Query 008617
Match_columns 559
No_of_seqs 70 out of 72
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 07:44:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008617.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008617hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ve7_A Kinetochore protein HEC 58.2 17 0.00059 37.0 6.8 37 5-46 72-114 (315)
2 3i5g_C Myosin catalytic light 53.3 12 0.00042 33.3 4.3 77 3-83 30-115 (159)
3 3tnu_B Keratin, type II cytosk 49.3 30 0.001 30.5 6.1 74 200-281 27-100 (129)
4 3tnu_A Keratin, type I cytoske 38.9 36 0.0012 30.2 4.9 23 259-281 80-102 (131)
5 2k48_A Nucleoprotein; viral pr 35.0 1.5E+02 0.0051 25.7 7.9 59 211-277 43-103 (107)
6 3cl3_A ORF K13, KS-vflip; deat 24.9 19 0.00064 34.1 0.6 72 1-88 3-74 (183)
7 1go4_E MAD1 (mitotic arrest de 23.4 44 0.0015 28.8 2.6 41 257-309 13-53 (100)
8 1dh3_A Transcription factor CR 21.0 1.2E+02 0.004 23.1 4.3 31 99-129 21-51 (55)
9 3mq7_A Bone marrow stromal ant 20.2 4.5E+02 0.015 23.2 8.9 29 258-286 73-101 (121)
10 3i5g_B Myosin regulatory light 18.4 27 0.00093 30.7 0.2 76 2-83 34-115 (153)
No 1
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=58.17 E-value=17 Score=37.01 Aligned_cols=37 Identities=19% Similarity=0.310 Sum_probs=26.5
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCcccC--CCCC----ccchHHHHhccC
Q 008617 5 RLCALLCELGYGGADSLDPDSFEWPF--QYDD----ARPILDWICSSL 46 (559)
Q Consensus 5 ~fve~L~~lgyp~a~~L~~edfdWLF--~~~e----~~~FL~WfC~~V 46 (559)
++...||.||||.. ++. .||. .+|- ....|.|+|.-+
T Consensus 72 ev~~~lK~L~YP~~--isK---S~L~a~g~pHsWp~~Lg~L~WLvel~ 114 (315)
T 2ve7_A 72 EVPRIFKDLGYPFA--LSK---SSMYTVGAPHTWPHIVAALVWLIDCI 114 (315)
T ss_dssp HHHHHHHHTTCSSC--CCH---HHHHTTTSTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCce--eCH---HHhcCCCCCCcHHHHHHHHHHHHHHH
Confidence 56789999999995 766 5665 3333 345789998655
No 2
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=53.28 E-value=12 Score=33.29 Aligned_cols=77 Identities=16% Similarity=0.166 Sum_probs=53.3
Q ss_pred hhHHHHHHHhcCCCCCCCCCCCCCcccCCC-------CCccchHHHHhccCCCCCCCCHHHH-hHHHHHHHccc-ccccc
Q 008617 3 GARLCALLCELGYGGADSLDPDSFEWPFQY-------DDARPILDWICSSLRPSNVLSLSEL-SQFEQFLQEEK-LLEGE 73 (559)
Q Consensus 3 G~~fve~L~~lgyp~a~~L~~edfdWLF~~-------~e~~~FL~WfC~~V~~~NVLS~~EL-~~f~~L~~sGk-iLEg~ 73 (559)
-.+|...|+.+||.-+ .+.+.-++.. -+..-|+.+++......+.-+.+++ ++|..+-+.|. .+.-.
T Consensus 30 ~~El~~~lr~lG~~~t----~~el~~~~~~d~~~~g~i~f~eFl~~~~~~~~~~~~~~~~~l~~aF~~fD~d~~G~I~~~ 105 (159)
T 3i5g_C 30 AAKVGDLLRCLGMNPT----EAQVHQHGGTKKMGEKAYKLEEILPIYEEMSSKDTGTAADEFMEAFKTFDREGQGLISSA 105 (159)
T ss_dssp GGGHHHHHHHTTCCCC----HHHHHTTTCCSSTTSCEECHHHHHHHHHHHTTCCTTCCHHHHHHHHHHHCTTSSSEECHH
T ss_pred HHHHHHHHHHcCCCCC----HHHHHHHHcccccCCCcccHHHHHHHHHHhhcccccchHHHHHHHHHHHhcCCCCcCcHH
Confidence 4689999999998532 2222333321 1235588888877776667777776 48999888888 77777
Q ss_pred cHHHHHhHhc
Q 008617 74 DLESAFDSIS 83 (559)
Q Consensus 74 aLdeal~t~~ 83 (559)
.|-.++.+++
T Consensus 106 el~~~l~~~g 115 (159)
T 3i5g_C 106 EIRNVLKMLG 115 (159)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHHhC
Confidence 8888887765
No 3
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=49.30 E-value=30 Score=30.52 Aligned_cols=74 Identities=9% Similarity=0.118 Sum_probs=30.1
Q ss_pred chhhhHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccchhhhhHhhHHHHHHhHHHHH
Q 008617 200 DLEKSHHQRVSELQRLRSVFGTSERQWVEAQVENAKQQAILMTLKSQVASDEAYIHLDFHSLKRKHVELVGELSNLHHKE 279 (559)
Q Consensus 200 ~~e~~~e~r~~El~RLq~ay~~aq~Q~I~a~a~~~~~~a~L~~l~~~~~~~~~~~~~d~~~L~~ki~~l~~el~~L~~~i 279 (559)
+++....-+. |+..++...-.=+.++-..+..++++.+.|.-+...... .+..+..+|..+..++..++.++
T Consensus 27 ~~~~l~~~k~-Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~-------~l~~~q~~i~~lE~eL~~~r~e~ 98 (129)
T 3tnu_B 27 HGDDLRNTKH-EISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGEL-------ALKDARNKLAELEEALQKAKQDM 98 (129)
T ss_dssp -------CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhHHHHHHHH
Confidence 3333333344 777776433222233333333333333344333332221 13445555556666655555554
Q ss_pred HH
Q 008617 280 EK 281 (559)
Q Consensus 280 ~~ 281 (559)
+.
T Consensus 99 ~~ 100 (129)
T 3tnu_B 99 AR 100 (129)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 4
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=38.93 E-value=36 Score=30.15 Aligned_cols=23 Identities=13% Similarity=0.170 Sum_probs=12.3
Q ss_pred chhhhhHhhHHHHHHhHHHHHHH
Q 008617 259 HSLKRKHVELVGELSNLHHKEEK 281 (559)
Q Consensus 259 ~~L~~ki~~l~~el~~L~~~i~~ 281 (559)
..+..+|..+..++..++.+++.
T Consensus 80 ~~~q~~i~~lE~eL~~~r~em~~ 102 (131)
T 3tnu_A 80 AQIQEMIGSVEEQLAQLRCEMEQ 102 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555443
No 5
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=34.96 E-value=1.5e+02 Score=25.72 Aligned_cols=59 Identities=19% Similarity=0.182 Sum_probs=32.9
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH--HHHHHHHHHHhhccCccccccccchhhhhHhhHHHHHHhHHH
Q 008617 211 ELQRLRSVFGTSERQWVEAQVENAK--QQAILMTLKSQVASDEAYIHLDFHSLKRKHVELVGELSNLHH 277 (559)
Q Consensus 211 El~RLq~ay~~aq~Q~I~a~a~~~~--~~a~L~~l~~~~~~~~~~~~~d~~~L~~ki~~l~~el~~L~~ 277 (559)
|+.+...-..+|+..+..|...... -.-+++++..+-.- ++.|..||.++++.+.....
T Consensus 43 Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~--------Vsalq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 43 NITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAA--------VSTLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Confidence 4455554445555444444433322 11266666655432 25788888888888876543
No 6
>3cl3_A ORF K13, KS-vflip; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Human herpesvirus 8}
Probab=24.87 E-value=19 Score=34.09 Aligned_cols=72 Identities=18% Similarity=0.226 Sum_probs=51.8
Q ss_pred CChhHHHHHHHhcCCCCCCCCCCCCCcccCCCCCccchHHHHhccCCCCCCCCHHHHhHHHHHHHcccccccccHHHHHh
Q 008617 1 MSGARLCALLCELGYGGADSLDPDSFEWPFQYDDARPILDWICSSLRPSNVLSLSELSQFEQFLQEEKLLEGEDLESAFD 80 (559)
Q Consensus 1 ~~G~~fve~L~~lgyp~a~~L~~edfdWLF~~~e~~~FL~WfC~~V~~~NVLS~~EL~~f~~L~~sGkiLEg~aLdeal~ 80 (559)
||.-+|..+|-.| ++.|+++ ...-|+|+|.-+=|.+-+-.-. +.|..|...|+|=+ .-|.|.|.
T Consensus 3 ~~~m~f~~~L~~I----~~~L~~~----------E~~~LkFLC~d~ip~~~le~i~-dlf~~L~~~~~l~~-~fL~ElL~ 66 (183)
T 3cl3_A 3 MGSMATYEVLCEV----ARKLGTD----------DREVVLFLLNVFIPQPTLAQLI-GALRALKEEGRLTF-PLLAECLF 66 (183)
T ss_dssp ----CCHHHHHHH----HTTSCHH----------HHHHHHHHTTCCCSSCCHHHHH-HHHHHHHTTTCSCH-HHHHHHHH
T ss_pred CCcccHHHHHHHH----HHHcCHH----------HHHHHHHHccCcCCccchHhHH-HHHHHHHHcCCCCH-HHHHHHHH
Confidence 3444667777777 3556553 3567899999998988763333 89999999999744 89999999
Q ss_pred HhccccCC
Q 008617 81 SISAFSSR 88 (559)
Q Consensus 81 t~~~~~~~ 88 (559)
.|+..|+-
T Consensus 67 ~I~R~DLl 74 (183)
T 3cl3_A 67 RAGRRDLL 74 (183)
T ss_dssp HTTCHHHH
T ss_pred HcChHHHH
Confidence 99986655
No 7
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=23.42 E-value=44 Score=28.82 Aligned_cols=41 Identities=39% Similarity=0.536 Sum_probs=31.1
Q ss_pred ccchhhhhHhhHHHHHHhHHHHHHHhhcccchhHHHHhhccccccccccchhh
Q 008617 257 DFHSLKRKHVELVGELSNLHHKEEKLLSETIPDLCWELAQLQDTYILQGDYDL 309 (559)
Q Consensus 257 d~~~L~~ki~~l~~el~~L~~~i~~l~~e~lP~l~~e~AqL~~~pIl~GD~dL 309 (559)
.+.+|+.+|.+|..|...|+.+++.+-.+ |... -++||||-
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~-----------Le~~-~l~Gd~~~ 53 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQ-----------LERR-ALQGDYDQ 53 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHS-SCCSCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHH-hhccccCC
Confidence 35688888889998888888888877654 2333 38999987
No 8
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=20.98 E-value=1.2e+02 Score=23.05 Aligned_cols=31 Identities=16% Similarity=0.261 Sum_probs=25.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008617 99 EEGLKDIREATQAYRDEAAQLQRQLRHLQCQ 129 (559)
Q Consensus 99 ee~le~lk~~~~~L~~e~~~l~~~L~~lq~~ 129 (559)
.+++.+|+.....|..++..|..++..|+..
T Consensus 21 k~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 21 KEYVKSLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568888888889999999998888886544
No 9
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=20.16 E-value=4.5e+02 Score=23.18 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=24.5
Q ss_pred cchhhhhHhhHHHHHHhHHHHHHHhhccc
Q 008617 258 FHSLKRKHVELVGELSNLHHKEEKLLSET 286 (559)
Q Consensus 258 ~~~L~~ki~~l~~el~~L~~~i~~l~~e~ 286 (559)
+..|..+|..|+.+|.+...+++.+..+.
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~ 101 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRREN 101 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35788899999999999999999888774
No 10
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=18.36 E-value=27 Score=30.72 Aligned_cols=76 Identities=13% Similarity=0.236 Sum_probs=47.2
Q ss_pred ChhHHHHHHHhcCCCCCCCCCCCCCcccC-CC---CCccchHHHHhccCCCCCCCCHHHH-hHHHHHHHccc-ccccccH
Q 008617 2 SGARLCALLCELGYGGADSLDPDSFEWPF-QY---DDARPILDWICSSLRPSNVLSLSEL-SQFEQFLQEEK-LLEGEDL 75 (559)
Q Consensus 2 ~G~~fve~L~~lgyp~a~~L~~edfdWLF-~~---~e~~~FL~WfC~~V~~~NVLS~~EL-~~f~~L~~sGk-iLEg~aL 75 (559)
+-.+|...|+.+|++-+. +.+.-++ .. -+..-|+.+++..+...+ ++++| ++|..+-..|. .+.-+.|
T Consensus 34 ~~~El~~~l~~lg~~~~~----~~~~~~~~~~~~~i~f~ef~~~~~~~~~~~~--~~~~l~~aF~~fD~d~~G~I~~~el 107 (153)
T 3i5g_B 34 GMEDLKDMFSSLGRVPPD----DELNAMLKECPGQLNFTAFLTLFGEKVSGTD--PEDALRNAFSMFDEDGQGFIPEDYL 107 (153)
T ss_dssp CHHHHHHHHHHTTSCCCH----HHHHHHHHTSSSCCCSHHHHHTTTTTTTTCC--CHHHHHHHHHTTCSSCSSCCCHHHH
T ss_pred cHHHHHHHHHHcCCCccH----HHHHHHHHhccCCccHHHHHHHHHhhhcccc--cHHHHHHHHhccccCCCCeEeHHHH
Confidence 346888999999987653 2233322 22 234567777766655433 45555 47777777777 6777777
Q ss_pred HHHHhHhc
Q 008617 76 ESAFDSIS 83 (559)
Q Consensus 76 deal~t~~ 83 (559)
-.++.+++
T Consensus 108 ~~~l~~~g 115 (153)
T 3i5g_B 108 KDLLENMG 115 (153)
T ss_dssp HHHHHSSS
T ss_pred HHHHHHcC
Confidence 77777654
Done!