=17% Similarity=0.123 Sum_probs=110.3
Q ss_pred hcCCHHHHHHHHHHh-hCCChHHHHHHHHHHHccCcH---HHHHHHH-HHHHHhHHhHHHHHHHH---------HHHHHH
Q 008613 16 KNMRPEDLKCAAEQL-THTPPEEVAEIGEKLANASPE---EIATMRA-RIDAQMNYEFNAAKMLK---------KQGNEL 81 (559)
Q Consensus 16 k~m~pedl~~a~e~l-~~~~pee~~~~~~~~~~~~pe---e~~aa~~-~l~~~~~~~~~~a~~lk---------~~Gn~~ 81 (559)
....||++-.+.+.. ....|.+...+.+++.- .+. +...+.+ -+...++........+. +.|..+
T Consensus 981 e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl-~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Ia 1059 (1630)
T 1xi4_A 981 ETQDPEEVSVTVKAFMTADLPNELIELLEKIVL-DNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIA 1059 (1630)
T ss_pred cccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHc-CCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHH
Confidence 556677766555443 45567777777777662 233 1111111 11112222222333333 358899
Q ss_pred HHcCCHHHHHHHHHHHHHhcCCCC-------C-ch-----hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008613 82 YSEGRFSNALQKYLLAKKNLQGIH-------S-SE-----GRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV 148 (559)
Q Consensus 82 ~k~g~y~eAi~~Y~kAL~l~p~~~-------~-~e-----~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ 148 (559)
...|.|++|+..|+++........ . .+ .+-....+|+++|.++...|+|++||..|.++ +++
T Consensus 1060 i~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~ 1134 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDP 1134 (1630)
T ss_pred HhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CCh
Confidence 999999999999887642211100 0 00 01113468999999999999999999999776 899
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008613 149 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 195 (559)
Q Consensus 149 kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l 195 (559)
.+|++.+.++..+|+|++|++.|..+.+..++. .+...++.+..++
T Consensus 1135 say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~-~Idt~LafaYAKl 1180 (1630)
T 1xi4_A 1135 SSYMEVVQAANTSGNWEELVKYLQMARKKARES-YVETELIFALAKT 1180 (1630)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc-cccHHHHHHHHhh
Confidence 999999999999999999999999999888442 2233344444333
No 206
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.17 E-value=7e-06 Score=87.76 Aligned_cols=108 Identities=8% Similarity=-0.007 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHcC---CHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcC
Q 008613 72 KMLKKQGNELYSEG---RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT----KQYDECIKVGSEVLAYD 144 (559)
Q Consensus 72 ~~lk~~Gn~~~k~g---~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylkl----g~y~eAi~~~~~AL~ld 144 (559)
..+..+|.+|...| ++.+|+..|.++++..+... ..++++|.+|... +++++|+..|++++
T Consensus 177 ~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a---------~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa--- 244 (452)
T 3e4b_A 177 ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTA---------QRVDSVARVLGDATLGTPDEKTAQALLEKIA--- 244 (452)
T ss_dssp THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCH---------HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---
T ss_pred HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHH---------HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---
Confidence 46788999999999 99999999999999877663 2669999999877 79999999999998
Q ss_pred CCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008613 145 AKNVKALYRRGQA-Y--KDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE 193 (559)
Q Consensus 145 P~~~kal~~rG~A-~--~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~ 193 (559)
|+++.+++++|.+ | ...+++++|+.+|+++++. +++.+...|+.+..
T Consensus 245 ~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~ 294 (452)
T 3e4b_A 245 PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY 294 (452)
T ss_dssp GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence 9999999999999 4 5789999999999999865 58889999998876
No 207
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.16 E-value=3.9e-06 Score=74.89 Aligned_cols=93 Identities=14% Similarity=0.002 Sum_probs=82.7
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----
Q 008613 85 GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKD---- 160 (559)
Q Consensus 85 g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~---- 160 (559)
+++++|+..|.++.+.. ++. +. +|.+|...+.+++|+..|+++.+. .++.+++++|.+|..
T Consensus 9 ~d~~~A~~~~~~aa~~g--~~~---------a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~ 73 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN--EMF---------GC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYV 73 (138)
T ss_dssp HHHHHHHHHHHHHHHTT--CTT---------HH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSS
T ss_pred cCHHHHHHHHHHHHcCC--CHh---------hh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCC
Confidence 56899999999999875 332 44 999999999999999999999987 789999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008613 161 IGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI 194 (559)
Q Consensus 161 lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~ 194 (559)
.+++++|+.+|+++.+. .++.+...|+.+...
T Consensus 74 ~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~ 105 (138)
T 1klx_A 74 KKDLRKAAQYYSKACGL--NDQDGCLILGYKQYA 105 (138)
T ss_dssp CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHC
Confidence 89999999999999987 778888899888766
No 208
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.03 E-value=3.8e-05 Score=80.19 Aligned_cols=68 Identities=16% Similarity=0.102 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008613 115 ACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT 183 (559)
Q Consensus 115 ~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~ 183 (559)
.+|.-++.++...|++++|+..+++++.++| ++-+|..+|.++...|++++|++.|++|+.++|..+.
T Consensus 278 ~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 278 IIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 4777788888888999999999999999997 4788899999999999999999999999999998753
No 209
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.99 E-value=1.2e-05 Score=85.95 Aligned_cols=105 Identities=16% Similarity=0.132 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------
Q 008613 72 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA------ 145 (559)
Q Consensus 72 ~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP------ 145 (559)
..+...|+.++..|+|++|+.+|.++ . -|.+++.|+.++|+|++|++.|.++. +|
T Consensus 123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~---------n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v 183 (449)
T 1b89_A 123 AHIQQVGDRCYDEKMYDAAKLLYNNV--------S---------NFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEV 183 (449)
T ss_dssp --------------CTTTHHHHHHHT--------T---------CHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh--------h---------hHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHH
Confidence 48888999999999999999999876 1 47789999999999999999999882 33
Q ss_pred ---------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008613 146 ---------------------KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 195 (559)
Q Consensus 146 ---------------------~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l 195 (559)
.++.-+..+...|...|+|++|+..|++++.+++.+..++..|+.+..+.
T Consensus 184 ~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky 254 (449)
T 1b89_A 184 CFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 254 (449)
T ss_dssp HHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred HHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc
Confidence 12222333446788999999999999999999999999999888775444
No 210
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.95 E-value=2.5e-05 Score=65.40 Aligned_cols=68 Identities=13% Similarity=-0.015 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008613 71 AKMLKKQGNELYSEGR---FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN 147 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~---y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~ 147 (559)
+..+...|.+++..++ .++|..+|.++|.++|.++. +++.+|..+++.|+|++||..++++++.+|..
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~r---------A~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEA---------ALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 7788889999986666 79999999999999999965 89999999999999999999999999999984
No 211
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.94 E-value=1.7e-05 Score=79.98 Aligned_cols=87 Identities=10% Similarity=-0.055 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHH
Q 008613 87 FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT-----KQYDECIKVGSEVLAYDAKN-VKALYRRGQAYKD 160 (559)
Q Consensus 87 y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylkl-----g~y~eAi~~~~~AL~ldP~~-~kal~~rG~A~~~ 160 (559)
..+|...+.+||+++|... ...+|.-+|..|.+. |+.++|..+|++||+++|+. ...++..|..|+.
T Consensus 179 l~~A~a~lerAleLDP~~~-------~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~ 251 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQ-------EGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCI 251 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHH-------HHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhCCCcc-------cCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH
Confidence 4778899999999988842 245999999999995 99999999999999999975 9999999999988
Q ss_pred c-CCHHHHHHHHHHHHHhCCC
Q 008613 161 I-GRLEEAVSDLSNAHEVSPD 180 (559)
Q Consensus 161 l-g~~eeAi~dlekAl~l~P~ 180 (559)
. +++++|...+++++..+|+
T Consensus 252 ~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 252 PLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp TTTCHHHHHHHHHHHHHCCGG
T ss_pred hcCCHHHHHHHHHHHHcCCCC
Confidence 5 9999999999999998876
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.79 E-value=0.00012 Score=78.18 Aligned_cols=93 Identities=8% Similarity=-0.032 Sum_probs=72.7
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---
Q 008613 67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY--- 143 (559)
Q Consensus 67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l--- 143 (559)
.+..+..+.++|..|...|+|++|+.+|.++|.+....-. +.+...+..++|+|.+|..+|+|++|+..|.+|+++
T Consensus 325 h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg-~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~ 403 (429)
T 3qwp_A 325 NIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFP-GSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRV 403 (429)
T ss_dssp SHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSC-SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 5667899999999999999999999999999977532110 123447889999999999999999999999999975
Q ss_pred --CCCCHH---HHHHHHHHHHH
Q 008613 144 --DAKNVK---ALYRRGQAYKD 160 (559)
Q Consensus 144 --dP~~~k---al~~rG~A~~~ 160 (559)
.|+++. .+.+++.++..
T Consensus 404 ~lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 404 THGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp HTCTTSHHHHHHHHHHHHHHHH
T ss_pred hcCCCChHHHHHHHHHHHHHHH
Confidence 566653 44555555543
No 213
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.79 E-value=0.00015 Score=64.57 Aligned_cols=85 Identities=12% Similarity=0.139 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008613 114 LACSLNSMSCYLKTKQ---YDECIKVGSEVLAYDAK-NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLR 189 (559)
Q Consensus 114 ~~~~~nlA~~ylklg~---y~eAi~~~~~AL~ldP~-~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~ 189 (559)
..+.++.|.|+.+..+ ..++|..++..++.+|. ...++|.+|.++.++|+|++|..+++.+|+++|+|..+.....
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~ 119 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS 119 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 4578899999998875 45799999999999995 5789999999999999999999999999999999999999988
Q ss_pred HHHHHHHhh
Q 008613 190 DAKEILMKE 198 (559)
Q Consensus 190 ~a~~~l~~~ 198 (559)
.+.+++.+.
T Consensus 120 ~Ie~ki~kd 128 (134)
T 3o48_A 120 MVEDKIQKE 128 (134)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 888888653
No 214
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.79 E-value=0.00023 Score=72.69 Aligned_cols=136 Identities=9% Similarity=-0.108 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHhHHh--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHH--HHHcC
Q 008613 53 IATMRARIDAQMNYE--FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSC--YLKTK 128 (559)
Q Consensus 53 ~~aa~~~l~~~~~~~--~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~--ylklg 128 (559)
+..+..-++..+... ....+.+...+.++++.|+++.|.+.+.+..+..|+.... ...++.+++.+ .+..|
T Consensus 116 ~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~-----~d~~l~~Laea~v~l~~g 190 (310)
T 3mv2_B 116 LDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSG-----DNEMILNLAESYIKFATN 190 (310)
T ss_dssp HHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHH-----HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccccc-----chHHHHHHHHHHHHHHhC
Confidence 334444444433333 2567778888999999999999999999998886620000 01144555544 55556
Q ss_pred --CHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHH
Q 008613 129 --QYDECIKVGSEVLAYDAK--NVKALYRRGQAYKDIGRLEEAVSDLSNAHEV----------SPDDGTIADVLRDAKEI 194 (559)
Q Consensus 129 --~y~eAi~~~~~AL~ldP~--~~kal~~rG~A~~~lg~~eeAi~dlekAl~l----------~P~~~~a~~~L~~a~~~ 194 (559)
++.+|+..|++++...|+ ....+++ ++..+|+|++|..+++..+++ +|+++.+..++..+...
T Consensus 191 ~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~ 267 (310)
T 3mv2_B 191 KETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALM 267 (310)
T ss_dssp CSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHH
Confidence 999999999999988887 3445555 899999999999999988877 48898888766656555
Q ss_pred HH
Q 008613 195 LM 196 (559)
Q Consensus 195 l~ 196 (559)
++
T Consensus 268 lg 269 (310)
T 3mv2_B 268 QG 269 (310)
T ss_dssp TT
T ss_pred hC
Confidence 54
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.75 E-value=0.00012 Score=78.25 Aligned_cols=84 Identities=10% Similarity=-0.089 Sum_probs=68.5
Q ss_pred HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--
Q 008613 66 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY-- 143 (559)
Q Consensus 66 ~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l-- 143 (559)
..+..+..+.++|.+|...|+|++|+.+|.++|.+....-. +.+...+..|+|+|.+|..+|+|++|+..|.+|+++
T Consensus 335 ~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG-~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~ 413 (433)
T 3qww_A 335 SNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYP-VYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIME 413 (433)
T ss_dssp TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC-SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 45677999999999999999999999999999977532110 123347789999999999999999999999999975
Q ss_pred ---CCCCHHH
Q 008613 144 ---DAKNVKA 150 (559)
Q Consensus 144 ---dP~~~ka 150 (559)
.|+++..
T Consensus 414 ~~lG~~Hp~~ 423 (433)
T 3qww_A 414 VAHGKDHPYI 423 (433)
T ss_dssp HHTCTTCHHH
T ss_pred HHcCCCChHH
Confidence 5666543
No 216
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.70 E-value=0.00041 Score=64.13 Aligned_cols=119 Identities=12% Similarity=0.087 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCC-
Q 008613 72 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD---AKN- 147 (559)
Q Consensus 72 ~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ld---P~~- 147 (559)
-.+++....++..+.|+.|+-++..++.+...+++.-.......+++.+|.+++..++|..|+..|++||.+. +++
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3467788899999999999999999888765554322244566688999999999999999999999997541 111
Q ss_pred ---------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008613 148 ---------------------VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA 191 (559)
Q Consensus 148 ---------------------~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a 191 (559)
.+..|+.+.||..++++++|+..++..-.. -..+.+.-.|+.+
T Consensus 101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k-~Rt~kvnm~LakL 164 (167)
T 3ffl_A 101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR-QRTPKINMLLANL 164 (167)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG-GCCHHHHHHHHHH
T ss_pred CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch-hcCHHHHHHHHHH
Confidence 268899999999999999999998754221 1345555555543
No 217
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.66 E-value=0.00044 Score=62.30 Aligned_cols=85 Identities=12% Similarity=0.139 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008613 114 LACSLNSMSCYLKTKQ---YDECIKVGSEVLAYDAK-NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLR 189 (559)
Q Consensus 114 ~~~~~nlA~~ylklg~---y~eAi~~~~~AL~ldP~-~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~ 189 (559)
..+.++.|.|+.+..+ ..++|..++..++.+|. ...++|.+|.+++++|+|++|..+++.+|+++|+|..+.....
T Consensus 39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~ 118 (144)
T 1y8m_A 39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS 118 (144)
T ss_dssp HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 4488899999998875 45799999999998885 5789999999999999999999999999999999999999888
Q ss_pred HHHHHHHhh
Q 008613 190 DAKEILMKE 198 (559)
Q Consensus 190 ~a~~~l~~~ 198 (559)
.+.+++.+.
T Consensus 119 ~Ie~~i~kd 127 (144)
T 1y8m_A 119 MVEDKIQKE 127 (144)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 888888654
No 218
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.65 E-value=9.8e-05 Score=77.08 Aligned_cols=128 Identities=6% Similarity=-0.103 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHcC---CHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCH-------HHHHH-HHH--
Q 008613 72 KMLKKQGNELYSEG---RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY-------DECIK-VGS-- 138 (559)
Q Consensus 72 ~~lk~~Gn~~~k~g---~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y-------~eAi~-~~~-- 138 (559)
-.++.+|..++.++ .+.+|+.+|.+|++++|.++. +|..++.||.-...+ ..++. .+.
T Consensus 197 ydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~---------A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 197 LTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTY---------ARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp HHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 33444556555543 358999999999999999854 677777777532211 11222 111
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613 139 EVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI 209 (559)
Q Consensus 139 ~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i 209 (559)
.++.++|..+.+|..++.++...|++++|+..+++|+.++|+ ...+..++.+....++.+.+...+.+++
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~Al 337 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAF 337 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 233678999999999999999999999999999999999975 5667788888888777665554444444
No 219
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.60 E-value=0.00026 Score=62.62 Aligned_cols=101 Identities=8% Similarity=-0.041 Sum_probs=75.9
Q ss_pred cHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHH
Q 008613 50 PEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSN---ALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK 126 (559)
Q Consensus 50 pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~e---Ai~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylk 126 (559)
++++..+..+.+..+.......+..++.+.++.+..+..+ +|..+...+... .| ...-.|+|.+|..|++
T Consensus 14 ~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~--~p-----~~~Rd~lY~LAvg~yk 86 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG--SK-----EEQRDYVFYLAVGNYR 86 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS--CH-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--Cc-----chHHHHHHHHHHHHHH
Confidence 4444444444444444333457888899999999888877 899998877743 11 1244599999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008613 127 TKQYDECIKVGSEVLAYDAKNVKALYRRGQA 157 (559)
Q Consensus 127 lg~y~eAi~~~~~AL~ldP~~~kal~~rG~A 157 (559)
+|+|.+|+++++.+|+++|+|..+...+..+
T Consensus 87 lg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 87 LKEYEKALKYVRGLLQTEPQNNQAKELERLI 117 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999999999998886655444
No 220
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.54 E-value=0.00086 Score=59.68 Aligned_cols=101 Identities=8% Similarity=-0.001 Sum_probs=74.9
Q ss_pred CcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHH
Q 008613 49 SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRF---SNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYL 125 (559)
Q Consensus 49 ~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y---~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~yl 125 (559)
+++++..+.++.+.+. .....++..++.+.++.+..+. .++|..+...++..|.. .-.|+|.+|..|+
T Consensus 19 ~~eeL~~l~~qy~~E~-~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~--------~Rd~LYyLAvg~y 89 (134)
T 3o48_A 19 YPQQLEILRQQVVSEG-GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR--------RRECLYYLTIGCY 89 (134)
T ss_dssp CHHHHHHHHHHHHHTT-GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG--------HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHh-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcch--------hHHHHHHHHHHHH
Confidence 3444444444454443 2223367788888888887765 46899999988865432 3459999999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008613 126 KTKQYDECIKVGSEVLAYDAKNVKALYRRGQAY 158 (559)
Q Consensus 126 klg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~ 158 (559)
++|+|++|.++++.+|+++|+|..+...+..+-
T Consensus 90 klgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~Ie 122 (134)
T 3o48_A 90 KLGEYSMAKRYVDTLFEHERNNKQVGALKSMVE 122 (134)
T ss_dssp HHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 999999999999999999999988766555443
No 221
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.43 E-value=0.0014 Score=58.97 Aligned_cols=99 Identities=8% Similarity=0.032 Sum_probs=73.2
Q ss_pred cHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHH
Q 008613 50 PEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFS---NALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK 126 (559)
Q Consensus 50 pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~---eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylk 126 (559)
|+++..+..+.+.+.. .....+..++.+.++.+..+.. ++|..+...+...|.. .-.|+|.+|..|++
T Consensus 19 ~eeL~~lr~qY~~E~~-~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~--------~RdcLYyLAvg~yk 89 (144)
T 1y8m_A 19 PQQLEILRQQVVSEGG-PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR--------RRECLYYLTIGCYK 89 (144)
T ss_dssp HHHHHHHHHHHHHTTS-TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCST--------HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcc-CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccc--------hhHHHHHHHHHHHH
Confidence 4444444444443311 1234777888889999888765 6899999988865543 34599999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008613 127 TKQYDECIKVGSEVLAYDAKNVKALYRRGQA 157 (559)
Q Consensus 127 lg~y~eAi~~~~~AL~ldP~~~kal~~rG~A 157 (559)
+|+|.+|.++++.+|+++|+|..+...+..+
T Consensus 90 l~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~I 120 (144)
T 1y8m_A 90 LGEYSMAKRYVDTLFEHERNNKQVGALKSMV 120 (144)
T ss_dssp TTCHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 9999999999999999999998876554443
No 222
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=97.19 E-value=0.0061 Score=63.91 Aligned_cols=107 Identities=12% Similarity=0.001 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCc-------------hhhhhHHHHHHHHHHHHHHcCCHHHHHHH
Q 008613 70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSS-------------EGRTLLLACSLNSMSCYLKTKQYDECIKV 136 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~-------------e~~~l~~~~~~nlA~~ylklg~y~eAi~~ 136 (559)
..+.+...|......|+..+|+..|.+|+.+.....-. ...+.+..++..++.+++..|++.+++..
T Consensus 114 ~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~ 193 (388)
T 2ff4_A 114 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE 193 (388)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34566677777788899999999999999987543211 23455667778889999999999999999
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008613 137 GSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHE 176 (559)
Q Consensus 137 ~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~ 176 (559)
+.+++..+|-+..+|..+-.+|...|+..+|+..|+++..
T Consensus 194 l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 194 LEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988755
No 223
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=96.90 E-value=0.00055 Score=73.19 Aligned_cols=125 Identities=10% Similarity=0.088 Sum_probs=95.1
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHH-----------------------HHHHHHH
Q 008613 67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLAC-----------------------SLNSMSC 123 (559)
Q Consensus 67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~-----------------------~~nlA~~ 123 (559)
....+..+..++.++++.|+|++|++.|.++.. + . .......+ +..+..+
T Consensus 144 ~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA~~--~---~--~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~ 216 (449)
T 1b89_A 144 LYNNVSNFGRLASTLVHLGEYQAAVDGARKANS--T---R--TWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINY 216 (449)
T ss_dssp HHHHTTCHHHHHHHHHTTTCHHHHHHHHHHHTC--H---H--HHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHhccHHHHHHHHHHcCC--c---h--hHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHH
Confidence 333567788999999999999999999999932 1 0 00001111 2235578
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHHH
Q 008613 124 YLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYK--DIGRLEEAVSDLSNAHEVSP-----DDGTIADVLRDAKEILM 196 (559)
Q Consensus 124 ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~--~lg~~eeAi~dlekAl~l~P-----~~~~a~~~L~~a~~~l~ 196 (559)
|.+.|+|++|+..+++++.+++.+...+..+|.+|. ..++..++++.|...+.+.| .+...|..+..+.....
T Consensus 217 Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~ 296 (449)
T 1b89_A 217 YQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYE 296 (449)
T ss_dssp HHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999998885 55678889998887777776 66677887777776654
Q ss_pred hh
Q 008613 197 KE 198 (559)
Q Consensus 197 ~~ 198 (559)
+.
T Consensus 297 e~ 298 (449)
T 1b89_A 297 EY 298 (449)
T ss_dssp CH
T ss_pred hH
Confidence 43
No 224
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.90 E-value=0.012 Score=53.52 Aligned_cols=112 Identities=11% Similarity=-0.087 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHcCCH------HHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 008613 71 AKMLKKQGNELYSEGRF------SNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD 144 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y------~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ld 144 (559)
.+.|...-..+-+.|+. ++-++.|.+|+...|... ....+-++.+|.+.|.. ...++.++|.+.|..++.+.
T Consensus 13 yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k-~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 13 PEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDK-YGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp HHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGG-GTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccc-cccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHh
Confidence 55666666666666877 888999999999988764 44556677888888855 67899999999999999998
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008613 145 AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI 184 (559)
Q Consensus 145 P~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a 184 (559)
...++.|...|.--...|+...|.+.+.+++.+.|...+.
T Consensus 91 KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 91 KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 8889999999998999999999999999999999987553
No 225
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.85 E-value=0.013 Score=66.09 Aligned_cols=119 Identities=8% Similarity=-0.078 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCH
Q 008613 70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK-QYDECIKVGSEVLAYDAKNV 148 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg-~y~eAi~~~~~AL~ldP~~~ 148 (559)
....|....+...+.+..+.|...|.+|++..|.... .+|...+....+.+ +++.|...|+.+|+..|+++
T Consensus 433 ~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~--------~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~ 504 (679)
T 4e6h_A 433 LTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTP--------DIYLENAYIEYHISKDTKTACKVLELGLKYFATDG 504 (679)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCT--------HHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCh--------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCch
Confidence 3456777888888889999999999999987332221 25666666666665 59999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHH
Q 008613 149 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD---DGTIADVLRDAKEILM 196 (559)
Q Consensus 149 kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~---~~~a~~~L~~a~~~l~ 196 (559)
..+...+......|+.+.|...|++++...|+ ...++......+...+
T Consensus 505 ~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G 555 (679)
T 4e6h_A 505 EYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVG 555 (679)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcC
Confidence 99888888888899999999999999999884 4456665555544443
No 226
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.73 E-value=0.0071 Score=55.85 Aligned_cols=88 Identities=16% Similarity=0.261 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchh----------------hhhHHHHHHHHHHHHHHcCCHHHH
Q 008613 70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEG----------------RTLLLACSLNSMSCYLKTKQYDEC 133 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~----------------~~l~~~~~~nlA~~ylklg~y~eA 133 (559)
.++.+...|+.+|.+++|..|+..|.+||.+....+.... ..--..+.|.++.||.+++++++|
T Consensus 62 ~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~A 141 (167)
T 3ffl_A 62 KYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDA 141 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHH
Confidence 4778889999999999999999999999987664321110 001235889999999999999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHH
Q 008613 134 IKVGSEVLAYDAKNVKALYRRGQAY 158 (559)
Q Consensus 134 i~~~~~AL~ldP~~~kal~~rG~A~ 158 (559)
|...+.+- ..-..++....+|..|
T Consensus 142 i~~Le~Ip-~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 142 IAILDGIP-SRQRTPKINMLLANLY 165 (167)
T ss_dssp HHHHHTSC-GGGCCHHHHHHHHHHC
T ss_pred HHHHhcCC-chhcCHHHHHHHHHHh
Confidence 99765431 2335677777777765
No 227
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.55 E-value=0.007 Score=61.04 Aligned_cols=115 Identities=7% Similarity=-0.022 Sum_probs=90.6
Q ss_pred HHHHHHHhhCCChHHHHHHHHHHH------ccCcH------HHHHHHHHHHHHhHHhHH--HHHHHHHHHHHHHHc----
Q 008613 23 LKCAAEQLTHTPPEEVAEIGEKLA------NASPE------EIATMRARIDAQMNYEFN--AAKMLKKQGNELYSE---- 84 (559)
Q Consensus 23 l~~a~e~l~~~~pee~~~~~~~~~------~~~pe------e~~aa~~~l~~~~~~~~~--~a~~lk~~Gn~~~k~---- 84 (559)
..+..+.+.+.+++++..+.|... ..... .+..+...+++.+...+. ....+.-+|..|...
T Consensus 137 ~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~ 216 (301)
T 3u64_A 137 EQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESF 216 (301)
T ss_dssp HHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTT
T ss_pred hhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCcc
Confidence 455667788889999999988522 22212 334555666777766555 566899999999995
Q ss_pred -CCHHHHHHHHHHHHHhcCCC-CCchhhhhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCC
Q 008613 85 -GRFSNALQKYLLAKKNLQGI-HSSEGRTLLLACSLNSMSCYLK-TKQYDECIKVGSEVLAYDAK 146 (559)
Q Consensus 85 -g~y~eAi~~Y~kAL~l~p~~-~~~e~~~l~~~~~~nlA~~ylk-lg~y~eAi~~~~~AL~ldP~ 146 (559)
|+.++|..+|++||+++|+. .. .++..|..|+. .++++++.+.+++|+..+|.
T Consensus 217 gGd~ekA~~~ferAL~LnP~~~id---------~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 217 GGGMEKAHTAFEHLTRYCSAHDPD---------HHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp TCCHHHHHHHHHHHHHHCCTTCSH---------HHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred CCCHHHHHHHHHHHHHhCCCCCch---------HHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 99999999999999999975 55 78888888887 49999999999999999887
No 228
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.45 E-value=0.0085 Score=67.53 Aligned_cols=149 Identities=9% Similarity=-0.033 Sum_probs=105.9
Q ss_pred HHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC--------CCCCc-----hhhhhHHHHHHHHHHHHHH
Q 008613 60 IDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQ--------GIHSS-----EGRTLLLACSLNSMSCYLK 126 (559)
Q Consensus 60 l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p--------~~~~~-----e~~~l~~~~~~nlA~~ylk 126 (559)
+...+...+.....+...+......|++++|...|.+++...+ ..|.. ....-...+|...+.+..+
T Consensus 367 l~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR 446 (679)
T 4e6h_A 367 LKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKR 446 (679)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHH
Confidence 3333444555566678889999999999999999999998642 11110 0011234578888888889
Q ss_pred cCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCC
Q 008613 127 TKQYDECIKVGSEVLAY-DAKNVKALYRRGQAYKDIGR-LEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGP 204 (559)
Q Consensus 127 lg~y~eAi~~~~~AL~l-dP~~~kal~~rG~A~~~lg~-~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~ 204 (559)
.+..+.|...|.+|++. .+...+.|...+......++ ++.|...|+++++..|+++..+..+......+++...++.-
T Consensus 447 ~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~l 526 (679)
T 4e6h_A 447 IQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSL 526 (679)
T ss_dssp HHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999988 44556777766766666654 89999999999999999999886666655555444333333
Q ss_pred ccch
Q 008613 205 RGLL 208 (559)
Q Consensus 205 ~~~~ 208 (559)
++++
T Consensus 527 fera 530 (679)
T 4e6h_A 527 FESS 530 (679)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 229
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=95.42 E-value=0.7 Score=48.42 Aligned_cols=100 Identities=13% Similarity=0.049 Sum_probs=82.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCC----H
Q 008613 76 KQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD---AKN----V 148 (559)
Q Consensus 76 ~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ld---P~~----~ 148 (559)
.+|..|+..|+|.+|+..|.+.++.+....+ ..+...+|.....+|..++++.++...++++.... +.+ +
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd---~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDD---KNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSC---THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhcccc---chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 6899999999999999999999988766433 56777889999999999999999999999987643 122 3
Q ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHHhC
Q 008613 149 KALYRRGQAYK-DIGRLEEAVSDLSNAHEVS 178 (559)
Q Consensus 149 kal~~rG~A~~-~lg~~eeAi~dlekAl~l~ 178 (559)
.....-|..|. ..++|..|..+|-.++.-.
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f 211 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEAFEGF 211 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence 45666788889 8999999999999987543
No 230
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=95.25 E-value=0.41 Score=51.47 Aligned_cols=121 Identities=11% Similarity=-0.048 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCch-----h--------------------------hhhHHHH
Q 008613 68 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSE-----G--------------------------RTLLLAC 116 (559)
Q Consensus 68 ~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e-----~--------------------------~~l~~~~ 116 (559)
+.....|...+..+...|+.++|...|.+|+.. |....-. . ......+
T Consensus 210 p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l 288 (493)
T 2uy1_A 210 YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLL 288 (493)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHH
Confidence 344788999999999999999999999999999 7653200 0 0001245
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008613 117 SLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIG-RLEEAVSDLSNAHEVSPDDGTIADVLRD 190 (559)
Q Consensus 117 ~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg-~~eeAi~dlekAl~l~P~~~~a~~~L~~ 190 (559)
|...+..+.+.+.++.|...|.+| +..+.....|...+..-...+ +++.|...|+++++..|+++..+.....
T Consensus 289 w~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid 362 (493)
T 2uy1_A 289 RINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFL 362 (493)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 666666666788899999999999 433335666666666666666 5999999999999999998876554433
No 231
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.88 E-value=0.16 Score=53.66 Aligned_cols=103 Identities=11% Similarity=-0.085 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCC
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD---AKN 147 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ld---P~~ 147 (559)
...+..+|..|++.|+|++|++.|.++...+..... +..++.+...+++..++|..+...+.++..+. ++.
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~------kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~ 204 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGA------KIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDW 204 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCS------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHH------HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCH
Confidence 445778999999999999999999999988766543 56788899999999999999999999987652 222
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008613 148 ---VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP 179 (559)
Q Consensus 148 ---~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P 179 (559)
.+.....|..+...++|.+|...|-.++.-..
T Consensus 205 ~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 205 ERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 24556678888899999999999988877543
No 232
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=93.81 E-value=0.28 Score=53.13 Aligned_cols=82 Identities=9% Similarity=-0.088 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008613 114 LACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE 193 (559)
Q Consensus 114 ~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~ 193 (559)
..|+.++|.+..-...+..|..+|.+|+.+.|++...|..+|..+...+++-+|+-+|-+++....-.+.+..+|..+..
T Consensus 152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 34777889888888999999999999999999999999999999999999999999999999987778889988888766
Q ss_pred HH
Q 008613 194 IL 195 (559)
Q Consensus 194 ~l 195 (559)
..
T Consensus 232 ~~ 233 (497)
T 1ya0_A 232 KA 233 (497)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 233
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=93.25 E-value=0.61 Score=43.23 Aligned_cols=102 Identities=19% Similarity=0.162 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--c-----
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLA--Y----- 143 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~--l----- 143 (559)
.+.....+..++-.|.|..|+-.+.+. + .+...+-.+.||.++++|..|+...+..|+ +
T Consensus 33 ~eY~lL~~I~LyyngEY~R~Lf~L~~l------N--------T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~ 98 (242)
T 3kae_A 33 PEYRMLMSIVLYLNGEYTRALFHLHKL------N--------TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPD 98 (242)
T ss_dssp -CTHHHHHHHHHHTTCHHHHHHHHHTC------C--------BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCC
T ss_pred hHHHhhhhhhhhhcchHhHHHHHHHhc------c--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcc
Confidence 344556788889999998888765431 1 133566788999999999999999999993 2
Q ss_pred ----------CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008613 144 ----------DAKNVK-ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIAD 186 (559)
Q Consensus 144 ----------dP~~~k-al~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~ 186 (559)
||.+-+ .+...|..+...|+-+||+.+|.....++|=.+.+..
T Consensus 99 ~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEn 152 (242)
T 3kae_A 99 VDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVEN 152 (242)
T ss_dssp CCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred cccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHH
Confidence 344444 4556788899999999999999999999987665543
No 234
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.39 E-value=0.34 Score=55.04 Aligned_cols=59 Identities=10% Similarity=0.117 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008613 116 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNA 174 (559)
Q Consensus 116 ~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekA 174 (559)
++.--+..++..|+|+-|+..+.+|+.+-|.....|++++.+|..+|+|+.|+-.+..+
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 44445677778899999999999999999999999999999999999999999776644
No 235
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.05 E-value=2.8 Score=44.41 Aligned_cols=105 Identities=12% Similarity=0.060 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCC
Q 008613 70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLA---YDAK 146 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~---ldP~ 146 (559)
.+.....++..|+..|+|.+|...+.....-.-..- ....+..++......|+..++|..|...++++.. -.+.
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~---~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~ 212 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSM---EMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPK 212 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSS---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCC
Confidence 355567789999999999999999888754322221 2455677888889999999999999999998742 2233
Q ss_pred C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613 147 N----VKALYRRGQAYKDIGRLEEAVSDLSNAHEV 177 (559)
Q Consensus 147 ~----~kal~~rG~A~~~lg~~eeAi~dlekAl~l 177 (559)
. ...+...|..+..-++|.+|..+|..++..
T Consensus 213 ~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 213 YESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3 356777889999999999999999998864
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.37 E-value=0.53 Score=53.42 Aligned_cols=61 Identities=18% Similarity=0.225 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEV 140 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~A 140 (559)
...|..++..+..+|+|+-|+.+-++|+.+.|.+-. +|+.|+.||.++|+|+.|+-..+.+
T Consensus 337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~---------tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 337 SDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFE---------SWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHH---------HHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhH---------HHHHHHHHHHHhccHHHHHHHHhcC
Confidence 457888999999999999999999999999998854 9999999999999999999654443
No 237
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=91.14 E-value=1.9 Score=46.40 Aligned_cols=111 Identities=8% Similarity=0.029 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHH
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA-KNVK 149 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP-~~~k 149 (559)
...+...-..|.+.|++++|+.+|.+..... -.|+ ...|..+-.+|.+.|++++|.+.+.+..+..- -+..
T Consensus 105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g-~~Pd-------~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ 176 (501)
T 4g26_A 105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFG-IQPR-------LRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEP 176 (501)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-CCCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCc-------cceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHH
Confidence 4456667788999999999999999877641 1222 34777888899999999999999999887542 3677
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Q 008613 150 ALYRRGQAYKDIGRLEEAVSDLSNAHEV--SPDDGTIADVLRD 190 (559)
Q Consensus 150 al~~rG~A~~~lg~~eeAi~dlekAl~l--~P~~~~a~~~L~~ 190 (559)
.|..+-.+|...|++++|...|++..+. .|+. ..+..|..
T Consensus 177 ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~-~T~~~l~~ 218 (501)
T 4g26_A 177 ELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSK-STFDMIEE 218 (501)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCH-HHHHHHHH
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCH-HHHHHHHH
Confidence 8889999999999999999999987664 4554 34444443
No 238
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=91.05 E-value=0.95 Score=48.91 Aligned_cols=80 Identities=13% Similarity=-0.119 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008613 73 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALY 152 (559)
Q Consensus 73 ~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~ 152 (559)
-+..+|+...-+..+..|..+|.+|+.+.|.... .|+.+|.++...+++-+|+-+|.+++-....++.+.-
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~---------~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~ 224 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQ---------PYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAAST 224 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSH---------HHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCc---------hHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHH
Confidence 4667899988899999999999999999999876 9999999999999999999999999988888999999
Q ss_pred HHHHHHHHc
Q 008613 153 RRGQAYKDI 161 (559)
Q Consensus 153 ~rG~A~~~l 161 (559)
++...+...
T Consensus 225 nL~~~f~~~ 233 (497)
T 1ya0_A 225 NLQKALSKA 233 (497)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998888653
No 239
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=90.90 E-value=1.6 Score=46.78 Aligned_cols=112 Identities=8% Similarity=-0.075 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHHH
Q 008613 72 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK-QYDECIKVGSEVLAYDAKNVKA 150 (559)
Q Consensus 72 ~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg-~y~eAi~~~~~AL~ldP~~~ka 150 (559)
..|...+..+.+.+.++.|...|.+| . .|.. . ..+|...|......+ +++.|...|+.+++..|+.+..
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~~-~-------~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~ 356 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-G-NEGV-G-------PHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLL 356 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSCC-C-------HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCCC-C-------hHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHH
Confidence 45666777777788899999999999 3 3332 1 225556666666666 6999999999999999999988
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 008613 151 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 197 (559)
Q Consensus 151 l~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~ 197 (559)
+...+.-...+|+.+.|...|+++ +....++..........+.
T Consensus 357 ~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~ 399 (493)
T 2uy1_A 357 KEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGS 399 (493)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCC
Confidence 777777778899999999999987 3456666666655555443
No 240
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.12 E-value=3.2 Score=43.03 Aligned_cols=63 Identities=8% Similarity=0.004 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLA 142 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ 142 (559)
...+......++..|+|.+|+..+.+++..+|.+.. +|..+..+|...|+..+|++.|.++.+
T Consensus 171 ~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~---------~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 171 VLAHTAKAEAEIACGRASAVIAELEALTFEHPYREP---------LWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH---------HHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445666788899999999999999999999888754 899999999999999999999988754
No 241
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=90.09 E-value=1.2 Score=44.02 Aligned_cols=69 Identities=17% Similarity=0.074 Sum_probs=61.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008613 123 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA 191 (559)
Q Consensus 123 ~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a 191 (559)
-+++.+++++++..+...|+-+|.+++....+-+.|+-.|+|+.|..-++-+.+++|+.......+..+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~l 74 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHL 74 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHH
Confidence 456789999999999999999999999999999999999999999999999999999986655444443
No 242
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=89.73 E-value=5.3 Score=44.19 Aligned_cols=29 Identities=17% Similarity=0.190 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008613 70 AAKMLKKQGNELYSEGRFSNALQKYLLAK 98 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL 98 (559)
....|+..|..+.+.++++.|+.+|.++-
T Consensus 680 ~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 680 AEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 36789999999999999999999999863
No 243
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=89.66 E-value=2.4 Score=42.04 Aligned_cols=63 Identities=13% Similarity=0.064 Sum_probs=54.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613 79 NELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA 150 (559)
Q Consensus 79 n~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka 150 (559)
..+++.|+.++|+......|+-.|.+.. ....+-..++-.|+|+.|+.-+..+.+++|.....
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~---------~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~ 67 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDAS---------LRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG 67 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH
Confidence 4678899999999999999999999865 66666777788899999999999999999998643
No 244
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=88.04 E-value=7.9 Score=41.45 Aligned_cols=96 Identities=9% Similarity=0.070 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHH
Q 008613 87 FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD-AKNVKALYRRGQAYKDIGRLE 165 (559)
Q Consensus 87 y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ld-P~~~kal~~rG~A~~~lg~~e 165 (559)
+++|.+.|.+-... .-.|+ ...|..+-.+|.+.|++++|+..+.+..+.. .-+...|..+=.+|...|+++
T Consensus 86 l~~A~~lf~~M~~~-G~~Pd-------~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~ 157 (501)
T 4g26_A 86 LSRGFDIFKQMIVD-KVVPN-------EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDAD 157 (501)
T ss_dssp HHHHHHHHHHHHHT-TCCCC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHh-CCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHH
Confidence 45566666554432 11122 3477888899999999999999999988753 237788888999999999999
Q ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHH
Q 008613 166 EAVSDLSNAHEV--SPDDGTIADVLRDA 191 (559)
Q Consensus 166 eAi~dlekAl~l--~P~~~~a~~~L~~a 191 (559)
+|...|++..+. .|+. ..+..|-.+
T Consensus 158 ~A~~l~~~M~~~G~~Pd~-~ty~~Li~~ 184 (501)
T 4g26_A 158 KAYEVDAHMVESEVVPEE-PELAALLKV 184 (501)
T ss_dssp HHHHHHHHHHHTTCCCCH-HHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCH-HHHHHHHHH
Confidence 999999988764 4543 344444333
No 245
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=87.81 E-value=0.55 Score=35.88 Aligned_cols=20 Identities=15% Similarity=0.355 Sum_probs=16.7
Q ss_pred HHHhcCCCHHHHHHHHHHHh
Q 008613 451 QMRNQMNDPAMKQMFSSMVK 470 (559)
Q Consensus 451 ~m~~~m~~p~~~~m~~~mmk 470 (559)
.+.+.|+||.+++.+..++.
T Consensus 36 ~~~~~~~dP~v~~~~~~L~~ 55 (62)
T 2lnm_A 36 NIMKYQNDKEVMDVFNKISQ 55 (62)
T ss_dssp GHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhChHHHHHHHHHHH
Confidence 47778999999999888875
No 246
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=87.65 E-value=0.27 Score=38.80 Aligned_cols=20 Identities=10% Similarity=0.463 Sum_probs=15.2
Q ss_pred HHHhcCCCHHHHHHHHHHHh
Q 008613 451 QMRNQMNDPAMKQMFSSMVK 470 (559)
Q Consensus 451 ~m~~~m~~p~~~~m~~~mmk 470 (559)
.+.+.|+||.+++++..++.
T Consensus 44 ~~~k~~~nP~v~~~i~kl~~ 63 (71)
T 2llw_A 44 ALQEHMKNPEVFKKIQTLIA 63 (71)
T ss_dssp HHHHHHHSHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHH
Confidence 56677778888888887753
No 247
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.54 E-value=1.4 Score=47.73 Aligned_cols=69 Identities=9% Similarity=-0.021 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008613 112 LLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN-------VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG 182 (559)
Q Consensus 112 l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~-------~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~ 182 (559)
..+.++.-+=..|+..+.|+.|.....++. .|.+ +.++|..|.++.-.++|.+|..+|..|+...|.+.
T Consensus 229 ~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 229 TKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred hhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 346677778899999999999999999985 4432 68899999999999999999999999999988653
No 248
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.51 E-value=1.4 Score=52.29 Aligned_cols=102 Identities=11% Similarity=0.008 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCC-c-------------hhhhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008613 73 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS-S-------------EGRTLLLACSLNSMSCYLKTKQYDECIKVGS 138 (559)
Q Consensus 73 ~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~-~-------------e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~ 138 (559)
..+-+|.+++..|+|++|..+|.++-.-...+.. . .........|+.+...+.+.+.|+.+++.+.
T Consensus 844 ~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~ 923 (1139)
T 4fhn_B 844 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL 923 (1139)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3477999999999999999999887432211110 0 0112234567888889999999999999999
Q ss_pred HHHHcCCC-CH----HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008613 139 EVLAYDAK-NV----KALYRRGQAYKDIGRLEEAVSDLSNA 174 (559)
Q Consensus 139 ~AL~ldP~-~~----kal~~rG~A~~~lg~~eeAi~dlekA 174 (559)
.||+..+. +. ..|.+.=..+..+++|++|...+-..
T Consensus 924 lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 924 LADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp HHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred HHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 99987543 32 25778888999999999998887544
No 249
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=86.75 E-value=12 Score=39.12 Aligned_cols=81 Identities=20% Similarity=0.266 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHH
Q 008613 116 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAK------NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS---PDDGTIAD 186 (559)
Q Consensus 116 ~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~------~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~---P~~~~a~~ 186 (559)
+-.+++..|+..|+|.+|+..+.++++.... -...|......|..++++..+...|.++.... +.++.+..
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 3448899999999999999999988874221 25678888999999999999999999997753 35666666
Q ss_pred HHHHHHHHHH
Q 008613 187 VLRDAKEILM 196 (559)
Q Consensus 187 ~L~~a~~~l~ 196 (559)
.+..+.-.+.
T Consensus 181 ~i~~~~Gi~~ 190 (394)
T 3txn_A 181 ALDLQSGILH 190 (394)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhhHHH
Confidence 6655544443
No 250
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=84.29 E-value=7.7 Score=39.30 Aligned_cols=116 Identities=4% Similarity=-0.065 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCC---c---hhhhhHHHHHHHHHHHHHHcCC-------HHHHHH--
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS---S---EGRTLLLACSLNSMSCYLKTKQ-------YDECIK-- 135 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~---~---e~~~l~~~~~~nlA~~ylklg~-------y~eAi~-- 135 (559)
.......|-.++..|+|.+|+..|+.+|...+-..- . +.+++...|....-.+-+++.+ ....++
T Consensus 114 L~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELA 193 (325)
T 3mv2_A 114 VNEKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLELA 193 (325)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 334556899999999999999999999988764321 1 2344444443333322222211 111111
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008613 136 VGSEVLAYDAKNVKALYRRGQAY-KDIGRLEEAVSDLSNAHEVSPDDGTIAD 186 (559)
Q Consensus 136 ~~~~AL~ldP~~~kal~~rG~A~-~~lg~~eeAi~dlekAl~l~P~~~~a~~ 186 (559)
.|=.-.++.|.+...-++.|... ++.++|.-|....++.|++.|..+.+..
T Consensus 194 AYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a~q 245 (325)
T 3mv2_A 194 AYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRAEQ 245 (325)
T ss_dssp HHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHHHH
T ss_pred HHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHHH
Confidence 11111234555544445555554 6889999999999999999997654433
No 251
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=84.08 E-value=4.1 Score=45.10 Aligned_cols=91 Identities=12% Similarity=-0.070 Sum_probs=63.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008613 76 KQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRG 155 (559)
Q Consensus 76 ~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG 155 (559)
..+..++..+...++...+.+++... .+. . ..-.++...++.++|+.|...+.+.-.-.....+..|++|
T Consensus 257 ~ia~~~~~~~~~~~~~~~~~~~~~~~---~~~---~----~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ 326 (618)
T 1qsa_A 257 IVAWRLMGNDVTDEQAKWRDDAIMRS---QST---S----LIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQA 326 (618)
T ss_dssp HHHHTSCSTTCCHHHHHHHHHHHHTC---CCH---H----HHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHhccccC---CCh---H----HHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHH
Confidence 34444555554567777777765432 111 1 1222333345679999999999876654446789999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 008613 156 QAYKDIGRLEEAVSDLSNAHE 176 (559)
Q Consensus 156 ~A~~~lg~~eeAi~dlekAl~ 176 (559)
.++..+|+.++|...|+++..
T Consensus 327 ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 327 DLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHhc
Confidence 999999999999999999875
No 252
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=83.97 E-value=28 Score=35.04 Aligned_cols=27 Identities=11% Similarity=-0.117 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008613 146 KNVKALYRRGQAYKDIGRLEEAVSDLS 172 (559)
Q Consensus 146 ~~~kal~~rG~A~~~lg~~eeAi~dle 172 (559)
.++..|...|..|..-+++.+|..+|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 478899999999999999999998874
No 253
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=83.67 E-value=10 Score=38.43 Aligned_cols=113 Identities=12% Similarity=0.149 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCC-c-----hhhhhHHHHHHHHHHHHHHc--CCH-----HHHHHH
Q 008613 70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS-S-----EGRTLLLACSLNSMSCYLKT--KQY-----DECIKV 136 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~-~-----e~~~l~~~~~~nlA~~ylkl--g~y-----~eAi~~ 136 (559)
........|-.++..|+|.+|+..|+.+|...+-... . +.+++...|.-..-.+-+++ ++. ++..+.
T Consensus 101 ~l~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~ 180 (320)
T 3mkr_B 101 DLIQRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRI 180 (320)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHH
Confidence 3444567899999999999999999999998864321 1 23444444444333333333 221 222222
Q ss_pred HHHH-----HHcCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCH
Q 008613 137 GSEV-----LAYDAKNVKALYRRGQAY-KDIGRLEEAVSDLSNAHEVSPDDG 182 (559)
Q Consensus 137 ~~~A-----L~ldP~~~kal~~rG~A~-~~lg~~eeAi~dlekAl~l~P~~~ 182 (559)
++-+ .++.|.+...-++.|... ++.++|.-|....++.|++.|..+
T Consensus 181 lELAAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~ 232 (320)
T 3mkr_B 181 CEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPE 232 (320)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHH
T ss_pred HHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH
Confidence 2211 234555555555555555 688999999999999999988643
No 254
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=82.84 E-value=29 Score=31.97 Aligned_cols=83 Identities=13% Similarity=-0.037 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008613 70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK 149 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~k 149 (559)
....|+.+|..++..|++.-|..+|.++-. +..+...|.-.|+-+.-....+.+....-
T Consensus 33 ~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----------------~~~L~~Ly~~tg~~e~L~kla~iA~~~g~---- 91 (177)
T 3mkq_B 33 DSITWERLIQEALAQGNASLAEMIYQTQHS-----------------FDKLSFLYLVTGDVNKLSKMQNIAQTRED---- 91 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----------------HHHHHHHHHHHTCHHHHHHHHHHHHHTTC----
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----------------HHHHHHHHHHhCCHHHHHHHHHHHHHCcc----
Confidence 367899999999999999999999988643 23445556666666555544444433221
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 008613 150 ALYRRGQAYKDIGRLEEAVSDLSNA 174 (559)
Q Consensus 150 al~~rG~A~~~lg~~eeAi~dlekA 174 (559)
+.....++..+|+++++++.|.+.
T Consensus 92 -~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 92 -FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp -HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred -HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 223344556677777777766543
No 255
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=82.23 E-value=8.1 Score=41.11 Aligned_cols=97 Identities=10% Similarity=0.075 Sum_probs=72.4
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCc-------hhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----------CC
Q 008613 85 GRFSNALQKYLLAKKNLQGIHSS-------EGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA----------KN 147 (559)
Q Consensus 85 g~y~eAi~~Y~kAL~l~p~~~~~-------e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP----------~~ 147 (559)
...++|.....++..++-.+... +.+.....+..++-.+|+++++..-|...+...-...+ ..
T Consensus 140 ~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~ 219 (455)
T 3t5v_B 140 QFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQ 219 (455)
T ss_dssp HHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccce
Confidence 34577888899999886654321 13344445566778999999999998888765433221 23
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC
Q 008613 148 VKALYRRGQAYKDIGRLEEAVSDLSNAHEV-SPDD 181 (559)
Q Consensus 148 ~kal~~rG~A~~~lg~~eeAi~dlekAl~l-~P~~ 181 (559)
+.++|.+|..+...++|.+|..++..|+.. +|.+
T Consensus 220 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 220 IEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred EeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 689999999999999999999999999999 8865
No 256
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=80.15 E-value=18 Score=39.86 Aligned_cols=49 Identities=8% Similarity=-0.121 Sum_probs=37.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008613 78 GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEV 140 (559)
Q Consensus 78 Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~A 140 (559)
-..++..|++++|.+.+... .+ ...|.++|..+++.++++.|+..|.++
T Consensus 659 f~~~l~~~~~~~A~~~~~~~-----~~---------~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 659 FELALKVGQLTLARDLLTDE-----SA---------EMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHTCHHHHHHHHTTC-----CC---------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred eehhhhcCCHHHHHHHHHhh-----Cc---------HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 34566778888887765321 12 238999999999999999999999886
No 257
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=78.83 E-value=12 Score=33.86 Aligned_cols=69 Identities=10% Similarity=0.084 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK 149 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~k 149 (559)
+..|...+. +...++.++|-+.|..++.+.... +.+|...|..-.+.|+...|...+.+++.+.|....
T Consensus 61 I~LWIrYA~-~~ei~D~d~aR~vy~~a~~~hKkF---------AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 61 ARIQVRFAE-LKAIQEPDDARDYFQMARANCKKF---------AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HHHHHHHHH-HHHHHCGGGCHHHHHHHHHHCTTB---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred HHHHHHHHH-HHHhcCHHHHHHHHHHHHHHhHHH---------HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 334444442 245589999999999999973332 679999999999999999999999999999987644
No 258
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=75.38 E-value=74 Score=32.27 Aligned_cols=33 Identities=12% Similarity=0.227 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHh
Q 008613 68 FNAAKMLKKQGNELYSEGRFSNALQKY-LLAKKN 100 (559)
Q Consensus 68 ~~~a~~lk~~Gn~~~k~g~y~eAi~~Y-~kAL~l 100 (559)
.++-+.++...+.|.+.++|++|+++. .-|+.+
T Consensus 32 YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~l 65 (336)
T 3lpz_A 32 YEAAQETRLVAARYSKQGNWAAAVDILASVSQTL 65 (336)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Confidence 566788888999999999999999864 344443
No 259
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=74.02 E-value=6.4 Score=30.82 Aligned_cols=41 Identities=22% Similarity=0.376 Sum_probs=29.2
Q ss_pred HHHhcCCCHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 008613 451 QMRNQMNDPAMKQMFSSMVKNMSPEMMANMSEQFGIKLSREDTEKFQQT 499 (559)
Q Consensus 451 ~m~~~m~~p~~~~m~~~mmk~m~p~~~~~m~~~~g~~~~~~~a~~~~~~ 499 (559)
.+...|+||.|++.+..++.| |..+..... +++-+.++++.
T Consensus 21 Ei~~im~DP~~~~~lq~~~~N--P~~~~k~~~------nP~v~~~i~kl 61 (71)
T 2llw_A 21 EVAAIMQDPVMQSILQQAQQN--PAALQEHMK------NPEVFKKIQTL 61 (71)
T ss_dssp HHHHHHTCTHHHHHHHHHHHC--HHHHHHHHH------SHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHC--HHHHHHHHh------CHHHHHHHHHH
Confidence 456788899999999999998 877755433 56655555543
No 260
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=73.32 E-value=35 Score=40.10 Aligned_cols=100 Identities=9% Similarity=-0.042 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--cCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCC
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKN--LQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD-AKN 147 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l--~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ld-P~~ 147 (559)
...+...=+.|++.|+.++|..+|.+-.+. ....|+ ...|.-+-..|.+.|++++|++.|++..+.. .-+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd-------vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PD 199 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT-------LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPD 199 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC-------HhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCc
Confidence 445777888999999999999999764321 111222 4578888899999999999999999987653 236
Q ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh
Q 008613 148 VKALYRRGQAYKDIGR-LEEAVSDLSNAHEV 177 (559)
Q Consensus 148 ~kal~~rG~A~~~lg~-~eeAi~dlekAl~l 177 (559)
...|..+=.++...|+ .++|...|++-...
T Consensus 200 vvTYntLI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 200 LLSYAAALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 7777777778999998 47888888877664
No 261
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=72.82 E-value=5.4 Score=32.14 Aligned_cols=33 Identities=18% Similarity=0.123 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613 68 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKN 100 (559)
Q Consensus 68 ~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l 100 (559)
+..+..+..+|..+-+.|+|.+|+.+|.++|++
T Consensus 16 ~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 16 EEMARKYAINAVKADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344677888889999999999999999999875
No 262
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=72.69 E-value=19 Score=29.03 Aligned_cols=31 Identities=35% Similarity=0.322 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613 70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKN 100 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l 100 (559)
.+..+..++..+-..|+|.+|+.+|..++++
T Consensus 15 ~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 15 AAATVLKRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3555666777778888888888888888765
No 263
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=72.29 E-value=21 Score=29.13 Aligned_cols=31 Identities=32% Similarity=0.302 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613 70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKN 100 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l 100 (559)
.+..+...|..+-..|+|.+|+.+|..++++
T Consensus 14 ~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~ 44 (93)
T 1wfd_A 14 AAVAVLKRAVELDAESRYQQALVCYQEGIDM 44 (93)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3455555666666667777777777666654
No 264
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=72.17 E-value=5.7 Score=31.94 Aligned_cols=32 Identities=19% Similarity=0.190 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613 69 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKN 100 (559)
Q Consensus 69 ~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l 100 (559)
..+..+..+|..+-+.|+|.+|+.+|.++|++
T Consensus 9 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 9 DMARKYAILAVKADKEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34667778888899999999999999988875
No 265
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=71.12 E-value=24 Score=30.18 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=10.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 008613 74 LKKQGNELYSEGRFSNALQKYLLAK 98 (559)
Q Consensus 74 lk~~Gn~~~k~g~y~eAi~~Y~kAL 98 (559)
+..++..+-..|+|.+|+.+|..++
T Consensus 21 lv~~Ave~D~ag~y~eAl~lY~~Ai 45 (117)
T 2cpt_A 21 LASKAAQEDKAGNYEEALQLYQHAV 45 (117)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3333334444444444444444443
No 266
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=69.97 E-value=98 Score=31.35 Aligned_cols=132 Identities=18% Similarity=0.174 Sum_probs=77.4
Q ss_pred HHHHHHHhhCCChH-HHHHHHHHHHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Q 008613 23 LKCAAEQLTHTPPE-EVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKN- 100 (559)
Q Consensus 23 l~~a~e~l~~~~pe-e~~~~~~~~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l- 100 (559)
+++..+.+..++.+ ++++. ..++...++..++-+|.. ..+.++.-+..+++.|++..|.++-.-.++.
T Consensus 16 i~rl~~~I~~G~y~~~YEAH---------Q~~RTi~~Ry~~~k~y~e-AidLL~~GA~~ll~~~Q~~sg~DL~~llvevy 85 (336)
T 3lpz_A 16 IARLQRRIAEGQPEEQYEAA---------QETRLVAARYSKQGNWAA-AVDILASVSQTLLRSGQGGSGGDLAVLLVDTF 85 (336)
T ss_dssp HHHHHHHHHHCCHHHHHHHH---------HHHHHHHHHHHHTTCHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCccccHHH---------HHHHHHHHHHHhhcCHHH-HHHHHHHHHHHHHHCCCcchHHHHHHHHHHHH
Confidence 45555566666652 22221 114455566655544443 5888889999999999999998775333322
Q ss_pred --cCCCCCchhhhhHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008613 101 --LQGIHSSEGRTLLLACSLNSMSCYLKTKQ--------YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSD 170 (559)
Q Consensus 101 --~p~~~~~e~~~l~~~~~~nlA~~ylklg~--------y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~d 170 (559)
.....+ .....++..++..... .++||....+.=...-.++..+...|..|...++|.+|..+
T Consensus 86 ~~~~~~~~-------~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H 158 (336)
T 3lpz_A 86 RQAGQRVD-------GASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKH 158 (336)
T ss_dssp HHHTCCCC-------HHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCCCC-------HHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 221122 1133344444444432 12333333331112335789999999999999999999888
Q ss_pred H
Q 008613 171 L 171 (559)
Q Consensus 171 l 171 (559)
|
T Consensus 159 ~ 159 (336)
T 3lpz_A 159 L 159 (336)
T ss_dssp H
T ss_pred H
Confidence 7
No 267
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.53 E-value=33 Score=36.99 Aligned_cols=114 Identities=10% Similarity=-0.009 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--
Q 008613 70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN-- 147 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~-- 147 (559)
.+..++-.|..+.-+++|.+|.+++..|++..|..... ...+..++-.+-.|-+-+|++.+- .+-..+..
T Consensus 269 ~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a--~gfr~~a~K~lI~V~LLlG~iP~r------~lf~q~~l~~ 340 (523)
T 4b4t_S 269 EARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKS--LGFLQQSNKLHCCIQLLMGDIPEL------SFFHQSNMQK 340 (523)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSC--SHHHHHHHHHHHHHHHHHTCCCCH------HHHTTTSCHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhh--hhHHHHHHHHHHhHHhhcCCCCCh------HHhhchhHHH
Confidence 47888899999999999999999999999988765431 223334554555555556775431 11112332
Q ss_pred -HHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008613 148 -VKALYRRGQAYKD--IGRLEEAVSDLSNAHEVSPDDGTIADVLRDA 191 (559)
Q Consensus 148 -~kal~~rG~A~~~--lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a 191 (559)
...|+.+..++.. +..|+.++..++..+..+-...-+......+
T Consensus 341 ~L~pY~~Lv~Avr~GdL~~F~~~L~~h~~~F~~Dgty~LI~rLr~~v 387 (523)
T 4b4t_S 341 SLLPYYHLTKAVKLGDLKKFTSTITKYKQLLLKDDTYQLCVRLRSNV 387 (523)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhcceeccCChhHHHHHHHHHH
Confidence 2346777777643 3346778888888888876665444433333
No 268
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=67.27 E-value=23 Score=28.92 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 008613 69 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNL 101 (559)
Q Consensus 69 ~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~ 101 (559)
+.+..+..+|..+|+.++|.+|+.+|+++..+.
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~t 83 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALNLS 83 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHccc
Confidence 458888999999999999999999999998763
No 269
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=66.29 E-value=44 Score=31.01 Aligned_cols=80 Identities=5% Similarity=-0.196 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hcCCCCCch--------hhhhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 008613 68 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKK--NLQGIHSSE--------GRTLLLACSLNSMSCYLKTKQYDECIKVG 137 (559)
Q Consensus 68 ~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~--l~p~~~~~e--------~~~l~~~~~~nlA~~ylklg~y~eAi~~~ 137 (559)
.+.+...+-+..||.+.++|..|+...++.|. ++. +|+.. ...-....+.-+|..+...|+.++||.++
T Consensus 59 lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~-d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~ 137 (242)
T 3kae_A 59 LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVER-DPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHY 137 (242)
T ss_dssp CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBC-CCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHh
Confidence 34577778889999999999999999999993 321 21110 01113346667889999999999999999
Q ss_pred HHHHHcCCCCH
Q 008613 138 SEVLAYDAKNV 148 (559)
Q Consensus 138 ~~AL~ldP~~~ 148 (559)
......+|-.+
T Consensus 138 ~~Sf~~~~lf~ 148 (242)
T 3kae_A 138 VRSFGKSFLFS 148 (242)
T ss_dssp HHHHHHCCCHH
T ss_pred hhhcCCccccc
Confidence 99998887543
No 270
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=64.87 E-value=8.9 Score=31.57 Aligned_cols=26 Identities=31% Similarity=0.335 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008613 149 KALYRRGQAYKDIGRLEEAVSDLSNA 174 (559)
Q Consensus 149 kal~~rG~A~~~lg~~eeAi~dlekA 174 (559)
..+-|++..+..-|+|++||.+.+++
T Consensus 16 H~~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 16 HQQSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHhhhHHHHHHhcCCHHHHHHHHHHH
Confidence 34445555555555555554444443
No 271
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.86 E-value=21 Score=37.32 Aligned_cols=76 Identities=9% Similarity=-0.019 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Q 008613 116 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAK---NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS--PDDGTIADVLRD 190 (559)
Q Consensus 116 ~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~---~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~--P~~~~a~~~L~~ 190 (559)
++..+|..|++.|++++|++.|.++...... -...++..-.++...++|..+...++++..+. ..++.....+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 6778999999999999999999999876432 36788899999999999999999999997763 234444444444
Q ss_pred H
Q 008613 191 A 191 (559)
Q Consensus 191 a 191 (559)
.
T Consensus 213 ~ 213 (429)
T 4b4t_R 213 Y 213 (429)
T ss_dssp H
T ss_pred H
Confidence 3
No 272
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=63.43 E-value=11 Score=30.22 Aligned_cols=31 Identities=13% Similarity=0.166 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613 70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKN 100 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l 100 (559)
.+..+..++...-..|+|.+|+.+|..++++
T Consensus 12 ~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 12 KGIELVQKAIDLDTATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566677777888889999999999998875
No 273
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=63.07 E-value=17 Score=33.60 Aligned_cols=46 Identities=13% Similarity=0.011 Sum_probs=40.7
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008613 124 YLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNA 174 (559)
Q Consensus 124 ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekA 174 (559)
.++.|+++.|.+.+... ++...|.++|.+....|+++-|..+|.++
T Consensus 15 AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 35789999999988765 67889999999999999999999999876
No 274
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=61.86 E-value=14 Score=30.48 Aligned_cols=31 Identities=16% Similarity=0.265 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613 70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKN 100 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l 100 (559)
.+..+-.++..+.+.|+|++||+++.+|..+
T Consensus 14 ~AH~~~RrAe~ll~~gkydeAIech~kAa~y 44 (97)
T 2crb_A 14 LAHQQSRRADRLLAAGKYEEAISCHRKATTY 44 (97)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3566667889999999999999999888753
No 275
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=60.30 E-value=41 Score=30.07 Aligned_cols=61 Identities=18% Similarity=0.212 Sum_probs=46.0
Q ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613 117 SLNSMSCY-LKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV 177 (559)
Q Consensus 117 ~~nlA~~y-lklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l 177 (559)
|+++|.-+ ...|+-+.--+.+...+.-++-++..++.+|.||..+|+..+|-..+.+|.+.
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 45555443 35566666666666666667778999999999999999999999999999874
No 276
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=60.02 E-value=18 Score=30.51 Aligned_cols=38 Identities=29% Similarity=0.574 Sum_probs=22.2
Q ss_pred HHHHHhhhhhHHHHHHHH--hcCchHHHHHHHHHHHHHHH
Q 008613 515 ADRVQRGVQGVKKTKNWL--LGKPGMILAICMLILAVILH 552 (559)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~l~ 552 (559)
.+.+++|.+-.+||..+- .+++.|++.+|++|+.+||.
T Consensus 62 ~~~v~~g~~eL~kA~~yqk~~rkk~~i~l~~~~i~~~i~~ 101 (109)
T 3hd7_B 62 VDYVERAVSDTKKAVKYQSKARRKKIMIIICCVILGIIIA 101 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCcceehHHHHHHHHHHHH
Confidence 445566665666664333 33555777777777766655
No 277
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=58.84 E-value=54 Score=34.35 Aligned_cols=74 Identities=15% Similarity=0.049 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008613 67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKK-NLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY 143 (559)
Q Consensus 67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~-l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l 143 (559)
.....+.+..+...|+..++|..|...++++.. .+...+ ...+....+...|..|...++|.+|..+|.+++..
T Consensus 173 ~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~---~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 173 MSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPK---YESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSC---CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCC---cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 345678888899999999999999999999753 222222 24567778888899999999999999999999754
No 278
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=58.79 E-value=20 Score=28.11 Aligned_cols=38 Identities=26% Similarity=0.371 Sum_probs=28.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008613 153 RRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD 190 (559)
Q Consensus 153 ~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~ 190 (559)
.+|..+...|++++|+.+|-+|+.++|.-......+..
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i~q~ 59 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQQ 59 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 46888888888888888888888888877665554443
No 279
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=58.24 E-value=27 Score=40.48 Aligned_cols=73 Identities=10% Similarity=-0.009 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC-Cc-------------hhhhhHHHHHHHHHHHHHHcCCHHHHHHH
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIH-SS-------------EGRTLLLACSLNSMSCYLKTKQYDECIKV 136 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~-~~-------------e~~~l~~~~~~nlA~~ylklg~y~eAi~~ 136 (559)
+-.-+-+|.+|+..|++++|..+|.+|-.-..... .. +...+....|++...++.+.+.|+-++..
T Consensus 840 ~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~f 919 (950)
T 4gq2_M 840 PIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEF 919 (950)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 33457899999999999999999998753221110 00 11122333566667777777777777777
Q ss_pred HHHHHHc
Q 008613 137 GSEVLAY 143 (559)
Q Consensus 137 ~~~AL~l 143 (559)
++.||..
T Consensus 920 A~lAI~~ 926 (950)
T 4gq2_M 920 SLLADAS 926 (950)
T ss_dssp HHHHHHT
T ss_pred HHHHHhh
Confidence 7777753
No 280
>1p58_D Envelope protein M; flavivirus, flaviviridae, glycoprotein E from borne encephalitis virus, membrane protein M, cryo-EM, ICOS virus; 9.50A {Dengue virus 2 puerto rico} SCOP: i.17.1.1
Probab=57.72 E-value=10 Score=30.06 Aligned_cols=22 Identities=18% Similarity=0.614 Sum_probs=17.0
Q ss_pred hhhHHHHHHHHhcCchHHHHHH
Q 008613 522 VQGVKKTKNWLLGKPGMILAIC 543 (559)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~ 543 (559)
.+...|+=+|+++||+..+.++
T Consensus 26 ~~~l~kvE~WilrNp~~al~a~ 47 (75)
T 1p58_D 26 WKHAQRIETWILRHPGFTIMAA 47 (75)
T ss_pred HHHHHHHHHHHHHChHHHHHHH
Confidence 3455668999999998777766
No 281
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=57.62 E-value=49 Score=29.95 Aligned_cols=71 Identities=15% Similarity=0.097 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008613 72 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACS-LNSMSCYLKTKQYDECIKVGSEVLAY 143 (559)
Q Consensus 72 ~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~-~nlA~~ylklg~y~eAi~~~~~AL~l 143 (559)
..-+..|..+|..|+|-+|=+.+..++...+... .+..-+...+. ...|..+++.|++..|...+.+++.+
T Consensus 33 ~~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~-~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 33 RRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGN-TESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3446688899999999999999999887654331 13333444455 55666677778888888888888753
No 282
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=56.54 E-value=39 Score=39.91 Aligned_cols=94 Identities=12% Similarity=-0.003 Sum_probs=65.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------------
Q 008613 77 QGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY------------- 143 (559)
Q Consensus 77 ~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l------------- 143 (559)
....++..+.|+-+.+ .+...+..+. ..|-+|.||+..|+|++|..+|.++-.-
T Consensus 818 l~~~l~~~~~~~~~~~----l~~~~~~~~~---------~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~ 884 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQ----LIGWLNSDPI---------AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLRE 884 (1139)
T ss_dssp HHHHHHHHSCTTHHHH----HHHHSCCCHH---------HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHH
T ss_pred HHHHHHHhhhHHHHHH----HhhhccCCcH---------HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcc
Confidence 3344566666655433 2334444432 4477899999999999999999877310
Q ss_pred ----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHH
Q 008613 144 ----------DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP-DDGT 183 (559)
Q Consensus 144 ----------dP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P-~~~~ 183 (559)
....+.+|+.....+...+.++.++...+.|+...+ ++..
T Consensus 885 ~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~ 935 (1139)
T 4fhn_B 885 FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDED 935 (1139)
T ss_dssp HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHH
T ss_pred cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChh
Confidence 111346777778888899999999999999998764 4443
No 283
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=55.89 E-value=50 Score=26.23 Aligned_cols=17 Identities=12% Similarity=0.149 Sum_probs=8.5
Q ss_pred HHcCCHHHHHHHHHHHH
Q 008613 125 LKTKQYDECIKVGSEVL 141 (559)
Q Consensus 125 lklg~y~eAi~~~~~AL 141 (559)
-+.|+|++|+.+|..+|
T Consensus 22 D~~g~y~eAl~lY~~ai 38 (83)
T 2v6y_A 22 DKEGKVEDAITYYKKAI 38 (83)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHH
Confidence 34455555555554443
No 284
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=54.84 E-value=50 Score=26.35 Aligned_cols=21 Identities=14% Similarity=-0.018 Sum_probs=10.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 008613 121 MSCYLKTKQYDECIKVGSEVL 141 (559)
Q Consensus 121 A~~ylklg~y~eAi~~~~~AL 141 (559)
|.-+-+.|+|++|+.+|..+|
T Consensus 26 Ave~D~~g~y~eAl~lY~~ai 46 (83)
T 2w2u_A 26 AVKADKEGNAEEAITNYKKAI 46 (83)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHH
Confidence 333344555555555554443
No 285
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=54.81 E-value=71 Score=25.57 Aligned_cols=23 Identities=9% Similarity=0.049 Sum_probs=11.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 008613 119 NSMSCYLKTKQYDECIKVGSEVL 141 (559)
Q Consensus 119 nlA~~ylklg~y~eAi~~~~~AL 141 (559)
..|.-+-..|+|++|+..|..++
T Consensus 21 ~~Ave~D~~g~y~eAl~lY~~Ai 43 (86)
T 4a5x_A 21 KRAVELDSESRYPQALVCYQEGI 43 (86)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444445555666655554444
No 286
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=54.00 E-value=55 Score=34.87 Aligned_cols=48 Identities=10% Similarity=0.027 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHcCCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613 130 YDECIKVGSEVLAYDAK-----------NVKALYRRGQAYKDIGRLEEAVSDLSNAHEV 177 (559)
Q Consensus 130 y~eAi~~~~~AL~ldP~-----------~~kal~~rG~A~~~lg~~eeAi~dlekAl~l 177 (559)
|+..+++++.|+.+-|. ...|+..++++|+..++|++|+..+++++..
T Consensus 153 ~~~I~~dL~~A~~~Lp~~~~~~~~gr~tk~aA~allarv~L~~~~~~~A~~~a~~vi~~ 211 (517)
T 3qnk_A 153 YDFILEDLKKATEMLPASYGSREKGRATKGAAYALKSRVELYDKRYEDVIKSCAEVYKL 211 (517)
T ss_dssp HHHHHHHHHHHHHHSCSCCCSTTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCccccCCcccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677888888876553 1368889999999999999999999999863
No 287
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=53.77 E-value=24 Score=28.74 Aligned_cols=28 Identities=21% Similarity=0.184 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 008613 505 LNDLDRMMLWADRVQRGVQGVKKTKNWL 532 (559)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (559)
-|.|+.+..-++.++.....+++.-..+
T Consensus 32 gekL~~L~~kt~~L~~~s~~F~~~A~~l 59 (91)
T 3hd7_A 32 DQKLSELDDRADALQAGASQFETSAAKL 59 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666777777777766655555443333
No 288
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=52.49 E-value=97 Score=37.27 Aligned_cols=86 Identities=14% Similarity=0.025 Sum_probs=52.0
Q ss_pred hhhhHHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008613 109 GRTLLLACSLNSMSCYLKT----KQ----YDECIKVGSEVLAY-DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP 179 (559)
Q Consensus 109 ~~~l~~~~~~nlA~~ylkl----g~----y~eAi~~~~~AL~l-dP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P 179 (559)
.+..++.+++..+.++.++ .. .++-.+.|.++++. ++++.+++.....-...+++|-.|++.+.+.++-.|
T Consensus 1236 ~k~~l~~al~~k~~ala~~~~~~~~~~~~~~~~~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~k~ 1315 (1354)
T 3lxu_X 1236 QKNTLIEALSKKGIAVAKLAVLDDCIKDSLAEINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEEKR 1315 (1354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCSGGGHHHHHHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4556666777755555443 22 22223444444443 556666654444444578999999999999998876
Q ss_pred CCHHHHHHHHHHHHHH
Q 008613 180 DDGTIADVLRDAKEIL 195 (559)
Q Consensus 180 ~~~~a~~~L~~a~~~l 195 (559)
..+.+..+..+.+.|
T Consensus 1316 -~~~~~~~~~~~~~~l 1330 (1354)
T 3lxu_X 1316 -TRDHFVELAAINGAL 1330 (1354)
T ss_dssp -CHHHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHc
Confidence 445556655555544
No 289
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=52.19 E-value=71 Score=25.92 Aligned_cols=18 Identities=11% Similarity=0.158 Sum_probs=9.2
Q ss_pred HHHcCCHHHHHHHHHHHH
Q 008613 124 YLKTKQYDECIKVGSEVL 141 (559)
Q Consensus 124 ylklg~y~eAi~~~~~AL 141 (559)
+-..++|++|+.+|..++
T Consensus 25 ~D~~g~y~eAl~~Y~~Ai 42 (93)
T 1wfd_A 25 LDAESRYQQALVCYQEGI 42 (93)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHH
Confidence 334455566555554444
No 290
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=51.73 E-value=49 Score=27.04 Aligned_cols=62 Identities=15% Similarity=0.028 Sum_probs=40.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008613 76 KQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLA 142 (559)
Q Consensus 76 ~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ 142 (559)
..|..+|..|+|-+|=+.+..+....+. .+..-+...+....|..+.+.|++ |...+.+++.
T Consensus 6 ~~~~~lfn~g~~~eaHEvlE~~W~~~~~---~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 6 EEVLGLWRAGRYYEVHEVLEPYWLKATG---EERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCH---HHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCC---chHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 4677888888898888888888876522 222334444444555556566666 7776776665
No 291
>3i4g_A SUSD-like carbohydrate binding protein BF1063; structural genomics, center for structural genomics, JCSG; HET: MSE EPE; 1.35A {Bacteroides fragilis nctc 9343}
Probab=51.30 E-value=64 Score=34.58 Aligned_cols=47 Identities=13% Similarity=0.049 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHcCCC-------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008613 130 YDECIKVGSEVLAYDAK-------------NVKALYRRGQAYKDIGRLEEAVSDLSNAHE 176 (559)
Q Consensus 130 y~eAi~~~~~AL~ldP~-------------~~kal~~rG~A~~~lg~~eeAi~dlekAl~ 176 (559)
|+..+++++.|+.+-|. ...|+..++++|+..++|++|+..+++++.
T Consensus 167 ~~~I~~DL~~A~~~Lp~~~~~~~~~~gr~tk~aA~allarv~L~~~~~~~A~~~a~~vi~ 226 (528)
T 3i4g_A 167 LKWCVTEFTAAAADLPRFSAIPAGEAGRACKQAALAFLGRTCMLQKDWKSGAKAFHDIME 226 (528)
T ss_dssp HHHHHHHHHHHHHHSCCGGGCCGGGTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccccCCcccCCcCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 45567788888876662 135888999999999999999999998876
No 292
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=50.43 E-value=9.3 Score=28.86 Aligned_cols=42 Identities=12% Similarity=0.222 Sum_probs=28.5
Q ss_pred HHHhcCCCHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 008613 451 QMRNQMNDPAMKQMFSSMVKNMSPEMMANMSEQFGIKLSREDTEKFQQTM 500 (559)
Q Consensus 451 ~m~~~m~~p~~~~m~~~mmk~m~p~~~~~m~~~~g~~~~~~~a~~~~~~~ 500 (559)
.....|+||.+++.+.++++| |..+. +.+ -+++-+..++.-+
T Consensus 13 e~~~~m~dP~~~~~lq~i~~N--P~~~~---~~~---~dP~v~~~~~~L~ 54 (62)
T 2lnm_A 13 DVAMAFQNPRVQAALMECSEN--PMNIM---KYQ---NDKEVMDVFNKIS 54 (62)
T ss_dssp HHHHHTTSHHHHHHHHHHTTC--GGGHH---HHT---TCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHC--HHHHH---HHH---hChHHHHHHHHHH
Confidence 577888899999999998888 76443 332 2666655555443
No 293
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=49.98 E-value=48 Score=34.98 Aligned_cols=48 Identities=8% Similarity=-0.158 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHcCCC-----------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613 130 YDECIKVGSEVLAYDAK-----------------------NVKALYRRGQAYKDIGRLEEAVSDLSNAHEV 177 (559)
Q Consensus 130 y~eAi~~~~~AL~ldP~-----------------------~~kal~~rG~A~~~lg~~eeAi~dlekAl~l 177 (559)
|+..+.+++.|+.+-|. ...++..++++|+..++|++|+..+++++..
T Consensus 156 y~~I~~DL~~A~~~Lp~~~~~~~~~~~~~~~~~~~~~r~tk~aA~allarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 156 LSYAKAELLTAIEDLPYQYGTQTNLYYGSYGAQWQGKLFNKLSAYSVLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp HHHHHHHHHHHHHHCCSSCCCSSSCBTTBCGGGGTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccCCccccccccccccccccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 45567778888775442 1357888999999999999999999988864
No 294
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=48.83 E-value=58 Score=37.72 Aligned_cols=97 Identities=11% Similarity=0.001 Sum_probs=66.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cC-----------
Q 008613 77 QGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLA-YD----------- 144 (559)
Q Consensus 77 ~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~-ld----------- 144 (559)
....+...+.|+-|.+ .+...|..+. .-|-+|.||+..|++++|..+|.+|-. +.
T Consensus 816 l~~~L~~~~~~~~a~e----L~~~~~~t~~---------~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~ 882 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQ----LIGWLNSDPI---------AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLRE 882 (950)
T ss_dssp HHHHHHHTTCHHHHHH----HGGGCCSSHH---------HHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHH
T ss_pred HHHHHHHhcHHHHHHH----HHhhcCCChH---------HHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhh
Confidence 4455666777664432 3344444432 336799999999999999999987641 11
Q ss_pred ---------CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHH
Q 008613 145 ---------AK--NVKALYRRGQAYKDIGRLEEAVSDLSNAHEV-SPDDGTIAD 186 (559)
Q Consensus 145 ---------P~--~~kal~~rG~A~~~lg~~eeAi~dlekAl~l-~P~~~~a~~ 186 (559)
++ ...+|+.....+...+-|+.++...+.|+.. .++++....
T Consensus 883 ~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~ 936 (950)
T 4gq2_M 883 FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSI 936 (950)
T ss_dssp HHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHH
T ss_pred hhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchH
Confidence 11 1347777888888999999999999999975 456665433
No 295
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=48.19 E-value=86 Score=26.66 Aligned_cols=17 Identities=18% Similarity=0.366 Sum_probs=9.1
Q ss_pred HHcCCHHHHHHHHHHHH
Q 008613 125 LKTKQYDECIKVGSEVL 141 (559)
Q Consensus 125 lklg~y~eAi~~~~~AL 141 (559)
-..++|++|+.+|..++
T Consensus 29 D~ag~y~eAl~lY~~Ai 45 (117)
T 2cpt_A 29 DKAGNYEEALQLYQHAV 45 (117)
T ss_dssp HHHTCHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHH
Confidence 34456666666554444
No 296
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=47.49 E-value=97 Score=24.42 Aligned_cols=17 Identities=24% Similarity=0.184 Sum_probs=8.8
Q ss_pred HHcCCHHHHHHHHHHHH
Q 008613 125 LKTKQYDECIKVGSEVL 141 (559)
Q Consensus 125 lklg~y~eAi~~~~~AL 141 (559)
-..|+|++|+..|..++
T Consensus 24 D~~g~y~eAl~~Y~~ai 40 (85)
T 2v6x_A 24 DTATQYEEAYTAYYNGL 40 (85)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 34455555555554444
No 297
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=47.24 E-value=36 Score=35.84 Aligned_cols=73 Identities=18% Similarity=0.133 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCc--------------hhhhhHHHHHHHHHHHHHHcCCHHHHHHH
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSS--------------EGRTLLLACSLNSMSCYLKTKQYDECIKV 136 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~--------------e~~~l~~~~~~nlA~~ylklg~y~eAi~~ 136 (559)
...+..+.+.....++|.||.-++.....+...+... ....++..+|......+.+.+.|+.|+..
T Consensus 35 i~~l~~L~~~h~~~~ny~EAa~~l~lhA~l~~w~~~~~~~~~~~~~~~~~qt~~~~ke~L~~~~i~~f~kg~~~E~ai~l 114 (436)
T 2yin_A 35 IRYLYKLRDLHLDCDNYTEAAYTLLLHTWLLKWSDEQCASQVMQTGQQHPQTHRQLKETLYETIIGYFDKGKMWEEAISL 114 (436)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSCCC--------------CHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHhCCCccccCcccccCCCCccccHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 5566778999999999999988875444443322211 11223334455555555666677777777
Q ss_pred HHHHHHc
Q 008613 137 GSEVLAY 143 (559)
Q Consensus 137 ~~~AL~l 143 (559)
|..++.+
T Consensus 115 ~k~L~~~ 121 (436)
T 2yin_A 115 CKELAEQ 121 (436)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766643
No 298
>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=47.10 E-value=17 Score=28.29 Aligned_cols=19 Identities=11% Similarity=0.469 Sum_probs=12.8
Q ss_pred HHHh-cCCCHHHHHHHHHHH
Q 008613 451 QMRN-QMNDPAMKQMFSSMV 469 (559)
Q Consensus 451 ~m~~-~m~~p~~~~m~~~mm 469 (559)
.++. -++||.+++-+..+|
T Consensus 47 ~i~~~~~~dPrv~~~l~~L~ 66 (71)
T 2llv_A 47 AIGQDLFTDPRLMTIMATLM 66 (71)
T ss_dssp THHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHhhCcHHHHHHHHHH
Confidence 4566 677887777766654
No 299
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.35 E-value=1.7e+02 Score=30.01 Aligned_cols=99 Identities=11% Similarity=-0.012 Sum_probs=67.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcC----CCC----CchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------
Q 008613 78 GNELYSEGRFSNALQKYLLAKKNLQ----GIH----SSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY------ 143 (559)
Q Consensus 78 Gn~~~k~g~y~eAi~~Y~kAL~l~p----~~~----~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l------ 143 (559)
..+.....++.+|+++..+...... ... .....+....+....+.+|+..+++++|....+++-.+
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~ 162 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDS 162 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCC
Confidence 3345566789999998876643321 100 01112334557778899999999999999888887643
Q ss_pred -CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008613 144 -DAK-NVKALYRRGQAYKDIGRLEEAVSDLSNAHE 176 (559)
Q Consensus 144 -dP~-~~kal~~rG~A~~~lg~~eeAi~dlekAl~ 176 (559)
+|. +.+.|+.++..|...++|.++..++-.++.
T Consensus 163 ~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 163 IPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 221 345666678888899999998888777775
No 300
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=46.34 E-value=1.9e+02 Score=27.06 Aligned_cols=103 Identities=10% Similarity=0.007 Sum_probs=72.9
Q ss_pred HHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008613 92 QKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLA--YDAKNVKALYRRGQAYKDIGRLEEAVS 169 (559)
Q Consensus 92 ~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~--ldP~~~kal~~rG~A~~~lg~~eeAi~ 169 (559)
.++.+|+.....++.+..+.-...+|...+.++ ..+...++...|..... +.-..+..|-..|..+...|+|.+|..
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~ 136 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKV 136 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 577788887777776666666777888777765 12336688888877765 455678888888999999999999999
Q ss_pred HHHHHHHhCCCC-HHHHHHHHHHHHHH
Q 008613 170 DLSNAHEVSPDD-GTIADVLRDAKEIL 195 (559)
Q Consensus 170 dlekAl~l~P~~-~~a~~~L~~a~~~l 195 (559)
.|+.++...-.- ..+.......+.++
T Consensus 137 Vy~~GI~~~A~P~~rL~~~~~~F~~R~ 163 (202)
T 3esl_A 137 LLELGAENNCRPYNRLLRSLSNYEDRL 163 (202)
T ss_dssp HHHHHHHTTCBSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCccHHHHHHHHHHHHHHH
Confidence 999999975322 22333444444444
No 301
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=46.21 E-value=24 Score=27.68 Aligned_cols=30 Identities=17% Similarity=0.215 Sum_probs=26.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 008613 75 KKQGNELYSEGRFSNALQKYLLAKKNLQGI 104 (559)
Q Consensus 75 k~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~ 104 (559)
..+|..+...|++++|+.+|.+||.+++.-
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP 50 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQP 50 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 458999999999999999999999987764
No 302
>3j27_B Matrix protein, small envelope protein M; flavivirus, fusion protein, protein complex, membrane, chape virus; HET: NAG; 3.60A {Dengue virus 2} PDB: 3j2p_B* 1p58_D
Probab=44.23 E-value=20 Score=28.30 Aligned_cols=24 Identities=21% Similarity=0.653 Sum_probs=18.1
Q ss_pred hhhHHHHHHHHhcCchHHHHHHHH
Q 008613 522 VQGVKKTKNWLLGKPGMILAICML 545 (559)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~ 545 (559)
.+...|+=+|+++||++.++++++
T Consensus 26 ~~~l~rvE~WilrNp~~al~~~~~ 49 (75)
T 3j27_B 26 WKHAQRIETWILRHPGFTIMAAIL 49 (75)
T ss_dssp HHHHHHHHHHHHHCCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHChHHHHHHHHH
Confidence 445566999999999887776664
No 303
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=42.05 E-value=57 Score=34.49 Aligned_cols=47 Identities=13% Similarity=0.041 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHcCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008613 130 YDECIKVGSEVLAYDAK--------NVKALYRRGQAYKDIGRLEEAVSDLSNAHE 176 (559)
Q Consensus 130 y~eAi~~~~~AL~ldP~--------~~kal~~rG~A~~~lg~~eeAi~dlekAl~ 176 (559)
|+..+++++.|+.+-|. ...++..++++|+..++|++|+..+++++.
T Consensus 154 y~~I~~DL~~A~~~Lp~~~~~gr~tk~aA~allarvyL~~~~~~~A~~~a~~vi~ 208 (481)
T 3jq1_A 154 WAQAKEDLKTAASLLPITNKIGKPTQGAAYAALGKIYVYEENWQEAINVLEPLTQ 208 (481)
T ss_dssp HHHHHHHHHHHHHHSCSSCSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHGGGGS
T ss_pred HHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 46677888888876553 245888899999999999999998887753
No 304
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=41.86 E-value=98 Score=27.94 Aligned_cols=60 Identities=8% Similarity=0.044 Sum_probs=46.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHHH-HHHHH--HHcCCHHHHHHHHHHHHHh
Q 008613 118 LNSMSCYLKTKQYDECIKVGSEVLAYDAKN------VKALYR-RGQAY--KDIGRLEEAVSDLSNAHEV 177 (559)
Q Consensus 118 ~nlA~~ylklg~y~eAi~~~~~AL~ldP~~------~kal~~-rG~A~--~~lg~~eeAi~dlekAl~l 177 (559)
+..+..++..|+|-+|-+.++.+....+.. .+.+.. ++.++ ...|++.-|...+++++..
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 455667777799999999999999876655 455555 55554 4569999999999999874
No 305
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=41.13 E-value=32 Score=32.11 Aligned_cols=32 Identities=22% Similarity=0.046 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008613 149 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 180 (559)
Q Consensus 149 kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~ 180 (559)
.++|.+|..+...++|.+|..++..|+..+|.
T Consensus 15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~ 46 (203)
T 3t5x_A 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHR 46 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCH
Confidence 44555555555555555555555555555443
No 306
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=40.66 E-value=81 Score=28.21 Aligned_cols=84 Identities=7% Similarity=-0.009 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHcCCHHHH
Q 008613 90 ALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLA--YDAKNVKALYRRGQAYKDIGRLEEA 167 (559)
Q Consensus 90 Ai~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~--ldP~~~kal~~rG~A~~~lg~~eeA 167 (559)
=..++.+++.....++.+....-...+|...+.+. .++...|..+.. +.-..+..|-.-|..+...|++.+|
T Consensus 47 l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A 120 (152)
T 4a1g_A 47 LITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYN------SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHA 120 (152)
T ss_dssp HHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTB------SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 34566777777666665555555566666666542 346677776664 4456688888889999999999999
Q ss_pred HHHHHHHHHhCC
Q 008613 168 VSDLSNAHEVSP 179 (559)
Q Consensus 168 i~dlekAl~l~P 179 (559)
...|+.++...-
T Consensus 121 ~~Vy~~Gi~~~A 132 (152)
T 4a1g_A 121 SAVLQRGIQNQA 132 (152)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC
Confidence 999999998753
No 307
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=40.37 E-value=54 Score=34.31 Aligned_cols=30 Identities=10% Similarity=-0.108 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008613 147 NVKALYRRGQAYKDIGRLEEAVSDLSNAHE 176 (559)
Q Consensus 147 ~~kal~~rG~A~~~lg~~eeAi~dlekAl~ 176 (559)
...++..++++|+..++|++|+..+++++.
T Consensus 189 k~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 189 KYAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 345566666666666666666666666664
No 308
>3otn_A SUSD superfamily protein; putative outer membrane protein, carbohydrate binding, structural genomics; HET: MSE; 1.95A {Parabacteroides distasonis}
Probab=39.67 E-value=58 Score=34.37 Aligned_cols=47 Identities=15% Similarity=-0.084 Sum_probs=36.7
Q ss_pred HH-HHHHHHHHHHHc-CCC--------CHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHH
Q 008613 130 YD-ECIKVGSEVLAY-DAK--------NVKALYRRGQAYKDIG---------RLEEAVSDLSNAHE 176 (559)
Q Consensus 130 y~-eAi~~~~~AL~l-dP~--------~~kal~~rG~A~~~lg---------~~eeAi~dlekAl~ 176 (559)
|+ ..+++++.|+.+ -|. ...++..++++|+..+ +|++|+..+++++.
T Consensus 160 y~~~I~~DL~~A~~~~Lp~~~~~gr~tk~aA~allarvyL~~~~~~~~~~~~~~~~A~~~a~~vi~ 225 (482)
T 3otn_A 160 YDEIIIPDLLEAEQSDLAFSDHTGRVSMGAVKALLADVYLTYAGYPLQGGKSYYAESAKRSLEVIK 225 (482)
T ss_dssp HHHTHHHHHHHHHTSCCCSCCSSSCCCHHHHHHHHHHHHHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCcCcCCcCcHHHHHHHHHHHHHHhCCCcccCcHHHHHHHHHHHHHHHc
Confidence 45 577788888876 442 2468888999999888 89999999988876
No 309
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=39.25 E-value=38 Score=27.97 Aligned_cols=37 Identities=27% Similarity=0.373 Sum_probs=24.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008613 153 RRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLR 189 (559)
Q Consensus 153 ~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~ 189 (559)
.+|..+...|+++.|+.+|-+|+.++|.-..+...+.
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~LL~i~q 61 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQ 61 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3577777777777777777777777776544444433
No 310
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=39.06 E-value=59 Score=34.51 Aligned_cols=28 Identities=14% Similarity=0.129 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008613 115 ACSLNSMSCYLKTKQYDECIKVGSEVLA 142 (559)
Q Consensus 115 ~~~~nlA~~ylklg~y~eAi~~~~~AL~ 142 (559)
.++.-+|.+|+-.++|++|+..++++|.
T Consensus 204 aA~allArvyL~~~~~~~A~~~a~~vi~ 231 (495)
T 3lew_A 204 VVLGILSRACLYARQWEKAKTYSDKLLA 231 (495)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3444444444444555555555544443
No 311
>3ckc_A SUSD; TPR repeat, carbohydrate binding, starch binding, sugar BIND protein; HET: MES; 1.50A {Bacteroides thetaiotaomicron} SCOP: a.118.8.6 PDB: 3ck8_A* 3ck9_A* 3ckb_A* 3ck7_A*
Probab=38.80 E-value=1.3e+02 Score=31.69 Aligned_cols=88 Identities=13% Similarity=0.046 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHc------------------------CCHHHHHHHHHHHHHcC
Q 008613 89 NALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT------------------------KQYDECIKVGSEVLAYD 144 (559)
Q Consensus 89 eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylkl------------------------g~y~eAi~~~~~AL~ld 144 (559)
..|.....+|+..+.....+...++..+++-||.+|+.+ .-|+..+++++.|+.+-
T Consensus 104 ~~I~~aN~~i~~i~~~~~~~~~~~~gEA~flRA~~Yf~Lv~~fG~VPl~~~~~~~~~~R~s~~evy~~I~~DL~~A~~~L 183 (527)
T 3ckc_A 104 YDITQYNFFLDQTEGMTDAETLRQRAEIRFLRALHYWYFLDLFGKAPFKEHFSNDLPVEKKGTELYTYIQNELNEIEADM 183 (527)
T ss_dssp HHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHSEEEECSSCSSSCCEEEEHHHHHHHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCCccccCCCcCCHHHHHHHHHHHHHHHHHhC
Confidence 345555555555443211111455666677777776654 12456788888888765
Q ss_pred CC----------CHHHHHHHHHHHHHc------CCHHHHHHHHHHHHH
Q 008613 145 AK----------NVKALYRRGQAYKDI------GRLEEAVSDLSNAHE 176 (559)
Q Consensus 145 P~----------~~kal~~rG~A~~~l------g~~eeAi~dlekAl~ 176 (559)
|. ...|+..++++|+.. ++|++|+..+++++.
T Consensus 184 p~~~~~~~gr~tk~aA~allArvyL~~~~~~~~~~~~~A~~~a~~vi~ 231 (527)
T 3ckc_A 184 YEPRQAPFGRADKAANWLLRARLYLNAGVYTGQTDYAKAEEYASKVIG 231 (527)
T ss_dssp CCTTCSCTTSCCHHHHHHHHHHHHHTHHHHHSSCCHHHHHHHHHHHHT
T ss_pred ccCCCCCCCcHHHHHHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHh
Confidence 53 145778888888864 899999999998885
No 312
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=38.77 E-value=1.2e+02 Score=31.34 Aligned_cols=52 Identities=19% Similarity=0.195 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHH
Q 008613 144 DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV------SPDDGTIADVLRDAKEIL 195 (559)
Q Consensus 144 dP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l------~P~~~~a~~~L~~a~~~l 195 (559)
.-.++--|..+|-.|++.+++.||+..|-.+-.+ .-+|.+|++.+-++-..+
T Consensus 292 ~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eIAnel 349 (472)
T 3re2_A 292 SDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKYNYSKDDEEMYKEFHEIANDL 349 (472)
T ss_dssp TTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHTH
T ss_pred ccCCccchhhhhhhhhhcchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHH
Confidence 3445667778888999999999999999887664 234677777776664443
No 313
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=38.50 E-value=66 Score=28.80 Aligned_cols=30 Identities=3% Similarity=-0.082 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008613 114 LACSLNSMSCYLKTKQYDECIKVGSEVLAY 143 (559)
Q Consensus 114 ~~~~~nlA~~ylklg~y~eAi~~~~~AL~l 143 (559)
..+++.+|.+|.++|+..+|-+...+|.+.
T Consensus 125 ~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 125 ASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 348999999999999999999999999865
No 314
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=38.50 E-value=1.5e+02 Score=28.89 Aligned_cols=52 Identities=17% Similarity=0.114 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Q 008613 88 SNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK-TKQYDECIKVGSEVL 141 (559)
Q Consensus 88 ~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylk-lg~y~eAi~~~~~AL 141 (559)
+.|...|.+|+.+. .. -.+.++++.-+..|.+..|+. +++.++|+..+.+|+
T Consensus 173 e~a~~aY~~A~~iA-~~-L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Af 225 (260)
T 2npm_A 173 EDALKAYKDATVVA-KD-LEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAF 225 (260)
T ss_dssp HHHHHHHHHHHHHH-TT-SCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-Hh-CCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45677788888765 22 122344555566677766665 678888888777765
No 315
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=38.21 E-value=1.3e+02 Score=28.61 Aligned_cols=84 Identities=7% Similarity=0.002 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHcCCHHHH
Q 008613 90 ALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLA--YDAKNVKALYRRGQAYKDIGRLEEA 167 (559)
Q Consensus 90 Ai~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~--ldP~~~kal~~rG~A~~~lg~~eeA 167 (559)
=+.++.+|+.....++.+....-+..+|...+.+ .++....|..+.. +.-..+..|-..|..+...|+|.+|
T Consensus 96 L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~------~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A 169 (223)
T 4aez_C 96 LVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY------IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKA 169 (223)
T ss_dssp HHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT------CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHc------cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHH
Confidence 3567788888877776666566666677776653 2455566666654 4556788888889999999999999
Q ss_pred HHHHHHHHHhCC
Q 008613 168 VSDLSNAHEVSP 179 (559)
Q Consensus 168 i~dlekAl~l~P 179 (559)
...|+.++...-
T Consensus 170 ~~Vy~~Gi~~~A 181 (223)
T 4aez_C 170 DEVYQKGKRMKA 181 (223)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHcCC
Confidence 999999999763
No 316
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=36.81 E-value=63 Score=34.42 Aligned_cols=57 Identities=23% Similarity=0.219 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHhcCCC--CCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008613 87 FSNALQKYLLAKKNLQGI--HSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY 143 (559)
Q Consensus 87 y~eAi~~Y~kAL~l~p~~--~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l 143 (559)
|+.-+..++.|+.+.|.. .....+.-+..++.-+|.+|+-.++|++|+..+.++|..
T Consensus 153 ~~~I~~dL~~A~~~Lp~~~~~~~~gr~tk~aA~allarv~L~~~~~~~A~~~a~~vi~~ 211 (517)
T 3qnk_A 153 YDFILEDLKKATEMLPASYGSREKGRATKGAAYALKSRVELYDKRYEDVIKSCAEVYKL 211 (517)
T ss_dssp HHHHHHHHHHHHHHSCSCCCSTTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCccccCCcccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556678888888752 122344556678888999999999999999999999953
No 317
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=36.79 E-value=1.2e+02 Score=31.79 Aligned_cols=52 Identities=10% Similarity=0.061 Sum_probs=38.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHH
Q 008613 144 DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV------SPDDGTIADVLRDAKEIL 195 (559)
Q Consensus 144 dP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l------~P~~~~a~~~L~~a~~~l 195 (559)
.-.++--|..+|-.|+..++|.||+..|-.+-.+ +-+|.+|++.+-++-..+
T Consensus 314 ~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eIAnel 371 (550)
T 3u84_A 314 RDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFEVANDV 371 (550)
T ss_dssp TTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHTH
T ss_pred ccCCccceeecchhhhhcchHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHh
Confidence 4455667778888999999999999999887654 235678887776664443
No 318
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=36.68 E-value=75 Score=35.16 Aligned_cols=55 Identities=18% Similarity=0.164 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCC
Q 008613 147 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH 201 (559)
Q Consensus 147 ~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~ 201 (559)
-...+..+|...+..|+|..|...+..++..+|+|..++..+..+.++++...+.
T Consensus 448 g~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~~~ 502 (658)
T 2cfu_A 448 GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQAEN 502 (658)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhccC
Confidence 3456777888889999999999999999999999999999999999999766543
No 319
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=36.16 E-value=72 Score=29.69 Aligned_cols=37 Identities=3% Similarity=-0.103 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008613 113 LLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK 149 (559)
Q Consensus 113 ~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~k 149 (559)
.+..+|.+|.+++..++|.+|.+++..|++..|....
T Consensus 13 ~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~ 49 (203)
T 3t5x_A 13 RVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQ 49 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHH
Confidence 4567888999999999999999999999999887643
No 320
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=36.08 E-value=1.7e+02 Score=30.67 Aligned_cols=92 Identities=12% Similarity=0.078 Sum_probs=59.5
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH
Q 008613 85 GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRL 164 (559)
Q Consensus 85 g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~ 164 (559)
.+|.-|+-.+-..-++.|...... +. .-|.+||...++. +.-.++--|..+|-.++..++|
T Consensus 259 ~~YPmALgnLgDLEei~pt~grp~-------~~----------~Lf~~AI~~ar~~--Y~~~hvYPYtYlgG~~~R~~~~ 319 (489)
T 4gq4_A 259 ERYPMALGNLADLEELEPTPGRPD-------PL----------TLYHKGIASAKTY--YRDEHIYPYMYLAGYHCRNRNV 319 (489)
T ss_dssp TTCHHHHHHHHHHHHHSCCTTSCC-------HH----------HHHHHHHHHHHHH--STTCCSHHHHHHHHHHHHTTCH
T ss_pred hhcchhhhcccCHhhcCCCCCCCC-------HH----------HHHHHHHHHHHHh--cccCcccceeecchHHHHhhhH
Confidence 557777777777777766553210 10 0134444444432 2445567778888899999999
Q ss_pred HHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHH
Q 008613 165 EEAVSDLSNAHEV------SPDDGTIADVLRDAKEIL 195 (559)
Q Consensus 165 eeAi~dlekAl~l------~P~~~~a~~~L~~a~~~l 195 (559)
.+|+..|..+-.+ .-+|.++++.+.++-..+
T Consensus 320 ~eAl~~wa~aa~Vi~~YnY~reDeEiYke~~eIanel 356 (489)
T 4gq4_A 320 REALQAWADTATVIQDYNYCREDEEIYKEFFEVANDV 356 (489)
T ss_dssp HHHHHHHHHHHHHHTTSCCCTTCHHHHHHHHHHHHTH
T ss_pred HHHHHHhhhhhhhhhhcccccchHHHHHHHHHHHHHh
Confidence 9999999888664 345788888777665554
No 321
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=35.90 E-value=66 Score=33.70 Aligned_cols=29 Identities=24% Similarity=0.198 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008613 148 VKALYRRGQAYKDIGRLEEAVSDLSNAHE 176 (559)
Q Consensus 148 ~kal~~rG~A~~~lg~~eeAi~dlekAl~ 176 (559)
..++..++++|+..++|++|+..+++++.
T Consensus 196 ~aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 196 WAAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 45556666666666666666666666654
No 322
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=35.88 E-value=58 Score=34.25 Aligned_cols=30 Identities=13% Similarity=0.162 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613 148 VKALYRRGQAYKDIGRLEEAVSDLSNAHEV 177 (559)
Q Consensus 148 ~kal~~rG~A~~~lg~~eeAi~dlekAl~l 177 (559)
..++..++++|+..++|++|+..+++++..
T Consensus 202 ~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 202 WAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 445555666666666666666666666543
No 323
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=35.40 E-value=68 Score=33.77 Aligned_cols=57 Identities=14% Similarity=-0.021 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCc-h-------------hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008613 87 FSNALQKYLLAKKNLQGIHSS-E-------------GRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY 143 (559)
Q Consensus 87 y~eAi~~Y~kAL~l~p~~~~~-e-------------~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l 143 (559)
|+.-+..+++|+.+.|..... . .+.-+..++.-+|.+|+-.++|++|+..++++|..
T Consensus 156 y~~I~~DL~~A~~~Lp~~~~~~~~~~~~~~~~~~~~~r~tk~aA~allarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 156 LSYAKAELLTAIEDLPYQYGTQTNLYYGSYGAQWQGKLFNKLSAYSVLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp HHHHHHHHHHHHHHCCSSCCCSSSCBTTBCGGGGTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccCCccccccccccccccccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 344455678888888754311 1 14446678888999999999999999999999964
No 324
>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=34.83 E-value=27 Score=27.03 Aligned_cols=38 Identities=24% Similarity=0.471 Sum_probs=26.2
Q ss_pred HHHhcCCCHHHHHHHHHHHhc---------CCHHHHHHHHHHhCCCC
Q 008613 451 QMRNQMNDPAMKQMFSSMVKN---------MSPEMMANMSEQFGIKL 488 (559)
Q Consensus 451 ~m~~~m~~p~~~~m~~~mmk~---------m~p~~~~~m~~~~g~~~ 488 (559)
..+..|+||++++++..+.+| -+|..+..|+.-+|+.+
T Consensus 24 ~t~~~~~DP~~~~~lq~i~~NP~~i~~~~~~dPrv~~~l~~L~g~~~ 70 (71)
T 2llv_A 24 KTSEMMKDPQLVAKLIGYKQNPQAIGQDLFTDPRLMTIMATLMGVDL 70 (71)
T ss_dssp TTHHHHHSCTHHHHHHHHHHSCTTHHHHTTTCHHHHHHHHHHHTTTT
T ss_pred HHHHHhcCHHHHHHHHHHHHCHHHHHHHHhhCcHHHHHHHHHHcCCC
Confidence 467788999999988887765 14555566666666554
No 325
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=34.14 E-value=4.9e+02 Score=28.33 Aligned_cols=118 Identities=9% Similarity=-0.140 Sum_probs=65.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008613 74 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYR 153 (559)
Q Consensus 74 lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~ 153 (559)
+...+...+.+.+.+.|...|.+......-. ......++..++.-+...+...++...+.+++....+....-.+
T Consensus 217 ~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~-----~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 291 (618)
T 1qsa_A 217 MAAVAFASVARQDAENARLMIPSLAQAQQLN-----EDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERR 291 (618)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHTTCC-----HHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHhhhhccCCC-----HHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHH
Confidence 3344555666678899999988765532221 11122244444444444453556777777766544433333333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 008613 154 RGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 197 (559)
Q Consensus 154 rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~ 197 (559)
.+.+ +..++++.|..+|++.-.-.........=++.+...+++
T Consensus 292 ~r~A-lr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~ 334 (618)
T 1qsa_A 292 VRMA-LGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGR 334 (618)
T ss_dssp HHHH-HHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTC
T ss_pred HHHH-HHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCC
Confidence 3444 466999999999976543222334444445555444443
No 326
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=34.04 E-value=1.1e+02 Score=26.99 Aligned_cols=44 Identities=14% Similarity=0.080 Sum_probs=35.5
Q ss_pred hHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hcCCCCCc
Q 008613 64 MNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKK----NLQGIHSS 107 (559)
Q Consensus 64 ~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~----l~p~~~~~ 107 (559)
+.+.+..+..+...+..|...|+++.|...|.+.+. ..|.+|++
T Consensus 33 l~~ylrta~~llr~A~~y~~egd~e~AYily~R~~~L~~e~IpkHpdy 80 (146)
T 2xze_A 33 PRRYFRSGVEIIRMASIYSEEGNIEHAFILYNKYITLFIEKLPKHRDY 80 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTGGGSTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHcccCccc
Confidence 345677799999999999999999999999988654 44667664
No 327
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=33.54 E-value=68 Score=33.72 Aligned_cols=33 Identities=18% Similarity=0.041 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613 145 AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV 177 (559)
Q Consensus 145 P~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l 177 (559)
++...++..++++|+..++|++|+..+++++..
T Consensus 188 ~tk~aA~aLlARvyL~~~~~~~A~~~a~~vi~~ 220 (460)
T 3snx_A 188 PNTDVVNGLMARAYLLTGQWGEAAKAAEAARKG 220 (460)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred cCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 344567777777777778888888777777653
No 328
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=33.07 E-value=42 Score=27.68 Aligned_cols=29 Identities=17% Similarity=0.252 Sum_probs=25.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 008613 75 KKQGNELYSEGRFSNALQKYLLAKKNLQG 103 (559)
Q Consensus 75 k~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~ 103 (559)
..+|..++..|+++.|+.+|.+||.+++.
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 45899999999999999999999988665
No 329
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=31.93 E-value=65 Score=35.67 Aligned_cols=51 Identities=16% Similarity=0.157 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Q 008613 116 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEE 166 (559)
Q Consensus 116 ~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~ee 166 (559)
....+|..++..|+|.-|.+.++.++..+|+|..+...++.+|..+|.-.+
T Consensus 451 ~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~~ 501 (658)
T 2cfu_A 451 RLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQAE 501 (658)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 456678888899999999999999999999999999999999999986443
No 330
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=31.92 E-value=85 Score=32.75 Aligned_cols=17 Identities=24% Similarity=0.274 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHcCCC
Q 008613 130 YDECIKVGSEVLAYDAK 146 (559)
Q Consensus 130 y~eAi~~~~~AL~ldP~ 146 (559)
|+..+.+++.|+.+-|.
T Consensus 164 y~~I~~DL~~A~~~L~~ 180 (454)
T 3myv_A 164 YDFIIETLEEAVTLMSE 180 (454)
T ss_dssp HHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHhccc
Confidence 35566667777666554
No 331
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=30.43 E-value=55 Score=34.60 Aligned_cols=55 Identities=16% Similarity=0.110 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008613 87 FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLA 142 (559)
Q Consensus 87 y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ 142 (559)
|+.-+..++.|+.+.|.. ....+..+..++.-+|.+|+-.++|++|+..+++++.
T Consensus 154 y~~I~~DL~~A~~~Lp~~-~~~gr~tk~aA~allarvyL~~~~~~~A~~~a~~vi~ 208 (481)
T 3jq1_A 154 WAQAKEDLKTAASLLPIT-NKIGKPTQGAAYAALGKIYVYEENWQEAINVLEPLTQ 208 (481)
T ss_dssp HHHHHHHHHHHHHHSCSS-CSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHGGGGS
T ss_pred HHHHHHHHHHHHHhCCCC-CCCCcccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 344556677888887754 2234445667888899999999999999999998874
No 332
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=30.09 E-value=4.2e+02 Score=26.28 Aligned_cols=25 Identities=12% Similarity=-0.265 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH
Q 008613 114 LACSLNSMSCYLKTKQYDECIKVGS 138 (559)
Q Consensus 114 ~~~~~nlA~~ylklg~y~eAi~~~~ 138 (559)
..++.-+|..|.+.++|.+|..++-
T Consensus 134 p~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 134 PYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 3567788999999999999988774
No 333
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=29.97 E-value=3.3e+02 Score=25.90 Aligned_cols=72 Identities=11% Similarity=-0.084 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHH
Q 008613 70 AAKMLKKQGNEL-----YSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYL-KTKQYDECIKVGSEVLA 142 (559)
Q Consensus 70 ~a~~lk~~Gn~~-----~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~yl-klg~y~eAi~~~~~AL~ 142 (559)
.+-.++-+|+.| |..|+-+.|...|..|+.+....- .+.++++.-+..|.+..|+ -+++.++|+....+|+.
T Consensus 119 kVFY~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~iA~~~L-~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd 196 (227)
T 2o8p_A 119 KFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLLCEHP-DKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGK 196 (227)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHCG-GGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHccccHHHHHHHHHHHHHHHHhhC-CCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 345566677653 346667889999999997654221 1223445556677776665 57789999999999875
No 334
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.28 E-value=38 Score=28.97 Aligned_cols=42 Identities=17% Similarity=0.210 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008613 130 YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP 179 (559)
Q Consensus 130 y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P 179 (559)
|++|..+.+++|++|-. |.-...+..|.+.+..|+++|.+..
T Consensus 19 h~~AF~~Is~AL~~DE~--------g~k~~Al~lYk~GI~eLe~Gl~I~~ 60 (116)
T 2dl1_A 19 YKKAFLFVNKGLNTDEL--------GQKEEAKNYYKQGIGHLLRGISISS 60 (116)
T ss_dssp HHHHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHhhhhhc--------CCHHHHHHHHHHHHHHHHHhccccc
Confidence 45555666666655431 2222222333444455556666654
No 335
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=29.14 E-value=1.2e+02 Score=32.10 Aligned_cols=70 Identities=7% Similarity=-0.128 Sum_probs=51.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCCC--chhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCC
Q 008613 77 QGNELYSEGRFSNALQKYLLAKKNLQGIHS--SEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY-DAKN 147 (559)
Q Consensus 77 ~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~--~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l-dP~~ 147 (559)
+-..||+.++..-|-..++. ++.....|. .-.....+..+|.+|..|+-.++|.+|.+++..|++. .|..
T Consensus 182 L~kiYFkl~~~~lckni~k~-i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 182 LNNIYFRIESPQLCSNIFKN-FQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHSSCCTTHHHHHHT-HHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCHHHHHHHHHH-hccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 33578999999888887744 333222111 1123456678889999999999999999999999998 7765
No 336
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=29.13 E-value=94 Score=32.49 Aligned_cols=15 Identities=13% Similarity=-0.106 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHcCC
Q 008613 131 DECIKVGSEVLAYDA 145 (559)
Q Consensus 131 ~eAi~~~~~AL~ldP 145 (559)
+..+++++.|+.+-|
T Consensus 171 ~~I~~DL~~A~~~L~ 185 (461)
T 3kez_A 171 TEIISDLKNSTELLS 185 (461)
T ss_dssp HHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhCc
Confidence 445555555555444
No 337
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=29.05 E-value=99 Score=32.70 Aligned_cols=49 Identities=16% Similarity=0.015 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHcCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008613 130 YDECIKVGSEVLAYDAKN-----------VKALYRRGQAYKDIGRLEEAVSDLSNAHEVS 178 (559)
Q Consensus 130 y~eAi~~~~~AL~ldP~~-----------~kal~~rG~A~~~lg~~eeAi~dlekAl~l~ 178 (559)
|+..+++++.|+.+-|.. ..++..++++|+..++|++|+..+++++...
T Consensus 174 y~~I~~DL~~A~~~Lp~~~~~~~~gr~tk~aA~allArvyL~~~~~~~A~~~a~~vi~~~ 233 (495)
T 3lew_A 174 YAQSINDLEEALELIPETYVRDAKHKIDNEVVLGILSRACLYARQWEKAKTYSDKLLAKD 233 (495)
T ss_dssp HHHHHHHHHHHHHHSCTTCCCSSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcccccCcccCCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 456778888888765532 4588899999999999999999999998753
No 338
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=28.87 E-value=3.1e+02 Score=32.26 Aligned_cols=69 Identities=16% Similarity=0.065 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC
Q 008613 113 LLACSLNSMSCYLKTKQYDECIKVGSEVLAY----DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV--SPDD 181 (559)
Q Consensus 113 ~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l----dP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l--~P~~ 181 (559)
....|.-+-.+|.+.|++++|...+.+..+. ..-++..|..+-..|...|++++|+..|++-... .|+-
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDv 200 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDL 200 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcH
Confidence 3446777889999999999999999764422 3447889999999999999999999999988764 4653
No 339
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=28.72 E-value=53 Score=26.05 Aligned_cols=30 Identities=17% Similarity=0.066 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613 71 AKMLKKQGNELYSEGRFSNALQKYLLAKKN 100 (559)
Q Consensus 71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l 100 (559)
.......|..|.-.|+|+.|+.+|..+++.
T Consensus 12 i~e~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 12 IVENVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 334455788888999999999999999875
No 340
>3jys_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 2.00A {Bacteroides vulgatus atcc 8482}
Probab=28.04 E-value=2.4e+02 Score=29.76 Aligned_cols=47 Identities=11% Similarity=0.015 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHcCCCC---------HHHHHHHHHHHH------HcCCHHHHHHHHHHHHH
Q 008613 130 YDECIKVGSEVLAYDAKN---------VKALYRRGQAYK------DIGRLEEAVSDLSNAHE 176 (559)
Q Consensus 130 y~eAi~~~~~AL~ldP~~---------~kal~~rG~A~~------~lg~~eeAi~dlekAl~ 176 (559)
|+..+++++.|+.+-|.. ..++..++++|+ ..++|++|+..+++++.
T Consensus 161 y~~I~~DL~~A~~~Lp~~~~~~gr~tk~aA~allarvyL~~~~y~~~~~~~~A~~~a~~vi~ 222 (499)
T 3jys_A 161 FNWIEAELNEIKPNLPSPRSEYGVADQAVASALLARMYLNAEIYTGKARYTECINACNEVIK 222 (499)
T ss_dssp HHHHHHHHHHHGGGSCCTTSSTTSCCHHHHHHHHHHHHHTHHHHHSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCcCHHHHHHHHHHHHHhhhhccChhHHHHHHHHHHHHHh
Confidence 566778888888765532 346777777777 56899999999998875
No 341
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=27.45 E-value=1e+02 Score=32.40 Aligned_cols=17 Identities=18% Similarity=0.202 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHcCCC
Q 008613 130 YDECIKVGSEVLAYDAK 146 (559)
Q Consensus 130 y~eAi~~~~~AL~ldP~ 146 (559)
|+..+++++.|+.+-|.
T Consensus 176 y~~I~~DL~~A~~~L~~ 192 (477)
T 3mcx_A 176 YEQVVSDMSNALSGLRQ 192 (477)
T ss_dssp HHHHHHHHHHHGGGSCS
T ss_pred HHHHHHHHHHHHHhCcc
Confidence 45556666666665554
No 342
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.31 E-value=1.1e+02 Score=26.10 Aligned_cols=17 Identities=18% Similarity=0.149 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHcCCC
Q 008613 130 YDECIKVGSEVLAYDAK 146 (559)
Q Consensus 130 y~eAi~~~~~AL~ldP~ 146 (559)
|.++|..+.++|.+..+
T Consensus 45 Yk~GI~eLe~Gl~I~~~ 61 (116)
T 2dl1_A 45 YKQGIGHLLRGISISSK 61 (116)
T ss_dssp HHHHHHHHHHHHSSCCC
T ss_pred HHHHHHHHHHhcccccc
Confidence 44455556667766553
No 343
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=26.51 E-value=6.1e+02 Score=27.02 Aligned_cols=102 Identities=17% Similarity=0.124 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhcCCCCC-chhhhhHHHHHHHHHHHHHHcC
Q 008613 53 IATMRARIDAQMNYEFNAAKMLKKQGNELYS---EGRFSNALQKYLLAKKNLQGIHS-SEGRTLLLACSLNSMSCYLKTK 128 (559)
Q Consensus 53 ~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k---~g~y~eAi~~Y~kAL~l~p~~~~-~e~~~l~~~~~~nlA~~ylklg 128 (559)
+.+........++.+...++.++.++...-. ..--+.||++|++|+........ .... ....|.+++.-
T Consensus 411 ik~i~~s~i~sL~eKi~~AE~~~~k~e~~~n~~a~~yA~kAi~~Y~~Ai~~L~k~~~tdd~~--~v~~~~~~ak~----- 483 (526)
T 2wb7_A 411 INATTKAMINSLQEKIDEAEQLLAKAKGMNNENAIEYAQGAIDEYKAAINDLQKAAQQDDYQ--MFLNYLNAAKK----- 483 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHH--HHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCHH--HHHHHHHHhhh-----
Confidence 3444444555556666777777777632110 01124577777777765433221 0001 11122333322
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613 129 QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV 177 (559)
Q Consensus 129 ~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l 177 (559)
|+-|-.+|. .|.-+...|..++|..+-+.|-++
T Consensus 484 -yE~aGDyy~---------------~AA~k~~yG~~eqAe~l~~~A~~~ 516 (526)
T 2wb7_A 484 -HEMAGDYYV---------------NAARKALNGDLEQAKIDAEKAKEY 516 (526)
T ss_dssp -HHHHHHHHH---------------HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -hhhccHHHH---------------HHHHHHhcCccHHHHHHHHHHHHH
Confidence 344444333 334445678888887777766544
No 344
>3jys_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 2.00A {Bacteroides vulgatus atcc 8482}
Probab=26.50 E-value=89 Score=33.18 Aligned_cols=55 Identities=25% Similarity=0.229 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHH------HcCCHHHHHHHHHHHHH
Q 008613 88 SNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYL------KTKQYDECIKVGSEVLA 142 (559)
Q Consensus 88 ~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~yl------klg~y~eAi~~~~~AL~ 142 (559)
+.-+..++.|+.+.|.......+.-+..++.-+|.+|+ ..++|++|+..++++|.
T Consensus 162 ~~I~~DL~~A~~~Lp~~~~~~gr~tk~aA~allarvyL~~~~y~~~~~~~~A~~~a~~vi~ 222 (499)
T 3jys_A 162 NWIEAELNEIKPNLPSPRSEYGVADQAVASALLARMYLNAEIYTGKARYTECINACNEVIK 222 (499)
T ss_dssp HHHHHHHHHHGGGSCCTTSSTTSCCHHHHHHHHHHHHHTHHHHHSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCCCCcCHHHHHHHHHHHHHhhhhccChhHHHHHHHHHHHHHh
Confidence 34455567777777654322233445556666677666 56899999999999995
No 345
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=26.45 E-value=1.2e+02 Score=26.10 Aligned_cols=50 Identities=26% Similarity=0.315 Sum_probs=34.6
Q ss_pred cCCHHHHHHHHHHhCCCCC----HHHHHHHHH------------------HhccCCHHHHHHHHHHHHHHHh
Q 008613 471 NMSPEMMANMSEQFGIKLS----REDTEKFQQ------------------TMSSLSLNDLDRMMLWADRVQR 520 (559)
Q Consensus 471 ~m~p~~~~~m~~~~g~~~~----~~~a~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~ 520 (559)
+-|.+.+..+++-||+..+ .+...+... -...|||++++.+..+.+.+.+
T Consensus 58 ~Ps~~~l~~iA~~f~V~~~yl~~~~~~~~~~~el~ll~~~rd~~v~~l~~r~~~Ls~e~~~~l~~ii~~l~~ 129 (135)
T 3r1f_A 58 NPSGATMAALANFFRIKAAYFTDDEYYEKLDKELQWLCTMRDDGVRRIAQRAHGLPSAAQQKVLDRIDELRR 129 (135)
T ss_dssp CCCHHHHHHHHHHHTSCTHHHHCHHHHHHHHHHHHHHHHTTSTTHHHHHHHHTSCCHHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHhCCCHHHHcCCcchhhHHHHHHHHHHHhhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 5678899999999999854 443333222 2357999999988888776643
No 346
>3i4g_A SUSD-like carbohydrate binding protein BF1063; structural genomics, center for structural genomics, JCSG; HET: MSE EPE; 1.35A {Bacteroides fragilis nctc 9343}
Probab=25.87 E-value=1.1e+02 Score=32.56 Aligned_cols=55 Identities=13% Similarity=0.100 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhcCC----CCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008613 88 SNALQKYLLAKKNLQG----IHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLA 142 (559)
Q Consensus 88 ~eAi~~Y~kAL~l~p~----~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ 142 (559)
+.-+..++.|+.+.|. ......+.-+..++.-+|.+|+-.++|++|+..+.++|.
T Consensus 168 ~~I~~DL~~A~~~Lp~~~~~~~~~~gr~tk~aA~allarv~L~~~~~~~A~~~a~~vi~ 226 (528)
T 3i4g_A 168 KWCVTEFTAAAADLPRFSAIPAGEAGRACKQAALAFLGRTCMLQKDWKSGAKAFHDIME 226 (528)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCGGGTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCccccCCcccCCcCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3345557788888773 111234455667888899999999999999999999986
No 347
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=25.09 E-value=4.9e+02 Score=26.06 Aligned_cols=124 Identities=7% Similarity=-0.056 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCC--CCCchhhhhHHHHHHHHHHHHHHcCC
Q 008613 53 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEG-RFSNALQKYLLAKKNLQG--IHSSEGRTLLLACSLNSMSCYLKTKQ 129 (559)
Q Consensus 53 ~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g-~y~eAi~~Y~kAL~l~p~--~~~~e~~~l~~~~~~nlA~~ylklg~ 129 (559)
+++..+.+..++.......+.+......+...+ .|..|...|..+|.-... .+.....+....++...+.++..++.
T Consensus 19 FR~~l~~~E~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~~~f~~~L~~~~~~~~~~~~~d~~v~~~l~~f~~~~~ei~~ 98 (385)
T 2q13_A 19 TRSLLGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDELSS 98 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCC---CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443333332 355666667666654322 11111122233455666666655544
Q ss_pred HHHHH-HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613 130 YDECI-KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV 177 (559)
Q Consensus 130 y~eAi-~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l 177 (559)
+..-+ ......+ +.|-.--.-.-+..+.....+|+.+..+|..++..
T Consensus 99 ~~~~l~~~~~~~~-~~PL~~f~~~di~~~ke~kk~fek~~~~yd~al~k 146 (385)
T 2q13_A 99 CHAVLSTQLADAM-MFPITQFKERDLKEILTLKEVFQIASNDHDAAINR 146 (385)
T ss_dssp HHHHHHHHHHHHT-HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44332 1111111 22211111112334445556788888888777665
No 348
>3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix bundle, structural genomics protein structure initiative; HET: PGE; 2.12A {Streptococcus mutans}
Probab=24.40 E-value=3.5e+02 Score=26.94 Aligned_cols=29 Identities=17% Similarity=0.092 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008613 70 AAKMLKKQGNELYSEGRFSNALQKYLLAK 98 (559)
Q Consensus 70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL 98 (559)
.++.+..+|....+.|+...|.+.|.+|.
T Consensus 68 ~a~~~~~~a~~~~~~g~~~~a~~~~~~A~ 96 (405)
T 3fnb_A 68 HADYLEDEVERVKKVGYRDLISHLYFSAC 96 (405)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 36777778888888899888888887775
No 349
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=23.38 E-value=2.3e+02 Score=27.05 Aligned_cols=52 Identities=17% Similarity=0.176 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Q 008613 89 NALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK-TKQYDECIKVGSEVL 141 (559)
Q Consensus 89 eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylk-lg~y~eAi~~~~~AL 141 (559)
.|...|.+|+.+....- .+.++++.-+..|.+..|+. +++.++|+..+.+|+
T Consensus 148 ~a~~aY~~A~~iA~~~L-~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~af 200 (234)
T 2br9_A 148 NSLVAYKAASDIAMTEL-PPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAF 200 (234)
T ss_dssp HHHHHHHHHHHHHHHHS-CTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccC-CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45555666654432100 01123334444555554444 566666666555554
No 350
>3k66_A Beta-amyloid-like protein; X-RAY amyloid precursor protein, heparin binding, alternative splicing, developmental protein, differentiation; 2.70A {Caenorhabditis elegans} PDB: 3k6b_A*
Probab=22.71 E-value=5.1e+02 Score=24.75 Aligned_cols=164 Identities=9% Similarity=0.034 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHH----------HHHHHHHHHhcCCCCCchhhhhHHHHHHHHHH
Q 008613 53 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNA----------LQKYLLAKKNLQGIHSSEGRTLLLACSLNSMS 122 (559)
Q Consensus 53 ~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eA----------i~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~ 122 (559)
+..+...+...-...+..+-.-+..+..-++.-...+- +..|.+.+.-.+.....+...|...=....-.
T Consensus 18 f~~Ak~rLe~~hr~km~kVMkEW~Eae~q~k~l~kaDpk~Ae~~k~~m~~rFQ~~v~sLEqE~a~ErqqL~etH~qRV~a 97 (239)
T 3k66_A 18 FKKAEMRMDEKHRKKVDKVMKEWGDLETRYNEQKAKDPKGAEKFKSQMNARFQKTVSSLEEEHKRMRKEIEAVHEERVQA 97 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHcCCHHHHHHHHHHHH--HcCCCCHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHhCCCC-----HHHHHHHHHHHH
Q 008613 123 CYLKTKQYDECIKVGSEVL--AYDAKNVKALYRRGQAYKDIGRLEE--AVSDLSNAHEVSPDD-----GTIADVLRDAKE 193 (559)
Q Consensus 123 ~ylklg~y~eAi~~~~~AL--~ldP~~~kal~~rG~A~~~lg~~ee--Ai~dlekAl~l~P~~-----~~a~~~L~~a~~ 193 (559)
++ ..+-..|+..|..|| ..+|.++.-++..-..|....+-+. .+..|+-+...+|.. +.+...|..+..
T Consensus 98 ~L--Nerrr~Ale~y~~AL~~q~~pP~~~~Vl~aLk~yiRae~KDR~Htl~hy~Hl~~~dpe~A~~~k~~vl~hL~~Id~ 175 (239)
T 3k66_A 98 ML--NEKKRDATHDYRQALATHVNKPNKHSVLQSLKAYIRAEEKDRMHTLNRYRHLLKADSKEAAAYKPTVIHRLRYIDL 175 (239)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHTTHHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHccCHHHHHHhhHHHHHHHHHHHH
Q ss_pred HHHhhcCCCCCccchhhhhchhhhc
Q 008613 194 ILMKEDGHHGPRGLLIEEITEEVGA 218 (559)
Q Consensus 194 ~l~~~~~~~~~~~~~i~e~~e~~~~ 218 (559)
++.+.-.-......+-.++.+.-.+
T Consensus 176 r~NqSL~lL~~~P~L~~~vrp~i~~ 200 (239)
T 3k66_A 176 RINGTLAMLRDFPDLEKYVRPIAVT 200 (239)
T ss_dssp HHHHHHHTTTTCHHHHTTTHHHHHH
T ss_pred HHhhhHHHHHcCchHHHHHhHHHHH
No 351
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=22.59 E-value=94 Score=25.96 Aligned_cols=15 Identities=20% Similarity=0.242 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHH
Q 008613 538 MILAICMLILAVILH 552 (559)
Q Consensus 538 ~~~~~~~~~~a~~l~ 552 (559)
+++.|+.+|+++|+.
T Consensus 91 ~~~~i~~~i~~~~~~ 105 (109)
T 3hd7_B 91 ICCVILGIIIASTIG 105 (109)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhc
Confidence 566677777888875
No 352
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=22.22 E-value=4.3e+02 Score=23.69 Aligned_cols=83 Identities=12% Similarity=0.007 Sum_probs=60.8
Q ss_pred HHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008613 91 LQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLA--YDAKNVKALYRRGQAYKDIGRLEEAV 168 (559)
Q Consensus 91 i~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~--ldP~~~kal~~rG~A~~~lg~~eeAi 168 (559)
..++.+++.....+..+....-...+|...+.+. .+....|..+.. +.-..+..|-..|..+...|++.+|.
T Consensus 43 ~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~------~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~ 116 (164)
T 2wvi_A 43 STLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC------NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKAD 116 (164)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC------SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 4467777777766666555666667777777653 335556665554 45567888888899999999999999
Q ss_pred HHHHHHHHhCC
Q 008613 169 SDLSNAHEVSP 179 (559)
Q Consensus 169 ~dlekAl~l~P 179 (559)
..|+.++...-
T Consensus 117 ~Iy~~Gi~~~A 127 (164)
T 2wvi_A 117 AIFQEGIQQKA 127 (164)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHcCC
Confidence 99999999763
No 353
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=21.93 E-value=19 Score=36.88 Aligned_cols=13 Identities=8% Similarity=-0.251 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHh
Q 008613 88 SNALQKYLLAKKN 100 (559)
Q Consensus 88 ~eAi~~Y~kAL~l 100 (559)
..|+.+|++.+..
T Consensus 60 ~tAv~~~dRFl~~ 72 (358)
T 2pk2_A 60 NTAIVYMHRFYMI 72 (358)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhc
Confidence 3455555555543
No 354
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=21.72 E-value=2e+02 Score=21.57 Aligned_cols=18 Identities=11% Similarity=0.104 Sum_probs=12.7
Q ss_pred CCHHHHHHHHHHHHHHHh
Q 008613 503 LSLNDLDRMMLWADRVQR 520 (559)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~ 520 (559)
|||++++.+++|.+++..
T Consensus 2 lt~~~~~~~~~l~~~l~~ 19 (80)
T 3kz3_A 2 LTQEQLEDARRLKAIWEK 19 (80)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 677777777777776644
No 355
>3pmr_A Amyloid-like protein 1; heparin binding, cell adhesion; 2.11A {Homo sapiens} SCOP: a.47.4.0 PDB: 3q7l_A 3q7g_A 3qmk_A*
Probab=21.16 E-value=5.2e+02 Score=24.34 Aligned_cols=169 Identities=15% Similarity=0.103 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhCCChHHHHHHHHHHHccCcHHHHHHHHHHHHHhH--------HhHHHHHHHHHH
Q 008613 6 ELMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMN--------YEFNAAKMLKKQ 77 (559)
Q Consensus 6 e~l~~A~e~mk~m~pedl~~a~e~l~~~~pee~~~~~~~~~~~~pee~~aa~~~l~~~~~--------~~~~~a~~lk~~ 77 (559)
..+++|-+.|.--+-+.+-+... |+..+-.+..++.--+-.++...++..+. ..-.........
T Consensus 28 ~~f~~Ak~rLe~~hr~k~~~Vmk--------EW~eae~q~k~lpkadkk~m~~rFQ~~v~aLE~E~~~ErqqL~etH~~R 99 (219)
T 3pmr_A 28 EGFLRAKMDLEERRMRQINEVMR--------EWAMADNQSKNLPKADRQALNEHFQSILQTLEEQVSGERQRLVETHATR 99 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008613 78 GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQA 157 (559)
Q Consensus 78 Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A 157 (559)
....+...+ ..|+..|..||...|..+. ..+-.-...+....++-.-.|..|..+...||..+.-+ +-.+
T Consensus 100 V~a~Ln~rr-r~Ale~y~~ALq~~pP~~~-------~vl~aLk~yirae~KDR~Htl~hf~Hv~~~dpe~A~~~--k~~v 169 (219)
T 3pmr_A 100 VIALINDQR-RAALEGFLAALQADPPQAE-------RVLLALRRYLRAEQKEQRHTLRHYQHVAAVDPEKAQQM--RFQV 169 (219)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHTSSSCCHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHTTT--HHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHhcCCCChH-------HHHHHHHHHHHHHHHHHHhHHHHHHHHHccCHHHHhhc--chHH
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008613 158 YKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 195 (559)
Q Consensus 158 ~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l 195 (559)
+..|...++.+ .+.|.+--.++.+...+......+
T Consensus 170 l~hL~~Id~r~---NqSL~lL~~~P~l~~~i~~~i~~l 204 (219)
T 3pmr_A 170 HTHLQVIEERV---NQSLGLLDQNPHLAQELRPQIQEL 204 (219)
T ss_dssp HHHHHHHHHHH---HHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---hhhHHHHHcCchHHHHHhHHHHHH
No 356
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=20.89 E-value=2.7e+02 Score=27.04 Aligned_cols=53 Identities=15% Similarity=0.180 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Q 008613 88 SNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK-TKQYDECIKVGSEVL 141 (559)
Q Consensus 88 ~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylk-lg~y~eAi~~~~~AL 141 (559)
+.|...|.+|+.+....- .+.++++.-+.+|.+..|+. +++.++|+..+.+++
T Consensus 152 e~a~~aY~~A~~iA~~~L-~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Af 205 (260)
T 1o9d_A 152 ESTLTAYKAAQDIATTEL-APTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAF 205 (260)
T ss_dssp HHHHHHHHHHHHHHHHHS-CTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcC-CCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 356677888776542110 11233455566677666665 678888888777764
No 357
>3iv0_A SUSD homolog; NP_809186.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.35A {Bacteroides thetaiotaomicron vpi-5482}
Probab=20.44 E-value=2e+02 Score=30.12 Aligned_cols=46 Identities=9% Similarity=-0.097 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHc------CCCC-------------HHHHHHHHHHHHHcCC---------HHHHHHHHHHHH
Q 008613 130 YDECIKVGSEVLAY------DAKN-------------VKALYRRGQAYKDIGR---------LEEAVSDLSNAH 175 (559)
Q Consensus 130 y~eAi~~~~~AL~l------dP~~-------------~kal~~rG~A~~~lg~---------~eeAi~dlekAl 175 (559)
|+..+++++.|+.. -|.. ..++..++.+|+..+. |++|+...++++
T Consensus 166 y~~I~~DL~~A~~~~~~~~~Lp~~~~~~~~~~gR~tk~aA~allarvyL~~~~~~~~~~~~~~~~a~~~a~~vi 239 (481)
T 3iv0_A 166 LQNCLADLQPLLDDDPGAEVLPWSYSSYSSKGIRASRGSVIALMMHINLWLVQFDAQNKEQYYRNVVSLGEELE 239 (481)
T ss_dssp HHHHHHHHHHHHHTCTTSCSSCSCCSSTTTTTTSCCHHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcccccccCCCccccCcccCCccCHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHH
Confidence 66778889999887 4421 2456667777776543 666666666665
Done!