BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008616
         (559 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8RWG1|Y4139_ARATH Uncharacterized aarF domain-containing protein kinase At4g31390,
           chloroplastic OS=Arabidopsis thaliana GN=At4g31390 PE=1
           SV=1
          Length = 682

 Score =  905 bits (2340), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/564 (80%), Positives = 489/564 (86%), Gaps = 25/564 (4%)

Query: 3   LINPNCINSLVFSTNKHRQTNKCRNVFSTSKESSFRLSTAPQ--RSERFST------SIS 54
           L+NPN      FS N+ R+  +  +     +++  R   A +  RS  FS       S++
Sbjct: 9   LLNPN------FSLNQRRR--RINHAVLNRRDALLRSLNAVELRRSRTFSAVRTSNFSVT 60

Query: 55  ASDASVNGVTTTPAD---------KRSLELVKSSKAMEQLDIERGVCVPFRKYTPETVRN 105
           A+   V G  +T A          +R + + KSS A+EQLDIERGVCVPFRKY+PETVR+
Sbjct: 61  AAATDVGGRNSTDASVMTTAMSGVERGVRVGKSSSALEQLDIERGVCVPFRKYSPETVRS 120

Query: 106 KVLESRGAVISLMSRGVEIVWSLGLYWSNLTYDCLVGRDKEVVPDRARQLRNLLCNLGPS 165
           KVLESRGAV+SL+SRGVEIVW+LGLYWS LTYD LVGRD+EVVP RARQLRNLLCNLGPS
Sbjct: 121 KVLESRGAVVSLVSRGVEIVWTLGLYWSTLTYDFLVGRDEEVVPFRARQLRNLLCNLGPS 180

Query: 166 FIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQ 225
           FIKAGQVLANRPDI+REDYMNELCILQDDVP FPN+VAFNIIEEELG+PLE +FSKISSQ
Sbjct: 181 FIKAGQVLANRPDIIREDYMNELCILQDDVPPFPNEVAFNIIEEELGQPLENIFSKISSQ 240

Query: 226 TIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLASFLNGISIQKLGCN 285
           TIAAASLGQVYRATLR TGEDVAIKVQRP IEPIIYRDLFLFRTLASFLNG S+QKLGCN
Sbjct: 241 TIAAASLGQVYRATLRATGEDVAIKVQRPQIEPIIYRDLFLFRTLASFLNGFSLQKLGCN 300

Query: 286 AELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRVYKRLSGSRVLVMEWIDG 345
           AELIVDEFGEKLLEELDYTLEARN+EDFLENFKDDPTVKIP VYK L G RVLVMEWIDG
Sbjct: 301 AELIVDEFGEKLLEELDYTLEARNIEDFLENFKDDPTVKIPGVYKNLCGPRVLVMEWIDG 360

Query: 346 IRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRDGRIAYVDFG 405
           IRCTDPQAIK AGID+ GFLTVGVSAALRQLLEFGLFHGDPHPGNIFAM+DGRIAYVDFG
Sbjct: 361 IRCTDPQAIKDAGIDLNGFLTVGVSAALRQLLEFGLFHGDPHPGNIFAMQDGRIAYVDFG 420

Query: 406 NVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLAKGTDVSPIIPALEAIWQNSSG 465
           NVA LSQQNKQILIDAVVHAVNEDY EMANDFTRLGFLAK TDVSPI+PALEAIWQNS+G
Sbjct: 421 NVAVLSQQNKQILIDAVVHAVNEDYGEMANDFTRLGFLAKDTDVSPIVPALEAIWQNSAG 480

Query: 466 KGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLTQEGICFTLKPDFKFLEVAYPY 525
           KGLADFNFRSVTGQFNKLVY++ IRIPERFSLVIRSLLTQEGICFTLKPDFKFLEVAYPY
Sbjct: 481 KGLADFNFRSVTGQFNKLVYDFPIRIPERFSLVIRSLLTQEGICFTLKPDFKFLEVAYPY 540

Query: 526 VAKRLLTDPNPALRERLIQAKFKE 549
           VAKRLLTDPNPALRERLIQ  FK+
Sbjct: 541 VAKRLLTDPNPALRERLIQVLFKD 564


>sp|P73121|Y1919_SYNY3 Uncharacterized protein slr1919 OS=Synechocystis sp. (strain PCC
           6803 / Kazusa) GN=slr1919 PE=3 SV=1
          Length = 566

 Score =  438 bits (1126), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 212/453 (46%), Positives = 299/453 (66%), Gaps = 4/453 (0%)

Query: 96  RKYTPETVRNKVLESRGAVISLMSRGVEIVWSLGLYWSNLTYDCLVGRDKEVVPDRARQL 155
           R+Y  + + N     R     ++ R +E+VWS G + + L +D   G+ +     RA  L
Sbjct: 17  RRYNAQAIANYY---RRRPWKVLWRALEVVWSFGFFLTCLLWDQWTGQVEYYKRQRAEDL 73

Query: 156 RNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPL 215
           R LL  LGP+FIK GQ L+ RPD+VR D++ EL  LQD +P F N +AF ++EE+LG  +
Sbjct: 74  RELLTKLGPTFIKVGQALSTRPDLVRRDFLEELIKLQDQLPPFDNDLAFQLMEEQLGMKV 133

Query: 216 EAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLASFLN 275
           +  + +IS+  +AAASLGQVYRA L  +GE+VA+KVQRP + P +  DL+L R  A    
Sbjct: 134 DEAYREISAHPVAAASLGQVYRAMLF-SGEEVAVKVQRPNLRPRLSLDLYLMRLGAQKFG 192

Query: 276 GISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRVYKRLSGS 335
                 LG +  LIVDEFG KL EE+DY  E RN E F ENF  D  VK+P +Y + S  
Sbjct: 193 RFLPLNLGHDLTLIVDEFGIKLFEEIDYLNEGRNAEKFAENFHGDAEVKVPCIYWQYSNQ 252

Query: 336 RVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGNIFAMR 395
           +VL +EWI G + TD   I+ AG+D    + +GV++ LRQLLE G FH DPHPGN+FA  
Sbjct: 253 KVLTLEWIQGFKLTDTDKIRAAGLDPSDIIRIGVTSGLRQLLEHGFFHADPHPGNLFATL 312

Query: 396 DGRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLAKGTDVSPIIPA 455
           DGR+AY+DFG + +L    K+ +  ++V  +N+DY  +  DF  LGFLA  TD++PIIPA
Sbjct: 313 DGRMAYIDFGMMDQLEPGTKETIASSIVQLINKDYLALTEDFIALGFLAPNTDITPIIPA 372

Query: 456 LEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLTQEGICFTLKPD 515
           LE ++ ++ G+ + DFNF+++T  F++L+Y+Y  R+P +F+L+IRSL+TQEG+  +L P+
Sbjct: 373 LENVFGSAIGQSVQDFNFKTITDDFSELMYDYPFRVPAKFALIIRSLVTQEGLALSLDPN 432

Query: 516 FKFLEVAYPYVAKRLLTDPNPALRERLIQAKFK 548
           FK +EVAYPYVA+RLLT  +P LR +LI   FK
Sbjct: 433 FKIVEVAYPYVARRLLTGESPQLRRQLIDVLFK 465


>sp|Q55680|Y005_SYNY3 Uncharacterized protein sll0005 OS=Synechocystis sp. (strain PCC
           6803 / Kazusa) GN=sll0005 PE=3 SV=1
          Length = 681

 Score =  399 bits (1024), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 200/457 (43%), Positives = 297/457 (64%), Gaps = 13/457 (2%)

Query: 97  KYTPETV----RNKVLESRGAVISLMSRGVEIVWSLGLYWSNLTYDCLVGRDKEVVPDRA 152
           +Y P+ +    R + L+  G +I+++   +  +  LG++W  L      G+D  V   +A
Sbjct: 52  EYHPDLIMEFYRKRPLQVLGRLINILFPLLRFI--LGIWWEKLR-----GKDPTVSRAKA 104

Query: 153 RQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELG 212
            QLR LL NLGP++IK GQ L+ RPD+V   +++EL  LQD +PSFPN+VA+  IEEELG
Sbjct: 105 IQLRELLTNLGPTYIKVGQALSTRPDLVPPVFLDELTTLQDQLPSFPNEVAYRFIEEELG 164

Query: 213 RPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLAS 272
            P E +++++S + IAAASLGQVY+  L+ TGE VA+KVQRP +   I  D+++ R+L S
Sbjct: 165 APAEEIYAELSPEPIAAASLGQVYKGKLK-TGEAVAVKVQRPDLVRRITLDIYIMRSL-S 222

Query: 273 FLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRVYKRL 332
                S+++L  +   I DE   ++ EE++Y  EA N E F + +   P + +P +Y + 
Sbjct: 223 LWARRSVKRLRSDLVAITDELASRVFEEMNYYQEAINGEKFAQLYGSLPEIYVPSIYWQY 282

Query: 333 SGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGNIF 392
           +G RVL MEW++GI+ T+ +AI+  GID    + VGV  +LRQLLE G FH DPHPGN+ 
Sbjct: 283 TGRRVLTMEWVEGIKLTNIKAIQAQGIDATHLVEVGVQCSLRQLLEHGFFHADPHPGNLL 342

Query: 393 AMRDGRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLAKGTDVSPI 452
           AM DGR+AY+DFG ++ +    +  LI+AVVH VN D+  +A D+ +L FL   TD+ PI
Sbjct: 343 AMADGRLAYLDFGMMSTIQPYQRYGLIEAVVHLVNRDFDSLAKDYVKLDFLKPDTDLKPI 402

Query: 453 IPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLTQEGICFTL 512
           IPAL  ++ N+ G  +A+ NF+S+T Q + ++Y +  R+P  ++L+IRS++T EGI   +
Sbjct: 403 IPALGQVFGNALGASVAELNFKSITDQMSAMMYEFPFRVPAYYALIIRSMVTLEGIAIGI 462

Query: 513 KPDFKFLEVAYPYVAKRLLTDPNPALRERLIQAKFKE 549
            P+FK L  AYPY+AKRLLTD +  LR  L +  FKE
Sbjct: 463 DPNFKVLSKAYPYIAKRLLTDQSEELRTSLKELLFKE 499


>sp|Q9MA15|Y1796_ARATH Uncharacterized aarF domain-containing protein kinase At1g79600,
           chloroplastic OS=Arabidopsis thaliana GN=At1g79600 PE=1
           SV=1
          Length = 711

 Score =  357 bits (916), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 180/452 (39%), Positives = 272/452 (60%), Gaps = 4/452 (0%)

Query: 98  YTPETVRNKVLESRGAVISLMSRGVEIVWSLGLYWSNLTYDCLVGRDKEVVPDRARQLRN 157
           Y+PE +  K           + R +EI+ +LG +   L  D   G  ++ +  RA +LR 
Sbjct: 96  YSPELIARK---HGSQPFKALRRSLEILGALGGFALKLGIDQKQGNLEKNMKKRAIELRR 152

Query: 158 LLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEA 217
           +   LGP+F+K GQ L+ RPD+   DY+ EL  LQD +P+FP+  AF  IE EL   LE 
Sbjct: 153 IFTRLGPTFVKLGQGLSTRPDLCPPDYLEELAELQDALPTFPDAEAFACIERELDLSLET 212

Query: 218 VFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLASFLNGI 277
           +FS +S + IAAASLGQVY+A LR +G+ VA+KVQRPGIE  I  D +L R +   +N  
Sbjct: 213 IFSSVSPEPIAAASLGQVYKAQLRYSGQVVAVKVQRPGIEEAIGLDFYLIRGVGKLINKY 272

Query: 278 SIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRVYKRLSGSRV 337
            +  +  +   ++DEF  ++ +EL+Y  EA+N   F + + D   V +P ++   +  +V
Sbjct: 273 -VDFITTDVLTLIDEFACRVYQELNYVQEAQNARRFKKLYADKADVLVPDIFWDYTSRKV 331

Query: 338 LVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRDG 397
           L MEW++G +  +  AI+  G+ V   +  G+  +LRQLLE+G FH DPHPGN+ A  DG
Sbjct: 332 LTMEWVEGTKLNEQLAIESQGLKVLDLVNTGIQCSLRQLLEYGFFHADPHPGNLLATPDG 391

Query: 398 RIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLAKGTDVSPIIPALE 457
           ++A++DFG ++E  ++ +  +I  VVH VN DY  MA D+  L FL+   DV+PIIPAL 
Sbjct: 392 KLAFLDFGMMSETPEEARFAIIGHVVHLVNRDYEAMARDYYALKFLSPDVDVTPIIPALR 451

Query: 458 AIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLTQEGICFTLKPDFK 517
             + ++    +++ NF+++      + Y Y   +P  ++L++RSL   EG+     P+FK
Sbjct: 452 DFFDDALNYTVSELNFKTLVDGLGAVFYQYPFNVPPYYALILRSLTVLEGLALYADPNFK 511

Query: 518 FLEVAYPYVAKRLLTDPNPALRERLIQAKFKE 549
            L  +YPY AKRLLTDPNP LR+ LI+  FK+
Sbjct: 512 VLAASYPYFAKRLLTDPNPYLRDALIELLFKD 543


>sp|Q94BU1|Y1181_ARATH Uncharacterized aarF domain-containing protein kinase At1g71810,
           chloroplastic OS=Arabidopsis thaliana GN=At1g71810 PE=1
           SV=1
          Length = 692

 Score =  318 bits (814), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 158/420 (37%), Positives = 251/420 (59%), Gaps = 11/420 (2%)

Query: 131 YWSNLTY-DCLVGRDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELC 189
           YW  L   D  + R  ++   RA +LR LL  LGP+++K  Q +++RPD++   Y++EL 
Sbjct: 98  YWFGLRLADEALERSDQMFKVRAAELRKLLVELGPAYVKIAQAVSSRPDLIPPIYLDELS 157

Query: 190 ILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAI 249
           +LQD +  F  +VAFN+IE+ELG P++ +FS+IS + +AAASLGQVY+A LR +G+ VA+
Sbjct: 158 LLQDQITPFSTEVAFNMIEDELGLPIDELFSEISPEPVAAASLGQVYQARLRRSGKVVAV 217

Query: 250 KVQRPGIEPIIYRDLFLFRTLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARN 309
           KVQRPG+   I  D  + R +A  +      +   + E +VDE+   L +E+DY  EA+N
Sbjct: 218 KVQRPGVRAAIALDTLILRYIAGLIKKAG--RFNSDLEAVVDEWATSLFKEMDYLNEAQN 275

Query: 310 MEDFLENFKDDPTVKIPRVYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGV 369
              F + +     V +P++Y   S S+VLVMEW++G +  +   +          + VGV
Sbjct: 276 GIKFRKLYGGIKDVLVPKMYTEYSTSKVLVMEWVEGQKLNEVNDLY--------LVEVGV 327

Query: 370 SAALRQLLEFGLFHGDPHPGNIFAMRDGRIAYVDFGNVAELSQQNKQILIDAVVHAVNED 429
             +  QLLE+G +H DPHPGN     DG++AY+DFG + +   + +   ++A +H VN D
Sbjct: 328 YCSFNQLLEYGFYHADPHPGNFLRTYDGQLAYLDFGMMGDFRPELRDGFMEACLHLVNRD 387

Query: 430 YAEMANDFTRLGFLAKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRI 489
           +  +A DF  LG L    + S +  AL  ++Q++  +G+ + +F  + G   K +Y ++ 
Sbjct: 388 FKALAKDFVTLGLLPPTAEKSAVTKALTDVFQDAISRGVRNISFGDLLGDLGKTMYRFKF 447

Query: 490 RIPERFSLVIRSLLTQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNPALRERLIQAKFKE 549
           RIP  FSLVIRSL   EGI   + P++K L   YP++A+++LTD +P L+  L    ++E
Sbjct: 448 RIPPYFSLVIRSLAVLEGIAIGISPNYKVLGSTYPWIARKILTDSSPQLKSSLQNLLYEE 507


>sp|P73627|Y1770_SYNY3 Uncharacterized protein sll1770 OS=Synechocystis sp. (strain PCC
           6803 / Kazusa) GN=sll1770 PE=3 SV=1
          Length = 585

 Score =  248 bits (634), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 140/429 (32%), Positives = 233/429 (54%), Gaps = 13/429 (3%)

Query: 102 TVRNKVLESRGAVISLMSRGVEIVWSLGLYWS---NLTYDCLVGRDKEVVPDRARQLRNL 158
           ++  + ++  G V++L+ +     W  G  WS     T + L  R +     +A+ +R  
Sbjct: 40  SITRRRIDIWGFVLTLLYQ----FWLNGKKWSYAGGYTEEKLQQRRRR----QAKWIREN 91

Query: 159 LCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAV 218
           L +LGP+FIK GQ+ + R D+   +Y+ EL  LQD+VP+F  + A  IIEEELG+P+  +
Sbjct: 92  LLSLGPTFIKVGQLFSTRSDLFPAEYVEELSKLQDEVPAFSYEQAAGIIEEELGKPIAKL 151

Query: 219 FSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLASFLNGIS 278
           +       +AAASLGQV++A L  TGEDV +KVQRPG++ +   DL + + +A +     
Sbjct: 152 YRSFDPVPLAAASLGQVHKAQL-HTGEDVVVKVQRPGLKKLFTIDLAILKKIAQYFQNHP 210

Query: 279 IQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRVYKRLSGSRVL 338
               G +   I +E  + L +E DY  E R+ + F  NF+ +  VK+PRVY R + +++L
Sbjct: 211 KWGRGRDWNGIYEECCKILWQETDYLREGRSADTFRRNFRGEDWVKVPRVYWRYTSTQIL 270

Query: 339 VMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGNI-FAMRDG 397
            +E++ GI+ +   A++ AG++      +G  A L QLL  G FH DPHPGN+  +   G
Sbjct: 271 TLEYLPGIKISHYDALEAAGLERKELAQLGARAYLFQLLNHGFFHADPHPGNLAVSPEAG 330

Query: 398 RIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLAKGTDVSPIIPALE 457
            + + DFG + E++   K  L+D +     ++   + N    LG L +  D+ PI  +++
Sbjct: 331 ELIFYDFGMMGEITPDTKNKLMDTLFGVAEKNAERIVNSLVALGALKETEDMGPIRRSVQ 390

Query: 458 AIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLTQEGICFTLKPDFK 517
            +  N   K   + +   ++    ++ Y+   R P  F+ V+R+  T EG+   L PDF 
Sbjct: 391 FLLDNFMDKPFEEQSITKISDDLYEIAYDQPFRFPATFTFVMRAFSTLEGVGKGLDPDFN 450

Query: 518 FLEVAYPYV 526
           F+ VA P+ 
Sbjct: 451 FMAVAQPFA 459


>sp|Q55884|Y095_SYNY3 Uncharacterized protein sll0095 OS=Synechocystis sp. (strain PCC
           6803 / Kazusa) GN=sll0095 PE=3 SV=1
          Length = 567

 Score =  220 bits (561), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 134/427 (31%), Positives = 215/427 (50%), Gaps = 9/427 (2%)

Query: 122 VEIVWSLGLYWSNLTYDCLVGRDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVR 181
           V +++   L W  LT      R  +    RA+ L   L  LGP+FIK GQ L+ R DI+ 
Sbjct: 32  VFLLFVFFLSWDRLT----APRSAQRRYRRAQWLVQQLLYLGPTFIKIGQSLSTRADIIP 87

Query: 182 EDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLR 241
            +Y+     LQD VP F ++ A  +IE+EL   ++ +F +     +A+ASLGQV+RA L 
Sbjct: 88  AEYIEAFTQLQDRVPPFDSRQAIAVIEQELHGAIDEIFQQFEVTPLASASLGQVHRAVL- 146

Query: 242 ETGEDVAIKVQRPGIEPIIYRDLFLF----RTLASFLNGISIQKLGCNAELIVDEFGEKL 297
            TGE V +KVQRPG++ ++  D  L     R    +L G          E I  EF   L
Sbjct: 147 PTGEAVVVKVQRPGLDSLLNLDFELLHQTLRLAKRWLPGFRRLAQKYEIEAIYQEFFSLL 206

Query: 298 LEELDYTLEARNMEDFLENFKDDPTVKIPRVYKRLSGSRVLVMEWIDGIRCTDPQAIKGA 357
             E+DY  E +N E F +NF D P V++P +Y + +   VL +E++ GI+  D QA++ A
Sbjct: 207 FLEIDYIHEGKNAERFRQNFADYPRVRVPEIYWQYTTRMVLTLEYLPGIKVDDRQALETA 266

Query: 358 GIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRDGRIAYVDFGNVAELSQQNKQI 417
           GI++   +  G+ A L+QLL  G F  DPHPGN+     G + + DFG +AE+    K  
Sbjct: 267 GINLDLVIQTGICAYLKQLLVDGFFQSDPHPGNMAVDSQGDLIFYDFGTMAEVKIIAKDQ 326

Query: 418 LIDAVVHAVNEDYAEMANDFTRLGFLAKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVT 477
           ++      + +D  ++      +G +    D+SPI   +  +  N   K +    F  V 
Sbjct: 327 MVQTFFAVLRKDTNQVLEALIYMGLVEPKGDLSPIKRIINFLLDNFRDKPIDIKAFDQVG 386

Query: 478 GQFNKLVYNYRIRIPERFSLVIRSLLTQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNPA 537
            +   +      R+P + + +++S+ T +GI   L P +  +  + P++    +  P  +
Sbjct: 387 EEVYAMFQQQPFRLPPQMTFILKSISTLDGIARALDPRYNLIAASQPFIQSITVAQPKRS 446

Query: 538 LRERLIQ 544
           L   L+Q
Sbjct: 447 LAMALLQ 453


>sp|Q7NZD1|UBIB_CHRVO Probable ubiquinone biosynthesis protein UbiB OS=Chromobacterium
           violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 /
           NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=ubiB PE=3 SV=1
          Length = 508

 Score =  218 bits (554), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 131/395 (33%), Positives = 202/395 (51%), Gaps = 8/395 (2%)

Query: 139 CLVGRDKEV-VPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPS 197
           C V RD    +P R   +R  L +LGP F+K GQVL+ R D++  +Y +EL +LQD VP 
Sbjct: 38  CPVRRDTSAPLPQR---VRLALESLGPIFVKFGQVLSTRRDLLPPEYADELALLQDRVPP 94

Query: 198 FPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRET----GEDVAIKVQR 253
           F   +A  ++E  LGR +E +F     + +A+AS+ QV++A LR+     G +VA+KV R
Sbjct: 95  FDGDIARQVVERSLGRKVEELFVDFDLKPVASASVAQVHKAWLRQPDGGRGREVAVKVLR 154

Query: 254 PGIEPIIYRDLFLFRTLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDF 313
           PGI P+I +DL L RTLA ++  +           +V EF + L +ELD   EA N    
Sbjct: 155 PGILPVIEQDLSLMRTLAGWVEKLFADGKRLKPREVVAEFDKYLHDELDMMHEAANASQL 214

Query: 314 LENFKDDPTVKIPRVYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAAL 373
             NFK    + +P V+   S   VL +EW+ GI     + ++ AG+D+      GV    
Sbjct: 215 RRNFKGSDMLIVPEVFYDYSSREVLTLEWMHGIPVGQIERLREAGVDLQKLSRFGVEIFF 274

Query: 374 RQLLEFGLFHGDPHPGNIFAMRDGRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEM 433
            Q+   G FH D HPGNIF   DGR   +DFG V  L+  +K  L    +   N DY  +
Sbjct: 275 TQVFRHGFFHADMHPGNIFVAADGRYIALDFGIVGSLTDTDKHYLAVNFLAFFNRDYHRV 334

Query: 434 ANDFTRLGFLAKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPE 493
           A      G++ + T    +  A+  + +    K L++ +F  V  +  +    + + I  
Sbjct: 335 ATAHIESGWVPRDTRAEELEAAVRTVCEPIFEKPLSEISFGMVLLRLFETSRRFNVEIQP 394

Query: 494 RFSLVIRSLLTQEGICFTLKPDFKFLEVAYPYVAK 528
           +  L+ ++LL  EG+   L P+    + A P++ K
Sbjct: 395 QLVLLQKTLLNIEGLGRQLDPELDLWDTAKPFLTK 429


>sp|Q9K0N0|UBIB_NEIMB Probable ubiquinone biosynthesis protein UbiB OS=Neisseria
           meningitidis serogroup B (strain MC58) GN=ubiB PE=3 SV=1
          Length = 503

 Score =  210 bits (535), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 125/379 (32%), Positives = 198/379 (52%), Gaps = 1/379 (0%)

Query: 152 ARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEEL 211
           A +LR  L +LGP FIK GQVL+ RPD++  DY  EL  LQD VP F  +++   IE+ L
Sbjct: 51  AVRLRLALESLGPIFIKFGQVLSTRPDLIPHDYAVELAKLQDKVPPFDARLSREQIEKSL 110

Query: 212 GRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLA 271
           G+ +E ++++  ++ IA+AS+ QV++A L  +GE VA+KV RP + P+I +DL L R  A
Sbjct: 111 GQSIEKLYAEFETEPIASASIAQVHKARL-HSGEQVAVKVLRPNLLPVIEQDLSLMRFGA 169

Query: 272 SFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRVYKR 331
            ++  +           +V EF + L +ELD   EA N      NF++   + +P+V+  
Sbjct: 170 GWVERLFADGKRLKPREVVAEFDKYLHDELDLMREAANASQLGRNFQNSDMLIVPKVFYD 229

Query: 332 LSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGNI 391
              S VL +EW+DG   +D   +K  GID+      GV     Q+   G FH D HPGNI
Sbjct: 230 YCTSDVLTIEWMDGTPVSDIAKLKADGIDLHKLADYGVEIFFTQVFRDGFFHADMHPGNI 289

Query: 392 FAMRDGRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLAKGTDVSP 451
               D R   +DFG V  L+  +K+ L    +   N DY  +A      G++   T    
Sbjct: 290 LVAADNRYIALDFGIVGTLTDYDKRYLAINFLAFFNRDYRRVATAHIESGWVPADTRAEE 349

Query: 452 IIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLTQEGICFT 511
           +  A+ A+ +    K ++  +F  V  +  ++   + + I  +  L+ ++LL  EG+   
Sbjct: 350 LEAAVRAVCEPVFNKPISQISFGLVLMRLFEVSRRFNVEIQPQLVLLQKTLLNIEGLGRQ 409

Query: 512 LKPDFKFLEVAYPYVAKRL 530
           L PD    + A P++ K +
Sbjct: 410 LDPDLDLWKTAKPFLVKWM 428


>sp|Q9JVQ5|UBIB_NEIMA Probable ubiquinone biosynthesis protein UbiB OS=Neisseria
           meningitidis serogroup A / serotype 4A (strain Z2491)
           GN=ubiB PE=3 SV=1
          Length = 503

 Score =  206 bits (525), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 125/379 (32%), Positives = 197/379 (51%), Gaps = 1/379 (0%)

Query: 152 ARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEEL 211
           A +LR  L +LGP FIK GQVL+ RPD++  DY  EL  LQD VP F  +++   IE+ L
Sbjct: 51  AVRLRLALESLGPIFIKFGQVLSTRPDLIPHDYAVELAKLQDKVPPFDARLSREQIEKSL 110

Query: 212 GRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLA 271
           G+ +E ++++  ++ IA+AS+ QV++A L  +GE VA+KV RP + P+I +DL L R  A
Sbjct: 111 GQSIEKLYAEFETEPIASASIAQVHKARL-HSGERVAVKVLRPNLLPLIEQDLSLMRFGA 169

Query: 272 SFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRVYKR 331
           +++  +           +V EF + L +ELD   EA N      NF +   + +P+V+  
Sbjct: 170 AWVERLFSDGRRLKPLEVVAEFDKYLHDELDLMREAANAGQLGRNFHNSNMLIVPKVFYD 229

Query: 332 LSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGNI 391
              S VL +EW+DG    D   +K  GID+      GV     Q+   G FH D HPGNI
Sbjct: 230 YCTSDVLTIEWMDGTPVADIAKLKADGIDLHKLADYGVEIFFTQVFRDGFFHADMHPGNI 289

Query: 392 FAMRDGRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLAKGTDVSP 451
               D R   +DFG V  L+  +K+ L    +   N DY  +A      G++   T    
Sbjct: 290 LVAADNRYIALDFGIVGTLTDYDKRYLAINFLAFFNRDYRRVATAHIESGWVPADTRAEE 349

Query: 452 IIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLTQEGICFT 511
           +  A+ A+ +    K ++  +F  V  +  ++   + + I  +  L+ ++LL  EG+   
Sbjct: 350 LEAAVRAVCEPVFNKPISQISFGLVLMRLFEVSRRFNVEIQPQLVLLQKTLLNIEGLGRQ 409

Query: 512 LKPDFKFLEVAYPYVAKRL 530
           L PD    + A P++ K +
Sbjct: 410 LDPDLDLWKTAKPFLVKWM 428


>sp|B7V3F8|UBIB_PSEA8 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
           aeruginosa (strain LESB58) GN=ubiB PE=3 SV=1
          Length = 533

 Score =  197 bits (502), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 128/407 (31%), Positives = 204/407 (50%), Gaps = 7/407 (1%)

Query: 126 WSLGLYWSNLTYDCLVGRDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYM 185
           W L L  + L +  L  R  E+   R  +LR  L +LGP FIK GQ+L+ R D++ +D  
Sbjct: 33  WWLRLLGATLPWRWLPRRKLELT--RGARLRLALQDLGPIFIKFGQILSTRRDLLPDDIA 90

Query: 186 NELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGE 245
           NEL  LQD VP FP ++A   IEE+LG  +E VF++   + +A+AS+ QV+ A L+ +GE
Sbjct: 91  NELAWLQDKVPPFPPELAVKRIEEQLGAKIEQVFARFEREPLASASVAQVHAARLK-SGE 149

Query: 246 DVAIKVQRPGIEPIIYRDLFLFRTLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTL 305
           +V +KV RP +EP+I  D+     LA     +S +    +   +V ++ + +++ELD   
Sbjct: 150 EVVVKVIRPNLEPVIRSDIAWLFILARLAERVSSEARRLHPVEVVSDYEKTIVDELDLLR 209

Query: 306 EARNMEDFLENFKDDPTVKIPRVYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFL 365
           EA N      NF+  P + +P+VY      +VLVME I GI  TD + ++    D     
Sbjct: 210 EAANASQLRRNFEGSPLLYVPQVYWDWCRPKVLVMERIYGIPVTDLETLRDQRTDFKALA 269

Query: 366 TVGVSAALRQLLEFGLFHGDPHPGNIF----AMRDGRIAYVDFGNVAELSQQNKQILIDA 421
             GV     Q+     FH D HPGNIF    A    +   VD G V  L+ +++  L   
Sbjct: 270 ERGVEIFFTQVFRDSFFHADMHPGNIFVSTRAPWSPQYIAVDCGIVGSLTDEDQDYLARN 329

Query: 422 VVHAVNEDYAEMANDFTRLGFLAKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFN 481
           ++     DY ++A      G++   T V+    A+  + +    K L D +F  V  +  
Sbjct: 330 LIAFFKRDYRKVAQLHIDSGWVPAETKVNDFEAAIRTVCEPIFEKPLKDISFGQVLLRLF 389

Query: 482 KLVYNYRIRIPERFSLVIRSLLTQEGICFTLKPDFKFLEVAYPYVAK 528
           +    + + I  +  L+ ++LL  EG+   L P+      A P++ +
Sbjct: 390 QTARRFNMEIQPQLVLLQKTLLNIEGLGRQLYPELDLWATAQPFLER 436


>sp|Q9HUB8|UBIB_PSEAE Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
           aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
           LMG 12228) GN=ubiB PE=3 SV=1
          Length = 533

 Score =  197 bits (502), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 128/407 (31%), Positives = 204/407 (50%), Gaps = 7/407 (1%)

Query: 126 WSLGLYWSNLTYDCLVGRDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYM 185
           W L L  + L +  L  R  E+   R  +LR  L +LGP FIK GQ+L+ R D++ +D  
Sbjct: 33  WWLRLLGATLPWRWLPRRKLELT--RGARLRLALQDLGPIFIKFGQILSTRRDLLPDDIA 90

Query: 186 NELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGE 245
           NEL  LQD VP FP ++A   IEE+LG  +E VF++   + +A+AS+ QV+ A L+ +GE
Sbjct: 91  NELAWLQDKVPPFPPELAVKRIEEQLGAKIEQVFARFEREPLASASVAQVHAARLK-SGE 149

Query: 246 DVAIKVQRPGIEPIIYRDLFLFRTLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTL 305
           +V +KV RP +EP+I  D+     LA     +S +    +   +V ++ + +++ELD   
Sbjct: 150 EVVVKVIRPNLEPVIRSDIAWLFILARLAERVSSEARRLHPVEVVSDYEKTIVDELDLLR 209

Query: 306 EARNMEDFLENFKDDPTVKIPRVYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFL 365
           EA N      NF+  P + +P+VY      +VLVME I GI  TD + ++    D     
Sbjct: 210 EAANASQLRRNFEGSPLLYVPQVYWDWCRPKVLVMERIYGIPVTDLETLRDQRTDFKALA 269

Query: 366 TVGVSAALRQLLEFGLFHGDPHPGNIF----AMRDGRIAYVDFGNVAELSQQNKQILIDA 421
             GV     Q+     FH D HPGNIF    A    +   VD G V  L+ +++  L   
Sbjct: 270 ERGVEIFFTQVFRDSFFHADMHPGNIFVSTRAPWSPQYIAVDCGIVGSLTDEDQDYLARN 329

Query: 422 VVHAVNEDYAEMANDFTRLGFLAKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFN 481
           ++     DY ++A      G++   T V+    A+  + +    K L D +F  V  +  
Sbjct: 330 LIAFFKRDYRKVAQLHIDSGWVPAETKVNDFEAAIRTVCEPIFEKPLKDISFGQVLLRLF 389

Query: 482 KLVYNYRIRIPERFSLVIRSLLTQEGICFTLKPDFKFLEVAYPYVAK 528
           +    + + I  +  L+ ++LL  EG+   L P+      A P++ +
Sbjct: 390 QTARRFNMEIQPQLVLLQKTLLNIEGLGRQLYPELDLWATAQPFLER 436


>sp|Q02EV2|UBIB_PSEAB Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
           aeruginosa (strain UCBPP-PA14) GN=ubiB PE=3 SV=1
          Length = 533

 Score =  197 bits (501), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 128/407 (31%), Positives = 204/407 (50%), Gaps = 7/407 (1%)

Query: 126 WSLGLYWSNLTYDCLVGRDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYM 185
           W L L  + L +  L  R  E+   R  +LR  L +LGP FIK GQ+L+ R D++ +D  
Sbjct: 33  WWLRLLGATLPWRWLPRRKLELT--RGARLRLALQDLGPIFIKFGQILSTRRDLLPDDIA 90

Query: 186 NELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGE 245
           NEL  LQD VP FP ++A   IEE+LG  +E VF++   + +A+AS+ QV+ A L+ +GE
Sbjct: 91  NELAWLQDKVPPFPPELAVKRIEEQLGAKIEQVFARFEREPLASASVAQVHAARLK-SGE 149

Query: 246 DVAIKVQRPGIEPIIYRDLFLFRTLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTL 305
           +V +KV RP +EP+I  D+     LA     +S +    +   +V ++ + +++ELD   
Sbjct: 150 EVVVKVIRPNLEPVIRSDIAWLFILARLAERVSSEARRLHPVEVVSDYEKTIVDELDLLR 209

Query: 306 EARNMEDFLENFKDDPTVKIPRVYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFL 365
           EA N      NF+  P + +P+VY      +VLVME I GI  TD + ++    D     
Sbjct: 210 EAANASQLRRNFEGSPLLYVPQVYWDWCRPKVLVMERIYGIPVTDLETLRDQRTDFKALA 269

Query: 366 TVGVSAALRQLLEFGLFHGDPHPGNIF----AMRDGRIAYVDFGNVAELSQQNKQILIDA 421
             GV     Q+     FH D HPGNIF    A    +   VD G V  L+ +++  L   
Sbjct: 270 ERGVEIFFTQVFRDSFFHADMHPGNIFVSTRAPWSPQYIAVDCGIVGSLTDEDQDYLARN 329

Query: 422 VVHAVNEDYAEMANDFTRLGFLAKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFN 481
           ++     DY ++A      G++   T V+    A+  + +    K L D +F  V  +  
Sbjct: 330 LIAFFKRDYRKVAQLHIDSGWVPAETKVNDFEAAIRTVCEPIFEKPLKDISFGQVLLRLF 389

Query: 482 KLVYNYRIRIPERFSLVIRSLLTQEGICFTLKPDFKFLEVAYPYVAK 528
           +    + + I  +  L+ ++LL  EG+   L P+      A P++ +
Sbjct: 390 QTARRFNMEIQPQLVLLQKTLLNIEGLGRQLYPELDLWATAQPFLER 436


>sp|A6VDI8|UBIB_PSEA7 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
           aeruginosa (strain PA7) GN=ubiB PE=3 SV=1
          Length = 533

 Score =  197 bits (500), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 128/407 (31%), Positives = 204/407 (50%), Gaps = 7/407 (1%)

Query: 126 WSLGLYWSNLTYDCLVGRDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYM 185
           W L L  + L +  L  R  E+   R  +LR  L +LGP FIK GQ+L+ R D++ +D  
Sbjct: 33  WWLRLLGAALPWRWLPRRKLELT--RGARLRLALQDLGPIFIKFGQILSTRRDLLPDDIA 90

Query: 186 NELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGE 245
           NEL  LQD VP FP ++A   IEE+LG  +E VF++   + +A+AS+ QV+ A L+ +GE
Sbjct: 91  NELAWLQDKVPPFPPELAVKRIEEQLGAKIEQVFARFEREPLASASVAQVHAARLK-SGE 149

Query: 246 DVAIKVQRPGIEPIIYRDLFLFRTLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTL 305
           +V +KV RP +EP+I  D+     LA     +S +    +   +V ++ + +++ELD   
Sbjct: 150 EVVVKVIRPNLEPVIRSDIAWLFILARLAERVSSEARRLHPVEVVSDYEKTIVDELDLLR 209

Query: 306 EARNMEDFLENFKDDPTVKIPRVYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFL 365
           EA N      NF+  P + +P+VY      +VLVME I GI  TD + ++    D     
Sbjct: 210 EAANASQLRRNFEGSPLLYVPQVYWDWCRPKVLVMERIYGIPVTDLETLRDQRTDFKALA 269

Query: 366 TVGVSAALRQLLEFGLFHGDPHPGNIF----AMRDGRIAYVDFGNVAELSQQNKQILIDA 421
             GV     Q+     FH D HPGNIF    A    +   VD G V  L+ +++  L   
Sbjct: 270 ERGVEIFFTQVFRDSFFHADMHPGNIFVSTRAPWSPQYIAVDCGIVGSLTDEDQDYLARN 329

Query: 422 VVHAVNEDYAEMANDFTRLGFLAKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFN 481
           ++     DY ++A      G++   T V+    A+  + +    K L D +F  V  +  
Sbjct: 330 LIAFFKRDYRKVAQLHIDSGWVPAETKVNDFEAAIRTVCEPIFEKPLKDISFGQVLLRLF 389

Query: 482 KLVYNYRIRIPERFSLVIRSLLTQEGICFTLKPDFKFLEVAYPYVAK 528
           +    + + I  +  L+ ++LL  EG+   L P+      A P++ +
Sbjct: 390 QTARRFNMEIQPQLVLLQKTLLNIEGLGRQLYPELDLWATAQPFLER 436


>sp|C4L962|UBIB_TOLAT Probable ubiquinone biosynthesis protein UbiB OS=Tolumonas auensis
           (strain DSM 9187 / TA4) GN=ubiB PE=3 SV=1
          Length = 543

 Score =  196 bits (498), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 127/400 (31%), Positives = 197/400 (49%), Gaps = 5/400 (1%)

Query: 151 RARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEE 210
           R  +LR+    LGP FIK GQ+L+ R D++  D   EL +LQD VPSF  Q+A   IE+ 
Sbjct: 53  RGARLRHAFEGLGPVFIKFGQMLSTRRDLLPPDLAEELAMLQDRVPSFDGQLAREQIEQA 112

Query: 211 LGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTL 270
           LG+P+EA+F+    Q +A+AS+ QV+ A L+E   ++ IKV RP I+P+I  D+ L R  
Sbjct: 113 LGQPIEALFADFDQQPLASASVAQVHTARLKENNAEIVIKVIRPDIKPVINDDIRLMRLC 172

Query: 271 ASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRVYK 330
           A  +    I         +++E+   LL+EL+   EA N      NF++   + +P VY 
Sbjct: 173 AKIV-AFLIPNNRLRPVEVIEEYRRTLLDELNLMSEAANAIQLRRNFENSSHLYVPLVYS 231

Query: 331 RLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGN 390
                 VLVME I GI  +D  A++  G D+      GV     Q+     FH D HPGN
Sbjct: 232 DYCRESVLVMERIYGIPVSDRAALEANGTDLKLLAERGVEVFFTQVFRDSFFHADMHPGN 291

Query: 391 IFAM----RDGRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLAKG 446
           +F       D +   +D G V  L++Q+K+ L +  +   N DY ++A    + G++   
Sbjct: 292 VFVSYEHPHDPQWIGIDCGIVGTLNRQDKRYLAENFLAFFNRDYRKVAELHVQSGWVPPD 351

Query: 447 TDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLTQE 506
           T V     AL  + +    K LA+ +F  V          + + +  +  L+ ++LL  E
Sbjct: 352 TKVEEFESALRTVLEPIFAKPLAEISFGQVLLNLFNTARRFNMHVQPQLVLLQKTLLYIE 411

Query: 507 GICFTLKPDFKFLEVAYPYVAKRLLTDPNPALRERLIQAK 546
           G+   L P     + A P++   +     P    R I+ K
Sbjct: 412 GLGRHLYPQLDLWQTAKPFLEHWMRQQIGPKAAWRAIKEK 451


>sp|Q8Y275|UBIB_RALSO Probable ubiquinone biosynthesis protein UbiB OS=Ralstonia
           solanacearum (strain GMI1000) GN=ubiB PE=3 SV=1
          Length = 525

 Score =  196 bits (498), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 127/401 (31%), Positives = 197/401 (49%), Gaps = 9/401 (2%)

Query: 135 LTYDCLVGRDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDD 194
           L +   +GR ++  P R  +LR  L  LGP F+K GQVL+ R D++  D  +EL  LQD 
Sbjct: 35  LVWVLTLGR-RQTRP-RGERLRLALEQLGPIFVKFGQVLSTRRDLLPPDVADELAKLQDR 92

Query: 195 VPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLR---ETGEDVAIKV 251
           VP F  ++A  I+E  LG+PL A+F +     +A+AS+ QV+ ATLR   + G +VA+KV
Sbjct: 93  VPPFDPKIAAAIVERSLGKPLSALFHRFDHHPVASASIAQVHFATLRGGPDDGREVAVKV 152

Query: 252 QRPGIEPIIYRDLFLFRTLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNME 311
            RPG+ P+I  DL L R +A+++  +           +V EF + L +ELD   EA N  
Sbjct: 153 LRPGMLPVIDSDLALMRDVATWMEKLWADGKRLKPREVVAEFDKYLHDELDLMREAANAS 212

Query: 312 DFLENFKDDPTVKIPRVYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSA 371
               NF     + +P V+     S V VME + G+R +    ++ AG+D       GV  
Sbjct: 213 QLRRNFAKSELLLVPEVFWDWCTSEVFVMERMHGVRVSHADELRAAGVDTHKLARDGVEI 272

Query: 372 ALRQLLEFGLFHGDPHPGNIFAMRD----GRIAYVDFGNVAELSQQNKQILIDAVVHAVN 427
              Q+   G FH D HPGNI         GR   +DFG V  LS+ +K  L    +    
Sbjct: 273 FFTQVFRDGFFHADMHPGNILVSVAPESLGRYIALDFGIVGALSEFDKNYLAQNFLAFFQ 332

Query: 428 EDYAEMANDFTRLGFLAKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNY 487
            DY  +A      G+  + T V  +  A+ A  +    + L + +   V  +  +    +
Sbjct: 333 RDYHRVALLHVESGWAPEETRVEELEGAIRACCEPYFDRPLGEISLGLVLMRLFQTSRRF 392

Query: 488 RIRIPERFSLVIRSLLTQEGICFTLKPDFKFLEVAYPYVAK 528
            + +  +  L+ ++LL  EG+   L PD    + A P++ +
Sbjct: 393 NVEVQPQLVLLQKTLLNVEGLGRQLDPDLDLWKTAKPFLER 433


>sp|B9ME24|UBIB_ACIET Probable ubiquinone biosynthesis protein UbiB OS=Acidovorax ebreus
           (strain TPSY) GN=ubiB PE=3 SV=1
          Length = 521

 Score =  195 bits (495), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 139/465 (29%), Positives = 215/465 (46%), Gaps = 24/465 (5%)

Query: 115 ISLMSRGVEIVWSLGLY-------------WSNLTYDCLVGRDKEVVPDRARQLRNLLCN 161
           +S  +RG+ IVW +  Y             W       +    K   P R ++LR  L +
Sbjct: 1   MSRFARGITIVWVVLRYGLDELVLSTFRQPWLRAVTRVITFGRKLDAP-RGQRLREALES 59

Query: 162 LGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSK 221
           LGP F+K GQVL+ R D++  D  +EL +LQD VP F   VA   IE    RP+  VF  
Sbjct: 60  LGPIFVKFGQVLSTRRDLMPPDIADELALLQDRVPPFDPDVAIATIERAFRRPIGEVFVS 119

Query: 222 ISSQTIAAASLGQVYRATLRE---TGEDVAIKVQRPGIEPIIYRDLFLFRTLASFLNGIS 278
              Q +A+AS+ QV+ A +R+      +VA+KV RPG+ P+I +DL L R +A ++  +S
Sbjct: 120 FDRQPVASASIAQVHFAVIRDRQGHAREVAVKVLRPGMLPVIDKDLALMRMMAGWVESLS 179

Query: 279 IQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRVYKRLSGSRVL 338
                     +V EF   L +ELD   EA N      N +    V IP V+     + VL
Sbjct: 180 ADGKRLKPREVVAEFDNYLHDELDLVREAANAAQLRRNMQGLDLVLIPEVFWDFCHAEVL 239

Query: 339 VMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRD-- 396
           VME + G+     + ++ AG+D+      GV+    Q+   G FH D HPGNI       
Sbjct: 240 VMERMKGVPINQVERLRSAGVDIPKLARDGVTIFFTQVFRDGFFHADMHPGNIQVSLAPE 299

Query: 397 --GRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLAKGTDVSPIIP 454
             GR   +DFG V  L++ +K+ L          DY  +A      G++   T V+ +  
Sbjct: 300 TFGRYISLDFGIVGTLTEFDKEYLAQNFTAFFRRDYKRVAELHIESGWVPAHTRVNELEA 359

Query: 455 ALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLTQEGICFTLKP 514
           A+  + +    + L + +   V  +  +    +++ I  +  L+ ++LL  EG+   L P
Sbjct: 360 AIRTVCEPYFDRPLKEISLGMVLLRLFQTSRRFQVEIQPQLVLLQKTLLNIEGLGRQLDP 419

Query: 515 DFKFLEVAYPYVAKRLLTDPNPALRERLIQAKFKELASSKKIGPN 559
           D      A P++ K +L    P   +RL +    E     KI P+
Sbjct: 420 DLDLWSTAKPFLEKWMLDQLGP---QRLWRELRAEAPHYAKILPD 461


>sp|A1W4D7|UBIB_ACISJ Probable ubiquinone biosynthesis protein UbiB OS=Acidovorax sp.
           (strain JS42) GN=ubiB PE=3 SV=1
          Length = 521

 Score =  194 bits (493), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 139/465 (29%), Positives = 214/465 (46%), Gaps = 24/465 (5%)

Query: 115 ISLMSRGVEIVWSLGLY-------------WSNLTYDCLVGRDKEVVPDRARQLRNLLCN 161
           +S  +RG+ IVW +  Y             W       +    K   P R ++LR  L +
Sbjct: 1   MSRFARGITIVWVVLRYGLDELVLSTFRQPWLRAVTRVITFGRKLDAP-RGQRLREALES 59

Query: 162 LGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSK 221
           LGP F+K GQVL+ R D++  D  +EL +LQD VP F   VA   IE    RP+  VF  
Sbjct: 60  LGPIFVKFGQVLSTRRDLMPPDIADELALLQDRVPPFDPDVAIATIERAFRRPIGEVFVS 119

Query: 222 ISSQTIAAASLGQVYRATLRE---TGEDVAIKVQRPGIEPIIYRDLFLFRTLASFLNGIS 278
              Q +A+AS+ QV+ A +R+      +VA+KV RPG+ P+I +DL L R +A ++  +S
Sbjct: 120 FDRQPVASASIAQVHFAVIRDRQGHAREVAVKVLRPGMLPVIDKDLALMRMMAGWVESLS 179

Query: 279 IQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRVYKRLSGSRVL 338
                     +V EF   L +ELD   EA N      N +    V IP V+     + VL
Sbjct: 180 ADGKRLKPREVVAEFDNYLHDELDLVREAANAAQLRRNMQGLDLVLIPEVFWDFCHAEVL 239

Query: 339 VMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRD-- 396
           VME + G+       ++ AG+D+      GV+    Q+   G FH D HPGNI       
Sbjct: 240 VMERMKGVPINQVDRLRSAGVDIPKLARDGVTIFFTQVFRDGFFHADMHPGNIQVSLAPE 299

Query: 397 --GRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLAKGTDVSPIIP 454
             GR   +DFG V  L++ +K+ L          DY  +A      G++   T V+ +  
Sbjct: 300 TFGRYISLDFGIVGTLTEFDKEYLAQNFTAFFRRDYKRVAELHIESGWVPAHTRVNELEA 359

Query: 455 ALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLTQEGICFTLKP 514
           A+  + +    + L + +   V  +  +    +++ I  +  L+ ++LL  EG+   L P
Sbjct: 360 AIRTVCEPYFDRPLKEISLGMVLLRLFQTSRRFQVEIQPQLVLLQKTLLNIEGLGRQLDP 419

Query: 515 DFKFLEVAYPYVAKRLLTDPNPALRERLIQAKFKELASSKKIGPN 559
           D      A P++ K +L    P   +RL +    E     KI P+
Sbjct: 420 DLDLWSTAKPFLEKWMLDQLGP---QRLWRELRAEAPHYAKILPD 461


>sp|P73577|Y889_SYNY3 Uncharacterized protein slr0889 OS=Synechocystis sp. (strain PCC
           6803 / Kazusa) GN=slr0889 PE=3 SV=1
          Length = 408

 Score =  192 bits (488), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 133/419 (31%), Positives = 211/419 (50%), Gaps = 41/419 (9%)

Query: 109 ESRGAVIS-LMSRGVEIVWSLGLYWSNLTYDCLVGRDKEVVPDRARQLRNLLCNLGPSFI 167
           + RG +I  L+S G    W    Y + L     VG  +   P+    L  +L  LGP +I
Sbjct: 9   DRRGEIIKVLLSNG----WD---YMNGLLTLGKVGEPQIPTPEV---LTKILVELGPFYI 58

Query: 168 KAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTI 227
           K GQ+L+ RPD++   Y+N L  LQ +VP  P     ++++ E  +PL   F +I S+ I
Sbjct: 59  KLGQLLSTRPDLLPPRYINALTALQSNVPPLPWSAIEDLLQREFPQPLGETFQEIESEPI 118

Query: 228 AAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLASFLNGISIQKLGCNAE 287
           AA S+GQ++RA L ++GE VAIKV+RPGI+ I+ +D  L + +A  L   ++ + G N +
Sbjct: 119 AAGSIGQIHRAVL-QSGETVAIKVKRPGIDVIVEQDSLLIKDVAELL---ALTEFGQNYD 174

Query: 288 LI--VDEFGEKLLEELDYTLEARNMEDFLENFKD----DPT-VKIPRVYKRLSGSRVLVM 340
           ++   DEF + +  EL++  EA    +   N       DP  + IP+VY  L+  + LV+
Sbjct: 175 IVKLADEFTQTVKAELNFDTEAAYTNNLRTNLAKTTWFDPNQLVIPKVYWELTNQKFLVL 234

Query: 341 EWIDGI-----RCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGNIFAMR 395
           EW+DG+       T P + K          T+   A  +QL   G FH DPHPGNIF + 
Sbjct: 235 EWLDGVPILTADLTQPPSDKDIAEKKKEITTLLFRAFFQQLYVDGFFHADPHPGNIFYLA 294

Query: 396 DGRIAYVDFGNVAELSQQNKQILIDAVVHAVNED-------YAEMANDFTRLGFLAKGTD 448
           DGR+A +D G V  L  + +Q+L + ++  V+ D         E++    R+ F     D
Sbjct: 295 DGRLALIDCGMVGRLDPRTRQLLTEMLLAIVDLDAKRCAQLTVELSESVGRVNFQRLEVD 354

Query: 449 VSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLTQEG 507
                   E + +      L++FNF  V  +F ++    ++++P    L  + L   EG
Sbjct: 355 Y-------ERMLRKYYDLSLSEFNFSEVVYEFLRIARVNKLKVPACLGLYAKCLANLEG 406


>sp|Q3KJC7|UBIB_PSEPF Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
           fluorescens (strain Pf0-1) GN=ubiB PE=3 SV=1
          Length = 534

 Score =  191 bits (485), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 124/404 (30%), Positives = 203/404 (50%), Gaps = 5/404 (1%)

Query: 151 RARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEE 210
           R  +LR  L +LGP FIK GQ+L+ R D++ ED  +EL  LQD VP F +Q++  +IEE+
Sbjct: 55  RGARLRLALQDLGPIFIKFGQILSTRRDLLPEDIADELMRLQDRVPPFDSQLSVKLIEEQ 114

Query: 211 LGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTL 270
           LG+ +  VFS+   + +A+AS+ QV+ A L+ TGE+V +KV RPG++PII +DL     L
Sbjct: 115 LGKKISEVFSRFDVEPLASASVAQVHAAQLK-TGEEVVVKVIRPGLKPIIAQDLAWLFIL 173

Query: 271 ASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRVYK 330
           A     +S      +   +V ++ + + +ELD   EA N      NF+  P + +P+VY 
Sbjct: 174 ARAAEKVSADARLLHPVDVVSDYEKTIYDELDLLREAANASQLKRNFEGSPLLYVPQVYW 233

Query: 331 RLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGN 390
                +VLVME I GI+ TD   +     D+      GV     Q+     FH D HPGN
Sbjct: 234 DWCRPKVLVMERIYGIQVTDLATLADQRTDMKMLAERGVEIFFTQVFRDSFFHADMHPGN 293

Query: 391 IFAMR----DGRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLAKG 446
           IF         +   +D G V  L+ +++  L   +      DY  +A      G++   
Sbjct: 294 IFVSTVNPWSPQYIAIDCGIVGSLTPEDQDYLARNLFAFFKRDYRRVAQLHIDSGWVPAE 353

Query: 447 TDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLTQE 506
           T ++    A+  + +    K L D +F  V  +  +    + + +  +  L+ ++LL  E
Sbjct: 354 TKLNEFEAAIRTVCEPIFEKPLKDISFGQVLMRLFQTARRFNMEVQPQLVLLQKTLLNIE 413

Query: 507 GICFTLKPDFKFLEVAYPYVAKRLLTDPNPALRERLIQAKFKEL 550
           G+   L PD      A P++ + +    +P      +Q++F++L
Sbjct: 414 GLGRQLYPDLDLWNTAQPFLERWMRERVSPKALLGNVQSQFEQL 457


>sp|B1XWR5|UBIB_LEPCP Probable ubiquinone biosynthesis protein UbiB OS=Leptothrix
           cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=ubiB
           PE=3 SV=1
          Length = 522

 Score =  190 bits (483), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 122/382 (31%), Positives = 188/382 (49%), Gaps = 5/382 (1%)

Query: 151 RARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEE 210
           R  +LR  L  LGP F+K GQVL+ R D++  D  NEL  LQD VP FP+ V+   + + 
Sbjct: 49  RGVRLRMALERLGPIFVKFGQVLSTRRDLIPHDIANELAKLQDRVPPFPSDVSRAAVVQS 108

Query: 211 LGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTL 270
           LGRP+E VF+   +  +A+AS+ QV+   L + G +VA+KV RP +  II  DL L R  
Sbjct: 109 LGRPIEEVFASFDADPVASASIAQVHFGVLHD-GREVAVKVLRPNVLNIIEADLALLRVA 167

Query: 271 ASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRVYK 330
           A++L  +S          +V EF   L +ELD   EA N      N      + +P +  
Sbjct: 168 AAWLERLSPDGRRLRPREVVAEFDNYLHDELDLGREAANAAQLRRNMGGLDLIMLPEMIW 227

Query: 331 RLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGN 390
            LS + VLVME + G+  +  + ++ AGID+      GV+    Q+   G FH D HPGN
Sbjct: 228 DLSSAEVLVMERMHGVPISQIETLRAAGIDIPKLARDGVTIFFTQVFRDGFFHADMHPGN 287

Query: 391 IFAMRD----GRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLAKG 446
           I         GR   +DFG V  L  ++K+ L    +     DY  +A      G++   
Sbjct: 288 IMVSTAPATFGRYIALDFGIVGTLDSRDKEYLAQNFLAFFRRDYRRVAELHIESGWVPAS 347

Query: 447 TDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLTQE 506
           T V  +  A+ A+ +    + L D +   V  +  +    + + I  +  L+ ++LL  E
Sbjct: 348 TRVDELEGAVRAVCEPHFDRPLKDISLGQVLLRLFQTSRRFNVEIQPQLVLLQKTLLNVE 407

Query: 507 GICFTLKPDFKFLEVAYPYVAK 528
           G+   L P+    + A P++ +
Sbjct: 408 GLGRQLDPELDLWQTAKPFLER 429


>sp|B0TJ18|UBIB_SHEHH Probable ubiquinone biosynthesis protein UbiB OS=Shewanella
           halifaxensis (strain HAW-EB4) GN=ubiB PE=3 SV=1
          Length = 549

 Score =  189 bits (480), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 121/404 (29%), Positives = 207/404 (51%), Gaps = 16/404 (3%)

Query: 154 QLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGR 213
           +L+  +  LGP +IK GQ+L+ R D++ +++  EL +LQD VP F + +A   IE EL  
Sbjct: 56  RLKLAMQELGPVYIKFGQMLSTRRDLLSDEWAEELAMLQDRVPPFDSAIARASIETELNA 115

Query: 214 PLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLASF 273
           P+E+ F+      +A+AS+ QV+ ATL+  G  V +K+ RP +E  ++ DL L    A F
Sbjct: 116 PIESYFNDFDDIPLASASISQVHTATLKSNGAAVVLKILRPDVEQKVHADLLLMSQAADF 175

Query: 274 LNGISIQKLGCNAEL----IVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRVY 329
           L  +    LG N  L    +V+++   +  EL+  LEA N      NF D   + IP +Y
Sbjct: 176 LETL----LGTNNRLRPAEVVEDYRTTIEGELNLKLEALNAIKLRNNFIDSNALYIPYMY 231

Query: 330 KRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPG 389
           + L  +R++VME IDGI  +D  A++  G ++      GV     Q+     FH D HPG
Sbjct: 232 EELCFTRLIVMERIDGIPVSDKVALEAQGTNLKLLAERGVELFFTQVFRDNFFHADMHPG 291

Query: 390 NIFAMR----DGRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLAK 445
           NIF  R    D     +D G +  L++++K+ L +  +   N DY  +A  +   G+++ 
Sbjct: 292 NIFVSREHPNDPLYIGLDCGIMGTLTEEDKRYLAENFLAFFNRDYRRIAQLYIESGWVSP 351

Query: 446 GTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLTQ 505
            TDV+    A++ + +    K L + +F  V  +  +    + + +  +  L+ ++LL  
Sbjct: 352 DTDVAAFEQAVKVVCEPMFNKPLDEISFGHVLLELFRTARRFDMVVQPQLVLLEKTLLYI 411

Query: 506 EGICFTLKPDFKFLEVAYPYVAKRLLTDPNPALRERLIQAKFKE 549
           EG+   L P     + A P++ + +     P    +++ AK K+
Sbjct: 412 EGLGRQLYPQLDLWQTAKPFLEQWMAEQVGP----KVMAAKVKQ 451


>sp|A1SAK0|UBIB_SHEAM Probable ubiquinone biosynthesis protein UbiB OS=Shewanella
           amazonensis (strain ATCC BAA-1098 / SB2B) GN=ubiB PE=3
           SV=1
          Length = 549

 Score =  189 bits (479), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 116/389 (29%), Positives = 201/389 (51%), Gaps = 4/389 (1%)

Query: 152 ARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEEL 211
             +L+  +  LGP +IK GQ+L+ R D++ +++  EL +LQD VP+F + +A   IE EL
Sbjct: 54  GERLKLAMQELGPVYIKFGQMLSTRRDLLSDEWAQELSMLQDRVPAFDSALAREAIEAEL 113

Query: 212 GRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLA 271
             P++++F       +A+AS+ QV+ ATL+  G+ V +KV RP +E  I  DL L   +A
Sbjct: 114 KAPIDSLFDDFDDTPLASASISQVHTATLKSNGQQVVLKVLRPNVEANIKADLELMLQVA 173

Query: 272 SFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRVYKR 331
           +++N +  +        +V+++   +L EL+  LEA N      NF D   + IP VY+ 
Sbjct: 174 TWVNRLLGEGNRLRPVEVVEDYQNTILGELNLKLEALNATKLRNNFLDSDALYIPYVYEE 233

Query: 332 LSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGNI 391
           L   R++VME IDGI  +D +A+   G ++      GV     Q+     FH D HPGNI
Sbjct: 234 LCHPRLMVMERIDGIPVSDIEALNAQGTNLKLLAERGVELFFTQVFRDNFFHADMHPGNI 293

Query: 392 FAMRDG--RIAYV--DFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLAKGT 447
           F  R+      Y+  D G +  L++++K+ L +  +   N DY  +A  +   G+++  T
Sbjct: 294 FISREHPENPFYIGLDCGIMGSLNEEDKRYLAENFLAFFNRDYHRIAQLYVESGWVSADT 353

Query: 448 DVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLTQEG 507
           D+     A++ + +    K L + +F  V  +  +    + I +  +  L+ ++LL  EG
Sbjct: 354 DILAFEQAVKLVCEPMFNKPLNEISFGHVLLELFRTARRFDIVVQPQLVLLEKTLLYIEG 413

Query: 508 ICFTLKPDFKFLEVAYPYVAKRLLTDPNP 536
           +   L P     + A P++ + +     P
Sbjct: 414 LGRQLYPQLDLWQTAKPFLERWMAEQVGP 442


>sp|A1TTA2|UBIB_ACIAC Probable ubiquinone biosynthesis protein UbiB OS=Acidovorax
           citrulli (strain AAC00-1) GN=ubiB PE=3 SV=1
          Length = 522

 Score =  189 bits (479), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 134/458 (29%), Positives = 212/458 (46%), Gaps = 21/458 (4%)

Query: 115 ISLMSRGVEIVWSLGLY-------------WSNLTYDCLVGRDKEVVPDRARQLRNLLCN 161
           +S + RG  IVW +  Y             W  L    +V   +++   R ++LR  L  
Sbjct: 1   MSRLFRGATIVWVVLRYGLDELVLTSFQKPWLRLLAR-IVSFGRKLDAPRGQRLREALER 59

Query: 162 LGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSK 221
           LGP F+K GQVL+ R D++  D  NEL +LQD VP F   VA   IE    RP+  VF  
Sbjct: 60  LGPIFVKFGQVLSTRRDLLPPDIANELALLQDRVPPFDPDVAVATIERAFRRPVGEVFVS 119

Query: 222 ISSQTIAAASLGQVYRATLRE---TGEDVAIKVQRPGIEPIIYRDLFLFRTLASFLNGIS 278
                +A+AS+ QV+ A +R+      +VA+KV RPG+ P+I  DL L R +A ++  +S
Sbjct: 120 FERVPVASASIAQVHFAIVRDRHGVEREVAVKVLRPGMLPVIDNDLGLMRAMAGWVESLS 179

Query: 279 IQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRVYKRLSGSRVL 338
                     +V EF   L +ELD   EA N      N +    V+IP +        VL
Sbjct: 180 ADGKRLKPRQVVAEFDNYLHDELDLIREAANAAQLRRNMERLGLVRIPEILWDFCHPEVL 239

Query: 339 VMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRD-- 396
           VME + G+  +  + ++ AG+D+      GV+    Q+   G FH D HPGNI    +  
Sbjct: 240 VMERMKGVPISQIERLRAAGVDIRQLARDGVTIFFTQVFRDGFFHADMHPGNIQVSLEPG 299

Query: 397 --GRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLAKGTDVSPIIP 454
             GR   +DFG V  L++ +K+ L          DY  +A      G++   T ++ +  
Sbjct: 300 SFGRYISLDFGIVGSLTEFDKEYLAQNFTAFFRRDYKRVAELHVESGWVPADTRINELES 359

Query: 455 ALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLTQEGICFTLKP 514
           A+ A+ +    + L + +   V  +  +    + + I  +  L+ ++LL  EG+   L P
Sbjct: 360 AIRAVCEPYFDRPLKEISLGMVLMRLFQTSRRFHVEIQPQLVLLQKTLLNIEGLGRQLDP 419

Query: 515 DFKFLEVAYPYVAKRLLTDPNPALRERLIQAKFKELAS 552
           +      A P++ K +L    P    R ++A+    A 
Sbjct: 420 ELDLWSTAKPFLEKWMLDQMGPQRLWREVKAESPHFAK 457


>sp|B8CI04|UBIB_SHEPW Probable ubiquinone biosynthesis protein UbiB OS=Shewanella
           piezotolerans (strain WP3 / JCM 13877) GN=ubiB PE=3 SV=1
          Length = 549

 Score =  188 bits (478), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 117/391 (29%), Positives = 198/391 (50%), Gaps = 12/391 (3%)

Query: 154 QLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGR 213
           +L+  +  LGP +IK GQ+L+ R D++ +++  EL +LQD VP F + +A   IE+EL  
Sbjct: 56  RLKLAMQELGPVYIKFGQMLSTRRDLLSDEWAEELAMLQDRVPPFDSAIARESIEQELNA 115

Query: 214 PLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLASF 273
           P+E  F       +A+AS+ QV+ ATL+  G  V +KV RP +E  ++ D+ L    A+F
Sbjct: 116 PIETYFDDFEDTPLASASISQVHTATLKSNGAKVVLKVLRPDVEQKVHADIQLMSQAANF 175

Query: 274 LNGISIQKLGCNAEL----IVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRVY 329
           L  +    LG N  L    +V+++   +  EL+  LEA N      NF D   + IP +Y
Sbjct: 176 LESL----LGANNRLRPAEVVEDYRTTIEGELNLKLEALNAIKLRNNFLDSNALYIPYMY 231

Query: 330 KRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPG 389
           + L  +R++VME IDG+  +D  A++  G ++      GV     Q+     FH D HPG
Sbjct: 232 EELCFTRLIVMERIDGVPVSDKAALEAQGTNLKLLAERGVELFFTQVFRDNFFHADMHPG 291

Query: 390 NIFAMR----DGRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLAK 445
           NIF  R    D     +D G +  L+ ++K+ L +  +   N DY  +A  +   G+++ 
Sbjct: 292 NIFVSREHPNDPFYIGLDCGIMGTLTDEDKRYLAENFLAFFNRDYRRIAQLYIESGWVSA 351

Query: 446 GTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLTQ 505
            TD+S    A++ + +    K L + +F  V  +  +    + + +  +  L+ ++LL  
Sbjct: 352 DTDISAFEQAVKVVCEPMFNKPLDEISFGHVLLELFRTARRFDMVVQPQLVLLEKTLLYI 411

Query: 506 EGICFTLKPDFKFLEVAYPYVAKRLLTDPNP 536
           EG+   L P     + A P++   +     P
Sbjct: 412 EGLGRQLYPQLDLWQTAKPFLEDWMAEQVGP 442


>sp|A9BP42|UBIB_DELAS Probable ubiquinone biosynthesis protein UbiB OS=Delftia
           acidovorans (strain DSM 14801 / SPH-1) GN=ubiB PE=3 SV=1
          Length = 521

 Score =  188 bits (478), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 124/416 (29%), Positives = 200/416 (48%), Gaps = 10/416 (2%)

Query: 151 RARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEE 210
           R ++LR  L  LGP F+K GQVL+ R D++  D   EL  LQD VP F +Q+A + IE  
Sbjct: 49  RGQRLREALEELGPIFVKFGQVLSTRSDLMPPDVAEELARLQDRVPPFDSQIAVDTIERA 108

Query: 211 LGRPLEAVFSKISSQTIAAASLGQVYRATLRE---TGEDVAIKVQRPGIEPIIYRDLFLF 267
             + L+ +F     + +A+AS+ QV+ A + +      DVA+KV RPG++ +I +DL L 
Sbjct: 109 FRKKLDQIFVSFEREPVASASIAQVHFAVISDRNGVQRDVAVKVLRPGMKTVIDKDLALM 168

Query: 268 RTLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPR 327
             +A ++  +S          +V EF   L +ELD   EA N      N +    V IP 
Sbjct: 169 HMMARWVERLSADGKRLKPRQVVAEFDNYLHDELDLIREASNAAQLRRNMEGLDLVLIPE 228

Query: 328 VYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPH 387
           VY     S V+VM+ + G+  +  + ++ AG+D+      GV+    Q+   G FH D H
Sbjct: 229 VYWDFCRSDVMVMQRMTGVPISQVERLREAGVDIPKLARDGVTIFFTQVFRDGFFHADMH 288

Query: 388 PGNIFAMRD----GRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFL 443
           PGNI    +    GR   +DFG V  L++ +K+ L          DY  +A      G++
Sbjct: 289 PGNIMVSLEPETFGRYISLDFGIVGTLTEYDKEYLAQNFTAFFRRDYKRVAELHIESGWV 348

Query: 444 AKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLL 503
              T V  +  A+ A+ +    + LA+ +   V  +  +    +++ I  +  L+ ++LL
Sbjct: 349 PPSTRVDELEAAIRAVCEPYFDRPLAEISLGMVLMRLFQTSRRFQVEIQPQLVLLQKTLL 408

Query: 504 TQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNPALRERLIQAKFKELASSKKIGPN 559
             EG+   L P+      A P++ K +L    P   +RL +    E     K+ P 
Sbjct: 409 NIEGLGRQLDPNLDLWSTAKPFLEKWMLDQMGP---QRLWRELLAEAPRYAKLIPE 461


>sp|B1KR05|UBIB_SHEWM Probable ubiquinone biosynthesis protein UbiB OS=Shewanella woodyi
           (strain ATCC 51908 / MS32) GN=ubiB PE=3 SV=1
          Length = 549

 Score =  188 bits (477), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 120/408 (29%), Positives = 207/408 (50%), Gaps = 12/408 (2%)

Query: 152 ARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEEL 211
             +L+ ++  LGP +IK GQ+L+ R D++ +++  EL +LQD VP F + +A  +IE EL
Sbjct: 54  GERLKLVMQELGPVYIKFGQMLSTRRDLLDDEWAEELAMLQDRVPPFDSSIAREMIELEL 113

Query: 212 GRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLA 271
           G  ++  F    +  +A+AS+ QV+ ATL+  G+ V +KV RP +E  +  DL L    A
Sbjct: 114 GTSIDTYFDDFDNTPLASASISQVHTATLKSNGKAVVLKVLRPNVEAQVDADLHLMSQAA 173

Query: 272 SFLNGISIQKLGCNAEL----IVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPR 327
           +FL  +    LG    L    +V+++   +  EL+  LEA N      NF D  ++ IP 
Sbjct: 174 NFLETV----LGHGNRLRPAEVVEDYRTTIEGELNLKLEALNAVKLRNNFLDSGSLYIPY 229

Query: 328 VYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPH 387
           +Y+ L  +R++VME I+GI  +D  A+K  G ++      GV     Q+     FH D H
Sbjct: 230 MYEELCFTRLIVMERIEGIPVSDMAALKAQGTNLKVLAERGVELFFTQVFRDNFFHADMH 289

Query: 388 PGNIFAMR----DGRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFL 443
           PGNIF  R    D     +D G +  L++++K+ L +  +   N DY  +A  +   G++
Sbjct: 290 PGNIFVSREHPEDPYYIGLDCGIMGTLTEEDKRYLAENFLAFFNRDYHRIAQLYIESGWV 349

Query: 444 AKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLL 503
           +  TD++    A++ + +    K L + +F  V  +  +    + + +  +  L+ ++LL
Sbjct: 350 SPDTDIAAFEQAVKVVCEPMFNKPLDEISFGHVLLELFRTARRFDMVVQPQLVLLEKTLL 409

Query: 504 TQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNPALRERLIQAKFKELA 551
             EG+   L P     + A P++ K +     P      I+ +F   A
Sbjct: 410 YIEGLGRQLYPQLDLWQTAKPFLEKWMSEQVGPKGMASKIKKEFPYWA 457


>sp|Q0HE99|UBIB_SHESM Probable ubiquinone biosynthesis protein UbiB OS=Shewanella sp.
           (strain MR-4) GN=ubiB PE=3 SV=1
          Length = 549

 Score =  187 bits (476), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 205/414 (49%), Gaps = 11/414 (2%)

Query: 143 RDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQV 202
           R+K        +L+  +  LGP +IK GQ+L+ R D++ +++ NEL +LQD VP F   +
Sbjct: 45  RNKHKGKSGGERLKLAMQELGPVYIKLGQMLSTRRDLLSDEWANELAMLQDKVPPFDGAL 104

Query: 203 AFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYR 262
           A   IE EL  P+E+ F   +   +A+AS+ QV+ ATL+  G+ V +KV RP +E  I  
Sbjct: 105 ARQAIETELKAPIESFFDDFNETPLASASISQVHTATLKSNGKAVVLKVLRPNVEAKIQA 164

Query: 263 DLFLFRTLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPT 322
           DL L    A  ++ +  +        +++++   +L EL+  LEA N      NF D   
Sbjct: 165 DLLLMSQTAKIIDYLLGEGNRLRPSEVIEDYRVTILGELNLKLEALNAIKLRNNFLDSDA 224

Query: 323 VKIPRVYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLF 382
           + IP VY+     R++VME I GI  +D  A+K  G +       GV     Q+     F
Sbjct: 225 LYIPYVYEEFCYPRLMVMERIYGIPVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFF 284

Query: 383 HGDPHPGNIFAMRDG----RIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFT 438
           H D HPGNIF  RD         +D G +  LS+ +K+ L +  +   N DY  +A  + 
Sbjct: 285 HADMHPGNIFISRDHPENPYYIGLDCGIMGTLSEVDKRYLAENFLAFFNRDYHRIAQLYI 344

Query: 439 RLGFLAKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLV 498
             G++++ TD+     A++ + +    K L + +F  V  +  +   ++ I +  +  L+
Sbjct: 345 ESGWVSEKTDLQAFEQAIKVVCEPMFNKPLDEISFGHVLLELFRTARHFDIVVQPQLVLL 404

Query: 499 IRSLLTQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNPALRERLIQAKFKELAS 552
            ++LL  EG+   L P     + A P++ + +     P       +A FK++++
Sbjct: 405 EKTLLYIEGLGRQLYPQLDLWQTAKPFLEQWMAEQVGP-------KAMFKKVST 451


>sp|Q0HZP9|UBIB_SHESR Probable ubiquinone biosynthesis protein UbiB OS=Shewanella sp.
           (strain MR-7) GN=ubiB PE=3 SV=1
          Length = 549

 Score =  187 bits (475), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 205/414 (49%), Gaps = 11/414 (2%)

Query: 143 RDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQV 202
           R+K        +L+  +  LGP +IK GQ+L+ R D++ +++ NEL +LQD VP F   +
Sbjct: 45  RNKHKGKSGGERLKLAMQELGPVYIKLGQMLSTRRDLLSDEWANELAMLQDKVPPFDGAL 104

Query: 203 AFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYR 262
           A   IE EL  P+E+ F   +   +A+AS+ QV+ ATL+  G+ V +KV RP +E  I  
Sbjct: 105 ARQAIEAELKAPIESFFDDFNETPLASASISQVHTATLKSNGKAVVLKVLRPNVEAKIQA 164

Query: 263 DLFLFRTLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPT 322
           DL L    A  ++ +  +        +++++   +L EL+  LEA N      NF D   
Sbjct: 165 DLLLMSQTAKVIDYLLGEGNRLRPSEVIEDYRVTILGELNLKLEALNAIKLRNNFLDSDA 224

Query: 323 VKIPRVYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLF 382
           + IP VY+     R++VME I GI  +D  A+K  G +       GV     Q+     F
Sbjct: 225 LYIPYVYEEFCYPRLMVMERIYGIPVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFF 284

Query: 383 HGDPHPGNIFAMRDG----RIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFT 438
           H D HPGNIF  RD         +D G +  LS+ +K+ L +  +   N DY  +A  + 
Sbjct: 285 HADMHPGNIFISRDHPENPYYIGLDCGIMGTLSEVDKRYLAENFLAFFNRDYHRIAQLYI 344

Query: 439 RLGFLAKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLV 498
             G++++ TD+     A++ + +    K L + +F  V  +  +   ++ I +  +  L+
Sbjct: 345 ESGWVSEKTDLQAFEQAIKVVCEPMFNKPLDEISFGHVLLELFRTARHFDIVVQPQLVLL 404

Query: 499 IRSLLTQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNPALRERLIQAKFKELAS 552
            ++LL  EG+   L P     + A P++ + +     P       +A FK++++
Sbjct: 405 EKTLLYIEGLGRQLYPQLDLWQTAKPFLEQWMAEQVGP-------KAMFKKVST 451


>sp|B2JCV1|UBIB_BURP8 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
           phymatum (strain DSM 17167 / STM815) GN=ubiB PE=3 SV=1
          Length = 527

 Score =  187 bits (475), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 121/382 (31%), Positives = 186/382 (48%), Gaps = 7/382 (1%)

Query: 154 QLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGR 213
           +LR  L +LGP F+K GQVL+ R D++R D   EL  LQD VP F + VA  IIE+ LG 
Sbjct: 51  RLRLALESLGPIFVKFGQVLSTRRDLLRPDIATELAKLQDQVPPFDSAVAIAIIEKSLGA 110

Query: 214 PLEAVFSKISSQTIAAASLGQVYRATLR---ETGEDVAIKVQRPGIEPIIYRDLFLFRTL 270
           P++ +F       +A+AS+ QV+ ATL+     G+ VA+KV RP + P+I  DL L R +
Sbjct: 111 PVDTIFDDFERVPVASASIAQVHFATLKIGQHAGKQVAVKVLRPNMLPVIDSDLALLRDI 170

Query: 271 ASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRVYK 330
           A +   +           +V EF + L +ELD   EA N      NF     + +P +Y 
Sbjct: 171 AVWAERLWADGKRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMYW 230

Query: 331 RLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGN 390
               + VLVME + G+  +    ++ AG+D+      GV     Q+   G FH D HPGN
Sbjct: 231 EYCTANVLVMERMVGVPISQVDTLRVAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPGN 290

Query: 391 IFAMRD----GRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLAKG 446
           I    D    GR   +DFG +  LS  +K  L    +     DY  +A      G++   
Sbjct: 291 IQVSLDPAHFGRYIALDFGIIGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPAT 350

Query: 447 TDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLTQE 506
           T V  +  A+ A+ +    + L D +   V  +       + + I  +  L+ +++L  E
Sbjct: 351 TRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLNVE 410

Query: 507 GICFTLKPDFKFLEVAYPYVAK 528
           G+  +L P+    + A PY+ +
Sbjct: 411 GLGRSLDPELDLWKTAKPYLER 432


>sp|A4XPM5|UBIB_PSEMY Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
           mendocina (strain ymp) GN=ubiB PE=3 SV=1
          Length = 527

 Score =  187 bits (475), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 122/413 (29%), Positives = 202/413 (48%), Gaps = 9/413 (2%)

Query: 151 RARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEE 210
           R  +LR  L +LGP FIK GQ+L+ R D++  D  +EL  LQD VP FP   A  +IE +
Sbjct: 55  RGARLRLALEDLGPIFIKFGQLLSTRRDLLPPDIADELARLQDQVPPFPEDQAIALIERQ 114

Query: 211 LGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTL 270
           LG P+  +F++  SQ +A+AS+ QV+ A L+ +GE+V +KV RPG++P+I +DL     L
Sbjct: 115 LGAPVSQLFARFDSQPLASASVAQVHAAQLK-SGEEVVVKVVRPGLKPVIRQDLAWLFLL 173

Query: 271 ASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRVYK 330
           A      S          +V ++ + + +ELD   EA N      NF+  P + +P+VY 
Sbjct: 174 ARIAERASADARRLRPVEVVSDYEKTIFDELDLLREAANASQLRRNFEGSPLLYVPQVYW 233

Query: 331 RLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGN 390
            L   +VLVME I G+  TD   +     D+      GV     Q+     FH D HPGN
Sbjct: 234 DLCRHQVLVMERIYGVPVTDLATLADQRTDMKLLAERGVEIFFTQVFRDSFFHADMHPGN 293

Query: 391 IFAMRDGRIAY------VDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLA 444
           IF     R  +      +D G +  L+ +++  L   ++     DY ++A      G++ 
Sbjct: 294 IFV--STRTPWSPQYIAIDCGIIGSLTDEDQDYLARNLIAFFKRDYRKVAQLHIDSGWVP 351

Query: 445 KGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLT 504
             T V+    A+  + +    K L D +F  +  +  +    + + +  +  L+ ++LL 
Sbjct: 352 ADTKVNEFEAAIRTVCEPIFEKPLKDISFGQLLLRLFQTARRFNMEVQPQLVLLQKTLLN 411

Query: 505 QEGICFTLKPDFKFLEVAYPYVAKRLLTDPNPALRERLIQAKFKELASSKKIG 557
            EG+   L PD      A P++ + +    +P    R +Q + +++    +I 
Sbjct: 412 IEGLGRQLYPDLDLWSTAQPFLERWMRERVSPLHLLRNLQQQAEQVPHLSQIA 464


>sp|A8H968|UBIB_SHEPA Probable ubiquinone biosynthesis protein UbiB OS=Shewanella
           pealeana (strain ATCC 700345 / ANG-SQ1) GN=ubiB PE=3
           SV=1
          Length = 549

 Score =  187 bits (475), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 118/391 (30%), Positives = 198/391 (50%), Gaps = 12/391 (3%)

Query: 154 QLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGR 213
           +L+  +  LGP +IK GQ+L+ R D++ +++  EL +LQD VP F + +A   IE+EL  
Sbjct: 56  RLKLAMQELGPVYIKFGQMLSTRRDLLSDEWAEELAMLQDRVPPFDSAIARESIEKELNA 115

Query: 214 PLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLASF 273
           P+E  F+      +A+AS+ QV+ ATL+  G  V +KV RP +E  ++ DL L    A F
Sbjct: 116 PIERYFNDFDDTPLASASISQVHTATLKSNGAAVVLKVLRPDVEKKVHADLLLMSQAADF 175

Query: 274 LNGISIQKLGCNAEL----IVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRVY 329
           L  +    LG N  L    +V+++   +  EL+  LEA N      NF D   + IP +Y
Sbjct: 176 LERL----LGANNRLRPAEVVEDYRTTIEGELNLKLEALNAIKLRNNFIDSNALYIPYMY 231

Query: 330 KRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPG 389
           + L  +R++VME IDGI  +D  A++  G ++      GV     Q+     FH D HPG
Sbjct: 232 EELCFTRLIVMERIDGIPVSDKVALEAQGTNLKLLAERGVELFFTQVFRDNFFHADMHPG 291

Query: 390 NIFAMR----DGRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLAK 445
           N+F  R    D     +D G +  L+ ++K+ L +  +   N DY  +A  +   G+++ 
Sbjct: 292 NVFVSREHPNDPFYIGLDCGIMGTLTDEDKRYLAENFLAFFNRDYRRIAQLYIESGWVSA 351

Query: 446 GTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLTQ 505
            TDV     A++ + +    K L + +F  V  +  +    + + +  +  L+ ++LL  
Sbjct: 352 DTDVGAFEQAVKVVCEPMFNKPLDEISFGHVLLELFRTARRFDMVVQPQLVLLEKTLLYI 411

Query: 506 EGICFTLKPDFKFLEVAYPYVAKRLLTDPNP 536
           EG+   L P     + A P++ + +     P
Sbjct: 412 EGLGRQLYPQLDLWQTAKPFLEQWMAEQVGP 442


>sp|A9KYL6|UBIB_SHEB9 Probable ubiquinone biosynthesis protein UbiB OS=Shewanella baltica
           (strain OS195) GN=ubiB PE=3 SV=1
          Length = 549

 Score =  187 bits (474), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 120/414 (28%), Positives = 206/414 (49%), Gaps = 11/414 (2%)

Query: 143 RDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQV 202
           R+K        +L+  +  LGP +IK GQ+L+ R D++ +++ +EL +LQD VP F   +
Sbjct: 45  RNKHKNKPGGERLKLAMQELGPVYIKLGQMLSTRRDLLSDEWASELAMLQDKVPPFDGAL 104

Query: 203 AFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYR 262
           A   IE EL  P+E++F   +   +A+AS+ QV+ ATL+  G+DV +KV RP +E  I  
Sbjct: 105 ARQAIEAELKAPIESLFDDFNETPLASASISQVHTATLKSNGKDVVLKVLRPNVETKIQA 164

Query: 263 DLFLFRTLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPT 322
           DL L    A  +  +  +        +++++   +L EL+  LEA N      NF D   
Sbjct: 165 DLQLMSQTAKLIEYLLGEGNRLRPAEVIEDYRVTILGELNLKLEALNAVKLRNNFLDSDA 224

Query: 323 VKIPRVYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLF 382
           + +P VY+     R++VME I GI  +D  A+K  G +       GV     Q+     F
Sbjct: 225 LYVPYVYEEFCYPRLMVMERIYGISVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFF 284

Query: 383 HGDPHPGNIFAMRDG----RIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFT 438
           H D HPGNIF  RD         +D G +  LS+ +K+ L +  +   N DY  +A  + 
Sbjct: 285 HADMHPGNIFISRDHPENPYYIGLDCGIMGTLSEVDKRYLAENFLAFFNRDYHRIAQLYI 344

Query: 439 RLGFLAKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLV 498
             G++++ TD+     A++ + +    K L + +F  V  +  +   ++ I +  +  L+
Sbjct: 345 ESGWVSEKTDLQAFEQAIKVVCEPMFNKPLDEISFGHVLLELFRTARHFDIVVQPQLVLL 404

Query: 499 IRSLLTQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNPALRERLIQAKFKELAS 552
            ++LL  EG+   L P     + A P++ + +     P       +A FK++++
Sbjct: 405 EKTLLYIEGLGRQLYPQLDLWQTAKPFLEQWMADQVGP-------KAMFKKVST 451


>sp|A6WIE7|UBIB_SHEB8 Probable ubiquinone biosynthesis protein UbiB OS=Shewanella baltica
           (strain OS185) GN=ubiB PE=3 SV=1
          Length = 549

 Score =  187 bits (474), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 120/414 (28%), Positives = 206/414 (49%), Gaps = 11/414 (2%)

Query: 143 RDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQV 202
           R+K        +L+  +  LGP +IK GQ+L+ R D++ +++ +EL +LQD VP F   +
Sbjct: 45  RNKHKNKPGGERLKLAMQELGPVYIKLGQMLSTRRDLLSDEWASELAMLQDKVPPFDGAL 104

Query: 203 AFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYR 262
           A   IE EL  P+E++F   +   +A+AS+ QV+ ATL+  G+DV +KV RP +E  I  
Sbjct: 105 ARQAIEAELKAPIESLFDDFNETPLASASISQVHTATLKSNGKDVVLKVLRPNVETKIQA 164

Query: 263 DLFLFRTLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPT 322
           DL L    A  +  +  +        +++++   +L EL+  LEA N      NF D   
Sbjct: 165 DLQLMSQTAKLIEYLLGEGNRLRPAEVIEDYRVTILGELNLKLEALNAVKLRNNFLDSDA 224

Query: 323 VKIPRVYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLF 382
           + +P VY+     R++VME I GI  +D  A+K  G +       GV     Q+     F
Sbjct: 225 LYVPYVYEEFCYPRLMVMERIYGISVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFF 284

Query: 383 HGDPHPGNIFAMRDG----RIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFT 438
           H D HPGNIF  RD         +D G +  LS+ +K+ L +  +   N DY  +A  + 
Sbjct: 285 HADMHPGNIFISRDHPENPYYIGLDCGIMGTLSEVDKRYLAENFLAFFNRDYHRIAQLYI 344

Query: 439 RLGFLAKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLV 498
             G++++ TD+     A++ + +    K L + +F  V  +  +   ++ I +  +  L+
Sbjct: 345 ESGWVSEKTDLQAFEQAIKVVCEPMFNKPLDEISFGHVLLELFRTARHFDIVVQPQLVLL 404

Query: 499 IRSLLTQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNPALRERLIQAKFKELAS 552
            ++LL  EG+   L P     + A P++ + +     P       +A FK++++
Sbjct: 405 EKTLLYIEGLGRQLYPQLDLWQTAKPFLEQWMADQVGP-------KAMFKKVST 451


>sp|C1DHS4|UBIB_AZOVD Probable ubiquinone biosynthesis protein UbiB OS=Azotobacter
           vinelandii (strain DJ / ATCC BAA-1303) GN=ubiB PE=3 SV=1
          Length = 537

 Score =  186 bits (473), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 121/404 (29%), Positives = 202/404 (50%), Gaps = 5/404 (1%)

Query: 151 RARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEE 210
           RA +LR  L +LGP FIK GQ+L+ R D++ ED  +EL  LQD VP F  Q +  +IEE+
Sbjct: 56  RAVRLRLALQDLGPIFIKFGQILSTRRDLLPEDIADELTWLQDRVPPFNPQQSVALIEEQ 115

Query: 211 LGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTL 270
           LG  ++  F++  S+ +A+AS+ QV+ A L+ TGE+V +KV RPG++ +I +DL      
Sbjct: 116 LGARVDEAFARFDSEPLASASVAQVHAAQLK-TGEEVVVKVVRPGLKAVIRQDLAWLYLF 174

Query: 271 ASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRVYK 330
           A      S +    +   +V ++ + + +ELD   EA N      NF+  P + +P++Y 
Sbjct: 175 ARLAERASTEARRLHLVDVVSDYEKTIYDELDLLREAANASQLKRNFEGSPLLYVPQIYW 234

Query: 331 RLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGN 390
                +VLVME I G+  TD  A+   G D+      GV     Q+     FH D HPGN
Sbjct: 235 DWCRPKVLVMERIYGVPVTDLAALVDQGTDLKLLAERGVEIFFTQVFRDSFFHADMHPGN 294

Query: 391 IFAMR----DGRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLAKG 446
           IF       D +   +D G V  L+ Q++  L   ++     DY ++A      G++   
Sbjct: 295 IFVSTRQPWDPQYIAIDCGIVGSLTPQDQDYLARNLLAFFKRDYRKVAQLHIDSGWVPAD 354

Query: 447 TDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLTQE 506
           T V+    A+  + +    K L D +F  +  +  +    + + +  +  L+ ++LL  E
Sbjct: 355 TQVNEFEAAIRTVCEPIFEKPLKDISFGQLLLRLFQTARRFNMEVQPQLVLLQKTLLNIE 414

Query: 507 GICFTLKPDFKFLEVAYPYVAKRLLTDPNPALRERLIQAKFKEL 550
           G+   L P+      A P++ + +    +P      +Q + ++L
Sbjct: 415 GLGRQLYPELDLWTTAKPFLERWMRKRMSPKAMLDNLQGQLEQL 458


>sp|Q4KJL4|UBIB_PSEF5 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
           fluorescens (strain Pf-5 / ATCC BAA-477) GN=ubiB PE=3
           SV=1
          Length = 534

 Score =  186 bits (472), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 122/389 (31%), Positives = 196/389 (50%), Gaps = 15/389 (3%)

Query: 151 RARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEE 210
           R  +LR  L +LGP FIK GQ+L+ R D++ ED  +EL +LQD VP F +Q +  +IE +
Sbjct: 55  RGARLRLALQDLGPIFIKFGQILSTRRDLLPEDIADELMLLQDRVPPFDSQKSVALIEAQ 114

Query: 211 LGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTL 270
           LG+ +  VFS+   + +A+AS+ QV+ A L+ TGE+V +KV RPG++PII +DL     L
Sbjct: 115 LGKKISDVFSRFDIEPLASASVAQVHAAKLK-TGEEVVVKVIRPGLKPIIAQDLAWLFIL 173

Query: 271 ASFLNGISIQKLGCNAEL-----IVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKI 325
           A      + +KL  +A L     +V ++ + + +ELD   EA N      NF+  P + +
Sbjct: 174 AR-----AAEKLSADARLLHPVDVVSDYEKTIYDELDLLREAANASQLKRNFEGSPLLYV 228

Query: 326 PRVYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGD 385
           P+VY      +VLVME I GI+ TD   +     D+      GV     Q+     FH D
Sbjct: 229 PQVYWDWCRPKVLVMERIYGIQVTDLATLADQRTDMKMLAERGVEIFFTQVFRDSFFHAD 288

Query: 386 PHPGNIFAMR----DGRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLG 441
            HPGNIF         +   +D G V  L+ +++  L   +      DY  +A      G
Sbjct: 289 MHPGNIFVSTVQPWSPQYIAIDCGIVGSLTPEDQDYLARNLFAFFKRDYRRVAQLHIDSG 348

Query: 442 FLAKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRS 501
           ++   T ++    A+  + +    K L D +F  V  +  +    + + +  +  L+ ++
Sbjct: 349 WVPAETKLNEFEAAIRTVCEPIFEKPLKDISFGQVLMRLFQTARRFNMEVQPQLVLLQKT 408

Query: 502 LLTQEGICFTLKPDFKFLEVAYPYVAKRL 530
           LL  EG+   L PD      A P++ + +
Sbjct: 409 LLNIEGLGRQLYPDLDLWNTAQPFLERWM 437


>sp|A3D9F4|UBIB_SHEB5 Probable ubiquinone biosynthesis protein UbiB OS=Shewanella baltica
           (strain OS155 / ATCC BAA-1091) GN=ubiB PE=3 SV=1
          Length = 549

 Score =  186 bits (471), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 120/414 (28%), Positives = 206/414 (49%), Gaps = 11/414 (2%)

Query: 143 RDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQV 202
           R+K        +L+  +  LGP +IK GQ+L+ R D++ +++ +EL +LQD VP F   +
Sbjct: 45  RNKHKNKPGGERLKLAMQELGPVYIKLGQMLSTRRDLLSDEWASELAMLQDKVPPFDGAL 104

Query: 203 AFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYR 262
           A   IE EL  P+E++F   +   +A+AS+ QV+ ATL+  G+DV +KV RP +E  I  
Sbjct: 105 ARQAIEAELKAPIESLFDDFNEIPLASASISQVHTATLKSNGKDVVLKVLRPNVETKIQA 164

Query: 263 DLFLFRTLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPT 322
           DL L    A  +  +  +        +++++   +L EL+  LEA N      NF D   
Sbjct: 165 DLQLMSQTAKLIEYLLGEGNRLRPAEVIEDYRVTILGELNLKLEALNAVKLRNNFLDSDA 224

Query: 323 VKIPRVYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLF 382
           + +P VY+     R++VME I GI  +D  A+K  G +       GV     Q+     F
Sbjct: 225 LYVPYVYEEFCYPRLMVMERIYGISVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFF 284

Query: 383 HGDPHPGNIFAMRDG----RIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFT 438
           H D HPGNIF  RD         +D G +  LS+ +K+ L +  +   N DY  +A  + 
Sbjct: 285 HADMHPGNIFISRDHPENPYYIGLDCGIMGTLSEVDKRYLAENFLAFFNRDYHRIAQLYI 344

Query: 439 RLGFLAKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLV 498
             G++++ TD+     A++ + +    K L + +F  V  +  +   ++ I +  +  L+
Sbjct: 345 ESGWVSEKTDLQAFEQAIKVVCEPMFNKPLDEISFGHVLLELFRTARHFDIVVQPQLVLL 404

Query: 499 IRSLLTQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNPALRERLIQAKFKELAS 552
            ++LL  EG+   L P     + A P++ + +     P       +A FK++++
Sbjct: 405 EKTLLYIEGLGRQLYPQLDLWQTAKPFLEQWMADQVGP-------KAMFKKVST 451


>sp|B8E6B4|UBIB_SHEB2 Probable ubiquinone biosynthesis protein UbiB OS=Shewanella baltica
           (strain OS223) GN=ubiB PE=3 SV=1
          Length = 549

 Score =  186 bits (471), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 120/414 (28%), Positives = 206/414 (49%), Gaps = 11/414 (2%)

Query: 143 RDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQV 202
           R+K        +L+  +  LGP +IK GQ+L+ R D++ +++ +EL +LQD VP F   +
Sbjct: 45  RNKHKNKPGGERLKLAMQELGPVYIKLGQMLSTRRDLLSDEWASELAMLQDKVPPFDGAL 104

Query: 203 AFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYR 262
           A   IE EL  P+E++F   +   +A+AS+ QV+ ATL+  G+DV +KV RP +E  I  
Sbjct: 105 ARQAIEAELKAPIESLFDDFNEIPLASASISQVHTATLKSNGKDVVLKVLRPNVETKIQA 164

Query: 263 DLFLFRTLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPT 322
           DL L    A  +  +  +        +++++   +L EL+  LEA N      NF D   
Sbjct: 165 DLQLMSQTAKLIEYLLGEGNRLRPAEVIEDYRVTILGELNLKLEALNAVKLRNNFLDSDA 224

Query: 323 VKIPRVYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLF 382
           + +P VY+     R++VME I GI  +D  A+K  G +       GV     Q+     F
Sbjct: 225 LYVPYVYEEFCYPRLMVMERIYGISVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFF 284

Query: 383 HGDPHPGNIFAMRDG----RIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFT 438
           H D HPGNIF  RD         +D G +  LS+ +K+ L +  +   N DY  +A  + 
Sbjct: 285 HADMHPGNIFISRDHPENPYYIGLDCGIMGTLSEVDKRYLAENFLAFFNRDYHRIAQLYI 344

Query: 439 RLGFLAKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLV 498
             G++++ TD+     A++ + +    K L + +F  V  +  +   ++ I +  +  L+
Sbjct: 345 ESGWVSEKTDLQAFEQAIKVVCEPMFNKPLDEISFGHVLLELFRTARHFDIVVQPQLVLL 404

Query: 499 IRSLLTQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNPALRERLIQAKFKELAS 552
            ++LL  EG+   L P     + A P++ + +     P       +A FK++++
Sbjct: 405 EKTLLYIEGLGRQLYPQLDLWQTAKPFLEQWMADQVGP-------KAMFKKVST 451


>sp|Q48PJ6|UBIB_PSE14 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
           syringae pv. phaseolicola (strain 1448A / Race 6)
           GN=ubiB PE=3 SV=1
          Length = 539

 Score =  186 bits (471), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 124/400 (31%), Positives = 196/400 (49%), Gaps = 7/400 (1%)

Query: 135 LTYDCLVGRDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDD 194
           L +  L  R  E+   R  + R  L +LGP FIK GQ+L+ R D++ ED  +EL +LQD 
Sbjct: 41  LPWRWLPRRKSEL--SRGVRFRLALQDLGPIFIKFGQLLSTRRDLLPEDIADELMLLQDR 98

Query: 195 VPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRP 254
           VP F  QVA N+IEE+LG  +  VFS+     +A+AS+ QV+ A L+ TGE+V +KV RP
Sbjct: 99  VPPFDQQVAINLIEEQLGARICDVFSRFDETPLASASVAQVHAACLK-TGEEVVVKVVRP 157

Query: 255 GIEPIIYRDLFLFRTLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFL 314
           G++P+I +DL     LA     +S      +   +V ++ + + +ELD   EA N     
Sbjct: 158 GLKPVIGQDLAWLFILARMAERVSADARLLHPVQVVMDYEKTIYDELDLLREAANSSQLR 217

Query: 315 ENFKDDPTVKIPRVYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALR 374
            NF+    + +P+VY      +VLVME I G++ TD   +     D+      GV     
Sbjct: 218 RNFEGSDLLYVPQVYWDWCRPKVLVMERIYGLQVTDMAGLADQRTDMKLLAERGVEIFFT 277

Query: 375 QLLEFGLFHGDPHPGNIFAMR----DGRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDY 430
           Q+     FH D HPGNIF         +   +D G V  L+ +++  L   +      DY
Sbjct: 278 QIFRDSFFHADMHPGNIFVSTVNPWSPKYIAIDCGIVGSLTPEDQDYLARNLFAFFKRDY 337

Query: 431 AEMANDFTRLGFLAKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIR 490
             +A      G++   T ++    A+  + +    K L D +F  V  +  +    + + 
Sbjct: 338 RRVAQLHIDSGWVPAETKLNEFEAAIRTVCEPIFEKPLKDISFGQVLMRLFQTARRFNME 397

Query: 491 IPERFSLVIRSLLTQEGICFTLKPDFKFLEVAYPYVAKRL 530
           +  +  L+ ++LL  EG+   L PD      A PY+ + +
Sbjct: 398 VQPQLVLLQKTLLNIEGLGRQLYPDLDLWSTAQPYLERWM 437


>sp|A0L1M6|UBIB_SHESA Probable ubiquinone biosynthesis protein UbiB OS=Shewanella sp.
           (strain ANA-3) GN=ubiB PE=3 SV=1
          Length = 549

 Score =  185 bits (470), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 120/414 (28%), Positives = 204/414 (49%), Gaps = 11/414 (2%)

Query: 143 RDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQV 202
           R+K        +L+  +  LGP +IK GQ+L+ R D++ +++ NEL +LQD VP F   +
Sbjct: 45  RNKHKGKSGGERLKLAMQELGPVYIKLGQMLSTRRDLLSDEWANELAMLQDKVPPFDGAL 104

Query: 203 AFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYR 262
           A   IE EL  P+E+ F       +A+AS+ QV+ ATL+  G+ V +KV RP +E  I  
Sbjct: 105 ARQAIEAELKAPIESYFDDFDETPLASASISQVHTATLKSNGKAVVLKVLRPNVETKIQA 164

Query: 263 DLFLFRTLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPT 322
           DL L    A  ++ +  +        +++++   +L EL+  LEA N      NF D   
Sbjct: 165 DLLLMSQTAKVIDYLLGEGNRLRPSEVIEDYRVTILGELNLKLEALNAIKLRNNFLDSDA 224

Query: 323 VKIPRVYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLF 382
           + IP VY+     R++VME I GI  +D  A+K  G +       GV     Q+     F
Sbjct: 225 LYIPYVYEEFCYPRLMVMERIYGIPVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFF 284

Query: 383 HGDPHPGNIFAMRDG----RIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFT 438
           H D HPGNIF  R+         +D G +  LS+ +K+ L +  +   N DY  +A  + 
Sbjct: 285 HADMHPGNIFISREHPENPYYIGLDCGIMGTLSEVDKRYLAENFLAFFNRDYHRIAQLYI 344

Query: 439 RLGFLAKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLV 498
             G++++ TD+     A++ + +    K L + +F  V  +  +   ++ I +  +  L+
Sbjct: 345 ESGWVSEKTDLQAFEQAIKVVCEPMFNKPLDEISFGHVLLELFRTARHFDIVVQPQLVLL 404

Query: 499 IRSLLTQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNPALRERLIQAKFKELAS 552
            ++LL  EG+   L P     + A P++ + +     P       +A FK++++
Sbjct: 405 EKTLLYIEGLGRQLYPQLDLWQTAKPFLEQWMAEQVGP-------KAMFKKVST 451


>sp|C3K8U2|UBIB_PSEFS Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
           fluorescens (strain SBW25) GN=ubiB PE=3 SV=1
          Length = 534

 Score =  185 bits (469), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 120/390 (30%), Positives = 194/390 (49%), Gaps = 5/390 (1%)

Query: 145 KEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAF 204
           K++   R  +LR  L +LGP FIK GQ+L+ R D++ ED  +EL +LQD VP F +Q + 
Sbjct: 49  KQLELSRGARLRLALQDLGPIFIKFGQILSTRRDLLPEDIADELMLLQDRVPPFDSQQSM 108

Query: 205 NIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDL 264
            +IEE+LG+ +  VFS+     +A+AS+ QV+ A L+ TGE+V +KV RPG++PII +DL
Sbjct: 109 KLIEEQLGKKISEVFSRFDVDPLASASVAQVHAAQLK-TGEEVVVKVIRPGLKPIIGQDL 167

Query: 265 FLFRTLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVK 324
                LA      S      +   +V ++ + + +ELD   EA N      NF+  P + 
Sbjct: 168 AWLFILARAAERFSADARLLHPVDVVADYEKTIYDELDLLREAANASQLKRNFEGSPLLY 227

Query: 325 IPRVYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHG 384
           +P+VY      +VLVME I G++ TD   +     D+      GV     Q+     FH 
Sbjct: 228 VPQVYWDWCRPKVLVMERIYGVQVTDLATLADQRTDMKMLAERGVEIFFTQVFRDSFFHA 287

Query: 385 DPHPGNIFAMR----DGRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRL 440
           D HPGNIF         +   +D G V  L+ +++  L   +      DY  +A      
Sbjct: 288 DMHPGNIFVSTVNPWSPQYIAIDCGIVGSLTPEDQDYLARNLFAFFKRDYRRVAQLHIDS 347

Query: 441 GFLAKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIR 500
           G++   T ++    A+  + +    K L D +F  V  +  +    + + +  +  L+ +
Sbjct: 348 GWVPAETKLNEFEAAIRTVCEPIFEKPLKDISFGQVLMRLFQTARRFNMEVQPQLVLLQK 407

Query: 501 SLLTQEGICFTLKPDFKFLEVAYPYVAKRL 530
           +LL  EG+   L PD      A P++ + +
Sbjct: 408 TLLNIEGLGRQLYPDLDLWNTAQPFLERWM 437


>sp|Q63X97|UBIB_BURPS Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
           pseudomallei (strain K96243) GN=ubiB PE=3 SV=1
          Length = 525

 Score =  185 bits (469), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 122/389 (31%), Positives = 193/389 (49%), Gaps = 8/389 (2%)

Query: 152 ARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEEL 211
           A +LR  L +LGP F+K GQVL+ R D++  D+ NEL  LQD VP F + VA  I+E+ L
Sbjct: 49  AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108

Query: 212 GRPLEAVFSKISSQTIAAASLGQVYRATLRE---TGEDVAIKVQRPGIEPIIYRDLFLFR 268
           G  ++ +F +     +A+AS+ QV+ A L++    G+ VA+KV RP + P+I  DL L R
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168

Query: 269 TLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRV 328
            +A++   +           +V EF + L +ELD   EA N      NF     + +P +
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228

Query: 329 YKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHP 388
           +   S   VLVME + G+  +    ++ AG+D+      GV     Q+   G FH D HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288

Query: 389 GNIFAMRD----GRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLA 444
           GNI    D    GR   +DFG V  LS  +K  L    +     DY  +A      G++ 
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348

Query: 445 KGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLT 504
             T V  +  A+ A+ +    + L D +   V  +       + + I  +  L+ +++L 
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408

Query: 505 QEGICFTLKPDFKFLEVAYPYVAKRLLTD 533
            EG+  +L P+    + A PY+ +R +T+
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYL-ERWMTE 436


>sp|A3N5V1|UBIB_BURP6 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
           pseudomallei (strain 668) GN=ubiB PE=3 SV=1
          Length = 525

 Score =  185 bits (469), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 122/389 (31%), Positives = 193/389 (49%), Gaps = 8/389 (2%)

Query: 152 ARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEEL 211
           A +LR  L +LGP F+K GQVL+ R D++  D+ NEL  LQD VP F + VA  I+E+ L
Sbjct: 49  AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108

Query: 212 GRPLEAVFSKISSQTIAAASLGQVYRATLRE---TGEDVAIKVQRPGIEPIIYRDLFLFR 268
           G  ++ +F +     +A+AS+ QV+ A L++    G+ VA+KV RP + P+I  DL L R
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168

Query: 269 TLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRV 328
            +A++   +           +V EF + L +ELD   EA N      NF     + +P +
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228

Query: 329 YKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHP 388
           +   S   VLVME + G+  +    ++ AG+D+      GV     Q+   G FH D HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288

Query: 389 GNIFAMRD----GRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLA 444
           GNI    D    GR   +DFG V  LS  +K  L    +     DY  +A      G++ 
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348

Query: 445 KGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLT 504
             T V  +  A+ A+ +    + L D +   V  +       + + I  +  L+ +++L 
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408

Query: 505 QEGICFTLKPDFKFLEVAYPYVAKRLLTD 533
            EG+  +L P+    + A PY+ +R +T+
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYL-ERWMTE 436


>sp|Q3JVZ2|UBIB_BURP1 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
           pseudomallei (strain 1710b) GN=ubiB PE=3 SV=1
          Length = 525

 Score =  185 bits (469), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 122/389 (31%), Positives = 193/389 (49%), Gaps = 8/389 (2%)

Query: 152 ARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEEL 211
           A +LR  L +LGP F+K GQVL+ R D++  D+ NEL  LQD VP F + VA  I+E+ L
Sbjct: 49  AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108

Query: 212 GRPLEAVFSKISSQTIAAASLGQVYRATLRE---TGEDVAIKVQRPGIEPIIYRDLFLFR 268
           G  ++ +F +     +A+AS+ QV+ A L++    G+ VA+KV RP + P+I  DL L R
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168

Query: 269 TLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRV 328
            +A++   +           +V EF + L +ELD   EA N      NF     + +P +
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228

Query: 329 YKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHP 388
           +   S   VLVME + G+  +    ++ AG+D+      GV     Q+   G FH D HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288

Query: 389 GNIFAMRD----GRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLA 444
           GNI    D    GR   +DFG V  LS  +K  L    +     DY  +A      G++ 
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348

Query: 445 KGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLT 504
             T V  +  A+ A+ +    + L D +   V  +       + + I  +  L+ +++L 
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408

Query: 505 QEGICFTLKPDFKFLEVAYPYVAKRLLTD 533
            EG+  +L P+    + A PY+ +R +T+
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYL-ERWMTE 436


>sp|A3NRJ7|UBIB_BURP0 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
           pseudomallei (strain 1106a) GN=ubiB PE=3 SV=1
          Length = 525

 Score =  185 bits (469), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 122/389 (31%), Positives = 193/389 (49%), Gaps = 8/389 (2%)

Query: 152 ARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEEL 211
           A +LR  L +LGP F+K GQVL+ R D++  D+ NEL  LQD VP F + VA  I+E+ L
Sbjct: 49  AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108

Query: 212 GRPLEAVFSKISSQTIAAASLGQVYRATLRE---TGEDVAIKVQRPGIEPIIYRDLFLFR 268
           G  ++ +F +     +A+AS+ QV+ A L++    G+ VA+KV RP + P+I  DL L R
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168

Query: 269 TLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRV 328
            +A++   +           +V EF + L +ELD   EA N      NF     + +P +
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228

Query: 329 YKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHP 388
           +   S   VLVME + G+  +    ++ AG+D+      GV     Q+   G FH D HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288

Query: 389 GNIFAMRD----GRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLA 444
           GNI    D    GR   +DFG V  LS  +K  L    +     DY  +A      G++ 
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348

Query: 445 KGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLT 504
             T V  +  A+ A+ +    + L D +   V  +       + + I  +  L+ +++L 
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408

Query: 505 QEGICFTLKPDFKFLEVAYPYVAKRLLTD 533
            EG+  +L P+    + A PY+ +R +T+
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYL-ERWMTE 436


>sp|A1V750|UBIB_BURMS Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
           mallei (strain SAVP1) GN=ubiB PE=3 SV=1
          Length = 525

 Score =  185 bits (469), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 122/389 (31%), Positives = 193/389 (49%), Gaps = 8/389 (2%)

Query: 152 ARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEEL 211
           A +LR  L +LGP F+K GQVL+ R D++  D+ NEL  LQD VP F + VA  I+E+ L
Sbjct: 49  AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108

Query: 212 GRPLEAVFSKISSQTIAAASLGQVYRATLRE---TGEDVAIKVQRPGIEPIIYRDLFLFR 268
           G  ++ +F +     +A+AS+ QV+ A L++    G+ VA+KV RP + P+I  DL L R
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168

Query: 269 TLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRV 328
            +A++   +           +V EF + L +ELD   EA N      NF     + +P +
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228

Query: 329 YKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHP 388
           +   S   VLVME + G+  +    ++ AG+D+      GV     Q+   G FH D HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288

Query: 389 GNIFAMRD----GRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLA 444
           GNI    D    GR   +DFG V  LS  +K  L    +     DY  +A      G++ 
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348

Query: 445 KGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLT 504
             T V  +  A+ A+ +    + L D +   V  +       + + I  +  L+ +++L 
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408

Query: 505 QEGICFTLKPDFKFLEVAYPYVAKRLLTD 533
            EG+  +L P+    + A PY+ +R +T+
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYL-ERWMTE 436


>sp|Q62MP2|UBIB_BURMA Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
           mallei (strain ATCC 23344) GN=ubiB PE=3 SV=1
          Length = 525

 Score =  185 bits (469), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 122/389 (31%), Positives = 193/389 (49%), Gaps = 8/389 (2%)

Query: 152 ARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEEL 211
           A +LR  L +LGP F+K GQVL+ R D++  D+ NEL  LQD VP F + VA  I+E+ L
Sbjct: 49  AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108

Query: 212 GRPLEAVFSKISSQTIAAASLGQVYRATLRE---TGEDVAIKVQRPGIEPIIYRDLFLFR 268
           G  ++ +F +     +A+AS+ QV+ A L++    G+ VA+KV RP + P+I  DL L R
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168

Query: 269 TLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRV 328
            +A++   +           +V EF + L +ELD   EA N      NF     + +P +
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228

Query: 329 YKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHP 388
           +   S   VLVME + G+  +    ++ AG+D+      GV     Q+   G FH D HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288

Query: 389 GNIFAMRD----GRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLA 444
           GNI    D    GR   +DFG V  LS  +K  L    +     DY  +A      G++ 
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348

Query: 445 KGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLT 504
             T V  +  A+ A+ +    + L D +   V  +       + + I  +  L+ +++L 
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408

Query: 505 QEGICFTLKPDFKFLEVAYPYVAKRLLTD 533
            EG+  +L P+    + A PY+ +R +T+
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYL-ERWMTE 436


>sp|A2S8L4|UBIB_BURM9 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
           mallei (strain NCTC 10229) GN=ubiB PE=3 SV=1
          Length = 525

 Score =  185 bits (469), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 122/389 (31%), Positives = 193/389 (49%), Gaps = 8/389 (2%)

Query: 152 ARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEEL 211
           A +LR  L +LGP F+K GQVL+ R D++  D+ NEL  LQD VP F + VA  I+E+ L
Sbjct: 49  AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108

Query: 212 GRPLEAVFSKISSQTIAAASLGQVYRATLRE---TGEDVAIKVQRPGIEPIIYRDLFLFR 268
           G  ++ +F +     +A+AS+ QV+ A L++    G+ VA+KV RP + P+I  DL L R
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168

Query: 269 TLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRV 328
            +A++   +           +V EF + L +ELD   EA N      NF     + +P +
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228

Query: 329 YKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHP 388
           +   S   VLVME + G+  +    ++ AG+D+      GV     Q+   G FH D HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288

Query: 389 GNIFAMRD----GRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLA 444
           GNI    D    GR   +DFG V  LS  +K  L    +     DY  +A      G++ 
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348

Query: 445 KGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLT 504
             T V  +  A+ A+ +    + L D +   V  +       + + I  +  L+ +++L 
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408

Query: 505 QEGICFTLKPDFKFLEVAYPYVAKRLLTD 533
            EG+  +L P+    + A PY+ +R +T+
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYL-ERWMTE 436


>sp|A3MNU1|UBIB_BURM7 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
           mallei (strain NCTC 10247) GN=ubiB PE=3 SV=1
          Length = 525

 Score =  185 bits (469), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 122/389 (31%), Positives = 193/389 (49%), Gaps = 8/389 (2%)

Query: 152 ARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEEL 211
           A +LR  L +LGP F+K GQVL+ R D++  D+ NEL  LQD VP F + VA  I+E+ L
Sbjct: 49  AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108

Query: 212 GRPLEAVFSKISSQTIAAASLGQVYRATLRE---TGEDVAIKVQRPGIEPIIYRDLFLFR 268
           G  ++ +F +     +A+AS+ QV+ A L++    G+ VA+KV RP + P+I  DL L R
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168

Query: 269 TLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRV 328
            +A++   +           +V EF + L +ELD   EA N      NF     + +P +
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228

Query: 329 YKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHP 388
           +   S   VLVME + G+  +    ++ AG+D+      GV     Q+   G FH D HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288

Query: 389 GNIFAMRD----GRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLA 444
           GNI    D    GR   +DFG V  LS  +K  L    +     DY  +A      G++ 
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348

Query: 445 KGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLT 504
             T V  +  A+ A+ +    + L D +   V  +       + + I  +  L+ +++L 
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408

Query: 505 QEGICFTLKPDFKFLEVAYPYVAKRLLTD 533
            EG+  +L P+    + A PY+ +R +T+
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYL-ERWMTE 436


>sp|C5CWY2|UBIB_VARPS Probable ubiquinone biosynthesis protein UbiB OS=Variovorax
           paradoxus (strain S110) GN=ubiB PE=3 SV=1
          Length = 521

 Score =  185 bits (469), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 134/461 (29%), Positives = 214/461 (46%), Gaps = 26/461 (5%)

Query: 120 RGVEIVWSLGLY-------------WSNLTYDCL-VGRDKEVVPDRARQLRNLLCNLGPS 165
           RG+ IVW    Y             W  +    + +GR+ +    R ++LR  L  LGP 
Sbjct: 6   RGIFIVWVALRYGLDELVLTSFQKPWLRVVARIVSIGRNLDA--PRGQRLREALERLGPI 63

Query: 166 FIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQ 225
           F+K GQVL+ R D++  D  +EL  LQD VP FP+ VA   IE    RP+  VF +    
Sbjct: 64  FVKFGQVLSTRRDLLPPDIADELAFLQDRVPPFPSAVAIATIERAFRRPVGDVFVQFDET 123

Query: 226 TIAAASLGQVYRATLR-ETGE--DVAIKVQRPGIEPIIYRDLFLFRTLASFLNGISIQKL 282
            IA+AS+ QV+ AT+R + GE  +VA+KV RP +  +I +DL L   +A ++  +S    
Sbjct: 124 PIASASIAQVHFATIRTDEGEVREVAVKVLRPSMRGVIEKDLALMAMMAGWVEKLSPDGK 183

Query: 283 GCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRVYKRLSGSRVLVMEW 342
                 +V EF + L +ELD   EA N      N      V IP ++       V+VME 
Sbjct: 184 RLKPREVVGEFDKYLHDELDLVREAANAAQLRRNMASLELVLIPEMFWDFCHPEVIVMER 243

Query: 343 IDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRD----GR 398
           ++G+       ++ AG+D+      GV+    Q+   G FH D HPGNI         GR
Sbjct: 244 MNGVPIAQLDRLRAAGVDIPKLARDGVTIFFTQVFRDGFFHADMHPGNIQVSLAPETFGR 303

Query: 399 IAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLAKGTDVSPIIPALEA 458
              +DFG +  L++ +K+ L    V     DY  +A      G++ +GT +  +  A+  
Sbjct: 304 YISLDFGIIGTLTESDKEYLAQNFVAFFRRDYKRVAELHLESGWVPEGTRIDELEGAIRT 363

Query: 459 IWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLTQEGICFTLKPDFKF 518
           + +    + L + +   V  +  +    + + I  +  L+ ++LL  EG+   L P+   
Sbjct: 364 VCEPYFDRPLKEISLGMVLMRLFQTSRRFHVEIQPQLVLLQKTLLNIEGLGRQLDPELDL 423

Query: 519 LEVAYPYVAKRLLTDPNPALRERLIQAKFKELASSKKIGPN 559
              A P++ K ++    P   ++L Q    E     K+ P 
Sbjct: 424 WHTAKPFLEKWMVDQIGP---KKLFQQLKAEAPRYAKLLPE 461


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.137    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 201,331,290
Number of Sequences: 539616
Number of extensions: 8474909
Number of successful extensions: 25496
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 24755
Number of HSP's gapped (non-prelim): 300
length of query: 559
length of database: 191,569,459
effective HSP length: 123
effective length of query: 436
effective length of database: 125,196,691
effective search space: 54585757276
effective search space used: 54585757276
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)