Query 008617
Match_columns 559
No_of_seqs 70 out of 72
Neff 5.3
Searched_HMMs 46136
Date Thu Mar 28 14:25:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008617.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008617hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14932 HAUS-augmin3: HAUS au 100.0 1.2E-40 2.7E-45 336.4 17.8 200 28-234 1-256 (256)
2 PF04849 HAP1_N: HAP1 N-termin 84.3 32 0.00069 36.6 14.8 83 33-125 38-122 (306)
3 PF13870 DUF4201: Domain of un 82.0 14 0.0003 35.6 10.4 107 205-327 58-164 (177)
4 PF00038 Filament: Intermediat 72.7 48 0.001 34.4 12.0 9 338-346 291-299 (312)
5 KOG4643 Uncharacterized coiled 60.2 4.2E+02 0.0091 32.9 26.8 62 227-299 375-436 (1195)
6 PRK11637 AmiB activator; Provi 58.9 2.8E+02 0.006 30.4 19.1 81 211-296 55-135 (428)
7 PF15397 DUF4618: Domain of un 48.8 3.2E+02 0.007 28.6 12.6 43 99-141 59-101 (258)
8 PF09730 BicD: Microtubule-ass 48.1 3E+02 0.0066 32.8 13.6 39 102-140 267-305 (717)
9 PF04912 Dynamitin: Dynamitin 44.3 2.5E+02 0.0054 30.6 11.6 114 424-557 264-388 (388)
10 cd08776 DED_Caspase-like_repea 43.6 27 0.00059 29.4 3.2 51 35-87 16-66 (71)
11 KOG4674 Uncharacterized conser 41.5 1E+03 0.022 31.7 30.6 30 491-520 1077-1106(1822)
12 PF08232 Striatin: Striatin fa 41.0 1.4E+02 0.0029 28.0 7.8 58 323-380 4-61 (134)
13 PF07106 TBPIP: Tat binding pr 36.3 1.8E+02 0.004 27.6 8.2 56 224-288 86-141 (169)
14 KOG0971 Microtubule-associated 35.5 7.1E+02 0.015 30.8 13.8 130 344-504 255-384 (1243)
15 PF15397 DUF4618: Domain of un 35.1 2.5E+02 0.0054 29.4 9.3 26 533-558 196-221 (258)
16 PF03801 Ndc80_HEC: HEC/Ndc80p 33.6 17 0.00037 34.8 0.6 39 5-47 96-140 (157)
17 PF09727 CortBP2: Cortactin-bi 33.4 5.1E+02 0.011 26.0 11.9 92 285-376 57-152 (192)
18 KOG0709 CREB/ATF family transc 32.9 64 0.0014 36.2 4.9 85 50-140 219-312 (472)
19 PF08317 Spc7: Spc7 kinetochor 31.2 6.6E+02 0.014 26.6 22.9 33 259-295 78-110 (325)
20 KOG4674 Uncharacterized conser 30.8 1.4E+03 0.031 30.4 31.5 142 211-372 1061-1202(1822)
21 PF09304 Cortex-I_coil: Cortex 29.0 1.9E+02 0.0041 26.4 6.4 42 99-140 22-63 (107)
22 PF00573 Ribosomal_L4: Ribosom 28.2 21 0.00045 35.3 0.2 65 4-77 123-188 (192)
23 PF10168 Nup88: Nuclear pore c 27.8 5.2E+02 0.011 30.8 11.5 151 386-556 492-658 (717)
24 PRK10884 SH3 domain-containing 27.4 4.6E+02 0.0099 26.4 9.5 72 424-520 89-160 (206)
25 PF10805 DUF2730: Protein of u 27.0 2.8E+02 0.0061 24.8 7.2 52 231-284 42-93 (106)
26 PRK09039 hypothetical protein; 26.5 2.6E+02 0.0057 30.1 8.2 38 211-248 124-161 (343)
27 PF09006 Surfac_D-trimer: Lung 26.1 57 0.0012 25.4 2.2 19 540-558 2-20 (46)
28 PF08172 CASP_C: CASP C termin 26.0 5.8E+02 0.013 26.4 10.2 110 259-381 9-137 (248)
29 cd08337 DED_c-FLIP_repeat1 Dea 26.0 62 0.0013 27.9 2.7 51 35-87 17-67 (80)
30 PF12252 SidE: Dot/Icm substra 24.6 1.5E+03 0.033 28.7 17.1 227 273-516 972-1225(1439)
31 PF14817 HAUS5: HAUS augmin-li 22.3 1.3E+03 0.029 27.2 20.6 37 11-48 12-48 (632)
32 PF05565 Sipho_Gp157: Siphovir 22.3 3.3E+02 0.0073 26.0 7.2 72 65-143 18-90 (162)
33 PRK10869 recombination and rep 22.0 1.1E+03 0.024 27.0 12.5 31 205-235 301-331 (553)
34 PF08614 ATG16: Autophagy prot 21.9 2.2E+02 0.0047 27.9 6.0 38 103-140 133-170 (194)
35 PF03634 TCP: TCP family trans 21.4 36 0.00078 31.6 0.4 26 3-32 29-54 (138)
36 KOG4360 Uncharacterized coiled 21.1 9.8E+02 0.021 27.7 11.3 86 259-345 162-257 (596)
37 PF12558 DUF3744: ATP-binding 20.8 66 0.0014 27.0 1.8 44 6-49 15-58 (74)
38 KOG3958 Putative dynamitin [Cy 20.3 1.1E+03 0.024 25.5 12.3 116 424-556 246-369 (371)
39 KOG3759 Uncharacterized RUN do 20.0 4.8E+02 0.01 29.7 8.6 31 217-248 164-194 (621)
No 1
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=100.00 E-value=1.2e-40 Score=336.39 Aligned_cols=200 Identities=31% Similarity=0.409 Sum_probs=167.3
Q ss_pred ccCCCCCccchHHHHhccCCCCCCCCHHHHhHHHHHHHcccccccccHHHHHhHhccccCCCcchhhhhcchhhHHHHHH
Q 008617 28 WPFQYDDARPILDWICSSLRPSNVLSLSELSQFEQFLQEEKLLEGEDLESAFDSISAFSSRRDDQEAVFGSEEGLKDIRE 107 (559)
Q Consensus 28 WLF~~~e~~~FL~WfC~~V~~~NVLS~~EL~~f~~L~~sGkiLEg~aLdeal~t~~~~~~~~~~~e~~~~~ee~le~lk~ 107 (559)
|||++|+++|||+|||+||+++||||++|+++|++|+++||||+|+|||+||++|++++.++.++ +++.+++|++
T Consensus 1 Wlf~~~e~~~FL~W~c~~V~~~NvLS~~El~~~~~L~~~GkiLeg~~Ld~aL~~~~~~~~~~~~~-----~e~~le~Le~ 75 (256)
T PF14932_consen 1 WLFDDEEFESFLDWFCSNVNESNVLSEEELQAFEELQKSGKILEGEALDEALKTISAFSPKLLEL-----EEEDLEALEE 75 (256)
T ss_pred CCCCCccHHHHHHHHHccCChhccCCHHHHHHHHHHHHcCCcCCHHHHHHHHHHcccccCCcccc-----chHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998888777 3567888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh---------------------------------------hhhhHHHHHHhhhhhhhhh
Q 008617 108 ATQAYRDEAAQLQRQLRHLQCQ---------------------------------------FDMLTAHASTLMQGRRARV 148 (559)
Q Consensus 108 ~~~~L~~e~~~l~~~L~~lq~~---------------------------------------~d~l~~~~~~L~~~~~a~~ 148 (559)
++++|++......++++.++.. ++.+++.++++++.+....
T Consensus 76 el~~l~~~~~~~~~~~~~lq~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~k~~~~l~~l~~~v~~l~~~~~~~~ 155 (256)
T PF14932_consen 76 ELEALQEYKELYEQLRNKLQQLDSSLSQELSELEGKEEEAQKKLKKAQKELSAECSKLNNELNQLLGEVSKLASELAHAH 155 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888887777777766531 3345566666776655433
Q ss_pred hc---ccccccchhcchhhhh--------------hhhccCcchhhhccccccccccccCCccchhccchhhhHHhhHHH
Q 008617 149 AA---TSTVNGHLSILDDGLS--------------ARNLQGPFRLVAEEGKSKCSWVSLGDESNILVRDLEKSHHQRVSE 211 (559)
Q Consensus 149 ~~---~s~~~~~~~~Ld~yls--------------k~~l~Gi~~lv~~e~~~~~~~~~l~d~~~~~~d~~e~~~e~r~~E 211 (559)
.+ +.++|+++++|++|++ |+|++||+++| |+++.++|+.+|+..++.+.|.++.+++|+.|
T Consensus 156 ~~~~~~~~~flsq~~l~~Y~~~ee~~t~~L~~y~kKqF~~g~~~~~--e~s~~~~~~lld~~~~~~~~d~~e~~~~~~~E 233 (256)
T PF14932_consen 156 SGQQQNPPVFLSQMPLEQYLSQEEQFTKYLTSYTKKQFFQGISELV--ESSNEDNFQLLDISNPSIRGDEEEVLEERRSE 233 (256)
T ss_pred ccccCCCCchhhhCCHHHHHHHHHHHHHHHHHHHHHhcccccchhh--ccccchhhHHhhccccccccchHHHHHHHHHH
Confidence 32 3344999999988766 89999999999 78889999999977777764555555666669
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHH
Q 008617 212 LQRLRSVFGTSERQWVEAQVENA 234 (559)
Q Consensus 212 l~RLq~ay~~aq~Q~I~a~a~~~ 234 (559)
|+|||+||+||+||||.|+|+++
T Consensus 234 L~rLq~~~~~aq~q~I~~ka~~~ 256 (256)
T PF14932_consen 234 LARLQSAYICAQHQLIQAKAEVA 256 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999874
No 2
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=84.34 E-value=32 Score=36.63 Aligned_cols=83 Identities=19% Similarity=0.284 Sum_probs=47.0
Q ss_pred CCccchHHHH--hccCCCCCCCCHHHHhHHHHHHHcccccccccHHHHHhHhccccCCCcchhhhhcchhhHHHHHHHHH
Q 008617 33 DDARPILDWI--CSSLRPSNVLSLSELSQFEQFLQEEKLLEGEDLESAFDSISAFSSRRDDQEAVFGSEEGLKDIREATQ 110 (559)
Q Consensus 33 ~e~~~FL~Wf--C~~V~~~NVLS~~EL~~f~~L~~sGkiLEg~aLdeal~t~~~~~~~~~~~e~~~~~ee~le~lk~~~~ 110 (559)
+...-||++| |++--++.-=+-.++++...|... -+.||.=|-+-.+....++..+ .+-.+.+++.+.
T Consensus 38 ~~~~~~l~y~~Lc~~rv~qmtkty~Didavt~lLeE----kerDLelaA~iGqsLl~~N~~L------~~~~~~le~~L~ 107 (306)
T PF04849_consen 38 EQIEETLRYFLLCSDRVSQMTKTYNDIDAVTRLLEE----KERDLELAARIGQSLLEQNQDL------SERNEALEEQLG 107 (306)
T ss_pred HHHHHHHHHHHhcccchhhhhcchhhHHHHHHHHHH----HhhhHHHHHHHhHHHHHhcccH------HHHHHHHHHHHH
Confidence 3456789988 776555544478888888887655 2334444433222222222222 233566666666
Q ss_pred HHHHHHHHHHHHHHH
Q 008617 111 AYRDEAAQLQRQLRH 125 (559)
Q Consensus 111 ~L~~e~~~l~~~L~~ 125 (559)
.-+..+..++.+|..
T Consensus 108 ~~~e~v~qLrHeL~~ 122 (306)
T PF04849_consen 108 AALEQVEQLRHELSM 122 (306)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666665554
No 3
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=82.00 E-value=14 Score=35.65 Aligned_cols=107 Identities=20% Similarity=0.202 Sum_probs=70.7
Q ss_pred HHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccchhhhhHhhHHHHHHhHHHHHHHhhc
Q 008617 205 HHQRVSELQRLRSVFGTSERQWVEAQVENAKQQAILMTLKSQVASDEAYIHLDFHSLKRKHVELVGELSNLHHKEEKLLS 284 (559)
Q Consensus 205 ~e~r~~El~RLq~ay~~aq~Q~I~a~a~~~~~~a~L~~l~~~~~~~~~~~~~d~~~L~~ki~~l~~el~~L~~~i~~l~~ 284 (559)
.++|-.||.+|+..++.+=+.+-+.+-......+-+.+++..+...... +..++..+..+..+..+++.....+..
T Consensus 58 IeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~----~~~~r~~l~~~k~~r~k~~~~~~~l~~ 133 (177)
T PF13870_consen 58 IEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEE----LAKLREELYRVKKERDKLRKQNKKLRQ 133 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667779999999998888877777766666666667776665433211 235666666666666666666655544
Q ss_pred ccchhHHHHhhccccccccccchhhhhhhHHHHHHHHHHHHHH
Q 008617 285 ETIPDLCWELAQLQDTYILQGDYDLKVMRQELYISRQKAFINH 327 (559)
Q Consensus 285 e~lP~l~~e~AqL~~~pIl~GD~dLkiaRQdyy~srQe~vin~ 327 (559)
+ ..+.++|-|--||+-. .+++...++.|.+|
T Consensus 134 ~---------~~~~~~P~ll~Dy~~~---~~~~~~l~~~i~~l 164 (177)
T PF13870_consen 134 Q---------GGLLGVPALLRDYDKT---KEEVEELRKEIKEL 164 (177)
T ss_pred h---------cCCCCCcHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 4 6678999999999544 44444445555443
No 4
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=72.68 E-value=48 Score=34.37 Aligned_cols=9 Identities=33% Similarity=0.375 Sum_probs=5.3
Q ss_pred HHHHHHHHH
Q 008617 338 LRLACHLEK 346 (559)
Q Consensus 338 L~La~elE~ 346 (559)
++|++++|.
T Consensus 291 ~K~~Ld~EI 299 (312)
T PF00038_consen 291 VKLALDAEI 299 (312)
T ss_dssp HHHHHHHHH
T ss_pred HHHhHHHHH
Confidence 456666665
No 5
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=60.20 E-value=4.2e+02 Score=32.89 Aligned_cols=62 Identities=35% Similarity=0.453 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCccccccccchhhhhHhhHHHHHHhHHHHHHHhhcccchhHHHHhhcccc
Q 008617 227 VEAQVENAKQQAILMTLKSQVASDEAYIHLDFHSLKRKHVELVGELSNLHHKEEKLLSETIPDLCWELAQLQD 299 (559)
Q Consensus 227 I~a~a~~~~~~a~L~~l~~~~~~~~~~~~~d~~~L~~ki~~l~~el~~L~~~i~~l~~e~lP~l~~e~AqL~~ 299 (559)
..+.-++-..-+.|+-+++- +++.+..|+.++.++-.+|+.+++.+-.. +-.+.+.+|++.+
T Consensus 375 lkllLEnrrlt~tleelqss----------s~Ee~~SK~leleke~KnLs~k~e~Leer-i~ql~qq~~eled 436 (1195)
T KOG4643|consen 375 LKLLLENRRLTGTLEELQSS----------SYEELISKHLELEKEHKNLSKKHEILEER-INQLLQQLAELED 436 (1195)
T ss_pred HHHHHHhHHHHHHHHHHhhh----------hHHHHHHHHHHHHHHhHhHhHHHHHHHHH-HHHHHHHHHHHHH
Confidence 34444555555666666532 25788888889988888788777766655 6666666666654
No 6
>PRK11637 AmiB activator; Provisional
Probab=58.94 E-value=2.8e+02 Score=30.45 Aligned_cols=81 Identities=9% Similarity=0.092 Sum_probs=40.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccchhhhhHhhHHHHHHhHHHHHHHhhcccchhH
Q 008617 211 ELQRLRSVFGTSERQWVEAQVENAKQQAILMTLKSQVASDEAYIHLDFHSLKRKHVELVGELSNLHHKEEKLLSETIPDL 290 (559)
Q Consensus 211 El~RLq~ay~~aq~Q~I~a~a~~~~~~a~L~~l~~~~~~~~~~~~~d~~~L~~ki~~l~~el~~L~~~i~~l~~e~lP~l 290 (559)
++..++.-..-.+.+.-.+..+...+..-+..+..++...+ .++..+..+|..+..+|..++.+++..... +=..
T Consensus 55 qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~----~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~-l~~r 129 (428)
T PRK11637 55 DIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQ----NTLNQLNKQIDELNASIAKLEQQQAAQERL-LAAQ 129 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 55555544444445555555555555554444444443221 223456666666666666666666554443 3334
Q ss_pred HHHhhc
Q 008617 291 CWELAQ 296 (559)
Q Consensus 291 ~~e~Aq 296 (559)
++...+
T Consensus 130 lra~Y~ 135 (428)
T PRK11637 130 LDAAFR 135 (428)
T ss_pred HHHHHH
Confidence 444333
No 7
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=48.76 E-value=3.2e+02 Score=28.59 Aligned_cols=43 Identities=19% Similarity=0.229 Sum_probs=29.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhh
Q 008617 99 EEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLM 141 (559)
Q Consensus 99 ee~le~lk~~~~~L~~e~~~l~~~L~~lq~~~d~l~~~~~~L~ 141 (559)
..+-+.+..+...|++-..+....+..|+.|++-+.+...+..
T Consensus 59 ~~~~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~ 101 (258)
T PF15397_consen 59 YSNHKQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQ 101 (258)
T ss_pred ccChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3345666777777777777777788887777777766554433
No 8
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=48.05 E-value=3e+02 Score=32.80 Aligned_cols=39 Identities=15% Similarity=0.196 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHh
Q 008617 102 LKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTL 140 (559)
Q Consensus 102 le~lk~~~~~L~~e~~~l~~~L~~lq~~~d~l~~~~~~L 140 (559)
+++|++.+.....|+..+.+.|+..|.+++.-.+.++..
T Consensus 267 iqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q 305 (717)
T PF09730_consen 267 IQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQ 305 (717)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999888877766555443
No 9
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=44.25 E-value=2.5e+02 Score=30.55 Aligned_cols=114 Identities=18% Similarity=0.327 Sum_probs=67.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhc-CCcchhhhHHHHHHHHHHHHHhhhccCCCCCCccCChhhhHHHHHHHHHH-----
Q 008617 424 PGIVQQISGLRADLTALQSDLENS-LPGDRNRCINELCTLIQSLQQLLFASSTTAQPILTPRPLMKELDEMEKIN----- 497 (559)
Q Consensus 424 ~~L~~~~~~L~~dl~~lq~~L~~~-~~e~~~~~i~~L~~~~~~l~qll~~~st~~qp~Lt~~eL~~~l~~le~l~----- 497 (559)
+++......|..++..+...-... .....+.-|++||..+..++.+ .=.=|.+.+-|-.|..++
T Consensus 264 d~i~~rl~~L~~~~~~l~~~~~~~~~~~~~e~KI~eLy~~l~~~~~~----------~~~lP~lv~RL~tL~~lH~~a~~ 333 (388)
T PF04912_consen 264 DSIERRLKSLLSELEELAEKRKEAKEDAEQESKIDELYEILPRWDPY----------APSLPSLVERLKTLKSLHEEAAE 333 (388)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHH----------hhhhhHHHHHHHHHHHHHHHHHH
Confidence 677777777777776665433322 1112234478888877776665 111244444444444443
Q ss_pred -----HHHHHHHHHHHHHHHhHHHhhhcCChhhhhhhhhhhhccCCchHHHHHHHHHHHHHhhhc
Q 008617 498 -----AKLSVAVEEVTLEHCKKNEIIKHHSQEVGLQRRVFVDFFCNPERLRSQVRELTARVRALQ 557 (559)
Q Consensus 498 -----~~L~~~l~dv~~d~~~Krk~L~~~~~~~~~ER~LyV~Ff~dp~~Lk~~Ve~Le~r~~a~~ 557 (559)
..|...+.++...++.=...|.. +|.. |=.|-..+.+.|+.|+.|+.+||
T Consensus 334 ~~~~l~~le~~q~~l~~~l~~~~~~L~~------ve~~----~~~N~~~i~~n~~~le~Ri~~L~ 388 (388)
T PF04912_consen 334 FSQTLSELESQQSDLQSQLKKWEELLNK------VEEK----FKENMETIEKNVKKLEERIAKLQ 388 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH----HHHHHHHHHHHHHHHHHHHhccC
Confidence 34455555555555454455543 2222 78889999999999999999875
No 10
>cd08776 DED_Caspase-like_repeat1 Death effector domain, repeat 1, of initator caspase-like proteins. Death Effector Domain (DED), first repeat, found in initator caspase-like proteins, like caspase-8 and -10 and c-FLIP. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-8 and -10 are the initiators of death receptor mediated apoptosis. Together with FADD and the pseudo-caspase c-FLIP, they form the death-inducing signaling complex (DISC), whose formation is triggered by the activation of type 1 tumor necrosis factor (TNF) receptors such as Fas, TNF receptor 1, and TRAIL receptor. Caspase-8 and -10 also play important functions in cell adhesion and motility. c-FLIP is a catalytically inactive homolog of the initator procaspases-8 and -10. It negatively influences apoptotic signaling by interfering with the efficient formation of DI
Probab=43.65 E-value=27 Score=29.42 Aligned_cols=51 Identities=14% Similarity=0.162 Sum_probs=39.9
Q ss_pred ccchHHHHhccCCCCCCCCHHHHhHHHHHHHcccccccccHHHHHhHhccccC
Q 008617 35 ARPILDWICSSLRPSNVLSLSELSQFEQFLQEEKLLEGEDLESAFDSISAFSS 87 (559)
Q Consensus 35 ~~~FL~WfC~~V~~~NVLS~~EL~~f~~L~~sGkiLEg~aLdeal~t~~~~~~ 87 (559)
...=++|+|.-+=|.+.+-. =..+|..|...|+| .-.-|.|.|-.|+..|+
T Consensus 16 e~~~lkFLC~d~ip~~~le~-~~~lf~~L~e~~~L-~~~fL~ElL~~I~R~DL 66 (71)
T cd08776 16 EREVLLFLLNVFIPQPTLAQ-LIGALRALKEEGRL-TLPLLAECLYRAGRRDL 66 (71)
T ss_pred HHHHHHHHcccccccccchh-HHHHHHHHHHcCCC-CHHHHHHHHHHhCHHHH
Confidence 34568999999888777754 56679999999998 33668999999887554
No 11
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=41.50 E-value=1e+03 Score=31.74 Aligned_cols=30 Identities=10% Similarity=0.177 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhhhc
Q 008617 491 DEMEKINAKLSVAVEEVTLEHCKKNEIIKH 520 (559)
Q Consensus 491 ~~le~l~~~L~~~l~dv~~d~~~Krk~L~~ 520 (559)
..|.+.-.+..+++.+...+...|+++|+.
T Consensus 1077 ~~Lk~~~~~~~~~l~e~~~~w~E~~~~Leq 1106 (1822)
T KOG4674|consen 1077 LKLKKSRESRHALLSEQERDWSEKEDALEQ 1106 (1822)
T ss_pred HHHHhhHHHHHhHHhhcccchHHHHHHHHH
Confidence 333334445566666666666666666654
No 12
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=41.02 E-value=1.4e+02 Score=27.98 Aligned_cols=58 Identities=16% Similarity=0.111 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhh
Q 008617 323 AFINHLINQLARHQFLRLACHLEKRNMLAAYSLLKVIESELQGYLSATKSRVGRCLAL 380 (559)
Q Consensus 323 ~vin~Li~Q~Ar~elL~La~elE~r~~~~~~~lL~~i~~eL~~~~s~~~~Rl~~~~~l 380 (559)
-|+++|=.++++||-=+.+-++|+..|+.--..|+.=...++.-...+..|+.||--.
T Consensus 4 GVl~fLQ~Ew~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~a 61 (134)
T PF08232_consen 4 GVLHFLQTEWHRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYA 61 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999999999999999999998888889999999999986655
No 13
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=36.34 E-value=1.8e+02 Score=27.64 Aligned_cols=56 Identities=30% Similarity=0.338 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCccccccccchhhhhHhhHHHHHHhHHHHHHHhhcccch
Q 008617 224 RQWVEAQVENAKQQAILMTLKSQVASDEAYIHLDFHSLKRKHVELVGELSNLHHKEEKLLSETIP 288 (559)
Q Consensus 224 ~Q~I~a~a~~~~~~a~L~~l~~~~~~~~~~~~~d~~~L~~ki~~l~~el~~L~~~i~~l~~e~lP 288 (559)
-++...+.+++.+.+-|..|.+...- +.|...|..+..++..++..++.+.+..-|
T Consensus 86 ~el~~l~~~~k~l~~eL~~L~~~~t~---------~el~~~i~~l~~e~~~l~~kL~~l~~~~~~ 141 (169)
T PF07106_consen 86 EELAELKKEVKSLEAELASLSSEPTN---------EELREEIEELEEEIEELEEKLEKLRSGSKP 141 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCH---------HHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 67778888888888888888755542 468999999999999999999999887544
No 14
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=35.52 E-value=7.1e+02 Score=30.80 Aligned_cols=130 Identities=16% Similarity=0.181 Sum_probs=62.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhhhhccccCCCCCCcchhHHHHHHHhcCCCCcccccccccCh
Q 008617 344 LEKRNMLAAYSLLKVIESELQGYLSATKSRVGRCLALIEAASDVQEQGAVDDRDTFLHGVRDLLSIHSNAQAGLSTYVSA 423 (559)
Q Consensus 344 lE~r~~~~~~~lL~~i~~eL~~~~s~~~~Rl~~~~~lsq~~~~~~~~~~Id~rD~~~~rL~~lL~~~~~~q~~f~ty~s~ 423 (559)
+|+-+|+--.+++..+.+.+.+....++.++.+-.-- +. -.++.+| |.-..|..+...=++ .|.. -
T Consensus 255 ~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e---~k-----eaqe~ke----~~k~emad~ad~iEm-aTld-K 320 (1243)
T KOG0971|consen 255 KELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKE---AK-----EAQEAKE----RYKEEMADTADAIEM-ATLD-K 320 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-----HHHHHHH----HHHHHHHHHHHHHHH-HHhh-H
Confidence 4555566666666666666666666666666541111 00 0111111 111222211111111 1211 0
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhcCCcchhhhHHHHHHHHHHHHHhhhccCCCCCCccCChhhhHHHHHHHHHHHHHHHH
Q 008617 424 PGIVQQISGLRADLTALQSDLENSLPGDRNRCINELCTLIQSLQQLLFASSTTAQPILTPRPLMKELDEMEKINAKLSVA 503 (559)
Q Consensus 424 ~~L~~~~~~L~~dl~~lq~~L~~~~~e~~~~~i~~L~~~~~~l~qll~~~st~~qp~Lt~~eL~~~l~~le~l~~~L~~~ 503 (559)
+=-++.+..|++|+-+++.. +++|.+...-|.--|-.. +...|..++- +|-++|-.|..|.++
T Consensus 321 EmAEERaesLQ~eve~lkEr------------~deletdlEILKaEmeek-G~~~~~~ss~----qfkqlEqqN~rLKda 383 (1243)
T KOG0971|consen 321 EMAEERAESLQQEVEALKER------------VDELETDLEILKAEMEEK-GSDGQAASSY----QFKQLEQQNARLKDA 383 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHhc-CCCCcccchH----HHHHHHHHHHHHHHH
Confidence 12257888999999888743 455555544443332211 2222334433 677777777776665
Q ss_pred H
Q 008617 504 V 504 (559)
Q Consensus 504 l 504 (559)
+
T Consensus 384 l 384 (1243)
T KOG0971|consen 384 L 384 (1243)
T ss_pred H
Confidence 5
No 15
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=35.06 E-value=2.5e+02 Score=29.36 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=19.3
Q ss_pred hhccCCchHHHHHHHHHHHHHhhhcc
Q 008617 533 VDFFCNPERLRSQVRELTARVRALQV 558 (559)
Q Consensus 533 V~Ff~dp~~Lk~~Ve~Le~r~~a~~~ 558 (559)
+-|=..-+.|+..|..|.+.|++|+.
T Consensus 196 ~~~re~i~el~e~I~~L~~eV~~L~~ 221 (258)
T PF15397_consen 196 VQFREEIDELEEEIPQLRAEVEQLQA 221 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555678888888888888888753
No 16
>PF03801 Ndc80_HEC: HEC/Ndc80p family; InterPro: IPR005550 Members of this family are components of the mitotic spindle. It has been shown that Ndc80 from yeast is part of a complex called the Ndc80p complex []. This complex is thought to bind to the microtubules of the spindle.; PDB: 3IZ0_E 2VE7_B 2IGP_A.
Probab=33.60 E-value=17 Score=34.78 Aligned_cols=39 Identities=21% Similarity=0.243 Sum_probs=24.2
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCcccC--CCCC----ccchHHHHhccCC
Q 008617 5 RLCALLCELGYGGADSLDPDSFEWPF--QYDD----ARPILDWICSSLR 47 (559)
Q Consensus 5 ~fve~L~~lgyp~a~~L~~edfdWLF--~~~e----~~~FL~WfC~~V~ 47 (559)
++...||.||||.+ +++. .||. ..+- ....|.|+|.-+.
T Consensus 96 ev~~~lK~L~YP~~-~isK---S~L~a~gs~hsWP~lL~~L~WLv~l~~ 140 (157)
T PF03801_consen 96 EVPFLLKALGYPFA-TISK---SSLQAPGSPHSWPHLLGALHWLVELIK 140 (157)
T ss_dssp HHHHHHHHTT-SS-----H---HHHHSTTSTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcc-ccCH---HHccCCCCcccHHHHHHHHHHHHHHHH
Confidence 67889999999998 8887 5666 2222 3457899997543
No 17
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=33.39 E-value=5.1e+02 Score=25.99 Aligned_cols=92 Identities=16% Similarity=0.112 Sum_probs=63.3
Q ss_pred ccchhHHHHhhccccccccccchhhhhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 008617 285 ETIPDLCWELAQLQDTYILQGDYDLKVMRQELYISRQKAFINHLINQLA----RHQFLRLACHLEKRNMLAAYSLLKVIE 360 (559)
Q Consensus 285 e~lP~l~~e~AqL~~~pIl~GD~dLkiaRQdyy~srQe~vin~Li~Q~A----r~elL~La~elE~r~~~~~~~lL~~i~ 360 (559)
.++-++-++....-+.+-...-|.-+++-.+-.+..|+..=..++.|++ ||.-+-.=++-|.|+|......=..++
T Consensus 57 dp~~ALqRD~~~~~~~~~~~~v~~~pl~~Le~l~~~qk~~q~Rm~~qL~~aE~rhrr~i~eLe~EKrkh~~~~aqgDD~t 136 (192)
T PF09727_consen 57 DPFLALQRDSEAAGGEKEEEDVYENPLAELEKLMEHQKKMQRRMLEQLAAAEKRHRRTIQELEEEKRKHAEDMAQGDDFT 136 (192)
T ss_pred cHHHHHHhHHHhcCCCCccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH
Confidence 3444455554333333333333777788888888888877766777755 777777777888889988888888888
Q ss_pred HHHhhhHHHHHHHhhh
Q 008617 361 SELQGYLSATKSRVGR 376 (559)
Q Consensus 361 ~eL~~~~s~~~~Rl~~ 376 (559)
.-|++.-..+.+-++.
T Consensus 137 ~lLEkEReRLkq~lE~ 152 (192)
T PF09727_consen 137 NLLEKERERLKQQLEQ 152 (192)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7787777777776664
No 18
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=32.92 E-value=64 Score=36.19 Aligned_cols=85 Identities=24% Similarity=0.247 Sum_probs=57.9
Q ss_pred CCCCHHHHhHHHHHHHccccc---------ccccHHHHHhHhccccCCCcchhhhhcchhhHHHHHHHHHHHHHHHHHHH
Q 008617 50 NVLSLSELSQFEQFLQEEKLL---------EGEDLESAFDSISAFSSRRDDQEAVFGSEEGLKDIREATQAYRDEAAQLQ 120 (559)
Q Consensus 50 NVLS~~EL~~f~~L~~sGkiL---------Eg~aLdeal~t~~~~~~~~~~~e~~~~~ee~le~lk~~~~~L~~e~~~l~ 120 (559)
=||+++|.. -|.++|-.| |+.+|-.+=..|.. |...||-.=...||++-|+....+..+++..|+
T Consensus 219 L~LteeEkr---LL~kEG~slPs~lPLTKaEEriLKrvRRKIrN---K~SAQESRrkKkeYid~LE~rv~~~taeNqeL~ 292 (472)
T KOG0709|consen 219 LVLTEEEKR---LLTKEGYSLPSKLPLTKAEERILKRVRRKIRN---KRSAQESRRKKKEYIDGLESRVSAFTAENQELQ 292 (472)
T ss_pred eeccHHHHH---HHHhccCcCcccCCchHHHHHHHHHHHHHHHh---hhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHH
Confidence 477888875 678888733 66666666555553 223333333356788999999999999999999
Q ss_pred HHHHHHhhhhhhhHHHHHHh
Q 008617 121 RQLRHLQCQFDMLTAHASTL 140 (559)
Q Consensus 121 ~~L~~lq~~~d~l~~~~~~L 140 (559)
++...|+.+--.|.++.++|
T Consensus 293 kkV~~Le~~N~sLl~qL~kl 312 (472)
T KOG0709|consen 293 KKVEELELSNRSLLAQLKKL 312 (472)
T ss_pred HHHHHHhhccHHHHHHHHHH
Confidence 98888877755555555443
No 19
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=31.25 E-value=6.6e+02 Score=26.64 Aligned_cols=33 Identities=18% Similarity=0.146 Sum_probs=21.7
Q ss_pred chhhhhHhhHHHHHHhHHHHHHHhhcccchhHHHHhh
Q 008617 259 HSLKRKHVELVGELSNLHHKEEKLLSETIPDLCWELA 295 (559)
Q Consensus 259 ~~L~~ki~~l~~el~~L~~~i~~l~~e~lP~l~~e~A 295 (559)
..|..+|++.+.-+..++.++ ... -|++.++..
T Consensus 78 ~EL~~~I~egr~~~~~~E~~~---~~~-nPpLf~EY~ 110 (325)
T PF08317_consen 78 RELKKYISEGRQIFEEIEEET---YES-NPPLFREYY 110 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---hhc-CCHHHHHHH
Confidence 457777777777766666555 233 488998753
No 20
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=30.80 E-value=1.4e+03 Score=30.40 Aligned_cols=142 Identities=18% Similarity=0.197 Sum_probs=70.9
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccchhhhhHhhHHHHHHhHHHHHHHhhcccchhH
Q 008617 211 ELQRLRSVFGTSERQWVEAQVENAKQQAILMTLKSQVASDEAYIHLDFHSLKRKHVELVGELSNLHHKEEKLLSETIPDL 290 (559)
Q Consensus 211 El~RLq~ay~~aq~Q~I~a~a~~~~~~a~L~~l~~~~~~~~~~~~~d~~~L~~ki~~l~~el~~L~~~i~~l~~e~lP~l 290 (559)
++.+++..|+-.+-+|-.++..-.+..+.+.-+....+..+...-.-+..+..+|.+|..+.+.|..+|+.+-.. +|.
T Consensus 1061 ~l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~-~~~- 1138 (1822)
T KOG4674|consen 1061 KLIKLREEFAKCNDELLKLKKSRESRHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQ-SAV- 1138 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhh-
Confidence 666666666666666666666555555554443333222221111112344444555555555555555544332 111
Q ss_pred HHHhhccccccccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHH
Q 008617 291 CWELAQLQDTYILQGDYDLKVMRQELYISRQKAFINHLINQLARHQFLRLACHLEKRNMLAAYSLLKVIESELQGYLSAT 370 (559)
Q Consensus 291 ~~e~AqL~~~pIl~GD~dLkiaRQdyy~srQe~vin~Li~Q~Ar~elL~La~elE~r~~~~~~~lL~~i~~eL~~~~s~~ 370 (559)
+.+.--.-||-|| ..|+..|=+-+-.++==-=.+..|....+.-+..+..-+.+|+++++.-
T Consensus 1139 ------~n~S~~~~g~sdL------------~~iv~~LR~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~ 1200 (1822)
T KOG4674|consen 1139 ------SNLSAMLLGLSDL------------QNIVSFLRKEKEIAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAE 1200 (1822)
T ss_pred ------ccccccccchHHH------------HHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222233333322 2333344333322222223456778888888888888888888887765
Q ss_pred HH
Q 008617 371 KS 372 (559)
Q Consensus 371 ~~ 372 (559)
+.
T Consensus 1201 r~ 1202 (1822)
T KOG4674|consen 1201 RA 1202 (1822)
T ss_pred HH
Confidence 43
No 21
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=29.00 E-value=1.9e+02 Score=26.39 Aligned_cols=42 Identities=24% Similarity=0.294 Sum_probs=32.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHh
Q 008617 99 EEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTL 140 (559)
Q Consensus 99 ee~le~lk~~~~~L~~e~~~l~~~L~~lq~~~d~l~~~~~~L 140 (559)
+.++++.|.+++.|-++...|.+.++.|+.+.+.++.....|
T Consensus 22 e~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eL 63 (107)
T PF09304_consen 22 ERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAEL 63 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888999999998888888888888877766666555433
No 22
>PF00573 Ribosomal_L4: Ribosomal protein L4/L1 family; InterPro: IPR002136 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes ribosomal L4/L1 from eukaryotes and plants and L4 from bacteria. L4 from yeast has been shown to bind rRNA []. These proteins have 246 (plant) to 427 (human) amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3IZR_D 1VSA_D 3D5D_F 3MS1_E 3F1F_F 3PYO_E 3MRZ_E 3F1H_F 3PYR_E 1VSP_D ....
Probab=28.23 E-value=21 Score=35.28 Aligned_cols=65 Identities=22% Similarity=0.292 Sum_probs=49.3
Q ss_pred hHHHHHHHhcCCCCCCCCCCCCCcccCCCCCccchHHHHhccCCCCCCCCHHHHhHHHHHHHccc-ccccccHHH
Q 008617 4 ARLCALLCELGYGGADSLDPDSFEWPFQYDDARPILDWICSSLRPSNVLSLSELSQFEQFLQEEK-LLEGEDLES 77 (559)
Q Consensus 4 ~~fve~L~~lgyp~a~~L~~edfdWLF~~~e~~~FL~WfC~~V~~~NVLS~~EL~~f~~L~~sGk-iLEg~aLde 77 (559)
++|++.|+.+|. ..=.+||=.++....+.+-|.|+..-+|++.++|..|+-| +.++ +++-+||+.
T Consensus 123 k~~~~~L~~~~~--------~~~~~L~V~~~~~~~~~~a~rNl~~v~~~~~~~lnv~dll-~~~~lv~t~~Al~~ 188 (192)
T PF00573_consen 123 KDLVKLLKKLGL--------KGKSVLFVVGEENENLFRASRNLPGVDVLPVEGLNVYDLL-KADKLVITKSALEK 188 (192)
T ss_dssp HHHHHHHHHTTT--------SSSSEEEEESSTSHCHHHHHCTSTTEEEEESTG--HHHHC-HSSEEEEEHHHHHH
T ss_pred HHHHHHHHHhhh--------cccceEEEecCCchHHHHHHHccCCeEEEecCcEeHHHHh-CCCcEEEEHHHHHH
Confidence 578999999988 2335788444556688899999999999999999999866 6667 688877764
No 23
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=27.83 E-value=5.2e+02 Score=30.83 Aligned_cols=151 Identities=17% Similarity=0.218 Sum_probs=0.0
Q ss_pred ccccCCCCCCcchhHHHHHHHhcCC---------CCcccccccccChhhHHHHHHHHHHH----HHHHHHhhhhcCCc--
Q 008617 386 DVQEQGAVDDRDTFLHGVRDLLSIH---------SNAQAGLSTYVSAPGIVQQISGLRAD----LTALQSDLENSLPG-- 450 (559)
Q Consensus 386 ~~~~~~~Id~rD~~~~rL~~lL~~~---------~~~q~~f~ty~s~~~L~~~~~~L~~d----l~~lq~~L~~~~~e-- 450 (559)
++.++...+.+++|...+..+|.+. +++.....+-++..-|.+++..|..+ ....+.+++-....
T Consensus 492 ~~~~~~l~~~~~sF~~~Ik~lL~r~~~qPill~s~~k~~~p~~~E~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk 571 (717)
T PF10168_consen 492 ESPLKPLAESPPSFEKHIKSLLQRSSSQPILLKSSDKSSSPSPQECLELLSQATKVLREEYIEKQDLAREEIQRRVKLLK 571 (717)
T ss_pred cccccccccccchHHHHHHHHhcCCCCCCeecCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -chhhhHHHHHHHHHHHHHhhhccCCCCCCccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCChhhhhhh
Q 008617 451 -DRNRCINELCTLIQSLQQLLFASSTTAQPILTPRPLMKELDEMEKINAKLSVAVEEVTLEHCKKNEIIKHHSQEVGLQR 529 (559)
Q Consensus 451 -~~~~~i~~L~~~~~~l~qll~~~st~~qp~Lt~~eL~~~l~~le~l~~~L~~~l~dv~~d~~~Krk~L~~~~~~~~~ER 529 (559)
+.++-..+|+.+.+..+.+ .=+...|.+.+++...-...|..-+..|+ +..-.+-|.+-..||
T Consensus 572 ~~~e~Ql~~L~~l~e~~~~l----------~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl------~~l~~~~P~LS~AEr 635 (717)
T PF10168_consen 572 QQKEQQLKELQELQEERKSL----------RESAEKLAERYEEAKDKQEKLMKRVDRVL------QLLNSQLPVLSEAER 635 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhccCCCCCHHHH
Q ss_pred hhhhhccCCchHHHHHHHHHHHHHhhh
Q 008617 530 RVFVDFFCNPERLRSQVRELTARVRAL 556 (559)
Q Consensus 530 ~LyV~Ff~dp~~Lk~~Ve~Le~r~~a~ 556 (559)
+ |+..=+++++.++.|.++++.+
T Consensus 636 ~----~~~EL~~~~~~l~~l~~si~~l 658 (717)
T PF10168_consen 636 E----FKKELERMKDQLQDLKASIEQL 658 (717)
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHH
No 24
>PRK10884 SH3 domain-containing protein; Provisional
Probab=27.42 E-value=4.6e+02 Score=26.39 Aligned_cols=72 Identities=17% Similarity=0.223 Sum_probs=45.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhcCCcchhhhHHHHHHHHHHHHHhhhccCCCCCCccCChhhhHHHHHHHHHHHHHHHH
Q 008617 424 PGIVQQISGLRADLTALQSDLENSLPGDRNRCINELCTLIQSLQQLLFASSTTAQPILTPRPLMKELDEMEKINAKLSVA 503 (559)
Q Consensus 424 ~~L~~~~~~L~~dl~~lq~~L~~~~~e~~~~~i~~L~~~~~~l~qll~~~st~~qp~Lt~~eL~~~l~~le~l~~~L~~~ 503 (559)
+.+..+..+|++++..++++|++... +.+....++..-+...++ .+.+|+.-|+.|..-
T Consensus 89 p~~~~rlp~le~el~~l~~~l~~~~~-~~~~~~~~l~~~~~~~~~--------------------~~~~L~~~n~~L~~~ 147 (206)
T PRK10884 89 PSLRTRVPDLENQVKTLTDKLNNIDN-TWNQRTAEMQQKVAQSDS--------------------VINGLKEENQKLKNQ 147 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHH
Confidence 56678888999999999998887643 222323343333333222 345577778888777
Q ss_pred HHHHHHHHHhHHHhhhc
Q 008617 504 VEEVTLEHCKKNEIIKH 520 (559)
Q Consensus 504 l~dv~~d~~~Krk~L~~ 520 (559)
+.... +|...|+.
T Consensus 148 l~~~~----~~~~~l~~ 160 (206)
T PRK10884 148 LIVAQ----KKVDAANL 160 (206)
T ss_pred HHHHH----HHHHHHHH
Confidence 77766 55555543
No 25
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=27.01 E-value=2.8e+02 Score=24.78 Aligned_cols=52 Identities=21% Similarity=0.247 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHhhccCccccccccchhhhhHhhHHHHHHhHHHHHHHhhc
Q 008617 231 VENAKQQAILMTLKSQVASDEAYIHLDFHSLKRKHVELVGELSNLHHKEEKLLS 284 (559)
Q Consensus 231 a~~~~~~a~L~~l~~~~~~~~~~~~~d~~~L~~ki~~l~~el~~L~~~i~~l~~ 284 (559)
........-+..+..++.+.- -+.|+|.|+..+.++++++..++.++..+.+
T Consensus 42 ~~~~~~~~Rl~~lE~~l~~LP--t~~dv~~L~l~l~el~G~~~~l~~~l~~v~~ 93 (106)
T PF10805_consen 42 ERLDEHDRRLQALETKLEHLP--TRDDVHDLQLELAELRGELKELSARLQGVSH 93 (106)
T ss_pred HHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 333344556666666665442 2478999999999999999999998887643
No 26
>PRK09039 hypothetical protein; Validated
Probab=26.50 E-value=2.6e+02 Score=30.06 Aligned_cols=38 Identities=18% Similarity=0.092 Sum_probs=30.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008617 211 ELQRLRSVFGTSERQWVEAQVENAKQQAILMTLKSQVA 248 (559)
Q Consensus 211 El~RLq~ay~~aq~Q~I~a~a~~~~~~a~L~~l~~~~~ 248 (559)
+|...+..|.=++.+++.++.+.+.+++-|..+...+.
T Consensus 124 ~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~ 161 (343)
T PRK09039 124 ELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALD 161 (343)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888988888888888888888777777765553
No 27
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=26.13 E-value=57 Score=25.40 Aligned_cols=19 Identities=42% Similarity=0.576 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHHhhhcc
Q 008617 540 ERLRSQVRELTARVRALQV 558 (559)
Q Consensus 540 ~~Lk~~Ve~Le~r~~a~~~ 558 (559)
+-|+.+|+.|+.|++.||.
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~ 20 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQA 20 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999864
No 28
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=26.01 E-value=5.8e+02 Score=26.39 Aligned_cols=110 Identities=14% Similarity=0.047 Sum_probs=80.4
Q ss_pred chhhhhHhhHHHHHHhHHHHHHHhhcc-cchhHHHHhhccccc------------------cccccchhhhhhhHHHHHH
Q 008617 259 HSLKRKHVELVGELSNLHHKEEKLLSE-TIPDLCWELAQLQDT------------------YILQGDYDLKVMRQELYIS 319 (559)
Q Consensus 259 ~~L~~ki~~l~~el~~L~~~i~~l~~e-~lP~l~~e~AqL~~~------------------pIl~GD~dLkiaRQdyy~s 319 (559)
.++..++.+.+.=+.+||.++..+... ....-..+.|.+... .|+.| .
T Consensus 9 ~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~-------------~ 75 (248)
T PF08172_consen 9 SELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGG-------------G 75 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCC-------------C
Confidence 456666777777778888888888755 222222222222111 12223 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhh
Q 008617 320 RQKAFINHLINQLARHQFLRLACHLEKRNMLAAYSLLKVIESELQGYLSATKSRVGRCLALI 381 (559)
Q Consensus 320 rQe~vin~Li~Q~Ar~elL~La~elE~r~~~~~~~lL~~i~~eL~~~~s~~~~Rl~~~~~ls 381 (559)
--.-++.-+..|.=||.-=..-+|-|+++.......|+.=+..|+..+..+-.++-.+....
T Consensus 76 ~~~siLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY~ 137 (248)
T PF08172_consen 76 GDSSILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQSYN 137 (248)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 45677888999999999999999999999999999999999999999999999998766554
No 29
>cd08337 DED_c-FLIP_repeat1 Death Effector Domain, repeat 1, of cellular FLICE-Inhibitory Protein. Death Effector Domain (DED), repeat 1, similar to that found in FLICE-inhibitory protein (c-FLIP/CASH, also known as Casper/iFLICE/FLAME-1/CLARP/MRIT/usurpin). c-FLIP is a catalytically inactive homolog of the initator procaspases-8 and -10. It negatively influences apoptotic signaling by interfering with the efficient formation of the Death Inducing Signalling Complex (DISC). At low levels, c-FLIP has been shown to enhance apoptotic signaling by allosterically activating caspase-8. As a modulator of the initiator caspases, c-FLIP regulates life and death in various types of cells and tissues. All members contain two N-terminal DEDs and a C-terminal pseudo-caspase domain. DEDs comprise a subfamily of the Death Domain (DD) superfamily. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association
Probab=25.96 E-value=62 Score=27.90 Aligned_cols=51 Identities=14% Similarity=0.236 Sum_probs=40.2
Q ss_pred ccchHHHHhccCCCCCCCCHHHHhHHHHHHHcccccccccHHHHHhHhccccC
Q 008617 35 ARPILDWICSSLRPSNVLSLSELSQFEQFLQEEKLLEGEDLESAFDSISAFSS 87 (559)
Q Consensus 35 ~~~FL~WfC~~V~~~NVLS~~EL~~f~~L~~sGkiLEg~aLdeal~t~~~~~~ 87 (559)
....|.|+|.-+=|.+.+-.-. ..|..|...|++-.+ .|-|.|=.|+.+|+
T Consensus 17 E~e~L~FLC~D~ip~~~~e~~~-~l~~~L~e~~~L~~~-~L~ELLy~i~R~DL 67 (80)
T cd08337 17 EDELLLFLCRDAAPDCTTAQLR-DLLRALNERGKLTLA-ALAELLYRVKRFDL 67 (80)
T ss_pred HHHHHHHHcccccccccchhHH-HHHHHHHHcCCCCHH-HHHHHHHHHhHHHH
Confidence 4567899999998887764333 899999999986444 89999999998764
No 30
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=24.60 E-value=1.5e+03 Score=28.66 Aligned_cols=227 Identities=18% Similarity=0.197 Sum_probs=117.6
Q ss_pred HhHHHHHHHhhcccchhHHHHhhcccccccccc--chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhh
Q 008617 273 SNLHHKEEKLLSETIPDLCWELAQLQDTYILQG--DYDLKVMRQELYISRQKAFINHLINQLARHQFLRLAC--HLEKRN 348 (559)
Q Consensus 273 ~~L~~~i~~l~~e~lP~l~~e~AqL~~~pIl~G--D~dLkiaRQdyy~srQe~vin~Li~Q~Ar~elL~La~--elE~r~ 348 (559)
=.|+.....+.....+.+=+.+|. .|-=.. +|+...||+ +.+|=-+|.++|--|--++ .-.-| .+|.+.
T Consensus 972 PvLEeCl~aL~~nn~~~L~kaLA~---FP~d~qWSaFNs~EA~~---AK~QMDaIKqmIekKv~L~-~L~qCqdALeKqn 1044 (1439)
T PF12252_consen 972 PVLEECLNALRENNMDMLQKALAA---FPSDKQWSAFNSEEARQ---AKAQMDAIKQMIEKKVVLQ-ALTQCQDALEKQN 1044 (1439)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHh---CCCcccchhcCcHHHHH---HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhh
Confidence 334444445554444444444443 232222 677777887 4578889999999999888 33334 367888
Q ss_pred HHHHHHHHHH---------HHHHHhhhHHHHHHHhhhhhhhhhhhhccccCCCCCCcchhHHHHHHHhcCCC--------
Q 008617 349 MLAAYSLLKV---------IESELQGYLSATKSRVGRCLALIEAASDVQEQGAVDDRDTFLHGVRDLLSIHS-------- 411 (559)
Q Consensus 349 ~~~~~~lL~~---------i~~eL~~~~s~~~~Rl~~~~~lsq~~~~~~~~~~Id~rD~~~~rL~~lL~~~~-------- 411 (559)
.-++..-|++ |.++|.+.-..+.|.++.+ |.+. .-++|++-.-.--|--.++.+-+
T Consensus 1045 Ia~AL~ALn~IPSdKEms~Is~eLReQIq~~KQ~LesL----QRAV---~TPVvtd~eKvr~rYe~LI~~iTKrIt~LEk 1117 (1439)
T PF12252_consen 1045 IAGALQALNNIPSDKEMSKISSELREQIQSVKQDLESL----QRAV---VTPVVTDAEKVRVRYETLITDITKRITDLEK 1117 (1439)
T ss_pred HHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHHHH----HHhh---cccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888876 4556777777777775432 3222 23345444333333333333322
Q ss_pred CcccccccccChhhHHHHHHHHHHHHHHHHHhhhhcCCc--chh-hhHHHHHHHHHHHHHhhhcc---CCCCCCccCChh
Q 008617 412 NAQAGLSTYVSAPGIVQQISGLRADLTALQSDLENSLPG--DRN-RCINELCTLIQSLQQLLFAS---STTAQPILTPRP 485 (559)
Q Consensus 412 ~~q~~f~ty~s~~~L~~~~~~L~~dl~~lq~~L~~~~~e--~~~-~~i~~L~~~~~~l~qll~~~---st~~qp~Lt~~e 485 (559)
-+..-...| ..-..-...|++++..|+.+=.-.+-. +.+ ++|+.|...++.++.-||.. .++.|.---..+
T Consensus 1118 ~k~~~l~~i---kK~ia~lnnlqqElklLRnEK~Rmh~~~dkVDFSDIEkLE~qLq~~~~kL~dAyl~eitKqIsaLe~e 1194 (1439)
T PF12252_consen 1118 AKLDNLDSI---KKAIANLNNLQQELKLLRNEKIRMHSGTDKVDFSDIEKLEKQLQVIHTKLYDAYLVEITKQISALEKE 1194 (1439)
T ss_pred cccccHHHH---HHHHHHHHHHHHHHHHHHhHHHhhccCCCcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhh
Confidence 222222222 233344567888888888765544332 111 23445555555554443311 111111000011
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 008617 486 LMKELDEMEKINAKLSVAVEEVTLEHCKKNE 516 (559)
Q Consensus 486 L~~~l~~le~l~~~L~~~l~dv~~d~~~Krk 516 (559)
+-+.++.+.++-+.+.+.+.+|..=++.|.|
T Consensus 1195 ~PKnltdvK~missf~d~laeiE~LrnErIK 1225 (1439)
T PF12252_consen 1195 KPKNLTDVKSMISSFNDRLAEIEFLRNERIK 1225 (1439)
T ss_pred CCCchhhHHHHHHHHHhhhhHHHHHHHHHhh
Confidence 1122245555667777777777764554443
No 31
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=22.33 E-value=1.3e+03 Score=27.18 Aligned_cols=37 Identities=22% Similarity=0.320 Sum_probs=31.3
Q ss_pred HhcCCCCCCCCCCCCCcccCCCCCccchHHHHhccCCC
Q 008617 11 CELGYGGADSLDPDSFEWPFQYDDARPILDWICSSLRP 48 (559)
Q Consensus 11 ~~lgyp~a~~L~~edfdWLF~~~e~~~FL~WfC~~V~~ 48 (559)
+.+|||-+..=+++.|--||-+ ..-+..+++-.+|.+
T Consensus 12 eEmg~p~~~~P~~~~lrrlC~G-~~~~IWkfli~~V~s 48 (632)
T PF14817_consen 12 EEMGYPPASLPSDDYLRRLCRG-NMAPIWKFLIQHVRS 48 (632)
T ss_pred HHhCCCCCCCCCHHHHHHHhcc-CChHHHHHHHHHcCc
Confidence 4599999887788899999976 488999999988876
No 32
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=22.27 E-value=3.3e+02 Score=26.02 Aligned_cols=72 Identities=19% Similarity=0.357 Sum_probs=48.6
Q ss_pred HcccccccccHHHHHhHhc-cccCCCcchhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhh
Q 008617 65 QEEKLLEGEDLESAFDSIS-AFSSRRDDQEAVFGSEEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQG 143 (559)
Q Consensus 65 ~sGkiLEg~aLdeal~t~~-~~~~~~~~~e~~~~~ee~le~lk~~~~~L~~e~~~l~~~L~~lq~~~d~l~~~~~~L~~~ 143 (559)
.+|. ++.+++..+|+.+. .+..|.++. -..++.++....++.+|...++.+-.+.+.+.+.+-++....|+.
T Consensus 18 e~~~-~d~e~~~dtLe~i~~~~~~K~~~~------~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~~m~~ 90 (162)
T PF05565_consen 18 EEGD-LDEEAIADTLESIEDEIEEKADNI------AKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLDAMEA 90 (162)
T ss_pred hcCC-CCHHHHHHHHHHHHHHHHHHHHHH------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 66677777777655 343333333 335778888888888888888888888777777777777666655
No 33
>PRK10869 recombination and repair protein; Provisional
Probab=21.97 E-value=1.1e+03 Score=27.03 Aligned_cols=31 Identities=16% Similarity=0.088 Sum_probs=22.9
Q ss_pred HHhhHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 008617 205 HHQRVSELQRLRSVFGTSERQWVEAQVENAK 235 (559)
Q Consensus 205 ~e~r~~El~RLq~ay~~aq~Q~I~a~a~~~~ 235 (559)
.+.|...+.+|+.=|+.+=-+++.-..+...
T Consensus 301 ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~ 331 (553)
T PRK10869 301 LEQRLSKQISLARKHHVSPEELPQHHQQLLE 331 (553)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4778889999999999877776655544333
No 34
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=21.87 E-value=2.2e+02 Score=27.91 Aligned_cols=38 Identities=32% Similarity=0.420 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHh
Q 008617 103 KDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTL 140 (559)
Q Consensus 103 e~lk~~~~~L~~e~~~l~~~L~~lq~~~d~l~~~~~~L 140 (559)
++++..+...++.+..+++++..|++++..+.+...+|
T Consensus 133 ~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l 170 (194)
T PF08614_consen 133 KDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKL 170 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444555555555555554444443
No 35
>PF03634 TCP: TCP family transcription factor; InterPro: IPR005333 The TCP transcription factor family was named after: teosinte branched 1 (tb1, Zea mays (Maize)) [], cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) [] and PCF in rice (Oryza sativa) [, ]. The TCP proteins code for structurally related proteins implicated in the evolution of key morphological traits []. However, the biochemical function of CYC and TB1 proteins remains to be demonstrated. One of the conserved regions is predicted to form a non-canonical basic-Helix-Loop-Helix (bHLP) structure. This domain is also found in two rice DNA-binding proteins, PCF1 and PCF2, where it has been shown to be involved in DNA-binding and dimerization. This family of transcription factors are exclusive to higher plants. They can be divided into two groups, TCP-C and TCP-P, that appear to have separated following an early gene duplication event []. This duplication event may have led to functional divergence and it has been proposed that that the TCP-P subfamily are transcriptional repressors, while the TPC-C subfamily are transcription activators [].
Probab=21.45 E-value=36 Score=31.56 Aligned_cols=26 Identities=23% Similarity=0.455 Sum_probs=22.2
Q ss_pred hhHHHHHHHhcCCCCCCCCCCCCCcccCCC
Q 008617 3 GARLCALLCELGYGGADSLDPDSFEWPFQY 32 (559)
Q Consensus 3 G~~fve~L~~lgyp~a~~L~~edfdWLF~~ 32 (559)
..+|+..=..|||++++. -+||||.-
T Consensus 29 Ar~FFdLQDmLGfDKaSK----TveWLL~k 54 (138)
T PF03634_consen 29 ARKFFDLQDMLGFDKASK----TVEWLLTK 54 (138)
T ss_pred HHHHHHHHHHhcCCCCCc----hHHHHHHh
Confidence 568999999999999865 89999944
No 36
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=21.15 E-value=9.8e+02 Score=27.67 Aligned_cols=86 Identities=24% Similarity=0.163 Sum_probs=49.0
Q ss_pred chhhhhHhhHHHHHHhHHHHHHHhhcccchhHHHHhhcccccccccc-chhhhhhhHHH-------HHHHHHHHHHHHHH
Q 008617 259 HSLKRKHVELVGELSNLHHKEEKLLSETIPDLCWELAQLQDTYILQG-DYDLKVMRQEL-------YISRQKAFINHLIN 330 (559)
Q Consensus 259 ~~L~~ki~~l~~el~~L~~~i~~l~~e~lP~l~~e~AqL~~~pIl~G-D~dLkiaRQdy-------y~srQe~vin~Li~ 330 (559)
+.|+.|...+.+|.-.|+.+...|+.+++..-.|+. ++-++=|-+- |.+-|+.+-.- =.+||-+=+.+|+.
T Consensus 162 EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq-~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLls 240 (596)
T KOG4360|consen 162 EALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQ-QLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLS 240 (596)
T ss_pred HHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666667888888899999999999888888883 2221111110 22333332211 11455555677888
Q ss_pred HHHHH--HHHHHHHHHH
Q 008617 331 QLARH--QFLRLACHLE 345 (559)
Q Consensus 331 Q~Ar~--elL~La~elE 345 (559)
|.+.. ...-++.+-|
T Consensus 241 ql~d~qkk~k~~~~Eke 257 (596)
T KOG4360|consen 241 QLVDLQKKIKYLRHEKE 257 (596)
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 87743 3444444443
No 37
>PF12558 DUF3744: ATP-binding cassette cobalt transporter; InterPro: IPR022216 This domain family is found in bacteria, and is approximately 70 amino acids in length. The family is found in association with PF00005 from PFAM. There is a conserved REP sequence motif. There is a single completely conserved residue P that may be functionally important. The proteins in this family are frequently annotated as ABC Cobalt transporters however there is little accompanying literature to confirm this. ; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances
Probab=20.78 E-value=66 Score=26.96 Aligned_cols=44 Identities=11% Similarity=0.012 Sum_probs=35.5
Q ss_pred HHHHHHhcCCCCCCCCCCCCCcccCCCCCccchHHHHhccCCCC
Q 008617 6 LCALLCELGYGGADSLDPDSFEWPFQYDDARPILDWICSSLRPS 49 (559)
Q Consensus 6 fve~L~~lgyp~a~~L~~edfdWLF~~~e~~~FL~WfC~~V~~~ 49 (559)
.+.+||.+|+|-...-++.+++=+--.+-...+-.|+.....+.
T Consensus 15 YitALk~ag~~l~~~~~l~~l~~l~~~~~~~~l~~w~~~~~~~~ 58 (74)
T PF12558_consen 15 YITALKYAGVDLTKEDHLSDLDNLDLSDVKEKLQQWQDKQPPPK 58 (74)
T ss_pred HHHHHHHcCCCcccCCCccCHHHCCcHHHHHHHHHHHhccCCcc
Confidence 47899999999999999999998885556677789998555443
No 38
>KOG3958 consensus Putative dynamitin [Cytoskeleton]
Probab=20.26 E-value=1.1e+03 Score=25.46 Aligned_cols=116 Identities=14% Similarity=0.241 Sum_probs=68.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhcCC-cchhhhHHHHHHHHHHHHHhhhccCCCCCCccCChhhhHHHHHHHHHHH---H
Q 008617 424 PGIVQQISGLRADLTALQSDLENSLP-GDRNRCINELCTLIQSLQQLLFASSTTAQPILTPRPLMKELDEMEKINA---K 499 (559)
Q Consensus 424 ~~L~~~~~~L~~dl~~lq~~L~~~~~-e~~~~~i~~L~~~~~~l~qll~~~st~~qp~Lt~~eL~~~l~~le~l~~---~ 499 (559)
++++++...+-.-+..+-..-.++.. .++++-|++|+..++.-.-+ .=|-|++-+-+..++.++. +
T Consensus 246 d~vEqRL~s~lgK~~~IaEk~~~s~~Da~~d~KV~elye~~qrw~pi----------~stLP~~V~rl~al~~LHeqa~~ 315 (371)
T KOG3958|consen 246 DQVEQRLQSVLGKVNEIAEKHKASVEDADTDSKVHELYETIQRWSPI----------ASTLPELVQRLVALKQLHEQAMQ 315 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccchhhhhHHHHHHHHHhhhhH----------HHhhHHHHHHHHHHHHHHHHHHH
Confidence 56666655555555544433333333 36777788888877766555 3345777777655555544 5
Q ss_pred HHHHHHHHHHHHHhHHHhhhcCChhhhhhhhhhh----hccCCchHHHHHHHHHHHHHhhh
Q 008617 500 LSVAVEEVTLEHCKKNEIIKHHSQEVGLQRRVFV----DFFCNPERLRSQVRELTARVRAL 556 (559)
Q Consensus 500 L~~~l~dv~~d~~~Krk~L~~~~~~~~~ER~LyV----~Ff~dp~~Lk~~Ve~Le~r~~a~ 556 (559)
+-.++..+. +++.++.+ ++ ..-|+|.. -|-.|-+-...-+..+++|++++
T Consensus 316 Fa~~lthl~----t~q~~i~~-sl--~~n~ell~~vqtt~~qnl~tV~~k~a~ie~rva~l 369 (371)
T KOG3958|consen 316 FAQLLTHLD----TTQQMIAN-SL--KDNTELLTQVQTTMRQNLATVEGKFASIEERVAKL 369 (371)
T ss_pred HHHHHHHHH----HHHHHHHH-HH--hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566666665 89988887 34 33344432 34444455555566677777764
No 39
>KOG3759 consensus Uncharacterized RUN domain protein [Signal transduction mechanisms]
Probab=20.03 E-value=4.8e+02 Score=29.67 Aligned_cols=31 Identities=26% Similarity=0.311 Sum_probs=19.5
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008617 217 SVFGTSERQWVEAQVENAKQQAILMTLKSQVA 248 (559)
Q Consensus 217 ~ay~~aq~Q~I~a~a~~~~~~a~L~~l~~~~~ 248 (559)
.||-..+ -..=-.+=.++++++|.-|..|+.
T Consensus 164 ~AYe~Ge-g~LPq~viLekQk~ilDeLr~Kl~ 194 (621)
T KOG3759|consen 164 TAYENGE-GELPQTVILEKQKAILDELREKLE 194 (621)
T ss_pred HHHhcCC-CcCchHHHHHHHHHHHHHHHHHhh
Confidence 4565554 222333446778889999988874
Done!