Query 008615
Match_columns 559
No_of_seqs 483 out of 3063
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 07:41:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008615.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008615hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 1.2E-45 4.1E-50 376.4 41.5 443 94-558 5-479 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 1.5E-39 5E-44 327.9 24.4 396 101-542 28-434 (451)
3 3o7q_A L-fucose-proton symport 100.0 1.5E-37 5.2E-42 311.8 30.9 365 105-536 30-427 (438)
4 4aps_A DI-OR tripeptide H+ sym 100.0 3.3E-33 1.1E-37 284.5 28.1 399 138-548 49-478 (491)
5 2gfp_A EMRD, multidrug resista 100.0 3.4E-34 1.2E-38 281.1 10.2 354 106-526 5-361 (375)
6 2cfq_A Lactose permease; trans 100.0 1.3E-30 4.3E-35 258.9 4.1 360 138-549 38-407 (417)
7 2xut_A Proton/peptide symporte 100.0 5.2E-28 1.8E-32 248.2 21.3 401 140-552 51-513 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.5 4.9E-13 1.7E-17 133.9 17.3 145 138-283 283-433 (451)
9 3o7q_A L-fucose-proton symport 99.4 1.3E-12 4.4E-17 130.3 14.9 168 369-540 35-228 (438)
10 2gfp_A EMRD, multidrug resista 99.4 7.3E-13 2.5E-17 129.2 9.0 164 377-547 17-180 (375)
11 2cfq_A Lactose permease; trans 99.4 1.9E-12 6.6E-17 127.9 12.1 146 140-286 256-403 (417)
12 4aps_A DI-OR tripeptide H+ sym 99.4 1.3E-11 4.6E-16 124.9 17.6 157 378-541 31-196 (491)
13 2xut_A Proton/peptide symporte 99.3 5.7E-11 2E-15 121.3 18.5 157 378-540 30-197 (524)
14 4gc0_A D-xylose-proton symport 99.1 3.2E-10 1.1E-14 114.7 11.6 150 138-287 307-467 (491)
15 2g9p_A Antimicrobial peptide l 71.1 2.5 8.4E-05 20.6 1.6 15 162-176 2-16 (26)
16 3mkt_A Multi antimicrobial ext 54.4 1.5E+02 0.0051 28.2 22.4 34 214-247 142-175 (460)
17 2dw3_A Intrinsic membrane prot 28.0 1.2E+02 0.0042 20.4 4.7 31 519-549 31-61 (77)
18 4dve_A Biotin transporter BIOY 26.5 1.2E+02 0.004 25.3 5.7 25 149-173 99-123 (198)
19 3arc_T Photosystem II reaction 24.5 69 0.0024 17.5 2.5 12 277-288 17-28 (32)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=1.2e-45 Score=376.43 Aligned_cols=443 Identities=33% Similarity=0.578 Sum_probs=345.9
Q ss_pred chhhHHHHHHHHHHHHHhhhcccccccccccccccCCCCCC-ccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhch
Q 008615 94 FSWSSVILPFLFPALGGLLFGYDIGATSGATISLQSPELSG-TTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGR 172 (559)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Gr 172 (559)
++.+..+.+.++++++.+++|||.++++.+++.+..+.... +...+.+..+.|++.+++.+|..+|++++|+++||+||
T Consensus 5 ~~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GR 84 (491)
T 4gc0_A 5 YNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGR 84 (491)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCH
T ss_pred cChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44455666677788999999999999998888776431111 00024566788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH------------------hchhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhh
Q 008615 173 KRELIIAAVLYALGALTTA------------------YAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLI 234 (559)
Q Consensus 173 r~~~~~~~~~~~i~~~~~~------------------~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~ 234 (559)
|++++++.+++.+++++++ +++|+++++++|+++|+|.|...+....++.|+.|+++|++..
T Consensus 85 k~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~ 164 (491)
T 4gc0_A 85 RDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLV 164 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhH
Confidence 9999999999999999998 4789999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhhcccCCC-------CcchHHHhhhHHHHHHHHHHhhccCCchHHHHHhhccCCCchhhhHHH
Q 008615 235 SLKELFIVLGILLGYFVGSFQINAV-------GGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKEQ 307 (559)
Q Consensus 235 ~~~~~~~~~G~~~g~~l~~~l~~~~-------~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~ 307 (559)
++.+.+..+|.++++.++..+.... .+||+.+.+..+..++..+..+++||||+|+..| ++.++
T Consensus 165 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~---------~~~~~ 235 (491)
T 4gc0_A 165 SFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSR---------GKQEQ 235 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHT---------TCHHH
T ss_pred HhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHc---------CchhH
Confidence 9999999999999998877654321 2689999999999999888889999999999985 45566
Q ss_pred HHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHH
Q 008615 308 AISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPIL 387 (559)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (559)
+++.+++....+..+ .+..+. ++.....++.......++ .++..+......+.++.+.+.+.+|.+.+.
T Consensus 236 a~~~l~~~~~~~~~~----~~~~~~----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (491)
T 4gc0_A 236 AEGILRKIMGNTLAT----QAVQEI----KHSLDHGRKTGGRLLMFG---VGVIVIGVMLSIFQQFVGINVVLYYAPEVF 304 (491)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHH----HHHHHHHHHHTTHHHHSC---CTHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHhHHHhcCCchhH----HHHHHH----HHHHHhhhhhhhHHHHhc---ccHHHHHHHHHHHHHHhhhhHHHhcchHHH
Confidence 666655544321110 000000 000011111111112222 234555566667777888888999999999
Q ss_pred HHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHH
Q 008615 388 QSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGC 467 (559)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (559)
+..+... ..........++..+++.++++++.||+|||+.++.+.....++++.+...... ....+..+...+++..+
T Consensus 305 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~ 382 (491)
T 4gc0_A 305 KTLGAST-DIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT-QAPGIVALLSMLFYVAA 382 (491)
T ss_dssp HHSSCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHH
T ss_pred HhcCCCc-cchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhc-ccchHHHHHHHHHHHHH
Confidence 8888776 667777788889999999999999999999999999988888887777654432 23344455555566666
Q ss_pred hhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHH------hcCchhhHHHHHHHHHHHHHHHHhh
Q 008615 468 YQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKE------LLGAENIFLLFAAIAFLAVLFIVRT 541 (559)
Q Consensus 468 ~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~------~~g~~~~~~~~~~~~~~~~~~~~~~ 541 (559)
+..+..++.+.+.+|++|++.|++++|+.++++.+++++++.+.+.+.+ ..+....|++++++++++.++.+++
T Consensus 383 ~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~ 462 (491)
T 4gc0_A 383 FAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKF 462 (491)
T ss_dssp HHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhe
Confidence 7777788888999999999999999999999999999999988766543 3456678889999999999999999
Q ss_pred ccCCCCCCHHHHHhhhh
Q 008615 542 VPETKGLSLEEIESKIL 558 (559)
Q Consensus 542 ~~~~~~~~~~~~~~~~~ 558 (559)
+||||+|++||+|+-+|
T Consensus 463 ~PETkg~tLeei~~~f~ 479 (491)
T 4gc0_A 463 VPETKGKTLEELEALWE 479 (491)
T ss_dssp CCCCTTCCHHHHGGGTC
T ss_pred ecCCCCCCHHHHHHHhC
Confidence 99999999999987654
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=1.5e-39 Score=327.87 Aligned_cols=396 Identities=14% Similarity=0.075 Sum_probs=297.4
Q ss_pred HHHHHHHHHHhhhcccccccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHH
Q 008615 101 LPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAA 180 (559)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~ 180 (559)
..+...+++.+..+++...+.+.++.+..+ + .+..+.|++.+++.++..++++++|+++||+|||++++++.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~ 99 (451)
T 1pw4_A 28 QIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-------G-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGL 99 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHTTSS-------T-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------h-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHH
Confidence 344555566677777877888888887776 8 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh----chhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhccc
Q 008615 181 VLYALGALTTAY----APGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQI 256 (559)
Q Consensus 181 ~~~~i~~~~~~~----~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~ 256 (559)
++.+++.+++++ +++++.++++|+++|++.+...+...+++.|++|+++|++++++...+..+|.+++|.+++++.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 179 (451)
T 1pw4_A 100 ILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM 179 (451)
T ss_dssp HHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 9999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCCCc-chHHHhhhHHHHHHHHHHh-hccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHH
Q 008615 257 NAVGG-WRYMYGLSAPLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLV 334 (559)
Q Consensus 257 ~~~~~-wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (559)
+.. + ||+.|++.++++++..++. +++||+|+....++.++ .+.+. ..+.+
T Consensus 180 ~~~-g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--------------------~~~~~---- 231 (451)
T 1pw4_A 180 AWF-NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEE---YKNDY--------------------PDDYN---- 231 (451)
T ss_dssp HHT-CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTT---TCCC------------------------------
T ss_pred HHh-ccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhh---hcccc--------------------cccch----
Confidence 766 7 9999999998887765544 66888775311100000 00000 00000
Q ss_pred HhhhccccccccccchhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhHHHHHHHHHHHHHHHH
Q 008615 335 SLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMT 413 (559)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 413 (559)
.+++.+...++...+++++++.++...+..++..+. ...+..+.|.++++ .+.+. .+.+.......++.+++.
T Consensus 232 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~ 305 (451)
T 1pw4_A 232 -EKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLL----RYGILDWSPTYLKEVKHFAL-DKSSWAYFLYEYAGIPGT 305 (451)
T ss_dssp --------CCTHHHHHHTSSCHHHHHHHHHHHHHHHH----HHHHHHHHHHHBTTBSCCCH-HHHHHHHHHHHHHHHHHH
T ss_pred -hhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHH
Confidence 000000011111135667777666555544444333 33567788888887 67766 788999999999999999
Q ss_pred HHHHHHhhhc--CCcchhhhhHHHHH-HHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchh
Q 008615 414 WIAVAKVDDL--GRRPLLIGGVCGIA-LSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRG 490 (559)
Q Consensus 414 ~~~g~l~d~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 490 (559)
++.+++.||+ ++|+.+..+..+.. ++++++.. .............+..+.......+....+..|.+|++.|+
T Consensus 306 ~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g 381 (451)
T 1pw4_A 306 LLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWM----NPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAG 381 (451)
T ss_dssp HHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTS----CCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHH
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH----hcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhh
Confidence 9999999999 99988877666555 44443332 11112223333333333333344455567889999999999
Q ss_pred hHHHHHHHHHHH-HHHHHHHhhHHHHHhcCchhhHHHHHHHHHHHHHHHHhhc
Q 008615 491 RGISLAVLTNFG-SNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTV 542 (559)
Q Consensus 491 ~~~g~~~~~~~~-g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 542 (559)
++.|+.+.+..+ |..++|.+.|.+.+..|+...|++.+++.+++.++.++..
T Consensus 382 ~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 382 TAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 9999999999999999999999988888887777665543
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=1.5e-37 Score=311.81 Aligned_cols=365 Identities=17% Similarity=0.132 Sum_probs=284.4
Q ss_pred HHHHHHhhhcccccccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHH
Q 008615 105 FPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYA 184 (559)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~ 184 (559)
++++..+..+++.....+..|.+.++ +|++..+.|++.+++.+++.++.+++|+++||+|||++++++.++.+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~ 102 (438)
T 3o7q_A 30 LLCSLFFLWAVANNLNDILLPQFQQA-------FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYA 102 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------SCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHH
Confidence 33444566777777777888887766 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHH---HhchhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhccc-CCCC
Q 008615 185 LGALTT---AYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQI-NAVG 260 (559)
Q Consensus 185 i~~~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~-~~~~ 260 (559)
++.+++ +++++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+.++|.++++.+++.+. ....
T Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~ 182 (438)
T 3o7q_A 103 LGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVP 182 (438)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSC
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999 889999999999999999999999999999999999999999999999999999999999999988 5542
Q ss_pred c------------------------chHHHhhhHHHHHHHHHHhhc--cCCchHHHHHhhccCCCchhhhHHHHHHHHHh
Q 008615 261 G------------------------WRYMYGLSAPLALLMGIGMWS--LPPSPRWLLLRAVQGKGSLQEYKEQAISALGK 314 (559)
Q Consensus 261 ~------------------------wr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (559)
. ||+.|++.+++.++..++.++ .||+++.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~------------------------- 237 (438)
T 3o7q_A 183 HQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD------------------------- 237 (438)
T ss_dssp CCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT-------------------------
T ss_pred cccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc-------------------------
Confidence 3 999998888777766555443 3444320
Q ss_pred hcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHH-HHHc-CC
Q 008615 315 LRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPI-LQSA-GF 392 (559)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~ 392 (559)
.++ + .++++.+.++++++|+|.++...+..++..... ..+..+.|.+ +++. +.
T Consensus 238 --~~~--~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~ 292 (438)
T 3o7q_A 238 --NHS--D-----------------AKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQ----TACWSYLIRYAVEEIPGM 292 (438)
T ss_dssp --CCC--C-----------------SSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHSTTC
T ss_pred --ccc--c-----------------ccccchhhhHHHHHhChHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhccCCc
Confidence 000 0 001112234567888887777666555544433 3466788888 7776 66
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhccc
Q 008615 393 SAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISF 472 (559)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (559)
+. ..++.......++.+++.++.+++.||++||+.+..+.++.+++++++... ...+ ......+. +++....
T Consensus 293 ~~-~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~-g~~~~~~ 364 (438)
T 3o7q_A 293 TA-GFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA-----GGHV-GLIALTLC-SAFMSIQ 364 (438)
T ss_dssp CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-----CHHH-HHHHHHHH-HHHHTTH
T ss_pred ch-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc-----CCcH-HHHHHHHH-HHHHHHH
Confidence 66 788999999999999999999999999999999988887777776655431 2222 23333333 3333444
Q ss_pred ccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcC-chhhHHHHHHHHHHHHH
Q 008615 473 GPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLG-AENIFLLFAAIAFLAVL 536 (559)
Q Consensus 473 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g-~~~~~~~~~~~~~~~~~ 536 (559)
.+....+..|.+|++ ++.+.++.. ...+++.++|.+.|.+.+..| +...|++.+++.++..+
T Consensus 365 ~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 365 YPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 566678878888866 888888877 677999999999999999999 88888876655544433
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=100.00 E-value=3.3e-33 Score=284.47 Aligned_cols=399 Identities=13% Similarity=0.052 Sum_probs=258.5
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhhhh-hchHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhh
Q 008615 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADF-LGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHG 216 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 216 (559)
+|.+..+.+++.+++.++..++++++|+++|| +|||++++++.++.+++.++++++++++.++++|+++|++.+...+.
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 128 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPN 128 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccch
Confidence 89999999999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCCccc--chhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHhhcc-CCchHHHHHh
Q 008615 217 APLYIAETCPSQI--RGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSL-PPSPRWLLLR 293 (559)
Q Consensus 217 ~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~e~p~~~~~~ 293 (559)
..+++.|++|+++ |+.++++++.+.++|..++|.+++.+.+.. |||+.|++.++..++..++.++. ++. ...+
T Consensus 129 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-g~~~~f~~~~~~~~~~~~~~~~~~~~~---~~~~ 204 (491)
T 4aps_A 129 VSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA-GYHVAFSLAAIGMFIGLLVYYFGGKKT---LDPH 204 (491)
T ss_dssp HHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHHHHTT---CCSC
T ss_pred HHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHhCccc---cccc
Confidence 9999999999988 777888899999999999999999988877 99999999887777665554432 111 0000
Q ss_pred hccCCCchhhhHHHHHHHHHh----------------hcCCCCCCchhhHHHHHHHHHhh--hccccccccccchhhccc
Q 008615 294 AVQGKGSLQEYKEQAISALGK----------------LRRRPPGDKLSERQIEDTLVSLK--SSYTDEKSEGSFLEVFQG 355 (559)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 355 (559)
+ ++.+.+.+.++.++..+. ..+..+.++.............. .....+.++....+..+.
T Consensus 205 ~--~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (491)
T 4aps_A 205 Y--LRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRV 282 (491)
T ss_dssp C--SCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------C
T ss_pred c--cCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 0 011111112222221111 11111111110000000000000 000000000000111111
Q ss_pred CchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhh----
Q 008615 356 PNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLI---- 430 (559)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~---- 430 (559)
.......+...+.+... .....+.+.+.++ .+.+. ...+.......++.+++.++.+++.||++||+...
T Consensus 283 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~ 357 (491)
T 4aps_A 283 VSYIPLFIAAVLFWAIE----EQGSVVLATFAAERVDSSW-FPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKF 357 (491)
T ss_dssp TTHHHHHHHHHHHHHHH----GGGGTHHHHHHHHSCCCSS-SCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHH
T ss_pred HHHHHHHHHHHHHHHHH----hhccHHHHHHHHHHhccCc-cCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHH
Confidence 11222222222222222 2344556666665 34432 56777778888888999999999999999987655
Q ss_pred -hhHHHHHHHHHHHHHHHHhh---cCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHH
Q 008615 431 -GGVCGIALSLLLLSAYYKIL---GGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAI 506 (559)
Q Consensus 431 -~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i 506 (559)
.+..+.+++++++....... ............++.+.......+....+..|.+|++.|+++.|+.+....+|..+
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i 437 (491)
T 4aps_A 358 AVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSAL 437 (491)
T ss_dssp HHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666655554432110 11122333333344444444445666789999999999999999999999999999
Q ss_pred HHHhhHHHHHhcCchhhHHHHHHHHHHHHHHHHhhccCCCCC
Q 008615 507 VTFAFSPLKELLGAENIFLLFAAIAFLAVLFIVRTVPETKGL 548 (559)
Q Consensus 507 ~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (559)
++.+.+.+.+ .++...|.+++++++++.++.+++.++.+++
T Consensus 438 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 438 NAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp HHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999887765 4677788888888888777777666665543
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=100.00 E-value=3.4e-34 Score=281.12 Aligned_cols=354 Identities=14% Similarity=0.093 Sum_probs=268.7
Q ss_pred HHHHHhhhcccccccccccccccCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHH
Q 008615 106 PALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYAL 185 (559)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i 185 (559)
+++..++.+++.....+.++.+.++ +|.+..+.+++.+++.++..++++++|+++||+|||++++.+.++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 77 (375)
T 2gfp_A 5 LVLLVAVGQMAQTIYIPAIADMARD-------LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFML 77 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-------SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHH
Confidence 3445566677777777888877766 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhchhHhHHHHHHHHHHhhhhhhhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHH
Q 008615 186 GALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYM 265 (559)
Q Consensus 186 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~ 265 (559)
+.++++++++++.+++.|+++|++.+...+...+++.|++|+++|++++++...+..+|..++|.+++++.+.. +||+.
T Consensus 78 ~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~~ 156 (375)
T 2gfp_A 78 ATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMW-NWRAC 156 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHH-HHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc-cHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988877 99999
Q ss_pred HhhhHHHHHHHHH-HhhccCCchHHHHHhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhcccccc
Q 008615 266 YGLSAPLALLMGI-GMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEK 344 (559)
Q Consensus 266 f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (559)
|++.+++.++..+ ..+++||+++... ++++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------~~~~ 187 (375)
T 2gfp_A 157 YLFLLVLCAGVTFSMARWMPETRPVDA-------------------------------------------------PRTR 187 (375)
T ss_dssp HHHHHHHHHHHHCCCCCSSCCCSTTTC-------------------------------------------------CCCC
T ss_pred HHHHHHHHHHHHHHHHHHCcccCCCCc-------------------------------------------------cccc
Confidence 9999888887766 3456777653100 0011
Q ss_pred ccccchhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008615 345 SEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDL 423 (559)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 423 (559)
.+.++++++|+|.++...+...+..... ..+..+.|.++++ .+.+. ...+.......++.+++.++.+++.||+
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~-~~~g~~~~~~~~~~~~~~~~~~~l~~r~ 262 (375)
T 2gfp_A 188 LLTSYKTLFGNSGFNCYLLMLIGGLAGI----AAFEACSGVLMGAVLGLSS-MTVSILFILPIPAAFFGAWFAGRPNKRF 262 (375)
T ss_dssp TTTCSTHHHHHHHHHHHHHHHHHHHHHH----HHHHHHCSCSSHHHHHHHH-HHHHHHHHTHHHHHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHhcCcchHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334667777777666655544443333 2455666666655 56655 6788899999999999999999999998
Q ss_pred CCcchhhhhHHH-HHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHH
Q 008615 424 GRRPLLIGGVCG-IALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFG 502 (559)
Q Consensus 424 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 502 (559)
++ ....+..+ ...+...+.... ....+.+......++.. +......+....+..|.+| +.|+++.|+.+....+
T Consensus 263 ~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~g-~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~ 337 (375)
T 2gfp_A 263 ST--LMWQSVICCLLAGLLMWIPDW-FGVMNVWTLLVPAALFF-FGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNI 337 (375)
T ss_dssp HH--HHHHHHHHHHHTSSSSSHHHH-HHHHHHHHHHHHHHHHH-HHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHHHHHHHHHHhh-hccccHHHHHHHHHHHH-HHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHH
Confidence 87 22223222 222222111111 00112222223333333 3333345566688899988 8999999999999999
Q ss_pred HHHHHHHhhHHHHHhcCchhhHHH
Q 008615 503 SNAIVTFAFSPLKELLGAENIFLL 526 (559)
Q Consensus 503 g~~i~~~i~g~l~~~~g~~~~~~~ 526 (559)
|..++|.+.|.+.+..++...+.+
T Consensus 338 g~~~~~~~~g~l~~~~~~~~~~~~ 361 (375)
T 2gfp_A 338 GSGVLASLSAMLPQTGQGSLGLLM 361 (375)
T ss_dssp HHHCCSTTCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHH
Confidence 999999999999887776555554
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.96 E-value=1.3e-30 Score=258.89 Aligned_cols=360 Identities=14% Similarity=0.090 Sum_probs=233.1
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHH---HHHHhchhH-hHHHHHHHHHHhhhhhh
Q 008615 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGA---LTTAYAPGL-GVLLVGRLLYGLGIGLA 213 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~---~~~~~~~~~-~~l~~~r~l~G~~~g~~ 213 (559)
+|++..+.|++.+.+.+++.++++++|+++||+|||++++++..+++++. +.+.+++.. ..++..+++.|++.+..
T Consensus 38 ~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 117 (417)
T 2cfq_A 38 NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFC 117 (417)
T ss_dssp TCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999888776532 222333222 12345566666655555
Q ss_pred hhhhhhhhhccCCc--ccchhhhhHHHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHhhccCCchHHHH
Q 008615 214 MHGAPLYIAETCPS--QIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLL 291 (559)
Q Consensus 214 ~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~ 291 (559)
.+.....+.++.++ ++++...+.......+|..++|.+++++.+ . +||+.|++.+++.++..+..++.+|+++.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~-~~~~~f~~~~~~~~~~~~~~~~~~~~~~~-- 193 (417)
T 2cfq_A 118 FNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-I-NNQFVFWLGSGCALILAVLLFFAKTDAPS-- 193 (417)
T ss_dssp HHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-H-CSHHHHTTTTTTTTTHHHHSCSSCCCCSC--
T ss_pred HhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-h-chhHHHHHHHHHHHHHHHHHHHcCccccc--
Confidence 54444445555443 456777788877889999999999998876 3 89999999887766555555554443210
Q ss_pred HhhccCCCchhhhHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhhccccccccccchhhcccCchhHHHHHHHHHHHH
Q 008615 292 LRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQ 371 (559)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (559)
+ .+ .+ +..+. .+++....+++++++++.++...+........
T Consensus 194 -~---~~--~~--------------~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (417)
T 2cfq_A 194 -S---AT--VA--------------NAVGA------------------NHSAFSLKLALELFRQPKLWFLSLYVIGVSCT 235 (417)
T ss_dssp -S---SC--SS--------------SSSSS------------------CCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred -c---cc--cc--------------ccccc------------------ccccccHHHHHHHhcCCchhhHHHHHHHHHHH
Confidence 0 00 00 00000 00000111244567777666544432222221
Q ss_pred HhhChhhHHHhHHHHHHHcCCC---CchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHH
Q 008615 372 QITGQPSVLYYAGPILQSAGFS---AAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYK 448 (559)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (559)
. ..+..+.|.++.+.... .....+.......++.+++.++.+++.||++||+.+..+..+.+++.+.+..
T Consensus 236 ~----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~--- 308 (417)
T 2cfq_A 236 Y----DVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF--- 308 (417)
T ss_dssp H----HHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT---
T ss_pred H----HHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH---
Confidence 1 12334456666543211 1134566777777888899999999999999999888777776665444432
Q ss_pred hhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHH-HHHHHHHHHHHHHhhHHHHHhcCchhhHHHH
Q 008615 449 ILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLA-VLTNFGSNAIVTFAFSPLKELLGAENIFLLF 527 (559)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~ 527 (559)
..+.+..+...++.... .....+..+.+..|.+|++.|+++.++. +....+|++++|.+.|.+.+..|+...|.+.
T Consensus 309 --~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~ 385 (417)
T 2cfq_A 309 --ATSALEVVILKTLHMFE-VPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVL 385 (417)
T ss_dssp --CCSHHHHHHHTTHHHHH-HHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHH
T ss_pred --hccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHH
Confidence 12222222222222222 2222233457889999999999999995 7788899999999999999988888888888
Q ss_pred HHHHHHHHHHHHhhccCCCCCC
Q 008615 528 AAIAFLAVLFIVRTVPETKGLS 549 (559)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~ 549 (559)
+++.+++.++.+...+|+++.+
T Consensus 386 ~~~~l~~~~~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 386 GLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp HHHHHHHHHHHTTSSCCSCTTC
T ss_pred HHHHHHHHHHHHhhhcCCCchH
Confidence 8888888777666666655443
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.96 E-value=5.2e-28 Score=248.19 Aligned_cols=401 Identities=11% Similarity=0.044 Sum_probs=225.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhhhh-chHHHHHHHHHHHHHHHHHHHhch-hHhHHHHHHHHHHhhhhhhhhhh
Q 008615 140 LSAVQLGLVVSGSLYGALLGSILVYSIADFL-GRKRELIIAAVLYALGALTTAYAP-GLGVLLVGRLLYGLGIGLAMHGA 217 (559)
Q Consensus 140 ~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~ 217 (559)
.+..+.+++.+++.++..++.+++|+++||+ |||++++++.++.+++.+++++++ +++.++++|++.|++.+...+..
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV 130 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH
Confidence 9999999999999999999999999999999 999999999999999999999999 99999999999999999999999
Q ss_pred hhhhhccCCcccchhhhhH---HHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHhhccCC-chHHHHHh
Q 008615 218 PLYIAETCPSQIRGTLISL---KELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPP-SPRWLLLR 293 (559)
Q Consensus 218 ~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e-~p~~~~~~ 293 (559)
.+++.|++|+++|+++.+. ...+.++|.+++|.+++.+.+.. +||+.|++.+++.++..+..++..+ .++
T Consensus 131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-g~~~~f~~~~~~~~~~~~~~~~~~~~~~~----- 204 (524)
T 2xut_A 131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF-GAAVAFGIPGVLMFVATVFFWLGRKRYIH----- 204 (524)
T ss_dssp HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS-CHHHHHHHHHHHHHHHHHHHHSSSSSCCC-----
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHHHhcccccc-----
Confidence 9999999999999876666 99999999999999999988777 9999999988887776655543321 110
Q ss_pred hccCCCchhhhHHHHHHHH-HhhcCCCCCCchhhHHHH------------------------------HHHHHhhhcc--
Q 008615 294 AVQGKGSLQEYKEQAISAL-GKLRRRPPGDKLSERQIE------------------------------DTLVSLKSSY-- 340 (559)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~-- 340 (559)
.+.+ +.+..+..+.. ...+..... ........ ......+...
T Consensus 205 ---~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (524)
T 2xut_A 205 ---MPPE-PKDPHGFLPVIRSALLTKVEG-KGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQ 279 (524)
T ss_dssp ---CC---------------------CTT-HHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTH
T ss_pred ---cCCC-CccchhHHHHHHHHHhhhhcc-cCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhH
Confidence 0000 00000000000 000000000 00000000 0000000000
Q ss_pred -ccccccccchhhcccCchhHHHHHHHHHHHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 008615 341 -TDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAK 419 (559)
Q Consensus 341 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 419 (559)
+..+...+..+..+.+......... .........+.....+.+.+..+.+.+.-...+.+.....++.+++..+.+++
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (524)
T 2xut_A 280 LERARKSHPDAAVDGVRSVLRILVLF-ALVTPFWSLFDQKASTWILQANDMVKPQWFEPAMMQALNPLLVMLLIPFNNFV 358 (524)
T ss_dssp HHHSCCSCCSSSSTTTTTHHHHHHHH-TTSHHHHTTTSSTTTHHHHHHHHSCCCSSSCHHHHHTTSGGGHHHHGGGTTTC
T ss_pred HhhhhccccHhHHHHHHHHHHHHHHH-HHHHHHHHHHhccchhhHHhHHhcCCCeeecHHHHHHHHHHHHHHhHHHHHhh
Confidence 0000000000011111111111111 11111111111112222333333322100134455555445555666666555
Q ss_pred h----hhcCCc----chhhhhHHHHHHHHHHHHHHHHhh---cCchhHHHHHHHHHHHHhhcccccccceeecccCCccc
Q 008615 420 V----DDLGRR----PLLIGGVCGIALSLLLLSAYYKIL---GGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRT 488 (559)
Q Consensus 420 ~----d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 488 (559)
. +|.++| +.+..+.++.+++++++....... .......+....++.+.+.....+....+..|.+|++.
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~ 438 (524)
T 2xut_A 359 LYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM 438 (524)
T ss_dssp ------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC
T ss_pred hHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence 3 444332 344455555555554443210000 01122223333333344444445666688899999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHhc----------Cc-hhhHHHHHHHHHHHHHHHHhhccCCCCCCHHH
Q 008615 489 RGRGISLAVLTNFGSNAIVTFAFSPLKELL----------GA-ENIFLLFAAIAFLAVLFIVRTVPETKGLSLEE 552 (559)
Q Consensus 489 ~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~----------g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (559)
|++++|+.++...+|+.++|.+.|.+.+.. +. ...|++.+++.+++.++.+++.++.++++.++
T Consensus 439 ~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (524)
T 2xut_A 439 KGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARSYQMQDHYR 513 (524)
T ss_dssp CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHhccchhhh
Confidence 999999999999999999999999887632 21 22366677777777766666666655544433
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.49 E-value=4.9e-13 Score=133.88 Aligned_cols=145 Identities=14% Similarity=0.131 Sum_probs=129.4
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhh--chHHHHHHHHHHHH-HHHHHHHhc--hhHhHHHHHHHHHHhhhhh
Q 008615 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFL--GRKRELIIAAVLYA-LGALTTAYA--PGLGVLLVGRLLYGLGIGL 212 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~--Grr~~~~~~~~~~~-i~~~~~~~~--~~~~~l~~~r~l~G~~~g~ 212 (559)
+|.+..+.+++.+.+.++..++.++.|++.||+ |||+.+..+.++.. ++.++..+. .+.+.+++..++.|++.+.
T Consensus 283 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 362 (451)
T 1pw4_A 283 KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYG 362 (451)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhc
Confidence 789999999999999999999999999999999 99999988877776 666666666 3677888888999999998
Q ss_pred hhhhhhhhhhccCCcccchhhhhHHHHHHHH-HHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHhhcc
Q 008615 213 AMHGAPLYIAETCPSQIRGTLISLKELFIVL-GILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSL 283 (559)
Q Consensus 213 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 283 (559)
..+....++.|.+|+++|++++++......+ |..++|.+.+.+.+.. ||+..|++.+++.++..++.+++
T Consensus 363 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 363 PVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF-GWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-CSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHHHHH
Confidence 8898899999999999999999999999999 9999999999998887 89999999988888776666543
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.43 E-value=1.3e-12 Score=130.30 Aligned_cols=168 Identities=14% Similarity=0.035 Sum_probs=126.9
Q ss_pred HHHHhhChhhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHH
Q 008615 369 LFQQITGQPSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYK 448 (559)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (559)
++.............|.+.++.+.+. .+.+++.....++..++.++.|+++||+|||+.+..+.++.+++.++......
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~s~-~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~ 113 (438)
T 3o7q_A 35 FFLWAVANNLNDILLPQFQQAFTLTN-FQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE 113 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCCS-HHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccc
Confidence 33333333456667888888999888 88999999999999999999999999999999999999998888877733211
Q ss_pred hhcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHH-HhcC--------
Q 008615 449 ILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLK-ELLG-------- 519 (559)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~-~~~g-------- 519 (559)
..+...+....++.+.......+...+++.|.+|+++|+.++++.+....+|..+++.+.+.+. +..+
T Consensus 114 ---~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~ 190 (438)
T 3o7q_A 114 ---IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLD 190 (438)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHH
T ss_pred ---cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence 2233333344444444444555566689999999999999999999999999999999999998 5444
Q ss_pred -----------------chhhHHHHHHHHHHHHHHHHh
Q 008615 520 -----------------AENIFLLFAAIAFLAVLFIVR 540 (559)
Q Consensus 520 -----------------~~~~~~~~~~~~~~~~~~~~~ 540 (559)
|++.|++.+++.++..++.++
T Consensus 191 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 228 (438)
T 3o7q_A 191 KMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIML 228 (438)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 677777776666555554433
No 10
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.38 E-value=7.3e-13 Score=129.15 Aligned_cols=164 Identities=14% Similarity=0.098 Sum_probs=130.4
Q ss_pred hhHHHhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhhhHHHHHHHHHHHHHHHHhhcCchhH
Q 008615 377 PSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLV 456 (559)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (559)
.......|.+.++.+.+. .+.++......++..++.++.|+++||+|||+.+..+..+..++.+++... .+..
T Consensus 17 ~~~~~~~~~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------~~~~ 89 (375)
T 2gfp_A 17 TIYIPAIADMARDLNVRE-GAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT------SSLT 89 (375)
T ss_dssp HHHHHHHHHHHTTSSSTT-HHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH------HHHH
T ss_pred HHHhhhhHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh------ccHH
Confidence 345566777788888887 789999999999999999999999999999999999998888887777653 1233
Q ss_pred HHHHHHHHHHHhhcccccccceeecccCCccchhhHHHHHHHHHHHHHHHHHHhhHHHHHhcCchhhHHHHHHHHHHHHH
Q 008615 457 AVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFAAIAFLAVL 536 (559)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~ 536 (559)
.+....+..+.......+....++.|.+|+++|++++++.+....+|..++|.+.+.+.+..||+..+++.+++.++..+
T Consensus 90 ~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 90 VLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 33334444444444455666688899999999999999999999999999999999999888999999888877777666
Q ss_pred HHHhhccCCCC
Q 008615 537 FIVRTVPETKG 547 (559)
Q Consensus 537 ~~~~~~~~~~~ 547 (559)
+.++..||+++
T Consensus 170 ~~~~~~~~~~~ 180 (375)
T 2gfp_A 170 SMARWMPETRP 180 (375)
T ss_dssp CCCCSSCCCST
T ss_pred HHHHHCcccCC
Confidence 55556666543
No 11
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.38 E-value=1.9e-12 Score=127.94 Aligned_cols=146 Identities=14% Similarity=0.156 Sum_probs=125.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhchhHhHHHHHHHHHHhhhhhhhhhhhh
Q 008615 140 LSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPL 219 (559)
Q Consensus 140 ~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~ 219 (559)
.+..+.+++.++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....
T Consensus 256 ~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 335 (417)
T 2cfq_A 256 QGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFK 335 (417)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888999999999999999999999999999988888888888888888888888888888777777888
Q ss_pred hhhccCCcccchhhhhH-HHHHHHHHHHHHHHhhhcccCCCCcchHHHhhhHHHHHHHHHHhh-ccCCc
Q 008615 220 YIAETCPSQIRGTLISL-KELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMW-SLPPS 286 (559)
Q Consensus 220 ~i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~l~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~e~ 286 (559)
++.|.+|++.|+.+.++ ++....+|.+++|.+++++.+.. |++..|++.+++.++..++.+ +.+|.
T Consensus 336 ~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~-g~~~~f~~~~~~~l~~~~~~~~~~~~~ 403 (417)
T 2cfq_A 336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI-GFQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp HHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS-HHHHHHHHHHHHHHHHHHHHTTSSCCS
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc-CcHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 99999999999999998 48888899999999999988766 899999998888887766554 45553
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.36 E-value=1.3e-11 Score=124.91 Aligned_cols=157 Identities=16% Similarity=0.084 Sum_probs=121.7
Q ss_pred hHHHhHHHHHHH------cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhh-cCCcchhhhhHHHHHHHHHHHHHHHHhh
Q 008615 378 SVLYYAGPILQS------AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD-LGRRPLLIGGVCGIALSLLLLSAYYKIL 450 (559)
Q Consensus 378 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (559)
.+..+.+.++.+ .+.+. .+.+++.....++..++.++.|+++|| +|||+.+..+.++.+++.+++..
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~----- 104 (491)
T 4aps_A 31 GMRAILLYYMWFLISTGDLHITR-ATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLAL----- 104 (491)
T ss_dssp HHHHHHHHHHHHHHHHTSCCSCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHS-----
T ss_pred HHHHHHHHHHHhccchhhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH-----
Confidence 454556666655 67776 889999999999999999999999999 89999999999888888777653
Q ss_pred cCchhHHHHHHHHHHHHhhcccccccceeecccCCccc--hhhHHHHHHHHHHHHHHHHHHhhHHHHHhcCchhhHHHHH
Q 008615 451 GGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRT--RGRGISLAVLTNFGSNAIVTFAFSPLKELLGAENIFLLFA 528 (559)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~ 528 (559)
..+.+. +....++.+.......+...+++.|.+|++. |+.+.++.+....+|..++|.+.+.+.+..||++.|++.+
T Consensus 105 ~~~~~~-~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~ 183 (491)
T 4aps_A 105 PFGASA-LFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAA 183 (491)
T ss_dssp CCSTTH-HHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred hhhHHH-HHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 123333 3333334444444455666788999999988 7778888899999999999999999999999999999887
Q ss_pred HHHHHHHHHHHhh
Q 008615 529 AIAFLAVLFIVRT 541 (559)
Q Consensus 529 ~~~~~~~~~~~~~ 541 (559)
++.+++.++.++.
T Consensus 184 ~~~~~~~~~~~~~ 196 (491)
T 4aps_A 184 IGMFIGLLVYYFG 196 (491)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 7777666655443
No 13
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.31 E-value=5.7e-11 Score=121.30 Aligned_cols=157 Identities=12% Similarity=0.052 Sum_probs=119.6
Q ss_pred hHHHhHHHHHH-HcC------CCCchhHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcchhhhhHHHHHHHHHHHHHHHHh
Q 008615 378 SVLYYAGPILQ-SAG------FSAAADATRVSVVIGVFKLVMTWIAVAKVDDL-GRRPLLIGGVCGIALSLLLLSAYYKI 449 (559)
Q Consensus 378 ~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (559)
.+..+.+.++. +.+ .+. .+.+++.....++..++.++.|+++||+ |||+.+..+.++.+++.+++...
T Consensus 30 ~~~~~l~~~l~~~~~~~~~~~~s~-~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~--- 105 (524)
T 2xut_A 30 GMRNILTPFLMTALLLSIPEELRG-AVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF--- 105 (524)
T ss_dssp HHHHHHHHHHHHSCSSCCSSSTTT-TTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHhccccccccCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh---
Confidence 35556666654 466 666 7899999999999999999999999999 99999999888888877766541
Q ss_pred hcCchhHHHHHHHHHHHHhhcccccccceeecccCCccchhhHHHH---HHHHHHHHHHHHHHhhHHHHHhcCchhhHHH
Q 008615 450 LGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISL---AVLTNFGSNAIVTFAFSPLKELLGAENIFLL 526 (559)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~---~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~ 526 (559)
..+.+. +....+..+.......+...+++.|.+|++.|+++.++ .+....+|..++|.+.+.+.+..||+..|++
T Consensus 106 -~~~~~~-~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~ 183 (524)
T 2xut_A 106 -EHSVQG-FYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGI 183 (524)
T ss_dssp -SSCHHH-HHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHH
T ss_pred -cccHHH-HHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 113333 33333444444445556667899999999999876666 8888999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHh
Q 008615 527 FAAIAFLAVLFIVR 540 (559)
Q Consensus 527 ~~~~~~~~~~~~~~ 540 (559)
.+++.+++.++.++
T Consensus 184 ~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 184 PGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHH
Confidence 88777666655443
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.10 E-value=3.2e-10 Score=114.74 Aligned_cols=150 Identities=18% Similarity=0.053 Sum_probs=109.4
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhch-----hHhHHHHHHHHHHhhhhh
Q 008615 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP-----GLGVLLVGRLLYGLGIGL 212 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~-----~~~~l~~~r~l~G~~~g~ 212 (559)
.+.+............+...++.++.+++.||+|||+.++.+..+.+++.+..+... +...++..-+..+.....
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (491)
T 4gc0_A 307 LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMS 386 (491)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred cCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhH
Confidence 456666777777788888999999999999999999999999888887776665431 222222222222222223
Q ss_pred hhhhhhhhhhccCCcccchhhhhHHHHHHHHHHHHHHHhhhcccCCC-----CcchHHHhhhHHHHHHHHHHh-hccCCc
Q 008615 213 AMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAV-----GGWRYMYGLSAPLALLMGIGM-WSLPPS 286 (559)
Q Consensus 213 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~-----~~wr~~f~~~~~~~~~~~~~~-~~~~e~ 286 (559)
..+....+.+|.+|.+.|++++++......+|.++++.+.+.+.+.. .++.+.|++.++++++..+.. +++||+
T Consensus 387 ~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET 466 (491)
T 4gc0_A 387 WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET 466 (491)
T ss_dssp TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence 45677789999999999999999999999999999887766554321 145667888888887766654 678998
Q ss_pred h
Q 008615 287 P 287 (559)
Q Consensus 287 p 287 (559)
.
T Consensus 467 k 467 (491)
T 4gc0_A 467 K 467 (491)
T ss_dssp T
T ss_pred C
Confidence 5
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=71.06 E-value=2.5 Score=20.62 Aligned_cols=15 Identities=27% Similarity=0.235 Sum_probs=12.1
Q ss_pred HHHHhhhhhchHHHH
Q 008615 162 LVYSIADFLGRKREL 176 (559)
Q Consensus 162 ~~g~l~dr~Grr~~~ 176 (559)
++|.+..+||||.+-
T Consensus 2 lfgklikkfgrkais 16 (26)
T 2g9p_A 2 LFGKLIKKFGRKAIS 16 (26)
T ss_dssp HHHHHHHHHTSHHHH
T ss_pred cHHHHHHHHhHHHHH
Confidence 468999999999653
No 16
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=54.43 E-value=1.5e+02 Score=28.24 Aligned_cols=34 Identities=3% Similarity=-0.298 Sum_probs=18.4
Q ss_pred hhhhhhhhhccCCcccchhhhhHHHHHHHHHHHH
Q 008615 214 MHGAPLYIAETCPSQIRGTLISLKELFIVLGILL 247 (559)
Q Consensus 214 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~ 247 (559)
...........+...+|.+...+......+-.++
T Consensus 142 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~ 175 (460)
T 3mkt_A 142 AYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIP 175 (460)
T ss_dssp HHHHHHHHTTTTCTTSCCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 3334444555666666666666665555544443
No 17
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=28.01 E-value=1.2e+02 Score=20.43 Aligned_cols=31 Identities=10% Similarity=0.032 Sum_probs=16.6
Q ss_pred CchhhHHHHHHHHHHHHHHHHhhccCCCCCC
Q 008615 519 GAENIFLLFAAIAFLAVLFIVRTVPETKGLS 549 (559)
Q Consensus 519 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (559)
||..++.+...+.+++.-++-.++||..+..
T Consensus 31 g~AAv~f~~~~~~lv~l~~iG~~LPE~Sr~a 61 (77)
T 2dw3_A 31 GWAGGVFFGTLLLIGFFRVVGRMLPIQENQA 61 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTTTCSSC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCchhcccC
Confidence 4444454444444444444556678766543
No 18
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=26.53 E-value=1.2e+02 Score=25.31 Aligned_cols=25 Identities=16% Similarity=0.033 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhchH
Q 008615 149 VSGSLYGALLGSILVYSIADFLGRK 173 (559)
Q Consensus 149 ~s~~~l~~~i~~~~~g~l~dr~Grr 173 (559)
+.-|.+|+.+...+.|++.||..++
T Consensus 99 TgGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 99 SGGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccc
Confidence 3457788888899999999987643
No 19
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=24.53 E-value=69 Score=17.46 Aligned_cols=12 Identities=17% Similarity=-0.036 Sum_probs=7.5
Q ss_pred HHHhhccCCchH
Q 008615 277 GIGMWSLPPSPR 288 (559)
Q Consensus 277 ~~~~~~~~e~p~ 288 (559)
+....+++|+|+
T Consensus 17 iFFAI~FRePPr 28 (32)
T 3arc_T 17 FFFAIFFREPPR 28 (32)
T ss_dssp HHHHHHTSCCCC
T ss_pred HHHhhhhcCCCC
Confidence 344466788875
Done!