Query 008614
Match_columns 559
No_of_seqs 313 out of 2869
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 07:39:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008614.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008614hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3beh_A MLL3241 protein; transm 100.0 3.1E-36 1.1E-40 312.1 12.2 181 283-531 159-339 (355)
2 2ptm_A Hyperpolarization-activ 100.0 1E-31 3.6E-36 254.6 23.3 183 336-530 2-184 (198)
3 3bpz_A Potassium/sodium hyperp 100.0 2.8E-31 9.5E-36 252.6 24.0 183 336-531 3-185 (202)
4 3ukn_A Novel protein similar t 100.0 7.3E-32 2.5E-36 258.5 16.5 185 336-531 6-190 (212)
5 1orq_C Potassium channel; volt 99.9 4E-22 1.4E-26 192.4 14.5 210 25-339 9-219 (223)
6 4f8a_A Potassium voltage-gated 99.8 1E-19 3.6E-24 165.1 15.8 138 384-531 5-142 (160)
7 2r9r_B Paddle chimera voltage 99.8 2.7E-19 9.4E-24 192.3 14.5 230 17-339 174-429 (514)
8 3ocp_A PRKG1 protein; serine/t 99.8 3.7E-18 1.3E-22 151.3 12.7 131 390-532 7-137 (139)
9 3gyd_A CNMP-BD protein, cyclic 99.7 1.2E-15 4.2E-20 142.6 19.6 138 384-531 13-157 (187)
10 3idb_B CAMP-dependent protein 99.7 2.5E-16 8.5E-21 143.2 14.2 124 398-531 30-155 (161)
11 2pqq_A Putative transcriptiona 99.7 7.6E-16 2.6E-20 137.5 17.0 117 405-531 4-123 (149)
12 3mdp_A Cyclic nucleotide-bindi 99.7 6.9E-16 2.4E-20 136.7 14.1 117 405-531 5-127 (142)
13 1wgp_A Probable cyclic nucleot 99.7 1.2E-16 4E-21 141.1 8.0 126 406-532 6-135 (137)
14 3pna_A CAMP-dependent protein 99.7 1.3E-15 4.3E-20 137.6 14.1 118 402-531 34-151 (154)
15 1vp6_A CNBD, cyclic-nucleotide 99.6 2.5E-15 8.7E-20 132.5 15.2 113 405-531 10-122 (138)
16 3shr_A CGMP-dependent protein 99.6 1.2E-15 4.1E-20 153.3 14.3 134 386-531 19-152 (299)
17 2z69_A DNR protein; beta barre 99.6 2.2E-15 7.6E-20 135.3 14.4 118 405-531 11-131 (154)
18 3vou_A ION transport 2 domain 99.6 2.9E-15 9.9E-20 134.3 14.9 82 286-367 53-148 (148)
19 2a9h_A Voltage-gated potassium 99.6 6.3E-16 2.2E-20 138.9 8.9 56 284-339 83-138 (155)
20 3dn7_A Cyclic nucleotide bindi 99.6 7.4E-15 2.5E-19 137.6 16.1 117 405-531 6-126 (194)
21 4ev0_A Transcription regulator 99.6 1.1E-14 3.9E-19 138.6 17.5 114 408-531 1-117 (216)
22 2d93_A RAP guanine nucleotide 99.6 3.6E-16 1.2E-20 137.6 4.7 125 394-530 4-130 (134)
23 3fx3_A Cyclic nucleotide-bindi 99.6 2.6E-14 8.8E-19 138.3 17.3 119 403-531 8-129 (237)
24 3of1_A CAMP-dependent protein 99.6 2E-14 6.7E-19 139.6 15.3 118 403-531 122-239 (246)
25 2ih3_C Voltage-gated potassium 99.6 1.5E-14 5E-19 125.0 12.4 58 284-341 60-117 (122)
26 3d0s_A Transcriptional regulat 99.6 1.4E-14 4.7E-19 139.3 13.7 117 405-531 5-124 (227)
27 3e97_A Transcriptional regulat 99.6 2.2E-14 7.6E-19 138.2 14.5 117 405-531 5-124 (231)
28 4ava_A Lysine acetyltransferas 99.6 2.6E-14 9E-19 145.8 15.4 116 405-531 12-129 (333)
29 1zyb_A Transcription regulator 99.6 5.4E-14 1.8E-18 135.9 16.5 118 405-531 17-139 (232)
30 3dv8_A Transcriptional regulat 99.6 8.1E-14 2.8E-18 133.0 16.7 116 406-531 3-123 (220)
31 3of1_A CAMP-dependent protein 99.5 2.9E-14 9.8E-19 138.5 12.8 115 405-531 6-120 (246)
32 3iwz_A CAP-like, catabolite ac 99.5 2.1E-13 7.3E-18 131.0 18.4 118 405-531 10-135 (230)
33 4h33_A LMO2059 protein; bilaye 99.5 8.6E-15 3E-19 129.1 7.5 88 286-373 44-135 (137)
34 3shr_A CGMP-dependent protein 99.5 7E-14 2.4E-18 140.3 14.9 120 402-531 153-276 (299)
35 2gau_A Transcriptional regulat 99.5 8.1E-14 2.8E-18 134.3 14.5 113 409-531 13-128 (232)
36 2qcs_B CAMP-dependent protein 99.5 1.6E-13 5.5E-18 137.0 16.5 119 403-531 154-276 (291)
37 3dkw_A DNR protein; CRP-FNR, H 99.5 4.5E-14 1.5E-18 135.5 11.0 118 405-531 8-128 (227)
38 2qcs_B CAMP-dependent protein 99.5 1.3E-13 4.5E-18 137.6 14.3 119 401-531 34-152 (291)
39 3tnp_B CAMP-dependent protein 99.5 1.3E-13 4.6E-18 145.0 14.7 122 400-531 139-262 (416)
40 1o7f_A CAMP-dependent RAP1 gua 99.5 3.1E-13 1.1E-17 144.5 15.2 129 391-530 27-160 (469)
41 3ryp_A Catabolite gene activat 99.5 1.1E-12 3.8E-17 124.1 17.2 111 412-531 2-115 (210)
42 4din_B CAMP-dependent protein 99.5 1.6E-13 5.6E-18 142.8 12.0 119 401-531 125-243 (381)
43 3eff_K Voltage-gated potassium 99.5 6.7E-13 2.3E-17 117.6 13.7 53 285-337 40-92 (139)
44 2oz6_A Virulence factor regula 99.5 1.3E-12 4.3E-17 123.4 16.3 109 417-531 1-112 (207)
45 2fmy_A COOA, carbon monoxide o 99.5 2.2E-13 7.6E-18 130.2 10.8 109 406-531 4-114 (220)
46 4din_B CAMP-dependent protein 99.4 2.5E-13 8.5E-18 141.4 10.4 120 402-531 244-367 (381)
47 1o7f_A CAMP-dependent RAP1 gua 99.4 8.3E-13 2.8E-17 141.1 14.2 117 404-531 335-453 (469)
48 3tnp_B CAMP-dependent protein 99.4 5.1E-13 1.7E-17 140.6 11.2 119 403-531 264-391 (416)
49 1ft9_A Carbon monoxide oxidati 99.4 6.8E-13 2.3E-17 127.0 11.0 108 407-531 1-110 (222)
50 3kcc_A Catabolite gene activat 99.4 4.3E-12 1.5E-16 124.7 16.9 108 415-531 55-165 (260)
51 4f7z_A RAP guanine nucleotide 99.4 1.9E-12 6.4E-17 151.1 15.3 117 403-530 39-160 (999)
52 1o5l_A Transcriptional regulat 99.4 3.8E-12 1.3E-16 121.1 13.8 111 411-530 4-117 (213)
53 3cf6_E RAP guanine nucleotide 99.4 2.7E-12 9.1E-17 142.9 13.4 133 386-530 13-147 (694)
54 3e6c_C CPRK, cyclic nucleotide 99.3 5.9E-12 2E-16 122.8 12.3 112 407-531 10-124 (250)
55 2q67_A Potassium channel prote 99.3 1.2E-11 4.1E-16 105.3 12.1 54 286-339 50-103 (114)
56 2k1e_A Water soluble analogue 99.3 1.1E-12 3.8E-17 109.7 3.2 55 285-339 40-94 (103)
57 4f7z_A RAP guanine nucleotide 99.3 3.5E-11 1.2E-15 140.4 16.2 115 403-528 334-450 (999)
58 3la7_A Global nitrogen regulat 99.3 7E-11 2.4E-15 114.7 15.5 105 419-531 30-140 (243)
59 3ouf_A Potassium channel prote 99.2 8.3E-11 2.8E-15 97.0 12.1 54 286-339 33-86 (97)
60 2bgc_A PRFA; bacterial infecti 99.2 1.2E-10 4E-15 112.7 14.7 107 416-531 3-115 (238)
61 3ldc_A Calcium-gated potassium 99.1 1E-10 3.5E-15 93.3 7.7 52 286-337 29-80 (82)
62 3rvy_A ION transport protein; 99.1 5.1E-10 1.7E-14 111.5 10.6 55 283-337 178-238 (285)
63 3pjs_K KCSA, voltage-gated pot 99.0 4.5E-11 1.5E-15 109.0 1.7 52 285-336 67-118 (166)
64 3b02_A Transcriptional regulat 99.0 2.1E-09 7.1E-14 100.4 12.4 78 432-520 2-82 (195)
65 1xl4_A Inward rectifier potass 98.9 1.9E-09 6.4E-14 107.4 9.4 54 285-338 82-135 (301)
66 1p7b_A Integral membrane chann 98.9 2E-09 6.9E-14 108.3 8.5 55 285-339 96-150 (333)
67 3um7_A Potassium channel subfa 98.9 4.9E-09 1.7E-13 104.0 10.3 77 285-363 115-191 (309)
68 2zcw_A TTHA1359, transcription 98.8 1.1E-08 3.7E-13 96.0 10.7 84 425-520 1-89 (202)
69 2qks_A KIR3.1-prokaryotic KIR 98.7 1.5E-08 5.3E-13 101.5 7.3 55 285-339 78-132 (321)
70 4gx0_A TRKA domain protein; me 98.6 1.9E-07 6.6E-12 101.9 11.5 48 286-333 52-99 (565)
71 3ukm_A Potassium channel subfa 98.6 7.6E-08 2.6E-12 94.0 7.2 52 285-336 93-144 (280)
72 3sya_A G protein-activated inw 98.5 3.2E-07 1.1E-11 92.0 11.6 54 286-339 92-147 (340)
73 3ukm_A Potassium channel subfa 98.4 2.2E-07 7.6E-12 90.7 6.7 52 286-337 202-260 (280)
74 3um7_A Potassium channel subfa 98.4 2.1E-07 7.1E-12 92.3 5.2 53 286-338 225-283 (309)
75 3spc_A Inward-rectifier K+ cha 98.4 1.7E-06 5.8E-11 86.9 11.5 55 285-339 94-150 (343)
76 1lnq_A MTHK channels, potassiu 98.2 1E-07 3.5E-12 97.0 -0.9 50 288-337 48-97 (336)
77 4dxw_A Navrh, ION transport pr 97.8 0.00019 6.4E-09 68.5 13.0 24 65-88 42-65 (229)
78 1ors_C Potassium channel; volt 95.5 0.0086 2.9E-07 51.6 3.7 46 65-139 37-82 (132)
79 2kyh_A KVAP, voltage-gated pot 94.8 0.025 8.4E-07 49.7 4.5 24 66-89 53-76 (147)
80 3fjs_A Uncharacterized protein 71.2 24 0.00081 28.5 9.1 67 429-513 38-104 (114)
81 2ozj_A Cupin 2, conserved barr 65.6 35 0.0012 27.2 9.0 64 433-514 44-107 (114)
82 3rns_A Cupin 2 conserved barre 64.9 33 0.0011 31.6 9.7 68 429-514 39-106 (227)
83 1yhf_A Hypothetical protein SP 62.4 53 0.0018 25.9 9.6 68 429-514 42-109 (115)
84 3lwc_A Uncharacterized protein 60.4 24 0.00082 29.0 7.0 43 432-478 45-87 (119)
85 2pfw_A Cupin 2, conserved barr 56.9 54 0.0019 25.9 8.7 68 429-514 36-103 (116)
86 2gu9_A Tetracenomycin polyketi 54.0 28 0.00097 27.3 6.4 47 429-478 23-72 (113)
87 1o5u_A Novel thermotoga mariti 52.6 45 0.0015 26.4 7.2 46 429-478 33-78 (101)
88 1v70_A Probable antibiotics sy 52.0 33 0.0011 26.3 6.4 46 430-478 31-77 (105)
89 4e2g_A Cupin 2 conserved barre 50.5 33 0.0011 27.9 6.4 47 429-478 43-89 (126)
90 3es4_A Uncharacterized protein 49.9 16 0.00054 30.2 4.0 43 434-479 49-91 (116)
91 2fqp_A Hypothetical protein BP 48.9 16 0.00056 28.4 4.0 49 430-479 21-70 (97)
92 3bcw_A Uncharacterized protein 47.7 16 0.00054 30.4 3.8 43 434-479 56-98 (123)
93 3h8u_A Uncharacterized conserv 47.5 29 0.001 28.1 5.6 48 429-478 41-89 (125)
94 1yfu_A 3-hydroxyanthranilate-3 45.7 26 0.00089 31.0 5.0 33 446-478 54-87 (174)
95 3kg2_A Glutamate receptor 2; I 45.4 26 0.00089 38.9 6.4 54 285-339 563-616 (823)
96 3rns_A Cupin 2 conserved barre 42.0 89 0.003 28.6 8.6 69 428-514 154-223 (227)
97 3d82_A Cupin 2, conserved barr 41.6 61 0.0021 24.7 6.4 52 447-516 50-101 (102)
98 1zvf_A 3-hydroxyanthranilate 3 39.8 26 0.00088 31.0 4.0 59 420-478 12-90 (176)
99 3ibm_A Cupin 2, conserved barr 38.6 52 0.0018 28.7 6.0 47 429-478 58-104 (167)
100 1dgw_A Canavalin; duplicated s 37.2 53 0.0018 28.9 5.9 50 429-479 43-94 (178)
101 2opk_A Hypothetical protein; p 37.1 38 0.0013 27.2 4.5 33 445-478 51-83 (112)
102 3i7d_A Sugar phosphate isomera 36.8 38 0.0013 29.4 4.8 47 429-478 45-93 (163)
103 1o4t_A Putative oxalate decarb 36.3 57 0.0019 26.9 5.7 46 430-478 60-106 (133)
104 2pyt_A Ethanolamine utilizatio 36.2 43 0.0015 28.0 4.9 43 432-479 62-104 (133)
105 4i4a_A Similar to unknown prot 36.1 62 0.0021 26.2 5.9 46 430-478 37-82 (128)
106 2vpv_A Protein MIF2, MIF2P; nu 35.3 38 0.0013 29.8 4.4 31 446-479 109-139 (166)
107 2i45_A Hypothetical protein; n 35.3 40 0.0014 26.5 4.4 69 434-519 35-103 (107)
108 4b29_A Dimethylsulfoniopropion 34.4 55 0.0019 30.1 5.5 32 445-478 150-181 (217)
109 3d0j_A Uncharacterized protein 34.4 40 0.0014 28.6 4.2 60 443-517 46-110 (140)
110 1sfn_A Conserved hypothetical 34.3 60 0.0021 30.2 6.1 50 427-479 165-215 (246)
111 3l2h_A Putative sugar phosphat 34.2 42 0.0014 28.8 4.7 47 429-478 48-96 (162)
112 3es1_A Cupin 2, conserved barr 34.0 43 0.0015 29.6 4.6 48 429-478 81-128 (172)
113 3kgz_A Cupin 2 conserved barre 33.9 46 0.0016 28.7 4.8 44 432-478 49-92 (156)
114 2f4p_A Hypothetical protein TM 33.4 83 0.0028 26.5 6.4 47 430-478 51-97 (147)
115 3jzv_A Uncharacterized protein 32.9 44 0.0015 29.2 4.5 44 432-478 58-101 (166)
116 3cew_A Uncharacterized cupin p 32.2 64 0.0022 26.1 5.3 46 430-478 29-76 (125)
117 1sq4_A GLXB, glyoxylate-induce 32.0 76 0.0026 30.2 6.5 49 427-478 191-240 (278)
118 1y9q_A Transcriptional regulat 31.6 93 0.0032 27.3 6.7 44 432-478 109-154 (192)
119 4axo_A EUTQ, ethanolamine util 31.4 58 0.002 28.0 4.9 30 446-478 83-112 (151)
120 1vj2_A Novel manganese-contain 31.2 52 0.0018 26.8 4.5 44 432-478 53-96 (126)
121 3bu7_A Gentisate 1,2-dioxygena 29.5 45 0.0015 33.7 4.4 47 430-478 126-172 (394)
122 1orq_C Potassium channel; volt 29.4 83 0.0029 28.5 6.1 17 157-173 100-116 (223)
123 1sfn_A Conserved hypothetical 28.3 1E+02 0.0035 28.6 6.5 43 431-478 54-96 (246)
124 2b8m_A Hypothetical protein MJ 28.3 59 0.002 25.9 4.3 45 432-478 32-76 (117)
125 2qnk_A 3-hydroxyanthranilate 3 27.8 63 0.0022 30.8 4.8 57 445-516 49-106 (286)
126 2bnm_A Epoxidase; oxidoreducta 27.2 73 0.0025 28.1 5.1 47 432-478 122-172 (198)
127 3h7j_A Bacilysin biosynthesis 26.1 1E+02 0.0036 28.4 6.2 46 429-477 36-81 (243)
128 3nw4_A Gentisate 1,2-dioxygena 26.0 92 0.0032 31.1 5.9 81 430-528 282-362 (368)
129 3bu7_A Gentisate 1,2-dioxygena 25.5 65 0.0022 32.5 4.8 79 430-526 297-378 (394)
130 1lr5_A Auxin binding protein 1 25.5 65 0.0022 27.6 4.3 50 429-478 43-98 (163)
131 3lag_A Uncharacterized protein 25.0 19 0.00065 28.4 0.6 50 429-478 19-69 (98)
132 2q30_A Uncharacterized protein 24.8 1.1E+02 0.0039 23.5 5.4 68 430-514 36-105 (110)
133 4e2q_A Ureidoglycine aminohydr 24.0 78 0.0027 30.1 4.8 68 431-516 74-142 (266)
134 3myx_A Uncharacterized protein 23.7 70 0.0024 29.8 4.3 31 447-479 186-216 (238)
135 1sef_A Conserved hypothetical 23.6 1.2E+02 0.004 28.7 6.1 47 429-478 184-231 (274)
136 2oa2_A BH2720 protein; 1017534 22.8 1.3E+02 0.0046 25.1 5.7 48 431-478 47-98 (148)
137 1ors_C Potassium channel; volt 22.2 47 0.0016 27.7 2.6 14 25-38 7-20 (132)
138 2o8q_A Hypothetical protein; c 21.5 1.2E+02 0.0042 24.6 5.2 30 447-478 64-93 (134)
139 1fi2_A Oxalate oxidase, germin 21.1 2.1E+02 0.0072 25.4 7.0 51 429-479 74-130 (201)
140 2xp1_A SPT6; transcription, IW 20.8 1.1E+02 0.0038 27.1 4.8 36 409-450 12-47 (178)
141 2ea7_A 7S globulin-1; beta bar 20.4 1.1E+02 0.0039 31.2 5.5 52 427-478 61-113 (434)
142 3beh_A MLL3241 protein; transm 20.1 4E+02 0.014 25.7 9.5 80 125-215 72-152 (355)
No 1
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=100.00 E-value=3.1e-36 Score=312.10 Aligned_cols=181 Identities=17% Similarity=0.238 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Q 008614 283 PKKLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETTRAHKINQKLRQIKHWKHFKDIST 362 (559)
Q Consensus 283 ~~~Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~~~~~~~~~~~~~~i~~~m~~~~lp~ 362 (559)
+..|..|+||+++||||+||||++|.|..|+++++++|++|.+++|+.+|.+++...+.. ++
T Consensus 159 f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~--~~---------------- 220 (355)
T 3beh_A 159 FGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEV--RR---------------- 220 (355)
T ss_dssp HSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH----------------
T ss_pred cccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH----------------
Confidence 446889999999999999999999999999999999999999999999999986543211 10
Q ss_pred HHHHHHHHHHHHHhhhhcCCCHHHHHhcCCHHHHHHHHHHHhHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEc
Q 008614 363 FVRAKIREAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIIS 442 (559)
Q Consensus 363 ~L~~rv~~y~~~~~~~~~~~~~~~ll~~Lp~~Lr~~i~~~l~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~ 442 (559)
+++.+ +.+.++++|+|++++++.+++++..++++.|+|||.|++
T Consensus 221 ------~~~~~------------------------------~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I~~ 264 (355)
T 3beh_A 221 ------GDFVR------------------------------NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICR 264 (355)
T ss_dssp ------HHHHH------------------------------HHC------------------------------------
T ss_pred ------Hhhcc------------------------------cchhhhcccccccCCHHHHHHHHHhceEEEECCCCEEEe
Confidence 00100 246788999999999999999999999999999999999
Q ss_pred cCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHH
Q 008614 443 EGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHG 522 (559)
Q Consensus 443 ~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~l 522 (559)
+||.++++|||.+|.|++...+ ...+++|++|||.++. .+. ++.++++|.++|+++.+++++|.++
T Consensus 265 ~G~~~~~ly~I~~G~v~v~~~~----~~~l~~G~~fGe~~~l---~~~-------~~~~~~~A~~~~~l~~i~~~~f~~l 330 (355)
T 3beh_A 265 IGEPGDRMFFVVEGSVSVATPN----PVELGPGAFFGEMALI---SGE-------PRSATVSAATTVSLLSLHSADFQML 330 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcCceEEEEEeeEEEEEECC----eeEECCCCEEeehHHh---CCC-------CcceEEEECccEEEEEEeHHHHHHH
Confidence 9999999999999999976544 2589999999999763 322 1789999999999999999999999
Q ss_pred HHhcHhhhh
Q 008614 523 IALHRRFNQ 531 (559)
Q Consensus 523 l~~~P~~~~ 531 (559)
++++|++.+
T Consensus 331 l~~~p~~~~ 339 (355)
T 3beh_A 331 CSSSPEIAE 339 (355)
T ss_dssp ---------
T ss_pred HHHCHHHHH
Confidence 999999854
No 2
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=100.00 E-value=1e-31 Score=254.65 Aligned_cols=183 Identities=15% Similarity=0.244 Sum_probs=169.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhcCCCHHHHHhcCCHHHHHHHHHHHhHHHhcCCcCCC
Q 008614 336 SETTRAHKINQKLRQIKHWKHFKDISTFVRAKIREAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFE 415 (559)
Q Consensus 336 s~~~~~~~~~~~~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~~~~ll~~Lp~~Lr~~i~~~l~~~~l~~v~~F~ 415 (559)
++.++..+++++|+.+++||+.+++|++||.||++||+|.|+ .++.+++++++.||++||.++..+++.++++++|+|+
T Consensus 2 ~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f~ 80 (198)
T 2ptm_A 2 AMDSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYR-GKMFDERHIFREVSESIRQDVANYNCRDLVASVPFFV 80 (198)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGGT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCcchh
Confidence 455677789999999999999999999999999999999998 4778999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhhhhhccCCCCCC
Q 008614 416 NWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGH 495 (559)
Q Consensus 416 ~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~ 495 (559)
+++++++..++..++++.|.|||+|+++||.++++|||.+|.|++...+|. .+..+++|++|||.++. .+.+
T Consensus 81 ~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~~~g~-~~~~l~~G~~fGe~~~~--~~~~----- 152 (198)
T 2ptm_A 81 GADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIMSDGV-IATSLSDGSYFGEICLL--TRER----- 152 (198)
T ss_dssp TCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEECTTSC-EEEEECTTCEESCHHHH--HSSC-----
T ss_pred cCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEecCCe-EEEEecCCCEechHHHc--CCCc-----
Confidence 999999999999999999999999999999999999999999998776665 67899999999998764 2322
Q ss_pred CCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhh
Q 008614 496 LPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFN 530 (559)
Q Consensus 496 ~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~ 530 (559)
+.++++|.++|+++.|++++|.++++++|++.
T Consensus 153 ---~~~~~~a~~~~~l~~i~~~~f~~ll~~~p~~~ 184 (198)
T 2ptm_A 153 ---RVASVKCETYCTLFSLSVQHFNQVLDEFPAMR 184 (198)
T ss_dssp ---CSSEEEESSCEEEEEEEHHHHHHHHHHCHHHH
T ss_pred ---cceEEEEeeEEEEEEEeHHHHHHHHHHChHHH
Confidence 88999999999999999999999999999985
No 3
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.98 E-value=2.8e-31 Score=252.61 Aligned_cols=183 Identities=20% Similarity=0.269 Sum_probs=167.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhcCCCHHHHHhcCCHHHHHHHHHHHhHHHhcCCcCCC
Q 008614 336 SETTRAHKINQKLRQIKHWKHFKDISTFVRAKIREAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFE 415 (559)
Q Consensus 336 s~~~~~~~~~~~~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~~~~ll~~Lp~~Lr~~i~~~l~~~~l~~v~~F~ 415 (559)
++.++..+++++|+.+++||+.+++|++||.||++||+|.|+. ++.+++++++.||++||.++..+.+.++++++|+|+
T Consensus 3 ~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~-~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f~ 81 (202)
T 3bpz_A 3 AMDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREKIVNFNCRKLVASMPLFA 81 (202)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-cCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCCchh
Confidence 4556777899999999999999999999999999999999984 788999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhhhhhccCCCCCC
Q 008614 416 NWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGH 495 (559)
Q Consensus 416 ~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~ 495 (559)
+++++++..++..++++.|.|||+|+++||.++++|||.+|.|++...+|. ...+++|++|||.+++ .+.+
T Consensus 82 ~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~g~--~~~l~~G~~fGe~~~~--~~~~----- 152 (202)
T 3bpz_A 82 NADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNK--EMKLSDGSYFGEICLL--TRGR----- 152 (202)
T ss_dssp TSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEECTTSC--CEEEETTCEECHHHHH--HCSB-----
T ss_pred cCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEECCCe--EEEEcCCCEeccHHHh--cCCC-----
Confidence 999999999999999999999999999999999999999999998876664 3478999999998774 2322
Q ss_pred CCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614 496 LPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 531 (559)
Q Consensus 496 ~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 531 (559)
+.++++|.++|+++.|++++|.++++++|++..
T Consensus 153 ---~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~ 185 (202)
T 3bpz_A 153 ---RTASVRADTYCRLYSLSVDNFNEVLEEYPMMRR 185 (202)
T ss_dssp ---CSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHH
T ss_pred ---cccEEEEeeEEEEEEEEHHHHHHHHHHCHHHHH
Confidence 789999999999999999999999999999853
No 4
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.97 E-value=7.3e-32 Score=258.54 Aligned_cols=185 Identities=17% Similarity=0.322 Sum_probs=165.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhcCCCHHHHHhcCCHHHHHHHHHHHhHHHhcCCcCCC
Q 008614 336 SETTRAHKINQKLRQIKHWKHFKDISTFVRAKIREAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFE 415 (559)
Q Consensus 336 s~~~~~~~~~~~~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~~~~ll~~Lp~~Lr~~i~~~l~~~~l~~v~~F~ 415 (559)
++.++..+++++|+.+++||+++++|++||.||++||+|.|..+++.+++++++.||++||.++..+++..++ ++|+|+
T Consensus 6 ~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~~~~f~ 84 (212)
T 3ukn_A 6 RMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-QLPLFE 84 (212)
T ss_dssp ------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-GSGGGT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHHH-hcHHhh
Confidence 5566677899999999999999999999999999999999999999999999999999999999999998877 899999
Q ss_pred CCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhhhhhccCCCCCC
Q 008614 416 NWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGH 495 (559)
Q Consensus 416 ~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~ 495 (559)
++++++++.++..++++.|.|||+|+++||.++++|||.+|.|++..++ . .+..+++|++|||.++. .+.
T Consensus 85 ~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~-~-~~~~l~~G~~fGe~~~~--~~~------ 154 (212)
T 3ukn_A 85 SASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLKDN-T-VLAILGKGDLIGSDSLT--KEQ------ 154 (212)
T ss_dssp TCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEESSS-C-EEEEECTTCEEECSCCS--SSS------
T ss_pred cCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEECC-e-EEEEecCCCCcCcHHhc--cCC------
Confidence 9999999999999999999999999999999999999999999988644 3 57899999999998763 121
Q ss_pred CCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614 496 LPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 531 (559)
Q Consensus 496 ~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 531 (559)
.+++.++++|.++|+++.|++++|.++++++|++..
T Consensus 155 ~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~ 190 (212)
T 3ukn_A 155 VIKTNANVKALTYCDLQYISLKGLREVLRLYPEYAQ 190 (212)
T ss_dssp CCBBCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHH
T ss_pred CCCcceEEEEcccEEEEEEeHHHHHHHHHHChHHHH
Confidence 112889999999999999999999999999999964
No 5
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.87 E-value=4e-22 Score=192.36 Aligned_cols=210 Identities=13% Similarity=0.112 Sum_probs=135.5
Q ss_pred HHHHHHHHHHHHHHhhcceeEEEeeecCCCceEeeCCCcceehhhhHHHHHHHHHHHHHHHhhhceeccchhhhhhhhhh
Q 008614 25 IENKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHISSELREADKKENQRKKFKHLWQ 104 (559)
Q Consensus 25 ~Wd~~~~~~~~~~~~~~P~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~f~~Di~l~f~t~y~~~~~~~~~~~~~~ 104 (559)
.||.+++++.++++++.++..+ + ..+......+..+|.++|++|.+|++++|.++..
T Consensus 9 ~f~~~i~~lil~~~~~~~~~~~-~---------~~~~~~~~~l~~~d~~~~~iF~~e~~lr~~~~~~------------- 65 (223)
T 1orq_C 9 LVELGVSYAALLSVIVVVVECT-M---------QLSGEYLVRLYLVDLILVIILWADYAYRAYKSGD------------- 65 (223)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHH-H---------HHTTCTTTHHHHHHHHHHHHHHHHHHHHHHTTSC-------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHh-c---------ccChhhhhHHHHHHHHHHHHHHHHHHHHHccccc-------------
Confidence 5888877777777654432100 0 1112234467899999999999999999998632
Q ss_pred hhcccccCCceeecChhhHhhhhhhhhhhhcccccceeeeeeccCCCCcchHHHHHHHHHHHHHHHHHhHHHHHHhhhHH
Q 008614 105 QLKNFKKGGREVLEDPMVRMWMLFFIDGLAILPIPQVLVIFPIRDTGFSTAMTFFVLQYLLRVIRTYFLFTDAIEVSGVI 184 (559)
Q Consensus 105 ~~~~~~~~~g~~v~d~~~I~~~~F~~Dlls~lP~~~i~~~~~~~~~~~~~~~~~~~l~rl~Rl~R~~~l~~~~~~~~~~i 184 (559)
+++=.++ +++|++|++|++.... +.. +......++.+|++|++|++|+.+...+....+
T Consensus 66 ---------------~~~y~~~-~iiDllailP~~~~~~----~~~-~~~~~~~lr~lRllRllR~~r~~~~~~~~~~~l 124 (223)
T 1orq_C 66 ---------------PAGYVKK-TLYEIPALVPAGLLAL----IEG-HLAGLGLFRLVRLLRFLRILLIISRGSKFLSAI 124 (223)
T ss_dssp ---------------HHHHHHH-HHHHCTTHHHHHHHHH----HHH-HHHTTTCHHHHHHHHHHHHHHHHHSCSSHHHHH
T ss_pred ---------------HHHHHHH-hHHHHHHHHHHHHHHH----Hhc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122244 8999999999975431 000 000012345555555555555544222211111
Q ss_pred hhhh-HHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhHHHhhcccCCCCCcceecCCCcccccccccccCCCCCCCCcc
Q 008614 185 ADAT-WGIFAFYVLLYLQSGHMFGALWYYYAIEKATDCWREASENHTGRSHSYVFCNKCFGDYKLLNDSCPISTGNTTRY 263 (559)
Q Consensus 185 ~~~~-~~~~~~~l~~~~l~~H~~aC~w~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sWi~~~~~~~~~~~~~~ 263 (559)
.... ..++...++..++..|+.||++|.+.. ++
T Consensus 125 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~---------------------------~~------------------- 158 (223)
T 1orq_C 125 ADAADKIRFYHLFGAVMLTVLYGAFAIYIVEY---------------------------PD------------------- 158 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS---------------------------SS-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------------------CC-------------------
Confidence 1110 012333344445568999999887531 00
Q ss_pred ccchhhhhhhcCccccCchhHHHHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008614 264 NFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETT 339 (559)
Q Consensus 264 ~~g~~~~~~~~~~~~~~~~~~~Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~~~ 339 (559)
+++....|..|+||+++||||+||||++|.|..|++++++.|++|..++|+.+|.+++...
T Consensus 159 ---------------~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~ 219 (223)
T 1orq_C 159 ---------------PNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQ 219 (223)
T ss_dssp ---------------TTCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------cCCCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0112236889999999999999999999999999999999999999999999999987654
No 6
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.82 E-value=1e-19 Score=165.13 Aligned_cols=138 Identities=19% Similarity=0.298 Sum_probs=116.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHhHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEc
Q 008614 384 IDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSK 463 (559)
Q Consensus 384 ~~~ll~~Lp~~Lr~~i~~~l~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~ 463 (559)
.+++++.||++||.++..+++.+.++++|+|++++++.++.++..++.+.|.+|+.|+++||.++.+|||.+|.|++..+
T Consensus 5 ~~~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~ 84 (160)
T 4f8a_A 5 TEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQD 84 (160)
T ss_dssp ----------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEET
T ss_pred hHHHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEEC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999998774
Q ss_pred CceEEEEEecCCCeeehhhhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614 464 SKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 531 (559)
Q Consensus 464 ~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 531 (559)
+. .+..+++|++|||.++. .. ...++.++++|.++|+++.+++++|.++++++|++..
T Consensus 85 ~~--~~~~~~~G~~fG~~~~~---~~-----~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~ 142 (160)
T 4f8a_A 85 DE--VVAILGKGDVFGDVFWK---EA-----TLAQSCANVRALTYCDLHVIKRDALQKVLEFYTAFSH 142 (160)
T ss_dssp TE--EEEEEETTCEEECCTTT---CS-----SCCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHH
T ss_pred CE--EEEEecCCCEeCcHHHh---cC-----cccceEEEEEECCceEEEEEcHHHHHHHHHHHHHHHH
Confidence 43 57899999999998763 22 0012789999999999999999999999999999953
No 7
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.80 E-value=2.7e-19 Score=192.34 Aligned_cols=230 Identities=11% Similarity=0.164 Sum_probs=140.5
Q ss_pred cCC-ChHHHHHHHHHHHHHHHHHhhcceeEEEeeecCCCceE-----------------eeCCCcceehhhhHHHHHHHH
Q 008614 17 YRK-AIAAAIENKRYLLLNVIAMILDPFFFYIPDLKDEIKCI-----------------HCNDTLGITATVIRSILDFLK 78 (559)
Q Consensus 17 ~P~-s~~~~~Wd~~~~~~~~~~~~~~P~~~y~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~d~~f 78 (559)
+|+ |...+.++.++++++++++++..+. ..|......... .........+.++|.+++++|
T Consensus 174 ~p~sS~~a~~f~~~~i~~Illsii~~~le-T~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~i~~~iF 252 (514)
T 2r9r_B 174 YPESSGPARIIAIVSVMVILISIVSFCLE-TLPIFRDENEDMHGGGVTFHTYSQSTIGYQQSTSFTDPFFIVETLCIIWF 252 (514)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHTCSTTTTSCCCCHHHHHHHHHSSCCCTTCCCHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhhhh-ccccccccccccccccccccccccccccccccchhhhHHHHHHHHHHHHH
Confidence 465 5777888888777777765543321 011110000000 000112346789999999999
Q ss_pred HHHHHHHhhhceeccchhhhhhhhhhhhcccccCCceeecChhhHhhhhhhhhhhhcccccceeeeeeccCCCC-c----
Q 008614 79 LLHISSELREADKKENQRKKFKHLWQQLKNFKKGGREVLEDPMVRMWMLFFIDGLAILPIPQVLVIFPIRDTGF-S---- 153 (559)
Q Consensus 79 ~~Di~l~f~t~y~~~~~~~~~~~~~~~~~~~~~~~g~~v~d~~~I~~~~F~~Dlls~lP~~~i~~~~~~~~~~~-~---- 153 (559)
.+|++++|.++-- +..... +.|.++|+++++|+.+.... +.... +
T Consensus 253 tiE~ilR~~~~~~---------------------k~~Y~k------s~wniiDli~iip~~i~l~~---~~~~~~~~~~~ 302 (514)
T 2r9r_B 253 SFEFLVRFFACPS---------------------KAGFFT------NIMNIIDIVAIIPYYVTIFL---TESNKSVLQFQ 302 (514)
T ss_dssp HHHHHHHHHHSSC---------------------SSSSTT------SHHHHHHHHTTHHHHHHHHH---HHTSCSHHHHH
T ss_pred HHHHHHHHHhCCc---------------------HHHHHh------chhHHHHHHHHHHHHHHHHh---hhccccchhhh
Confidence 9999999997521 111222 44999999999998643221 11111 1
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHh---hhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhHHHhhcccC
Q 008614 154 TAMTFFVLQYLLRVIRTYFLFTDAIEV---SGVIADATWGIFAFYVLLYLQSGHMFGALWYYYAIEKATDCWREASENHT 230 (559)
Q Consensus 154 ~~~~~~~l~rl~Rl~R~~~l~~~~~~~---~~~i~~~~~~~~~~~l~~~~l~~H~~aC~w~~i~~~~~~~~~~~~~~~~~ 230 (559)
.....++++|++|++|++|+.+..... ...+..+ ...+...+++.++..+++||+.|++..
T Consensus 303 ~~~~~lrvlRllRvlRilkL~r~~~~l~~l~~tl~~s-~~~l~~ll~~l~i~~~if~~~~~~~e~--------------- 366 (514)
T 2r9r_B 303 NVRRVVQIFRIMRILRIFKLSRHSKGLQILGQTLKAS-MRELGLLIFFLFIGVILFSSAVYFAEA--------------- 366 (514)
T ss_dssp TTHHHHHHHHHHGGGGGGGGGGSCHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHT---------------
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhheeec---------------
Confidence 112355666666666666666543222 1111111 112222223333447778887765321
Q ss_pred CCCCcceecCCCcccccccccccCCCCCCCCccccchhhhhhhcCccccCchhHHHHHHHHHHhHhhcccccCCCCcCCh
Q 008614 231 GRSHSYVFCNKCFGDYKLLNDSCPISTGNTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSAFGQDLETSDDV 310 (559)
Q Consensus 231 ~~~~~~~~~~~~~~~~sWi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Yl~slYwa~~T~tTvGyGdi~p~t~ 310 (559)
|. +++.+..|..|+||+++||||+||||+.|.|.
T Consensus 367 -----------------~~-----------------------------~~~~F~s~~~a~y~~~vT~TTvGYGDi~P~t~ 400 (514)
T 2r9r_B 367 -----------------DE-----------------------------RDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTI 400 (514)
T ss_dssp -----------------TC-----------------------------TTCSCSSHHHHHHHHHHHHTTCCCSSSCCCSH
T ss_pred -----------------cC-----------------------------CCccccchhhhhheeeeEEEecccCCCCCCCc
Confidence 00 11223457889999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008614 311 GENIFAIWMTIYGVVLFVFLIGRMQSETT 339 (559)
Q Consensus 311 ~E~~~~i~~mi~G~~~fa~iig~i~s~~~ 339 (559)
.++++++++|++|.+++++.+|.+.+..+
T Consensus 401 ~gr~f~~~~~l~G~~~l~l~iavI~~~f~ 429 (514)
T 2r9r_B 401 GGKIVGSLCAIAGVLTIALPVPVIVSNFN 429 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred chHhhehhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999985444
No 8
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.76 E-value=3.7e-18 Score=151.34 Aligned_cols=131 Identities=17% Similarity=0.219 Sum_probs=113.5
Q ss_pred cCCHHHHHHHHHHHhHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEE
Q 008614 390 DLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGL 469 (559)
Q Consensus 390 ~Lp~~Lr~~i~~~l~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~ 469 (559)
++|+.+|.+...+...++++++++|++++++.++.++..++.+.|.+|++|+++||.++.+|||.+|.|++..+ |. .+
T Consensus 7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~-g~-~~ 84 (139)
T 3ocp_A 7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKE-GV-KL 84 (139)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEET-TE-EE
T ss_pred cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEEC-CE-EE
Confidence 68888999988999999999999999999999999999999999999999999999999999999999998654 43 67
Q ss_pred EEecCCCeeehhhhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhhh
Q 008614 470 KRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQS 532 (559)
Q Consensus 470 ~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~~ 532 (559)
..+++|++|||.++. .+.+ +.++++|.++|+++.|++++|.++++++|.++++
T Consensus 85 ~~~~~G~~fGe~~~l--~~~~--------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~r~ 137 (139)
T 3ocp_A 85 CTMGPGKVFGELAIL--YNCT--------RTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHT 137 (139)
T ss_dssp EEECTTCEESCHHHH--HCCC--------CSSEEEESSCEEEEEEEHHHHHHHHTC-------
T ss_pred EEeCCCCEeccHHHH--CCCC--------cceEEEECcceEEEEEcHHHHHHHHhhChHhhhh
Confidence 899999999999764 2322 7899999999999999999999999999998654
No 9
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.69 E-value=1.2e-15 Score=142.56 Aligned_cols=138 Identities=13% Similarity=0.232 Sum_probs=114.7
Q ss_pred HHHHHhcCCHHH----HHHHHHHHhHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEE
Q 008614 384 IDSLVSDLPDDT----AKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQIS 459 (559)
Q Consensus 384 ~~~ll~~Lp~~L----r~~i~~~l~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~ 459 (559)
+....+.++|.| +.+...+...+.++++|+|++++++.++.++..++.+.|.+|++|+++|+.++.+|+|.+|.|+
T Consensus 13 ~~~~~~~~~~dli~~~~~~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~ 92 (187)
T 3gyd_A 13 ENLYFQGMYPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVN 92 (187)
T ss_dssp HHHHTSTTGGGCEEEEEGGGGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEE
T ss_pred cceeecCCchHHhccCccHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEE
Confidence 334444444433 3444455567899999999999999999999999999999999999999999999999999999
Q ss_pred EEE--cCc-eEEEEEecCCCeeehhhhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614 460 IYS--KSK-LIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 531 (559)
Q Consensus 460 v~~--~~~-~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 531 (559)
+.. .+| ...+..+++|++|||.++. .+.+ +.++++|.++|+++.+++++|.++++++|++..
T Consensus 93 v~~~~~~g~~~~~~~~~~G~~fGe~~~l--~~~~--------~~~~v~A~~~~~v~~i~~~~~~~l~~~~p~~~~ 157 (187)
T 3gyd_A 93 VIKDIPNKGIQTIAKVGAGAIIGEMSMI--DGMP--------RSASCVASLPTDFAVLSRDALYQLLANMPKLGN 157 (187)
T ss_dssp EEEEETTTEEEEEEEEETTCEESHHHHH--HCCC--------CSSEEEEEEEEEEEEEEHHHHHHHHHHCHHHHH
T ss_pred EEEECCCCCeEEEEEccCCCeeeeHHHh--CCCC--------eeEEEEECCCeEEEEEcHHHHHHHHHHChHHHH
Confidence 654 344 4467799999999999763 2322 789999999999999999999999999999964
No 10
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.69 E-value=2.5e-16 Score=143.25 Aligned_cols=124 Identities=13% Similarity=0.128 Sum_probs=108.2
Q ss_pred HHHHHHhHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE-cCc-eEEEEEecCC
Q 008614 398 QVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS-KSK-LIGLKRQEDG 475 (559)
Q Consensus 398 ~i~~~l~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~-~~~-~~~~~~l~~G 475 (559)
+-......+.++++|+|++++++.++.++..++.+.|.+|++|+++||.++.+|+|.+|.|++.. .+| ...+..+++|
T Consensus 30 ~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~~G 109 (161)
T 3idb_B 30 DDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNR 109 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEEETTEEEEEEEEESC
T ss_pred HHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEEcCCCCeEEEEEcCCC
Confidence 33345567899999999999999999999999999999999999999999999999999999654 333 4557799999
Q ss_pred CeeehhhhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614 476 NYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 531 (559)
Q Consensus 476 ~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 531 (559)
++|||.++. .+.+ +.++++|.++|+++.|++++|.++++++|.++.
T Consensus 110 ~~fGe~~~~--~~~~--------~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~ 155 (161)
T 3idb_B 110 GSFGELALM--YNTP--------RAATITATSPGALWGLDRVTFRRIIVKNNAKKR 155 (161)
T ss_dssp CEECGGGGT--CCCC--------CSSEEEESSSEEEEEEEHHHHHHHHHHHHHTSC
T ss_pred CEechHHHH--cCCC--------cccEEEECCCeEEEEEeHHHHHHHHHHCHHHHH
Confidence 999998774 2222 789999999999999999999999999999864
No 11
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.69 E-value=7.6e-16 Score=137.48 Aligned_cols=117 Identities=18% Similarity=0.201 Sum_probs=103.7
Q ss_pred HHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE---cCceEEEEEecCCCeeehh
Q 008614 405 RNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS---KSKLIGLKRQEDGNYCGEE 481 (559)
Q Consensus 405 ~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~---~~~~~~~~~l~~G~~fGe~ 481 (559)
.+.++++|+|.+++++.++.++..++.+.|.+|++|+++|+.++.+|||.+|.|++.. +++...+..+++|++||+.
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~ 83 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENMLAVVGPSELIGEL 83 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEEEEEECTTCEESGG
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEEEEEcCCcCEechH
Confidence 4678999999999999999999999999999999999999999999999999999764 3344567899999999998
Q ss_pred hhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614 482 IIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 531 (559)
Q Consensus 482 ~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 531 (559)
++. ... ++.++++|.++|+++.+++++|.++++++|++..
T Consensus 84 ~~~---~~~-------~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~ 123 (149)
T 2pqq_A 84 SLF---DPG-------PRTATGTALTEVKLLALGHGDLQPWLNVRPEVAT 123 (149)
T ss_dssp GGT---SCE-------ECSSEEEESSCEEEEEEEGGGHHHHHHHCTHHHH
T ss_pred Hhc---CCC-------CcceEEEEccceEEEEEeHHHHHHHHHhCcHHHH
Confidence 763 221 1788999999999999999999999999999853
No 12
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.67 E-value=6.9e-16 Score=136.67 Aligned_cols=117 Identities=15% Similarity=0.164 Sum_probs=100.9
Q ss_pred HHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCc-eEE---EEEecCCCee
Q 008614 405 RNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSK-LIG---LKRQEDGNYC 478 (559)
Q Consensus 405 ~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~~-~~~---~~~l~~G~~f 478 (559)
.+.++++|+|++++++.++.++..++.+.|.+|++|+++|+.++.+|+|.+|.|++.. .+| ... +..+++|++|
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~f 84 (142)
T 3mdp_A 5 PERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIF 84 (142)
T ss_dssp TTGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEE
T ss_pred HHHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEe
Confidence 3578899999999999999999999999999999999999999999999999999764 333 334 7799999999
Q ss_pred ehhhhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614 479 GEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 531 (559)
Q Consensus 479 Ge~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 531 (559)
||.++. ... ++.++++|.++|+++.+++++|.++++++|++..
T Consensus 85 G~~~~~---~~~-------~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~ 127 (142)
T 3mdp_A 85 GVSSLI---KPY-------HYTSSARATKPVRVVDINGARLREMSENNQALGQ 127 (142)
T ss_dssp CGGGSS---TTC-------BCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHH
T ss_pred chHHHc---CCC-------CceEEEEECCcEEEEEEeHHHHHHHHHHChHHHH
Confidence 998773 222 1788999999999999999999999999999963
No 13
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.66 E-value=1.2e-16 Score=141.05 Aligned_cols=126 Identities=35% Similarity=0.626 Sum_probs=103.3
Q ss_pred HHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE-cCce-EEEE--EecCCCeeehh
Q 008614 406 NLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS-KSKL-IGLK--RQEDGNYCGEE 481 (559)
Q Consensus 406 ~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~-~~~~-~~~~--~l~~G~~fGe~ 481 (559)
++++++|+|++++++.++.++..++.+.|.+||+|+++||.++.+|||.+|.|++.. .+|. ..+. .+++|++|||.
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~ 85 (137)
T 1wgp_A 6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDE 85 (137)
T ss_dssp CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSSTH
T ss_pred HHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEEcCCCcceeeeeeeecCCCEecHH
Confidence 467899999999999999999999999999999999999999999999999999653 3332 2234 99999999998
Q ss_pred hhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhhh
Q 008614 482 IIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQS 532 (559)
Q Consensus 482 ~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~~ 532 (559)
++.+.+... +....|.+.++++|.++|+++.|++++|.++++++|+++++
T Consensus 86 ~l~~~~~~~-~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~k 135 (137)
T 1wgp_A 86 LLTWALDPK-SGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRSGPS 135 (137)
T ss_dssp HHHHHHCSS-CCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCCTTT
T ss_pred HHHHHhccc-cccccccceeEEEEeEEEEEEEECHHHHHHHHHHCHhhHhh
Confidence 741113432 11111236789999999999999999999999999999764
No 14
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.65 E-value=1.3e-15 Score=137.56 Aligned_cols=118 Identities=16% Similarity=0.217 Sum_probs=105.0
Q ss_pred HHhHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehh
Q 008614 402 HFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEE 481 (559)
Q Consensus 402 ~l~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~ 481 (559)
....++++++|+|++++++.++.++..++.+.|.+|++|+++||.++.+|||.+|.|+++.++ . .+..+++|++|||.
T Consensus 34 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~-~-~~~~~~~G~~fGe~ 111 (154)
T 3pna_A 34 AALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNN-E-WATSVGEGGSFGEL 111 (154)
T ss_dssp HHHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEETT-E-EEEEECTTCEECCH
T ss_pred HHHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEECC-E-EEEEecCCCEeeeh
Confidence 344678899999999999999999999999999999999999999999999999999988744 3 57799999999999
Q ss_pred hhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614 482 IIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 531 (559)
Q Consensus 482 ~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 531 (559)
++. .+.+ +.++++|.++|+++.|++++|.++++++|..+.
T Consensus 112 ~~~--~~~~--------~~~~v~A~~~~~~~~i~~~~~~~ll~~~~~~~~ 151 (154)
T 3pna_A 112 ALI--YGTP--------RAATVKAKTNVKLWGIDRDSYRRILMGSTLRKR 151 (154)
T ss_dssp HHH--HCCC--------CSSEEEESSCEEEEEEEHHHHHHHTHHHHHHC-
T ss_pred Hhh--cCCC--------cceEEEECcceEEEEEeHHHHHHHHHhChHHHh
Confidence 774 2332 789999999999999999999999999999864
No 15
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.65 E-value=2.5e-15 Score=132.50 Aligned_cols=113 Identities=19% Similarity=0.267 Sum_probs=101.5
Q ss_pred HHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhh
Q 008614 405 RNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIID 484 (559)
Q Consensus 405 ~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~ 484 (559)
.+.++++|+|++++++.++.++..++.+.|.+|++|+++||.++.+|||.+|.|++...+ ...+++|++||+.++.
T Consensus 10 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~----~~~~~~G~~~G~~~~~ 85 (138)
T 1vp6_A 10 WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN----PVELGPGAFFGEMALI 85 (138)
T ss_dssp HHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS----CEEECTTCEECHHHHH
T ss_pred HHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC----cceECCCCEeeehHhc
Confidence 468999999999999999999999999999999999999999999999999999987544 2488999999999764
Q ss_pred hhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614 485 WAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 531 (559)
Q Consensus 485 ~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 531 (559)
.+.+ +.++++|.++|+++.+++++|.++++++|++..
T Consensus 86 --~~~~--------~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~ 122 (138)
T 1vp6_A 86 --SGEP--------RSATVSAATTVSLLSLHSADFQMLCSSSPEIAE 122 (138)
T ss_dssp --HCCC--------CSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHH
T ss_pred --cCCC--------ceeEEEECCCEEEEEECHHHHHHHHHHCHHHHH
Confidence 2222 778999999999999999999999999999853
No 16
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.64 E-value=1.2e-15 Score=153.27 Aligned_cols=134 Identities=16% Similarity=0.205 Sum_probs=119.5
Q ss_pred HHHhcCCHHHHHHHHHHHhHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCc
Q 008614 386 SLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSK 465 (559)
Q Consensus 386 ~ll~~Lp~~Lr~~i~~~l~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~ 465 (559)
.-..++|+..|.+...+...+.++++++|++++++.++.++..++.+.|.+|++|+++||.++.+|||.+|.|++..++
T Consensus 19 ~~~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~g- 97 (299)
T 3shr_A 19 GSMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKEG- 97 (299)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEETT-
T ss_pred cccCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEECC-
Confidence 3456799999999999999999999999999999999999999999999999999999999999999999999986644
Q ss_pred eEEEEEecCCCeeehhhhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614 466 LIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 531 (559)
Q Consensus 466 ~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 531 (559)
. .+..+.+|++|||.++. .+.+ |.+|++|.++|+++.|++++|.+++..+|..+.
T Consensus 98 ~-~~~~~~~G~~fGe~~ll--~~~~--------~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~~~~ 152 (299)
T 3shr_A 98 V-KLCTMGPGKVFGELAIL--YNCT--------RTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKH 152 (299)
T ss_dssp E-EEEEECTTCEESCSGGG--TTTB--------CCSEEEESSCEEEEEECHHHHHHHHHHHHHHHH
T ss_pred E-EEEEeCCCCeeeHhHHh--cCCC--------CCcEEEEcCCeEEEEEcHHHHHHHhhHhHHHHH
Confidence 3 57899999999999774 2322 889999999999999999999999999998653
No 17
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.64 E-value=2.2e-15 Score=135.30 Aligned_cols=118 Identities=17% Similarity=0.222 Sum_probs=102.0
Q ss_pred HHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCc-eEEEEEecCCCeeehh
Q 008614 405 RNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSK-LIGLKRQEDGNYCGEE 481 (559)
Q Consensus 405 ~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~~-~~~~~~l~~G~~fGe~ 481 (559)
.+.++++++|++++++.++.++..++.+.|.+|++|+++|+.++.+|||.+|.|++.. .+| ...+..+++|++|||.
T Consensus 11 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~ 90 (154)
T 2z69_A 11 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEA 90 (154)
T ss_dssp HHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----CCEEECTTEEESGG
T ss_pred HHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEEEEEccCCCeeccH
Confidence 4678999999999999999999999999999999999999999999999999999764 233 3457799999999999
Q ss_pred hhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614 482 IIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 531 (559)
Q Consensus 482 ~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 531 (559)
.+. ... |.+.++++|.++|+++.|++++|.++++++|++..
T Consensus 91 ~~~---~~~------~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~ 131 (154)
T 2z69_A 91 MMF---MDT------PNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLAL 131 (154)
T ss_dssp GGG---SSC------SBCSSEEEESSSEEEEEEEHHHHHHHHTTCHHHHH
T ss_pred hhc---cCC------CCCceEEEEccceEEEEECHHHHHHHHHHChHHHH
Confidence 763 222 22678999999999999999999999999999853
No 18
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.64 E-value=2.9e-15 Score=134.34 Aligned_cols=82 Identities=15% Similarity=0.147 Sum_probs=66.5
Q ss_pred HHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHH------H--------HHHHHHHHHHHHHH
Q 008614 286 LLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQS------E--------TTRAHKINQKLRQI 351 (559)
Q Consensus 286 Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s------~--------~~~~~~~~~~~~~i 351 (559)
|..|+||+++|+|||||||++|.|..+++++++.+++|..++++.+|++++ . .++.++..++++++
T Consensus 53 ~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~i 132 (148)
T 3vou_A 53 PLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEAI 132 (148)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677999999999999999999999999999999999999999999999983 1 22223445668899
Q ss_pred HHHHHhCCCCHHHHHH
Q 008614 352 KHWKHFKDISTFVRAK 367 (559)
Q Consensus 352 ~~~m~~~~lp~~L~~r 367 (559)
++++++++.|++|+.|
T Consensus 133 ~~~~~~~~~~~~L~~R 148 (148)
T 3vou_A 133 EKKLAEHSRQGSLVPR 148 (148)
T ss_dssp HHHHHHHTTC------
T ss_pred HHHHHhcCCCcCCCCC
Confidence 9999999999999876
No 19
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.62 E-value=6.3e-16 Score=138.92 Aligned_cols=56 Identities=9% Similarity=0.143 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008614 284 KKLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETT 339 (559)
Q Consensus 284 ~~Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~~~ 339 (559)
..|..|+||+++|+|||||||++|.|..+++++++.+++|..++|+.+|.+++...
T Consensus 83 ~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~ 138 (155)
T 2a9h_A 83 ISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFV 138 (155)
T ss_dssp TSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45888999999999999999999999999999999999999999999999996654
No 20
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.62 E-value=7.4e-15 Score=137.61 Aligned_cols=117 Identities=14% Similarity=0.156 Sum_probs=102.7
Q ss_pred HHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCc-eEEEEEecCCCeeehh
Q 008614 405 RNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSK-LIGLKRQEDGNYCGEE 481 (559)
Q Consensus 405 ~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~~-~~~~~~l~~G~~fGe~ 481 (559)
..++++++.|.+++++.++.+...++.+.|.+|++|+++||.++.+|||.+|.|+++. .+| ...+..+++|++|||.
T Consensus 6 ~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~~~~~~~g~~~ge~ 85 (194)
T 3dn7_A 6 TALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQTTQFAIENWWLSDY 85 (194)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEECCH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEEEEEccCCcEEeeh
Confidence 4577888999999999999999999999999999999999999999999999999654 334 4557799999999987
Q ss_pred -hhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614 482 -IIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 531 (559)
Q Consensus 482 -~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 531 (559)
++. ... ++.++++|.++|+++.+++++|.++++++|++..
T Consensus 86 ~~~~---~~~-------~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~ 126 (194)
T 3dn7_A 86 MAFQ---KQQ-------PADFYIQSVENCELLSITYTEQENLFERIPALER 126 (194)
T ss_dssp HHHH---HTC-------BCSSEEEESSCEEEEEEEHHHHHHHHHHCTTHHH
T ss_pred HHHh---cCC-------CCceEEEEECCEEEEEEeHHHHHHHHHhCHHHHH
Confidence 553 322 1788999999999999999999999999999864
No 21
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.62 E-value=1.1e-14 Score=138.56 Aligned_cols=114 Identities=12% Similarity=0.162 Sum_probs=99.4
Q ss_pred hcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCc-eEEEEEecCCCeeehhhhh
Q 008614 408 LGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSK-LIGLKRQEDGNYCGEEIID 484 (559)
Q Consensus 408 l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~~-~~~~~~l~~G~~fGe~~l~ 484 (559)
|+++|+|++++++.++.++..++.+.|.+|++|+++||.++.+|||.+|.|+++. .+| ...+..+++|++|||.++.
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~ 80 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEMSLL 80 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEEEEEECTTCEECHHHHH
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEeehhhc
Confidence 4689999999999999999999999999999999999999999999999999754 333 4567899999999998764
Q ss_pred hhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614 485 WAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 531 (559)
Q Consensus 485 ~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 531 (559)
.+.+ +.++++|.++|+++.+++++|.++++++|++..
T Consensus 81 --~~~~--------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~ 117 (216)
T 4ev0_A 81 --DEGE--------RSASAVAVEDTELLALFREDYLALIRRLPLVAH 117 (216)
T ss_dssp --HCCB--------CSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHH
T ss_pred --CCCC--------cceEEEEcCCEEEEEEcHHHHHHHHHHCcHHHH
Confidence 2322 789999999999999999999999999999864
No 22
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.60 E-value=3.6e-16 Score=137.60 Aligned_cols=125 Identities=10% Similarity=0.133 Sum_probs=105.0
Q ss_pred HHHHHHHHHHhHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeC-CCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEe
Q 008614 394 DTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFS-ERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQ 472 (559)
Q Consensus 394 ~Lr~~i~~~l~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~-~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l 472 (559)
+.|.+-......++++++++|.+++++.++.++..++.+.|. +|++|+++||.++.+|||.+|.|+++..+|.. ..+
T Consensus 4 ~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~g~~--~~l 81 (134)
T 2d93_A 4 GSSGDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISHPDGKV--ENL 81 (134)
T ss_dssp SCCSTTHHHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEECSSSCE--EEE
T ss_pred hhcCHHHHHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEcCCCcE--EEe
Confidence 333333333445678899999999999999999999999999 99999999999999999999999988766653 679
Q ss_pred cCCCeeehhhhhhhhccCCCCCCCCCcccEE-EEcceEEEEEEeHHHHHHHHHhcHhhh
Q 008614 473 EDGNYCGEEIIDWAENQSSSHGHLPISTRTI-IAHTNVEGFTLKTDELKHGIALHRRFN 530 (559)
Q Consensus 473 ~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv-~A~~~~~l~~L~~~~f~~ll~~~P~~~ 530 (559)
++|++|||.++. ... ++.+++ +|.++|+++.|++++|.++++++++..
T Consensus 82 ~~G~~fG~~~~~---~~~-------~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~ 130 (134)
T 2d93_A 82 FMGNSFGITPTL---DKQ-------YMHGIVRTKVDDCQFVCIAQQDYWRILNHVEKSG 130 (134)
T ss_dssp CTTCEESCCSSS---CCE-------ECCSEEEESSSSEEEEEEEHHHHHHHSSCCSSSS
T ss_pred cCCCccChhHhc---CCC-------cceeEEEEEecceEEEEEeHHHHHHHHHHHHhcc
Confidence 999999998763 222 166788 999999999999999999999888653
No 23
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.59 E-value=2.6e-14 Score=138.35 Aligned_cols=119 Identities=11% Similarity=0.082 Sum_probs=105.4
Q ss_pred HhHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCc-eEEEEEecCCCeee
Q 008614 403 FGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSK-LIGLKRQEDGNYCG 479 (559)
Q Consensus 403 l~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~~-~~~~~~l~~G~~fG 479 (559)
...+.++++|+|++++++.++.++..++.+.|.+|++|+++|+.++.+|||.+|.|++.. .+| ...+..+++|++||
T Consensus 8 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G 87 (237)
T 3fx3_A 8 AQKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAVVSVFTRGESFG 87 (237)
T ss_dssp HHHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEEEEEEETTEEEC
T ss_pred HHHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEeCCCCEec
Confidence 345788999999999999999999999999999999999999999999999999999764 333 45678999999999
Q ss_pred hhhhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614 480 EEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 531 (559)
Q Consensus 480 e~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 531 (559)
+..++ .+.+ +.++++|.++|+++.+++++|.++++++|++..
T Consensus 88 ~~~~~--~~~~--------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~ 129 (237)
T 3fx3_A 88 EAVAL--RNTP--------YPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICI 129 (237)
T ss_dssp HHHHH--HTCC--------CSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHH
T ss_pred hHHHh--cCCC--------CCceEEECCceEEEEEcHHHHHHHHHHCHHHHH
Confidence 99764 2322 789999999999999999999999999999864
No 24
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.58 E-value=2e-14 Score=139.64 Aligned_cols=118 Identities=18% Similarity=0.261 Sum_probs=105.6
Q ss_pred HhHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhh
Q 008614 403 FGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEI 482 (559)
Q Consensus 403 l~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~ 482 (559)
+...+++++++|++++++.+..++..++.+.|.+|+.|+++||.++.+|+|.+|.|+++..++. .+..+++|++|||.+
T Consensus 122 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~~-~~~~l~~g~~fGe~~ 200 (246)
T 3of1_A 122 MYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQG-VINKLKDHDYFGEVA 200 (246)
T ss_dssp HSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTTE-EEEEEETTCEECHHH
T ss_pred HHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCCc-eEEEcCCCCcccHHH
Confidence 4456778899999999999999999999999999999999999999999999999998875543 578999999999997
Q ss_pred hhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614 483 IDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 531 (559)
Q Consensus 483 l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 531 (559)
+. .+.+ |.++++|.++|+++.|++++|.+++..+|++.+
T Consensus 201 ~~--~~~~--------~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~~~~ 239 (246)
T 3of1_A 201 LL--NDLP--------RQATVTATKRTKVATLGKSGFQRLLGPAVDVLK 239 (246)
T ss_dssp HH--HTCB--------CSSEEEESSCEEEEEEEHHHHHHHCTTHHHHHH
T ss_pred Hh--CCCC--------cccEEEECCCEEEEEEeHHHHHHHhccHHHHHh
Confidence 74 2332 899999999999999999999999999999854
No 25
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.57 E-value=1.5e-14 Score=125.05 Aligned_cols=58 Identities=10% Similarity=0.135 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008614 284 KKLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETTRA 341 (559)
Q Consensus 284 ~~Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~~~~~ 341 (559)
..|..|+||+++|+|||||||++|.|..+++++++.+++|..++|+.+|.+++...+.
T Consensus 60 ~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~ 117 (122)
T 2ih3_C 60 ITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGR 117 (122)
T ss_dssp CSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3488899999999999999999999999999999999999999999999999776543
No 26
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.57 E-value=1.4e-14 Score=139.30 Aligned_cols=117 Identities=21% Similarity=0.281 Sum_probs=103.7
Q ss_pred HHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--c-CceEEEEEecCCCeeehh
Q 008614 405 RNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--K-SKLIGLKRQEDGNYCGEE 481 (559)
Q Consensus 405 ~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~-~~~~~~~~l~~G~~fGe~ 481 (559)
.+.++++|+|++++++.++.++..++.+.|.+|++|+++||.++.+|||.+|.|++.. . ++...+..+++|++|||.
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~ 84 (227)
T 3d0s_A 5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGEL 84 (227)
T ss_dssp HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCH
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEEecCCCEEeeH
Confidence 4578999999999999999999999999999999999999999999999999999764 3 334557899999999998
Q ss_pred hhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614 482 IIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 531 (559)
Q Consensus 482 ~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 531 (559)
+++ ... ++.++++|.++|+++.+++++|.++++++|++..
T Consensus 85 ~~~---~~~-------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~ 124 (227)
T 3d0s_A 85 SIF---DPG-------PRTSSATTITEVRAVSMDRDALRSWIADRPEISE 124 (227)
T ss_dssp HHH---SCS-------CCSSEEEESSCEEEEEEEHHHHHHTTSSCHHHHH
T ss_pred HHc---CCC-------CceeEEEEcccEEEEEEeHHHHHHHHHHChHHHH
Confidence 774 322 1789999999999999999999999999999854
No 27
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.57 E-value=2.2e-14 Score=138.23 Aligned_cols=117 Identities=13% Similarity=0.100 Sum_probs=103.0
Q ss_pred HHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCc-eEEEEEecCCCeeehh
Q 008614 405 RNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSK-LIGLKRQEDGNYCGEE 481 (559)
Q Consensus 405 ~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~~-~~~~~~l~~G~~fGe~ 481 (559)
.+.++++|+|++++++.++.++..++.+.|.+|++|+++||.++.+|||.+|.|+++. .+| ...+..+++|++|||.
T Consensus 5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~ 84 (231)
T 3e97_A 5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERVLGDIYAPGVVGET 84 (231)
T ss_dssp HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEEEEEEESSEEESTT
T ss_pred HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEEEEecCCCCEEeeH
Confidence 4678999999999999999999999999999999999999999999999999999754 333 4457899999999999
Q ss_pred hhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614 482 IIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 531 (559)
Q Consensus 482 ~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 531 (559)
+++ ... ++.++++|.++|+++.+++++|.++++++|++..
T Consensus 85 ~~~---~~~-------~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~ 124 (231)
T 3e97_A 85 AVL---AHQ-------ERSASVRALTPVRTLMLHREHFELILRRHPRVLW 124 (231)
T ss_dssp TTT---CCC-------CCCEEEEESSCEEEEEECHHHHHHHHHHCHHHHH
T ss_pred HHh---CCC-------CceEEEEECCcEEEEEEeHHHHHHHHHHCHHHHH
Confidence 763 322 2789999999999999999999999999999864
No 28
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.56 E-value=2.6e-14 Score=145.78 Aligned_cols=116 Identities=15% Similarity=0.210 Sum_probs=104.1
Q ss_pred HHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCceEEEEEecCCCeeehhh
Q 008614 405 RNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSKLIGLKRQEDGNYCGEEI 482 (559)
Q Consensus 405 ~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~~~~~~~~l~~G~~fGe~~ 482 (559)
.+.++++|+|++++++.++.++..++.+.|.+|++|+++||.++++|||.+|.|+++. .+|...+..+++|++|||.+
T Consensus 12 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~G~~fGe~~ 91 (333)
T 4ava_A 12 VEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVAIIARALPGMIVGEIA 91 (333)
T ss_dssp HHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCEEEEEECTTCEESHHH
T ss_pred HHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEecCCCEeeHHH
Confidence 4688999999999999999999999999999999999999999999999999999764 44544678999999999997
Q ss_pred hhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614 483 IDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 531 (559)
Q Consensus 483 l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 531 (559)
+. .+.+ ++++++|.++|+++.|++++|.+++ ++|++..
T Consensus 92 l~--~~~~--------~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~~~~ 129 (333)
T 4ava_A 92 LL--RDSP--------RSATVTTIEPLTGWTGGRGAFATMV-HIPGVGE 129 (333)
T ss_dssp HH--HTCB--------CSSEEEESSCEEEEEECHHHHHHHH-HSTTHHH
T ss_pred hc--CCCC--------ceEEEEEecCEEEEEEcHHHHHHHH-hChHHHH
Confidence 74 2332 8899999999999999999999999 9999964
No 29
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.56 E-value=5.4e-14 Score=135.85 Aligned_cols=118 Identities=17% Similarity=0.184 Sum_probs=103.5
Q ss_pred HHHhcCCcCCCCCCHHHHHHHHhc--CeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE---cCceEEEEEecCCCeee
Q 008614 405 RNLLGQMQKFENWEDYSLDHLCGC--LKPVFFSERTTIISEGESIHEMLFVLEGQISIYS---KSKLIGLKRQEDGNYCG 479 (559)
Q Consensus 405 ~~~l~~v~~F~~~~~~~l~~l~~~--l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~---~~~~~~~~~l~~G~~fG 479 (559)
...++++|+|++++++.++.++.. .+.+.|.+|++|+++||.++.+|||.+|.|+++. +++...+..+++|++||
T Consensus 17 ~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~l~~~~~G~~fG 96 (232)
T 1zyb_A 17 FDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPYLIE 96 (232)
T ss_dssp HTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEEEEEEESSEEEC
T ss_pred HHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEEEEEccCCCeee
Confidence 467899999999999999999998 9999999999999999999999999999999754 33345678999999999
Q ss_pred hhhhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614 480 EEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 531 (559)
Q Consensus 480 e~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 531 (559)
|.+++ ... |.+.++++|.++|+++.+++++|.++++++|++..
T Consensus 97 ~~~~~---~~~------~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~ 139 (232)
T 1zyb_A 97 PQSLF---GMN------TNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRL 139 (232)
T ss_dssp GGGGS---SSC------CBCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHH
T ss_pred ehHHh---CCC------CCCceEEEEccceEEEEEEHHHHHHHhccCHHHHH
Confidence 98763 221 22688999999999999999999999999999853
No 30
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.55 E-value=8.1e-14 Score=133.02 Aligned_cols=116 Identities=15% Similarity=0.093 Sum_probs=101.3
Q ss_pred HHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCc-eEEEEEecCCCe--eeh
Q 008614 406 NLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSK-LIGLKRQEDGNY--CGE 480 (559)
Q Consensus 406 ~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~~-~~~~~~l~~G~~--fGe 480 (559)
++++++|+|++++++.++.+...++.+.|.+|++|+++||.++.+|||.+|.|+++. .+| ...+..+++|++ ||+
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~~~g~ 82 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREITLYRLFDMDMCLLSA 82 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESGGG
T ss_pred chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEEEEecCCCCeeehhH
Confidence 578999999999999999999999999999999999999999999999999999764 333 455779999999 788
Q ss_pred hhhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614 481 EIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 531 (559)
Q Consensus 481 ~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 531 (559)
.++. ... ++.++++|.++|+++.+++++|.++++++|++..
T Consensus 83 ~~~~---~~~-------~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~ 123 (220)
T 3dv8_A 83 SCIM---RSI-------QFEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVAN 123 (220)
T ss_dssp GGGC---TTC-------CCCCEEEESSCEEEEEEEHHHHHHHHHHCHHHHH
T ss_pred HHHh---CCC-------CCceEEEEeeeeEEEEEEHHHHHHHHHHCHHHHH
Confidence 8763 322 1788999999999999999999999999999864
No 31
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.54 E-value=2.9e-14 Score=138.47 Aligned_cols=115 Identities=16% Similarity=0.209 Sum_probs=103.7
Q ss_pred HHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhh
Q 008614 405 RNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIID 484 (559)
Q Consensus 405 ~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~ 484 (559)
.+.++++|+|++++++.++.++..++.+.|.+|++|+++||.++++|+|.+|.|++..++. .+..+++|++|||.++.
T Consensus 6 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~~~~--~~~~~~~g~~fGe~~l~ 83 (246)
T 3of1_A 6 EKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYVNDN--KVNSSGPGSSFGELALM 83 (246)
T ss_dssp HHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEESTTS--CCEEECTTCEECHHHHH
T ss_pred HHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEECCE--EEEecCCCCeeehhHHh
Confidence 5688999999999999999999999999999999999999999999999999999886544 36899999999999774
Q ss_pred hhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614 485 WAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 531 (559)
Q Consensus 485 ~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 531 (559)
.+.+ +.++++|.++|+++.|++++|.+++.++|..+.
T Consensus 84 --~~~~--------~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~ 120 (246)
T 3of1_A 84 --YNSP--------RAATVVATSDCLLWALDRLTFRKILLGSSFKKR 120 (246)
T ss_dssp --HTCC--------CSSEEEESSCEEEEEEEHHHHHHTTTTTTSHHH
T ss_pred --cCCC--------CCcEEEECCCeEEEEEEhHHHHHHHHHhHHHHH
Confidence 2332 889999999999999999999999999997643
No 32
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.54 E-value=2.1e-13 Score=131.03 Aligned_cols=118 Identities=13% Similarity=0.173 Sum_probs=93.0
Q ss_pred HHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cC-ceEEEEEecCCCeeehh
Q 008614 405 RNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KS-KLIGLKRQEDGNYCGEE 481 (559)
Q Consensus 405 ~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~-~~~~~~~l~~G~~fGe~ 481 (559)
...+++.++|.+++++.++.+...++.+.|.+|+.|+++||.++.+|||.+|.|+++. .+ +...+..+++|++|||.
T Consensus 10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~ 89 (230)
T 3iwz_A 10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELVLGYFGSGEFVGEM 89 (230)
T ss_dssp ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCG
T ss_pred hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEEeh
Confidence 4567889999999999999999999999999999999999999999999999999764 33 44567899999999998
Q ss_pred hhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhc-----Hhhhh
Q 008614 482 IIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALH-----RRFNQ 531 (559)
Q Consensus 482 ~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~-----P~~~~ 531 (559)
.++ .+. +++.++++|.++|+++.+++++|.++++++ |++..
T Consensus 90 ~~~--~~~-------~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~~~~ 135 (230)
T 3iwz_A 90 GLF--IES-------DTREVILRTRTQCELAEISYERLQQLFQTSLSPDAPRILY 135 (230)
T ss_dssp GGT--SCC-------SBCCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHHHHH
T ss_pred hhh--cCC-------CCceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcHHHH
Confidence 763 121 127889999999999999999999999999 98853
No 33
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.53 E-value=8.6e-15 Score=129.13 Aligned_cols=88 Identities=13% Similarity=0.155 Sum_probs=51.4
Q ss_pred HHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-HHHhCCCC
Q 008614 286 LLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETTRAH---KINQKLRQIKH-WKHFKDIS 361 (559)
Q Consensus 286 Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~~~~~~---~~~~~~~~i~~-~m~~~~lp 361 (559)
|..|+||+++|+|||||||++|.|..|++++++.|++|++++|+++|.+++...+.. +.+++.+.+++ ..+..+++
T Consensus 44 ~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 123 (137)
T 4h33_A 44 YPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKKPTNSSTQRANKITQLISETPDLT 123 (137)
T ss_dssp HHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC---------------------
T ss_pred HHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 778999999999999999999999999999999999999999999999995433211 11122222222 23345666
Q ss_pred HHHHHHHHHHHH
Q 008614 362 TFVRAKIREAKR 373 (559)
Q Consensus 362 ~~L~~rv~~y~~ 373 (559)
++.+..+++|.+
T Consensus 124 ~~~i~~l~~~l~ 135 (137)
T 4h33_A 124 KEEIAVVEQFLT 135 (137)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHh
Confidence 666666666554
No 34
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.53 E-value=7e-14 Score=140.34 Aligned_cols=120 Identities=18% Similarity=0.324 Sum_probs=105.8
Q ss_pred HHhHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEc---C-ceEEEEEecCCCe
Q 008614 402 HFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSK---S-KLIGLKRQEDGNY 477 (559)
Q Consensus 402 ~l~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~---~-~~~~~~~l~~G~~ 477 (559)
..+...++++++|++++++.+..++..++.+.|.+|++|+++||.++.+|+|.+|.|++... + +...+..+++|++
T Consensus 153 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~~~~l~~G~~ 232 (299)
T 3shr_A 153 TEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKGDW 232 (299)
T ss_dssp HHHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEEEEEEETTCE
T ss_pred HHHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceEEEEcCCCCE
Confidence 34567889999999999999999999999999999999999999999999999999997652 2 3356789999999
Q ss_pred eehhhhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614 478 CGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 531 (559)
Q Consensus 478 fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 531 (559)
|||.++. ... ++.++++|.++|+++.|++++|.++++++|++..
T Consensus 233 fGe~~ll---~~~-------~~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~~ 276 (299)
T 3shr_A 233 FGEKALQ---GED-------VRTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSN 276 (299)
T ss_dssp ECGGGGS---SSE-------ECSSEEEESSSEEEEEEEHHHHHHHHTTCCCCCH
T ss_pred eChHHHh---CCC-------CcceEEEECCCEEEEEEeHHHHHHHHccHHHHHH
Confidence 9999773 322 2889999999999999999999999999999953
No 35
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.53 E-value=8.1e-14 Score=134.34 Aligned_cols=113 Identities=15% Similarity=0.222 Sum_probs=99.1
Q ss_pred cCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE---cCceEEEEEecCCCeeehhhhhh
Q 008614 409 GQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS---KSKLIGLKRQEDGNYCGEEIIDW 485 (559)
Q Consensus 409 ~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~---~~~~~~~~~l~~G~~fGe~~l~~ 485 (559)
.++|+|++++++.++.++..++.+.|.||++|+++||.++.+|||.+|.|++.. +++...+..+++|++|||.+++
T Consensus 13 ~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~- 91 (232)
T 2gau_A 13 LLRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPYF- 91 (232)
T ss_dssp GSHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCEEEEECTTCEESHHHHH-
T ss_pred cccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEeCCCCEeeeehhh-
Confidence 367899999999999999999999999999999999999999999999999763 3334457899999999999764
Q ss_pred hhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614 486 AENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 531 (559)
Q Consensus 486 ~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 531 (559)
.+.+ +.++++|.++|+++.+++++|.++++++|++..
T Consensus 92 -~~~~--------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~ 128 (232)
T 2gau_A 92 -AEET--------CSSTAIAVENSKVLAIPVEAIEALLKGNTSFCR 128 (232)
T ss_dssp -HTSC--------CSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHH
T ss_pred -CCCC--------cceEEEEecceEEEEEEHHHHHHHHHHCHHHHH
Confidence 2222 789999999999999999999999999999863
No 36
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.52 E-value=1.6e-13 Score=136.96 Aligned_cols=119 Identities=17% Similarity=0.324 Sum_probs=104.4
Q ss_pred HhHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCc--eEEEEEecCCCee
Q 008614 403 FGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSK--LIGLKRQEDGNYC 478 (559)
Q Consensus 403 l~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~~--~~~~~~l~~G~~f 478 (559)
+...+++++++|+++++..+..++..++.+.|.+|++|+++||.++.+|+|.+|.|++.. .+| ...+..+++|++|
T Consensus 154 ~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~~l~~G~~f 233 (291)
T 2qcs_B 154 MYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYF 233 (291)
T ss_dssp HHHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEEEEEECTTCEE
T ss_pred HHHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEEEEEeCCCCEe
Confidence 345677889999999999999999999999999999999999999999999999999764 222 3467899999999
Q ss_pred ehhhhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614 479 GEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 531 (559)
Q Consensus 479 Ge~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 531 (559)
||.++. ... +|.+|++|.++|+++.|++++|.+++..+|++..
T Consensus 234 Ge~~ll---~~~-------~~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~ 276 (291)
T 2qcs_B 234 GEIALL---MNR-------PKAATVVARGPLKCVKLDRPRFERVLGPCSDILK 276 (291)
T ss_dssp CSGGGT---CCC-------CCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHT
T ss_pred cHHHHc---CCC-------CcceEEEECCcEEEEEEcHHHHHHHhccHHHHHH
Confidence 999773 322 1889999999999999999999999999999854
No 37
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.51 E-value=4.5e-14 Score=135.50 Aligned_cols=118 Identities=17% Similarity=0.222 Sum_probs=103.0
Q ss_pred HHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCc-eEEEEEecCCCeeehh
Q 008614 405 RNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSK-LIGLKRQEDGNYCGEE 481 (559)
Q Consensus 405 ~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~~-~~~~~~l~~G~~fGe~ 481 (559)
.+.++++|+|++++++.++.++..++.+.|.+|++|+++||.++.+|||.+|.|+++. .+| ...+..+++|++|||.
T Consensus 8 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~ 87 (227)
T 3dkw_A 8 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEA 87 (227)
T ss_dssp HHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBCCCEECTTEEESCT
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeH
Confidence 4678999999999999999999999999999999999999999999999999999654 333 3456799999999998
Q ss_pred hhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614 482 IIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 531 (559)
Q Consensus 482 ~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 531 (559)
+++ ... |.+.++++|.++|+++.+++++|.++++++|++..
T Consensus 88 ~~~---~~~------~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~ 128 (227)
T 3dkw_A 88 MMF---MDT------PNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLAL 128 (227)
T ss_dssp TTT---TTC------SBCSSCEEESSCCEEEEEESHHHHHHHSSCTHHHH
T ss_pred Hhc---CCC------CCCceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHH
Confidence 763 222 22678899999999999999999999999999864
No 38
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.50 E-value=1.3e-13 Score=137.59 Aligned_cols=119 Identities=16% Similarity=0.218 Sum_probs=106.1
Q ss_pred HHHhHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeeh
Q 008614 401 LHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGE 480 (559)
Q Consensus 401 ~~l~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fGe 480 (559)
.+...+.++++|+|++++++.++.++..++.+.|.+|++|+++||.++.+|+|.+|.|++..+ |. .+..+++|++|||
T Consensus 34 ~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~-g~-~~~~l~~G~~fGe 111 (291)
T 2qcs_B 34 MAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVN-NE-WATSVGEGGSFGE 111 (291)
T ss_dssp HHHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEET-TE-EEEEECTTCEECG
T ss_pred HHHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEEC-Ce-EEEEcCCCCccch
Confidence 344567899999999999999999999999999999999999999999999999999998774 43 5789999999999
Q ss_pred hhhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614 481 EIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 531 (559)
Q Consensus 481 ~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 531 (559)
.++. ... ++.++++|.++|+++.|++++|.+++..+|.+..
T Consensus 112 ~~l~---~~~-------~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~ 152 (291)
T 2qcs_B 112 LALI---YGT-------PRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKR 152 (291)
T ss_dssp GGGT---CCC-------BCSSEEEESSCEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred HHHh---cCC-------CCceEEEECCCEEEEEEEhHHHHHHHhhhHHHHH
Confidence 8773 222 2889999999999999999999999999998854
No 39
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.50 E-value=1.3e-13 Score=145.01 Aligned_cols=122 Identities=13% Similarity=0.137 Sum_probs=107.3
Q ss_pred HHHHhHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE-cCc-eEEEEEecCCCe
Q 008614 400 KLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS-KSK-LIGLKRQEDGNY 477 (559)
Q Consensus 400 ~~~l~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~-~~~-~~~~~~l~~G~~ 477 (559)
..+...+.++++++|++++++.+..++..++.+.|.+|++|+++||.++.+|+|.+|.|+++. .+| ...+..+.+|++
T Consensus 139 ~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~~~~G~~~~v~~l~~G~~ 218 (416)
T 3tnp_B 139 QRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGS 218 (416)
T ss_dssp HHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEECSSCEEEEEEEESCCE
T ss_pred HHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEEecCCCEEEEEEecCCCE
Confidence 345557889999999999999999999999999999999999999999999999999999764 333 445789999999
Q ss_pred eehhhhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614 478 CGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 531 (559)
Q Consensus 478 fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 531 (559)
|||.++. .+.+ |.+|++|.++|+++.|++++|.+++.++|..+.
T Consensus 219 fGe~all--~~~p--------r~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~~ 262 (416)
T 3tnp_B 219 FGELALM--YNTP--------KAATITATSPGALWGLDRVTFRRIIVKNNAKKR 262 (416)
T ss_dssp ECGGGGT--SCCC--------CSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHS
T ss_pred EeeHHHh--cCCC--------cccEEEEccCeEEEEEeehhhhhhhhcchhHHH
Confidence 9999874 2222 899999999999999999999999999998753
No 40
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.47 E-value=3.1e-13 Score=144.50 Aligned_cols=129 Identities=17% Similarity=0.209 Sum_probs=114.9
Q ss_pred CCHHHHHHHHHHHhHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCc---
Q 008614 391 LPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSK--- 465 (559)
Q Consensus 391 Lp~~Lr~~i~~~l~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~~--- 465 (559)
.|+..|.+-..+...+.++++++|++++++.++.++..++.+.|.+|++|+++||.++.+|+|.+|.|+++. .+|
T Consensus 27 ~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~~ 106 (469)
T 1o7f_A 27 KRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQD 106 (469)
T ss_dssp SCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGGG
T ss_pred CChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCCc
Confidence 567778777777888999999999999999999999999999999999999999999999999999999765 333
Q ss_pred eEEEEEecCCCeeehhhhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhh
Q 008614 466 LIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFN 530 (559)
Q Consensus 466 ~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~ 530 (559)
...+..+++|++|||.+ . .+.+ +.++++|.++|+++.|++++|.++++++|++.
T Consensus 107 ~~~~~~~~~G~~fGe~~-l--~~~~--------~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~~~ 160 (469)
T 1o7f_A 107 AVTICTLGIGTAFGESI-L--DNTP--------RHATIVTRESSELLRIEQEDFKALWEKYRQYM 160 (469)
T ss_dssp CEEEEEECTTCEECGGG-G--GTCB--------CSSEEEESSSEEEEEEEHHHHHHHHHHHGGGT
T ss_pred ceEEEEccCCCCcchhh-h--CCCC--------ccceEEEccceeEEEEcHHHHHHHHHhCHHHH
Confidence 25688999999999987 4 2333 88999999999999999999999999999865
No 41
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.47 E-value=1.1e-12 Score=124.13 Aligned_cols=111 Identities=14% Similarity=0.199 Sum_probs=93.0
Q ss_pred cCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCc-eEEEEEecCCCeeehhhhhhhhc
Q 008614 412 QKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSK-LIGLKRQEDGNYCGEEIIDWAEN 488 (559)
Q Consensus 412 ~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~~-~~~~~~l~~G~~fGe~~l~~~l~ 488 (559)
++++.++++.++.++..++.+.|.+|+.|+++|+.++.+|||.+|.|+++. .+| ...+..+++|++|||..++ .+
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~--~~ 79 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLF--EE 79 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEEEEEEETTCEESCTTTT--ST
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHHh--cC
Confidence 456778999999999999999999999999999999999999999999754 333 4567799999999998663 12
Q ss_pred cCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614 489 QSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 531 (559)
Q Consensus 489 ~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 531 (559)
. +++.++++|.++|+++.+++++|.++++++|++..
T Consensus 80 ~-------~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~ 115 (210)
T 3ryp_A 80 G-------QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILM 115 (210)
T ss_dssp T-------CBCSSEEEESSCEEEEEEEHHHHHHHHHHCTHHHH
T ss_pred C-------CCceEEEEECCcEEEEEEcHHHHHHHHHHChHHHH
Confidence 2 12788999999999999999999999999999864
No 42
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.47 E-value=1.6e-13 Score=142.76 Aligned_cols=119 Identities=14% Similarity=0.218 Sum_probs=106.4
Q ss_pred HHHhHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeeh
Q 008614 401 LHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGE 480 (559)
Q Consensus 401 ~~l~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fGe 480 (559)
.+...+.++++++|++++++.+..++..++.+.|.+|++|+++||.++.+|+|.+|.|+++.++. .+..+++|++|||
T Consensus 125 ~~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~~~~--~v~~l~~G~~fGe 202 (381)
T 4din_B 125 MTALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYVNGE--WVTNISEGGSFGE 202 (381)
T ss_dssp HHHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEETTE--EEEEEESSCCBCG
T ss_pred HHHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEECCe--EeeeCCCCCEEEc
Confidence 34456789999999999999999999999999999999999999999999999999999887443 5788999999999
Q ss_pred hhhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614 481 EIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 531 (559)
Q Consensus 481 ~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 531 (559)
.+++ .+.+ |.+|++|.++|+++.|++++|.+++.++|..+.
T Consensus 203 ~all--~~~~--------r~atv~A~~~~~l~~i~~~~f~~ll~~~~~~~~ 243 (381)
T 4din_B 203 LALI--YGTP--------RAATVKAKTDLKLWGIDRDSYRRILMGSTLRKR 243 (381)
T ss_dssp GGGT--SCCB--------CSSEEEESSSCEEEEEEHHHHHHHHHHHHHHHH
T ss_pred hHHh--cCCC--------cceEEEECCCEEEEEEchHHHHHhhhhhhHHHH
Confidence 9774 2222 889999999999999999999999999998854
No 43
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.46 E-value=6.7e-13 Score=117.63 Aligned_cols=53 Identities=13% Similarity=0.243 Sum_probs=50.4
Q ss_pred HHHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008614 285 KLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSE 337 (559)
Q Consensus 285 ~Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~ 337 (559)
.|..|+||+++|+|||||||++|.|..+++++++.+++|+.++++++|.+++.
T Consensus 40 ~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~ 92 (139)
T 3eff_K 40 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATW 92 (139)
T ss_dssp CHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999943
No 44
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.45 E-value=1.3e-12 Score=123.45 Aligned_cols=109 Identities=16% Similarity=0.226 Sum_probs=91.5
Q ss_pred CCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--c-CceEEEEEecCCCeeehhhhhhhhccCCCC
Q 008614 417 WEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--K-SKLIGLKRQEDGNYCGEEIIDWAENQSSSH 493 (559)
Q Consensus 417 ~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~-~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~ 493 (559)
++++.++.++..++.+.|.||++|+++||.++.+|||.+|.|+++. . ++...+..+++|++|||..++ .+.
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~--~~~---- 74 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLF--EKE---- 74 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTTC--C------
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCCcccHHHh--cCC----
Confidence 5788999999999999999999999999999999999999999764 3 344567899999999998663 121
Q ss_pred CCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614 494 GHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 531 (559)
Q Consensus 494 ~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 531 (559)
...+++.++++|.++|+++.+++++|.++++++|++..
T Consensus 75 ~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~ 112 (207)
T 2oz6_A 75 GSEQERSAWVRAKVECEVAEISYAKFRELSQQDSEILY 112 (207)
T ss_dssp ---CBCCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHH
T ss_pred CCCCCcceEEEECCcEEEEEECHHHHHHHHHHCHHHHH
Confidence 00002788999999999999999999999999999853
No 45
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.45 E-value=2.2e-13 Score=130.18 Aligned_cols=109 Identities=12% Similarity=0.129 Sum_probs=98.6
Q ss_pred HHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE-cC-ceEEEEEecCCCeeehhhh
Q 008614 406 NLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS-KS-KLIGLKRQEDGNYCGEEII 483 (559)
Q Consensus 406 ~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~-~~-~~~~~~~l~~G~~fGe~~l 483 (559)
.+++++|+|++++++.++.++..++.+.|.+|++|+++||.++.+|||.+|.|+++. .+ +...+..+++|++|||
T Consensus 4 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~~~~~~~G~~~G~--- 80 (220)
T 2fmy_A 4 MRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVYLAYEDKEFTLAILEAGDIFCT--- 80 (220)
T ss_dssp TCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEEEECSSCEEEEEEEETTCEEES---
T ss_pred hhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEEEEEcCCCCEeCC---
Confidence 467899999999999999999999999999999999999999999999999999743 33 3455789999999998
Q ss_pred hhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614 484 DWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 531 (559)
Q Consensus 484 ~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 531 (559)
+ +.++++|.++|+++.+++++|.++++++|++..
T Consensus 81 ------~--------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~ 114 (220)
T 2fmy_A 81 ------H--------TRAFIQAMEDTTILYTDIRNFQNIVVEFPAFSL 114 (220)
T ss_dssp ------C--------SSSEEEESSSEEEEEEEHHHHHHHHHHCTHHHH
T ss_pred ------c--------cceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHH
Confidence 2 678999999999999999999999999999854
No 46
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.43 E-value=2.5e-13 Score=141.36 Aligned_cols=120 Identities=17% Similarity=0.308 Sum_probs=105.3
Q ss_pred HHhHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEc---Cc-eEEEEEecCCCe
Q 008614 402 HFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSK---SK-LIGLKRQEDGNY 477 (559)
Q Consensus 402 ~l~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~---~~-~~~~~~l~~G~~ 477 (559)
.++..+++++++|.++++..+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++.. ++ ...+..+++|++
T Consensus 244 ~~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~v~~l~~Gd~ 323 (381)
T 4din_B 244 KMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSDY 323 (381)
T ss_dssp HHHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCCEEEEECTTCE
T ss_pred HHHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceEEEEEeCCCCE
Confidence 34556788899999999999999999999999999999999999999999999999998752 22 335789999999
Q ss_pred eehhhhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614 478 CGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 531 (559)
Q Consensus 478 fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 531 (559)
|||.+++ ... +|.++++|.++|+++.|++++|.+++..+|++.+
T Consensus 324 fGe~all---~~~-------~r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~~ 367 (381)
T 4din_B 324 FGEIALL---LNR-------PRAATVVARGPLKCVKLDRPRFERVLGPCSEILK 367 (381)
T ss_dssp ECTTGGG---SCC-------BCSSEEEESSCBEEEEEEHHHHHHHHCCHHHHHH
T ss_pred echHHHh---CCC-------CceeEEEEcCCEEEEEEeHHHHHHHHhhhHHHHH
Confidence 9999874 322 2889999999999999999999999999999854
No 47
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.42 E-value=8.3e-13 Score=141.15 Aligned_cols=117 Identities=13% Similarity=0.134 Sum_probs=102.6
Q ss_pred hHHHhcCCcCCCCCCHHHHHHHHhcCeeE-EeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhh
Q 008614 404 GRNLLGQMQKFENWEDYSLDHLCGCLKPV-FFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEI 482 (559)
Q Consensus 404 ~~~~l~~v~~F~~~~~~~l~~l~~~l~~~-~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~ 482 (559)
..+.++++++|.+++++.++.++..++.. .|.+|++|+++||.++.+|||.+|.|+++..++. .+..+++|++|||.+
T Consensus 335 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~~~~-~~~~l~~G~~fGe~~ 413 (469)
T 1o7f_A 335 IYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKG-VVCTLHEGDDFGKLA 413 (469)
T ss_dssp HHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEETTTE-EEEEEETTCEECGGG
T ss_pred HHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEEcCCe-eEEEecCCCEEEEeh
Confidence 35678999999999999999999999854 8999999999999999999999999998775443 578999999999997
Q ss_pred hhhhhccCCCCCCCCCcccEEEEcc-eEEEEEEeHHHHHHHHHhcHhhhh
Q 008614 483 IDWAENQSSSHGHLPISTRTIIAHT-NVEGFTLKTDELKHGIALHRRFNQ 531 (559)
Q Consensus 483 l~~~l~~~~~~~~~~~r~~tv~A~~-~~~l~~L~~~~f~~ll~~~P~~~~ 531 (559)
+. ... ++.+|++|.+ +|+++.|++++|.+++.++|++..
T Consensus 414 ll---~~~-------~~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~ 453 (469)
T 1o7f_A 414 LV---NDA-------PRAASIVLREDNCHFLRVDKEDFNRILRDVEANTV 453 (469)
T ss_dssp GT---CCS-------CCSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC--
T ss_pred hh---cCC-------CceEEEEEecCCEEEEEEcHHHHHHHHHHChHHHH
Confidence 73 322 2899999998 799999999999999999999854
No 48
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.41 E-value=5.1e-13 Score=140.58 Aligned_cols=119 Identities=13% Similarity=0.209 Sum_probs=103.7
Q ss_pred HhHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEc---------CceEEEEEec
Q 008614 403 FGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSK---------SKLIGLKRQE 473 (559)
Q Consensus 403 l~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~---------~~~~~~~~l~ 473 (559)
++..+++++++|++++++.+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++.. +....+..++
T Consensus 264 ~~~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~l~~l~ 343 (416)
T 3tnp_B 264 MYESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCF 343 (416)
T ss_dssp SSSSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CEEEEEC
T ss_pred HHHHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeEEEEeC
Confidence 3456788899999999999999999999999999999999999999999999999997642 2234578999
Q ss_pred CCCeeehhhhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614 474 DGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 531 (559)
Q Consensus 474 ~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 531 (559)
+|++|||.+++ ... +|.++|+|.++|+++.|++++|.+++..+|++..
T Consensus 344 ~G~~fGE~all---~~~-------~r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~i~~ 391 (416)
T 3tnp_B 344 RGQYFGELALV---TNK-------PRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMK 391 (416)
T ss_dssp TTCEESGGGGT---CCS-------CCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHT
T ss_pred CCCEecHHHHh---CCC-------CceeEEEEcCCeEEEEEEHHHHHHHhcchHHHHH
Confidence 99999999874 322 2899999999999999999999999999999854
No 49
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.41 E-value=6.8e-13 Score=127.03 Aligned_cols=108 Identities=8% Similarity=0.071 Sum_probs=96.5
Q ss_pred HhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE-cCc-eEEEEEecCCCeeehhhhh
Q 008614 407 LLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS-KSK-LIGLKRQEDGNYCGEEIID 484 (559)
Q Consensus 407 ~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~-~~~-~~~~~~l~~G~~fGe~~l~ 484 (559)
+++++|+|++++++.++.++..++.+.|.+|++|+++|+.++.+|+|.+|.|+++. .+| ...+..+++|++||
T Consensus 1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~~~~~~~G~~fG----- 75 (222)
T 1ft9_A 1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREISLFYLTSGDMFC----- 75 (222)
T ss_dssp -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEEETTEEEEEEEEETTCEEE-----
T ss_pred CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEEEEEcCCCCEec-----
Confidence 36789999999999999999999999999999999999999999999999999743 344 44577999999999
Q ss_pred hhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614 485 WAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 531 (559)
Q Consensus 485 ~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 531 (559)
.+ +.++++|.++|+++.+++++|.++++++|++..
T Consensus 76 ----~~--------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~ 110 (222)
T 1ft9_A 76 ----MH--------SGCLVEATERTEVRFADIRTFEQKLQTCPSMAW 110 (222)
T ss_dssp ----SC--------SSCEEEESSCEEEEEECHHHHHHHHHHCGGGHH
T ss_pred ----CC--------CCEEEEEccceEEEEEeHHHHHHHHHHChHHHH
Confidence 12 788999999999999999999999999999854
No 50
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.41 E-value=4.3e-12 Score=124.72 Aligned_cols=108 Identities=16% Similarity=0.245 Sum_probs=91.2
Q ss_pred CCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cC-ceEEEEEecCCCeeehhhhhhhhccCC
Q 008614 415 ENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KS-KLIGLKRQEDGNYCGEEIIDWAENQSS 491 (559)
Q Consensus 415 ~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~-~~~~~~~l~~G~~fGe~~l~~~l~~~~ 491 (559)
..++++.++.++..++.+.|.+|++|+++|+.++.+|||.+|.|+++. .+ +...+..+++|++|||..++ .+.
T Consensus 55 ~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~~~G~~~Ge~~~~--~~~-- 130 (260)
T 3kcc_A 55 KPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLF--EEG-- 130 (260)
T ss_dssp ----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEEEEEEETTCEESCTTTT--STT--
T ss_pred CCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehHHh--CCC--
Confidence 458999999999999999999999999999999999999999999764 33 34467899999999998763 122
Q ss_pred CCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614 492 SHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 531 (559)
Q Consensus 492 ~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 531 (559)
+++.++++|.++|+++.+++++|.++++++|++..
T Consensus 131 -----~~~~~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~~ 165 (260)
T 3kcc_A 131 -----QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILM 165 (260)
T ss_dssp -----CBCCSEEEESSCEEEEEEEHHHHHHHHHHCTHHHH
T ss_pred -----CCCceEEEECCCeEEEEEcHHHHHHHHHHCHHHHH
Confidence 12789999999999999999999999999999864
No 51
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.39 E-value=1.9e-12 Score=151.10 Aligned_cols=117 Identities=18% Similarity=0.242 Sum_probs=103.0
Q ss_pred HhHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE-----cCceEEEEEecCCCe
Q 008614 403 FGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS-----KSKLIGLKRQEDGNY 477 (559)
Q Consensus 403 l~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~-----~~~~~~~~~l~~G~~ 477 (559)
+-.+.|+++++|+++++..+.+|+..|+.+.|.+|++|+++||.++++|+|.+|.|.|.. .++...+..+++|+.
T Consensus 39 ~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~~~~~~~~~v~~l~~G~s 118 (999)
T 4f7z_A 39 IIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTA 118 (999)
T ss_dssp HHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSSSCTTSCEEEEEEETTCE
T ss_pred HHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecCCCCCCceeEEEecCCcc
Confidence 334678999999999999999999999999999999999999999999999999999864 223446889999999
Q ss_pred eehhhhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhh
Q 008614 478 CGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFN 530 (559)
Q Consensus 478 fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~ 530 (559)
||| ++. -+.+ |++|++|.++|++++|++++|..+..+||+..
T Consensus 119 FGE-all--~n~p--------RtaTv~a~~~s~l~~l~r~~F~~i~~~~~e~~ 160 (999)
T 4f7z_A 119 FGE-SIL--DNTP--------RHATIVTRESSELLRIEQEDFKALWEKYRQYM 160 (999)
T ss_dssp ECG-GGG--GTCC--------CSSEEEESSSEEEEEEEHHHHHHHHHHHHHHH
T ss_pred hhh-hhc--cCCC--------cceEEEeccceEEEEEEHHHHHHHHHhChHHH
Confidence 999 553 2332 99999999999999999999999999999854
No 52
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.38 E-value=3.8e-12 Score=121.11 Aligned_cols=111 Identities=14% Similarity=0.225 Sum_probs=89.3
Q ss_pred CcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCc-eEEEEEecCCCeeehhhhhhhh
Q 008614 411 MQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSK-LIGLKRQEDGNYCGEEIIDWAE 487 (559)
Q Consensus 411 v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~~-~~~~~~l~~G~~fGe~~l~~~l 487 (559)
-|.|...++.....+...++.+.|.+|++|+++|+.++.+|||.+|.|+++. .+| ...+..+++|++|||..++ .
T Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~~--~ 81 (213)
T 1o5l_A 4 DKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIF--S 81 (213)
T ss_dssp ---------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEEEEEECSSEESSGGGTT--S
T ss_pred cccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEecCCCEeeeHHHh--c
Confidence 3677778888999999999999999999999999999999999999999654 334 4557799999999998763 1
Q ss_pred ccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhh
Q 008614 488 NQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFN 530 (559)
Q Consensus 488 ~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~ 530 (559)
+. +++.++++|.++|+++.+++++|.++++++|++.
T Consensus 82 ~~-------~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~ 117 (213)
T 1o5l_A 82 SE-------PRFPVNVVAGENSKILSIPKEVFLDLLMKDRELL 117 (213)
T ss_dssp SS-------CBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHH
T ss_pred CC-------CCceEEEEEccceEEEEEeHHHHHHHHHHCHHHH
Confidence 22 1278899999999999999999999999999985
No 53
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.36 E-value=2.7e-12 Score=142.93 Aligned_cols=133 Identities=12% Similarity=0.157 Sum_probs=111.1
Q ss_pred HHHhcCCHHHHHHHHHHHhHHHhcCCcCCCCCCHHHHHHHHhcCe-eEEeCCCCEEEccCCccceEEEEEEeEEEEEEcC
Q 008614 386 SLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLK-PVFFSERTTIISEGESIHEMLFVLEGQISIYSKS 464 (559)
Q Consensus 386 ~ll~~Lp~~Lr~~i~~~l~~~~l~~v~~F~~~~~~~l~~l~~~l~-~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~ 464 (559)
.++...| ..|.+-......+.++++++|++++++.++.++..++ .+.|.+|++|+++||.++.+|||.+|.|+++..+
T Consensus 13 ~iL~k~p-~~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~g 91 (694)
T 3cf6_E 13 MILRKPP-GQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYG 91 (694)
T ss_dssp HHHHSCG-GGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEETT
T ss_pred HHHcCCh-hhCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEeC
Confidence 4444333 3344434444567899999999999999999999998 7899999999999999999999999999987754
Q ss_pred ceEEEEEecCCCeeehhhhhhhhccCCCCCCCCCcccEEEEcc-eEEEEEEeHHHHHHHHHhcHhhh
Q 008614 465 KLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHT-NVEGFTLKTDELKHGIALHRRFN 530 (559)
Q Consensus 465 ~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~-~~~l~~L~~~~f~~ll~~~P~~~ 530 (559)
+ ..+..+++|++|||.+++ .+.+ +.++++|.+ +|+++.|++++|.++++++|+++
T Consensus 92 ~-~il~~l~~Gd~fGe~al~--~~~~--------~~~tv~A~edd~~ll~I~~~~f~~ll~~~p~l~ 147 (694)
T 3cf6_E 92 K-GVVCTLHEGDDFGKLALV--NDAP--------RAASIVLREDNCHFLRVDKEDFNRILRDVEANT 147 (694)
T ss_dssp T-EEEEEEETTCEECHHHHH--HTCB--------CSSEEEECSSSEEEEEEEHHHHHHHTTTTCCCC
T ss_pred C-EEEEEeCCCCEeehHHHh--CCCC--------ceEEEEEeeCceEEEEEeHHHHHHHHHHCHHHH
Confidence 4 467899999999998764 2322 789999999 59999999999999999999984
No 54
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.33 E-value=5.9e-12 Score=122.82 Aligned_cols=112 Identities=14% Similarity=0.119 Sum_probs=95.8
Q ss_pred HhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cC-ceEEEEEecCCCeeehhhh
Q 008614 407 LLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KS-KLIGLKRQEDGNYCGEEII 483 (559)
Q Consensus 407 ~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~-~~~~~~~l~~G~~fGe~~l 483 (559)
++.+...+..++++.++.+...++.+.|.+|++|+++|+.++.+|||.+|.|++.. .+ +...+..+++|++||| .+
T Consensus 10 ~~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~-~l 88 (250)
T 3e6c_C 10 FCGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGK-LY 88 (250)
T ss_dssp CCCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEEEEEECTTCEECC-CS
T ss_pred hhhhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEee-ec
Confidence 34444445889999999999999999999999999999999999999999999754 33 3446779999999999 44
Q ss_pred hhhhccCCCCCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614 484 DWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 531 (559)
Q Consensus 484 ~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 531 (559)
.+. +.++++|.++|+++.+++++|.++++++|++..
T Consensus 89 ----~~~--------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~ 124 (250)
T 3e6c_C 89 ----PTG--------NNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIF 124 (250)
T ss_dssp ----CCS--------CCEEEEESSSEEEEEECHHHHHHHHHHCTHHHH
T ss_pred ----CCC--------CceEEEEcccEEEEEEcHHHHHHHHHHCHHHHH
Confidence 221 678999999999999999999999999999853
No 55
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.32 E-value=1.2e-11 Score=105.28 Aligned_cols=54 Identities=17% Similarity=0.230 Sum_probs=50.8
Q ss_pred HHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008614 286 LLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETT 339 (559)
Q Consensus 286 Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~~~ 339 (559)
|..|+||+++|+|||||||++|.|..+++++++.+++|..++++.++.+++...
T Consensus 50 ~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~ 103 (114)
T 2q67_A 50 PIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQ 103 (114)
T ss_dssp HHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667999999999999999999999999999999999999999999999986654
No 56
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.28 E-value=1.1e-12 Score=109.73 Aligned_cols=55 Identities=9% Similarity=0.178 Sum_probs=51.0
Q ss_pred HHHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008614 285 KLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETT 339 (559)
Q Consensus 285 ~Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~~~ 339 (559)
.|..|+||++.|+|||||||++|.|..+++++++.+++|..++++.+|.+++...
T Consensus 40 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~ 94 (103)
T 2k1e_A 40 SYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFV 94 (103)
T ss_dssp CGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGG
T ss_pred cHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667999999999999999999999999999999999999999999999996544
No 57
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.27 E-value=3.5e-11 Score=140.40 Aligned_cols=115 Identities=12% Similarity=0.120 Sum_probs=99.3
Q ss_pred HhHHHhcCCcCCCCCCHHHHHHHHhcCeeEE-eCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehh
Q 008614 403 FGRNLLGQMQKFENWEDYSLDHLCGCLKPVF-FSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEE 481 (559)
Q Consensus 403 l~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~-~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~ 481 (559)
...+.+.++|.|++++...++.|+..+.... +..|++|+++||.++.+|||.+|.|+|+..+.. .+..+++|++|||.
T Consensus 334 ~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~~~~~-~v~~L~~Gd~FGEl 412 (999)
T 4f7z_A 334 IIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKG-VVCTLHEGDDFGKL 412 (999)
T ss_dssp HHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEETTTE-EEEEEETTCEECGG
T ss_pred HHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEEcCCc-ceEEecCCCcccch
Confidence 3457789999999999999999999999766 467999999999999999999999998864433 57899999999999
Q ss_pred hhhhhhccCCCCCCCCCcccEEEEcce-EEEEEEeHHHHHHHHHhcHh
Q 008614 482 IIDWAENQSSSHGHLPISTRTIIAHTN-VEGFTLKTDELKHGIALHRR 528 (559)
Q Consensus 482 ~l~~~l~~~~~~~~~~~r~~tv~A~~~-~~l~~L~~~~f~~ll~~~P~ 528 (559)
++. ... +|.+|++|.++ |++++++++||.+++.+-.+
T Consensus 413 ALL---~~~-------PR~aTV~a~~d~c~fl~i~k~df~~il~~~e~ 450 (999)
T 4f7z_A 413 ALV---NDA-------PRAASIVLREDNCHFLRVDKEDGNRILRDVEA 450 (999)
T ss_dssp GGT---CSC-------BCSSEEEESSSSEEEEEEEHHHHHHHHHHHHH
T ss_pred hhc---cCC-------CeeEEEEEecCceEEEEeeHHHHHHHHhHHHH
Confidence 884 333 29999999985 99999999999999976543
No 58
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.26 E-value=7e-11 Score=114.73 Aligned_cols=105 Identities=12% Similarity=0.174 Sum_probs=88.7
Q ss_pred HHHHHHHHhcCe---eEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cC-ceEEEEEecCCCeeehhhhhhhhccCCC
Q 008614 419 DYSLDHLCGCLK---PVFFSERTTIISEGESIHEMLFVLEGQISIYS--KS-KLIGLKRQEDGNYCGEEIIDWAENQSSS 492 (559)
Q Consensus 419 ~~~l~~l~~~l~---~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~-~~~~~~~l~~G~~fGe~~l~~~l~~~~~ 492 (559)
++.++.|..... .+.|.+|++|+++|+.++.+|||.+|.|+++. .+ +...+..+++|++||+.+++ .+. +
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~l~~~~~g~~~G~~~~~---~~~-~ 105 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEITVALLRENSVFGVLSLL---TGN-K 105 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEEEEEECTTCEESCHHHH---SSC-C
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEcchHHh---CCC-C
Confidence 678888888888 99999999999999999999999999999754 33 34567899999999998764 322 0
Q ss_pred CCCCCCcccEEEEcceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614 493 HGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ 531 (559)
Q Consensus 493 ~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~P~~~~ 531 (559)
..+..+++|.++|+++.+++++|.++++++|++..
T Consensus 106 ----~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~ 140 (243)
T 3la7_A 106 ----SDRFYHAVAFTPVELLSAPIEQVEQALKENPELSM 140 (243)
T ss_dssp ----SBCCEEEEESSSEEEEEEEHHHHHHHHTTCHHHHH
T ss_pred ----CcceEEEEEccceEEEEEcHHHHHHHHHHCHHHHH
Confidence 01457899999999999999999999999999864
No 59
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.23 E-value=8.3e-11 Score=96.99 Aligned_cols=54 Identities=17% Similarity=0.215 Sum_probs=50.6
Q ss_pred HHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008614 286 LLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETT 339 (559)
Q Consensus 286 Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~~~ 339 (559)
|..|+||+++|+|||||||++|.|..+++++++.+++|..++++.+|.+++..+
T Consensus 33 ~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~ 86 (97)
T 3ouf_A 33 PIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQ 86 (97)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677999999999999999999999999999999999999999999999986543
No 60
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.22 E-value=1.2e-10 Score=112.70 Aligned_cols=107 Identities=13% Similarity=0.195 Sum_probs=85.6
Q ss_pred CCCHHHHHHHHh--cCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCc-eEEEEEecCCCeeehhhhhhhhccC
Q 008614 416 NWEDYSLDHLCG--CLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSK-LIGLKRQEDGNYCGEEIIDWAENQS 490 (559)
Q Consensus 416 ~~~~~~l~~l~~--~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~~-~~~~~~l~~G~~fGe~~l~~~l~~~ 490 (559)
+++++.++.+.. ..+.+.|.+|++|+++||.++.+|||.+|.|+++. .+| ...+..+ +|++|||..++ ...
T Consensus 3 ~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~-~G~~~Ge~~~~---~~~ 78 (238)
T 2bgc_A 3 NAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYY-KGAFVIMSGFI---DTE 78 (238)
T ss_dssp -CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEEEEEE-ESSEEEESBCT---TTC
T ss_pred CCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEEEEEc-CCCEecchhhh---cCC
Confidence 578888888884 59999999999999999999999999999999754 344 4445677 99999998663 221
Q ss_pred CCCCCCCCcccEEEEc-ceEEEEEEeHHHHHHHHHhcHhhhh
Q 008614 491 SSHGHLPISTRTIIAH-TNVEGFTLKTDELKHGIALHRRFNQ 531 (559)
Q Consensus 491 ~~~~~~~~r~~tv~A~-~~~~l~~L~~~~f~~ll~~~P~~~~ 531 (559)
.+++..++.|. ++|+++.+++++|.++++++|++..
T Consensus 79 -----~~~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~~ 115 (238)
T 2bgc_A 79 -----TSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFF 115 (238)
T ss_dssp -----CBSCCCEEEECSSEEEEEEEEHHHHHHHHHHCHHHHH
T ss_pred -----CcCcceeEEEEEcceEEEEEeHHHHHHHHHHCHHHHH
Confidence 00014667777 5999999999999999999999853
No 61
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=99.13 E-value=1e-10 Score=93.28 Aligned_cols=52 Identities=13% Similarity=0.199 Sum_probs=49.4
Q ss_pred HHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008614 286 LLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSE 337 (559)
Q Consensus 286 Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~ 337 (559)
|..|+||+++|+||+||||++|.|..+++++++.+++|..++++.++.+++.
T Consensus 29 ~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~ 80 (82)
T 3ldc_A 29 WTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEF 80 (82)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6679999999999999999999999999999999999999999999998754
No 62
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=99.05 E-value=5.1e-10 Score=111.49 Aligned_cols=55 Identities=7% Similarity=-0.110 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHhHhhcccccC-CCC-cCChhh----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008614 283 PKKLLRCLHWGLQKLSAFGQD-LET-SDDVGE----NIFAIWMTIYGVVLFVFLIGRMQSE 337 (559)
Q Consensus 283 ~~~Yl~slYwa~~T~tTvGyG-di~-p~t~~E----~~~~i~~mi~G~~~fa~iig~i~s~ 337 (559)
+..+..|+||+++|+||+||| |+. |.+..- ..+..++++.|.++.+..+|.+.+.
T Consensus 178 F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~ 238 (285)
T 3rvy_A 178 FGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDA 238 (285)
T ss_dssp HSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677999999999999999 986 765543 7888999999999999999998854
No 63
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=99.03 E-value=4.5e-11 Score=109.02 Aligned_cols=52 Identities=13% Similarity=0.275 Sum_probs=49.3
Q ss_pred HHHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008614 285 KLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQS 336 (559)
Q Consensus 285 ~Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s 336 (559)
.|..|+||+++|+|||||||++|.|..+++++++.+++|++++++++|.+++
T Consensus 67 ~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~ 118 (166)
T 3pjs_K 67 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALAT 118 (166)
T ss_dssp STTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSS
T ss_pred CHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666999999999999999999999999999999999999999999999984
No 64
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.01 E-value=2.1e-09 Score=100.42 Aligned_cols=78 Identities=23% Similarity=0.264 Sum_probs=67.0
Q ss_pred EEeCCCCEEEccCCccceEEEEEEeEEEEEE--cC-ceEEEEEecCCCeeehhhhhhhhccCCCCCCCCCcccEEEEcce
Q 008614 432 VFFSERTTIISEGESIHEMLFVLEGQISIYS--KS-KLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTN 508 (559)
Q Consensus 432 ~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~-~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~ 508 (559)
+.|.+|++|+++||.++.+|+|.+|.|+++. .+ +...+..+++|++||| +++ ... ++.++++|.++
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~Ge-~~~---~~~-------~~~~~~~A~~~ 70 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGE-EAL---EGK-------AYRYTAEAMTE 70 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEEEEEECTTCEECG-GGG---TCS-------BCSSEEEESSS
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEecCCCEech-hhh---CCC-------CceeEEEECCc
Confidence 5799999999999999999999999999754 33 3456789999999999 874 322 17899999999
Q ss_pred EEEEEEeHHHHH
Q 008614 509 VEGFTLKTDELK 520 (559)
Q Consensus 509 ~~l~~L~~~~f~ 520 (559)
|+++.+++++|.
T Consensus 71 ~~v~~i~~~~~~ 82 (195)
T 3b02_A 71 AVVQGLEPRAMD 82 (195)
T ss_dssp EEEEEECGGGCC
T ss_pred EEEEEEcHHHcC
Confidence 999999999998
No 65
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=98.93 E-value=1.9e-09 Score=107.38 Aligned_cols=54 Identities=7% Similarity=0.101 Sum_probs=50.2
Q ss_pred HHHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008614 285 KLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSET 338 (559)
Q Consensus 285 ~Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~~ 338 (559)
.|..|+|||++|+|||||||++|.+...++++++.+++|.+++|+.+|.+.+..
T Consensus 82 s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~ 135 (301)
T 1xl4_A 82 SFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARF 135 (301)
T ss_dssp CHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477899999999999999999999999999999999999999999999877544
No 66
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=98.91 E-value=2e-09 Score=108.28 Aligned_cols=55 Identities=11% Similarity=0.143 Sum_probs=51.0
Q ss_pred HHHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008614 285 KLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETT 339 (559)
Q Consensus 285 ~Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~~~ 339 (559)
.|..|+||+++|+|||||||++|.|..+++++++.+++|.+++|+++|.+.+...
T Consensus 96 s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~ 150 (333)
T 1p7b_A 96 GFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFA 150 (333)
T ss_dssp STHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999999999999999999886544
No 67
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.89 E-value=4.9e-09 Score=103.99 Aligned_cols=77 Identities=12% Similarity=0.179 Sum_probs=60.5
Q ss_pred HHHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Q 008614 285 KLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETTRAHKINQKLRQIKHWKHFKDISTF 363 (559)
Q Consensus 285 ~Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~~~~~~~~~~~~~~i~~~m~~~~lp~~ 363 (559)
.|..|+||+++|+|||||||++|.|...++++++.+++|+.+++++++.+++...+. ++.....+++.+.+++.++.
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~~--~~~~i~~le~~~~~~~~~~~ 191 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSS--LRHGIGHIEAIFLKWHVPPE 191 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHTHHHHHHHTTTC--CC
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhhHHHHHHHHhccccchh
Confidence 589999999999999999999999999999999999999999999999999655432 22233344445555555443
No 68
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=98.84 E-value=1.1e-08 Score=95.98 Aligned_cols=84 Identities=20% Similarity=0.190 Sum_probs=67.2
Q ss_pred HHhcCeeEEeCCCCEEEccCCcc--ceEEEEEEeEEEEEE--cC-ceEEEEEecCCCeeehhhhhhhhccCCCCCCCCCc
Q 008614 425 LCGCLKPVFFSERTTIISEGESI--HEMLFVLEGQISIYS--KS-KLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPIS 499 (559)
Q Consensus 425 l~~~l~~~~~~~ge~I~~~Gd~~--~~~yfI~~G~v~v~~--~~-~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r 499 (559)
|...++.+.|.+|++|+++||.+ +.+|+|.+|.|+++. .+ +...+..+++|++||+ .+. .+.+ +
T Consensus 1 l~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~-~~l--~~~~--------~ 69 (202)
T 2zcw_A 1 MTQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFGE-EAL--FGQE--------R 69 (202)
T ss_dssp -----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEEEEEEECTTCEECT-HHH--HTCC--------B
T ss_pred CCccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCCEeee-hhc--CCCC--------c
Confidence 34667889999999999999999 999999999999754 33 4455779999999999 553 2332 7
Q ss_pred ccEEEEcceEEEEEEeHHHHH
Q 008614 500 TRTIIAHTNVEGFTLKTDELK 520 (559)
Q Consensus 500 ~~tv~A~~~~~l~~L~~~~f~ 520 (559)
.++++|.++|+++.+ +++|.
T Consensus 70 ~~~~~A~~~~~v~~i-~~~~~ 89 (202)
T 2zcw_A 70 IYFAEAATDVRLEPL-PENPD 89 (202)
T ss_dssp CSEEEESSCEEEEEC-CSSCC
T ss_pred ceEEEEcccEEEEEE-hHhcC
Confidence 889999999999999 98886
No 69
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=98.71 E-value=1.5e-08 Score=101.51 Aligned_cols=55 Identities=11% Similarity=0.107 Sum_probs=51.2
Q ss_pred HHHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008614 285 KLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETT 339 (559)
Q Consensus 285 ~Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~~~ 339 (559)
.|..|+|||++|||||||||+.|.+...++++++.+++|.+++|+++|.+.+..+
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~ 132 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMS 132 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778999999999999999999999999999999999999999999999986554
No 70
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.57 E-value=1.9e-07 Score=101.89 Aligned_cols=48 Identities=17% Similarity=0.345 Sum_probs=46.3
Q ss_pred HHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHH
Q 008614 286 LLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGR 333 (559)
Q Consensus 286 Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~ 333 (559)
|..|+||+++|+|||||||++|.|..+++++++++++|..++++.++.
T Consensus 52 ~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~ 99 (565)
T 4gx0_A 52 FMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPF 99 (565)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred hhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 567999999999999999999999999999999999999999999988
No 71
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.56 E-value=7.6e-08 Score=93.98 Aligned_cols=52 Identities=15% Similarity=0.267 Sum_probs=49.8
Q ss_pred HHHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008614 285 KLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQS 336 (559)
Q Consensus 285 ~Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s 336 (559)
.|..|+||+++|+|||||||++|.|...++++++.+++|+.+++++++.++.
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~ 144 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQ 144 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888999999999999999999999999999999999999999999999874
No 72
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.55 E-value=3.2e-07 Score=92.01 Aligned_cols=54 Identities=11% Similarity=0.275 Sum_probs=48.1
Q ss_pred HHHHHHHHhHhhcccccCCCCcC--ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008614 286 LLRCLHWGLQKLSAFGQDLETSD--DVGENIFAIWMTIYGVVLFVFLIGRMQSETT 339 (559)
Q Consensus 286 Yl~slYwa~~T~tTvGyGdi~p~--t~~E~~~~i~~mi~G~~~fa~iig~i~s~~~ 339 (559)
+..++|||+.|+|||||||+.|. +..-++++.+.+++|.++.|+.+|.+.+-.+
T Consensus 92 f~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~s 147 (340)
T 3sya_A 92 FVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKIS 147 (340)
T ss_dssp TTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45699999999999999999996 6789999999999999999999998875544
No 73
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.43 E-value=2.2e-07 Score=90.68 Aligned_cols=52 Identities=12% Similarity=0.130 Sum_probs=48.0
Q ss_pred HHHHHHHHhHhhcccccCCCCcCChh-------hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008614 286 LLRCLHWGLQKLSAFGQDLETSDDVG-------ENIFAIWMTIYGVVLFVFLIGRMQSE 337 (559)
Q Consensus 286 Yl~slYwa~~T~tTvGyGdi~p~t~~-------E~~~~i~~mi~G~~~fa~iig~i~s~ 337 (559)
|+.|+||++.|+|||||||++|.+.. -++++++.+++|..+++++++.+++.
T Consensus 202 ~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~ 260 (280)
T 3ukm_A 202 FLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCEL 260 (280)
T ss_dssp HHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred hhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67799999999999999999999885 49999999999999999999999853
No 74
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.39 E-value=2.1e-07 Score=92.28 Aligned_cols=53 Identities=9% Similarity=0.138 Sum_probs=48.8
Q ss_pred HHHHHHHHhHhhcccccCCCCcCChhhH------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008614 286 LLRCLHWGLQKLSAFGQDLETSDDVGEN------IFAIWMTIYGVVLFVFLIGRMQSET 338 (559)
Q Consensus 286 Yl~slYwa~~T~tTvGyGdi~p~t~~E~------~~~i~~mi~G~~~fa~iig~i~s~~ 338 (559)
|+.|+||+++|+|||||||++|.+..++ +++++.+++|..+++++++.+++..
T Consensus 225 ~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~ 283 (309)
T 3um7_A 225 KLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWL 283 (309)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7789999999999999999999998886 5999999999999999999988653
No 75
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.37 E-value=1.7e-06 Score=86.92 Aligned_cols=55 Identities=11% Similarity=0.286 Sum_probs=48.5
Q ss_pred HHHHHHHHHhHhhcccccCCCCc--CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008614 285 KLLRCLHWGLQKLSAFGQDLETS--DDVGENIFAIWMTIYGVVLFVFLIGRMQSETT 339 (559)
Q Consensus 285 ~Yl~slYwa~~T~tTvGyGdi~p--~t~~E~~~~i~~mi~G~~~fa~iig~i~s~~~ 339 (559)
.+..++|||+.|+|||||||+.| .+..-++++.+.+++|.++.|..+|-+.+-.+
T Consensus 94 sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~s 150 (343)
T 3spc_A 94 GFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMA 150 (343)
T ss_dssp SHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46779999999999999999986 48899999999999999999999998765443
No 76
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=98.24 E-value=1e-07 Score=97.02 Aligned_cols=50 Identities=14% Similarity=0.249 Sum_probs=47.4
Q ss_pred HHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008614 288 RCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSE 337 (559)
Q Consensus 288 ~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~ 337 (559)
.|+||+++|+||+||||++|.|..+++++++.+++|..+++++++.+++.
T Consensus 48 ~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~ 97 (336)
T 1lnq_A 48 VSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEF 97 (336)
T ss_dssp TTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTT
T ss_pred HHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999843
No 77
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=97.81 E-value=0.00019 Score=68.52 Aligned_cols=24 Identities=8% Similarity=0.049 Sum_probs=20.2
Q ss_pred eehhhhHHHHHHHHHHHHHHHhhh
Q 008614 65 ITATVIRSILDFLKLLHISSELRE 88 (559)
Q Consensus 65 ~~~~~~~~~~d~~f~~Di~l~f~t 88 (559)
..+..+|.++-++|.+|+++++-.
T Consensus 42 ~~l~~~e~~~~~iF~~E~~lri~~ 65 (229)
T 4dxw_A 42 ETIHLLDYGITIFFVIEILIRFIG 65 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788999999999999999874
No 78
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=95.51 E-value=0.0086 Score=51.63 Aligned_cols=46 Identities=11% Similarity=0.085 Sum_probs=34.7
Q ss_pred eehhhhHHHHHHHHHHHHHHHhhhceeccchhhhhhhhhhhhcccccCCceeecChhhHhhhhhhhhhhhccccc
Q 008614 65 ITATVIRSILDFLKLLHISSELREADKKENQRKKFKHLWQQLKNFKKGGREVLEDPMVRMWMLFFIDGLAILPIP 139 (559)
Q Consensus 65 ~~~~~~~~~~d~~f~~Di~l~f~t~y~~~~~~~~~~~~~~~~~~~~~~~g~~v~d~~~I~~~~F~~Dlls~lP~~ 139 (559)
..+..+|.++-++|.+|.++++-.+-- |++=.+ |=++|+++++|+.
T Consensus 37 ~~l~~~d~~~~~iFt~E~~lRl~~~~~----------------------------~~~y~~-~niiDllailp~~ 82 (132)
T 1ors_C 37 VRLYLVDLILVIILWADYAYRAYKSGD----------------------------PAGYVK-KTLYEIPALVPAG 82 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTS----------------------------TTTTTT-TCGGGTGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCC----------------------------HHHHHH-HHHHHHHHHHHHH
Confidence 346789999999999999999986421 111114 7789999999975
No 79
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=94.81 E-value=0.025 Score=49.67 Aligned_cols=24 Identities=8% Similarity=0.040 Sum_probs=21.4
Q ss_pred ehhhhHHHHHHHHHHHHHHHhhhc
Q 008614 66 TATVIRSILDFLKLLHISSELREA 89 (559)
Q Consensus 66 ~~~~~~~~~d~~f~~Di~l~f~t~ 89 (559)
.+..+|.++-++|.+|.++++..+
T Consensus 53 ~~~~id~~~~~iF~~Ey~lRl~~a 76 (147)
T 2kyh_A 53 RLYLVDLILVIILWADYAYRAYKS 76 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC
Confidence 467899999999999999999975
No 80
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=71.23 E-value=24 Score=28.53 Aligned_cols=67 Identities=15% Similarity=0.151 Sum_probs=46.5
Q ss_pred CeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhhhhhccCCCCCCCCCcccEEEEcce
Q 008614 429 LKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTN 508 (559)
Q Consensus 429 l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~ 508 (559)
+....+.||..+-.---..++++++++|++++..+++ ...+++|+.+= +... ....+++.++
T Consensus 38 v~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~~~---~~~l~~Gd~i~-------ip~~--------~~H~~~~~~~ 99 (114)
T 3fjs_A 38 VMRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGVDGA---QRRLHQGDLLY-------LGAG--------AAHDVNAITN 99 (114)
T ss_dssp EEEEEECTTCEEEEECCSSCEEEEEEESCEEEEETTE---EEEECTTEEEE-------ECTT--------CCEEEEESSS
T ss_pred EEEEEECCCCccCceeCCCcEEEEEEECEEEEEECCE---EEEECCCCEEE-------ECCC--------CcEEEEeCCC
Confidence 4455678888876544455789999999999877554 46899998753 1221 3456778888
Q ss_pred EEEEE
Q 008614 509 VEGFT 513 (559)
Q Consensus 509 ~~l~~ 513 (559)
++++.
T Consensus 100 ~~~~~ 104 (114)
T 3fjs_A 100 TSLLV 104 (114)
T ss_dssp EEEEE
T ss_pred cEEEE
Confidence 77554
No 81
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=65.58 E-value=35 Score=27.16 Aligned_cols=64 Identities=9% Similarity=0.081 Sum_probs=41.5
Q ss_pred EeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhhhhhccCCCCCCCCCcccEEEEcceEEEE
Q 008614 433 FFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGF 512 (559)
Q Consensus 433 ~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~ 512 (559)
.+.||..+-.-.-...++++|++|.+++..++. ...+++|+.+= +... ....+++.+.+.++
T Consensus 44 ~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i~~~---~~~l~~Gd~i~-------i~~~--------~~H~~~~~~~~~~~ 105 (114)
T 2ozj_A 44 SFADGESVSEEEYFGDTLYLILQGEAVITFDDQ---KIDLVPEDVLM-------VPAH--------KIHAIAGKGRFKML 105 (114)
T ss_dssp EEETTSSCCCBCCSSCEEEEEEEEEEEEEETTE---EEEECTTCEEE-------ECTT--------CCBEEEEEEEEEEE
T ss_pred EECCCCccccEECCCCeEEEEEeCEEEEEECCE---EEEecCCCEEE-------ECCC--------CcEEEEeCCCcEEE
Confidence 356776554333456789999999999876553 46899998752 1221 34456666777766
Q ss_pred EE
Q 008614 513 TL 514 (559)
Q Consensus 513 ~L 514 (559)
.+
T Consensus 106 ~i 107 (114)
T 2ozj_A 106 QI 107 (114)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 82
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=64.88 E-value=33 Score=31.63 Aligned_cols=68 Identities=13% Similarity=0.228 Sum_probs=51.9
Q ss_pred CeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhhhhhccCCCCCCCCCcccEEEEcce
Q 008614 429 LKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTN 508 (559)
Q Consensus 429 l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~ 508 (559)
+....+.||+.+-..--+.+++.+|++|++++..++. ...+++|+++= +... ....++|.++
T Consensus 39 ~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i~~~---~~~l~~Gd~~~-------~p~~--------~~H~~~a~~~ 100 (227)
T 3rns_A 39 ISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFIENN---KKTISNGDFLE-------ITAN--------HNYSIEARDN 100 (227)
T ss_dssp EEEEEECTTCEEEECSCSSCEEEEEEESEEEEEESSC---EEEEETTEEEE-------ECSS--------CCEEEEESSS
T ss_pred EEEEEECCCCccCccccCCCEEEEEEeCEEEEEECCE---EEEECCCCEEE-------ECCC--------CCEEEEECCC
Confidence 4455689999987776778899999999999877554 36899998752 1221 4567899999
Q ss_pred EEEEEE
Q 008614 509 VEGFTL 514 (559)
Q Consensus 509 ~~l~~L 514 (559)
|.++.+
T Consensus 101 ~~~l~i 106 (227)
T 3rns_A 101 LKLIEI 106 (227)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 999877
No 83
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=62.43 E-value=53 Score=25.93 Aligned_cols=68 Identities=12% Similarity=0.093 Sum_probs=44.6
Q ss_pred CeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhhhhhccCCCCCCCCCcccEEEEcce
Q 008614 429 LKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTN 508 (559)
Q Consensus 429 l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~ 508 (559)
+....+.||..+-.---...+++++++|.+.+..+++ ...+++|+.+= +.+. ....+++.++
T Consensus 42 ~~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~~~~---~~~l~~Gd~~~-------ip~~--------~~H~~~~~~~ 103 (115)
T 1yhf_A 42 ITVFSLDKGQEIGRHSSPGDAMVTILSGLAEITIDQE---TYRVAEGQTIV-------MPAG--------IPHALYAVEA 103 (115)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEESEEEEEETTE---EEEEETTCEEE-------ECTT--------SCEEEEESSC
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeCEEEEEECCE---EEEECCCCEEE-------ECCC--------CCEEEEECCC
Confidence 3445577887764332335689999999999876554 35899998863 1221 3455677777
Q ss_pred EEEEEE
Q 008614 509 VEGFTL 514 (559)
Q Consensus 509 ~~l~~L 514 (559)
++++.+
T Consensus 104 ~~~~~v 109 (115)
T 1yhf_A 104 FQMLLV 109 (115)
T ss_dssp EEEEEE
T ss_pred ceEEEE
Confidence 777665
No 84
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=60.43 E-value=24 Score=28.97 Aligned_cols=43 Identities=14% Similarity=0.296 Sum_probs=32.2
Q ss_pred EEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008614 432 VFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 478 (559)
Q Consensus 432 ~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~f 478 (559)
..+.||..+-.. ...+++++|++|++++..+ +. ...+++||.+
T Consensus 45 ~~~~pG~~~~~H-~~~~E~~~Vl~G~~~~~~~-g~--~~~l~~GD~v 87 (119)
T 3lwc_A 45 GRYAPGQSLTET-MAVDDVMIVLEGRLSVSTD-GE--TVTAGPGEIV 87 (119)
T ss_dssp EEECTTCEEEEE-CSSEEEEEEEEEEEEEEET-TE--EEEECTTCEE
T ss_pred EEECCCCCcCcc-CCCCEEEEEEeCEEEEEEC-CE--EEEECCCCEE
Confidence 456788765443 3678999999999998764 42 4689999986
No 85
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=56.86 E-value=54 Score=25.92 Aligned_cols=68 Identities=10% Similarity=0.101 Sum_probs=44.3
Q ss_pred CeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhhhhhccCCCCCCCCCcccEEEEcce
Q 008614 429 LKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTN 508 (559)
Q Consensus 429 l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~ 508 (559)
+....+.||..+-.---...+++++++|.+++..+++ ...+.+|+.+= +... ....+++.+.
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~~---~~~l~~Gd~~~-------ip~~--------~~H~~~~~~~ 97 (116)
T 2pfw_A 36 AVKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNVDGV---IKVLTAGDSFF-------VPPH--------VDHGAVCPTG 97 (116)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEEECEEEEETTE---EEEECTTCEEE-------ECTT--------CCEEEEESSC
T ss_pred EEEEEECCCCcCCcEECCcceEEEEEeeEEEEEECCE---EEEeCCCCEEE-------ECcC--------CceeeEeCCC
Confidence 3445577887653222235689999999999776543 46899998852 1221 3455777777
Q ss_pred EEEEEE
Q 008614 509 VEGFTL 514 (559)
Q Consensus 509 ~~l~~L 514 (559)
++++.+
T Consensus 98 ~~~l~v 103 (116)
T 2pfw_A 98 GILIDT 103 (116)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 877766
No 86
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=53.95 E-value=28 Score=27.33 Aligned_cols=47 Identities=11% Similarity=0.130 Sum_probs=33.8
Q ss_pred CeeEEeCCCCEEEcc--CCc-cceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008614 429 LKPVFFSERTTIISE--GES-IHEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 478 (559)
Q Consensus 429 l~~~~~~~ge~I~~~--Gd~-~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~f 478 (559)
+....+.||..+-.. --. ..++++|++|.+++..+++ ...+++|+.+
T Consensus 23 ~~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~~~~---~~~l~~Gd~~ 72 (113)
T 2gu9_A 23 AAEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIVDGH---TQALQAGSLI 72 (113)
T ss_dssp EEEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEETTE---EEEECTTEEE
T ss_pred EEEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEECCE---EEEeCCCCEE
Confidence 344567888876543 223 5789999999999876553 3688999875
No 87
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=52.64 E-value=45 Score=26.42 Aligned_cols=46 Identities=13% Similarity=0.058 Sum_probs=33.6
Q ss_pred CeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008614 429 LKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 478 (559)
Q Consensus 429 l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~f 478 (559)
.-...+.||+.-.. -..+++++|++|++++..+++. ...+++||.+
T Consensus 33 ~~~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i~~g~--~~~l~~GD~i 78 (101)
T 1o5u_A 33 WPIWEKEVSEFDWY--YDTNETCYILEGKVEVTTEDGK--KYVIEKGDLV 78 (101)
T ss_dssp SCEEEECSEEEEEE--CSSCEEEEEEEEEEEEEETTCC--EEEEETTCEE
T ss_pred EEEEEeCCCccccc--CCceEEEEEEeCEEEEEECCCC--EEEECCCCEE
Confidence 44556788876544 3367999999999998776342 4689999986
No 88
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=51.96 E-value=33 Score=26.32 Aligned_cols=46 Identities=11% Similarity=0.076 Sum_probs=32.4
Q ss_pred eeEEeCCCCEEEccC-CccceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008614 430 KPVFFSERTTIISEG-ESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 478 (559)
Q Consensus 430 ~~~~~~~ge~I~~~G-d~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~f 478 (559)
....+.||..+-.-- +..++++++++|.+.+..+++ ...+++|+.+
T Consensus 31 ~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~~~~---~~~l~~Gd~~ 77 (105)
T 1v70_A 31 DLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRVGEE---EALLAPGMAA 77 (105)
T ss_dssp EEEEECTTCEEEEECCSSCEEEEEEEESCEEEEETTE---EEEECTTCEE
T ss_pred EEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEECCE---EEEeCCCCEE
Confidence 445578888764322 223579999999999876543 4688999886
No 89
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=50.54 E-value=33 Score=27.86 Aligned_cols=47 Identities=15% Similarity=0.123 Sum_probs=34.0
Q ss_pred CeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008614 429 LKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 478 (559)
Q Consensus 429 l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~f 478 (559)
+....+.||..+-.---...++++|++|.+++..+++ ...+++|+.+
T Consensus 43 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~~---~~~l~~Gd~~ 89 (126)
T 4e2g_A 43 LNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTIGEE---TRVLRPGMAY 89 (126)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEECEEEEETTE---EEEECTTEEE
T ss_pred EEEEEECCCCcCCCccCCCceEEEEEEeEEEEEECCE---EEEeCCCCEE
Confidence 4445678888765433335789999999999877554 3689999875
No 90
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=49.90 E-value=16 Score=30.17 Aligned_cols=43 Identities=12% Similarity=0.068 Sum_probs=32.2
Q ss_pred eCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeee
Q 008614 434 FSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCG 479 (559)
Q Consensus 434 ~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fG 479 (559)
..||..-.... ..++.+.|++|++.+..++|. ...+++||.+-
T Consensus 49 ~tPG~~~~~~~-~~~E~~~iLeG~~~lt~ddG~--~~~l~aGD~~~ 91 (116)
T 3es4_A 49 AEPGIYNYAGR-DLEETFVVVEGEALYSQADAD--PVKIGPGSIVS 91 (116)
T ss_dssp ECSEEEEECCC-SEEEEEEEEECCEEEEETTCC--CEEECTTEEEE
T ss_pred cCCceeECeeC-CCcEEEEEEEeEEEEEeCCCe--EEEECCCCEEE
Confidence 45665555443 345999999999999887774 57999999874
No 91
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=48.91 E-value=16 Score=28.39 Aligned_cols=49 Identities=6% Similarity=-0.107 Sum_probs=32.8
Q ss_pred eeEEeCCCCEEE-ccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeee
Q 008614 430 KPVFFSERTTII-SEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCG 479 (559)
Q Consensus 430 ~~~~~~~ge~I~-~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fG 479 (559)
....+.||...- ..-+..+++++|++|.+++...++. ....+++|+.+=
T Consensus 21 ~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~g~-~~~~l~~Gd~~~ 70 (97)
T 2fqp_A 21 TEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLETPEGS-VTSQLTRGVSYT 70 (97)
T ss_dssp EEEEECTTCBCCSEECCSCEEEEESSCEEEEEEETTEE-EEEEECTTCCEE
T ss_pred EEEEECCCCCCCCEECCCCcEEEEEeecEEEEEeCCCC-EEEEEcCCCEEE
Confidence 345577887642 2222224699999999998876652 246899998863
No 92
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=47.75 E-value=16 Score=30.39 Aligned_cols=43 Identities=9% Similarity=0.082 Sum_probs=31.0
Q ss_pred eCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeee
Q 008614 434 FSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCG 479 (559)
Q Consensus 434 ~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fG 479 (559)
..||..-....+ .+++++|++|++.+..++|. ...+++||.+-
T Consensus 56 ~~pG~~~~~~~~-~~E~~~Vl~G~~~l~~~~g~--~~~l~~GD~~~ 98 (123)
T 3bcw_A 56 STSGSFQSNTTG-YIEYCHIIEGEARLVDPDGT--VHAVKAGDAFI 98 (123)
T ss_dssp EEEEEEECCCTT-EEEEEEEEEEEEEEECTTCC--EEEEETTCEEE
T ss_pred ECCCceeeEcCC-CcEEEEEEEEEEEEEECCCe--EEEECCCCEEE
Confidence 456665544333 38999999999998875553 46899999864
No 93
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=47.51 E-value=29 Score=28.13 Aligned_cols=48 Identities=10% Similarity=0.099 Sum_probs=33.0
Q ss_pred CeeEEeCCCCEEEccCCc-cceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008614 429 LKPVFFSERTTIISEGES-IHEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 478 (559)
Q Consensus 429 l~~~~~~~ge~I~~~Gd~-~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~f 478 (559)
+....+.||..+-.---. ..++++|++|++++...++. ...+++|+.+
T Consensus 41 ~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~~~--~~~l~~Gd~~ 89 (125)
T 3h8u_A 41 VVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQGNGI--VTHLKAGDIA 89 (125)
T ss_dssp EEEEEECTTCEECCC-CTTCEEEEEEEECEEEEECSTTC--EEEEETTEEE
T ss_pred EEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEECCCe--EEEeCCCCEE
Confidence 444567888876543333 36899999999998763342 4688999875
No 94
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=45.67 E-value=26 Score=30.97 Aligned_cols=33 Identities=12% Similarity=0.221 Sum_probs=25.1
Q ss_pred ccceEEEEEEeEEEEEE-cCceEEEEEecCCCee
Q 008614 446 SIHEMLFVLEGQISIYS-KSKLIGLKRQEDGNYC 478 (559)
Q Consensus 446 ~~~~~yfI~~G~v~v~~-~~~~~~~~~l~~G~~f 478 (559)
..++++++++|.+.+.. ++|......+++|++|
T Consensus 54 ~~dE~FyvlkG~m~i~v~d~g~~~~v~l~eGE~f 87 (174)
T 1yfu_A 54 PLEEFFYQLRGNAYLNLWVDGRRERADLKEGDIF 87 (174)
T ss_dssp SSCEEEEEEESCEEEEEEETTEEEEEEECTTCEE
T ss_pred CCceEEEEEeeEEEEEEEcCCceeeEEECCCCEE
Confidence 35689999999999654 3353456799999987
No 95
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=45.38 E-value=26 Score=38.91 Aligned_cols=54 Identities=9% Similarity=0.121 Sum_probs=42.8
Q ss_pred HHHHHHHHHhHhhcccccCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008614 285 KLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETT 339 (559)
Q Consensus 285 ~Yl~slYwa~~T~tTvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~~~ 339 (559)
....++++++.+++..| ++..|.+...+++.+++++++.++.+.-.+++++...
T Consensus 563 ~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt 616 (823)
T 3kg2_A 563 GIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLT 616 (823)
T ss_dssp HHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35578999999999888 5889999999999999999999999999999986654
No 96
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=42.04 E-value=89 Score=28.57 Aligned_cols=69 Identities=13% Similarity=0.123 Sum_probs=47.6
Q ss_pred cCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhhhhhccCCCCCCCCCcccEEEE-c
Q 008614 428 CLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIA-H 506 (559)
Q Consensus 428 ~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A-~ 506 (559)
.+....+.||+.+-..--..++++++++|++++..+++ ...+++|+.+= +... ....+++ .
T Consensus 154 ~~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~g~---~~~l~~Gd~i~-------ip~~--------~~H~~~~~~ 215 (227)
T 3rns_A 154 VMTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYVDGK---PFIVKKGESAV-------LPAN--------IPHAVEAET 215 (227)
T ss_dssp EEEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEETTE---EEEEETTEEEE-------ECTT--------SCEEEECCS
T ss_pred EEEEEEECCCCccCCEECCCcEEEEEEeEEEEEEECCE---EEEECCCCEEE-------ECCC--------CcEEEEeCC
Confidence 34556789999876544446789999999999877554 46899998852 1211 3456777 7
Q ss_pred ceEEEEEE
Q 008614 507 TNVEGFTL 514 (559)
Q Consensus 507 ~~~~l~~L 514 (559)
+.++++..
T Consensus 216 ~~~~~ll~ 223 (227)
T 3rns_A 216 ENFKMLLI 223 (227)
T ss_dssp SCEEEEEE
T ss_pred CCEEEEEE
Confidence 77776643
No 97
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=41.62 E-value=61 Score=24.75 Aligned_cols=52 Identities=13% Similarity=0.210 Sum_probs=35.9
Q ss_pred cceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeH
Q 008614 447 IHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKT 516 (559)
Q Consensus 447 ~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~ 516 (559)
..+++++.+|.+.+..+++ ...+++|+.+= +.+. ......+.++|.++.++.
T Consensus 50 ~~e~~~v~~G~~~~~~~~~---~~~l~~Gd~~~-------ip~~--------~~H~~~~~~~~~~l~i~~ 101 (102)
T 3d82_A 50 TDEVFIVMEGTLQIAFRDQ---NITLQAGEMYV-------IPKG--------VEHKPMAKEECKIMIIEP 101 (102)
T ss_dssp CCEEEEEEESEEEEECSSC---EEEEETTEEEE-------ECTT--------CCBEEEEEEEEEEEEEEE
T ss_pred CcEEEEEEeCEEEEEECCE---EEEEcCCCEEE-------ECCC--------CeEeeEcCCCCEEEEEEc
Confidence 3789999999999776554 35789998752 1222 344566667888887753
No 98
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=39.81 E-value=26 Score=31.00 Aligned_cols=59 Identities=15% Similarity=0.127 Sum_probs=38.1
Q ss_pred HHHHHHHhcCee----EEeCCCCEEEcc-CC----------ccceEEEEEEeEEEEEE-cCc----eEEEEEecCCCee
Q 008614 420 YSLDHLCGCLKP----VFFSERTTIISE-GE----------SIHEMLFVLEGQISIYS-KSK----LIGLKRQEDGNYC 478 (559)
Q Consensus 420 ~~l~~l~~~l~~----~~~~~ge~I~~~-Gd----------~~~~~yfI~~G~v~v~~-~~~----~~~~~~l~~G~~f 478 (559)
+-+++....++| +....+++++.. |. ..++++++++|.+.+.. ++| ......+++|++|
T Consensus 12 ~wl~e~~~~~~PPV~Nk~v~~~~~~V~~vgGPn~r~D~H~~~~eE~Fy~lkG~m~l~v~d~g~~~~~~~dv~i~eGdmf 90 (176)
T 1zvf_A 12 KWLKENEGLLKPPVNNYCLHKGGFTVMIVGGPNERTDYHINPTPEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSY 90 (176)
T ss_dssp HHHHHHGGGGSSSSCEEEEECSSEEEEEECSSBCCSCEEECSSCEEEEEEESCEEEEEEECSSSSCEEEEEEECTTEEE
T ss_pred HHHHHhHhhcCCCcCCEEEecCCEEEEEEcCCCcCCcCcCCCCceEEEEEeCEEEEEEEcCCCcccceeeEEECCCCEE
Confidence 445566666776 444336665532 22 34589999999999644 324 3445799999987
No 99
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=38.63 E-value=52 Score=28.66 Aligned_cols=47 Identities=6% Similarity=0.049 Sum_probs=32.5
Q ss_pred CeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008614 429 LKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 478 (559)
Q Consensus 429 l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~f 478 (559)
+....+.||..+-.---...++++|++|.+.+..+++ ...+++|+++
T Consensus 58 ~~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i~~~---~~~l~~Gd~i 104 (167)
T 3ibm_A 58 TRYFEVEPGGYTTLERHEHTHVVMVVRGHAEVVLDDR---VEPLTPLDCV 104 (167)
T ss_dssp EEEEEECTTCBCCCBBCSSCEEEEEEESEEEEEETTE---EEEECTTCEE
T ss_pred EEEEEECCCCCCCCccCCCcEEEEEEeCEEEEEECCE---EEEECCCCEE
Confidence 3344567776553322336789999999999876554 4688999886
No 100
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=37.20 E-value=53 Score=28.94 Aligned_cols=50 Identities=14% Similarity=0.158 Sum_probs=34.6
Q ss_pred CeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCceEEEEEecCCCeee
Q 008614 429 LKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSKLIGLKRQEDGNYCG 479 (559)
Q Consensus 429 l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~--~~~~~~~~~l~~G~~fG 479 (559)
+....+.||.....--..++++++|++|++++.- .++. ....+++||.+=
T Consensus 43 ~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~-~~~~l~~GDv~~ 94 (178)
T 1dgw_A 43 VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGR-DTYKLDQGDAIK 94 (178)
T ss_dssp EEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEE-EEEEEETTEEEE
T ss_pred EEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCCc-EEEEECCCCEEE
Confidence 4556688887765443345799999999988533 3333 356899999863
No 101
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=37.09 E-value=38 Score=27.20 Aligned_cols=33 Identities=15% Similarity=0.285 Sum_probs=24.7
Q ss_pred CccceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008614 445 ESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 478 (559)
Q Consensus 445 d~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~f 478 (559)
...+++++|++|.+++..+++. ....+++||.+
T Consensus 51 ~~~~E~~~Vl~G~~~l~~~~~~-~~~~l~~Gd~i 83 (112)
T 2opk_A 51 SPQDEWVMVVSGSAGIECEGDT-APRVMRPGDWL 83 (112)
T ss_dssp CSSEEEEEEEESCEEEEETTCS-SCEEECTTEEE
T ss_pred CCccEEEEEEeCeEEEEECCEE-EEEEECCCCEE
Confidence 3456899999999998775553 01589999885
No 102
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=36.76 E-value=38 Score=29.38 Aligned_cols=47 Identities=13% Similarity=0.123 Sum_probs=32.5
Q ss_pred CeeEEeCCCCEEE--ccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008614 429 LKPVFFSERTTII--SEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 478 (559)
Q Consensus 429 l~~~~~~~ge~I~--~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~f 478 (559)
+....+.||.... ...+..+++++|++|++++...++ ...+++|+.+
T Consensus 45 ~~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~~~~---~~~l~~GD~i 93 (163)
T 3i7d_A 45 VNLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVDDQG---EHPMVPGDCA 93 (163)
T ss_dssp EEEEEECTTCBSSSSEEESSCCEEEEEEESCEEEEETTE---EEEECTTCEE
T ss_pred EEEEEECCCCcCCCCccCCCCcEEEEEEECEEEEEECCE---EEEeCCCCEE
Confidence 3445577887542 222233699999999999877554 4689999885
No 103
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=36.35 E-value=57 Score=26.94 Aligned_cols=46 Identities=13% Similarity=0.205 Sum_probs=31.9
Q ss_pred eeEEeCCCCEEEccCCc-cceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008614 430 KPVFFSERTTIISEGES-IHEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 478 (559)
Q Consensus 430 ~~~~~~~ge~I~~~Gd~-~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~f 478 (559)
....+.||..+-.---. ..++++|++|.+++..++. ...+++|+.+
T Consensus 60 ~~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~---~~~l~~Gd~i 106 (133)
T 1o4t_A 60 ARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHDNGK---DVPIKAGDVC 106 (133)
T ss_dssp EEEEECTTCEEEEEECCSEEEEEEEEESEEEEEETTE---EEEEETTEEE
T ss_pred EEEEECCCCccCceECCCccEEEEEEeCEEEEEECCE---EEEeCCCcEE
Confidence 34567888766422122 3689999999999876543 4688999885
No 104
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=36.19 E-value=43 Score=28.01 Aligned_cols=43 Identities=14% Similarity=0.162 Sum_probs=30.2
Q ss_pred EEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeee
Q 008614 432 VFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCG 479 (559)
Q Consensus 432 ~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fG 479 (559)
..+.||..-... ..+++++|++|++++..++. ...+++||.+-
T Consensus 62 ~~~~pG~~~~h~--~~~E~~~VLeG~~~l~~~g~---~~~l~~GD~i~ 104 (133)
T 2pyt_A 62 MQWDNAFFPWTL--NYDEIDMVLEGELHVRHEGE---TMIAKAGDVMF 104 (133)
T ss_dssp EEEEEEEEEEEC--SSEEEEEEEEEEEEEEETTE---EEEEETTCEEE
T ss_pred EEECCCCccccC--CCCEEEEEEECEEEEEECCE---EEEECCCcEEE
Confidence 346677432222 36799999999999877643 35899999864
No 105
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=36.06 E-value=62 Score=26.15 Aligned_cols=46 Identities=13% Similarity=0.129 Sum_probs=30.9
Q ss_pred eeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008614 430 KPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 478 (559)
Q Consensus 430 ~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~f 478 (559)
....+.||...-.---...+++++.+|++++..+++ ...+++|+.+
T Consensus 37 ~~~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i~~~---~~~l~~Gd~~ 82 (128)
T 4i4a_A 37 AWCIVRPETKSFRHSHNEYELFIVIQGNAIIRINDE---DFPVTKGDLI 82 (128)
T ss_dssp EEEEECTTEECCCBCCSSEEEEEEEESEEEEEETTE---EEEEETTCEE
T ss_pred EEEEECCCCccCCEecCCeEEEEEEeCEEEEEECCE---EEEECCCcEE
Confidence 334566776433222235689999999999877554 4688999885
No 106
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=35.27 E-value=38 Score=29.78 Aligned_cols=31 Identities=10% Similarity=0.054 Sum_probs=24.6
Q ss_pred ccceEEEEEEeEEEEEEcCceEEEEEecCCCeee
Q 008614 446 SIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCG 479 (559)
Q Consensus 446 ~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fG 479 (559)
.+++++||++|.+++...+. ...+++|+.+=
T Consensus 109 ~gEE~~yVLeG~v~vtl~g~---~~~L~~Gds~~ 139 (166)
T 2vpv_A 109 RTYITFHVIQGIVEVTVCKN---KFLSVKGSTFQ 139 (166)
T ss_dssp SEEEEEEEEESEEEEEETTE---EEEEETTCEEE
T ss_pred CceEEEEEEEeEEEEEECCE---EEEEcCCCEEE
Confidence 45789999999999877553 45899999863
No 107
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=35.26 E-value=40 Score=26.46 Aligned_cols=69 Identities=9% Similarity=-0.004 Sum_probs=41.6
Q ss_pred eCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhhhhhccCCCCCCCCCcccEEEEcceEEEEE
Q 008614 434 FSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFT 513 (559)
Q Consensus 434 ~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~ 513 (559)
..||+......+...++++|++|.+++..+++. ...+++|+.+= +... .....++.+.+.++.
T Consensus 35 ~~~g~~~~H~H~~~~E~~~Vl~G~~~~~~~~~~--~~~l~~Gd~~~-------ip~~--------~~H~~~~~~~~~~l~ 97 (107)
T 2i45_A 35 KLLGDYGWHTHGYSDKVLFAVEGDMAVDFADGG--SMTIREGEMAV-------VPKS--------VSHRPRSENGCSLVL 97 (107)
T ss_dssp EEEEECCCBCC--CCEEEEESSSCEEEEETTSC--EEEECTTEEEE-------ECTT--------CCEEEEEEEEEEEEE
T ss_pred ECCCCCcceeCCCCCEEEEEEeCEEEEEECCCc--EEEECCCCEEE-------ECCC--------CcEeeEeCCCeEEEE
Confidence 345553333333347999999999998776622 36899998862 1221 234455557788887
Q ss_pred EeHHHH
Q 008614 514 LKTDEL 519 (559)
Q Consensus 514 L~~~~f 519 (559)
++....
T Consensus 98 i~~~~~ 103 (107)
T 2i45_A 98 IELSDP 103 (107)
T ss_dssp EECC--
T ss_pred EECCCc
Confidence 775543
No 108
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=34.44 E-value=55 Score=30.06 Aligned_cols=32 Identities=16% Similarity=0.050 Sum_probs=24.9
Q ss_pred CccceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008614 445 ESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 478 (559)
Q Consensus 445 d~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~f 478 (559)
-..+++|+|++|.+++..+++. ...+++|+.+
T Consensus 150 Hp~EEiy~VLsG~~e~~v~~g~--~~~l~pGd~v 181 (217)
T 4b29_A 150 HLPEELYSVVSGRALFHLRNAP--DLMLEPGQTR 181 (217)
T ss_dssp CSSEEEEEEEEECEEEEETTSC--CEEECTTCEE
T ss_pred CCCceEEEEEeCCEEEEECCCC--EEecCCCCEE
Confidence 3467899999999998766442 4689998875
No 109
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=34.38 E-value=40 Score=28.63 Aligned_cols=60 Identities=15% Similarity=0.137 Sum_probs=38.9
Q ss_pred cCCccceEEEEEEeEEEEEEcCc-----eEEEEEecCCCeeehhhhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeHH
Q 008614 443 EGESIHEMLFVLEGQISIYSKSK-----LIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTD 517 (559)
Q Consensus 443 ~Gd~~~~~yfI~~G~v~v~~~~~-----~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~ 517 (559)
.-+..|++|+|++|++.+..+++ ......+++|+++-- ++ + -..+-+|.+.|+++.+...
T Consensus 46 ~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~yvV--------Pk---G----veH~p~a~~e~~vLLiEp~ 110 (140)
T 3d0j_A 46 IHHSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYNV--------PA---E----CWFYSITQKDTKMMYVQDS 110 (140)
T ss_dssp EESSCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCEEE--------CT---T----CEEEEEECTTCEEEEEEES
T ss_pred cCCCCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEEEe--------CC---C----ccCcccCCCceEEEEEEeC
Confidence 34557899999999999654321 123468899888631 11 1 2445677788888877655
No 110
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=34.34 E-value=60 Score=30.24 Aligned_cols=50 Identities=14% Similarity=0.086 Sum_probs=37.1
Q ss_pred hcCeeEEeCCCCEEEc-cCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeee
Q 008614 427 GCLKPVFFSERTTIIS-EGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCG 479 (559)
Q Consensus 427 ~~l~~~~~~~ge~I~~-~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fG 479 (559)
..+....+.||..+-. +--..++.++|++|+..+..++. ...+++||++-
T Consensus 165 ~~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~~~~---~~~l~~GD~~~ 215 (246)
T 1sfn_A 165 FMVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKLEEN---YYPVTAGDIIW 215 (246)
T ss_dssp EEEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEETTE---EEEEETTCEEE
T ss_pred eEEEEEEECCCCccCcccCCCceEEEEEEECEEEEEECCE---EEEcCCCCEEE
Confidence 3456667899988764 33445689999999999876543 45999999863
No 111
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=34.23 E-value=42 Score=28.77 Aligned_cols=47 Identities=11% Similarity=0.166 Sum_probs=32.5
Q ss_pred CeeEEeCCCCE-E-EccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008614 429 LKPVFFSERTT-I-ISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 478 (559)
Q Consensus 429 l~~~~~~~ge~-I-~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~f 478 (559)
+....+.||.. . ...-...+++++|++|++++..+++ ...+++||++
T Consensus 48 ~~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~~~~---~~~l~~Gd~i 96 (162)
T 3l2h_A 48 IHLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTMEND---QYPIAPGDFV 96 (162)
T ss_dssp EEEEEECTTCBSSSSBEESSCCEEEEEEESCEEEEETTE---EEEECTTCEE
T ss_pred EEEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEECCE---EEEeCCCCEE
Confidence 34456788874 2 1122245789999999999876554 3689999986
No 112
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=33.98 E-value=43 Score=29.59 Aligned_cols=48 Identities=15% Similarity=0.111 Sum_probs=32.5
Q ss_pred CeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008614 429 LKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 478 (559)
Q Consensus 429 l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~f 478 (559)
+....+.||...-.---...+..+|++|++++...+++ ...+++||.+
T Consensus 81 ~~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~ld~ge--~~~L~~GDsi 128 (172)
T 3es1_A 81 IRVVDMLPGKESPMHRTNSIDYGIVLEGEIELELDDGA--KRTVRQGGII 128 (172)
T ss_dssp EEEEEECTTCBCCCBCCSEEEEEEEEESCEEEECGGGC--EEEECTTCEE
T ss_pred EEEEEECCCCCCCCeecCceEEEEEEeCEEEEEECCCe--EEEECCCCEE
Confidence 44455777764332222345788999999998765443 3689999997
No 113
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=33.85 E-value=46 Score=28.68 Aligned_cols=44 Identities=9% Similarity=0.062 Sum_probs=29.6
Q ss_pred EEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008614 432 VFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 478 (559)
Q Consensus 432 ~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~f 478 (559)
..+.||...-.---...++++|++|++++..+++ ...+++|+++
T Consensus 49 ~~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v~g~---~~~l~~Gd~i 92 (156)
T 3kgz_A 49 FEVDEGGYSTLERHAHVHAVMIHRGHGQCLVGET---ISDVAQGDLV 92 (156)
T ss_dssp EEEEEEEECCCBBCSSCEEEEEEEEEEEEEETTE---EEEEETTCEE
T ss_pred EEECCCCccCceeCCCcEEEEEEeCEEEEEECCE---EEEeCCCCEE
Confidence 3455665543222234679999999999876554 4688999875
No 114
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=33.37 E-value=83 Score=26.50 Aligned_cols=47 Identities=15% Similarity=0.127 Sum_probs=31.9
Q ss_pred eeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008614 430 KPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 478 (559)
Q Consensus 430 ~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~f 478 (559)
....+.||..+-.---...++++|++|.+.+..+++. ...+.+|+.+
T Consensus 51 ~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~--~~~l~~Gd~i 97 (147)
T 2f4p_A 51 YDVVFEPGARTHWHSHPGGQILIVTRGKGFYQERGKP--ARILKKGDVV 97 (147)
T ss_dssp EEEEECTTCEECSEECTTCEEEEEEEEEEEEEETTSC--CEEEETTCEE
T ss_pred EEEEECCCCccCceECCCceEEEEEeCEEEEEECCEE--EEEECCCCEE
Confidence 3455677776532222346899999999998775542 2578999886
No 115
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=32.88 E-value=44 Score=29.21 Aligned_cols=44 Identities=7% Similarity=-0.034 Sum_probs=29.8
Q ss_pred EEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008614 432 VFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 478 (559)
Q Consensus 432 ~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~f 478 (559)
..+.||..+-.---...++++|++|++++..+++ ...+++|+.+
T Consensus 58 ~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v~g~---~~~l~~GD~i 101 (166)
T 3jzv_A 58 FEVGPGGHSTLERHQHAHGVMILKGRGHAMVGRA---VSAVAPYDLV 101 (166)
T ss_dssp EEEEEEEECCCBBCSSCEEEEEEEECEEEEETTE---EEEECTTCEE
T ss_pred EEECCCCccCceeCCCcEEEEEEeCEEEEEECCE---EEEeCCCCEE
Confidence 3456665543222234679999999999876554 4689999876
No 116
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=32.19 E-value=64 Score=26.06 Aligned_cols=46 Identities=11% Similarity=0.096 Sum_probs=29.9
Q ss_pred eeEEeCCCCEEE--ccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008614 430 KPVFFSERTTII--SEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 478 (559)
Q Consensus 430 ~~~~~~~ge~I~--~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~f 478 (559)
....+.||..+- ..-+..+.+|++++|.+.+..++. ...+++|+.+
T Consensus 29 ~~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i~~~---~~~l~~Gd~i 76 (125)
T 3cew_A 29 SINHLPAGAGVPFVHSHKQNEEIYGILSGKGFITIDGE---KIELQAGDWL 76 (125)
T ss_dssp EEEEECTTCBCSSEEEESSEEEEEEEEEEEEEEEETTE---EEEEETTEEE
T ss_pred EEEEECCCCCCCCCccCCCceEEEEEEeCEEEEEECCE---EEEeCCCCEE
Confidence 344567776552 222223457779999999776553 3588998875
No 117
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=31.95 E-value=76 Score=30.20 Aligned_cols=49 Identities=22% Similarity=0.250 Sum_probs=37.8
Q ss_pred hcCeeEEeCCCCEEEc-cCCccceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008614 427 GCLKPVFFSERTTIIS-EGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 478 (559)
Q Consensus 427 ~~l~~~~~~~ge~I~~-~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~f 478 (559)
..+....+.||..|-. +-...++.++|++|+..+..++. ...+++||+.
T Consensus 191 ~~~~~~~l~pG~~i~~~~~h~~e~~~~il~G~~~~~~~~~---~~~v~~GD~~ 240 (278)
T 1sq4_A 191 MHVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRLNQD---WVEVEAGDFM 240 (278)
T ss_dssp EEEEEEEECSSSEESCCCCCSEEEEEEEEECEEEEEETTE---EEEEETTCEE
T ss_pred eEEEEEEECCCCCcCCCCCCCccEEEEEEeCEEEEEECCE---EEEeCCCCEE
Confidence 4567778999999985 44444588999999999876543 4699999986
No 118
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=31.58 E-value=93 Score=27.33 Aligned_cols=44 Identities=16% Similarity=0.324 Sum_probs=31.2
Q ss_pred EEeCCCCEEEc-c-CCccceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008614 432 VFFSERTTIIS-E-GESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 478 (559)
Q Consensus 432 ~~~~~ge~I~~-~-Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~f 478 (559)
..+.||...-. . .....++++|++|.+++..++. ...+++||.+
T Consensus 109 ~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~~~~---~~~l~~GD~i 154 (192)
T 1y9q_A 109 ITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFFDEQ---WHELQQGEHI 154 (192)
T ss_dssp EEECTTCEEEECCCSTTCEEEEEEEESCEEEEETTE---EEEECTTCEE
T ss_pred EEECCCCCccCCCCCCCCEEEEEEEEeEEEEEECCE---EEEeCCCCEE
Confidence 45678776542 1 1234689999999999876543 4689999986
No 119
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=31.42 E-value=58 Score=28.03 Aligned_cols=30 Identities=17% Similarity=0.315 Sum_probs=23.9
Q ss_pred ccceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008614 446 SIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 478 (559)
Q Consensus 446 ~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~f 478 (559)
..+++++|++|++++.. +|. ...+++||.+
T Consensus 83 ~~eE~~yVLeG~~~l~i-~g~--~~~l~~GD~i 112 (151)
T 4axo_A 83 NYDEIDYVIDGTLDIII-DGR--KVSASSGELI 112 (151)
T ss_dssp SSEEEEEEEEEEEEEEE-TTE--EEEEETTCEE
T ss_pred CCcEEEEEEEeEEEEEE-CCE--EEEEcCCCEE
Confidence 35689999999999876 443 4689999986
No 120
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=31.22 E-value=52 Score=26.84 Aligned_cols=44 Identities=18% Similarity=0.308 Sum_probs=29.5
Q ss_pred EEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008614 432 VFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 478 (559)
Q Consensus 432 ~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~f 478 (559)
..+.||...-.---...++++|++|.+++..+++ ...+++|+.+
T Consensus 53 ~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~~~---~~~l~~Gd~i 96 (126)
T 1vj2_A 53 FTVEPGGLIDRHSHPWEHEIFVLKGKLTVLKEQG---EETVEEGFYI 96 (126)
T ss_dssp EEEEEEEEEEEECCSSCEEEEEEESEEEEECSSC---EEEEETTEEE
T ss_pred EEECCCCcCCceeCCCcEEEEEEEeEEEEEECCE---EEEECCCCEE
Confidence 3456665543222235789999999999876554 3588898875
No 121
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=29.54 E-value=45 Score=33.74 Aligned_cols=47 Identities=6% Similarity=0.018 Sum_probs=34.8
Q ss_pred eeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008614 430 KPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 478 (559)
Q Consensus 430 ~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~f 478 (559)
....+.||+.+-.---...++|||++|+-.....+|. ...+++||++
T Consensus 126 ~~~~l~PG~~~~~HrH~~~ev~~IleG~G~~t~v~G~--~~~~~~GD~i 172 (394)
T 3bu7_A 126 GIQTMKAGERAGAHRHAASALRFIMEGSGAYTIVDGH--KVELGANDFV 172 (394)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEECSCEEEEETTE--EEEECTTCEE
T ss_pred EEEEECCCCCcCCccCCcceEEEEEEeeEEEEEECCE--EEEEcCCCEE
Confidence 6677899998865544556899999998765444553 4688999886
No 122
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=29.40 E-value=83 Score=28.51 Aligned_cols=17 Identities=18% Similarity=0.170 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHh
Q 008614 157 TFFVLQYLLRVIRTYFL 173 (559)
Q Consensus 157 ~~~~l~rl~Rl~R~~~l 173 (559)
..+|++|++|++|+.+.
T Consensus 100 r~lRllRllR~~r~~~~ 116 (223)
T 1orq_C 100 RLVRLLRFLRILLIISR 116 (223)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45777777777777663
No 123
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=28.32 E-value=1e+02 Score=28.60 Aligned_cols=43 Identities=12% Similarity=0.238 Sum_probs=32.5
Q ss_pred eEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008614 431 PVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 478 (559)
Q Consensus 431 ~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~f 478 (559)
...+.||...-..- .++.++|++|++++...+. ...+++||++
T Consensus 54 ~~~l~Pg~~~~~~~--~ee~~~Vl~G~~~~~~~~~---~~~l~~Gd~~ 96 (246)
T 1sfn_A 54 TAEMPAGAQATESV--YQRFAFVLSGEVDVAVGGE---TRTLREYDYV 96 (246)
T ss_dssp EEEECTTCEEECCS--SEEEEEEEEEEEEEECSSC---EEEECTTEEE
T ss_pred EEEECCCCcCCCCc--eeEEEEEEECEEEEEECCE---EEEECCCCEE
Confidence 34578887765442 7889999999999876554 3689999885
No 124
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=28.32 E-value=59 Score=25.87 Aligned_cols=45 Identities=9% Similarity=0.219 Sum_probs=28.9
Q ss_pred EEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008614 432 VFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 478 (559)
Q Consensus 432 ~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~f 478 (559)
..+.||...-.---...+++++++|.+.+..+++. ...+++|+.+
T Consensus 32 ~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~~~~--~~~l~~Gd~i 76 (117)
T 2b8m_A 32 IVLPRGEQMPKHYSNSYVHLIIIKGEMTLTLEDQE--PHNYKEGNIV 76 (117)
T ss_dssp EEEETTCBCCCEECSSCEEEEEEESEEEEEETTSC--CEEEETTCEE
T ss_pred EEECCCCcCCCEeCCCcEEEEEEeCEEEEEECCEE--EEEeCCCCEE
Confidence 34556655421112345799999999998775543 2378998875
No 125
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=27.84 E-value=63 Score=30.84 Aligned_cols=57 Identities=14% Similarity=0.131 Sum_probs=36.7
Q ss_pred CccceEEEEEEeEEEEEE-cCceEEEEEecCCCeeehhhhhhhhccCCCCCCCCCcccEEEEcceEEEEEEeH
Q 008614 445 ESIHEMLFVLEGQISIYS-KSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKT 516 (559)
Q Consensus 445 d~~~~~yfI~~G~v~v~~-~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~ 516 (559)
+..+++|++++|...+.- ++|...-..+++|++|= +.. + -..+-++...|..+.+.+
T Consensus 49 ~~~dE~FyqlkG~m~l~~~d~g~~~~V~i~eGemfl-------lP~-----g---v~HsP~r~~et~gLviE~ 106 (286)
T 2qnk_A 49 EEGEEVFYQLEGDMVLRVLEQGKHRDVVIRQGEIFL-------LPA-----R---VPHSPQRFANTVGLVVER 106 (286)
T ss_dssp CSSCEEEEEEESCEEEEEEETTEEEEEEECTTEEEE-------ECT-----T---CCEEEEECTTCEEEEEEE
T ss_pred CCCCeEEEEEeCeEEEEEEeCCceeeEEECCCeEEE-------eCC-----C---CCcCCcccCCeEEEEEee
Confidence 346799999999999543 43544567999998862 121 1 233344466677776664
No 126
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=27.21 E-value=73 Score=28.15 Aligned_cols=47 Identities=26% Similarity=0.171 Sum_probs=30.9
Q ss_pred EEeCCCCEEEc---cCCccceEEEEEEeEEEEEEcCc-eEEEEEecCCCee
Q 008614 432 VFFSERTTIIS---EGESIHEMLFVLEGQISIYSKSK-LIGLKRQEDGNYC 478 (559)
Q Consensus 432 ~~~~~ge~I~~---~Gd~~~~~yfI~~G~v~v~~~~~-~~~~~~l~~G~~f 478 (559)
..+.||...-. -.-.++++++|++|.+++...++ ......+++||.+
T Consensus 122 ~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~~~~~~~~~~l~~GD~~ 172 (198)
T 2bnm_A 122 VDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENPKEALLPTGASM 172 (198)
T ss_dssp EEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTSCEEEEECTTCEE
T ss_pred EEEcCCCCCcccccccCCCeEEEEEEeeeEEEEECCcCCcccEEECCCCEE
Confidence 34677765432 12234689999999999776551 1124689999986
No 127
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=26.09 E-value=1e+02 Score=28.41 Aligned_cols=46 Identities=7% Similarity=0.090 Sum_probs=33.5
Q ss_pred CeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCe
Q 008614 429 LKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNY 477 (559)
Q Consensus 429 l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~ 477 (559)
+....+.||..+-.---...++++|++|.+++..+++ ...+.+|+.
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~~~~~---~~~l~~Gd~ 81 (243)
T 3h7j_A 36 VLMSYVPPHTNVEPHQHKEVQIGMVVSGELMMTVGDV---TRKMTALES 81 (243)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEESEEEEEETTE---EEEEETTTC
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEEeEEEEEECCE---EEEECCCCE
Confidence 4445588888765443346789999999999877543 468999984
No 128
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=26.01 E-value=92 Score=31.08 Aligned_cols=81 Identities=14% Similarity=0.152 Sum_probs=58.6
Q ss_pred eeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhhhhhccCCCCCCCCCcccEEEEcceE
Q 008614 430 KPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNV 509 (559)
Q Consensus 430 ~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~ 509 (559)
....+.||+..-..-..+..+|.|.+|.-.+.-++. ....++||.|---.- ...+..+.++|
T Consensus 282 ~~~~L~pG~~t~~hRht~s~Vy~V~eG~G~~~I~~~---~~~w~~gD~fvvP~w---------------~~h~~~n~~~a 343 (368)
T 3nw4_A 282 EFHRLRAGTETATRNEVGSTVFQVFEGAGAVVMNGE---TTKLEKGDMFVVPSW---------------VPWSLQAETQF 343 (368)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEESCEEEEETTE---EEEECTTCEEEECTT---------------CCEEEEESSSE
T ss_pred heEEECCCCccCCeeccccEEEEEEeCcEEEEECCE---EEEecCCCEEEECCC---------------CcEEEEeCCCE
Confidence 345678888775555567789999999988665443 468999999742211 44567788999
Q ss_pred EEEEEeHHHHHHHHHhcHh
Q 008614 510 EGFTLKTDELKHGIALHRR 528 (559)
Q Consensus 510 ~l~~L~~~~f~~ll~~~P~ 528 (559)
.++.++-.-+.+-+.-|.+
T Consensus 344 ~Lf~~~D~Pl~~~LGl~r~ 362 (368)
T 3nw4_A 344 DLFRFSDAPIMEALSFMRT 362 (368)
T ss_dssp EEEEEESHHHHHHTTCCCE
T ss_pred EEEEEeCHHHHHHhCCcee
Confidence 9999998888876655543
No 129
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=25.55 E-value=65 Score=32.54 Aligned_cols=79 Identities=6% Similarity=-0.063 Sum_probs=52.8
Q ss_pred eeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhhhhhccCCCCCCCCCcccEEEE---c
Q 008614 430 KPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIA---H 506 (559)
Q Consensus 430 ~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A---~ 506 (559)
....+.||+..-.---..+++|+|++|+..+..++. ...+++||+|=.-.- ....... .
T Consensus 297 ~~~~l~PG~~~~~HrH~~~~v~~VleG~G~~~V~ge---~~~~~~GD~~~iP~g---------------~~H~~~N~g~~ 358 (394)
T 3bu7_A 297 SMQMLRPGEHTKAHRHTGNVIYNVAKGQGYSIVGGK---RFDWSEHDIFCVPAW---------------TWHEHCNTQER 358 (394)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEECCEEEEETTE---EEEECTTCEEEECTT---------------CCEEEEECCSS
T ss_pred EEEEECCCCcCCCcccCCcEEEEEEeCeEEEEECCE---EEEEeCCCEEEECCC---------------CeEEeEeCCCC
Confidence 556788998876654556789999999987555433 469999999742111 2233333 3
Q ss_pred ceEEEEEEeHHHHHHHHHhc
Q 008614 507 TNVEGFTLKTDELKHGIALH 526 (559)
Q Consensus 507 ~~~~l~~L~~~~f~~ll~~~ 526 (559)
+.+.++.++-..+.+-+.-+
T Consensus 359 e~~~ll~i~D~Pl~~~Lgl~ 378 (394)
T 3bu7_A 359 DDACLFSFNDFPVMEKLGFW 378 (394)
T ss_dssp CCEEEEEEESHHHHHHTTCC
T ss_pred CCeEEEEeeCHHHHHHhhhh
Confidence 57888888877777665544
No 130
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=25.50 E-value=65 Score=27.58 Aligned_cols=50 Identities=14% Similarity=-0.052 Sum_probs=31.4
Q ss_pred CeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcC------ceEEEEEecCCCee
Q 008614 429 LKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKS------KLIGLKRQEDGNYC 478 (559)
Q Consensus 429 l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~~------~~~~~~~l~~G~~f 478 (559)
+....+.||..+-.---...++++|++|.+.+...+ +......+++|+.+
T Consensus 43 ~~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~~~~~~~~~~~~l~~Gd~i 98 (163)
T 1lr5_A 43 VWLQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTF 98 (163)
T ss_dssp EEEEEECTTCBCCEEEESSCEEEEEEECCEEEEECCSSSSSCCSCEEEEECTTEEE
T ss_pred EEEEEECCCCcCCCeECCCCeEEEEEeCEEEEEECCccccccCccEEEEeCCCCEE
Confidence 334456777654211113457999999999977654 11124689999885
No 131
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=24.98 E-value=19 Score=28.38 Aligned_cols=50 Identities=8% Similarity=0.044 Sum_probs=33.8
Q ss_pred CeeEEeCCCCEEEccC-CccceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008614 429 LKPVFFSERTTIISEG-ESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 478 (559)
Q Consensus 429 l~~~~~~~ge~I~~~G-d~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~f 478 (559)
.+...+.||+.+-..- ....+.|+|.+|.+.+...++......+.+|+.+
T Consensus 19 V~r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~~d~~~~~~~l~~G~~~ 69 (98)
T 3lag_A 19 VTEWRLPPGSATGHHTHGMDYVVVPMADGEMTIVAPDGTRSLAQLKTGRSY 69 (98)
T ss_dssp EEEEEECTTEECCSEECCSCEEEEESSCBC-CEECTTSCEECCCBCTTCCE
T ss_pred EEEEEECCCCccCcEECCCcEEEEEEeccEEEEEeCCCceEEEEecCCcEE
Confidence 4556788998876543 3345688889999998776654444567888764
No 132
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=24.80 E-value=1.1e+02 Score=23.50 Aligned_cols=68 Identities=15% Similarity=0.135 Sum_probs=40.8
Q ss_pred eeEEeCCCCEEEccC-CccceE-EEEEEeEEEEEEcCceEEEEEecCCCeeehhhhhhhhccCCCCCCCCCcccEEEEcc
Q 008614 430 KPVFFSERTTIISEG-ESIHEM-LFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHT 507 (559)
Q Consensus 430 ~~~~~~~ge~I~~~G-d~~~~~-yfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~ 507 (559)
....+.||..+-.-- +...++ +++++|.+++..+++. ...+++|+.+= +... ....+++.+
T Consensus 36 ~~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~~~~~--~~~l~~Gd~~~-------ip~~--------~~H~~~~~~ 98 (110)
T 2q30_A 36 VSFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVGDGDA--VIPAPRGAVLV-------APIS--------TPHGVRAVT 98 (110)
T ss_dssp EEEEECTTCEEEEECCSSSCEEEEEEEESCEEEECGGGC--EEEECTTEEEE-------EETT--------SCEEEEESS
T ss_pred EEEEECCCCcCCcccCCCCccEEEEEEeCEEEEEeCCCE--EEEECCCCEEE-------eCCC--------CcEEEEEcC
Confidence 334567887764322 222466 8999999998765332 35899998752 1221 344566667
Q ss_pred eEEEEEE
Q 008614 508 NVEGFTL 514 (559)
Q Consensus 508 ~~~l~~L 514 (559)
+++++.+
T Consensus 99 ~~~~l~~ 105 (110)
T 2q30_A 99 DMKVLVT 105 (110)
T ss_dssp SEEEEEE
T ss_pred CcEEEEE
Confidence 7665543
No 133
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=24.00 E-value=78 Score=30.05 Aligned_cols=68 Identities=13% Similarity=0.157 Sum_probs=43.6
Q ss_pred eEEeCCCCEEEccCCccceEEEEEEeEEEEEEc-CceEEEEEecCCCeeehhhhhhhhccCCCCCCCCCcccEEEEcceE
Q 008614 431 PVFFSERTTIISEGESIHEMLFVLEGQISIYSK-SKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNV 509 (559)
Q Consensus 431 ~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~~-~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~ 509 (559)
...+.||..--.....+++..||++|++++..+ ++ ...+++|+++=- ... ...+++..+.+
T Consensus 74 lv~l~PGg~s~~~~h~~EEfiyVleG~l~l~l~~g~---~~~L~~Gds~y~-------p~~--------~~H~~~N~~~A 135 (266)
T 4e2q_A 74 LAKMKEMSSSGLPPQDIERLIFVVEGAVTLTNTSSS---SKKLTVDSYAYL-------PPN--------FHHSLDCVESA 135 (266)
T ss_dssp EEEECSSEECCCCCTTEEEEEEEEEECEEEEC--CC---CEEECTTEEEEE-------CTT--------CCCEEEESSCE
T ss_pred EEEECcCCcCCCCCCCCeEEEEEEEEEEEEEECCCc---EEEEcCCCEEEE-------CCC--------CCEEEEeCCCE
Confidence 445788876422234467899999999998765 43 358999988631 211 33445556778
Q ss_pred EEEEEeH
Q 008614 510 EGFTLKT 516 (559)
Q Consensus 510 ~l~~L~~ 516 (559)
+++.+.+
T Consensus 136 r~l~V~k 142 (266)
T 4e2q_A 136 TLVVFER 142 (266)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 8877753
No 134
>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}
Probab=23.66 E-value=70 Score=29.84 Aligned_cols=31 Identities=19% Similarity=0.312 Sum_probs=25.9
Q ss_pred cceEEEEEEeEEEEEEcCceEEEEEecCCCeee
Q 008614 447 IHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCG 479 (559)
Q Consensus 447 ~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~fG 479 (559)
.+++..|++|++.+..++|. ...+++||.+-
T Consensus 186 ~~E~~~ILeG~v~lt~~~G~--~~~~~aGD~~~ 216 (238)
T 3myx_A 186 IHELMNLIEGRVVLSLENGS--SLTVNTGDTVF 216 (238)
T ss_dssp SCEEEEEEECCEEEEETTSC--EEEECTTCEEE
T ss_pred CCEEEEEEEeEEEEEeCCCC--EEEECCCCEEE
Confidence 46899999999999887775 46899999874
No 135
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=23.57 E-value=1.2e+02 Score=28.67 Aligned_cols=47 Identities=15% Similarity=0.179 Sum_probs=33.9
Q ss_pred CeeEEeCCCCEEEc-cCCccceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008614 429 LKPVFFSERTTIIS-EGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 478 (559)
Q Consensus 429 l~~~~~~~ge~I~~-~Gd~~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~f 478 (559)
+....+.||..+-. .--..+++++|++|++++..+++ ...+++||.+
T Consensus 184 ~~~~~l~pg~~~~~~H~H~~~E~~yVl~G~~~~~i~~~---~~~l~~GD~i 231 (274)
T 1sef_A 184 MHILSFEPGASHAYIETHVQEHGAYLISGQGMYNLDNE---WYPVEKGDYI 231 (274)
T ss_dssp EEEEEECTTCBCSSCBCCSCCEEEEEEECEEEEEETTE---EEEEETTCEE
T ss_pred EEEEEECCCCccCcceeccCeEEEEEEeCEEEEEECCE---EEEECCCCEE
Confidence 44456788887633 22245789999999999876554 4689999986
No 136
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=22.82 E-value=1.3e+02 Score=25.06 Aligned_cols=48 Identities=13% Similarity=-0.096 Sum_probs=30.4
Q ss_pred eEEeCCCCEEEc-cCCccceEEEEEEeEEEEEEcCceE---EEEEecCCCee
Q 008614 431 PVFFSERTTIIS-EGESIHEMLFVLEGQISIYSKSKLI---GLKRQEDGNYC 478 (559)
Q Consensus 431 ~~~~~~ge~I~~-~Gd~~~~~yfI~~G~v~v~~~~~~~---~~~~l~~G~~f 478 (559)
...+.||..+-. .-...+++++|++|.+.+...++.. ....+.+|+.+
T Consensus 47 ~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~~~~~~~~~~l~~Gd~i 98 (148)
T 2oa2_A 47 LMSIQVGEDIGLEIHPHLDQFLRVEEGRGLVQMGHRQDNLHFQEEVFDDYAI 98 (148)
T ss_dssp EEEECTTCBCCCBCCTTCEEEEEEEESEEEEEEESBTTBCCEEEEEETTCEE
T ss_pred EEEECCCCccCceECCCCcEEEEEEeCEEEEEECCccccceeeEEECCCCEE
Confidence 345677765532 2223458999999999976644320 01588999874
No 137
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=22.16 E-value=47 Score=27.70 Aligned_cols=14 Identities=0% Similarity=0.033 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHH
Q 008614 25 IENKRYLLLNVIAM 38 (559)
Q Consensus 25 ~Wd~~~~~~~~~~~ 38 (559)
.+|.+++++.++++
T Consensus 7 ~f~~~i~~lIlls~ 20 (132)
T 1ors_C 7 LVELGVSYAALLSV 20 (132)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45555554444443
No 138
>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}
Probab=21.51 E-value=1.2e+02 Score=24.56 Aligned_cols=30 Identities=17% Similarity=0.183 Sum_probs=24.0
Q ss_pred cceEEEEEEeEEEEEEcCceEEEEEecCCCee
Q 008614 447 IHEMLFVLEGQISIYSKSKLIGLKRQEDGNYC 478 (559)
Q Consensus 447 ~~~~yfI~~G~v~v~~~~~~~~~~~l~~G~~f 478 (559)
..++++|++|.+.+..+++. ...+++|+.+
T Consensus 64 ~~E~~~vl~G~~~~~~~~~~--~~~l~~Gd~~ 93 (134)
T 2o8q_A 64 GFQLFYVLRGWVEFEYEDIG--AVMLEAGGSA 93 (134)
T ss_dssp SCEEEEEEESEEEEEETTTE--EEEEETTCEE
T ss_pred CcEEEEEEeCEEEEEECCcE--EEEecCCCEE
Confidence 37899999999998776632 4689999875
No 139
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=21.07 E-value=2.1e+02 Score=25.39 Aligned_cols=51 Identities=16% Similarity=0.087 Sum_probs=33.8
Q ss_pred CeeEEeCCCCEEEc-cCCccceEEEEEEeEEEEEE-cC----ceEEEEEecCCCeee
Q 008614 429 LKPVFFSERTTIIS-EGESIHEMLFVLEGQISIYS-KS----KLIGLKRQEDGNYCG 479 (559)
Q Consensus 429 l~~~~~~~ge~I~~-~Gd~~~~~yfI~~G~v~v~~-~~----~~~~~~~l~~G~~fG 479 (559)
+....+.||...-. .....+++++|++|++++.. .+ ++.....+++|+.+=
T Consensus 74 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~~~~l~~GD~~~ 130 (201)
T 1fi2_A 74 MNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFV 130 (201)
T ss_dssp EEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCEEEEEEETTCEEE
T ss_pred EEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeEEEEEECCCCEEE
Confidence 44566788876532 22335799999999999644 22 332256899999863
No 140
>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A {Antonospora locustae}
Probab=20.76 E-value=1.1e+02 Score=27.06 Aligned_cols=36 Identities=14% Similarity=0.113 Sum_probs=28.3
Q ss_pred cCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceE
Q 008614 409 GQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEM 450 (559)
Q Consensus 409 ~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~~ 450 (559)
-+.|.|++++....++++.. .+||+|+|+...++++
T Consensus 12 I~HP~F~n~s~~qAe~~L~~------~~G~~liRPSsk~~~l 47 (178)
T 2xp1_A 12 YKHPLFKNFNVTESENYLRS------STDDFLIRKGSRHGYC 47 (178)
T ss_dssp GGSTTEECCCHHHHHHHHHH------SSCCEEEEECSSTTEE
T ss_pred ccCCCcCCCCHHHHHHHHhc------CCCCEEEeecCCCCcE
Confidence 35799999998777766666 3699999998877654
No 141
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=20.41 E-value=1.1e+02 Score=31.17 Aligned_cols=52 Identities=13% Similarity=0.036 Sum_probs=37.4
Q ss_pred hcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE-cCceEEEEEecCCCee
Q 008614 427 GCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS-KSKLIGLKRQEDGNYC 478 (559)
Q Consensus 427 ~~l~~~~~~~ge~I~~~Gd~~~~~yfI~~G~v~v~~-~~~~~~~~~l~~G~~f 478 (559)
..+....+.||..+-.--..++++++|++|+..+.. .++......+++||++
T Consensus 61 ~s~~~~~l~PGg~~~pHh~~a~Ei~yVl~G~g~v~~v~~~~~~~~~l~~GDv~ 113 (434)
T 2ea7_A 61 YRVVEFKSKPNTLLLPHHADADFLLVVLNGTAVLTLVNPDSRDSYILEQGHAQ 113 (434)
T ss_dssp CEEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSCEEEEEEETTEEE
T ss_pred EEEEEEEecCCcCccCccCCCceEEEEEecEEEEEEEeCCCCEEEEeCCCCEE
Confidence 446677889998887665557799999999988543 2222246688998886
No 142
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=20.08 E-value=4e+02 Score=25.68 Aligned_cols=80 Identities=16% Similarity=0.009 Sum_probs=42.2
Q ss_pred hhhhhhhhhhc-ccccceeeeeeccCCCCcchHHHHHHHHHHHHHHHHHhHHHHHHhhhHHhhhhHHHHHHHHHHHHHHH
Q 008614 125 WMLFFIDGLAI-LPIPQVLVIFPIRDTGFSTAMTFFVLQYLLRVIRTYFLFTDAIEVSGVIADATWGIFAFYVLLYLQSG 203 (559)
Q Consensus 125 ~~~F~~Dlls~-lP~~~i~~~~~~~~~~~~~~~~~~~l~rl~Rl~R~~~l~~~~~~~~~~i~~~~~~~~~~~l~~~~l~~ 203 (559)
+.|.++|++++ +|+..+.. + +. ..++++|++|++|+.|..+.++.....+..+ ...+...++.++++.
T Consensus 72 ~~~~i~Dl~~i~~p~~~~~~----~---~~---~~~r~lr~~R~lrl~r~~~~~~~l~~~l~~~-~~~l~~~~~~~~~~~ 140 (355)
T 3beh_A 72 TPKIAIDVLAVLVPLAAFLL----D---GS---PDWSLYCAVWLLKPLRDSTFFPVLGRVLANE-ARNLIGVTTLFGVVL 140 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHS----C---CS---GGGGGGGGGGGSHHHHTCSSHHHHHHHHHHT-HHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHh----c---cc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 45999999999 69864321 1 11 1223334444444444333232222222211 123344455556679
Q ss_pred HHHHHHHHhhhh
Q 008614 204 HMFGALWYYYAI 215 (559)
Q Consensus 204 H~~aC~w~~i~~ 215 (559)
|+.||++|.+..
T Consensus 141 ~~~a~~~~~~e~ 152 (355)
T 3beh_A 141 FAVALAAYVIER 152 (355)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHhhc
Confidence 999999998863
Done!