Query 008614
Match_columns 559
No_of_seqs 313 out of 2869
Neff 8.5
Searched_HMMs 46136
Date Thu Mar 28 14:23:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008614.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008614hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0498 K+-channel ERG and rel 100.0 7.7E-91 1.7E-95 747.8 46.9 481 12-553 66-565 (727)
2 PLN03192 Voltage-dependent pot 100.0 1.4E-69 3E-74 618.2 45.6 432 12-531 50-491 (823)
3 KOG0500 Cyclic nucleotide-gate 100.0 4.3E-67 9.2E-72 524.3 36.2 390 64-530 28-427 (536)
4 KOG0501 K+-channel KCNQ [Inorg 100.0 2.4E-64 5.2E-69 508.6 24.6 445 15-531 209-663 (971)
5 KOG0499 Cyclic nucleotide-gate 100.0 4.7E-58 1E-62 464.7 27.7 414 15-529 219-644 (815)
6 PF00520 Ion_trans: Ion transp 99.5 6.4E-13 1.4E-17 125.8 13.2 194 69-334 1-200 (200)
7 KOG3713 Voltage-gated K+ chann 99.4 5E-13 1.1E-17 137.0 11.6 182 65-335 240-427 (477)
8 PRK09392 ftrB transcriptional 99.4 4.2E-12 9.1E-17 124.4 17.5 117 405-531 6-124 (236)
9 cd00038 CAP_ED effector domain 99.4 8.6E-12 1.9E-16 106.4 13.8 109 413-531 1-112 (115)
10 PF00027 cNMP_binding: Cyclic 99.4 1E-11 2.3E-16 101.9 12.2 88 431-528 1-91 (91)
11 PRK11753 DNA-binding transcrip 99.3 3.5E-11 7.6E-16 115.7 16.7 108 415-531 6-116 (211)
12 smart00100 cNMP Cyclic nucleot 99.3 1E-10 2.2E-15 100.3 14.1 110 413-530 1-113 (120)
13 KOG0614 cGMP-dependent protein 99.3 5.4E-12 1.2E-16 129.0 6.3 120 402-531 268-392 (732)
14 KOG0614 cGMP-dependent protein 99.3 4.7E-12 1E-16 129.5 5.6 119 399-529 147-265 (732)
15 KOG1113 cAMP-dependent protein 99.2 2.3E-11 4.9E-16 119.6 7.4 109 405-525 121-229 (368)
16 KOG1545 Voltage-gated shaker-l 99.2 5.7E-12 1.2E-16 123.1 3.3 44 289-332 397-440 (507)
17 PRK11161 fumarate/nitrate redu 99.2 4.6E-10 1E-14 109.9 16.5 113 408-531 15-131 (235)
18 COG0664 Crp cAMP-binding prote 99.2 5.4E-10 1.2E-14 107.0 16.3 112 409-530 3-117 (214)
19 PLN02868 acyl-CoA thioesterase 99.2 2.6E-10 5.7E-15 120.9 13.3 112 405-528 7-120 (413)
20 COG2905 Predicted signal-trans 99.2 4.4E-10 9.4E-15 116.9 14.0 115 405-530 6-120 (610)
21 PRK10402 DNA-binding transcrip 99.1 4.1E-10 8.8E-15 109.6 13.1 99 423-531 25-126 (226)
22 PF07885 Ion_trans_2: Ion chan 99.1 3.6E-10 7.8E-15 90.7 10.2 55 285-339 24-78 (79)
23 KOG1419 Voltage-gated K+ chann 99.1 6.2E-09 1.3E-13 107.5 17.1 88 282-373 266-354 (654)
24 KOG1420 Ca2+-activated K+ chan 99.0 3.8E-10 8.3E-15 116.1 6.7 114 284-416 287-418 (1103)
25 TIGR03697 NtcA_cyano global ni 98.9 1.2E-08 2.5E-13 96.6 13.4 87 437-531 1-90 (193)
26 KOG1113 cAMP-dependent protein 98.9 2.1E-09 4.6E-14 105.8 8.3 117 401-529 235-352 (368)
27 PRK09391 fixK transcriptional 98.9 1.3E-08 2.8E-13 99.3 13.5 96 423-531 32-130 (230)
28 PRK13918 CRP/FNR family transc 98.8 7.2E-08 1.6E-12 92.0 14.5 81 428-519 5-90 (202)
29 PRK10537 voltage-gated potassi 98.4 3E-06 6.6E-11 88.6 14.4 52 285-336 168-219 (393)
30 KOG4390 Voltage-gated A-type K 98.4 1.7E-08 3.7E-13 99.9 -2.6 45 287-331 358-402 (632)
31 KOG2968 Predicted esterase of 98.0 6.7E-06 1.5E-10 89.8 6.5 102 420-531 499-603 (1158)
32 KOG3684 Ca2+-activated K+ chan 98.0 0.00058 1.3E-08 70.2 19.0 54 282-335 284-337 (489)
33 PF01007 IRK: Inward rectifier 97.6 0.00027 5.8E-09 72.3 10.0 53 284-336 83-137 (336)
34 KOG1418 Tandem pore domain K+ 97.4 0.00019 4.1E-09 76.4 5.6 54 286-339 116-169 (433)
35 PF08412 Ion_trans_N: Ion tran 97.4 0.00013 2.7E-09 57.4 2.8 32 13-44 36-67 (77)
36 KOG2968 Predicted esterase of 97.1 0.0043 9.3E-08 68.7 11.9 113 425-542 111-227 (1158)
37 PF04831 Popeye: Popeye protei 97.0 0.038 8.3E-07 49.0 14.9 129 416-553 14-144 (153)
38 PRK11832 putative DNA-binding 96.9 0.035 7.5E-07 52.4 14.4 101 420-531 13-114 (207)
39 KOG4404 Tandem pore domain K+ 96.0 0.0086 1.9E-07 59.2 4.6 50 286-335 187-244 (350)
40 KOG4404 Tandem pore domain K+ 95.9 0.0018 3.9E-08 63.9 -0.5 50 286-335 81-130 (350)
41 KOG3827 Inward rectifier K+ ch 95.4 0.11 2.3E-06 52.9 9.8 55 286-340 113-169 (400)
42 KOG3542 cAMP-regulated guanine 94.1 0.12 2.7E-06 55.6 6.8 111 405-527 280-392 (1283)
43 KOG1418 Tandem pore domain K+ 93.6 0.013 2.7E-07 62.3 -1.4 47 285-331 242-296 (433)
44 KOG2302 T-type voltage-gated C 92.6 4.9 0.00011 45.9 16.1 86 66-182 1157-1245(1956)
45 KOG3193 K+ channel subunit [In 92.4 0.7 1.5E-05 48.9 9.1 49 287-335 219-267 (1087)
46 COG4709 Predicted membrane pro 89.5 1.9 4.1E-05 39.7 8.0 77 347-425 6-86 (195)
47 KOG3542 cAMP-regulated guanine 88.8 0.52 1.1E-05 51.0 4.5 104 392-515 23-126 (1283)
48 PF08006 DUF1700: Protein of u 87.0 3.4 7.5E-05 38.4 8.5 56 346-403 5-64 (181)
49 PLN03223 Polycystin cation cha 85.3 35 0.00075 41.1 16.6 23 65-87 1213-1235(1634)
50 PF07883 Cupin_2: Cupin domain 77.9 4.7 0.0001 30.5 4.7 44 432-478 3-47 (71)
51 PF05899 Cupin_3: Protein of u 73.5 8.5 0.00018 30.0 5.1 41 435-479 15-55 (74)
52 KOG0500 Cyclic nucleotide-gate 72.1 1.5E+02 0.0032 31.9 17.6 12 390-401 260-271 (536)
53 PLN03192 Voltage-dependent pot 69.1 2.3E+02 0.0051 33.1 19.4 41 389-429 327-371 (823)
54 PF14377 DUF4414: Domain of un 67.4 12 0.00025 31.7 5.0 44 359-402 52-105 (108)
55 PF00520 Ion_trans: Ion transp 64.7 67 0.0015 29.2 10.3 57 157-214 66-122 (200)
56 KOG3676 Ca2+-permeable cation 64.2 2.4E+02 0.0053 32.2 15.5 72 298-370 601-683 (782)
57 KOG0501 K+-channel KCNQ [Inorg 62.4 1.4E+02 0.003 32.8 12.6 50 388-437 499-553 (971)
58 PRK13290 ectC L-ectoine syntha 61.4 61 0.0013 28.2 8.5 69 429-514 37-106 (125)
59 COG0662 {ManC} Mannose-6-phosp 54.9 39 0.00085 29.3 6.3 49 427-478 36-85 (127)
60 TIGR03037 anthran_nbaC 3-hydro 54.6 41 0.00089 30.5 6.4 48 430-478 30-80 (159)
61 PF00060 Lig_chan: Ligand-gate 51.6 24 0.00051 31.0 4.5 75 282-358 41-115 (148)
62 PF02037 SAP: SAP domain; Int 50.5 35 0.00076 22.3 4.0 26 347-372 5-35 (35)
63 PF13314 DUF4083: Domain of un 45.2 75 0.0016 23.4 5.2 39 318-356 14-56 (58)
64 KOG0498 K+-channel ERG and rel 45.1 1.1E+02 0.0025 34.8 9.3 42 389-430 371-417 (727)
65 PF14377 DUF4414: Domain of un 40.1 73 0.0016 26.8 5.4 49 359-407 8-69 (108)
66 KOG2301 Voltage-gated Ca2+ cha 36.8 2.9E+02 0.0063 34.7 11.6 16 125-141 505-520 (1592)
67 COG1917 Uncharacterized conser 35.7 85 0.0018 27.1 5.4 49 429-480 45-94 (131)
68 PRK13264 3-hydroxyanthranilate 33.8 76 0.0017 29.3 4.8 46 432-478 38-86 (177)
69 PF07697 7TMR-HDED: 7TM-HD ext 32.4 45 0.00097 31.7 3.3 59 389-448 146-207 (222)
70 COG3837 Uncharacterized conser 32.2 72 0.0016 28.8 4.2 45 432-479 47-93 (161)
71 PRK11171 hypothetical protein; 31.4 1.4E+02 0.0029 29.7 6.6 48 428-478 185-233 (266)
72 COG5559 Uncharacterized conser 31.2 64 0.0014 23.8 3.0 22 357-378 8-29 (65)
73 smart00835 Cupin_1 Cupin. This 30.8 1.5E+02 0.0032 26.2 6.3 52 428-479 31-86 (146)
74 COG3450 Predicted enzyme of th 30.6 1.5E+02 0.0032 25.5 5.7 41 434-478 52-92 (116)
75 KOG3300 NADH:ubiquinone oxidor 30.0 1.4E+02 0.003 26.0 5.3 44 348-392 62-105 (146)
76 PF14841 FliG_M: FliG middle d 28.7 84 0.0018 24.8 3.7 39 385-431 30-68 (79)
77 PF11699 CENP-C_C: Mif2/CENP-C 28.2 1.1E+02 0.0023 24.7 4.3 27 449-478 35-61 (85)
78 PF13623 SurA_N_2: SurA N-term 28.1 1.5E+02 0.0032 26.5 5.6 41 316-356 9-66 (145)
79 smart00513 SAP Putative DNA-bi 26.7 99 0.0021 20.0 3.2 25 348-372 6-35 (35)
80 PF08566 Pam17: Mitochondrial 26.0 4.8E+02 0.01 24.1 8.4 57 306-362 69-132 (173)
81 cd07313 terB_like_2 tellurium 25.9 3.3E+02 0.0072 22.1 7.2 60 347-406 20-82 (104)
82 KOG2301 Voltage-gated Ca2+ cha 25.9 2.6E+02 0.0057 35.1 8.8 31 297-327 1062-1092(1592)
83 PRK04190 glucose-6-phosphate i 25.8 3.1E+02 0.0067 25.8 7.6 50 429-478 70-130 (191)
84 PF13867 SAP30_Sin3_bdg: Sin3 24.9 1.5E+02 0.0033 21.4 4.2 37 348-389 3-46 (53)
85 PF12973 Cupin_7: ChrR Cupin-l 24.6 2.8E+02 0.0061 22.1 6.3 63 429-513 26-88 (91)
86 COG3257 GlxB Uncharacterized p 24.0 2.8E+02 0.006 26.6 6.7 78 421-516 57-136 (264)
87 PF10047 DUF2281: Protein of u 23.8 64 0.0014 24.5 2.1 23 357-379 9-31 (66)
88 PF08016 PKD_channel: Polycyst 23.7 7.7E+02 0.017 26.1 11.3 21 66-86 243-263 (425)
89 KOG3261 Uncharacterized conser 23.0 16 0.00034 32.9 -1.5 43 98-141 55-103 (202)
90 PF08285 DPM3: Dolichol-phosph 22.4 4.3E+02 0.0094 21.5 8.7 34 328-361 50-90 (91)
91 KOG1054 Glutamate-gated AMPA-t 22.1 2.2E+02 0.0047 31.4 6.3 47 288-335 598-644 (897)
92 PF06249 EutQ: Ethanolamine ut 22.0 1.6E+02 0.0035 26.5 4.7 28 448-478 96-123 (152)
93 KOG2568 Predicted membrane pro 21.9 4E+02 0.0086 29.1 8.3 43 289-332 282-324 (518)
94 PRK11171 hypothetical protein; 21.8 2.2E+02 0.0047 28.2 6.1 47 429-478 63-111 (266)
95 PF06971 Put_DNA-bind_N: Putat 20.6 2.7E+02 0.0058 20.0 4.6 42 358-399 1-49 (50)
96 PF03579 SHP: Small hydrophobi 20.5 3.6E+02 0.0078 19.9 5.6 32 314-345 17-48 (64)
97 PF10281 Ish1: Putative stress 20.1 1.4E+02 0.003 19.8 3.0 15 349-363 7-21 (38)
No 1
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=7.7e-91 Score=747.84 Aligned_cols=481 Identities=30% Similarity=0.519 Sum_probs=422.0
Q ss_pred hhhhccCCChHHHHHHHHHHHHHHHHHhhcceeEEEeeecCCCceEeeCCCcceehhhhHHHHHHHHHHHHHHHhhhcee
Q 008614 12 IIIVLYRKAIAAAIENKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHISSELREADK 91 (559)
Q Consensus 12 ~~~ii~P~s~~~~~Wd~~~~~~~~~~~~~~P~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~f~~Di~l~f~t~y~ 91 (559)
..+|++|.|++++.||.+++++|+|+++++|++||++.......| .+.....+++++|.++|++|++||++||+|||.
T Consensus 66 ~~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~--~d~~~~~~l~v~d~ivD~fflvdIvL~Frtayv 143 (727)
T KOG0498|consen 66 RKWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKC--IDGKLAAPLTVLDTIVDIFFLVDIVLNFRTAYV 143 (727)
T ss_pred cceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEeccccccc--ccccccCceeeHHHHHHHHHHHHHHHhheEEEE
Confidence 345999999999999999999999999999999999999877778 778888899999999999999999999999999
Q ss_pred ccchhhhhhhhhhhhcccccCCceeecChhhHh----hhhhhhhhhhcccccceeeeeeccCCC---Cc-chHHHHHHHH
Q 008614 92 KENQRKKFKHLWQQLKNFKKGGREVLEDPMVRM----WMLFFIDGLAILPIPQVLVIFPIRDTG---FS-TAMTFFVLQY 163 (559)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~g~~v~d~~~I~----~~~F~~Dlls~lP~~~i~~~~~~~~~~---~~-~~~~~~~l~r 163 (559)
++++ -++|.||++|| ++||++|++|++|+|++++|..+.... .. ....++.++|
T Consensus 144 ~~~s------------------~elV~dpk~IA~rYl~twFiiDlis~lP~~~i~~~~~~~~~~~~~~~~~l~~il~~~r 205 (727)
T KOG0498|consen 144 DPSS------------------YELVDDPKKIAKRYLKTWFLIDLISTLPFDQIVVLVVIGSTSLALESTILVGILLLQR 205 (727)
T ss_pred CCCC------------------ceeeeCHHHHHHHHHhhhHHHHHHHhcChhhheeeeeecccchhhhHHHHHHHHHHHH
Confidence 9843 37999999999 999999999999999999887651110 11 1256888999
Q ss_pred HHHHHHHHHhHHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhHHHhhcccCCCCCcceecCCCc
Q 008614 164 LLRVIRTYFLFTDAIEVSGVIADATWGIFAFYVLLYLQSGHMFGALWYYYAIEKATDCWREASENHTGRSHSYVFCNKCF 243 (559)
Q Consensus 164 l~Rl~R~~~l~~~~~~~~~~i~~~~~~~~~~~l~~~~l~~H~~aC~w~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (559)
|+||.|+.++++++++..++..+++|+..+++++++++++||.||+||++|.++.++||+++
T Consensus 206 L~Rl~Rv~~l~~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~------------------ 267 (727)
T KOG0498|consen 206 LPRLRRVIPLFARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKA------------------ 267 (727)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccc------------------
Confidence 99999999999999999999999999998899999999999999999999998888887642
Q ss_pred ccccccccccCCCCCCCCccccchhhhhhhcCccccCchhHHHHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHH
Q 008614 244 GDYKLLNDSCPISTGNTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYG 323 (559)
Q Consensus 244 ~~~sWi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G 323 (559)
+|+...+....+.+..++||+| +++.+|++|+||+++||||+||||++|+|..|++|+|++|++|
T Consensus 268 ---tw~~~l~~~~~~~~~~~~fg~~------------s~~~kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~G 332 (727)
T KOG0498|consen 268 ---TWLGSLGRLLSCYNLSFTFGIY------------SLALKYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFG 332 (727)
T ss_pred ---ccccccccccccCcccccccch------------hHHHHHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHh
Confidence 5554422100123334667754 5677999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhcCCCHHHHHhcCCHHHHHHH
Q 008614 324 VVLFVFLIGRMQ----SETTRAHKINQKLRQIKHWKHFKDISTFVRAKIREAKRENLLLKHDIHIDSLVSDLPDDTAKQV 399 (559)
Q Consensus 324 ~~~fa~iig~i~----s~~~~~~~~~~~~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~~~~ll~~Lp~~Lr~~i 399 (559)
.++||++||||+ +++++.++++.|++++++||++|+||++||+||++|++|+|..++|+||++++++||+.||.+|
T Consensus 333 llL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI 412 (727)
T KOG0498|consen 333 LLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDI 412 (727)
T ss_pred HHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHH
Confidence 999999999999 5677889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCceEEEEEecCCCe
Q 008614 400 KLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSKLIGLKRQEDGNY 477 (559)
Q Consensus 400 ~~~l~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~~~~~~~~l~~G~~ 477 (559)
.+|+|.++++++|+|+++|++++.+|+.++++..|+|||+|++|||+.++||||.+|.+++.+ .+|..+...+++||+
T Consensus 413 ~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g~~~~~~~L~~Gd~ 492 (727)
T KOG0498|consen 413 KRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGGGFFVVAILGPGDF 492 (727)
T ss_pred HHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCCceEEEEEecCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999766 335567889999999
Q ss_pred eehhhhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhhhhHH-----HHHhHHHHHHHHHHHHH
Q 008614 478 CGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQSVSF-----LQLFWRFKTFKQMQMKR 552 (559)
Q Consensus 478 fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~~~~~-----~~~~~r~~~~~~~~~~~ 552 (559)
|||+.++||+..+ +++||+|+|.|+++.|+++||..++++||++++++.= .+..||.-+...+|..-
T Consensus 493 ~GeEl~~~~~~~p--------~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~l~~~~r~~s~~~r~~aa~~iq~a~ 564 (727)
T KOG0498|consen 493 FGEELLTWCLDLP--------QTRTVRALTYCELFRLSADDLKEVLQQFRRLGSKFLQHTFRYYSHLWRTWAACFIQAAW 564 (727)
T ss_pred cchHHHHHHhcCC--------CCceeehhhhhhHHhccHHHHHHHHHHhHHHHHHHHHhHHHHhhhhhhhhhhhhHHHHH
Confidence 9988777777554 6899999999999999999999999999999764322 23455555555555544
Q ss_pred h
Q 008614 553 R 553 (559)
Q Consensus 553 ~ 553 (559)
+
T Consensus 565 r 565 (727)
T KOG0498|consen 565 R 565 (727)
T ss_pred H
Confidence 4
No 2
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=100.00 E-value=1.4e-69 Score=618.25 Aligned_cols=432 Identities=16% Similarity=0.171 Sum_probs=354.7
Q ss_pred hhhhccCCChHHHHHHHHHHHHHHHHHhhcceeEEEeeecCCCceEeeCCCcceehhhhHHHHHHHHHHHHHHHhhhcee
Q 008614 12 IIIVLYRKAIAAAIENKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHISSELREADK 91 (559)
Q Consensus 12 ~~~ii~P~s~~~~~Wd~~~~~~~~~~~~~~P~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~f~~Di~l~f~t~y~ 91 (559)
--|||+|.+++++.||.+++++++|++++.|+.+. |. +......+.++|+++|++|++||+++|+|||+
T Consensus 50 ~~~ii~P~~~~~~~Wd~~~~~~~~y~~~~~p~~~~----------F~-~~~~~~~~~~~d~i~~~~F~iDi~l~f~~ay~ 118 (823)
T PLN03192 50 DGWIISPMDSRYRWWETLMVVLVAYSAWVYPFEVA----------FL-NASPKRGLEIADNVVDLFFAVDIVLTFFVAYI 118 (823)
T ss_pred CCeEECCCCcHHHHHHHHHHHHHHHHHHHHHHHHH----------ee-CCCCCCCeeeHHHHHHHHHHHHHHhheeEEEE
Confidence 34799999999999999999999999999997532 21 11122357889999999999999999999999
Q ss_pred ccchhhhhhhhhhhhcccccCCceeecChhhHh----hhhhhhhhhhcccccceeeeeeccCCCCcchHHHHHHHHHHHH
Q 008614 92 KENQRKKFKHLWQQLKNFKKGGREVLEDPMVRM----WMLFFIDGLAILPIPQVLVIFPIRDTGFSTAMTFFVLQYLLRV 167 (559)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~g~~v~d~~~I~----~~~F~~Dlls~lP~~~i~~~~~~~~~~~~~~~~~~~l~rl~Rl 167 (559)
|+ ++|.+|.||++|+ |+||++|++|++|++++.... ...........+++++|++|+
T Consensus 119 d~------------------~~~~lV~d~~~I~~~Yl~~~f~~Dlis~lP~~~i~~~~-~~~~~~~~~~~~l~llrl~Rl 179 (823)
T PLN03192 119 DP------------------RTQLLVRDRKKIAVRYLSTWFLMDVASTIPFQALAYLI-TGTVKLNLSYSLLGLLRFWRL 179 (823)
T ss_pred eC------------------CCcEEEeCHHHHHHHHHHHhHHHHHHHHhHHHHHHHHh-cCCccchHHHHHHHHHHHHHH
Confidence 86 5678999999999 899999999999998764321 111111111234455555555
Q ss_pred HHHHHhHHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhHHHhhcccCCCCCcceecCCCccccc
Q 008614 168 IRTYFLFTDAIEVSGVIADATWGIFAFYVLLYLQSGHMFGALWYYYAIEKATDCWREASENHTGRSHSYVFCNKCFGDYK 247 (559)
Q Consensus 168 ~R~~~l~~~~~~~~~~i~~~~~~~~~~~l~~~~l~~H~~aC~w~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 247 (559)
.|+.++++++++... ....+.+++++++..++++||+||+||++|.. .+..+.+
T Consensus 180 ~ri~~~~~~le~~~~--~~~~~~~~~kli~~~l~~~H~~aC~~y~i~~~------------------------~~~~~~~ 233 (823)
T PLN03192 180 RRVKQLFTRLEKDIR--FSYFWIRCARLLSVTLFLVHCAGCLYYLIADR------------------------YPHQGKT 233 (823)
T ss_pred HHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------------------cCCCCCc
Confidence 566666665554322 12234455666666677899999999999841 1123468
Q ss_pred ccccccCCCCCCCCccccchhhhhhhcCccccCchhHHHHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHH
Q 008614 248 LLNDSCPISTGNTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLF 327 (559)
Q Consensus 248 Wi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~f 327 (559)
|+..... . ..+.+++.+|++|+|||++|||||||||++|.|..|++|++++|++|+++|
T Consensus 234 Wi~~~~~----------------~-----~~~~s~~~~Yi~slYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~ 292 (823)
T PLN03192 234 WIGAVIP----------------N-----FRETSLWIRYISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLT 292 (823)
T ss_pred hHHHhhh----------------c-----cccCcHHHHHHHHHHHHHHHHhhccCCCcCCCccchHHHHHHHHHHHHHHH
Confidence 9864200 0 136789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhcCCCHHHHHhcCCHHHHHHHHHHH
Q 008614 328 VFLIGRMQSE----TTRAHKINQKLRQIKHWKHFKDISTFVRAKIREAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHF 403 (559)
Q Consensus 328 a~iig~i~s~----~~~~~~~~~~~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~~~~ll~~Lp~~Lr~~i~~~l 403 (559)
||++|+++++ .++..+++++++.+++||+++++|++||+||++|+++.|+.+ +.++++++++||++||.++..++
T Consensus 293 a~~ig~i~~li~~~~~~~~~f~~~~~~~~~ym~~~~lp~~lq~ri~~y~~~~~~~~-~~~~~~~l~~Lp~~Lr~~i~~~l 371 (823)
T PLN03192 293 AYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKDQILAYMCLRFKAE-SLNQQQLIDQLPKSICKSICQHL 371 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhc-cccHHHHHHHcCHHHHHHHHHHH
Confidence 9999999955 345567899999999999999999999999999999999754 57889999999999999999999
Q ss_pred hHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE-c-CceEEEEEecCCCeeehh
Q 008614 404 GRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS-K-SKLIGLKRQEDGNYCGEE 481 (559)
Q Consensus 404 ~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~-~-~~~~~~~~l~~G~~fGe~ 481 (559)
+.+.++++++|++++++++.+++..++++.|+|||.|+.+||.++++|||.+|+|++.. . +++..+..+++|++|||.
T Consensus 372 ~~~~l~~~~lF~~~s~~~l~~L~~~~~~~~~~pge~I~~qge~~~~lY~I~~G~V~i~~~~~~~e~~l~~l~~Gd~FGE~ 451 (823)
T PLN03192 372 FLPVVEKVYLFKGVSREILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVVSGEVEIIDSEGEKERVVGTLGCGDIFGEV 451 (823)
T ss_pred HHHHHhhCcchhcCCHHHHHHHHHhhheeeeCCCCEEEECCCCCceEEEEEecEEEEEEecCCcceeeEEccCCCEecch
Confidence 99999999999999999999999999999999999999999999999999999999754 2 233457799999999999
Q ss_pred hhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614 482 IIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 531 (559)
Q Consensus 482 ~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 531 (559)
+++ .+.+ +.+|++|.+.|+++.|++++|.++++++|+...
T Consensus 452 ~~l--~~~p--------~~~t~ra~~~s~ll~l~~~~f~~ll~~~p~d~~ 491 (823)
T PLN03192 452 GAL--CCRP--------QSFTFRTKTLSQLLRLKTSTLIEAMQTRQEDNV 491 (823)
T ss_pred HHh--cCCC--------CCCeEEEcccEEEEEEEHHHHHHHHHHhhHHHH
Confidence 774 2332 789999999999999999999999999999853
No 3
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=4.3e-67 Score=524.26 Aligned_cols=390 Identities=18% Similarity=0.222 Sum_probs=324.9
Q ss_pred ceehhhhHHHHHHHHHHHHHHHhhhceeccchhhhhhhhhhhhcccccCCceeecChhhHh-----hhhhhhhhhhcccc
Q 008614 64 GITATVIRSILDFLKLLHISSELREADKKENQRKKFKHLWQQLKNFKKGGREVLEDPMVRM-----WMLFFIDGLAILPI 138 (559)
Q Consensus 64 ~~~~~~~~~~~d~~f~~Di~l~f~t~y~~~~~~~~~~~~~~~~~~~~~~~g~~v~d~~~I~-----~~~F~~Dlls~lP~ 138 (559)
...|..+|++.|++|++|++++.||||+ ++|.+|.|-++.+ +..|.+|++|.+|+
T Consensus 28 ~~~wl~ld~~~D~vyllDi~v~~R~gyl--------------------eqGllV~~~~Kl~~hY~~s~~f~lD~l~liP~ 87 (536)
T KOG0500|consen 28 LENWLPLDYLFDFVYLLDIIVRSRTGYL--------------------EQGLLVKDTSKLRKHYVHSTQFKLDVLSLIPL 87 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhH--------------------hcCeeehhhHHHHHHHHHhhhhhhhhhhhcch
Confidence 3578999999999999999999999999 8999999988888 78999999999999
Q ss_pred cceeeeeeccCCCCcchHHHHHHHHHHHHHHHHHhHHHHHHhhhHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 008614 139 PQVLVIFPIRDTGFSTAMTFFVLQYLLRVIRTYFLFTDAIEVSGVI-ADATWGIFAFYVLLYLQSGHMFGALWYYYAIEK 217 (559)
Q Consensus 139 ~~i~~~~~~~~~~~~~~~~~~~l~rl~Rl~R~~~l~~~~~~~~~~i-~~~~~~~~~~~l~~~~l~~H~~aC~w~~i~~~~ 217 (559)
|++.++. ++. ... |++||+|+.|+++-+.+.+... .++.+ ++..++...+++.||.||+||+++..
T Consensus 88 D~l~~~~------~~~--~~~---r~nRllk~yRl~~F~~rTetrT~~Pn~f-ri~~lv~~~~ilfHWNaClYf~iS~~- 154 (536)
T KOG0500|consen 88 DLLLFKD------GSA--SLE---RLNRLLKIYRLFEFFDRTETRTTYPNAF-RISKLVHYCLILFHWNACLYFLISKA- 154 (536)
T ss_pred hHHhhcC------Ccc--hHH---HHHHHHHHHHHHHHHHHhccccCCchHH-HHHHHHHHHHHHHHHhhHHHHhhhHh-
Confidence 9987652 221 223 3455555555555444443211 23332 44445555566799999999999952
Q ss_pred hhhhHHHhhcccCCCCCcceecCCCcccccccccccCCCCCCCCccccchhhhhhhcCccccCchhHHHHHHHHHHhHhh
Q 008614 218 ATDCWREASENHTGRSHSYVFCNKCFGDYKLLNDSCPISTGNTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKL 297 (559)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sWi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Yl~slYwa~~T~ 297 (559)
.|...++|....-. ++ .++ . ....++.++|+.|+||+..||
T Consensus 155 -----------------------~g~~~d~wvY~~i~------d~-~~~---~------c~~~n~~ReY~~S~YWStLTl 195 (536)
T KOG0500|consen 155 -----------------------IGFTTDDWVYPKIN------DP-EFA---T------CDAGNLTREYLYSLYWSTLTL 195 (536)
T ss_pred -----------------------cCccccccccCCcc------Cc-ccc---c------cchhHHHHHHHHHHHHHhhhh
Confidence 23455679865211 11 011 0 113458899999999999999
Q ss_pred cccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008614 298 SAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSE----TTRAHKINQKLRQIKHWKHFKDISTFVRAKIREAKR 373 (559)
Q Consensus 298 tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~----~~~~~~~~~~~~~i~~~m~~~~lp~~L~~rv~~y~~ 373 (559)
||+|. ..+|.|+.|.+|.|+-.++|+.+||.|+|+++|+ +++..|+|++|+.+++||+.|++|+.||.||.+||+
T Consensus 196 TTiGe-~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnmna~r~EFq~~mDGiK~YM~~RkV~~~lq~rVikwfd 274 (536)
T KOG0500|consen 196 TTIGE-QPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNMNAARTEFQAKMDGIKQYMRYRKVPKALQTRVIKWFD 274 (536)
T ss_pred hhccC-CCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhhhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 99998 4678899999999999999999999999999965 445568999999999999999999999999999999
Q ss_pred HHhhhhcCCCHHHHHhcCCHHHHHHHHHHHhHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEE
Q 008614 374 ENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFV 453 (559)
Q Consensus 374 ~~~~~~~~~~~~~ll~~Lp~~Lr~~i~~~l~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI 453 (559)
|.|.+++..||+++++.||+.||.||+.+++.+.|+++++|+++.+.++.+++.++++++|+|||+|+++||.+.+||+|
T Consensus 275 Ylwa~~~~~DEeevl~~LP~kL~aeIA~nvh~dTLkkV~iF~~ce~~lL~elVLklk~qvfSPgDyICrKGdvgkEMyIV 354 (536)
T KOG0500|consen 275 YLWAHKKIVDEEEVLKLLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLVELVLKLKPQVFSPGDYICRKGDVGKEMYIV 354 (536)
T ss_pred HHHhccccccHHHHHHhCCHHHHhHhHHHHHHHHHHhhhHHHhcchhHHHHHHHHhcceeeCCCCeEEecCcccceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeEEEEEEcCceEEEEEecCCCeeehhhhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhh
Q 008614 454 LEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFN 530 (559)
Q Consensus 454 ~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~ 530 (559)
.+|.++|..++|.++...+++|++|||.++.+ +++. ..+|. |++++++++++++++|+|+|+.+.+++||+-+
T Consensus 355 k~G~L~Vv~dDg~t~~~~L~~G~~FGEisIln-i~g~-~~gNR--RtanvrSvGYSDlfvLskdDl~~aL~eYP~a~ 427 (536)
T KOG0500|consen 355 KEGKLAVVADDGVTVFVTLKAGSVFGEISILN-IKGN-KNGNR--RTANVRSVGYSDLFVLSKDDLWEALSEYPDAR 427 (536)
T ss_pred EccEEEEEecCCcEEEEEecCCceeeeeEEEE-EcCc-ccCCc--ceeeeeeeccceeeEeeHHHHHHHHHhCCHHH
Confidence 99999999988877889999999999997731 3332 23454 99999999999999999999999999999864
No 4
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-64 Score=508.63 Aligned_cols=445 Identities=17% Similarity=0.245 Sum_probs=358.0
Q ss_pred hccCCChHHHHHHHHHHHHHHHHHhhcceeEEEeeecCCCceEeeCCCcceehhhhHHHHHHHHHHHHHHHhhhceeccc
Q 008614 15 VLYRKAIAAAIENKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHISSELREADKKEN 94 (559)
Q Consensus 15 ii~P~s~~~~~Wd~~~~~~~~~~~~~~P~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~f~~Di~l~f~t~y~~~~ 94 (559)
||.--+.|+.+||..++++.+|+.+.+| |+.+|.........|.++|.++|++|++||++||+|.|+.|
T Consensus 209 IiLHYcaFKt~WDWvIL~LTFYTAimVP----------yNvaFKnk~~~~vs~lvvDSiVDVIF~vDIvLNFHTTFVGP- 277 (971)
T KOG0501|consen 209 IILHYCAFKTIWDWVILILTFYTAIMVP----------YNVAFKNKQRNNVSWLVVDSIVDVIFFVDIVLNFHTTFVGP- 277 (971)
T ss_pred EEEeeehhhhHHHHHHHHHHHHHHheee----------eeeeecccccCceeEEEecchhhhhhhhhhhhhcceeeecC-
Confidence 3444578999999988888877665555 45555554444568999999999999999999999999975
Q ss_pred hhhhhhhhhhhhcccccCCceeecChhhHh----hhhhhhhhhhcccccceeeeeeccCCCCcch-HHHHHHHHHHHHHH
Q 008614 95 QRKKFKHLWQQLKNFKKGGREVLEDPMVRM----WMLFFIDGLAILPIPQVLVIFPIRDTGFSTA-MTFFVLQYLLRVIR 169 (559)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~g~~v~d~~~I~----~~~F~~Dlls~lP~~~i~~~~~~~~~~~~~~-~~~~~l~rl~Rl~R 169 (559)
.|++|.||+.|+ |+||++|++||+|+|.+..+--.. .+-.+ ...++..||+||-|
T Consensus 278 ------------------gGEVvsdPkvIRmNYlKsWFvIDLLSCLPYDi~naF~~~d--egI~SLFSaLKVVRLLRLGR 337 (971)
T KOG0501|consen 278 ------------------GGEVVSDPKVIRMNYLKSWFVIDLLSCLPYDIFNAFERDD--EGIGSLFSALKVVRLLRLGR 337 (971)
T ss_pred ------------------CCceecChhHHhHHHHHHHHHHHHHhcccHHHHHHhhccc--ccHHHHHHHHHHHHHHHHHH
Confidence 899999999999 999999999999999876542211 11111 12334445555555
Q ss_pred HHHhHHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhHHHhhcccCCCCCcceecCCCccccccc
Q 008614 170 TYFLFTDAIEVSGVIADATWGIFAFYVLLYLQSGHMFGALWYYYAIEKATDCWREASENHTGRSHSYVFCNKCFGDYKLL 249 (559)
Q Consensus 170 ~~~l~~~~~~~~~~i~~~~~~~~~~~l~~~~l~~H~~aC~w~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sWi 249 (559)
+.|-+..+.+.. -+.++++++.|.+++||+||+||.+|..+. ...-.++...++|+
T Consensus 338 VaRKLD~YlEYG-------AA~LvLLlC~y~lvAHWlACiWysIGd~ev-----------------~~~~~n~i~~dsWL 393 (971)
T KOG0501|consen 338 VARKLDHYLEYG-------AAVLVLLLCVYGLVAHWLACIWYSIGDYEV-----------------RDEMDNTIQPDSWL 393 (971)
T ss_pred HHHHHHHHHHhh-------HHHHHHHHHHHHHHHHHHHHhheeccchhe-----------------ecccccccccchHH
Confidence 555444443321 124567778889999999999999994210 00001123457888
Q ss_pred ccccCCCCCCCCccccchhhhhhhcCc-cccCchhHHHHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHH
Q 008614 250 NDSCPISTGNTTRYNFGIYKDALQSGI-VRETYFPKKLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFV 328 (559)
Q Consensus 250 ~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa 328 (559)
..... +.+++|+|..- ..|. +..+|.-..|+.|+||.++.|||||+|+|.|.|+.|++|++++|++|+.+||
T Consensus 394 ~kLa~---~~~tpY~~~~s----~~~~~~gGPSr~S~YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYA 466 (971)
T KOG0501|consen 394 WKLAN---DIGTPYNYNLS----NKGTLVGGPSRTSAYISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYA 466 (971)
T ss_pred HHHHh---hcCCCceeccC----CCceeecCCcccceehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHH
Confidence 76543 23455554410 1111 2367778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhcCCCHHHHHhcCCHHHHHHHHHHHh
Q 008614 329 FLIGRMQSE----TTRAHKINQKLRQIKHWKHFKDISTFVRAKIREAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFG 404 (559)
Q Consensus 329 ~iig~i~s~----~~~~~~~~~~~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~~~~ll~~Lp~~Lr~~i~~~l~ 404 (559)
.++|+++.+ .++...+.+.++.+.+||+-+.+|+.|.+||.+|.--.|...+|+|.+++++-.|..+|.+|..|++
T Consensus 467 tIFG~vTTI~QQM~s~T~rYHeMlnnVReFlKL~evPK~LsERVMDYvVSTWaMtkGiDTeKVL~~CPKDMkADICVHLN 546 (971)
T KOG0501|consen 467 TIFGHVTTIIQQMTSNTNRYHEMLNNVREFLKLYEVPKGLSERVMDYVVSTWAMTKGIDTEKVLGYCPKDMKADICVHLN 546 (971)
T ss_pred HHHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhcCcCHHHHhhhCccccccceeeecc
Confidence 999999954 4444567778899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhh
Q 008614 405 RNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIID 484 (559)
Q Consensus 405 ~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~ 484 (559)
++.++..|-|+-.++.++++|+..++.....|||.|+..||..+.+.||++|.++|.+++. +++++++||+||+.+.
T Consensus 547 RKVFnEHpaFRLASDGCLRaLAm~f~~~H~APGDLlYHtGESvDaLcFvVsGSLEVIQDDE--VVAILGKGDVFGD~FW- 623 (971)
T KOG0501|consen 547 RKVFNEHPAFRLASDGCLRALAMEFQTNHCAPGDLLYHTGESVDALCFVVSGSLEVIQDDE--VVAILGKGDVFGDEFW- 623 (971)
T ss_pred hhhhccCcceeeccchhHHHHHHHHHhccCCCcceeeecCCccceEEEEEecceEEeecCc--EEEEeecCccchhHHh-
Confidence 9999999999999999999999999999999999999999999999999999999998776 6899999999999866
Q ss_pred hhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614 485 WAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 531 (559)
Q Consensus 485 ~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 531 (559)
... ....+.++|+|+++|++..|.|+.+.++++-|..+++
T Consensus 624 ---K~~----t~~qs~ANVRALTYcDLH~IKrd~Ll~VLdFYtAFan 663 (971)
T KOG0501|consen 624 ---KEN----TLGQSAANVRALTYCDLHMIKRDKLLKVLDFYTAFAN 663 (971)
T ss_pred ---hhh----hhhhhhhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHH
Confidence 211 1223788999999999999999999999999988764
No 5
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=4.7e-58 Score=464.74 Aligned_cols=414 Identities=17% Similarity=0.207 Sum_probs=349.0
Q ss_pred hccCCC-hHHHHHHHHHHHHHHHHHhhcceeEEEeeecCCCceEeeCCCcceehhhhHHHHHHHHHHHHH-HHhhhceec
Q 008614 15 VLYRKA-IAAAIENKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHIS-SELREADKK 92 (559)
Q Consensus 15 ii~P~s-~~~~~Wd~~~~~~~~~~~~~~P~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~f~~Di~-l~f~t~y~~ 92 (559)
-|||.. ++...|-.++.+.-.++.+++|+..-+|+..+.+. ..|.+.|+++|+++++||+ ++-|..|.
T Consensus 219 sidp~~~r~Y~~WL~lVtlaf~~N~w~IPlR~sfPyQT~dN~---------~~Wli~Dy~cDiIYllDmlf~q~Rl~fv- 288 (815)
T KOG0499|consen 219 SIDPYTDRLYLLWLLLVTLAFNWNCWFIPLRLSFPYQTADNI---------HYWLIADYICDIIYLLDMLFIQPRLQFV- 288 (815)
T ss_pred ccCcccchHHHHHHHHHHHHHhhceeEEeeeccCCccccccc---------hhhhhHHHHhhHHHHHHHhhhhhhheee-
Confidence 478997 99999999888888889999999877776654331 3699999999999999997 67788888
Q ss_pred cchhhhhhhhhhhhcccccCCceeecChhhHh-----hhhhhhhhhhcccccceeeeeeccCCCCcchHHHHHHHHHHHH
Q 008614 93 ENQRKKFKHLWQQLKNFKKGGREVLEDPMVRM-----WMLFFIDGLAILPIPQVLVIFPIRDTGFSTAMTFFVLQYLLRV 167 (559)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~g~~v~d~~~I~-----~~~F~~Dlls~lP~~~i~~~~~~~~~~~~~~~~~~~l~rl~Rl 167 (559)
..|.+|.|.+... +..|-+|++|++|+|+++..+... .++ |++|+
T Consensus 289 -------------------rgG~~ik~kndtrk~Yl~sr~FklDllsiLPldllY~~~G~~--------p~w---R~~R~ 338 (815)
T KOG0499|consen 289 -------------------RGGDIIKDKNDTRKHYLTSRKFKLDLLSILPLDLLYLFFGFN--------PMW---RANRM 338 (815)
T ss_pred -------------------eCceEEEechHHHHHHHHhhhhhhhHHhhhhHHHHHHHhccc--------hhh---hhhhH
Confidence 6899999988887 778999999999999987654321 122 66666
Q ss_pred HHHHHhHHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhHHHhhcccCCCCCcceecCCCccccc
Q 008614 168 IRTYFLFTDAIEVSGVIADATWGIFAFYVLLYLQSGHMFGALWYYYAIEKATDCWREASENHTGRSHSYVFCNKCFGDYK 247 (559)
Q Consensus 168 ~R~~~l~~~~~~~~~~i~~~~~~~~~~~l~~~~l~~H~~aC~w~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 247 (559)
+++-.++.....+...+......+.+.-+-..++++|+.||+||+.+- | +|.+.+.
T Consensus 339 lK~~sF~e~~~~Le~i~s~~y~~RV~rT~~YmlyilHinacvYY~~Sa--------------------y----qglG~~r 394 (815)
T KOG0499|consen 339 LKYTSFFEFNHHLESIMSKAYIYRVIRTTGYLLYILHINACVYYWASA--------------------Y----QGLGTTR 394 (815)
T ss_pred HHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhhhHHHHHHHHh--------------------h----cccccce
Confidence 666665554444444333333334444444445569999999999873 1 2345678
Q ss_pred ccccccCCCCCCCCccccchhhhhhhcCccccCchhHHHHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHH
Q 008614 248 LLNDSCPISTGNTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLF 327 (559)
Q Consensus 248 Wi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~f 327 (559)
|+.+. -...|++|+|||+.|++|+|- ...|+|..|++|..+.-+.|+++|
T Consensus 395 WVydg-----------------------------~Gn~YiRCyyfa~kt~~tiG~-~P~P~~~~E~Vf~~~~w~mGVFvF 444 (815)
T KOG0499|consen 395 WVYDG-----------------------------EGNEYIRCYYFAVKTLITIGG-LPEPQTLFEIVFQLLNWFMGVFVF 444 (815)
T ss_pred eEEcC-----------------------------CCCceeeehhhHHHHHHHhcC-CCCcchHHHHHHHHHHHHHHHHHH
Confidence 98541 234699999999999999996 677899999999999999999999
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhcCCCHHHHHhcCCHHHHHHHHHHH
Q 008614 328 VFLIGRMQ----SETTRAHKINQKLRQIKHWKHFKDISTFVRAKIREAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHF 403 (559)
Q Consensus 328 a~iig~i~----s~~~~~~~~~~~~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~~~~ll~~Lp~~Lr~~i~~~l 403 (559)
|.+||.|- +.+++.+++++.|++.-.||+..++|++.|+|||.+|+|.|.+++..||.++++.||..||.+++..+
T Consensus 445 slliGQmRDvi~aAt~nq~~fr~~mD~tl~ym~~~~i~kevqnRVr~WyeyTW~sQr~LDEs~ll~~LP~klq~dlAi~V 524 (815)
T KOG0499|consen 445 SLLIGQMRDVIGAATANQNYFRACMDDTLAYMNNYSIPKEVQNRVRTWYEYTWDSQRMLDESDLLKTLPTKLQLDLAIDV 524 (815)
T ss_pred HHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhhhccccHHHHHHhcchhheeeeeEEe
Confidence 99999998 45667789999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE-cCceEEEEEecCCCeeehhh
Q 008614 404 GRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS-KSKLIGLKRQEDGNYCGEEI 482 (559)
Q Consensus 404 ~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~-~~~~~~~~~l~~G~~fGe~~ 482 (559)
+..++.++.+|++|+.+.+.+++.+++.++|.|||+|+++||.+.+||+|..|+|+|.. .+|.+++.++.+|++|||++
T Consensus 525 ~y~~lSKVqLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQVlGGp~~~~Vl~tL~~GsVFGEIS 604 (815)
T KOG0499|consen 525 NYSILSKVQLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQVLGGPDGTKVLVTLKAGSVFGEIS 604 (815)
T ss_pred ehhhhhHHHHhhhhHHHHHHHHHHHhhceeecCCceeeecccccceeEEeecceEEEecCCCCCEEEEEecccceeeeee
Confidence 99999999999999999999999999999999999999999999999999999999876 66667889999999999997
Q ss_pred hhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhh
Q 008614 483 IDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRF 529 (559)
Q Consensus 483 l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~ 529 (559)
++ +.++ ++. |+++|+|.++|.|++|+++|+.+++..||+-
T Consensus 605 LL-aigG----~nR--RTAnV~a~Gf~nLfvL~KkdLneil~~YP~s 644 (815)
T KOG0499|consen 605 LL-AIGG----GNR--RTANVVAHGFANLFVLDKKDLNEILVHYPDS 644 (815)
T ss_pred ee-eecC----CCc--cchhhhhcccceeeEecHhHHHHHHHhCccH
Confidence 73 2222 233 9999999999999999999999999999985
No 6
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.46 E-value=6.4e-13 Score=125.75 Aligned_cols=194 Identities=15% Similarity=0.200 Sum_probs=118.1
Q ss_pred hhHHHHHHHHHHHHHHHhhhceeccchhhhhhhhhhhhcccccCCceeecChhhHhhhhhhhhhhhcccccceeeeeecc
Q 008614 69 VIRSILDFLKLLHISSELREADKKENQRKKFKHLWQQLKNFKKGGREVLEDPMVRMWMLFFIDGLAILPIPQVLVIFPIR 148 (559)
Q Consensus 69 ~~~~~~d~~f~~Di~l~f~t~y~~~~~~~~~~~~~~~~~~~~~~~g~~v~d~~~I~~~~F~~Dlls~lP~~~i~~~~~~~ 148 (559)
++|.+.|++|.+|+++++++... .+.+... +.|.++|+++++|..........+
T Consensus 1 ~~~~~~~~~f~~e~~l~~~~~~~--------------------~~~~y~~------~~~~~~d~~~~~~~~~~~~~~~~~ 54 (200)
T PF00520_consen 1 ILEIIFDVIFILEIVLRFFALGF--------------------KRRRYFR------SWWNWFDFISVIPSIVSVILRSYG 54 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCC--------------------G-GCCCC------SHHHHHHHHHHHHHCCHHCCHCSS
T ss_pred CChHHHHHHHHHHHHHHHHHhcc--------------------HHHHHhc------Chhhcccccccccccccccccccc
Confidence 46889999999999999997654 1011111 568999999999985543221111
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHhHHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhHHHhhcc
Q 008614 149 DTGFSTAMTFFVLQYLLRVIRTYFLFTDAIEVSGVIADATWGIFAFYVLLYLQSGHMFGALWYYYAIEKATDCWREASEN 228 (559)
Q Consensus 149 ~~~~~~~~~~~~l~rl~Rl~R~~~l~~~~~~~~~~i~~~~~~~~~~~l~~~~l~~H~~aC~w~~i~~~~~~~~~~~~~~~ 228 (559)
...........+++|++|++|+.+..+.+.+....+. .....+...+..++++.|+.||+++.+.....+.|+
T Consensus 55 ~~~~~~~~~~~~~l~~~R~l~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~------ 127 (200)
T PF00520_consen 55 SASAQSLLRIFRLLRLLRLLRLLRRFRSLRRLLRALI-RSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCC------ 127 (200)
T ss_dssp --HHCHCHHHHHHHHHHHHHHHHHTTTSHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS----------
T ss_pred cccccceEEEEEeeccccccccccccccccccccccc-cccccccccccccccccccccchhheeccccccccc------
Confidence 0000011234445555555555555544443322222 222344555566667799999999888742111100
Q ss_pred cCCCCCcceecCCCcccccccccccCCCCCCCCccccchhhhhhhcCccccCchhHHHHHHHHHHhHhhcccccCCCCcC
Q 008614 229 HTGRSHSYVFCNKCFGDYKLLNDSCPISTGNTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSAFGQDLETSD 308 (559)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~sWi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Yl~slYwa~~T~tTvGyGdi~p~ 308 (559)
...+.... . ..+.+..+.|..|+||++.++|+.|+||+.+.
T Consensus 128 ----------------~~~~~~~~--------~---------------~~~~~~f~~~~~s~~~~~~~~t~~~~~~~~~~ 168 (200)
T PF00520_consen 128 ----------------DPTWDSEN--------D---------------IYGYENFDSFGESLYWLFQTMTGEGWGDVMPS 168 (200)
T ss_dssp -------------------SS---------------------------SSTHHHHSSHHHHHHHHHHHHTTTTCCCCHHH
T ss_pred ----------------cccccccc--------c---------------cccccccccccccccccccccccCCccccccc
Confidence 00000000 0 01334567799999999999999999999997
Q ss_pred -----ChhhHHHH-HHHHHHHHHHHHHHHHHH
Q 008614 309 -----DVGENIFA-IWMTIYGVVLFVFLIGRM 334 (559)
Q Consensus 309 -----t~~E~~~~-i~~mi~G~~~fa~iig~i 334 (559)
+..|.++. ++..+.+.++++.++|.|
T Consensus 169 ~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 169 CMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp HHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 89999999 556666668889998875
No 7
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.44 E-value=5e-13 Score=136.98 Aligned_cols=182 Identities=16% Similarity=0.207 Sum_probs=111.6
Q ss_pred eehhhhHHHHHHHHHHHHHHHhhhceeccchhhhhhhhhhhhcccccCCceeecChhhHhhhhhhhhhhhcccccceeee
Q 008614 65 ITATVIRSILDFLKLLHISSELREADKKENQRKKFKHLWQQLKNFKKGGREVLEDPMVRMWMLFFIDGLAILPIPQVLVI 144 (559)
Q Consensus 65 ~~~~~~~~~~d~~f~~Di~l~f~t~y~~~~~~~~~~~~~~~~~~~~~~~g~~v~d~~~I~~~~F~~Dlls~lP~~~i~~~ 144 (559)
..+.+++.++-+.|-+..+++|-.+ |+ +-+.+.+| -=++|++|++||++=...
T Consensus 240 p~l~~vE~vCi~WFT~E~llR~~~~---P~------------------k~~F~k~p------LNIIDllAIlPFYielll 292 (477)
T KOG3713|consen 240 PILTYVETVCIAWFTFEYLLRFLVA---PN------------------KLEFFKSP------LNIIDLLAILPFYLELLL 292 (477)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHcC---ch------------------HHHHHhCc------chHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999853 21 11222222 335899999999643211
Q ss_pred eeccCCCCcc--h-HHHHHHHHHHHHHHHHHhHHHHHH---hhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcch
Q 008614 145 FPIRDTGFST--A-MTFFVLQYLLRVIRTYFLFTDAIE---VSGVIADATWGIFAFYVLLYLQSGHMFGALWYYYAIEKA 218 (559)
Q Consensus 145 ~~~~~~~~~~--~-~~~~~l~rl~Rl~R~~~l~~~~~~---~~~~i~~~~~~~~~~~l~~~~l~~H~~aC~w~~i~~~~~ 218 (559)
......+..+ . ..+++.+|++|++|++||.|.-.- ....++.+ ...+..+++...+.+-++|-+-|++-...
T Consensus 293 ~~~~~~~~~~l~~~~~vvrvlR~lRI~RI~KLaRhS~GLr~lg~Tlr~S-~~ElglLllfL~~GI~iFStlvY~~Ek~~- 370 (477)
T KOG3713|consen 293 TLFGGESLKELENAGLVVRVLRVLRILRIFKLARHSTGLRTLGLTLRRS-YRELGLLLLFLAVGIVIFSTLVYFAEKDE- 370 (477)
T ss_pred HHhccchHHHHhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhcC-
Confidence 1111100111 1 256777777777777777663222 21112222 11222222222223566666666643210
Q ss_pred hhhHHHhhcccCCCCCcceecCCCcccccccccccCCCCCCCCccccchhhhhhhcCccccCchhHHHHHHHHHHhHhhc
Q 008614 219 TDCWREASENHTGRSHSYVFCNKCFGDYKLLNDSCPISTGNTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLS 298 (559)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sWi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Yl~slYwa~~T~t 298 (559)
+ +++ ++.-=.|++||++|||
T Consensus 371 ------------------------~----------------~~~--------------------FtSIPa~~WWaiVTMT 390 (477)
T KOG3713|consen 371 ------------------------P----------------DTK--------------------FTSIPAGFWWAVVTMT 390 (477)
T ss_pred ------------------------C----------------CCC--------------------CccccchhheeeEEEe
Confidence 0 000 1111248999999999
Q ss_pred ccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008614 299 AFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQ 335 (559)
Q Consensus 299 TvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~ 335 (559)
||||||.+|+|..-++++..+.+.|+++-|.=|..|-
T Consensus 391 TVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv 427 (477)
T KOG3713|consen 391 TVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIV 427 (477)
T ss_pred eecccCccccccchHHHHHHHHHHhHHHhhcchHhHh
Confidence 9999999999999999999999999999998666655
No 8
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.44 E-value=4.2e-12 Score=124.44 Aligned_cols=117 Identities=14% Similarity=0.134 Sum_probs=103.9
Q ss_pred HHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCceEEEEEecCCCeeehhh
Q 008614 405 RNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSKLIGLKRQEDGNYCGEEI 482 (559)
Q Consensus 405 ~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~~~~~~~~l~~G~~fGe~~ 482 (559)
.+.++.+++|+.++++.++.+....+.+.|.+|+.|+++||.++.+|+|.+|.|+++. +++...+..+.+|++||+.+
T Consensus 6 ~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~~~~~~i~~~~~g~~~g~~~ 85 (236)
T PRK09392 6 LIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASSQDRETTLAILRPVSTFILAA 85 (236)
T ss_pred HHHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcCCCceEEEEEeCCCchhhhHH
Confidence 3578899999999999999999999999999999999999999999999999999654 45555678999999999987
Q ss_pred hhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614 483 IDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 531 (559)
Q Consensus 483 l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 531 (559)
++ ... + +.++++|.++|+++.+++++|.+++.++|.+..
T Consensus 86 ~~---~~~-~------~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~ 124 (236)
T PRK09392 86 VV---LDA-P------YLMSARTLTRSRVLMIPAELVREAMSEDPGFMR 124 (236)
T ss_pred Hh---CCC-C------CceEEEEcCceEEEEEeHHHHHHHHHHCHHHHH
Confidence 63 322 1 778999999999999999999999999999864
No 9
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.38 E-value=8.6e-12 Score=106.44 Aligned_cols=109 Identities=20% Similarity=0.312 Sum_probs=94.4
Q ss_pred CCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cC-ceEEEEEecCCCeeehhhhhhhhcc
Q 008614 413 KFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KS-KLIGLKRQEDGNYCGEEIIDWAENQ 489 (559)
Q Consensus 413 ~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~-~~~~~~~l~~G~~fGe~~l~~~l~~ 489 (559)
+|+.++++.+..++..++.+.+.+|+.|+.+|+..+.+|+|.+|.+.+.. .+ +...+..+.+|++||+..+. .+.
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~--~~~ 78 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGELALL--GNG 78 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcChHHHh--cCC
Confidence 47889999999999999999999999999999999999999999999654 22 23456789999999998663 122
Q ss_pred CCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614 490 SSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 531 (559)
Q Consensus 490 ~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 531 (559)
+ +..+++|.+.|+++.+++++|.++++++|++..
T Consensus 79 ~--------~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~ 112 (115)
T cd00038 79 P--------RSATVRALTDSELLVLPRSDFRRLLQEYPELAR 112 (115)
T ss_pred C--------CCceEEEcCceEEEEEeHHHHHHHHHHCcHhHH
Confidence 2 678899999999999999999999999999854
No 10
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.36 E-value=1e-11 Score=101.90 Aligned_cols=88 Identities=16% Similarity=0.226 Sum_probs=75.2
Q ss_pred eEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCce-EEEEEecCCCeeehhhhhhhhccCCCCCCCCCcccEEEEcc
Q 008614 431 PVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSKL-IGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHT 507 (559)
Q Consensus 431 ~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~~~-~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~ 507 (559)
++.|.+|++|+++|+..+++|||.+|.+.+.. .++. ..+..+++|++||+..+. .+.+ +..+++|.+
T Consensus 1 ~~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g~~~~~--~~~~--------~~~~~~a~~ 70 (91)
T PF00027_consen 1 EKTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFGEIELL--TGKP--------SPFTVIALT 70 (91)
T ss_dssp -EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEESGHHHH--HTSB--------BSSEEEESS
T ss_pred CeEECCCCEEEeCCCcCCEEEEEEECceEEEeceecceeeeecceeeeccccceeec--CCCc--------cEEEEEEcc
Confidence 36799999999999999999999999999655 3343 346799999999998664 2222 789999999
Q ss_pred eEEEEEEeHHHHHHHHHhcHh
Q 008614 508 NVEGFTLKTDELKHGIALHRR 528 (559)
Q Consensus 508 ~~~l~~L~~~~f~~ll~~~P~ 528 (559)
+|+++.|++++|.++++++|+
T Consensus 71 ~~~~~~i~~~~~~~~~~~~p~ 91 (91)
T PF00027_consen 71 DSEVLRIPREDFLQLLQQDPE 91 (91)
T ss_dssp SEEEEEEEHHHHHHHHHHSHH
T ss_pred CEEEEEEeHHHHHHHHHhCcC
Confidence 999999999999999999996
No 11
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.34 E-value=3.5e-11 Score=115.70 Aligned_cols=108 Identities=15% Similarity=0.238 Sum_probs=92.8
Q ss_pred CCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--c-CceEEEEEecCCCeeehhhhhhhhccCC
Q 008614 415 ENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--K-SKLIGLKRQEDGNYCGEEIIDWAENQSS 491 (559)
Q Consensus 415 ~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~-~~~~~~~~l~~G~~fGe~~l~~~l~~~~ 491 (559)
+.++++.++.++..++.+.|.+|+.|+.+|+.++.+|+|.+|.++++. . ++...+..+++|++||+..++ ...
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~---~~~- 81 (211)
T PRK11753 6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLF---EEG- 81 (211)
T ss_pred CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehhhc---cCC-
Confidence 457899999999999999999999999999999999999999999653 3 344556789999999998663 221
Q ss_pred CCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614 492 SHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 531 (559)
Q Consensus 492 ~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 531 (559)
+++..+++|.++|+++.+++++|.++++++|++..
T Consensus 82 -----~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~ 116 (211)
T PRK11753 82 -----QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILM 116 (211)
T ss_pred -----CCceEEEEEcCcEEEEEEcHHHHHHHHHHCHHHHH
Confidence 12677899999999999999999999999999853
No 12
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.27 E-value=1e-10 Score=100.35 Aligned_cols=110 Identities=18% Similarity=0.294 Sum_probs=93.8
Q ss_pred CCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE---cCceEEEEEecCCCeeehhhhhhhhcc
Q 008614 413 KFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS---KSKLIGLKRQEDGNYCGEEIIDWAENQ 489 (559)
Q Consensus 413 ~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~---~~~~~~~~~l~~G~~fGe~~l~~~l~~ 489 (559)
+|.+++++.++.++..++.+.|.+|++|+++|+..+.+|||.+|.+.+.. +++...+..+.+|++||+..+. ...
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~--~~~ 78 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGELALL--TNS 78 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechhhhc--cCC
Confidence 47889999999999999999999999999999999999999999999654 3334467799999999998662 011
Q ss_pred CCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhh
Q 008614 490 SSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFN 530 (559)
Q Consensus 490 ~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~ 530 (559)
+ .++..++.|.+.|+++.++.+++.+....+|.+.
T Consensus 79 ~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 113 (120)
T smart00100 79 R------RAASATAVALELATLLRIDFRDFLQLLQENPQLL 113 (120)
T ss_pred C------cccceEEEEEeeEEEEccCHHHHHHHHHHhHHHH
Confidence 1 1267889999999999999999999999999874
No 13
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.26 E-value=5.4e-12 Score=129.04 Aligned_cols=120 Identities=22% Similarity=0.360 Sum_probs=104.2
Q ss_pred HHhHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEc----CceEEEEEecCCCe
Q 008614 402 HFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSK----SKLIGLKRQEDGNY 477 (559)
Q Consensus 402 ~l~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~----~~~~~~~~l~~G~~ 477 (559)
.-+.++|+++|+|+++|++.+..++..++...|..|++|+++|+.++..|+|.+|.|.|... +....+..+++||+
T Consensus 268 ~~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd~ 347 (732)
T KOG0614|consen 268 EQYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKGDY 347 (732)
T ss_pred HHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhccccch
Confidence 45678899999999999999999999999999999999999999999999999999998762 22334679999999
Q ss_pred eehhhhhhhhccCCCCCCCCCcccEEEEcce-EEEEEEeHHHHHHHHHhcHhhhh
Q 008614 478 CGEEIIDWAENQSSSHGHLPISTRTIIAHTN-VEGFTLKTDELKHGIALHRRFNQ 531 (559)
Q Consensus 478 fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~-~~l~~L~~~~f~~ll~~~P~~~~ 531 (559)
|||-++. ... .|++++.|... ++++.|+|+.|.+++-...++.+
T Consensus 348 FGE~al~---~ed-------vRtAniia~~~gv~cl~lDresF~~liG~l~~l~e 392 (732)
T KOG0614|consen 348 FGERALL---GED-------VRTANIIAQAPGVECLTLDRESFKKLIGDLEELKE 392 (732)
T ss_pred hhHHHhh---ccC-------ccchhhhccCCCceEEEecHHHHHHhcccHHHhhh
Confidence 9999884 322 28999999988 99999999999999887777753
No 14
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.26 E-value=4.7e-12 Score=129.51 Aligned_cols=119 Identities=20% Similarity=0.274 Sum_probs=105.5
Q ss_pred HHHHHhHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008614 399 VKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 478 (559)
Q Consensus 399 i~~~l~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~f 478 (559)
=..++-++.+++..|++|++.+.+++++.+|.+..|.+|+.|++|||+++++|.+.+|+++|...+. .+..+++|..|
T Consensus 147 ~~k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~~g~--ll~~m~~gtvF 224 (732)
T KOG0614|consen 147 GAKQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSREGK--LLGKMGAGTVF 224 (732)
T ss_pred cHHHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEeeCCe--eeeccCCchhh
Confidence 3456667888899999999999999999999999999999999999999999999999999987544 57899999999
Q ss_pred ehhhhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhh
Q 008614 479 GEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRF 529 (559)
Q Consensus 479 Ge~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~ 529 (559)
||.++++ +.+ |++||+|+++|.+|.|+|+-|+.++..-..-
T Consensus 225 GELAILy--nct--------RtAsV~alt~~~lWaidR~vFq~IM~~tg~~ 265 (732)
T KOG0614|consen 225 GELAILY--NCT--------RTASVRALTDVRLWAIDREVFQAIMMRTGLE 265 (732)
T ss_pred hHHHHHh--CCc--------chhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 9998864 333 9999999999999999999999998765443
No 15
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.21 E-value=2.3e-11 Score=119.55 Aligned_cols=109 Identities=16% Similarity=0.234 Sum_probs=97.3
Q ss_pred HHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhh
Q 008614 405 RNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIID 484 (559)
Q Consensus 405 ~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~ 484 (559)
.+.+++.-+|++++++.+.++...|.++.+..|+.|+++||.++.+|+|.+|+++|+..+. .+..+++|..|||.++.
T Consensus 121 ~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv~~~--~v~~~~~g~sFGElALm 198 (368)
T KOG1113|consen 121 EEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYVNGT--YVTTYSPGGSFGELALM 198 (368)
T ss_pred HHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEECCe--EEeeeCCCCchhhhHhh
Confidence 4567788899999999999999999999999999999999999999999999999987644 57899999999999985
Q ss_pred hhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHh
Q 008614 485 WAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIAL 525 (559)
Q Consensus 485 ~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~ 525 (559)
+ +. +|.+|++|.+++.+|.|++..|..++-.
T Consensus 199 y--n~--------PRaATv~a~t~~klWgldr~SFrrIi~~ 229 (368)
T KOG1113|consen 199 Y--NP--------PRAATVVAKSLKKLWGLDRTSFRRIIMK 229 (368)
T ss_pred h--CC--------CcccceeeccccceEEEeeceeEEEeec
Confidence 2 33 3999999999999999999999876643
No 16
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=99.21 E-value=5.7e-12 Score=123.05 Aligned_cols=44 Identities=18% Similarity=0.340 Sum_probs=39.4
Q ss_pred HHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHH
Q 008614 289 CLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIG 332 (559)
Q Consensus 289 slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig 332 (559)
|++||++|||||||||..|.|..-+++..++.+.|+...|.-+-
T Consensus 397 aFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVP 440 (507)
T KOG1545|consen 397 AFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVP 440 (507)
T ss_pred cceEEEEEEEeeccccceecccCceehhhHHhhhhheEeccccc
Confidence 89999999999999999999999999999999999877665433
No 17
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.20 E-value=4.6e-10 Score=109.87 Aligned_cols=113 Identities=13% Similarity=0.123 Sum_probs=93.0
Q ss_pred hcCCcCCCCCCHHHHHHHHhcCee-EEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCc-eEEEEEecCCCeeehhhh
Q 008614 408 LGQMQKFENWEDYSLDHLCGCLKP-VFFSERTTIISEGESIHEMLFVLEGQISIYS--KSK-LIGLKRQEDGNYCGEEII 483 (559)
Q Consensus 408 l~~v~~F~~~~~~~l~~l~~~l~~-~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~~-~~~~~~l~~G~~fGe~~l 483 (559)
+++.+.|..++++.++.|....+. +.|.+||.|+++||.++++|+|.+|.|+++. .+| ...+..+.+|++||+..+
T Consensus 15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~~~~ 94 (235)
T PRK11161 15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFDAI 94 (235)
T ss_pred ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceeccccc
Confidence 445555557999999999988864 6799999999999999999999999999665 334 445667899999998655
Q ss_pred hhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614 484 DWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 531 (559)
Q Consensus 484 ~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 531 (559)
. ... ...+++|.++|+++.+++++|.+++.++|++..
T Consensus 95 ~---~~~--------~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~~~~ 131 (235)
T PRK11161 95 G---SGQ--------HPSFAQALETSMVCEIPFETLDDLSGKMPKLRQ 131 (235)
T ss_pred c---CCC--------CcceEEEeccEEEEEEEHHHHHHHHHHChHHHH
Confidence 2 222 345799999999999999999999999999854
No 18
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.20 E-value=5.4e-10 Score=106.98 Aligned_cols=112 Identities=17% Similarity=0.224 Sum_probs=94.5
Q ss_pred cCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCc-eEEEEEecCCCeeehhhhhh
Q 008614 409 GQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSK-LIGLKRQEDGNYCGEEIIDW 485 (559)
Q Consensus 409 ~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~~-~~~~~~l~~G~~fGe~~l~~ 485 (559)
.+.+.|...+++....+....+.+.+++|+.|+++||.++.+|+|.+|.+.++. .+| ...+..+++|++||+.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~l~- 81 (214)
T COG0664 3 KENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELALL- 81 (214)
T ss_pred ccccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHHHh-
Confidence 455677777888888888899999999999999999999999999999999655 333 4456789999999999774
Q ss_pred hhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhh
Q 008614 486 AENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFN 530 (559)
Q Consensus 486 ~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~ 530 (559)
... ++.++++|.++|+++.+++++|.+++.+.|.+.
T Consensus 82 --~~~-------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~l~ 117 (214)
T COG0664 82 --GGD-------PRSASAVALTDVEVLEIPRKDFLELLAESPKLA 117 (214)
T ss_pred --cCC-------CccceEEEcceEEEEEecHHHHHHHHhhCcHHH
Confidence 221 288999999999999999999999987788874
No 19
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.16 E-value=2.6e-10 Score=120.89 Aligned_cols=112 Identities=13% Similarity=0.203 Sum_probs=97.1
Q ss_pred HHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCceEEEEEecCCCeeehhh
Q 008614 405 RNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSKLIGLKRQEDGNYCGEEI 482 (559)
Q Consensus 405 ~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~~~~~~~~l~~G~~fGe~~ 482 (559)
.+.++++++|++++++.++.++..++.+.|.+||+|+++||.++.+|+|.+|.|++.. .+|+..+..+++|++||+.
T Consensus 7 ~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge~~l~~l~~Gd~fG~~- 85 (413)
T PLN02868 7 VEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEESRPEFLLKRYDYFGYG- 85 (413)
T ss_pred HHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCcEEEEEeCCCCEeehh-
Confidence 3567899999999999999999999999999999999999999999999999999755 3445567789999999975
Q ss_pred hhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHh
Q 008614 483 IDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRR 528 (559)
Q Consensus 483 l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~ 528 (559)
+ .+.+ +.++++|.++|+++.|++++|..+...++.
T Consensus 86 l---~~~~--------~~~~~~A~~d~~v~~ip~~~~~~~~~~~~~ 120 (413)
T PLN02868 86 L---SGSV--------HSADVVAVSELTCLVLPHEHCHLLSPKSIW 120 (413)
T ss_pred h---CCCC--------cccEEEECCCEEEEEEcHHHHhhhcccccc
Confidence 4 2322 788999999999999999999988766544
No 20
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.15 E-value=4.4e-10 Score=116.91 Aligned_cols=115 Identities=18% Similarity=0.278 Sum_probs=103.2
Q ss_pred HHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhh
Q 008614 405 RNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIID 484 (559)
Q Consensus 405 ~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~ 484 (559)
.+++.++|.|..++++.+.+|...++...|.+||.|+..|.+.+.+|+|.+|.|++..++|. .+..+..|+.||-.++.
T Consensus 6 ~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~~~g~-v~~~~~~gdlFg~~~l~ 84 (610)
T COG2905 6 DQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRSDGGE-VLDRLAAGDLFGFSSLF 84 (610)
T ss_pred HHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEcCCCe-eeeeeccCccccchhhc
Confidence 46788999999999999999999999999999999999999999999999999999988886 68899999999998774
Q ss_pred hhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhh
Q 008614 485 WAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFN 530 (559)
Q Consensus 485 ~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~ 530 (559)
... . ....+.|.+++-+|.|+++.|.+++.++|+++
T Consensus 85 ---~~~-----~--~~~~~~aeedsl~y~lp~s~F~ql~~~n~~f~ 120 (610)
T COG2905 85 ---TEL-----N--KQRYMAAEEDSLCYLLPKSVFMQLMEENPEFA 120 (610)
T ss_pred ---ccC-----C--CcceeEeeccceEEecCHHHHHHHHHhCcHHH
Confidence 221 1 34568888899999999999999999999994
No 21
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.15 E-value=4.1e-10 Score=109.63 Aligned_cols=99 Identities=13% Similarity=0.172 Sum_probs=84.2
Q ss_pred HHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCc-eEEEEEecCCCeeehhhhhhhhccCCCCCCCCCc
Q 008614 423 DHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSK-LIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPIS 499 (559)
Q Consensus 423 ~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~~-~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r 499 (559)
.++....+.+.|.+|+.|+++||.++.+|+|.+|.|+++. .+| ...+..+.+|++||+.+++ .+. ++
T Consensus 25 ~~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~~~~---~~~-------~~ 94 (226)
T PRK10402 25 FDVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEIELI---DKD-------HE 94 (226)
T ss_pred HHHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEeehhh---cCC-------CC
Confidence 3577788999999999999999999999999999999654 334 4456789999999998663 322 17
Q ss_pred ccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614 500 TRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 531 (559)
Q Consensus 500 ~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 531 (559)
..+++|.++|+++.+++++|.+++.++|.+..
T Consensus 95 ~~~~~A~~~~~i~~i~~~~~~~ll~~~p~~~~ 126 (226)
T PRK10402 95 TKAVQAIEECWCLALPMKDCRPLLLNDALFLR 126 (226)
T ss_pred CccEEEeccEEEEEEEHHHHHHHHhcCHHHHH
Confidence 78899999999999999999999999999864
No 22
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.14 E-value=3.6e-10 Score=90.73 Aligned_cols=55 Identities=18% Similarity=0.362 Sum_probs=47.9
Q ss_pred HHHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008614 285 KLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETT 339 (559)
Q Consensus 285 ~Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~~~ 339 (559)
.|..|+||+++|+||+||||+.|.+..+++++++.+++|..++++.++.+++...
T Consensus 24 ~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 24 SFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp SHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3677999999999999999999999999999999999999999999999886543
No 23
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=99.05 E-value=6.2e-09 Score=107.54 Aligned_cols=88 Identities=15% Similarity=0.226 Sum_probs=70.4
Q ss_pred hhHHHHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCC
Q 008614 282 FPKKLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETT-RAHKINQKLRQIKHWKHFKDI 360 (559)
Q Consensus 282 ~~~~Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~~~-~~~~~~~~~~~i~~~m~~~~l 360 (559)
-+.-|..|++|++.|+|||||||.+|+|..-++.+.++-++|..+||.--|.++|-.+ +.+|.+ .=++|-++++.
T Consensus 266 ~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALKVQeq~----RQKHf~rrr~p 341 (654)
T KOG1419|consen 266 EFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALKVQEQH----RQKHFNRRRNP 341 (654)
T ss_pred cchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhhhHHHH----HHHHHHhhcch
Confidence 4567999999999999999999999999999999999999999999998888885332 222211 12567777887
Q ss_pred CHHHHHHHHHHHH
Q 008614 361 STFVRAKIREAKR 373 (559)
Q Consensus 361 p~~L~~rv~~y~~ 373 (559)
-..|.+-.-+||.
T Consensus 342 AA~LIQc~WR~ya 354 (654)
T KOG1419|consen 342 AASLIQCAWRYYA 354 (654)
T ss_pred HHHHHHHHHHHHh
Confidence 7888777766664
No 24
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.02 E-value=3.8e-10 Score=116.08 Aligned_cols=114 Identities=11% Similarity=0.176 Sum_probs=82.9
Q ss_pred HHHHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH-------------
Q 008614 284 KKLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETTRAHKI----NQ------------- 346 (559)
Q Consensus 284 ~~Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~~~~~~~~----~~------------- 346 (559)
..|..|+|+-++||+||||||+..+|...+.|.++..+.|..+||--+-.|..+.-+.+++ +.
T Consensus 287 ltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiielignr~kyggeyk~ehgkkhivvcghi 366 (1103)
T KOG1420|consen 287 LTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGEYKAEHGKKHIVVCGHI 366 (1103)
T ss_pred chhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHccccccCceeehhcCCeeEEEecce
Confidence 4589999999999999999999999999999999999999999998888887655433322 11
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhcCCC-HHHHHhcCCHHHHHHHHHHHhHHHhcCCcCCCC
Q 008614 347 KLRQIKHWKHFKDISTFVRAKIREAKRENLLLKHDIH-IDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFEN 416 (559)
Q Consensus 347 ~~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~-~~~ll~~Lp~~Lr~~i~~~l~~~~l~~v~~F~~ 416 (559)
..+.+.+|++ ++..+....+| |--++...||.|.-| .+++....++.+|++
T Consensus 367 tyesvshflk----------------dflhedrddvdvevvflhr~~pdlele---glfkrhft~veffqg 418 (1103)
T KOG1420|consen 367 TYESVSHFLK----------------DFLHEDRDDVDVEVVFLHRISPDLELE---GLFKRHFTQVEFFQG 418 (1103)
T ss_pred eHHHHHHHHH----------------HHhhccccccceEEEEEecCCCCcchH---HHHhhheeeEEEecc
Confidence 0233444433 23333333445 335678889988755 566677788888875
No 25
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=98.94 E-value=1.2e-08 Score=96.60 Aligned_cols=87 Identities=15% Similarity=0.193 Sum_probs=71.6
Q ss_pred CCEEEccCCccceEEEEEEeEEEEEE--cC-ceEEEEEecCCCeeehhhhhhhhccCCCCCCCCCcccEEEEcceEEEEE
Q 008614 437 RTTIISEGESIHEMLFVLEGQISIYS--KS-KLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFT 513 (559)
Q Consensus 437 ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~-~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~ 513 (559)
|+.|+++||..+.+|+|.+|.|+++. .+ ++..+..+++|++||+..++ ... ..++..+++|.++|+++.
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G~~~~~---~~~-----~~~~~~~~~A~~~~~v~~ 72 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFGVLSLI---TGH-----RSDRFYHAVAFTRVELLA 72 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEeeeeeec---cCC-----CCccceEEEEecceEEEE
Confidence 78999999999999999999999654 43 44457899999999998663 221 111457799999999999
Q ss_pred EeHHHHHHHHHhcHhhhh
Q 008614 514 LKTDELKHGIALHRRFNQ 531 (559)
Q Consensus 514 L~~~~f~~ll~~~P~~~~ 531 (559)
+++++|.+++.++|++..
T Consensus 73 i~~~~~~~l~~~~p~l~~ 90 (193)
T TIGR03697 73 VPIEQVEKAIEEDPDLSM 90 (193)
T ss_pred eeHHHHHHHHHHChHHHH
Confidence 999999999999999854
No 26
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=98.94 E-value=2.1e-09 Score=105.84 Aligned_cols=117 Identities=14% Similarity=0.288 Sum_probs=103.3
Q ss_pred HHHhHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE-cCceEEEEEecCCCeee
Q 008614 401 LHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS-KSKLIGLKRQEDGNYCG 479 (559)
Q Consensus 401 ~~l~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~-~~~~~~~~~l~~G~~fG 479 (559)
..+|.+.|+++|+++.+.......++..+.+..|.+|+.|+.+|+.++.+|+|.+|+|.+.. .+| ..+ .++.|++||
T Consensus 235 rkMy~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~~~-v~v-kl~~~dyfg 312 (368)
T KOG1113|consen 235 RKMYEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKRDG-VEV-KLKKGDYFG 312 (368)
T ss_pred hhhhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhccCC-eEE-Eechhhhcc
Confidence 46788999999999999999999999999999999999999999999999999999999765 334 344 999999999
Q ss_pred hhhhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhh
Q 008614 480 EEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRF 529 (559)
Q Consensus 480 e~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~ 529 (559)
|.++. .+.+ |.+||.|.+...+..++++.|+.++.-.-++
T Consensus 313 e~al~--~~~p--------r~Atv~a~~~~kc~~~dk~~ferllgpc~di 352 (368)
T KOG1113|consen 313 ELALL--KNLP--------RAATVVAKGRLKCAKLDKPRFERLLGPCQDI 352 (368)
T ss_pred hHHHH--hhch--------hhceeeccCCceeeeeChHHHHHHhhHHHHH
Confidence 99875 3333 8999999999999999999999998766554
No 27
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=98.93 E-value=1.3e-08 Score=99.30 Aligned_cols=96 Identities=17% Similarity=0.098 Sum_probs=80.5
Q ss_pred HHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCc-eEEEEEecCCCeeehhhhhhhhccCCCCCCCCCc
Q 008614 423 DHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSK-LIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPIS 499 (559)
Q Consensus 423 ~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~~-~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r 499 (559)
..+....+.+.|.+|+.|+++||.++.+|+|.+|.|+++. .+| +..+..+.+|++||+.. ..+ +
T Consensus 32 ~~~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~~-----~~~--------~ 98 (230)
T PRK09391 32 GHAGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLES-----GST--------H 98 (230)
T ss_pred ccccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceecccC-----CCc--------C
Confidence 3566778889999999999999999999999999999654 334 44566889999999631 111 5
Q ss_pred ccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614 500 TRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 531 (559)
Q Consensus 500 ~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 531 (559)
..+++|.++|+++.+++++|.+++.++|++..
T Consensus 99 ~~~~~A~~ds~v~~i~~~~f~~l~~~~p~l~~ 130 (230)
T PRK09391 99 RFTAEAIVDTTVRLIKRRSLEQAAATDVDVAR 130 (230)
T ss_pred CeEEEEcCceEEEEEEHHHHHHHHhhChHHHH
Confidence 78899999999999999999999999999864
No 28
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=98.83 E-value=7.2e-08 Score=91.97 Aligned_cols=81 Identities=17% Similarity=0.221 Sum_probs=67.2
Q ss_pred cCeeEEeCCCCEEEccCC--ccceEEEEEEeEEEEEE--cC-ceEEEEEecCCCeeehhhhhhhhccCCCCCCCCCcccE
Q 008614 428 CLKPVFFSERTTIISEGE--SIHEMLFVLEGQISIYS--KS-KLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRT 502 (559)
Q Consensus 428 ~l~~~~~~~ge~I~~~Gd--~~~~~yfI~~G~v~v~~--~~-~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~t 502 (559)
..+...|.+|+.|+++|| .++.+|+|.+|.|+++. .+ ++..+..+.+|++||+.++. ..+ ++.+
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~~~~---~~~--------~~~~ 73 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEEALA---GAE--------RAYF 73 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechHHhc---CCC--------CCce
Confidence 467788999999999999 77999999999999654 33 44556788999999997552 322 6788
Q ss_pred EEEcceEEEEEEeHHHH
Q 008614 503 IIAHTNVEGFTLKTDEL 519 (559)
Q Consensus 503 v~A~~~~~l~~L~~~~f 519 (559)
+.|.++|+++.+++++|
T Consensus 74 ~~A~~~~~v~~i~~~~~ 90 (202)
T PRK13918 74 AEAVTDSRIDVLNPALM 90 (202)
T ss_pred EEEcCceEEEEEEHHHc
Confidence 99999999999998876
No 29
>PRK10537 voltage-gated potassium channel; Provisional
Probab=98.45 E-value=3e-06 Score=88.55 Aligned_cols=52 Identities=17% Similarity=0.276 Sum_probs=48.5
Q ss_pred HHHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008614 285 KLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQS 336 (559)
Q Consensus 285 ~Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s 336 (559)
.+..|+||++.|+||+||||+.|.|...+++++++++.|..+|++.++.+..
T Consensus 168 s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~ 219 (393)
T PRK10537 168 SLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFG 219 (393)
T ss_pred CHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567999999999999999999999999999999999999999999998874
No 30
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=98.43 E-value=1.7e-08 Score=99.86 Aligned_cols=45 Identities=11% Similarity=0.301 Sum_probs=40.8
Q ss_pred HHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHH
Q 008614 287 LRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLI 331 (559)
Q Consensus 287 l~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~ii 331 (559)
-.++++.++||||.||||.+|.|...++|.-++-+.|+.+.|.-+
T Consensus 358 PaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPV 402 (632)
T KOG4390|consen 358 PAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPV 402 (632)
T ss_pred cHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccc
Confidence 358899999999999999999999999999999999998888643
No 31
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=98.04 E-value=6.7e-06 Score=89.80 Aligned_cols=102 Identities=17% Similarity=0.115 Sum_probs=84.8
Q ss_pred HHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEE-EEE-cCceE-EEEEecCCCeeehhhhhhhhccCCCCCCC
Q 008614 420 YSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQIS-IYS-KSKLI-GLKRQEDGNYCGEEIIDWAENQSSSHGHL 496 (559)
Q Consensus 420 ~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~-v~~-~~~~~-~~~~l~~G~~fGe~~l~~~l~~~~~~~~~ 496 (559)
.+++.+=..+.-....||+.++++||.++++|+|..|.++ +.. .++++ .+..++.||.+|+.... .+.+
T Consensus 499 p~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k~~i~~EygrGd~iG~~E~l--t~~~------ 570 (1158)
T KOG2968|consen 499 PFLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGKKEIVGEYGRGDLIGEVEML--TKQP------ 570 (1158)
T ss_pred HHHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCccchhhhhccCcceeehhHHh--hcCC------
Confidence 3666666778888999999999999999999999999999 444 33332 46789999999998442 2433
Q ss_pred CCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614 497 PISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 531 (559)
Q Consensus 497 ~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 531 (559)
|..|+.|+.++|+.+|+..-|..+..+||.+-.
T Consensus 571 --R~tTv~AvRdSelariPe~l~~~ik~ryP~v~~ 603 (1158)
T KOG2968|consen 571 --RATTVMAVRDSELARIPEGLLNFIKLRYPQVVT 603 (1158)
T ss_pred --ccceEEEEeehhhhhccHHHHHHHHHhccHHHH
Confidence 889999999999999999999999999999854
No 32
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=98.00 E-value=0.00058 Score=70.18 Aligned_cols=54 Identities=11% Similarity=0.038 Sum_probs=50.1
Q ss_pred hhHHHHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008614 282 FPKKLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQ 335 (559)
Q Consensus 282 ~~~~Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~ 335 (559)
....|+.|++....|..++||||++|.|.--+..+++.-++|++.-|.+++-++
T Consensus 284 ~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvis 337 (489)
T KOG3684|consen 284 VTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIA 337 (489)
T ss_pred hHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHH
Confidence 445689999999999999999999999999999999999999999999998887
No 33
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.64 E-value=0.00027 Score=72.26 Aligned_cols=53 Identities=11% Similarity=0.214 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhHhhcccccCC--CCcCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008614 284 KKLLRCLHWGLQKLSAFGQDL--ETSDDVGENIFAIWMTIYGVVLFVFLIGRMQS 336 (559)
Q Consensus 284 ~~Yl~slYwa~~T~tTvGyGd--i~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s 336 (559)
..+..+++||+.|+||+|||. ++|....-.+..++=+++|.++.|+++|-+=+
T Consensus 83 ~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfa 137 (336)
T PF01007_consen 83 NSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFA 137 (336)
T ss_dssp TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357789999999999999998 67777777777888899999999999988754
No 34
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=97.40 E-value=0.00019 Score=76.39 Aligned_cols=54 Identities=11% Similarity=0.287 Sum_probs=50.0
Q ss_pred HHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008614 286 LLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETT 339 (559)
Q Consensus 286 Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~~~ 339 (559)
+..|+|++.+++||+|||+++|.|...++++|+..++|.-++..++++++....
T Consensus 116 f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~ 169 (433)
T KOG1418|consen 116 FSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLA 169 (433)
T ss_pred cchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 556999999999999999999999999999999999999999999999995544
No 35
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels.
Probab=97.38 E-value=0.00013 Score=57.35 Aligned_cols=32 Identities=16% Similarity=0.077 Sum_probs=29.3
Q ss_pred hhhccCCChHHHHHHHHHHHHHHHHHhhccee
Q 008614 13 IIVLYRKAIAAAIENKRYLLLNVIAMILDPFF 44 (559)
Q Consensus 13 ~~ii~P~s~~~~~Wd~~~~~~~~~~~~~~P~~ 44 (559)
.+||||.|+++.+||.+++++++++++++|+.
T Consensus 36 ~~IIHP~S~fR~~WD~~m~~~~~~~~~~iP~~ 67 (77)
T PF08412_consen 36 PWIIHPFSKFRFYWDLIMLILLLYNLIIIPFR 67 (77)
T ss_pred CeEEcCCccHHHHHHHHHHHHHHHHHHHHhhh
Confidence 47999999999999999999999999998864
No 36
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.11 E-value=0.0043 Score=68.66 Aligned_cols=113 Identities=14% Similarity=0.070 Sum_probs=84.2
Q ss_pred HHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE---cCceEEEEEecCCCeeehh-hhhhhhccCCCCCCCCCcc
Q 008614 425 LCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS---KSKLIGLKRQEDGNYCGEE-IIDWAENQSSSHGHLPIST 500 (559)
Q Consensus 425 l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~---~~~~~~~~~l~~G~~fGe~-~l~~~l~~~~~~~~~~~r~ 500 (559)
++.+++...+..||+|++.|+..+.+|.+.+|.+++.- +++...+..+.+|+-|-.. ++ ++.. +....+.++
T Consensus 111 L~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~~~~g~~~llk~V~~G~~~tSllSi---Ld~l-~~~ps~~~~ 186 (1158)
T KOG2968|consen 111 LDRHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIRNGDGKEYLLKTVPPGGSFTSLLSI---LDSL-PGFPSLSRT 186 (1158)
T ss_pred echhhhhhcccCCceeccCCCCCceEEEEeccceEEEecCCCCceeeEeeccCCCchHhHHHH---HHhc-cCCCcccce
Confidence 44788888999999999999999999999999999654 3333456799999877664 33 2322 222223467
Q ss_pred cEEEEcceEEEEEEeHHHHHHHHHhcHhhhhhhHHHHHhHHH
Q 008614 501 RTIIAHTNVEGFTLKTDELKHGIALHRRFNQSVSFLQLFWRF 542 (559)
Q Consensus 501 ~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~~~~~~~~~~r~ 542 (559)
-.++|.++|.+..++.+.|.+...+||+-. .+.+|..+.|+
T Consensus 187 i~akA~t~~tv~~~p~~sF~~~~~k~P~s~-iriiQvvmTRL 227 (1158)
T KOG2968|consen 187 IAAKAATDCTVARIPYTSFRESFHKNPESS-IRIIQVVMTRL 227 (1158)
T ss_pred eeeeeecCceEEEeccchhhhhhccChHHH-HHHHHHHHHHH
Confidence 779999999999999999999999999953 23333334443
No 37
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=97.03 E-value=0.038 Score=48.96 Aligned_cols=129 Identities=14% Similarity=0.144 Sum_probs=96.0
Q ss_pred CCCHHHHHHHHhc-CeeEEeCCCCEEEccCC-ccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhhhhhccCCCC
Q 008614 416 NWEDYSLDHLCGC-LKPVFFSERTTIISEGE-SIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSH 493 (559)
Q Consensus 416 ~~~~~~l~~l~~~-l~~~~~~~ge~I~~~Gd-~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~ 493 (559)
+.|...-++++.+ .+.....+|+.-.-||. +.+.+-++++|.+.|..++. .+..+.+-++..--... ....+ .
T Consensus 14 ~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~~g~--fLH~I~p~qFlDSPEW~-s~~~s-~- 88 (153)
T PF04831_consen 14 KVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSCDGR--FLHYIYPYQFLDSPEWE-SLRPS-E- 88 (153)
T ss_pred CCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEECCE--eeEeecccccccChhhh-ccccC-C-
Confidence 4677777778777 56677899999999985 56899999999999987654 46777887776644331 01111 1
Q ss_pred CCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhhhhHHHHHhHHHHHHHHHHHHHh
Q 008614 494 GHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQSVSFLQLFWRFKTFKQMQMKRR 553 (559)
Q Consensus 494 ~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~~~~~~~~~~r~~~~~~~~~~~~ 553 (559)
+ ..-..|+.|.+.|..+..+|+.+..++.+.|.++ .+|...-.+..+.|-.+++++
T Consensus 89 ~--~~FQVTitA~~~Cryl~W~R~kL~~~l~~~~~L~--~vF~~liGkDI~~KLy~ln~~ 144 (153)
T PF04831_consen 89 D--DKFQVTITAEEDCRYLCWPREKLYLLLAKDPFLA--AVFSNLIGKDIAEKLYSLNEK 144 (153)
T ss_pred C--CeEEEEEEEcCCcEEEEEEHHHHHHHHhhCHHHH--HHHHHHHHHHHHHHHHHhhhH
Confidence 1 1246789999999999999999999999999984 466666677777777666654
No 38
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=96.89 E-value=0.035 Score=52.44 Aligned_cols=101 Identities=14% Similarity=0.113 Sum_probs=76.0
Q ss_pred HHHHHHHhcCeeEEeCCCCEE-EccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhhhhhccCCCCCCCCC
Q 008614 420 YSLDHLCGCLKPVFFSERTTI-ISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPI 498 (559)
Q Consensus 420 ~~l~~l~~~l~~~~~~~ge~I-~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~ 498 (559)
...+.+...-++..+.+|..+ ..+....+.++++.+|.|.+...++ ..+.+..+...||-.... .+. .
T Consensus 13 ~L~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsirr~d~-ll~~t~~aP~IlGl~~~~---~~~-------~ 81 (207)
T PRK11832 13 KLDKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLRREEN-VLIGITQAPYIMGLADGL---MKN-------D 81 (207)
T ss_pred HHHHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEEecCC-eEEEeccCCeEeeccccc---CCC-------C
Confidence 355667777788889999997 4444444679999999999965555 457788888899965331 221 0
Q ss_pred cccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614 499 STRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 531 (559)
Q Consensus 499 r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 531 (559)
.....+|.++|+++.+++++|.++++++.=+++
T Consensus 82 ~~~~l~ae~~c~~~~i~~~~~~~iie~~~LW~~ 114 (207)
T PRK11832 82 IPYKLISEGNCTGYHLPAKQTITLIEQNQLWRD 114 (207)
T ss_pred ceEEEEEcCccEEEEeeHHHHHHHHHHhchHHH
Confidence 346799999999999999999999998866543
No 39
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=95.98 E-value=0.0086 Score=59.17 Aligned_cols=50 Identities=10% Similarity=0.152 Sum_probs=39.6
Q ss_pred HHHHHHHHhHhhcccccCCCCcCC-------hhhH-HHHHHHHHHHHHHHHHHHHHHH
Q 008614 286 LLRCLHWGLQKLSAFGQDLETSDD-------VGEN-IFAIWMTIYGVVLFVFLIGRMQ 335 (559)
Q Consensus 286 Yl~slYwa~~T~tTvGyGdi~p~t-------~~E~-~~~i~~mi~G~~~fa~iig~i~ 335 (559)
|..|+|+.+.|+||+|+||.+|-. ..++ .++.+.+++|..+++..++-+.
T Consensus 187 yfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~Nllv 244 (350)
T KOG4404|consen 187 YFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLV 244 (350)
T ss_pred hhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHH
Confidence 777999999999999999998832 3344 4567778889888887777665
No 40
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=95.90 E-value=0.0018 Score=63.85 Aligned_cols=50 Identities=12% Similarity=0.322 Sum_probs=42.9
Q ss_pred HHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008614 286 LLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQ 335 (559)
Q Consensus 286 Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~ 335 (559)
..-|+|||.+.+||+|||-.+|.|+.-++|+|+.-++|+-+--..+.+++
T Consensus 81 F~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~g 130 (350)
T KOG4404|consen 81 FAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIG 130 (350)
T ss_pred cCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHH
Confidence 44599999999999999999999999999999999999866555555554
No 41
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=95.36 E-value=0.11 Score=52.89 Aligned_cols=55 Identities=13% Similarity=0.348 Sum_probs=41.7
Q ss_pred HHHHHHHHhHhhcccccCCCCc--CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008614 286 LLRCLHWGLQKLSAFGQDLETS--DDVGENIFAIWMTIYGVVLFVFLIGRMQSETTR 340 (559)
Q Consensus 286 Yl~slYwa~~T~tTvGyGdi~p--~t~~E~~~~i~~mi~G~~~fa~iig~i~s~~~~ 340 (559)
...|+-|++-|=||+|||-=.+ .-..-.+..++=+++|+++-|+++|.+-+-.++
T Consensus 113 f~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiar 169 (400)
T KOG3827|consen 113 FTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIAR 169 (400)
T ss_pred hhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5568889999999999997443 334445555677889999999999998755443
No 42
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=94.06 E-value=0.12 Score=55.57 Aligned_cols=111 Identities=13% Similarity=0.180 Sum_probs=85.2
Q ss_pred HHHhcCCcCCCCCCHHHHHHHHhcCeeEEe-CCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhh
Q 008614 405 RNLLGQMQKFENWEDYSLDHLCGCLKPVFF-SERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEII 483 (559)
Q Consensus 405 ~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~-~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l 483 (559)
.+++.+.|-|.+++-...++|+..|-..+. ..|.+|...|+.-+..+.|++|.|+|...+|+ ...+.-|+-||-.--
T Consensus 280 LeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~PdGk--~e~l~mGnSFG~~PT 357 (1283)
T KOG3542|consen 280 LEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVKPDGK--REELKMGNSFGAEPT 357 (1283)
T ss_pred HHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEecCCCc--eEEeecccccCCCCC
Confidence 467788999999999999999998876554 68999999999999999999999998887774 468888999995421
Q ss_pred hhhhccCCCCCCCCCcccEE-EEcceEEEEEEeHHHHHHHHHhcH
Q 008614 484 DWAENQSSSHGHLPISTRTI-IAHTNVEGFTLKTDELKHGIALHR 527 (559)
Q Consensus 484 ~~~l~~~~~~~~~~~r~~tv-~A~~~~~l~~L~~~~f~~ll~~~P 527 (559)
.+.+ . -.--+ .-+.+|+..++...|+-.++..-.
T Consensus 358 ---~dkq-y------m~G~mRTkVDDCqFVciaqqDycrIln~ve 392 (1283)
T KOG3542|consen 358 ---PDKQ-Y------MIGEMRTKVDDCQFVCIAQQDYCRILNTVE 392 (1283)
T ss_pred ---cchh-h------hhhhhheecccceEEEeehhhHHHHHHHHH
Confidence 0100 0 00012 245789999999999998886543
No 43
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=93.63 E-value=0.013 Score=62.30 Aligned_cols=47 Identities=11% Similarity=0.209 Sum_probs=38.8
Q ss_pred HHHHHHHHHhHhhcccccCCCCcCChhhH--------HHHHHHHHHHHHHHHHHH
Q 008614 285 KLLRCLHWGLQKLSAFGQDLETSDDVGEN--------IFAIWMTIYGVVLFVFLI 331 (559)
Q Consensus 285 ~Yl~slYwa~~T~tTvGyGdi~p~t~~E~--------~~~i~~mi~G~~~fa~ii 331 (559)
-|+.|+|++++|+||+|+||++|.+...+ ....+..++|....+.+.
T Consensus 242 ~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 242 SFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred eeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence 47789999999999999999999988766 567777777777766555
No 44
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=92.57 E-value=4.9 Score=45.93 Aligned_cols=86 Identities=13% Similarity=0.069 Sum_probs=45.7
Q ss_pred ehhhhHHHHHHHHHHHHHHHhhh-ceeccchhhhhhhhhhhhcccccCCceeecChhhHhhhhhhhhhhhccc--cccee
Q 008614 66 TATVIRSILDFLKLLHISSELRE-ADKKENQRKKFKHLWQQLKNFKKGGREVLEDPMVRMWMLFFIDGLAILP--IPQVL 142 (559)
Q Consensus 66 ~~~~~~~~~d~~f~~Di~l~f~t-~y~~~~~~~~~~~~~~~~~~~~~~~g~~v~d~~~I~~~~F~~Dlls~lP--~~~i~ 142 (559)
.+.+-|++.-++|+..+.++--. |.+ -|+ .....+.|=.+|.+-++- +|+++
T Consensus 1157 FltlsnyIFtaIfV~Em~lKVVALGl~---------------------fge----~aYl~ssWN~LDgflv~vsviDilv 1211 (1956)
T KOG2302|consen 1157 FLTLSNYIFTAIFVVEMTLKVVALGLY---------------------FGE----QAYLRSSWNVLDGFLVAVSVIDILV 1211 (1956)
T ss_pred EEEecchHHHHHHHHHHHHHHHhhhhc---------------------cch----HHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34456789999999999988553 322 121 112225576666543221 12222
Q ss_pred eeeeccCCCCcchHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q 008614 143 VIFPIRDTGFSTAMTFFVLQYLLRVIRTYFLFTDAIEVSG 182 (559)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~l~rl~Rl~R~~~l~~~~~~~~~ 182 (559)
.. ...+ ..+++..+|.+|++|-+|-+|.+.+..+
T Consensus 1212 s~----asa~--g~kILgVlrvLRlLRtlRpLRviSra~g 1245 (1956)
T KOG2302|consen 1212 SQ----ASAG--GAKILGVLRVLRLLRTLRPLRVISRAPG 1245 (1956)
T ss_pred HH----hhhh--hHHHHHHHHHHHHHHHhhHHHHHhhccc
Confidence 11 0011 1356666677777777777776665543
No 45
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=92.40 E-value=0.7 Score=48.87 Aligned_cols=49 Identities=8% Similarity=0.070 Sum_probs=33.5
Q ss_pred HHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008614 287 LRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQ 335 (559)
Q Consensus 287 l~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~ 335 (559)
..|+|+.++|.+||||||-.|.-..-.++..+++-++.++.---+..++
T Consensus 219 f~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~ip~q~~~l~ 267 (1087)
T KOG3193|consen 219 FTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGLIPKQLDELG 267 (1087)
T ss_pred eeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhccHHHHHHHH
Confidence 3589999999999999999997666666555554444444333333333
No 46
>COG4709 Predicted membrane protein [Function unknown]
Probab=89.52 E-value=1.9 Score=39.73 Aligned_cols=77 Identities=13% Similarity=0.123 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh--hcCCCHHHHHhcC--CHHHHHHHHHHHhHHHhcCCcCCCCCCHHHH
Q 008614 347 KLRQIKHWKHFKDISTFVRAKIREAKRENLLL--KHDIHIDSLVSDL--PDDTAKQVKLHFGRNLLGQMQKFENWEDYSL 422 (559)
Q Consensus 347 ~~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~--~~~~~~~~ll~~L--p~~Lr~~i~~~l~~~~l~~v~~F~~~~~~~l 422 (559)
-++++++|++ ++|++.++.+..||+-.+.+ ..|.+|+++..+| |.++-.|+..+.-.+-.+.-|-+++.+...+
T Consensus 6 fL~eL~~yL~--~Lp~~~r~e~m~dyeehF~~a~~~GksE~EI~~~LG~P~eiA~ei~s~~~~k~~~~~~~~~n~~~aii 83 (195)
T COG4709 6 FLNELEQYLE--GLPREERREIMYDYEEHFREAQEAGKSEEEIAKDLGDPKEIAAEILSERGIKKEEVKPTQKNVRRAII 83 (195)
T ss_pred HHHHHHHHHH--hCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHhCCHHHHHHHHHHHccchHHhccCcccchHHHHH
Confidence 4678888887 89999999999999877754 3577899999987 6778888887776677776777777766544
Q ss_pred HHH
Q 008614 423 DHL 425 (559)
Q Consensus 423 ~~l 425 (559)
..+
T Consensus 84 ~~~ 86 (195)
T COG4709 84 ALI 86 (195)
T ss_pred HHH
Confidence 433
No 47
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=88.79 E-value=0.52 Score=51.03 Aligned_cols=104 Identities=14% Similarity=0.166 Sum_probs=75.9
Q ss_pred CHHHHHHHHHHHhHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEE
Q 008614 392 PDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKR 471 (559)
Q Consensus 392 p~~Lr~~i~~~l~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~ 471 (559)
|+.||......--...+++...|.|+-..-++.++...+.+.++.+.++++.|+.+++.|++++|.|-+.. . .
T Consensus 23 ~~~~~t~~~~rN~~~~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~g--q-----i 95 (1283)
T KOG3542|consen 23 PPHLRTPDDIRNVYEQLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVEG--Q-----I 95 (1283)
T ss_pred CcccCChhhhhhHHHHHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEeec--c-----e
Confidence 34444333322223467788899999999999999999999999999999999999999999999987642 1 3
Q ss_pred ecCCCeeehhhhhhhhccCCCCCCCCCcccEEEEcceEEEEEEe
Q 008614 472 QEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLK 515 (559)
Q Consensus 472 l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~ 515 (559)
+-+-.+||... .++ |+.+.--+..+|+.+++
T Consensus 96 ~mp~~~fgkr~-----g~~--------r~~nclllq~semivid 126 (1283)
T KOG3542|consen 96 YMPYGCFGKRT-----GQN--------RTHNCLLLQESEMIVID 126 (1283)
T ss_pred ecCcccccccc-----ccc--------cccceeeecccceeeee
Confidence 33444566421 111 77778888888888874
No 48
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=87.02 E-value=3.4 Score=38.42 Aligned_cols=56 Identities=14% Similarity=0.291 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh--hcCCCHHHHHhcC--CHHHHHHHHHHH
Q 008614 346 QKLRQIKHWKHFKDISTFVRAKIREAKRENLLL--KHDIHIDSLVSDL--PDDTAKQVKLHF 403 (559)
Q Consensus 346 ~~~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~--~~~~~~~~ll~~L--p~~Lr~~i~~~l 403 (559)
+-+++++++++ ++|++-++++.+||+-.... ..|.+|+++.++| |.++-+++..+.
T Consensus 5 efL~~L~~~L~--~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~~ 64 (181)
T PF08006_consen 5 EFLNELEKYLK--KLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAEY 64 (181)
T ss_pred HHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence 45788999997 69999999999999987764 4578899999997 667777776554
No 49
>PLN03223 Polycystin cation channel protein; Provisional
Probab=85.29 E-value=35 Score=41.05 Aligned_cols=23 Identities=13% Similarity=-0.214 Sum_probs=17.0
Q ss_pred eehhhhHHHHHHHHHHHHHHHhh
Q 008614 65 ITATVIRSILDFLKLLHISSELR 87 (559)
Q Consensus 65 ~~~~~~~~~~d~~f~~Di~l~f~ 87 (559)
..|.++|++.-++.+.=|++-|.
T Consensus 1213 SfWNwLEIl~IlLS~AAIvLYFv 1235 (1634)
T PLN03223 1213 SGWNYVDFASIGLHLATIMMWFV 1235 (1634)
T ss_pred cchHHHHHHHHHHHHHHHHHHHH
Confidence 46888888887777777776554
No 50
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=77.87 E-value=4.7 Score=30.53 Aligned_cols=44 Identities=16% Similarity=0.218 Sum_probs=32.6
Q ss_pred EEeCCCCEEEccCCccc-eEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008614 432 VFFSERTTIISEGESIH-EMLFVLEGQISIYSKSKLIGLKRQEDGNYC 478 (559)
Q Consensus 432 ~~~~~ge~I~~~Gd~~~-~~yfI~~G~v~v~~~~~~~~~~~l~~G~~f 478 (559)
..++||+..-..-.... +++++++|++++..+++ ...+++|+.+
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~~~~---~~~l~~Gd~~ 47 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTVDGE---RVELKPGDAI 47 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEEETTE---EEEEETTEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEEEccE---EeEccCCEEE
Confidence 45778887665554445 89999999999885443 4688998874
No 51
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=73.47 E-value=8.5 Score=30.00 Aligned_cols=41 Identities=20% Similarity=0.212 Sum_probs=30.1
Q ss_pred CCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeee
Q 008614 435 SERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCG 479 (559)
Q Consensus 435 ~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fG 479 (559)
.||..=..... ++..+|++|+|.+...+|. ...+++||.|=
T Consensus 15 ~pg~~~~~~~~--~E~~~vleG~v~it~~~G~--~~~~~aGD~~~ 55 (74)
T PF05899_consen 15 TPGKFPWPYPE--DEFFYVLEGEVTITDEDGE--TVTFKAGDAFF 55 (74)
T ss_dssp ECEEEEEEESS--EEEEEEEEEEEEEEETTTE--EEEEETTEEEE
T ss_pred CCceeEeeCCC--CEEEEEEEeEEEEEECCCC--EEEEcCCcEEE
Confidence 45554333322 8899999999999987775 47999999863
No 52
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=72.07 E-value=1.5e+02 Score=31.94 Aligned_cols=12 Identities=17% Similarity=0.263 Sum_probs=6.1
Q ss_pred cCCHHHHHHHHH
Q 008614 390 DLPDDTAKQVKL 401 (559)
Q Consensus 390 ~Lp~~Lr~~i~~ 401 (559)
++|..|+..+..
T Consensus 260 kV~~~lq~rVik 271 (536)
T KOG0500|consen 260 KVPKALQTRVIK 271 (536)
T ss_pred cccHHHHHHHHH
Confidence 455555555543
No 53
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=69.06 E-value=2.3e+02 Score=33.07 Aligned_cols=41 Identities=17% Similarity=0.209 Sum_probs=27.3
Q ss_pred hcCCHHHHHHHHHHHhHHHhc----CCcCCCCCCHHHHHHHHhcC
Q 008614 389 SDLPDDTAKQVKLHFGRNLLG----QMQKFENWEDYSLDHLCGCL 429 (559)
Q Consensus 389 ~~Lp~~Lr~~i~~~l~~~~l~----~v~~F~~~~~~~l~~l~~~l 429 (559)
+++|+.||.++..++...+=. +-.+++.+|++...+++..+
T Consensus 327 ~~lp~~lq~ri~~y~~~~~~~~~~~~~~~l~~Lp~~Lr~~i~~~l 371 (823)
T PLN03192 327 NRLPPRLKDQILAYMCLRFKAESLNQQQLIDQLPKSICKSICQHL 371 (823)
T ss_pred cCCCHHHHHHHHHHHHHHHhhccccHHHHHHHcCHHHHHHHHHHH
Confidence 569999999999887554322 22345567777776666554
No 54
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=67.45 E-value=12 Score=31.67 Aligned_cols=44 Identities=16% Similarity=0.311 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHHHHHHhhh----------hcCCCHHHHHhcCCHHHHHHHHHH
Q 008614 359 DISTFVRAKIREAKRENLLL----------KHDIHIDSLVSDLPDDTAKQVKLH 402 (559)
Q Consensus 359 ~lp~~L~~rv~~y~~~~~~~----------~~~~~~~~ll~~Lp~~Lr~~i~~~ 402 (559)
-||+++|..|...+...-.. ....|...++..||+.||.+|...
T Consensus 52 ALP~diR~EVl~qe~~~~~~~~~~~~~~~~~~~~d~asflatl~p~LR~evL~~ 105 (108)
T PF14377_consen 52 ALPPDIREEVLAQERRERRRQERQQNARQHPQEMDNASFLATLPPELRREVLLD 105 (108)
T ss_pred hCCHHHHHHHHHHHHHHHHHhhhccccccCCCCCCHHHHHHhCCHHHHHHHhhc
Confidence 68999999999988764322 122346789999999999999764
No 55
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=64.72 E-value=67 Score=29.19 Aligned_cols=57 Identities=14% Similarity=0.078 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008614 157 TFFVLQYLLRVIRTYFLFTDAIEVSGVIADATWGIFAFYVLLYLQSGHMFGALWYYYA 214 (559)
Q Consensus 157 ~~~~l~rl~Rl~R~~~l~~~~~~~~~~i~~~~~~~~~~~l~~~~l~~H~~aC~w~~i~ 214 (559)
.++++.|++|+.|..+.++..........+.. ...+..+..+++..+..+|..+.-.
T Consensus 66 ~~l~~~R~l~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~a~~~~~lf~~~ 122 (200)
T PF00520_consen 66 RLLRLLRLLRLLRRFRSLRRLLRALIRSFPDL-FKFILLLFIVLLFFACIGYQLFGGS 122 (200)
T ss_dssp HHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred Eeeccccccccccccccccccccccccccccc-cccccccccccccccchhheecccc
Confidence 44566666666666664443322221122222 2445555555555566666555554
No 56
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=64.25 E-value=2.4e+02 Score=32.18 Aligned_cols=72 Identities=13% Similarity=0.178 Sum_probs=45.1
Q ss_pred cccccCCCCcCChh------hHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH-HHHHHHHHHHHHHHHhCCCCHHHHH
Q 008614 298 SAFGQDLETSDDVG------ENIFAIWMTIYGVVLFVFLIGRMQSE----TTRA-HKINQKLRQIKHWKHFKDISTFVRA 366 (559)
Q Consensus 298 tTvGyGdi~p~t~~------E~~~~i~~mi~G~~~fa~iig~i~s~----~~~~-~~~~~~~~~i~~~m~~~~lp~~L~~ 366 (559)
.|+|+||....... -.+|.+++.++.+.+.-.+|+-|+.. .... .+.+.+ ...---|-++.+|+.++.
T Consensus 601 ftig~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s~~~Wk~Q-~A~~iL~lErs~p~~~r~ 679 (782)
T KOG3676|consen 601 FTIGMGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQESEKEWKLQ-WAATILMLERSLPPALRK 679 (782)
T ss_pred HhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHH-HHHHHHHHHhcCCHHHHH
Confidence 78999998764332 35566667777777888888888832 2222 233222 122334678899999988
Q ss_pred HHHH
Q 008614 367 KIRE 370 (559)
Q Consensus 367 rv~~ 370 (559)
+-+.
T Consensus 680 ~~~~ 683 (782)
T KOG3676|consen 680 RFRL 683 (782)
T ss_pred HHhh
Confidence 7443
No 57
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=62.38 E-value=1.4e+02 Score=32.81 Aligned_cols=50 Identities=12% Similarity=0.140 Sum_probs=33.7
Q ss_pred HhcCCHHHHHHHHHHHhHHHh-----cCCcCCCCCCHHHHHHHHhcCeeEEeCCC
Q 008614 388 VSDLPDDTAKQVKLHFGRNLL-----GQMQKFENWEDYSLDHLCGCLKPVFFSER 437 (559)
Q Consensus 388 l~~Lp~~Lr~~i~~~l~~~~l-----~~v~~F~~~~~~~l~~l~~~l~~~~~~~g 437 (559)
+.+.|..|-+.+..++-..+- ..-..+.-||.+....++-++....|...
T Consensus 499 L~evPK~LsERVMDYvVSTWaMtkGiDTeKVL~~CPKDMkADICVHLNRKVFnEH 553 (971)
T KOG0501|consen 499 LYEVPKGLSERVMDYVVSTWAMTKGIDTEKVLGYCPKDMKADICVHLNRKVFNEH 553 (971)
T ss_pred HHhccHHHHHHHHHHHHHHhhhhcCcCHHHHhhhCccccccceeeecchhhhccC
Confidence 567899999988887655432 22234556777777788888877766543
No 58
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=61.36 E-value=61 Score=28.15 Aligned_cols=69 Identities=9% Similarity=0.070 Sum_probs=43.1
Q ss_pred CeeEEeCCCCEEEccCCccceEEEEEEeEEEEE-EcCceEEEEEecCCCeeehhhhhhhhccCCCCCCCCCcccEEEEcc
Q 008614 429 LKPVFFSERTTIISEGESIHEMLFVLEGQISIY-SKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHT 507 (559)
Q Consensus 429 l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~-~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~ 507 (559)
+....+.||...-.--....++++|++|++++. ..+++ ...+.+||.+-- +.. ....+++.+
T Consensus 37 ~~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i~~g~--~~~L~aGD~i~~-------~~~--------~~H~~~N~e 99 (125)
T PRK13290 37 FHETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDLATGE--VHPIRPGTMYAL-------DKH--------DRHYLRAGE 99 (125)
T ss_pred EEEEEECCCCcccceeCCCEEEEEEEeCEEEEEEcCCCE--EEEeCCCeEEEE-------CCC--------CcEEEEcCC
Confidence 344567888755432112247999999999987 43342 479999998642 221 234455557
Q ss_pred eEEEEEE
Q 008614 508 NVEGFTL 514 (559)
Q Consensus 508 ~~~l~~L 514 (559)
+++++.+
T Consensus 100 ~~~~l~v 106 (125)
T PRK13290 100 DMRLVCV 106 (125)
T ss_pred CEEEEEE
Confidence 7777765
No 59
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=54.87 E-value=39 Score=29.29 Aligned_cols=49 Identities=14% Similarity=0.186 Sum_probs=36.2
Q ss_pred hcCeeEEeCCCCEE-EccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008614 427 GCLKPVFFSERTTI-ISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 478 (559)
Q Consensus 427 ~~l~~~~~~~ge~I-~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~f 478 (559)
.......+.||+.+ ...-...++.|+|++|...+..+++. ..+++|+.+
T Consensus 36 ~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~~~~---~~v~~gd~~ 85 (127)
T COG0662 36 YSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIGGEE---VEVKAGDSV 85 (127)
T ss_pred EEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEECCEE---EEecCCCEE
Confidence 44666778888886 44444578999999999998776543 577887764
No 60
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=54.56 E-value=41 Score=30.52 Aligned_cols=48 Identities=8% Similarity=0.124 Sum_probs=32.0
Q ss_pred eeEEe-CCCCEE-EccCCccceEEEEEEeEEEEEE-cCceEEEEEecCCCee
Q 008614 430 KPVFF-SERTTI-ISEGESIHEMLFVLEGQISIYS-KSKLIGLKRQEDGNYC 478 (559)
Q Consensus 430 ~~~~~-~~ge~I-~~~Gd~~~~~yfI~~G~v~v~~-~~~~~~~~~l~~G~~f 478 (559)
+..++ .||+.- +...+ .+++|++++|.+.+.. .+|......+++|++|
T Consensus 30 ~v~~vgGpn~R~d~H~~~-tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~f 80 (159)
T TIGR03037 30 MVTVVGGPNARTDFHDDP-GEEFFYQLKGEMYLKVTEEGKREDVPIREGDIF 80 (159)
T ss_pred EEEEeCCCCCCcccccCC-CceEEEEEcceEEEEEEcCCcEEEEEECCCCEE
Confidence 33444 454443 44434 7899999999999643 3344456799999886
No 61
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=51.64 E-value=24 Score=31.03 Aligned_cols=75 Identities=8% Similarity=0.104 Sum_probs=48.5
Q ss_pred hhHHHHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 008614 282 FPKKLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETTRAHKINQKLRQIKHWKHFK 358 (559)
Q Consensus 282 ~~~~Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~~~~~~~~~~~~~~i~~~m~~~ 358 (559)
.......++++.+.+++. +-++..|.+...+++.+++.+.+.++.++--|++++...... .+...+.+++..+..
T Consensus 41 ~~~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~-~~~~i~sl~dL~~~~ 115 (148)
T PF00060_consen 41 WRFSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVPK-YEPPIDSLEDLANSG 115 (148)
T ss_dssp HHHHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-HTSS-SSHHHHHTHS
T ss_pred CcccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-cCCCCCCHHHHHHCC
Confidence 345566788888877776 556799999999999999999999999999999986654322 122244555554444
No 62
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=50.53 E-value=35 Score=22.28 Aligned_cols=26 Identities=12% Similarity=0.162 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhCCCC-----HHHHHHHHHHH
Q 008614 347 KLRQIKHWKHFKDIS-----TFVRAKIREAK 372 (559)
Q Consensus 347 ~~~~i~~~m~~~~lp-----~~L~~rv~~y~ 372 (559)
+..+++++++.+++| .+|.+|+.+|+
T Consensus 5 ~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 5 TVAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp HHHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 356789999999998 56999998874
No 63
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=45.21 E-value=75 Score=23.40 Aligned_cols=39 Identities=18% Similarity=0.264 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHH--HHHHHHHHHHHHHHH
Q 008614 318 WMTIYGVVLFVFLIGRMQSET--TRA--HKINQKLRQIKHWKH 356 (559)
Q Consensus 318 ~~mi~G~~~fa~iig~i~s~~--~~~--~~~~~~~~~i~~~m~ 356 (559)
...+++.+.|+.++-.+-..+ ++. +++++|+|.+-+-+.
T Consensus 14 ~l~vl~~~~Ftl~IRri~~~s~~kkq~~~~~eqKLDrIIeLLE 56 (58)
T PF13314_consen 14 ILIVLFGASFTLFIRRILINSNAKKQDVDSMEQKLDRIIELLE 56 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHc
Confidence 555566666776666665322 222 257788887766543
No 64
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=45.10 E-value=1.1e+02 Score=34.80 Aligned_cols=42 Identities=12% Similarity=0.096 Sum_probs=34.5
Q ss_pred hcCCHHHHHHHHHHHhHHHhc-----CCcCCCCCCHHHHHHHHhcCe
Q 008614 389 SDLPDDTAKQVKLHFGRNLLG-----QMQKFENWEDYSLDHLCGCLK 430 (559)
Q Consensus 389 ~~Lp~~Lr~~i~~~l~~~~l~-----~v~~F~~~~~~~l~~l~~~l~ 430 (559)
++||+.||+++..+...++.. +-.+++++|++..++|..++-
T Consensus 371 ~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~ 417 (727)
T KOG0498|consen 371 RQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLC 417 (727)
T ss_pred ccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHh
Confidence 579999999999998887765 236788999998888877763
No 65
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=40.08 E-value=73 Score=26.82 Aligned_cols=49 Identities=12% Similarity=0.163 Sum_probs=31.8
Q ss_pred CCCHHHHHHHHHHHHHHhhhh---------cCC---C-HHHHHhcCCHHHHHHHHHHHhHHH
Q 008614 359 DISTFVRAKIREAKRENLLLK---------HDI---H-IDSLVSDLPDDTAKQVKLHFGRNL 407 (559)
Q Consensus 359 ~lp~~L~~rv~~y~~~~~~~~---------~~~---~-~~~ll~~Lp~~Lr~~i~~~l~~~~ 407 (559)
-||.++|.+|..-+...-... .+- . ..++|..||+.+|.||..+.....
T Consensus 8 aLPeDiR~Evl~~~~~~~~~~~~~~~~~~~~~~~~~~I~pefL~ALP~diR~EVl~qe~~~~ 69 (108)
T PF14377_consen 8 ALPEDIREEVLAQQQRERRAQASQRQSPQSSAPQPSQIDPEFLAALPPDIREEVLAQERRER 69 (108)
T ss_pred HCCHHHHHHHHHHHHhhccchhcccCcccccCCCccccCHHHHHhCCHHHHHHHHHHHHHHH
Confidence 589999999855433221100 000 0 358999999999999988765543
No 66
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=36.84 E-value=2.9e+02 Score=34.72 Aligned_cols=16 Identities=13% Similarity=0.125 Sum_probs=11.6
Q ss_pred hhhhhhhhhhcccccce
Q 008614 125 WMLFFIDGLAILPIPQV 141 (559)
Q Consensus 125 ~~~F~~Dlls~lP~~~i 141 (559)
++|-.+|.+-+. ++++
T Consensus 505 ~~~n~fD~~iv~-l~~~ 520 (1592)
T KOG2301|consen 505 RGWNIFDLIIVL-LSLL 520 (1592)
T ss_pred hhcchheEEEEe-hhhH
Confidence 788889988777 4433
No 67
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=35.66 E-value=85 Score=27.08 Aligned_cols=49 Identities=18% Similarity=0.148 Sum_probs=37.9
Q ss_pred CeeEEeCCCCEEEccCCc-cceEEEEEEeEEEEEEcCceEEEEEecCCCeeeh
Q 008614 429 LKPVFFSERTTIISEGES-IHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGE 480 (559)
Q Consensus 429 l~~~~~~~ge~I~~~Gd~-~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fGe 480 (559)
+....+.||..+-.---+ .+...++++|++++..+ +. ...+.+||++-.
T Consensus 45 ~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~-g~--~~~l~~Gd~i~i 94 (131)
T COG1917 45 VVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE-GE--KKELKAGDVIII 94 (131)
T ss_pred EEEEEECCCcccccccCCCcceEEEEEecEEEEEec-CC--ceEecCCCEEEE
Confidence 445668899888776665 67899999999998766 42 469999999764
No 68
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=33.81 E-value=76 Score=29.33 Aligned_cols=46 Identities=13% Similarity=0.153 Sum_probs=30.8
Q ss_pred EEe-CCCC-EEEccCCccceEEEEEEeEEEEEE-cCceEEEEEecCCCee
Q 008614 432 VFF-SERT-TIISEGESIHEMLFVLEGQISIYS-KSKLIGLKRQEDGNYC 478 (559)
Q Consensus 432 ~~~-~~ge-~I~~~Gd~~~~~yfI~~G~v~v~~-~~~~~~~~~l~~G~~f 478 (559)
.++ .||+ .-+.. +..++++++++|.+.+.. ++|+.....+++|++|
T Consensus 38 mvvgGpn~r~d~H~-~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~f 86 (177)
T PRK13264 38 MVVGGPNARTDFHY-DPGEEFFYQLEGDMYLKVQEDGKRRDVPIREGEMF 86 (177)
T ss_pred EEEccCCccccccc-CCCceEEEEECCeEEEEEEcCCceeeEEECCCCEE
Confidence 344 5663 33333 457899999999998654 3443346789999886
No 69
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=32.45 E-value=45 Score=31.69 Aligned_cols=59 Identities=15% Similarity=0.307 Sum_probs=39.9
Q ss_pred hcCCHHHHHHHHHHHhHHHhcCCcCCC-CCCHHHHHHHHhcCeeEE--eCCCCEEEccCCccc
Q 008614 389 SDLPDDTAKQVKLHFGRNLLGQMQKFE-NWEDYSLDHLCGCLKPVF--FSERTTIISEGESIH 448 (559)
Q Consensus 389 ~~Lp~~Lr~~i~~~l~~~~l~~v~~F~-~~~~~~l~~l~~~l~~~~--~~~ge~I~~~Gd~~~ 448 (559)
..+|+. ..++...+...++.-.-.|. ..++...++......+.. +.+||.|+++|+..+
T Consensus 146 ~~~~~~-~~~~~~~l~~~~i~PNl~~d~~~T~~~~~~a~~~V~pv~~~V~~Ge~IV~kGe~VT 207 (222)
T PF07697_consen 146 SNLPSE-LRELLKELLSNFIRPNLIYDEEATEKAREEALASVSPVRGMVKKGEVIVRKGEIVT 207 (222)
T ss_pred cCCCHH-HHHHHHHHHHhcCCchhhcCHHHHHHHHHHHHhcCCchHhhccCCCEEecCCcEeC
Confidence 345666 34444444444443333333 356678888899999998 999999999999765
No 70
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=32.23 E-value=72 Score=28.76 Aligned_cols=45 Identities=16% Similarity=0.249 Sum_probs=31.9
Q ss_pred EEeCCCCE--EEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeee
Q 008614 432 VFFSERTT--IISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCG 479 (559)
Q Consensus 432 ~~~~~ge~--I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fG 479 (559)
...+||-. ....-...+++++|++|+..+..++++ ..+++||..|
T Consensus 47 ~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~d~~e---~~lrpGD~~g 93 (161)
T COG3837 47 EIVEPGGESSLRHWHSAEDEFVYILEGEGTLREDGGE---TRLRPGDSAG 93 (161)
T ss_pred EEeCCCCccccccccccCceEEEEEcCceEEEECCee---EEecCCceee
Confidence 34555532 333445667999999999998776664 5889999877
No 71
>PRK11171 hypothetical protein; Provisional
Probab=31.40 E-value=1.4e+02 Score=29.70 Aligned_cols=48 Identities=21% Similarity=0.248 Sum_probs=38.3
Q ss_pred cCeeEEeCCCCEEEcc-CCccceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008614 428 CLKPVFFSERTTIISE-GESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 478 (559)
Q Consensus 428 ~l~~~~~~~ge~I~~~-Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~f 478 (559)
.|....+.||..+-.. .....+.++|++|+..+..++. ...+.+||+.
T Consensus 185 ~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~~~~---~~~l~~GD~i 233 (266)
T PRK11171 185 HVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRLNND---WVEVEAGDFI 233 (266)
T ss_pred EEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEECCE---EEEeCCCCEE
Confidence 5666789999998874 5666799999999999876543 4689999985
No 72
>COG5559 Uncharacterized conserved small protein [Function unknown]
Probab=31.23 E-value=64 Score=23.76 Aligned_cols=22 Identities=9% Similarity=0.073 Sum_probs=18.9
Q ss_pred hCCCCHHHHHHHHHHHHHHhhh
Q 008614 357 FKDISTFVRAKIREAKRENLLL 378 (559)
Q Consensus 357 ~~~lp~~L~~rv~~y~~~~~~~ 378 (559)
..++|.+|++.|.+|.+|..+.
T Consensus 8 fqkLPDdLKrEvldY~EfLlek 29 (65)
T COG5559 8 FQKLPDDLKREVLDYIEFLLEK 29 (65)
T ss_pred HHHCcHHHHHHHHHHHHHHHHH
Confidence 5589999999999999998764
No 73
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=30.81 E-value=1.5e+02 Score=26.17 Aligned_cols=52 Identities=13% Similarity=0.120 Sum_probs=34.7
Q ss_pred cCeeEEeCCCCEEEccC-CccceEEEEEEeEEEEEE--cC-ceEEEEEecCCCeee
Q 008614 428 CLKPVFFSERTTIISEG-ESIHEMLFVLEGQISIYS--KS-KLIGLKRQEDGNYCG 479 (559)
Q Consensus 428 ~l~~~~~~~ge~I~~~G-d~~~~~yfI~~G~v~v~~--~~-~~~~~~~l~~G~~fG 479 (559)
.+....+.||...-..- ...+++++|++|+..+.. ++ +......+++||.+=
T Consensus 31 ~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ 86 (146)
T smart00835 31 SAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFV 86 (146)
T ss_pred EEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEE
Confidence 34555678888765443 235789999999999654 21 233456899999763
No 74
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=30.59 E-value=1.5e+02 Score=25.49 Aligned_cols=41 Identities=15% Similarity=0.214 Sum_probs=31.1
Q ss_pred eCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008614 434 FSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 478 (559)
Q Consensus 434 ~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~f 478 (559)
..||+.=...++ ++..-|++|.+++..++|+ ...+++||.|
T Consensus 52 ~TpG~~r~~y~~--~E~chil~G~v~~T~d~Ge--~v~~~aGD~~ 92 (116)
T COG3450 52 CTPGKFRVTYDE--DEFCHILEGRVEVTPDGGE--PVEVRAGDSF 92 (116)
T ss_pred ecCccceEEccc--ceEEEEEeeEEEEECCCCe--EEEEcCCCEE
Confidence 355555444444 7888899999999988884 5799999986
No 75
>KOG3300 consensus NADH:ubiquinone oxidoreductase, B16.6 subunit/cell death-regulatory protein [Energy production and conversion; Cell cycle control, cell division, chromosome partitioning]
Probab=29.98 E-value=1.4e+02 Score=25.99 Aligned_cols=44 Identities=14% Similarity=0.176 Sum_probs=25.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhcCCCHHHHHhcCC
Q 008614 348 LRQIKHWKHFKDISTFVRAKIREAKRENLLLKHDIHIDSLVSDLP 392 (559)
Q Consensus 348 ~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~~~~ll~~Lp 392 (559)
...++.|-.++-+=+-||..-.+++--.|.+++. .|.+++++.|
T Consensus 62 r~kiEd~~a~nai~PiL~AErDr~~l~~lrkn~e-eEaeiMKdVP 105 (146)
T KOG3300|consen 62 RLKIEDYAARNAILPILQAERDRRFLSELRKNLE-EEAEIMKDVP 105 (146)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHH-HHHHHHccCC
Confidence 3455666666666666766655555555544321 3566777776
No 76
>PF14841 FliG_M: FliG middle domain; PDB: 3HJL_A 3AJC_A 1LKV_X 3SOH_D 3USY_B 3USW_A.
Probab=28.75 E-value=84 Score=24.76 Aligned_cols=39 Identities=15% Similarity=0.308 Sum_probs=29.5
Q ss_pred HHHHhcCCHHHHHHHHHHHhHHHhcCCcCCCCCCHHHHHHHHhcCee
Q 008614 385 DSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKP 431 (559)
Q Consensus 385 ~~ll~~Lp~~Lr~~i~~~l~~~~l~~v~~F~~~~~~~l~~l~~~l~~ 431 (559)
.+++..||+.+|.++...+ --+...+++.++.+-..++.
T Consensus 30 A~VL~~lp~e~r~~v~~Ri--------a~~~~v~~~~i~~ie~~L~~ 68 (79)
T PF14841_consen 30 AEVLSQLPEELRAEVVRRI--------ARLESVSPEVIEEIEEVLEE 68 (79)
T ss_dssp HHHHHTS-HHHHHHHHHHH--------HTCCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHH--------HccCCCCHHHHHHHHHHHHH
Confidence 5789999999998887765 45677888888888776654
No 77
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=28.17 E-value=1.1e+02 Score=24.67 Aligned_cols=27 Identities=11% Similarity=0.268 Sum_probs=19.4
Q ss_pred eEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008614 449 EMLFVLEGQISIYSKSKLIGLKRQEDGNYC 478 (559)
Q Consensus 449 ~~yfI~~G~v~v~~~~~~~~~~~l~~G~~f 478 (559)
-.++|.+|.|+|.-++.. -.+.+|+.|
T Consensus 35 ~vF~V~~G~v~Vti~~~~---f~v~~G~~F 61 (85)
T PF11699_consen 35 MVFYVIKGKVEVTIHETS---FVVTKGGSF 61 (85)
T ss_dssp EEEEEEESEEEEEETTEE---EEEETT-EE
T ss_pred EEEEEEeCEEEEEEcCcE---EEEeCCCEE
Confidence 378899999998775543 367777776
No 78
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=28.09 E-value=1.5e+02 Score=26.50 Aligned_cols=41 Identities=20% Similarity=0.459 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHH
Q 008614 316 AIWMTIYGVVLFVFLIGRMQSE-----------------TTRAHKINQKLRQIKHWKH 356 (559)
Q Consensus 316 ~i~~mi~G~~~fa~iig~i~s~-----------------~~~~~~~~~~~~~i~~~m~ 356 (559)
.+++.++|..++|++++.+.+. .-..++|+++++...+.++
T Consensus 9 ~lLi~vIglAL~aFIv~d~~~~~~~~~~~~~~VG~VnGe~Is~~ef~~~v~~~~~~~k 66 (145)
T PF13623_consen 9 GLLIIVIGLALFAFIVGDFRSGSGFFGSSQNVVGEVNGEKISYQEFQQRVEQATENYK 66 (145)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCcCCCCCeeEeECCEEcCHHHHHHHHHHHHHHHH
Confidence 3678899999999999876521 1134578888887776655
No 79
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=26.71 E-value=99 Score=20.01 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=18.8
Q ss_pred HHHHHHHHHhCCCC-----HHHHHHHHHHH
Q 008614 348 LRQIKHWKHFKDIS-----TFVRAKIREAK 372 (559)
Q Consensus 348 ~~~i~~~m~~~~lp-----~~L~~rv~~y~ 372 (559)
..++++.++.+++| .+|++|+.+|+
T Consensus 6 ~~~Lk~~l~~~gl~~~G~K~~Lv~Rl~~~~ 35 (35)
T smart00513 6 VSELKDELKKRGLSTSGTKAELVDRLLEAL 35 (35)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHhC
Confidence 35688888888888 45888887763
No 80
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=25.97 E-value=4.8e+02 Score=24.07 Aligned_cols=57 Identities=7% Similarity=0.022 Sum_probs=35.4
Q ss_pred CcCChhhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH--HHHHHHHHHHHHHHHHhCCCCH
Q 008614 306 TSDDVGENIFAIWMTIYGVVLFVFLIGRMQ-----SETTR--AHKINQKLRQIKHWKHFKDIST 362 (559)
Q Consensus 306 ~p~t~~E~~~~i~~mi~G~~~fa~iig~i~-----s~~~~--~~~~~~~~~~i~~~m~~~~lp~ 362 (559)
.+.--.+-++.+.++.+++...||++|-.- .+..+ ..++..|-.+.-+-.+++.+++
T Consensus 69 ~~I~GlDP~~~~g~~t~a~g~lG~L~GP~~G~~vf~l~~r~~~~~~~~Ke~eF~~rIkknRvDp 132 (173)
T PF08566_consen 69 QQIMGLDPFMVYGLATLACGALGWLVGPSLGNQVFRLLNRKYLKQMDAKEKEFLARIKKNRVDP 132 (173)
T ss_pred ccccCcCHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 333345778888999999999999988654 22222 2344444444445556666655
No 81
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=25.92 E-value=3.3e+02 Score=22.11 Aligned_cols=60 Identities=5% Similarity=-0.114 Sum_probs=40.3
Q ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhhhcCCC--HHHHHhcCCHHHHHHHHHHHhHH
Q 008614 347 KLRQIKHWKHF-KDISTFVRAKIREAKRENLLLKHDIH--IDSLVSDLPDDTAKQVKLHFGRN 406 (559)
Q Consensus 347 ~~~~i~~~m~~-~~lp~~L~~rv~~y~~~~~~~~~~~~--~~~ll~~Lp~~Lr~~i~~~l~~~ 406 (559)
..+.++++|.+ .+++++-+.++++.++..-....... -..+-..+++..|..+...+..-
T Consensus 20 E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~L~~v 82 (104)
T cd07313 20 ERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDYEERLELVEALWEV 82 (104)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45678888888 49999999999998876544322222 13344556788888877766543
No 82
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=25.86 E-value=2.6e+02 Score=35.08 Aligned_cols=31 Identities=10% Similarity=0.099 Sum_probs=23.2
Q ss_pred hcccccCCCCcCChhhHHHHHHHHHHHHHHH
Q 008614 297 LSAFGQDLETSDDVGENIFAIWMTIYGVVLF 327 (559)
Q Consensus 297 ~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~f 327 (559)
-+.++-|.+.+.+....+|-++..++|.++.
T Consensus 1062 s~~~~~~p~~~~~~~~~~ffvifii~~~ff~ 1092 (1592)
T KOG2301|consen 1062 SRGVNAQPILESNLYMYLFFVIFIIIGSFFT 1092 (1592)
T ss_pred hhccCcCCcccccccceeehhhhhhHHhhhh
Confidence 4567778888878888888877777777654
No 83
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=25.84 E-value=3.1e+02 Score=25.76 Aligned_cols=50 Identities=10% Similarity=0.025 Sum_probs=32.0
Q ss_pred CeeEEeCCCCEE---------EccCCccceEEEEEEeEEEEEE--cCceEEEEEecCCCee
Q 008614 429 LKPVFFSERTTI---------ISEGESIHEMLFVLEGQISIYS--KSKLIGLKRQEDGNYC 478 (559)
Q Consensus 429 l~~~~~~~ge~I---------~~~Gd~~~~~yfI~~G~v~v~~--~~~~~~~~~l~~G~~f 478 (559)
+-...+.||... +.+.....++|++++|+..+.. .+|......+.+|+.+
T Consensus 70 ~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v 130 (191)
T PRK04190 70 FGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVV 130 (191)
T ss_pred EEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEE
Confidence 344557788753 2333334599999999998543 3333345688998875
No 84
>PF13867 SAP30_Sin3_bdg: Sin3 binding region of histone deacetylase complex subunit SAP30; PDB: 2LD7_A.
Probab=24.92 E-value=1.5e+02 Score=21.37 Aligned_cols=37 Identities=5% Similarity=0.237 Sum_probs=21.0
Q ss_pred HHHHHHHHHhCCCC-------HHHHHHHHHHHHHHhhhhcCCCHHHHHh
Q 008614 348 LRQIKHWKHFKDIS-------TFVRAKIREAKRENLLLKHDIHIDSLVS 389 (559)
Q Consensus 348 ~~~i~~~m~~~~lp-------~~L~~rv~~y~~~~~~~~~~~~~~~ll~ 389 (559)
+..+.+|.+..+++ ++|-..|+++|. ...++|.+++.
T Consensus 3 ~~tLrrY~~~~~l~~~~~~sK~qLa~~V~kHF~-----s~~v~E~evI~ 46 (53)
T PF13867_consen 3 TPTLRRYKKHYKLPERPRSSKEQLANAVRKHFN-----SQPVDENEVIA 46 (53)
T ss_dssp HHHHHHHHHHTT----SS--HHHHHHHHHHHHT-----T----HHHHHH
T ss_pred hHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHh-----cCCCCHHHHHH
Confidence 45678888888777 456777777764 23467766543
No 85
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=24.62 E-value=2.8e+02 Score=22.15 Aligned_cols=63 Identities=16% Similarity=0.122 Sum_probs=40.7
Q ss_pred CeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhhhhhccCCCCCCCCCcccEEEEcce
Q 008614 429 LKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTN 508 (559)
Q Consensus 429 l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~ 508 (559)
.....+.||..+-.-.-.+.+-.||++|.... .++ .+.+|++.=+ .. .+..+..+.+.
T Consensus 26 ~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~d--~~~-----~~~~G~~~~~-------p~--------g~~h~~~s~~g 83 (91)
T PF12973_consen 26 VSLLRLEPGASLPRHRHPGGEEILVLEGELSD--GDG-----RYGAGDWLRL-------PP--------GSSHTPRSDEG 83 (91)
T ss_dssp EEEEEE-TTEEEEEEEESS-EEEEEEECEEEE--TTC-----EEETTEEEEE--------T--------TEEEEEEESSC
T ss_pred EEEEEECCCCCcCccCCCCcEEEEEEEEEEEE--CCc-----cCCCCeEEEe-------CC--------CCccccCcCCC
Confidence 44556788887776555666778999999763 233 4577877532 11 15677888889
Q ss_pred EEEEE
Q 008614 509 VEGFT 513 (559)
Q Consensus 509 ~~l~~ 513 (559)
|.++.
T Consensus 84 c~~~v 88 (91)
T PF12973_consen 84 CLILV 88 (91)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98875
No 86
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=24.03 E-value=2.8e+02 Score=26.56 Aligned_cols=78 Identities=14% Similarity=0.190 Sum_probs=45.2
Q ss_pred HHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhhhhhccCCCCCCCCCcc
Q 008614 421 SLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPIST 500 (559)
Q Consensus 421 ~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~ 500 (559)
|-+..++.+-+..=.-|..=-..++..+...||++|++.+...++ ...+.+|++- + +.+. +.
T Consensus 57 f~~tF~qyive~~p~GGs~~~e~d~~ae~~lfVv~Ge~tv~~~G~---th~l~eggya----y---lPpg--------s~ 118 (264)
T COG3257 57 FAATFVQYIVELHPNGGSQRPEGDEGAETFLFVVSGEITVKAEGK---THALREGGYA----Y---LPPG--------SG 118 (264)
T ss_pred hhhhhhhheEEECCCCCCCCCCCCCcceEEEEEEeeeEEEEEcCe---EEEeccCCeE----E---eCCC--------Cc
Confidence 344444444433222223333345567789999999999876554 4688888762 2 2221 34
Q ss_pred cEEE--EcceEEEEEEeH
Q 008614 501 RTII--AHTNVEGFTLKT 516 (559)
Q Consensus 501 ~tv~--A~~~~~l~~L~~ 516 (559)
.+++ +.++++...+.|
T Consensus 119 ~~~~N~~~~~~rfhw~rk 136 (264)
T COG3257 119 WTLRNAQKEDSRFHWIRK 136 (264)
T ss_pred ceEeeccCCceEEEEEee
Confidence 4555 667777766654
No 87
>PF10047 DUF2281: Protein of unknown function (DUF2281); InterPro: IPR018739 This domain is found in putative uncharacterised proteins, though some proteins contaning this domain are described as a transcritional regulator of the Xre family.
Probab=23.81 E-value=64 Score=24.52 Aligned_cols=23 Identities=4% Similarity=-0.029 Sum_probs=20.1
Q ss_pred hCCCCHHHHHHHHHHHHHHhhhh
Q 008614 357 FKDISTFVRAKIREAKRENLLLK 379 (559)
Q Consensus 357 ~~~lp~~L~~rv~~y~~~~~~~~ 379 (559)
-+++|+++++.|.+|.+|...+.
T Consensus 9 i~~LP~~~~~Evldfi~fL~~k~ 31 (66)
T PF10047_consen 9 IQQLPEELQQEVLDFIEFLLQKY 31 (66)
T ss_pred HHHCCHHHHHHHHHHHHHHHHhc
Confidence 45899999999999999988764
No 88
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=23.74 E-value=7.7e+02 Score=26.05 Aligned_cols=21 Identities=14% Similarity=0.036 Sum_probs=10.1
Q ss_pred ehhhhHHHHHHHHHHHHHHHh
Q 008614 66 TATVIRSILDFLKLLHISSEL 86 (559)
Q Consensus 66 ~~~~~~~~~d~~f~~Di~l~f 86 (559)
.|.++|.++-++.++=+++.+
T Consensus 243 ~WN~~e~~ii~ls~~~i~~~~ 263 (425)
T PF08016_consen 243 FWNWLELLIILLSLAVIVLYF 263 (425)
T ss_pred cCcHHHHHHHHHHHHHHHHHH
Confidence 455555555444444444444
No 89
>KOG3261 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.99 E-value=16 Score=32.92 Aligned_cols=43 Identities=28% Similarity=0.240 Sum_probs=34.2
Q ss_pred hhhhhhhhhcccccCCceeecChhhHh------hhhhhhhhhhcccccce
Q 008614 98 KFKHLWQQLKNFKKGGREVLEDPMVRM------WMLFFIDGLAILPIPQV 141 (559)
Q Consensus 98 ~~~~~~~~~~~~~~~~g~~v~d~~~I~------~~~F~~Dlls~lP~~~i 141 (559)
|---||.|..-.. .+|.++.|-..|+ .+-|+.|+=|++||.-.
T Consensus 55 KmIPlWkQkA~~~-~dG~VlWDYHVi~v~~~s~~~~~vyDLDstLpfpc~ 103 (202)
T KOG3261|consen 55 KMIPLWKQKASTR-ADGVVLWDYHVICVQRKSDSEPLVYDLDSTLPFPCP 103 (202)
T ss_pred ccchhhhhhccCC-CCCcEEEEEEEEEEEEccCCCceEEecccCCcCCcc
Confidence 4445888877632 7899999999998 56799999999999643
No 90
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=22.40 E-value=4.3e+02 Score=21.54 Aligned_cols=34 Identities=9% Similarity=0.151 Sum_probs=23.6
Q ss_pred HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhCCCC
Q 008614 328 VFLIGRMQ-------SETTRAHKINQKLRQIKHWKHFKDIS 361 (559)
Q Consensus 328 a~iig~i~-------s~~~~~~~~~~~~~~i~~~m~~~~lp 361 (559)
+|..++++ ..-...+|.++.+++.++.++++++.
T Consensus 50 ~Ysl~~lgy~v~tFnDcpeA~~eL~~eI~eAK~dLr~kGv~ 90 (91)
T PF08285_consen 50 CYSLFTLGYGVATFNDCPEAAKELQKEIKEAKADLRKKGVD 90 (91)
T ss_pred HHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 35666666 22234567788889999999999874
No 91
>KOG1054 consensus Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=22.11 E-value=2.2e+02 Score=31.44 Aligned_cols=47 Identities=9% Similarity=0.109 Sum_probs=35.9
Q ss_pred HHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008614 288 RCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQ 335 (559)
Q Consensus 288 ~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~ 335 (559)
.|++|++....--|. ||.|.+..-++..-++-++..++.+--.+|++
T Consensus 598 NsLWFsLgAFMQQG~-DI~PRslSGRIvggvWWFFTlIIiSSYTANLA 644 (897)
T KOG1054|consen 598 NSLWFSLGAFMQQGC-DISPRSLSGRIVGGVWWFFTLIIISSYTANLA 644 (897)
T ss_pred HHHHHHHHHHHhcCC-CCCccccccceeccchhhhhhhhhhhhhhHHH
Confidence 489999998888887 99999999998887776666655544444554
No 92
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=22.05 E-value=1.6e+02 Score=26.50 Aligned_cols=28 Identities=25% Similarity=0.381 Sum_probs=21.2
Q ss_pred ceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008614 448 HEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 478 (559)
Q Consensus 448 ~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~f 478 (559)
+++.+|++|++++..+ |+ ....++||++
T Consensus 96 DEi~~VlEG~L~i~~~-G~--~~~A~~GDvi 123 (152)
T PF06249_consen 96 DEIKYVLEGTLEISID-GQ--TVTAKPGDVI 123 (152)
T ss_dssp EEEEEEEEEEEEEEET-TE--EEEEETT-EE
T ss_pred ceEEEEEEeEEEEEEC-CE--EEEEcCCcEE
Confidence 6899999999998765 43 4588888875
No 93
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=21.89 E-value=4e+02 Score=29.11 Aligned_cols=43 Identities=12% Similarity=0.145 Sum_probs=27.5
Q ss_pred HHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHH
Q 008614 289 CLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIG 332 (559)
Q Consensus 289 slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig 332 (559)
++--.+..+.+.|||-+.| +-.....-.+.+-+...+++-+.|
T Consensus 282 Tlsr~LlLIVSlGYGIVkP-~Lg~~l~rv~~ig~~~~i~s~i~~ 324 (518)
T KOG2568|consen 282 TLSRLLLLIVSLGYGIVKP-TLGGTLLRVCQIGVIYFIASEILG 324 (518)
T ss_pred HHHHHHHHHHhcCcceEec-CcchHHHHHHHHhHHHHHHHHHHH
Confidence 4455667789999999998 666555555555444444444444
No 94
>PRK11171 hypothetical protein; Provisional
Probab=21.78 E-value=2.2e+02 Score=28.21 Aligned_cols=47 Identities=21% Similarity=0.263 Sum_probs=32.3
Q ss_pred CeeEEeCCCCEEEccCC--ccceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008614 429 LKPVFFSERTTIISEGE--SIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 478 (559)
Q Consensus 429 l~~~~~~~ge~I~~~Gd--~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~f 478 (559)
+....+.||...-.... ..+++++|++|++++..++. ...+.+||.+
T Consensus 63 ~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~~g~---~~~L~~GDsi 111 (266)
T PRK11171 63 QYLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTLEGK---THALSEGGYA 111 (266)
T ss_pred EEEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEECCE---EEEECCCCEE
Confidence 34455788875433322 24689999999999876443 4689999875
No 95
>PF06971 Put_DNA-bind_N: Putative DNA-binding protein N-terminus; InterPro: IPR009718 This entry represents the C terminus (approximately 30 residues) of a number of Rex proteins. These are redox-sensing repressors that appear to be widespread among Gram-positive bacteria []. They modulate transcription in response to changes in cellular NADH/NAD(+) redox state. Rex is predicted to include a pyridine nucleotide-binding domain (Rossmann fold), and residues that might play key structural and nucleotide binding roles are highly conserved.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0051775 response to redox state, 0005737 cytoplasm; PDB: 3IL2_B 3IKT_A 3IKV_B 1XCB_F 2DT5_A 2VT3_A 2VT2_A 3KEO_B 3KET_A 3KEQ_A ....
Probab=20.61 E-value=2.7e+02 Score=19.97 Aligned_cols=42 Identities=14% Similarity=0.095 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHHHHHHHHhhh-hcCCC---H---HHHHhcCCHHHHHHH
Q 008614 358 KDISTFVRAKIREAKRENLLL-KHDIH---I---DSLVSDLPDDTAKQV 399 (559)
Q Consensus 358 ~~lp~~L~~rv~~y~~~~~~~-~~~~~---~---~~ll~~Lp~~Lr~~i 399 (559)
+++|+..-+|.-.|+++.-.- ..|.+ - .+.+.-=|.+.|+|+
T Consensus 1 k~Ip~~ti~RL~~Y~r~L~~l~~~G~~~vSS~~La~~~gi~~~qVRKDl 49 (50)
T PF06971_consen 1 KKIPKATIRRLPLYLRYLEQLKEEGVERVSSQELAEALGITPAQVRKDL 49 (50)
T ss_dssp -S-SHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHHTS-HHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCeeECHHHHHHHHCCCHHHhcccC
Confidence 479999999999999987653 34543 2 344555566777664
No 96
>PF03579 SHP: Small hydrophobic protein; InterPro: IPR005327 The small hydrophobic integral membrane protein, SH (previously designated 1A) is found to have a variety of glycosylated forms [, ]. This protein is a component of the mature respiratory syncytial virion [] where it may form complexes and appears to play a structural role.; GO: 0016020 membrane, 0016021 integral to membrane, 0048222 glycoprotein network
Probab=20.48 E-value=3.6e+02 Score=19.87 Aligned_cols=32 Identities=13% Similarity=0.297 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008614 314 IFAIWMTIYGVVLFVFLIGRMQSETTRAHKIN 345 (559)
Q Consensus 314 ~~~i~~mi~G~~~fa~iig~i~s~~~~~~~~~ 345 (559)
.|+.+.|++..+.+-.+++-++++..+.-+++
T Consensus 17 YFtLi~M~lti~~~~Iv~si~~AILNKLcd~n 48 (64)
T PF03579_consen 17 YFTLIFMMLTIGFFFIVTSIMAAILNKLCDLN 48 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46667777777777777777777776554433
No 97
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=20.08 E-value=1.4e+02 Score=19.76 Aligned_cols=15 Identities=20% Similarity=0.395 Sum_probs=12.1
Q ss_pred HHHHHHHHhCCCCHH
Q 008614 349 RQIKHWKHFKDISTF 363 (559)
Q Consensus 349 ~~i~~~m~~~~lp~~ 363 (559)
+++++|++.+++|.+
T Consensus 7 ~~L~~wL~~~gi~~~ 21 (38)
T PF10281_consen 7 SDLKSWLKSHGIPVP 21 (38)
T ss_pred HHHHHHHHHcCCCCC
Confidence 578899999988754
Done!