BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008617
(559 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q68CZ6|HAUS3_HUMAN HAUS augmin-like complex subunit 3 OS=Homo sapiens GN=HAUS3 PE=1
SV=1
Length = 603
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 121/537 (22%), Positives = 222/537 (41%), Gaps = 83/537 (15%)
Query: 3 GARLCALLCELGYGGADSLDPDSFEWPFQYDDARPILDWICSSLRPSNVLSLSELSQFEQ 62
G L ++GY AD+L+ + F+W F+ + L W C ++ NVLS EL F
Sbjct: 4 GNEFVETLKKIGYPKADNLNGEDFDWLFEGVEDESFLKWFCGNVNEQNVLSERELEAF-S 62
Query: 63 FLQE--EKLLEGEDLESAFDSISAF---SSRRDDQE------------------------ 93
LQ+ + +LEG L+ A + + R DD+E
Sbjct: 63 ILQKSGKPILEGAALDEALKTCKTSDLKTPRLDDKELEKLEDEVQTLLKLKNLKIQRRNK 122
Query: 94 -AVFGSEEGLKDIR------EATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLM----- 141
+ S K +R EAT+ + L + + + LT + LM
Sbjct: 123 CQLMASVTSHKSLRLNAKEEEATKKLKQSQGILNAMITKISNELQALTDEVTQLMMFFRH 182
Query: 142 ----QGRRARVAATS-TVNGHLSILDDGLSARNL-------QGPFRLVAEEGKSKCSWVS 189
QG V + ++ +LS + +A L QG +V + +
Sbjct: 183 SNLGQGTNPLVFLSQFSLEKYLSQEEQSTAALTLYTKKQFFQGIHEVVESSNEDNFQLLD 242
Query: 190 LGDESNILVRDLEKSHHQRVSELQRLRSVFGTSERQWVEAQVENAKQQAILMTLKSQVAS 249
+ S + D ++ +R E+ RL+ + ++ Q + + N+ ++KS +
Sbjct: 243 IQTPS---ICDNQEILEERRLEMARLQLAYICAQHQLIHLKASNS-------SMKSSIKW 292
Query: 250 DEAYIH------LDFHSLKRKHVELVGELSNLHHKEEKLLSETIPDLCWELAQLQDTYIL 303
E +H +D +L K L E+ L + ++ ++P + E AQL + ++
Sbjct: 293 AEESLHSLTSKAVDKENLDAKISSLTSEIMKLEKEVTQIKDRSLPAVVRENAQLLNMPVV 352
Query: 304 QGDYDLKVMRQELYISRQKAFINHLINQLARHQFLRLACHLEKRNMLAAYSLLKVIESEL 363
+GD+DL++ +Q+ Y +RQ+ +N LI Q A + L+L+ +E R Y L+ + E
Sbjct: 353 KGDFDLQIAKQDYYTARQELVLNQLIKQKASFELLQLSYEIELRKHRDIYRQLENLVQE- 411
Query: 364 QGYLSATKSRVGRCLALIEAAS---DVQEQGAVDDRDTFLHGVRDLLSIHSNAQAGLSTY 420
LS + + + L ++ S + + +D +D H + +L + + T+
Sbjct: 412 ---LSQSNMMLYKQLEMLTDPSVSQQINPRNTIDTKDYSTHRLYQVLEGENKKKELFLTH 468
Query: 421 VS----APGIVQQISGLRADLTALQSDLENSLPGDRNRCINELC-TLIQSLQQLLFA 472
+ A + Q IS L D A+ + + RN+ ++ LC TL Q QLL +
Sbjct: 469 GNLEEVAEKLKQNIS-LVQDQLAVSAQEHSFFLSKRNKDVDMLCDTLYQGGNQLLLS 524
>sp|Q8QZX2|HAUS3_MOUSE HAUS augmin-like complex subunit 3 OS=Mus musculus GN=Haus3 PE=2
SV=1
Length = 570
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 106/501 (21%), Positives = 211/501 (42%), Gaps = 74/501 (14%)
Query: 3 GARLCALLCELGYGGADSLDPDSFEWPFQYDDARPILDWICSSLRPSNVLSLSELSQFEQ 62
G L ++GY AD L+ + F+W F+ + L W C ++ NVLS EL F
Sbjct: 4 GNEFVETLKKIGYPKADILNGEDFDWLFEDVEDESFLKWFCGNVNEQNVLSEKELEAFSD 63
Query: 63 FLQEEK-LLEGEDLESAFDSISAF---SSRRDDQEAVFGSEEGLKDIREATQAYRDEAAQ 118
+ K +LEG L+ + F + + DD+E +E ++ +++ + +
Sbjct: 64 LQRSGKPILEGTALDEVLRTCKTFDLKTCKLDDKEIQILEDE-VQTLQKLNNSKIQRRNK 122
Query: 119 LQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLS--ARNLQGPFR- 175
Q + +F L A + + + ++VN LS GL+ NL FR
Sbjct: 123 YQLMVSETSYRFLALNAKQEEATKKLKQKQGFLNSVNTKLSNELQGLTEEVNNLMIFFRN 182
Query: 176 --------------------LVAEEGKSKCSW---------------VSLGDESNILVRD 200
+++E +S + V +E N + D
Sbjct: 183 SNLSERTNPMVFLSQFPLGKYISQEEQSTAALTLYTKKQFFQGMHEVVESSNEDNFQLLD 242
Query: 201 L--------EKSHHQRVSELQRLRSVFGTSERQWVEAQVENAKQQAILMTLKSQVASDEA 252
+ E+ +R E+ RL+ ++Q + + N +++KS + E
Sbjct: 243 IQTPSICDNEEILRERRLEMARLQMACICVQKQIIYLKTSN-------LSMKSSIKWAEE 295
Query: 253 YIH------LDFHSLKRKHVELVGELSNLHHKEEKLLSETIPDLCWELAQLQDTYILQGD 306
++ +D +L + L E+ L + + + +P + E AQL + +++GD
Sbjct: 296 NLNRLTNEVIDKENLDAEISSLNSEILKLEEQITHIKDKVLPAVVKEYAQLLNMPVVKGD 355
Query: 307 YDLKVMRQELYISRQKAFINHLINQLARHQFLRLACHLEKRNMLAAYSLLKVIESELQGY 366
++L++ +Q+ Y +RQ+ +N LI Q A + ++L+ +E R Y + +ES +Q
Sbjct: 356 FELQIAKQDYYTARQELVLNELIKQKASFELVQLSYEIELRKHWDTY---RQLESLVQQ- 411
Query: 367 LSATKSRVGRCLAL---IEAASDVQEQGAVDDRDTFLHGVRDLLSIHSNAQAGLSTYVSA 423
LS + + + LA+ I A+ + + +D +D H + +LL N + L +++
Sbjct: 412 LSQRNTVLCQHLAVLSDIPASEQLTSRTPIDTKDHSTHRLYELLE-GDNKKKEL--FITH 468
Query: 424 PGIVQQISGLRADLTALQSDL 444
+ + L+ D++ +Q L
Sbjct: 469 EHLEEVAEKLKQDVSVIQDQL 489
>sp|Q6DCY9|HAUS3_XENLA HAUS augmin-like complex subunit 3 OS=Xenopus laevis GN=haus3 PE=2
SV=1
Length = 597
Score = 66.6 bits (161), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 76/298 (25%), Positives = 141/298 (47%), Gaps = 17/298 (5%)
Query: 260 SLKRKHVELVGELSNLHHKEEKLLSETIPDLCWELAQLQDTYILQGDYDLKVMRQELYIS 319
+LK + L E + + + +E +P L + AQL + I++GDYDL++ Q S
Sbjct: 307 NLKVRITSLKNETLQIENHTNSISNEKLPGLVRDNAQLLNMPIVKGDYDLQMAHQTSCSS 366
Query: 320 RQKAFINHLINQLARHQFLRLACHLEKRNMLAAYSLLKVIESELQGYLSATKSRVGRCLA 379
RQ +HL+ Q A + L+L LE R Y L I EL+ + R+ L+
Sbjct: 367 RQDLVCDHLMKQKASFELLQLGYELELRKHRDVYRELGSIVQELKESGDKLEERL-TMLS 425
Query: 380 LIEAASDVQEQGAVDDRDTFLHGVRDLLSIHSNAQAGLSTYVSAPGIVQQISGLRADLTA 439
+ S + + +D +D H + LL N Q TY + Q++S D+ +
Sbjct: 426 DVNLLSASKPRSNIDSKDLTSHRLYQLLD-GDNTQKLFRTYDGLESVAQKLS---QDIAS 481
Query: 440 LQSDLENSLPGDRNRCINELCTLIQSLQQLLFASSTTAQPILTPRPLMKEL----DEMEK 495
++ LE S + + +++L + ++ L+ ++ T +LT L E ++EK
Sbjct: 482 MRDQLEVS-EQEHSLLLSKLDSHLKELRDFMYPEGNTL--MLTTPELSGEFHQLGSQLEK 538
Query: 496 INAKLSVAVEEVTLEHCKKNEIIKHHSQEVGLQRRVFVDFFCNPERLRSQVRELTARV 553
+N + VE + K+ + + Q++ +++++V FF N E+L+S V +L A+
Sbjct: 539 LN---HITVEILGDLQLKRKMLESNKLQQI--EKQLYVYFFQNEEQLKSIVGKLEAQT 591
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 1 MSGA-RLCALLCELGYGGADSLDPDSFEWPFQYDDARPILDWICSSLRPSNVLSLSELSQ 59
MSG R L +L Y LD + F+W F+ D +P LDW CS+ NV+ +L
Sbjct: 1 MSGGDRFVQTLQKLNYPKGAQLDGEDFDWLFEAVDLKPFLDWFCSAASEQNVVPDEKLQA 60
Query: 60 F 60
F
Sbjct: 61 F 61
>sp|Q7MYZ0|PNP_PHOLL Polyribonucleotide nucleotidyltransferase OS=Photorhabdus
luminescens subsp. laumondii (strain TT01) GN=pnp PE=3
SV=1
Length = 709
Score = 37.7 bits (86), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 11/93 (11%)
Query: 176 LVAEEGKSKCSWVSLGDESNILVRDLEKSHHQRVSEL--QRLRSVFGTSERQWVEAQVEN 233
L AE GK K +WV + ++ H RV+ L RL + +E+Q AQV+
Sbjct: 222 LAAEAGKEKWNWVP---------ESVNQALHDRVAGLAEDRLGDAYRITEKQERYAQVDA 272
Query: 234 AKQQAILMTLKSQVASDEAYIHLDFHSLKRKHV 266
K++ L+ A +EA IH SL++K V
Sbjct: 273 IKEEVTAALLEQDEALEEAEIHEILGSLEKKVV 305
>sp|B2UNE3|GSA_AKKM8 Glutamate-1-semialdehyde 2,1-aminomutase OS=Akkermansia muciniphila
(strain ATCC BAA-835) GN=hemL PE=3 SV=1
Length = 426
Score = 35.8 bits (81), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 55/131 (41%), Gaps = 15/131 (11%)
Query: 396 RDTFLHGVR------DLLSIHSNAQAGLSTYVSAPGIVQQISGLRADLTALQSDLENSLP 449
++ FLH +R D L I G APG VQQ+ G+ DLT + + LP
Sbjct: 216 QNDFLHFLREITLRHDTLLIFDEVMTGFRV---APGGVQQLYGITPDLTCMGKVIGGGLP 272
Query: 450 GDRNRCINELCTLIQSLQQLLFASSTTAQPILTPRPLMKELDEMEKINA-----KLSVAV 504
+E+ + L + A + + P+ L +L E+ K NA +L +
Sbjct: 273 VGAFGGRSEIMDCLSPLGPVYQAGTLSGNPVAMAAGL-AQLRELLKGNAYERLEQLGARM 331
Query: 505 EEVTLEHCKKN 515
EE E KK+
Sbjct: 332 EEGIREALKKH 342
>sp|P41121|PNP_PHOLU Polyribonucleotide nucleotidyltransferase OS=Photorhabdus
luminescens GN=pnp PE=1 SV=1
Length = 709
Score = 35.4 bits (80), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 11/93 (11%)
Query: 176 LVAEEGKSKCSWVSLGDESNILVRDLEKSHHQRVSEL--QRLRSVFGTSERQWVEAQVEN 233
L AE GK K WV + ++ H RV+EL RL + +E+Q AQV+
Sbjct: 222 LAAEAGKEKWDWVP---------EPVNQALHDRVAELAESRLGDAYRITEKQERYAQVDA 272
Query: 234 AKQQAILMTLKSQVASDEAYIHLDFHSLKRKHV 266
K + L+ +EA IH SL++ V
Sbjct: 273 IKDEVTAALLEQDETLEEAEIHEILGSLEKNVV 305
>sp|Q54FB7|XDH_DICDI Xanthine dehydrogenase OS=Dictyostelium discoideum GN=xdh PE=3 SV=1
Length = 1358
Score = 34.7 bits (78), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 14/101 (13%)
Query: 356 LKVIESELQGYLSATKSRVGRCLALIEAASDVQEQGAVDDRDTFLHGVRDLLSIHSNAQA 415
+++ + G L + G + IE ++ D LH +++ +S +S +Q
Sbjct: 79 FRIVHRAVNGCLYPLCALDGMAVTTIEGLGNI---------DKGLHSIQERISENSGSQC 129
Query: 416 GLSTYVSAPGIVQQISG-LRADLTALQSDLENSLPGDRNRC 455
G T PGI+ + LR++ + Q D+E + G+ RC
Sbjct: 130 GFCT----PGIIMALYAFLRSNPNSTQKDIEQNFDGNLCRC 166
>sp|Q04DS4|GLMU_OENOB Bifunctional protein GlmU OS=Oenococcus oeni (strain ATCC BAA-331 /
PSU-1) GN=glmU PE=3 SV=1
Length = 426
Score = 34.7 bits (78), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 11/110 (10%)
Query: 24 DSFEWPFQYDDARPILDWICSSLR---PSNVLSL----SELSQF--EQFLQEEKLLEGED 74
D P P+L+WIC ++R P N++++ + S + E +Q+E+L +
Sbjct: 19 DDLSKPLHKVAGLPMLEWICRAVRKFNPKNIIAVQGADEDFSSYVDETVVQKEQLGSADA 78
Query: 75 LESAFDSISAFSSRRDDQEAVFGSEEGLKDIREATQAYRDEAAQLQRQLR 124
L AF I A + + +E L D+ E + + +AA L L+
Sbjct: 79 LRCAFPKIDAEKLIVINADMPLMTENDLVDLVEKGEGF--DAALLTADLK 126
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.132 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 187,726,146
Number of Sequences: 539616
Number of extensions: 7442654
Number of successful extensions: 25293
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 141
Number of HSP's that attempted gapping in prelim test: 25128
Number of HSP's gapped (non-prelim): 333
length of query: 559
length of database: 191,569,459
effective HSP length: 123
effective length of query: 436
effective length of database: 125,196,691
effective search space: 54585757276
effective search space used: 54585757276
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)