Query 008617
Match_columns 559
No_of_seqs 70 out of 72
Neff 5.3
Searched_HMMs 13730
Date Mon Mar 25 07:44:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008617.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008617hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2mysc_ a.39.1.5 (C:) Myosin R 41.7 6.8 0.0005 31.8 2.8 77 3-83 23-111 (145)
2 d1ggwa_ a.39.1.5 (A:) Cdc4p {F 40.1 3.1 0.00022 34.3 0.2 78 2-83 23-106 (140)
3 d2j01f1 c.22.1.1 (F:1-208) Rib 32.8 6.8 0.00049 35.3 1.4 65 4-78 137-202 (208)
4 d1wdcb_ a.39.1.5 (B:) Myosin E 21.0 13 0.00093 30.2 0.8 76 2-83 25-106 (142)
5 d2diia1 a.240.1.1 (A:8-55) TFI 16.3 32 0.0023 24.0 1.8 25 509-533 7-31 (48)
6 d1xb4a2 a.4.5.54 (A:126-199) V 12.0 60 0.0044 24.5 2.6 23 36-58 8-30 (74)
7 d1wdcc_ a.39.1.5 (C:) Myosin R 11.9 38 0.0028 27.4 1.5 79 3-83 28-112 (152)
8 d3bb6a1 b.82.2.13 (A:1-109) Un 11.2 22 0.0016 29.1 -0.3 14 529-542 92-105 (109)
9 d2hf5a1 a.39.1.5 (A:81-113) Tr 10.2 52 0.0038 21.1 1.4 29 53-81 1-31 (33)
10 d1lrza1 a.2.7.4 (A:245-309) Me 8.9 3.3E+02 0.024 19.5 6.6 24 100-123 3-26 (65)
No 1
>d2mysc_ a.39.1.5 (C:) Myosin Regulatory Chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=41.70 E-value=6.8 Score=31.83 Aligned_cols=77 Identities=9% Similarity=0.158 Sum_probs=50.8
Q ss_pred hhHHHHHHHhcCCCCCCCCCCCCCcccC-----C-----CCCccchHHHHhccCCCCCCCCHHHH-hHHHHHHHccc-cc
Q 008617 3 GARLCALLCELGYGGADSLDPDSFEWPF-----Q-----YDDARPILDWICSSLRPSNVLSLSEL-SQFEQFLQEEK-LL 70 (559)
Q Consensus 3 G~~fve~L~~lgyp~a~~L~~edfdWLF-----~-----~~e~~~FL~WfC~~V~~~NVLS~~EL-~~f~~L~~sGk-iL 70 (559)
-.+|...|+.+||+-. ++.+..++ + ..+..-|+.+++...++...-+.+++ ++|..+-..|. .+
T Consensus 23 ~~el~~~l~~lg~~~~----~~e~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~l~~aF~~~D~d~~G~I 98 (145)
T d2mysc_ 23 ASQVGDIARALGQNPT----NAEINKILGNPSKEEMNAAAITFEEFLPMLQAAANNKDQGTFEDFVEGLRVFDKEGNGTV 98 (145)
T ss_pred HHHHHHHHHHhhhcch----hhhhHHHHHHHhhcccccCccchhHHHHHHhhhhhccccchHHHHHHHHHHhhcCCCCEE
Confidence 3688999999998642 23333232 1 12346678888777766555555555 68888888777 67
Q ss_pred ccccHHHHHhHhc
Q 008617 71 EGEDLESAFDSIS 83 (559)
Q Consensus 71 Eg~aLdeal~t~~ 83 (559)
.-.+|-.++++++
T Consensus 99 ~~~el~~~l~~~g 111 (145)
T d2mysc_ 99 MGAELRHVLATLG 111 (145)
T ss_pred cHHHHHHHHHHhC
Confidence 7777877877654
No 2
>d1ggwa_ a.39.1.5 (A:) Cdc4p {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=40.10 E-value=3.1 Score=34.26 Aligned_cols=78 Identities=13% Similarity=0.078 Sum_probs=51.0
Q ss_pred ChhHHHHHHHhcCCCCCCCCCCCCCcccC-CC---CCccchHHHHhccCCCCCCCCHHHH-hHHHHHHHccc-ccccccH
Q 008617 2 SGARLCALLCELGYGGADSLDPDSFEWPF-QY---DDARPILDWICSSLRPSNVLSLSEL-SQFEQFLQEEK-LLEGEDL 75 (559)
Q Consensus 2 ~G~~fve~L~~lgyp~a~~L~~edfdWLF-~~---~e~~~FL~WfC~~V~~~NVLS~~EL-~~f~~L~~sGk-iLEg~aL 75 (559)
+-.+|..+|+.+|++-+ ++.+.-+. +. .....|+.|+........--+.+++ ++|..+-..|. .+.-.+|
T Consensus 23 ~~~el~~~l~~lg~~~t----~~ei~~~~~~~~~~i~~~eF~~~~~~~~~~~~~~~~~~l~~aF~~~D~d~~G~I~~~el 98 (140)
T d1ggwa_ 23 PKTSIGDLLRACGQNPT----LAEITEIESTLPAEVDMEQFLQVLNRPNGFDMPGDPEEFVKGFQVFDKDATGMIGVGEL 98 (140)
T ss_dssp CHHHHHHHHHHTSCCCC----HHHHHHHHTTSCSSEEHHHHHHHHCTTSSSSSSCCHHHHHHHHHTTCSSCSSCCCHHHH
T ss_pred CHHHHHHHHHHHHhhhH----HHhhhhhhccccccccchhhhhhhhhhhhcchhhHHHHHHHHHHHHhccCCCcchHHHH
Confidence 34689999999998643 22332222 11 1245788888776666555566666 46777777777 6777777
Q ss_pred HHHHhHhc
Q 008617 76 ESAFDSIS 83 (559)
Q Consensus 76 deal~t~~ 83 (559)
-.+|.+++
T Consensus 99 ~~~l~~~g 106 (140)
T d1ggwa_ 99 RYVLTSLG 106 (140)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHcC
Confidence 77777665
No 3
>d2j01f1 c.22.1.1 (F:1-208) Ribosomal protein L4 {Thermus thermophilus [TaxId: 274]}
Probab=32.76 E-value=6.8 Score=35.35 Aligned_cols=65 Identities=15% Similarity=0.196 Sum_probs=49.3
Q ss_pred hHHHHHHHhcCCCCCCCCCCCCCcccCCCCCccchHHHHhccCCCCCCCCHHHHhHHHHHHHccc-ccccccHHHH
Q 008617 4 ARLCALLCELGYGGADSLDPDSFEWPFQYDDARPILDWICSSLRPSNVLSLSELSQFEQFLQEEK-LLEGEDLESA 78 (559)
Q Consensus 4 ~~fve~L~~lgyp~a~~L~~edfdWLF~~~e~~~FL~WfC~~V~~~NVLS~~EL~~f~~L~~sGk-iLEg~aLdea 78 (559)
++|++.|+.+|..+...+ |+..++ +. +..-|+|+..-+|++..+|..|+-| +.++ +++..||+..
T Consensus 137 K~~~~~L~~l~l~~~~~v-------l~v~~~-en-~~~s~rNi~~v~v~~~~~lNv~dlL-~~~~lvit~~Al~~L 202 (208)
T d2j01f1 137 KEFLAWAKEAGLDGSESV-------LLVTGN-EL-VRRAARNLPWVVTLAPEGLNVYDIV-RTERLVMDLDAWEVF 202 (208)
T ss_dssp HHHHHHHHHHTCCSSSCE-------EEECSC-HH-HHHHHTTCTTEEEECGGGCCHHHHH-HSSEEEEEHHHHHHH
T ss_pred HHHHHHHHHhccccccce-------eeccch-hH-HHHHHhCCCCCEEeecCCccHHHHh-cCCcEEEEHHHHHHH
Confidence 589999999998765433 443322 33 5678999999999999999999987 7788 6887776543
No 4
>d1wdcb_ a.39.1.5 (B:) Myosin Essential Chain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}
Probab=21.03 E-value=13 Score=30.20 Aligned_cols=76 Identities=16% Similarity=0.177 Sum_probs=50.8
Q ss_pred ChhHHHHHHHhcCCCCCCCCCCCCCcccC-C---CCCccchHHHHhccCCCCCCCCHHHHh-HHHHHHHccc-ccccccH
Q 008617 2 SGARLCALLCELGYGGADSLDPDSFEWPF-Q---YDDARPILDWICSSLRPSNVLSLSELS-QFEQFLQEEK-LLEGEDL 75 (559)
Q Consensus 2 ~G~~fve~L~~lgyp~a~~L~~edfdWLF-~---~~e~~~FL~WfC~~V~~~NVLS~~EL~-~f~~L~~sGk-iLEg~aL 75 (559)
+-.+|...|+.+|++-. ++.+.=+| + ...-.-|+.|+|..+...+ +.+++. +|..+-+.|. -+.-++|
T Consensus 25 ~~~el~~~l~~lg~~~~----~~el~~~~~~~~~~i~~~eF~~~~~~~~~~~~--~~~~l~~aF~~~D~d~~G~I~~~el 98 (142)
T d1wdcb_ 25 SKEDIKAISEQLGRAPD----DKELTAMLKEAPGPLNFTMFLSIFSDKLSGTD--SEETIRNAFAMFDEQETKKLNIEYI 98 (142)
T ss_dssp CHHHHHHHHHHHSSCCC----HHHHHHHHTTSSSCCCHHHHHHHHHHHTCSCC--CHHHHHHHHHTTCTTCCSCEEHHHH
T ss_pred ChHHHHHHHHHhhcCCC----HHHHHHHHHhccCccccccccccccccccccc--hhhhHHHhhhhhcccCCCcccHHHH
Confidence 44688999999998753 23333333 1 2334679999998776654 355554 6888777777 6777777
Q ss_pred HHHHhHhc
Q 008617 76 ESAFDSIS 83 (559)
Q Consensus 76 deal~t~~ 83 (559)
-.++.+++
T Consensus 99 ~~~l~~~g 106 (142)
T d1wdcb_ 99 KDLLENMG 106 (142)
T ss_dssp HHHHHHSS
T ss_pred HHHHHHcc
Confidence 77777765
No 5
>d2diia1 a.240.1.1 (A:8-55) TFIIH basal transcription factor complex p62 subunit, BTF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.31 E-value=32 Score=23.99 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=19.7
Q ss_pred HHHHhHHHhhhcCChhhhhhhhhhh
Q 008617 509 LEHCKKNEIIKHHSQEVGLQRRVFV 533 (559)
Q Consensus 509 ~d~~~Krk~L~~~~~~~~~ER~LyV 533 (559)
+|.+.|.++|+.||-+.|.=|.|-|
T Consensus 7 keLeEKnr~L~enp~L~qLYkdLVv 31 (48)
T d2diia1 7 KELEEKNRMLQEDPVLFQLYKDLVV 31 (48)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHT
T ss_pred HHHHHHhhccccCHHHHHHHHHHHH
Confidence 4677999999999887776666655
No 6
>d1xb4a2 a.4.5.54 (A:126-199) Vacuolar protein sorting-associated protein VPS25 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=11.98 E-value=60 Score=24.48 Aligned_cols=23 Identities=39% Similarity=0.559 Sum_probs=20.0
Q ss_pred cchHHHHhccCCCCCCCCHHHHh
Q 008617 36 RPILDWICSSLRPSNVLSLSELS 58 (559)
Q Consensus 36 ~~FL~WfC~~V~~~NVLS~~EL~ 58 (559)
.-+++|++.|-...-|++.-||.
T Consensus 8 ~~i~~Wv~~~G~~~sV~TlyEL~ 30 (74)
T d1xb4a2 8 SLILQWFEDSGKLNQVITLYELS 30 (74)
T ss_dssp HHHHHHHHTTSCTTSCEEHHHHC
T ss_pred HHHHHHHHHcCCCCceEEEeeec
Confidence 45789999999999999999986
No 7
>d1wdcc_ a.39.1.5 (C:) Myosin Regulatory Chain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}
Probab=11.85 E-value=38 Score=27.36 Aligned_cols=79 Identities=11% Similarity=0.132 Sum_probs=45.9
Q ss_pred hhHHHHHHHhcCCCCCCCCCCCCCcccCC-CC---CccchHHHHhccCCCCCCCCHHHH-hHHHHHHHccc-ccccccHH
Q 008617 3 GARLCALLCELGYGGADSLDPDSFEWPFQ-YD---DARPILDWICSSLRPSNVLSLSEL-SQFEQFLQEEK-LLEGEDLE 76 (559)
Q Consensus 3 G~~fve~L~~lgyp~a~~L~~edfdWLF~-~~---e~~~FL~WfC~~V~~~NVLS~~EL-~~f~~L~~sGk-iLEg~aLd 76 (559)
-.+|..+|+.+||+-+..-- ..+-+.+. +. +..-|+.|+....+... -+.+++ ++|..+-..|. .+.-.+|-
T Consensus 28 ~~el~~~l~~lG~~~t~~e~-~~~~~~~~~~~~~i~~~eFl~~~~~~~~~~~-~~~~~l~~aF~~~D~~~~G~I~~~el~ 105 (152)
T d1wdcc_ 28 AFKLGDVCRCLGINPRNEDV-FAVGGTHKMGEKSLPFEEFLPAYEGLMDCEQ-GTFADYMEAFKTFDREGQGFISGAELR 105 (152)
T ss_dssp GGGHHHHHHHTTCCCCHHHH-HHTTCCSSTTSCEECHHHHHHHHHHHTTSCC-CCHHHHHHHHHTTCSSSSSEEEHHHHH
T ss_pred HHHHHHHHHHhccCccHhhh-hhhhhhhccccccccccccccccccccccch-hHHHhhhhhhhccccccCccchHHHHH
Confidence 46899999999986422100 12334442 21 23568887766554332 334454 57777766666 56666677
Q ss_pred HHHhHhc
Q 008617 77 SAFDSIS 83 (559)
Q Consensus 77 eal~t~~ 83 (559)
.++.+++
T Consensus 106 ~~l~~~g 112 (152)
T d1wdcc_ 106 HVLTALG 112 (152)
T ss_dssp HHHHHSS
T ss_pred HHHHHcC
Confidence 7776654
No 8
>d3bb6a1 b.82.2.13 (A:1-109) Uncharacterized protein YeaR {Escherichia coli [TaxId: 562]}
Probab=11.25 E-value=22 Score=29.05 Aligned_cols=14 Identities=43% Similarity=0.707 Sum_probs=8.4
Q ss_pred hhhhhhccCCchHH
Q 008617 529 RRVFVDFFCNPERL 542 (559)
Q Consensus 529 R~LyV~Ff~dp~~L 542 (559)
-+-||.|||.|+.|
T Consensus 92 ~~f~v~Fy~~pe~l 105 (109)
T d3bb6a1 92 TYFNIDFFVAPEVL 105 (109)
T ss_dssp CEEEEEEEECHHHH
T ss_pred EEEEEEEEECCccc
Confidence 34566666666655
No 9
>d2hf5a1 a.39.1.5 (A:81-113) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}
Probab=10.23 E-value=52 Score=21.05 Aligned_cols=29 Identities=17% Similarity=0.370 Sum_probs=19.6
Q ss_pred CHHHH-hHHHHHHHccc-ccccccHHHHHhH
Q 008617 53 SLSEL-SQFEQFLQEEK-LLEGEDLESAFDS 81 (559)
Q Consensus 53 S~~EL-~~f~~L~~sGk-iLEg~aLdeal~t 81 (559)
|++|+ +||..+-+.|. .....+|-.|+.+
T Consensus 1 seeel~eAF~~FDkDg~G~Is~~EL~~vm~~ 31 (33)
T d2hf5a1 1 SEEEIREAFRVFDKDGNGYISAAELRHVMTN 31 (33)
T ss_dssp CHHHHHHHHHHHSSSCCSCBCHHHHHHHTTS
T ss_pred CHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 45555 47888877777 6677777766654
No 10
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}
Probab=8.91 E-value=3.3e+02 Score=19.52 Aligned_cols=24 Identities=13% Similarity=0.307 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 008617 100 EGLKDIREATQAYRDEAAQLQRQL 123 (559)
Q Consensus 100 e~le~lk~~~~~L~~e~~~l~~~L 123 (559)
+|+..|+.....|.+.++++...|
T Consensus 3 eYl~~L~~~~~~L~~~i~k~~~~l 26 (65)
T d1lrza1 3 EYIKELNEERDILNKDLNKALKDI 26 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888888888887666533
Done!