Query 008619
Match_columns 559
No_of_seqs 381 out of 2404
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 07:47:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008619.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008619hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1irz_A ARR10-B; helix-turn-hel 100.0 4.3E-29 1.5E-33 200.9 6.8 62 314-375 2-63 (64)
2 3to5_A CHEY homolog; alpha(5)b 99.9 2.6E-24 8.8E-29 195.9 14.3 118 14-134 9-133 (134)
3 3gl9_A Response regulator; bet 99.9 1.6E-20 5.5E-25 162.5 16.1 113 18-133 3-121 (122)
4 3t6k_A Response regulator rece 99.8 2.3E-20 7.8E-25 164.5 16.4 117 16-135 3-125 (136)
5 3f6p_A Transcriptional regulat 99.8 2.8E-20 9.4E-25 160.2 14.9 113 18-133 3-118 (120)
6 3r0j_A Possible two component 99.8 1.4E-19 4.9E-24 176.0 18.3 144 15-161 21-191 (250)
7 2lpm_A Two-component response 99.8 2.2E-22 7.5E-27 181.1 -2.2 110 17-132 8-120 (123)
8 3rqi_A Response regulator prot 99.8 5.3E-20 1.8E-24 171.0 13.4 119 15-136 5-127 (184)
9 3crn_A Response regulator rece 99.8 3.4E-19 1.2E-23 155.6 17.0 117 17-136 3-123 (132)
10 3jte_A Response regulator rece 99.8 6.3E-19 2.1E-23 154.9 17.9 121 16-137 2-126 (143)
11 1dbw_A Transcriptional regulat 99.8 6.1E-19 2.1E-23 152.1 17.3 114 17-133 3-120 (126)
12 3m6m_D Sensory/regulatory prot 99.8 2.8E-19 9.7E-24 159.1 15.6 117 15-134 12-136 (143)
13 1yio_A Response regulatory pro 99.8 9.8E-20 3.4E-24 170.8 13.2 146 15-163 2-159 (208)
14 3gt7_A Sensor protein; structu 99.8 4.2E-19 1.4E-23 159.5 16.7 117 17-136 7-129 (154)
15 2pl1_A Transcriptional regulat 99.8 7.1E-19 2.4E-23 149.6 17.2 114 18-134 1-118 (121)
16 3h1g_A Chemotaxis protein CHEY 99.8 3.8E-19 1.3E-23 154.6 15.4 115 17-133 5-126 (129)
17 3hv2_A Response regulator/HD d 99.8 6.8E-19 2.3E-23 157.4 17.1 122 13-137 10-136 (153)
18 1kgs_A DRRD, DNA binding respo 99.8 6.2E-19 2.1E-23 166.9 16.2 142 17-161 2-166 (225)
19 2a9o_A Response regulator; ess 99.8 8.3E-19 2.8E-23 148.6 15.3 114 18-134 2-118 (120)
20 2qzj_A Two-component response 99.8 7.9E-19 2.7E-23 154.6 15.6 118 16-136 3-123 (136)
21 1srr_A SPO0F, sporulation resp 99.8 4.3E-19 1.5E-23 152.3 13.5 114 17-133 3-120 (124)
22 1xhf_A DYE resistance, aerobic 99.8 1.4E-18 4.8E-23 148.5 16.6 116 17-135 3-121 (123)
23 1zgz_A Torcad operon transcrip 99.8 1.7E-18 5.9E-23 147.8 16.9 114 18-134 3-119 (122)
24 3grc_A Sensor protein, kinase; 99.8 3.8E-19 1.3E-23 155.8 13.0 120 15-137 4-130 (140)
25 1a04_A Nitrate/nitrite respons 99.8 8.6E-19 2.9E-23 165.5 16.4 147 16-165 4-173 (215)
26 3q9s_A DNA-binding response re 99.8 2.5E-19 8.7E-24 175.5 13.1 143 16-161 36-197 (249)
27 3heb_A Response regulator rece 99.8 1.4E-18 4.6E-23 154.9 16.6 120 15-135 2-136 (152)
28 3eod_A Protein HNR; response r 99.8 7.2E-19 2.5E-23 152.1 14.3 117 16-135 6-127 (130)
29 2r25_B Osmosensing histidine p 99.8 7.9E-19 2.7E-23 154.0 14.7 116 17-133 2-126 (133)
30 1jbe_A Chemotaxis protein CHEY 99.8 2.1E-18 7.2E-23 148.4 17.0 116 16-134 3-125 (128)
31 1tmy_A CHEY protein, TMY; chem 99.8 9.2E-19 3.1E-23 149.1 14.6 113 17-132 2-119 (120)
32 3kht_A Response regulator; PSI 99.8 1.6E-18 5.5E-23 152.7 16.6 120 16-138 4-132 (144)
33 3nhm_A Response regulator; pro 99.8 9.6E-19 3.3E-23 151.5 14.6 119 14-137 1-125 (133)
34 3kto_A Response regulator rece 99.8 6.6E-19 2.3E-23 154.5 13.7 120 16-137 5-129 (136)
35 3cfy_A Putative LUXO repressor 99.8 1.2E-18 4.2E-23 153.6 15.2 116 18-136 5-124 (137)
36 3hdg_A Uncharacterized protein 99.8 8.7E-19 3E-23 152.9 14.0 119 17-138 7-129 (137)
37 3i42_A Response regulator rece 99.8 4E-19 1.4E-23 153.1 11.6 115 16-134 2-122 (127)
38 4e7p_A Response regulator; DNA 99.8 1.5E-18 5.2E-23 154.6 15.6 117 15-134 18-140 (150)
39 3snk_A Response regulator CHEY 99.8 1.1E-19 3.7E-24 159.0 7.9 118 14-134 11-133 (135)
40 3hdv_A Response regulator; PSI 99.8 1.9E-18 6.6E-23 150.5 15.8 119 15-136 5-129 (136)
41 3b2n_A Uncharacterized protein 99.8 1.1E-18 3.7E-23 152.5 14.1 116 17-135 3-124 (133)
42 1zh2_A KDP operon transcriptio 99.8 1.6E-18 5.5E-23 147.0 14.5 115 17-134 1-118 (121)
43 3lua_A Response regulator rece 99.8 5.9E-19 2E-23 154.8 11.9 120 16-137 3-130 (140)
44 1p6q_A CHEY2; chemotaxis, sign 99.8 1.2E-18 3.9E-23 150.3 13.4 115 16-133 5-126 (129)
45 3hzh_A Chemotaxis response reg 99.8 1.1E-18 3.8E-23 157.3 13.5 116 15-133 34-156 (157)
46 2qxy_A Response regulator; reg 99.8 1.7E-18 5.8E-23 152.0 14.2 118 15-136 2-123 (142)
47 3kcn_A Adenylate cyclase homol 99.8 3.2E-18 1.1E-22 152.6 16.3 119 14-136 1-125 (151)
48 2qr3_A Two-component system re 99.8 2.4E-18 8.1E-23 150.0 14.7 116 16-134 2-126 (140)
49 1i3c_A Response regulator RCP1 99.8 6.7E-18 2.3E-22 150.6 17.9 120 16-136 7-139 (149)
50 3cnb_A DNA-binding response re 99.8 3.8E-18 1.3E-22 148.8 15.9 119 14-135 5-131 (143)
51 1k68_A Phytochrome response re 99.8 8.9E-18 3E-22 145.3 17.8 120 17-137 2-134 (140)
52 3h5i_A Response regulator/sens 99.8 1.3E-18 4.5E-23 153.3 12.6 120 16-137 4-127 (140)
53 1mvo_A PHOP response regulator 99.8 3E-18 1E-22 149.0 14.2 115 17-134 3-121 (136)
54 2zay_A Response regulator rece 99.8 2.1E-18 7.3E-23 152.2 13.4 118 16-136 7-130 (147)
55 1ys7_A Transcriptional regulat 99.8 2.6E-18 8.9E-23 163.5 14.7 142 17-161 7-174 (233)
56 1mb3_A Cell division response 99.8 3E-18 1E-22 146.3 13.6 113 18-133 2-120 (124)
57 1dz3_A Stage 0 sporulation pro 99.8 2E-18 6.9E-23 149.6 12.7 115 17-134 2-123 (130)
58 3f6c_A Positive transcription 99.8 7.3E-19 2.5E-23 152.4 9.9 116 17-135 1-121 (134)
59 3luf_A Two-component system re 99.8 4.1E-18 1.4E-22 168.5 16.2 119 16-137 123-248 (259)
60 1k66_A Phytochrome response re 99.8 1.4E-17 4.8E-22 145.9 17.7 121 16-137 5-141 (149)
61 3cg0_A Response regulator rece 99.8 7.3E-18 2.5E-22 146.9 15.7 120 16-138 8-132 (140)
62 2rjn_A Response regulator rece 99.8 1.1E-17 3.8E-22 149.3 17.0 118 16-136 6-128 (154)
63 3lte_A Response regulator; str 99.8 5.9E-18 2E-22 146.3 14.7 116 16-135 5-126 (132)
64 3c3m_A Response regulator rece 99.8 6.2E-18 2.1E-22 148.6 15.1 115 17-134 3-123 (138)
65 2jba_A Phosphate regulon trans 99.8 9.6E-19 3.3E-23 150.0 9.6 115 17-134 2-122 (127)
66 3n53_A Response regulator rece 99.8 1.6E-18 5.3E-23 152.1 10.9 117 16-136 2-124 (140)
67 3mm4_A Histidine kinase homolo 99.8 4.5E-18 1.5E-22 161.8 14.8 119 14-135 58-197 (206)
68 2oqr_A Sensory transduction pr 99.8 3.4E-18 1.2E-22 162.7 13.9 142 17-161 4-171 (230)
69 1dcf_A ETR1 protein; beta-alph 99.8 1.4E-17 4.7E-22 145.4 16.1 114 16-133 6-128 (136)
70 3n0r_A Response regulator; sig 99.8 8.6E-19 3E-23 177.0 9.4 114 17-135 160-278 (286)
71 3cg4_A Response regulator rece 99.8 2.9E-18 9.9E-23 150.1 11.3 119 16-137 6-130 (142)
72 3cu5_A Two component transcrip 99.8 3.9E-18 1.3E-22 151.1 12.1 117 17-136 2-125 (141)
73 3c3w_A Two component transcrip 99.8 7.1E-19 2.4E-23 168.7 7.8 147 17-166 1-169 (225)
74 1qkk_A DCTD, C4-dicarboxylate 99.8 1.5E-17 5.2E-22 148.5 15.9 117 17-136 3-123 (155)
75 3eul_A Possible nitrate/nitrit 99.8 1.2E-17 4.2E-22 148.7 14.8 119 14-135 12-136 (152)
76 3a10_A Response regulator; pho 99.8 3.9E-18 1.3E-22 144.3 11.0 110 18-132 2-115 (116)
77 2ayx_A Sensor kinase protein R 99.8 8.8E-18 3E-22 165.3 15.0 118 16-136 128-249 (254)
78 2gwr_A DNA-binding response re 99.7 3.3E-18 1.1E-22 164.9 11.6 141 18-161 6-168 (238)
79 1s8n_A Putative antiterminator 99.7 8.3E-18 2.8E-22 157.9 13.7 118 15-135 11-132 (205)
80 4dad_A Putative pilus assembly 99.7 3.8E-18 1.3E-22 150.7 10.6 119 15-134 18-141 (146)
81 3ilh_A Two component response 99.7 2.1E-17 7.2E-22 144.6 15.1 119 15-134 7-139 (146)
82 3cz5_A Two-component response 99.7 1.4E-17 5E-22 148.4 14.3 116 16-134 4-125 (153)
83 3dzd_A Transcriptional regulat 99.7 8E-18 2.7E-22 176.0 12.9 115 19-136 2-120 (368)
84 2gkg_A Response regulator homo 99.7 1.3E-17 4.4E-22 141.9 11.8 112 18-133 6-124 (127)
85 1p2f_A Response regulator; DRR 99.7 2.8E-17 9.5E-22 155.7 14.9 139 17-161 2-160 (220)
86 2jk1_A HUPR, hydrogenase trans 99.7 6.5E-17 2.2E-21 141.9 15.7 114 18-135 2-120 (139)
87 3eqz_A Response regulator; str 99.7 1.1E-17 3.7E-22 144.6 10.5 115 16-134 2-125 (135)
88 2qvg_A Two component response 99.7 6.8E-17 2.3E-21 141.5 15.4 117 16-133 6-134 (143)
89 2qv0_A Protein MRKE; structura 99.7 1.3E-16 4.4E-21 140.1 16.5 117 17-138 9-131 (143)
90 3eq2_A Probable two-component 99.7 1.6E-17 5.6E-22 172.5 12.5 116 17-135 5-125 (394)
91 1ny5_A Transcriptional regulat 99.7 6.7E-17 2.3E-21 169.8 15.1 115 18-135 1-119 (387)
92 1w25_A Stalked-cell differenti 99.7 8.2E-17 2.8E-21 169.8 15.6 115 18-135 2-122 (459)
93 3klo_A Transcriptional regulat 99.7 4.3E-18 1.5E-22 162.7 5.0 146 16-164 6-177 (225)
94 2pln_A HP1043, response regula 99.7 1.9E-16 6.6E-21 138.2 15.0 114 14-134 15-133 (137)
95 2qsj_A DNA-binding response re 99.7 4E-17 1.4E-21 145.4 10.6 117 16-134 2-124 (154)
96 2rdm_A Response regulator rece 99.7 1.8E-16 6.2E-21 136.7 14.4 116 16-135 4-124 (132)
97 3kyj_B CHEY6 protein, putative 99.7 6.6E-17 2.3E-21 142.9 10.8 112 15-129 11-130 (145)
98 3c97_A Signal transduction his 99.7 8.8E-17 3E-21 141.2 11.1 114 17-136 10-132 (140)
99 3t8y_A CHEB, chemotaxis respon 99.7 2.9E-16 1E-20 142.9 14.2 114 16-132 24-153 (164)
100 2hqr_A Putative transcriptiona 99.7 8.7E-17 3E-21 152.6 10.6 137 18-161 1-158 (223)
101 3bre_A Probable two-component 99.7 2.3E-16 7.8E-21 160.3 14.1 114 17-133 18-138 (358)
102 2j48_A Two-component sensor ki 99.7 1.5E-16 5.1E-21 132.8 10.0 109 18-132 2-116 (119)
103 1dc7_A NTRC, nitrogen regulati 99.7 2.8E-18 9.5E-23 145.8 -1.5 115 17-134 3-121 (124)
104 3sy8_A ROCR; TIM barrel phosph 99.6 2.1E-16 7.3E-21 165.5 10.3 119 16-136 2-130 (400)
105 1qo0_D AMIR; binding protein, 99.6 3.7E-16 1.3E-20 145.6 9.0 112 16-135 11-126 (196)
106 2b4a_A BH3024; flavodoxin-like 99.6 5.4E-16 1.8E-20 135.6 8.4 115 14-134 12-131 (138)
107 1a2o_A CHEB methylesterase; ba 99.6 1E-14 3.5E-19 151.7 15.0 115 16-133 2-132 (349)
108 3luf_A Two-component system re 99.6 2.9E-15 1E-19 148.0 10.2 101 17-121 4-107 (259)
109 2vyc_A Biodegradative arginine 99.5 3.2E-14 1.1E-18 161.6 8.2 117 18-136 1-135 (755)
110 1w25_A Stalked-cell differenti 98.9 3.2E-08 1.1E-12 104.1 17.2 114 17-135 152-271 (459)
111 3cwo_X Beta/alpha-barrel prote 98.8 1.5E-09 5E-14 102.8 3.7 88 42-132 6-99 (237)
112 2ayx_A Sensor kinase protein R 97.1 0.00047 1.6E-08 67.2 5.9 96 15-132 9-104 (254)
113 3n75_A LDC, lysine decarboxyla 96.6 0.001 3.5E-08 75.5 4.0 102 29-135 18-124 (715)
114 3q7r_A Transcriptional regulat 96.3 0.027 9.3E-07 49.2 10.2 100 18-134 13-118 (121)
115 2yxb_A Coenzyme B12-dependent 95.1 0.41 1.4E-05 44.2 13.9 117 17-136 18-147 (161)
116 3cwo_X Beta/alpha-barrel prote 94.0 0.19 6.5E-06 46.7 9.0 77 49-127 131-219 (237)
117 1ccw_A Protein (glutamate muta 92.5 3.5 0.00012 36.7 14.6 111 18-131 4-133 (137)
118 3q58_A N-acetylmannosamine-6-p 91.8 0.78 2.7E-05 44.8 10.0 97 17-117 101-210 (229)
119 3igs_A N-acetylmannosamine-6-p 90.2 1.4 4.6E-05 43.1 10.0 97 17-117 101-210 (232)
120 3fkq_A NTRC-like two-domain pr 89.8 1.4 4.8E-05 45.3 10.3 106 16-134 20-128 (373)
121 1wv2_A Thiazole moeity, thiazo 87.4 3 0.0001 41.9 10.4 100 29-132 123-236 (265)
122 2bfw_A GLGA glycogen synthase; 85.6 6.6 0.00023 35.1 11.0 105 17-133 70-179 (200)
123 1r8j_A KAIA; circadian clock p 82.8 8.2 0.00028 38.9 10.9 120 14-139 6-134 (289)
124 3qja_A IGPS, indole-3-glycerol 82.5 11 0.00036 37.7 11.8 95 20-117 139-242 (272)
125 2i2x_B MTAC, methyltransferase 82.3 11 0.00038 36.9 11.8 108 17-132 123-242 (258)
126 2yus_A SWI/SNF-related matrix- 82.1 3.4 0.00012 34.0 6.7 47 319-370 18-64 (79)
127 2xij_A Methylmalonyl-COA mutas 81.5 7.5 0.00026 44.5 11.4 118 17-137 604-734 (762)
128 2gek_A Phosphatidylinositol ma 80.9 4.5 0.00015 40.2 8.5 106 17-133 240-348 (406)
129 3tsm_A IGPS, indole-3-glycerol 79.8 17 0.00057 36.4 12.2 87 28-117 156-249 (272)
130 1req_A Methylmalonyl-COA mutas 78.2 7.3 0.00025 44.3 9.9 116 17-135 596-724 (727)
131 2hzd_A Transcriptional enhance 78.0 2.5 8.4E-05 35.4 4.5 55 319-374 6-77 (82)
132 1y80_A Predicted cobalamin bin 77.1 4.9 0.00017 37.9 7.0 95 17-116 88-196 (210)
133 2xci_A KDO-transferase, 3-deox 76.5 6.2 0.00021 40.2 8.1 109 17-133 225-345 (374)
134 2f9f_A First mannosyl transfer 76.1 13 0.00044 33.1 9.3 105 17-133 50-161 (177)
135 1rzu_A Glycogen synthase 1; gl 75.9 17 0.00057 37.4 11.3 106 17-132 320-438 (485)
136 1xrs_B D-lysine 5,6-aminomutas 75.5 25 0.00086 35.1 12.0 113 17-134 120-258 (262)
137 1yad_A Regulatory protein TENI 75.5 12 0.00042 35.2 9.4 72 41-116 110-191 (221)
138 2yum_A ZZZ3 protein, zinc fing 75.3 4.1 0.00014 32.6 5.1 51 319-371 8-61 (75)
139 4fyk_A Deoxyribonucleoside 5'- 75.1 5.5 0.00019 36.8 6.5 111 18-134 3-142 (152)
140 3fro_A GLGA glycogen synthase; 74.2 21 0.00071 35.5 11.2 105 17-133 285-394 (439)
141 2htm_A Thiazole biosynthesis p 74.0 11 0.00039 37.8 9.0 94 34-132 117-227 (268)
142 2iw1_A Lipopolysaccharide core 73.7 9.5 0.00033 37.3 8.4 105 17-133 228-336 (374)
143 2qzs_A Glycogen synthase; glyc 73.3 12 0.0004 38.6 9.4 106 17-132 321-439 (485)
144 1xi3_A Thiamine phosphate pyro 73.2 24 0.00081 32.5 10.6 73 40-116 107-189 (215)
145 2q5c_A NTRC family transcripti 73.1 18 0.00061 34.1 9.8 76 14-95 1-77 (196)
146 2cqr_A RSGI RUH-043, DNAJ homo 72.6 11 0.00038 30.5 7.0 48 320-369 19-67 (73)
147 3c48_A Predicted glycosyltrans 72.4 11 0.00036 38.1 8.6 107 17-133 276-390 (438)
148 2lci_A Protein OR36; structura 72.2 7.8 0.00027 33.4 6.2 39 21-59 81-119 (134)
149 2cu7_A KIAA1915 protein; nucle 72.0 7.6 0.00026 30.9 5.9 48 319-371 9-56 (72)
150 3ezx_A MMCP 1, monomethylamine 71.5 5.9 0.0002 38.0 6.1 95 17-116 92-202 (215)
151 3ffs_A Inosine-5-monophosphate 71.5 38 0.0013 35.7 12.8 98 17-117 156-275 (400)
152 4fo4_A Inosine 5'-monophosphat 70.9 28 0.00097 36.2 11.6 97 17-117 120-240 (366)
153 3rht_A (gatase1)-like protein; 70.1 1.5 5.2E-05 43.7 1.6 50 17-70 4-57 (259)
154 3qhp_A Type 1 capsular polysac 69.5 15 0.0005 31.8 7.8 105 17-133 32-139 (166)
155 1v4v_A UDP-N-acetylglucosamine 68.1 32 0.0011 33.8 10.9 99 18-133 231-333 (376)
156 3dr5_A Putative O-methyltransf 67.7 14 0.00047 35.0 7.8 60 14-75 78-141 (221)
157 2r60_A Glycosyl transferase, g 66.4 17 0.00058 37.7 8.8 106 18-133 295-423 (499)
158 3bo9_A Putative nitroalkan dio 65.9 33 0.0011 34.7 10.6 81 34-117 117-205 (326)
159 3okp_A GDP-mannose-dependent a 65.8 8.4 0.00029 37.9 6.0 106 17-133 229-343 (394)
160 2l69_A Rossmann 2X3 fold prote 65.3 27 0.00093 30.1 8.2 42 18-59 3-44 (134)
161 2gjl_A Hypothetical protein PA 65.2 45 0.0015 33.4 11.4 81 33-116 110-200 (328)
162 4dzz_A Plasmid partitioning pr 65.0 12 0.00042 33.7 6.6 54 16-72 29-84 (206)
163 2d00_A V-type ATP synthase sub 64.8 30 0.001 29.9 8.6 74 16-96 2-80 (109)
164 3khj_A Inosine-5-monophosphate 64.7 39 0.0013 35.0 11.0 98 17-117 117-236 (361)
165 3ic5_A Putative saccharopine d 64.7 24 0.00081 28.6 7.7 88 17-112 5-95 (118)
166 1vgv_A UDP-N-acetylglucosamine 64.3 37 0.0013 33.3 10.5 99 18-133 239-341 (384)
167 3u3x_A Oxidoreductase; structu 64.2 11 0.00037 38.4 6.7 111 10-131 19-135 (361)
168 3ia7_A CALG4; glycosysltransfe 64.2 16 0.00056 36.1 7.9 33 17-49 4-40 (402)
169 3bw2_A 2-nitropropane dioxygen 63.6 43 0.0015 34.3 11.1 77 37-116 141-236 (369)
170 3o63_A Probable thiamine-phosp 63.1 44 0.0015 32.7 10.5 67 46-116 141-218 (243)
171 1geq_A Tryptophan synthase alp 62.9 13 0.00045 35.4 6.7 46 80-125 69-123 (248)
172 3beo_A UDP-N-acetylglucosamine 62.5 66 0.0023 31.3 11.9 67 51-133 274-341 (375)
173 3kp1_A D-ornithine aminomutase 61.3 36 0.0012 38.5 10.4 113 17-134 602-735 (763)
174 2z6i_A Trans-2-enoyl-ACP reduc 61.2 43 0.0015 33.7 10.5 79 35-116 104-190 (332)
175 2jjm_A Glycosyl transferase, g 59.9 11 0.00039 37.4 5.8 64 64-133 285-349 (394)
176 3r2g_A Inosine 5'-monophosphat 59.9 1.2E+02 0.0041 31.5 13.7 96 17-116 112-227 (361)
177 3ot5_A UDP-N-acetylglucosamine 59.7 65 0.0022 33.1 11.7 100 18-133 258-360 (403)
178 1thf_D HISF protein; thermophI 59.6 65 0.0022 30.5 11.0 67 49-117 152-224 (253)
179 2khz_A C-MYC-responsive protei 58.7 7.5 0.00026 35.7 3.9 115 14-134 8-151 (165)
180 1x41_A Transcriptional adaptor 58.4 20 0.00069 27.4 5.7 47 319-369 8-54 (60)
181 2x6q_A Trehalose-synthase TRET 57.6 59 0.002 32.4 10.7 105 17-133 262-378 (416)
182 2oo3_A Protein involved in cat 57.2 11 0.00038 38.1 5.1 57 17-73 113-169 (283)
183 1y0e_A Putative N-acetylmannos 56.8 36 0.0012 31.7 8.4 73 41-117 119-204 (223)
184 3db2_A Putative NADPH-dependen 56.8 62 0.0021 32.3 10.7 134 14-160 2-141 (354)
185 3c3y_A Pfomt, O-methyltransfer 56.0 33 0.0011 32.4 8.1 59 14-72 92-156 (237)
186 3ec7_A Putative dehydrogenase; 55.9 35 0.0012 34.5 8.7 137 15-160 21-163 (357)
187 2c6q_A GMP reductase 2; TIM ba 55.7 1.5E+02 0.0053 30.2 13.6 96 17-116 132-251 (351)
188 1sui_A Caffeoyl-COA O-methyltr 55.5 45 0.0015 31.9 9.0 61 14-74 101-167 (247)
189 3llv_A Exopolyphosphatase-rela 54.9 34 0.0012 29.1 7.4 51 18-71 7-57 (141)
190 3usb_A Inosine-5'-monophosphat 54.9 76 0.0026 34.3 11.6 98 17-117 268-388 (511)
191 2rir_A Dipicolinate synthase, 54.7 25 0.00086 34.7 7.3 101 13-116 3-125 (300)
192 1xm3_A Thiazole biosynthesis p 54.5 13 0.00044 36.7 5.0 74 41-117 126-207 (264)
193 3oy2_A Glycosyltransferase B73 54.4 23 0.00079 35.3 7.0 105 18-133 216-354 (413)
194 2ekc_A AQ_1548, tryptophan syn 54.2 36 0.0012 33.3 8.2 80 49-130 29-142 (262)
195 1ka9_F Imidazole glycerol phos 53.9 59 0.002 30.8 9.6 75 50-126 154-240 (252)
196 2iuy_A Avigt4, glycosyltransfe 53.3 25 0.00084 34.2 6.9 58 16-75 2-96 (342)
197 3h2s_A Putative NADH-flavin re 53.0 30 0.001 31.5 7.0 70 18-96 1-70 (224)
198 1qop_A Tryptophan synthase alp 52.3 22 0.00075 34.9 6.3 74 54-129 37-141 (268)
199 3f4w_A Putative hexulose 6 pho 51.5 1.1E+02 0.0039 28.0 10.9 97 18-117 78-187 (211)
200 2xag_B REST corepressor 1; ami 50.1 17 0.00058 39.4 5.4 50 317-371 378-427 (482)
201 2pyy_A Ionotropic glutamate re 49.9 49 0.0017 29.2 7.8 55 9-71 105-159 (228)
202 3l4e_A Uncharacterized peptida 49.5 57 0.0019 30.9 8.5 62 17-87 27-98 (206)
203 2lci_A Protein OR36; structura 49.3 1.3E+02 0.0043 25.9 9.8 112 18-134 3-123 (134)
204 3euw_A MYO-inositol dehydrogen 48.7 61 0.0021 32.2 9.1 133 16-160 3-140 (344)
205 1ujp_A Tryptophan synthase alp 48.7 18 0.00062 36.0 5.1 74 53-129 35-138 (271)
206 2v82_A 2-dehydro-3-deoxy-6-pho 48.6 31 0.001 32.1 6.4 76 35-117 95-176 (212)
207 3d4o_A Dipicolinate synthase s 48.6 28 0.00095 34.3 6.4 96 14-112 2-119 (293)
208 3uuw_A Putative oxidoreductase 48.5 68 0.0023 31.3 9.3 106 14-132 3-114 (308)
209 2iw5_B Protein corest, REST co 48.2 21 0.00073 35.1 5.3 50 317-371 131-180 (235)
210 4avf_A Inosine-5'-monophosphat 47.9 1.1E+02 0.0036 32.9 11.3 97 17-117 241-361 (490)
211 3tr6_A O-methyltransferase; ce 47.7 63 0.0022 29.5 8.4 61 14-74 86-151 (225)
212 3duw_A OMT, O-methyltransferas 47.5 74 0.0025 29.0 8.9 61 14-74 80-144 (223)
213 1h5y_A HISF; histidine biosynt 47.4 80 0.0027 29.3 9.2 66 49-116 155-226 (253)
214 3rot_A ABC sugar transporter, 47.4 60 0.002 30.9 8.5 79 17-99 3-97 (297)
215 2iuy_A Avigt4, glycosyltransfe 47.3 27 0.00092 33.9 6.1 106 17-133 188-307 (342)
216 2avd_A Catechol-O-methyltransf 46.9 51 0.0018 30.2 7.7 59 14-72 91-154 (229)
217 2cqq_A RSGI RUH-037, DNAJ homo 46.9 23 0.00079 28.5 4.5 44 321-369 10-56 (72)
218 1eep_A Inosine 5'-monophosphat 46.7 87 0.003 32.4 10.1 85 29-116 181-284 (404)
219 4e5v_A Putative THUA-like prot 46.6 19 0.00065 36.0 4.9 75 17-95 4-93 (281)
220 3mz0_A Inositol 2-dehydrogenas 46.5 1.2E+02 0.0041 30.1 10.9 134 17-160 2-142 (344)
221 3qz6_A HPCH/HPAI aldolase; str 46.2 1.4E+02 0.0047 29.3 11.0 96 33-131 6-110 (261)
222 2tps_A Protein (thiamin phosph 45.9 57 0.002 30.3 7.9 68 46-117 122-200 (227)
223 1jcn_A Inosine monophosphate d 45.5 1.2E+02 0.0041 32.3 11.3 84 29-116 283-386 (514)
224 3fwz_A Inner membrane protein 45.2 84 0.0029 27.0 8.4 26 88-115 98-123 (140)
225 3dzc_A UDP-N-acetylglucosamine 45.0 70 0.0024 32.7 9.0 41 88-133 326-366 (396)
226 4dim_A Phosphoribosylglycinami 44.8 1.1E+02 0.0036 30.9 10.3 33 14-47 4-36 (403)
227 3vnd_A TSA, tryptophan synthas 44.4 31 0.001 34.4 6.0 76 51-128 35-141 (267)
228 4a29_A Engineered retro-aldol 44.3 1.3E+02 0.0046 29.9 10.5 87 28-117 140-233 (258)
229 3pfn_A NAD kinase; structural 43.9 37 0.0013 35.5 6.7 99 18-135 39-165 (365)
230 3tfw_A Putative O-methyltransf 43.6 61 0.0021 30.7 7.8 61 14-75 85-148 (248)
231 3m2t_A Probable dehydrogenase; 43.6 76 0.0026 32.0 8.9 108 15-132 3-116 (359)
232 2o6l_A UDP-glucuronosyltransfe 43.3 1.2E+02 0.0042 26.3 9.3 65 63-133 86-153 (170)
233 2l2q_A PTS system, cellobiose- 43.2 43 0.0015 28.4 5.9 73 15-96 2-84 (109)
234 2nvw_A Galactose/lactose metab 43.2 56 0.0019 34.7 8.2 149 1-160 21-190 (479)
235 1qdl_B Protein (anthranilate s 43.1 9.8 0.00033 35.3 2.0 48 20-69 4-51 (195)
236 2w6r_A Imidazole glycerol phos 42.8 71 0.0024 30.5 8.2 67 49-117 157-229 (266)
237 1geq_A Tryptophan synthase alp 42.7 88 0.003 29.6 8.8 81 32-117 124-220 (248)
238 2gek_A Phosphatidylinositol ma 42.7 46 0.0016 32.7 7.0 35 13-47 16-58 (406)
239 1lst_A Lysine, arginine, ornit 42.6 62 0.0021 29.0 7.4 53 16-71 110-162 (239)
240 3kux_A Putative oxidoreductase 42.0 98 0.0034 30.9 9.4 105 14-131 4-114 (352)
241 3oti_A CALG3; calicheamicin, T 41.7 53 0.0018 32.8 7.4 33 17-49 20-56 (398)
242 3cbg_A O-methyltransferase; cy 41.6 90 0.0031 29.1 8.6 60 14-73 94-158 (232)
243 3s28_A Sucrose synthase 1; gly 41.6 1.1E+02 0.0039 35.0 10.9 108 18-134 604-730 (816)
244 3p9n_A Possible methyltransfer 41.2 50 0.0017 29.5 6.5 53 18-72 68-122 (189)
245 2gn4_A FLAA1 protein, UDP-GLCN 40.9 2.6E+02 0.009 27.5 12.4 84 8-96 12-99 (344)
246 3tsa_A SPNG, NDP-rhamnosyltran 40.7 50 0.0017 32.7 7.0 73 17-95 1-142 (391)
247 3dhn_A NAD-dependent epimerase 40.6 98 0.0034 28.0 8.5 72 17-96 4-75 (227)
248 3iwt_A 178AA long hypothetical 40.6 57 0.002 29.7 6.8 62 13-74 11-92 (178)
249 2elk_A SPCC24B10.08C protein; 40.4 25 0.00086 26.7 3.6 47 321-370 11-57 (58)
250 3e18_A Oxidoreductase; dehydro 40.0 1.8E+02 0.0062 29.1 11.1 105 16-132 4-113 (359)
251 1vc4_A Indole-3-glycerol phosp 39.7 48 0.0017 32.4 6.5 83 31-117 141-236 (254)
252 3kke_A LACI family transcripti 39.6 55 0.0019 31.3 6.8 66 28-98 32-104 (303)
253 3gjy_A Spermidine synthase; AP 39.6 45 0.0016 33.9 6.5 57 17-75 113-171 (317)
254 3l0g_A Nicotinate-nucleotide p 39.4 33 0.0011 35.0 5.3 91 20-115 181-277 (300)
255 1f0k_A MURG, UDP-N-acetylgluco 39.1 42 0.0014 32.7 6.0 52 79-131 264-322 (364)
256 3l6u_A ABC-type sugar transpor 39.1 72 0.0025 29.9 7.5 91 30-133 27-125 (293)
257 1rd5_A Tryptophan synthase alp 38.4 42 0.0015 32.4 5.8 39 79-117 189-230 (262)
258 2fhp_A Methylase, putative; al 38.4 1.4E+02 0.0048 25.9 8.9 68 18-86 68-138 (187)
259 4amg_A Snogd; transferase, pol 38.2 56 0.0019 32.3 6.8 38 12-49 17-58 (400)
260 2fn9_A Ribose ABC transporter, 38.1 1.7E+02 0.0058 27.3 10.0 65 29-97 20-92 (290)
261 4fzr_A SSFS6; structural genom 38.1 54 0.0018 32.7 6.7 33 16-48 14-50 (398)
262 3g1w_A Sugar ABC transporter; 38.1 1.2E+02 0.0042 28.6 9.0 65 30-98 23-96 (305)
263 4adt_A Pyridoxine biosynthetic 38.0 84 0.0029 31.7 8.1 71 44-117 129-238 (297)
264 3fwz_A Inner membrane protein 37.9 63 0.0021 27.8 6.3 74 18-100 8-83 (140)
265 2ift_A Putative methylase HI07 37.8 46 0.0016 30.4 5.7 66 18-86 77-147 (201)
266 3ew7_A LMO0794 protein; Q8Y8U8 37.8 1E+02 0.0035 27.5 8.1 69 18-96 1-69 (221)
267 3k9c_A Transcriptional regulat 37.8 60 0.0021 30.8 6.8 63 30-98 30-98 (289)
268 3qk7_A Transcriptional regulat 37.7 64 0.0022 30.7 6.9 63 29-97 28-97 (294)
269 3u81_A Catechol O-methyltransf 37.5 45 0.0015 30.7 5.6 83 14-96 80-170 (221)
270 2qfm_A Spermine synthase; sper 37.5 51 0.0017 34.4 6.5 56 18-73 212-277 (364)
271 3bbl_A Regulatory protein of L 37.1 1.1E+02 0.0039 28.7 8.6 64 28-97 25-96 (287)
272 2hnk_A SAM-dependent O-methylt 36.9 1.8E+02 0.0061 26.9 9.9 61 15-75 83-159 (239)
273 3ntv_A MW1564 protein; rossman 36.9 77 0.0026 29.5 7.2 64 17-86 95-162 (232)
274 3m9w_A D-xylose-binding peripl 36.8 76 0.0026 30.3 7.4 67 28-98 19-93 (313)
275 3egc_A Putative ribose operon 36.8 1.1E+02 0.0036 28.9 8.3 65 29-99 26-98 (291)
276 1ity_A TRF1; helix-turn-helix, 36.7 83 0.0028 24.4 6.2 58 315-377 6-63 (69)
277 3ajd_A Putative methyltransfer 36.5 1.1E+02 0.0037 29.5 8.5 55 18-72 109-165 (274)
278 3tqv_A Nicotinate-nucleotide p 36.5 52 0.0018 33.3 6.2 68 43-115 201-268 (287)
279 4hkt_A Inositol 2-dehydrogenas 36.0 1.1E+02 0.0037 30.1 8.6 131 17-160 3-138 (331)
280 1vrd_A Inosine-5'-monophosphat 35.7 2.2E+02 0.0077 30.0 11.4 97 17-116 249-368 (494)
281 3qvo_A NMRA family protein; st 35.7 39 0.0013 31.4 4.9 74 16-96 22-96 (236)
282 4gmf_A Yersiniabactin biosynth 35.6 1.6E+02 0.0054 30.4 9.9 102 17-134 7-118 (372)
283 3ius_A Uncharacterized conserv 35.6 28 0.00097 33.0 4.0 67 17-96 5-71 (286)
284 3orh_A Guanidinoacetate N-meth 35.3 75 0.0026 29.9 6.9 55 18-74 84-139 (236)
285 3rc1_A Sugar 3-ketoreductase; 35.1 79 0.0027 31.8 7.4 133 15-160 25-164 (350)
286 3sc6_A DTDP-4-dehydrorhamnose 34.8 67 0.0023 30.3 6.6 54 18-73 6-66 (287)
287 3brq_A HTH-type transcriptiona 34.8 1.2E+02 0.0041 28.3 8.3 67 28-97 38-110 (296)
288 3bul_A Methionine synthase; tr 34.8 81 0.0028 34.9 7.9 109 17-132 98-223 (579)
289 1qop_A Tryptophan synthase alp 34.7 1.1E+02 0.0037 29.9 8.1 38 80-117 194-234 (268)
290 1ka9_F Imidazole glycerol phos 34.7 1.1E+02 0.0036 29.0 7.9 66 49-117 32-104 (252)
291 3c3k_A Alanine racemase; struc 34.6 1.3E+02 0.0044 28.3 8.5 64 29-97 26-95 (285)
292 4fxs_A Inosine-5'-monophosphat 34.6 2.1E+02 0.0071 30.7 11.0 98 17-117 243-363 (496)
293 1ypf_A GMP reductase; GUAC, pu 34.6 3.7E+02 0.013 27.0 12.7 88 25-116 132-238 (336)
294 1vzw_A Phosphoribosyl isomeras 34.5 1.2E+02 0.0041 28.6 8.2 67 49-117 147-222 (244)
295 3q2i_A Dehydrogenase; rossmann 34.5 1.5E+02 0.0053 29.4 9.5 132 16-159 12-149 (354)
296 1z0s_A Probable inorganic poly 34.3 15 0.00051 37.0 1.8 90 18-133 30-122 (278)
297 3paj_A Nicotinate-nucleotide p 34.2 92 0.0031 32.0 7.7 92 19-115 204-301 (320)
298 2fpo_A Methylase YHHF; structu 34.1 92 0.0032 28.4 7.2 52 18-72 78-131 (202)
299 2w6r_A Imidazole glycerol phos 34.1 75 0.0026 30.4 6.8 69 49-119 31-105 (266)
300 1dbq_A Purine repressor; trans 34.0 99 0.0034 28.9 7.6 66 29-97 25-96 (289)
301 3l9w_A Glutathione-regulated p 34.0 1.2E+02 0.0039 31.8 8.7 90 17-116 27-121 (413)
302 1p9l_A Dihydrodipicolinate red 33.9 1.4E+02 0.0048 29.1 8.7 74 18-96 1-77 (245)
303 4ew6_A D-galactose-1-dehydroge 33.8 90 0.0031 31.1 7.6 131 13-160 21-156 (330)
304 2v5j_A 2,4-dihydroxyhept-2-ENE 33.7 3.2E+02 0.011 27.1 11.5 93 33-129 30-131 (287)
305 1x1o_A Nicotinate-nucleotide p 33.6 1.1E+02 0.0039 30.6 8.2 92 19-116 168-267 (286)
306 3ezy_A Dehydrogenase; structur 33.2 1.1E+02 0.0039 30.2 8.2 132 17-160 2-139 (344)
307 3s83_A Ggdef family protein; s 33.2 77 0.0026 30.1 6.7 97 30-129 141-253 (259)
308 1qo2_A Molecule: N-((5-phospho 32.8 2E+02 0.0068 27.0 9.5 74 49-126 145-238 (241)
309 3czc_A RMPB; alpha/beta sandwi 32.8 1.7E+02 0.0057 24.7 8.1 79 17-105 18-103 (110)
310 2vws_A YFAU, 2-keto-3-deoxy su 32.7 3.5E+02 0.012 26.2 11.7 93 33-129 9-110 (267)
311 2dri_A D-ribose-binding protei 32.6 1.3E+02 0.0044 28.1 8.1 65 29-97 19-91 (271)
312 1zh8_A Oxidoreductase; TM0312, 32.5 1.5E+02 0.0051 29.5 9.0 135 15-160 16-157 (340)
313 1f0k_A MURG, UDP-N-acetylgluco 32.5 1.5E+02 0.0053 28.5 8.9 31 18-48 7-41 (364)
314 3k4h_A Putative transcriptiona 32.4 86 0.0029 29.4 6.8 65 28-98 30-102 (292)
315 3e8x_A Putative NAD-dependent 32.3 44 0.0015 30.9 4.6 73 15-96 19-92 (236)
316 1pii_A N-(5'phosphoribosyl)ant 32.2 2.3E+02 0.0079 30.2 10.7 85 29-117 145-236 (452)
317 1yxy_A Putative N-acetylmannos 32.1 1.6E+02 0.0055 27.5 8.7 83 31-117 122-215 (234)
318 3sho_A Transcriptional regulat 32.1 1.4E+02 0.005 26.5 8.0 94 19-120 41-141 (187)
319 3tb6_A Arabinose metabolism tr 32.0 1.4E+02 0.0048 27.8 8.3 69 28-98 32-109 (298)
320 3jy6_A Transcriptional regulat 32.0 1.5E+02 0.0051 27.6 8.5 63 29-98 25-95 (276)
321 3c0k_A UPF0064 protein YCCW; P 31.9 97 0.0033 31.6 7.6 54 18-71 244-301 (396)
322 1zx0_A Guanidinoacetate N-meth 31.8 92 0.0031 28.8 6.8 50 19-70 85-135 (236)
323 3c6k_A Spermine synthase; sper 31.6 82 0.0028 33.1 7.0 57 18-74 229-295 (381)
324 3huu_A Transcription regulator 31.4 1.5E+02 0.005 28.2 8.4 64 29-98 45-116 (305)
325 2v25_A Major cell-binding fact 31.4 1.1E+02 0.0037 27.6 7.1 59 9-71 141-201 (259)
326 1wl8_A GMP synthase [glutamine 31.4 35 0.0012 31.1 3.8 71 20-94 3-78 (189)
327 1i1q_B Anthranilate synthase c 31.1 65 0.0022 29.5 5.5 51 18-69 1-54 (192)
328 1qpo_A Quinolinate acid phosph 31.1 1.1E+02 0.0036 30.8 7.4 93 19-116 167-268 (284)
329 2f6u_A GGGPS, (S)-3-O-geranylg 31.1 42 0.0014 32.8 4.4 61 51-119 23-86 (234)
330 2i7c_A Spermidine synthase; tr 31.0 97 0.0033 30.2 7.1 56 17-75 102-163 (283)
331 3w01_A Heptaprenylglyceryl pho 30.9 35 0.0012 33.5 3.8 57 53-117 28-87 (235)
332 3moi_A Probable dehydrogenase; 30.9 1.3E+02 0.0044 30.5 8.3 104 17-132 2-112 (387)
333 1h5y_A HISF; histidine biosynt 30.9 1.7E+02 0.0057 27.1 8.5 68 48-117 33-106 (253)
334 3l49_A ABC sugar (ribose) tran 30.8 60 0.0021 30.5 5.4 65 29-97 23-95 (291)
335 1ep3_A Dihydroorotate dehydrog 30.7 1.6E+02 0.0055 28.6 8.7 85 30-116 153-269 (311)
336 3e3m_A Transcriptional regulat 30.5 1.1E+02 0.0037 30.1 7.5 61 29-95 88-156 (355)
337 4had_A Probable oxidoreductase 30.2 79 0.0027 31.3 6.4 135 14-160 20-161 (350)
338 3kjx_A Transcriptional regulat 30.1 1.1E+02 0.0038 29.8 7.4 62 28-95 85-154 (344)
339 1h1y_A D-ribulose-5-phosphate 30.0 84 0.0029 29.7 6.3 80 34-117 106-201 (228)
340 2f62_A Nucleoside 2-deoxyribos 30.0 69 0.0024 29.4 5.4 71 24-98 22-108 (161)
341 2cjj_A Radialis; plant develop 30.0 71 0.0024 26.9 5.1 48 321-370 10-58 (93)
342 3abi_A Putative uncharacterize 29.9 1.1E+02 0.0038 30.8 7.5 95 17-122 16-112 (365)
343 1rd5_A Tryptophan synthase alp 29.9 73 0.0025 30.7 5.9 48 79-127 82-135 (262)
344 2ho3_A Oxidoreductase, GFO/IDH 29.8 2.8E+02 0.0095 27.1 10.3 103 17-130 1-108 (325)
345 3llv_A Exopolyphosphatase-rela 29.3 1.2E+02 0.0042 25.5 6.7 89 17-116 29-122 (141)
346 1mjf_A Spermidine synthase; sp 29.3 1.4E+02 0.0049 28.9 8.0 53 17-74 98-163 (281)
347 1ii5_A SLR1257 protein; membra 29.2 1.3E+02 0.0045 26.4 7.2 49 16-71 115-163 (233)
348 2l69_A Rossmann 2X3 fold prote 29.1 1.3E+02 0.0043 25.9 6.4 40 18-57 78-117 (134)
349 1qpz_A PURA, protein (purine n 29.0 1.1E+02 0.0038 29.7 7.2 66 29-97 76-147 (340)
350 3tdn_A FLR symmetric alpha-bet 28.9 1.3E+02 0.0043 28.6 7.4 66 49-116 36-107 (247)
351 4gud_A Imidazole glycerol phos 28.9 36 0.0012 31.5 3.4 43 19-69 4-46 (211)
352 1dxe_A 2-dehydro-3-deoxy-galac 28.9 4E+02 0.014 25.6 11.1 93 33-128 10-110 (256)
353 2y88_A Phosphoribosyl isomeras 28.8 2.2E+02 0.0076 26.5 9.1 67 49-117 150-225 (244)
354 3c3p_A Methyltransferase; NP_9 28.8 1.5E+02 0.0051 26.7 7.6 66 14-86 78-146 (210)
355 2b78_A Hypothetical protein SM 28.8 91 0.0031 32.0 6.7 53 19-71 237-293 (385)
356 3s2u_A UDP-N-acetylglucosamine 28.7 1.5E+02 0.005 29.7 8.2 55 79-133 262-323 (365)
357 1wa3_A 2-keto-3-deoxy-6-phosph 28.7 2.6E+02 0.0089 25.3 9.3 78 46-127 17-99 (205)
358 2h3h_A Sugar ABC transporter, 28.7 2.3E+02 0.0078 26.9 9.3 65 29-97 18-91 (313)
359 2ioy_A Periplasmic sugar-bindi 28.6 1.1E+02 0.0039 28.6 7.0 64 29-96 19-90 (283)
360 3iwp_A Copper homeostasis prot 28.5 2.1E+02 0.0071 28.9 9.0 88 41-129 39-149 (287)
361 1tqj_A Ribulose-phosphate 3-ep 28.3 76 0.0026 30.4 5.7 69 48-119 17-94 (230)
362 2yln_A Putative ABC transporte 28.3 1E+02 0.0034 29.2 6.6 108 8-137 156-264 (283)
363 2iks_A DNA-binding transcripti 28.2 3.7E+02 0.013 25.1 11.4 65 29-98 38-110 (293)
364 3h5o_A Transcriptional regulat 28.1 2.7E+02 0.0092 26.9 9.8 66 27-96 78-149 (339)
365 3ju3_A Probable 2-oxoacid ferr 27.8 1.5E+02 0.0053 25.2 7.1 81 50-132 28-116 (118)
366 2as0_A Hypothetical protein PH 27.8 1.3E+02 0.0043 30.7 7.6 54 18-71 241-297 (396)
367 3cvo_A Methyltransferase-like 27.8 1.5E+02 0.0052 28.1 7.6 113 17-130 51-198 (202)
368 3cni_A Putative ABC type-2 tra 27.8 1.3E+02 0.0044 26.5 6.7 55 15-75 8-64 (156)
369 3axs_A Probable N(2),N(2)-dime 27.6 77 0.0026 33.1 6.0 74 18-98 78-160 (392)
370 1hdo_A Biliverdin IX beta redu 27.5 77 0.0026 28.0 5.3 72 18-96 4-75 (206)
371 1viz_A PCRB protein homolog; s 27.5 55 0.0019 32.1 4.6 61 52-120 24-87 (240)
372 3o74_A Fructose transport syst 27.4 89 0.0031 28.8 5.9 67 29-98 20-92 (272)
373 3sr7_A Isopentenyl-diphosphate 27.4 1.4E+02 0.0046 31.0 7.8 85 29-117 194-307 (365)
374 1wxx_A TT1595, hypothetical pr 27.4 1.7E+02 0.0059 29.6 8.5 54 18-71 232-287 (382)
375 3e9m_A Oxidoreductase, GFO/IDH 27.4 92 0.0031 30.9 6.3 133 16-160 4-142 (330)
376 2ixa_A Alpha-N-acetylgalactosa 27.3 2.4E+02 0.0082 29.2 9.8 114 14-131 17-138 (444)
377 3ip3_A Oxidoreductase, putativ 27.2 86 0.0029 31.1 6.1 132 17-160 2-144 (337)
378 2rgy_A Transcriptional regulat 27.1 1.4E+02 0.0049 28.1 7.4 63 29-97 26-99 (290)
379 3clk_A Transcription regulator 27.0 1.5E+02 0.005 27.9 7.5 63 29-97 26-97 (290)
380 1tlt_A Putative oxidoreductase 27.0 3E+02 0.01 26.8 9.9 102 16-130 4-111 (319)
381 2x4g_A Nucleoside-diphosphate- 26.9 90 0.0031 30.2 6.0 74 16-96 12-85 (342)
382 3gnn_A Nicotinate-nucleotide p 26.8 1.7E+02 0.0057 29.7 8.1 66 44-114 213-278 (298)
383 8abp_A L-arabinose-binding pro 26.8 1.2E+02 0.004 28.7 6.7 64 29-96 20-90 (306)
384 2qh8_A Uncharacterized protein 26.7 1.1E+02 0.0038 29.3 6.6 62 29-97 25-99 (302)
385 3plv_C 66 kDa U4/U6.U5 small n 26.7 22 0.00075 22.5 0.9 7 527-533 14-20 (21)
386 4fzr_A SSFS6; structural genom 26.7 93 0.0032 30.9 6.2 55 79-133 310-367 (398)
387 1iow_A DD-ligase, DDLB, D-ALA\ 26.6 45 0.0015 32.0 3.7 53 18-72 3-63 (306)
388 3i6i_A Putative leucoanthocyan 26.6 2.9E+02 0.0098 26.9 9.8 73 17-96 10-91 (346)
389 2hy7_A Glucuronosyltransferase 26.5 63 0.0022 32.9 5.0 69 49-133 274-351 (406)
390 3r6d_A NAD-dependent epimerase 26.4 3.5E+02 0.012 24.2 10.6 74 19-97 7-82 (221)
391 2fli_A Ribulose-phosphate 3-ep 26.4 85 0.0029 29.0 5.5 79 33-116 101-197 (220)
392 3m2p_A UDP-N-acetylglucosamine 26.3 1.8E+02 0.0061 27.8 8.0 69 17-96 2-70 (311)
393 2d9a_A B-MYB, MYB-related prot 26.3 1.4E+02 0.0048 22.3 5.8 46 319-368 8-53 (60)
394 3lft_A Uncharacterized protein 26.2 1.2E+02 0.004 29.0 6.7 62 28-96 18-91 (295)
395 1ws6_A Methyltransferase; stru 26.2 1.1E+02 0.0039 26.0 6.0 54 18-71 64-118 (171)
396 1ydw_A AX110P-like protein; st 26.1 2.2E+02 0.0076 28.3 9.0 105 14-128 3-115 (362)
397 3r75_A Anthranilate/para-amino 26.1 77 0.0026 35.4 5.9 72 16-94 445-527 (645)
398 3d8u_A PURR transcriptional re 26.0 1.6E+02 0.0053 27.3 7.3 63 29-97 21-91 (275)
399 2fvy_A D-galactose-binding per 26.0 1.4E+02 0.0048 28.1 7.1 66 29-99 20-95 (309)
400 3uug_A Multiple sugar-binding 25.9 1.2E+02 0.0039 29.1 6.6 66 29-98 21-94 (330)
401 3m6w_A RRNA methylase; rRNA me 25.9 96 0.0033 33.2 6.4 55 15-72 124-179 (464)
402 2esr_A Methyltransferase; stru 25.8 1.2E+02 0.0042 26.3 6.2 51 18-71 55-108 (177)
403 2pju_A Propionate catabolism o 25.8 2.3E+02 0.0079 27.2 8.6 54 16-69 11-69 (225)
404 3l9w_A Glutathione-regulated p 25.8 98 0.0034 32.3 6.4 98 17-123 4-107 (413)
405 3cea_A MYO-inositol 2-dehydrog 25.8 2.2E+02 0.0074 28.0 8.7 104 16-129 7-116 (346)
406 3hcw_A Maltose operon transcri 25.7 2.2E+02 0.0077 26.8 8.6 64 29-98 30-101 (295)
407 3f9i_A 3-oxoacyl-[acyl-carrier 25.5 1.5E+02 0.0053 27.4 7.2 80 15-96 12-92 (249)
408 3gv0_A Transcriptional regulat 25.5 1.9E+02 0.0064 27.2 7.9 63 30-98 29-99 (288)
409 2ydy_A Methionine adenosyltran 25.5 1.3E+02 0.0045 28.7 6.9 32 17-48 2-33 (315)
410 3bt7_A TRNA (uracil-5-)-methyl 25.4 2.8E+02 0.0097 27.9 9.7 77 18-96 236-326 (369)
411 1thf_D HISF protein; thermophI 25.4 2.5E+02 0.0084 26.3 8.7 66 49-117 31-103 (253)
412 2dwc_A PH0318, 433AA long hypo 25.1 1.4E+02 0.0049 30.4 7.5 32 16-48 18-49 (433)
413 1req_B Methylmalonyl-COA mutas 25.0 77 0.0026 35.5 5.6 96 30-129 527-630 (637)
414 3h5l_A Putative branched-chain 25.0 1.9E+02 0.0064 28.9 8.2 66 18-87 165-241 (419)
415 2fep_A Catabolite control prot 25.0 2E+02 0.0067 27.1 8.0 63 29-97 34-104 (289)
416 2xxa_A Signal recognition part 25.0 46 0.0016 35.2 3.7 53 17-71 129-191 (433)
417 2eqr_A N-COR1, N-COR, nuclear 24.9 60 0.002 24.9 3.4 50 316-373 9-58 (61)
418 3dbi_A Sugar-binding transcrip 24.9 3.2E+02 0.011 26.2 9.7 66 28-98 80-153 (338)
419 1guu_A C-MYB, MYB proto-oncoge 24.8 1.3E+02 0.0045 21.7 5.2 46 319-368 3-48 (52)
420 3brs_A Periplasmic binding pro 24.7 1.4E+02 0.0049 27.7 6.9 64 30-97 26-99 (289)
421 1xea_A Oxidoreductase, GFO/IDH 24.6 4.7E+02 0.016 25.4 10.9 132 17-160 2-138 (323)
422 3e82_A Putative oxidoreductase 24.6 1.6E+02 0.0053 29.7 7.5 131 16-160 6-142 (364)
423 2p10_A MLL9387 protein; putati 24.6 3.5E+02 0.012 27.4 9.8 76 39-117 161-259 (286)
424 3o9z_A Lipopolysaccaride biosy 24.5 89 0.0031 30.9 5.6 134 17-161 3-148 (312)
425 3rd5_A Mypaa.01249.C; ssgcid, 24.5 1.9E+02 0.0063 27.8 7.8 78 16-96 15-94 (291)
426 2xvy_A Chelatase, putative; me 24.4 39 0.0013 32.7 2.8 43 507-549 25-82 (269)
427 1qyd_A Pinoresinol-lariciresin 24.4 4.5E+02 0.015 24.7 11.0 73 17-96 4-84 (313)
428 2yqk_A Arginine-glutamic acid 24.4 60 0.0021 25.1 3.4 50 318-374 8-57 (63)
429 3kjh_A CO dehydrogenase/acetyl 24.3 1E+02 0.0035 28.1 5.7 21 50-72 120-140 (254)
430 3vue_A GBSS-I, granule-bound s 24.2 1.1E+02 0.0039 32.8 6.7 106 18-133 357-476 (536)
431 3o07_A Pyridoxine biosynthesis 24.1 1.1E+02 0.0039 31.0 6.1 53 80-132 187-249 (291)
432 1wgx_A KIAA1903 protein; MYB D 24.0 1E+02 0.0034 25.0 4.7 46 321-368 10-56 (73)
433 3gyb_A Transcriptional regulat 24.0 78 0.0027 29.6 4.8 63 28-98 22-89 (280)
434 1kjq_A GART 2, phosphoribosylg 24.0 1.6E+02 0.0055 29.4 7.5 33 16-49 10-42 (391)
435 1j8m_F SRP54, signal recogniti 24.0 64 0.0022 32.1 4.4 54 16-71 125-188 (297)
436 3g8r_A Probable spore coat pol 23.8 1.8E+02 0.0061 30.1 7.8 76 27-107 77-154 (350)
437 3qvq_A Phosphodiesterase OLEI0 23.8 3.8E+02 0.013 25.5 9.8 37 88-127 210-246 (252)
438 1l5x_A SurviVal protein E; str 23.8 1.3E+02 0.0046 30.1 6.6 42 52-97 76-128 (280)
439 3i6v_A Periplasmic His/Glu/Gln 23.7 1.5E+02 0.0052 26.7 6.6 98 16-137 106-204 (232)
440 3nav_A Tryptophan synthase alp 23.7 62 0.0021 32.2 4.2 56 78-133 83-148 (271)
441 1jvn_A Glutamine, bifunctional 23.7 2.3E+02 0.0079 30.7 9.1 76 50-127 454-542 (555)
442 3gbv_A Putative LACI-family tr 23.7 2.3E+02 0.008 26.3 8.2 67 28-98 26-104 (304)
443 1qap_A Quinolinic acid phospho 23.5 2.5E+02 0.0087 28.1 8.7 89 20-115 182-278 (296)
444 2o07_A Spermidine synthase; st 23.5 1.7E+02 0.0057 29.0 7.3 55 17-74 119-179 (304)
445 1p0k_A Isopentenyl-diphosphate 23.4 5.5E+02 0.019 25.6 11.4 86 29-117 166-280 (349)
446 3ceu_A Thiamine phosphate pyro 23.3 1.1E+02 0.0039 28.4 5.8 66 46-116 94-171 (210)
447 2fqx_A Membrane lipoprotein TM 23.3 1.9E+02 0.0065 28.2 7.7 64 30-97 26-95 (318)
448 2x0d_A WSAF; GT4 family, trans 23.1 97 0.0033 31.8 5.7 73 50-133 305-378 (413)
449 1xj5_A Spermidine synthase 1; 23.0 2.1E+02 0.007 28.9 8.0 57 17-75 144-206 (334)
450 2h6r_A Triosephosphate isomera 23.0 2.9E+02 0.0098 26.0 8.6 81 34-117 104-199 (219)
451 3aon_B V-type sodium ATPase su 22.9 68 0.0023 27.9 3.8 72 17-96 2-77 (115)
452 2qjg_A Putative aldolase MJ040 22.8 2.4E+02 0.008 27.0 8.1 58 52-116 170-236 (273)
453 3ksm_A ABC-type sugar transpor 22.8 1.4E+02 0.0049 27.4 6.4 66 29-98 18-94 (276)
454 2igt_A SAM dependent methyltra 22.8 85 0.0029 31.6 5.1 55 17-71 175-233 (332)
455 3rsc_A CALG2; TDP, enediyne, s 22.7 2.1E+02 0.0073 28.3 8.0 33 17-49 20-56 (415)
456 2h0a_A TTHA0807, transcription 22.6 1.4E+02 0.0049 27.5 6.3 63 29-97 17-87 (276)
457 3tha_A Tryptophan synthase alp 22.5 64 0.0022 31.9 4.0 48 79-126 78-132 (252)
458 2qu7_A Putative transcriptiona 22.5 1.3E+02 0.0043 28.3 6.0 63 29-97 25-93 (288)
459 2vsy_A XCC0866; transferase, g 22.5 1.7E+02 0.0059 30.4 7.6 107 17-133 406-521 (568)
460 3e48_A Putative nucleoside-dip 22.4 2.3E+02 0.0079 26.6 7.9 72 18-96 1-73 (289)
461 3ovp_A Ribulose-phosphate 3-ep 22.4 3.8E+02 0.013 25.5 9.4 80 33-117 104-197 (228)
462 2y7i_A STM4351; arginine-bindi 22.4 1.7E+02 0.0058 25.7 6.6 55 11-71 107-161 (229)
463 1uir_A Polyamine aminopropyltr 22.3 2.7E+02 0.0091 27.5 8.6 55 17-74 101-162 (314)
464 3sjm_A Telomeric repeat-bindin 22.3 1.7E+02 0.006 22.5 5.7 50 319-373 11-60 (64)
465 3ajx_A 3-hexulose-6-phosphate 22.2 2.4E+02 0.0083 25.5 7.8 85 28-116 90-185 (207)
466 3dii_A Short-chain dehydrogena 22.1 3.4E+02 0.012 25.2 9.0 78 17-96 2-83 (247)
467 1ka9_H Imidazole glycerol phos 22.1 46 0.0016 30.7 2.7 32 18-49 3-34 (200)
468 3o4f_A Spermidine synthase; am 22.1 77 0.0026 32.0 4.5 57 16-75 106-169 (294)
469 4e4t_A Phosphoribosylaminoimid 22.1 2.7E+02 0.0093 28.7 8.9 33 15-48 33-65 (419)
470 1u0t_A Inorganic polyphosphate 22.0 85 0.0029 31.3 4.8 99 17-134 4-131 (307)
471 1gox_A (S)-2-hydroxy-acid oxid 21.9 2.5E+02 0.0087 28.6 8.6 84 31-117 215-309 (370)
472 3lyh_A Cobalamin (vitamin B12) 21.8 64 0.0022 27.5 3.4 41 508-549 25-65 (126)
473 3ce9_A Glycerol dehydrogenase; 21.8 1.3E+02 0.0044 30.3 6.2 72 18-96 35-120 (354)
474 2ffh_A Protein (FFH); SRP54, s 21.8 1.3E+02 0.0043 31.9 6.3 54 16-71 125-188 (425)
475 3sz8_A 2-dehydro-3-deoxyphosph 21.7 2.6E+02 0.0089 28.1 8.3 65 51-117 151-242 (285)
476 1ujp_A Tryptophan synthase alp 21.7 1.9E+02 0.0065 28.5 7.3 92 20-117 123-229 (271)
477 3sgz_A Hydroxyacid oxidase 2; 21.7 3.3E+02 0.011 28.1 9.3 83 32-117 208-301 (352)
478 4gnr_A ABC transporter substra 21.7 1.8E+02 0.006 28.2 7.0 85 18-107 145-241 (353)
479 3ohs_X Trans-1,2-dihydrobenzen 21.7 2E+02 0.0067 28.4 7.5 131 17-159 2-140 (334)
480 1fy2_A Aspartyl dipeptidase; s 21.7 1.1E+02 0.0037 29.2 5.4 63 16-87 30-98 (229)
481 3vzx_A Heptaprenylglyceryl pho 21.6 51 0.0018 32.2 3.0 57 53-117 23-82 (228)
482 2gpy_A O-methyltransferase; st 21.5 2.1E+02 0.0071 26.2 7.2 66 17-86 78-146 (233)
483 1xq6_A Unknown protein; struct 21.5 3.4E+02 0.011 24.5 8.6 73 16-96 3-77 (253)
484 1gud_A ALBP, D-allose-binding 21.4 2E+02 0.0068 27.1 7.2 97 30-134 20-128 (288)
485 1zco_A 2-dehydro-3-deoxyphosph 21.4 2.6E+02 0.0087 27.5 8.1 66 49-116 142-226 (262)
486 3snr_A Extracellular ligand-bi 21.3 1.4E+02 0.0047 28.6 6.1 81 18-103 136-231 (362)
487 1iy9_A Spermidine synthase; ro 21.3 1.6E+02 0.0056 28.5 6.6 56 17-75 99-160 (275)
488 3gdo_A Uncharacterized oxidore 21.2 1.7E+02 0.0058 29.3 7.0 104 16-132 4-113 (358)
489 3r3h_A O-methyltransferase, SA 21.2 58 0.002 31.0 3.3 60 14-73 82-146 (242)
490 4htf_A S-adenosylmethionine-de 21.0 83 0.0028 29.9 4.4 67 17-86 90-159 (285)
491 3tql_A Arginine-binding protei 20.9 2.1E+02 0.0071 24.9 6.8 107 16-137 108-215 (227)
492 1l3i_A Precorrin-6Y methyltran 20.9 2.5E+02 0.0085 24.1 7.2 62 18-86 56-120 (192)
493 1i4n_A Indole-3-glycerol phosp 20.8 3.7E+02 0.013 26.3 9.1 87 28-117 137-230 (251)
494 3v5n_A Oxidoreductase; structu 20.8 2.6E+02 0.0088 28.7 8.4 109 14-130 34-156 (417)
495 1xx6_A Thymidine kinase; NESG, 20.8 56 0.0019 30.5 3.0 76 16-95 35-115 (191)
496 3nkl_A UDP-D-quinovosamine 4-d 20.7 2.5E+02 0.0084 23.6 7.0 31 17-47 4-34 (141)
497 2vpi_A GMP synthase; guanine m 20.6 45 0.0015 31.6 2.3 33 16-48 23-55 (218)
498 2p2s_A Putative oxidoreductase 20.6 84 0.0029 31.1 4.5 106 16-131 3-113 (336)
499 1izc_A Macrophomate synthase i 20.5 6.3E+02 0.022 25.6 11.1 85 43-130 45-138 (339)
500 4fxs_A Inosine-5'-monophosphat 20.5 1.2E+02 0.0042 32.5 6.0 62 51-116 233-299 (496)
No 1
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.95 E-value=4.3e-29 Score=200.90 Aligned_cols=62 Identities=55% Similarity=0.923 Sum_probs=59.6
Q ss_pred cCCCCceecCHHHHHHHHHHHHHhCCCCCCChHHHhhcCCCCCCHHHHHHhhhhhhhhhccc
Q 008619 314 NRKKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHI 375 (559)
Q Consensus 314 ~~kk~r~~Wt~~lh~~Fv~av~~lg~~~a~pk~il~~m~v~~lt~~~v~shlQkyr~~~~~~ 375 (559)
+.+|+|++||+|||++||+||++||.++|+||+||++|||+|||++||||||||||++++++
T Consensus 2 ~~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r~ 63 (64)
T 1irz_A 2 AQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV 63 (64)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHcc
Confidence 45799999999999999999999999999999999999999999999999999999999875
No 2
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=99.91 E-value=2.6e-24 Score=195.95 Aligned_cols=118 Identities=14% Similarity=0.295 Sum_probs=110.2
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhCCCE-EEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-----
Q 008619 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDYI-VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----- 87 (559)
Q Consensus 14 ~p~glrVLIVDDD~~~~~~L~~~L~~~gy~-V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----- 87 (559)
|.+++|||||||++..+..++.+|+..||. |.++.++.+|++.+++ ..|||||+|+.||+ +||+++++.||
T Consensus 9 m~k~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~--~~~DlillD~~MP~-mdG~el~~~ir~~~~~ 85 (134)
T 3to5_A 9 LNKNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKK--GDFDFVVTDWNMPG-MQGIDLLKNIRADEEL 85 (134)
T ss_dssp CCTTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHH--HCCSEEEEESCCSS-SCHHHHHHHHHHSTTT
T ss_pred hCCCCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHh--CCCCEEEEcCCCCC-CCHHHHHHHHHhCCCC
Confidence 446789999999999999999999999996 6689999999999999 78999999999999 99999999985
Q ss_pred -CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008619 88 -DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 88 -diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
++|||++|++.+.+.+.+++++||+|||.|||+.++|..+|+++++|
T Consensus 86 ~~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~R 133 (134)
T 3to5_A 86 KHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFER 133 (134)
T ss_dssp TTCCEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC-
T ss_pred CCCeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 69999999999999999999999999999999999999999988754
No 3
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=99.85 E-value=1.6e-20 Score=162.50 Aligned_cols=113 Identities=21% Similarity=0.311 Sum_probs=107.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC------CCcE
Q 008619 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DLPT 91 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir------diPV 91 (559)
.+||||||++..+..++.+|+..||+|..+.++.+|++.+.+ ..||+||+|+.||+ ++|+++++.++ ++||
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~--~~~dlvllD~~~p~-~~g~~~~~~l~~~~~~~~~pi 79 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSE--FTPDLIVLXIMMPV-MDGFTVLKKLQEKEEWKRIPV 79 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTT--BCCSEEEECSCCSS-SCHHHHHHHHHTSTTTTTSCE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHh--cCCCEEEEeccCCC-CcHHHHHHHHHhcccccCCCE
Confidence 589999999999999999999999999999999999999988 78999999999999 99999999884 5899
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008619 92 IITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 92 ImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
|++|+..+.+...++++.||++||.||++.++|..+++++++
T Consensus 80 i~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 80 IVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp EEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred EEEecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999988764
No 4
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=99.85 E-value=2.3e-20 Score=164.49 Aligned_cols=117 Identities=20% Similarity=0.306 Sum_probs=110.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC------CC
Q 008619 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DL 89 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir------di 89 (559)
+..+|||||||+..+..+..+|+..||+|..+.++.+|++.+.+ ..||+||+|+.||+ ++|+++++.++ ++
T Consensus 3 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvl~D~~lp~-~~g~~~~~~lr~~~~~~~~ 79 (136)
T 3t6k_A 3 KPHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYK--NLPDALICDVLLPG-IDGYTLCKRVRQHPLTKTL 79 (136)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--SCCSEEEEESCCSS-SCHHHHHHHHHHSGGGTTC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh--CCCCEEEEeCCCCC-CCHHHHHHHHHcCCCcCCc
Confidence 35799999999999999999999999999999999999999998 78999999999999 99999999885 58
Q ss_pred cEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008619 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (559)
Q Consensus 90 PVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~ 135 (559)
|||++|+..+.+...++++.||++||.||++.++|..+++.++++.
T Consensus 80 pii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~~ 125 (136)
T 3t6k_A 80 PILMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILART 125 (136)
T ss_dssp CEEEEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC-
T ss_pred cEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999988754
No 5
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=99.84 E-value=2.8e-20 Score=160.24 Aligned_cols=113 Identities=19% Similarity=0.326 Sum_probs=107.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC---CCcEEEE
Q 008619 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTIIT 94 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir---diPVImL 94 (559)
.+||||||++..+..++.+|+..||+|..+.++.+|++.+.+ ..||+||+|+.||+ ++|+++++.++ ++|||++
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlii~D~~~p~-~~g~~~~~~lr~~~~~~ii~~ 79 (120)
T 3f6p_A 3 KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEE--LQPDLILLDIMLPN-KDGVEVCREVRKKYDMPIIML 79 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHT--TCCSEEEEETTSTT-THHHHHHHHHHTTCCSCEEEE
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCCEEEE
Confidence 589999999999999999999999999999999999999998 78999999999999 99999999986 6999999
Q ss_pred ecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008619 95 SNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 95 Sa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
|+..+.....++++.||++||.||++.++|..+++.+++
T Consensus 80 t~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l~ 118 (120)
T 3f6p_A 80 TAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLR 118 (120)
T ss_dssp EESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHT
T ss_pred ECCCChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999988764
No 6
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=99.83 E-value=1.4e-19 Score=175.97 Aligned_cols=144 Identities=19% Similarity=0.293 Sum_probs=126.8
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCc
Q 008619 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLP 90 (559)
Q Consensus 15 p~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diP 90 (559)
+.+++|||||||+..+..|..+|+..||+|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ ++|
T Consensus 21 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvllD~~lp~-~~g~~~~~~lr~~~~~~~ 97 (250)
T 3r0j_A 21 TPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARE--TRPDAVILDVXMPG-MDGFGVLRRLRADGIDAP 97 (250)
T ss_dssp CSSCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--HCCSEEEEESCCSS-SCHHHHHHHHHHTTCCCC
T ss_pred CCCceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCCC
Confidence 346899999999999999999999999999999999999999998 78999999999999 99999999986 699
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHhcCC---CC--------------------ccCCC
Q 008619 91 TIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGG---SA--------------------LSDSL 147 (559)
Q Consensus 91 VImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~~~~~---~~--------------------~s~~L 147 (559)
||++|+..+.+.+.+++++||++||.||++.++|..+|+.++++...... .. ....|
T Consensus 98 ii~lt~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 177 (250)
T 3r0j_A 98 ALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQPVSL 177 (250)
T ss_dssp EEEEECSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHHHHHHCC------CCEEEETTEEEETTTCCEEETTEEECC
T ss_pred EEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhhccccccccceEEEECCEEEeccccEEEECCEEEec
Confidence 99999999999999999999999999999999999999999986432110 00 01259
Q ss_pred cHHHHHHHHHHhhh
Q 008619 148 KPVKESVVSMLHLK 161 (559)
Q Consensus 148 t~re~eVl~li~~~ 161 (559)
+++|.+++.++...
T Consensus 178 T~rE~~iL~~l~~~ 191 (250)
T 3r0j_A 178 SPTEFTLLRYFVIN 191 (250)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHC
Confidence 99999999998665
No 7
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=99.82 E-value=2.2e-22 Score=181.10 Aligned_cols=110 Identities=21% Similarity=0.315 Sum_probs=100.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC--CCcEEE
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTII 93 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir--diPVIm 93 (559)
.+|||||||++.++..++.+|+..||+|+ ++.++++|++.+++ ..||+||+|++||+ ++|+++++.++ ++|||+
T Consensus 8 ~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~--~~~DlvllDi~mP~-~~G~el~~~lr~~~ipvI~ 84 (123)
T 2lpm_A 8 RLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIARK--GQFDIAIIDVNLDG-EPSYPVADILAERNVPFIF 84 (123)
T ss_dssp CCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHHH--CCSSEEEECSSSSS-CCSHHHHHHHHHTCCSSCC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHh--CCCCEEEEecCCCC-CCHHHHHHHHHcCCCCEEE
Confidence 58999999999999999999999999987 78999999999999 78999999999999 99999999996 899999
Q ss_pred EecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 008619 94 TSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVV 132 (559)
Q Consensus 94 LSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vl 132 (559)
+|++++... +.++|+++||.|||+.++|..++++++
T Consensus 85 lTa~~~~~~---~~~~g~~~yl~KP~~~~~L~~~l~~~~ 120 (123)
T 2lpm_A 85 ATGYGSKGL---DTRYSNIPLLTKPFLDSELEAVLVQIS 120 (123)
T ss_dssp BCTTCTTSC---CSSSCSCSCBCSSSSHHHHHHHHSTTC
T ss_pred EecCccHHH---HHhCCCCcEEECCCCHHHHHHHHHHHH
Confidence 999887654 346899999999999999999887654
No 8
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=99.82 E-value=5.3e-20 Score=171.04 Aligned_cols=119 Identities=21% Similarity=0.290 Sum_probs=110.9
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCc
Q 008619 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLP 90 (559)
Q Consensus 15 p~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diP 90 (559)
+.+++|||||||+..+..|..+|+..||.|.+|.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ ++|
T Consensus 5 m~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvl~D~~lp~-~~g~~~~~~l~~~~~~~~ 81 (184)
T 3rqi_A 5 MSDKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGA--EKFEFITVXLHLGN-DSGLSLIAPLCDLQPDAR 81 (184)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHTT--SCCSEEEECSEETT-EESHHHHHHHHHHCTTCE
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--CCCCEEEEeccCCC-ccHHHHHHHHHhcCCCCC
Confidence 346799999999999999999999999999999999999999988 78999999999999 99999999986 699
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008619 91 TIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 136 (559)
Q Consensus 91 VImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~ 136 (559)
||++|+..+.+.+.++++.||++||.||++.++|..+|+.++++..
T Consensus 82 ii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~~~~~ 127 (184)
T 3rqi_A 82 ILVLTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNASEVQ 127 (184)
T ss_dssp EEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTTHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999988876543
No 9
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=99.82 E-value=3.4e-19 Score=155.56 Aligned_cols=117 Identities=21% Similarity=0.296 Sum_probs=110.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcEE
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTI 92 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPVI 92 (559)
+++||||||++..+..++.+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ ++|||
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvl~D~~l~~-~~g~~~~~~l~~~~~~~~ii 79 (132)
T 3crn_A 3 LKRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIEN--EFFNLALFXIKLPD-MEGTELLEKAHKLRPGMKKI 79 (132)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--SCCSEEEECSBCSS-SBHHHHHHHHHHHCTTSEEE
T ss_pred ccEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhc--CCCCEEEEecCCCC-CchHHHHHHHHhhCCCCcEE
Confidence 5799999999999999999999999999999999999999998 78999999999999 99999999885 69999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008619 93 ITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 136 (559)
Q Consensus 93 mLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~ 136 (559)
++|+..+.+...++++.||++||.||++.++|..+++.++++..
T Consensus 80 ~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 123 (132)
T 3crn_A 80 MVTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLDEQE 123 (132)
T ss_dssp EEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEeccccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999887643
No 10
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=99.81 E-value=6.3e-19 Score=154.88 Aligned_cols=121 Identities=22% Similarity=0.337 Sum_probs=112.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcE
Q 008619 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPT 91 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPV 91 (559)
.+++|||||||+..+..|+.+|...||.|..+.++.+|++.+.+....||+||+|+.|++ ++|+++++.++ ++||
T Consensus 2 ~~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~~i 80 (143)
T 3jte_A 2 SLAKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPK-LSGMDILREIKKITPHMAV 80 (143)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSS-SCHHHHHHHHHHHCTTCEE
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCC-CcHHHHHHHHHHhCCCCeE
Confidence 468999999999999999999999999999999999999999842268999999999999 99999999886 6999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHh
Q 008619 92 IITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFN 137 (559)
Q Consensus 92 ImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~~ 137 (559)
|++|+..+.+...++++.||++||.||++.++|..+|+.++++...
T Consensus 81 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~~ 126 (143)
T 3jte_A 81 IILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINRKKL 126 (143)
T ss_dssp EEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987544
No 11
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=99.81 E-value=6.1e-19 Score=152.06 Aligned_cols=114 Identities=16% Similarity=0.307 Sum_probs=107.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcEE
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTI 92 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPVI 92 (559)
..+||||||++..+..+..+|...||.|..+.++.++++.+.. ..||+||+|+.||+ ++|+++++.++ .+|||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~~~ii 79 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPD--VRNGVLVTDLRMPD-MSGVELLRNLGDLKINIPSI 79 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGG--CCSEEEEEECCSTT-SCHHHHHHHHHHTTCCCCEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhc--CCCCEEEEECCCCC-CCHHHHHHHHHhcCCCCCEE
Confidence 4799999999999999999999999999999999999999988 78999999999999 99999999885 68999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008619 93 ITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 93 mLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
++|+..+.+...++++.||++||.||++.++|..+++.+++
T Consensus 80 ~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 120 (126)
T 1dbw_A 80 VITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASE 120 (126)
T ss_dssp EEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHT
T ss_pred EEECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888764
No 12
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=99.81 E-value=2.8e-19 Score=159.05 Aligned_cols=117 Identities=21% Similarity=0.322 Sum_probs=104.9
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-------
Q 008619 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------- 87 (559)
Q Consensus 15 p~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir------- 87 (559)
..+++||||||++..+..|+.+|+..||.|..+.++++|++.+.. ..||+||+|+.||+ ++|+++++.++
T Consensus 12 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvl~D~~mp~-~~g~~~~~~lr~~~~~~~ 88 (143)
T 3m6m_D 12 VRSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAE--EDYDAVIVDLHMPG-MNGLDMLKQLRVMQASGM 88 (143)
T ss_dssp ---CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHHH--SCCSEEEEESCCSS-SCHHHHHHHHHHHHHTTC
T ss_pred cccceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCC-CCHHHHHHHHHhchhccC
Confidence 346899999999999999999999999999999999999999988 78999999999999 99999999885
Q ss_pred -CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008619 88 -DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 88 -diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
.+|||++|+..+.+.+.++++.||++||.||++.++|..+++.+...
T Consensus 89 ~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 136 (143)
T 3m6m_D 89 RYTPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAVS 136 (143)
T ss_dssp CCCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC--
T ss_pred CCCeEEEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHHHh
Confidence 48999999999999999999999999999999999999998887644
No 13
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=99.81 E-value=9.8e-20 Score=170.81 Aligned_cols=146 Identities=18% Similarity=0.253 Sum_probs=124.9
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCc
Q 008619 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLP 90 (559)
Q Consensus 15 p~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diP 90 (559)
+...+|||||||+..+..|..+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ ++|
T Consensus 2 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvl~D~~lp~-~~g~~~~~~l~~~~~~~~ 78 (208)
T 1yio_A 2 TAKPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRP--EQHGCLVLDMRMPG-MSGIELQEQLTAISDGIP 78 (208)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCCT--TSCEEEEEESCCSS-SCHHHHHHHHHHTTCCCC
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhhhc--cCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCCC
Confidence 345799999999999999999999999999999999999999988 78999999999999 99999999985 699
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHhcCC--------CCccCCCcHHHHHHHHHHhhhh
Q 008619 91 TIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGG--------SALSDSLKPVKESVVSMLHLKL 162 (559)
Q Consensus 91 VImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~~~~~--------~~~s~~Lt~re~eVl~li~~~~ 162 (559)
||++|+..+.+.+.++++.||++||.||++.++|..+++.++++...... ......|+++|.+++.++..+.
T Consensus 79 ii~ls~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~~vl~~l~~g~ 158 (208)
T 1yio_A 79 IVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLNAERRQARETQDQLEQLFSSLTGREQQVLQLTIRGL 158 (208)
T ss_dssp EEEEESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHTTTC
T ss_pred EEEEeCCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCC
Confidence 99999999988899999999999999999999999999998875322110 0012357888888888776554
Q ss_pred c
Q 008619 163 E 163 (559)
Q Consensus 163 ~ 163 (559)
.
T Consensus 159 s 159 (208)
T 1yio_A 159 M 159 (208)
T ss_dssp C
T ss_pred c
Confidence 3
No 14
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=99.81 E-value=4.2e-19 Score=159.55 Aligned_cols=117 Identities=19% Similarity=0.273 Sum_probs=110.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC------CCc
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DLP 90 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir------diP 90 (559)
+++||||||++..+..|..+|+..||.|..+.++.+|++.+.+ ..||+||+|+.||+ ++|+++++.++ ++|
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--~~~dlii~D~~l~~-~~g~~~~~~lr~~~~~~~~p 83 (154)
T 3gt7_A 7 AGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSL--TRPDLIISDVLMPE-MDGYALCRWLKGQPDLRTIP 83 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTT--CCCSEEEEESCCSS-SCHHHHHHHHHHSTTTTTSC
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh--CCCCEEEEeCCCCC-CCHHHHHHHHHhCCCcCCCC
Confidence 4799999999999999999999999999999999999999988 78999999999999 99999999885 589
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008619 91 TIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 136 (559)
Q Consensus 91 VImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~ 136 (559)
||++|+..+.+.+.++++.||++||.||++.++|..+|+.++++..
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~ 129 (154)
T 3gt7_A 84 VILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGVK 129 (154)
T ss_dssp EEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHTC
T ss_pred EEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987643
No 15
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=99.81 E-value=7.1e-19 Score=149.61 Aligned_cols=114 Identities=16% Similarity=0.322 Sum_probs=108.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcEEE
Q 008619 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTII 93 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPVIm 93 (559)
++||||||++..+..+..+|...||.|..+.++.+|+..+.. ..||+||+|+.||+ ++|+++++.++ .+|||+
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~--~~~dlil~D~~l~~-~~g~~~~~~l~~~~~~~~ii~ 77 (121)
T 2pl1_A 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNE--HIPDIAIVDLGLPD-EDGLSLIRRWRSNDVSLPILV 77 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--SCCSEEEECSCCSS-SCHHHHHHHHHHTTCCSCEEE
T ss_pred CeEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHhc--cCCCEEEEecCCCC-CCHHHHHHHHHhcCCCCCEEE
Confidence 589999999999999999999999999999999999999998 78999999999999 99999999885 699999
Q ss_pred EecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008619 94 TSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 94 LSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
+|+..+.....++++.||++||.||++.++|..+++.++++
T Consensus 78 ~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 118 (121)
T 2pl1_A 78 LTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 (121)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHHcCccceEECCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988765
No 16
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=99.81 E-value=3.8e-19 Score=154.63 Aligned_cols=115 Identities=16% Similarity=0.305 Sum_probs=105.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCE-EEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC------CC
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAMDYI-VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DL 89 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~-V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir------di 89 (559)
+++||||||++..+..++.+|+..||. |..+.++.+|+..+... ..||+||+|+.||+ ++|+++++.++ ++
T Consensus 5 ~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~-~~~dlvi~D~~~p~-~~g~~~~~~lr~~~~~~~~ 82 (129)
T 3h1g_A 5 SMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDAN-ADTKVLITDWNMPE-MNGLDLVKKVRSDSRFKEI 82 (129)
T ss_dssp -CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHC-TTCCEEEECSCCSS-SCHHHHHHHHHTSTTCTTC
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhC-CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCCCC
Confidence 579999999999999999999999995 88999999999998762 36999999999999 99999999885 58
Q ss_pred cEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008619 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 90 PVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
|||++|+..+...+.++++.||++||.||++.++|..+++.+++
T Consensus 83 pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~ 126 (129)
T 3h1g_A 83 PIIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLG 126 (129)
T ss_dssp CEEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHC
T ss_pred eEEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999988764
No 17
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=99.81 E-value=6.8e-19 Score=157.37 Aligned_cols=122 Identities=16% Similarity=0.235 Sum_probs=114.1
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----C
Q 008619 13 DFPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----D 88 (559)
Q Consensus 13 ~~p~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----d 88 (559)
.+..+++|||||||+..+..|..+|...||.|..+.++.+|++.+.+ ..|||||+|+.|++ ++|+++++.++ +
T Consensus 10 ~~~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~ 86 (153)
T 3hv2_A 10 TVTRRPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLAS--REVDLVISAAHLPQ-MDGPTLLARIHQQYPS 86 (153)
T ss_dssp CCCSCCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHH--SCCSEEEEESCCSS-SCHHHHHHHHHHHCTT
T ss_pred hccCCceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHc--CCCCEEEEeCCCCc-CcHHHHHHHHHhHCCC
Confidence 34556899999999999999999999999999999999999999998 78999999999999 99999999986 7
Q ss_pred CcEEEEecCCCHHHHHHHHHcC-CCEEEeCCCCHHHHHHHHHHHHHHHHh
Q 008619 89 LPTIITSNIHCLSTMMKCIALG-AVEFLRKPLSEDKLRNLWQHVVHKAFN 137 (559)
Q Consensus 89 iPVImLSa~~d~e~v~kAi~~G-A~DYLvKPis~eeL~~iIq~vlrr~~~ 137 (559)
+|||++|+..+.+.+.++++.| |++||.||++.++|..+|+.++++...
T Consensus 87 ~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~~~~~ 136 (153)
T 3hv2_A 87 TTRILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALEHQHS 136 (153)
T ss_dssp SEEEEECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHHHhHH
Confidence 9999999999999999999999 999999999999999999999977543
No 18
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=99.80 E-value=6.2e-19 Score=166.95 Aligned_cols=142 Identities=16% Similarity=0.321 Sum_probs=126.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcEE
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTI 92 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPVI 92 (559)
+++|||||||+..+..|..+|...||.|..+.++.+|+..+.. ..||+||+|+.||+ ++|+++++.++ ++|||
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~--~~~dlvllD~~l~~-~~g~~~~~~lr~~~~~~~ii 78 (225)
T 1kgs_A 2 NVRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALN--EPFDVVILDIMLPV-HDGWEILKSMRESGVNTPVL 78 (225)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--SCCSEEEEESCCSS-SCHHHHHHHHHHTTCCCCEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCCCEE
Confidence 5799999999999999999999999999999999999999998 78999999999999 99999999885 79999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHhcCCCC-------------------ccCCCcHHHHH
Q 008619 93 ITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGGSA-------------------LSDSLKPVKES 153 (559)
Q Consensus 93 mLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~~~~~~~-------------------~s~~Lt~re~e 153 (559)
++|+..+.+.+.++++.||++||.||++.++|..+++.++++........ ....|+++|.+
T Consensus 79 ~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~~ 158 (225)
T 1kgs_A 79 MLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKSESKSTKLVCGDLILDTATKKAYRGSKEIDLTKKEYQ 158 (225)
T ss_dssp EEESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHHHCCSCSSEEEETTEEEETTTTEEEETTEEECCCHHHHH
T ss_pred EEeCCCCHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHhhcccccCceEEECCEEEecccCEEEECCEEEecCHHHHH
Confidence 99999999999999999999999999999999999999998753221110 01258999999
Q ss_pred HHHHHhhh
Q 008619 154 VVSMLHLK 161 (559)
Q Consensus 154 Vl~li~~~ 161 (559)
++.++..+
T Consensus 159 vL~~l~~~ 166 (225)
T 1kgs_A 159 ILEYLVMN 166 (225)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhC
Confidence 99988776
No 19
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=99.80 E-value=8.3e-19 Score=148.63 Aligned_cols=114 Identities=21% Similarity=0.393 Sum_probs=107.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC---CCcEEEE
Q 008619 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTIIT 94 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir---diPVImL 94 (559)
.+||||||++..+..++..|...||+|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ .+|||++
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~--~~~dlvl~D~~l~~-~~g~~~~~~l~~~~~~~ii~~ 78 (120)
T 2a9o_A 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEA--EQPDIIILDLMLPE-IDGLEVAKTIRKTSSVPILML 78 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--HCCSEEEECSSCSS-SCHHHHHHHHHHHCCCCEEEE
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHHh--CCCCEEEEeccCCC-CCHHHHHHHHHhCCCCCEEEE
Confidence 589999999999999999999999999999999999999988 67999999999999 99999999886 7999999
Q ss_pred ecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008619 95 SNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 95 Sa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
|+..+......+++.||++||.||++.++|..+++.++++
T Consensus 79 s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 118 (120)
T 2a9o_A 79 SAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118 (120)
T ss_dssp ESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHC
T ss_pred ecCCchHHHHHHHhCCHhheEeCCCCHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999887753
No 20
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=99.80 E-value=7.9e-19 Score=154.59 Aligned_cols=118 Identities=18% Similarity=0.319 Sum_probs=110.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC---CCcEE
Q 008619 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTI 92 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir---diPVI 92 (559)
..++||||||++..+..|..+|...||.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ .+|||
T Consensus 3 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvllD~~l~~-~~g~~l~~~l~~~~~~~ii 79 (136)
T 2qzj_A 3 LQTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFS--NKYDLIFLEIILSD-GDGWTLCKKIRNVTTCPIV 79 (136)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH--CCCSEEEEESEETT-EEHHHHHHHHHTTCCCCEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh--cCCCEEEEeCCCCC-CCHHHHHHHHccCCCCCEE
Confidence 35799999999999999999999999999999999999999998 78999999999999 99999999986 68999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008619 93 ITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 136 (559)
Q Consensus 93 mLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~ 136 (559)
++|+..+.+.+.++++.||++||.||++.++|..+++.++++..
T Consensus 80 ~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~~ 123 (136)
T 2qzj_A 80 YMTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILRRMN 123 (136)
T ss_dssp EEESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999887643
No 21
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=99.80 E-value=4.3e-19 Score=152.27 Aligned_cols=114 Identities=18% Similarity=0.284 Sum_probs=107.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcEE
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTI 92 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPVI 92 (559)
..+||||||++..+..++.+|+..||.|..+.++.+|+..+.. ..||+||+|+.||+ ++|+++++.++ ++|||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~--~~~dlvl~D~~l~~-~~g~~~~~~l~~~~~~~~ii 79 (124)
T 1srr_A 3 NEKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTK--ERPDLVLLDMKIPG-MDGIEILKRMKVIDENIRVI 79 (124)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH--HCCSEEEEESCCTT-CCHHHHHHHHHHHCTTCEEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhc--cCCCEEEEecCCCC-CCHHHHHHHHHHhCCCCCEE
Confidence 3699999999999999999999999999999999999999988 67999999999999 99999999885 69999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008619 93 ITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 93 mLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
++|+..+.+...++++.||++||.||++.++|..+++.+++
T Consensus 80 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1srr_A 80 IMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLP 120 (124)
T ss_dssp EEESSCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHSC
T ss_pred EEEccCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999887653
No 22
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=99.80 E-value=1.4e-18 Score=148.53 Aligned_cols=116 Identities=13% Similarity=0.246 Sum_probs=108.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC---CCcEEE
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTII 93 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir---diPVIm 93 (559)
..+||||||++..+..++.+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ .+|||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~--~~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~~ii~ 79 (123)
T 1xhf_A 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE--YDINLVIMDINLPG-KNGLLLARELREQANVALMF 79 (123)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH--SCCSEEEECSSCSS-SCHHHHHHHHHHHCCCEEEE
T ss_pred CceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHhc--CCCCEEEEcCCCCC-CCHHHHHHHHHhCCCCcEEE
Confidence 4589999999999999999999999999999999999999998 78999999999999 99999999885 799999
Q ss_pred EecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008619 94 TSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (559)
Q Consensus 94 LSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~ 135 (559)
+|+..+.....++++.||++||.||++.++|..+++.++++.
T Consensus 80 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 121 (123)
T 1xhf_A 80 LTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 (123)
T ss_dssp EESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EECCCChHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999887653
No 23
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=99.80 E-value=1.7e-18 Score=147.76 Aligned_cols=114 Identities=11% Similarity=0.240 Sum_probs=108.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC---CCcEEEE
Q 008619 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTIIT 94 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir---diPVImL 94 (559)
.+||||||++..+..+..+|+..||.|..+.++.++++.+.. ..||+||+|+.||+ ++|+++++.++ .+|||++
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~ii~~ 79 (122)
T 1zgz_A 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQN--QSVDLILLDINLPD-ENGLMLTRALRERSTVGIILV 79 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--SCCSEEEEESCCSS-SCHHHHHHHHHTTCCCEEEEE
T ss_pred cEEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHhc--CCCCEEEEeCCCCC-CChHHHHHHHHhcCCCCEEEE
Confidence 589999999999999999999999999999999999999988 67999999999999 99999999885 6999999
Q ss_pred ecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008619 95 SNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 95 Sa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
|+..+.+...++++.||++||.||++.++|..+++.++++
T Consensus 80 s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 119 (122)
T 1zgz_A 80 TGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 (122)
T ss_dssp ESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred ECCCChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988865
No 24
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=99.80 E-value=3.8e-19 Score=155.76 Aligned_cols=120 Identities=16% Similarity=0.259 Sum_probs=110.3
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC------C
Q 008619 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------D 88 (559)
Q Consensus 15 p~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir------d 88 (559)
+.+++|||||||+..+..|..+|+..||.|..+.++.+|++.+.+ ..||+||+|+.||+ ++|+++++.++ +
T Consensus 4 ~~~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~--~~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~~ 80 (140)
T 3grc_A 4 APRPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVAR--RPYAAMTVDLNLPD-QDGVSLIRALRRDSRTRD 80 (140)
T ss_dssp -CCSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHH--SCCSEEEECSCCSS-SCHHHHHHHHHTSGGGTT
T ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHh--CCCCEEEEeCCCCC-CCHHHHHHHHHhCcccCC
Confidence 345799999999999999999999999999999999999999999 78999999999999 99999999885 6
Q ss_pred CcEEEEecCCCHHHHH-HHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHh
Q 008619 89 LPTIITSNIHCLSTMM-KCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFN 137 (559)
Q Consensus 89 iPVImLSa~~d~e~v~-kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~~ 137 (559)
+|||++|+..+..... .+++.||++||.||++.++|..+|+.++++...
T Consensus 81 ~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~~~~ 130 (140)
T 3grc_A 81 LAIVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDNMAE 130 (140)
T ss_dssp CEEEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHHHC-
T ss_pred CCEEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHhcCC
Confidence 8999999998877777 899999999999999999999999999987654
No 25
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=99.80 E-value=8.6e-19 Score=165.51 Aligned_cols=147 Identities=12% Similarity=0.183 Sum_probs=125.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhC-CCEE-EEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CC
Q 008619 16 KGLRVLLLDQDSSAAAELKFKLEAM-DYIV-STFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DL 89 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~-gy~V-~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----di 89 (559)
.+++|||||||+..+..+..+|+.. +|.| ..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ .+
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~~~--~~~dlvllD~~lp~-~~g~~~~~~lr~~~~~~ 80 (215)
T 1a04_A 4 EPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAES--LDPDLILLDLNMPG-MNGLETLDKLREKSLSG 80 (215)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHH--HCCSEEEEETTSTT-SCHHHHHHHHHHSCCCS
T ss_pred CceEEEEECCCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCC-CcHHHHHHHHHHhCCCC
Confidence 3579999999999999999999987 5888 589999999999988 67999999999999 99999999986 68
Q ss_pred cEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHhcCC-----------------CCccCCCcHHHH
Q 008619 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGG-----------------SALSDSLKPVKE 152 (559)
Q Consensus 90 PVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~~~~~-----------------~~~s~~Lt~re~ 152 (559)
|||++|+..+.+.+.++++.||++||.||++.++|..+++.++++...... ......|+++|.
T Consensus 81 ~ii~ls~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~ 160 (215)
T 1a04_A 81 RIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGEMVLSEALTPVLAASLRANRATTERDVNQLTPRER 160 (215)
T ss_dssp EEEEEECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHSCCCCCTTTHHHHHHHC-------CCCGGGSCHHHH
T ss_pred cEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHcCCeecCHHHHHHHHHHhcccccCCCccccCCCHHHH
Confidence 999999999999999999999999999999999999999998865211000 111235889999
Q ss_pred HHHHHHhhhhccc
Q 008619 153 SVVSMLHLKLENG 165 (559)
Q Consensus 153 eVl~li~~~~~~~ 165 (559)
+++.++..+..+.
T Consensus 161 ~vl~~l~~g~s~~ 173 (215)
T 1a04_A 161 DILKLIAQGLPNK 173 (215)
T ss_dssp HHHHHHHTTCCHH
T ss_pred HHHHHHHcCCCHH
Confidence 9999888766443
No 26
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=99.80 E-value=2.5e-19 Score=175.48 Aligned_cols=143 Identities=16% Similarity=0.274 Sum_probs=125.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC---CCcEE
Q 008619 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTI 92 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir---diPVI 92 (559)
.+++|||||||+..+..|..+|+..||.|..+.++.+|+..+.. ..|||||+|+.||+ ++|+++++.++ .+|||
T Consensus 36 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~DlvllD~~lp~-~~G~~l~~~lr~~~~~~iI 112 (249)
T 3q9s_A 36 NEQRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKARE--DHPDLILLDLGLPD-FDGGDVVQRLRKNSALPII 112 (249)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH--SCCSEEEEECCSCH-HHHHHHHHHHHTTCCCCEE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc--CCCCEEEEcCCCCC-CCHHHHHHHHHcCCCCCEE
Confidence 34799999999999999999999999999999999999999998 78999999999999 99999999986 69999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHhcCC---------C-------CccCCCcHHHHHHHH
Q 008619 93 ITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGG---------S-------ALSDSLKPVKESVVS 156 (559)
Q Consensus 93 mLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~~~~~---------~-------~~s~~Lt~re~eVl~ 156 (559)
++|+..+.+.+.+++++||++||.||++.++|..+|+.++++...... . .....|+++|.+++.
T Consensus 113 ~lt~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~rE~evL~ 192 (249)
T 3q9s_A 113 VLTARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQRTSESLSMGDLTLDPQKRLVTYKGEELRLSPKEFDILA 192 (249)
T ss_dssp EEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHCCCCSCCEEETTEEEETTTTEEEETTEEECCCHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhhcccCceeECCEEEecccCEEEECCEEeecCHHHHHHHH
Confidence 999999999999999999999999999999999999998875321100 0 001249999999999
Q ss_pred HHhhh
Q 008619 157 MLHLK 161 (559)
Q Consensus 157 li~~~ 161 (559)
++..+
T Consensus 193 ll~~g 197 (249)
T 3q9s_A 193 LLIRQ 197 (249)
T ss_dssp HHHHS
T ss_pred HHHHC
Confidence 99876
No 27
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=99.80 E-value=1.4e-18 Score=154.93 Aligned_cols=120 Identities=13% Similarity=0.267 Sum_probs=107.6
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCC--EEEEECCHHHHHHHhhc-------CCCCeeEEEEecCCCCCCCHHHHHHH
Q 008619 15 PKGLRVLLLDQDSSAAAELKFKLEAMDY--IVSTFYNENEALSAFSD-------KPENFHVAIVEVTTSNTDGSFKFLET 85 (559)
Q Consensus 15 p~glrVLIVDDD~~~~~~L~~~L~~~gy--~V~ta~~~~eAL~~Lre-------~~~~pDLVIvDv~MPd~mdG~eLLe~ 85 (559)
.+.++|||||||+..+..|+.+|+..|| .|..+.++.+|++.++. ....||+||+|+.||+ ++|+++++.
T Consensus 2 ~~~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~-~~g~~~~~~ 80 (152)
T 3heb_A 2 SLSVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPD-MTGIDILKL 80 (152)
T ss_dssp ---CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSS-SBHHHHHHH
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCC-CcHHHHHHH
Confidence 3468999999999999999999999998 89999999999999961 1167999999999999 999999998
Q ss_pred cC------CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008619 86 AK------DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (559)
Q Consensus 86 Ir------diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~ 135 (559)
++ ++|||++|+..+.+.+.++++.||++||.||++.++|..+|+++.+..
T Consensus 81 lr~~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 136 (152)
T 3heb_A 81 VKENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGLFF 136 (152)
T ss_dssp HHHSTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred HHhcccccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHHHH
Confidence 85 589999999999999999999999999999999999999999986543
No 28
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=99.80 E-value=7.2e-19 Score=152.06 Aligned_cols=117 Identities=16% Similarity=0.285 Sum_probs=102.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcE
Q 008619 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPT 91 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPV 91 (559)
.+++||||||++..+..+..+|+..||.|..+.++.+|++.+.+ ..||+||+|+.|++ ++|+++++.++ .+||
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~~i 82 (130)
T 3eod_A 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGG--FTPDLMICDIAMPR-MNGLKLLEHIRNRGDQTPV 82 (130)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTT--CCCSEEEECCC------CHHHHHHHHHTTCCCCE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhc--CCCCEEEEecCCCC-CCHHHHHHHHHhcCCCCCE
Confidence 35799999999999999999999999999999999999999988 78999999999999 99999999986 6999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHHH
Q 008619 92 IITSNIHCLSTMMKCIALGAVEFLRKPL-SEDKLRNLWQHVVHKA 135 (559)
Q Consensus 92 ImLSa~~d~e~v~kAi~~GA~DYLvKPi-s~eeL~~iIq~vlrr~ 135 (559)
|++|+..+.+...++++.||++||.||+ +.++|..+++.++++.
T Consensus 83 i~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~~ 127 (130)
T 3eod_A 83 LVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 (130)
T ss_dssp EEEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC--
T ss_pred EEEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhchh
Confidence 9999999999999999999999999999 8999999999888654
No 29
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=99.80 E-value=7.9e-19 Score=154.02 Aligned_cols=116 Identities=16% Similarity=0.311 Sum_probs=104.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCE-EEEECCHHHHHHHhhc---CCCCeeEEEEecCCCCCCCHHHHHHHcC-----
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAMDYI-VSTFYNENEALSAFSD---KPENFHVAIVEVTTSNTDGSFKFLETAK----- 87 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~-V~ta~~~~eAL~~Lre---~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----- 87 (559)
.++||||||++..+..++.+|+..||. |..+.++.+|++.+.. ....||+||+|+.||+ ++|+++++.++
T Consensus 2 ~~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~~~~~~dlvllD~~mp~-~~G~~~~~~lr~~~~~ 80 (133)
T 2r25_B 2 SVKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPK-VDGLLSTKMIRRDLGY 80 (133)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEECSCCSS-SCHHHHHHHHHHHSCC
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHhcCCCCCEEEEeCCCCC-CChHHHHHHHHhhcCC
Confidence 478999999999999999999988974 7799999999998875 1136999999999999 99999998885
Q ss_pred CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008619 88 DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 88 diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
.+|||++|+..+.+.+.++++.||++||.||++.++|..+++.++.
T Consensus 81 ~~~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~ 126 (133)
T 2r25_B 81 TSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCA 126 (133)
T ss_dssp CSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999999999887653
No 30
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=99.80 E-value=2.1e-18 Score=148.40 Aligned_cols=116 Identities=18% Similarity=0.314 Sum_probs=108.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCC-EEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC------C
Q 008619 16 KGLRVLLLDQDSSAAAELKFKLEAMDY-IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------D 88 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy-~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir------d 88 (559)
+.++||||||++..+..++.+|+..|| .|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ .
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~--~~~dlvi~D~~l~~-~~g~~l~~~l~~~~~~~~ 79 (128)
T 1jbe_A 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA--GGYGFVISDWNMPN-MDGLELLKTIRAXXAMSA 79 (128)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHTT--CCCCEEEEESCCSS-SCHHHHHHHHHC--CCTT
T ss_pred CccEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHh--cCCCEEEEeCCCCC-CCHHHHHHHHHhhcccCC
Confidence 357899999999999999999999999 68899999999999988 67999999999999 99999999885 5
Q ss_pred CcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008619 89 LPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 89 iPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
+|||++|+..+.+.+.++++.||++||.||++.++|..+++.++++
T Consensus 80 ~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~ 125 (128)
T 1jbe_A 80 LPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125 (128)
T ss_dssp CCEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CcEEEEecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999988764
No 31
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=99.79 E-value=9.2e-19 Score=149.05 Aligned_cols=113 Identities=19% Similarity=0.306 Sum_probs=105.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEE-EEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcE
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAMDYIV-STFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPT 91 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V-~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPV 91 (559)
+++||||||++..+..++.+|+..||++ ..+.++.+|++.+.+ ..||+||+|+.||+ ++|+++++.++ .+||
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~--~~~dlil~D~~l~~-~~g~~~~~~l~~~~~~~~i 78 (120)
T 1tmy_A 2 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKE--LKPDIVTMDITMPE-MNGIDAIKEIMKIDPNAKI 78 (120)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH--HCCSEEEEECSCGG-GCHHHHHHHHHHHCTTCCE
T ss_pred CceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHh--cCCCEEEEeCCCCC-CcHHHHHHHHHhhCCCCeE
Confidence 4699999999999999999999999994 589999999999988 67999999999999 99999999885 6999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 008619 92 IITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVV 132 (559)
Q Consensus 92 ImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vl 132 (559)
|++|+..+.+...++++.||++||.||++.++|..+++.++
T Consensus 79 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 79 IVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKVS 119 (120)
T ss_dssp EEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred EEEeCCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999987754
No 32
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=99.79 E-value=1.6e-18 Score=152.75 Aligned_cols=120 Identities=15% Similarity=0.256 Sum_probs=111.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCE--EEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC------
Q 008619 16 KGLRVLLLDQDSSAAAELKFKLEAMDYI--VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------ 87 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy~--V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir------ 87 (559)
.+++|||||||+..+..|+.+|+..||. |..+.++.+|++.+.. ..||+||+|+.|++ ++|+++++.++
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~--~~~dlii~D~~l~~-~~g~~~~~~lr~~~~~~ 80 (144)
T 3kht_A 4 RSKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQ--AKYDLIILDIGLPI-ANGFEVMSAVRKPGANQ 80 (144)
T ss_dssp -CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTT--CCCSEEEECTTCGG-GCHHHHHHHHHSSSTTT
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhc--CCCCEEEEeCCCCC-CCHHHHHHHHHhccccc
Confidence 4579999999999999999999999887 8899999999999998 78999999999999 99999999885
Q ss_pred CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHHHHhc
Q 008619 88 DLPTIITSNIHCLSTMMKCIALGAVEFLRKPL-SEDKLRNLWQHVVHKAFNA 138 (559)
Q Consensus 88 diPVImLSa~~d~e~v~kAi~~GA~DYLvKPi-s~eeL~~iIq~vlrr~~~~ 138 (559)
.+|||++|+..+.+.+.++++.||++||.||+ +.++|..+|+.++++....
T Consensus 81 ~~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~~~~~~ 132 (144)
T 3kht_A 81 HTPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFSYWLTV 132 (144)
T ss_dssp TCCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHHHHHhc
Confidence 58999999999999999999999999999999 9999999999999886654
No 33
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=99.79 E-value=9.6e-19 Score=151.53 Aligned_cols=119 Identities=14% Similarity=0.145 Sum_probs=103.2
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC------
Q 008619 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------ 87 (559)
Q Consensus 14 ~p~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir------ 87 (559)
|+..++|||||||+..+..++.+|+ .||.|..+.++.+|++.+.+ ..||+||+|+.|++ ++|+++++.++
T Consensus 1 M~~~~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~--~~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~ 76 (133)
T 3nhm_A 1 MSLKPKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALA--HPPDVLISDVNMDG-MDGYALCGHFRSEPTLK 76 (133)
T ss_dssp ----CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHH--SCCSEEEECSSCSS-SCHHHHHHHHHHSTTTT
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCC-CCHHHHHHHHHhCCccC
Confidence 3456899999999999999999999 89999999999999999998 78999999999999 99999999885
Q ss_pred CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHh
Q 008619 88 DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFN 137 (559)
Q Consensus 88 diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~~ 137 (559)
++|||++|+..+.+. ..+++.||++||.||++.++|..+++.++++...
T Consensus 77 ~~pii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~ 125 (133)
T 3nhm_A 77 HIPVIFVSGYAPRTE-GPADQPVPDAYLVKPVKPPVLIAQLHALLARAEA 125 (133)
T ss_dssp TCCEEEEESCCC------TTSCCCSEEEESSCCHHHHHHHHHHHHHHHC-
T ss_pred CCCEEEEeCCCcHhH-HHHhhcCCceEEeccCCHHHHHHHHHHHHhhhcc
Confidence 689999999988777 8999999999999999999999999999987543
No 34
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=99.79 E-value=6.6e-19 Score=154.46 Aligned_cols=120 Identities=23% Similarity=0.332 Sum_probs=110.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCC-CCHHHHHHHcC----CCc
Q 008619 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNT-DGSFKFLETAK----DLP 90 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~-mdG~eLLe~Ir----diP 90 (559)
.+++|||||||+..+..|+.+|+..||+|.++.++.+|++.+.+ ..||+||+|+.||+. ++|+++++.++ ++|
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~~ 82 (136)
T 3kto_A 5 HHPIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQIS--DDAIGMIIEAHLEDKKDSGIELLETLVKRGFHLP 82 (136)
T ss_dssp --CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCCC--TTEEEEEEETTGGGBTTHHHHHHHHHHHTTCCCC
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhc--cCCCEEEEeCcCCCCCccHHHHHHHHHhCCCCCC
Confidence 45799999999999999999999999999999999999999988 789999999999973 58999999886 699
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHh
Q 008619 91 TIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFN 137 (559)
Q Consensus 91 VImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~~ 137 (559)
||++|+..+.+.+.++++.||++||.||++.++|..+|++++.+...
T Consensus 83 ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~~~ 129 (136)
T 3kto_A 83 TIVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIINGAKE 129 (136)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHHHC-
T ss_pred EEEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999877543
No 35
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.79 E-value=1.2e-18 Score=153.56 Aligned_cols=116 Identities=20% Similarity=0.259 Sum_probs=109.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcEEE
Q 008619 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTII 93 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPVIm 93 (559)
.+||||||++..+..++.+|...||.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ .+|||+
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvllD~~l~~-~~g~~l~~~l~~~~~~~~ii~ 81 (137)
T 3cfy_A 5 PRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIER--SKPQLIILDLKLPD-MSGEDVLDWINQNDIPTSVII 81 (137)
T ss_dssp CEEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHH--HCCSEEEECSBCSS-SBHHHHHHHHHHTTCCCEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHHh--cCCCEEEEecCCCC-CCHHHHHHHHHhcCCCCCEEE
Confidence 489999999999999999999899999999999999999988 68999999999999 99999999885 689999
Q ss_pred EecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008619 94 TSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 136 (559)
Q Consensus 94 LSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~ 136 (559)
+|+..+.+...++++.||++||.||++.++|..+++.++++..
T Consensus 82 ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 124 (137)
T 3cfy_A 82 ATAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAK 124 (137)
T ss_dssp EESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEecCcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887643
No 36
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=99.79 E-value=8.7e-19 Score=152.88 Aligned_cols=119 Identities=21% Similarity=0.274 Sum_probs=112.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcEE
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTI 92 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPVI 92 (559)
+++|||||||+..+..|..+|...+|.|..+.++.+|++.+.+ ..||+||+|+.|++ ++|+++++.++ ++|||
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~--~~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~~ii 83 (137)
T 3hdg_A 7 ALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGL--HAPDVIITDIRMPK-LGGLEMLDRIKAGGAKPYVI 83 (137)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHH--HCCSEEEECSSCSS-SCHHHHHHHHHHTTCCCEEE
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhc--cCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCCcEE
Confidence 5799999999999999999999999999999999999999998 78999999999999 99999999986 69999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHhc
Q 008619 93 ITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNA 138 (559)
Q Consensus 93 mLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~~~ 138 (559)
++|+..+.+...++++.||++||.||++.++|..++++++++....
T Consensus 84 ~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~~ 129 (137)
T 3hdg_A 84 VISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHIKLAK 129 (137)
T ss_dssp ECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred EEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999876543
No 37
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=99.79 E-value=4e-19 Score=153.06 Aligned_cols=115 Identities=15% Similarity=0.194 Sum_probs=105.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC------CC
Q 008619 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DL 89 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir------di 89 (559)
.+++|||||||+..+..|..+|+..||+|..+.++.+|++.+.+ ..||+||+|+.||+ ++|+++++.++ .+
T Consensus 2 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlii~D~~l~~-~~g~~~~~~l~~~~~~~~~ 78 (127)
T 3i42_A 2 SLQQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMST--RGYDAVFIDLNLPD-TSGLALVKQLRALPMEKTS 78 (127)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHH--SCCSEEEEESBCSS-SBHHHHHHHHHHSCCSSCC
T ss_pred CcceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHh--cCCCEEEEeCCCCC-CCHHHHHHHHHhhhccCCC
Confidence 45799999999999999999999999999999999999999998 78999999999999 99999998875 58
Q ss_pred cEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008619 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 90 PVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
|||++|+..+.+. ..++..||++||.||++.++|..++++..+.
T Consensus 79 ~ii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 122 (127)
T 3i42_A 79 KFVAVSGFAKNDL-GKEACELFDFYLEKPIDIASLEPILQSIEGH 122 (127)
T ss_dssp EEEEEECC-CTTC-CHHHHHHCSEEEESSCCHHHHHHHHHHHC--
T ss_pred CEEEEECCcchhH-HHHHHHhhHHheeCCCCHHHHHHHHHHhhcc
Confidence 9999999988887 8899999999999999999999999887654
No 38
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=99.79 E-value=1.5e-18 Score=154.58 Aligned_cols=117 Identities=16% Similarity=0.204 Sum_probs=109.1
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCC--CEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----C
Q 008619 15 PKGLRVLLLDQDSSAAAELKFKLEAMD--YIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----D 88 (559)
Q Consensus 15 p~glrVLIVDDD~~~~~~L~~~L~~~g--y~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----d 88 (559)
..+++|||||||+..+..|..+|...+ |.|..+.++.+|++.+.+ ..|||||+|+.|++ ++|+++++.++ +
T Consensus 18 ~~m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~--~~~dlii~D~~l~~-~~g~~~~~~l~~~~~~ 94 (150)
T 4e7p_A 18 GSHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEK--ESVDIAILDVEMPV-KTGLEVLEWIRSEKLE 94 (150)
T ss_dssp --CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTT--SCCSEEEECSSCSS-SCHHHHHHHHHHTTCS
T ss_pred CCccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhc--cCCCEEEEeCCCCC-CcHHHHHHHHHHhCCC
Confidence 456899999999999999999999887 789999999999999998 78999999999999 99999999986 6
Q ss_pred CcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008619 89 LPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 89 iPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
+|||++|+..+.+...++++.||++||.||++.++|..+|+.++++
T Consensus 95 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 140 (150)
T 4e7p_A 95 TKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEG 140 (150)
T ss_dssp CEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTT
T ss_pred CeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999988865
No 39
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=99.79 E-value=1.1e-19 Score=158.97 Aligned_cols=118 Identities=18% Similarity=0.168 Sum_probs=108.4
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhCC-CEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----C
Q 008619 14 FPKGLRVLLLDQDSSAAAELKFKLEAMD-YIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----D 88 (559)
Q Consensus 14 ~p~glrVLIVDDD~~~~~~L~~~L~~~g-y~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----d 88 (559)
+..+.+|||||||+..+..|+.+|+..| |+|.++.++.+|++.+.+ ..||+||+|+.||+ ++|+++++.++ +
T Consensus 11 ~~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~--~~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~ 87 (135)
T 3snk_A 11 PTKRKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPAD--TRPGIVILDLGGGD-LLGKPGIVEARALWAT 87 (135)
T ss_dssp --CCEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCTT--CCCSEEEEEEETTG-GGGSTTHHHHHGGGTT
T ss_pred CCCCcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHhc--cCCCEEEEeCCCCC-chHHHHHHHHHhhCCC
Confidence 3456799999999999999999999999 999999999999999988 78999999999999 99999999886 6
Q ss_pred CcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008619 89 LPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 89 iPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
+|||++|+..+.+...++++.||++||.||++.++|..+++.++++
T Consensus 88 ~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 133 (135)
T 3snk_A 88 VPLIAVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHDTG 133 (135)
T ss_dssp CCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC--
T ss_pred CcEEEEeCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999887654
No 40
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=99.79 E-value=1.9e-18 Score=150.48 Aligned_cols=119 Identities=18% Similarity=0.235 Sum_probs=108.0
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCC-eeEEEEecCCCCCCCHHHHHHHcC-----C
Q 008619 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPEN-FHVAIVEVTTSNTDGSFKFLETAK-----D 88 (559)
Q Consensus 15 p~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~-pDLVIvDv~MPd~mdG~eLLe~Ir-----d 88 (559)
..+.+|||||||+..+..|+.+|+..||+|..+.++.+|+..+.+ .. ||+||+|+.|++ ++|+++++.++ +
T Consensus 5 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~--~~~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~~ 81 (136)
T 3hdv_A 5 AARPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHY--QKRIGLMITDLRMQP-ESGLDLIRTIRASERAA 81 (136)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHH--CTTEEEEEECSCCSS-SCHHHHHHHHHTSTTTT
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHh--CCCCcEEEEeccCCC-CCHHHHHHHHHhcCCCC
Confidence 346899999999999999999999999999999999999999988 55 999999999999 99999999885 4
Q ss_pred CcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008619 89 LPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 136 (559)
Q Consensus 89 iPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~ 136 (559)
+|||++|+..+.+...++++.||++||.||++.++|..+|++++.+..
T Consensus 82 ~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 129 (136)
T 3hdv_A 82 LSIIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIGE 129 (136)
T ss_dssp CEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC---
T ss_pred CCEEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcCch
Confidence 899999999999999999999999999999999999999998886543
No 41
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=99.79 E-value=1.1e-18 Score=152.52 Aligned_cols=116 Identities=12% Similarity=0.149 Sum_probs=106.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCC--CEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCc
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAMD--YIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLP 90 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~g--y~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diP 90 (559)
+++||||||++..+..+..+|+..| +.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ ++|
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~~--~~~dlvilD~~lp~-~~g~~~~~~l~~~~~~~~ 79 (133)
T 3b2n_A 3 LTSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEE--YNPNVVILDIEMPG-MTGLEVLAEIRKKHLNIK 79 (133)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHH--HCCSEEEECSSCSS-SCHHHHHHHHHHTTCSCE
T ss_pred ceEEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHhh--cCCCEEEEecCCCC-CCHHHHHHHHHHHCCCCc
Confidence 4799999999999999999999876 566799999999999988 67999999999999 99999999885 699
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008619 91 TIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (559)
Q Consensus 91 VImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~ 135 (559)
||++|+..+.+...++++.||++||.||++.++|..+++.++++.
T Consensus 80 ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 124 (133)
T 3b2n_A 80 VIIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNGE 124 (133)
T ss_dssp EEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC--
T ss_pred EEEEecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999887654
No 42
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=99.79 E-value=1.6e-18 Score=147.03 Aligned_cols=115 Identities=17% Similarity=0.247 Sum_probs=107.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC---CCcEEE
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTII 93 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir---diPVIm 93 (559)
|++||||||++..+..+..+|...||.|..+.++.+|+..+.. ..||+||+|+.||+ ++|+++++.++ .+|||+
T Consensus 1 m~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~~ii~ 77 (121)
T 1zh2_A 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAAT--RKPDLIILDLGLPD-GDGIEFIRDLRQWSAVPVIV 77 (121)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH--HCCSEEEEESEETT-EEHHHHHHHHHTTCCCCEEE
T ss_pred CcEEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCC-CcHHHHHHHHHhCCCCcEEE
Confidence 3689999999999999999999999999999999999999987 67999999999999 99999999885 699999
Q ss_pred EecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008619 94 TSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 94 LSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
+|+..+.....++++.||++||.||++.++|..+++.++++
T Consensus 78 ~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 118 (121)
T 1zh2_A 78 LSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 (121)
T ss_dssp EESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHhcCCCeEEeCCcCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988765
No 43
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=99.79 E-value=5.9e-19 Score=154.85 Aligned_cols=120 Identities=17% Similarity=0.248 Sum_probs=109.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhh-CCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCC-CCCCHHHHHHHcC------
Q 008619 16 KGLRVLLLDQDSSAAAELKFKLEA-MDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTS-NTDGSFKFLETAK------ 87 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~-~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MP-d~mdG~eLLe~Ir------ 87 (559)
.+++|||||||+..+..|+.+|+. .||+|+++.++.+|++.+.+. ..||+||+|+.|| + ++|+++++.++
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~-~~~dlvi~D~~l~~~-~~g~~~~~~l~~~~~~~ 80 (140)
T 3lua_A 3 LDGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDL-DSITLIIMDIAFPVE-KEGLEVLSAIRNNSRTA 80 (140)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTC-CCCSEEEECSCSSSH-HHHHHHHHHHHHSGGGT
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcC-CCCcEEEEeCCCCCC-CcHHHHHHHHHhCcccC
Confidence 468999999999999999999999 899999999999999998772 4699999999999 9 99999998875
Q ss_pred CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHh
Q 008619 88 DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFN 137 (559)
Q Consensus 88 diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~~ 137 (559)
++|||++|+..+.+.+.++++.||++||.||++.++|..+|+.++++...
T Consensus 81 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~ 130 (140)
T 3lua_A 81 NTPVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKICQR 130 (140)
T ss_dssp TCCEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC---
T ss_pred CCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhccc
Confidence 69999999999999999999999999999999999999999998876543
No 44
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=99.78 E-value=1.2e-18 Score=150.25 Aligned_cols=115 Identities=17% Similarity=0.304 Sum_probs=107.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCC-EEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC------C
Q 008619 16 KGLRVLLLDQDSSAAAELKFKLEAMDY-IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------D 88 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy-~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir------d 88 (559)
.+++||||||++..+..++.+|...|| .|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ .
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~--~~~dlvl~D~~l~~-~~g~~~~~~l~~~~~~~~ 81 (129)
T 1p6q_A 5 EKIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQ--NPHHLVISDFNMPK-MDGLGLLQAVRANPATKK 81 (129)
T ss_dssp SCCCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHT--SCCSEEEECSSSCS-SCHHHHHHHHTTCTTSTT
T ss_pred ccCeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHc--CCCCEEEEeCCCCC-CCHHHHHHHHhcCccccC
Confidence 357999999999999999999999999 78899999999999988 77999999999999 99999999986 4
Q ss_pred CcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008619 89 LPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 89 iPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
+|||++|+..+.+.+.++++.||++||.||++.++|..+++.+++
T Consensus 82 ~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 126 (129)
T 1p6q_A 82 AAFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFG 126 (129)
T ss_dssp CEEEECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999988764
No 45
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=99.78 E-value=1.1e-18 Score=157.28 Aligned_cols=116 Identities=18% Similarity=0.265 Sum_probs=108.7
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCC--CeeEEEEecCCCCCCCHHHHHHHcC----
Q 008619 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPE--NFHVAIVEVTTSNTDGSFKFLETAK---- 87 (559)
Q Consensus 15 p~glrVLIVDDD~~~~~~L~~~L~~~gy~V~-ta~~~~eAL~~Lre~~~--~pDLVIvDv~MPd~mdG~eLLe~Ir---- 87 (559)
.++++|||||||+..+..|..+|+..||+|+ ++.++.+|++.+.+ . .|||||+|+.|++ ++|+++++.++
T Consensus 34 ~~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~--~~~~~dliilD~~l~~-~~g~~~~~~lr~~~~ 110 (157)
T 3hzh_A 34 GIPFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKN--HYPNIDIVTLXITMPK-MDGITCLSNIMEFDK 110 (157)
T ss_dssp TEECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH--HGGGCCEEEECSSCSS-SCHHHHHHHHHHHCT
T ss_pred CCceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHh--cCCCCCEEEEeccCCC-ccHHHHHHHHHhhCC
Confidence 3457999999999999999999999999998 99999999999998 6 7999999999999 99999999986
Q ss_pred CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008619 88 DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 88 diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
.+|||++|+..+.+.+.++++.||++||.||++.++|..+|+.+++
T Consensus 111 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 156 (157)
T 3hzh_A 111 NARVIMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVFV 156 (157)
T ss_dssp TCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTTC
T ss_pred CCcEEEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 6999999999999999999999999999999999999999887653
No 46
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=99.78 E-value=1.7e-18 Score=151.95 Aligned_cols=118 Identities=19% Similarity=0.272 Sum_probs=109.2
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCc
Q 008619 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLP 90 (559)
Q Consensus 15 p~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diP 90 (559)
.++++|||||||+..+..|..+|+..||+|..+.++.+|++.+.+ ..||+||+|+ |++ ++|+++++.++ ++|
T Consensus 2 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvi~d~-~~~-~~g~~~~~~l~~~~~~~p 77 (142)
T 2qxy_A 2 SLTPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRR--EKIDLVFVDV-FEG-EESLNLIRRIREEFPDTK 77 (142)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTT--SCCSEEEEEC-TTT-HHHHHHHHHHHHHCTTCE
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhc--cCCCEEEEeC-CCC-CcHHHHHHHHHHHCCCCC
Confidence 346799999999999999999999999999999999999999998 7899999999 999 99999999885 699
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008619 91 TIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 136 (559)
Q Consensus 91 VImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~ 136 (559)
||++|+..+.+...++++.||++||.||++.++|..+++.++++..
T Consensus 78 ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 123 (142)
T 2qxy_A 78 VAVLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISSTP 123 (142)
T ss_dssp EEEEESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC--
T ss_pred EEEEECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999886543
No 47
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=99.78 E-value=3.2e-18 Score=152.63 Aligned_cols=119 Identities=23% Similarity=0.325 Sum_probs=109.4
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCC-eeEEEEecCCCCCCCHHHHHHHcC----C
Q 008619 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPEN-FHVAIVEVTTSNTDGSFKFLETAK----D 88 (559)
Q Consensus 14 ~p~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~-pDLVIvDv~MPd~mdG~eLLe~Ir----d 88 (559)
|+++++|||||||+..+..+..+|+. ||.|..+.++.+|++.+.+ .. ||+||+|+.||+ ++|+++++.++ +
T Consensus 1 M~~~~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~--~~~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~ 76 (151)
T 3kcn_A 1 MSLNERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKK--SDPFSVIMVDMRMPG-MEGTEVIQKARLISPN 76 (151)
T ss_dssp --CCCEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHH--SCCCSEEEEESCCSS-SCHHHHHHHHHHHCSS
T ss_pred CCCCCeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHc--CCCCCEEEEeCCCCC-CcHHHHHHHHHhcCCC
Confidence 45678999999999999999999986 8999999999999999988 54 699999999999 99999999886 7
Q ss_pred CcEEEEecCCCHHHHHHHHHcC-CCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008619 89 LPTIITSNIHCLSTMMKCIALG-AVEFLRKPLSEDKLRNLWQHVVHKAF 136 (559)
Q Consensus 89 iPVImLSa~~d~e~v~kAi~~G-A~DYLvKPis~eeL~~iIq~vlrr~~ 136 (559)
+|||++|+..+.+.+.+++..| |++||.||++.++|..+|+.++++..
T Consensus 77 ~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l~~~~ 125 (151)
T 3kcn_A 77 SVYLMLTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGIKQYD 125 (151)
T ss_dssp CEEEEEECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 99999999999999999999987654
No 48
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=99.78 E-value=2.4e-18 Score=149.98 Aligned_cols=116 Identities=17% Similarity=0.278 Sum_probs=108.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCC-----CCCCHHHHHHHcC---
Q 008619 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTS-----NTDGSFKFLETAK--- 87 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MP-----d~mdG~eLLe~Ir--- 87 (559)
.+++|||||||+..+..|..+|+..||+|..+.++.+|++.+.+ ..||+||+|+.|+ + ++|+++++.++
T Consensus 2 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvi~d~~~~~~~~~~-~~g~~~~~~l~~~~ 78 (140)
T 2qr3_A 2 SLGTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLRE--ENPEVVLLDMNFTSGINNG-NEGLFWLHEIKRQY 78 (140)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHH--SCEEEEEEETTTTC------CCHHHHHHHHHHHC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHc--CCCCEEEEeCCcCCCCCCC-ccHHHHHHHHHhhC
Confidence 46799999999999999999999999999999999999999999 7799999999999 8 99999999885
Q ss_pred -CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008619 88 -DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 88 -diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
.+|||++|+..+.+...++++.||++||.||++.++|..+++.++++
T Consensus 79 ~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~ 126 (140)
T 2qr3_A 79 RDLPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQ 126 (140)
T ss_dssp TTCCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHh
Confidence 79999999999999999999999999999999999999999988764
No 49
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=99.78 E-value=6.7e-18 Score=150.56 Aligned_cols=120 Identities=11% Similarity=0.153 Sum_probs=108.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCC--EEEEECCHHHHHHHhhcC-----CCCeeEEEEecCCCCCCCHHHHHHHcC-
Q 008619 16 KGLRVLLLDQDSSAAAELKFKLEAMDY--IVSTFYNENEALSAFSDK-----PENFHVAIVEVTTSNTDGSFKFLETAK- 87 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy--~V~ta~~~~eAL~~Lre~-----~~~pDLVIvDv~MPd~mdG~eLLe~Ir- 87 (559)
..++||||||++..+..++.+|+..|| .|..+.++.+|++.+... ...||+||+|+.||+ ++|+++++.++
T Consensus 7 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~-~~g~~l~~~l~~ 85 (149)
T 1i3c_A 7 PPKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPK-KDGREVLAEIKQ 85 (149)
T ss_dssp CCEEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSS-SCHHHHHHHHHH
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCC-CcHHHHHHHHHh
Confidence 357999999999999999999998877 788999999999999852 146999999999999 99999999885
Q ss_pred -----CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008619 88 -----DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 136 (559)
Q Consensus 88 -----diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~ 136 (559)
++|||++|+..+.+.+.++++.||++||.||++.++|..+++.+++...
T Consensus 86 ~~~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 139 (149)
T 1i3c_A 86 NPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIESFWL 139 (149)
T ss_dssp CTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHT
T ss_pred CcCcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHh
Confidence 5799999999999999999999999999999999999999999886654
No 50
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=99.78 E-value=3.8e-18 Score=148.82 Aligned_cols=119 Identities=19% Similarity=0.276 Sum_probs=108.7
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhh-CCCE-EEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----
Q 008619 14 FPKGLRVLLLDQDSSAAAELKFKLEA-MDYI-VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---- 87 (559)
Q Consensus 14 ~p~glrVLIVDDD~~~~~~L~~~L~~-~gy~-V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir---- 87 (559)
+..+++|||||||+..+..|..+|+. .||+ |..+.++.+|++.+.+ ..||+||+|+.|++ ++|+++++.++
T Consensus 5 ~~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~--~~~dlii~d~~l~~-~~g~~~~~~l~~~~~ 81 (143)
T 3cnb_A 5 VKNDFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHT--VKPDVVMLDLMMVG-MDGFSICHRIKSTPA 81 (143)
T ss_dssp ----CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHH--TCCSEEEEETTCTT-SCHHHHHHHHHTSTT
T ss_pred ccCCceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHh--cCCCEEEEecccCC-CcHHHHHHHHHhCcc
Confidence 34568999999999999999999999 8999 8899999999999998 78999999999999 99999999885
Q ss_pred --CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008619 88 --DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (559)
Q Consensus 88 --diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~ 135 (559)
.+|||++|+..+.....++++.||++||.||++.++|..+++.++++.
T Consensus 82 ~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 131 (143)
T 3cnb_A 82 TANIIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQK 131 (143)
T ss_dssp TTTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHTT
T ss_pred ccCCcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Confidence 589999999999999999999999999999999999999999988653
No 51
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.78 E-value=8.9e-18 Score=145.26 Aligned_cols=120 Identities=11% Similarity=0.154 Sum_probs=110.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCC--EEEEECCHHHHHHHhhcCC-----CCeeEEEEecCCCCCCCHHHHHHHcC--
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAMDY--IVSTFYNENEALSAFSDKP-----ENFHVAIVEVTTSNTDGSFKFLETAK-- 87 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy--~V~ta~~~~eAL~~Lre~~-----~~pDLVIvDv~MPd~mdG~eLLe~Ir-- 87 (559)
+++|||||||+..+..|..+|+..|| .|..+.++.+|++.+.+.. ..||+||+|+.|++ ++|+++++.++
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~-~~g~~~~~~l~~~ 80 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPK-KDGREVLAEIKSD 80 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSS-SCHHHHHHHHHHS
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCc-ccHHHHHHHHHcC
Confidence 57999999999999999999999998 8999999999999998621 46999999999999 99999999885
Q ss_pred ----CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHh
Q 008619 88 ----DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFN 137 (559)
Q Consensus 88 ----diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~~ 137 (559)
++|||++|+..+.+.+.++++.||++||.||++.++|..+++.++++...
T Consensus 81 ~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~ 134 (140)
T 1k68_A 81 PTLKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEEFWLS 134 (140)
T ss_dssp TTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHHT
T ss_pred cccccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHHHHcc
Confidence 58999999999999999999999999999999999999999999887654
No 52
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=99.78 E-value=1.3e-18 Score=153.25 Aligned_cols=120 Identities=13% Similarity=0.145 Sum_probs=109.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCC-CCCCHHHHHHHcC---CCcE
Q 008619 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTS-NTDGSFKFLETAK---DLPT 91 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MP-d~mdG~eLLe~Ir---diPV 91 (559)
.+++|||||||+..+..|..+|+..||.|..+.++.+|++.+.+. ..||+||+|+.|| + ++|+++++.++ ++||
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-~~~dlvi~D~~l~~~-~~g~~~~~~l~~~~~~~i 81 (140)
T 3h5i_A 4 KDKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGG-WYPDLILMDIELGEG-MDGVQTALAIQQISELPV 81 (140)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTT-CCCSEEEEESSCSSS-CCHHHHHHHHHHHCCCCE
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcC-CCCCEEEEeccCCCC-CCHHHHHHHHHhCCCCCE
Confidence 357999999999999999999999999999999999999999762 4799999999998 6 89999999886 7999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHh
Q 008619 92 IITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFN 137 (559)
Q Consensus 92 ImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~~ 137 (559)
|++|+..+.+.+.++++.||++||.||++.++|..+|+.++++...
T Consensus 82 i~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~ 127 (140)
T 3h5i_A 82 VFLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALRLYEA 127 (140)
T ss_dssp EEEESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 9999999888888999999999999999999999999999987654
No 53
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=99.77 E-value=3e-18 Score=148.97 Aligned_cols=115 Identities=18% Similarity=0.304 Sum_probs=107.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcEE
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTI 92 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPVI 92 (559)
+.+||||||++..+..+..+|...||.|..+.++.+|+..+.. ..||+||+|+.||+ ++|+++++.++ .+|||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~--~~~dlvl~D~~l~~-~~g~~~~~~l~~~~~~~~ii 79 (136)
T 1mvo_A 3 NKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAET--EKPDLIVLDVMLPK-LDGIEVCKQLRQQKLMFPIL 79 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--HCCSEEEEESSCSS-SCHHHHHHHHHHTTCCCCEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhh--cCCCEEEEecCCCC-CCHHHHHHHHHcCCCCCCEE
Confidence 4699999999999999999999999999999999999999988 67999999999999 99999999885 68999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008619 93 ITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 93 mLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
++|+..+......+++.||++||.||++.++|..+++.++++
T Consensus 80 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (136)
T 1mvo_A 80 MLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRR 121 (136)
T ss_dssp EEECTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHT
T ss_pred EEECCCCHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 999998888889999999999999999999999999888764
No 54
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=99.77 E-value=2.1e-18 Score=152.15 Aligned_cols=118 Identities=19% Similarity=0.273 Sum_probs=110.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC------CC
Q 008619 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DL 89 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir------di 89 (559)
.+++|||||||+..+..|..+|...||+|..+.++.+|++.+.+ ..||+||+|+.|++ ++|+++++.++ ++
T Consensus 7 ~~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlii~d~~l~~-~~g~~~~~~l~~~~~~~~~ 83 (147)
T 2zay_A 7 KWWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVK--THPHLIITEANMPK-ISGMDLFNSLKKNPQTASI 83 (147)
T ss_dssp -CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHH--HCCSEEEEESCCSS-SCHHHHHHHHHTSTTTTTS
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHc--CCCCEEEEcCCCCC-CCHHHHHHHHHcCcccCCC
Confidence 45899999999999999999999999999999999999999998 68999999999999 99999999885 58
Q ss_pred cEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008619 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 136 (559)
Q Consensus 90 PVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~ 136 (559)
|||++|+..+.+...++++.||++||.||++.++|..+|+.++++..
T Consensus 84 pii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~ 130 (147)
T 2zay_A 84 PVIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKLLY 130 (147)
T ss_dssp CEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred CEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987654
No 55
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=99.77 E-value=2.6e-18 Score=163.52 Aligned_cols=142 Identities=18% Similarity=0.253 Sum_probs=126.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcEE
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTI 92 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPVI 92 (559)
.++|||||||+..+..|..+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ ++|||
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~--~~~dlvllD~~l~~-~~g~~~~~~l~~~~~~~~ii 83 (233)
T 1ys7_A 7 SPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATE--NRPDAIVLDINMPV-LDGVSVVTALRAMDNDVPVC 83 (233)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--SCCSEEEEESSCSS-SCHHHHHHHHHHTTCCCCEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCCCEE
Confidence 4799999999999999999999999999999999999999998 78999999999999 99999999885 79999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHh--cC-CCC-------------------ccCCCcHH
Q 008619 93 ITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFN--AG-GSA-------------------LSDSLKPV 150 (559)
Q Consensus 93 mLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~~--~~-~~~-------------------~s~~Lt~r 150 (559)
++|+..+.+.+.++++.||++||.||++.++|..+++.++++... .. ... ....|+++
T Consensus 84 ~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~r 163 (233)
T 1ys7_A 84 VLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTATSSSETITVGPLEVDIPGRRARVNGVDVDLTKR 163 (233)
T ss_dssp EEECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHHHHCCCCCCCCEEEETTEEEETTTTEEEETTEECCCCHH
T ss_pred EEEcCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhccccccccCcccccCCeEEccCccEEEECCEEeccCHH
Confidence 999999988889999999999999999999999999999987643 11 110 01248999
Q ss_pred HHHHHHHHhhh
Q 008619 151 KESVVSMLHLK 161 (559)
Q Consensus 151 e~eVl~li~~~ 161 (559)
|.+++.++..+
T Consensus 164 E~~vL~~l~~g 174 (233)
T 1ys7_A 164 EFDLLAVLAEH 174 (233)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99999998876
No 56
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=99.77 E-value=3e-18 Score=146.32 Aligned_cols=113 Identities=13% Similarity=0.181 Sum_probs=100.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC------CCcE
Q 008619 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DLPT 91 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir------diPV 91 (559)
.+||||||++..+..++.+|+..||.|..+.++.+|+..+.. ..||+||+|+.||+ ++|+++++.++ .+||
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~--~~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~~~~~i 78 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARE--NKPDLILMDIQLPE-ISGLEVTKWLKEDDDLAHIPV 78 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHH--HCCSEEEEESBCSS-SBHHHHHHHHHHSTTTTTSCE
T ss_pred cEEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCC-CCHHHHHHHHHcCccccCCcE
Confidence 489999999999999999999999999999999999999988 67999999999999 99999998885 5899
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008619 92 IITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 92 ImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
|++|+..+.+....+++.||++||.||++.++|..+++.+++
T Consensus 79 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1mb3_A 79 VAVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLE 120 (124)
T ss_dssp EEEC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHS
T ss_pred EEEECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 999999888888999999999999999999999999887763
No 57
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=99.77 E-value=2e-18 Score=149.58 Aligned_cols=115 Identities=19% Similarity=0.304 Sum_probs=106.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-----CC
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAM-DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-----DL 89 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~-gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-----di 89 (559)
+++||||||++..+..++.+|... ||.++ ++.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ .+
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~~--~~~dlvllD~~l~~-~~g~~~~~~l~~~~~~~~ 78 (130)
T 1dz3_A 2 SIKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEE--KRPDILLLDIIMPH-LDGLAVLERIRAGFEHQP 78 (130)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHH--HCCSEEEEESCCSS-SCHHHHHHHHHHHCSSCC
T ss_pred ceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhc--CCCCEEEEecCCCC-CCHHHHHHHHHhcCCCCC
Confidence 368999999999999999999987 89876 89999999999988 67999999999999 99999998875 57
Q ss_pred cEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008619 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 90 PVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
|||++|+..+.+...++++.||++||.||++.++|..+++.++++
T Consensus 79 ~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~ 123 (130)
T 1dz3_A 79 NVIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYGK 123 (130)
T ss_dssp EEEEEEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHC
T ss_pred cEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhcC
Confidence 899999999999999999999999999999999999999887754
No 58
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=99.77 E-value=7.3e-19 Score=152.45 Aligned_cols=116 Identities=17% Similarity=0.169 Sum_probs=106.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcE
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPT 91 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPV 91 (559)
+++||||||++..+..++.+|+..||.++ .+.++.+|++.+.+ ..||+||+|+.||+ ++|+++++.++ ++||
T Consensus 1 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~--~~~dlii~d~~l~~-~~g~~~~~~l~~~~~~~~i 77 (134)
T 3f6c_A 1 SLNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVET--LKPDIVIIDVDIPG-VNGIQVLETLRKRQYSGII 77 (134)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHH--HCCSEEEEETTCSS-SCHHHHHHHHHHTTCCSEE
T ss_pred CeEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHh--cCCCEEEEecCCCC-CChHHHHHHHHhcCCCCeE
Confidence 37999999999999999999999999998 89999999999998 78999999999999 99999999986 6999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008619 92 IITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (559)
Q Consensus 92 ImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~ 135 (559)
|++|+..+.+...++++.||++||.||++.++|..+++.++++.
T Consensus 78 i~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 121 (134)
T 3f6c_A 78 IIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 121 (134)
T ss_dssp EEEECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTC
T ss_pred EEEeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 99999999989999999999999999999999999999888653
No 59
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.77 E-value=4.1e-18 Score=168.49 Aligned_cols=119 Identities=16% Similarity=0.217 Sum_probs=110.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCC-CeeEEEEecCCCCCCCHHHHHHHcC------C
Q 008619 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPE-NFHVAIVEVTTSNTDGSFKFLETAK------D 88 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~-~pDLVIvDv~MPd~mdG~eLLe~Ir------d 88 (559)
..++||||||++..+..+...|+..||.|.++.++.+|++.+.+ . .||+||+|+.||+ ++|+++++.++ .
T Consensus 123 ~~~~ILivDD~~~~~~~l~~~L~~~~~~v~~a~~~~eal~~l~~--~~~~dlvllD~~mP~-~dG~~l~~~lr~~~~~~~ 199 (259)
T 3luf_A 123 QQIEVLVVDDSRTSRHRTMAQLRKQLLQVHEASHAREALATLEQ--HPAIRLVLVDYYMPE-IDGISLVRMLRERYSKQQ 199 (259)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH--CTTEEEEEECSCCSS-SCHHHHHHHHHHHCCTTT
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhc--CCCCCEEEEcCCCCC-CCHHHHHHHHHhccCCCC
Confidence 45799999999999999999999999999999999999999987 4 4999999999999 99999999986 4
Q ss_pred CcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHh
Q 008619 89 LPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFN 137 (559)
Q Consensus 89 iPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~~ 137 (559)
+|||++|+..+.....++++.||+|||.||++.++|..++++++++...
T Consensus 200 ~~ii~~s~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~~ 248 (259)
T 3luf_A 200 LAIIGISVSDKRGLSARYLKQGANDFLNQPFEPEELQCRVSHNLEALEQ 248 (259)
T ss_dssp SEEEEEECSSSSSHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHC
T ss_pred CeEEEEEccCCHHHHHHHHhcChhheEcCCCCHHHHHHHHHHHHHhHhh
Confidence 8999999999999999999999999999999999999999999877543
No 60
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.77 E-value=1.4e-17 Score=145.86 Aligned_cols=121 Identities=13% Similarity=0.224 Sum_probs=111.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCC--EEEEECCHHHHHHHhhcCC--------CCeeEEEEecCCCCCCCHHHHHHH
Q 008619 16 KGLRVLLLDQDSSAAAELKFKLEAMDY--IVSTFYNENEALSAFSDKP--------ENFHVAIVEVTTSNTDGSFKFLET 85 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy--~V~ta~~~~eAL~~Lre~~--------~~pDLVIvDv~MPd~mdG~eLLe~ 85 (559)
.+++|||||||+..+..+..+|+..|| .|..+.++.+|++.+.+.. ..||+||+|+.|++ ++|+++++.
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~-~~g~~~~~~ 83 (149)
T 1k66_A 5 ATQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPG-TDGREVLQE 83 (149)
T ss_dssp TTSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSS-SCHHHHHHH
T ss_pred CCccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCC-CCHHHHHHH
Confidence 357999999999999999999999998 8999999999999998621 46999999999999 999999999
Q ss_pred cC------CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHh
Q 008619 86 AK------DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFN 137 (559)
Q Consensus 86 Ir------diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~~ 137 (559)
++ .+|||++|+..+.+...++++.||++||.||++.++|..+++.++++...
T Consensus 84 l~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~ 141 (149)
T 1k66_A 84 IKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIKYWLD 141 (149)
T ss_dssp HTTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHHT
T ss_pred HHhCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHhhh
Confidence 86 48999999999999999999999999999999999999999999887654
No 61
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=99.77 E-value=7.3e-18 Score=146.85 Aligned_cols=120 Identities=23% Similarity=0.330 Sum_probs=111.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCC-CCCCHHHHHHHcC---CCc
Q 008619 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTS-NTDGSFKFLETAK---DLP 90 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MP-d~mdG~eLLe~Ir---diP 90 (559)
.+++||||||++..+..|..+|+..||+|+ ++.++.+|++.+.+ ..||+||+|+.|+ + ++|+++++.++ .+|
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~--~~~dlii~d~~~~~~-~~g~~~~~~l~~~~~~~ 84 (140)
T 3cg0_A 8 DLPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPD--LRPDIALVDIMLCGA-LDGVETAARLAAGCNLP 84 (140)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH--HCCSEEEEESSCCSS-SCHHHHHHHHHHHSCCC
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHh--CCCCEEEEecCCCCC-CCHHHHHHHHHhCCCCC
Confidence 458999999999999999999999999999 69999999999998 6799999999998 8 99999999886 799
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHhc
Q 008619 91 TIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNA 138 (559)
Q Consensus 91 VImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~~~ 138 (559)
||++|+..+.+...++++.||++||.||++.++|..+++.++++....
T Consensus 85 ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~~ 132 (140)
T 3cg0_A 85 IIFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHKKKLE 132 (140)
T ss_dssp EEEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHHHHHC
T ss_pred EEEEecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHhccccC
Confidence 999999999999999999999999999999999999999999876543
No 62
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=99.77 E-value=1.1e-17 Score=149.28 Aligned_cols=118 Identities=21% Similarity=0.350 Sum_probs=110.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcE
Q 008619 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPT 91 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPV 91 (559)
.+++||||||++..+..|..+|...||.|..+.++.+|++.+.+ ..||+||+|+.|++ ++|+++++.++ .+||
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~~i 82 (154)
T 2rjn_A 6 KNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKG--TSVQLVISDMRMPE-MGGEVFLEQVAKSYPDIER 82 (154)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTT--SCCSEEEEESSCSS-SCHHHHHHHHHHHCTTSEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhc--CCCCEEEEecCCCC-CCHHHHHHHHHHhCCCCcE
Confidence 45899999999999999999999999999999999999999998 67999999999999 99999999885 7999
Q ss_pred EEEecCCCHHHHHHHHHcC-CCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008619 92 IITSNIHCLSTMMKCIALG-AVEFLRKPLSEDKLRNLWQHVVHKAF 136 (559)
Q Consensus 92 ImLSa~~d~e~v~kAi~~G-A~DYLvKPis~eeL~~iIq~vlrr~~ 136 (559)
|++|+..+.+...+++..| |++||.||++.++|..+|+.++++..
T Consensus 83 i~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~~~~ 128 (154)
T 2rjn_A 83 VVISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQLAF 128 (154)
T ss_dssp EEEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999998 99999999999999999999887643
No 63
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=99.77 E-value=5.9e-18 Score=146.34 Aligned_cols=116 Identities=17% Similarity=0.288 Sum_probs=101.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC------CC
Q 008619 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DL 89 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir------di 89 (559)
.+++|||||||+..+..|..+|+..||.|..+.++.+|++.+.+ ..||+||+|+.|++ ++|+++++.++ .+
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlii~d~~l~~-~~g~~~~~~l~~~~~~~~~ 81 (132)
T 3lte_A 5 QSKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLST--FEPAIMTLDLSMPK-LDGLDVIRSLRQNKVANQP 81 (132)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--TCCSEEEEESCBTT-BCHHHHHHHHHTTTCSSCC
T ss_pred CCccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHh--cCCCEEEEecCCCC-CCHHHHHHHHHhcCccCCC
Confidence 45799999999999999999999999999999999999999998 78999999999999 99999999985 25
Q ss_pred cEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008619 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (559)
Q Consensus 90 PVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~ 135 (559)
+||+++...+. .+.++++.||++||.||++.++|..+|+++....
T Consensus 82 ~ii~~~~~~~~-~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 126 (132)
T 3lte_A 82 KILVVSGLDKA-KLQQAVTEGADDYLEKPFDNDALLDRIHDLVNEG 126 (132)
T ss_dssp EEEEECCSCSH-HHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC--
T ss_pred eEEEEeCCChH-HHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCCC
Confidence 55555555554 7889999999999999999999999998887654
No 64
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=99.77 E-value=6.2e-18 Score=148.61 Aligned_cols=115 Identities=17% Similarity=0.243 Sum_probs=104.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC------CCc
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DLP 90 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir------diP 90 (559)
+++||||||++..+..+..+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ ++|
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--~~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~~~~~ 79 (138)
T 3c3m_A 3 LYTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNA--TPPDLVLLDIMMEP-MDGWETLERIKTDPATRDIP 79 (138)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--SCCSEEEEESCCSS-SCHHHHHHHHHHSTTTTTSC
T ss_pred cceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHhc--cCCCEEEEeCCCCC-CCHHHHHHHHHcCcccCCCC
Confidence 4799999999999999999999999999999999999999998 77999999999999 99999999885 589
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008619 91 TIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 91 VImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
||++|+..+......++..||++||.||++.++|..+++.++++
T Consensus 80 ii~ls~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~ 123 (138)
T 3c3m_A 80 VLMLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLAR 123 (138)
T ss_dssp EEEEESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSC
T ss_pred EEEEECCCChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHH
Confidence 99999988766666667777899999999999999999887743
No 65
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=99.77 E-value=9.6e-19 Score=150.00 Aligned_cols=115 Identities=14% Similarity=0.269 Sum_probs=107.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC------CCc
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DLP 90 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir------diP 90 (559)
+++||||||++..+..++.+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ ++|
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~--~~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~~~~~ 78 (127)
T 2jba_A 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE--PWPDLILLAWMLPG-GSGIQFIKHLRRESMTRDIP 78 (127)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTCSS--SCCSEEEEESEETT-EEHHHHHHHHHTSTTTTTSC
T ss_pred CcEEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhc--cCCCEEEEecCCCC-CCHHHHHHHHHhCcccCCCC
Confidence 3689999999999999999999999999999999999999988 68999999999999 99999999884 589
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008619 91 TIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 91 VImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
||++|+..+.+...++++.||++||.||++.++|..+++.++++
T Consensus 79 ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 122 (127)
T 2jba_A 79 VVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRR 122 (127)
T ss_dssp EEEEEETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHHC
T ss_pred EEEEeCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999887753
No 66
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=99.76 E-value=1.6e-18 Score=152.14 Aligned_cols=117 Identities=21% Similarity=0.301 Sum_probs=99.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC------CC
Q 008619 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DL 89 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir------di 89 (559)
.+++||||||++..+..|..+|+.. |.|..+.++.+|++.+.+ ..||+||+|+.|++ ++|+++++.++ ++
T Consensus 2 ~~~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~--~~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~~~~ 77 (140)
T 3n53_A 2 SLKKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQIDH--HHPDLVILDMDIIG-ENSPNLCLKLKRSKGLKNV 77 (140)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHH--HCCSEEEEETTC-------CHHHHHHTSTTCTTC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCC-CcHHHHHHHHHcCcccCCC
Confidence 3579999999999999999999988 999999999999999998 78999999999999 99999998885 58
Q ss_pred cEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008619 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 136 (559)
Q Consensus 90 PVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~ 136 (559)
|||++|+..+.+.+.++++.||++||.||++.++|..+++.++++..
T Consensus 78 ~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 124 (140)
T 3n53_A 78 PLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQN 124 (140)
T ss_dssp CEEEEECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred CEEEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHhhHH
Confidence 99999999998999999999999999999999999999999987754
No 67
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=99.76 E-value=4.5e-18 Score=161.84 Aligned_cols=119 Identities=22% Similarity=0.271 Sum_probs=105.6
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhCCC-EEEEECCHHHHHHHhhcC-----------CCCeeEEEEecCCCCCCCHHH
Q 008619 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDY-IVSTFYNENEALSAFSDK-----------PENFHVAIVEVTTSNTDGSFK 81 (559)
Q Consensus 14 ~p~glrVLIVDDD~~~~~~L~~~L~~~gy-~V~ta~~~~eAL~~Lre~-----------~~~pDLVIvDv~MPd~mdG~e 81 (559)
...+++|||||||+..+..|..+|+..|| .|..+.++.+|++.+.+. ...|||||+|+.||+ ++|++
T Consensus 58 ~~~~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~-~~G~e 136 (206)
T 3mm4_A 58 FLRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPE-MDGYE 136 (206)
T ss_dssp TTTTCEEEEECSCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSS-SCHHH
T ss_pred ccCCCEEEEEeCCHHHHHHHHHHHHHcCCCeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCC-CCHHH
Confidence 34568999999999999999999999998 899999999999999871 137999999999999 99999
Q ss_pred HHHHcC--------CCcEEEEecCC-CHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008619 82 FLETAK--------DLPTIITSNIH-CLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (559)
Q Consensus 82 LLe~Ir--------diPVImLSa~~-d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~ 135 (559)
+++.|+ ++|||++|+.. +.+.+.++++.||++||.||++ +|..+|+.++++.
T Consensus 137 l~~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~KP~~--~L~~~i~~~l~~~ 197 (206)
T 3mm4_A 137 ATREIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMDAFLDKSLN--QLANVIREIESKR 197 (206)
T ss_dssp HHHHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHTCSEEEETTCT--THHHHHHHHC---
T ss_pred HHHHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCCCCEEEcCcHH--HHHHHHHHHHhhh
Confidence 998874 58999999998 8888999999999999999999 8999988887654
No 68
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=99.76 E-value=3.4e-18 Score=162.73 Aligned_cols=142 Identities=15% Similarity=0.240 Sum_probs=125.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC---CCcEEE
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTII 93 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir---diPVIm 93 (559)
+++|||||||+..+..|..+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ ++|||+
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvllD~~l~~-~~g~~~~~~l~~~~~~~ii~ 80 (230)
T 2oqr_A 4 ATSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDR--AGADIVLLDLMLPG-MSGTDVCKQLRARSSVPVIM 80 (230)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHH--HCCSEEEEESSCSS-SCHHHHHHHHHHHCSCSEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--cCCCEEEEECCCCC-CCHHHHHHHHHcCCCCCEEE
Confidence 3799999999999999999999999999999999999999988 67999999999999 99999999886 799999
Q ss_pred EecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHhcCC----C-------------------CccCCCcHH
Q 008619 94 TSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGG----S-------------------ALSDSLKPV 150 (559)
Q Consensus 94 LSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~~~~~----~-------------------~~s~~Lt~r 150 (559)
+|+..+.+...++++.||++||.||++.++|..+++.++++...... . .....|+++
T Consensus 81 lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~r 160 (230)
T 2oqr_A 81 VTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDDDSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLK 160 (230)
T ss_dssp EECCHHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTTTTCTTSTTCCSCEEETTEEEETTTTEEEESSBCCCCCHH
T ss_pred EeCCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhcccccccccccceeecCEEEeccccEEEECCeeeecCHH
Confidence 99999999999999999999999999999999999999876421110 0 001358999
Q ss_pred HHHHHHHHhhh
Q 008619 151 KESVVSMLHLK 161 (559)
Q Consensus 151 e~eVl~li~~~ 161 (559)
|.+++.++..+
T Consensus 161 E~~vL~~l~~~ 171 (230)
T 2oqr_A 161 EFDLLEYLMRN 171 (230)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99999988776
No 69
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=99.76 E-value=1.4e-17 Score=145.39 Aligned_cols=114 Identities=24% Similarity=0.329 Sum_probs=103.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC--------
Q 008619 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-------- 87 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-------- 87 (559)
.+++||||||++..+..+..+|+..||+|.++.++.+|++.+.. .. |+||+|+.||+ ++|+++++.++
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~--~~-dlvllD~~lp~-~~g~~~~~~l~~~~~~~~~ 81 (136)
T 1dcf_A 6 TGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSH--EH-KVVFMDVCMPG-VENYQIALRIHEKFTKQRH 81 (136)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCCT--TC-SEEEEECCSST-TTTTHHHHHHHHHHC-CCS
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhc--cC-CEEEEeCCCCC-CcHHHHHHHHHHhhhhccC
Confidence 45899999999999999999999999999999999999999876 44 99999999999 99999998875
Q ss_pred CC-cEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008619 88 DL-PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 88 di-PVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
.. +||++|+..+.....++++.||++||.||++.++|..+++.+++
T Consensus 82 ~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~ 128 (136)
T 1dcf_A 82 QRPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLE 128 (136)
T ss_dssp CCCEEEEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHS
T ss_pred CCceEEEEeCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhc
Confidence 23 57889999999999999999999999999999999999887764
No 70
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.76 E-value=8.6e-19 Score=176.98 Aligned_cols=114 Identities=12% Similarity=0.221 Sum_probs=106.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCC-CCCCHHHHHHHcC---CCcE
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTS-NTDGSFKFLETAK---DLPT 91 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MP-d~mdG~eLLe~Ir---diPV 91 (559)
+.+|||||||+..+..+..+|+..||.|+ ++.++.+|++.+.+ ..|||||+|+.|| + |||+++++.|+ ++||
T Consensus 160 ~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~~--~~~dlvl~D~~MPd~-mdG~e~~~~ir~~~~~pi 236 (286)
T 3n0r_A 160 ATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVTR--RTPGLVLADIQLADG-SSGIDAVKDILGRMDVPV 236 (286)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH--CCCSEEEEESCCTTS-CCTTTTTHHHHHHTTCCE
T ss_pred CCcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHHHh--CCCCEEEEcCCCCCC-CCHHHHHHHHHhcCCCCE
Confidence 35899999999999999999999999999 99999999999999 7899999999999 8 99999999987 7999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008619 92 IITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (559)
Q Consensus 92 ImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~ 135 (559)
|++|++.+ ...+++++||++||.||++.++|..+|+.++.+.
T Consensus 237 I~lT~~~~--~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~l~~~ 278 (286)
T 3n0r_A 237 IFITAFPE--RLLTGERPEPTFLITKPFQPETVKAAIGQALFFH 278 (286)
T ss_dssp EEEESCGG--GGCCSSSCCCSSEEESSCCHHHHHHHHHHHHHHS
T ss_pred EEEeCCHH--HHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHhC
Confidence 99999864 4677999999999999999999999999988763
No 71
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=99.76 E-value=2.9e-18 Score=150.10 Aligned_cols=119 Identities=10% Similarity=0.170 Sum_probs=110.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC------CC
Q 008619 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DL 89 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir------di 89 (559)
.+++|||||||+..+..|..+|...||+|..+.++.+|++.+.+ ..||+||+|+.|++ ++|+++++.++ .+
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlii~d~~l~~-~~g~~~~~~l~~~~~~~~~ 82 (142)
T 3cg4_A 6 HKGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKK--GFSGVVLLDIMMPG-MDGWDTIRAILDNSLEQGI 82 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHT--CCCEEEEEESCCSS-SCHHHHHHHHHHTTCCTTE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCC-CCHHHHHHHHHhhcccCCC
Confidence 45899999999999999999999999999999999999999998 77999999999999 99999998874 58
Q ss_pred cEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHh
Q 008619 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFN 137 (559)
Q Consensus 90 PVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~~ 137 (559)
|||++|+..+.+...++++.||++||.||++.++|..+++.++++...
T Consensus 83 pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~ 130 (142)
T 3cg4_A 83 AIVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMGFVRN 130 (142)
T ss_dssp EEEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHHHHhh
Confidence 999999998888888999999999999999999999999999987654
No 72
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=99.76 E-value=3.9e-18 Score=151.05 Aligned_cols=117 Identities=13% Similarity=0.234 Sum_probs=101.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhh--CCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CC
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEA--MDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DL 89 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~--~gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----di 89 (559)
+++||||||++..+..+..+|.. .||.++ .+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ .+
T Consensus 2 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~~~--~~~dlvllD~~lp~-~~g~~l~~~l~~~~~~~ 78 (141)
T 3cu5_A 2 SLRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIALK--HPPNVLLTDVRMPR-MDGIELVDNILKLYPDC 78 (141)
T ss_dssp CCEEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHTT--SCCSEEEEESCCSS-SCHHHHHHHHHHHCTTC
T ss_pred cceEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHHHHHHHhc--CCCCEEEEeCCCCC-CCHHHHHHHHHhhCCCC
Confidence 46999999999999999999973 688877 99999999999988 67999999999999 99999999885 69
Q ss_pred cEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008619 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 136 (559)
Q Consensus 90 PVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~ 136 (559)
|||++|+..+.+.+.++++.||++||.||++.++|..+++.++++..
T Consensus 79 ~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 125 (141)
T 3cu5_A 79 SVIFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQTVL 125 (141)
T ss_dssp EEEEECCSTTTCCC------CCCEEECSSCCHHHHHHHHHHHHHHHH
T ss_pred cEEEEeCCCcHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 99999999888888899999999999999999999999999887654
No 73
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=99.76 E-value=7.1e-19 Score=168.74 Aligned_cols=147 Identities=18% Similarity=0.170 Sum_probs=126.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCC-CEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCc
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAMD-YIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLP 90 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~g-y~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diP 90 (559)
+++|||||||+..+..|..+|...| |.++ .+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ ++|
T Consensus 1 m~~ILivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l~~--~~~dlvllD~~lp~-~~g~~~~~~lr~~~~~~~ 77 (225)
T 3c3w_A 1 MVKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPA--ARPDVAVLDVRLPD-GNGIELCRDLLSRMPDLR 77 (225)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHHH--HCCSEEEECSEETT-EEHHHHHHHHHHHCTTCE
T ss_pred CcEEEEEcCCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhh--cCCCEEEEeCCCCC-CCHHHHHHHHHHhCCCCc
Confidence 3799999999999999999999886 9855 89999999999988 67999999999999 99999999885 799
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHhcCC----------------CCccCCCcHHHHHH
Q 008619 91 TIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGG----------------SALSDSLKPVKESV 154 (559)
Q Consensus 91 VImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~~~~~----------------~~~s~~Lt~re~eV 154 (559)
||++|+..+.+.+.++++.||++||.||++.++|..+++.++++...... ......|+++|.++
T Consensus 78 ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~rE~~v 157 (225)
T 3c3w_A 78 CLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGAGRSLLDNRAAAALMAKLRGAAEKQDPLSGLTDQERTL 157 (225)
T ss_dssp EEEGGGSSSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHSCTTTTSCHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcCCeeeCHHHHHHHHHhcccccccccccCCCCHHHHHH
Confidence 99999999999999999999999999999999999999998876321100 01234689999999
Q ss_pred HHHHhhhhcccc
Q 008619 155 VSMLHLKLENGE 166 (559)
Q Consensus 155 l~li~~~~~~~e 166 (559)
+.++..+.++.+
T Consensus 158 L~~l~~g~s~~e 169 (225)
T 3c3w_A 158 LGLLSEGLTNKQ 169 (225)
T ss_dssp HHHHHTTCCHHH
T ss_pred HHHHHCCCCHHH
Confidence 998887755443
No 74
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=99.75 E-value=1.5e-17 Score=148.55 Aligned_cols=117 Identities=23% Similarity=0.369 Sum_probs=109.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcEE
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTI 92 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPVI 92 (559)
.++||||||++..+..|..+|...||+|..+.++.+|+..+.. ..||+||+|+.|++ ++|+++++.++ .+|||
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dliild~~l~~-~~g~~~~~~l~~~~~~~pii 79 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSA--DFAGIVISDIRMPG-MDGLALFRKILALDPDLPMI 79 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCT--TCCSEEEEESCCSS-SCHHHHHHHHHHHCTTSCEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCC-CCHHHHHHHHHhhCCCCCEE
Confidence 4799999999999999999999999999999999999999988 78999999999999 99999999885 79999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008619 93 ITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 136 (559)
Q Consensus 93 mLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~ 136 (559)
++|+..+.+.+..+++.||++||.||++.++|..+++.++++..
T Consensus 80 ~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~~~ 123 (155)
T 1qkk_A 80 LVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEKRR 123 (155)
T ss_dssp EEECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987644
No 75
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=99.75 E-value=1.2e-17 Score=148.68 Aligned_cols=119 Identities=13% Similarity=0.123 Sum_probs=108.6
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhCCCE--EEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----
Q 008619 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDYI--VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---- 87 (559)
Q Consensus 14 ~p~glrVLIVDDD~~~~~~L~~~L~~~gy~--V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir---- 87 (559)
...+.+||||||++..+..|+.+|+..|+. |..+.++.+|++.+.+ ..|||||+|+.|++ ++|+++++.++
T Consensus 12 ~~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~--~~~dlii~d~~l~~-~~g~~~~~~l~~~~~ 88 (152)
T 3eul_A 12 QPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKA--HLPDVALLDYRMPG-MDGAQVAAAVRSYEL 88 (152)
T ss_dssp --CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHH--HCCSEEEEETTCSS-SCHHHHHHHHHHTTC
T ss_pred CCceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCC-CCHHHHHHHHHhcCC
Confidence 345689999999999999999999988843 4489999999999998 78999999999999 99999999986
Q ss_pred CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008619 88 DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (559)
Q Consensus 88 diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~ 135 (559)
.+|||++|+..+.+.+.++++.||++||.||++.++|..+++.++++.
T Consensus 89 ~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 136 (152)
T 3eul_A 89 PTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGR 136 (152)
T ss_dssp SCEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC
T ss_pred CCeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCC
Confidence 699999999999999999999999999999999999999999988754
No 76
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=99.75 E-value=3.9e-18 Score=144.28 Aligned_cols=110 Identities=20% Similarity=0.313 Sum_probs=101.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcEEE
Q 008619 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTII 93 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPVIm 93 (559)
.+||||||++..+..+...|+..||.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ ++|||+
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~--~~~dlvl~D~~l~~-~~g~~~~~~l~~~~~~~~ii~ 78 (116)
T 3a10_A 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFS--GNYDLVILDIEMPG-ISGLEVAGEIRKKKKDAKIIL 78 (116)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--SCCSEEEECSCCSS-SCHHHHHHHHHHHCTTCCEEE
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc--CCCCEEEEECCCCC-CCHHHHHHHHHccCCCCeEEE
Confidence 589999999999999999999999999999999999999998 78999999999999 99999999885 699999
Q ss_pred EecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 008619 94 TSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVV 132 (559)
Q Consensus 94 LSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vl 132 (559)
+|+..+.. ..++..||++||.||++.++|..+++.++
T Consensus 79 ~s~~~~~~--~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 79 LTAYSHYR--SDMSSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp EESCGGGG--GCGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred EECCcchH--HHHHhccccceEECCCCHHHHHHHHHHHh
Confidence 99987655 67889999999999999999999887754
No 77
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=99.75 E-value=8.8e-18 Score=165.25 Aligned_cols=118 Identities=17% Similarity=0.306 Sum_probs=111.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcE
Q 008619 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPT 91 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPV 91 (559)
.+++||||||++..+..+..+|+..||+|..+.++.+|++.+.+ ..||+||+|+.||+ ++|+++++.|+ ++||
T Consensus 128 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~--~~~dlvl~D~~mp~-~~G~~l~~~ir~~~~~~pi 204 (254)
T 2ayx_A 128 DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSK--NHIDIVLSDVNMPN-MDGYRLTQRIRQLGLTLPV 204 (254)
T ss_dssp CCCEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHHH--SCCSEEEEEESSCS-SCCHHHHHHHHHHHCCSCE
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh--CCCCEEEEcCCCCC-CCHHHHHHHHHhcCCCCcE
Confidence 45899999999999999999999999999999999999999998 77999999999999 99999999986 7999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008619 92 IITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 136 (559)
Q Consensus 92 ImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~ 136 (559)
|++|+..+.+...++++.||++||.||++.++|..++++++++..
T Consensus 205 I~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~~ 249 (254)
T 2ayx_A 205 IGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAERVR 249 (254)
T ss_dssp EEEESSTTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHcCCceEEECCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999887654
No 78
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=99.75 E-value=3.3e-18 Score=164.90 Aligned_cols=141 Identities=16% Similarity=0.236 Sum_probs=124.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC---CCcEEEE
Q 008619 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTIIT 94 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir---diPVImL 94 (559)
++|||||||+..+..|..+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ ++|||++
T Consensus 6 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--~~~dlvilD~~l~~-~~g~~~~~~lr~~~~~~ii~l 82 (238)
T 2gwr_A 6 QRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRE--LRPDLVLLDLMLPG-MNGIDVCRVLRADSGVPIVML 82 (238)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHH--HCCSEEEEESSCSS-SCHHHHHHHHHTTCCCCEEEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCC-CCHHHHHHHHHhCCCCcEEEE
Confidence 699999999999999999999999999999999999999988 67999999999999 99999999986 6999999
Q ss_pred ecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHhcCCC-------------------CccCCCcHHHHHHH
Q 008619 95 SNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGGS-------------------ALSDSLKPVKESVV 155 (559)
Q Consensus 95 Sa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~~~~~~-------------------~~s~~Lt~re~eVl 155 (559)
|+..+.+.+..+++.||++||.||++.++|..+|+.++++....... .....|+++|.+++
T Consensus 83 t~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~rE~~vL 162 (238)
T 2gwr_A 83 TAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRNDDEPAEMLSIADVEIDVPAHKVTRNGEQISLTPLEFDLL 162 (238)
T ss_dssp EETTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCCCCSSCCCCEEEETTEEEETTTTEEEETTEEECCCHHHHHHH
T ss_pred eCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhcccCcccceecCceEEcccccEEEECCEEcccCHHHHHHH
Confidence 99999888999999999999999999999999999888653211110 00125899999999
Q ss_pred HHHhhh
Q 008619 156 SMLHLK 161 (559)
Q Consensus 156 ~li~~~ 161 (559)
.++..+
T Consensus 163 ~~l~~~ 168 (238)
T 2gwr_A 163 VALARK 168 (238)
T ss_dssp HHHHHS
T ss_pred HHHHHC
Confidence 988876
No 79
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=99.75 E-value=8.3e-18 Score=157.94 Aligned_cols=118 Identities=16% Similarity=0.177 Sum_probs=110.1
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC---CCc
Q 008619 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLP 90 (559)
Q Consensus 15 p~glrVLIVDDD~~~~~~L~~~L~~~gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir---diP 90 (559)
++..+|||||||+..+..|..+|...||.|+ .+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ ..|
T Consensus 11 ~m~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~~--~~~dlvi~D~~~p~-~~g~~~~~~l~~~~~~p 87 (205)
T 1s8n_A 11 AVPRRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAEL--HKPDLVIMDVKMPR-RDGIDAASEIASKRIAP 87 (205)
T ss_dssp CCCCEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH--HCCSEEEEESSCSS-SCHHHHHHHHHHTTCSC
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhh--cCCCEEEEeCCCCC-CChHHHHHHHHhcCCCC
Confidence 3347999999999999999999999999998 99999999999988 67999999999999 99999999986 469
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008619 91 TIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (559)
Q Consensus 91 VImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~ 135 (559)
||++|+..+.+.+.++++.||++||.||++.++|..+++.++++.
T Consensus 88 ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 132 (205)
T 1s8n_A 88 IVVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRF 132 (205)
T ss_dssp EEEEEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988764
No 80
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=99.75 E-value=3.8e-18 Score=150.68 Aligned_cols=119 Identities=15% Similarity=0.260 Sum_probs=108.3
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCC-CEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CC
Q 008619 15 PKGLRVLLLDQDSSAAAELKFKLEAMD-YIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DL 89 (559)
Q Consensus 15 p~glrVLIVDDD~~~~~~L~~~L~~~g-y~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----di 89 (559)
....+|||||||+..+..|..+|+..| |.|+.+.++.+++..+.+....|||||+|+.|++ ++|+++++.++ .+
T Consensus 18 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~l~~-~~g~~~~~~l~~~~~~~ 96 (146)
T 4dad_A 18 QGMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFDILMIDGAALD-TAELAAIEKLSRLHPGL 96 (146)
T ss_dssp GGGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHHHHTTCSEEEEECTTCC-HHHHHHHHHHHHHCTTC
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCCCCCEEEEeCCCCC-ccHHHHHHHHHHhCCCC
Confidence 346899999999999999999999988 9999999999998877541036999999999999 99999999886 69
Q ss_pred cEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008619 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 90 PVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
|||++|+..+.+.+.++++.||++||.||++.++|..+|+.++++
T Consensus 97 ~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 141 (146)
T 4dad_A 97 TCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQ 141 (146)
T ss_dssp EEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHT
T ss_pred cEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999988865
No 81
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=99.75 E-value=2.1e-17 Score=144.60 Aligned_cols=119 Identities=16% Similarity=0.179 Sum_probs=107.8
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCC--EEEEECCHHHHHHHhhcC---CCCeeEEEEecCCCCCCCHHHHHHHcC--
Q 008619 15 PKGLRVLLLDQDSSAAAELKFKLEAMDY--IVSTFYNENEALSAFSDK---PENFHVAIVEVTTSNTDGSFKFLETAK-- 87 (559)
Q Consensus 15 p~glrVLIVDDD~~~~~~L~~~L~~~gy--~V~ta~~~~eAL~~Lre~---~~~pDLVIvDv~MPd~mdG~eLLe~Ir-- 87 (559)
..+++||||||++..+..+..+|+..|| .|..+.++.+|++.+.+. ...||+||+|+.||+ ++|+++++.++
T Consensus 7 ~~~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~-~~g~~~~~~l~~~ 85 (146)
T 3ilh_A 7 RKIDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDINMPG-INGWELIDLFKQH 85 (146)
T ss_dssp CCEEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSCSS-SCHHHHHHHHHHH
T ss_pred CccceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCCCC-CCHHHHHHHHHHh
Confidence 3468999999999999999999999998 889999999999999761 146999999999999 99999998764
Q ss_pred ------CCcEEEEecCCCHHHHHHHHHcC-CCEEEeCCCCHHHHHHHHHHHHHH
Q 008619 88 ------DLPTIITSNIHCLSTMMKCIALG-AVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 88 ------diPVImLSa~~d~e~v~kAi~~G-A~DYLvKPis~eeL~~iIq~vlrr 134 (559)
.+|||++|+..+.+...+++..| |++||.||++.++|..+|+++...
T Consensus 86 ~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~~ 139 (146)
T 3ilh_A 86 FQPMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNE 139 (146)
T ss_dssp CGGGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHCC
T ss_pred hhhccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHHh
Confidence 58999999999999999999999 999999999999999998887754
No 82
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=99.75 E-value=1.4e-17 Score=148.40 Aligned_cols=116 Identities=14% Similarity=0.222 Sum_probs=108.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhh-CCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CC
Q 008619 16 KGLRVLLLDQDSSAAAELKFKLEA-MDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DL 89 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~-~gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----di 89 (559)
.+++|||||||+..+..|..+|.. .||.|+ .+.++.+|++.+.+ ..||+||+|+.|++ ++|+++++.++ .+
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~--~~~dlii~D~~l~~-~~g~~~~~~l~~~~~~~ 80 (153)
T 3cz5_A 4 STARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRE--TTPDIVVMDLTLPG-PGGIEATRHIRQWDGAA 80 (153)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHT--TCCSEEEECSCCSS-SCHHHHHHHHHHHCTTC
T ss_pred cccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhc--CCCCEEEEecCCCC-CCHHHHHHHHHHhCCCC
Confidence 357999999999999999999998 799998 99999999999998 77999999999999 99999999986 69
Q ss_pred cEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008619 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 90 PVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
|||++|+..+.+...++++.||++||.||++.++|..+++.++++
T Consensus 81 ~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~ 125 (153)
T 3cz5_A 81 RILIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAG 125 (153)
T ss_dssp CEEEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTT
T ss_pred eEEEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999887754
No 83
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.74 E-value=8e-18 Score=176.02 Aligned_cols=115 Identities=27% Similarity=0.356 Sum_probs=109.9
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcEEEE
Q 008619 19 RVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTIIT 94 (559)
Q Consensus 19 rVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPVImL 94 (559)
+|||||||+..+..|+.+|+..||.|.++.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ ++|||++
T Consensus 2 ~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~--~~~DlvllDi~mP~-~dG~ell~~lr~~~~~~pvI~l 78 (368)
T 3dzd_A 2 RVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKE--LFFPVIVLDVWMPD-GDGVNFIDFIKENSPDSVVIVI 78 (368)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--BCCSEEEEESEETT-EETTTHHHHHHHHCTTCEEEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCC-CCHHHHHHHHHhhCCCCeEEEE
Confidence 79999999999999999999999999999999999999998 78999999999999 99999999886 7999999
Q ss_pred ecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008619 95 SNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 136 (559)
Q Consensus 95 Sa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~ 136 (559)
|++.+.+.+.++++.||+|||.||++.++|..+|++++.+..
T Consensus 79 T~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~ 120 (368)
T 3dzd_A 79 TGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFEEYS 120 (368)
T ss_dssp ECSSCCHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHHS
T ss_pred eCCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999987654
No 84
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=99.74 E-value=1.3e-17 Score=141.94 Aligned_cols=112 Identities=16% Similarity=0.268 Sum_probs=104.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCC-CCCCHHHHHHHcC------CCc
Q 008619 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTS-NTDGSFKFLETAK------DLP 90 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MP-d~mdG~eLLe~Ir------diP 90 (559)
++||||||++..+..+..+|+..||+|..+.++.+|++.+.+ ..||+||+|+.|+ + ++|+++++.++ ++|
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~--~~~dlvi~d~~~~~~-~~g~~~~~~l~~~~~~~~~~ 82 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRR--DRPDLVVLAVDLSAG-QNGYLICGKLKKDDDLKNVP 82 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHH--HCCSEEEEESBCGGG-CBHHHHHHHHHHSTTTTTSC
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHh--cCCCEEEEeCCCCCC-CCHHHHHHHHhcCccccCCC
Confidence 699999999999999999999999999999999999999998 6799999999999 8 99999998874 689
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008619 91 TIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 91 VImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
||++ +..+.+...++++.||++||.||++.++|..+++++++
T Consensus 83 ii~~-~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 124 (127)
T 2gkg_A 83 IVII-GNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALIG 124 (127)
T ss_dssp EEEE-ECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHHC
T ss_pred EEEE-ecCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHHc
Confidence 9999 88888889999999999999999999999999888763
No 85
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=99.73 E-value=2.8e-17 Score=155.69 Aligned_cols=139 Identities=17% Similarity=0.273 Sum_probs=121.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcEE
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTI 92 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPVI 92 (559)
|++|||||||+..+..|..+|+..| .|..+.++.+|++.+ . .||+||+|+.||+ ++|+++++.++ ++|||
T Consensus 2 m~~ilivdd~~~~~~~l~~~L~~~~-~v~~~~~~~~al~~~-~---~~dlvllD~~lp~-~~g~~~~~~lr~~~~~~~ii 75 (220)
T 1p2f_A 2 MWKIAVVDDDKNILKKVSEKLQQLG-RVKTFLTGEDFLNDE-E---AFHVVVLDVMLPD-YSGYEICRMIKETRPETWVI 75 (220)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTTE-EEEEESSHHHHHHCC-S---CCSEEEEESBCSS-SBHHHHHHHHHHHCTTSEEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCC-CEEEECCHHHHHHhc-C---CCCEEEEeCCCCC-CCHHHHHHHHHhcCCCCcEE
Confidence 4799999999999999999999988 888999999999977 3 5999999999999 99999999885 79999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHhc----CC-----C-------CccCCCcHHHHHHHH
Q 008619 93 ITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNA----GG-----S-------ALSDSLKPVKESVVS 156 (559)
Q Consensus 93 mLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~~~----~~-----~-------~~s~~Lt~re~eVl~ 156 (559)
++|+..+.+.+.++++.||++||.||++.++|..+++.++++.... .. . .....|+++|.+++.
T Consensus 76 ~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~~vl~ 155 (220)
T 1p2f_A 76 LLTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLEREKKGLYDFGDLKIDATGFTVFLKGKRIHLPKKEFEILL 155 (220)
T ss_dssp EEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHCCCSEEEETTEEEETTTTEEEETTEECCCCHHHHHHHH
T ss_pred EEEcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHccccccCcccccEEEECCCCEEEECCEEEecCHHHHHHHH
Confidence 9999999999999999999999999999999999999998764200 00 0 011348999999999
Q ss_pred HHhhh
Q 008619 157 MLHLK 161 (559)
Q Consensus 157 li~~~ 161 (559)
++..+
T Consensus 156 ~l~~~ 160 (220)
T 1p2f_A 156 FLAEN 160 (220)
T ss_dssp HHHHT
T ss_pred HHHHC
Confidence 98876
No 86
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=99.73 E-value=6.5e-17 Score=141.90 Aligned_cols=114 Identities=23% Similarity=0.317 Sum_probs=104.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcEEE
Q 008619 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTII 93 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPVIm 93 (559)
.+|||||||+..+..+..+|... |.|..+.++.+|+..+.. ..||+||+|+.||+ ++|+++++.++ .+|||+
T Consensus 2 ~~Ilivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~--~~~dlvl~D~~lp~-~~g~~~~~~l~~~~~~~~ii~ 77 (139)
T 2jk1_A 2 PAILLVDDEPHSLAAMKLALEDD-FDVLTAQGAEAAIAILEE--EWVQVIICDQRMPG-RTGVDFLTEVRERWPETVRII 77 (139)
T ss_dssp CEEEEECSSHHHHHHHHHHHTTT-SCEEEESSHHHHHHHHHH--SCEEEEEEESCCSS-SCHHHHHHHHHHHCTTSEEEE
T ss_pred CeEEEEcCCHHHHHHHHHHhhcC-ceEEEcCCHHHHHHHHhc--CCCCEEEEeCCCCC-CcHHHHHHHHHHhCCCCcEEE
Confidence 37999999999999999999876 999999999999999988 67999999999999 99999999885 689999
Q ss_pred EecCCCHHHHHHHHHc-CCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008619 94 TSNIHCLSTMMKCIAL-GAVEFLRKPLSEDKLRNLWQHVVHKA 135 (559)
Q Consensus 94 LSa~~d~e~v~kAi~~-GA~DYLvKPis~eeL~~iIq~vlrr~ 135 (559)
+|+..+.....+++.. ||++||.||++.++|..+++.++++.
T Consensus 78 ~s~~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 120 (139)
T 2jk1_A 78 ITGYTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAARMF 120 (139)
T ss_dssp EESCTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EeCCCChHHHHHHHHhhchhhhccCCCCHHHHHHHHHHHHHHH
Confidence 9999988888889876 59999999999999999999988654
No 87
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=99.73 E-value=1.1e-17 Score=144.57 Aligned_cols=115 Identities=16% Similarity=0.215 Sum_probs=104.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcE
Q 008619 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPT 91 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPV 91 (559)
.+++|||||||+..+..++.+|+..++.|..+.++++|+..+.+ . ||+||+|+.|++ ++|+++++.++ .+||
T Consensus 2 ~~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~-~dlvi~D~~l~~-~~g~~~~~~l~~~~~~~~i 77 (135)
T 3eqz_A 2 SLNRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLSLN--K-QDIIILDLMMPD-MDGIEVIRHLAEHKSPASL 77 (135)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHTTTCSCEEEESCHHHHTTSCCC--T-TEEEEEECCTTT-THHHHHHHHHHHTTCCCEE
T ss_pred CcceEEEEeCCHHHHHHHHHHHHhhcceeeeecCHHHHHHhhcc--C-CCEEEEeCCCCC-CCHHHHHHHHHhCCCCCCE
Confidence 35799999999999999999999888899999999999998887 6 999999999999 99999999986 6999
Q ss_pred EEEecCCCH-----HHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008619 92 IITSNIHCL-----STMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 92 ImLSa~~d~-----e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
|++|+..+. +.+.+++..||++||.||++.++|..+++++..+
T Consensus 78 i~~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~ 125 (135)
T 3eqz_A 78 ILISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNR 125 (135)
T ss_dssp EEEESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCC
T ss_pred EEEEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhh
Confidence 999998875 7778899999999999999999999998887643
No 88
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=99.73 E-value=6.8e-17 Score=141.53 Aligned_cols=117 Identities=13% Similarity=0.206 Sum_probs=105.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCC--EEEEECCHHHHHHHhhcC----CCCeeEEEEecCCCCCCCHHHHHHHcC--
Q 008619 16 KGLRVLLLDQDSSAAAELKFKLEAMDY--IVSTFYNENEALSAFSDK----PENFHVAIVEVTTSNTDGSFKFLETAK-- 87 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy--~V~ta~~~~eAL~~Lre~----~~~pDLVIvDv~MPd~mdG~eLLe~Ir-- 87 (559)
..++||||||++..+..+..+|+..|| .|..+.++.+|++.+++. ...||+||+|+.|++ ++|+++++.++
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~-~~g~~~~~~l~~~ 84 (143)
T 2qvg_A 6 DKVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINIPK-MNGIEFLKELRDD 84 (143)
T ss_dssp -CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTT-SCHHHHHHHHTTS
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecCCCC-CCHHHHHHHHHcC
Confidence 357999999999999999999999888 899999999999999851 146999999999999 99999999986
Q ss_pred ----CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008619 88 ----DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 88 ----diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
++|||++|+..+.+...++++.||++||.||++.++|..++.....
T Consensus 85 ~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~~~~ 134 (143)
T 2qvg_A 85 SSFTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWILQS 134 (143)
T ss_dssp GGGTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred ccccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999776543
No 89
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=99.72 E-value=1.3e-16 Score=140.07 Aligned_cols=117 Identities=11% Similarity=0.240 Sum_probs=104.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCc
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAM-DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLP 90 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~-gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diP 90 (559)
+++||||||++..+..+..+|+.. +|.++ .+.++.+|++.+.. ..||+||+|+.|++ ++|+++++.++ .++
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~--~~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~~ 85 (143)
T 2qv0_A 9 KMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQH--NKVDAIFLDINIPS-LDGVLLAQNISQFAHKPF 85 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHH--CCCSEEEECSSCSS-SCHHHHHHHHTTSTTCCE
T ss_pred ceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh--CCCCEEEEecCCCC-CCHHHHHHHHHccCCCce
Confidence 479999999999999999999875 89855 89999999999998 77999999999999 99999999997 467
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHhc
Q 008619 91 TIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNA 138 (559)
Q Consensus 91 VImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~~~ 138 (559)
||++|+..+ ...++++.||++||.||++.++|..++++++++..+.
T Consensus 86 ii~~s~~~~--~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~~ 131 (143)
T 2qv0_A 86 IVFITAWKE--HAVEAFELEAFDYILKPYQESRIINMLQKLTTAWEQQ 131 (143)
T ss_dssp EEEEESCCT--THHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHHC
T ss_pred EEEEeCCHH--HHHHHHhCCcceEEeCCCCHHHHHHHHHHHHHHHHhc
Confidence 889988744 5778999999999999999999999999998876543
No 90
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=99.72 E-value=1.6e-17 Score=172.50 Aligned_cols=116 Identities=22% Similarity=0.370 Sum_probs=106.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcEE
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTI 92 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPVI 92 (559)
+++||||||++..+..|+.+|+..||+|.++.++.+|++.+.+ ..|||||+|+.||+ ++|+++++.++ ++|||
T Consensus 5 ~~~iLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~--~~~dlvllD~~mp~-~~G~~~~~~lr~~~~~~pii 81 (394)
T 3eq2_A 5 SATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFES--EQPDLVICDLRMPQ-IDGLELIRRIRQTASETPII 81 (394)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHHH--SCCSEEEECCCSSS-SCTHHHHHHHHHTTCCCCEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhh--CCCCEEEEcCCCCC-CCHHHHHHHHHhhCCCCcEE
Confidence 4799999999999999999999999999999999999999998 78999999999999 99999999986 69999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHHH
Q 008619 93 ITSNIHCLSTMMKCIALGAVEFLRKPL-SEDKLRNLWQHVVHKA 135 (559)
Q Consensus 93 mLSa~~d~e~v~kAi~~GA~DYLvKPi-s~eeL~~iIq~vlrr~ 135 (559)
++|+..+.+.+.++++.||+|||.||+ +.++|..+|++++++.
T Consensus 82 ~lt~~~~~~~~~~a~~~ga~~yl~KP~~~~~~l~~~i~~~~~~~ 125 (394)
T 3eq2_A 82 VLSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRALDRA 125 (394)
T ss_dssp EC---CHHHHHHHHHHHTCSEECCSSCSCTHHHHHHHHHHHHHH
T ss_pred EEEcCCCHHHHHHHHhcChhhEEECCCChHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999 6899999999888764
No 91
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.71 E-value=6.7e-17 Score=169.84 Aligned_cols=115 Identities=18% Similarity=0.315 Sum_probs=109.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcEEE
Q 008619 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTII 93 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPVIm 93 (559)
++|||||||+..+..+..+|+..||.|.++.++.+|++.+.+ ..||+||+|+.||+ ++|+++++.++ ++|||+
T Consensus 1 m~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~--~~~DlvllD~~mp~-~dG~ell~~lr~~~~~~pvIv 77 (387)
T 1ny5_A 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSE--KHFNVVLLDLLLPD-VNGLEILKWIKERSPETEVIV 77 (387)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHH--SCCSEEEEESBCSS-SBHHHHHHHHHHHCTTSEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCC-CCHHHHHHHHHhhCCCCcEEE
Confidence 589999999999999999999889999999999999999998 78999999999999 99999999986 699999
Q ss_pred EecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008619 94 TSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (559)
Q Consensus 94 LSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~ 135 (559)
+|++.+.+.+.++++.||+|||.||++.++|..+|+++++..
T Consensus 78 lT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~ 119 (387)
T 1ny5_A 78 ITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHR 119 (387)
T ss_dssp EEETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHhcCceEEecCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988653
No 92
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.71 E-value=8.2e-17 Score=169.75 Aligned_cols=115 Identities=21% Similarity=0.291 Sum_probs=108.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC------CCcE
Q 008619 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DLPT 91 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir------diPV 91 (559)
.+||||||++..+..|..+|+..||.|.++.++.+|++.+.. ..|||||+|+.||+ ++|+++++.++ ++||
T Consensus 2 ~~iLivdD~~~~~~~l~~~L~~~~~~v~~a~~~~~al~~~~~--~~~dlvllD~~mp~-~~G~~~~~~l~~~~~~~~~pi 78 (459)
T 1w25_A 2 ARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAAR--DLPDIILLDVMMPG-MDGFTVCRKLKDDPTTRHIPV 78 (459)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--HCCSEEEEESCCSS-SCHHHHHHHHHHSTTTTTSCE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEEcCCCCC-CCHHHHHHHHhcCcccCCCCE
Confidence 589999999999999999999999999999999999999988 67999999999999 99999999885 5899
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008619 92 IITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (559)
Q Consensus 92 ImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~ 135 (559)
|++|+..+.+.+.++++.||++||.||++.++|..+|+.+++..
T Consensus 79 i~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~l~~~i~~~~~~~ 122 (459)
T 1w25_A 79 VLITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRFK 122 (459)
T ss_dssp EEEECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999888654
No 93
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=99.70 E-value=4.3e-18 Score=162.70 Aligned_cols=146 Identities=13% Similarity=0.109 Sum_probs=118.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhh-CCCEEEE-ECCHHHHHH-HhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-----
Q 008619 16 KGLRVLLLDQDSSAAAELKFKLEA-MDYIVST-FYNENEALS-AFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----- 87 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~-~gy~V~t-a~~~~eAL~-~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----- 87 (559)
.+++|||||||+..+..|+.+|+. .||.|+. +.++.+++. .+.. ..||+||+|+.||+ ++|+++++.++
T Consensus 6 ~~~~IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~~~~~~~~~~~~~--~~~dlvllD~~mp~-~~G~~~~~~lr~~~~~ 82 (225)
T 3klo_A 6 NKLNVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEENKPES--RSIQMLVIDYSRIS-DDVLTDYSSFKHISCP 82 (225)
T ss_dssp SSEEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGGGHHHHTTCSGG--GGCCEEEEEGGGCC-HHHHHHHHHHHHHHCT
T ss_pred CceEEEEEcCcHHHHHHHHHHHhhCCCceEEEEeCCcHHHHHHHhhc--cCCCEEEEeCCCCC-CCHHHHHHHHHHhhCC
Confidence 358999999999999999999984 6899864 456666665 4566 68999999999999 99999998774
Q ss_pred CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHhc--------------CC----CCccCCCcH
Q 008619 88 DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNA--------------GG----SALSDSLKP 149 (559)
Q Consensus 88 diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~~~--------------~~----~~~s~~Lt~ 149 (559)
++|||++|+..+.+....+++.||++||.||++.++|..+|+.++++.... .. ......|++
T Consensus 83 ~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~ 162 (225)
T 3klo_A 83 DAKEVIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQDEMWLTRKLAQEYILHYRAGNSVVTSQMYAKLTK 162 (225)
T ss_dssp TCEEEEEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHTTCCBCCHHHHHHHHHHHHTTCCCCCCHHHHTSCH
T ss_pred CCcEEEEECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHHCCCEeeCHHHHHHHHHHhhcccccccccccccCCH
Confidence 699999999999889999999999999999999999999999887642100 00 001235889
Q ss_pred HHHHHHHHHhhhhcc
Q 008619 150 VKESVVSMLHLKLEN 164 (559)
Q Consensus 150 re~eVl~li~~~~~~ 164 (559)
+|.+++.++..+..+
T Consensus 163 rE~~vL~~l~~g~s~ 177 (225)
T 3klo_A 163 REQQIIKLLGSGASN 177 (225)
T ss_dssp HHHHHHHHHTTTCCH
T ss_pred HHHHHHHHHHcCCCH
Confidence 999999888765433
No 94
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=99.70 E-value=1.9e-16 Score=138.25 Aligned_cols=114 Identities=16% Similarity=0.269 Sum_probs=105.6
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CC
Q 008619 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DL 89 (559)
Q Consensus 14 ~p~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----di 89 (559)
...+.+|||||||+..+..|..+|+..||+|..+.++.+|+..+.. ..||+|| |++ ++|+++++.++ .+
T Consensus 15 ~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--~~~dlvi----~~~-~~g~~~~~~l~~~~~~~ 87 (137)
T 2pln_A 15 PRGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDI--RNYDLVM----VSD-KNALSFVSRIKEKHSSI 87 (137)
T ss_dssp CTTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHH--SCCSEEE----ECS-TTHHHHHHHHHHHSTTS
T ss_pred CCCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHHc--CCCCEEE----EcC-ccHHHHHHHHHhcCCCc
Confidence 3456899999999999999999999999999999999999999998 7899999 899 99999998884 79
Q ss_pred cEEEEecCCCHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHH
Q 008619 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPL-SEDKLRNLWQHVVHK 134 (559)
Q Consensus 90 PVImLSa~~d~e~v~kAi~~GA~DYLvKPi-s~eeL~~iIq~vlrr 134 (559)
|||++|+..+.+...++++.||++||.||+ +.++|..+++.++++
T Consensus 88 ~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~ 133 (137)
T 2pln_A 88 VVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRF 133 (137)
T ss_dssp EEEEEESSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHTC-
T ss_pred cEEEEeCCCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999 999999999888754
No 95
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=99.70 E-value=4e-17 Score=145.36 Aligned_cols=117 Identities=16% Similarity=0.122 Sum_probs=96.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhC-CC-EEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CC
Q 008619 16 KGLRVLLLDQDSSAAAELKFKLEAM-DY-IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DL 89 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~-gy-~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----di 89 (559)
.+++||||||++..+..|..+|+.. || .|..+.++.+|++.+.+. ..||+||+|+.|++ ++|+++++.++ .+
T Consensus 2 ~~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~-~~~dlvi~d~~l~~-~~g~~~~~~l~~~~~~~ 79 (154)
T 2qsj_A 2 SLTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEAD-NTVDLILLDVNLPD-AEAIDGLVRLKRFDPSN 79 (154)
T ss_dssp -CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTT-CCCSEEEECC-------CHHHHHHHHHHCTTS
T ss_pred CccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhcc-CCCCEEEEeCCCCC-CchHHHHHHHHHhCCCC
Confidence 3579999999999999999999987 88 677999999999999872 36999999999999 99999999886 69
Q ss_pred cEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008619 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 90 PVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
|||++|+..+.+.+.++++.||++||.||++.++|..+++.++++
T Consensus 80 ~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~ 124 (154)
T 2qsj_A 80 AVALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEG 124 (154)
T ss_dssp EEEEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcC
Confidence 999999999989999999999999999999999999999888754
No 96
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=99.70 E-value=1.8e-16 Score=136.65 Aligned_cols=116 Identities=12% Similarity=0.261 Sum_probs=104.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCC-CeeEEEEecCCCCCCCHHHHHHHcC----CCc
Q 008619 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPE-NFHVAIVEVTTSNTDGSFKFLETAK----DLP 90 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~-~pDLVIvDv~MPd~mdG~eLLe~Ir----diP 90 (559)
.+++||||||++..+..+..+|...||+|..+.++.+|++.+.+ . .||+||+|+.|++.++|+++++.++ .+|
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ 81 (132)
T 2rdm_A 4 EAVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKS--GAAIDGVVTDIRFCQPPDGWQVARVAREIDPNMP 81 (132)
T ss_dssp SSCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHT--TCCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCC
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHc--CCCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCC
Confidence 45799999999999999999999999999999999999999998 6 7999999999993179999999886 699
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008619 91 TIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (559)
Q Consensus 91 VImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~ 135 (559)
||++|+..+.+....++..| +||.||++.++|..+++++++..
T Consensus 82 ii~~s~~~~~~~~~~~~~~~--~~l~kP~~~~~l~~~i~~~~~~~ 124 (132)
T 2rdm_A 82 IVYISGHAALEWASNGVPDS--IILEKPFTSAQLITAVSQLLNAR 124 (132)
T ss_dssp EEEEESSCCTTHHHHSCTTC--EEEESSCCHHHHHHHHHHHHHTT
T ss_pred EEEEeCCccHHHHHhhcCCc--ceEeCCCCHHHHHHHHHHHHhcC
Confidence 99999999888888887776 89999999999999998887653
No 97
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=99.69 E-value=6.6e-17 Score=142.85 Aligned_cols=112 Identities=17% Similarity=0.211 Sum_probs=95.0
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHHHhhcCCC-CeeEEEEecCCCCCCCHHHHHHHcC---C
Q 008619 15 PKGLRVLLLDQDSSAAAELKFKLEAM-DYIVS-TFYNENEALSAFSDKPE-NFHVAIVEVTTSNTDGSFKFLETAK---D 88 (559)
Q Consensus 15 p~glrVLIVDDD~~~~~~L~~~L~~~-gy~V~-ta~~~~eAL~~Lre~~~-~pDLVIvDv~MPd~mdG~eLLe~Ir---d 88 (559)
+...+||||||++..+..|+.+|+.. ||.++ .+.++.+|++.+.+ . .||+||+|+.||+ ++|+++++.++ .
T Consensus 11 ~~~~~vlivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~--~~~~dlvilD~~l~~-~~g~~~~~~lr~~~~ 87 (145)
T 3kyj_B 11 GSPYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAA--QPNVDLILLDIEMPV-MDGMEFLRHAKLKTR 87 (145)
T ss_dssp CCSEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHH--CTTCCEEEECTTSCC-CTTCHHHHHHHHHCC
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHhc--CCCCCEEEEeCCCCC-CCHHHHHHHHHhcCC
Confidence 45679999999999999999999988 89876 99999999999998 6 7999999999999 99999999886 6
Q ss_pred CcEEEEec--CCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Q 008619 89 LPTIITSN--IHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQ 129 (559)
Q Consensus 89 iPVImLSa--~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq 129 (559)
.|+|+++. ..+.+.+.++++.||++||.||++.++|..+++
T Consensus 88 ~~iiil~~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~ 130 (145)
T 3kyj_B 88 AKICMLSSVAVSGSPHAARARELGADGVVAKPSGTVSHDLEEK 130 (145)
T ss_dssp CEEC-CBSSCSTTSSHHHHHHHTTCSCCCBCCCSCC------C
T ss_pred CCeEEEEEeccCChHHHHHHHhCCCCEEEeCCCCHHHHHHHHH
Confidence 89999987 666677889999999999999999777666543
No 98
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=99.69 E-value=8.8e-17 Score=141.23 Aligned_cols=114 Identities=17% Similarity=0.206 Sum_probs=99.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC---------
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--------- 87 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir--------- 87 (559)
.++||||||++..+..+..+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++
T Consensus 10 ~~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~~--~~~dlvllD~~lp~-~~g~~~~~~l~~~~~~~~~~ 86 (140)
T 3c97_A 10 PLSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQN--RQFDVIIMDIQMPV-MDGLEAVSEIRNYERTHNTK 86 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHHH--SCCSEEEECTTCCS-SCHHHHHHHHHHHHHHHTCC
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHhc--CCCCEEEEeCCCCC-CcHHHHHHHHHhhhhhcCCC
Confidence 3699999999999999999999999999999999999999998 78999999999999 99999998874
Q ss_pred CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008619 88 DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 136 (559)
Q Consensus 88 diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~ 136 (559)
.+|||++|+........ ..||++||.||++.++|..+++.++++..
T Consensus 87 ~~~ii~~s~~~~~~~~~---~~g~~~~l~KP~~~~~L~~~i~~~~~~~~ 132 (140)
T 3c97_A 87 RASIIAITADTIDDDRP---GAELDEYVSKPLNPNQLRDVVLTCHSEGA 132 (140)
T ss_dssp CCCCEEEESSCCSCCCC---CSSCSEEEESSCCHHHHHHHHHHHHC---
T ss_pred ceEEEEEeCccchhHHH---hCChhheEeCCCCHHHHHHHHHHHhCCCC
Confidence 47899999876544332 78999999999999999999998876543
No 99
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=99.68 E-value=2.9e-16 Score=142.89 Aligned_cols=114 Identities=18% Similarity=0.211 Sum_probs=97.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCC-CEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC---CCc
Q 008619 16 KGLRVLLLDQDSSAAAELKFKLEAMD-YIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLP 90 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~g-y~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir---diP 90 (559)
.+++|||||||+..+..|+.+|+..+ +.++ .+.++.+|++.+.+ ..||+||+|+.||+ ++|+++++.++ .+|
T Consensus 24 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~--~~~dlvilD~~l~~-~~g~~l~~~lr~~~~~~ 100 (164)
T 3t8y_A 24 RVIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIE--LKPDVITMDIEMPN-LNGIEALKLIMKKAPTR 100 (164)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHH--HCCSEEEECSSCSS-SCHHHHHHHHHHHSCCE
T ss_pred CccEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhcc--CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCce
Confidence 46899999999999999999999874 4444 89999999999998 67999999999999 99999999886 589
Q ss_pred EEEEecCCCHH--HHHHHHHcCCCEEEeCCCC---------HHHHHHHHHHHH
Q 008619 91 TIITSNIHCLS--TMMKCIALGAVEFLRKPLS---------EDKLRNLWQHVV 132 (559)
Q Consensus 91 VImLSa~~d~e--~v~kAi~~GA~DYLvKPis---------~eeL~~iIq~vl 132 (559)
||++|+..+.. .+.++++.||++||.||++ .++|..+++.++
T Consensus 101 ii~~s~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~r~~~~~l~~~i~~~~ 153 (164)
T 3t8y_A 101 VIMVSSLTEEGAAITIEALRNGAVDFITKPHGSISLTFRQVAPELLEKIRQAM 153 (164)
T ss_dssp EEEEESSCCTTCHHHHHHHHTTCCEEEECSSSSSCGGGGGGHHHHHHHHHHHT
T ss_pred EEEEecCCccchHHHHHHHHcCcCEEEeCCCCHHHHHHHhhhHHHHHHHHHHh
Confidence 99999976643 7789999999999999999 455555554444
No 100
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=99.68 E-value=8.7e-17 Score=152.58 Aligned_cols=137 Identities=16% Similarity=0.239 Sum_probs=119.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcEEE
Q 008619 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTII 93 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPVIm 93 (559)
|+|||||||+..+..|..+|...||.|..+.++.+|++.+.. ..||+|| ||+ ++|+++++.++ ++|||+
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--~~~dlvi----lp~-~~g~~~~~~lr~~~~~~~ii~ 73 (223)
T 2hqr_A 1 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDI--RNYDLVM----VSD-KNALSFVSRIKEKHSSIVVLV 73 (223)
T ss_dssp CCEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHTT--SCCSEEE----ECC-TTHHHHHHHHHHHCTTSEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHhc--CCCCEEE----eCC-CCHHHHHHHHHhCCCCCcEEE
Confidence 479999999999999999999999999999999999999988 7899999 999 99999998885 799999
Q ss_pred EecCCCHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHHH--H--hcCC------C------CccCCCcHHHHHHHH
Q 008619 94 TSNIHCLSTMMKCIALGAVEFLRKPL-SEDKLRNLWQHVVHKA--F--NAGG------S------ALSDSLKPVKESVVS 156 (559)
Q Consensus 94 LSa~~d~e~v~kAi~~GA~DYLvKPi-s~eeL~~iIq~vlrr~--~--~~~~------~------~~s~~Lt~re~eVl~ 156 (559)
+|+..+.+.+.++++.||++||.||+ +.++|..+++.++++. . .... . .....|+++|.+++.
T Consensus 74 lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~~vL~ 153 (223)
T 2hqr_A 74 SSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFWGSNVIEIGDLTISPDEEKIIYKGREVEVKGKPFEVLT 153 (223)
T ss_dssp EESSCCHHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSSCCCCSEEETTEEEETTTTEEEETTEEECCCSTTTHHHH
T ss_pred EECCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHhccccCCeEEECCEEEecccCEEEECCEEEecCHHHHHHHH
Confidence 99999999999999999999999999 9999999999988764 1 0000 0 001248899999999
Q ss_pred HHhhh
Q 008619 157 MLHLK 161 (559)
Q Consensus 157 li~~~ 161 (559)
++..+
T Consensus 154 ~l~~~ 158 (223)
T 2hqr_A 154 HLARH 158 (223)
T ss_dssp HHHHT
T ss_pred HHHhC
Confidence 88776
No 101
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=99.68 E-value=2.3e-16 Score=160.30 Aligned_cols=114 Identities=16% Similarity=0.175 Sum_probs=106.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhh-CCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC------CC
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEA-MDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DL 89 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~-~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir------di 89 (559)
..+||||||++..+..|..+|.. .||.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ ++
T Consensus 18 ~~~ilivdD~~~~~~~l~~~l~~~~~~~v~~~~~~~~al~~~~~--~~~dlvl~D~~mp~-~~G~~~~~~l~~~~~~~~~ 94 (358)
T 3bre_A 18 AVMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVANQ--IKPTVILQDLVMPG-VDGLTLLAAYRGNPATRDI 94 (358)
T ss_dssp CEEEEEECSCTTHHHHHHTTSSSCTTEEEEEECCHHHHHHHHHH--HCCSEEEEESBCSS-SBHHHHHHHHTTSTTTTTS
T ss_pred CceEEEEECCHHHHHHHHHHHHhccCcEEEEeCCHHHHHHHHHh--CCCCEEEEeCCCCC-CCHHHHHHHHhcCcccCCC
Confidence 36799999999999999999974 59999999999999999988 78999999999999 99999999986 48
Q ss_pred cEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008619 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 90 PVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
|||++|+..+.+.+.++++.||+|||.||++.++|..+++.+++
T Consensus 95 ~ii~~s~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~l~~~v~~~~~ 138 (358)
T 3bre_A 95 PIIVLSTKEEPTVKSAAFAAGANDYLVKLPDAIELVARIRYHSR 138 (358)
T ss_dssp CEEEEESSCCHHHHHHHHHTTCSEEEESCCCHHHHHHHHHHHHH
T ss_pred cEEEEeCCCCHHHHHHHHhcChheEeeccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987754
No 102
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=99.67 E-value=1.5e-16 Score=132.80 Aligned_cols=109 Identities=18% Similarity=0.200 Sum_probs=100.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC------CCcE
Q 008619 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DLPT 91 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir------diPV 91 (559)
.+||||||++..+..+..+|+..||+|..+.++.+|++.+.+ ..||+||+|+.|++ ++|+++++.++ .+||
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~--~~~dlii~d~~~~~-~~~~~~~~~l~~~~~~~~~~i 78 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDL--LQPIVILMAWPPPD-QSCLLLLQHLREHQADPHPPL 78 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHH--HCCSEEEEECSTTC-CTHHHHHHHHHHTCCCSSCCC
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHh--cCCCEEEEecCCCC-CCHHHHHHHHHhccccCCCCE
Confidence 589999999999999999999999999999999999999998 68999999999999 99999998884 5899
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 008619 92 IITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVV 132 (559)
Q Consensus 92 ImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vl 132 (559)
|++|+..+.. .++..|+++||.||++.++|..++++++
T Consensus 79 i~~~~~~~~~---~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 79 VLFLGEPPVD---PLLTAQASAILSKPLDPQLLLTTLQGLC 116 (119)
T ss_dssp EEEESSCCSS---HHHHHHCSEECSSCSTTHHHHHHHHTTC
T ss_pred EEEeCCCCch---hhhhcCHHHhccCCCCHHHHHHHHHHHh
Confidence 9999987766 8999999999999999999999887654
No 103
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=99.67 E-value=2.8e-18 Score=145.82 Aligned_cols=115 Identities=25% Similarity=0.332 Sum_probs=106.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcEE
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTI 92 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPVI 92 (559)
..+||||||++..+..+..+|...||.|..+.++.+|++.+.. ..||+||+|+.|++ ++|+++++.++ .+|||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~-~~g~~~~~~l~~~~~~~~ii 79 (124)
T 1dc7_A 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALAS--KTPDVLLSDIRMPG-MDGLALLKQIKQRHPMLPVI 79 (124)
T ss_dssp CCCCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSSS--CCCSCEEECSCSSH-HHHCSTHHHHHHHCTTSCCC
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhc--CCCCEEEEeeecCC-CCHHHHHHHHHhhCCCCCEE
Confidence 4689999999999999999999999999999999999999988 78999999999999 99998888875 69999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008619 93 ITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 93 mLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
++|+..+.+...++++.||++||.||++.++|..+++.++++
T Consensus 80 ~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 121 (124)
T 1dc7_A 80 IMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 (124)
T ss_dssp CBCCSTTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHhcCcceEeeCCCCHHHHHHHHHHHHHh
Confidence 999998888888999999999999999999999999888764
No 104
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=99.65 E-value=2.1e-16 Score=165.51 Aligned_cols=119 Identities=19% Similarity=0.289 Sum_probs=105.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhh-CCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCc
Q 008619 16 KGLRVLLLDQDSSAAAELKFKLEA-MDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLP 90 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~-~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diP 90 (559)
.+++|||||||+..+..+..+|+. .+|.|.++.++.+|++.+.+. ..|||||+|+.||+ ++|+++++.++ .++
T Consensus 2 ~~~~ILivDD~~~~~~~l~~~L~~~~~~~v~~a~~g~eal~~l~~~-~~~DlvllDi~mP~-~dG~ell~~l~~~~~~~~ 79 (400)
T 3sy8_A 2 NDLNVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILESC-GHVDIAICDLQMSG-MDGLAFLRHASLSGKVHS 79 (400)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHHHHCSEEEEEESSHHHHHHHHHHH-SCEEEEEECSSCSS-SCHHHHHHHHHHHTCEEE
T ss_pred CCceEEEEcCCHHHHHHHHHHHHhcCCcEEEEecCHHHHHHHHhhC-CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCce
Confidence 357999999999999999999998 589999999999999999871 26999999999999 99999999986 467
Q ss_pred EEEEecCCCH-----HHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008619 91 TIITSNIHCL-----STMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 136 (559)
Q Consensus 91 VImLSa~~d~-----e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~ 136 (559)
||++|+.++. ..+.+++..||++||.||++.++|..++++++++..
T Consensus 80 ii~~s~~~~~~~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~i~~~~~~~~ 130 (400)
T 3sy8_A 80 VILSSEVDPILRQATISMIECLGLNFLGDLGKPFSLERITALLTRYNARRQ 130 (400)
T ss_dssp EEESCCCCGGGHHHHHHHHHTTTCEEEEECCSSCCHHHHHHHHHHHHHHTT
T ss_pred EEEEcCchHHHHHHHHHHHHHcCCeeccCcCCCcCHHHHHHHHHHHHHhhh
Confidence 7777777766 677889999999999999999999999999887643
No 105
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=99.63 E-value=3.7e-16 Score=145.65 Aligned_cols=112 Identities=13% Similarity=0.188 Sum_probs=101.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcE
Q 008619 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPT 91 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPV 91 (559)
.+++||||||++..+..+..+|...||.|+.+.++.+|+ . ..||+||+|+.||+ ++|+ +++.++ ++||
T Consensus 11 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al----~--~~~dlvl~D~~mp~-~~g~-l~~~~~~~~~~~~i 82 (196)
T 1qo0_D 11 RELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAF----D--VPVDVVFTSIFQNR-HHDE-IAALLAAGTPRTTL 82 (196)
T ss_dssp GGCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSC----S--SCCSEEEEECCSST-HHHH-HHHHHHHSCTTCEE
T ss_pred cCCeEEEEcCChhHHHHHHHHHHHcCCeEEEecCchhhC----C--CCCCEEEEeCCCCc-cchH-HHHHHhccCCCCCE
Confidence 357999999999999999999998899999888877766 3 57999999999999 9998 777663 6999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008619 92 IITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (559)
Q Consensus 92 ImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~ 135 (559)
|++|+..+.+.+.++++.||++||.||++.++|..+++.++++.
T Consensus 83 i~lt~~~~~~~~~~a~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 126 (196)
T 1qo0_D 83 VALVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARRIS 126 (196)
T ss_dssp EEEECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHHHHH
T ss_pred EEEEcCCChHHHHHHHHcCCCeeEecCcCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999888654
No 106
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=99.62 E-value=5.4e-16 Score=135.57 Aligned_cols=115 Identities=18% Similarity=0.229 Sum_probs=99.2
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CC
Q 008619 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DL 89 (559)
Q Consensus 14 ~p~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----di 89 (559)
.+.+.+||||||++..+..+..+|+..||+|..+.++.+|++.+.+. ..||+||+|+.|++ ++|+++++.++ ++
T Consensus 12 ~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~-~~~dlvilD~~l~~-~~g~~~~~~l~~~~~~~ 89 (138)
T 2b4a_A 12 HMQPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQL-STCDLLIVSDQLVD-LSIFSLLDIVKEQTKQP 89 (138)
T ss_dssp --CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGG-GSCSEEEEETTCTT-SCHHHHHHHHTTSSSCC
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhC-CCCCEEEEeCCCCC-CCHHHHHHHHHhhCCCC
Confidence 45678999999999999999999999999999999999999988761 25999999999999 99999999996 69
Q ss_pred cEEEEe-cCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008619 90 PTIITS-NIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 90 PVImLS-a~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
|||++| +..+.+. .+++ |++||.||++.++|..+++.++++
T Consensus 90 ~ii~ls~~~~~~~~-~~~~---~~~~l~KP~~~~~L~~~i~~~~~~ 131 (138)
T 2b4a_A 90 SVLILTTGRHELIE-SSEH---NLSYLQKPFAISELRAAIDYHKPS 131 (138)
T ss_dssp EEEEEESCC--CCC-CSSS---CEEEEESSCCHHHHHHHHHHTCCC
T ss_pred CEEEEECCCCCHHH-HHHH---HHheeeCCCCHHHHHHHHHHHHHh
Confidence 999999 8776655 5665 999999999999999998876643
No 107
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=99.59 E-value=1e-14 Score=151.66 Aligned_cols=115 Identities=18% Similarity=0.271 Sum_probs=101.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhC-CCEE-EEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC---CCc
Q 008619 16 KGLRVLLLDQDSSAAAELKFKLEAM-DYIV-STFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLP 90 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~-gy~V-~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir---diP 90 (559)
.+++||||||++..+..|..+|+.. +|++ .++.++.+|++.+.+ ..||+||+|+.||+ ++|+++++.++ .+|
T Consensus 2 ~~~rVLIVDD~~~~r~~L~~~L~~~~g~~vv~~a~~~~eAl~~l~~--~~pDlVllDi~mp~-~dGlell~~l~~~~p~p 78 (349)
T 1a2o_A 2 SKIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKK--FNPDVLTLDVEMPR-MDGLDFLEKLMRLRPMP 78 (349)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHH--HCCSEEEEECCCSS-SCHHHHHHHHHHSSCCC
T ss_pred CCCEEEEEECCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHhc--cCCCEEEEECCCCC-CCHHHHHHHHHhcCCCc
Confidence 3589999999999999999999986 8995 599999999999998 67999999999999 99999999986 599
Q ss_pred EEEEecCCCH--HHHHHHHHcCCCEEEeCCCCH---------HHHHHHHHHHHH
Q 008619 91 TIITSNIHCL--STMMKCIALGAVEFLRKPLSE---------DKLRNLWQHVVH 133 (559)
Q Consensus 91 VImLSa~~d~--e~v~kAi~~GA~DYLvKPis~---------eeL~~iIq~vlr 133 (559)
||++|+..+. +...++++.||+|||.||++. ++|...|+.+.+
T Consensus 79 VIvlS~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~l~~~~~~L~~~I~~~~~ 132 (349)
T 1a2o_A 79 VVMVSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYSEMIAEKVRTAAR 132 (349)
T ss_dssp EEEEECCTHHHHHHHHHHHHHTCCEEEECSSSSCSSCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCcccHHHHHHHHhCCceEEEECCCCccchhHHHHHHHHHHHHHHHHh
Confidence 9999998775 458899999999999999983 666666666554
No 108
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.58 E-value=2.9e-15 Score=148.03 Aligned_cols=101 Identities=14% Similarity=0.221 Sum_probs=87.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhC-CCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC--CCcEEE
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAM-DYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTII 93 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~-gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir--diPVIm 93 (559)
+.+||||||++.++..|...|... ||.|..+ ++.+++..+.. ..||+||+|+.||+ ++|+++++.++ .+|||+
T Consensus 4 ~~~ILiVdD~~~~~~~l~~~L~~~~~~~v~~~-~~~~~~~~~~~--~~~dlvllD~~mP~-~~G~~~~~~lr~~~~pvi~ 79 (259)
T 3luf_A 4 KQKILIVEDSMTIRRMLIQAIAQQTGLEIDAF-DTLEGARHCQG--DEYVVALVDLTLPD-APSGEAVKVLLERGLPVVI 79 (259)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHHHHCCEEEEE-SSTGGGTTCCT--TTEEEEEEESCBTT-BTTSHHHHHHHHTTCCEEE
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCCeEEEEe-ChHHHHHHhhc--CCCcEEEEeCCCCC-CCHHHHHHHHHhCCCCEEE
Confidence 368999999999999999999764 7887655 45566666655 68999999999999 99999999986 799999
Q ss_pred EecCCCHHHHHHHHHcCCCEEEeCCCCH
Q 008619 94 TSNIHCLSTMMKCIALGAVEFLRKPLSE 121 (559)
Q Consensus 94 LSa~~d~e~v~kAi~~GA~DYLvKPis~ 121 (559)
+|+..+.+...+++++||+|||.||+..
T Consensus 80 lt~~~~~~~~~~a~~~Ga~dyl~Kp~~~ 107 (259)
T 3luf_A 80 LTADISEDKREAWLEAGVLDYVMKDSRH 107 (259)
T ss_dssp EECC-CHHHHHHHHHTTCCEEEECSSHH
T ss_pred EEccCCHHHHHHHHHCCCcEEEeCCchh
Confidence 9999999999999999999999999754
No 109
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.48 E-value=3.2e-14 Score=161.61 Aligned_cols=117 Identities=9% Similarity=0.112 Sum_probs=106.7
Q ss_pred cEEEEEeCCH-HH-------HHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCC-CeeEEEEecCCCC---CCCHHHHHHH
Q 008619 18 LRVLLLDQDS-SA-------AAELKFKLEAMDYIVSTFYNENEALSAFSDKPE-NFHVAIVEVTTSN---TDGSFKFLET 85 (559)
Q Consensus 18 lrVLIVDDD~-~~-------~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~-~pDLVIvDv~MPd---~mdG~eLLe~ 85 (559)
|+|||||||. .+ ++.|+..|+..||+|..+.++++|+..+++ + .+|+||+|+.||+ .++|+++++.
T Consensus 1 m~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~~~--~~~~d~vilDi~lp~~~~~~~G~~ll~~ 78 (755)
T 2vyc_A 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSS--NEAIDCLMFSYQMEHPDEHQNVRQLIGK 78 (755)
T ss_dssp CEEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTT--TCCCSEEEEECCCCSHHHHHHHHHHHHH
T ss_pred CeEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhc--CCCCcEEEEeCCCCcccccccHHHHHHH
Confidence 4899999999 88 999999999999999999999999999998 5 4999999999986 1689999999
Q ss_pred cC----CCcEEEEecCCC-HHHHHHHHHcCCCEEEeCCCCHHH-HHHHHHHHHHHHH
Q 008619 86 AK----DLPTIITSNIHC-LSTMMKCIALGAVEFLRKPLSEDK-LRNLWQHVVHKAF 136 (559)
Q Consensus 86 Ir----diPVImLSa~~d-~e~v~kAi~~GA~DYLvKPis~ee-L~~iIq~vlrr~~ 136 (559)
|| ++||||+|+..+ .+....++..||+|||.||++..+ |..+|+.++|+..
T Consensus 79 iR~~~~~iPIi~lTa~~~~~~d~~~~l~~gaddyi~kpf~~~efl~~ri~a~~rr~~ 135 (755)
T 2vyc_A 79 LHERQQNVPVFLLGDREKALAAMDRDLLELVDEFAWILEDTADFIAGRAVAAMTRYR 135 (755)
T ss_dssp HHHHSTTCCEEEEECHHHHHHTCSHHHHHHCSEEEETTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCEEEEecCCcchhhccHhHhhcCCceEeCCCCCHHHHHHHHHHHHHHhh
Confidence 96 699999999887 777889999999999999999999 8899999888753
No 110
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=98.89 E-value=3.2e-08 Score=104.12 Aligned_cols=114 Identities=18% Similarity=0.294 Sum_probs=98.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC------CCc
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DLP 90 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir------diP 90 (559)
..+|++|||+...+..+...|.. .+.+....+..+++. +.. ..||++++|+.||+ ++|+++++.++ .+|
T Consensus 152 ~~~ilivdd~~~~~~~i~~~L~~-~~~~~~~~~~~~~~~-~~~--~~~dlil~D~~mp~-~dG~~~~~~ir~~~~~~~~p 226 (459)
T 1w25_A 152 GGRVLIVDDNERQAQRVAAELGV-EHRPVIESDPEKAKI-SAG--GPVDLVIVNAAAKN-FDGLRFTAALRSEERTRQLP 226 (459)
T ss_dssp SCEEEEECSCHHHHHHHHHHHTT-TSEEEEECCHHHHHH-HHH--SSCSEEEEETTCSS-SCHHHHHHHHHTSGGGTTCC
T ss_pred CCeEEEECCchhhHHHHHHHHhc-ccceeeccCHHHHhh-hcc--CCCCEEEEecCCCC-CcHHHHHHHHHhCccccCCc
Confidence 46899999999888888888865 467778888888863 344 57999999999999 99999999885 699
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008619 91 TIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (559)
Q Consensus 91 VImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~ 135 (559)
||++|+..+......++..|++||+.||+..+++..++..++++.
T Consensus 227 ii~lt~~~~~~~~~~~l~~Ga~d~~~kp~~~~~l~~~v~~~~~~~ 271 (459)
T 1w25_A 227 VLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQRK 271 (459)
T ss_dssp EEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCchHHHHHHHhccccccccCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887776543
No 111
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=98.82 E-value=1.5e-09 Score=102.76 Aligned_cols=88 Identities=15% Similarity=0.244 Sum_probs=74.7
Q ss_pred CEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008619 42 YIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (559)
Q Consensus 42 y~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPVImLSa~~d~e~v~kAi~~GA~DYLvK 117 (559)
|.|..+.++.+|++.+.+ ..|||||+|+.||+ ++|+++++.++ ..++++++.....+.+.++++.||++||.|
T Consensus 6 ~~v~~~~~~~~a~~~~~~--~~~dlvl~D~~~p~-~~g~~~~~~l~~~~~~~~i~vi~~~~~~~~~~~~~~~Ga~~~l~k 82 (237)
T 3cwo_X 6 LIVDDATNGREAVEKYKE--LKPDIVTMDITMPE-MNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVN 82 (237)
T ss_dssp EEEECCCSSSTTHHHHHH--HCCSCEEEECCSTT-SSHHHHHHHHHHHSSSCCEEEECCSSTHHHHHHHHHTTCCEEEES
T ss_pred EEEEECCCHHHHHHHHHh--cCCCEEEEeCCCCC-CCHHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHCCHHheEeC
Confidence 556678899999999998 67999999999999 99999999975 466777777777889999999999999999
Q ss_pred C--CCHHHHHHHHHHHH
Q 008619 118 P--LSEDKLRNLWQHVV 132 (559)
Q Consensus 118 P--is~eeL~~iIq~vl 132 (559)
| ++..+|...+...+
T Consensus 83 p~~~~~~~l~~~i~~~~ 99 (237)
T 3cwo_X 83 TAAVENPSLITQIAQTF 99 (237)
T ss_dssp HHHHHCTHHHHHHHHHH
T ss_pred CcccChHHHHHHHHHHh
Confidence 9 67777777665544
No 112
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=97.12 E-value=0.00047 Score=67.22 Aligned_cols=96 Identities=16% Similarity=0.104 Sum_probs=70.1
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEEEE
Q 008619 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIIT 94 (559)
Q Consensus 15 p~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVImL 94 (559)
..+.+||||||+...+..|..+|...|++|+.+.+ ... ..+|++|+|+.+++ ..+. ..+|.+
T Consensus 9 l~~~~vlvv~d~~~~~~~l~~~L~~~g~~v~~~~~-------~~~--~~~~~ii~d~~~~~-~~~~--------~~~i~~ 70 (254)
T 2ayx_A 9 LSGKRCWLAVRNASLCQFLETSLQRSGIVVTTYEG-------QEP--TPEDVLITDEVVSK-KWQG--------RAVVTF 70 (254)
T ss_dssp TTTEEEEEECCCHHHHHHHHHHHTTTTEEEEECSS-------CCC--CTTCEEEEESSCSC-CCCS--------SEEEEE
T ss_pred cCCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEecC-------CCC--CcCcEEEEcCCCcc-cccc--------ceEEEE
Confidence 35689999999999999999999999999998775 122 57999999999998 5431 125556
Q ss_pred ecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 008619 95 SNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVV 132 (559)
Q Consensus 95 Sa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vl 132 (559)
+...... ....+...++.+|+...+|...+.+++
T Consensus 71 ~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~l~~~~ 104 (254)
T 2ayx_A 71 CRRHIGI----PLEKAPGEWVHSVAAPHELPALLARIY 104 (254)
T ss_dssp CSSCCCS----CCTTSTTEEEECSSCCSHHHHHHHHHH
T ss_pred ecccCCC----cccccCCceeccccchHHHHHHHHHHh
Confidence 5543210 012355689999999888777665544
No 113
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=96.60 E-value=0.001 Score=75.47 Aligned_cols=102 Identities=13% Similarity=0.164 Sum_probs=75.8
Q ss_pred HHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcEEEEecCCCHHHHH
Q 008619 29 AAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTIITSNIHCLSTMM 104 (559)
Q Consensus 29 ~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPVImLSa~~d~e~v~ 104 (559)
..+.|...|++.||+|+.+.+.++|+..++++ ..+++||+|+.++ +.++++.|+ ++||++++...+...+.
T Consensus 18 ~i~~L~~~Le~~g~~V~~a~s~~Da~~~i~~~-~~i~avIld~d~~----~~~ll~~Ir~~~~~iPVFl~~~~~~~~~~~ 92 (715)
T 3n75_A 18 PIRELHRALERLNFQIVYPNDRDDLLKLIENN-ARLCGVIFDWDKY----NLELCEEISKMNENLPLYAFANTYSTLDVS 92 (715)
T ss_dssp HHHHHHHHHHHTTCEEECCSSHHHHHHHHHHC-TTEEEEEEEHHHH----HHHHHHHHHHHCTTCEEEEECCTTCCCCGG
T ss_pred HHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhC-CCceEEEEecccc----HHHHHHHHHHhCCCCCEEEEecCCcccccc
Confidence 34567788889999999999999999999984 4699999999764 567777775 79999999886533332
Q ss_pred HHHHcCCCEEEeCCCC-HHHHHHHHHHHHHHH
Q 008619 105 KCIALGAVEFLRKPLS-EDKLRNLWQHVVHKA 135 (559)
Q Consensus 105 kAi~~GA~DYLvKPis-~eeL~~iIq~vlrr~ 135 (559)
...-.++++|+-+..+ .+.+...|...+++.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 124 (715)
T 3n75_A 93 LNDLRLQISFFEYALGAAEDIANKIKQTTDEY 124 (715)
T ss_dssp GTTSCCEEEEECCCTTCHHHHHHHHHHHHHHH
T ss_pred hhhhhccCeEEEeCCCCHHHHHHHHHHHHHHH
Confidence 2224578999998774 455555565555543
No 114
>3q7r_A Transcriptional regulatory protein; CHXR, receiver domain, transcription factor, OMPR, chlamydia transcription; 1.60A {Chlamydia trachomatis} PDB: 3q7s_A* 3q7t_A
Probab=96.32 E-value=0.027 Score=49.23 Aligned_cols=100 Identities=12% Similarity=0.121 Sum_probs=79.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC------CCcE
Q 008619 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DLPT 91 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir------diPV 91 (559)
..||+|..|-.+.-.+++++....|+++...... .+ ..-|+|++++.+-. +.+. ..-+
T Consensus 13 ~~iL~VtEd~~ls~QlKel~~~~eY~~~is~~~~------~e--~~AdlIfCEYlLLP--------e~ifS~k~~~~~dl 76 (121)
T 3q7r_A 13 KHVLLVSEHWDLFFQTKELLNPEEYRCTIGQQYK------QE--LSADLVVCEYSLLP--------REIRSPKSLEGSFV 76 (121)
T ss_dssp EEEEEECSCHHHHHHHHHHSCTTTEEEEEESSCC------CC--TTEEEEEEEGGGSC--------TTCCCCTTCCSCEE
T ss_pred cEEEEEecCchhhHHHHHhcCCcceeEEeccccC------Cc--ccceeEEEeeecCh--------HHhcCCCCCCcccE
Confidence 4789999999999999999988889988654311 12 45799999997643 1232 4667
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008619 92 IITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 92 ImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
|++-..-+.+.+.+.+..||. ||+.|+...-|..+|+.-+++
T Consensus 77 iVLfD~F~EEa~v~vLd~Ga~-yLlrPIT~kvldAvIraFLrq 118 (121)
T 3q7r_A 77 LVLLDFFDEETSVDLLDRGFW-YLIRPITPRILKSAISLFLSQ 118 (121)
T ss_dssp EEEESSCCHHHHHHHHHTTCE-EEESCCCHHHHHHHHHHHHHH
T ss_pred EEEehhhchHHHHHHHhCCce-eEeccCcHHHHHHHHHHHHhc
Confidence 888888899999999999999 999999999999988877764
No 115
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=95.11 E-value=0.41 Score=44.16 Aligned_cols=117 Identities=14% Similarity=0.128 Sum_probs=83.2
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHhhCCCEEE---EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCC-HHHHHHHcC-
Q 008619 17 GLRVLLL----DQDSSAAAELKFKLEAMDYIVS---TFYNENEALSAFSDKPENFHVAIVEVTTSNTDG-SFKFLETAK- 87 (559)
Q Consensus 17 glrVLIV----DDD~~~~~~L~~~L~~~gy~V~---ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~md-G~eLLe~Ir- 87 (559)
..+||+. |-+..=...+..+|+..||+|+ .....++.++.+.+ ..+|+|.+-..+...+. --++++.++
T Consensus 18 ~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~--~~~diV~lS~~~~~~~~~~~~~i~~L~~ 95 (161)
T 2yxb_A 18 RYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQ--EDVDVIGVSILNGAHLHLMKRLMAKLRE 95 (161)
T ss_dssp SCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHH--TTCSEEEEEESSSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHh--cCCCEEEEEeechhhHHHHHHHHHHHHh
Confidence 4688888 7788888899999999999999 34578899999998 78999999887654111 123344442
Q ss_pred ----CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008619 88 ----DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 136 (559)
Q Consensus 88 ----diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~ 136 (559)
+++|+ +.+..-.+....+.+.||+.++..-.+..+....+..++..+.
T Consensus 96 ~g~~~i~v~-vGG~~~~~~~~~l~~~G~d~v~~~~~~~~~~~~~~~~~~~~~~ 147 (161)
T 2yxb_A 96 LGADDIPVV-LGGTIPIPDLEPLRSLGIREIFLPGTSLGEIIEKVRKLAEEKR 147 (161)
T ss_dssp TTCTTSCEE-EEECCCHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred cCCCCCEEE-EeCCCchhcHHHHHHCCCcEEECCCCCHHHHHHHHHHHHHHhh
Confidence 46655 5555554445556789999877666677777777777776543
No 116
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=94.00 E-value=0.19 Score=46.73 Aligned_cols=77 Identities=9% Similarity=0.184 Sum_probs=58.8
Q ss_pred CHHHHHHHhhcCCCCeeEEEEec-CCCCCCCH--HHHHHHcC---CCcEEEEecCCCHHHHHHHHHcCCCEEE------e
Q 008619 49 NENEALSAFSDKPENFHVAIVEV-TTSNTDGS--FKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFL------R 116 (559)
Q Consensus 49 ~~~eAL~~Lre~~~~pDLVIvDv-~MPd~mdG--~eLLe~Ir---diPVImLSa~~d~e~v~kAi~~GA~DYL------v 116 (559)
+..+.+..+... ...++++.++ .++. ++| .++++.++ ++|||.+++....+...++++.||++++ .
T Consensus 131 ~~~~~i~~~~~~-~~~~vli~~~~~~g~-~~g~~~~~i~~~~~~~~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~~~ 208 (237)
T 3cwo_X 131 LLRDWVVEVEKR-GAGEILLTSIDRDGT-KSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHF 208 (237)
T ss_dssp EHHHHHHHHHHH-TCSEEEEEETTTTTC-CSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHHTCSEEEESHHHHT
T ss_pred CHHHHHHHHhhc-CCCeEEEEecCCCCc-cccccHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHHHc
Confidence 456666666552 3456889987 5555 666 45676664 7999999999999999999999999996 6
Q ss_pred CCCCHHHHHHH
Q 008619 117 KPLSEDKLRNL 127 (559)
Q Consensus 117 KPis~eeL~~i 127 (559)
+|++..+++..
T Consensus 209 ~~~~~~~~~~~ 219 (237)
T 3cwo_X 209 REIDVRELKEY 219 (237)
T ss_dssp TSSCHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 78888887764
No 117
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=92.52 E-value=3.5 Score=36.68 Aligned_cols=111 Identities=8% Similarity=0.005 Sum_probs=75.3
Q ss_pred cEEEEE----eCCHHHHHHHHHHHhhCCCEEE---EECCHHHHHHHhhcCCCCeeEEEEecCCCCCC----CHHHHHHHc
Q 008619 18 LRVLLL----DQDSSAAAELKFKLEAMDYIVS---TFYNENEALSAFSDKPENFHVAIVEVTTSNTD----GSFKFLETA 86 (559)
Q Consensus 18 lrVLIV----DDD~~~~~~L~~~L~~~gy~V~---ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~m----dG~eLLe~I 86 (559)
.+|++. |-+..=...+..+|+..||+|+ .....++.++.+.+ ..+|+|.+-..+...+ .-++.++..
T Consensus 4 ~~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~~--~~~d~v~lS~~~~~~~~~~~~~i~~l~~~ 81 (137)
T 1ccw_A 4 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIE--TKADAILVSSLYGQGEIDCKGLRQKCDEA 81 (137)
T ss_dssp CEEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHH--HTCSEEEEEECSSTHHHHHTTHHHHHHHT
T ss_pred CEEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHh--cCCCEEEEEecCcCcHHHHHHHHHHHHhc
Confidence 356655 4556666788899999999988 56789999999998 7899999988775411 122333332
Q ss_pred --CCCcEEEEecC-----CCHH-HHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Q 008619 87 --KDLPTIITSNI-----HCLS-TMMKCIALGAVEFLRKPLSEDKLRNLWQHV 131 (559)
Q Consensus 87 --rdiPVImLSa~-----~d~e-~v~kAi~~GA~DYLvKPis~eeL~~iIq~v 131 (559)
++++|+ +.+. .+.. ....+.+.|++.|+.---+..++...+...
T Consensus 82 g~~~i~v~-vGG~~~~~~~~~~~~~~~~~~~G~d~~~~~g~~~~~~~~~l~~~ 133 (137)
T 1ccw_A 82 GLEGILLY-VGGNIVVGKQHWPDVEKRFKDMGYDRVYAPGTPPEVGIADLKKD 133 (137)
T ss_dssp TCTTCEEE-EEESCSSSSCCHHHHHHHHHHTTCSEECCTTCCHHHHHHHHHHH
T ss_pred CCCCCEEE-EECCCcCchHhhhhhHHHHHHCCCCEEECCCCCHHHHHHHHHHH
Confidence 256654 4443 2222 245578999999998777777777665543
No 118
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=91.81 E-value=0.78 Score=44.76 Aligned_cols=97 Identities=11% Similarity=0.132 Sum_probs=69.5
Q ss_pred CcEEEEEeC----CHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecC------CCCCCCHHHHHHH
Q 008619 17 GLRVLLLDQ----DSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVT------TSNTDGSFKFLET 85 (559)
Q Consensus 17 glrVLIVDD----D~~~~~~L~~~L~~~gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~------MPd~mdG~eLLe~ 85 (559)
|..+++++- ++.....+.+.+++.|..+. .+.+.++|...... .+|+|.+..+ ... ..++++++.
T Consensus 101 Gad~I~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~---Gad~Ig~~~~g~t~~~~~~-~~~~~li~~ 176 (229)
T 3q58_A 101 GADIIAFDASFRSRPVDIDSLLTRIRLHGLLAMADCSTVNEGISCHQK---GIEFIGTTLSGYTGPITPV-EPDLAMVTQ 176 (229)
T ss_dssp TCSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECSSHHHHHHHHHT---TCSEEECTTTTSSSSCCCS-SCCHHHHHH
T ss_pred CCCEEEECccccCChHHHHHHHHHHHHCCCEEEEecCCHHHHHHHHhC---CCCEEEecCccCCCCCcCC-CCCHHHHHH
Confidence 445555553 34445556666666787766 77888888777655 5898875332 122 346788877
Q ss_pred cC--CCcEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008619 86 AK--DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (559)
Q Consensus 86 Ir--diPVImLSa~~d~e~v~kAi~~GA~DYLvK 117 (559)
++ ++|||.-.+-.+.+.+.+++.+||+++++=
T Consensus 177 l~~~~ipvIA~GGI~t~~d~~~~~~~GadgV~VG 210 (229)
T 3q58_A 177 LSHAGCRVIAEGRYNTPALAANAIEHGAWAVTVG 210 (229)
T ss_dssp HHTTTCCEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHcCCCEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 75 799999998889999999999999999974
No 119
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=90.19 E-value=1.4 Score=43.08 Aligned_cols=97 Identities=9% Similarity=0.120 Sum_probs=68.4
Q ss_pred CcEEEEEeC----CHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecC-C-----CCCCCHHHHHHH
Q 008619 17 GLRVLLLDQ----DSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVT-T-----SNTDGSFKFLET 85 (559)
Q Consensus 17 glrVLIVDD----D~~~~~~L~~~L~~~gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~-M-----Pd~mdG~eLLe~ 85 (559)
|..+++++- ++.....+.+.+++.|..+. .+.+.+++...... .+|+|.+..+ . .. ..++++++.
T Consensus 101 Gad~V~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~---Gad~Ig~~~~g~t~~~~~~-~~~~~~i~~ 176 (232)
T 3igs_A 101 GAAIIAVDGTARQRPVAVEALLARIHHHHLLTMADCSSVDDGLACQRL---GADIIGTTMSGYTTPDTPE-EPDLPLVKA 176 (232)
T ss_dssp TCSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECCSHHHHHHHHHT---TCSEEECTTTTSSSSSCCS-SCCHHHHHH
T ss_pred CCCEEEECccccCCHHHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHhC---CCCEEEEcCccCCCCCCCC-CCCHHHHHH
Confidence 344555553 34445556666666677766 77888888776655 5898865332 1 12 345777777
Q ss_pred cC--CCcEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008619 86 AK--DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (559)
Q Consensus 86 Ir--diPVImLSa~~d~e~v~kAi~~GA~DYLvK 117 (559)
++ ++|||.-.+-.+.+.+.+++.+||+++++=
T Consensus 177 l~~~~ipvIA~GGI~t~~d~~~~~~~GadgV~VG 210 (232)
T 3igs_A 177 LHDAGCRVIAEGRYNSPALAAEAIRYGAWAVTVG 210 (232)
T ss_dssp HHHTTCCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHhcCCcEEEECCCCCHHHHHHHHHcCCCEEEEe
Confidence 65 799999988889999999999999999974
No 120
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=89.84 E-value=1.4 Score=45.33 Aligned_cols=106 Identities=17% Similarity=0.116 Sum_probs=78.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhh---CCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEE
Q 008619 16 KGLRVLLLDQDSSAAAELKFKLEA---MDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTI 92 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~---~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVI 92 (559)
..+++.|+|.|....+.|..+|.+ ..|+|..|++.+.+.+.+++ ..+|++|+|-.+.. . . .+......++
T Consensus 20 ~~i~l~i~d~d~~Y~~~l~~y~~~~~~~~~~v~~ft~~e~~~~~~~~--~~~dilli~e~~~~-~-~---~~~~~~~~v~ 92 (373)
T 3fkq_A 20 MKIKVALLDKDKEYLDRLTGVFNTKYADKLEVYSFTDEKNAIESVKE--YRIDVLIAEEDFNI-D-K---SEFKRNCGLA 92 (373)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHHHTTTTEEEEEESCHHHHHHHHHH--HTCSEEEEETTCCC-C-G---GGGCSSCEEE
T ss_pred ceEEEEEEeCCHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHhc--CCCCEEEEcchhhh-h-h---hhhcccCcEE
Confidence 348999999999999999999964 36899999999999999998 78999999987765 2 1 1222356777
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008619 93 ITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 93 mLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
+++.....+ ...-...+.|--+.++|...+...+..
T Consensus 93 ~l~~~~~~~------~~~~~~~i~kyq~~~~i~~ei~~~~~e 128 (373)
T 3fkq_A 93 YFTGTPGIE------LIKDEIAICKYQRVDVIFKQILGVYSD 128 (373)
T ss_dssp EEESCTTCC------EETTEEEEETTSCHHHHHHHHHHHHHH
T ss_pred EEECCCCCC------cCCCCceeeccCCHHHHHHHHHHHHhh
Confidence 776653221 011224688988999998777666543
No 121
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=87.45 E-value=3 Score=41.91 Aligned_cols=100 Identities=11% Similarity=0.068 Sum_probs=65.2
Q ss_pred HHHHHHHHHhhCCCEEE--EECCHHHHHHHhhcCCCCeeEEEEecCCCC-CC---CHHHHHHHcC---CCcEEEEecCCC
Q 008619 29 AAAELKFKLEAMDYIVS--TFYNENEALSAFSDKPENFHVAIVEVTTSN-TD---GSFKFLETAK---DLPTIITSNIHC 99 (559)
Q Consensus 29 ~~~~L~~~L~~~gy~V~--ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd-~m---dG~eLLe~Ir---diPVImLSa~~d 99 (559)
-.....+.|.+.||.|. ++.+...|-+ +.+ -.+++| +.+..|- .. .-+++++.++ ++|||+=..-..
T Consensus 123 ~tv~aa~~L~~~Gf~Vlpy~~dd~~~akr-l~~--~G~~aV-mPlg~pIGsG~Gi~~~~lI~~I~e~~~vPVI~eGGI~T 198 (265)
T 1wv2_A 123 ETLKAAEQLVKDGFDVMVYTSDDPIIARQ-LAE--IGCIAV-MPLAGLIGSGLGICNPYNLRIILEEAKVPVLVDAGVGT 198 (265)
T ss_dssp HHHHHHHHHHTTTCEEEEEECSCHHHHHH-HHH--SCCSEE-EECSSSTTCCCCCSCHHHHHHHHHHCSSCBEEESCCCS
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCHHHHHH-HHH--hCCCEE-EeCCccCCCCCCcCCHHHHHHHHhcCCCCEEEeCCCCC
Confidence 33345566667799988 4555555544 444 457877 4444332 01 1267777775 799998778889
Q ss_pred HHHHHHHHHcCCCEEEeC-----CCCHHHHHHHHHHHH
Q 008619 100 LSTMMKCIALGAVEFLRK-----PLSEDKLRNLWQHVV 132 (559)
Q Consensus 100 ~e~v~kAi~~GA~DYLvK-----Pis~eeL~~iIq~vl 132 (559)
.+.+..++++||++.++- --++..+...+...+
T Consensus 199 PsDAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av 236 (265)
T 1wv2_A 199 ASDAAIAMELGCEAVLMNTAIAHAKDPVMMAEAMKHAI 236 (265)
T ss_dssp HHHHHHHHHHTCSEEEESHHHHTSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHH
Confidence 999999999999999864 333555555554444
No 122
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=85.56 E-value=6.6 Score=35.10 Aligned_cols=105 Identities=11% Similarity=0.088 Sum_probs=73.5
Q ss_pred CcEEEEEeCCH-HHHHHHHHHHhhCCCEEEE---ECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CCcE
Q 008619 17 GLRVLLLDQDS-SAAAELKFKLEAMDYIVST---FYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPT 91 (559)
Q Consensus 17 glrVLIVDDD~-~~~~~L~~~L~~~gy~V~t---a~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-diPV 91 (559)
.++++|+.+.. .....+..++...+ .|.. .-+.++...++.. .|++|+-... + .-|..+++.+. .+||
T Consensus 70 ~~~l~i~G~~~~~~~~~l~~~~~~~~-~v~~~~g~~~~~~~~~~~~~----ad~~l~ps~~-e-~~~~~~~Ea~a~G~Pv 142 (200)
T 2bfw_A 70 EMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYGS----VDFVIIPSYF-E-PFGLVALEAMCLGAIP 142 (200)
T ss_dssp GEEEEEECCBCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHTT----CSEEEECCSC-C-SSCHHHHHHHHTTCEE
T ss_pred CeEEEEECCCChHHHHHHHHHHHhcC-CEEEEeccCCHHHHHHHHHH----CCEEEECCCC-C-CccHHHHHHHHCCCCE
Confidence 46888887644 35567777887776 4443 3355576777765 6888885443 4 45778888875 8998
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008619 92 IITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 92 ImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
|+. .. ....+.+ .|-.+++..+-+.++|...|..++.
T Consensus 143 I~~-~~---~~~~e~~-~~~~g~~~~~~~~~~l~~~i~~l~~ 179 (200)
T 2bfw_A 143 IAS-AV---GGLRDII-TNETGILVKAGDPGELANAILKALE 179 (200)
T ss_dssp EEE-SC---HHHHHHC-CTTTCEEECTTCHHHHHHHHHHHHH
T ss_pred EEe-CC---CChHHHc-CCCceEEecCCCHHHHHHHHHHHHh
Confidence 754 32 2344555 7889999999999999999988875
No 123
>1r8j_A KAIA; circadian clock protein; 2.03A {Synechococcus elongatus pcc 7942} SCOP: a.186.1.1 c.23.1.5 PDB: 1m2e_A 1m2f_A
Probab=82.82 E-value=8.2 Score=38.95 Aligned_cols=120 Identities=8% Similarity=0.048 Sum_probs=82.2
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEec-CCCCCCCHHHHHHHc----CC
Q 008619 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEV-TTSNTDGSFKFLETA----KD 88 (559)
Q Consensus 14 ~p~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv-~MPd~mdG~eLLe~I----rd 88 (559)
+...+.|-++-.++.....+...|...-|.++.+.+.++.++.++.+++.+|++|+.. ... -..++..+ .-
T Consensus 6 ~~~~LsI~~~~~s~~l~~~~~~~L~~dRY~l~~~~s~~~f~~~le~~~e~iDcLvle~~~~~----~~~~~~~L~~~g~l 81 (289)
T 1r8j_A 6 VLSQIAICIWVESTAILQDCQRALSADRYQLQVCESGEMLLEYAQTHRDQIDCLILVAANPS----FRAVVQQLCFEGVV 81 (289)
T ss_dssp CCCCEEEEEECCCHHHHHHHHHHTCSTTEEEEEECSHHHHHHHHHHSTTSCSEEEEETTSTT----HHHHHHHHHHTTCC
T ss_pred cccceeEEEEeCCHHHHHHHHHhcccCceEEEEcCcHHHHHHHHHhccccCCEEEEEeCCCc----cHHHHHHHHHcCcc
Confidence 3445788899999999999999998888999999999999999988778999999987 432 33344444 36
Q ss_pred CcEEEEecCCCHHHHH----HHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHhcC
Q 008619 89 LPTIITSNIHCLSTMM----KCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNAG 139 (559)
Q Consensus 89 iPVImLSa~~d~e~v~----kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~~~~ 139 (559)
+|+|++..... ..-. ..+-+ ..+.-...-..++|-..|..++.+.....
T Consensus 82 LP~vil~~~~~-~~~~~~~~~~~yh-~aEv~l~~~ql~~l~~~Id~AI~~Fl~l~ 134 (289)
T 1r8j_A 82 VPAIVVGDRDS-EDPDEPAKEQLYH-SAELHLGIHQLEQLPYQVDAALAEFLRLA 134 (289)
T ss_dssp CCEEEESCCC-------CCSSCSSB-TTCEEECTTCGGGHHHHHHHHHHHHHHHC
T ss_pred ccEEEeccCcc-ccCCCCccceecc-HHHHcCCHhHHHHHHHHHHHHHHHHHccC
Confidence 89998866422 0000 01111 12222334456778888888877766544
No 124
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=82.53 E-value=11 Score=37.74 Aligned_cols=95 Identities=17% Similarity=0.110 Sum_probs=62.8
Q ss_pred EEEEeC--CHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCC-CHHHHHHH----cC-CCc
Q 008619 20 VLLLDQ--DSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTD-GSFKFLET----AK-DLP 90 (559)
Q Consensus 20 VLIVDD--D~~~~~~L~~~L~~~gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~m-dG~eLLe~----Ir-diP 90 (559)
|+|+.. +......+.......|..+. .+.+.+++...+.. ..|+|-+.-.-.... -+++.+.. +. ++|
T Consensus 139 VlLi~a~l~~~~l~~l~~~a~~lGl~~lvev~t~ee~~~A~~~---Gad~IGv~~r~l~~~~~dl~~~~~l~~~v~~~~p 215 (272)
T 3qja_A 139 LLLIVAALEQSVLVSMLDRTESLGMTALVEVHTEQEADRALKA---GAKVIGVNARDLMTLDVDRDCFARIAPGLPSSVI 215 (272)
T ss_dssp EEEEGGGSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH---TCSEEEEESBCTTTCCBCTTHHHHHGGGSCTTSE
T ss_pred EEEecccCCHHHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHC---CCCEEEECCCcccccccCHHHHHHHHHhCcccCE
Confidence 555322 33445555666667788765 78899887766654 478877763211101 12333333 33 689
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008619 91 TIITSNIHCLSTMMKCIALGAVEFLRK 117 (559)
Q Consensus 91 VImLSa~~d~e~v~kAi~~GA~DYLvK 117 (559)
||..++-.+.+.+.++.++||+++++=
T Consensus 216 vVaegGI~t~edv~~l~~~GadgvlVG 242 (272)
T 3qja_A 216 RIAESGVRGTADLLAYAGAGADAVLVG 242 (272)
T ss_dssp EEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred EEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 999988888999999999999999984
No 125
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=82.26 E-value=11 Score=36.94 Aligned_cols=108 Identities=11% Similarity=-0.013 Sum_probs=71.7
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHhhCCCEEE---EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCH-HHHHHHcC-
Q 008619 17 GLRVLLL----DQDSSAAAELKFKLEAMDYIVS---TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGS-FKFLETAK- 87 (559)
Q Consensus 17 glrVLIV----DDD~~~~~~L~~~L~~~gy~V~---ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG-~eLLe~Ir- 87 (559)
.-+||++ |-+..=...+..+|+..||+|+ ..-..++.++.+.+ ..+|+|.+-..+...+.. -++++.++
T Consensus 123 ~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~~--~~~d~V~lS~l~~~~~~~~~~~i~~l~~ 200 (258)
T 2i2x_B 123 KGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQK--EKPIMLTGTALMTTTMYAFKEVNDMLLE 200 (258)
T ss_dssp SCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHHH--HCCSEEEEECCCTTTTTHHHHHHHHHHT
T ss_pred CCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEEeeccCCHHHHHHHHHHHHh
Confidence 4578887 6677778889999999999987 34577888888888 789999998877652443 34566664
Q ss_pred ---CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 008619 88 ---DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVV 132 (559)
Q Consensus 88 ---diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vl 132 (559)
+++|++--.....+. +-..||+.|.. +..+....++.++
T Consensus 201 ~~~~~~v~vGG~~~~~~~---~~~igad~~~~---da~~av~~~~~l~ 242 (258)
T 2i2x_B 201 NGIKIPFACGGGAVNQDF---VSQFALGVYGE---EAADAPKIADAII 242 (258)
T ss_dssp TTCCCCEEEESTTCCHHH---HHTSTTEEECS---STTHHHHHHHHHH
T ss_pred cCCCCcEEEECccCCHHH---HHHcCCeEEEC---CHHHHHHHHHHHH
Confidence 577665544444433 23779876654 3344444444433
No 126
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=82.15 E-value=3.4 Score=33.99 Aligned_cols=47 Identities=17% Similarity=0.286 Sum_probs=38.6
Q ss_pred ceecCHHHHHHHHHHHHHhCCCCCCChHHHhhcCCCCCCHHHHHHhhhhhhh
Q 008619 319 KVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRM 370 (559)
Q Consensus 319 r~~Wt~~lh~~Fv~av~~lg~~~a~pk~il~~m~v~~lt~~~v~shlQkyr~ 370 (559)
+-.||.|=+.+|++||+..| ++ =+.|-+.|+ |=|..+++.|-++|-+
T Consensus 18 ~~~WT~eEd~~Ll~~v~~~G-~~--W~~IA~~v~--~RT~~qcr~r~~~~~i 64 (79)
T 2yus_A 18 GREWTEQETLLLLEALEMYK-DD--WNKVSEHVG--SRTQDECILHFLRLPI 64 (79)
T ss_dssp SCCCCHHHHHHHHHHHHHSS-SC--HHHHHHHHS--SCCHHHHHHHHTTSCC
T ss_pred CCCcCHHHHHHHHHHHHHhC-CC--HHHHHHHcC--CCCHHHHHHHHHHhcc
Confidence 56899999999999999999 32 366777764 7899999999888743
No 127
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=81.54 E-value=7.5 Score=44.46 Aligned_cols=118 Identities=11% Similarity=0.093 Sum_probs=81.2
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHhhCCCEEEEE---CCHHHHHHHhhcCCCCeeEEEEecCCCCCCC-HHHHHHHcC-
Q 008619 17 GLRVLLL----DQDSSAAAELKFKLEAMDYIVSTF---YNENEALSAFSDKPENFHVAIVEVTTSNTDG-SFKFLETAK- 87 (559)
Q Consensus 17 glrVLIV----DDD~~~~~~L~~~L~~~gy~V~ta---~~~~eAL~~Lre~~~~pDLVIvDv~MPd~md-G~eLLe~Ir- 87 (559)
..+|+|. |.+..=...+..+|+..||+|+.- .+.++.++...+ ..+|+|.+-..|...+. .-++++.++
T Consensus 604 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e--~~adiVglSsl~~~~~~~~~~vi~~Lr~ 681 (762)
T 2xij_A 604 RPRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTPREVAQQAVD--ADVHAVGVSTLAAGHKTLVPELIKELNS 681 (762)
T ss_dssp CCEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHH--TTCSEEEEEECSSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCCCCCHHHHHHHHHH--cCCCEEEEeeecHHHHHHHHHHHHHHHh
Confidence 3577776 556666677888999999999843 467899999988 78999998877654122 233444443
Q ss_pred ----CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHh
Q 008619 88 ----DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFN 137 (559)
Q Consensus 88 ----diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~~ 137 (559)
+++ |++-+..-......+.+.||++|+..-.+..++...+...+.....
T Consensus 682 ~G~~dv~-VivGG~~P~~d~~~l~~~GaD~~f~pgtd~~e~~~~i~~~l~~~~~ 734 (762)
T 2xij_A 682 LGRPDIL-VMCGGVIPPQDYEFLFEVGVSNVFGPGTRIPKAAVQVLDDIEKCLE 734 (762)
T ss_dssp TTCTTSE-EEEEESCCGGGHHHHHHHTCCEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCE-EEEeCCCCcccHHHHHhCCCCEEeCCCCCHHHHHHHHHHHHHHHhh
Confidence 444 3444312222334467899999999777998888888887766554
No 128
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=80.94 E-value=4.5 Score=40.16 Aligned_cols=106 Identities=10% Similarity=0.121 Sum_probs=71.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCC--CEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CCcEEE
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAMD--YIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTII 93 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~g--y~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-diPVIm 93 (559)
.++++|+.+.+. ..+..+++... +.+.-.-+..+..+.+.. .|++|+-..-.+ .-|..+++.+. .+|||+
T Consensus 240 ~~~l~i~G~~~~--~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~----adv~v~ps~~~e-~~~~~~~Ea~a~G~PvI~ 312 (406)
T 2gek_A 240 DVEILIVGRGDE--DELREQAGDLAGHLRFLGQVDDATKASAMRS----ADVYCAPHLGGE-SFGIVLVEAMAAGTAVVA 312 (406)
T ss_dssp TCEEEEESCSCH--HHHHHHTGGGGGGEEECCSCCHHHHHHHHHH----SSEEEECCCSCC-SSCHHHHHHHHHTCEEEE
T ss_pred CeEEEEEcCCcH--HHHHHHHHhccCcEEEEecCCHHHHHHHHHH----CCEEEecCCCCC-CCchHHHHHHHcCCCEEE
Confidence 467778877665 55666655432 222223344555666666 588877532234 45778888875 899875
Q ss_pred EecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008619 94 TSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 94 LSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
. .. ....+.+..|-++|+..|-+.++|.+.|..++.
T Consensus 313 ~-~~---~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~ 348 (406)
T 2gek_A 313 S-DL---DAFRRVLADGDAGRLVPVDDADGMAAALIGILE 348 (406)
T ss_dssp C-CC---HHHHHHHTTTTSSEECCTTCHHHHHHHHHHHHH
T ss_pred e-cC---CcHHHHhcCCCceEEeCCCCHHHHHHHHHHHHc
Confidence 3 22 445677888999999999999999999988875
No 129
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=79.78 E-value=17 Score=36.45 Aligned_cols=87 Identities=18% Similarity=0.043 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCC-CCC-CC---HHHHHHHcC-CCcEEEEecCCCH
Q 008619 28 SAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTT-SNT-DG---SFKFLETAK-DLPTIITSNIHCL 100 (559)
Q Consensus 28 ~~~~~L~~~L~~~gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~M-Pd~-md---G~eLLe~Ir-diPVImLSa~~d~ 100 (559)
..+..|.......|..+. .+.+.+|+...+.. .+|+|=+.-.- -.. .| -.++++.+. ++++|.-++-...
T Consensus 156 ~~l~~l~~~a~~lGl~~lvevh~~eEl~~A~~~---ga~iIGinnr~l~t~~~dl~~~~~L~~~ip~~~~vIaesGI~t~ 232 (272)
T 3tsm_A 156 DLAKELEDTAFALGMDALIEVHDEAEMERALKL---SSRLLGVNNRNLRSFEVNLAVSERLAKMAPSDRLLVGESGIFTH 232 (272)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECSHHHHHHHTTS---CCSEEEEECBCTTTCCBCTHHHHHHHHHSCTTSEEEEESSCCSH
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhc---CCCEEEECCCCCccCCCChHHHHHHHHhCCCCCcEEEECCCCCH
Confidence 344555555667798766 88899998777654 57877665322 110 11 234555555 7899999999999
Q ss_pred HHHHHHHHcCCCEEEeC
Q 008619 101 STMMKCIALGAVEFLRK 117 (559)
Q Consensus 101 e~v~kAi~~GA~DYLvK 117 (559)
+.+.++.++||+++|+-
T Consensus 233 edv~~l~~~Ga~gvLVG 249 (272)
T 3tsm_A 233 EDCLRLEKSGIGTFLIG 249 (272)
T ss_dssp HHHHHHHTTTCCEEEEC
T ss_pred HHHHHHHHcCCCEEEEc
Confidence 99999999999999973
No 130
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=78.25 E-value=7.3 Score=44.32 Aligned_cols=116 Identities=13% Similarity=0.046 Sum_probs=79.1
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHhhCCCEEEEE---CCHHHHHHHhhcCCCCeeEEEEecCCCCCCC-HHHHHHHcC-
Q 008619 17 GLRVLLL----DQDSSAAAELKFKLEAMDYIVSTF---YNENEALSAFSDKPENFHVAIVEVTTSNTDG-SFKFLETAK- 87 (559)
Q Consensus 17 glrVLIV----DDD~~~~~~L~~~L~~~gy~V~ta---~~~~eAL~~Lre~~~~pDLVIvDv~MPd~md-G~eLLe~Ir- 87 (559)
..+|+|. |.+..=...+..+|+..||+|+.- .+.+++++...+ ..+|+|.+-..|...+. .-++++.++
T Consensus 596 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e--~~adiVglSsl~~~~~~~~~~vi~~L~~ 673 (727)
T 1req_A 596 RPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVE--ADVHVVGVSSLAGGHLTLVPALRKELDK 673 (727)
T ss_dssp CCEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTTBCHHHHHHHHHH--TTCSEEEEEECSSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHH--cCCCEEEEeeecHhHHHHHHHHHHHHHh
Confidence 3577776 556666677888888899999843 467899999988 78999999887654122 233445553
Q ss_pred ----CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008619 88 ----DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (559)
Q Consensus 88 ----diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~ 135 (559)
+++ |++-+..-......+.+.||+.|+.--.+..++...+...++..
T Consensus 674 ~G~~~i~-VivGG~~p~~d~~~l~~~GaD~~f~~gt~~~e~a~~l~~~l~~~ 724 (727)
T 1req_A 674 LGRPDIL-ITVGGVIPEQDFDELRKDGAVEIYTPGTVIPESAISLVKKLRAS 724 (727)
T ss_dssp TTCTTSE-EEEEESCCGGGHHHHHHTTEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred cCCCCCE-EEEcCCCccccHHHHHhCCCCEEEcCCccHHHHHHHHHHHHHHh
Confidence 433 34443222223345688999999997788888887777666543
No 131
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=77.97 E-value=2.5 Score=35.44 Aligned_cols=55 Identities=22% Similarity=0.271 Sum_probs=37.1
Q ss_pred ceecCHHHHHHHHHHHHHhCCCCCCChHHHhhcC-----------------CCCCCHHHHHHhhhhhhhhhcc
Q 008619 319 KVDWTPELHKKFVQAVEQLGVDQAIPSRILELMK-----------------VEGLTRHNVASHLQKYRMHRRH 374 (559)
Q Consensus 319 r~~Wt~~lh~~Fv~av~~lg~~~a~pk~il~~m~-----------------v~~lt~~~v~shlQkyr~~~~~ 374 (559)
.-+|.++|-..|++|+...-..- +=|.+|..-| -.-=|+.+|.||||--+-...+
T Consensus 6 e~vW~~~lE~aF~eaL~~yp~~g-~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~~~ 77 (82)
T 2hzd_A 6 EGVWSPDIEQSFQEALSIYPPCG-RRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKSR 77 (82)
T ss_dssp SCCSCHHHHHHHHHHHHHSCSSS-CCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHHHHcCCCC-ccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHHhh
Confidence 45899999999999999885211 2233332111 1344899999999987766544
No 132
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=77.08 E-value=4.9 Score=37.90 Aligned_cols=95 Identities=11% Similarity=0.048 Sum_probs=65.1
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHhhCCCEEEEE---CCHHHHHHHhhcCCCCeeEEEEecCCCCCCCH-HHHHHHcC-
Q 008619 17 GLRVLLL----DQDSSAAAELKFKLEAMDYIVSTF---YNENEALSAFSDKPENFHVAIVEVTTSNTDGS-FKFLETAK- 87 (559)
Q Consensus 17 glrVLIV----DDD~~~~~~L~~~L~~~gy~V~ta---~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG-~eLLe~Ir- 87 (559)
.-+||+. |-+..-...+..+|+..||+|+.. ...++.++.+++ ..+|+|.+-..+...+.. -++++.++
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~--~~~d~v~lS~~~~~~~~~~~~~i~~l~~ 165 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKK--YQPDIVGMSALLTTTMMNMKSTIDALIA 165 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHH--HCCSEEEEECCSGGGTHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEeccccccHHHHHHHHHHHHh
Confidence 3478887 677788889999999999999853 367788888887 689999998876641222 33444443
Q ss_pred -----CCcEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008619 88 -----DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (559)
Q Consensus 88 -----diPVImLSa~~d~e~v~kAi~~GA~DYLv 116 (559)
++||++--..-+.+.. -..||+.|..
T Consensus 166 ~~~~~~~~v~vGG~~~~~~~~---~~~gad~~~~ 196 (210)
T 1y80_A 166 AGLRDRVKVIVGGAPLSQDFA---DEIGADGYAP 196 (210)
T ss_dssp TTCGGGCEEEEESTTCCHHHH---HHHTCSEECS
T ss_pred cCCCCCCeEEEECCCCCHHHH---HHcCCeEEEC
Confidence 3676655444444332 4579987754
No 133
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=76.54 E-value=6.2 Score=40.21 Aligned_cols=109 Identities=17% Similarity=0.097 Sum_probs=66.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCE----------EEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHc
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAMDYI----------VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA 86 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~----------V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~I 86 (559)
..+++||.+.+.....|++++...|.. |.......+...++.. .|++++--...+ ..|..+++.+
T Consensus 225 ~~~lvivG~g~~~~~~l~~~~~~~gl~~~~~~~~~~~v~~~~~~~dl~~~y~~----aDv~vl~ss~~e-~gg~~~lEAm 299 (374)
T 2xci_A 225 SLKLILVPRHIENAKIFEKKARDFGFKTSFFENLEGDVILVDRFGILKELYPV----GKIAIVGGTFVN-IGGHNLLEPT 299 (374)
T ss_dssp TCEEEEEESSGGGHHHHHHHHHHTTCCEEETTCCCSSEEECCSSSCHHHHGGG----EEEEEECSSSSS-SCCCCCHHHH
T ss_pred CcEEEEECCCHHHHHHHHHHHHHCCCceEEecCCCCcEEEECCHHHHHHHHHh----CCEEEECCcccC-CCCcCHHHHH
Confidence 468888888776555677777766643 2222223444455544 688777433333 3456677777
Q ss_pred C-CCcEEEEecCCC-HHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008619 87 K-DLPTIITSNIHC-LSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 87 r-diPVImLSa~~d-~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
. .+|||.-+.... .+.+......| ++..+-+.++|.+++..++.
T Consensus 300 A~G~PVI~~~~~~~~~e~~~~~~~~G---~l~~~~d~~~La~ai~~ll~ 345 (374)
T 2xci_A 300 CWGIPVIYGPYTHKVNDLKEFLEKEG---AGFEVKNETELVTKLTELLS 345 (374)
T ss_dssp TTTCCEEECSCCTTSHHHHHHHHHTT---CEEECCSHHHHHHHHHHHHH
T ss_pred HhCCCEEECCCccChHHHHHHHHHCC---CEEEeCCHHHHHHHHHHHHh
Confidence 5 899985323233 34343334455 45666789999999888875
No 134
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=76.14 E-value=13 Score=33.10 Aligned_cols=105 Identities=10% Similarity=0.077 Sum_probs=68.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHh--hC----CCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CC
Q 008619 17 GLRVLLLDQDSSAAAELKFKLE--AM----DYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DL 89 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~--~~----gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-di 89 (559)
.++++|+.+.... ..+..++. .. .+.+.-.-+.++...++.. .|++|+-.. .+ .-|..+++.+. .+
T Consensus 50 ~~~l~i~G~~~~~-~~l~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~----adi~v~ps~-~e-~~~~~~~Eama~G~ 122 (177)
T 2f9f_A 50 DEKLYIVGWFSKG-DHAERYARKIMKIAPDNVKFLGSVSEEELIDLYSR----CKGLLCTAK-DE-DFGLTPIEAMASGK 122 (177)
T ss_dssp TSCEEEEBCCCTT-STHHHHHHHHHHHSCTTEEEEESCCHHHHHHHHHH----CSEEEECCS-SC-CSCHHHHHHHHTTC
T ss_pred CcEEEEEecCccH-HHHHHHHHhhhcccCCcEEEeCCCCHHHHHHHHHh----CCEEEeCCC-cC-CCChHHHHHHHcCC
Confidence 4677888754332 23333333 21 2344444566677777776 588886333 34 45778888875 89
Q ss_pred cEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008619 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 90 PVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
|||+.. . ....+.+..|.++++. +-+.++|.+.|..++.
T Consensus 123 PvI~~~-~---~~~~e~i~~~~~g~~~-~~d~~~l~~~i~~l~~ 161 (177)
T 2f9f_A 123 PVIAVN-E---GGFKETVINEKTGYLV-NADVNEIIDAMKKVSK 161 (177)
T ss_dssp CEEEES-S---HHHHHHCCBTTTEEEE-CSCHHHHHHHHHHHHH
T ss_pred cEEEeC-C---CCHHHHhcCCCccEEe-CCCHHHHHHHHHHHHh
Confidence 988643 2 3455667778899999 9999999999888774
No 135
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=75.87 E-value=17 Score=37.45 Aligned_cols=106 Identities=13% Similarity=0.105 Sum_probs=73.2
Q ss_pred CcEEEEEeCCH-HHHHHHHHHHhhCCCEEE-EEC-CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CCcEE
Q 008619 17 GLRVLLLDQDS-SAAAELKFKLEAMDYIVS-TFY-NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTI 92 (559)
Q Consensus 17 glrVLIVDDD~-~~~~~L~~~L~~~gy~V~-ta~-~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-diPVI 92 (559)
..+++||.+.+ .....|+.+....+-.|+ ... +.++....+.. .|++|+=.. .+ .-|+.+++.+. .+|||
T Consensus 320 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----adv~v~pS~-~E-~~~~~~lEAma~G~PvI 393 (485)
T 1rzu_A 320 GGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGYNEPLSHLMQAG----CDAIIIPSR-FE-PCGLTQLYALRYGCIPV 393 (485)
T ss_dssp TCEEEEEECBCHHHHHHHHHHHHHTTTTEEEEESCCHHHHHHHHHH----CSEEEECCS-CC-SSCSHHHHHHHHTCEEE
T ss_pred CceEEEEeCCchHHHHHHHHHHHhCCCcEEEecCCCHHHHHHHHhc----CCEEEECcc-cC-CCCHHHHHHHHCCCCEE
Confidence 57888888765 356777777776553343 223 44444466665 588877544 34 45777888875 89998
Q ss_pred EEecCCCHHHHHHHHHcC---------CCEEEeCCCCHHHHHHHHHHHH
Q 008619 93 ITSNIHCLSTMMKCIALG---------AVEFLRKPLSEDKLRNLWQHVV 132 (559)
Q Consensus 93 mLSa~~d~e~v~kAi~~G---------A~DYLvKPis~eeL~~iIq~vl 132 (559)
+... .-..+.+..| .++|+..|-+.++|.+.|..++
T Consensus 394 ~s~~----gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll 438 (485)
T 1rzu_A 394 VART----GGLADTVIDANHAALASKAATGVQFSPVTLDGLKQAIRRTV 438 (485)
T ss_dssp EESS----HHHHHHCCBCCHHHHHTTCCCBEEESSCSHHHHHHHHHHHH
T ss_pred EeCC----CChhheecccccccccccCCcceEeCCCCHHHHHHHHHHHH
Confidence 6432 3455667777 8999999999999999998887
No 136
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=75.52 E-value=25 Score=35.07 Aligned_cols=113 Identities=10% Similarity=-0.009 Sum_probs=75.9
Q ss_pred CcEEEEE----eCCHHHHHHHHHH--------HhhC-CCEEEE---ECCHHHHHHHhhcCCCCeeEEEEecCCCC---CC
Q 008619 17 GLRVLLL----DQDSSAAAELKFK--------LEAM-DYIVST---FYNENEALSAFSDKPENFHVAIVEVTTSN---TD 77 (559)
Q Consensus 17 glrVLIV----DDD~~~~~~L~~~--------L~~~-gy~V~t---a~~~~eAL~~Lre~~~~pDLVIvDv~MPd---~m 77 (559)
..+|++. |-+..=...+..+ |+.. ||+|+- .-..++.++.+.+ ..+|+|.+-..+.. .+
T Consensus 120 ~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~vp~e~iv~aa~e--~~~d~VglS~l~t~~~~~~ 197 (262)
T 1xrs_B 120 KIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKAVE--LEADVLLVSQTVTQKNVHI 197 (262)
T ss_dssp CEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHHHHHH--TTCSEEEEECCCCTTSHHH
T ss_pred CCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCCCCCHHHHHHHHHH--cCCCEEEEEeecCCccchH
Confidence 4567665 5666666777777 9999 999984 4578889999998 78999999887764 02
Q ss_pred CH-HHHHHHcC------CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008619 78 GS-FKFLETAK------DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 78 dG-~eLLe~Ir------diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
.. -++++.++ +++||+=-..-+.+ .+.+.||+.|..--....++...+...+..
T Consensus 198 ~~~~~~i~~L~~~g~~~~i~vivGG~~~~~~---~a~~iGad~~~~da~~~~~~a~~l~~~~~~ 258 (262)
T 1xrs_B 198 QNMTHLIELLEAEGLRDRFVLLCGGPRINNE---IAKELGYDAGFGPGRFADDVATFAVKTLND 258 (262)
T ss_dssp HHHHHHHHHHHHTTCGGGSEEEEECTTCCHH---HHHTTTCSEEECTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCcCCHH---HHHHcCCeEEECCchHHHHHHHHHHHHHHh
Confidence 22 12344442 25554333333333 367889999998888887777766555443
No 137
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=75.52 E-value=12 Score=35.17 Aligned_cols=72 Identities=13% Similarity=0.146 Sum_probs=51.1
Q ss_pred CCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCC------CCHHHHHHHcC---CCcEEEEecCCCHHHHHHHHHcC
Q 008619 41 DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNT------DGSFKFLETAK---DLPTIITSNIHCLSTMMKCIALG 110 (559)
Q Consensus 41 gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~------mdG~eLLe~Ir---diPVImLSa~~d~e~v~kAi~~G 110 (559)
+..+. .+.+.+++...... ..|+|+++-..+.. ..|+++++.++ ++|||+..+- +.+.+.++++.|
T Consensus 110 ~~~ig~sv~t~~~~~~a~~~---gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~~~~pvia~GGI-~~~nv~~~~~~G 185 (221)
T 1yad_A 110 HLHIGRSVHSLEEAVQAEKE---DADYVLFGHVFETDCKKGLEGRGVSLLSDIKQRISIPVIAIGGM-TPDRLRDVKQAG 185 (221)
T ss_dssp TCEEEEEECSHHHHHHHHHT---TCSEEEEECCC----------CHHHHHHHHHHHCCSCEEEESSC-CGGGHHHHHHTT
T ss_pred CCEEEEEcCCHHHHHHHHhC---CCCEEEECCccccCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHHcC
Confidence 55443 77888888776654 58999997643320 12567777664 7999887776 788899999999
Q ss_pred CCEEEe
Q 008619 111 AVEFLR 116 (559)
Q Consensus 111 A~DYLv 116 (559)
|+.+.+
T Consensus 186 a~gv~v 191 (221)
T 1yad_A 186 ADGIAV 191 (221)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 998876
No 138
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.32 E-value=4.1 Score=32.57 Aligned_cols=51 Identities=27% Similarity=0.346 Sum_probs=39.5
Q ss_pred ceecCHHHHHHHHHHHHHhCCCCCCCh---HHHhhcCCCCCCHHHHHHhhhhhhhh
Q 008619 319 KVDWTPELHKKFVQAVEQLGVDQAIPS---RILELMKVEGLTRHNVASHLQKYRMH 371 (559)
Q Consensus 319 r~~Wt~~lh~~Fv~av~~lg~~~a~pk---~il~~m~v~~lt~~~v~shlQkyr~~ 371 (559)
+-.||.|=+..|+++|.++|.+.-.|. .|-+.| +|=|..+|+.|-|+|-..
T Consensus 8 ~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~~ 61 (75)
T 2yum_A 8 NQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADEL--GNRTAKQVASQVQKYFIK 61 (75)
T ss_dssp SSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHGG
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHHH
Confidence 347999999999999999995432223 444444 789999999999998654
No 139
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=75.09 E-value=5.5 Score=36.78 Aligned_cols=111 Identities=17% Similarity=0.202 Sum_probs=69.7
Q ss_pred cEEEEE------eCCHHHHHHHHHHHhhCCCEEEE--EC-------------CH----HHHHHHhhcCCCCeeEEEEecC
Q 008619 18 LRVLLL------DQDSSAAAELKFKLEAMDYIVST--FY-------------NE----NEALSAFSDKPENFHVAIVEVT 72 (559)
Q Consensus 18 lrVLIV------DDD~~~~~~L~~~L~~~gy~V~t--a~-------------~~----~eAL~~Lre~~~~pDLVIvDv~ 72 (559)
++|.+. +.+......+.+.|++.| .|.+ +. +. +..++.|+. .|+||.++.
T Consensus 3 mkIYlAGP~f~~~e~~~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~----aD~vvA~l~ 77 (152)
T 4fyk_A 3 RSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQ----ADVVVAEVT 77 (152)
T ss_dssp CEEEEECCSTTCCTTHHHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHHH----CSEEEEECS
T ss_pred ceEEEECCCCCcHHHHHHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHH----CCEEEEeCC
Confidence 455555 345567788899999888 5531 11 11 112344444 799999998
Q ss_pred CCCCCCHHHHHHHc-CCCcEEEEecCC---CHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008619 73 TSNTDGSFKFLETA-KDLPTIITSNIH---CLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 73 MPd~mdG~eLLe~I-rdiPVImLSa~~---d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
-++.+.++|+--.. ...|||++.... ....++++...| ..|-++.+..++|..+|...+..
T Consensus 78 ~~d~Gt~~EiG~A~algkPV~~l~~~~~~~~ls~mi~G~~~~-~~~~~~~Y~~~el~~il~~f~~~ 142 (152)
T 4fyk_A 78 QPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAMIRGAADG-SRFQVWDYAEGEVETMLDRYFEA 142 (152)
T ss_dssp SCCHHHHHHHHHHHHTTCCEEEEECGGGSCCCCHHHHHHCCS-SSEEEEECCTTCHHHHHHHHHC-
T ss_pred CCCCCHHHHHHHHHHcCCeEEEEEeCCccchhHHHHcCCCCC-CeEEEEEecHHHHHHHHHHHHHh
Confidence 77633467765544 489999987643 445566666554 44777777768888887766543
No 140
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=74.21 E-value=21 Score=35.49 Aligned_cols=105 Identities=11% Similarity=0.055 Sum_probs=74.1
Q ss_pred CcEEEEEeCCHH-HHHHHHHHHhhCCCEEEE-EC--CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CCcE
Q 008619 17 GLRVLLLDQDSS-AAAELKFKLEAMDYIVST-FY--NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPT 91 (559)
Q Consensus 17 glrVLIVDDD~~-~~~~L~~~L~~~gy~V~t-a~--~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-diPV 91 (559)
.++++|+.+.+. ....++.+....+ .++. .. +.++....+.. .|++|+-... + .-|..+++.+. .+||
T Consensus 285 ~~~l~i~G~g~~~~~~~l~~~~~~~~-~~~~~~g~~~~~~~~~~~~~----adv~v~ps~~-e-~~~~~~~EAma~G~Pv 357 (439)
T 3fro_A 285 EMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYGS----VDFVIIPSYF-E-PFGLVALEAMCLGAIP 357 (439)
T ss_dssp GEEEEEECCCCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHTT----CSEEEECBSC-C-SSCHHHHHHHHTTCEE
T ss_pred CeEEEEEcCCChhHHHHHHHHHhhcC-CEEEEcCCCCHHHHHHHHHH----CCEEEeCCCC-C-CccHHHHHHHHCCCCe
Confidence 478888876643 3467777777777 4443 33 56666666665 5888875543 4 56788888875 8998
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008619 92 IITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 92 ImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
|+. ... .+.+.+..| ++++..|-+.++|.+.|..++.
T Consensus 358 i~s-~~~---~~~e~~~~~-~g~~~~~~d~~~la~~i~~ll~ 394 (439)
T 3fro_A 358 IAS-AVG---GLRDIITNE-TGILVKAGDPGELANAILKALE 394 (439)
T ss_dssp EEE-SST---HHHHHCCTT-TCEEECTTCHHHHHHHHHHHHH
T ss_pred EEc-CCC---CcceeEEcC-ceEEeCCCCHHHHHHHHHHHHh
Confidence 864 333 344455567 9999999999999999988876
No 141
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=74.05 E-value=11 Score=37.79 Aligned_cols=94 Identities=13% Similarity=0.135 Sum_probs=59.3
Q ss_pred HHHHhhCCCEEE-EE-CCHHHHHHHhhcCCCCeeEEEEecCCCCCCCH-----HHHHHHc----CC-CcEEEEecCCCHH
Q 008619 34 KFKLEAMDYIVS-TF-YNENEALSAFSDKPENFHVAIVEVTTSNTDGS-----FKFLETA----KD-LPTIITSNIHCLS 101 (559)
Q Consensus 34 ~~~L~~~gy~V~-ta-~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG-----~eLLe~I----rd-iPVImLSa~~d~e 101 (559)
.+.|.+.||.|. .| .+...| +.+.+ -.+++| +.+.-|- ..| .++++.+ .+ +|||+=..-...+
T Consensus 117 a~~L~k~Gf~Vlpy~~~D~~~a-k~l~~--~G~~aV-mPlg~pI-GsG~Gi~~~~~L~~i~~~~~~~vPVI~~GGI~tps 191 (268)
T 2htm_A 117 AERLIEEDFLVLPYMGPDLVLA-KRLAA--LGTATV-MPLAAPI-GSGWGVRTRALLELFAREKASLPPVVVDAGLGLPS 191 (268)
T ss_dssp HHHHHHTTCEECCEECSCHHHH-HHHHH--HTCSCB-EEBSSST-TTCCCSTTHHHHHHHHHTTTTSSCBEEESCCCSHH
T ss_pred HHHHHHCCCEEeeccCCCHHHH-HHHHh--cCCCEE-EecCccC-cCCcccCCHHHHHHHHHhcCCCCeEEEeCCCCCHH
Confidence 445556699987 34 455444 44444 356776 5544432 233 2334443 26 9999988888999
Q ss_pred HHHHHHHcCCCEEEeC-----CCCHHHHHHHHHHHH
Q 008619 102 TMMKCIALGAVEFLRK-----PLSEDKLRNLWQHVV 132 (559)
Q Consensus 102 ~v~kAi~~GA~DYLvK-----Pis~eeL~~iIq~vl 132 (559)
.+..++++||++.|+- --++..+...+..++
T Consensus 192 DAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av 227 (268)
T 2htm_A 192 HAAEVMELGLDAVLVNTAIAEAQDPPAMAEAFRLAV 227 (268)
T ss_dssp HHHHHHHTTCCEEEESHHHHTSSSHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHH
Confidence 9999999999999864 334555555554444
No 142
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=73.66 E-value=9.5 Score=37.26 Aligned_cols=105 Identities=15% Similarity=0.226 Sum_probs=68.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCC--EEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CCcEEE
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAMDY--IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTII 93 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy--~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-diPVIm 93 (559)
.++++|+.+.. ...+..+++..+. .|......++..+.+.. .|++|+-.. .+ .-|..+++.+. .+|||+
T Consensus 228 ~~~l~i~G~g~--~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~v~ps~-~e-~~~~~~~Ea~a~G~Pvi~ 299 (374)
T 2iw1_A 228 NTLLFVVGQDK--PRKFEALAEKLGVRSNVHFFSGRNDVSELMAA----ADLLLHPAY-QE-AAGIVLLEAITAGLPVLT 299 (374)
T ss_dssp TEEEEEESSSC--CHHHHHHHHHHTCGGGEEEESCCSCHHHHHHH----CSEEEECCS-CC-SSCHHHHHHHHHTCCEEE
T ss_pred ceEEEEEcCCC--HHHHHHHHHHcCCCCcEEECCCcccHHHHHHh----cCEEEeccc-cC-CcccHHHHHHHCCCCEEE
Confidence 35777777654 2445555554432 34444444455555555 577777543 34 45788888875 899987
Q ss_pred EecCCCHHHHHHHHHcCCCEEEeC-CCCHHHHHHHHHHHHH
Q 008619 94 TSNIHCLSTMMKCIALGAVEFLRK-PLSEDKLRNLWQHVVH 133 (559)
Q Consensus 94 LSa~~d~e~v~kAi~~GA~DYLvK-Pis~eeL~~iIq~vlr 133 (559)
.....-. +.+..|-++++.. |.+.++|.+.+..++.
T Consensus 300 ~~~~~~~----e~i~~~~~g~~~~~~~~~~~l~~~i~~l~~ 336 (374)
T 2iw1_A 300 TAVCGYA----HYIADANCGTVIAEPFSQEQLNEVLRKALT 336 (374)
T ss_dssp ETTSTTT----HHHHHHTCEEEECSSCCHHHHHHHHHHHHH
T ss_pred ecCCCch----hhhccCCceEEeCCCCCHHHHHHHHHHHHc
Confidence 6543333 3456678899998 8999999999988875
No 143
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=73.34 E-value=12 Score=38.56 Aligned_cols=106 Identities=11% Similarity=0.025 Sum_probs=71.7
Q ss_pred CcEEEEEeCCH-HHHHHHHHHHhhCCCEEE-EEC-CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CCcEE
Q 008619 17 GLRVLLLDQDS-SAAAELKFKLEAMDYIVS-TFY-NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTI 92 (559)
Q Consensus 17 glrVLIVDDD~-~~~~~L~~~L~~~gy~V~-ta~-~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-diPVI 92 (559)
..+++||.+.+ .....|+.+....+-.|. ... ..++....+.. .|++|+-.. .+ .-|..+++.+. .+|||
T Consensus 321 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----adv~v~pS~-~E-~~g~~~lEAma~G~PvI 394 (485)
T 2qzs_A 321 GGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGG----ADVILVPSR-FE-PCGLTQLYGLKYGTLPL 394 (485)
T ss_dssp TCEEEEEEEECHHHHHHHHHHHHHSTTTEEEEESCCHHHHHHHHHH----CSEEEECCS-CC-SSCSHHHHHHHHTCEEE
T ss_pred CcEEEEEeCCchHHHHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHh----CCEEEECCc-cC-CCcHHHHHHHHCCCCEE
Confidence 46788887654 456677777766543333 222 33333456655 588777543 34 45777888775 89998
Q ss_pred EEecCCCHHHHHHHHHcC---------CCEEEeCCCCHHHHHHHHHHHH
Q 008619 93 ITSNIHCLSTMMKCIALG---------AVEFLRKPLSEDKLRNLWQHVV 132 (559)
Q Consensus 93 mLSa~~d~e~v~kAi~~G---------A~DYLvKPis~eeL~~iIq~vl 132 (559)
+... .-..+.+..| .++|+..|-+.++|.+.|..++
T Consensus 395 ~s~~----gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll 439 (485)
T 2qzs_A 395 VRRT----GGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRRAF 439 (485)
T ss_dssp EESS----HHHHHHCCBCCHHHHHTTCCCBEEECSSSHHHHHHHHHHHH
T ss_pred ECCC----CCccceeccCccccccccccceEEECCCCHHHHHHHHHHHH
Confidence 6532 3455667777 8999999999999999998887
No 144
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=73.24 E-value=24 Score=32.52 Aligned_cols=73 Identities=14% Similarity=0.115 Sum_probs=50.2
Q ss_pred CCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCC------CCCHHHHHHHcC---CCcEEEEecCCCHHHHHHHHHc
Q 008619 40 MDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSN------TDGSFKFLETAK---DLPTIITSNIHCLSTMMKCIAL 109 (559)
Q Consensus 40 ~gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd------~mdG~eLLe~Ir---diPVImLSa~~d~e~v~kAi~~ 109 (559)
.+..+. .+.+..++...... .+|.|+++-..+. ...+++.++.++ ++||++..+-. .+.+.++++.
T Consensus 107 ~~~~~~v~~~t~~e~~~~~~~---g~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~pvia~GGI~-~~nv~~~~~~ 182 (215)
T 1xi3_A 107 PNLIIGASVYSLEEALEAEKK---GADYLGAGSVFPTKTKEDARVIGLEGLRKIVESVKIPVVAIGGIN-KDNAREVLKT 182 (215)
T ss_dssp TTSEEEEEESSHHHHHHHHHH---TCSEEEEECSSCC----CCCCCHHHHHHHHHHHCSSCEEEESSCC-TTTHHHHHTT
T ss_pred CCCEEEEecCCHHHHHHHHhc---CCCEEEEcCCccCCCCCCCCCcCHHHHHHHHHhCCCCEEEECCcC-HHHHHHHHHc
Confidence 344433 57888887665443 5899998753342 024677777764 78988776655 7778888999
Q ss_pred CCCEEEe
Q 008619 110 GAVEFLR 116 (559)
Q Consensus 110 GA~DYLv 116 (559)
||+.+.+
T Consensus 183 Ga~gv~v 189 (215)
T 1xi3_A 183 GVDGIAV 189 (215)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 9999865
No 145
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=73.07 E-value=18 Score=34.10 Aligned_cols=76 Identities=11% Similarity=0.139 Sum_probs=54.5
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEE
Q 008619 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTI 92 (559)
Q Consensus 14 ~p~glrVLIVDDD~~~~~~L~~~L~~~gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVI 92 (559)
|++..+|+++-....+...++.++...+.++. ...+.++++...++....+|+||+ . +.-.++|+..-++|||
T Consensus 1 m~~~~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~~~v~~a~~~~~~~dVIIS-----R-Ggta~~lr~~~~iPVV 74 (196)
T 2q5c_A 1 MSLSLKIALISQNENLLNLFPKLALEKNFIPITKTASLTRASKIAFGLQDEVDAIIS-----R-GATSDYIKKSVSIPSI 74 (196)
T ss_dssp -CCCCEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHHHHHHHHHHHTTTCSEEEE-----E-HHHHHHHHTTCSSCEE
T ss_pred CCCCCcEEEEEccHHHHHHHHHHHhhhCCceEEEECCHHHHHHHHHHhcCCCeEEEE-----C-ChHHHHHHHhCCCCEE
Confidence 45557999999999999999998887666665 567788888876652257898887 2 2334566655578888
Q ss_pred EEe
Q 008619 93 ITS 95 (559)
Q Consensus 93 mLS 95 (559)
-+.
T Consensus 75 ~I~ 77 (196)
T 2q5c_A 75 SIK 77 (196)
T ss_dssp EEC
T ss_pred EEc
Confidence 763
No 146
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=72.57 E-value=11 Score=30.54 Aligned_cols=48 Identities=13% Similarity=0.120 Sum_probs=38.8
Q ss_pred eecCHHHHHHHHHHHHHhCCCCCCChHHHhhc-CCCCCCHHHHHHhhhhhh
Q 008619 320 VDWTPELHKKFVQAVEQLGVDQAIPSRILELM-KVEGLTRHNVASHLQKYR 369 (559)
Q Consensus 320 ~~Wt~~lh~~Fv~av~~lg~~~a~pk~il~~m-~v~~lt~~~v~shlQkyr 369 (559)
-.||.+=.+.|++||.++|.+ +|.+--.+- -|+|=|-.+|+.|-+.+.
T Consensus 19 ~~WT~eEd~~L~~al~~~g~~--~~~rW~~IA~~vpGRT~~qcr~Ry~~L~ 67 (73)
T 2cqr_A 19 EPWTQNQQKLLELALQQYPRG--SSDCWDKIARCVPSKSKEDCIARYKLLV 67 (73)
T ss_dssp CCCCHHHHHHHHHHHHHSCSS--SHHHHHHHGGGCSSSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCC--CCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 469999999999999999954 677655443 468999999999977654
No 147
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=72.40 E-value=11 Score=38.08 Aligned_cols=107 Identities=12% Similarity=0.172 Sum_probs=70.3
Q ss_pred CcEEEEEeCC---HHHHHHHHHHHhhCCC--EEEEEC--CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-C
Q 008619 17 GLRVLLLDQD---SSAAAELKFKLEAMDY--IVSTFY--NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-D 88 (559)
Q Consensus 17 glrVLIVDDD---~~~~~~L~~~L~~~gy--~V~ta~--~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-d 88 (559)
.++++|+.+. ......+++++...+. .|.... +.++..+.+.. .|++|+-.. .+ .-|..+++.+. .
T Consensus 276 ~~~l~i~G~~~~~g~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~~~----adv~v~ps~-~e-~~~~~~~Eama~G 349 (438)
T 3c48_A 276 NLRVIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRA----ADIVAVPSF-NE-SFGLVAMEAQASG 349 (438)
T ss_dssp SEEEEEECCBC------CHHHHHHHHTTCTTTEEEECCCCHHHHHHHHHH----CSEEEECCS-CC-SSCHHHHHHHHTT
T ss_pred ceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEcCCCChHHHHHHHHh----CCEEEECcc-cc-CCchHHHHHHHcC
Confidence 4677888761 1334566666666543 244333 44677777766 577776443 34 45778888875 8
Q ss_pred CcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008619 89 LPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 89 iPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
+|||+. .... ..+.+..|.++++..+-+.++|.+.|..++.
T Consensus 350 ~PvI~~-~~~~---~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~ 390 (438)
T 3c48_A 350 TPVIAA-RVGG---LPIAVAEGETGLLVDGHSPHAWADALATLLD 390 (438)
T ss_dssp CCEEEE-SCTT---HHHHSCBTTTEEEESSCCHHHHHHHHHHHHH
T ss_pred CCEEec-CCCC---hhHHhhCCCcEEECCCCCHHHHHHHHHHHHc
Confidence 998864 3333 3345677889999999999999999988875
No 148
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=72.24 E-value=7.8 Score=33.42 Aligned_cols=39 Identities=36% Similarity=0.497 Sum_probs=29.2
Q ss_pred EEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhc
Q 008619 21 LLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSD 59 (559)
Q Consensus 21 LIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre 59 (559)
|+-|.|..-++.+++.+++.||+|..+++.++|+.++++
T Consensus 81 llqdqdeneleefkrkiesqgyevrkvtddeealkivre 119 (134)
T 2lci_A 81 LLQDQDENELEEFKRKIESQGYEVRKVTDDEEALKIVRE 119 (134)
T ss_dssp EEECSCHHHHHHHHHHHHTTTCEEEEECCHHHHHHHHHH
T ss_pred EeecCchhHHHHHHHHHHhCCeeeeecCChHHHHHHHHH
Confidence 444666666777777777778888888888888887765
No 149
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=72.01 E-value=7.6 Score=30.89 Aligned_cols=48 Identities=27% Similarity=0.361 Sum_probs=39.0
Q ss_pred ceecCHHHHHHHHHHHHHhCCCCCCChHHHhhcCCCCCCHHHHHHhhhhhhhh
Q 008619 319 KVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMH 371 (559)
Q Consensus 319 r~~Wt~~lh~~Fv~av~~lg~~~a~pk~il~~m~v~~lt~~~v~shlQkyr~~ 371 (559)
+-.||.|=+..|+++|.++|-+ =+.|-.. ++|=|..+|+.|.++|-..
T Consensus 9 ~~~WT~eEd~~l~~~~~~~G~~---W~~Ia~~--~~~Rt~~q~k~r~~~~l~~ 56 (72)
T 2cu7_A 9 SVKWTIEEKELFEQGLAKFGRR---WTKISKL--IGSRTVLQVKSYARQYFKN 56 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHTCSC---HHHHHHH--HSSSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcC---HHHHHHH--cCCCCHHHHHHHHHHHHHH
Confidence 4589999999999999999952 2455554 4799999999999988544
No 150
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=71.52 E-value=5.9 Score=38.03 Aligned_cols=95 Identities=5% Similarity=-0.008 Sum_probs=64.7
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHhhCCCEEEEE---CCHHHHHHHhhcCCCCeeEEEE--ecCCCCCCCH-HHHHHHc
Q 008619 17 GLRVLLL----DQDSSAAAELKFKLEAMDYIVSTF---YNENEALSAFSDKPENFHVAIV--EVTTSNTDGS-FKFLETA 86 (559)
Q Consensus 17 glrVLIV----DDD~~~~~~L~~~L~~~gy~V~ta---~~~~eAL~~Lre~~~~pDLVIv--Dv~MPd~mdG-~eLLe~I 86 (559)
.-+|++. |-+..=...+..+|+..||+|+.. -..++.++.+.+ ..+|+|.+ -..|...+.. -++++.+
T Consensus 92 ~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~--~~~d~v~l~~S~l~~~~~~~~~~~i~~l 169 (215)
T 3ezx_A 92 AGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAK--HKGEKVLLVGSALMTTSMLGQKDLMDRL 169 (215)
T ss_dssp CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHH--TTTSCEEEEEECSSHHHHTHHHHHHHHH
T ss_pred CCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHH--cCCCEEEEEchhcccCcHHHHHHHHHHH
Confidence 4578877 667777788899999999999843 477888899998 78999988 7665431222 2344444
Q ss_pred C------CCcEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008619 87 K------DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (559)
Q Consensus 87 r------diPVImLSa~~d~e~v~kAi~~GA~DYLv 116 (559)
+ +++|++=-+.-..+. +-+.||+.|-.
T Consensus 170 ~~~~~~~~v~v~vGG~~~~~~~---a~~iGad~~~~ 202 (215)
T 3ezx_A 170 NEEKLRDSVKCMFGGAPVSDKW---IEEIGADATAE 202 (215)
T ss_dssp HHTTCGGGSEEEEESSSCCHHH---HHHHTCCBCCS
T ss_pred HHcCCCCCCEEEEECCCCCHHH---HHHhCCeEEEC
Confidence 3 466665444445443 34569988854
No 151
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=71.45 E-value=38 Score=35.72 Aligned_cols=98 Identities=18% Similarity=0.213 Sum_probs=63.8
Q ss_pred CcEEEEEeC----CHHHHHHHHHHHhhCCCEEE--EECCHHHHHHHhhcCCCCeeEEEEecC-------C--CC-CCCHH
Q 008619 17 GLRVLLLDQ----DSSAAAELKFKLEAMDYIVS--TFYNENEALSAFSDKPENFHVAIVEVT-------T--SN-TDGSF 80 (559)
Q Consensus 17 glrVLIVDD----D~~~~~~L~~~L~~~gy~V~--ta~~~~eAL~~Lre~~~~pDLVIvDv~-------M--Pd-~mdG~ 80 (559)
+..++++|- .....+.++.+-+..+..|+ .+.+.++|..++.. ..|.|++... . .+ ....+
T Consensus 156 GvdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~V~t~e~A~~a~~a---GAD~I~vG~g~Gs~~~tr~~~g~g~p~~ 232 (400)
T 3ffs_A 156 GVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIEN---GADGIKVGIGPGSICTTRIVAGVGVPQI 232 (400)
T ss_dssp TCSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEEECSHHHHHHHHHT---TCSEEEECC---------CCSCBCCCHH
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEeecCCHHHHHHHHHc---CCCEEEEeCCCCcCcccccccccchhHH
Confidence 456777752 23344555555455576665 68899998877655 5898888321 0 00 01234
Q ss_pred HHHHHc----C--CCcEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008619 81 KFLETA----K--DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (559)
Q Consensus 81 eLLe~I----r--diPVImLSa~~d~e~v~kAi~~GA~DYLvK 117 (559)
.++..+ . ++|||.-..-.+...+.+++.+||+...+=
T Consensus 233 ~al~~v~~~~~~~~IPVIA~GGI~~~~di~kalalGAd~V~vG 275 (400)
T 3ffs_A 233 TAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIG 275 (400)
T ss_dssp HHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTTCSEEEEC
T ss_pred HHHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCCCEEEEC
Confidence 444443 2 699998888888999999999999988763
No 152
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=70.93 E-value=28 Score=36.17 Aligned_cols=97 Identities=18% Similarity=0.226 Sum_probs=64.8
Q ss_pred CcEEEEEe----CCHHHHHHHHHHHhhC-CCEEE--EECCHHHHHHHhhcCCCCeeEEEEecCCCCC-----------CC
Q 008619 17 GLRVLLLD----QDSSAAAELKFKLEAM-DYIVS--TFYNENEALSAFSDKPENFHVAIVEVTTSNT-----------DG 78 (559)
Q Consensus 17 glrVLIVD----DD~~~~~~L~~~L~~~-gy~V~--ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~-----------md 78 (559)
+..+++|| +.....+.++.+-+.. +..|+ .+.+.++|..++.. ..|.|.+.+. |+. ..
T Consensus 120 Gvd~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~a---GAD~I~vG~g-pGs~~~tr~~~g~g~p 195 (366)
T 4fo4_A 120 GVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEA---GVSAVKVGIG-PGSICTTRIVTGVGVP 195 (366)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHH---TCSEEEECSS-CSTTBCHHHHHCCCCC
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEeeeeCCHHHHHHHHHc---CCCEEEEecC-CCCCCCcccccCcccc
Confidence 56678776 3344555555555555 55554 68899999887765 5798888422 110 12
Q ss_pred HHHHHHHcC------CCcEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008619 79 SFKFLETAK------DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (559)
Q Consensus 79 G~eLLe~Ir------diPVImLSa~~d~e~v~kAi~~GA~DYLvK 117 (559)
.+.++..+. ++|||..-.-.+...+.+++.+||+...+=
T Consensus 196 ~~~~l~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~vG 240 (366)
T 4fo4_A 196 QITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVG 240 (366)
T ss_dssp HHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred hHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 234443332 799998888878889999999999988763
No 153
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=70.09 E-value=1.5 Score=43.69 Aligned_cols=50 Identities=14% Similarity=0.080 Sum_probs=35.6
Q ss_pred CcEEEEEeCC--HHHHHHHHHHHhhCCCEEEEECCHHH--HHHHhhcCCCCeeEEEEe
Q 008619 17 GLRVLLLDQD--SSAAAELKFKLEAMDYIVSTFYNENE--ALSAFSDKPENFHVAIVE 70 (559)
Q Consensus 17 glrVLIVDDD--~~~~~~L~~~L~~~gy~V~ta~~~~e--AL~~Lre~~~~pDLVIvD 70 (559)
|.+||||+++ +.....|...|+..||+|+......- -...|. .||+||++
T Consensus 4 m~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~----~yDvIIl~ 57 (259)
T 3rht_A 4 MTRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLA----KQDLVILS 57 (259)
T ss_dssp --CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHHH----TCSEEEEE
T ss_pred CceEEEECCCCchhHHHHHHHHHHhCCceEEEecccccccChhHHh----cCCEEEEc
Confidence 4699999988 66788899999999999987654321 123333 48999886
No 154
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=69.48 E-value=15 Score=31.79 Aligned_cols=105 Identities=15% Similarity=0.196 Sum_probs=69.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEE-ECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CC-cEEE
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVST-FYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DL-PTII 93 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~t-a~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-di-PVIm 93 (559)
.++++|+.+.+. ...+..++...+..|.. .-+.++..+.+.. .|++|+-.. .+ .-|..+++.+. .+ |||.
T Consensus 32 ~~~l~i~G~g~~-~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~----adv~v~ps~-~e-~~~~~~~Eama~G~vPvi~ 104 (166)
T 3qhp_A 32 DIVLLLKGKGPD-EKKIKLLAQKLGVKAEFGFVNSNELLEILKT----CTLYVHAAN-VE-SEAIACLEAISVGIVPVIA 104 (166)
T ss_dssp GEEEEEECCSTT-HHHHHHHHHHHTCEEECCCCCHHHHHHHHTT----CSEEEECCC-SC-CCCHHHHHHHHTTCCEEEE
T ss_pred CeEEEEEeCCcc-HHHHHHHHHHcCCeEEEeecCHHHHHHHHHh----CCEEEECCc-cc-CccHHHHHHHhcCCCcEEe
Confidence 578888887644 46677777776665554 2235666666655 688887544 34 56788888875 76 9887
Q ss_pred EecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008619 94 TSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 94 LSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
.+....... .+..|.. +..+-+.++|...+..++.
T Consensus 105 ~~~~~~~~~---~~~~~~~--~~~~~~~~~l~~~i~~l~~ 139 (166)
T 3qhp_A 105 NSPLSATRQ---FALDERS--LFEPNNAKDLSAKIDWWLE 139 (166)
T ss_dssp CCTTCGGGG---GCSSGGG--EECTTCHHHHHHHHHHHHH
T ss_pred eCCCCchhh---hccCCce--EEcCCCHHHHHHHHHHHHh
Confidence 443332222 2233333 7788999999999988875
No 155
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=68.06 E-value=32 Score=33.84 Aligned_cols=99 Identities=9% Similarity=0.095 Sum_probs=57.1
Q ss_pred cEEEEE-eCCHHHHHHHHHHHhhCCCEEEEEC--CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CCcEEE
Q 008619 18 LRVLLL-DQDSSAAAELKFKLEAMDYIVSTFY--NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTII 93 (559)
Q Consensus 18 lrVLIV-DDD~~~~~~L~~~L~~~gy~V~ta~--~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-diPVIm 93 (559)
++++++ .+++..++.+++++...+ .|.... ...+...++.. .|++|+.- .|+ +++.+. .+|+|+
T Consensus 231 ~~lv~~~g~~~~~~~~l~~~~~~~~-~v~~~g~~g~~~~~~~~~~----ad~~v~~S------~g~-~lEA~a~G~PvI~ 298 (376)
T 1v4v_A 231 LTFVYPVHLNPVVREAVFPVLKGVR-NFVLLDPLEYGSMAALMRA----SLLLVTDS------GGL-QEEGAALGVPVVV 298 (376)
T ss_dssp SEEEEECCSCHHHHHHHHHHHTTCT-TEEEECCCCHHHHHHHHHT----EEEEEESC------HHH-HHHHHHTTCCEEE
T ss_pred eEEEEECCCCHHHHHHHHHHhccCC-CEEEECCCCHHHHHHHHHh----CcEEEECC------cCH-HHHHHHcCCCEEe
Confidence 566664 555545555655543222 233331 23344455544 67777632 355 667664 899997
Q ss_pred EecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008619 94 TSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 94 LSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
.........+ ++.| .++++. .+.++|.+.+..++.
T Consensus 299 ~~~~~~~~~~---~~~g-~g~lv~-~d~~~la~~i~~ll~ 333 (376)
T 1v4v_A 299 LRNVTERPEG---LKAG-ILKLAG-TDPEGVYRVVKGLLE 333 (376)
T ss_dssp CSSSCSCHHH---HHHT-SEEECC-SCHHHHHHHHHHHHT
T ss_pred ccCCCcchhh---hcCC-ceEECC-CCHHHHHHHHHHHHh
Confidence 6443333332 4556 577774 599999999888773
No 156
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=67.67 E-value=14 Score=34.97 Aligned_cols=60 Identities=12% Similarity=0.262 Sum_probs=45.4
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhCCCE---EE-EECCHHHHHHHhhcCCCCeeEEEEecCCCC
Q 008619 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDYI---VS-TFYNENEALSAFSDKPENFHVAIVEVTTSN 75 (559)
Q Consensus 14 ~p~glrVLIVDDD~~~~~~L~~~L~~~gy~---V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd 75 (559)
++.+-+|..||-++...+..++.+...|+. |. ...++.+.+..+.. ..||+|++|....+
T Consensus 78 ~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~--~~fD~V~~d~~~~~ 141 (221)
T 3dr5_A 78 LADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLAN--DSYQLVFGQVSPMD 141 (221)
T ss_dssp SCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCT--TCEEEEEECCCTTT
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcC--CCcCeEEEcCcHHH
Confidence 454679999999999999999999987764 55 55666666554433 67999999986544
No 157
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=66.43 E-value=17 Score=37.67 Aligned_cols=106 Identities=15% Similarity=0.137 Sum_probs=73.3
Q ss_pred cEEEEEeC--CH------------HHHHHHHHHHhhCCC--EEEEEC--CHHHHHHHhhcCCCCe----eEEEEecCCCC
Q 008619 18 LRVLLLDQ--DS------------SAAAELKFKLEAMDY--IVSTFY--NENEALSAFSDKPENF----HVAIVEVTTSN 75 (559)
Q Consensus 18 lrVLIVDD--D~------------~~~~~L~~~L~~~gy--~V~ta~--~~~eAL~~Lre~~~~p----DLVIvDv~MPd 75 (559)
.+++|+.+ .+ .....|+.++...|. .|.... +.++..+.+.. . |++|+-.. .+
T Consensus 295 ~~l~i~G~~~~~~~~y~~l~~~~~~y~~~l~~~~~~~~l~~~V~~~G~v~~~~~~~~~~~----a~~~~dv~v~pS~-~E 369 (499)
T 2r60_A 295 NLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNNDCRGKVSMFPLNSQQELAGCYAY----LASKGSVFALTSF-YE 369 (499)
T ss_dssp EEEEEESSCSBTTTBCTTSCHHHHHHHHHHHHHHHHTTCBTTEEEEECCSHHHHHHHHHH----HHHTTCEEEECCS-CB
T ss_pred eEEEEECCCCCcccccccccccchHHHHHHHHHHHhcCCCceEEECCCCCHHHHHHHHHh----cCcCCCEEEECcc-cC
Confidence 46778877 22 126677777777654 244333 45777777776 5 88887443 34
Q ss_pred CCCHHHHHHHcC-CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008619 76 TDGSFKFLETAK-DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 76 ~mdG~eLLe~Ir-diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
.-|..+++.+. .+|||+.. .. ...+.+..|.++++..|-+.++|.++|..++.
T Consensus 370 -g~~~~~lEAma~G~PvI~s~-~~---g~~e~v~~~~~g~l~~~~d~~~la~~i~~ll~ 423 (499)
T 2r60_A 370 -PFGLAPVEAMASGLPAVVTR-NG---GPAEILDGGKYGVLVDPEDPEDIARGLLKAFE 423 (499)
T ss_dssp -CCCSHHHHHHHTTCCEEEES-SB---HHHHHTGGGTSSEEECTTCHHHHHHHHHHHHS
T ss_pred -CCCcHHHHHHHcCCCEEEec-CC---CHHHHhcCCceEEEeCCCCHHHHHHHHHHHHh
Confidence 45778888875 89998653 22 34556778889999999999999999988773
No 158
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=65.90 E-value=33 Score=34.65 Aligned_cols=81 Identities=19% Similarity=0.117 Sum_probs=57.8
Q ss_pred HHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCC----CCHHHHHHHcC---CCcEEEEecCCCHHHHHH
Q 008619 34 KFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNT----DGSFKFLETAK---DLPTIITSNIHCLSTMMK 105 (559)
Q Consensus 34 ~~~L~~~gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~----mdG~eLLe~Ir---diPVImLSa~~d~e~v~k 105 (559)
...++..|..|. .+.+.++|...... ..|.|+++-.-.+. ...++++..++ ++|||+-.+-.+.+.+.+
T Consensus 117 ~~~l~~~g~~v~~~v~s~~~a~~a~~~---GaD~i~v~g~~~GG~~G~~~~~~ll~~i~~~~~iPviaaGGI~~~~dv~~ 193 (326)
T 3bo9_A 117 IRELKENGTKVIPVVASDSLARMVERA---GADAVIAEGMESGGHIGEVTTFVLVNKVSRSVNIPVIAAGGIADGRGMAA 193 (326)
T ss_dssp HHHHHHTTCEEEEEESSHHHHHHHHHT---TCSCEEEECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHH
T ss_pred HHHHHHcCCcEEEEcCCHHHHHHHHHc---CCCEEEEECCCCCccCCCccHHHHHHHHHHHcCCCEEEECCCCCHHHHHH
Confidence 344555676666 67888888766544 57888886432220 23567777764 799998888888999999
Q ss_pred HHHcCCCEEEeC
Q 008619 106 CIALGAVEFLRK 117 (559)
Q Consensus 106 Ai~~GA~DYLvK 117 (559)
++..||+.+.+=
T Consensus 194 al~~GA~gV~vG 205 (326)
T 3bo9_A 194 AFALGAEAVQMG 205 (326)
T ss_dssp HHHHTCSEEEES
T ss_pred HHHhCCCEEEec
Confidence 999999998863
No 159
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=65.79 E-value=8.4 Score=37.88 Aligned_cols=106 Identities=11% Similarity=0.152 Sum_probs=66.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEE--EECCHHHHHHHhhcCCCCeeEEEEecCC------CCCCCHHHHHHHcC-
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVS--TFYNENEALSAFSDKPENFHVAIVEVTT------SNTDGSFKFLETAK- 87 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~--ta~~~~eAL~~Lre~~~~pDLVIvDv~M------Pd~mdG~eLLe~Ir- 87 (559)
.++++|+.+.+.. ..++.+.....-.|. -.-+.++..+++.. .|++|+-... .+ .-|..+++.+.
T Consensus 229 ~~~l~i~G~g~~~-~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~----ad~~v~ps~~~~~~~~~e-~~~~~~~Ea~a~ 302 (394)
T 3okp_A 229 DAQLLIVGSGRYE-STLRRLATDVSQNVKFLGRLEYQDMINTLAA----ADIFAMPARTRGGGLDVE-GLGIVYLEAQAC 302 (394)
T ss_dssp TCEEEEECCCTTH-HHHHHHTGGGGGGEEEEESCCHHHHHHHHHH----CSEEEECCCCBGGGTBCC-SSCHHHHHHHHT
T ss_pred CeEEEEEcCchHH-HHHHHHHhcccCeEEEcCCCCHHHHHHHHHh----CCEEEecCcccccccccc-ccCcHHHHHHHc
Confidence 3567777654332 334444332212233 23344677777766 5888875544 14 45778888875
Q ss_pred CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008619 88 DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 88 diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
.+|||+ |.... ..+.+..| ++++..+-+.++|.+++..++.
T Consensus 303 G~PvI~-~~~~~---~~e~i~~~-~g~~~~~~d~~~l~~~i~~l~~ 343 (394)
T 3okp_A 303 GVPVIA-GTSGG---APETVTPA-TGLVVEGSDVDKLSELLIELLD 343 (394)
T ss_dssp TCCEEE-CSSTT---GGGGCCTT-TEEECCTTCHHHHHHHHHHHHT
T ss_pred CCCEEE-eCCCC---hHHHHhcC-CceEeCCCCHHHHHHHHHHHHh
Confidence 899986 43332 23345678 9999999999999999988874
No 160
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=65.27 E-value=27 Score=30.05 Aligned_cols=42 Identities=12% Similarity=0.233 Sum_probs=36.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhc
Q 008619 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSD 59 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre 59 (559)
+-|++...|...++.++.++...||.|.++.+.++.-+.+.+
T Consensus 3 ivivvfstdeetlrkfkdiikkngfkvrtvrspqelkdsiee 44 (134)
T 2l69_A 3 IVIVVFSTDEETLRKFKDIIKKNGFKVRTVRSPQELKDSIEE 44 (134)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHH
T ss_pred EEEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHH
Confidence 445666788889999999999999999999999998877766
No 161
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=65.24 E-value=45 Score=33.43 Aligned_cols=81 Identities=15% Similarity=0.058 Sum_probs=57.0
Q ss_pred HHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCC------CCHHHHHHHcC---CCcEEEEecCCCHHH
Q 008619 33 LKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNT------DGSFKFLETAK---DLPTIITSNIHCLST 102 (559)
Q Consensus 33 L~~~L~~~gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~------mdG~eLLe~Ir---diPVImLSa~~d~e~ 102 (559)
+.+.++..|..|. .+.+.++|...... ..|.|+++-.-.+. ...++++..++ ++|||+-.+-.+.+.
T Consensus 110 ~~~~l~~~gi~vi~~v~t~~~a~~~~~~---GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~~~iPviaaGGI~~~~~ 186 (328)
T 2gjl_A 110 HIAEFRRHGVKVIHKCTAVRHALKAERL---GVDAVSIDGFECAGHPGEDDIPGLVLLPAAANRLRVPIIASGGFADGRG 186 (328)
T ss_dssp HHHHHHHTTCEEEEEESSHHHHHHHHHT---TCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTTCCSCEEEESSCCSHHH
T ss_pred HHHHHHHcCCCEEeeCCCHHHHHHHHHc---CCCEEEEECCCCCcCCCCccccHHHHHHHHHHhcCCCEEEECCCCCHHH
Confidence 3344555576665 57888888766554 57888885322210 14567777775 699998888878889
Q ss_pred HHHHHHcCCCEEEe
Q 008619 103 MMKCIALGAVEFLR 116 (559)
Q Consensus 103 v~kAi~~GA~DYLv 116 (559)
+.+++..||+.+.+
T Consensus 187 v~~al~~GAdgV~v 200 (328)
T 2gjl_A 187 LVAALALGADAINM 200 (328)
T ss_dssp HHHHHHHTCSEEEE
T ss_pred HHHHHHcCCCEEEE
Confidence 99999999999886
No 162
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=64.96 E-value=12 Score=33.74 Aligned_cols=54 Identities=19% Similarity=0.249 Sum_probs=33.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhh--CCCEEEEECCHHHHHHHhhcCCCCeeEEEEecC
Q 008619 16 KGLRVLLLDQDSSAAAELKFKLEA--MDYIVSTFYNENEALSAFSDKPENFHVAIVEVT 72 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~--~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~ 72 (559)
.|.+|++||-|+.. .+...+.. .++.+..+.. ....+.+......||+||+|.-
T Consensus 29 ~g~~vlliD~D~~~--~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~l~~~yD~viiD~~ 84 (206)
T 4dzz_A 29 SGYNIAVVDTDPQM--SLTNWSKAGKAAFDVFTAAS-EKDVYGIRKDLADYDFAIVDGA 84 (206)
T ss_dssp TTCCEEEEECCTTC--HHHHHHTTSCCSSEEEECCS-HHHHHTHHHHTTTSSEEEEECC
T ss_pred CCCeEEEEECCCCC--CHHHHHhcCCCCCcEEecCc-HHHHHHHHHhcCCCCEEEEECC
Confidence 36799999988543 34445532 3577776654 3333333332246999999984
No 163
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=64.83 E-value=30 Score=29.85 Aligned_cols=74 Identities=14% Similarity=0.140 Sum_probs=50.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhc--CCCCeeEEEEecCCCCCCCHHHHHHHcC---CCc
Q 008619 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSD--KPENFHVAIVEVTTSNTDGSFKFLETAK---DLP 90 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre--~~~~pDLVIvDv~MPd~mdG~eLLe~Ir---diP 90 (559)
..+++.||.|..++ .-++..|+++..+.+.+++.+.+++ .+..+.+|++.-++.+ .--+.++.++ ..|
T Consensus 2 ~~mkiaVIgD~dtv-----~GFrLaGi~~~~v~~~ee~~~~~~~l~~~~digIIlIte~~a~--~i~~~i~~~~~~~~~P 74 (109)
T 2d00_A 2 VPVRMAVIADPETA-----QGFRLAGLEGYGASSAEEAQSLLETLVERGGYALVAVDEALLP--DPERAVERLMRGRDLP 74 (109)
T ss_dssp CCCCEEEEECHHHH-----HHHHHTTSEEEECSSHHHHHHHHHHHHHHCCCSEEEEETTTCS--CHHHHHHHHTTCCCCC
T ss_pred CccEEEEEeCHHHH-----HHHHHcCCeEEEeCCHHHHHHHHHHHhhCCCeEEEEEeHHHHH--hhHHHHHHHHhCCCCe
Confidence 45789999994332 3445568888888888877665543 1247899999988876 3445566663 578
Q ss_pred EEEEec
Q 008619 91 TIITSN 96 (559)
Q Consensus 91 VImLSa 96 (559)
+|+.-.
T Consensus 75 ~Il~IP 80 (109)
T 2d00_A 75 VLLPIA 80 (109)
T ss_dssp EEEEES
T ss_pred EEEEEC
Confidence 877644
No 164
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=64.73 E-value=39 Score=34.96 Aligned_cols=98 Identities=18% Similarity=0.219 Sum_probs=62.4
Q ss_pred CcEEEEEe----CCHHHHHHHHHHHhhCCCEEE--EECCHHHHHHHhhcCCCCeeEEEEecCCCCC----------CCHH
Q 008619 17 GLRVLLLD----QDSSAAAELKFKLEAMDYIVS--TFYNENEALSAFSDKPENFHVAIVEVTTSNT----------DGSF 80 (559)
Q Consensus 17 glrVLIVD----DD~~~~~~L~~~L~~~gy~V~--ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~----------mdG~ 80 (559)
+..+++|| +.....+.++.+-+..+..|+ .+.+.++|..++.. ..|.|.+-+.-... ...+
T Consensus 117 Gad~I~ld~a~G~~~~~~~~i~~i~~~~~~~Vivg~v~t~e~A~~l~~a---GaD~I~VG~~~Gs~~~tr~~~g~g~p~~ 193 (361)
T 3khj_A 117 GVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIEN---GADGIKVGIGPGSICTTRIVAGVGVPQI 193 (361)
T ss_dssp TCSEEEECCSCCSBHHHHHHHHHHHHHCCCEEEEEEECSHHHHHHHHHT---TCSEEEECSSCCTTCCHHHHTCBCCCHH
T ss_pred CcCeEEEeCCCCCcHHHHHHHHHHHHhcCCcEEEccCCCHHHHHHHHHc---CcCEEEEecCCCcCCCcccccCCCCCcH
Confidence 44566664 233444555555555566655 67888888776655 57888873211000 1224
Q ss_pred HHHHHcC------CCcEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008619 81 KFLETAK------DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (559)
Q Consensus 81 eLLe~Ir------diPVImLSa~~d~e~v~kAi~~GA~DYLvK 117 (559)
.++..+. ++|||.--.-.+...+.+++.+||+...+=
T Consensus 194 ~~i~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~vG 236 (361)
T 3khj_A 194 TAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIG 236 (361)
T ss_dssp HHHHHHHHHHHHHTCCEEEESCCCSHHHHHHHHHHTCSEEEES
T ss_pred HHHHHHHHHHhhcCCeEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 4444431 799998877778899999999999988763
No 165
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=64.67 E-value=24 Score=28.60 Aligned_cols=88 Identities=11% Similarity=0.108 Sum_probs=55.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCC-CEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEEEEe
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAMD-YIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITS 95 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~g-y~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVImLS 95 (559)
+++|+|+.- -.+-..+...|...| ++|+.+....+.++.+.. .....+..|+. +.-.+.+.+.+.-+|+.+
T Consensus 5 ~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~--~~~~~~~~d~~-----~~~~~~~~~~~~d~vi~~ 76 (118)
T 3ic5_A 5 RWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVLNR--MGVATKQVDAK-----DEAGLAKALGGFDAVISA 76 (118)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHT--TTCEEEECCTT-----CHHHHHHHTTTCSEEEEC
T ss_pred cCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHh--CCCcEEEecCC-----CHHHHHHHHcCCCEEEEC
Confidence 468999999 667777777777778 898866655555565654 45666666653 233344455566666665
Q ss_pred cCC--CHHHHHHHHHcCCC
Q 008619 96 NIH--CLSTMMKCIALGAV 112 (559)
Q Consensus 96 a~~--d~e~v~kAi~~GA~ 112 (559)
... ....+..+.+.|+.
T Consensus 77 ~~~~~~~~~~~~~~~~g~~ 95 (118)
T 3ic5_A 77 APFFLTPIIAKAAKAAGAH 95 (118)
T ss_dssp SCGGGHHHHHHHHHHTTCE
T ss_pred CCchhhHHHHHHHHHhCCC
Confidence 432 23445556667764
No 166
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=64.34 E-value=37 Score=33.32 Aligned_cols=99 Identities=6% Similarity=0.080 Sum_probs=54.2
Q ss_pred cEEEEE-eCCHHHHHHHHHHHhhCCCEEEEE--CCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CCcEEE
Q 008619 18 LRVLLL-DQDSSAAAELKFKLEAMDYIVSTF--YNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTII 93 (559)
Q Consensus 18 lrVLIV-DDD~~~~~~L~~~L~~~gy~V~ta--~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-diPVIm 93 (559)
++++++ .+++...+.+++++...+ .|... -...+..+++.. .|++|+.- + |. +++.+. .+|||+
T Consensus 239 ~~l~i~~g~~~~~~~~l~~~~~~~~-~v~~~g~~~~~~~~~~~~~----ad~~v~~S---g---~~-~lEA~a~G~PvI~ 306 (384)
T 1vgv_A 239 IQIVYPVHLNPNVREPVNRILGHVK-NVILIDPQEYLPFVWLMNH----AWLILTDS---G---GI-QEEAPSLGKPVLV 306 (384)
T ss_dssp EEEEEECCBCHHHHHHHHHHHTTCT-TEEEECCCCHHHHHHHHHH----CSEEEESS---S---TG-GGTGGGGTCCEEE
T ss_pred eEEEEEcCCCHHHHHHHHHHhhcCC-CEEEeCCCCHHHHHHHHHh----CcEEEECC---c---ch-HHHHHHcCCCEEE
Confidence 444443 334434444544443221 22221 122444444444 46666533 2 22 455554 899987
Q ss_pred EecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008619 94 TSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 94 LSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
........ +.++.| +++++.+ +.++|.+.+..++.
T Consensus 307 ~~~~~~~~---e~v~~g-~g~lv~~-d~~~la~~i~~ll~ 341 (384)
T 1vgv_A 307 MRDTTERP---EAVTAG-TVRLVGT-DKQRIVEEVTRLLK 341 (384)
T ss_dssp ESSCCSCH---HHHHHT-SEEEECS-SHHHHHHHHHHHHH
T ss_pred ccCCCCcc---hhhhCC-ceEEeCC-CHHHHHHHHHHHHh
Confidence 64423322 235678 8999988 99999999988874
No 167
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=64.23 E-value=11 Score=38.44 Aligned_cols=111 Identities=14% Similarity=0.074 Sum_probs=61.2
Q ss_pred cCcCCCCCcEEEEEeCCHHHHHHHHHHHhhCCCEEE-EEC-CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC
Q 008619 10 AWKDFPKGLRVLLLDQDSSAAAELKFKLEAMDYIVS-TFY-NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK 87 (559)
Q Consensus 10 ~~~~~p~glrVLIVDDD~~~~~~L~~~L~~~gy~V~-ta~-~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir 87 (559)
.++.||+.+||.||.--..-...+...|...+++++ .|. +.+.|-+...+ ....-+. .+--++++. .
T Consensus 19 ~~~~Mm~~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~--~~~~~~~--------~~~~~ll~~-~ 87 (361)
T 3u3x_A 19 YFQSMMDELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAV--YADARRI--------ATAEEILED-E 87 (361)
T ss_dssp -------CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHH--SSSCCEE--------SCHHHHHTC-T
T ss_pred hhhhhccCcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHH--cCCCccc--------CCHHHHhcC-C
Confidence 356677789999999764443445555556788877 444 33334333333 1100011 123334432 2
Q ss_pred CCcEEEEecC--CCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHH
Q 008619 88 DLPTIITSNI--HCLSTMMKCIALGAVEFLRKPL--SEDKLRNLWQHV 131 (559)
Q Consensus 88 diPVImLSa~--~d~e~v~kAi~~GA~DYLvKPi--s~eeL~~iIq~v 131 (559)
++-+|+++.. .-.+.+..|+++|..=|+-||+ +.++...+++.+
T Consensus 88 ~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a 135 (361)
T 3u3x_A 88 NIGLIVSAAVSSERAELAIRAMQHGKDVLVDKPGMTSFDQLAKLRRVQ 135 (361)
T ss_dssp TCCEEEECCCHHHHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHH
T ss_pred CCCEEEEeCChHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHH
Confidence 4555555443 3466789999999999999997 667777655543
No 168
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=64.22 E-value=16 Score=36.14 Aligned_cols=33 Identities=9% Similarity=0.030 Sum_probs=19.8
Q ss_pred CcEEEEEe----CCHHHHHHHHHHHhhCCCEEEEECC
Q 008619 17 GLRVLLLD----QDSSAAAELKFKLEAMDYIVSTFYN 49 (559)
Q Consensus 17 glrVLIVD----DD~~~~~~L~~~L~~~gy~V~ta~~ 49 (559)
|+|||++- -+..-...|...|.+.|++|+.++.
T Consensus 4 M~~il~~~~~~~Ghv~~~~~La~~L~~~GheV~v~~~ 40 (402)
T 3ia7_A 4 QRHILFANVQGHGHVYPSLGLVSELARRGHRITYVTT 40 (402)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCEEEEEeCCCCcccccHHHHHHHHHhCCCEEEEEcC
Confidence 45777763 2233334466677777888776554
No 169
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=63.57 E-value=43 Score=34.27 Aligned_cols=77 Identities=17% Similarity=0.163 Sum_probs=54.1
Q ss_pred HhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCC-----CCC----------CCHHHHHHHcC---CCcEEEEecC
Q 008619 37 LEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTT-----SNT----------DGSFKFLETAK---DLPTIITSNI 97 (559)
Q Consensus 37 L~~~gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~M-----Pd~----------mdG~eLLe~Ir---diPVImLSa~ 97 (559)
++..|..|. .+.+.++|...... ..|.|+++-.. ... .+.+++++.++ ++|||+...-
T Consensus 141 ~~~~g~~v~~~v~t~~~a~~a~~~---GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~~iPViaaGGI 217 (369)
T 3bw2_A 141 LRRAGTLTLVTATTPEEARAVEAA---GADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAVDIPVVAAGGI 217 (369)
T ss_dssp HHHTTCEEEEEESSHHHHHHHHHT---TCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHHCSSCEEEESSC
T ss_pred HHHCCCeEEEECCCHHHHHHHHHc---CCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHhcCceEEEECCC
Confidence 334566655 77888887665544 58999885421 110 12277777775 7999988877
Q ss_pred CCHHHHHHHHHcCCCEEEe
Q 008619 98 HCLSTMMKCIALGAVEFLR 116 (559)
Q Consensus 98 ~d~e~v~kAi~~GA~DYLv 116 (559)
.+.+.+.+++..||+.+.+
T Consensus 218 ~~~~~~~~~l~~GAd~V~v 236 (369)
T 3bw2_A 218 MRGGQIAAVLAAGADAAQL 236 (369)
T ss_dssp CSHHHHHHHHHTTCSEEEE
T ss_pred CCHHHHHHHHHcCCCEEEE
Confidence 7899999999999988876
No 170
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=63.15 E-value=44 Score=32.66 Aligned_cols=67 Identities=12% Similarity=0.106 Sum_probs=49.4
Q ss_pred EECCHHHHHHHhhcCCCCeeEEEEecCCCCC------CCHHHHHHHcC-----CCcEEEEecCCCHHHHHHHHHcCCCEE
Q 008619 46 TFYNENEALSAFSDKPENFHVAIVEVTTSNT------DGSFKFLETAK-----DLPTIITSNIHCLSTMMKCIALGAVEF 114 (559)
Q Consensus 46 ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~------mdG~eLLe~Ir-----diPVImLSa~~d~e~v~kAi~~GA~DY 114 (559)
.|.+.+|+...... .+|+|.+.--.+.. .-|++.++.+. ++|||.+.+- +.+.+.+++.+||+++
T Consensus 141 S~ht~~Ea~~A~~~---GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~~~~iPvvAiGGI-~~~ni~~~~~aGa~gv 216 (243)
T 3o63_A 141 STHDPDQVAAAAAG---DADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELGGDDKPWFAIGGI-NAQRLPAVLDAGARRI 216 (243)
T ss_dssp EECSHHHHHHHHHS---SCSEEEECCSSCCCC-----CCCHHHHHHHHTC---CCCEEEESSC-CTTTHHHHHHTTCCCE
T ss_pred eCCCHHHHHHHhhC---CCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhccCCCCEEEecCC-CHHHHHHHHHcCCCEE
Confidence 78999998876655 58999986543320 12566666552 6899999876 5677889999999999
Q ss_pred Ee
Q 008619 115 LR 116 (559)
Q Consensus 115 Lv 116 (559)
.+
T Consensus 217 av 218 (243)
T 3o63_A 217 VV 218 (243)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 171
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=62.93 E-value=13 Score=35.43 Aligned_cols=46 Identities=13% Similarity=0.140 Sum_probs=33.8
Q ss_pred HHHHHHcC---CCcEEEEecCCC------HHHHHHHHHcCCCEEEeCCCCHHHHH
Q 008619 80 FKFLETAK---DLPTIITSNIHC------LSTMMKCIALGAVEFLRKPLSEDKLR 125 (559)
Q Consensus 80 ~eLLe~Ir---diPVImLSa~~d------~e~v~kAi~~GA~DYLvKPis~eeL~ 125 (559)
+++++.++ ++||++++.... .+.+..++++||+.+++-.+..++..
T Consensus 69 ~~~i~~i~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~~~~~~~~ 123 (248)
T 1geq_A 69 FWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAK 123 (248)
T ss_dssp HHHHHHHHTTCCCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGHH
T ss_pred HHHHHHHHhhCCCCEEEEeccchhhhcCHHHHHHHHHHCCCCEEEECCCChhhHH
Confidence 66777775 689998874333 56788899999999999766655443
No 172
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=62.52 E-value=66 Score=31.31 Aligned_cols=67 Identities=10% Similarity=0.069 Sum_probs=44.1
Q ss_pred HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Q 008619 51 NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQ 129 (559)
Q Consensus 51 ~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq 129 (559)
.+....+.. .|++|+.- |.-+++.+. .+|||+....... .+.+..| +++++.+ +.++|.+.+.
T Consensus 274 ~~~~~~~~~----ad~~v~~s-------g~~~lEA~a~G~Pvi~~~~~~~~---~e~v~~g-~g~~v~~-d~~~la~~i~ 337 (375)
T 3beo_A 274 IDFHNVAAR----SYLMLTDS-------GGVQEEAPSLGVPVLVLRDTTER---PEGIEAG-TLKLAGT-DEETIFSLAD 337 (375)
T ss_dssp HHHHHHHHT----CSEEEECC-------HHHHHHHHHHTCCEEECSSCCSC---HHHHHTT-SEEECCS-CHHHHHHHHH
T ss_pred HHHHHHHHh----CcEEEECC-------CChHHHHHhcCCCEEEecCCCCC---ceeecCC-ceEEcCC-CHHHHHHHHH
Confidence 344455544 57777532 333666664 8999876331222 3346788 8999876 9999999998
Q ss_pred HHHH
Q 008619 130 HVVH 133 (559)
Q Consensus 130 ~vlr 133 (559)
.++.
T Consensus 338 ~ll~ 341 (375)
T 3beo_A 338 ELLS 341 (375)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8874
No 173
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=61.28 E-value=36 Score=38.46 Aligned_cols=113 Identities=11% Similarity=0.024 Sum_probs=73.7
Q ss_pred CcEEEEE----eCCHHHHHHH----HHHHhhCCCEEEE---ECCHHHHHHHhhcCCCCeeEEEEecCCCC---CCCHH-H
Q 008619 17 GLRVLLL----DQDSSAAAEL----KFKLEAMDYIVST---FYNENEALSAFSDKPENFHVAIVEVTTSN---TDGSF-K 81 (559)
Q Consensus 17 glrVLIV----DDD~~~~~~L----~~~L~~~gy~V~t---a~~~~eAL~~Lre~~~~pDLVIvDv~MPd---~mdG~-e 81 (559)
..+||+. |-+..=...+ ..+|+..||+|+- ....++.++.+.+ ..+|+|.+-..|.. .+..+ +
T Consensus 602 kGKVVIATVgGD~HDIGKklVaNIVa~~LE~aGFEVIDLGvdVPpEeIVeAA~E--edADVVGLSsLLTt~dihL~~Mke 679 (763)
T 3kp1_A 602 PLKIVAATVGEDEHSVGLREVIDIKHGGIEKYGVEVHYLGTSVPVEKLVDAAIE--LKADAILASTIISHDDIHYKNMKR 679 (763)
T ss_dssp CCEEEEEEBTTCCCCHHHHHTTSTTTTCGGGGTCEEEECCSSBCHHHHHHHHHH--TTCSEEEEECCCCGGGHHHHHHHH
T ss_pred CCEEEEEeCCCChhhhhhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEeccccCchhhHHHHHH
Confidence 3578877 4343333322 5678889999984 4578999999999 78999999887764 01222 2
Q ss_pred HHHHcC-----C-CcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008619 82 FLETAK-----D-LPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 82 LLe~Ir-----d-iPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
+++.++ + ++||+=-..-..+. +.+.||+.|..-.....++...|...++.
T Consensus 680 vIelLrE~GlrDkIkVIVGGa~~tqd~---AkeIGADa~f~DATeAVeVA~~Ll~~l~e 735 (763)
T 3kp1_A 680 IHELAVEKGIRDKIMIGCGGTQVTPEV---AVKQGVDAGFGRGSKGIHVATFLVKKRRE 735 (763)
T ss_dssp HHHHHHHTTCTTTSEEEEECTTCCHHH---HHTTTCSEEECTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHH---HHHcCCcEEECCcchHHHHHHHHHHHHHH
Confidence 444443 2 45544333334333 45899999999888888777766655544
No 174
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=61.20 E-value=43 Score=33.74 Aligned_cols=79 Identities=14% Similarity=0.047 Sum_probs=55.4
Q ss_pred HHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCC----CCCHHHHHHHcC---CCcEEEEecCCCHHHHHHH
Q 008619 35 FKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSN----TDGSFKFLETAK---DLPTIITSNIHCLSTMMKC 106 (559)
Q Consensus 35 ~~L~~~gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd----~mdG~eLLe~Ir---diPVImLSa~~d~e~v~kA 106 (559)
+.++..|+.|. .+.+.++|...... ..|.|+++-.-.+ ....++++..++ ++|||+...-.+.+.+.++
T Consensus 104 ~~l~~~g~~v~~~v~~~~~a~~~~~~---GaD~i~v~g~~~GG~~g~~~~~~ll~~i~~~~~iPViaaGGI~~~~~~~~a 180 (332)
T 2z6i_A 104 ERFHEAGIIVIPVVPSVALAKRMEKI---GADAVIAEGMEAGGHIGKLTTMTLVRQVATAISIPVIAAGGIADGEGAAAG 180 (332)
T ss_dssp HHHHHTTCEEEEEESSHHHHHHHHHT---TCSCEEEECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHH
T ss_pred HHHHHcCCeEEEEeCCHHHHHHHHHc---CCCEEEEECCCCCCCCCCccHHHHHHHHHHhcCCCEEEECCCCCHHHHHHH
Confidence 34444577666 67777777554443 5898888632111 023477777775 7999988888889999999
Q ss_pred HHcCCCEEEe
Q 008619 107 IALGAVEFLR 116 (559)
Q Consensus 107 i~~GA~DYLv 116 (559)
+..||+...+
T Consensus 181 l~~GAdgV~v 190 (332)
T 2z6i_A 181 FMLGAEAVQV 190 (332)
T ss_dssp HHTTCSEEEE
T ss_pred HHcCCCEEEe
Confidence 9999998876
No 175
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=59.90 E-value=11 Score=37.42 Aligned_cols=64 Identities=13% Similarity=0.087 Sum_probs=46.6
Q ss_pred eeEEEEecCCCCCCCHHHHHHHcC-CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008619 64 FHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 64 pDLVIvDv~MPd~mdG~eLLe~Ir-diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
.|++|+-.. .+ .-|..+++.+. .+|||+.....- .+.+..|-++++..|-+.++|.+.+..++.
T Consensus 285 adv~v~ps~-~e-~~~~~~~EAma~G~PvI~~~~~~~----~e~v~~~~~g~~~~~~d~~~la~~i~~l~~ 349 (394)
T 2jjm_A 285 SDLMLLLSE-KE-SFGLVLLEAMACGVPCIGTRVGGI----PEVIQHGDTGYLCEVGDTTGVADQAIQLLK 349 (394)
T ss_dssp CSEEEECCS-CC-SCCHHHHHHHHTTCCEEEECCTTS----TTTCCBTTTEEEECTTCHHHHHHHHHHHHH
T ss_pred CCEEEeccc-cC-CCchHHHHHHhcCCCEEEecCCCh----HHHhhcCCceEEeCCCCHHHHHHHHHHHHc
Confidence 578777543 34 45778888875 899886543322 234566789999999999999999988875
No 176
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=59.88 E-value=1.2e+02 Score=31.45 Aligned_cols=96 Identities=11% Similarity=0.081 Sum_probs=60.9
Q ss_pred CcEEEEEeCC----HHHHHHHHHHHhhC-CCEEE--EECCHHHHHHHhhcCCCCeeEEEEecCCCCC-----------CC
Q 008619 17 GLRVLLLDQD----SSAAAELKFKLEAM-DYIVS--TFYNENEALSAFSDKPENFHVAIVEVTTSNT-----------DG 78 (559)
Q Consensus 17 glrVLIVDDD----~~~~~~L~~~L~~~-gy~V~--ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~-----------md 78 (559)
+..++.||-. ....+.++.+-+.. +..|+ .+.+.++|..++.. ..|.|++..+ ++. ..
T Consensus 112 GvdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a~~a---GaD~I~Vg~g-~G~~~~tr~~~g~g~p 187 (361)
T 3r2g_A 112 GADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLASC---GADIIKAGIG-GGSVCSTRIKTGFGVP 187 (361)
T ss_dssp TCCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHT---TCSEEEECCS-SSSCHHHHHHHCCCCC
T ss_pred CCCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHHHHc---CCCEEEEcCC-CCcCccccccCCccHH
Confidence 4567888632 22233333332232 55555 48899998877665 5899988543 210 11
Q ss_pred HHHHHHHcCCC--cEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008619 79 SFKFLETAKDL--PTIITSNIHCLSTMMKCIALGAVEFLR 116 (559)
Q Consensus 79 G~eLLe~Irdi--PVImLSa~~d~e~v~kAi~~GA~DYLv 116 (559)
.+..+..+.+. |||.-..-.+...+.+++.+||+...+
T Consensus 188 ~l~aI~~~~~~~~PVIAdGGI~~~~di~kALa~GAd~V~i 227 (361)
T 3r2g_A 188 MLTCIQDCSRADRSIVADGGIKTSGDIVKALAFGADFVMI 227 (361)
T ss_dssp HHHHHHHHTTSSSEEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 24444444433 888888888899999999999998876
No 177
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=59.66 E-value=65 Score=33.12 Aligned_cols=100 Identities=8% Similarity=0.060 Sum_probs=53.7
Q ss_pred cEEEEE-eCCHHHHHHHHHHHhhC-CCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CCcEEEE
Q 008619 18 LRVLLL-DQDSSAAAELKFKLEAM-DYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIIT 94 (559)
Q Consensus 18 lrVLIV-DDD~~~~~~L~~~L~~~-gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-diPVImL 94 (559)
++++++ .+++..++.++..+... .+.++-.-...+...++.. .|+||++- .|.. ++... .+|+|++
T Consensus 258 ~~~v~~~~~~~~~~~~l~~~~~~~~~v~l~~~l~~~~~~~l~~~----ad~vv~~S------Gg~~-~EA~a~g~PvV~~ 326 (403)
T 3ot5_A 258 TELVYPMHLNPAVREKAMAILGGHERIHLIEPLDAIDFHNFLRK----SYLVFTDS------GGVQ-EEAPGMGVPVLVL 326 (403)
T ss_dssp EEEEEECCSCHHHHHHHHHHHTTCTTEEEECCCCHHHHHHHHHH----EEEEEECC------HHHH-HHGGGTTCCEEEC
T ss_pred ceEEEecCCCHHHHHHHHHHhCCCCCEEEeCCCCHHHHHHHHHh----cCEEEECC------ccHH-HHHHHhCCCEEEe
Confidence 444444 34444444454444322 1222222223344444444 46666542 2443 45443 8999987
Q ss_pred ecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008619 95 SNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 95 Sa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
-...+.. +.++.| ..+++.+ +.++|...+..++.
T Consensus 327 ~~~~~~~---e~v~~g-~~~lv~~-d~~~l~~ai~~ll~ 360 (403)
T 3ot5_A 327 RDTTERP---EGIEAG-TLKLIGT-NKENLIKEALDLLD 360 (403)
T ss_dssp CSSCSCH---HHHHHT-SEEECCS-CHHHHHHHHHHHHH
T ss_pred cCCCcch---hheeCC-cEEEcCC-CHHHHHHHHHHHHc
Confidence 3333322 235778 5677765 99999999988774
No 178
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=59.62 E-value=65 Score=30.46 Aligned_cols=67 Identities=10% Similarity=0.176 Sum_probs=46.4
Q ss_pred CHHHHHHHhhcCCCCee-EEEEecCCCCCCCH--HHHHHHcC---CCcEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008619 49 NENEALSAFSDKPENFH-VAIVEVTTSNTDGS--FKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (559)
Q Consensus 49 ~~~eAL~~Lre~~~~pD-LVIvDv~MPd~mdG--~eLLe~Ir---diPVImLSa~~d~e~v~kAi~~GA~DYLvK 117 (559)
+..+.++.+.+ ..++ ++++++.-.....| +++++.++ ++|||+..+-.+.+.+.++++.||+++++=
T Consensus 152 ~~~e~~~~~~~--~G~~~i~~~~~~~~g~~~g~~~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~~Gadgv~vG 224 (253)
T 1thf_D 152 LLRDWVVEVEK--RGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAA 224 (253)
T ss_dssp EHHHHHHHHHH--TTCSEEEEEETTTTTSCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred CHHHHHHHHHH--CCCCEEEEEeccCCCCCCCCCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCChHHHHH
Confidence 34565566656 4567 44455542221223 77887775 799999888888899999999999998864
No 179
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=58.74 E-value=7.5 Score=35.75 Aligned_cols=115 Identities=16% Similarity=0.133 Sum_probs=66.3
Q ss_pred CCCCcEEEEEeCCH-----H-HHHHHHHHHhhCCCEEEE---E---------C---C----HHHHHHHhhcCCCCeeEEE
Q 008619 14 FPKGLRVLLLDQDS-----S-AAAELKFKLEAMDYIVST---F---------Y---N----ENEALSAFSDKPENFHVAI 68 (559)
Q Consensus 14 ~p~glrVLIVDDD~-----~-~~~~L~~~L~~~gy~V~t---a---------~---~----~~eAL~~Lre~~~~pDLVI 68 (559)
++++++|.|..... . ..+.+...|+..| .|.+ + . + .+.-++.|++ .|+||
T Consensus 8 ~~~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~----aD~vv 82 (165)
T 2khz_A 8 EQAPCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQ----ADVVV 82 (165)
T ss_dssp SCCCCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHH----CSEEE
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHHh----CCEEE
Confidence 44567899884332 1 4577888888888 7731 0 0 1 1222355555 79999
Q ss_pred EecCCCCCCCHHHHHHHc-CCCcEEEEecCC---CHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008619 69 VEVTTSNTDGSFKFLETA-KDLPTIITSNIH---CLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 69 vDv~MPd~mdG~eLLe~I-rdiPVImLSa~~---d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
.++.-++.+.++|+--.. ...|||++.... ....+..+...+ ..|-+..++.++|..++...+..
T Consensus 83 a~~~~~d~Gt~~EiGyA~algKPVi~l~~~~~~~~~n~M~~g~~~~-~~~~~~~y~~~el~~~l~~~~~~ 151 (165)
T 2khz_A 83 AEVTQPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAMIRGAADG-SRFQVWDYAEGEVETMLDRYFEA 151 (165)
T ss_dssp EECSSCCHHHHHHHHHHHHTCSSEEEEECTTTTCCCCHHHHHTCCS-SSEEEEECCTTTHHHHHHHHHHT
T ss_pred EECCCCCCCHHHHHHHHHHCCCEEEEEEcCCCCCcchhhhcccCcc-ceeEEEecCHHHHHHHHHHHHHh
Confidence 988744412346665443 489999997655 222333332221 22333334888888887776643
No 180
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=58.44 E-value=20 Score=27.37 Aligned_cols=47 Identities=21% Similarity=0.310 Sum_probs=37.4
Q ss_pred ceecCHHHHHHHHHHHHHhCCCCCCChHHHhhcCCCCCCHHHHHHhhhhhh
Q 008619 319 KVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYR 369 (559)
Q Consensus 319 r~~Wt~~lh~~Fv~av~~lg~~~a~pk~il~~m~v~~lt~~~v~shlQkyr 369 (559)
|-.||+|=..+|++||+++|..+ =+.|-+.| +|=|..+++.|-++|-
T Consensus 8 ~~~WT~eED~~L~~~v~~~G~~~--W~~Ia~~~--~~Rt~~qcr~r~~~~l 54 (60)
T 1x41_A 8 DPSWTAQEEMALLEAVMDCGFGN--WQDVANQM--CTKTKEECEKHYMKYF 54 (60)
T ss_dssp CSSSCHHHHHHHHHHHHHTCTTC--HHHHHHHH--TTSCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCc--HHHHHHHh--CCCCHHHHHHHHHHHc
Confidence 44799999999999999999532 24566666 6889999999887774
No 181
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=57.65 E-value=59 Score=32.42 Aligned_cols=105 Identities=13% Similarity=0.098 Sum_probs=66.7
Q ss_pred CcEEEEEeCC----HHHHHHHHHHHhhCCC--EEEEEC-----CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHH
Q 008619 17 GLRVLLLDQD----SSAAAELKFKLEAMDY--IVSTFY-----NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLET 85 (559)
Q Consensus 17 glrVLIVDDD----~~~~~~L~~~L~~~gy--~V~ta~-----~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~ 85 (559)
..+++|+.+. +.....++.+.+..+. .|.... +.++..+.+.. .|++|+--. .+ .-|..+++.
T Consensus 262 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~~~~~~V~~~G~~~~~~~~~~~~~~~~----ad~~v~ps~-~E-~~~~~~lEA 335 (416)
T 2x6q_A 262 GVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRA----SDVILQMSI-RE-GFGLTVTEA 335 (416)
T ss_dssp TCEEEEEECCCTTCHHHHHHHHHHHHHHTTCTTEEEEEGGGTCCHHHHHHHHHH----CSEEEECCS-SC-SSCHHHHHH
T ss_pred CeEEEEEecCcccchhHHHHHHHHHHHhCCCCcEEEecccCCCCHHHHHHHHHh----CCEEEECCC-cC-CCccHHHHH
Confidence 4677888775 3334445555544332 233322 23456666655 577776443 34 457788888
Q ss_pred cC-CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008619 86 AK-DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 86 Ir-diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
+. .+|||+.. . ....+.+..|.++++.. +.++|.+.|..++.
T Consensus 336 ma~G~PvI~~~-~---~g~~e~i~~~~~g~l~~--d~~~la~~i~~ll~ 378 (416)
T 2x6q_A 336 MWKGKPVIGRA-V---GGIKFQIVDGETGFLVR--DANEAVEVVLYLLK 378 (416)
T ss_dssp HHTTCCEEEES-C---HHHHHHCCBTTTEEEES--SHHHHHHHHHHHHH
T ss_pred HHcCCCEEEcc-C---CCChhheecCCCeEEEC--CHHHHHHHHHHHHh
Confidence 75 89988643 2 34556677888999996 99999999888774
No 182
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=57.18 E-value=11 Score=38.14 Aligned_cols=57 Identities=12% Similarity=0.043 Sum_probs=44.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCC
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTT 73 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~M 73 (559)
+-++.+||-++...+.|++-+....-..+...++.+++..+.....++|||++|---
T Consensus 113 ~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPY 169 (283)
T 2oo3_A 113 QDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSY 169 (283)
T ss_dssp TSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCC
T ss_pred CCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCC
Confidence 458999999999999999988765433446678889988876644579999999743
No 183
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=56.84 E-value=36 Score=31.74 Aligned_cols=73 Identities=16% Similarity=0.138 Sum_probs=51.0
Q ss_pred CCEEE-EECCHHHHHHHhhcCCCCeeEEEEecC-C----CCCC--C--HHHHHHHcC---CCcEEEEecCCCHHHHHHHH
Q 008619 41 DYIVS-TFYNENEALSAFSDKPENFHVAIVEVT-T----SNTD--G--SFKFLETAK---DLPTIITSNIHCLSTMMKCI 107 (559)
Q Consensus 41 gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~-M----Pd~m--d--G~eLLe~Ir---diPVImLSa~~d~e~v~kAi 107 (559)
|..+. .+.+.+++...... ..|+|.+... . .+ . . ++++++.++ ++|||+...-.+.+.+.+++
T Consensus 119 ~~~v~~~~~t~~e~~~~~~~---G~d~i~~~~~g~t~~~~~-~~~~~~~~~~~~~~~~~~~ipvia~GGI~~~~~~~~~~ 194 (223)
T 1y0e_A 119 NVEIMADIATVEEAKNAARL---GFDYIGTTLHGYTSYTQG-QLLYQNDFQFLKDVLQSVDAKVIAEGNVITPDMYKRVM 194 (223)
T ss_dssp TSEEEEECSSHHHHHHHHHT---TCSEEECTTTTSSTTSTT-CCTTHHHHHHHHHHHHHCCSEEEEESSCCSHHHHHHHH
T ss_pred CceEEecCCCHHHHHHHHHc---CCCEEEeCCCcCcCCCCC-CCCCcccHHHHHHHHhhCCCCEEEecCCCCHHHHHHHH
Confidence 56554 67788888765444 4688765321 0 11 1 2 355666664 79999888887999999999
Q ss_pred HcCCCEEEeC
Q 008619 108 ALGAVEFLRK 117 (559)
Q Consensus 108 ~~GA~DYLvK 117 (559)
+.||+.+++=
T Consensus 195 ~~Gad~v~vG 204 (223)
T 1y0e_A 195 DLGVHCSVVG 204 (223)
T ss_dssp HTTCSEEEEC
T ss_pred HcCCCEEEEC
Confidence 9999999874
No 184
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=56.77 E-value=62 Score=32.34 Aligned_cols=134 Identities=11% Similarity=0.121 Sum_probs=73.0
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcE
Q 008619 14 FPKGLRVLLLDQDSSAAAELKFKLEAM-DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPT 91 (559)
Q Consensus 14 ~p~glrVLIVDDD~~~~~~L~~~L~~~-gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPV 91 (559)
|++.+||.||.--..-.. +...|... +++++ .|....+..+.+.+ .+.+ +...+--++++. .++-+
T Consensus 2 M~~~~~vgiiG~G~~g~~-~~~~l~~~~~~~lvav~d~~~~~~~~~~~---~~g~-------~~~~~~~~~l~~-~~~D~ 69 (354)
T 3db2_A 2 MYNPVGVAAIGLGRWAYV-MADAYTKSEKLKLVTCYSRTEDKREKFGK---RYNC-------AGDATMEALLAR-EDVEM 69 (354)
T ss_dssp CCCCEEEEEECCSHHHHH-HHHHHTTCSSEEEEEEECSSHHHHHHHHH---HHTC-------CCCSSHHHHHHC-SSCCE
T ss_pred CCCcceEEEEccCHHHHH-HHHHHHhCCCcEEEEEECCCHHHHHHHHH---HcCC-------CCcCCHHHHhcC-CCCCE
Confidence 445689999998775554 44455554 78877 44433333333322 1111 110233444432 23444
Q ss_pred EEEec--CCCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHHHHHHhcCCCCccCCCcHHHHHHHHHHhh
Q 008619 92 IITSN--IHCLSTMMKCIALGAVEFLRKPL--SEDKLRNLWQHVVHKAFNAGGSALSDSLKPVKESVVSMLHL 160 (559)
Q Consensus 92 ImLSa--~~d~e~v~kAi~~GA~DYLvKPi--s~eeL~~iIq~vlrr~~~~~~~~~s~~Lt~re~eVl~li~~ 160 (559)
|+++. ....+.+..|+++|..=|+-||+ +.++....++.+-+.... .......++.+.-..+.+++..
T Consensus 70 V~i~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~~~~-~~v~~~~R~~p~~~~~k~~i~~ 141 (354)
T 3db2_A 70 VIITVPNDKHAEVIEQCARSGKHIYVEKPISVSLDHAQRIDQVIKETGVK-FLCGHSSRRLGALRKMKEMIDT 141 (354)
T ss_dssp EEECSCTTSHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHCCC-EEEECGGGGSHHHHHHHHHHHT
T ss_pred EEEeCChHHHHHHHHHHHHcCCEEEEccCCCCCHHHHHHHHHHHHHcCCe-EEEeechhcCHHHHHHHHHHhc
Confidence 44443 34567788999999999999996 567777765544332110 0111133455655666666553
No 185
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=56.02 E-value=33 Score=32.39 Aligned_cols=59 Identities=12% Similarity=0.085 Sum_probs=45.3
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhCCC--EEE-EECCHHHHHHHhhcC---CCCeeEEEEecC
Q 008619 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDY--IVS-TFYNENEALSAFSDK---PENFHVAIVEVT 72 (559)
Q Consensus 14 ~p~glrVLIVDDD~~~~~~L~~~L~~~gy--~V~-ta~~~~eAL~~Lre~---~~~pDLVIvDv~ 72 (559)
++.+.+|..+|-++...+..+..+...|+ .|. ...++.+.+..+... ...||+|++|..
T Consensus 92 ~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~I~~d~~ 156 (237)
T 3c3y_A 92 IPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDAD 156 (237)
T ss_dssp SCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEEEEECSC
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCEEEECCc
Confidence 45457999999999999999999988876 244 677888877766421 157999999964
No 186
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=55.87 E-value=35 Score=34.52 Aligned_cols=137 Identities=9% Similarity=0.035 Sum_probs=75.7
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHH-hhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEE
Q 008619 15 PKGLRVLLLDQDSSAAAELKFKL-EAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTI 92 (559)
Q Consensus 15 p~glrVLIVDDD~~~~~~L~~~L-~~~gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVI 92 (559)
|+.+||.||.--..-...+..+. ...+++++ .|....+..+.+.+. ..+..-.. .+--++++.- ++-+|
T Consensus 21 m~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~-~g~~~~~~-------~~~~~ll~~~-~~D~V 91 (357)
T 3ec7_A 21 GMTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDK-YAIEAKDY-------NDYHDLINDK-DVEVV 91 (357)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHH-HTCCCEEE-------SSHHHHHHCT-TCCEE
T ss_pred CCeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHH-hCCCCeee-------CCHHHHhcCC-CCCEE
Confidence 34589999999877666666665 33478877 444333333333220 11111111 1333444421 34444
Q ss_pred EEe--cCCCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHHHHHHhcCCCCccCCCcHHHHHHHHHHhh
Q 008619 93 ITS--NIHCLSTMMKCIALGAVEFLRKPL--SEDKLRNLWQHVVHKAFNAGGSALSDSLKPVKESVVSMLHL 160 (559)
Q Consensus 93 mLS--a~~d~e~v~kAi~~GA~DYLvKPi--s~eeL~~iIq~vlrr~~~~~~~~~s~~Lt~re~eVl~li~~ 160 (559)
+++ ...-.+.+..|+++|..=|+-||+ +.++....++.+-+............++.+.-..+.+++..
T Consensus 92 ~i~tp~~~h~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~~v~~~~R~~p~~~~~k~~i~~ 163 (357)
T 3ec7_A 92 IITASNEAHADVAVAALNANKYVFCEKPLAVTAADCQRVIEAEQKNGKRMVQIGFMRRYDKGYVQLKNIIDS 163 (357)
T ss_dssp EECSCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHTSCCEEEECGGGGSHHHHHHHHHHHH
T ss_pred EEcCCcHHHHHHHHHHHHCCCCEEeecCccCCHHHHHHHHHHHHHhCCeEEEEeecccCCHHHHHHHHHHhc
Confidence 443 344567789999999999999997 67777776665433221110111234556666666666654
No 187
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=55.70 E-value=1.5e+02 Score=30.23 Aligned_cols=96 Identities=9% Similarity=0.048 Sum_probs=61.4
Q ss_pred CcEEEEEe----CCHHHHHHHHHHHhhC-CCEEE--EECCHHHHHHHhhcCCCCeeEEEEecCCCCC-----------CC
Q 008619 17 GLRVLLLD----QDSSAAAELKFKLEAM-DYIVS--TFYNENEALSAFSDKPENFHVAIVEVTTSNT-----------DG 78 (559)
Q Consensus 17 glrVLIVD----DD~~~~~~L~~~L~~~-gy~V~--ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~-----------md 78 (559)
+..++.++ +.....+.++.+-+.. +..|+ .+.+.++|...+.. ..|.|++... ++. ..
T Consensus 132 g~~~i~i~~~~g~~~~~~~~i~~lr~~~~~~~vi~g~v~t~e~A~~a~~a---GaD~I~v~~g-~G~~~~~r~~~g~~~p 207 (351)
T 2c6q_A 132 QVKYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILS---GADIIKVGIG-PGSVCTTRKKTGVGYP 207 (351)
T ss_dssp TCCEEEEECSCTTBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHT---TCSEEEECSS-CSTTBCHHHHHCBCCC
T ss_pred CCCEEEEEecCCCcHHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHh---CCCEEEECCC-CCcCcCccccCCCCcc
Confidence 45666665 2333455555554554 55443 68889999877665 5898877432 110 11
Q ss_pred HHHHHHHc----C--CCcEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008619 79 SFKFLETA----K--DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (559)
Q Consensus 79 G~eLLe~I----r--diPVImLSa~~d~e~v~kAi~~GA~DYLv 116 (559)
-+.++..+ . ++|||.-..-.+...+.+|+.+||+...+
T Consensus 208 ~~~~l~~v~~~~~~~~ipvIa~GGI~~g~di~kAlalGA~~V~v 251 (351)
T 2c6q_A 208 QLSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFGAGADFVML 251 (351)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCceec
Confidence 12233222 1 69999888888999999999999998765
No 188
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=55.52 E-value=45 Score=31.86 Aligned_cols=61 Identities=8% Similarity=0.072 Sum_probs=45.8
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhCCC--EEE-EECCHHHHHHHhhcC---CCCeeEEEEecCCC
Q 008619 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDY--IVS-TFYNENEALSAFSDK---PENFHVAIVEVTTS 74 (559)
Q Consensus 14 ~p~glrVLIVDDD~~~~~~L~~~L~~~gy--~V~-ta~~~~eAL~~Lre~---~~~pDLVIvDv~MP 74 (559)
++.+.+|..||-++...+..+..+...|+ .|. ...++.+.+..+... ...||+|++|....
T Consensus 101 ~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~V~~d~~~~ 167 (247)
T 1sui_A 101 IPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKD 167 (247)
T ss_dssp SCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSEEEECSCST
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEEEEEcCchH
Confidence 45457999999999999999999988776 344 667888877666311 15799999997543
No 189
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=54.89 E-value=34 Score=29.14 Aligned_cols=51 Identities=20% Similarity=0.291 Sum_probs=30.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEec
Q 008619 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEV 71 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv 71 (559)
.+|+|+.--. +-..+...|...|++|+.+..-.+.++.+.+ ....++..|.
T Consensus 7 ~~v~I~G~G~-iG~~la~~L~~~g~~V~~id~~~~~~~~~~~--~~~~~~~gd~ 57 (141)
T 3llv_A 7 YEYIVIGSEA-AGVGLVRELTAAGKKVLAVDKSKEKIELLED--EGFDAVIADP 57 (141)
T ss_dssp CSEEEECCSH-HHHHHHHHHHHTTCCEEEEESCHHHHHHHHH--TTCEEEECCT
T ss_pred CEEEEECCCH-HHHHHHHHHHHCCCeEEEEECCHHHHHHHHH--CCCcEEECCC
Confidence 4677777654 4556666666667777765555555555554 3344444443
No 190
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=54.87 E-value=76 Score=34.26 Aligned_cols=98 Identities=13% Similarity=0.169 Sum_probs=62.5
Q ss_pred CcEEEEEeC----CHHHHHHHHHHHhhCC-CEEE--EECCHHHHHHHhhcCCCCeeEEEEecCCCCC----------CCH
Q 008619 17 GLRVLLLDQ----DSSAAAELKFKLEAMD-YIVS--TFYNENEALSAFSDKPENFHVAIVEVTTSNT----------DGS 79 (559)
Q Consensus 17 glrVLIVDD----D~~~~~~L~~~L~~~g-y~V~--ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~----------mdG 79 (559)
+..+++||. ...+.+.++.+-+.++ ..|+ .+.+.+.|..++.. ..|.|++.+.-... ...
T Consensus 268 Gvd~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~g~v~t~e~a~~~~~a---Gad~i~vg~g~gsi~~~~~~~g~g~p~ 344 (511)
T 3usb_A 268 SVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEA---GANVVKVGIGPGSICTTRVVAGVGVPQ 344 (511)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHH---TCSEEEECSSCSTTCCHHHHHCCCCCH
T ss_pred ccceEEecccccchhhhhhHHHHHHHhCCCceEEeeeeccHHHHHHHHHh---CCCEEEECCCCccccccccccCCCCCc
Confidence 566777763 2334444555544543 3444 67888888777665 57888874421110 112
Q ss_pred HHHHHHc----C--CCcEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008619 80 FKFLETA----K--DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (559)
Q Consensus 80 ~eLLe~I----r--diPVImLSa~~d~e~v~kAi~~GA~DYLvK 117 (559)
+.++..+ + ++|||.--+-.+...+.+|+.+||+..++=
T Consensus 345 ~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GA~~V~vG 388 (511)
T 3usb_A 345 LTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVMLG 388 (511)
T ss_dssp HHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHhCchhheec
Confidence 4444333 2 599998888889999999999999999874
No 191
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}
Probab=54.72 E-value=25 Score=34.72 Aligned_cols=101 Identities=13% Similarity=-0.006 Sum_probs=60.6
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHH--------HHHhhcCCCCeeEEEEe---cC------CC-
Q 008619 13 DFPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEA--------LSAFSDKPENFHVAIVE---VT------TS- 74 (559)
Q Consensus 13 ~~p~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eA--------L~~Lre~~~~pDLVIvD---v~------MP- 74 (559)
+|+++|+|++++.+...... ...|.+.|++|....-..+. .+.+.+.-...|+||+- +. -+
T Consensus 3 ~~~~~mki~v~~~~~~~~~~-~~~L~~~g~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~s~~ 81 (300)
T 2rir_A 3 AMLTGLKIAVIGGDARQLEI-IRKLTEQQADIYLVGFDQLDHGFTGAVKCNIDEIPFQQIDSIILPVSATTGEGVVSTVF 81 (300)
T ss_dssp CCCCSCEEEEESBCHHHHHH-HHHHHHTTCEEEEESCTTSSCCCTTEEECCGGGSCGGGCSEEECCSSCEETTTEECBSS
T ss_pred ccccCCEEEEECCCHHHHHH-HHHHHhCCCEEEEEeccccccccccceeccchHHHHhcCCEEEeccccccCCccccccc
Confidence 46778999999998766554 45567789998865321111 00011111247888871 10 00
Q ss_pred -CCCC---HHHHHHHcCCCcEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008619 75 -NTDG---SFKFLETAKDLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (559)
Q Consensus 75 -d~md---G~eLLe~IrdiPVImLSa~~d~e~v~kAi~~GA~DYLv 116 (559)
. .. .-++++.++...+|+ +..+..+.+..+.+.|..-+-.
T Consensus 82 a~-~~~~~~~~~l~~~~~l~~i~-~g~~~~d~~~~~~~~gi~v~~~ 125 (300)
T 2rir_A 82 SN-EEVVLKQDHLDRTPAHCVIF-SGISNAYLENIAAQAKRKLVKL 125 (300)
T ss_dssp CS-SCEECCHHHHHTSCTTCEEE-ESSCCHHHHHHHHHTTCCEEEG
T ss_pred cc-CCccchHHHHhhcCCCCEEE-EecCCHHHHHHHHHCCCEEEee
Confidence 1 11 245677777777776 7777777678888899765443
No 192
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=54.45 E-value=13 Score=36.67 Aligned_cols=74 Identities=18% Similarity=0.059 Sum_probs=48.5
Q ss_pred CCEEE--EECCHHHHHHHhhcCCCCeeEEEE-ecCCCC--CCCHHHHHHHcC---CCcEEEEecCCCHHHHHHHHHcCCC
Q 008619 41 DYIVS--TFYNENEALSAFSDKPENFHVAIV-EVTTSN--TDGSFKFLETAK---DLPTIITSNIHCLSTMMKCIALGAV 112 (559)
Q Consensus 41 gy~V~--ta~~~~eAL~~Lre~~~~pDLVIv-Dv~MPd--~mdG~eLLe~Ir---diPVImLSa~~d~e~v~kAi~~GA~ 112 (559)
|+.+. ++.+.+++.+.... ..|+|+. -..... ...+.++++.++ ++|||+..+-.+.+.+.+++.+||+
T Consensus 126 g~~vi~~~~~~~~~a~~~~~~---gad~v~~~~~~~Gt~~~~~~~~~l~~i~~~~~iPviv~gGI~t~eda~~~~~~GAd 202 (264)
T 1xm3_A 126 GFIVLPYTSDDVVLARKLEEL---GVHAIMPGASPIGSGQGILNPLNLSFIIEQAKVPVIVDAGIGSPKDAAYAMELGAD 202 (264)
T ss_dssp TCCEEEEECSCHHHHHHHHHH---TCSCBEECSSSTTCCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHTTCS
T ss_pred CeEEEEEcCCCHHHHHHHHHh---CCCEEEECCcccCCCCCCCCHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHcCCC
Confidence 66555 55576666555443 3566633 100111 022456666664 8999999988889999999999999
Q ss_pred EEEeC
Q 008619 113 EFLRK 117 (559)
Q Consensus 113 DYLvK 117 (559)
.+++=
T Consensus 203 gViVG 207 (264)
T 1xm3_A 203 GVLLN 207 (264)
T ss_dssp EEEES
T ss_pred EEEEc
Confidence 99874
No 193
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=54.38 E-value=23 Score=35.32 Aligned_cols=105 Identities=12% Similarity=0.060 Sum_probs=68.9
Q ss_pred cEEEEEeCCHH-----HHHHHHHHHhhCCCE---------EEEEC--CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHH
Q 008619 18 LRVLLLDQDSS-----AAAELKFKLEAMDYI---------VSTFY--NENEALSAFSDKPENFHVAIVEVTTSNTDGSFK 81 (559)
Q Consensus 18 lrVLIVDDD~~-----~~~~L~~~L~~~gy~---------V~ta~--~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~e 81 (559)
.+++|+.+.+. +...+++++...|.. |.... +.++..+.+.. .|++|+--. .+ .-|+.
T Consensus 216 ~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~~~~~~~~~~~~~----adv~v~pS~-~E-~~~~~ 289 (413)
T 3oy2_A 216 AKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKIMINRTVLTDERVDMMYNA----CDVIVNCSS-GE-GFGLC 289 (413)
T ss_dssp CCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHHHHTTEEEECSCCCHHHHHHHHHH----CSEEEECCS-CC-SSCHH
T ss_pred cEEEEEeCCcccchhhHHHHHHHHHHHcCcccccccccceeeccCcCCHHHHHHHHHh----CCEEEeCCC-cC-CCCcH
Confidence 56777765432 335566666555433 33222 35667777766 588887433 34 55788
Q ss_pred HHHHcC-CCcEEEEecCCCHHHHHHHHHcCCC---------------EE--EeCCCCHHHHHHHHHHHHH
Q 008619 82 FLETAK-DLPTIITSNIHCLSTMMKCIALGAV---------------EF--LRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 82 LLe~Ir-diPVImLSa~~d~e~v~kAi~~GA~---------------DY--LvKPis~eeL~~iIq~vlr 133 (559)
+++.+. .+|||... . ....+.+..|.. ++ +..|-+.++|.++| .++.
T Consensus 290 ~lEAma~G~PvI~s~-~---~g~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~d~~~la~~i-~l~~ 354 (413)
T 3oy2_A 290 SAEGAVLGKPLIISA-V---GGADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGIIDVDDLVEAF-TFFK 354 (413)
T ss_dssp HHHHHTTTCCEEEEC-C---HHHHHHSCTTTSEEECCCEEEECTTTCSSCCEEEECCHHHHHHHH-HHTT
T ss_pred HHHHHHcCCCEEEcC-C---CChHHHHccCcccccccccccccccccCcceeeCCCCHHHHHHHH-HHhc
Confidence 888886 89998642 2 345566777776 88 99999999999999 7764
No 194
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=54.17 E-value=36 Score=33.32 Aligned_cols=80 Identities=13% Similarity=0.140 Sum_probs=51.5
Q ss_pred CHHHHHH---HhhcCCCCeeEEEEecCCCCC-CC--------------------HHHHHHHcC----CCcEEEEecCCC-
Q 008619 49 NENEALS---AFSDKPENFHVAIVEVTTSNT-DG--------------------SFKFLETAK----DLPTIITSNIHC- 99 (559)
Q Consensus 49 ~~~eAL~---~Lre~~~~pDLVIvDv~MPd~-md--------------------G~eLLe~Ir----diPVImLSa~~d- 99 (559)
+.++.++ .|.+ ...|+|.+++-..+. .| .+++++.++ ++|+++|+....
T Consensus 29 ~~~~~~~~~~~l~~--~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pi~~m~y~n~v 106 (262)
T 2ekc_A 29 DYETSLKAFKEVLK--NGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDIPFLLMTYYNPI 106 (262)
T ss_dssp CHHHHHHHHHHHHH--TTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEECCHHHH
T ss_pred ChHHHHHHHHHHHH--cCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCEEEEecCcHH
Confidence 4444444 4444 568999998755431 22 234555554 689999864432
Q ss_pred -----HHHHHHHHHcCCCEEEeCCCCHHHHHHHHHH
Q 008619 100 -----LSTMMKCIALGAVEFLRKPLSEDKLRNLWQH 130 (559)
Q Consensus 100 -----~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~ 130 (559)
...+..+.++|++++++-.+..+++...+..
T Consensus 107 ~~~g~~~f~~~~~~aG~dgvii~dl~~ee~~~~~~~ 142 (262)
T 2ekc_A 107 FRIGLEKFCRLSREKGIDGFIVPDLPPEEAEELKAV 142 (262)
T ss_dssp HHHCHHHHHHHHHHTTCCEEECTTCCHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHcCCCEEEECCCCHHHHHHHHHH
Confidence 3556778999999999988887776554433
No 195
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=53.92 E-value=59 Score=30.75 Aligned_cols=75 Identities=12% Similarity=0.165 Sum_probs=49.6
Q ss_pred HHHHHHHhhcCCCCee-EEEEecCCCCCCCH--HHHHHHcC---CCcEEEEecCCCHHHHHHHHHcCCCEEEeC------
Q 008619 50 ENEALSAFSDKPENFH-VAIVEVTTSNTDGS--FKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLRK------ 117 (559)
Q Consensus 50 ~~eAL~~Lre~~~~pD-LVIvDv~MPd~mdG--~eLLe~Ir---diPVImLSa~~d~e~v~kAi~~GA~DYLvK------ 117 (559)
..+.+..+.+ ..++ +++.+..-.+...| +++++.++ ++|||....-.+.+.+.++++.||+++++=
T Consensus 154 ~~e~~~~~~~--~G~~~i~~~~~~~~g~~~g~~~~~i~~l~~~~~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~~~ 231 (252)
T 1ka9_F 154 AVEWAVKGVE--LGAGEILLTSMDRDGTKEGYDLRLTRMVAEAVGVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFG 231 (252)
T ss_dssp HHHHHHHHHH--HTCCEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTT
T ss_pred HHHHHHHHHH--cCCCEEEEecccCCCCcCCCCHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 3454555555 3456 55555542221223 77887775 799999988888899999999999999863
Q ss_pred CCCHHHHHH
Q 008619 118 PLSEDKLRN 126 (559)
Q Consensus 118 Pis~eeL~~ 126 (559)
+++.++++.
T Consensus 232 ~~~~~~~~~ 240 (252)
T 1ka9_F 232 EIPIPKLKR 240 (252)
T ss_dssp SSCHHHHHH
T ss_pred CCCHHHHHH
Confidence 455555544
No 196
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=53.31 E-value=25 Score=34.18 Aligned_cols=58 Identities=16% Similarity=0.011 Sum_probs=39.0
Q ss_pred CCcEEEEEeCC--------------------HHHHHHHHHHHhhCCCEEEEECCHH-----------------HHHHHhh
Q 008619 16 KGLRVLLLDQD--------------------SSAAAELKFKLEAMDYIVSTFYNEN-----------------EALSAFS 58 (559)
Q Consensus 16 ~glrVLIVDDD--------------------~~~~~~L~~~L~~~gy~V~ta~~~~-----------------eAL~~Lr 58 (559)
++||||+|... ......|...|.+.|++|+.+.... ...+.++
T Consensus 2 ~~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 81 (342)
T 2iuy_A 2 RPLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELGHEVFLLGAPGSPAGRPGLTVVPAGEPEEIERWLR 81 (342)
T ss_dssp -CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTTCEEEEESCTTSCCCSTTEEECSCCSHHHHHHHHH
T ss_pred CccEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCCcceeccCCcHHHHHHHHH
Confidence 35799999876 2355567778888899998765432 4455666
Q ss_pred cCCCCeeEEEEecCCCC
Q 008619 59 DKPENFHVAIVEVTTSN 75 (559)
Q Consensus 59 e~~~~pDLVIvDv~MPd 75 (559)
+ ..||+|++......
T Consensus 82 ~--~~~Dvi~~~~~~~~ 96 (342)
T 2iuy_A 82 T--ADVDVVHDHSGGVI 96 (342)
T ss_dssp H--CCCSEEEECSSSSS
T ss_pred h--cCCCEEEECCchhh
Confidence 6 57888887664433
No 197
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=52.95 E-value=30 Score=31.49 Aligned_cols=70 Identities=6% Similarity=0.076 Sum_probs=50.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEEEEec
Q 008619 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSN 96 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVImLSa 96 (559)
|+|||..-.--+-..|...|.+.|++|+.+....+.+..+.. ....++..|+.-++ . +.+.++-+|+..+
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~--~~~~~~~~D~~d~~-~------~~~~~~d~vi~~a 70 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLG--ATVATLVKEPLVLT-E------ADLDSVDAVVDAL 70 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTC--TTSEEEECCGGGCC-H------HHHTTCSEEEECC
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccC--CCceEEeccccccc-H------hhcccCCEEEECC
Confidence 479999998888888888888889999965554555555554 46788888887666 2 4445666666554
No 198
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=52.33 E-value=22 Score=34.93 Aligned_cols=74 Identities=14% Similarity=0.203 Sum_probs=49.0
Q ss_pred HHHhhcCCCCeeEEEEecCCCCC-CCH--------------------HHHHHHcC----CCcEEEEecCC------CHHH
Q 008619 54 LSAFSDKPENFHVAIVEVTTSNT-DGS--------------------FKFLETAK----DLPTIITSNIH------CLST 102 (559)
Q Consensus 54 L~~Lre~~~~pDLVIvDv~MPd~-mdG--------------------~eLLe~Ir----diPVImLSa~~------d~e~ 102 (559)
++.|.+ ...|+|-+|+-..+. +|| +++++.++ ++||++|+... -...
T Consensus 37 ~~~l~~--~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pv~lm~y~n~v~~~g~~~~ 114 (268)
T 1qop_A 37 IDTLID--AGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVFNNGIDAF 114 (268)
T ss_dssp HHHHHH--TTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECHHHHHTTCHHHH
T ss_pred HHHHHH--CCCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEcccHHHHhhHHHH
Confidence 334444 568999998855431 233 45566654 68999886332 2467
Q ss_pred HHHHHHcCCCEEEeCCCCHHHHHHHHH
Q 008619 103 MMKCIALGAVEFLRKPLSEDKLRNLWQ 129 (559)
Q Consensus 103 v~kAi~~GA~DYLvKPis~eeL~~iIq 129 (559)
+..+.++||++++.-.+..+++...++
T Consensus 115 ~~~~~~aGadgii~~d~~~e~~~~~~~ 141 (268)
T 1qop_A 115 YARCEQVGVDSVLVADVPVEESAPFRQ 141 (268)
T ss_dssp HHHHHHHTCCEEEETTCCGGGCHHHHH
T ss_pred HHHHHHcCCCEEEEcCCCHHHHHHHHH
Confidence 788999999999998887766554443
No 199
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=51.47 E-value=1.1e+02 Score=27.96 Aligned_cols=97 Identities=9% Similarity=-0.022 Sum_probs=56.1
Q ss_pred cEEEEEeCCH--HHHHHHHHHHhhCCCEEEE----ECCHHHHHHHhhcCCCCeeEEEEecCCCC---CCCHHHHHHHcC-
Q 008619 18 LRVLLLDQDS--SAAAELKFKLEAMDYIVST----FYNENEALSAFSDKPENFHVAIVEVTTSN---TDGSFKFLETAK- 87 (559)
Q Consensus 18 lrVLIVDDD~--~~~~~L~~~L~~~gy~V~t----a~~~~eAL~~Lre~~~~pDLVIvDv~MPd---~mdG~eLLe~Ir- 87 (559)
...+++-+.. .....+.+.+++.|..+.. ..+..+.+..+.+ ...|+|.++....+ ...+++.++.++
T Consensus 78 ad~v~v~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~t~~~~~~~~~~--~g~d~i~v~~g~~g~~~~~~~~~~i~~l~~ 155 (211)
T 3f4w_A 78 ADYVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEE--AGADMLAVHTGTDQQAAGRKPIDDLITMLK 155 (211)
T ss_dssp CSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHH--HTCCEEEEECCHHHHHTTCCSHHHHHHHHH
T ss_pred CCEEEEeCCCChhHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHH--cCCCEEEEcCCCcccccCCCCHHHHHHHHH
Confidence 3444444433 3445566666666776553 2344444454444 35788777632100 012455665553
Q ss_pred ---CCcEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008619 88 ---DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (559)
Q Consensus 88 ---diPVImLSa~~d~e~v~kAi~~GA~DYLvK 117 (559)
++||++-.+- ..+.+.+++++||+.+++-
T Consensus 156 ~~~~~~i~~~gGI-~~~~~~~~~~~Gad~vvvG 187 (211)
T 3f4w_A 156 VRRKARIAVAGGI-SSQTVKDYALLGPDVVIVG 187 (211)
T ss_dssp HCSSCEEEEESSC-CTTTHHHHHTTCCSEEEEC
T ss_pred HcCCCcEEEECCC-CHHHHHHHHHcCCCEEEEC
Confidence 6788766555 4778889999999998763
No 200
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=50.12 E-value=17 Score=39.43 Aligned_cols=50 Identities=26% Similarity=0.348 Sum_probs=41.2
Q ss_pred CCceecCHHHHHHHHHHHHHhCCCCCCChHHHhhcCCCCCCHHHHHHhhhhhhhh
Q 008619 317 KMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMH 371 (559)
Q Consensus 317 k~r~~Wt~~lh~~Fv~av~~lg~~~a~pk~il~~m~v~~lt~~~v~shlQkyr~~ 371 (559)
|...+||.+=|..|++|+.+.|-+ =+.|-+.++- =|..+|++|.++||..
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yGkd---w~~IA~~VgT--KT~~Qvk~fy~~~kkr 427 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYGRD---FQAISDVIGN--KSVVQVKNFFVNYRRR 427 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTTC---HHHHHHHHSS--CCHHHHHHHHHHTTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCcC---HHHHHHHhCC--CCHHHHHHHHHHHHHH
Confidence 446799999999999999999943 3567777554 4999999999999864
No 201
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=49.91 E-value=49 Score=29.16 Aligned_cols=55 Identities=15% Similarity=0.110 Sum_probs=42.1
Q ss_pred ccCcCCCCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEec
Q 008619 9 SAWKDFPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEV 71 (559)
Q Consensus 9 s~~~~~p~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv 71 (559)
..++++ .+.+|.++.... ...+|...+..++.+.+..+++.+|.. .+.|+++.+.
T Consensus 105 ~~~~dL-~g~~i~~~~g~~-----~~~~l~~~~~~~~~~~~~~~~~~~l~~--g~~D~~~~~~ 159 (228)
T 2pyy_A 105 RSIDDL-PGKVVATTAGST-----AATYLREHHISVLEVPKIEEAYKALQT--KKADAVVFDA 159 (228)
T ss_dssp CSGGGC-TTCEEEEETTSH-----HHHHHHHTTCEEEEESSHHHHHHHHHT--TSSSEEEEEH
T ss_pred CCHHHc-CCCeEEEEcCcH-----HHHHHHHcCCceEecCCHHHHHHHHHc--CCCCEEEecH
Confidence 334444 467888877665 234555578899999999999999999 8899999975
No 202
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=49.52 E-value=57 Score=30.90 Aligned_cols=62 Identities=18% Similarity=0.207 Sum_probs=47.9
Q ss_pred CcEEEEEe------CCHHHHHHHHHHHhhCCCEEEEE----CCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHc
Q 008619 17 GLRVLLLD------QDSSAAAELKFKLEAMDYIVSTF----YNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA 86 (559)
Q Consensus 17 glrVLIVD------DD~~~~~~L~~~L~~~gy~V~ta----~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~I 86 (559)
+-+|++|+ |.......+.+.|++.|+++... .+.++..+.|.+ .|.|++ |+ ++-+.+++.+
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~----ad~I~l----~G-G~~~~l~~~L 97 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLRK----NDFIYV----TG-GNTFFLLQEL 97 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHH----SSEEEE----CC-SCHHHHHHHH
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHh----CCEEEE----CC-CCHHHHHHHH
Confidence 56999996 44467788999999999998877 488888888877 588886 66 6667666665
Q ss_pred C
Q 008619 87 K 87 (559)
Q Consensus 87 r 87 (559)
+
T Consensus 98 ~ 98 (206)
T 3l4e_A 98 K 98 (206)
T ss_dssp H
T ss_pred H
Confidence 4
No 203
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=49.33 E-value=1.3e+02 Score=25.91 Aligned_cols=112 Identities=12% Similarity=0.223 Sum_probs=61.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHh---hcCCCCee-EEEEec--CCCCCCCHHHHHHHcCCCcE
Q 008619 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAF---SDKPENFH-VAIVEV--TTSNTDGSFKFLETAKDLPT 91 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~L---re~~~~pD-LVIvDv--~MPd~mdG~eLLe~IrdiPV 91 (559)
+-|||-..+......++...+..||+|.-+++..+.-..+ .+. ..|. ++|+.- .+- ..-++++..+.--.+
T Consensus 3 ililintnndelikkikkevenqgyqvrdvndsdelkkemkklaee-knfekiliisndkqll--kemlelisklgykvf 79 (134)
T 2lci_A 3 ILILINTNNDELIKKIKKEVENQGYQVRDVNDSDELKKEMKKLAEE-KNFEKILIISNDKQLL--KEMLELISKLGYKVF 79 (134)
T ss_dssp CEEEEECSCHHHHHHHHHHTTTTTCEEEEECSHHHHHHHHHHHHHC-CSCCCEEEEESCHHHH--HHHHHHHHHHTCCEE
T ss_pred EEEEEcCCcHHHHHHHHHHHHccCeeeeecCchHHHHHHHHHHHhh-cCcceEEEEcCcHHHH--HHHHHHHHHhCceeE
Confidence 5677778888888889999999999999999988865543 222 3454 333211 000 011233333333333
Q ss_pred EEEecCCCHHH--HHHHHHcCCCEE-EeCCCCHHHHHHHHHHHHHH
Q 008619 92 IITSNIHCLST--MMKCIALGAVEF-LRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 92 ImLSa~~d~e~--v~kAi~~GA~DY-LvKPis~eeL~~iIq~vlrr 134 (559)
+++-..++.+. ..+-++ ..+| +.|-.+.++-+.+++....+
T Consensus 80 lllqdqdeneleefkrkie--sqgyevrkvtddeealkivrefmqk 123 (134)
T 2lci_A 80 LLLQDQDENELEEFKRKIE--SQGYEVRKVTDDEEALKIVREFMQK 123 (134)
T ss_dssp EEEECSCHHHHHHHHHHHH--TTTCEEEEECCHHHHHHHHHHHHHH
T ss_pred EEeecCchhHHHHHHHHHH--hCCeeeeecCChHHHHHHHHHHHHh
Confidence 44444333322 222233 3344 44555677777776666554
No 204
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=48.67 E-value=61 Score=32.23 Aligned_cols=133 Identities=11% Similarity=0.096 Sum_probs=71.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEEEE
Q 008619 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIIT 94 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVImL 94 (559)
+++||.||.--..-...+..+....+++++ .+....+..+.+.+. .. +-.. .+--++++. .++-+|++
T Consensus 3 ~~~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~-~g--~~~~-------~~~~~~l~~-~~~D~V~i 71 (344)
T 3euw_A 3 LTLRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEA-NG--AEAV-------ASPDEVFAR-DDIDGIVI 71 (344)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHT-TT--CEEE-------SSHHHHTTC-SCCCEEEE
T ss_pred CceEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHH-cC--Ccee-------CCHHHHhcC-CCCCEEEE
Confidence 458999999876665555544444478877 455444444443331 22 1111 122222221 14445555
Q ss_pred ec--CCCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHHHHHHhcCCCCccCCCcHHHHHHHHHHhh
Q 008619 95 SN--IHCLSTMMKCIALGAVEFLRKPL--SEDKLRNLWQHVVHKAFNAGGSALSDSLKPVKESVVSMLHL 160 (559)
Q Consensus 95 Sa--~~d~e~v~kAi~~GA~DYLvKPi--s~eeL~~iIq~vlrr~~~~~~~~~s~~Lt~re~eVl~li~~ 160 (559)
+. ..-.+.+..|+++|..=|+-||+ +.++....+..+-+... ........++.+.-..+.+++..
T Consensus 72 ~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~-~~~v~~~~r~~p~~~~~k~~i~~ 140 (344)
T 3euw_A 72 GSPTSTHVDLITRAVERGIPALCEKPIDLDIEMVRACKEKIGDGAS-KVMLGFNRRFDPSFAAINARVAN 140 (344)
T ss_dssp CSCGGGHHHHHHHHHHTTCCEEECSCSCSCHHHHHHHHHHHGGGGG-GEEECCGGGGCHHHHHHHHHHHT
T ss_pred eCCchhhHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHHhcCC-eEEecchhhcCHHHHHHHHHHhc
Confidence 44 34456788999999999999996 55666665444332211 11111133455656666666554
No 205
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=48.66 E-value=18 Score=35.96 Aligned_cols=74 Identities=11% Similarity=0.122 Sum_probs=48.7
Q ss_pred HHHHhhcCCCCeeEEEEecCCCCC-CC--------------------HHHHHHHcC---CCcEEEEecCC------CHHH
Q 008619 53 ALSAFSDKPENFHVAIVEVTTSNT-DG--------------------SFKFLETAK---DLPTIITSNIH------CLST 102 (559)
Q Consensus 53 AL~~Lre~~~~pDLVIvDv~MPd~-md--------------------G~eLLe~Ir---diPVImLSa~~------d~e~ 102 (559)
.++.|.+ . .|+|.+++-..|. .| .+++++.++ ++|||+|+-.. -...
T Consensus 35 ~~~~l~~--~-aD~IElG~PfsdP~adGp~Iq~a~~~Al~~G~~~~~~~~~v~~ir~~~~~Pii~m~y~n~v~~~g~~~f 111 (271)
T 1ujp_A 35 AVEEVLP--Y-ADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRALTEKPLFLMTYLNPVLAWGPERF 111 (271)
T ss_dssp HHHHHGG--G-CSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCSCEEEECCHHHHHHHCHHHH
T ss_pred HHHHHHh--c-CCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCEEEEecCcHHHHhhHHHH
Confidence 4444555 6 9999998755431 12 245666665 79999985322 2445
Q ss_pred HHHHHHcCCCEEEeCCCCHHHHHHHHH
Q 008619 103 MMKCIALGAVEFLRKPLSEDKLRNLWQ 129 (559)
Q Consensus 103 v~kAi~~GA~DYLvKPis~eeL~~iIq 129 (559)
+..+.++||+++++--+..+++...+.
T Consensus 112 ~~~~~~aG~dGviv~Dl~~ee~~~~~~ 138 (271)
T 1ujp_A 112 FGLFKQAGATGVILPDLPPDEDPGLVR 138 (271)
T ss_dssp HHHHHHHTCCEEECTTCCGGGCHHHHH
T ss_pred HHHHHHcCCCEEEecCCCHHHHHHHHH
Confidence 677899999999998777666555443
No 206
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=48.62 E-value=31 Score=32.08 Aligned_cols=76 Identities=11% Similarity=0.115 Sum_probs=51.0
Q ss_pred HHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-----CCcEEEEecCCCHHHHHHHHH
Q 008619 35 FKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-----DLPTIITSNIHCLSTMMKCIA 108 (559)
Q Consensus 35 ~~L~~~gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-----diPVImLSa~~d~e~v~kAi~ 108 (559)
+..+..|..+. .+.+..++...... ..|+|++ .|....|.+.++.++ ++||++..+-. .+.+.++++
T Consensus 95 ~~~~~~g~~~~~g~~t~~e~~~a~~~---G~d~v~v---~~t~~~g~~~~~~l~~~~~~~ipvia~GGI~-~~~i~~~~~ 167 (212)
T 2v82_A 95 RRAVGYGMTVCPGCATATEAFTALEA---GAQALKI---FPSSAFGPQYIKALKAVLPSDIAVFAVGGVT-PENLAQWID 167 (212)
T ss_dssp HHHHHTTCEEECEECSHHHHHHHHHT---TCSEEEE---TTHHHHCHHHHHHHHTTSCTTCEEEEESSCC-TTTHHHHHH
T ss_pred HHHHHcCCCEEeecCCHHHHHHHHHC---CCCEEEE---ecCCCCCHHHHHHHHHhccCCCeEEEeCCCC-HHHHHHHHH
Confidence 44555665543 57888888766544 5898886 221022566666653 38888877665 677888899
Q ss_pred cCCCEEEeC
Q 008619 109 LGAVEFLRK 117 (559)
Q Consensus 109 ~GA~DYLvK 117 (559)
+||+.+.+=
T Consensus 168 ~Ga~gv~vG 176 (212)
T 2v82_A 168 AGCAGAGLG 176 (212)
T ss_dssp HTCSEEEEC
T ss_pred cCCCEEEEC
Confidence 999999854
No 207
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}
Probab=48.60 E-value=28 Score=34.32 Aligned_cols=96 Identities=11% Similarity=-0.005 Sum_probs=56.3
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHH--------HHhhcCCCCeeEEEEec---C----------
Q 008619 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEAL--------SAFSDKPENFHVAIVEV---T---------- 72 (559)
Q Consensus 14 ~p~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL--------~~Lre~~~~pDLVIvDv---~---------- 72 (559)
|+.+++|+|++.|...... ...|.+.||+|....-..+.. +.+.+.-...|+||+-. .
T Consensus 2 ~~~~m~i~v~~~~~~~~~~-~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~~~~~ 80 (293)
T 3d4o_A 2 MLTGKHVVIIGGDARQLEI-IRKLSTFDAKISLVGFDQLDDGFIGVTKMRIDEVDWNTVDAILLPISGTNEAGKVDTIFS 80 (293)
T ss_dssp CCTTCEEEEECBCHHHHHH-HHHHHHTTCEEEEESCTTCC--CTTCEEECGGGCCGGGCSEEECCTTCCCTTCBCCBSSC
T ss_pred CccCcEEEEECCCHHHHHH-HHHHHhCCCEEEEeccccccccccccccccchHHHHhcCCEEEeccccccCCceeecccc
Confidence 4667899999988766554 455677899988654211100 11111112478888731 0
Q ss_pred -CCCCCCHHHHHHHcCCCcEEEEecCCCHHHHHHHHHcCCC
Q 008619 73 -TSNTDGSFKFLETAKDLPTIITSNIHCLSTMMKCIALGAV 112 (559)
Q Consensus 73 -MPd~mdG~eLLe~IrdiPVImLSa~~d~e~v~kAi~~GA~ 112 (559)
-+. .=.-++++.++.+.+|+ +..+..+....+.+.|..
T Consensus 81 ~~~~-~~~~~~l~~~~~l~~i~-~G~d~id~~~~~~~~gi~ 119 (293)
T 3d4o_A 81 NESI-VLTEEMIEKTPNHCVVY-SGISNTYLNQCMKKTNRT 119 (293)
T ss_dssp SCCC-BCCHHHHHTSCTTCEEE-ESSCCHHHHHHHHHHTCE
T ss_pred cCCc-cchHHHHHhCCCCCEEE-ecCCCHHHHHHHHHcCCe
Confidence 011 01246777777788776 777766654567777764
No 208
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=48.52 E-value=68 Score=31.31 Aligned_cols=106 Identities=12% Similarity=0.126 Sum_probs=63.8
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhh-CCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcE
Q 008619 14 FPKGLRVLLLDQDSSAAAELKFKLEA-MDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPT 91 (559)
Q Consensus 14 ~p~glrVLIVDDD~~~~~~L~~~L~~-~gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPV 91 (559)
+|+++||.||.--..-...+...|.. .+++++ .+....+..+.+.+ .+.+ +...+--++++ ++-+
T Consensus 3 ~M~~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~---~~~~-------~~~~~~~~ll~---~~D~ 69 (308)
T 3uuw_A 3 AMKNIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICS---DYRI-------MPFDSIESLAK---KCDC 69 (308)
T ss_dssp --CCCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHH---HHTC-------CBCSCHHHHHT---TCSE
T ss_pred ccccCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHH---HcCC-------CCcCCHHHHHh---cCCE
Confidence 45568999999987766545555555 478887 45543443333332 1111 11023445555 5555
Q ss_pred EEEec--CCCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHH
Q 008619 92 IITSN--IHCLSTMMKCIALGAVEFLRKPL--SEDKLRNLWQHVV 132 (559)
Q Consensus 92 ImLSa--~~d~e~v~kAi~~GA~DYLvKPi--s~eeL~~iIq~vl 132 (559)
|+++. ..-.+.+..++++|..=|+-||+ +.++....++.+-
T Consensus 70 V~i~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~ 114 (308)
T 3uuw_A 70 IFLHSSTETHYEIIKILLNLGVHVYVDKPLASTVSQGEELIELST 114 (308)
T ss_dssp EEECCCGGGHHHHHHHHHHTTCEEEECSSSSSSHHHHHHHHHHHH
T ss_pred EEEeCCcHhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHH
Confidence 55544 34566788999999998999998 6677777665543
No 209
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=48.19 E-value=21 Score=35.13 Aligned_cols=50 Identities=26% Similarity=0.371 Sum_probs=41.4
Q ss_pred CCceecCHHHHHHHHHHHHHhCCCCCCChHHHhhcCCCCCCHHHHHHhhhhhhhh
Q 008619 317 KMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMH 371 (559)
Q Consensus 317 k~r~~Wt~~lh~~Fv~av~~lg~~~a~pk~il~~m~v~~lt~~~v~shlQkyr~~ 371 (559)
|..-.||+|=+..|++|+...|-+ =..|-++ |.+=|..+|++|.++||..
T Consensus 131 k~s~~WTeEE~~lFleAl~kYGKD---W~~IAk~--VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYGRD---FQAISDV--IGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHSSC---HHHHHHH--HSSCCHHHHHHHHHHTTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCcC---HHHHHHH--cCCCCHHHHHHHHHHHHHH
Confidence 456689999999999999999954 3456555 6789999999999999854
No 210
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=47.91 E-value=1.1e+02 Score=32.90 Aligned_cols=97 Identities=13% Similarity=0.212 Sum_probs=62.1
Q ss_pred CcEEEEEe----CCHHHHHHHHHHHhhC-CCEEE--EECCHHHHHHHhhcCCCCeeEEEEecCCCCC-----------CC
Q 008619 17 GLRVLLLD----QDSSAAAELKFKLEAM-DYIVS--TFYNENEALSAFSDKPENFHVAIVEVTTSNT-----------DG 78 (559)
Q Consensus 17 glrVLIVD----DD~~~~~~L~~~L~~~-gy~V~--ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~-----------md 78 (559)
+..++++| ......+.++.+-+.. +..|+ .+.+.++|..++.. ..|.|++.+. ++. ..
T Consensus 241 G~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~g~v~t~e~a~~l~~a---GaD~I~vg~g-~Gs~~~t~~~~g~g~p 316 (490)
T 4avf_A 241 GVDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGGNIATAEAAKALAEA---GADAVKVGIG-PGSICTTRIVAGVGVP 316 (490)
T ss_dssp TCSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHT---TCSEEEECSS-CSTTCHHHHHTCBCCC
T ss_pred ccceEEecccCCcchhHHHHHHHHHHHCCCceEEEeeeCcHHHHHHHHHc---CCCEEEECCC-CCcCCCccccCCCCcc
Confidence 45567766 3344445555555555 44444 47888888776655 5788887421 110 11
Q ss_pred HHHHHHH----cC--CCcEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008619 79 SFKFLET----AK--DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (559)
Q Consensus 79 G~eLLe~----Ir--diPVImLSa~~d~e~v~kAi~~GA~DYLvK 117 (559)
.++++.. ++ ++|||.-.+-.+...+.+++.+||+...+=
T Consensus 317 ~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~~GAd~V~vG 361 (490)
T 4avf_A 317 QISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAGAYCVMMG 361 (490)
T ss_dssp HHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHcCCCeeeec
Confidence 2333333 32 699998888888999999999999988874
No 211
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=47.70 E-value=63 Score=29.46 Aligned_cols=61 Identities=13% Similarity=0.195 Sum_probs=45.5
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhCCCE--EE-EECCHHHHHHHhhcCC--CCeeEEEEecCCC
Q 008619 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDYI--VS-TFYNENEALSAFSDKP--ENFHVAIVEVTTS 74 (559)
Q Consensus 14 ~p~glrVLIVDDD~~~~~~L~~~L~~~gy~--V~-ta~~~~eAL~~Lre~~--~~pDLVIvDv~MP 74 (559)
++.+.+|..||-++...+..+..+...|+. |. .+.+..+.+..+.... ..||+|++|....
T Consensus 86 ~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~~~~ 151 (225)
T 3tr6_A 86 LPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDADKA 151 (225)
T ss_dssp CCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEEEECSCGG
T ss_pred CCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEEEECCCHH
Confidence 454679999999999999999999877642 44 6778878776665311 3699999988533
No 212
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=47.48 E-value=74 Score=28.98 Aligned_cols=61 Identities=16% Similarity=0.238 Sum_probs=45.8
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhCCC--EEE-EECCHHHHHHHhhcCC-CCeeEEEEecCCC
Q 008619 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDY--IVS-TFYNENEALSAFSDKP-ENFHVAIVEVTTS 74 (559)
Q Consensus 14 ~p~glrVLIVDDD~~~~~~L~~~L~~~gy--~V~-ta~~~~eAL~~Lre~~-~~pDLVIvDv~MP 74 (559)
++.+.+|..||-++......+..+...|+ .|. ...+..+.+..+.... ..||+|++|...+
T Consensus 80 ~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~~d~~~~ 144 (223)
T 3duw_A 80 LSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIFIDADKQ 144 (223)
T ss_dssp CCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEEECSCGG
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEEEcCCcH
Confidence 44457999999999999999999987765 244 6778888777665421 4699999997643
No 213
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=47.45 E-value=80 Score=29.32 Aligned_cols=66 Identities=11% Similarity=0.156 Sum_probs=43.3
Q ss_pred CHHHHHHHhhcCCCCeeEEEE-ecCCCCC--CCHHHHHHHcC---CCcEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008619 49 NENEALSAFSDKPENFHVAIV-EVTTSNT--DGSFKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (559)
Q Consensus 49 ~~~eAL~~Lre~~~~pDLVIv-Dv~MPd~--mdG~eLLe~Ir---diPVImLSa~~d~e~v~kAi~~GA~DYLv 116 (559)
+..+.++.+.+ ...|.|++ ++...+. .-.+++++.++ ++|||+..+-...+.+.+++++||+.+++
T Consensus 155 ~~~e~~~~~~~--~G~d~i~~~~~~~~g~~~~~~~~~i~~l~~~~~~pvia~GGi~~~~~~~~~~~~Ga~~v~v 226 (253)
T 1h5y_A 155 DAVKWAKEVEE--LGAGEILLTSIDRDGTGLGYDVELIRRVADSVRIPVIASGGAGRVEHFYEAAAAGADAVLA 226 (253)
T ss_dssp EHHHHHHHHHH--HTCSEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred CHHHHHHHHHh--CCCCEEEEecccCCCCcCcCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCcHHHH
Confidence 34555555555 34676654 4443220 11345666554 79999888877778899999999999876
No 214
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=47.44 E-value=60 Score=30.89 Aligned_cols=79 Identities=11% Similarity=0.028 Sum_probs=46.2
Q ss_pred CcEEEEEeC---CHHH---HHHHHHHHhhCCCEEEEECC-----HH---HHHHHhhcCCCCeeEEEEecCCCCCCCHHHH
Q 008619 17 GLRVLLLDQ---DSSA---AAELKFKLEAMDYIVSTFYN-----EN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKF 82 (559)
Q Consensus 17 glrVLIVDD---D~~~---~~~L~~~L~~~gy~V~ta~~-----~~---eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eL 82 (559)
.++|.+|-. ++.. ...++..++..||.+..+.. .+ ++++.+.. ..+|-||+--..++ .....
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgiii~~~~~~--~~~~~ 78 (297)
T 3rot_A 3 RDKYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALA--TYPSGIATTIPSDT--AFSKS 78 (297)
T ss_dssp CCEEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHH--TCCSEEEECCCCSS--TTHHH
T ss_pred eEEEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHH--cCCCEEEEeCCCHH--HHHHH
Confidence 345555532 3333 34455666677999886652 23 45555666 57998887433222 12445
Q ss_pred HHHcC--CCcEEEEecCCC
Q 008619 83 LETAK--DLPTIITSNIHC 99 (559)
Q Consensus 83 Le~Ir--diPVImLSa~~d 99 (559)
++.+. .+|||++.....
T Consensus 79 ~~~~~~~giPvV~~~~~~~ 97 (297)
T 3rot_A 79 LQRANKLNIPVIAVDTRPK 97 (297)
T ss_dssp HHHHHHHTCCEEEESCCCS
T ss_pred HHHHHHCCCCEEEEcCCCc
Confidence 66654 899999876543
No 215
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=47.35 E-value=27 Score=33.90 Aligned_cols=106 Identities=14% Similarity=0.120 Sum_probs=65.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEE--EECCHHHHHHHhhcCCCCeeEEEEecC---------CCCCCCHHHHHHH
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVS--TFYNENEALSAFSDKPENFHVAIVEVT---------TSNTDGSFKFLET 85 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~--ta~~~~eAL~~Lre~~~~pDLVIvDv~---------MPd~mdG~eLLe~ 85 (559)
..+++|+.+.+ ....++++.+..+-.|. -.-+..+..+.+.. .|++|+-.. ..+ .-|..+++.
T Consensus 188 ~~~l~i~G~g~-~~~~l~~~~~~~~~~v~~~g~~~~~~l~~~~~~----adv~v~ps~~~~~~~~~~~~E-~~~~~~~EA 261 (342)
T 2iuy_A 188 GRRLVLAGPAW-EPEYFDEITRRYGSTVEPIGEVGGERRLDLLAS----AHAVLAMSQAVTGPWGGIWCE-PGATVVSEA 261 (342)
T ss_dssp TCCEEEESCCC-CHHHHHHHHHHHTTTEEECCCCCHHHHHHHHHH----CSEEEECCCCCCCTTCSCCCC-CCCHHHHHH
T ss_pred CcEEEEEeCcc-cHHHHHHHHHHhCCCEEEeccCCHHHHHHHHHh----CCEEEECCccccccccccccc-CccHHHHHH
Confidence 35677777643 22333443333222233 23345555666666 577776443 134 557888888
Q ss_pred cC-CCcEEEEecCCCHHHHHHHHHc--CCCEEEeCCCCHHHHHHHHHHHHH
Q 008619 86 AK-DLPTIITSNIHCLSTMMKCIAL--GAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 86 Ir-diPVImLSa~~d~e~v~kAi~~--GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
+. .+|||... ... ..+.+.. |-++|+..+ +.++|.+.|..++.
T Consensus 262 ma~G~PvI~s~-~~~---~~e~~~~~~~~~g~~~~~-d~~~l~~~i~~l~~ 307 (342)
T 2iuy_A 262 AVSGTPVVGTG-NGC---LAEIVPSVGEVVGYGTDF-APDEARRTLAGLPA 307 (342)
T ss_dssp HHTTCCEEECC-TTT---HHHHGGGGEEECCSSSCC-CHHHHHHHHHTSCC
T ss_pred HhcCCCEEEcC-CCC---hHHHhcccCCCceEEcCC-CHHHHHHHHHHHHH
Confidence 75 89998543 333 4455677 888999999 99999999877653
No 216
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=46.92 E-value=51 Score=30.17 Aligned_cols=59 Identities=17% Similarity=0.197 Sum_probs=43.7
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhCCC--EEE-EECCHHHHHHHhhcCC--CCeeEEEEecC
Q 008619 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDY--IVS-TFYNENEALSAFSDKP--ENFHVAIVEVT 72 (559)
Q Consensus 14 ~p~glrVLIVDDD~~~~~~L~~~L~~~gy--~V~-ta~~~~eAL~~Lre~~--~~pDLVIvDv~ 72 (559)
++.+.+|..||-++...+..+..+...|+ .+. ...+..+.+..+.... ..||+|++|..
T Consensus 91 ~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~~d~~ 154 (229)
T 2avd_A 91 LPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDAD 154 (229)
T ss_dssp SCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSC
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEEEECCC
Confidence 34457999999999999999999987764 343 5677777776654311 36999999875
No 217
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=46.88 E-value=23 Score=28.52 Aligned_cols=44 Identities=18% Similarity=0.402 Sum_probs=35.5
Q ss_pred ecCHHHHHHHHHHHHHhCCCCCCChH---HHhhcCCCCCCHHHHHHhhhhhh
Q 008619 321 DWTPELHKKFVQAVEQLGVDQAIPSR---ILELMKVEGLTRHNVASHLQKYR 369 (559)
Q Consensus 321 ~Wt~~lh~~Fv~av~~lg~~~a~pk~---il~~m~v~~lt~~~v~shlQkyr 369 (559)
.||.|=++.|.+|+.+++.+ +|.+ |-+.| |=|-++|+.|-+++.
T Consensus 10 ~WT~eE~k~fe~al~~~p~~--t~~RW~~IA~~l---gRt~~eV~~~y~~L~ 56 (72)
T 2cqq_A 10 EWTEEDLSQLTRSMVKFPGG--TPGRWEKIAHEL---GRSVTDVTTKAKQLK 56 (72)
T ss_dssp CCCHHHHHHHHHHHHHSCTT--CTTHHHHHHHHH---TSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCC--CCcHHHHHHHHh---CCCHHHHHHHHHHHH
Confidence 79999999999999999843 5665 55555 689999999877664
No 218
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=46.74 E-value=87 Score=32.40 Aligned_cols=85 Identities=14% Similarity=0.091 Sum_probs=53.5
Q ss_pred HHHHHHHHHhhC-CCEEE--EECCHHHHHHHhhcCCCCeeEEEEecCC---------CC-CCCHHHHHHHc----C--CC
Q 008619 29 AAAELKFKLEAM-DYIVS--TFYNENEALSAFSDKPENFHVAIVEVTT---------SN-TDGSFKFLETA----K--DL 89 (559)
Q Consensus 29 ~~~~L~~~L~~~-gy~V~--ta~~~~eAL~~Lre~~~~pDLVIvDv~M---------Pd-~mdG~eLLe~I----r--di 89 (559)
..+.++.+-+.. +..|+ .+.+.++|..+... ..|.|++...- .+ ....++.+..+ . ++
T Consensus 181 ~~e~i~~ir~~~~~~pviv~~v~~~~~a~~a~~~---Gad~I~vg~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~i 257 (404)
T 1eep_A 181 IIELIKKIKTKYPNLDLIAGNIVTKEAALDLISV---GADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACNNTNI 257 (404)
T ss_dssp HHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHTT---TCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHCCCCeEEEcCCCcHHHHHHHHhc---CCCEEEECCCCCcCcCccccCCCCcchHHHHHHHHHHHhhcCc
Confidence 444444444444 56555 57777777665543 58988882210 11 01123333333 2 69
Q ss_pred cEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008619 90 PTIITSNIHCLSTMMKCIALGAVEFLR 116 (559)
Q Consensus 90 PVImLSa~~d~e~v~kAi~~GA~DYLv 116 (559)
|||....-.+.+.+.+++.+||+...+
T Consensus 258 pVia~GGI~~~~d~~~ala~GAd~V~i 284 (404)
T 1eep_A 258 CIIADGGIRFSGDVVKAIAAGADSVMI 284 (404)
T ss_dssp EEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred eEEEECCCCCHHHHHHHHHcCCCHHhh
Confidence 999888888899999999999998886
No 219
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=46.59 E-value=19 Score=36.00 Aligned_cols=75 Identities=15% Similarity=0.180 Sum_probs=46.9
Q ss_pred CcEEEEEeCC-----HHHHHHHHHHHhhCC-CEEEEECCHH-----HHHHHhhcCCCCeeEEEEecCCCCCCCH--HH-H
Q 008619 17 GLRVLLLDQD-----SSAAAELKFKLEAMD-YIVSTFYNEN-----EALSAFSDKPENFHVAIVEVTTSNTDGS--FK-F 82 (559)
Q Consensus 17 glrVLIVDDD-----~~~~~~L~~~L~~~g-y~V~ta~~~~-----eAL~~Lre~~~~pDLVIvDv~MPd~mdG--~e-L 82 (559)
.++||||.-. ......|..+|++.| |+|+...+.. +.+ .+.=..+|+||++..... .+. .+ |
T Consensus 4 ~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f---~~~L~~~D~vV~~~~~~~-l~~~~~~~l 79 (281)
T 4e5v_A 4 PIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGF---VLDFSPYQLVVLDYNGDS-WPEETNRRF 79 (281)
T ss_dssp CEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTC---CCCCTTCSEEEECCCSSC-CCHHHHHHH
T ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHH---hhhhhcCCEEEEeCCCCc-CCHHHHHHH
Confidence 4899999762 566688999999888 9999776531 222 111146999998876444 332 11 2
Q ss_pred HHHcC-CCcEEEEe
Q 008619 83 LETAK-DLPTIITS 95 (559)
Q Consensus 83 Le~Ir-diPVImLS 95 (559)
.+.++ ...+|++=
T Consensus 80 ~~yV~~Ggglv~~H 93 (281)
T 4e5v_A 80 LEYVQNGGGVVIYH 93 (281)
T ss_dssp HHHHHTTCEEEEEG
T ss_pred HHHHHcCCCEEEEe
Confidence 23333 56666663
No 220
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=46.49 E-value=1.2e+02 Score=30.09 Aligned_cols=134 Identities=10% Similarity=0.095 Sum_probs=73.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhh-CCCEEE-EECCHHHHHHHh-hcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEEE
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEA-MDYIVS-TFYNENEALSAF-SDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTII 93 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~-~gy~V~-ta~~~~eAL~~L-re~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVIm 93 (559)
++||.||.--..-...+..+... .+++++ .|....+..+.+ .. ..++.... .+--++++. .++-+|+
T Consensus 2 ~~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~--~g~~~~~~-------~~~~~ll~~-~~~D~V~ 71 (344)
T 3mz0_A 2 SLRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQ--YQLNATVY-------PNDDSLLAD-ENVDAVL 71 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHH--TTCCCEEE-------SSHHHHHHC-TTCCEEE
T ss_pred eEEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHH--hCCCCeee-------CCHHHHhcC-CCCCEEE
Confidence 47899999877666555555523 478877 444333333333 33 22111111 123344442 1344444
Q ss_pred Eec--CCCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHHHHHHhcCCCCccCCCcHHHHHHHHHHhh
Q 008619 94 TSN--IHCLSTMMKCIALGAVEFLRKPL--SEDKLRNLWQHVVHKAFNAGGSALSDSLKPVKESVVSMLHL 160 (559)
Q Consensus 94 LSa--~~d~e~v~kAi~~GA~DYLvKPi--s~eeL~~iIq~vlrr~~~~~~~~~s~~Lt~re~eVl~li~~ 160 (559)
++. ..-.+.+..++++|..=|+-||+ +.++....++.+-+............++.+.-..+.+++..
T Consensus 72 i~tp~~~h~~~~~~al~~Gk~vl~EKP~a~~~~e~~~l~~~a~~~g~~~~~v~~~~r~~p~~~~~k~~i~~ 142 (344)
T 3mz0_A 72 VTSWGPAHESSVLKAIKAQKYVFCEKPLATTAEGCMRIVEEEIKVGKRLVQVGFMRRYDSGYVQLKEALDN 142 (344)
T ss_dssp ECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHHSSCCEEECCGGGGSHHHHHHHHHHHT
T ss_pred ECCCchhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHHCCEEEEEecccccCHHHHHHHHHHHc
Confidence 443 34566788999999999999996 56777766654433211110111234556666666666654
No 221
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=46.18 E-value=1.4e+02 Score=29.28 Aligned_cols=96 Identities=14% Similarity=0.143 Sum_probs=60.0
Q ss_pred HHHHHhhCCCEE--EEEC-CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-----CCcEEEEecCCCHHHHH
Q 008619 33 LKFKLEAMDYIV--STFY-NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-----DLPTIITSNIHCLSTMM 104 (559)
Q Consensus 33 L~~~L~~~gy~V--~ta~-~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-----diPVImLSa~~d~e~v~ 104 (559)
|++.|..-.-.+ .... +..+.++.+.. ..+|.||+|+.-.- .+.-++...++ ...+++=....+...+.
T Consensus 6 ~k~~l~~g~~~~g~~~~~~~~p~~~e~a~~--~g~D~vilDlEhav-~~~~k~~~~l~a~~~~~~~~~VRVn~~~~~di~ 82 (261)
T 3qz6_A 6 LKKKLSAGKSVVGTMLNLVYNPDIVRIYAE--AGLDYFIVDCEHAA-YTFREINHLVSVAKNAGVSVLVRIPQVDRAHVQ 82 (261)
T ss_dssp HHHHHHTTCCEEEEEESSCCCTTHHHHHHH--TTCSEEEEESSSSC-CCHHHHHHHHHHHHHHTCEEEEECSSCCHHHHH
T ss_pred HHHHHHCCCCEEEEEEecCCCHHHHHHHhc--CCcCEEEEeccCCC-CCHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHH
Confidence 455665432222 2223 34556666666 57999999998766 56555555443 45554444455677889
Q ss_pred HHHHcCCCEEEe-CCCCHHHHHHHHHHH
Q 008619 105 KCIALGAVEFLR-KPLSEDKLRNLWQHV 131 (559)
Q Consensus 105 kAi~~GA~DYLv-KPis~eeL~~iIq~v 131 (559)
.++..|++..++ |--+.+++...+..+
T Consensus 83 ~~ld~G~~gI~lP~v~saed~~~~~~~~ 110 (261)
T 3qz6_A 83 RLLDIGAEGFMIPGVQSAETMRETVRLA 110 (261)
T ss_dssp HHHHHTCCEEEETTCCSHHHHHHHHHHH
T ss_pred HHHhcCCCEEEECCcCCHHHHHHHHHHh
Confidence 999999988765 333678877765443
No 222
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=45.86 E-value=57 Score=30.26 Aligned_cols=68 Identities=13% Similarity=0.071 Sum_probs=44.5
Q ss_pred EECCHHHHHHHhhcCCCCeeEEEEecCCC----C---CCCHHHHHHHcC---C-CcEEEEecCCCHHHHHHHHHcCCCEE
Q 008619 46 TFYNENEALSAFSDKPENFHVAIVEVTTS----N---TDGSFKFLETAK---D-LPTIITSNIHCLSTMMKCIALGAVEF 114 (559)
Q Consensus 46 ta~~~~eAL~~Lre~~~~pDLVIvDv~MP----d---~mdG~eLLe~Ir---d-iPVImLSa~~d~e~v~kAi~~GA~DY 114 (559)
.+.+..++...... .+|.|++..-.+ . ...|+++++.++ . +||++..+-. .+.+.+++..||+.+
T Consensus 122 s~~t~~e~~~a~~~---g~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~~~~~pvia~GGI~-~~nv~~~~~~Ga~gv 197 (227)
T 2tps_A 122 SAHTMSEVKQAEED---GADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGIT-IDNAAPVIQAGADGV 197 (227)
T ss_dssp EECSHHHHHHHHHH---TCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTTCCCCEEEESSCC-TTTSHHHHHTTCSEE
T ss_pred ecCCHHHHHHHHhC---CCCEEEECCCcCCCCCCCCCCccCHHHHHHHHHhCCCCCEEEEcCCC-HHHHHHHHHcCCCEE
Confidence 46788886655433 589998622111 1 023567776664 5 8988776655 677778889999988
Q ss_pred EeC
Q 008619 115 LRK 117 (559)
Q Consensus 115 LvK 117 (559)
.+=
T Consensus 198 ~vg 200 (227)
T 2tps_A 198 SMI 200 (227)
T ss_dssp EES
T ss_pred EEh
Confidence 753
No 223
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=45.55 E-value=1.2e+02 Score=32.34 Aligned_cols=84 Identities=14% Similarity=0.172 Sum_probs=55.9
Q ss_pred HHHHHHHHHhhC-CCEEE--EECCHHHHHHHhhcCCCCeeEEEEecCCC--------------CCCCHHHHHHHcC---C
Q 008619 29 AAAELKFKLEAM-DYIVS--TFYNENEALSAFSDKPENFHVAIVEVTTS--------------NTDGSFKFLETAK---D 88 (559)
Q Consensus 29 ~~~~L~~~L~~~-gy~V~--ta~~~~eAL~~Lre~~~~pDLVIvDv~MP--------------d~mdG~eLLe~Ir---d 88 (559)
..+.++.+-+.+ ++.|. .+.+.++|..+... ..|.|++..+-. . ...+.++..+. +
T Consensus 283 ~~~~i~~i~~~~~~~pvi~~~v~t~~~a~~l~~a---Gad~I~vg~~~G~~~~t~~~~~~g~~~-~~~~~~~~~~~~~~~ 358 (514)
T 1jcn_A 283 QIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLIDA---GVDGLRVGMGCGSICITQEVMACGRPQ-GTAVYKVAEYARRFG 358 (514)
T ss_dssp HHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHH---TCSEEEECSSCSCCBTTBCCCSCCCCH-HHHHHHHHHHHGGGT
T ss_pred HHHHHHHHHHhCCCCceEecccchHHHHHHHHHc---CCCEEEECCCCCcccccccccCCCccc-hhHHHHHHHHHhhCC
Confidence 344555555555 56555 47788887776655 478877743211 1 11245555553 7
Q ss_pred CcEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008619 89 LPTIITSNIHCLSTMMKCIALGAVEFLR 116 (559)
Q Consensus 89 iPVImLSa~~d~e~v~kAi~~GA~DYLv 116 (559)
+|||....-.+...+.+++.+||+...+
T Consensus 359 ipVia~GGI~~~~di~kala~GAd~V~i 386 (514)
T 1jcn_A 359 VPIIADGGIQTVGHVVKALALGASTVMM 386 (514)
T ss_dssp CCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred CCEEEECCCCCHHHHHHHHHcCCCeeeE
Confidence 9999888888889999999999998765
No 224
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=45.16 E-value=84 Score=26.96 Aligned_cols=26 Identities=15% Similarity=0.167 Sum_probs=13.7
Q ss_pred CCcEEEEecCCCHHHHHHHHHcCCCEEE
Q 008619 88 DLPTIITSNIHCLSTMMKCIALGAVEFL 115 (559)
Q Consensus 88 diPVImLSa~~d~e~v~kAi~~GA~DYL 115 (559)
++.||+... +.+......+.||+..+
T Consensus 98 ~~~iiar~~--~~~~~~~l~~~G~d~vi 123 (140)
T 3fwz_A 98 DIEIIARAH--YDDEVAYITERGANQVV 123 (140)
T ss_dssp SSEEEEEES--SHHHHHHHHHTTCSEEE
T ss_pred CCeEEEEEC--CHHHHHHHHHCCCCEEE
Confidence 455555443 23344455567776555
No 225
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=44.99 E-value=70 Score=32.66 Aligned_cols=41 Identities=12% Similarity=0.204 Sum_probs=28.3
Q ss_pred CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008619 88 DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 88 diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
.+|+|++-...+. .+.++.|+. +++.+ +.++|...+..++.
T Consensus 326 G~PvV~~~~~~~~---~e~v~~G~~-~lv~~-d~~~l~~ai~~ll~ 366 (396)
T 3dzc_A 326 GKPVLVMRETTER---PEAVAAGTV-KLVGT-NQQQICDALSLLLT 366 (396)
T ss_dssp TCCEEECCSSCSC---HHHHHHTSE-EECTT-CHHHHHHHHHHHHH
T ss_pred CCCEEEccCCCcc---hHHHHcCce-EEcCC-CHHHHHHHHHHHHc
Confidence 8999975344433 245677864 67654 89999998888774
No 226
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=44.77 E-value=1.1e+02 Score=30.92 Aligned_cols=33 Identities=12% Similarity=0.047 Sum_probs=22.6
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEE
Q 008619 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTF 47 (559)
Q Consensus 14 ~p~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta 47 (559)
|+.+.+|||+......+ .+...+++.||.++.+
T Consensus 4 m~~~~~ilI~g~g~~~~-~~~~a~~~~G~~~v~v 36 (403)
T 4dim_A 4 MYDNKRLLILGAGRGQL-GLYKAAKELGIHTIAG 36 (403)
T ss_dssp --CCCEEEEECCCGGGH-HHHHHHHHHTCEEEEE
T ss_pred ccCCCEEEEECCcHhHH-HHHHHHHHCCCEEEEE
Confidence 45567999999887543 4556677789887754
No 227
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=44.45 E-value=31 Score=34.36 Aligned_cols=76 Identities=12% Similarity=0.123 Sum_probs=51.0
Q ss_pred HHHHHHhhcCCCCeeEEEEecCCCCC-CCH--------------------HHHHHHcC----CCcEEEEecCC------C
Q 008619 51 NEALSAFSDKPENFHVAIVEVTTSNT-DGS--------------------FKFLETAK----DLPTIITSNIH------C 99 (559)
Q Consensus 51 ~eAL~~Lre~~~~pDLVIvDv~MPd~-mdG--------------------~eLLe~Ir----diPVImLSa~~------d 99 (559)
.+.+..|.+ ...|+|=+++-..|. +|| +++++.+| ++||++|+-.. -
T Consensus 35 ~~~~~~l~~--~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~~~v~~ir~~~~~~Pivlm~Y~npv~~~g~ 112 (267)
T 3vnd_A 35 LKIIQTLVD--NGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQHPDMPIGLLLYANLVFANGI 112 (267)
T ss_dssp HHHHHHHHH--TTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCEEEEECHHHHHHHCH
T ss_pred HHHHHHHHH--cCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHhhH
Confidence 334445555 567888888544331 333 45666664 68999997643 2
Q ss_pred HHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Q 008619 100 LSTMMKCIALGAVEFLRKPLSEDKLRNLW 128 (559)
Q Consensus 100 ~e~v~kAi~~GA~DYLvKPis~eeL~~iI 128 (559)
...+.++.++|+++.++--+..++....+
T Consensus 113 e~f~~~~~~aGvdgvii~Dlp~ee~~~~~ 141 (267)
T 3vnd_A 113 DEFYTKAQAAGVDSVLIADVPVEESAPFS 141 (267)
T ss_dssp HHHHHHHHHHTCCEEEETTSCGGGCHHHH
T ss_pred HHHHHHHHHcCCCEEEeCCCCHhhHHHHH
Confidence 56788999999999999878777755433
No 228
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=44.34 E-value=1.3e+02 Score=29.89 Aligned_cols=87 Identities=11% Similarity=0.001 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecC-CCCC-CC---HHHHHHHcC-CCcEEEEecCCCH
Q 008619 28 SAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVT-TSNT-DG---SFKFLETAK-DLPTIITSNIHCL 100 (559)
Q Consensus 28 ~~~~~L~~~L~~~gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~-MPd~-md---G~eLLe~Ir-diPVImLSa~~d~ 100 (559)
..+..|..+-..+|.++. .+.+.+|+-..+.- ..++|=++-+ +-.- .| ..+++..+. ++.+|.-|+-.+.
T Consensus 140 ~~l~~l~~~A~~lGl~~LvEVh~~~El~rAl~~---~a~iIGINNRnL~tf~vdl~~t~~L~~~ip~~~~~VsESGI~t~ 216 (258)
T 4a29_A 140 RELESLLEYARSYGMEPLILINDENDLDIALRI---GARFIGIMSRDFETGEINKENQRKLISMIPSNVVKVAKLGISER 216 (258)
T ss_dssp HHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHT---TCSEEEECSBCTTTCCBCHHHHHHHHTTSCTTSEEEEEESSCCH
T ss_pred HHHHHHHHHHHHHhHHHHHhcchHHHHHHHhcC---CCcEEEEeCCCccccccCHHHHHHHHhhCCCCCEEEEcCCCCCH
Confidence 345566666677888755 89999998777765 3566644332 2220 22 233444443 6777888899999
Q ss_pred HHHHHHHHcCCCEEEeC
Q 008619 101 STMMKCIALGAVEFLRK 117 (559)
Q Consensus 101 e~v~kAi~~GA~DYLvK 117 (559)
+.+.+...+|+++||+-
T Consensus 217 ~dv~~l~~~G~~a~LVG 233 (258)
T 4a29_A 217 NEIEELRKLGVNAFLIS 233 (258)
T ss_dssp HHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHHCCCCEEEEC
Confidence 99999999999999985
No 229
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=43.89 E-value=37 Score=35.47 Aligned_cols=99 Identities=19% Similarity=0.187 Sum_probs=63.5
Q ss_pred cEEEEEe--CCHHH---HHHHHHHHhhCCCEEEEECCHHHHHHHh-------------------hcCCCCeeEEEEecCC
Q 008619 18 LRVLLLD--QDSSA---AAELKFKLEAMDYIVSTFYNENEALSAF-------------------SDKPENFHVAIVEVTT 73 (559)
Q Consensus 18 lrVLIVD--DD~~~---~~~L~~~L~~~gy~V~ta~~~~eAL~~L-------------------re~~~~pDLVIvDv~M 73 (559)
-+|+||- .++.. ...|.+.|...|+.|..-....+.+... .+....+|+||+ +
T Consensus 39 k~I~iv~K~~~~~~~~~~~~l~~~L~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlvI~---l 115 (365)
T 3pfn_A 39 KSVLVIKKMRDASLLQPFKELCTHLMEENMIVYVEKKVLEDPAIASDESFGAVKKKFCTFREDYDDISNQIDFIIC---L 115 (365)
T ss_dssp CEEEEEECTTCGGGHHHHHHHHHHHHHTSCEEEEEHHHHHSHHHHHCSTTHHHHHHCEEECTTTCCCTTTCSEEEE---E
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEehHHhhhhccccccccccccccccccccChhhcccCCCEEEE---E
Confidence 3788885 33333 4556677777799988655444433221 111246788887 2
Q ss_pred CCCCCH--HHHHHHcC--CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008619 74 SNTDGS--FKFLETAK--DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (559)
Q Consensus 74 Pd~mdG--~eLLe~Ir--diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~ 135 (559)
+ +|| +...+.+. .+|||-+.. |--+||. +++.+++...+..++++.
T Consensus 116 -G-GDGT~L~aa~~~~~~~~PvlGiN~-------------G~LGFLt-~~~~~~~~~~l~~vl~g~ 165 (365)
T 3pfn_A 116 -G-GDGTLLYASSLFQGSVPPVMAFHL-------------GSLGFLT-PFSFENFQSQVTQVIEGN 165 (365)
T ss_dssp -S-STTHHHHHHHHCSSSCCCEEEEES-------------SSCTTTC-CEESTTHHHHHHHHHHSC
T ss_pred -c-ChHHHHHHHHHhccCCCCEEEEcC-------------CCCccce-eecHHHHHHHHHHHHcCC
Confidence 3 577 45555554 689987753 6667787 788888988888888653
No 230
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=43.62 E-value=61 Score=30.71 Aligned_cols=61 Identities=16% Similarity=0.230 Sum_probs=45.4
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhCCCE--EE-EECCHHHHHHHhhcCCCCeeEEEEecCCCC
Q 008619 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDYI--VS-TFYNENEALSAFSDKPENFHVAIVEVTTSN 75 (559)
Q Consensus 14 ~p~glrVLIVDDD~~~~~~L~~~L~~~gy~--V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd 75 (559)
++.+.+|..||-++...+..+..+...|+. |. ...+..+.+..+.. ...||+|++|...++
T Consensus 85 ~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~-~~~fD~V~~d~~~~~ 148 (248)
T 3tfw_A 85 LPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGE-CPAFDLIFIDADKPN 148 (248)
T ss_dssp SCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCS-CCCCSEEEECSCGGG
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCC-CCCeEEEEECCchHH
Confidence 444679999999999999999999877653 44 67787776665532 147999999985443
No 231
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}
Probab=43.58 E-value=76 Score=31.99 Aligned_cols=108 Identities=15% Similarity=0.166 Sum_probs=64.4
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEE
Q 008619 15 PKGLRVLLLDQDSSAAAELKFKLEAM-DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTI 92 (559)
Q Consensus 15 p~glrVLIVDDD~~~~~~L~~~L~~~-gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVI 92 (559)
|+.+||.||.--..-...+...|... +++++ .|....+..+.+.+. .. ..-.. .+--++++.- ++-+|
T Consensus 3 M~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~-~~-~~~~~-------~~~~~ll~~~-~vD~V 72 (359)
T 3m2t_A 3 LSLIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRF-IS-DIPVL-------DNVPAMLNQV-PLDAV 72 (359)
T ss_dssp CCCEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGT-SC-SCCEE-------SSHHHHHHHS-CCSEE
T ss_pred CCcceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHh-cC-CCccc-------CCHHHHhcCC-CCCEE
Confidence 34589999999876665444445544 78887 555444444444441 10 11011 2334455432 44455
Q ss_pred EEec--CCCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHH
Q 008619 93 ITSN--IHCLSTMMKCIALGAVEFLRKPL--SEDKLRNLWQHVV 132 (559)
Q Consensus 93 mLSa--~~d~e~v~kAi~~GA~DYLvKPi--s~eeL~~iIq~vl 132 (559)
+++. ..-.+.+..|+++|..=|+-||+ +.++....++.+-
T Consensus 73 ~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~e~~~l~~~a~ 116 (359)
T 3m2t_A 73 VMAGPPQLHFEMGLLAMSKGVNVFVEKPPCATLEELETLIDAAR 116 (359)
T ss_dssp EECSCHHHHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHH
T ss_pred EEcCCcHHHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHHHH
Confidence 5544 33556788999999999999996 6677777665543
No 232
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=43.32 E-value=1.2e+02 Score=26.26 Aligned_cols=65 Identities=12% Similarity=0.105 Sum_probs=43.4
Q ss_pred CeeEEEEecCCCCCCCHHHHHHHcC-CCcEEEEecCCCHHHHHHHHHcCCCEEEeCC--CCHHHHHHHHHHHHH
Q 008619 63 NFHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIHCLSTMMKCIALGAVEFLRKP--LSEDKLRNLWQHVVH 133 (559)
Q Consensus 63 ~pDLVIvDv~MPd~mdG~eLLe~Ir-diPVImLSa~~d~e~v~kAi~~GA~DYLvKP--is~eeL~~iIq~vlr 133 (559)
..|++|+ . ..+..+++.+. .+|+|++-...+.....+.+...-.++++.+ ++.++|.+.|..++.
T Consensus 86 ~ad~~I~-----~-~G~~t~~Ea~~~G~P~i~~p~~~~Q~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~ 153 (170)
T 2o6l_A 86 KTRAFIT-----H-GGANGIYEAIYHGIPMVGIPLFADQPDNIAHMKARGAAVRVDFNTMSSTDLLNALKRVIN 153 (170)
T ss_dssp TEEEEEE-----C-CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHHHHH
T ss_pred CcCEEEE-----c-CCccHHHHHHHcCCCEEeccchhhHHHHHHHHHHcCCeEEeccccCCHHHHHHHHHHHHc
Confidence 4677775 2 23555666665 8999988776665554555555445666665 488999998888774
No 233
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=43.20 E-value=43 Score=28.36 Aligned_cols=73 Identities=16% Similarity=0.263 Sum_probs=45.6
Q ss_pred CCCcEEEEE-----eCCHHHHHHHHHHHhhCCCE--EEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHc-
Q 008619 15 PKGLRVLLL-----DQDSSAAAELKFKLEAMDYI--VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA- 86 (559)
Q Consensus 15 p~glrVLIV-----DDD~~~~~~L~~~L~~~gy~--V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~I- 86 (559)
|..++||+| ... .....|++.+...|+. |..+. ..++-..+ ..+|+||+-..+.. -++-++..
T Consensus 2 ~~~mkIlvvC~~G~~TS-ll~~kl~~~~~~~gi~~~i~~~~-~~~~~~~~----~~~D~Ii~t~~l~~---~~~~~~~~~ 72 (109)
T 2l2q_A 2 PGSMNILLVCGAGMSTS-MLVQRIEKYAKSKNINATIEAIA-ETRLSEVV----DRFDVVLLAPQSRF---NKKRLEEIT 72 (109)
T ss_dssp CCCEEEEEESSSSCSSC-HHHHHHHHHHHHHTCSEEEEEEC-STTHHHHT----TTCSEEEECSCCSS---HHHHHHHHH
T ss_pred CCceEEEEECCChHhHH-HHHHHHHHHHHHCCCCeEEEEec-HHHHHhhc----CCCCEEEECCccHH---HHHHHHHHh
Confidence 334678777 333 6777888888887764 44433 33444433 34899999888766 23333322
Q ss_pred --CCCcEEEEec
Q 008619 87 --KDLPTIITSN 96 (559)
Q Consensus 87 --rdiPVImLSa 96 (559)
.++||++++.
T Consensus 73 ~~~~~pv~~I~~ 84 (109)
T 2l2q_A 73 KPKGIPIEIINT 84 (109)
T ss_dssp HHHTCCEEECCH
T ss_pred cccCCCEEEECh
Confidence 2789998865
No 234
>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A
Probab=43.16 E-value=56 Score=34.74 Aligned_cols=149 Identities=12% Similarity=0.111 Sum_probs=76.5
Q ss_pred CccccCCCccCcCC--CCCcEEEEEeC----CHHHHHHHHHHHhh-CCCEEE-EECCHHHHHH-HhhcCCCCee--EEEE
Q 008619 1 MVCTANDLSAWKDF--PKGLRVLLLDQ----DSSAAAELKFKLEA-MDYIVS-TFYNENEALS-AFSDKPENFH--VAIV 69 (559)
Q Consensus 1 m~~~~~~~s~~~~~--p~glrVLIVDD----D~~~~~~L~~~L~~-~gy~V~-ta~~~~eAL~-~Lre~~~~pD--LVIv 69 (559)
|....+..+....+ ++.+||.||.- -..-...+..+... .+++++ .|....+..+ .... ..+. -+.
T Consensus 21 ~~~~~~~~~~~~~~~~m~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~--~g~~~~~~~- 97 (479)
T 2nvw_A 21 MLANNNKRSKLSTVPSSRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQ--LQLKHATGF- 97 (479)
T ss_dssp CCCCCCTTSGGGSSGGGCCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHH--TTCTTCEEE-
T ss_pred HHhhccccccCCCCCCCCcCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHH--cCCCcceee-
Confidence 44444555554443 34589999998 44444444444443 478877 4543333333 3333 2111 111
Q ss_pred ecCCCCCCCHHHHHHHcCCCcEEEEecC--CCHHHHHHHHHcC------CCEEEeCCC--CHHHHHHHHHHHHHHHHhcC
Q 008619 70 EVTTSNTDGSFKFLETAKDLPTIITSNI--HCLSTMMKCIALG------AVEFLRKPL--SEDKLRNLWQHVVHKAFNAG 139 (559)
Q Consensus 70 Dv~MPd~mdG~eLLe~IrdiPVImLSa~--~d~e~v~kAi~~G------A~DYLvKPi--s~eeL~~iIq~vlrr~~~~~ 139 (559)
.+--++++. .++-+|+++.. .-.+.+..|+++| ..=|+-||+ +.++...+++.+-+......
T Consensus 98 -------~d~~ell~~-~~vD~V~I~tp~~~H~~~~~~al~aG~~~~~~khVl~EKPla~~~~ea~~l~~~a~~~g~~~~ 169 (479)
T 2nvw_A 98 -------DSLESFAQY-KDIDMIVVSVKVPEHYEVVKNILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQQRANLQT 169 (479)
T ss_dssp -------SCHHHHHHC-TTCSEEEECSCHHHHHHHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTCTTCEE
T ss_pred -------CCHHHHhcC-CCCCEEEEcCCcHHHHHHHHHHHHCCCCcCCceeEEEeCCCcCCHHHHHHHHHHHHHcCCeEE
Confidence 223344432 24555555543 3456788999999 778899997 46666665443322110000
Q ss_pred CCCccCCCcHHHHHHHHHHhh
Q 008619 140 GSALSDSLKPVKESVVSMLHL 160 (559)
Q Consensus 140 ~~~~s~~Lt~re~eVl~li~~ 160 (559)
......++.+.-..+.+++..
T Consensus 170 ~v~~~~R~~p~~~~~k~~i~~ 190 (479)
T 2nvw_A 170 IICLQGRKSPYIVRAKELISE 190 (479)
T ss_dssp EEECGGGGCHHHHHHHHHHHT
T ss_pred EEEeccccCHHHHHHHHHHHc
Confidence 011133455655666666553
No 235
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=43.06 E-value=9.8 Score=35.30 Aligned_cols=48 Identities=10% Similarity=0.114 Sum_probs=32.4
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEE
Q 008619 20 VLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIV 69 (559)
Q Consensus 20 VLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIv 69 (559)
|+|||........+.++|++.|+.+..+...+..++.+.. ..+|.||+
T Consensus 4 i~iid~~~s~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~--~~~dglil 51 (195)
T 1qdl_B 4 TLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIER--IDPDRLII 51 (195)
T ss_dssp EEEEECSCSSHHHHHHHHHHTTCEEEEEETTTSCHHHHHH--HCCSEEEE
T ss_pred EEEEECCCchHHHHHHHHHhCCCEEEEEeCCCCCHHHHhh--CCCCEEEE
Confidence 9999976666677888999999888766543222333333 24787776
No 236
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=42.78 E-value=71 Score=30.50 Aligned_cols=67 Identities=10% Similarity=0.162 Sum_probs=46.0
Q ss_pred CHHHHHHHhhcCCCCeeEEEE-ecCCCCCCC--HHHHHHHcC---CCcEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008619 49 NENEALSAFSDKPENFHVAIV-EVTTSNTDG--SFKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (559)
Q Consensus 49 ~~~eAL~~Lre~~~~pDLVIv-Dv~MPd~md--G~eLLe~Ir---diPVImLSa~~d~e~v~kAi~~GA~DYLvK 117 (559)
+..+..+.+.+ ..++.|++ ++.-.+... .+++++.++ ++|||...+-.+.+.+.++++.||+++++=
T Consensus 157 ~~~e~~~~~~~--~G~~~i~~t~~~~~g~~~g~~~~~i~~l~~~~~ipvia~GGI~~~ed~~~~~~~Gadgv~vg 229 (266)
T 2w6r_A 157 LLRDWVVEVEK--RGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAA 229 (266)
T ss_dssp EHHHHHHHHHH--TTCSEEEEEETTTTTTCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHHTCSEEEES
T ss_pred hHHHHHHHHHH--cCCCEEEEEeecCCCCcCCCCHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCHHHHcc
Confidence 34565555555 44665554 443211012 377888775 799999999888899999999999998875
No 237
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=42.70 E-value=88 Score=29.58 Aligned_cols=81 Identities=12% Similarity=0.077 Sum_probs=48.5
Q ss_pred HHHHHHhhCCCEEE-EEC--CHHHHHHHhhcCCCCee-EEEEecCCCCCCC---------HHHHHHHcC---CCcEEEEe
Q 008619 32 ELKFKLEAMDYIVS-TFY--NENEALSAFSDKPENFH-VAIVEVTTSNTDG---------SFKFLETAK---DLPTIITS 95 (559)
Q Consensus 32 ~L~~~L~~~gy~V~-ta~--~~~eAL~~Lre~~~~pD-LVIvDv~MPd~md---------G~eLLe~Ir---diPVImLS 95 (559)
.+.+.+++.|..+. .++ +..++++.+.. . .| +|.+ +..++ .. ++++++.++ ++||++-.
T Consensus 124 ~~~~~~~~~g~~~~~~i~~~t~~e~~~~~~~--~-~d~~i~~-~~~~G-~~g~~~~~~~~~~~~i~~l~~~~~~pi~~~G 198 (248)
T 1geq_A 124 EFTEIAREEGIKTVFLAAPNTPDERLKVIDD--M-TTGFVYL-VSLYG-TTGAREEIPKTAYDLLRRAKRICRNKVAVGF 198 (248)
T ss_dssp HHHHHHHHHTCEEEEEECTTCCHHHHHHHHH--H-CSSEEEE-ECCC--------CCCHHHHHHHHHHHHHCSSCEEEES
T ss_pred HHHHHHHHhCCCeEEEECCCCHHHHHHHHHh--c-CCCeEEE-EECCc-cCCCCCCCChhHHHHHHHHHhhcCCCEEEEe
Confidence 44445555565544 222 45666666654 1 23 4433 22233 22 245666664 78988777
Q ss_pred cCCCHHHHHHHHHcCCCEEEeC
Q 008619 96 NIHCLSTMMKCIALGAVEFLRK 117 (559)
Q Consensus 96 a~~d~e~v~kAi~~GA~DYLvK 117 (559)
+-...+.+.+++.+||+.+++=
T Consensus 199 GI~~~e~i~~~~~~Gad~vivG 220 (248)
T 1geq_A 199 GVSKREHVVSLLKEGANGVVVG 220 (248)
T ss_dssp CCCSHHHHHHHHHTTCSEEEEC
T ss_pred ecCCHHHHHHHHHcCCCEEEEc
Confidence 7777788999999999999974
No 238
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=42.67 E-value=46 Score=32.69 Aligned_cols=35 Identities=20% Similarity=0.061 Sum_probs=21.9
Q ss_pred CCCCCcEEEEEeCCH--------HHHHHHHHHHhhCCCEEEEE
Q 008619 13 DFPKGLRVLLLDQDS--------SAAAELKFKLEAMDYIVSTF 47 (559)
Q Consensus 13 ~~p~glrVLIVDDD~--------~~~~~L~~~L~~~gy~V~ta 47 (559)
....+|+||+|.... .....+...|.+.||+|+.+
T Consensus 16 ~~~~~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~ 58 (406)
T 2gek_A 16 PRGSHMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGHEVSVL 58 (406)
T ss_dssp -----CEEEEECSSCTTSCCHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred cCCCcceEEEEeccCCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 344568999998642 34556777888889988743
No 239
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=42.61 E-value=62 Score=28.98 Aligned_cols=53 Identities=17% Similarity=0.166 Sum_probs=41.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEec
Q 008619 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEV 71 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv 71 (559)
.+.+|.++.... ....|...+...++.+..+.+..+++++|.. .+.|+++.|.
T Consensus 110 ~g~~v~~~~g~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~--G~vDa~~~~~ 162 (239)
T 1lst_A 110 KGKHVGVLQGST-QEAYANDNWRTKGVDVVAYANQDLIYSDLTA--GRLDAALQDE 162 (239)
T ss_dssp TTCEEEEETTSH-HHHHHHHHTGGGTCEEEEESSHHHHHHHHHT--TSCSEEEEEH
T ss_pred CCCEEEEEcCcc-HHHHHHHhcccCCCeEEEcCCHHHHHHHHHc--CCCCEEEeCc
Confidence 357887765554 4455666665557899999999999999999 8899999875
No 240
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}
Probab=42.01 E-value=98 Score=30.89 Aligned_cols=105 Identities=10% Similarity=0.125 Sum_probs=61.6
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcE
Q 008619 14 FPKGLRVLLLDQDSSAAAELKFKLEAM-DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPT 91 (559)
Q Consensus 14 ~p~glrVLIVDDD~~~~~~L~~~L~~~-gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPV 91 (559)
|++.+||.||.--..-.......|... +++++ .|....+..+ . ..+.+-+. .+--++++. .++-+
T Consensus 4 M~~~~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~---~--~~~~~~~~-------~~~~~ll~~-~~vD~ 70 (352)
T 3kux_A 4 MADKIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVH---A--DWPAIPVV-------SDPQMLFND-PSIDL 70 (352)
T ss_dssp TTCCEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHH---T--TCSSCCEE-------SCHHHHHHC-SSCCE
T ss_pred ccCCceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHH---h--hCCCCceE-------CCHHHHhcC-CCCCE
Confidence 555699999998876665344555544 78887 4443233222 2 11111111 123344442 23555
Q ss_pred EEEec--CCCHHHHHHHHHcCCCEEEeCC--CCHHHHHHHHHHH
Q 008619 92 IITSN--IHCLSTMMKCIALGAVEFLRKP--LSEDKLRNLWQHV 131 (559)
Q Consensus 92 ImLSa--~~d~e~v~kAi~~GA~DYLvKP--is~eeL~~iIq~v 131 (559)
|+++. ..-.+.+..|+++|..=|+-|| .+.++....++.+
T Consensus 71 V~i~tp~~~H~~~~~~al~aGkhV~~EKPla~~~~e~~~l~~~a 114 (352)
T 3kux_A 71 IVIPTPNDTHFPLAQSALAAGKHVVVDKPFTVTLSQANALKEHA 114 (352)
T ss_dssp EEECSCTTTHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHH
T ss_pred EEEeCChHHHHHHHHHHHHCCCcEEEECCCcCCHHHHHHHHHHH
Confidence 55544 3456778999999999999999 4677777665543
No 241
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=41.74 E-value=53 Score=32.79 Aligned_cols=33 Identities=15% Similarity=0.122 Sum_probs=21.1
Q ss_pred CcEEEEEeCC----HHHHHHHHHHHhhCCCEEEEECC
Q 008619 17 GLRVLLLDQD----SSAAAELKFKLEAMDYIVSTFYN 49 (559)
Q Consensus 17 glrVLIVDDD----~~~~~~L~~~L~~~gy~V~ta~~ 49 (559)
+||||++-.. ..-...|...|.+.|++|+.++.
T Consensus 20 ~MrIl~~~~~~~Ghv~~~~~La~~L~~~GheV~v~~~ 56 (398)
T 3oti_A 20 HMRVLFVSSPGIGHLFPLIQLAWGFRTAGHDVLIAVA 56 (398)
T ss_dssp CCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEES
T ss_pred cCEEEEEcCCCcchHhHHHHHHHHHHHCCCEEEEecc
Confidence 3699988643 11224567777888998885543
No 242
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=41.63 E-value=90 Score=29.11 Aligned_cols=60 Identities=17% Similarity=0.231 Sum_probs=44.2
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhCCC--EEE-EECCHHHHHHHhhcCC--CCeeEEEEecCC
Q 008619 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDY--IVS-TFYNENEALSAFSDKP--ENFHVAIVEVTT 73 (559)
Q Consensus 14 ~p~glrVLIVDDD~~~~~~L~~~L~~~gy--~V~-ta~~~~eAL~~Lre~~--~~pDLVIvDv~M 73 (559)
++.+.+|..||-++...+..+..+...|+ .|. ...+..+.+..+.... ..||+|++|...
T Consensus 94 ~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~~d~~~ 158 (232)
T 3cbg_A 94 LPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLIFIDADK 158 (232)
T ss_dssp SCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEEEECSCG
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEEEECCCH
Confidence 44456999999999999999988877654 243 6678887777664322 469999999753
No 243
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=41.62 E-value=1.1e+02 Score=34.96 Aligned_cols=108 Identities=14% Similarity=0.128 Sum_probs=73.8
Q ss_pred cEEEEEeCCH----------HHHHHHHHHHhhCCC--EEEEEC---C---HHHHHHHhhcCCCCeeEEEEecCCCCCCCH
Q 008619 18 LRVLLLDQDS----------SAAAELKFKLEAMDY--IVSTFY---N---ENEALSAFSDKPENFHVAIVEVTTSNTDGS 79 (559)
Q Consensus 18 lrVLIVDDD~----------~~~~~L~~~L~~~gy--~V~ta~---~---~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG 79 (559)
++++||.+.+ .....+..++...+. .|.... + ..+....+.+ ..|++++=.. .+ .-|
T Consensus 604 v~LvIvG~g~~~~~~~~e~~~~~~~L~~li~~lgL~~~V~flG~~~~~v~~~eL~~~~~~---aaDvfV~PS~-~E-gfg 678 (816)
T 3s28_A 604 ANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEYKLNGQFRWISSQMDRVRNGELYRYICD---TKGAFVQPAL-YE-AFG 678 (816)
T ss_dssp CEEEEECCCTTSCCCCHHHHHHHHHHHHHHHHTTCBBBEEEECCCCCHHHHHHHHHHHHH---TTCEEEECCS-CB-SSC
T ss_pred eEEEEEeCCCcccccchhhHHHHHHHHHHHHHcCCCCcEEEccCccccCCHHHHHHHHHh---cCeEEEECCC-cc-Ccc
Confidence 6788888776 356677777777664 344433 2 2455555553 2477776433 34 568
Q ss_pred HHHHHHcC-CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008619 80 FKFLETAK-DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 80 ~eLLe~Ir-diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
+.+++.+. .+|||+. ..+. ..+.+..|.+++++.|-+.++|.++|..++.+
T Consensus 679 lvllEAMA~G~PVIas-d~GG---~~EiV~dg~~Gllv~p~D~e~LA~aI~~lL~~ 730 (816)
T 3s28_A 679 LTVVEAMTCGLPTFAT-CKGG---PAEIIVHGKSGFHIDPYHGDQAADTLADFFTK 730 (816)
T ss_dssp HHHHHHHHTTCCEEEE-SSBT---HHHHCCBTTTBEEECTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEe-CCCC---hHHHHccCCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 88888875 8999864 4433 34456789999999999999999999877743
No 244
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=41.19 E-value=50 Score=29.45 Aligned_cols=53 Identities=15% Similarity=0.175 Sum_probs=39.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCC-EEE-EECCHHHHHHHhhcCCCCeeEEEEecC
Q 008619 18 LRVLLLDQDSSAAAELKFKLEAMDY-IVS-TFYNENEALSAFSDKPENFHVAIVEVT 72 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy-~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~ 72 (559)
.+|..||-++...+..+..+...+. .+. ...+..+.+..+.. ..||+|++|.-
T Consensus 68 ~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~--~~fD~i~~~~p 122 (189)
T 3p9n_A 68 ASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTT--SPVDLVLADPP 122 (189)
T ss_dssp SEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCS--SCCSEEEECCC
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccC--CCccEEEECCC
Confidence 4799999999999888888877654 333 66777776655444 67999999853
No 245
>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*
Probab=40.91 E-value=2.6e+02 Score=27.53 Aligned_cols=84 Identities=8% Similarity=0.071 Sum_probs=50.4
Q ss_pred CccCcCCCCCcEEEEEeCCHHHHHHHHHHHhhC-CC-EEEEECCHHHHHHHhhc--CCCCeeEEEEecCCCCCCCHHHHH
Q 008619 8 LSAWKDFPKGLRVLLLDQDSSAAAELKFKLEAM-DY-IVSTFYNENEALSAFSD--KPENFHVAIVEVTTSNTDGSFKFL 83 (559)
Q Consensus 8 ~s~~~~~p~glrVLIVDDD~~~~~~L~~~L~~~-gy-~V~ta~~~~eAL~~Lre--~~~~pDLVIvDv~MPd~mdG~eLL 83 (559)
++.+..|..+.+|||....-.+-..|...|.+. |+ +|+.+......+..+.. ......++..|+. + --.+.
T Consensus 12 ~~~~~~~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~--d---~~~l~ 86 (344)
T 2gn4_A 12 MPNHQNMLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVR--D---LERLN 86 (344)
T ss_dssp ----CCTTTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTT--C---HHHHH
T ss_pred CccHHHhhCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCC--C---HHHHH
Confidence 455667777889999998888888888888777 87 88855544333332221 1135667777764 2 22333
Q ss_pred HHcCCCcEEEEec
Q 008619 84 ETAKDLPTIITSN 96 (559)
Q Consensus 84 e~IrdiPVImLSa 96 (559)
+.+..+-+|+-.+
T Consensus 87 ~~~~~~D~Vih~A 99 (344)
T 2gn4_A 87 YALEGVDICIHAA 99 (344)
T ss_dssp HHTTTCSEEEECC
T ss_pred HHHhcCCEEEECC
Confidence 4445666666554
No 246
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=40.68 E-value=50 Score=32.69 Aligned_cols=73 Identities=22% Similarity=0.121 Sum_probs=0.0
Q ss_pred CcEEEEEe----CCHHHHHHHHHHHhhCCCEEEEECC-------------------------------------------
Q 008619 17 GLRVLLLD----QDSSAAAELKFKLEAMDYIVSTFYN------------------------------------------- 49 (559)
Q Consensus 17 glrVLIVD----DD~~~~~~L~~~L~~~gy~V~ta~~------------------------------------------- 49 (559)
.||||++- .+..-...|...|.+.|++|+.+..
T Consensus 1 ~MrIl~~~~~~~gh~~~~~~la~~L~~~GheV~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (391)
T 3tsa_A 1 HMRVLVVPLPYPTHLMAMVPLCWALQASGHEVLIAAPPELQATAHGAGLTTAGIRGNDRTGDTGGTTQLRFPNPAFGQRD 80 (391)
T ss_dssp CCEEEEECCSCHHHHHTTHHHHHHHHHTTCEEEEEECHHHHHHHHHBTCEEEEC--------------CCSCCGGGGCTT
T ss_pred CcEEEEEcCCCcchhhhHHHHHHHHHHCCCEEEEecChhhHHHHHhCCCceeeecCCccchhhhhhhccccccccccccc
Q ss_pred ----------------------HHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEEEEe
Q 008619 50 ----------------------ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITS 95 (559)
Q Consensus 50 ----------------------~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVImLS 95 (559)
..+..+.+++ .+||+|++| .- .-...++.....+|+|.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~PD~Vv~~---~~-~~~~~~aa~~~giP~v~~~ 142 (391)
T 3tsa_A 81 TEAGRQLWEQTASNVAQSSLDQLPEYLRLAEA--WRPSVLLVD---VC-ALIGRVLGGLLDLPVVLHR 142 (391)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCSEEEEE---TT-CHHHHHHHHHTTCCEEEEC
T ss_pred chhHHHHHHHHHHHHhhcchhhHHHHHHHHHh--cCCCEEEeC---cc-hhHHHHHHHHhCCCEEEEe
No 247
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=40.60 E-value=98 Score=28.03 Aligned_cols=72 Identities=14% Similarity=0.162 Sum_probs=46.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEEEEec
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSN 96 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVImLSa 96 (559)
+++|||..-.-.+-..|...|.+.|++|+.+....+.+..+. ..+.++..|+. + --.+.+.+.++-+|+..+
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~---~~~~~~~~Dl~--d---~~~~~~~~~~~d~vi~~a 75 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIEN---EHLKVKKADVS--S---LDEVCEVCKGADAVISAF 75 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCC---TTEEEECCCTT--C---HHHHHHHHTTCSEEEECC
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhcc---CceEEEEecCC--C---HHHHHHHhcCCCEEEEeC
Confidence 479999999999999999999888999997664433221111 24555555553 2 333444555666666654
No 248
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=40.60 E-value=57 Score=29.68 Aligned_cols=62 Identities=18% Similarity=0.186 Sum_probs=37.7
Q ss_pred CCCCCcEEEEEe--C------------CHHHHHHHHHHHhhCCCEEE---EECCHHHHHH-Hhhc--CCCCeeEEEEecC
Q 008619 13 DFPKGLRVLLLD--Q------------DSSAAAELKFKLEAMDYIVS---TFYNENEALS-AFSD--KPENFHVAIVEVT 72 (559)
Q Consensus 13 ~~p~glrVLIVD--D------------D~~~~~~L~~~L~~~gy~V~---ta~~~~eAL~-~Lre--~~~~pDLVIvDv~ 72 (559)
.-|+.+||.||. | .......|.++|...||+|+ ++.|..+.+. .+++ ....+|+||+-=.
T Consensus 11 ~~~~~~~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittGG 90 (178)
T 3iwt_A 11 NAPKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGG 90 (178)
T ss_dssp --CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESC
T ss_pred cCCCCCEEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecCC
Confidence 346677876653 3 12445678999999999876 5666544433 3321 1256899998655
Q ss_pred CC
Q 008619 73 TS 74 (559)
Q Consensus 73 MP 74 (559)
+.
T Consensus 91 ~g 92 (178)
T 3iwt_A 91 TG 92 (178)
T ss_dssp CS
T ss_pred cc
Confidence 43
No 249
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=40.40 E-value=25 Score=26.72 Aligned_cols=47 Identities=19% Similarity=0.339 Sum_probs=35.6
Q ss_pred ecCHHHHHHHHHHHHHhCCCCCCChHHHhhcCCCCCCHHHHHHhhhhhhh
Q 008619 321 DWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRM 370 (559)
Q Consensus 321 ~Wt~~lh~~Fv~av~~lg~~~a~pk~il~~m~v~~lt~~~v~shlQkyr~ 370 (559)
.||++=+.+++++|++.|..+ =+.|-+.|+. |=|..+++.|-++|-+
T Consensus 11 ~WT~eED~~L~~~v~~~G~~~--W~~IA~~~~~-~Rt~~qcr~r~~~~~~ 57 (58)
T 2elk_A 11 NWGADEELLLIDACETLGLGN--WADIADYVGN-ARTKEECRDHYLKTYI 57 (58)
T ss_dssp CCCHHHHHHHHHHHHHTTTTC--HHHHHHHHCS-SCCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHCcCC--HHHHHHHHCC-CCCHHHHHHHHHHHcc
Confidence 699999999999999999532 2445555531 6788889888887743
No 250
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}
Probab=39.95 E-value=1.8e+02 Score=29.15 Aligned_cols=105 Identities=10% Similarity=0.107 Sum_probs=62.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEEEE
Q 008619 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIIT 94 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVImL 94 (559)
+.++|.||.--..-...+..+....+++++ .|....+..+.... +++ ....+--++++. .++-+|++
T Consensus 4 ~~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~~----~g~-------~~~~~~~~ll~~-~~~D~V~i 71 (359)
T 3e18_A 4 KKYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQ----KGL-------KIYESYEAVLAD-EKVDAVLI 71 (359)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHT----TTC-------CBCSCHHHHHHC-TTCCEEEE
T ss_pred CcCcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHh----cCC-------ceeCCHHHHhcC-CCCCEEEE
Confidence 458999999887666555443333478887 44443444444433 221 110233344442 24444444
Q ss_pred ec--CCCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHH
Q 008619 95 SN--IHCLSTMMKCIALGAVEFLRKPL--SEDKLRNLWQHVV 132 (559)
Q Consensus 95 Sa--~~d~e~v~kAi~~GA~DYLvKPi--s~eeL~~iIq~vl 132 (559)
+. ..-.+.+..|+++|..=|+-||+ +.++....+..+-
T Consensus 72 ~tp~~~h~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~ 113 (359)
T 3e18_A 72 ATPNDSHKELAISALEAGKHVVCEKPVTMTSEDLLAIMDVAK 113 (359)
T ss_dssp CSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHCCCCEEeeCCCcCCHHHHHHHHHHHH
Confidence 43 34567789999999999999997 5677777665443
No 251
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4
Probab=39.65 E-value=48 Score=32.44 Aligned_cols=83 Identities=11% Similarity=-0.092 Sum_probs=54.4
Q ss_pred HHHHHHHh---hCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEec-CCCCC---CCHH-HHHHHcC----CCcEEEEecC
Q 008619 31 AELKFKLE---AMDYIVS-TFYNENEALSAFSDKPENFHVAIVEV-TTSNT---DGSF-KFLETAK----DLPTIITSNI 97 (559)
Q Consensus 31 ~~L~~~L~---~~gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv-~MPd~---mdG~-eLLe~Ir----diPVImLSa~ 97 (559)
..++.++. ..|..+. .+.+.+|+...+.. ..|+|=+.- .+-+. .+.+ ++++.+. ++++|..++-
T Consensus 141 ~~l~~l~~~a~~lGl~~lvev~~~~E~~~a~~~---gad~IGvn~~~l~~~~~dl~~~~~L~~~i~~~~~~~~vIAegGI 217 (254)
T 1vc4_A 141 ELTGAYLEEARRLGLEALVEVHTERELEIALEA---GAEVLGINNRDLATLHINLETAPRLGRLARKRGFGGVLVAESGY 217 (254)
T ss_dssp GGHHHHHHHHHHHTCEEEEEECSHHHHHHHHHH---TCSEEEEESBCTTTCCBCTTHHHHHHHHHHHTTCCSEEEEESCC
T ss_pred HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHc---CCCEEEEccccCcCCCCCHHHHHHHHHhCccccCCCeEEEEcCC
Confidence 44555554 5687755 77888888766655 246664432 22110 2232 3445553 6889998888
Q ss_pred CCHHHHHHHHHcCCCEEEeC
Q 008619 98 HCLSTMMKCIALGAVEFLRK 117 (559)
Q Consensus 98 ~d~e~v~kAi~~GA~DYLvK 117 (559)
.+.+.+.+... ||+++++-
T Consensus 218 ~s~~dv~~l~~-Ga~gvlVG 236 (254)
T 1vc4_A 218 SRKEELKALEG-LFDAVLIG 236 (254)
T ss_dssp CSHHHHHTTTT-TCSEEEEC
T ss_pred CCHHHHHHHHc-CCCEEEEe
Confidence 88999999999 99999973
No 252
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=39.65 E-value=55 Score=31.34 Aligned_cols=66 Identities=6% Similarity=-0.011 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhhCCCEEEEECC------HHHHHHHhhcCCCCeeEEEEecCCCCCCC-HHHHHHHcCCCcEEEEecCC
Q 008619 28 SAAAELKFKLEAMDYIVSTFYN------ENEALSAFSDKPENFHVAIVEVTTSNTDG-SFKFLETAKDLPTIITSNIH 98 (559)
Q Consensus 28 ~~~~~L~~~L~~~gy~V~ta~~------~~eAL~~Lre~~~~pDLVIvDv~MPd~md-G~eLLe~IrdiPVImLSa~~ 98 (559)
.+...+++.+++.||.+..+.. ..+.++.+.. ..+|-||+--.... .. -++.+.. .+|||++....
T Consensus 32 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiI~~~~~~~-~~~~~~~l~~--~iPvV~i~~~~ 104 (303)
T 3kke_A 32 DMFSGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSE--GRVDGVLLQRREDF-DDDMLAAVLE--GVPAVTINSRV 104 (303)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHS--CSSSEEEECCCTTC-CHHHHHHHHT--TSCEEEESCCC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHh--CCCcEEEEecCCCC-cHHHHHHHhC--CCCEEEECCcC
Confidence 3456667777788998875542 2346666767 67998877543333 22 3444443 89999886553
No 253
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=39.58 E-value=45 Score=33.94 Aligned_cols=57 Identities=14% Similarity=0.072 Sum_probs=41.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCC
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAM-DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSN 75 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~-gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd 75 (559)
+.+|.+||=|+.+.+..++.+... +-++. .+.++.+.+..+.. ..||+||+|...+.
T Consensus 113 ~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~--~~fDvIi~D~~~~~ 171 (317)
T 3gjy_A 113 QSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTP--ASRDVIIRDVFAGA 171 (317)
T ss_dssp TCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCT--TCEEEEEECCSTTS
T ss_pred CcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccC--CCCCEEEECCCCcc
Confidence 358999999999999888888643 22233 57788777655434 57999999986554
No 254
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=39.40 E-value=33 Score=35.01 Aligned_cols=91 Identities=12% Similarity=0.179 Sum_probs=60.6
Q ss_pred EEEEeCCHHHHHHHHHHHh----hCC--CEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEEE
Q 008619 20 VLLLDQDSSAAAELKFKLE----AMD--YIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTII 93 (559)
Q Consensus 20 VLIVDDD~~~~~~L~~~L~----~~g--y~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVIm 93 (559)
|||-|.+-...-.+...++ ... -..+.|.+.+|+.+.+.. ..|+|++|-.-|+ +--+.++.++.-..|.
T Consensus 181 vLIKdNHi~~~G~i~~Av~~ar~~~p~~kIeVEv~tl~e~~eAl~a---GaDiImLDn~s~~--~l~~av~~~~~~v~le 255 (300)
T 3l0g_A 181 VLIKDNHIASCGSITLAIQRLRKNLKNEYIAIECDNISQVEESLSN---NVDMILLDNMSIS--EIKKAVDIVNGKSVLE 255 (300)
T ss_dssp EEECHHHHHHHSCHHHHHHHHHHHSSSCCEEEEESSHHHHHHHHHT---TCSEEEEESCCHH--HHHHHHHHHTTSSEEE
T ss_pred EEEcHhHHHHhCCHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHc---CCCEEEECCCCHH--HHHHHHHhhcCceEEE
Confidence 6666665444433333332 222 234588999999999887 4899999974333 2334555555556778
Q ss_pred EecCCCHHHHHHHHHcCCCEEE
Q 008619 94 TSNIHCLSTMMKCIALGAVEFL 115 (559)
Q Consensus 94 LSa~~d~e~v~kAi~~GA~DYL 115 (559)
.|+.-+.+.+.+..+.|++.+-
T Consensus 256 aSGGIt~~~i~~~A~tGVD~Is 277 (300)
T 3l0g_A 256 VSGCVNIRNVRNIALTGVDYIS 277 (300)
T ss_dssp EESSCCTTTHHHHHTTTCSEEE
T ss_pred EECCCCHHHHHHHHHcCCCEEE
Confidence 8998899999999999987553
No 255
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=39.08 E-value=42 Score=32.70 Aligned_cols=52 Identities=17% Similarity=0.124 Sum_probs=35.8
Q ss_pred HHHHHHHcC-CCcEEEEecCC--CH--HHHHHHHHcCCCEEEeCCCC--HHHHHHHHHHH
Q 008619 79 SFKFLETAK-DLPTIITSNIH--CL--STMMKCIALGAVEFLRKPLS--EDKLRNLWQHV 131 (559)
Q Consensus 79 G~eLLe~Ir-diPVImLSa~~--d~--e~v~kAi~~GA~DYLvKPis--~eeL~~iIq~v 131 (559)
|..+++.+. .+|||+..... +. .......+.|+ ++++.+-+ .++|.+.+..+
T Consensus 264 ~~~~~EAma~G~Pvi~~~~~g~~~~q~~~~~~~~~~g~-g~~~~~~d~~~~~la~~i~~l 322 (364)
T 1f0k_A 264 ALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLEKAGA-AKIIEQPQLSVDAVANTLAGW 322 (364)
T ss_dssp HHHHHHHHHHTCCEEECCCCCTTCHHHHHHHHHHHTTS-EEECCGGGCCHHHHHHHHHTC
T ss_pred hHHHHHHHHhCCCEEEeeCCCCchhHHHHHHHHHhCCc-EEEeccccCCHHHHHHHHHhc
Confidence 677787775 89998764332 21 12334567787 99998866 89999888654
No 256
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=39.07 E-value=72 Score=29.93 Aligned_cols=91 Identities=12% Similarity=0.034 Sum_probs=51.6
Q ss_pred HHHHHHHHhhCCCEEEEECC---HH---HHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC--CCcEEEEecCCCHH
Q 008619 30 AAELKFKLEAMDYIVSTFYN---EN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNIHCLS 101 (559)
Q Consensus 30 ~~~L~~~L~~~gy~V~ta~~---~~---eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir--diPVImLSa~~d~e 101 (559)
...++..+...||.+..+.. .+ +.++.+.. ..+|-||+-...++ .-.++++.+. .+|||++......
T Consensus 27 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiI~~~~~~~--~~~~~~~~~~~~~iPvV~~~~~~~~- 101 (293)
T 3l6u_A 27 INAFKAEAKANKYEALVATSQNSRISEREQILEFVH--LKVDAIFITTLDDV--YIGSAIEEAKKAGIPVFAIDRMIRS- 101 (293)
T ss_dssp HHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHH--TTCSEEEEECSCTT--TTHHHHHHHHHTTCCEEEESSCCCC-
T ss_pred HHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHH--cCCCEEEEecCChH--HHHHHHHHHHHcCCCEEEecCCCCC-
Confidence 44566667778999885542 22 45666666 67898887543322 2235556553 8999998665431
Q ss_pred HHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008619 102 TMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 102 ~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
.....|+. .-+.+.-..+.+++++
T Consensus 102 -------~~~~~~V~-~D~~~~g~~~~~~l~~ 125 (293)
T 3l6u_A 102 -------DAVVSSIT-SNNQMIGEQLASYIKN 125 (293)
T ss_dssp -------TTCSEEEE-ECHHHHHHHHHHHHHH
T ss_pred -------CcceeEEe-cCHHHHHHHHHHHHHH
Confidence 01244544 2334444445555555
No 257
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=38.43 E-value=42 Score=32.40 Aligned_cols=39 Identities=13% Similarity=0.118 Sum_probs=32.5
Q ss_pred HHHHHHHcC---CCcEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008619 79 SFKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (559)
Q Consensus 79 G~eLLe~Ir---diPVImLSa~~d~e~v~kAi~~GA~DYLvK 117 (559)
.+++++.++ ++||++-.+-.+.+.+.+++.+||+.+++=
T Consensus 189 ~~~~i~~v~~~~~~pI~vgGGI~~~e~~~~~~~~GAdgvvVG 230 (262)
T 1rd5_A 189 VESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIG 230 (262)
T ss_dssp HHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHhhcCCeEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 455777765 799998888888999999999999999864
No 258
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=38.42 E-value=1.4e+02 Score=25.89 Aligned_cols=68 Identities=13% Similarity=0.193 Sum_probs=45.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCC--EEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHc
Q 008619 18 LRVLLLDQDSSAAAELKFKLEAMDY--IVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA 86 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy--~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~I 86 (559)
.+|..||-++...+..+..+...++ .+. ...+..+.+..+......||+|++|.-.-. ....++++.+
T Consensus 68 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~~-~~~~~~~~~l 138 (187)
T 2fhp_A 68 DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYAK-QEIVSQLEKM 138 (187)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGGG-CCHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEECCCCCc-hhHHHHHHHH
Confidence 5899999999999998888876654 233 567777766544321257999999854222 3344444443
No 259
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=38.17 E-value=56 Score=32.31 Aligned_cols=38 Identities=16% Similarity=0.147 Sum_probs=24.0
Q ss_pred cCCCCCcEEEEEeC----CHHHHHHHHHHHhhCCCEEEEECC
Q 008619 12 KDFPKGLRVLLLDQ----DSSAAAELKFKLEAMDYIVSTFYN 49 (559)
Q Consensus 12 ~~~p~glrVLIVDD----D~~~~~~L~~~L~~~gy~V~ta~~ 49 (559)
+-....||||++-- +-.-...|.+.|.+.|++|+.++.
T Consensus 17 ~~~~~~MRIL~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~t~ 58 (400)
T 4amg_A 17 NLYFQSMRALFITSPGLSHILPTVPLAQALRALGHEVRYATG 58 (400)
T ss_dssp ----CCCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEEC
T ss_pred cCCCCCCeEEEECCCchhHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 33445689999853 333345678888888999986543
No 260
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=38.11 E-value=1.7e+02 Score=27.31 Aligned_cols=65 Identities=18% Similarity=0.279 Sum_probs=39.2
Q ss_pred HHHHHHHHHhhCCCEEEEECC---HH---HHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHc--CCCcEEEEecC
Q 008619 29 AAAELKFKLEAMDYIVSTFYN---EN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA--KDLPTIITSNI 97 (559)
Q Consensus 29 ~~~~L~~~L~~~gy~V~ta~~---~~---eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~I--rdiPVImLSa~ 97 (559)
+...++..++..||.+..+.. .+ ++++.+.. ..+|-||+-....+ ...+.++.+ ..+|+|++...
T Consensus 20 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiI~~~~~~~--~~~~~~~~~~~~~iPvV~~~~~ 92 (290)
T 2fn9_A 20 LAETAKQRAEQLGYEATIFDSQNDTAKESAHFDAIIA--AGYDAIIFNPTDAD--GSIANVKRAKEAGIPVFCVDRG 92 (290)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH--TTCSEEEECCSCTT--TTHHHHHHHHHTTCCEEEESSC
T ss_pred HHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHH--cCCCEEEEecCChH--HHHHHHHHHHHCCCeEEEEecC
Confidence 345566677788999875542 22 34555555 57998887533222 122445555 37999988654
No 261
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=38.09 E-value=54 Score=32.70 Aligned_cols=33 Identities=21% Similarity=0.187 Sum_probs=20.4
Q ss_pred CCcEEEEEeCCH----HHHHHHHHHHhhCCCEEEEEC
Q 008619 16 KGLRVLLLDQDS----SAAAELKFKLEAMDYIVSTFY 48 (559)
Q Consensus 16 ~glrVLIVDDD~----~~~~~L~~~L~~~gy~V~ta~ 48 (559)
.+||||++-... .-...|...|.+.|++|+.++
T Consensus 14 ~~MrIl~~~~~~~gh~~~~~~La~~L~~~GheV~v~~ 50 (398)
T 4fzr_A 14 SHMRILVIAGCSEGFVMPLVPLSWALRAAGHEVLVAA 50 (398)
T ss_dssp -CCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEE
T ss_pred CceEEEEEcCCCcchHHHHHHHHHHHHHCCCEEEEEc
Confidence 347999885331 112356777888899887544
No 262
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=38.06 E-value=1.2e+02 Score=28.57 Aligned_cols=65 Identities=9% Similarity=0.003 Sum_probs=39.4
Q ss_pred HHHHHHHHhhCCCEEEE-EC---CHH---HHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC--CCcEEEEecCC
Q 008619 30 AAELKFKLEAMDYIVST-FY---NEN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNIH 98 (559)
Q Consensus 30 ~~~L~~~L~~~gy~V~t-a~---~~~---eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir--diPVImLSa~~ 98 (559)
...++..++..||.+.. +. +.+ ++++.+.. ..+|.||+--..+. ...+.++.+. .+|||++....
T Consensus 23 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgiIi~~~~~~--~~~~~~~~~~~~~iPvV~~~~~~ 96 (305)
T 3g1w_A 23 LKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIA--KNPAGIAISAIDPV--ELTDTINKAVDAGIPIVLFDSGA 96 (305)
T ss_dssp HHHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHH--HCCSEEEECCSSTT--TTHHHHHHHHHTTCCEEEESSCC
T ss_pred HHHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHH--hCCCEEEEcCCCHH--HHHHHHHHHHHCCCcEEEECCCC
Confidence 34556666677999886 33 333 34555555 57898887443222 2234566553 79999887643
No 263
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=38.02 E-value=84 Score=31.74 Aligned_cols=71 Identities=17% Similarity=0.223 Sum_probs=47.4
Q ss_pred EEEECCHHHHHHHhhcCCCCeeEEEEecC-------------------------CCC-C--------CCHHHHHHHcC--
Q 008619 44 VSTFYNENEALSAFSDKPENFHVAIVEVT-------------------------TSN-T--------DGSFKFLETAK-- 87 (559)
Q Consensus 44 V~ta~~~~eAL~~Lre~~~~pDLVIvDv~-------------------------MPd-~--------mdG~eLLe~Ir-- 87 (559)
|..+.+..||++.+.. ..|+|.+.-. |.+ . ...+++++.++
T Consensus 129 vv~v~~~~Ea~~a~~~---Gad~I~v~g~~gTG~~~~~v~h~~~~~~eir~l~~~~~d~L~t~~~~~~~~~~ll~~i~~~ 205 (297)
T 4adt_A 129 VCGCTNLGEALRRISE---GASMIRTKGEAGTGNIIEAIKHIRTVNNEIKYLCSLDESEVYNFAKKLRAPIDLILLTRKL 205 (297)
T ss_dssp EEEESSHHHHHHHHHH---TCSEEEECCCTTSCCCHHHHHHHHHHHHHHHHHHHSCTTTHHHHHHHHTCCHHHHHHHHHH
T ss_pred EEEeCCHHHHHHHHhC---CCCEEEECCCcCCCchHHHHHHHHHhhhhhhhhccccccccccccccCCCCHHHHHHHHHh
Confidence 3467888888887765 3677777633 111 0 01245566654
Q ss_pred -CCcEEE--EecCCCHHHHHHHHHcCCCEEEeC
Q 008619 88 -DLPTII--TSNIHCLSTMMKCIALGAVEFLRK 117 (559)
Q Consensus 88 -diPVIm--LSa~~d~e~v~kAi~~GA~DYLvK 117 (559)
.+|||+ .++-.+.+.+.+++.+||+.+++=
T Consensus 206 ~~iPVivvA~GGI~t~~dv~~~~~~GAdgVlVG 238 (297)
T 4adt_A 206 KRLPVVNFAAGGIATPADAAMCMQLGMDGVFVG 238 (297)
T ss_dssp TSCSSEEEEESCCCSHHHHHHHHHTTCSCEEES
T ss_pred cCCCeEEEecCCCCCHHHHHHHHHcCCCEEEEh
Confidence 588874 445558899999999999999873
No 264
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=37.89 E-value=63 Score=27.78 Aligned_cols=74 Identities=12% Similarity=0.099 Sum_probs=48.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHc--CCCcEEEEe
Q 008619 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA--KDLPTIITS 95 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~I--rdiPVImLS 95 (559)
-+|+|+.-.. +-..+...|...|+.|+.+..-.+.++.+++ ..+.++..|...+ ++++.+ .+.-+|+++
T Consensus 8 ~~viIiG~G~-~G~~la~~L~~~g~~v~vid~~~~~~~~~~~--~g~~~i~gd~~~~------~~l~~a~i~~ad~vi~~ 78 (140)
T 3fwz_A 8 NHALLVGYGR-VGSLLGEKLLASDIPLVVIETSRTRVDELRE--RGVRAVLGNAANE------EIMQLAHLECAKWLILT 78 (140)
T ss_dssp SCEEEECCSH-HHHHHHHHHHHTTCCEEEEESCHHHHHHHHH--TTCEEEESCTTSH------HHHHHTTGGGCSEEEEC
T ss_pred CCEEEECcCH-HHHHHHHHHHHCCCCEEEEECCHHHHHHHHH--cCCCEEECCCCCH------HHHHhcCcccCCEEEEE
Confidence 4799999865 4556777888889999977766777777777 4566666555332 345543 355566655
Q ss_pred cCCCH
Q 008619 96 NIHCL 100 (559)
Q Consensus 96 a~~d~ 100 (559)
..++.
T Consensus 79 ~~~~~ 83 (140)
T 3fwz_A 79 IPNGY 83 (140)
T ss_dssp CSCHH
T ss_pred CCChH
Confidence 54443
No 265
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=37.82 E-value=46 Score=30.43 Aligned_cols=66 Identities=15% Similarity=0.166 Sum_probs=43.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCC---EEE-EECCHHHHHHHhhcCCCC-eeEEEEecCCCCCCCHHHHHHHc
Q 008619 18 LRVLLLDQDSSAAAELKFKLEAMDY---IVS-TFYNENEALSAFSDKPEN-FHVAIVEVTTSNTDGSFKFLETA 86 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy---~V~-ta~~~~eAL~~Lre~~~~-pDLVIvDv~MPd~mdG~eLLe~I 86 (559)
.+|..||-++...+..+..+...++ .+. ...+..+.+..+.. .. ||+|++|.-... .+.-++++.+
T Consensus 77 ~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~--~~~fD~I~~~~~~~~-~~~~~~l~~~ 147 (201)
T 2ift_A 77 KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQN--QPHFDVVFLDPPFHF-NLAEQAISLL 147 (201)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCS--SCCEEEEEECCCSSS-CHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhcc--CCCCCEEEECCCCCC-ccHHHHHHHH
Confidence 4899999999999999998887765 344 44565554322223 57 999999865333 3333445444
No 266
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=37.81 E-value=1e+02 Score=27.52 Aligned_cols=69 Identities=4% Similarity=0.115 Sum_probs=45.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEEEEec
Q 008619 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSN 96 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVImLSa 96 (559)
|+|||..-.--+-..|...|.+.|++|+.+....+.+..+. ....++..|+.-++ . +.+..+-+|+..+
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~---~~~~~~~~D~~d~~---~----~~~~~~d~vi~~a 69 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH---KDINILQKDIFDLT---L----SDLSDQNVVVDAY 69 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC---SSSEEEECCGGGCC---H----HHHTTCSEEEECC
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc---CCCeEEeccccChh---h----hhhcCCCEEEECC
Confidence 47999998888888888888888999986554444444443 24677777776555 2 3444555555544
No 267
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=37.75 E-value=60 Score=30.80 Aligned_cols=63 Identities=17% Similarity=0.152 Sum_probs=40.5
Q ss_pred HHHHHHHHhhCCCEEEEEC--C---HHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CCcEEEEecCC
Q 008619 30 AAELKFKLEAMDYIVSTFY--N---ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIH 98 (559)
Q Consensus 30 ~~~L~~~L~~~gy~V~ta~--~---~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-diPVImLSa~~ 98 (559)
...+++.+++.||.+..+. + ..+.++.+.. ..+|-||+--...+ . +.++.+. .+|||++....
T Consensus 30 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~~---~-~~~~~~~~~iPvV~i~~~~ 98 (289)
T 3k9c_A 30 VEQIYAAATRRGYDVMLSAVAPSRAEKVAVQALMR--ERCEAAILLGTRFD---T-DELGALADRVPALVVARAS 98 (289)
T ss_dssp HHHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHHTT--TTEEEEEEETCCCC---H-HHHHHHHTTSCEEEESSCC
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHh--CCCCEEEEECCCCC---H-HHHHHHHcCCCEEEEcCCC
Confidence 4455666677899877443 2 4567777766 68998887543333 2 4444443 89999887643
No 268
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=37.68 E-value=64 Score=30.70 Aligned_cols=63 Identities=11% Similarity=0.080 Sum_probs=40.6
Q ss_pred HHHHHHHHHhhCCCEEEEECC-----HHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC--CCcEEEEecC
Q 008619 29 AAAELKFKLEAMDYIVSTFYN-----ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (559)
Q Consensus 29 ~~~~L~~~L~~~gy~V~ta~~-----~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir--diPVImLSa~ 97 (559)
+...++..+.+.||.+..+.. ..+.++.+.. ..+|-||+--.... . +.++.+. .+|||++...
T Consensus 28 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~--~~vdGiIi~~~~~~-~---~~~~~l~~~~iPvV~~~~~ 97 (294)
T 3qk7_A 28 MISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVET--RRVDALIVAHTQPE-D---FRLQYLQKQNFPFLALGRS 97 (294)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHH--TCCSEEEECSCCSS-C---HHHHHHHHTTCCEEEESCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHc--CCCCEEEEeCCCCC-h---HHHHHHHhCCCCEEEECCC
Confidence 345566667778998875432 3456777777 67898887543333 2 4455543 7999988664
No 269
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=37.50 E-value=45 Score=30.74 Aligned_cols=83 Identities=12% Similarity=0.166 Sum_probs=52.8
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhCCCE--EE-EECCHHHHHHHhhc--CCCCeeEEEEecCCCCCCCHHHHHHHc--
Q 008619 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDYI--VS-TFYNENEALSAFSD--KPENFHVAIVEVTTSNTDGSFKFLETA-- 86 (559)
Q Consensus 14 ~p~glrVLIVDDD~~~~~~L~~~L~~~gy~--V~-ta~~~~eAL~~Lre--~~~~pDLVIvDv~MPd~mdG~eLLe~I-- 86 (559)
++.+.+|..||-++...+..++.+...|.. |. ...+..+.+..+.. ....||+|++|.......+-+++++.+
T Consensus 80 ~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~~~ 159 (221)
T 3u81_A 80 LQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGL 159 (221)
T ss_dssp SCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEEEECSCGGGHHHHHHHHHHTTC
T ss_pred CCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEEEEcCCcccchHHHHHHHhccc
Confidence 344679999999999999999998876642 44 67787776655542 014699999997554411223455433
Q ss_pred -CCCcEEEEec
Q 008619 87 -KDLPTIITSN 96 (559)
Q Consensus 87 -rdiPVImLSa 96 (559)
+.--+|++..
T Consensus 160 LkpgG~lv~~~ 170 (221)
T 3u81_A 160 LRKGTVLLADN 170 (221)
T ss_dssp CCTTCEEEESC
T ss_pred cCCCeEEEEeC
Confidence 3334455543
No 270
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=37.49 E-value=51 Score=34.42 Aligned_cols=56 Identities=13% Similarity=0.113 Sum_probs=40.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCC---C------EEE-EECCHHHHHHHhhcCCCCeeEEEEecCC
Q 008619 18 LRVLLLDQDSSAAAELKFKLEAMD---Y------IVS-TFYNENEALSAFSDKPENFHVAIVEVTT 73 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~g---y------~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~M 73 (559)
.+|.+||=|+.+.+..++.|...+ + ++. ...|+.+.++.+.+....||+||+|..-
T Consensus 212 ~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~~~~fDvII~D~~d 277 (364)
T 2qfm_A 212 KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTA 277 (364)
T ss_dssp SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCS
T ss_pred CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhccCCCceEEEECCCC
Confidence 589999999999999988875321 1 233 6788888887652112679999999865
No 271
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=37.05 E-value=1.1e+02 Score=28.70 Aligned_cols=64 Identities=13% Similarity=0.098 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhhCCCEEEEECC------HHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHc--CCCcEEEEecC
Q 008619 28 SAAAELKFKLEAMDYIVSTFYN------ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA--KDLPTIITSNI 97 (559)
Q Consensus 28 ~~~~~L~~~L~~~gy~V~ta~~------~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~I--rdiPVImLSa~ 97 (559)
.+...++..++..||.+..+.. ..+.++.+.. ..+|-||+-....+ . +.++.+ ..+|||++...
T Consensus 25 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~~-~---~~~~~l~~~~iPvV~~~~~ 96 (287)
T 3bbl_A 25 QFLSSMVREAGAVNYFVLPFPFSEDRSQIDIYRDLIRS--GNVDGFVLSSINYN-D---PRVQFLLKQKFPFVAFGRS 96 (287)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCCSSTTCCHHHHHHHHT--TCCSEEEECSCCTT-C---HHHHHHHHTTCCEEEESCC
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCchHHHHHHHHHHHc--CCCCEEEEeecCCC-c---HHHHHHHhcCCCEEEECCc
Confidence 4556677778888999886542 2456777777 67998887543222 2 334444 37999988654
No 272
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=36.95 E-value=1.8e+02 Score=26.89 Aligned_cols=61 Identities=11% Similarity=0.122 Sum_probs=43.8
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCE--EE-EECCHHHHHHHhhcC------------C-CCeeEEEEecCCCC
Q 008619 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYI--VS-TFYNENEALSAFSDK------------P-ENFHVAIVEVTTSN 75 (559)
Q Consensus 15 p~glrVLIVDDD~~~~~~L~~~L~~~gy~--V~-ta~~~~eAL~~Lre~------------~-~~pDLVIvDv~MPd 75 (559)
+.+.+|..||-++...+..+..+...|+. |. ...+..+.+..+... . ..||+|++|...+.
T Consensus 83 ~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~~ 159 (239)
T 2hnk_A 83 PEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKEN 159 (239)
T ss_dssp CTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGGG
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCCHHH
Confidence 43569999999999999999999877652 33 667877766654321 1 36999999975443
No 273
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=36.86 E-value=77 Score=29.54 Aligned_cols=64 Identities=17% Similarity=0.254 Sum_probs=46.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCC--EEE-EECCHHHHHH-HhhcCCCCeeEEEEecCCCCCCCHHHHHHHc
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAMDY--IVS-TFYNENEALS-AFSDKPENFHVAIVEVTTSNTDGSFKFLETA 86 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy--~V~-ta~~~~eAL~-~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~I 86 (559)
+.+|..||-++...+..+..+...++ .|. ...+..+.+. .+ . ..||+|++|..... -.++++.+
T Consensus 95 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~--~~fD~V~~~~~~~~---~~~~l~~~ 162 (232)
T 3ntv_A 95 DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVN-D--KVYDMIFIDAAKAQ---SKKFFEIY 162 (232)
T ss_dssp TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHT-T--SCEEEEEEETTSSS---HHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhc-c--CCccEEEEcCcHHH---HHHHHHHH
Confidence 56999999999999999999988764 243 6677766665 44 3 57999999976444 44455554
No 274
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=36.84 E-value=76 Score=30.33 Aligned_cols=67 Identities=10% Similarity=0.068 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhhCCCEEEEECC---HH---HHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC--CCcEEEEecCC
Q 008619 28 SAAAELKFKLEAMDYIVSTFYN---EN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNIH 98 (559)
Q Consensus 28 ~~~~~L~~~L~~~gy~V~ta~~---~~---eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir--diPVImLSa~~ 98 (559)
.+...++..++..||.+..+.. .. +.++.+.. ..+|-||+....++ ...++++.+. .+|||++....
T Consensus 19 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgiIi~~~~~~--~~~~~~~~~~~~~iPvV~~~~~~ 93 (313)
T 3m9w_A 19 KDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMIN--RGVDVLVIIPYNGQ--VLSNVVKEAKQEGIKVLAYDRMI 93 (313)
T ss_dssp HHHHHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHH--TTCSEEEEECSSTT--SCHHHHHHHHTTTCEEEEESSCC
T ss_pred HHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHH--cCCCEEEEeCCChh--hhHHHHHHHHHCCCeEEEECCcC
Confidence 4566677888888999885542 22 45566666 67998887654333 2235566653 79999887643
No 275
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=36.83 E-value=1.1e+02 Score=28.87 Aligned_cols=65 Identities=15% Similarity=0.183 Sum_probs=41.3
Q ss_pred HHHHHHHHHhhCCCEEEEECC---H---HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC--CCcEEEEecCCC
Q 008619 29 AAAELKFKLEAMDYIVSTFYN---E---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNIHC 99 (559)
Q Consensus 29 ~~~~L~~~L~~~gy~V~ta~~---~---~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir--diPVImLSa~~d 99 (559)
+...++..++..||.+..+.. . .+.++.+.. ..+|-||+--... ..++++.+. .+|+|++.....
T Consensus 26 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~----~~~~~~~~~~~~iPvV~~~~~~~ 98 (291)
T 3egc_A 26 VASGVESEARHKGYSVLLANTAEDIVREREAVGQFFE--RRVDGLILAPSEG----EHDYLRTELPKTFPIVAVNRELR 98 (291)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH--TTCSEEEECCCSS----CCHHHHHSSCTTSCEEEESSCCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHH--CCCCEEEEeCCCC----ChHHHHHhhccCCCEEEEecccC
Confidence 345566677788999886543 2 235566666 6799888743222 234566664 799998876543
No 276
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=36.68 E-value=83 Score=24.43 Aligned_cols=58 Identities=22% Similarity=0.271 Sum_probs=41.8
Q ss_pred CCCCceecCHHHHHHHHHHHHHhCCCCCCChHHHhhcCCCCCCHHHHHHhhhhhhhhhcccCC
Q 008619 315 RKKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHILP 377 (559)
Q Consensus 315 ~kk~r~~Wt~~lh~~Fv~av~~lg~~~a~pk~il~~m~v~~lt~~~v~shlQkyr~~~~~~~~ 377 (559)
.++.|-.||+|=....+++|+++|..+ =+.|...|...|=|-.+++.+ |+.+++..+.
T Consensus 6 ~~~~r~~WT~eED~~L~~~v~~~G~~~--W~~Ia~~~~~~~Rt~~qcr~R---w~~~l~p~i~ 63 (69)
T 1ity_A 6 RARKRQAWLWEEDKNLRSGVRKYGEGN--WSKILLHYKFNNRTSVMLKDR---WRTMKKLKLI 63 (69)
T ss_dssp CSSSCCCCCHHHHHHHHHHHHHHCSSC--HHHHHHHSCCSSCCHHHHHHH---HHHHHHTSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCc--HHHHHHHcCcCCCCHHHHHHH---HHHHcCCCCC
Confidence 355678999999999999999999532 356777776557777777654 5555554443
No 277
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=36.50 E-value=1.1e+02 Score=29.50 Aligned_cols=55 Identities=7% Similarity=0.048 Sum_probs=40.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCC-EEE-EECCHHHHHHHhhcCCCCeeEEEEecC
Q 008619 18 LRVLLLDQDSSAAAELKFKLEAMDY-IVS-TFYNENEALSAFSDKPENFHVAIVEVT 72 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy-~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~ 72 (559)
.+|+.+|-++...+.++..+++.|+ .|. ...+..+....+......||+||+|.-
T Consensus 109 ~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~d~P 165 (274)
T 3ajd_A 109 GTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKILLDAP 165 (274)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEEEEcCC
Confidence 6899999999999999999988876 343 566777655433211257999999964
No 278
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=36.48 E-value=52 Score=33.26 Aligned_cols=68 Identities=9% Similarity=-0.002 Sum_probs=49.9
Q ss_pred EEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEEEEecCCCHHHHHHHHHcCCCEEE
Q 008619 43 IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSNIHCLSTMMKCIALGAVEFL 115 (559)
Q Consensus 43 ~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVImLSa~~d~e~v~kAi~~GA~DYL 115 (559)
..+.+.+.+++.+.+.. ..|+|++|-.-++ +--+..+.++.-..|..|+.-+.+.+.+..+.|++.+-
T Consensus 201 IeVEv~tl~ea~eAl~a---GaD~I~LDn~~~~--~l~~av~~~~~~v~ieaSGGIt~~~i~~~a~tGVD~Is 268 (287)
T 3tqv_A 201 VEVEVTNLDELNQAIAA---KADIVMLDNFSGE--DIDIAVSIARGKVALEVSGNIDRNSIVAIAKTGVDFIS 268 (287)
T ss_dssp EEEEESSHHHHHHHHHT---TCSEEEEESCCHH--HHHHHHHHHTTTCEEEEESSCCTTTHHHHHTTTCSEEE
T ss_pred EEEEeCCHHHHHHHHHc---CCCEEEEcCCCHH--HHHHHHHhhcCCceEEEECCCCHHHHHHHHHcCCCEEE
Confidence 34489999999998877 4899999984433 22334555554456678888888999999999987654
No 279
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=35.96 E-value=1.1e+02 Score=30.14 Aligned_cols=131 Identities=13% Similarity=0.066 Sum_probs=71.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEEEEe
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITS 95 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVImLS 95 (559)
++||.||.--..-...+..+....+++++ .+....+..+.+.+. . .+- + .+--++++. .++-+|+++
T Consensus 3 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~-~--~~~---~-----~~~~~~l~~-~~~D~V~i~ 70 (331)
T 4hkt_A 3 TVRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGA-Y--GCE---V-----RTIDAIEAA-ADIDAVVIC 70 (331)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHH-T--TCE---E-----CCHHHHHHC-TTCCEEEEC
T ss_pred ceEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHH-h--CCC---c-----CCHHHHhcC-CCCCEEEEe
Confidence 47999999876655544444444478877 455433433333331 2 211 1 233445542 134444444
Q ss_pred c--CCCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHHHHHHhcCCCCccCCCcHHHHHHHHHHhh
Q 008619 96 N--IHCLSTMMKCIALGAVEFLRKPL--SEDKLRNLWQHVVHKAFNAGGSALSDSLKPVKESVVSMLHL 160 (559)
Q Consensus 96 a--~~d~e~v~kAi~~GA~DYLvKPi--s~eeL~~iIq~vlrr~~~~~~~~~s~~Lt~re~eVl~li~~ 160 (559)
. ....+.+..++++|..=|+-||+ +.++....+..+-+.... .......+..+.-..+.+++..
T Consensus 71 tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~-~~v~~~~r~~p~~~~~~~~i~~ 138 (331)
T 4hkt_A 71 TPTDTHADLIERFARAGKAIFCEKPIDLDAERVRACLKVVSDTKAK-LMVGFNRRFDPHFMAVRKAIDD 138 (331)
T ss_dssp SCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCC-EEECCGGGGCHHHHHHHHHHHT
T ss_pred CCchhHHHHHHHHHHcCCcEEEecCCCCCHHHHHHHHHHHHHcCCe-EEEcccccCCHHHHHHHHHHHc
Confidence 3 34567788999999999999995 667777655543322110 0111133455666666666554
No 280
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=35.74 E-value=2.2e+02 Score=29.97 Aligned_cols=97 Identities=16% Similarity=0.226 Sum_probs=58.9
Q ss_pred CcEEEEEeCC----HHHHHHHHHHHhhC-CCEEE--EECCHHHHHHHhhcCCCCeeEEEEecCCC---------C-CCCH
Q 008619 17 GLRVLLLDQD----SSAAAELKFKLEAM-DYIVS--TFYNENEALSAFSDKPENFHVAIVEVTTS---------N-TDGS 79 (559)
Q Consensus 17 glrVLIVDDD----~~~~~~L~~~L~~~-gy~V~--ta~~~~eAL~~Lre~~~~pDLVIvDv~MP---------d-~mdG 79 (559)
+..+++++-. ....+.++.+-+.. ++.|+ .+.+.++|..+... ..|.|.+...-. + ....
T Consensus 249 Gvd~v~i~~~~G~~~~~~e~i~~i~~~~p~~pvi~g~~~t~e~a~~l~~~---G~d~I~v~~~~G~~~~~~~~~~~g~p~ 325 (494)
T 1vrd_A 249 GVDVIVIDTAHGHSRRVIETLEMIKADYPDLPVVAGNVATPEGTEALIKA---GADAVKVGVGPGSICTTRVVAGVGVPQ 325 (494)
T ss_dssp TCSEEEECCSCCSSHHHHHHHHHHHHHCTTSCEEEEEECSHHHHHHHHHT---TCSEEEECSSCSTTCHHHHHHCCCCCH
T ss_pred CCCEEEEEecCCchHHHHHHHHHHHHHCCCceEEeCCcCCHHHHHHHHHc---CCCEEEEcCCCCccccccccCCCCccH
Confidence 3455555322 23445555555555 45443 57788888555543 588888743211 0 0112
Q ss_pred HHHHHHc----C--CCcEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008619 80 FKFLETA----K--DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (559)
Q Consensus 80 ~eLLe~I----r--diPVImLSa~~d~e~v~kAi~~GA~DYLv 116 (559)
+.++..+ + ++|||.-..-.+...+.+++.+||+...+
T Consensus 326 ~~~l~~v~~~~~~~~ipvia~GGI~~~~di~kala~GAd~V~i 368 (494)
T 1vrd_A 326 LTAVMECSEVARKYDVPIIADGGIRYSGDIVKALAAGAESVMV 368 (494)
T ss_dssp HHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHhhcCCCEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 3333322 1 69999888888999999999999988775
No 281
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}
Probab=35.70 E-value=39 Score=31.44 Aligned_cols=74 Identities=12% Similarity=0.094 Sum_probs=45.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCC-CEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEEEE
Q 008619 16 KGLRVLLLDQDSSAAAELKFKLEAMD-YIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIIT 94 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~g-y~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVImL 94 (559)
++.+|||..-.--+-..|...|...| +.|+.+....+.+..+.. ....++..|+. + --.+.+.+..+-+|+.
T Consensus 22 ~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~--~~~~~~~~Dl~--d---~~~~~~~~~~~D~vv~ 94 (236)
T 3qvo_A 22 HMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYP--TNSQIIMGDVL--N---HAALKQAMQGQDIVYA 94 (236)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCC--TTEEEEECCTT--C---HHHHHHHHTTCSEEEE
T ss_pred cccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhccccc--CCcEEEEecCC--C---HHHHHHHhcCCCEEEE
Confidence 35688999988888888999998888 898855433333322222 34566666663 2 2233444555666654
Q ss_pred ec
Q 008619 95 SN 96 (559)
Q Consensus 95 Sa 96 (559)
.+
T Consensus 95 ~a 96 (236)
T 3qvo_A 95 NL 96 (236)
T ss_dssp EC
T ss_pred cC
Confidence 44
No 282
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*
Probab=35.65 E-value=1.6e+02 Score=30.35 Aligned_cols=102 Identities=9% Similarity=-0.012 Sum_probs=59.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhC--CCEEE-EECC-HHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEE
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAM--DYIVS-TFYN-ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTI 92 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~--gy~V~-ta~~-~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVI 92 (559)
.+||.||.-- +.+.-...|.+. +++++ .|.. .+.|-+...+ ..+. +..|+. + + +.++-++
T Consensus 7 ~~rv~VvG~G--~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~--~gv~-~~~~~~--~------l---~~~~D~v 70 (372)
T 4gmf_A 7 KQRVLIVGAK--FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHA--FGIP-LYTSPE--Q------I---TGMPDIA 70 (372)
T ss_dssp CEEEEEECST--TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHH--TTCC-EESSGG--G------C---CSCCSEE
T ss_pred CCEEEEEehH--HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHH--hCCC-EECCHH--H------H---hcCCCEE
Confidence 4899999975 333333444443 68877 4543 3444444444 2222 222221 1 1 2244444
Q ss_pred EEecCC--C----HHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008619 93 ITSNIH--C----LSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 93 mLSa~~--d----~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
++.... - .+.+.+|+++|..=++-||++.+|....++.+-++
T Consensus 71 ~i~~p~~~h~~~~~~~a~~al~aGkhVl~EKPl~~~ea~~l~~~A~~~ 118 (372)
T 4gmf_A 71 CIVVRSTVAGGAGTQLARHFLARGVHVIQEHPLHPDDISSLQTLAQEQ 118 (372)
T ss_dssp EECCC--CTTSHHHHHHHHHHHTTCEEEEESCCCHHHHHHHHHHHHHH
T ss_pred EEECCCcccchhHHHHHHHHHHcCCcEEEecCCCHHHHHHHHHHHHHc
Confidence 443222 1 57899999999999999999999888776655443
No 283
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=35.59 E-value=28 Score=33.00 Aligned_cols=67 Identities=9% Similarity=0.062 Sum_probs=44.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEEEEec
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSN 96 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVImLSa 96 (559)
+++|||... -.+-..|...|...||+|+.+....+....+.. ..+.++..|+. + .+ +.++-+|+..+
T Consensus 5 ~~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~--~~~~~~~~D~~--d-~~-------~~~~d~vi~~a 71 (286)
T 3ius_A 5 TGTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRA--SGAEPLLWPGE--E-PS-------LDGVTHLLIST 71 (286)
T ss_dssp CCEEEEETC-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHH--TTEEEEESSSS--C-CC-------CTTCCEEEECC
T ss_pred cCcEEEECC-cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhh--CCCeEEEeccc--c-cc-------cCCCCEEEECC
Confidence 479999997 778888888887779999965544444455554 45677766663 3 22 44555565554
No 284
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=35.29 E-value=75 Score=29.86 Aligned_cols=55 Identities=7% Similarity=-0.044 Sum_probs=43.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCC
Q 008619 18 LRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTS 74 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MP 74 (559)
-+|.+||-++...+..++.....+..+. ...++++.+..+.. ..||.|+.|....
T Consensus 84 ~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~FD~i~~D~~~~ 139 (236)
T 3orh_A 84 DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPD--GHFDGILYDTYPL 139 (236)
T ss_dssp EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCT--TCEEEEEECCCCC
T ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccc--cCCceEEEeeeec
Confidence 3688999999999999998888777665 56777776655555 6799999997543
No 285
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=35.09 E-value=79 Score=31.75 Aligned_cols=133 Identities=15% Similarity=0.041 Sum_probs=71.2
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EEC-CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcE
Q 008619 15 PKGLRVLLLDQDSSAAAELKFKLEAM-DYIVS-TFY-NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPT 91 (559)
Q Consensus 15 p~glrVLIVDDD~~~~~~L~~~L~~~-gy~V~-ta~-~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPV 91 (559)
|+.+||.||.--..-...+...|... +++++ .|. +.+.+-+.... .....+ .| --++++. .++-+
T Consensus 25 m~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~--~g~~~~-~~--------~~~ll~~-~~~D~ 92 (350)
T 3rc1_A 25 ANPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTER--FGGEPV-EG--------YPALLER-DDVDA 92 (350)
T ss_dssp -CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHH--HCSEEE-ES--------HHHHHTC-TTCSE
T ss_pred CCceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHH--cCCCCc-CC--------HHHHhcC-CCCCE
Confidence 34589999998876663344444444 78877 333 44444444443 122211 11 2223321 13445
Q ss_pred EEEec--CCCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHHHHHHhcCCCCccCCCcHHHHHHHHHHhh
Q 008619 92 IITSN--IHCLSTMMKCIALGAVEFLRKPL--SEDKLRNLWQHVVHKAFNAGGSALSDSLKPVKESVVSMLHL 160 (559)
Q Consensus 92 ImLSa--~~d~e~v~kAi~~GA~DYLvKPi--s~eeL~~iIq~vlrr~~~~~~~~~s~~Lt~re~eVl~li~~ 160 (559)
|+++. ..-.+.+..|+++|..=|+-||+ +.++....++.+-+.... .......++.+.-..+.+++..
T Consensus 93 V~i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~ea~~l~~~a~~~g~~-~~v~~~~R~~p~~~~~k~~i~~ 164 (350)
T 3rc1_A 93 VYVPLPAVLHAEWIDRALRAGKHVLAEKPLTTDRPQAERLFAVARERGLL-LMENFMFLHHPQHRQVADMLDE 164 (350)
T ss_dssp EEECCCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCC-EEEECGGGGCTHHHHHHHHHHT
T ss_pred EEECCCcHHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCE-EEEEecccCCHHHHHHHHHHhc
Confidence 55543 34566788999999999999997 567777665544322110 0011123444555555555543
No 286
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0
Probab=34.81 E-value=67 Score=30.34 Aligned_cols=54 Identities=17% Similarity=0.227 Sum_probs=39.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC-------CHHHHHHHhhcCCCCeeEEEEecCC
Q 008619 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFY-------NENEALSAFSDKPENFHVAIVEVTT 73 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~-------~~~eAL~~Lre~~~~pDLVIvDv~M 73 (559)
|+|||....-.+-..|...|.+.||+|+.+. +.+...+.+.. ..+|+||--...
T Consensus 6 m~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~D~~d~~~~~~~~~~--~~~d~vi~~a~~ 66 (287)
T 3sc6_A 6 ERVIITGANGQLGKQLQEELNPEEYDIYPFDKKLLDITNISQVQQVVQE--IRPHIIIHCAAY 66 (287)
T ss_dssp EEEEEESTTSHHHHHHHHHSCTTTEEEEEECTTTSCTTCHHHHHHHHHH--HCCSEEEECCCC
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCEEEEecccccCCCCHHHHHHHHHh--cCCCEEEECCcc
Confidence 5899999988899999999988899998764 34444444444 358998865544
No 287
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=34.78 E-value=1.2e+02 Score=28.25 Aligned_cols=67 Identities=7% Similarity=-0.042 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhhCCCEEEEECC---H---HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEEEEecC
Q 008619 28 SAAAELKFKLEAMDYIVSTFYN---E---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSNI 97 (559)
Q Consensus 28 ~~~~~L~~~L~~~gy~V~ta~~---~---~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVImLSa~ 97 (559)
.+...+...++..||.+..+.. . .+.++.+.. ..+|.||+-..... ...++.+.....+|+|++...
T Consensus 38 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgii~~~~~~~-~~~~~~l~~~~~iPvV~~~~~ 110 (296)
T 3brq_A 38 ELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLD--LRCDAIMIYPRFLS-VDEIDDIIDAHSQPIMVLNRR 110 (296)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCTTSHHHHHHHHHHHHH--TTCSEEEEECSSSC-HHHHHHHHHTCSSCEEEESCC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHh--cCCCEEEEecCCCC-hHHHHHHHhcCCCCEEEEccc
Confidence 4556677777888999886643 2 234556666 57887777543222 122333322247999988654
No 288
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=34.75 E-value=81 Score=34.90 Aligned_cols=109 Identities=7% Similarity=0.150 Sum_probs=70.2
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHhhCCCEEEEE---CCHHHHHHHhhcCCCCeeEEEEecCCCCCCCH-HHHHHHcC-
Q 008619 17 GLRVLLL----DQDSSAAAELKFKLEAMDYIVSTF---YNENEALSAFSDKPENFHVAIVEVTTSNTDGS-FKFLETAK- 87 (559)
Q Consensus 17 glrVLIV----DDD~~~~~~L~~~L~~~gy~V~ta---~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG-~eLLe~Ir- 87 (559)
.-+||++ |-+..=..++..+|+..||+|+.. -..++.++.+.+ ..+|+|.+-..+...+.. -++++.++
T Consensus 98 ~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~vP~e~iv~aa~~--~~~diVgLS~l~t~~~~~m~~~i~~Lr~ 175 (579)
T 3bul_A 98 NGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKE--VNADLIGLSGLITPSLDEMVNVAKEMER 175 (579)
T ss_dssp SCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHHHHHH--HTCSEEEEECCSTHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEEecCCCCHHHHHHHHHHHHH
Confidence 4578887 566677788889999999999843 468888888888 789999998876541111 22444443
Q ss_pred ---CCcEEEEecCCCHHHHHHHHHc-----CCCEEEeCCCCHHHHHHHHHHHH
Q 008619 88 ---DLPTIITSNIHCLSTMMKCIAL-----GAVEFLRKPLSEDKLRNLWQHVV 132 (559)
Q Consensus 88 ---diPVImLSa~~d~e~v~kAi~~-----GA~DYLvKPis~eeL~~iIq~vl 132 (559)
++||++--.....+... .+. ||+.|.. +..+-....+.++
T Consensus 176 ~g~~i~ViVGGa~~~~~~a~--~~i~p~~~GAD~ya~---DA~~Av~~a~~l~ 223 (579)
T 3bul_A 176 QGFTIPLLIGGATTSKAHTA--VKIEQNYSGPTVYVQ---NASRTVGVVAALL 223 (579)
T ss_dssp TTCCSCEEEESTTCCHHHHH--HHTGGGCSSCEEECC---SHHHHHHHHHHHT
T ss_pred cCCCCeEEEEccccchhhhh--hhhhhcccCCeEEEC---CHHHHHHHHHHHh
Confidence 68876655544544331 233 8887764 4444444444443
No 289
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=34.72 E-value=1.1e+02 Score=29.89 Aligned_cols=38 Identities=16% Similarity=0.230 Sum_probs=30.3
Q ss_pred HHHHHHcC---CCcEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008619 80 FKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (559)
Q Consensus 80 ~eLLe~Ir---diPVImLSa~~d~e~v~kAi~~GA~DYLvK 117 (559)
.++++.++ ++||++=.+-.+.+.+.+++..||+.+++=
T Consensus 194 ~~~i~~lr~~~~~pi~vggGI~t~e~~~~~~~agAD~vVVG 234 (268)
T 1qop_A 194 HHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISG 234 (268)
T ss_dssp HHHHHHHHHTTCCCEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHhccCCcEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 56777665 789877666667899999999999999975
No 290
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=34.70 E-value=1.1e+02 Score=28.97 Aligned_cols=66 Identities=12% Similarity=0.264 Sum_probs=45.7
Q ss_pred CHHHHHHHhhcCCCCee-EEEEecCCCCCCCH---HHHHHHcC---CCcEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008619 49 NENEALSAFSDKPENFH-VAIVEVTTSNTDGS---FKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (559)
Q Consensus 49 ~~~eAL~~Lre~~~~pD-LVIvDv~MPd~mdG---~eLLe~Ir---diPVImLSa~~d~e~v~kAi~~GA~DYLvK 117 (559)
+..+..+.+.+ ...| |.++|..... ... +++++.++ ++|||+...-.+.+.+.+++..||+..++=
T Consensus 32 d~~~~a~~~~~--~Gad~i~v~d~~~~~-~~~~~~~~~i~~i~~~~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~lg 104 (252)
T 1ka9_F 32 DPVEAARAYDE--AGADELVFLDISATH-EERAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVN 104 (252)
T ss_dssp CHHHHHHHHHH--HTCSCEEEEECCSST-TCHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred CHHHHHHHHHH--cCCCEEEEEcCCccc-cCccccHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 55566666655 3344 4556765433 222 45566664 799999999899999999999999988763
No 291
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=34.58 E-value=1.3e+02 Score=28.27 Aligned_cols=64 Identities=11% Similarity=0.052 Sum_probs=37.9
Q ss_pred HHHHHHHHHhhCCCEEEEECC---H---HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEEEEecC
Q 008619 29 AAAELKFKLEAMDYIVSTFYN---E---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSNI 97 (559)
Q Consensus 29 ~~~~L~~~L~~~gy~V~ta~~---~---~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVImLSa~ 97 (559)
+...++..++..||.+..+.. . .+.++.+.+ ..+|-||+-....+ ..-++.+. ..+|||++...
T Consensus 26 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiI~~~~~~~-~~~~~~l~--~~iPvV~~~~~ 95 (285)
T 3c3k_A 26 VVKGIEKTAEKNGYRILLCNTESDLARSRSCLTLLSG--KMVDGVITMDALSE-LPELQNII--GAFPWVQCAEY 95 (285)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHTHHHHT--TCCSEEEECCCGGG-HHHHHHHH--TTSSEEEESSC
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHh--CCCCEEEEeCCCCC-hHHHHHHh--cCCCEEEEccc
Confidence 445566677778999875532 2 234555555 67998887432111 12233343 68999988654
No 292
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=34.58 E-value=2.1e+02 Score=30.68 Aligned_cols=98 Identities=17% Similarity=0.222 Sum_probs=62.0
Q ss_pred CcEEEEEe----CCHHHHHHHHHHHhhC-CCEEE--EECCHHHHHHHhhcCCCCeeEEEEecCCCCC----------CCH
Q 008619 17 GLRVLLLD----QDSSAAAELKFKLEAM-DYIVS--TFYNENEALSAFSDKPENFHVAIVEVTTSNT----------DGS 79 (559)
Q Consensus 17 glrVLIVD----DD~~~~~~L~~~L~~~-gy~V~--ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~----------mdG 79 (559)
+..++++| +.....+.++.+-+.. +..|+ .+.+.+.|..++.. ..|.|++...-... ...
T Consensus 243 G~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~g~v~t~e~a~~l~~a---GaD~I~Vg~g~Gs~~~tr~~~g~g~p~ 319 (496)
T 4fxs_A 243 GVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEA---GVSAVKVGIGPGSICTTRIVTGVGVPQ 319 (496)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEEEEECSHHHHHHHHHH---TCSEEEECSSCCTTBCHHHHHCCCCCH
T ss_pred cCceEEeccccccchHHHHHHHHHHHHCCCceEEEcccCcHHHHHHHHHh---CCCEEEECCCCCcCcccccccCCCccH
Confidence 45567776 3344455555555555 43333 57788888776655 57888875321110 112
Q ss_pred HHHHHH----cC--CCcEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008619 80 FKFLET----AK--DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (559)
Q Consensus 80 ~eLLe~----Ir--diPVImLSa~~d~e~v~kAi~~GA~DYLvK 117 (559)
+.++.. ++ ++|||.-.+-.+...+.+++.+||+..++=
T Consensus 320 ~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GAd~V~iG 363 (496)
T 4fxs_A 320 ITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVG 363 (496)
T ss_dssp HHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHHHcCCCeEEec
Confidence 233333 22 699998778888999999999999988864
No 293
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*
Probab=34.56 E-value=3.7e+02 Score=26.97 Aligned_cols=88 Identities=13% Similarity=0.139 Sum_probs=58.8
Q ss_pred CCHHHHHHHHHHHhhC-CCEEE--EECCHHHHHHHhhcCCCCeeEEEEecCCCCC-----------CC--HHHHHHHcC-
Q 008619 25 QDSSAAAELKFKLEAM-DYIVS--TFYNENEALSAFSDKPENFHVAIVEVTTSNT-----------DG--SFKFLETAK- 87 (559)
Q Consensus 25 DD~~~~~~L~~~L~~~-gy~V~--ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~-----------md--G~eLLe~Ir- 87 (559)
+.....+.++.+-+.. +..|+ .+.+.++|...+.. ..|.|++.-+ ++. .. -++++..+.
T Consensus 132 ~~~~~~~~i~~lr~~~~~~~vi~G~v~s~e~A~~a~~a---Gad~Ivvs~h-gG~~~~~~~~~~~g~~g~~~~~l~~v~~ 207 (336)
T 1ypf_A 132 HSNAVINMIQHIKKHLPESFVIAGNVGTPEAVRELENA---GADATKVGIG-PGKVCITKIKTGFGTGGWQLAALRWCAK 207 (336)
T ss_dssp CSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHH---TCSEEEECSS-CSTTCHHHHHHSCSSTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHc---CCCEEEEecC-CCceeecccccCcCCchhHHHHHHHHHH
Confidence 3345556666665555 34444 36788888777665 4788887332 110 00 245555553
Q ss_pred --CCcEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008619 88 --DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (559)
Q Consensus 88 --diPVImLSa~~d~e~v~kAi~~GA~DYLv 116 (559)
++|||.-..-.+...+.+++.+||+...+
T Consensus 208 ~~~ipVIa~GGI~~g~Dv~kalalGAdaV~i 238 (336)
T 1ypf_A 208 AASKPIIADGGIRTNGDVAKSIRFGATMVMI 238 (336)
T ss_dssp TCSSCEEEESCCCSTHHHHHHHHTTCSEEEE
T ss_pred HcCCcEEEeCCCCCHHHHHHHHHcCCCEEEe
Confidence 79999988888899999999999998876
No 294
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=34.51 E-value=1.2e+02 Score=28.55 Aligned_cols=67 Identities=15% Similarity=0.272 Sum_probs=44.8
Q ss_pred CHHHHHHHhhcCCCCee-EEEEecCCCCCC--CHHHHHHHcC---CCcEEEEecCCCHHHHHHHHHc---CCCEEEeC
Q 008619 49 NENEALSAFSDKPENFH-VAIVEVTTSNTD--GSFKFLETAK---DLPTIITSNIHCLSTMMKCIAL---GAVEFLRK 117 (559)
Q Consensus 49 ~~~eAL~~Lre~~~~pD-LVIvDv~MPd~m--dG~eLLe~Ir---diPVImLSa~~d~e~v~kAi~~---GA~DYLvK 117 (559)
+..+....+.+ ..+| ++++++.-.... -.+++++.++ ++|||+...-.+.+.+.++++. ||+.+++=
T Consensus 147 ~~~e~~~~~~~--~G~~~i~~~~~~~~~~~~g~~~~~~~~i~~~~~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~vG 222 (244)
T 1vzw_A 147 DLYETLDRLNK--EGCARYVVTDIAKDGTLQGPNLELLKNVCAATDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVG 222 (244)
T ss_dssp BHHHHHHHHHH--TTCCCEEEEEC-------CCCHHHHHHHHHTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEEC
T ss_pred CHHHHHHHHHh--CCCCEEEEeccCcccccCCCCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHhhccCCCceeeee
Confidence 55666566666 4577 455665422201 1356777764 7999998888888999999999 99998863
No 295
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=34.47 E-value=1.5e+02 Score=29.41 Aligned_cols=132 Identities=10% Similarity=0.011 Sum_probs=73.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhh-CCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEEE
Q 008619 16 KGLRVLLLDQDSSAAAELKFKLEA-MDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTII 93 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~-~gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVIm 93 (559)
+++||.||.--..-...+..+... .+++++ .|....+..+.+.+ .+.+-.. .+--++++. .++-+|+
T Consensus 12 ~~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~---~~~~~~~-------~~~~~ll~~-~~~D~V~ 80 (354)
T 3q2i_A 12 RKIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVE---RTGARGH-------ASLTDMLAQ-TDADIVI 80 (354)
T ss_dssp SCEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHH---HHCCEEE-------SCHHHHHHH-CCCSEEE
T ss_pred CcceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHH---HcCCcee-------CCHHHHhcC-CCCCEEE
Confidence 458999999876666666555554 478877 44443343333333 1222111 233445543 2455555
Q ss_pred EecC--CCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHHHHHHhcCCCCccCCCcHHHHHHHHHHh
Q 008619 94 TSNI--HCLSTMMKCIALGAVEFLRKPL--SEDKLRNLWQHVVHKAFNAGGSALSDSLKPVKESVVSMLH 159 (559)
Q Consensus 94 LSa~--~d~e~v~kAi~~GA~DYLvKPi--s~eeL~~iIq~vlrr~~~~~~~~~s~~Lt~re~eVl~li~ 159 (559)
++.. ...+.+..++++|..=|+-||+ +.++....++.+-+..... ......+..+.-..+.+++.
T Consensus 81 i~tp~~~h~~~~~~al~~gk~v~~EKP~a~~~~~~~~l~~~a~~~g~~~-~v~~~~r~~p~~~~~k~~i~ 149 (354)
T 3q2i_A 81 LTTPSGLHPTQSIECSEAGFHVMTEKPMATRWEDGLEMVKAADKAKKHL-FVVKQNRRNATLQLLKRAMQ 149 (354)
T ss_dssp ECSCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCE-EECCGGGGSHHHHHHHHHHH
T ss_pred ECCCcHHHHHHHHHHHHCCCCEEEeCCCcCCHHHHHHHHHHHHHhCCeE-EEEEcccCCHHHHHHHHHHh
Confidence 5443 3456788999999999999996 5677776655443321111 01112344455555555554
No 296
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=34.28 E-value=15 Score=36.96 Aligned_cols=90 Identities=19% Similarity=0.297 Sum_probs=58.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHH--HHHHHcCC-CcEEEE
Q 008619 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSF--KFLETAKD-LPTIIT 94 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~--eLLe~Ird-iPVImL 94 (559)
|+|.||-....-.+.+.+.|++.|++|.......+.+ ..+|+||+ + + +||. ..++.+.+ +|||-+
T Consensus 30 mki~iv~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~-------~~~DlvIv---l-G-GDGT~L~aa~~~~~~~PilGI 97 (278)
T 1z0s_A 30 MRAAVVYKTDGHVKRIEEALKRLEVEVELFNQPSEEL-------ENFDFIVS---V-G-GDGTILRILQKLKRCPPIFGI 97 (278)
T ss_dssp CEEEEEESSSTTHHHHHHHHHHTTCEEEEESSCCGGG-------GGSSEEEE---E-E-CHHHHHHHHTTCSSCCCEEEE
T ss_pred eEEEEEeCCcHHHHHHHHHHHHCCCEEEEcccccccc-------CCCCEEEE---E-C-CCHHHHHHHHHhCCCCcEEEE
Confidence 6788885321117788999999999988765432221 24798887 2 2 4663 33333434 899887
Q ss_pred ecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008619 95 SNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 95 Sa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
.. |=.+||. +++.+++..++..++.
T Consensus 98 N~-------------G~lGFLt-~~~~~~~~~~l~~l~~ 122 (278)
T 1z0s_A 98 NT-------------GRVGLLT-HASPENFEVELKKAVE 122 (278)
T ss_dssp EC-------------SSSCTTC-CBBTTBCHHHHHHHHH
T ss_pred CC-------------CCCcccc-ccCHHHHHHHHHHHHh
Confidence 64 5566776 4677788888877776
No 297
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=34.16 E-value=92 Score=31.98 Aligned_cols=92 Identities=10% Similarity=0.041 Sum_probs=59.8
Q ss_pred EEEEEeCCHHHHHHHHHHHh----hCCC--EEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEE
Q 008619 19 RVLLLDQDSSAAAELKFKLE----AMDY--IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTI 92 (559)
Q Consensus 19 rVLIVDDD~~~~~~L~~~L~----~~gy--~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVI 92 (559)
-|||-|.+-...-.+...++ ..++ ..+.+.+.+++.+.+.. ..|+|.+|-.-++ +--+..+.++.-..|
T Consensus 204 ~vlikdnHi~~~G~i~~Av~~ar~~~p~~kIeVEVdtldea~eAl~a---GaD~I~LDn~~~~--~l~~av~~l~~~v~i 278 (320)
T 3paj_A 204 AYLIKENHIIACGGIRQAISTAKQLNPGKPVEVETETLAELEEAISA---GADIIMLDNFSLE--MMREAVKINAGRAAL 278 (320)
T ss_dssp CEEECHHHHHHHTSHHHHHHHHHHHSTTSCEEEEESSHHHHHHHHHT---TCSEEEEESCCHH--HHHHHHHHHTTSSEE
T ss_pred hhccHHHHHHHhCCHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHc---CCCEEEECCCCHH--HHHHHHHHhCCCCeE
Confidence 46777766444333333332 2332 34588999999888876 4799999873332 122333444444567
Q ss_pred EEecCCCHHHHHHHHHcCCCEEE
Q 008619 93 ITSNIHCLSTMMKCIALGAVEFL 115 (559)
Q Consensus 93 mLSa~~d~e~v~kAi~~GA~DYL 115 (559)
..|+.-+.+.+.+....|++.|-
T Consensus 279 eaSGGIt~~~I~~~a~tGVD~is 301 (320)
T 3paj_A 279 ENSGNITLDNLKECAETGVDYIS 301 (320)
T ss_dssp EEESSCCHHHHHHHHTTTCSEEE
T ss_pred EEECCCCHHHHHHHHHcCCCEEE
Confidence 78899999999999999996554
No 298
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=34.12 E-value=92 Score=28.37 Aligned_cols=52 Identities=15% Similarity=0.171 Sum_probs=37.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCC-EEE-EECCHHHHHHHhhcCCCCeeEEEEecC
Q 008619 18 LRVLLLDQDSSAAAELKFKLEAMDY-IVS-TFYNENEALSAFSDKPENFHVAIVEVT 72 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy-~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~ 72 (559)
.+|..||-++...+..+..+...++ .+. ...+..+.+. .....||+|++|.-
T Consensus 78 ~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~---~~~~~fD~V~~~~p 131 (202)
T 2fpo_A 78 AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLA---QKGTPHNIVFVDPP 131 (202)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHS---SCCCCEEEEEECCS
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHh---hcCCCCCEEEECCC
Confidence 3899999999999999998887765 344 4456555432 22257999999864
No 299
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=34.12 E-value=75 Score=30.36 Aligned_cols=69 Identities=10% Similarity=0.164 Sum_probs=46.9
Q ss_pred CHHHHHHHhhcCCCCee-EEEEecCCCCC--CCHHHHHHHcC---CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCC
Q 008619 49 NENEALSAFSDKPENFH-VAIVEVTTSNT--DGSFKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLRKPL 119 (559)
Q Consensus 49 ~~~eAL~~Lre~~~~pD-LVIvDv~MPd~--mdG~eLLe~Ir---diPVImLSa~~d~e~v~kAi~~GA~DYLvKPi 119 (559)
+..+..+.+.+ ...| |.|+|...... ..-+++++.++ ++|||+...-.+.+.+.+++..||+..++=-.
T Consensus 31 ~~~~~a~~~~~--~Ga~~i~v~d~~~~~~~~g~~~~~i~~i~~~~~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg~~ 105 (266)
T 2w6r_A 31 LLRDWVVEVEK--RGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADKALAASV 105 (266)
T ss_dssp EHHHHHHHHHH--HTCSEEEEEETTTSSCSSCCCHHHHHHHGGGCCSCEEEESCCCSTHHHHHHHHHTCSEEECCCC
T ss_pred CHHHHHHHHHH--CCCCEEEEEecCcccCCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCcHhhhhHH
Confidence 45566666655 3454 55567654320 11267888775 79999987777888899999999999887533
No 300
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=34.01 E-value=99 Score=28.88 Aligned_cols=66 Identities=12% Similarity=0.097 Sum_probs=38.7
Q ss_pred HHHHHHHHHhhCCCEEEEEC---CHH---HHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEEEEecC
Q 008619 29 AAAELKFKLEAMDYIVSTFY---NEN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSNI 97 (559)
Q Consensus 29 ~~~~L~~~L~~~gy~V~ta~---~~~---eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVImLSa~ 97 (559)
+...++..++..||.+..+. +.+ +.++.+.. ..+|-||+...... ..-.+.+.....+|+|++...
T Consensus 25 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgii~~~~~~~-~~~~~~l~~~~~iPvV~~~~~ 96 (289)
T 1dbq_A 25 IIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQ--KRVDGLLVMCSEYP-EPLLAMLEEYRHIPMVVMDWG 96 (289)
T ss_dssp HHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHH--TTCSEEEEECSCCC-HHHHHHHHHTTTSCEEEEECS
T ss_pred HHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHh--CCCCEEEEEeccCC-HHHHHHHHhccCCCEEEEccC
Confidence 34455666677799887553 222 34556666 57898777543222 112344443357999988654
No 301
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=34.01 E-value=1.2e+02 Score=31.79 Aligned_cols=90 Identities=17% Similarity=0.216 Sum_probs=51.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC-CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcE
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFY-NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPT 91 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~-~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPV 91 (559)
+..|+|||.|+...+.++ ..|+.|+... +-.+.|..+.- ...|+||+-+.-.. .-..++..++ ++.|
T Consensus 27 g~~vvvId~d~~~v~~~~----~~g~~vi~GDat~~~~L~~agi--~~A~~viv~~~~~~--~n~~i~~~ar~~~p~~~I 98 (413)
T 3l9w_A 27 GVKMVVLDHDPDHIETLR----KFGMKVFYGDATRMDLLESAGA--AKAEVLINAIDDPQ--TNLQLTEMVKEHFPHLQI 98 (413)
T ss_dssp TCCEEEEECCHHHHHHHH----HTTCCCEESCTTCHHHHHHTTT--TTCSEEEECCSSHH--HHHHHHHHHHHHCTTCEE
T ss_pred CCCEEEEECCHHHHHHHH----hCCCeEEEcCCCCHHHHHhcCC--CccCEEEECCCChH--HHHHHHHHHHHhCCCCeE
Confidence 567888888877655443 3466554322 22344544433 45788888663222 1233333333 5677
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEe
Q 008619 92 IITSNIHCLSTMMKCIALGAVEFLR 116 (559)
Q Consensus 92 ImLSa~~d~e~v~kAi~~GA~DYLv 116 (559)
|+-+. +.+......++||+..+.
T Consensus 99 iara~--~~~~~~~L~~~Gad~Vi~ 121 (413)
T 3l9w_A 99 IARAR--DVDHYIRLRQAGVEKPER 121 (413)
T ss_dssp EEEES--SHHHHHHHHHTTCSSCEE
T ss_pred EEEEC--CHHHHHHHHHCCCCEEEC
Confidence 76655 345666778899997664
No 302
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=33.94 E-value=1.4e+02 Score=29.06 Aligned_cols=74 Identities=18% Similarity=0.256 Sum_probs=44.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHhh-CCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC--CCcEEEE
Q 008619 18 LRVLLLDQDSSAAAELKFKLEA-MDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIIT 94 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~-~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir--diPVImL 94 (559)
|||.|+.-.=.+-+.+.+.+.. .+++++.+.+..+-++.+.. ..+| |++|+.-|+ ...+.++.+. .+++|+-
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~dl~~~~~--~~~D-vvIDfT~p~--a~~~~~~~a~~~g~~~Vig 75 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPLSLLTD--GNTE-VVIDFTHPD--VVMGNLEFLIDNGIHAVVG 75 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCCTHHHHH--TTCC-EEEECSCTT--THHHHHHHHHHTTCEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCCHHHHhc--cCCc-EEEEccChH--HHHHHHHHHHHcCCCEEEc
Confidence 4788888644455555555654 48998844322111222222 2478 788999887 4566665542 7888875
Q ss_pred ec
Q 008619 95 SN 96 (559)
Q Consensus 95 Sa 96 (559)
|.
T Consensus 76 TT 77 (245)
T 1p9l_A 76 TT 77 (245)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 303
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}
Probab=33.84 E-value=90 Score=31.13 Aligned_cols=131 Identities=10% Similarity=0.056 Sum_probs=74.3
Q ss_pred CCCCCcEEEEEeCCHHHH-HHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcE
Q 008619 13 DFPKGLRVLLLDQDSSAA-AELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPT 91 (559)
Q Consensus 13 ~~p~glrVLIVDDD~~~~-~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPV 91 (559)
++|+.+||.||.--..-. ..+..+...-+++++.+.+... ..+.+-.. .+--++++...++-+
T Consensus 21 ~~M~~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~---------~~~g~~~~-------~~~~~ll~~~~~vD~ 84 (330)
T 4ew6_A 21 QSMSPINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHG---------TVEGVNSY-------TTIEAMLDAEPSIDA 84 (330)
T ss_dssp CCCCCEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSC---------CCTTSEEE-------SSHHHHHHHCTTCCE
T ss_pred ccCCCceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCCh---------hhcCCCcc-------CCHHHHHhCCCCCCE
Confidence 455679999999887665 3444444444788775444221 11211111 234456665334555
Q ss_pred EEEecC--CCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHHHHHHhcCCCCccCCCcHHHHHHHHHHhh
Q 008619 92 IITSNI--HCLSTMMKCIALGAVEFLRKPL--SEDKLRNLWQHVVHKAFNAGGSALSDSLKPVKESVVSMLHL 160 (559)
Q Consensus 92 ImLSa~--~d~e~v~kAi~~GA~DYLvKPi--s~eeL~~iIq~vlrr~~~~~~~~~s~~Lt~re~eVl~li~~ 160 (559)
|++... .-.+.+.+|+++|..=|+-||+ +.++....++.+-+.... .......++.+.-..+.+++..
T Consensus 85 V~i~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~-~~v~~~~r~~p~~~~~k~~i~~ 156 (330)
T 4ew6_A 85 VSLCMPPQYRYEAAYKALVAGKHVFLEKPPGATLSEVADLEALANKQGAS-LFASWHSRYAPAVEAAKAFLAS 156 (330)
T ss_dssp EEECSCHHHHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCC-EEECCGGGGSTTHHHHHHHHHS
T ss_pred EEEeCCcHHHHHHHHHHHHcCCcEEEeCCCCCCHHHHHHHHHHHHhcCCe-EEEEehhhccHHHHHHHHHHhc
Confidence 555443 3456789999999999999997 677777766554433211 0111123444555566666554
No 304
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=33.75 E-value=3.2e+02 Score=27.07 Aligned_cols=93 Identities=10% Similarity=0.116 Sum_probs=57.3
Q ss_pred HHHHHhhCCC-EEE--EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHc---C--CCcEEEEecCCCHHHHH
Q 008619 33 LKFKLEAMDY-IVS--TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA---K--DLPTIITSNIHCLSTMM 104 (559)
Q Consensus 33 L~~~L~~~gy-~V~--ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~I---r--diPVImLSa~~d~e~v~ 104 (559)
|++.|+. |. .+. .-.+..+.++.+.. ..+|.|++|+.-.. .+--.+...+ . ..++++=+...+...+.
T Consensus 30 ~k~~l~~-G~~~~gl~~~~~~p~~~e~a~~--~GaD~v~lDlEh~~-~~~~~~~~~l~a~~~~~~~~~VRv~~~d~~di~ 105 (287)
T 2v5j_A 30 FKAALKA-GRPQIGLWLGLSSSYSAELLAG--AGFDWLLIDGEHAP-NNVQTVLTQLQAIAPYPSQPVVRPSWNDPVQIK 105 (287)
T ss_dssp HHHHHHT-TCCEEEEEECSCCHHHHHHHHT--SCCSEEEEESSSSS-CCHHHHHHHHHHHTTSSSEEEEECSSSCHHHHH
T ss_pred HHHHHHC-CCcEEEEEEECCCHHHHHHHHh--CCCCEEEEeCCCcc-chHHHHHHHHHHHHhcCCCEEEEECCCCHHHHH
Confidence 5555554 43 333 22344455566666 57999999996544 4433333333 2 46666666677788899
Q ss_pred HHHHcCCCEEEe-CCCCHHHHHHHHH
Q 008619 105 KCIALGAVEFLR-KPLSEDKLRNLWQ 129 (559)
Q Consensus 105 kAi~~GA~DYLv-KPis~eeL~~iIq 129 (559)
.++..|++..++ |--+.+++..+++
T Consensus 106 ~~ld~ga~~ImlP~V~saeea~~~~~ 131 (287)
T 2v5j_A 106 QLLDVGTQTLLVPMVQNADEAREAVR 131 (287)
T ss_dssp HHHHTTCCEEEESCCCSHHHHHHHHH
T ss_pred HHHhCCCCEEEeCCCCCHHHHHHHHH
Confidence 999999987655 3336778666544
No 305
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=33.56 E-value=1.1e+02 Score=30.56 Aligned_cols=92 Identities=11% Similarity=0.033 Sum_probs=60.7
Q ss_pred EEEEEeCCHHHHHH----HHHHHhhCCC---EEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CCc
Q 008619 19 RVLLLDQDSSAAAE----LKFKLEAMDY---IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLP 90 (559)
Q Consensus 19 rVLIVDDD~~~~~~----L~~~L~~~gy---~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-diP 90 (559)
-+||.||+...... ++..-+..+. ..+.+.+.+++.+.+.. ..|+|++|-.-+. .--+..+.++ ++|
T Consensus 168 ~~LIkdnHi~~aggi~~av~~ar~~~~~~~~IgVev~t~eea~eA~~a---GaD~I~ld~~~~~--~~k~av~~v~~~ip 242 (286)
T 1x1o_A 168 GILLKENHVRAAGGVGEAVRRAKARAPHYLKVEVEVRSLEELEEALEA---GADLILLDNFPLE--ALREAVRRVGGRVP 242 (286)
T ss_dssp CEEECHHHHHHHTSHHHHHHHHHHHSCTTSCEEEEESSHHHHHHHHHH---TCSEEEEESCCHH--HHHHHHHHHTTSSC
T ss_pred ceEEECCHHHHhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHc---CCCEEEECCCCHH--HHHHHHHHhCCCCe
Confidence 36888887765432 3332233332 23378899999888866 4799999985444 2223445554 577
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEe
Q 008619 91 TIITSNIHCLSTMMKCIALGAVEFLR 116 (559)
Q Consensus 91 VImLSa~~d~e~v~kAi~~GA~DYLv 116 (559)
++ .|+.-+.+.+.+....|++.+-+
T Consensus 243 i~-AsGGIt~eni~~~a~tGvD~IsV 267 (286)
T 1x1o_A 243 LE-ASGNMTLERAKAAAEAGVDYVSV 267 (286)
T ss_dssp EE-EESSCCHHHHHHHHHHTCSEEEC
T ss_pred EE-EEcCCCHHHHHHHHHcCCCEEEE
Confidence 65 46777889999999999987654
No 306
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}
Probab=33.23 E-value=1.1e+02 Score=30.22 Aligned_cols=132 Identities=9% Similarity=0.069 Sum_probs=71.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECC-HHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEEEE
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYN-ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIIT 94 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~-ta~~-~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVImL 94 (559)
++||.||.--..-...+..+....+++++ .|.. .+.+-+.... ....-+. .+--++++. .++-+|++
T Consensus 2 ~~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~--~~~~~~~--------~~~~~ll~~-~~~D~V~i 70 (344)
T 3ezy_A 2 SLRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEK--LGVEKAY--------KDPHELIED-PNVDAVLV 70 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHH--HTCSEEE--------SSHHHHHHC-TTCCEEEE
T ss_pred eeEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHH--hCCCcee--------CCHHHHhcC-CCCCEEEE
Confidence 47899999876655544444444478877 4443 3333333333 1111111 123344442 24445555
Q ss_pred ecC--CCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHHHHHHhcCCCCccCCCcHHHHHHHHHHhh
Q 008619 95 SNI--HCLSTMMKCIALGAVEFLRKPL--SEDKLRNLWQHVVHKAFNAGGSALSDSLKPVKESVVSMLHL 160 (559)
Q Consensus 95 Sa~--~d~e~v~kAi~~GA~DYLvKPi--s~eeL~~iIq~vlrr~~~~~~~~~s~~Lt~re~eVl~li~~ 160 (559)
+.. .-.+.+..++++|..=|+-||+ +.++....++.+-+... ........++.+.-..+.+++..
T Consensus 71 ~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~e~~~l~~~a~~~g~-~~~v~~~~R~~p~~~~~k~~i~~ 139 (344)
T 3ezy_A 71 CSSTNTHSELVIACAKAKKHVFCEKPLSLNLADVDRMIEETKKADV-ILFTGFNRRFDRNFKKLKEAVEN 139 (344)
T ss_dssp CSCGGGHHHHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHHTC-CEEEECGGGGCHHHHHHHHHHHT
T ss_pred cCCCcchHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhCC-cEEEeecccCCHHHHHHHHHHHc
Confidence 443 3456788999999999999994 66777766554433211 11111133455666666666554
No 307
>3s83_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, signaling protein; HET: MSE; 1.34A {Caulobacter crescentus} PDB: 3u2e_A
Probab=33.18 E-value=77 Score=30.05 Aligned_cols=97 Identities=19% Similarity=0.175 Sum_probs=62.6
Q ss_pred HHHHHHHHhhCCCEEE--EECCHHHHHHHhhcCCCCeeEEEEecCCC----CCCCHHHHHHHcC------CCcEEEEecC
Q 008619 30 AAELKFKLEAMDYIVS--TFYNENEALSAFSDKPENFHVAIVEVTTS----NTDGSFKFLETAK------DLPTIITSNI 97 (559)
Q Consensus 30 ~~~L~~~L~~~gy~V~--ta~~~~eAL~~Lre~~~~pDLVIvDv~MP----d~mdG~eLLe~Ir------diPVImLSa~ 97 (559)
.......|+..||.+. -+.++...+..|.. -.+|.|=+|-.+- .......+++.+. ++.|| ..+-
T Consensus 141 ~~~~l~~l~~~G~~ialDdfG~g~ssl~~L~~--l~~d~iKiD~~~v~~~~~~~~~~~~~~~i~~~a~~~g~~vi-aeGV 217 (259)
T 3s83_A 141 AAVILKTLRDAGAGLALDDFGTGFSSLSYLTR--LPFDTLKIDRYFVRTMGNNAGSAKIVRSVVKLGQDLDLEVV-AEGV 217 (259)
T ss_dssp HHHHHHHHHHHTCEEEEECC---CHHHHHHHH--SCCCEEEECHHHHHHTTTCHHHHHHHHHHHHHHHHTTCEEE-ECCC
T ss_pred HHHHHHHHHHCCCEEEEECCCCCchhHHHHHh--CCCCEEEECHHHHhhhhcCchHHHHHHHHHHHHHHCCCeEE-EEeC
Confidence 3344556677798877 46677788888988 7899999996432 2011233444431 56554 5566
Q ss_pred CCHHHHHHHHHcCCC---EE-EeCCCCHHHHHHHHH
Q 008619 98 HCLSTMMKCIALGAV---EF-LRKPLSEDKLRNLWQ 129 (559)
Q Consensus 98 ~d~e~v~kAi~~GA~---DY-LvKPis~eeL~~iIq 129 (559)
++.+....+.+.|++ +| +.||+..+++...+.
T Consensus 218 Et~~~~~~l~~lG~~~~QG~~~~~p~~~~~~~~~l~ 253 (259)
T 3s83_A 218 ENAEMAHALQSLGCDYGQGFGYAPALSPQEAEVYLN 253 (259)
T ss_dssp CSHHHHHHHHHHTCCEECBTTTBCCBCHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCEeecCcccCCCCHHHHHHHHH
Confidence 677778888888975 33 669999999877544
No 308
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=32.82 E-value=2e+02 Score=26.99 Aligned_cols=74 Identities=8% Similarity=0.201 Sum_probs=51.7
Q ss_pred CHHHHHHHhhcCCCCee-EEEEecC----CCCCCCHHHHHHHcC---CCcEEEEecCCCHHHHHHHHHc-----C-CCEE
Q 008619 49 NENEALSAFSDKPENFH-VAIVEVT----TSNTDGSFKFLETAK---DLPTIITSNIHCLSTMMKCIAL-----G-AVEF 114 (559)
Q Consensus 49 ~~~eAL~~Lre~~~~pD-LVIvDv~----MPd~mdG~eLLe~Ir---diPVImLSa~~d~e~v~kAi~~-----G-A~DY 114 (559)
+..+....+.+ ..++ +++.+.. +.+ -.+++++.++ ++|||....-.+.+.+.++++. | |+++
T Consensus 145 ~~~e~~~~~~~--~G~~~i~~t~~~~~g~~~g--~~~~~i~~l~~~~~iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv 220 (241)
T 1qo2_A 145 DPVSLLKRLKE--YGLEEIVHTEIEKDGTLQE--HDFSLTKKIAIEAEVKVLAAGGISSENSLKTAQKVHTETNGLLKGV 220 (241)
T ss_dssp CHHHHHHHHHT--TTCCEEEEEETTHHHHTCC--CCHHHHHHHHHHHTCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEE
T ss_pred CHHHHHHHHHh--CCCCEEEEEeecccccCCc--CCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHhcccccCCeEeEE
Confidence 55666666666 4567 5555543 122 2377777775 7999999888888999999988 9 9988
Q ss_pred EeC------CCCHHHHHH
Q 008619 115 LRK------PLSEDKLRN 126 (559)
Q Consensus 115 LvK------Pis~eeL~~ 126 (559)
++= +++.++++.
T Consensus 221 ~vgsal~~~~~~~~~~~~ 238 (241)
T 1qo2_A 221 IVGRAFLEGILTVEVMKR 238 (241)
T ss_dssp EECHHHHTTSSCHHHHHH
T ss_pred EeeHHHHcCCCCHHHHHH
Confidence 763 666666554
No 309
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=32.81 E-value=1.7e+02 Score=24.66 Aligned_cols=79 Identities=13% Similarity=0.104 Sum_probs=46.3
Q ss_pred CcEEEEEeCC-HHHHH----HHHHHHhhCCCE-E-EEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCC
Q 008619 17 GLRVLLLDQD-SSAAA----ELKFKLEAMDYI-V-STFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDL 89 (559)
Q Consensus 17 glrVLIVDDD-~~~~~----~L~~~L~~~gy~-V-~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Irdi 89 (559)
+.+||+|=+. -.... .|++.+...|+. + +.+.+..++-..+. .+|+||+-..+.. . ++ .....
T Consensus 18 ~~kIlvvC~sG~gTS~m~~~kl~~~~~~~gi~~~~i~~~~~~~~~~~~~----~~DlIi~t~~l~~-~--~~---~~~~~ 87 (110)
T 3czc_A 18 MVKVLTACGNGMGSSMVIKMKVENALRQLGVSDIESASCSVGEAKGLAS----NYDIVVASNHLIH-E--LD---GRTNG 87 (110)
T ss_dssp CEEEEEECCCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECHHHHHHHGG----GCSEEEEETTTGG-G--TT---TSCSS
T ss_pred CcEEEEECCCcHHHHHHHHHHHHHHHHHcCCCeEEEEEeeHHHHhhccC----CCcEEEECCchHH-H--hC---cCCCc
Confidence 3678776433 22333 455667677775 4 45566666655543 4899999888766 2 11 11246
Q ss_pred cEEEEecCCCHHHHHH
Q 008619 90 PTIITSNIHCLSTMMK 105 (559)
Q Consensus 90 PVImLSa~~d~e~v~k 105 (559)
+++.+...-+.+.+.+
T Consensus 88 ~vi~i~~~l~~~ei~~ 103 (110)
T 3czc_A 88 KLIGLDNLMDDNEIKT 103 (110)
T ss_dssp EEEEESSTTCHHHHHH
T ss_pred eEEEeeccCCHHHHHH
Confidence 7887777655554433
No 310
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=32.71 E-value=3.5e+02 Score=26.25 Aligned_cols=93 Identities=8% Similarity=0.035 Sum_probs=56.7
Q ss_pred HHHHHhhCCC---EEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHc---C--CCcEEEEecCCCHHHHH
Q 008619 33 LKFKLEAMDY---IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA---K--DLPTIITSNIHCLSTMM 104 (559)
Q Consensus 33 L~~~L~~~gy---~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~I---r--diPVImLSa~~d~e~v~ 104 (559)
|++.|.. |. .+.......+.++.+.. ..+|.|++|..-.- .+--++...+ . ..++++=+...+...+.
T Consensus 9 ~k~~l~~-g~~~~g~~~~~~~p~~~e~a~~--~GaD~v~lDlE~~~-~~~~~~~~~~~a~~~~~~~~~VRv~~~~~~~i~ 84 (267)
T 2vws_A 9 FKERLRK-GEVQIGLWLSSTTAYMAEIAAT--SGYDWLLIDGEHAP-NTIQDLYHQLQAVAPYASQPVIRPVEGSKPLIK 84 (267)
T ss_dssp HHHHHHT-TCCEEEEEECSCCHHHHHHHHT--TCCSEEEEETTTSC-CCHHHHHHHHHHHTTSSSEEEEECSSCCHHHHH
T ss_pred HHHHHHC-CCCEEEEEEeCCCHHHHHHHHh--CCCCEEEEcCCCCC-CCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHH
Confidence 5555553 32 33333344555566666 57999999996544 3443333333 2 45566555666788889
Q ss_pred HHHHcCCCEEEe-CCCCHHHHHHHHH
Q 008619 105 KCIALGAVEFLR-KPLSEDKLRNLWQ 129 (559)
Q Consensus 105 kAi~~GA~DYLv-KPis~eeL~~iIq 129 (559)
.++..|++..++ |--+.+++..+++
T Consensus 85 ~~l~~g~~~I~~P~V~s~ee~~~~~~ 110 (267)
T 2vws_A 85 QVLDIGAQTLLIPMVDTAEQARQVVS 110 (267)
T ss_dssp HHHHTTCCEEEECCCCSHHHHHHHHH
T ss_pred HHHHhCCCEEEeCCCCCHHHHHHHHH
Confidence 999999987554 3336778666544
No 311
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=32.59 E-value=1.3e+02 Score=28.08 Aligned_cols=65 Identities=11% Similarity=0.173 Sum_probs=38.2
Q ss_pred HHHHHHHHHhhCCCEEEEEC---CHH---HHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHc--CCCcEEEEecC
Q 008619 29 AAAELKFKLEAMDYIVSTFY---NEN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA--KDLPTIITSNI 97 (559)
Q Consensus 29 ~~~~L~~~L~~~gy~V~ta~---~~~---eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~I--rdiPVImLSa~ 97 (559)
+...++..++..||.+..+. +.+ +.++.+.. ..+|-||+.....+ ...+.++.+ ..+|||++-..
T Consensus 19 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgiIi~~~~~~--~~~~~~~~~~~~~iPvV~i~~~ 91 (271)
T 2dri_A 19 LKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTV--RGTKILLINPTDSD--AVGNAVKMANQANIPVITLDRQ 91 (271)
T ss_dssp HHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHTT--TTEEEEEECCSSTT--TTHHHHHHHHHTTCCEEEESSC
T ss_pred HHHHHHHHHHHcCcEEEEeCCCCCHHHHHHHHHHHHH--cCCCEEEEeCCChH--HHHHHHHHHHHCCCcEEEecCC
Confidence 34455666777799988553 222 34555555 67998887432222 112445554 37999988653
No 312
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=32.53 E-value=1.5e+02 Score=29.46 Aligned_cols=135 Identities=10% Similarity=0.006 Sum_probs=71.5
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhh--CCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcE
Q 008619 15 PKGLRVLLLDQDSSAAAELKFKLEA--MDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPT 91 (559)
Q Consensus 15 p~glrVLIVDDD~~~~~~L~~~L~~--~gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPV 91 (559)
.+.+||.||.--..........|.. .+++++ .|....+..+.+.+. ....-+. .+--++++. .++-+
T Consensus 16 ~~~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~-~~~~~~~--------~~~~~ll~~-~~vD~ 85 (340)
T 1zh8_A 16 LRKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKM-VGNPAVF--------DSYEELLES-GLVDA 85 (340)
T ss_dssp CCCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHH-HSSCEEE--------SCHHHHHHS-SCCSE
T ss_pred CCceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHH-hCCCccc--------CCHHHHhcC-CCCCE
Confidence 3468999999874333333344444 367876 444333333333330 1110111 233344442 24555
Q ss_pred EEEec--CCCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHHHHHHhcCCCCccCCCcHHHHHHHHHHhh
Q 008619 92 IITSN--IHCLSTMMKCIALGAVEFLRKPL--SEDKLRNLWQHVVHKAFNAGGSALSDSLKPVKESVVSMLHL 160 (559)
Q Consensus 92 ImLSa--~~d~e~v~kAi~~GA~DYLvKPi--s~eeL~~iIq~vlrr~~~~~~~~~s~~Lt~re~eVl~li~~ 160 (559)
|+++. ..-.+.+.+|+++|..=|+-||+ +.++....++.+-+.... .......++.+.-..+.++++.
T Consensus 86 V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~-~~v~~~~R~~p~~~~~k~~i~~ 157 (340)
T 1zh8_A 86 VDLTLPVELNLPFIEKALRKGVHVICEKPISTDVETGKKVVELSEKSEKT-VYIAENFRHVPAFWKAKELVES 157 (340)
T ss_dssp EEECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHCSSC-EEEECGGGGCHHHHHHHHHHHT
T ss_pred EEEeCCchHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCe-EEEEecccCCHHHHHHHHHHhc
Confidence 55544 34457889999999999999997 777777765544321100 0011123455555556655543
No 313
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=32.52 E-value=1.5e+02 Score=28.52 Aligned_cols=31 Identities=13% Similarity=0.155 Sum_probs=20.4
Q ss_pred cEEEEEeCCH----HHHHHHHHHHhhCCCEEEEEC
Q 008619 18 LRVLLLDQDS----SAAAELKFKLEAMDYIVSTFY 48 (559)
Q Consensus 18 lrVLIVDDD~----~~~~~L~~~L~~~gy~V~ta~ 48 (559)
||||++-... .....|...|.+.|++|+.++
T Consensus 7 mkIl~~~~~~gG~~~~~~~la~~L~~~G~~V~v~~ 41 (364)
T 1f0k_A 7 KRLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLG 41 (364)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred cEEEEEeCCCccchhHHHHHHHHHHHcCCEEEEEe
Confidence 7899886543 112356777777899988554
No 314
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=32.37 E-value=86 Score=29.37 Aligned_cols=65 Identities=9% Similarity=0.127 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhhCCCEEEEECCH------HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHc--CCCcEEEEecCC
Q 008619 28 SAAAELKFKLEAMDYIVSTFYNE------NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA--KDLPTIITSNIH 98 (559)
Q Consensus 28 ~~~~~L~~~L~~~gy~V~ta~~~------~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~I--rdiPVImLSa~~ 98 (559)
.+...+.+.+++.||.+..+... .+.++.+.. ..+|-||+--.... + +.++.+ ..+|||++....
T Consensus 30 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~vdgiIi~~~~~~--~--~~~~~l~~~~iPvV~~~~~~ 102 (292)
T 3k4h_A 30 EVIRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQG--RQIGGIILLYSREN--D--RIIQYLHEQNFPFVLIGKPY 102 (292)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHT--TCCCEEEESCCBTT--C--HHHHHHHHTTCCEEEESCCS
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHc--CCCCEEEEeCCCCC--h--HHHHHHHHCCCCEEEECCCC
Confidence 34455667777889998865432 234556666 67998887332222 1 345554 389999886643
No 315
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=32.29 E-value=44 Score=30.89 Aligned_cols=73 Identities=12% Similarity=0.227 Sum_probs=49.6
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCe-eEEEEecCCCCCCCHHHHHHHcCCCcEEE
Q 008619 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENF-HVAIVEVTTSNTDGSFKFLETAKDLPTII 93 (559)
Q Consensus 15 p~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~p-DLVIvDv~MPd~mdG~eLLe~IrdiPVIm 93 (559)
.++++|||..-.--+-..|...|.+.|++|+.+....+.+..+.. ..+ .++..|+. .. +.+.+..+-+|+
T Consensus 19 l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~--~~~~~~~~~Dl~-~~------~~~~~~~~D~vi 89 (236)
T 3e8x_A 19 FQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRE--RGASDIVVANLE-ED------FSHAFASIDAVV 89 (236)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH--TTCSEEEECCTT-SC------CGGGGTTCSEEE
T ss_pred cCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHh--CCCceEEEcccH-HH------HHHHHcCCCEEE
Confidence 356899999998888888888888889999965544445555555 457 78888887 22 122334566666
Q ss_pred Eec
Q 008619 94 TSN 96 (559)
Q Consensus 94 LSa 96 (559)
..+
T Consensus 90 ~~a 92 (236)
T 3e8x_A 90 FAA 92 (236)
T ss_dssp ECC
T ss_pred ECC
Confidence 554
No 316
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A
Probab=32.20 E-value=2.3e+02 Score=30.24 Aligned_cols=85 Identities=15% Similarity=0.080 Sum_probs=59.9
Q ss_pred HHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCC--CC---HHHHHHHcC-CCcEEEEecCCCHH
Q 008619 29 AAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNT--DG---SFKFLETAK-DLPTIITSNIHCLS 101 (559)
Q Consensus 29 ~~~~L~~~L~~~gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~--md---G~eLLe~Ir-diPVImLSa~~d~e 101 (559)
.+..|....+.+|..+. .+.+.+|+...+.- .+|+|=++.+--.. .| -.+++..+. ++++|.-|+-...+
T Consensus 145 ~l~~l~~~a~~lgm~~LvEvh~~eE~~~A~~l---ga~iIGinnr~L~t~~~dl~~~~~L~~~ip~~~~vIaEsGI~t~e 221 (452)
T 1pii_A 145 QYRQLAAVAHSLEMGVLTEVSNEEEQERAIAL---GAKVVGINNRDLRDLSIDLNRTRELAPKLGHNVTVISESGINTYA 221 (452)
T ss_dssp HHHHHHHHHHHTTCEEEEEECSHHHHHHHHHT---TCSEEEEESEETTTTEECTHHHHHHHHHHCTTSEEEEESCCCCHH
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHC---CCCEEEEeCCCCCCCCCCHHHHHHHHHhCCCCCeEEEECCCCCHH
Confidence 44555555667798866 88999999887766 46777665432110 11 234455554 68888889999999
Q ss_pred HHHHHHHcCCCEEEeC
Q 008619 102 TMMKCIALGAVEFLRK 117 (559)
Q Consensus 102 ~v~kAi~~GA~DYLvK 117 (559)
.+.++.++ |+.+|+-
T Consensus 222 dv~~~~~~-a~avLVG 236 (452)
T 1pii_A 222 QVRELSHF-ANGFLIG 236 (452)
T ss_dssp HHHHHTTT-CSEEEEC
T ss_pred HHHHHHHh-CCEEEEc
Confidence 99999999 9999874
No 317
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=32.11 E-value=1.6e+02 Score=27.48 Aligned_cols=83 Identities=14% Similarity=0.162 Sum_probs=54.8
Q ss_pred HHHHHHHhhC-CCEEE-EECCHHHHHHHhhcCCCCeeEE---EEecCCCC----CCCHHHHHHHcC--CCcEEEEecCCC
Q 008619 31 AELKFKLEAM-DYIVS-TFYNENEALSAFSDKPENFHVA---IVEVTTSN----TDGSFKFLETAK--DLPTIITSNIHC 99 (559)
Q Consensus 31 ~~L~~~L~~~-gy~V~-ta~~~~eAL~~Lre~~~~pDLV---IvDv~MPd----~mdG~eLLe~Ir--diPVImLSa~~d 99 (559)
+.++.+-+.. +..|. .+.+.+++...+.. ..|+| +..+. +. ....+++++.++ ++|||+..+-.+
T Consensus 122 ~~i~~i~~~~~~~~v~~~~~t~~ea~~a~~~---Gad~i~~~v~g~~-~~~~~~~~~~~~~i~~~~~~~ipvia~GGI~s 197 (234)
T 1yxy_A 122 SFIRQVKEKYPNQLLMADISTFDEGLVAHQA---GIDFVGTTLSGYT-PYSRQEAGPDVALIEALCKAGIAVIAEGKIHS 197 (234)
T ss_dssp HHHHHHHHHCTTCEEEEECSSHHHHHHHHHT---TCSEEECTTTTSS-TTSCCSSSCCHHHHHHHHHTTCCEEEESCCCS
T ss_pred HHHHHHHHhCCCCeEEEeCCCHHHHHHHHHc---CCCEEeeeccccC-CCCcCCCCCCHHHHHHHHhCCCCEEEECCCCC
Confidence 3344333333 55555 66788888776655 47887 33332 21 012356676664 799998888888
Q ss_pred HHHHHHHHHcCCCEEEeC
Q 008619 100 LSTMMKCIALGAVEFLRK 117 (559)
Q Consensus 100 ~e~v~kAi~~GA~DYLvK 117 (559)
.+.+.+++++||+.+++=
T Consensus 198 ~~~~~~~~~~Gad~v~vG 215 (234)
T 1yxy_A 198 PEEAKKINDLGVAGIVVG 215 (234)
T ss_dssp HHHHHHHHTTCCSEEEEC
T ss_pred HHHHHHHHHCCCCEEEEc
Confidence 999999999999998864
No 318
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=32.09 E-value=1.4e+02 Score=26.46 Aligned_cols=94 Identities=13% Similarity=0.080 Sum_probs=57.9
Q ss_pred EEEEEe--CCHHHHHHHHHHHhhCCCEEEEEC-CHHHHHHHhhcCCCCeeEEEEecCCCCCCC--HHHHHHHcC--CCcE
Q 008619 19 RVLLLD--QDSSAAAELKFKLEAMDYIVSTFY-NENEALSAFSDKPENFHVAIVEVTTSNTDG--SFKFLETAK--DLPT 91 (559)
Q Consensus 19 rVLIVD--DD~~~~~~L~~~L~~~gy~V~ta~-~~~eAL~~Lre~~~~pDLVIvDv~MPd~md--G~eLLe~Ir--diPV 91 (559)
+|+++. ........+...|...|..+.... +..+....+..- ..=|++|+ +..++ .. -.++++.++ ..+|
T Consensus 41 ~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~d~~i~-iS~sG-~t~~~~~~~~~ak~~g~~v 117 (187)
T 3sho_A 41 HVIVVGMGFSAAVAVFLGHGLNSLGIRTTVLTEGGSTLTITLANL-RPTDLMIG-VSVWR-YLRDTVAALAGAAERGVPT 117 (187)
T ss_dssp EEEEECCGGGHHHHHHHHHHHHHTTCCEEEECCCTHHHHHHHHTC-CTTEEEEE-ECCSS-CCHHHHHHHHHHHHTTCCE
T ss_pred EEEEEecCchHHHHHHHHHHHHhcCCCEEEecCCchhHHHHHhcC-CCCCEEEE-EeCCC-CCHHHHHHHHHHHHCCCCE
Confidence 677764 455566778888888999988877 555555444431 22366555 55555 22 345555554 7999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCC
Q 008619 92 IITSNIHCLSTMMKCIALGAVEFLRKPLS 120 (559)
Q Consensus 92 ImLSa~~d~e~v~kAi~~GA~DYLvKPis 120 (559)
|.+|...+.... ..|+-.|.-|..
T Consensus 118 i~IT~~~~s~l~-----~~ad~~l~~~~~ 141 (187)
T 3sho_A 118 MALTDSSVSPPA-----RIADHVLVAATR 141 (187)
T ss_dssp EEEESCTTSHHH-----HHCSEEEECCCC
T ss_pred EEEeCCCCCcch-----hhCcEEEEecCC
Confidence 999997664432 235555655443
No 319
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=32.01 E-value=1.4e+02 Score=27.80 Aligned_cols=69 Identities=14% Similarity=0.148 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhhCCCEEEEECC---HH---HHHHHhhcCCCCeeEEEEecCCCCCC-CHHHHHHHcC--CCcEEEEecCC
Q 008619 28 SAAAELKFKLEAMDYIVSTFYN---EN---EALSAFSDKPENFHVAIVEVTTSNTD-GSFKFLETAK--DLPTIITSNIH 98 (559)
Q Consensus 28 ~~~~~L~~~L~~~gy~V~ta~~---~~---eAL~~Lre~~~~pDLVIvDv~MPd~m-dG~eLLe~Ir--diPVImLSa~~ 98 (559)
.+...+++.+++.||.+..+.. .+ +.++.+.. ..+|-||+--...... ...++++.+. .+|||++....
T Consensus 32 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~ 109 (298)
T 3tb6_A 32 SIIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLS--QHIDGLIVEPTKSALQTPNIGYYLNLEKNGIPFAMINASY 109 (298)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH--TCCSEEEECCSSTTSCCTTHHHHHHHHHTTCCEEEESSCC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHH--CCCCEEEEecccccccCCcHHHHHHHHhcCCCEEEEecCc
Confidence 3456677777888999886542 22 35555666 6789888744322101 2345666654 89999887643
No 320
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=31.99 E-value=1.5e+02 Score=27.60 Aligned_cols=63 Identities=16% Similarity=0.178 Sum_probs=40.5
Q ss_pred HHHHHHHHHhhCCCEEEEECCH------HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC--CCcEEEEecCC
Q 008619 29 AAAELKFKLEAMDYIVSTFYNE------NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNIH 98 (559)
Q Consensus 29 ~~~~L~~~L~~~gy~V~ta~~~------~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir--diPVImLSa~~ 98 (559)
+...+.+.+++.||.+..+... .+.++.+.. ..+|-||+--. .. .+.++.+. .+|||++....
T Consensus 25 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~----~~-~~~~~~l~~~~iPvV~i~~~~ 95 (276)
T 3jy6_A 25 LFKGISSILESRGYIGVLFDANADIEREKTLLRAIGS--RGFDGLILQSF----SN-PQTVQEILHQQMPVVSVDREM 95 (276)
T ss_dssp HHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHT--TTCSEEEEESS----CC-HHHHHHHHTTSSCEEEESCCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHh--CCCCEEEEecC----Cc-HHHHHHHHHCCCCEEEEeccc
Confidence 3445566667789998855432 245666666 67998887542 22 55666664 79999886543
No 321
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=31.94 E-value=97 Score=31.63 Aligned_cols=54 Identities=17% Similarity=0.217 Sum_probs=42.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCC---EEE-EECCHHHHHHHhhcCCCCeeEEEEec
Q 008619 18 LRVLLLDQDSSAAAELKFKLEAMDY---IVS-TFYNENEALSAFSDKPENFHVAIVEV 71 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy---~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv 71 (559)
-+|+-||-++...+..+.-+...|+ .+. .+.+..+.+..+......||+||+|.
T Consensus 244 ~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~dp 301 (396)
T 3c0k_A 244 SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDP 301 (396)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEEECC
Confidence 4899999999999999998887776 454 67788887765543225799999995
No 322
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=31.79 E-value=92 Score=28.82 Aligned_cols=50 Identities=8% Similarity=0.004 Sum_probs=38.6
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEe
Q 008619 19 RVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVE 70 (559)
Q Consensus 19 rVLIVDDD~~~~~~L~~~L~~~gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvD 70 (559)
+|..||-++...+..++.+...+..+. ...+..+.+.-+.. ..||+|++|
T Consensus 85 ~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~--~~fD~V~~d 135 (236)
T 1zx0_A 85 EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPD--GHFDGILYD 135 (236)
T ss_dssp EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCT--TCEEEEEEC
T ss_pred eEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCC--CceEEEEEC
Confidence 789999999999999998887777666 56677665433444 679999995
No 323
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=31.56 E-value=82 Score=33.07 Aligned_cols=57 Identities=12% Similarity=0.131 Sum_probs=41.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhC------CCE---EE-EECCHHHHHHHhhcCCCCeeEEEEecCCC
Q 008619 18 LRVLLLDQDSSAAAELKFKLEAM------DYI---VS-TFYNENEALSAFSDKPENFHVAIVEVTTS 74 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~------gy~---V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MP 74 (559)
-+|-+||=|+.+.+..++.|... ..+ |. ...|+.+.++...+....||+||+|+.-+
T Consensus 229 ~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~yDvIIvDl~D~ 295 (381)
T 3c6k_A 229 KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAV 295 (381)
T ss_dssp SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCSS
T ss_pred ceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCceeEEEECCCCC
Confidence 47888999999999888887431 122 33 67899988876644335799999998653
No 324
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=31.43 E-value=1.5e+02 Score=28.22 Aligned_cols=64 Identities=11% Similarity=0.099 Sum_probs=39.3
Q ss_pred HHHHHHHHHhhCCCEEEEECCH------HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHc--CCCcEEEEecCC
Q 008619 29 AAAELKFKLEAMDYIVSTFYNE------NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA--KDLPTIITSNIH 98 (559)
Q Consensus 29 ~~~~L~~~L~~~gy~V~ta~~~------~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~I--rdiPVImLSa~~ 98 (559)
+...++..+...||.+..+... .+.++.+.. ..+|-||+--...+ . +.++.+ ..+|||++....
T Consensus 45 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~~-~---~~~~~l~~~~iPvV~i~~~~ 116 (305)
T 3huu_A 45 VLNGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQS--KSVDGFILLYSLKD-D---PIEHLLNEFKVPYLIVGKSL 116 (305)
T ss_dssp HHHHHHHHHHHHTCEEEECCCSSHHHHHHHHHHHHHT--TCCSEEEESSCBTT-C---HHHHHHHHTTCCEEEESCCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHh--CCCCEEEEeCCcCC-c---HHHHHHHHcCCCEEEECCCC
Confidence 3445566666779998865532 235566666 67898877432222 2 445554 389999887643
No 325
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=31.42 E-value=1.1e+02 Score=27.58 Aligned_cols=59 Identities=14% Similarity=0.151 Sum_probs=43.9
Q ss_pred ccCcCCCCCcEEEEEeCCHHHHHHHHHHHhhCCC--EEEEECCHHHHHHHhhcCCCCeeEEEEec
Q 008619 9 SAWKDFPKGLRVLLLDQDSSAAAELKFKLEAMDY--IVSTFYNENEALSAFSDKPENFHVAIVEV 71 (559)
Q Consensus 9 s~~~~~p~glrVLIVDDD~~~~~~L~~~L~~~gy--~V~ta~~~~eAL~~Lre~~~~pDLVIvDv 71 (559)
..++++ .+.+|.+. ........+..++...|+ .++.+.+..+++..|.. .+.|+++.+.
T Consensus 141 ~~~~dL-~g~~i~~~-~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~--g~vDa~~~~~ 201 (259)
T 2v25_A 141 KSLADM-KGANIGVA-QAATTKKAIGEAAKKIGIDVKFSEFPDYPSIKAALDA--KRVDAFSVDK 201 (259)
T ss_dssp CSGGGC-TTCEEEEE-TTCSHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHT--TSSSEEEEEH
T ss_pred CCHHHh-CCCEEEEe-cCCchHHHHHHHHHhcCCceeEEEeCCHHHHHHHHHc--CCCcEEEecH
Confidence 334444 35787776 444556677778877665 77789999999999999 8899999875
No 326
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=31.38 E-value=35 Score=31.09 Aligned_cols=71 Identities=14% Similarity=0.119 Sum_probs=42.6
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEE-ecCCCCCCCH--HHHHHHc--CCCcEEEE
Q 008619 20 VLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIV-EVTTSNTDGS--FKFLETA--KDLPTIIT 94 (559)
Q Consensus 20 VLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIv-Dv~MPd~mdG--~eLLe~I--rdiPVImL 94 (559)
|+|||-.......+.+.|++.|+.++.+.... .+..+.. ..+|.||+ .-.-++ ..+ .++++.+ .++||+-+
T Consensus 3 i~iid~~~~~~~~~~~~l~~~G~~~~~~~~~~-~~~~~~~--~~~dglil~Gg~~~~-~~~~~~~~i~~~~~~~~PilGI 78 (189)
T 1wl8_A 3 IVIMDNGGQYVHRIWRTLRYLGVETKIIPNTT-PLEEIKA--MNPKGIIFSGGPSLE-NTGNCEKVLEHYDEFNVPILGI 78 (189)
T ss_dssp EEEEECSCTTHHHHHHHHHHTTCEEEEEETTC-CHHHHHH--TCCSEEEECCCSCTT-CCTTHHHHHHTGGGTCSCEEEE
T ss_pred EEEEECCCchHHHHHHHHHHCCCeEEEEECCC-ChHHhcc--cCCCEEEECCCCChh-hhhhHHHHHHHHhhCCCeEEEE
Confidence 99999777777789999999999887665433 2333333 35776665 221111 112 4455543 25676654
No 327
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=31.14 E-value=65 Score=29.47 Aligned_cols=51 Identities=20% Similarity=0.180 Sum_probs=33.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCH---HHHHHHhhcCCCCeeEEEE
Q 008619 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNE---NEALSAFSDKPENFHVAIV 69 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~---~eAL~~Lre~~~~pDLVIv 69 (559)
++|+|||.-..+...+.+.|++.|+.++.+... ++..+.+... ..+++||+
T Consensus 1 ~~i~iiDn~~s~~~~i~~~l~~~G~~~~v~~~~~~~~~i~~~l~~~-~~~~iil~ 54 (192)
T 1i1q_B 1 ADILLLDNIDSFTWNLADQLRTNGHNVVIYRNHIPAQTLIDRLATM-KNPVLMLS 54 (192)
T ss_dssp CEEEEEECSCSSHHHHHHHHHHTTCEEEEEETTSCSHHHHHHHTTC-SSEEEEEC
T ss_pred CcEEEEECCccHHHHHHHHHHHCCCeEEEEECCCCHHHHHHHhhhc-cCCeEEEC
Confidence 479999966567788899999999988766544 4444444331 23456665
No 328
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=31.11 E-value=1.1e+02 Score=30.81 Aligned_cols=93 Identities=11% Similarity=0.014 Sum_probs=59.2
Q ss_pred EEEEEeCCHHHHH----HHHHHHhhCC--CEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCC---C
Q 008619 19 RVLLLDQDSSAAA----ELKFKLEAMD--YIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKD---L 89 (559)
Q Consensus 19 rVLIVDDD~~~~~----~L~~~L~~~g--y~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ird---i 89 (559)
-+||-|++..... .++..-+..+ -..+.+.+.+++.+.+.. ..|+|++|-.-|+ +-.+..+.++. -
T Consensus 167 ~vlikdnHi~~ag~i~~av~~ar~~~~~~~I~Vev~t~eea~eal~a---GaD~I~LDn~~~~--~~~~~v~~l~~~~~~ 241 (284)
T 1qpo_A 167 AALIKDNHVAAAGSVVDALRAVRNAAPDLPCEVEVDSLEQLDAVLPE---KPELILLDNFAVW--QTQTAVQRRDSRAPT 241 (284)
T ss_dssp SEEECHHHHHHHSSHHHHHHHHHHHCTTSCEEEEESSHHHHHHHGGG---CCSEEEEETCCHH--HHHHHHHHHHHHCTT
T ss_pred hhcccHhHHHHcCCHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHc---CCCEEEECCCCHH--HHHHHHHHhhccCCC
Confidence 3666666543322 2333222333 344478899999998886 4799999985443 22334444432 3
Q ss_pred cEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008619 90 PTIITSNIHCLSTMMKCIALGAVEFLR 116 (559)
Q Consensus 90 PVImLSa~~d~e~v~kAi~~GA~DYLv 116 (559)
..|..|+.-+.+.+.+..+.|++.|.+
T Consensus 242 v~ieaSGGIt~~~i~~~a~tGVD~isv 268 (284)
T 1qpo_A 242 VMLESSGGLSLQTAATYAETGVDYLAV 268 (284)
T ss_dssp CEEEEESSCCTTTHHHHHHTTCSEEEC
T ss_pred eEEEEECCCCHHHHHHHHhcCCCEEEE
Confidence 456788888889999999999876653
No 329
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=31.07 E-value=42 Score=32.83 Aligned_cols=61 Identities=13% Similarity=0.235 Sum_probs=41.9
Q ss_pred HHHHHHhhcCCCCeeEEEEecCCCCC-CCHHHHHHHcC--CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCC
Q 008619 51 NEALSAFSDKPENFHVAIVEVTTSNT-DGSFKFLETAK--DLPTIITSNIHCLSTMMKCIALGAVEFLRKPL 119 (559)
Q Consensus 51 ~eAL~~Lre~~~~pDLVIvDv~MPd~-mdG~eLLe~Ir--diPVImLSa~~d~e~v~kAi~~GA~DYLvKPi 119 (559)
.++++.+.+ ...|+|.+.+...-. .+-+++++.+| ++|+|+|+...+ .+..|++++|+--+
T Consensus 23 ~~~~~~l~~--~GaD~IelG~S~g~t~~~~~~~v~~ir~~~~Pivl~~y~~n------~i~~gvDg~iipdL 86 (234)
T 2f6u_A 23 DEIIKAVAD--SGTDAVMISGTQNVTYEKARTLIEKVSQYGLPIVVEPSDPS------NVVYDVDYLFVPTV 86 (234)
T ss_dssp HHHHHHHHT--TTCSEEEECCCTTCCHHHHHHHHHHHTTSCCCEEECCSSCC------CCCCCSSEEEEEEE
T ss_pred HHHHHHHHH--cCCCEEEECCCCCCCHHHHHHHHHHhcCCCCCEEEecCCcc------hhhcCCCEEEEccc
Confidence 445566666 568999998843210 12477788887 799999998832 12789999998633
No 330
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=30.99 E-value=97 Score=30.20 Aligned_cols=56 Identities=13% Similarity=0.149 Sum_probs=40.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCC-----CEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCC
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAMD-----YIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSN 75 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~g-----y~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd 75 (559)
..+|..||-|+...+..++.+...+ -+|. ...++.+.+... . ..||+||+|...+.
T Consensus 102 ~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~-~--~~fD~Ii~d~~~~~ 163 (283)
T 2i7c_A 102 VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV-T--NTYDVIIVDSSDPI 163 (283)
T ss_dssp CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC-C--SCEEEEEEECCCTT
T ss_pred CCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhC-C--CCceEEEEcCCCCC
Confidence 4689999999999999888886431 1233 567777766543 3 57999999986553
No 331
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=30.92 E-value=35 Score=33.55 Aligned_cols=57 Identities=14% Similarity=0.198 Sum_probs=39.0
Q ss_pred HHHHhhcCCCCeeEEEEecCCCCC-CCHHHHHHHcC--CCcEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008619 53 ALSAFSDKPENFHVAIVEVTTSNT-DGSFKFLETAK--DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (559)
Q Consensus 53 AL~~Lre~~~~pDLVIvDv~MPd~-mdG~eLLe~Ir--diPVImLSa~~d~e~v~kAi~~GA~DYLvK 117 (559)
+++.+.+ ...|+|++.....-. .+-+++++.++ ++|||++..+. +.+..||+.||.-
T Consensus 28 ~l~~~~~--~GtDaI~vGgs~gvt~~~~~~~v~~ik~~~~Piil~p~~~------~~~~~gaD~il~p 87 (235)
T 3w01_A 28 DLDAICM--SQTDAIMIGGTDDVTEDNVIHLMSKIRRYPLPLVLEISNI------ESVMPGFDFYFVP 87 (235)
T ss_dssp HHHHHHT--SSCSEEEECCSSCCCHHHHHHHHHHHTTSCSCEEEECCCS------TTCCTTCSEEEEE
T ss_pred HHHHHHH--cCCCEEEECCcCCcCHHHHHHHHHHhcCcCCCEEEecCCH------HHhhcCCCEEEEc
Confidence 3343445 568999998865220 23567778887 79999998864 2346699999875
No 332
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}
Probab=30.89 E-value=1.3e+02 Score=30.54 Aligned_cols=104 Identities=10% Similarity=0.090 Sum_probs=57.9
Q ss_pred CcEEEEEeCCHHHHH-HHHHHHhhCCCEEE-EECC-HHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEEE
Q 008619 17 GLRVLLLDQDSSAAA-ELKFKLEAMDYIVS-TFYN-ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTII 93 (559)
Q Consensus 17 glrVLIVDDD~~~~~-~L~~~L~~~gy~V~-ta~~-~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVIm 93 (559)
.+||.||.--..... .+..+....+++++ .|.. .+.+-+...+ +.+-.. .+--++++. .++-+|+
T Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~----~g~~~~-------~~~~ell~~-~~vD~V~ 69 (387)
T 3moi_A 2 KIRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKE----YGIPVF-------ATLAEMMQH-VQMDAVY 69 (387)
T ss_dssp CEEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHH----HTCCEE-------SSHHHHHHH-SCCSEEE
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHH----cCCCeE-------CCHHHHHcC-CCCCEEE
Confidence 478888888733333 34443333467777 3433 3333333333 111111 233445543 2344444
Q ss_pred Eec--CCCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHH
Q 008619 94 TSN--IHCLSTMMKCIALGAVEFLRKPL--SEDKLRNLWQHVV 132 (559)
Q Consensus 94 LSa--~~d~e~v~kAi~~GA~DYLvKPi--s~eeL~~iIq~vl 132 (559)
++. ..-.+.+..|+++|..=|+-||+ +.++....+..+-
T Consensus 70 i~tp~~~H~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~ 112 (387)
T 3moi_A 70 IASPHQFHCEHVVQASEQGLHIIVEKPLTLSRDEADRMIEAVE 112 (387)
T ss_dssp ECSCGGGHHHHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHH
T ss_pred EcCCcHHHHHHHHHHHHCCCceeeeCCccCCHHHHHHHHHHHH
Confidence 443 33456789999999999999997 4677776655443
No 333
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=30.88 E-value=1.7e+02 Score=27.07 Aligned_cols=68 Identities=13% Similarity=0.239 Sum_probs=46.5
Q ss_pred CCHHHHHHHhhcCCCCee-EEEEecCCCCCC--CHHHHHHHcC---CCcEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008619 48 YNENEALSAFSDKPENFH-VAIVEVTTSNTD--GSFKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (559)
Q Consensus 48 ~~~~eAL~~Lre~~~~pD-LVIvDv~MPd~m--dG~eLLe~Ir---diPVImLSa~~d~e~v~kAi~~GA~DYLvK 117 (559)
.+..+..+.+.+ ...| |.+.|....... ..+++++.++ ++|||+...-.+.+.+.+++..||+.+.+-
T Consensus 33 ~~~~~~a~~~~~--~G~d~i~v~~~~~~~~~~~~~~~~i~~i~~~~~ipvi~~g~i~~~~~~~~~~~~Gad~V~i~ 106 (253)
T 1h5y_A 33 GDPVEMAVRYEE--EGADEIAILDITAAPEGRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGADKVSVN 106 (253)
T ss_dssp ECHHHHHHHHHH--TTCSCEEEEECCCCTTTHHHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCSEEEES
T ss_pred ccHHHHHHHHHH--cCCCEEEEEeCCccccCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 466666777766 5577 555555432201 1356666665 799998887888888999999998887753
No 334
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=30.83 E-value=60 Score=30.48 Aligned_cols=65 Identities=8% Similarity=0.078 Sum_probs=40.4
Q ss_pred HHHHHHHHHhhCCCEEEEECC---H---HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC--CCcEEEEecC
Q 008619 29 AAAELKFKLEAMDYIVSTFYN---E---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (559)
Q Consensus 29 ~~~~L~~~L~~~gy~V~ta~~---~---~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir--diPVImLSa~ 97 (559)
+...+...++..||.+..+.. . .++++.+.. ..+|.||+...-+. ...+.++.+. .+|||++...
T Consensus 23 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~~--~~~~~~~~~~~~~iPvV~~~~~ 95 (291)
T 3l49_A 23 AYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIA--QKPDAIIEQLGNLD--VLNPWLQKINDAGIPLFTVDTA 95 (291)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH--HCCSEEEEESSCHH--HHHHHHHHHHHTTCCEEEESCC
T ss_pred HHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHH--cCCCEEEEeCCChh--hhHHHHHHHHHCCCcEEEecCC
Confidence 445667777788999886542 2 345555666 57898887532211 1234555553 7999988654
No 335
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=30.70 E-value=1.6e+02 Score=28.64 Aligned_cols=85 Identities=13% Similarity=0.079 Sum_probs=52.0
Q ss_pred HHHHHHHHhhCCCEEEE-----ECCHHHHHHHhhcCCCCeeEEEE---------ecCCC--------CCCCH-------H
Q 008619 30 AAELKFKLEAMDYIVST-----FYNENEALSAFSDKPENFHVAIV---------EVTTS--------NTDGS-------F 80 (559)
Q Consensus 30 ~~~L~~~L~~~gy~V~t-----a~~~~eAL~~Lre~~~~pDLVIv---------Dv~MP--------d~mdG-------~ 80 (559)
.+.++.+-+..++-|.. +.+..+..+.+.+ ...|.|++ +.... +...| +
T Consensus 153 ~eii~~v~~~~~~pv~vk~~~~~~~~~~~a~~l~~--~G~d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~~~~ 230 (311)
T 1ep3_A 153 AALVKACKAVSKVPLYVKLSPNVTDIVPIAKAVEA--AGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVAL 230 (311)
T ss_dssp HHHHHHHHHHCSSCEEEEECSCSSCSHHHHHHHHH--TTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEECCChHHHHHHHHHHHH--cCCCEEEEeCCCcccccCcccCCccccCCCCcccCccchHHHH
Confidence 33444433344554431 2355666666766 56888777 33211 00111 3
Q ss_pred HHHHHcC---CCcEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008619 81 KFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (559)
Q Consensus 81 eLLe~Ir---diPVImLSa~~d~e~v~kAi~~GA~DYLv 116 (559)
++++.++ ++|||..-.-.+.+.+.+++..||+...+
T Consensus 231 ~~i~~i~~~~~ipvia~GGI~~~~d~~~~l~~GAd~V~v 269 (311)
T 1ep3_A 231 KLIHQVAQDVDIPIIGMGGVANAQDVLEMYMAGASAVAV 269 (311)
T ss_dssp HHHHHHHTTCSSCEEECSSCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 6666664 69999877777899999999999987754
No 336
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=30.48 E-value=1.1e+02 Score=30.07 Aligned_cols=61 Identities=10% Similarity=0.068 Sum_probs=37.7
Q ss_pred HHHHHHHHHhhCCCEEEEECC---H---HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC--CCcEEEEe
Q 008619 29 AAAELKFKLEAMDYIVSTFYN---E---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITS 95 (559)
Q Consensus 29 ~~~~L~~~L~~~gy~V~ta~~---~---~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir--diPVImLS 95 (559)
+...+...+...||.+..+.. . .+.++.+.. ..+|-||+--. + .+ -+.++.+. .+|+|++.
T Consensus 88 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdGiI~~~~--~-~~-~~~~~~l~~~~iPvV~i~ 156 (355)
T 3e3m_A 88 TAQSLTDVLEQGGLQLLLGYTAYSPEREEQLVETMLR--RRPEAMVLSYD--G-HT-EQTIRLLQRASIPIVEIW 156 (355)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH--TCCSEEEEECS--C-CC-HHHHHHHHHCCSCEEEES
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHh--CCCCEEEEeCC--C-CC-HHHHHHHHhCCCCEEEEC
Confidence 445666777788999886542 2 245566666 67887777332 1 12 24455443 79999884
No 337
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=30.24 E-value=79 Score=31.35 Aligned_cols=135 Identities=13% Similarity=0.094 Sum_probs=75.8
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EEC-CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCc
Q 008619 14 FPKGLRVLLLDQDSSAAAELKFKLEAM-DYIVS-TFY-NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLP 90 (559)
Q Consensus 14 ~p~glrVLIVDDD~~~~~~L~~~L~~~-gy~V~-ta~-~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiP 90 (559)
|..||||-||.--..-+..+...|... +++|+ .|. +.+.|-+...+ ....-+. .+--++|+. .++-
T Consensus 20 ~~~mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~--~g~~~~y--------~d~~ell~~-~~iD 88 (350)
T 4had_A 20 FQSMLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADR--FSVPHAF--------GSYEEMLAS-DVID 88 (350)
T ss_dssp --CCEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHH--HTCSEEE--------SSHHHHHHC-SSCS
T ss_pred ccCccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHH--cCCCeee--------CCHHHHhcC-CCCC
Confidence 456799999998876665555566654 78887 444 33334444333 2211121 123344432 2455
Q ss_pred EEEEecCC--CHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHHHHHHhcCCCCccCCCcHHHHHHHHHHhh
Q 008619 91 TIITSNIH--CLSTMMKCIALGAVEFLRKPL--SEDKLRNLWQHVVHKAFNAGGSALSDSLKPVKESVVSMLHL 160 (559)
Q Consensus 91 VImLSa~~--d~e~v~kAi~~GA~DYLvKPi--s~eeL~~iIq~vlrr~~~~~~~~~s~~Lt~re~eVl~li~~ 160 (559)
+|+++... -.+.+.+|+++|..=|+-||+ +.++...+++.+-+... ........++.+.-..+.+++..
T Consensus 89 aV~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~-~l~v~~~~R~~p~~~~~k~~i~~ 161 (350)
T 4had_A 89 AVYIPLPTSQHIEWSIKAADAGKHVVCEKPLALKAGDIDAVIAARDRNKV-VVTEAYMITYSPVWQKVRSLIDE 161 (350)
T ss_dssp EEEECSCGGGHHHHHHHHHHTTCEEEECSCCCSSGGGGHHHHHHHHHHTC-CEEECCGGGGSHHHHHHHHHHHT
T ss_pred EEEEeCCCchhHHHHHHHHhcCCEEEEeCCcccchhhHHHHHHHHHHcCC-ceeEeeeeecCHHHHHhhHhhhc
Confidence 55555443 457789999999999999998 45666665544332211 11111234555666666666654
No 338
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=30.11 E-value=1.1e+02 Score=29.81 Aligned_cols=62 Identities=8% Similarity=-0.020 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhhCCCEEEEECC---HH---HHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC--CCcEEEEe
Q 008619 28 SAAAELKFKLEAMDYIVSTFYN---EN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITS 95 (559)
Q Consensus 28 ~~~~~L~~~L~~~gy~V~ta~~---~~---eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir--diPVImLS 95 (559)
.+...++..++..||.+..+.. .+ +.++.+.. ..+|-||+--.. .+. ++++.+. .+|+|++.
T Consensus 85 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~--~~vdGiIi~~~~---~~~-~~~~~l~~~~iPvV~i~ 154 (344)
T 3kjx_A 85 EVLTGINQVLEDTELQPVVGVTDYLPEKEEKVLYEMLS--WRPSGVIIAGLE---HSE-AARAMLDAAGIPVVEIM 154 (344)
T ss_dssp HHHHHHHHHHTSSSSEEEEEECTTCHHHHHHHHHHHHT--TCCSEEEEECSC---CCH-HHHHHHHHCSSCEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHh--CCCCEEEEECCC---CCH-HHHHHHHhCCCCEEEEe
Confidence 4556677777788999885542 22 34555666 678877774321 222 4455443 79999984
No 339
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=29.97 E-value=84 Score=29.69 Aligned_cols=80 Identities=11% Similarity=0.098 Sum_probs=47.9
Q ss_pred HHHHhhCCCEEE-EE--CCHHHHHHHhhcCCC--CeeEEEEecCCCCCCCH-------HHHHHHcC----CCcEEEEecC
Q 008619 34 KFKLEAMDYIVS-TF--YNENEALSAFSDKPE--NFHVAIVEVTTSNTDGS-------FKFLETAK----DLPTIITSNI 97 (559)
Q Consensus 34 ~~~L~~~gy~V~-ta--~~~~eAL~~Lre~~~--~pDLVIvDv~MPd~mdG-------~eLLe~Ir----diPVImLSa~ 97 (559)
.+.++..|..+. .+ .+..+.++.+.. . ..|.|+++-..|+ .+| ++.++.++ ++||++.-+-
T Consensus 106 ~~~i~~~g~~igv~~~p~t~~e~~~~~~~--~~~~~d~vl~~sv~pg-~~g~~~~~~~l~~i~~~~~~~~~~pi~v~GGI 182 (228)
T 1h1y_A 106 IQSIKAKGMRPGVSLRPGTPVEEVFPLVE--AENPVELVLVMTVEPG-FGGQKFMPEMMEKVRALRKKYPSLDIEVDGGL 182 (228)
T ss_dssp HHHHHHTTCEEEEEECTTSCGGGGHHHHH--SSSCCSEEEEESSCTT-CSSCCCCGGGHHHHHHHHHHCTTSEEEEESSC
T ss_pred HHHHHHcCCCEEEEEeCCCCHHHHHHHHh--cCCCCCEEEEEeecCC-CCcccCCHHHHHHHHHHHHhcCCCCEEEECCc
Confidence 344444566554 34 233445544443 2 5799999877765 333 44444443 6787655444
Q ss_pred CCHHHHHHHHHcCCCEEEeC
Q 008619 98 HCLSTMMKCIALGAVEFLRK 117 (559)
Q Consensus 98 ~d~e~v~kAi~~GA~DYLvK 117 (559)
..+.+.+++.+||+.+++=
T Consensus 183 -~~~ni~~~~~aGaD~vvvG 201 (228)
T 1h1y_A 183 -GPSTIDVAASAGANCIVAG 201 (228)
T ss_dssp -STTTHHHHHHHTCCEEEES
T ss_pred -CHHHHHHHHHcCCCEEEEC
Confidence 4467888889999998763
No 340
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=29.96 E-value=69 Score=29.42 Aligned_cols=71 Identities=8% Similarity=0.071 Sum_probs=47.1
Q ss_pred eCC-HHHHHHHHHHHhhCCCEEEEECC---------HHHHHHHhhcCCCCeeEEEEecC-----CCCCCCHHHHHHHc-C
Q 008619 24 DQD-SSAAAELKFKLEAMDYIVSTFYN---------ENEALSAFSDKPENFHVAIVEVT-----TSNTDGSFKFLETA-K 87 (559)
Q Consensus 24 DDD-~~~~~~L~~~L~~~gy~V~ta~~---------~~eAL~~Lre~~~~pDLVIvDv~-----MPd~mdG~eLLe~I-r 87 (559)
++. ....+.+...|+..|+.|..--+ .+..++.|++ .|+||..+. -+|.+.++|+.-.. .
T Consensus 22 ~~e~~~~~~~l~~~l~~~G~~v~~P~~~~~~~~~~i~~~d~~~i~~----aD~vVA~ldpf~g~~~D~GTafEiGyA~Al 97 (161)
T 2f62_A 22 PDMGASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKD----CDAVIADLSPFRGHEPDCGTAFEVGCAAAL 97 (161)
T ss_dssp TTTTHHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHH----CSEEEEECCCCSSSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHCCCEEECCCccCcchHHHHHHHHHHHHHh----CCEEEEEecCCCCCCCCCcHHHHHHHHHHC
Confidence 566 78889999999999998753111 2223556655 699998876 23312346766544 4
Q ss_pred CCcEEEEecCC
Q 008619 88 DLPTIITSNIH 98 (559)
Q Consensus 88 diPVImLSa~~ 98 (559)
..|||++....
T Consensus 98 gKPVi~l~~d~ 108 (161)
T 2f62_A 98 NKMVLTFTSDR 108 (161)
T ss_dssp TCEEEEECSCC
T ss_pred CCEEEEEEcCc
Confidence 89999997653
No 341
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=29.96 E-value=71 Score=26.92 Aligned_cols=48 Identities=27% Similarity=0.417 Sum_probs=37.7
Q ss_pred ecCHHHHHHHHHHHHHhCCCCCCChHHHhhc-CCCCCCHHHHHHhhhhhhh
Q 008619 321 DWTPELHKKFVQAVEQLGVDQAIPSRILELM-KVEGLTRHNVASHLQKYRM 370 (559)
Q Consensus 321 ~Wt~~lh~~Fv~av~~lg~~~a~pk~il~~m-~v~~lt~~~v~shlQkyr~ 370 (559)
.||.|=.+.|++|+.++|.+ +|.+--.+= -|+|=|-.+|+.|-+++..
T Consensus 10 ~WT~eEd~~L~~al~~~~~~--~~~rW~~IA~~vpGRT~~q~k~ry~~l~~ 58 (93)
T 2cjj_A 10 PWSAKENKAFERALAVYDKD--TPDRWANVARAVEGRTPEEVKKHYEILVE 58 (93)
T ss_dssp SCCHHHHHHHHHHHHHSCTT--CTTHHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCC--CCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 69999999999999999854 565443322 3579999999999887753
No 342
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=29.92 E-value=1.1e+02 Score=30.83 Aligned_cols=95 Identities=15% Similarity=0.190 Sum_probs=60.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEEEEec
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSN 96 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVImLSa 96 (559)
.|||||+.. =.+-..+...|.+ .++|+.+.-..+.++.+.+ ....+-+|+. |--.+.+.+++.-+|+-+.
T Consensus 16 ~mkilvlGa-G~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~---~~~~~~~d~~-----d~~~l~~~~~~~DvVi~~~ 85 (365)
T 3abi_A 16 HMKVLILGA-GNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKE---FATPLKVDAS-----NFDKLVEVMKEFELVIGAL 85 (365)
T ss_dssp CCEEEEECC-SHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTT---TSEEEECCTT-----CHHHHHHHHTTCSEEEECC
T ss_pred ccEEEEECC-CHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhc---cCCcEEEecC-----CHHHHHHHHhCCCEEEEec
Confidence 479999998 5556677777765 5888877666666666655 2344555552 3444555566555544433
Q ss_pred --CCCHHHHHHHHHcCCCEEEeCCCCHH
Q 008619 97 --IHCLSTMMKCIALGAVEFLRKPLSED 122 (559)
Q Consensus 97 --~~d~e~v~kAi~~GA~DYLvKPis~e 122 (559)
.-....+..|+++|.+ |+.--+..+
T Consensus 86 p~~~~~~v~~~~~~~g~~-yvD~s~~~~ 112 (365)
T 3abi_A 86 PGFLGFKSIKAAIKSKVD-MVDVSFMPE 112 (365)
T ss_dssp CGGGHHHHHHHHHHHTCE-EEECCCCSS
T ss_pred CCcccchHHHHHHhcCcc-eEeeeccch
Confidence 2345678889999975 776544443
No 343
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=29.88 E-value=73 Score=30.71 Aligned_cols=48 Identities=15% Similarity=0.164 Sum_probs=30.8
Q ss_pred HHHHHHHcC---CCcEEEEecCCCHH---HHHHHHHcCCCEEEeCCCCHHHHHHH
Q 008619 79 SFKFLETAK---DLPTIITSNIHCLS---TMMKCIALGAVEFLRKPLSEDKLRNL 127 (559)
Q Consensus 79 G~eLLe~Ir---diPVImLSa~~d~e---~v~kAi~~GA~DYLvKPis~eeL~~i 127 (559)
++++++.++ ++||++++.. +.. .+..+.+.||+++++-....+++...
T Consensus 82 ~~~~i~~ir~~~~~Pv~~m~~~-~~~~~~~~~~a~~aGadgv~v~d~~~~~~~~~ 135 (262)
T 1rd5_A 82 VLEMLREVTPELSCPVVLLSYY-KPIMFRSLAKMKEAGVHGLIVPDLPYVAAHSL 135 (262)
T ss_dssp HHHHHHHHGGGCSSCEEEECCS-HHHHSCCTHHHHHTTCCEEECTTCBTTTHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEecC-cHHHHHHHHHHHHcCCCEEEEcCCChhhHHHH
Confidence 456677776 6899988522 211 12348999999999866555554443
No 344
>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; streptococcus pneumonia reductive methylation, structural genomics, PSI-2, protein initiative; HET: MLY; 2.00A {Streptococcus pneumoniae} PDB: 2ho5_A
Probab=29.76 E-value=2.8e+02 Score=27.08 Aligned_cols=103 Identities=12% Similarity=0.153 Sum_probs=58.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEEEEe
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITS 95 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVImLS 95 (559)
+++|.||.--..-...+..+....+++++ .+....+..+.+.+. ....-+. .+--+++ -.++-+|+++
T Consensus 1 ~~~vgiiG~G~~g~~~~~~l~~~~~~~~~~v~d~~~~~~~~~~~~-~~~~~~~--------~~~~~~l--~~~~D~V~i~ 69 (325)
T 2ho3_A 1 MLKLGVIGTGAISHHFIEAAHTSGEYQLVAIYSRKLETAATFASR-YQNIQLF--------DQLEVFF--KSSFDLVYIA 69 (325)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTSEEEEEEECSSHHHHHHHGGG-SSSCEEE--------SCHHHHH--TSSCSEEEEC
T ss_pred CeEEEEEeCCHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHH-cCCCeEe--------CCHHHHh--CCCCCEEEEe
Confidence 36889998876655544444443467776 444333333333331 1111111 1223344 1355566665
Q ss_pred cCC--CHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHH
Q 008619 96 NIH--CLSTMMKCIALGAVEFLRKPL--SEDKLRNLWQH 130 (559)
Q Consensus 96 a~~--d~e~v~kAi~~GA~DYLvKPi--s~eeL~~iIq~ 130 (559)
... -.+.+..|+++|..=|+-||+ +.++....++.
T Consensus 70 tp~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~ 108 (325)
T 2ho3_A 70 SPNSLHFAQAKAALSAGKHVILEKPAVSQPQEWFDLIQT 108 (325)
T ss_dssp SCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHcCCcEEEecCCcCCHHHHHHHHHH
Confidence 543 457788999999999999998 66766665443
No 345
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=29.32 E-value=1.2e+02 Score=25.54 Aligned_cols=89 Identities=15% Similarity=0.165 Sum_probs=50.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC-CHHHHHHHhhcCCCCeeEEEEecCCCCCCC-HH---HHHHHcCCCcE
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFY-NENEALSAFSDKPENFHVAIVEVTTSNTDG-SF---KFLETAKDLPT 91 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~-~~~eAL~~Lre~~~~pDLVIvDv~MPd~md-G~---eLLe~IrdiPV 91 (559)
+..|.++|.++...+.+. ..++.+.... +..+.++.+.- ...|+||+-+. + .. -. ..++.+....|
T Consensus 29 g~~V~~id~~~~~~~~~~----~~~~~~~~gd~~~~~~l~~~~~--~~~d~vi~~~~--~-~~~n~~~~~~a~~~~~~~i 99 (141)
T 3llv_A 29 GKKVLAVDKSKEKIELLE----DEGFDAVIADPTDESFYRSLDL--EGVSAVLITGS--D-DEFNLKILKALRSVSDVYA 99 (141)
T ss_dssp TCCEEEEESCHHHHHHHH----HTTCEEEECCTTCHHHHHHSCC--TTCSEEEECCS--C-HHHHHHHHHHHHHHCCCCE
T ss_pred CCeEEEEECCHHHHHHHH----HCCCcEEECCCCCHHHHHhCCc--ccCCEEEEecC--C-HHHHHHHHHHHHHhCCceE
Confidence 678999999987655444 3467665433 23445554433 46899988654 2 11 12 22333344555
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEe
Q 008619 92 IITSNIHCLSTMMKCIALGAVEFLR 116 (559)
Q Consensus 92 ImLSa~~d~e~v~kAi~~GA~DYLv 116 (559)
|+.+.... ......+.|++..+.
T Consensus 100 ia~~~~~~--~~~~l~~~G~~~vi~ 122 (141)
T 3llv_A 100 IVRVSSPK--KKEEFEEAGANLVVL 122 (141)
T ss_dssp EEEESCGG--GHHHHHHTTCSEEEE
T ss_pred EEEEcChh--HHHHHHHcCCCEEEC
Confidence 55554433 344556889875553
No 346
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=29.28 E-value=1.4e+02 Score=28.89 Aligned_cols=53 Identities=17% Similarity=0.177 Sum_probs=38.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhC--CC----------EEE-EECCHHHHHHHhhcCCCCeeEEEEecCCC
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAM--DY----------IVS-TFYNENEALSAFSDKPENFHVAIVEVTTS 74 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~--gy----------~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MP 74 (559)
..+|..||-|+...+..++.+ .. ++ +|. .+.++.+.+.. . ..||+||+|...+
T Consensus 98 ~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~--~--~~fD~Ii~d~~~~ 163 (281)
T 1mjf_A 98 VDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN--N--RGFDVIIADSTDP 163 (281)
T ss_dssp CSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH--C--CCEEEEEEECCCC
T ss_pred CCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc--c--CCeeEEEECCCCC
Confidence 358999999999999888877 32 22 233 56777766654 3 6799999998654
No 347
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=29.20 E-value=1.3e+02 Score=26.44 Aligned_cols=49 Identities=10% Similarity=0.072 Sum_probs=38.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEec
Q 008619 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEV 71 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv 71 (559)
.+.+|.++...... ..|...+..++.+.+..+++++|.. .+.|.++.+.
T Consensus 115 ~g~~v~~~~g~~~~-----~~l~~~~~~~~~~~~~~~~~~~l~~--g~vDa~~~~~ 163 (233)
T 1ii5_A 115 KNKEVAVVRDTTAV-----DWANFYQADVRETNNLTAAITLLQK--KQVEAVMFDR 163 (233)
T ss_dssp TTCEEEEETTSHHH-----HHHHHTTCEEEEESSHHHHHHHHHT--TSCSEEEEEH
T ss_pred CCCeEEEECCccHH-----HHHHHcCCCeEEcCCHHHHHHHHHc--CCccEEEeCH
Confidence 46788887766443 2344447899999999999999999 8899999976
No 348
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=29.06 E-value=1.3e+02 Score=25.94 Aligned_cols=40 Identities=15% Similarity=0.283 Sum_probs=28.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHh
Q 008619 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAF 57 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~L 57 (559)
.-|+|-|.|...++.+....++.||+|.++++..+.-..|
T Consensus 78 vliiiydqdqnrleefsrevrrrgfevrtvtspddfkksl 117 (134)
T 2l69_A 78 VLIIIYDQDQNRLEEFSREVRRRGFEVRTVTSPDDFKKSL 117 (134)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHH
T ss_pred EEEEEEeCchhHHHHHHHHHHhcCceEEEecChHHHHHHH
Confidence 4555667777777777777777788888887777665544
No 349
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=28.97 E-value=1.1e+02 Score=29.73 Aligned_cols=66 Identities=11% Similarity=0.077 Sum_probs=38.4
Q ss_pred HHHHHHHHHhhCCCEEEEECC---HH---HHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEEEEecC
Q 008619 29 AAAELKFKLEAMDYIVSTFYN---EN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSNI 97 (559)
Q Consensus 29 ~~~~L~~~L~~~gy~V~ta~~---~~---eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVImLSa~ 97 (559)
+...++..+...||.+..+.+ .+ +.++.+.. ..+|-||+--.... ..-.+++.....+|+|++...
T Consensus 76 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiI~~~~~~~-~~~~~~l~~~~~iPvV~~~~~ 147 (340)
T 1qpz_A 76 IIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQ--KRVDGLLVMCSEYP-EPLLAMLEEYRHIPMVVMDWG 147 (340)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH--TTCSEEEECCSCCC-HHHHHHHHTTTTSCEEEEEES
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHc--CCCCEEEEeCCCCC-hHHHHHHHhhCCCCEEEEecc
Confidence 445566677778999886532 22 24566666 57898887432111 112344443347999988654
No 350
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=28.91 E-value=1.3e+02 Score=28.61 Aligned_cols=66 Identities=9% Similarity=0.130 Sum_probs=45.6
Q ss_pred CHHHHHHHhhcCCCCee-EEEEecCCCCC--CCHHHHHHHcC---CCcEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008619 49 NENEALSAFSDKPENFH-VAIVEVTTSNT--DGSFKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (559)
Q Consensus 49 ~~~eAL~~Lre~~~~pD-LVIvDv~MPd~--mdG~eLLe~Ir---diPVImLSa~~d~e~v~kAi~~GA~DYLv 116 (559)
+..+..+.+.+ ..+| |.+.|+.-... ..-+++++.++ .+|||+--.-.+.+.+.+++..||+..++
T Consensus 36 ~~~~~a~~~~~--~G~~~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ipvi~~Ggi~~~~~~~~~l~~Gad~V~i 107 (247)
T 3tdn_A 36 LLRDWVVEVEK--RGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLRGADKVSI 107 (247)
T ss_dssp EHHHHHHHHHH--TTCSEEEEEETTTTTCSSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEECC
T ss_pred CHHHHHHHHHH--cCCCEEEEEecCcccCCCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCeeeh
Confidence 45566666666 4555 44567643210 22367888775 79999888888889999999999887764
No 351
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=28.89 E-value=36 Score=31.50 Aligned_cols=43 Identities=16% Similarity=0.315 Sum_probs=32.7
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEE
Q 008619 19 RVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIV 69 (559)
Q Consensus 19 rVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIv 69 (559)
+|+|||=-.-....+.+.|+++|++++.+.+.++. .. +|.||+
T Consensus 4 ~I~iiD~g~~n~~si~~al~~~G~~~~v~~~~~~l----~~----~D~lil 46 (211)
T 4gud_A 4 NVVIIDTGCANISSVKFAIERLGYAVTISRDPQVV----LA----ADKLFL 46 (211)
T ss_dssp CEEEECCCCTTHHHHHHHHHHTTCCEEEECCHHHH----HH----CSEEEE
T ss_pred EEEEEECCCChHHHHHHHHHHCCCEEEEECCHHHH----hC----CCEEEE
Confidence 79999966555677889999999999988876543 23 577776
No 352
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Probab=28.86 E-value=4e+02 Score=25.63 Aligned_cols=93 Identities=10% Similarity=0.077 Sum_probs=57.2
Q ss_pred HHHHHhhCC--CEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHH---HcC--CCcEEEEecCCCHHHHHH
Q 008619 33 LKFKLEAMD--YIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLE---TAK--DLPTIITSNIHCLSTMMK 105 (559)
Q Consensus 33 L~~~L~~~g--y~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe---~Ir--diPVImLSa~~d~e~v~k 105 (559)
|++.|..-. +.+..+-+..+.++.+.. ..+|.|++|+.-.. .+--++.. .+. ..++++=+...+...+..
T Consensus 10 ~k~~l~~g~~~~~~~l~v~~p~~~e~a~~--~gaD~v~lDlEd~p-~~~~~a~~~~~~~~~~~~~~~VRv~~~~~~~i~~ 86 (256)
T 1dxe_A 10 FKAALAAKQVQIGCWSALSNPISTEVLGL--AGFDWLVLDGEHAP-NDISTFIPQLMALKGSASAPVVRVPTNEPVIIKR 86 (256)
T ss_dssp HHHHHHTTCCEEEEEECSCSHHHHHHHTT--SCCSEEEEESSSSS-CCHHHHHHHHHHTTTCSSEEEEECSSSCHHHHHH
T ss_pred HHHHHHCCCCeEEEEEeCCCHHHHHHHHh--CCCCEEEEcCCCCC-CCHHHHHHHHHHHHhCCCcEEEECCCCCHHHHHH
Confidence 555555422 333433345556666666 57999999985443 33322222 222 466766666778888999
Q ss_pred HHHcCCCEEEe-CCCCHHHHHHHH
Q 008619 106 CIALGAVEFLR-KPLSEDKLRNLW 128 (559)
Q Consensus 106 Ai~~GA~DYLv-KPis~eeL~~iI 128 (559)
++..|+++.++ |--+.+++..++
T Consensus 87 ~l~~g~~gI~~P~V~s~~ev~~~~ 110 (256)
T 1dxe_A 87 LLDIGFYNFLIPFVETKEEAELAV 110 (256)
T ss_dssp HHHTTCCEEEESCCCSHHHHHHHH
T ss_pred HHhcCCceeeecCcCCHHHHHHHH
Confidence 99999988644 344678886543
No 353
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=28.83 E-value=2.2e+02 Score=26.51 Aligned_cols=67 Identities=18% Similarity=0.304 Sum_probs=46.3
Q ss_pred CHHHHHHHhhcCCCCeeE-EEEecCCCCCCC--HHHHHHHcC---CCcEEEEecCCCHHHHHHHHHc---CCCEEEeC
Q 008619 49 NENEALSAFSDKPENFHV-AIVEVTTSNTDG--SFKFLETAK---DLPTIITSNIHCLSTMMKCIAL---GAVEFLRK 117 (559)
Q Consensus 49 ~~~eAL~~Lre~~~~pDL-VIvDv~MPd~md--G~eLLe~Ir---diPVImLSa~~d~e~v~kAi~~---GA~DYLvK 117 (559)
+..+.++.+.+ ..+|. ++++..-.+... .+++++.++ ++|||....-.+.+.+.++++. ||+.+++=
T Consensus 150 ~~~e~~~~~~~--~G~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~vG 225 (244)
T 2y88_A 150 DLWDVLERLDS--EGCSRFVVTDITKDGTLGGPNLDLLAGVADRTDAPVIASGGVSSLDDLRAIATLTHRGVEGAIVG 225 (244)
T ss_dssp EHHHHHHHHHH--TTCCCEEEEETTTTTTTSCCCHHHHHHHHTTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEEC
T ss_pred CHHHHHHHHHh--CCCCEEEEEecCCccccCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHhhccCCCCEEEEc
Confidence 34566666666 45774 456665433112 356777764 6999998888888999999998 99988763
No 354
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=28.82 E-value=1.5e+02 Score=26.72 Aligned_cols=66 Identities=12% Similarity=0.143 Sum_probs=45.0
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhCCC--EEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHc
Q 008619 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDY--IVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA 86 (559)
Q Consensus 14 ~p~glrVLIVDDD~~~~~~L~~~L~~~gy--~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~I 86 (559)
++.+.+|..||-++...+..++.+...++ .|. ...+..+.+..+ . . ||+|++|.... +-..+++.+
T Consensus 78 ~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-~--~-fD~v~~~~~~~---~~~~~l~~~ 146 (210)
T 3c3p_A 78 ISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQ-R--D-IDILFMDCDVF---NGADVLERM 146 (210)
T ss_dssp SCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTC-C--S-EEEEEEETTTS---CHHHHHHHH
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccC-C--C-CCEEEEcCChh---hhHHHHHHH
Confidence 34357999999999999999988877664 243 556666554322 2 5 99999996533 345556555
No 355
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=28.80 E-value=91 Score=31.98 Aligned_cols=53 Identities=9% Similarity=0.028 Sum_probs=41.1
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCC---EEE-EECCHHHHHHHhhcCCCCeeEEEEec
Q 008619 19 RVLLLDQDSSAAAELKFKLEAMDY---IVS-TFYNENEALSAFSDKPENFHVAIVEV 71 (559)
Q Consensus 19 rVLIVDDD~~~~~~L~~~L~~~gy---~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv 71 (559)
+|.-||-++...+..+.-++..|+ .+. .+.+..+.+..+......||+||+|-
T Consensus 237 ~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~DP 293 (385)
T 2b78_A 237 ATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIIDP 293 (385)
T ss_dssp EEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEEECC
Confidence 799999999999998888887765 243 67888887776543225799999985
No 356
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=28.75 E-value=1.5e+02 Score=29.74 Aligned_cols=55 Identities=18% Similarity=0.178 Sum_probs=34.8
Q ss_pred HHHHHHHcC-CCcEEEEec-----CCCHHHHHHHHHcCCCEEEe-CCCCHHHHHHHHHHHHH
Q 008619 79 SFKFLETAK-DLPTIITSN-----IHCLSTMMKCIALGAVEFLR-KPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 79 G~eLLe~Ir-diPVImLSa-----~~d~e~v~kAi~~GA~DYLv-KPis~eeL~~iIq~vlr 133 (559)
+..+.+.+. .+|+|++-- ......+....+.|+.-+|. +.++.++|.+.|..++.
T Consensus 262 ~~Tv~E~~a~G~P~Ilip~p~~~~~~Q~~NA~~l~~~G~a~~l~~~~~~~~~L~~~i~~ll~ 323 (365)
T 3s2u_A 262 ALTVSELTAAGLPAFLVPLPHAIDDHQTRNAEFLVRSGAGRLLPQKSTGAAELAAQLSEVLM 323 (365)
T ss_dssp HHHHHHHHHHTCCEEECC-----CCHHHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHHHHH
T ss_pred cchHHHHHHhCCCeEEeccCCCCCcHHHHHHHHHHHCCCEEEeecCCCCHHHHHHHHHHHHC
Confidence 445555554 899887642 12233355567788765554 35678999999888774
No 357
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=28.67 E-value=2.6e+02 Score=25.34 Aligned_cols=78 Identities=12% Similarity=0.087 Sum_probs=46.1
Q ss_pred EECCHHHHHHHhhc-CCCCeeEEEEecCCCCCCCHHHHHHHcCC-C---cEEEEecCCCHHHHHHHHHcCCCEEEeCCCC
Q 008619 46 TFYNENEALSAFSD-KPENFHVAIVEVTTSNTDGSFKFLETAKD-L---PTIITSNIHCLSTMMKCIALGAVEFLRKPLS 120 (559)
Q Consensus 46 ta~~~~eAL~~Lre-~~~~pDLVIvDv~MPd~mdG~eLLe~Ird-i---PVImLSa~~d~e~v~kAi~~GA~DYLvKPis 120 (559)
...+.+++.++++. ....+++|-+.+..+ ++.+.++.++. . .+|-++.-.+.+.+..+++.||+.. +-|..
T Consensus 17 ~~~~~~~~~~~~~~~~~~G~~~iev~~~~~---~~~~~i~~ir~~~~~~~~ig~~~v~~~~~~~~a~~~Gad~i-v~~~~ 92 (205)
T 1wa3_A 17 RANSVEEAKEKALAVFEGGVHLIEITFTVP---DADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVESGAEFI-VSPHL 92 (205)
T ss_dssp CCSSHHHHHHHHHHHHHTTCCEEEEETTST---THHHHHHHTHHHHHTTCEEEEESCCSHHHHHHHHHHTCSEE-ECSSC
T ss_pred ecCCHHHHHHHHHHHHHCCCCEEEEeCCCh---hHHHHHHHHHHHCCCCcEEEecccCCHHHHHHHHHcCCCEE-EcCCC
Confidence 44555555554432 114577776655544 36777777762 1 2344434456778899999999866 66765
Q ss_pred HHHHHHH
Q 008619 121 EDKLRNL 127 (559)
Q Consensus 121 ~eeL~~i 127 (559)
..++.+.
T Consensus 93 ~~~~~~~ 99 (205)
T 1wa3_A 93 DEEISQF 99 (205)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 5555443
No 358
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=28.65 E-value=2.3e+02 Score=26.92 Aligned_cols=65 Identities=14% Similarity=0.161 Sum_probs=39.1
Q ss_pred HHHHHHHHHhhCCCEEEEEC----CHHH---HHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHc--CCCcEEEEecC
Q 008619 29 AAAELKFKLEAMDYIVSTFY----NENE---ALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA--KDLPTIITSNI 97 (559)
Q Consensus 29 ~~~~L~~~L~~~gy~V~ta~----~~~e---AL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~I--rdiPVImLSa~ 97 (559)
+...++..++..||.+..+. +... .++.+.. ..+|.||+.-..+. .....++.+ ..+|||++...
T Consensus 18 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgiIi~~~~~~--~~~~~~~~~~~~~iPvV~~~~~ 91 (313)
T 2h3h_A 18 VEQGVKAAGKALGVDTKFFVPQKEDINAQLQMLESFIA--EGVNGIAIAPSDPT--AVIPTIKKALEMGIPVVTLDTD 91 (313)
T ss_dssp HHHHHHHHHHHHTCEEEEECCSSSCHHHHHHHHHHHHH--TTCSEEEECCSSTT--TTHHHHHHHHHTTCCEEEESSC
T ss_pred HHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHH--cCCCEEEEeCCChH--HHHHHHHHHHHCCCeEEEeCCC
Confidence 44556666777799988653 2333 4455555 57998887543222 122445555 37999988654
No 359
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=28.65 E-value=1.1e+02 Score=28.62 Aligned_cols=64 Identities=13% Similarity=0.201 Sum_probs=37.8
Q ss_pred HHHHHHHHHhhCCCEEEEECC---H---HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHc--CCCcEEEEec
Q 008619 29 AAAELKFKLEAMDYIVSTFYN---E---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA--KDLPTIITSN 96 (559)
Q Consensus 29 ~~~~L~~~L~~~gy~V~ta~~---~---~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~I--rdiPVImLSa 96 (559)
+...++..++..||.+..+.+ . .+.++.+.. ..+|-||+--...+ .-.+.++.+ ..+|||++..
T Consensus 19 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgiIi~~~~~~--~~~~~~~~~~~~~iPvV~~~~ 90 (283)
T 2ioy_A 19 LKNGAEEKAKELGYKIIVEDSQNDSSKELSNVEDLIQ--QKVDVLLINPVDSD--AVVTAIKEANSKNIPVITIDR 90 (283)
T ss_dssp HHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHH--TTCSEEEECCSSTT--TTHHHHHHHHHTTCCEEEESS
T ss_pred HHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHHHH--cCCCEEEEeCCchh--hhHHHHHHHHHCCCeEEEecC
Confidence 344556667777999886542 2 234555556 67998887432222 112445555 3799998854
No 360
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=28.49 E-value=2.1e+02 Score=28.94 Aligned_cols=88 Identities=11% Similarity=0.167 Sum_probs=55.5
Q ss_pred CCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC---CCcEEEEecCCCH-------------HHH
Q 008619 41 DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTIITSNIHCL-------------STM 103 (559)
Q Consensus 41 gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir---diPVImLSa~~d~-------------e~v 103 (559)
.+.+. ++.+.++|+...+...++..|. .++..++...++.+++.++ ++||.+|--...- +.+
T Consensus 39 ~~~lEvc~~s~~~a~~A~~gGAdRIELc-~~l~~GGlTPS~g~i~~a~~~~~ipV~vMIRPRgGdF~Ys~~E~~~M~~dI 117 (287)
T 3iwp_A 39 GFLMEVCVDSVESAVNAERGGADRIELC-SGLSEGGTTPSMGVLQVVKQSVQIPVFVMIRPRGGDFLYSDREIEVMKADI 117 (287)
T ss_dssp CSEEEEEESSHHHHHHHHHHTCSEEEEC-BCGGGTCBCCCHHHHHHHHTTCCSCEEEECCSSSSCSCCCHHHHHHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHhCCCEEEEC-CCCCCCCCCCCHHHHHHHHHhcCCCeEEEEecCCCCcccCHHHHHHHHHHH
Confidence 35555 7889999998887743334433 2222333123566777664 7999888765443 567
Q ss_pred HHHHHcCCCEEEeCC------CCHHHHHHHHH
Q 008619 104 MKCIALGAVEFLRKP------LSEDKLRNLWQ 129 (559)
Q Consensus 104 ~kAi~~GA~DYLvKP------is~eeL~~iIq 129 (559)
..+.++||++++.-- ++.+.+...+.
T Consensus 118 ~~~~~~GAdGvVfG~L~~dg~iD~~~~~~Li~ 149 (287)
T 3iwp_A 118 RLAKLYGADGLVFGALTEDGHIDKELCMSLMA 149 (287)
T ss_dssp HHHHHTTCSEEEECCBCTTSCBCHHHHHHHHH
T ss_pred HHHHHcCCCEEEEeeeCCCCCcCHHHHHHHHH
Confidence 888999999998874 44445554433
No 361
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=28.32 E-value=76 Score=30.35 Aligned_cols=69 Identities=10% Similarity=-0.073 Sum_probs=43.8
Q ss_pred CCHHHHHHHhhcCCCCeeEEEEec---CC-CCCCCHHHHHHHcC---CCcEE--EEecCCCHHHHHHHHHcCCCEEEeCC
Q 008619 48 YNENEALSAFSDKPENFHVAIVEV---TT-SNTDGSFKFLETAK---DLPTI--ITSNIHCLSTMMKCIALGAVEFLRKP 118 (559)
Q Consensus 48 ~~~~eAL~~Lre~~~~pDLVIvDv---~M-Pd~mdG~eLLe~Ir---diPVI--mLSa~~d~e~v~kAi~~GA~DYLvKP 118 (559)
.+..++++.+.+ ...|++=+|+ +. |....|+++++.++ +.|+. +++.+ ....+..+.++||+.+.+-.
T Consensus 17 ~~l~~~i~~~~~--~Gad~ihldi~DG~fvp~~~~g~~~v~~lr~~~~~~~~vhlmv~d-p~~~i~~~~~aGadgv~vh~ 93 (230)
T 1tqj_A 17 SRLGEEIKAVDE--AGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVE-PEKYVEDFAKAGADIISVHV 93 (230)
T ss_dssp GGHHHHHHHHHH--TTCSEEEEEEEBSSSSSCBCBCHHHHHHHGGGCCSEEEEEEESSS-GGGTHHHHHHHTCSEEEEEC
T ss_pred hHHHHHHHHHHH--cCCCEEEEEEEecCCCcchhhhHHHHHHHHhhcCCcEEEEEEccC-HHHHHHHHHHcCCCEEEECc
Confidence 345566666665 3455554444 22 23134778888887 45776 67754 33467889999999997765
Q ss_pred C
Q 008619 119 L 119 (559)
Q Consensus 119 i 119 (559)
.
T Consensus 94 e 94 (230)
T 1tqj_A 94 E 94 (230)
T ss_dssp S
T ss_pred c
Confidence 5
No 362
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=28.28 E-value=1e+02 Score=29.16 Aligned_cols=108 Identities=10% Similarity=0.100 Sum_probs=62.7
Q ss_pred CccCcCCCCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC
Q 008619 8 LSAWKDFPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK 87 (559)
Q Consensus 8 ~s~~~~~p~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir 87 (559)
+..++++ ++.+|.+..+.. ... +|...++.+..+.+..+++..|.. .+.|.+++|.. ....+++...
T Consensus 156 i~s~~dL-~G~~v~v~~g~~-~~~----~l~~~~~~~~~~~~~~~~~~~l~~--g~vDa~i~~~~-----~~~~~~~~~~ 222 (283)
T 2yln_A 156 IKSIADI-KGVKTAQSLTSN-YGE----KAKAAGAQLVPVDGLAQSLTLIEQ--KRADATLNDEL-----AVLDYLKKNP 222 (283)
T ss_dssp CCSGGGC-TTSEEEECTTSH-HHH----HHHHTTCEEEECSSHHHHHHHHHT--TSCCEEEEEHH-----HHHHHHHHST
T ss_pred CCCHHHh-CCCEEEEecCch-HHH----HHHHcCCeEEEeCCHHHHHHHHHc--CCCCEEEecHH-----HHHHHHHhCC
Confidence 3445555 577888765543 333 344448888899999999999999 78999999762 2333344433
Q ss_pred CCcEEEEe-cCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHh
Q 008619 88 DLPTIITS-NIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFN 137 (559)
Q Consensus 88 diPVImLS-a~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~~ 137 (559)
...+.++. ..... .....-.+.|- ..+|...++.++.....
T Consensus 223 ~~~l~~~~~~~~~~-------~~~~~i~~~k~--~~~l~~~i~~al~~l~~ 264 (283)
T 2yln_A 223 NAGVKIVWSAPADE-------KVGSGLIVNKG--NDEAVAKFSTAINELKA 264 (283)
T ss_dssp TSSEEEEEECCGGG-------CEEECCEEESS--CHHHHHHHHHHHHHHHH
T ss_pred CCcEEEccCcccCC-------cccEEEEEeCC--CHHHHHHHHHHHHHHHH
Confidence 22233332 11100 01111123343 46788888888876543
No 363
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=28.17 E-value=3.7e+02 Score=25.05 Aligned_cols=65 Identities=11% Similarity=0.145 Sum_probs=39.9
Q ss_pred HHHHHHHHHhhCCCEEEEECC---HH---HHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC--CCcEEEEecCC
Q 008619 29 AAAELKFKLEAMDYIVSTFYN---EN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNIH 98 (559)
Q Consensus 29 ~~~~L~~~L~~~gy~V~ta~~---~~---eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir--diPVImLSa~~ 98 (559)
+...++..++..||.+..+.. .. +.++.+.. ..+|-||+-..... .-.+++.+. .+|||++....
T Consensus 38 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgii~~~~~~~---~~~~~~~~~~~~iPvV~~~~~~ 110 (293)
T 2iks_A 38 IANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQ--RQVDAIIVSTSLPP---EHPFYQRWANDPFPIVALDRAL 110 (293)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH--TTCSEEEECCSSCT---TCHHHHTTTTSSSCEEEEESCC
T ss_pred HHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHH--cCCCEEEEeCCCCC---cHHHHHHHHhCCCCEEEECCcc
Confidence 445566667778999885532 22 34566666 57998887443322 123555554 69999887543
No 364
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=28.09 E-value=2.7e+02 Score=26.88 Aligned_cols=66 Identities=12% Similarity=0.132 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhhCCCEEEEECC---H---HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEEEEec
Q 008619 27 SSAAAELKFKLEAMDYIVSTFYN---E---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSN 96 (559)
Q Consensus 27 ~~~~~~L~~~L~~~gy~V~ta~~---~---~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVImLSa 96 (559)
..+...++..+...||.+..+.. . .+.++.+.. ..+|-||+--.... ..-++.+.. ..+|+|++..
T Consensus 78 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdGiIi~~~~~~-~~~~~~l~~-~~iPvV~~~~ 149 (339)
T 3h5o_A 78 LETLTGIETVLDAAGYQMLIGNSHYDAGQELQLLRAYLQ--HRPDGVLITGLSHA-EPFERILSQ-HALPVVYMMD 149 (339)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHT--TCCSEEEEECSCCC-TTHHHHHHH-TTCCEEEEES
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHc--CCCCEEEEeCCCCC-HHHHHHHhc-CCCCEEEEee
Confidence 34667778888889999886543 2 345556666 67887776432222 222332222 3799998854
No 365
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=27.84 E-value=1.5e+02 Score=25.25 Aligned_cols=81 Identities=9% Similarity=0.065 Sum_probs=40.2
Q ss_pred HHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCC-cEEEEecC--CCHHHHHH-HHHcCCCEEEeC----CCCH
Q 008619 50 ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDL-PTIITSNI--HCLSTMMK-CIALGAVEFLRK----PLSE 121 (559)
Q Consensus 50 ~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Irdi-PVImLSa~--~d~e~v~k-Ai~~GA~DYLvK----Pis~ 121 (559)
..+|.+.|++ ...++-++++...-..+--.+.+.++.. .||++=.. .......+ ....-...++.| |++.
T Consensus 28 a~eA~~~L~~--~Gi~v~vi~~r~~~P~d~~~l~~~~~~~~~vvvvE~~~~G~l~~~i~~~~~~~~~~~i~~~~G~~~~~ 105 (118)
T 3ju3_A 28 ILDVIEDLKE--EGISANLLYLKMFSPFPTEFVKNVLSSANLVIDVESNYTAQAAQMIKLYTGIDIKNKILKYNGRHMTE 105 (118)
T ss_dssp HHHHHHHHHH--TTCCEEEEEECSSCSCCHHHHHHHHTTCSCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCBTTBCCCH
T ss_pred HHHHHHHHHH--CCCceEEEEECeEecCCHHHHHHHHcCCCEEEEEECCCCCcHHHHHHHHcCCCceeEEeeeCCeeCCH
Confidence 3445555555 4456666666655334544445555432 22222111 12222222 211112344443 8999
Q ss_pred HHHHHHHHHHH
Q 008619 122 DKLRNLWQHVV 132 (559)
Q Consensus 122 eeL~~iIq~vl 132 (559)
++|.+.+..++
T Consensus 106 ~ei~~~i~~~~ 116 (118)
T 3ju3_A 106 DEILKSAKEIL 116 (118)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988776
No 366
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=27.84 E-value=1.3e+02 Score=30.72 Aligned_cols=54 Identities=15% Similarity=0.174 Sum_probs=41.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCC--EEE-EECCHHHHHHHhhcCCCCeeEEEEec
Q 008619 18 LRVLLLDQDSSAAAELKFKLEAMDY--IVS-TFYNENEALSAFSDKPENFHVAIVEV 71 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy--~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv 71 (559)
-+|+.||-++...+..+..+...|. .+. .+.+..+.+..+......||+||+|.
T Consensus 241 ~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~dp 297 (396)
T 2as0_A 241 DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLDP 297 (396)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEECC
Confidence 3899999999999999988887765 344 67788887765543225799999985
No 367
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=27.77 E-value=1.5e+02 Score=28.06 Aligned_cols=113 Identities=14% Similarity=0.109 Sum_probs=62.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCC----EEE-EECCHHHH--------------HHH----h-hc-CCCCeeEEEEec
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAMDY----IVS-TFYNENEA--------------LSA----F-SD-KPENFHVAIVEV 71 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy----~V~-ta~~~~eA--------------L~~----L-re-~~~~pDLVIvDv 71 (559)
+-+|.-||.|+...+..+..|++.|+ +|. ...++.++ +.. + .. ....||+|++|-
T Consensus 51 ~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg 130 (202)
T 3cvo_A 51 GKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDG 130 (202)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECS
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhHHHHhhhhhccccCCCCCEEEEeC
Confidence 46899999999999999999998886 454 44443222 221 1 11 115799999997
Q ss_pred CCCCCCCHHHHHHHcCCCcEEEEec---CCCHHHHHHHHHc----C-CCEEEeCC--CCHHHHHHHHHH
Q 008619 72 TTSNTDGSFKFLETAKDLPTIITSN---IHCLSTMMKCIAL----G-AVEFLRKP--LSEDKLRNLWQH 130 (559)
Q Consensus 72 ~MPd~mdG~eLLe~IrdiPVImLSa---~~d~e~v~kAi~~----G-A~DYLvKP--is~eeL~~iIq~ 130 (559)
.-.. .--...+..++.--+|++-. ......+.+.++. | ..-|-++| ++.+.|..++..
T Consensus 131 ~k~~-~~~~~~l~~l~~GG~Iv~DNv~~r~~y~~v~~~~~~~~~~~~~a~f~~~p~~~~~~~~~~~~~~ 198 (202)
T 3cvo_A 131 RFRV-GCALATAFSITRPVTLLFDDYSQRRWQHQVEEFLGAPLMIGRLAAFQVEPQPIPPGSLMQLIRT 198 (202)
T ss_dssp SSHH-HHHHHHHHHCSSCEEEEETTGGGCSSGGGGHHHHCCCEEETTEEEEEECCCCCCGGGHHHHHHH
T ss_pred CCch-hHHHHHHHhcCCCeEEEEeCCcCCcchHHHHHHHhHHhhcCceEEEEeCCCCCCHHHHHHHHHH
Confidence 4221 01122445555444554422 2333344444432 2 34455544 456666665543
No 368
>3cni_A Putative ABC type-2 transporter; structural genomics, thermotoga MARI PSI-2, protein structure initiative; 2.30A {Thermotoga maritima MSB8}
Probab=27.76 E-value=1.3e+02 Score=26.50 Aligned_cols=55 Identities=20% Similarity=0.128 Sum_probs=35.8
Q ss_pred CCCcEEEEEeCCH-HHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCC
Q 008619 15 PKGLRVLLLDQDS-SAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSN 75 (559)
Q Consensus 15 p~glrVLIVDDD~-~~~~~L~~~L~~~gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd 75 (559)
++.+.|.|||.|. ...+.|.+.|. ..+.++ .+.+.++|.+.|++ ..++.+|. +|.
T Consensus 8 ~~~~~vaVvd~D~s~~s~~l~~~l~-~~~~~~~~~~s~~ea~~~l~~--g~~~~~l~---IP~ 64 (156)
T 3cni_A 8 TVGQKVAIVREDTGTIAELAEKALG-NMVDIVYAGSDLKEAEEAVKK--EKAPAIIV---IPK 64 (156)
T ss_dssp ---CEEEEEECCCSHHHHHHHHHHH-TSSEEEEEESCHHHHHHHHHH--HTCSEEEE---ECT
T ss_pred CCCCcEEEEECCCCHHHHHHHHHhc-CcEEEEecCCCHHHHHHHHHc--CCeeEEEE---ECc
Confidence 4568899998654 33355555665 444433 25799999999999 67777766 465
No 369
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=27.56 E-value=77 Score=33.10 Aligned_cols=74 Identities=14% Similarity=0.055 Sum_probs=50.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCE---EE-EECCHHHHHH-HhhcCCCCeeEEEEecCCCCCCCHHHHHH----HcCC
Q 008619 18 LRVLLLDQDSSAAAELKFKLEAMDYI---VS-TFYNENEALS-AFSDKPENFHVAIVEVTTSNTDGSFKFLE----TAKD 88 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~---V~-ta~~~~eAL~-~Lre~~~~pDLVIvDv~MPd~mdG~eLLe----~Ird 88 (559)
-+|..||-++...+.+++-++..|.. +. ...|+.+.+. .+ . ..||+|++|- ++ . ..++++ .++.
T Consensus 78 ~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~-~--~~fD~V~lDP--~g-~-~~~~l~~a~~~Lk~ 150 (392)
T 3axs_A 78 EKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEW-G--FGFDYVDLDP--FG-T-PVPFIESVALSMKR 150 (392)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCC-S--SCEEEEEECC--SS-C-CHHHHHHHHHHEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhh-C--CCCcEEEECC--Cc-C-HHHHHHHHHHHhCC
Confidence 47999999999999999999988763 44 5566666654 33 2 4699999998 33 2 223333 3443
Q ss_pred CcEEEEecCC
Q 008619 89 LPTIITSNIH 98 (559)
Q Consensus 89 iPVImLSa~~ 98 (559)
--+|++|...
T Consensus 151 gGll~~t~t~ 160 (392)
T 3axs_A 151 GGILSLTATD 160 (392)
T ss_dssp EEEEEEEECC
T ss_pred CCEEEEEecc
Confidence 3467777633
No 370
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=27.51 E-value=77 Score=27.98 Aligned_cols=72 Identities=11% Similarity=0.124 Sum_probs=43.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEEEEec
Q 008619 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSN 96 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVImLSa 96 (559)
++|||....--+-..|...|.+.|++|+.+....+.+..+.. ....++..|+. + --.+.+.+.++-+|+..+
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~--~~~~~~~~D~~--~---~~~~~~~~~~~d~vi~~a 75 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGP--RPAHVVVGDVL--Q---AADVDKTVAGQDAVIVLL 75 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSC--CCSEEEESCTT--S---HHHHHHHHTTCSEEEECC
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccccC--CceEEEEecCC--C---HHHHHHHHcCCCEEEECc
Confidence 689999998888888888888889998855433322221111 34555555553 2 223344455566665544
No 371
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=27.49 E-value=55 Score=32.06 Aligned_cols=61 Identities=13% Similarity=0.230 Sum_probs=39.4
Q ss_pred HHHHHhhcCCCCeeEEEEecCCCCC-CCHHHHHHHcC--CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCC
Q 008619 52 EALSAFSDKPENFHVAIVEVTTSNT-DGSFKFLETAK--DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLS 120 (559)
Q Consensus 52 eAL~~Lre~~~~pDLVIvDv~MPd~-mdG~eLLe~Ir--diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis 120 (559)
++++.|.+ ...|+|.+.....-. .+.+++++.+| ++|||+++...+ .+..|++.||+--+.
T Consensus 24 ~~~~~l~~--~GaD~ielG~S~Gvt~~~~~~~v~~ir~~~~Pivlm~y~~n------~i~~G~dg~iiPdLp 87 (240)
T 1viz_A 24 EQLEILCE--SGTDAVIIGGSDGVTEDNVLRMMSKVRRFLVPCVLEVSAIE------AIVPGFDLYFIPSVL 87 (240)
T ss_dssp HHHHHHHT--SCCSEEEECC----CHHHHHHHHHHHTTSSSCEEEECSCGG------GCCSCCSEEEEEEET
T ss_pred HHHHHHHH--cCCCEEEECCCCCCCHHHHHHHHHHhhCcCCCEEEecCccc------cccCCCCEEEEcccC
Confidence 34555555 457888887742110 12577888887 799999998742 237899999986443
No 372
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=27.44 E-value=89 Score=28.84 Aligned_cols=67 Identities=19% Similarity=0.216 Sum_probs=39.1
Q ss_pred HHHHHHHHHhhCCCEEEEECC---HH---HHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEEEEecCC
Q 008619 29 AAAELKFKLEAMDYIVSTFYN---EN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSNIH 98 (559)
Q Consensus 29 ~~~~L~~~L~~~gy~V~ta~~---~~---eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVImLSa~~ 98 (559)
+...+.+.++..||.+..+.. .+ +.++.+.. ..+|-||+--..+.....++.+.. ..+|+|++....
T Consensus 20 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~~~~~~~~~~~~-~~iPvV~~~~~~ 92 (272)
T 3o74_A 20 IAKQLEQGARARGYQLLIASSDDQPDSERQLQQLFRA--RRCDALFVASCLPPEDDSYRELQD-KGLPVIAIDRRL 92 (272)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH--TTCSEEEECCCCCSSCCHHHHHHH-TTCCEEEESSCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHH--cCCCEEEEecCccccHHHHHHHHH-cCCCEEEEccCC
Confidence 345566667778999885542 22 34556666 678988875433220223332222 389999887654
No 373
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Probab=27.44 E-value=1.4e+02 Score=31.03 Aligned_cols=85 Identities=12% Similarity=0.080 Sum_probs=53.8
Q ss_pred HHHHHHHHHhhCCCEEE--EE---CCHHHHHHHhhcCCCCeeEEEEecCCCCC--------------------CCHHHHH
Q 008619 29 AAAELKFKLEAMDYIVS--TF---YNENEALSAFSDKPENFHVAIVEVTTSNT--------------------DGSFKFL 83 (559)
Q Consensus 29 ~~~~L~~~L~~~gy~V~--ta---~~~~eAL~~Lre~~~~pDLVIvDv~MPd~--------------------mdG~eLL 83 (559)
+.+.|+.+-+..+.-|+ .+ .+.++|..+... .+|.|.++-+ .+. ....+.+
T Consensus 194 ~~~~I~~l~~~~~~PVivK~vg~g~s~e~A~~l~~a---Gad~I~V~g~-GGt~~a~ie~~r~~~~~~~~~~g~pt~~~L 269 (365)
T 3sr7_A 194 WKKHLSDYAKKLQLPFILKEVGFGMDVKTIQTAIDL---GVKTVDISGR-GGTSFAYIENRRGGNRSYLNQWGQTTAQVL 269 (365)
T ss_dssp HHHHHHHHHHHCCSCEEEEECSSCCCHHHHHHHHHH---TCCEEECCCB-C--------------CGGGTTCSCBHHHHH
T ss_pred HHHHHHHHHHhhCCCEEEEECCCCCCHHHHHHHHHc---CCCEEEEeCC-CCcccchhhccccccccccccccccHHHHH
Confidence 44556655555554444 34 567777666554 5788877543 110 1112333
Q ss_pred HHcC----CCcEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008619 84 ETAK----DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (559)
Q Consensus 84 e~Ir----diPVImLSa~~d~e~v~kAi~~GA~DYLvK 117 (559)
..++ ++|||.-..-.+...+.+++.+||+.+.+-
T Consensus 270 ~~v~~~~~~ipvia~GGI~~g~Dv~KaLalGAdaV~ig 307 (365)
T 3sr7_A 270 LNAQPLMDKVEILASGGIRHPLDIIKALVLGAKAVGLS 307 (365)
T ss_dssp HHHGGGTTTSEEEECSSCCSHHHHHHHHHHTCSEEEES
T ss_pred HHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 3332 689988888889999999999999998774
No 374
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=27.43 E-value=1.7e+02 Score=29.62 Aligned_cols=54 Identities=15% Similarity=0.136 Sum_probs=41.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCE-E-EEECCHHHHHHHhhcCCCCeeEEEEec
Q 008619 18 LRVLLLDQDSSAAAELKFKLEAMDYI-V-STFYNENEALSAFSDKPENFHVAIVEV 71 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~-V-~ta~~~~eAL~~Lre~~~~pDLVIvDv 71 (559)
.+|+.||-++...+..+.-+...|+. + ..+.+..+.+..+......||+||+|.
T Consensus 232 ~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dp 287 (382)
T 1wxx_A 232 REVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP 287 (382)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECC
Confidence 47999999999999999888876652 3 367788887776543225799999985
No 375
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=27.36 E-value=92 Score=30.87 Aligned_cols=133 Identities=11% Similarity=0.081 Sum_probs=71.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEE-CC-HHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEEE
Q 008619 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTF-YN-ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTII 93 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta-~~-~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVIm 93 (559)
+++||.||.--..-...+..+.+..+++++.+ .. .+.+-+.... .... . .- .+--++++. .++-+|+
T Consensus 4 ~~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~--~~~~------~-~~-~~~~~ll~~-~~~D~V~ 72 (330)
T 3e9m_A 4 DKIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKE--LAIP------V-AY-GSYEELCKD-ETIDIIY 72 (330)
T ss_dssp CCEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHH--TTCC------C-CB-SSHHHHHHC-TTCSEEE
T ss_pred CeEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHH--cCCC------c-ee-CCHHHHhcC-CCCCEEE
Confidence 45899999987665555555444457887744 32 2333333333 1110 0 01 233344442 2344444
Q ss_pred Ee--cCCCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHHHHHHhcCCCCccCCCcHHHHHHHHHHhh
Q 008619 94 TS--NIHCLSTMMKCIALGAVEFLRKPL--SEDKLRNLWQHVVHKAFNAGGSALSDSLKPVKESVVSMLHL 160 (559)
Q Consensus 94 LS--a~~d~e~v~kAi~~GA~DYLvKPi--s~eeL~~iIq~vlrr~~~~~~~~~s~~Lt~re~eVl~li~~ 160 (559)
++ ...-.+.+..|+++|..=|+-||+ +.++....++.+-+... ........++.+.-..+.+++..
T Consensus 73 i~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~e~~~l~~~a~~~g~-~~~v~~~~r~~p~~~~~k~~i~~ 142 (330)
T 3e9m_A 73 IPTYNQGHYSAAKLALSQGKPVLLEKPFTLNAAEAEELFAIAQEQGV-FLMEAQKSVFLPITQKVKATIQE 142 (330)
T ss_dssp ECCCGGGHHHHHHHHHHTTCCEEECSSCCSSHHHHHHHHHHHHHTTC-CEEECCSGGGCHHHHHHHHHHHT
T ss_pred EcCCCHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCC-eEEEEEhhhhCHHHHHHHHHHhC
Confidence 43 344567788999999999999996 56777665554332211 00111133455666666666654
No 376
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*
Probab=27.31 E-value=2.4e+02 Score=29.19 Aligned_cols=114 Identities=9% Similarity=0.052 Sum_probs=62.2
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcC--CCC-eeEEEEecCCCCCCCHHHHHHHcCCC
Q 008619 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDK--PEN-FHVAIVEVTTSNTDGSFKFLETAKDL 89 (559)
Q Consensus 14 ~p~glrVLIVDDD~~~~~~L~~~L~~~gy~V~-ta~~~~eAL~~Lre~--~~~-pDLVIvDv~MPd~mdG~eLLe~Irdi 89 (559)
.++.+||.||.--..-...+..+...-+++++ .|....+..+.+.+. ... ++.-+.+- .. .+--++++. .++
T Consensus 17 ~~~~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~--~~-~~~~~ll~~-~~v 92 (444)
T 2ixa_A 17 NPKKVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGN--GN-DDYKNMLKD-KNI 92 (444)
T ss_dssp --CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECS--ST-TTHHHHTTC-TTC
T ss_pred CCCCceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceecc--CC-CCHHHHhcC-CCC
Confidence 34568999999876666555544444478877 444333333332210 011 11222211 11 122233321 145
Q ss_pred cEEEEecC--CCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHH
Q 008619 90 PTIITSNI--HCLSTMMKCIALGAVEFLRKPL--SEDKLRNLWQHV 131 (559)
Q Consensus 90 PVImLSa~--~d~e~v~kAi~~GA~DYLvKPi--s~eeL~~iIq~v 131 (559)
-+|+++.. .-.+.+.+|+++|..=|+-||+ +.++...+++.+
T Consensus 93 D~V~i~tp~~~h~~~~~~al~aGkhV~~EKP~a~~~~ea~~l~~~a 138 (444)
T 2ixa_A 93 DAVFVSSPWEWHHEHGVAAMKAGKIVGMEVSGAITLEECWDYVKVS 138 (444)
T ss_dssp CEEEECCCGGGHHHHHHHHHHTTCEEEECCCCCSSHHHHHHHHHHH
T ss_pred CEEEEcCCcHHHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHH
Confidence 55555543 3467789999999999999997 477776665544
No 377
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}
Probab=27.23 E-value=86 Score=31.12 Aligned_cols=132 Identities=10% Similarity=0.128 Sum_probs=67.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCH------HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCc
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNE------NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLP 90 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~------~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiP 90 (559)
++||.||.--......+.. | ..+++++.+.+. +.+-+...+ ..++.-. - .+--++++.- ++-
T Consensus 2 ~~rvgiiG~G~~~~~~~~~-l-~~~~~lvav~d~~~~~~~~~~~~~~~~--~~~~~~~------~-~~~~~ll~~~-~vD 69 (337)
T 3ip3_A 2 SLKICVIGSSGHFRYALEG-L-DEECSITGIAPGVPEEDLSKLEKAISE--MNIKPKK------Y-NNWWEMLEKE-KPD 69 (337)
T ss_dssp CEEEEEECSSSCHHHHHTT-C-CTTEEEEEEECSSTTCCCHHHHHHHHT--TTCCCEE------C-SSHHHHHHHH-CCS
T ss_pred ceEEEEEccchhHHHHHHh-c-CCCcEEEEEecCCchhhHHHHHHHHHH--cCCCCcc------c-CCHHHHhcCC-CCC
Confidence 4788888864333333332 3 446777743321 233333333 2221000 0 2334444432 344
Q ss_pred EEEEecC--CCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHHHHHHhc-CCCCccCCCcHHHHHHHHHHhh
Q 008619 91 TIITSNI--HCLSTMMKCIALGAVEFLRKPL--SEDKLRNLWQHVVHKAFNA-GGSALSDSLKPVKESVVSMLHL 160 (559)
Q Consensus 91 VImLSa~--~d~e~v~kAi~~GA~DYLvKPi--s~eeL~~iIq~vlrr~~~~-~~~~~s~~Lt~re~eVl~li~~ 160 (559)
+|+++.. .-.+.+.+|+++|..=|+-||+ +.++....++.+-+..... .......++.+.-..+.+++..
T Consensus 70 ~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~~~v~~~~R~~p~~~~~k~~i~~ 144 (337)
T 3ip3_A 70 ILVINTVFSLNGKILLEALERKIHAFVEKPIATTFEDLEKIRSVYQKVRNEVFFTAMFGIRYRPHFLTAKKLVSE 144 (337)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTTTCCEEECCGGGGSHHHHHHHHHHHH
T ss_pred EEEEeCCcchHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEecccccCCHHHHHHHHHHhc
Confidence 4444433 2456789999999999999998 4567777665544332110 1111234556666666666654
No 378
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=27.09 E-value=1.4e+02 Score=28.07 Aligned_cols=63 Identities=10% Similarity=0.036 Sum_probs=39.4
Q ss_pred HHHHHHHHHhhCCCEEEEECC------HHH---HHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC--CCcEEEEecC
Q 008619 29 AAAELKFKLEAMDYIVSTFYN------ENE---ALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (559)
Q Consensus 29 ~~~~L~~~L~~~gy~V~ta~~------~~e---AL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir--diPVImLSa~ 97 (559)
+...++..++..||.+..+.. ..+ .++.+.. ..+|-||+--... + -+.++.+. .+|||++...
T Consensus 26 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~---~-~~~~~~l~~~~iPvV~~~~~ 99 (290)
T 2rgy_A 26 ILKQTDLELRAVHRHVVVATGCGESTPREQALEAVRFLIG--RDCDGVVVISHDL---H-DEDLDELHRMHPKMVFLNRA 99 (290)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHHHH--TTCSEEEECCSSS---C-HHHHHHHHHHCSSEEEESSC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCchhhhhhHHHHHHHHHh--cCccEEEEecCCC---C-HHHHHHHhhcCCCEEEEccc
Confidence 445566677788999886542 123 6677766 6799888743222 2 23444443 7999988654
No 379
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=27.00 E-value=1.5e+02 Score=27.89 Aligned_cols=63 Identities=13% Similarity=0.046 Sum_probs=34.1
Q ss_pred HHHHHHHHHhhCCCEEEEE-CCH------HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHc--CCCcEEEEecC
Q 008619 29 AAAELKFKLEAMDYIVSTF-YNE------NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA--KDLPTIITSNI 97 (559)
Q Consensus 29 ~~~~L~~~L~~~gy~V~ta-~~~------~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~I--rdiPVImLSa~ 97 (559)
+...++..++..||.+..+ ... .++++.+.. ..+|-||+--.... . +.++.+ ..+|+|++...
T Consensus 26 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiI~~~~~~~-~---~~~~~l~~~~iPvV~~~~~ 97 (290)
T 3clk_A 26 ILDGIQEEAHKNGYNLIIVYSGSADPEEQKHALLTAIE--RPVMGILLLSIALT-D---DNLQLLQSSDVPYCFLSMG 97 (290)
T ss_dssp HHHHHHHHHHTTTCEEEEEC----------CHHHHHHS--SCCSEEEEESCC--------CHHHHHCC--CEEEESCC
T ss_pred HHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHHHHh--cCCCEEEEecccCC-H---HHHHHHHhCCCCEEEEcCC
Confidence 4455667777889998866 322 134666666 57897776433222 1 233334 37999988553
No 380
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Probab=26.98 E-value=3e+02 Score=26.77 Aligned_cols=102 Identities=15% Similarity=0.190 Sum_probs=56.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHh-hCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEEE
Q 008619 16 KGLRVLLLDQDSSAAAELKFKLE-AMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTII 93 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~-~~gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVIm 93 (559)
++++|.||.--..-...+...|. ..+++++ .+....+..+.+.+ .+.+ +- .+.++.+ ..++-+|+
T Consensus 4 ~~~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~---~~g~-------~~-~~~~~~l--~~~~D~V~ 70 (319)
T 1tlt_A 4 KKLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICE---SWRI-------PY-ADSLSSL--AASCDAVF 70 (319)
T ss_dssp -CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHH---HHTC-------CB-CSSHHHH--HTTCSEEE
T ss_pred CcceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHH---HcCC-------Cc-cCcHHHh--hcCCCEEE
Confidence 35899999986555542334444 3478877 44432222222222 0111 01 1223333 23566666
Q ss_pred EecCCC--HHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHH
Q 008619 94 TSNIHC--LSTMMKCIALGAVEFLRKPL--SEDKLRNLWQH 130 (559)
Q Consensus 94 LSa~~d--~e~v~kAi~~GA~DYLvKPi--s~eeL~~iIq~ 130 (559)
++.... .+.+..++++|..=|+-||+ +.++...+++.
T Consensus 71 i~tp~~~h~~~~~~al~~G~~v~~eKP~~~~~~~~~~l~~~ 111 (319)
T 1tlt_A 71 VHSSTASHFDVVSTLLNAGVHVCVDKPLAENLRDAERLVEL 111 (319)
T ss_dssp ECSCTTHHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHH
T ss_pred EeCCchhHHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHH
Confidence 665443 46788899999988889997 56666655443
No 381
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}
Probab=26.90 E-value=90 Score=30.16 Aligned_cols=74 Identities=8% Similarity=0.045 Sum_probs=45.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEEEEe
Q 008619 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITS 95 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVImLS 95 (559)
.+|+|||....-.+-..|...|...||+|+.+.........+.. ....++..|+. + --.+.+.+..+-+|+-.
T Consensus 12 ~~M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~--~~~~~~~~Dl~--d---~~~~~~~~~~~d~vih~ 84 (342)
T 2x4g_A 12 AHVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAY--LEPECRVAEML--D---HAGLERALRGLDGVIFS 84 (342)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGGG--GCCEEEECCTT--C---HHHHHHHTTTCSEEEEC
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhcc--CCeEEEEecCC--C---HHHHHHHHcCCCEEEEC
Confidence 34699999998888888888888889999865433222222332 24556666653 2 22334445566666654
Q ss_pred c
Q 008619 96 N 96 (559)
Q Consensus 96 a 96 (559)
+
T Consensus 85 a 85 (342)
T 2x4g_A 85 A 85 (342)
T ss_dssp -
T ss_pred C
Confidence 4
No 382
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=26.82 E-value=1.7e+02 Score=29.71 Aligned_cols=66 Identities=8% Similarity=-0.017 Sum_probs=47.1
Q ss_pred EEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEEEEecCCCHHHHHHHHHcCCCEE
Q 008619 44 VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSNIHCLSTMMKCIALGAVEF 114 (559)
Q Consensus 44 V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVImLSa~~d~e~v~kAi~~GA~DY 114 (559)
.+.+.+.+++.+.+.. ..|+|++|-.-++ +--+.++.+..-..|..|+.-+.+.+.+..+.|++.+
T Consensus 213 eVEvdtlde~~eAl~a---GaD~I~LDn~~~~--~l~~av~~i~~~v~ieaSGGI~~~~i~~~a~tGVD~i 278 (298)
T 3gnn_A 213 QIEVETLDQLRTALAH---GARSVLLDNFTLD--MMRDAVRVTEGRAVLEVSGGVNFDTVRAIAETGVDRI 278 (298)
T ss_dssp EEEESSHHHHHHHHHT---TCEEEEEESCCHH--HHHHHHHHHTTSEEEEEESSCSTTTHHHHHHTTCSEE
T ss_pred EEEeCCHHHHHHHHHc---CCCEEEECCCCHH--HHHHHHHHhCCCCeEEEEcCCCHHHHHHHHHcCCCEE
Confidence 3468999998888876 4899999974333 2223344444445567888889999999999999655
No 383
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=26.76 E-value=1.2e+02 Score=28.68 Aligned_cols=64 Identities=8% Similarity=0.078 Sum_probs=38.1
Q ss_pred HHHHHHHHHhhCCCEEEEEC--CHHH---HHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC--CCcEEEEec
Q 008619 29 AAAELKFKLEAMDYIVSTFY--NENE---ALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (559)
Q Consensus 29 ~~~~L~~~L~~~gy~V~ta~--~~~e---AL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir--diPVImLSa 96 (559)
+...++..++..||.+..+. +.++ .++.+.. ..+|-||+.-.-++ .....++.+. .+|||++..
T Consensus 20 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~i~~l~~--~~vdgiii~~~~~~--~~~~~~~~~~~~~iPvV~~~~ 90 (306)
T 8abp_A 20 EWKFADKAGKDLGFEVIKIAVPDGEKTLNAIDSLAA--SGAKGFVICTPDPK--LGSAIVAKARGYDMKVIAVDD 90 (306)
T ss_dssp HHHHHHHHHHHHTEEEEEEECCSHHHHHHHHHHHHH--TTCCEEEEECSCGG--GHHHHHHHHHHTTCEEEEESS
T ss_pred HHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHHHH--cCCCEEEEeCCCch--hhHHHHHHHHHCCCcEEEeCC
Confidence 34455666667799887544 3333 4445555 56998887553222 2233455553 799998874
No 384
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=26.71 E-value=1.1e+02 Score=29.33 Aligned_cols=62 Identities=18% Similarity=0.133 Sum_probs=37.3
Q ss_pred HHHHHHHHHhhCCC------EEEEECC---H---HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHH-HHHcCCCcEEEEe
Q 008619 29 AAAELKFKLEAMDY------IVSTFYN---E---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKF-LETAKDLPTIITS 95 (559)
Q Consensus 29 ~~~~L~~~L~~~gy------~V~ta~~---~---~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eL-Le~IrdiPVImLS 95 (559)
+.+.++..|...|| .+..+.+ . .+.++.+.+ .++|.||+-- . ..... ...-.++|||++.
T Consensus 25 ~~~gi~~~l~~~Gy~~g~~v~l~~~~~~~~~~~~~~~~~~l~~--~~vDgII~~~---~--~~~~~~~~~~~~iPvV~~~ 97 (302)
T 2qh8_A 25 TRQGLLDGLKAKGYEEGKNLEFDYKTAQGNPAIAVQIARQFVG--ENPDVLVGIA---T--PTAQALVSATKTIPIVFTA 97 (302)
T ss_dssp HHHHHHHHHHHTTCCBTTTEEEEEEECTTCHHHHHHHHHHHHH--TCCSEEEEES---H--HHHHHHHHHCSSSCEEEEE
T ss_pred HHHHHHHHHHHcCCCCCCceEEEEecCCCCHHHHHHHHHHHHh--CCCCEEEECC---h--HHHHHHHhcCCCcCEEEEe
Confidence 44566777788899 5554432 2 245666666 6899988731 1 22222 2323489999886
Q ss_pred cC
Q 008619 96 NI 97 (559)
Q Consensus 96 a~ 97 (559)
..
T Consensus 98 ~~ 99 (302)
T 2qh8_A 98 VT 99 (302)
T ss_dssp ES
T ss_pred cC
Confidence 43
No 385
>3plv_C 66 kDa U4/U6.U5 small nuclear ribonucleoprotein C; ubiquitin-like, peptide binding protein; 1.90A {Saccharomyces cerevisiae}
Probab=26.70 E-value=22 Score=22.47 Aligned_cols=7 Identities=57% Similarity=0.634 Sum_probs=5.2
Q ss_pred CCCCCCc
Q 008619 527 LGLKPPS 533 (559)
Q Consensus 527 ~glk~p~ 533 (559)
|||||++
T Consensus 14 lGLkplp 20 (21)
T 3plv_C 14 LGLKLIP 20 (26)
T ss_dssp TTCCCCC
T ss_pred cCCCCCC
Confidence 6888865
No 386
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=26.66 E-value=93 Score=30.93 Aligned_cols=55 Identities=5% Similarity=-0.059 Sum_probs=33.2
Q ss_pred HHHHHHHcC-CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHHH
Q 008619 79 SFKFLETAK-DLPTIITSNIHCLSTMMKCIALGAVEFLRKPL--SEDKLRNLWQHVVH 133 (559)
Q Consensus 79 G~eLLe~Ir-diPVImLSa~~d~e~v~kAi~~GA~DYLvKPi--s~eeL~~iIq~vlr 133 (559)
+..+++.+. .+|+|++-...+.....+.+..+-.++++.+- +.++|...+..++.
T Consensus 310 ~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~ai~~ll~ 367 (398)
T 4fzr_A 310 HGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVEVPWEQAGVESVLAACARIRD 367 (398)
T ss_dssp HHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHTTSEEECC-------CHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEecCCchhHHHHHHHHHHcCCEEecCcccCCHHHHHHHHHHHHh
Confidence 345666664 89999886555555555555555556776654 67888888887774
No 387
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=26.59 E-value=45 Score=32.02 Aligned_cols=53 Identities=9% Similarity=0.083 Sum_probs=35.8
Q ss_pred cEEEEEeCCHH--------HHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecC
Q 008619 18 LRVLLLDQDSS--------AAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVT 72 (559)
Q Consensus 18 lrVLIVDDD~~--------~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~ 72 (559)
++|+|+.+... ....+...|.+.||+|+.+......+..+.. ..+|+|+.-++
T Consensus 3 ~~i~il~gg~s~e~~~s~~~~~~l~~al~~~G~~v~~~~~~~~~~~~~~~--~~~d~v~~~~~ 63 (306)
T 1iow_A 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKS--MGFQKVFIALH 63 (306)
T ss_dssp CEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCGGGTTT--TTEEEEEECCC
T ss_pred cEEEEEeCCCCccceEcHHhHHHHHHHHHHCCCeEEEEecCchHHHHhhc--cCCCEEEEcCC
Confidence 68999886541 3456778888899999877654322333444 57999987664
No 388
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=26.55 E-value=2.9e+02 Score=26.89 Aligned_cols=73 Identities=8% Similarity=0.027 Sum_probs=44.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHH----HH---HHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC--
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNEN----EA---LSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-- 87 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~----eA---L~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-- 87 (559)
+++|||..-.-.+-..|...|.+.|++|+.+.... +. +..+.. ....++..|+. + --.+.+.+.
T Consensus 10 ~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~--~~v~~~~~Dl~--d---~~~l~~~~~~~ 82 (346)
T 3i6i_A 10 KGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALED--KGAIIVYGLIN--E---QEAMEKILKEH 82 (346)
T ss_dssp -CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHH--TTCEEEECCTT--C---HHHHHHHHHHT
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHh--CCcEEEEeecC--C---HHHHHHHHhhC
Confidence 46899999988888888888888899888553311 22 233444 45677777664 2 223333344
Q ss_pred CCcEEEEec
Q 008619 88 DLPTIITSN 96 (559)
Q Consensus 88 diPVImLSa 96 (559)
.+-+|+..+
T Consensus 83 ~~d~Vi~~a 91 (346)
T 3i6i_A 83 EIDIVVSTV 91 (346)
T ss_dssp TCCEEEECC
T ss_pred CCCEEEECC
Confidence 455555443
No 389
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=26.51 E-value=63 Score=32.91 Aligned_cols=69 Identities=9% Similarity=0.117 Sum_probs=48.0
Q ss_pred CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHc-------C-CCcEEEEecCCCHHHHHHHHHcCCCEEE-eCCC
Q 008619 49 NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA-------K-DLPTIITSNIHCLSTMMKCIALGAVEFL-RKPL 119 (559)
Q Consensus 49 ~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~I-------r-diPVImLSa~~d~e~v~kAi~~GA~DYL-vKPi 119 (559)
+.++..+.+.. .|++++=.. .+ .-|..+++.+ . .+|||.... +..|.++++ ..|-
T Consensus 274 ~~~~l~~~~~~----adv~v~ps~-~E-~~~~~~lEAm~Kl~eYla~G~PVIas~~----------v~~~~~G~l~v~~~ 337 (406)
T 2hy7_A 274 KHAQTIGYIKH----ARFGIAPYA-SE-QVPVYLADSSMKLLQYDFFGLPAVCPNA----------VVGPYKSRFGYTPG 337 (406)
T ss_dssp CHHHHHHHHHT----CSEEECCBS-CS-CCCTTHHHHCHHHHHHHHHTCCEEEEGG----------GTCSCSSEEEECTT
T ss_pred CHHHHHHHHHh----cCEEEECCC-cc-cCchHHHHHHHHHHHHhhCCCcEEEehh----------cccCcceEEEeCCC
Confidence 34566666655 577776443 23 3455566654 4 899986432 567888999 9999
Q ss_pred CHHHHHHHHHHHHH
Q 008619 120 SEDKLRNLWQHVVH 133 (559)
Q Consensus 120 s~eeL~~iIq~vlr 133 (559)
+.++|.++|..++.
T Consensus 338 d~~~la~ai~~ll~ 351 (406)
T 2hy7_A 338 NADSVIAAITQALE 351 (406)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999988774
No 390
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=26.38 E-value=3.5e+02 Score=24.23 Aligned_cols=74 Identities=11% Similarity=0.078 Sum_probs=44.9
Q ss_pred EEEEEeCCHHHHHHHHHHHh-hCCCEEEEECCHHH-HHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEEEEec
Q 008619 19 RVLLLDQDSSAAAELKFKLE-AMDYIVSTFYNENE-ALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSN 96 (559)
Q Consensus 19 rVLIVDDD~~~~~~L~~~L~-~~gy~V~ta~~~~e-AL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVImLSa 96 (559)
+|||..-.--+-..+...|. ..|++|+.+....+ .++.+........++..|+. + --++.+.+..+-+|+..+
T Consensus 7 ~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~--d---~~~~~~~~~~~d~vv~~a 81 (221)
T 3r6d_A 7 YITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQ--N---PGXLEQAVTNAEVVFVGA 81 (221)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTT--C---HHHHHHHHTTCSEEEESC
T ss_pred EEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCC--C---HHHHHHHHcCCCEEEEcC
Confidence 48999988888888888877 78999985544344 44444211144566666663 2 223334445666666554
Q ss_pred C
Q 008619 97 I 97 (559)
Q Consensus 97 ~ 97 (559)
-
T Consensus 82 g 82 (221)
T 3r6d_A 82 M 82 (221)
T ss_dssp C
T ss_pred C
Confidence 3
No 391
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=26.36 E-value=85 Score=28.95 Aligned_cols=79 Identities=15% Similarity=0.140 Sum_probs=45.4
Q ss_pred HHHHHhhCCCEEE-EE--CCHHHHHHHhhcCCCCeeEEEEecCCCCCCCH-------HHHHHHcC--------CCcEEEE
Q 008619 33 LKFKLEAMDYIVS-TF--YNENEALSAFSDKPENFHVAIVEVTTSNTDGS-------FKFLETAK--------DLPTIIT 94 (559)
Q Consensus 33 L~~~L~~~gy~V~-ta--~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG-------~eLLe~Ir--------diPVImL 94 (559)
+.+.++..|..+. .+ .+..++++.+.. ..|.|+++...++ .+| ++.++.++ ++||++
T Consensus 101 ~~~~~~~~g~~i~~~~~~~t~~e~~~~~~~---~~d~vl~~~~~~g-~~g~~~~~~~~~~i~~~~~~~~~~~~~~~i~v- 175 (220)
T 2fli_A 101 ALQKIKAAGMKAGVVINPGTPATALEPLLD---LVDQVLIMTVNPG-FGGQAFIPECLEKVATVAKWRDEKGLSFDIEV- 175 (220)
T ss_dssp HHHHHHHTTSEEEEEECTTSCGGGGGGGTT---TCSEEEEESSCTT-CSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEE-
T ss_pred HHHHHHHcCCcEEEEEcCCCCHHHHHHHHh---hCCEEEEEEECCC-CcccccCHHHHHHHHHHHHHHHhcCCCceEEE-
Confidence 3444444565544 34 333444444433 3789988776665 444 23233332 566654
Q ss_pred ecCCCHHHHHHHHHcCCCEEEe
Q 008619 95 SNIHCLSTMMKCIALGAVEFLR 116 (559)
Q Consensus 95 Sa~~d~e~v~kAi~~GA~DYLv 116 (559)
+.--..+.+.+++++||+.+++
T Consensus 176 ~GGI~~~~~~~~~~~Gad~vvv 197 (220)
T 2fli_A 176 DGGVDNKTIRACYEAGANVFVA 197 (220)
T ss_dssp ESSCCTTTHHHHHHHTCCEEEE
T ss_pred ECcCCHHHHHHHHHcCCCEEEE
Confidence 4444467777888899998876
No 392
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=26.26 E-value=1.8e+02 Score=27.81 Aligned_cols=69 Identities=4% Similarity=0.088 Sum_probs=41.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEEEEec
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSN 96 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVImLSa 96 (559)
+++|||....-.+-..|...|.+.||+|+.+........ +. .+.++..|+. ++ .+.+.+..+-+|+-.+
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~----~~~~~~~Dl~-~~-----~~~~~~~~~d~Vih~a 70 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKA-IN----DYEYRVSDYT-LE-----DLINQLNDVDAVVHLA 70 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC----------CCEEEECCCC-HH-----HHHHHTTTCSEEEECC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCccc-CC----ceEEEEcccc-HH-----HHHHhhcCCCEEEEcc
Confidence 468999998888888888888888999885543222222 22 3566666664 33 2223334555555443
No 393
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=26.25 E-value=1.4e+02 Score=22.28 Aligned_cols=46 Identities=20% Similarity=0.245 Sum_probs=33.7
Q ss_pred ceecCHHHHHHHHHHHHHhCCCCCCChHHHhhcCCCCCCHHHHHHhhhhh
Q 008619 319 KVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKY 368 (559)
Q Consensus 319 r~~Wt~~lh~~Fv~av~~lg~~~a~pk~il~~m~v~~lt~~~v~shlQky 368 (559)
|-.||+|=..+++++|.++|..+ =+.|-+.| +|=|-.+++.+-++|
T Consensus 8 k~~Wt~eED~~L~~~v~~~G~~~--W~~Ia~~~--~~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 8 KVKWTHEEDEQLRALVRQFGQQD--WKFLASHF--PNRTDQQCQYRWLRV 53 (60)
T ss_dssp CSCCCHHHHHHHHHHHHHTCTTC--HHHHHHHC--SSSCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCCC--HHHHHHHc--cCCCHHHHHHHHHHH
Confidence 55899999999999999999422 24455554 577877877665544
No 394
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=26.22 E-value=1.2e+02 Score=28.95 Aligned_cols=62 Identities=15% Similarity=0.138 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhhCCC---EEE--EEC---CH---HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHH-HHcCCCcEEEEe
Q 008619 28 SAAAELKFKLEAMDY---IVS--TFY---NE---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFL-ETAKDLPTIITS 95 (559)
Q Consensus 28 ~~~~~L~~~L~~~gy---~V~--ta~---~~---~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLL-e~IrdiPVImLS 95 (559)
.+.+.+++.|...|| .+. .+. +. .+.++.+.+ ..+|.||+-- . .....+ ....++|||++.
T Consensus 18 ~i~~gi~~~l~~~gy~g~~v~l~~~~~~~~~~~~~~~~~~l~~--~~vDgII~~~---~--~~~~~~~~~~~~iPvV~~~ 90 (295)
T 3lft_A 18 LIYKGIQDGLAEEGYKDDQVKIDFMNSEGDQSKVATMSKQLVA--NGNDLVVGIA---T--PAAQGLASATKDLPVIMAA 90 (295)
T ss_dssp HHHHHHHHHHHHTTCCGGGEEEEEEECTTCHHHHHHHHHHHTT--SSCSEEEEES---H--HHHHHHHHHCSSSCEEEES
T ss_pred HHHHHHHHHHHHcCCCCCceEEEEecCCCCHHHHHHHHHHHHh--cCCCEEEECC---c--HHHHHHHHcCCCCCEEEEe
Confidence 345667778888899 533 333 22 345556666 7899988731 2 223223 233589999886
Q ss_pred c
Q 008619 96 N 96 (559)
Q Consensus 96 a 96 (559)
.
T Consensus 91 ~ 91 (295)
T 3lft_A 91 I 91 (295)
T ss_dssp C
T ss_pred c
Confidence 4
No 395
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=26.20 E-value=1.1e+02 Score=25.97 Aligned_cols=54 Identities=19% Similarity=0.170 Sum_probs=37.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEec
Q 008619 18 LRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEV 71 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv 71 (559)
.+|..||-++...+..+..+...+..+. ...+..+.+..+......||+|+++.
T Consensus 64 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 64 WEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 3588999999999888888876654444 45566665554443224799999984
No 396
>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A
Probab=26.13 E-value=2.2e+02 Score=28.33 Aligned_cols=105 Identities=13% Similarity=0.101 Sum_probs=56.6
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECC-HHHHHHHhhcCCCCe--eEEEEecCCCCCCCHHHHHHHcCCC
Q 008619 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYN-ENEALSAFSDKPENF--HVAIVEVTTSNTDGSFKFLETAKDL 89 (559)
Q Consensus 14 ~p~glrVLIVDDD~~~~~~L~~~L~~~gy~V~-ta~~-~~eAL~~Lre~~~~p--DLVIvDv~MPd~mdG~eLLe~Irdi 89 (559)
++++++|.||.--..-...+..+....+++++ .+.. .+.+-+.... ..+ +.... .+--++++. .++
T Consensus 3 ~~~~~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~--~~~~~~~~~~-------~~~~~ll~~-~~~ 72 (362)
T 1ydw_A 3 TETQIRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATA--NNYPESTKIH-------GSYESLLED-PEI 72 (362)
T ss_dssp ---CEEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHH--TTCCTTCEEE-------SSHHHHHHC-TTC
T ss_pred CCCceEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHH--hCCCCCCeee-------CCHHHHhcC-CCC
Confidence 45568999998766555555544443477776 4443 3333333333 221 11111 122334432 134
Q ss_pred cEEEEecC--CCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHH
Q 008619 90 PTIITSNI--HCLSTMMKCIALGAVEFLRKPL--SEDKLRNLW 128 (559)
Q Consensus 90 PVImLSa~--~d~e~v~kAi~~GA~DYLvKPi--s~eeL~~iI 128 (559)
-+|+++.. .-.+.+..|+++|..=|+-||+ +.++....+
T Consensus 73 D~V~i~tp~~~h~~~~~~al~aGk~V~~EKP~a~~~~e~~~l~ 115 (362)
T 1ydw_A 73 DALYVPLPTSLHVEWAIKAAEKGKHILLEKPVAMNVTEFDKIV 115 (362)
T ss_dssp CEEEECCCGGGHHHHHHHHHTTTCEEEECSSCSSSHHHHHHHH
T ss_pred CEEEEcCChHHHHHHHHHHHHCCCeEEEecCCcCCHHHHHHHH
Confidence 45555443 3457788999999988999997 455555543
No 397
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=26.13 E-value=77 Score=35.40 Aligned_cols=72 Identities=14% Similarity=0.282 Sum_probs=46.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEe--cCCCCCCCH-------HHHHHHc
Q 008619 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVE--VTTSNTDGS-------FKFLETA 86 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvD--v~MPd~mdG-------~eLLe~I 86 (559)
.+.+|+|||........|...|+..|+.+..+..... ... ..+|.||+- ..-+. ..+ .++++.+
T Consensus 445 ~Gk~IlviD~gdsf~~~l~~~l~~~G~~v~Vv~~d~~----~~~--~~~DgIIlsGGPg~p~-d~~~p~i~~~~~lI~~a 517 (645)
T 3r75_A 445 SGCRALIVDAEDHFTAMIAQQLSSLGLATEVCGVHDA----VDL--ARYDVVVMGPGPGDPS-DAGDPRIARLYAWLRHL 517 (645)
T ss_dssp TTCEEEEEESSCTHHHHHHHHHHHTTCEEEEEETTCC----CCG--GGCSEEEECCCSSCTT-CTTSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCccHHHHHHHHHHHCCCEEEEEECCCc----ccc--cCCCEEEECCCCCChh-hhhhhhHHHHHHHHHHH
Confidence 4679999999988889999999999988775533221 112 357888872 22222 222 2344443
Q ss_pred --CCCcEEEE
Q 008619 87 --KDLPTIIT 94 (559)
Q Consensus 87 --rdiPVImL 94 (559)
.++||+-+
T Consensus 518 ~~~~iPiLGI 527 (645)
T 3r75_A 518 IDEGKPFMAV 527 (645)
T ss_dssp HHHTCCEEEE
T ss_pred HHCCCCEEEE
Confidence 27898765
No 398
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=26.04 E-value=1.6e+02 Score=27.27 Aligned_cols=63 Identities=11% Similarity=0.141 Sum_probs=37.3
Q ss_pred HHHHHHHHHhhCCCEEEEEC---CH---HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC--CCcEEEEecC
Q 008619 29 AAAELKFKLEAMDYIVSTFY---NE---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (559)
Q Consensus 29 ~~~~L~~~L~~~gy~V~ta~---~~---~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir--diPVImLSa~ 97 (559)
+...++..++..||.+..+. +. .+.++.+.. ..+|-||+--.... . +.++.+. .+|+|++...
T Consensus 21 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgii~~~~~~~---~-~~~~~l~~~~iPvV~~~~~ 91 (275)
T 3d8u_A 21 FLPSFQQALNKAGYQLLLGYSDYSIEQEEKLLSTFLE--SRPAGVVLFGSEHS---Q-RTHQLLEASNTPVLEIAEL 91 (275)
T ss_dssp HHHHHHHHHHHTSCEECCEECTTCHHHHHHHHHHHHT--SCCCCEEEESSCCC---H-HHHHHHHHHTCCEEEESSS
T ss_pred HHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHh--cCCCEEEEeCCCCC---H-HHHHHHHhCCCCEEEEeec
Confidence 44556777778899877443 22 234566666 67886665432222 2 3444443 7999988653
No 399
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=26.00 E-value=1.4e+02 Score=28.07 Aligned_cols=66 Identities=6% Similarity=0.138 Sum_probs=40.2
Q ss_pred HHHHHHHHHhhCCC-EEEEECC---HH---HHHHHhhcCCCCeeEEEEecCCCCCCCH-HHHHHHcC--CCcEEEEecCC
Q 008619 29 AAAELKFKLEAMDY-IVSTFYN---EN---EALSAFSDKPENFHVAIVEVTTSNTDGS-FKFLETAK--DLPTIITSNIH 98 (559)
Q Consensus 29 ~~~~L~~~L~~~gy-~V~ta~~---~~---eAL~~Lre~~~~pDLVIvDv~MPd~mdG-~eLLe~Ir--diPVImLSa~~ 98 (559)
+...++..++..|| ++..+.. .. +.++.+.. ..+|-||+-.. + .+. .+.++.+. .+|||++....
T Consensus 20 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~vdgiii~~~--~-~~~~~~~~~~~~~~~iPvV~~~~~~ 94 (309)
T 2fvy_A 20 VRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLA--KGVKALAINLV--D-PAAAGTVIEKARGQNVPVVFFNKEP 94 (309)
T ss_dssp HHHHHHHHHHTCTTEEEEEEECTTCHHHHHHHHHHHHH--TTCSEEEECCS--S-GGGHHHHHHHHHTTTCCEEEESSCC
T ss_pred HHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHH--cCCCEEEEeCC--C-cchhHHHHHHHHHCCCcEEEecCCC
Confidence 44556677778898 8875542 32 34555556 57998887332 1 222 34556553 79999886654
Q ss_pred C
Q 008619 99 C 99 (559)
Q Consensus 99 d 99 (559)
.
T Consensus 95 ~ 95 (309)
T 2fvy_A 95 S 95 (309)
T ss_dssp C
T ss_pred C
Confidence 4
No 400
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=25.93 E-value=1.2e+02 Score=29.14 Aligned_cols=66 Identities=11% Similarity=0.170 Sum_probs=40.1
Q ss_pred HHHHHHHHHhhCCCEEEEEC---CHH---HHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC--CCcEEEEecCC
Q 008619 29 AAAELKFKLEAMDYIVSTFY---NEN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNIH 98 (559)
Q Consensus 29 ~~~~L~~~L~~~gy~V~ta~---~~~---eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir--diPVImLSa~~ 98 (559)
+...++..++..||.+..+. +.+ +.++.+.. ..+|-||+....+. ...+.++.+. .+|||++....
T Consensus 21 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~--~~vdgiIi~~~~~~--~~~~~~~~~~~~giPvV~~~~~~ 94 (330)
T 3uug_A 21 DGNNIVKQLQEAGYKTDLQYADDDIPNQLSQIENMVT--KGVKVLVIASIDGT--TLSDVLKQAGEQGIKVIAYDRLI 94 (330)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH--HTCSEEEECCSSGG--GGHHHHHHHHHTTCEEEEESSCC
T ss_pred HHHHHHHHHHHcCCEEEEeeCCCCHHHHHHHHHHHHH--cCCCEEEEEcCCch--hHHHHHHHHHHCCCCEEEECCCC
Confidence 34556677778899987554 222 34555555 56998887543322 2234555553 79999886543
No 401
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=25.85 E-value=96 Score=33.17 Aligned_cols=55 Identities=16% Similarity=0.108 Sum_probs=40.9
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecC
Q 008619 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVT 72 (559)
Q Consensus 15 p~glrVLIVDDD~~~~~~L~~~L~~~gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~ 72 (559)
+..-+|+.+|-++...+.++..+++.|..|. ...++.+..... . ..||+||+|.-
T Consensus 124 ~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~-~--~~FD~Il~D~P 179 (464)
T 3m6w_A 124 GGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAF-G--TYFHRVLLDAP 179 (464)
T ss_dssp TTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHH-C--SCEEEEEEECC
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhc-c--ccCCEEEECCC
Confidence 3335899999999999999999998876544 455666654333 3 57999999974
No 402
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=25.84 E-value=1.2e+02 Score=26.30 Aligned_cols=51 Identities=10% Similarity=0.194 Sum_probs=32.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCE--EE-EECCHHHHHHHhhcCCCCeeEEEEec
Q 008619 18 LRVLLLDQDSSAAAELKFKLEAMDYI--VS-TFYNENEALSAFSDKPENFHVAIVEV 71 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~--V~-ta~~~~eAL~~Lre~~~~pDLVIvDv 71 (559)
.+|..||-++...+..+..+...+.. +. ...+..+.+..+. ..||+|++|.
T Consensus 55 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~---~~fD~i~~~~ 108 (177)
T 2esr_A 55 SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLT---GRFDLVFLDP 108 (177)
T ss_dssp CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBC---SCEEEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhc---CCCCEEEECC
Confidence 47788888888887777777766542 33 4456555444322 3488888764
No 403
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=25.83 E-value=2.3e+02 Score=27.20 Aligned_cols=54 Identities=9% Similarity=0.005 Sum_probs=35.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCC--CEEEEE-CCHHHHHHHhhc--CCCCeeEEEE
Q 008619 16 KGLRVLLLDQDSSAAAELKFKLEAMD--YIVSTF-YNENEALSAFSD--KPENFHVAIV 69 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~g--y~V~ta-~~~~eAL~~Lre--~~~~pDLVIv 69 (559)
.+..++++-....+....+.++...+ .++..+ .+.++++...++ ....+|+||+
T Consensus 11 ~m~~ii~i~~~~~L~~~~~~i~~e~~~~~~I~vi~~~le~av~~a~~~~~~~~~dVIIS 69 (225)
T 2pju_A 11 DDKPVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLANERCDAIIA 69 (225)
T ss_dssp --CCEEEEECCHHHHHHHHHHHTTTTTTCEEEEECCCHHHHHHHHHHHTTTSCCSEEEE
T ss_pred cCCCEEEEEchHHHHHHHHHHHHhhCCCceEEEecCcHHHHHHHHHHHHhcCCCeEEEe
Confidence 34577878888888888888887654 344443 567778876654 1135888887
No 404
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=25.83 E-value=98 Score=32.33 Aligned_cols=98 Identities=11% Similarity=0.085 Sum_probs=63.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHc--CCCcEEEE
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA--KDLPTIIT 94 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~I--rdiPVImL 94 (559)
+.+|+|+.-.. +-..+...|...|+.|+.+..-.+.++.++. ..+.++.-|..- .++|+.+ .+.-+|++
T Consensus 4 ~~~viIiG~Gr-~G~~va~~L~~~g~~vvvId~d~~~v~~~~~--~g~~vi~GDat~------~~~L~~agi~~A~~viv 74 (413)
T 3l9w_A 4 GMRVIIAGFGR-FGQITGRLLLSSGVKMVVLDHDPDHIETLRK--FGMKVFYGDATR------MDLLESAGAAKAEVLIN 74 (413)
T ss_dssp CCSEEEECCSH-HHHHHHHHHHHTTCCEEEEECCHHHHHHHHH--TTCCCEESCTTC------HHHHHHTTTTTCSEEEE
T ss_pred CCeEEEECCCH-HHHHHHHHHHHCCCCEEEEECCHHHHHHHHh--CCCeEEEcCCCC------HHHHHhcCCCccCEEEE
Confidence 46899999865 5567778888889999977777777788877 556667666533 3466665 35666666
Q ss_pred ecCCCHHH---HHHHHHcCCC-EEEeCCCCHHH
Q 008619 95 SNIHCLST---MMKCIALGAV-EFLRKPLSEDK 123 (559)
Q Consensus 95 Sa~~d~e~---v~kAi~~GA~-DYLvKPis~ee 123 (559)
+..++... +..+-+.+.. -.+.+-.+.+.
T Consensus 75 ~~~~~~~n~~i~~~ar~~~p~~~Iiara~~~~~ 107 (413)
T 3l9w_A 75 AIDDPQTNLQLTEMVKEHFPHLQIIARARDVDH 107 (413)
T ss_dssp CCSSHHHHHHHHHHHHHHCTTCEEEEEESSHHH
T ss_pred CCCChHHHHHHHHHHHHhCCCCeEEEEECCHHH
Confidence 55544333 3444566665 45555445443
No 405
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}
Probab=25.82 E-value=2.2e+02 Score=27.99 Aligned_cols=104 Identities=11% Similarity=0.138 Sum_probs=58.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHH-hhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEEE
Q 008619 16 KGLRVLLLDQDSSAAAELKFKL-EAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTII 93 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L-~~~gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVIm 93 (559)
++++|.||.--..-...+..+. ...+++++ .+....+..+.+.+. ...+-+.. +--++++. .++-+|+
T Consensus 7 ~~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~-~g~~~~~~--------~~~~~l~~-~~~D~V~ 76 (346)
T 3cea_A 7 KPLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNE-LGVETTYT--------NYKDMIDT-ENIDAIF 76 (346)
T ss_dssp CCEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHT-TCCSEEES--------CHHHHHTT-SCCSEEE
T ss_pred CcceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHH-hCCCcccC--------CHHHHhcC-CCCCEEE
Confidence 4589999998765554455444 33478866 445444444444331 22221211 22233321 1455555
Q ss_pred EecC--CCHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHH
Q 008619 94 TSNI--HCLSTMMKCIALGAVEFLRKPLS--EDKLRNLWQ 129 (559)
Q Consensus 94 LSa~--~d~e~v~kAi~~GA~DYLvKPis--~eeL~~iIq 129 (559)
++.. ...+.+..++++|..=|+-||+. .++...+++
T Consensus 77 i~tp~~~h~~~~~~al~~G~~v~~eKp~~~~~~~~~~l~~ 116 (346)
T 3cea_A 77 IVAPTPFHPEMTIYAMNAGLNVFCEKPLGLDFNEVDEMAK 116 (346)
T ss_dssp ECSCGGGHHHHHHHHHHTTCEEEECSCCCSCHHHHHHHHH
T ss_pred EeCChHhHHHHHHHHHHCCCEEEEcCCCCCCHHHHHHHHH
Confidence 5543 34577889999998888889974 666655443
No 406
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=25.73 E-value=2.2e+02 Score=26.78 Aligned_cols=64 Identities=11% Similarity=0.104 Sum_probs=39.1
Q ss_pred HHHHHHHHHhhCCCEEEEECCH------HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC--CCcEEEEecCC
Q 008619 29 AAAELKFKLEAMDYIVSTFYNE------NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNIH 98 (559)
Q Consensus 29 ~~~~L~~~L~~~gy~V~ta~~~------~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir--diPVImLSa~~ 98 (559)
+...++..+++.||.+..+... .+.++.+.. ..+|-||+--.... + ++++.+. .+|||++....
T Consensus 30 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdGiI~~~~~~~--~--~~~~~l~~~~iPvV~i~~~~ 101 (295)
T 3hcw_A 30 VLLGISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQ--RMVDAFILLYSKEN--D--PIKQMLIDESMPFIVIGKPT 101 (295)
T ss_dssp HHHHHHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHT--TCCSEEEESCCCTT--C--HHHHHHHHTTCCEEEESCCC
T ss_pred HHHHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHh--CCcCEEEEcCcccC--h--HHHHHHHhCCCCEEEECCCC
Confidence 3455666677789998865532 235566666 67998887432212 1 3444443 79999886543
No 407
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0
Probab=25.53 E-value=1.5e+02 Score=27.38 Aligned_cols=80 Identities=11% Similarity=0.218 Sum_probs=50.0
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHh-hcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEEE
Q 008619 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAF-SDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTII 93 (559)
Q Consensus 15 p~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~L-re~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVIm 93 (559)
..+.+|||.....-+-..+...|.+.|+.|+.+....+.++.+ .+....+.++.+|+.-.+ +-.++++.+..+-+|+
T Consensus 12 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~--~~~~~~~~~~~id~li 89 (249)
T 3f9i_A 12 LTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALKDNYTIEVCNLANKE--ECSNLISKTSNLDILV 89 (249)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHH--HHHHHHHTCSCCSEEE
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhccCccEEEcCCCCHH--HHHHHHHhcCCCCEEE
Confidence 4567899999999999999999999999988554434444333 221134566666664322 1223445444566666
Q ss_pred Eec
Q 008619 94 TSN 96 (559)
Q Consensus 94 LSa 96 (559)
..+
T Consensus 90 ~~A 92 (249)
T 3f9i_A 90 CNA 92 (249)
T ss_dssp ECC
T ss_pred ECC
Confidence 554
No 408
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=25.52 E-value=1.9e+02 Score=27.16 Aligned_cols=63 Identities=10% Similarity=0.068 Sum_probs=37.5
Q ss_pred HHHHHHHHhhCCCEEEEECC------HHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHc--CCCcEEEEecCC
Q 008619 30 AAELKFKLEAMDYIVSTFYN------ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA--KDLPTIITSNIH 98 (559)
Q Consensus 30 ~~~L~~~L~~~gy~V~ta~~------~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~I--rdiPVImLSa~~ 98 (559)
...+++.+++.||.+..+.. ..+.++.+.+ ..+|-||+--.... . +.++.+ ..+|||++....
T Consensus 29 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~~-~---~~~~~l~~~~iPvV~i~~~~ 99 (288)
T 3gv0_A 29 VFGITEVLSTTQYHLVVTPHIHAKDSMVPIRYILET--GSADGVIISKIEPN-D---PRVRFMTERNMPFVTHGRSD 99 (288)
T ss_dssp HHHHHHHHTTSSCEEEECCBSSGGGTTHHHHHHHHH--TCCSEEEEESCCTT-C---HHHHHHHHTTCCEEEESCCC
T ss_pred HHHHHHHHHHcCCEEEEecCCcchhHHHHHHHHHHc--CCccEEEEecCCCC-c---HHHHHHhhCCCCEEEECCcC
Confidence 44456666778999886542 2345556666 57887776432222 1 344444 389999887643
No 409
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A
Probab=25.48 E-value=1.3e+02 Score=28.67 Aligned_cols=32 Identities=9% Similarity=0.071 Sum_probs=27.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFY 48 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~ 48 (559)
+++|||....--+-..|...|.+.||+|+.+.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~ 33 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCG 33 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEc
Confidence 46899999988888888888888899988654
No 410
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=25.44 E-value=2.8e+02 Score=27.87 Aligned_cols=77 Identities=16% Similarity=0.119 Sum_probs=49.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCC-EEE-EECCHHHHHHHhhcCC------------CCeeEEEEecCCCCCCCHHHHH
Q 008619 18 LRVLLLDQDSSAAAELKFKLEAMDY-IVS-TFYNENEALSAFSDKP------------ENFHVAIVEVTTSNTDGSFKFL 83 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy-~V~-ta~~~~eAL~~Lre~~------------~~pDLVIvDv~MPd~mdG~eLL 83 (559)
-+|+-||-++...+..+.-++..|. .+. .+.+..+.+..+.... ..||+||+|---.+ . .-+++
T Consensus 236 ~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g-~-~~~~~ 313 (369)
T 3bt7_A 236 DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSG-L-DSETE 313 (369)
T ss_dssp SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCTTC-C-CHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhccccccccccccccCCCCEEEECcCccc-c-HHHHH
Confidence 4899999999999998888887765 343 5567777766554311 26999999852222 1 23566
Q ss_pred HHcCCCcEEEEec
Q 008619 84 ETAKDLPTIITSN 96 (559)
Q Consensus 84 e~IrdiPVImLSa 96 (559)
+.++....|++.+
T Consensus 314 ~~l~~~g~ivyvs 326 (369)
T 3bt7_A 314 KMVQAYPRILYIS 326 (369)
T ss_dssp HHHTTSSEEEEEE
T ss_pred HHHhCCCEEEEEE
Confidence 6666444444433
No 411
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=25.37 E-value=2.5e+02 Score=26.34 Aligned_cols=66 Identities=20% Similarity=0.265 Sum_probs=43.4
Q ss_pred CHHHHHHHhhcCCCCeeEE-EEecCCCCCC---CHHHHHHHcC---CCcEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008619 49 NENEALSAFSDKPENFHVA-IVEVTTSNTD---GSFKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (559)
Q Consensus 49 ~~~eAL~~Lre~~~~pDLV-IvDv~MPd~m---dG~eLLe~Ir---diPVImLSa~~d~e~v~kAi~~GA~DYLvK 117 (559)
+..+..+.+.+ ...|.+ +.|..-.. . ..+++++.++ ++|||+.-.-.+.+.+.+++..||+..++-
T Consensus 31 d~~~~a~~~~~--~Gad~i~v~d~~~~~-~~~~~~~~~i~~i~~~~~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg 103 (253)
T 1thf_D 31 DPVELGKFYSE--IGIDELVFLDITASV-EKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSIN 103 (253)
T ss_dssp CHHHHHHHHHH--TTCCEEEEEESSCSS-SHHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred CHHHHHHHHHH--cCCCEEEEECCchhh-cCCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 55555566655 445544 44443222 1 1245566664 699999888888899999999999988763
No 412
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=25.10 E-value=1.4e+02 Score=30.44 Aligned_cols=32 Identities=16% Similarity=0.240 Sum_probs=22.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC
Q 008619 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFY 48 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~ 48 (559)
.+++|||+.....- ..+...+++.||+|+.+.
T Consensus 18 ~~~~ili~g~g~~g-~~~~~a~~~~G~~v~~v~ 49 (433)
T 2dwc_A 18 SAQKILLLGSGELG-KEIAIEAQRLGVEVVAVD 49 (433)
T ss_dssp TCCEEEEESCSHHH-HHHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHCCCEEEEEE
Confidence 34699999987544 445566677899988554
No 413
>1req_B Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 1e1c_B* 2req_B* 3req_B* 4req_B* 5req_B* 6req_B* 7req_B*
Probab=25.00 E-value=77 Score=35.49 Aligned_cols=96 Identities=8% Similarity=-0.111 Sum_probs=62.0
Q ss_pred HHHHHHHHhhCCCEEEEE---CCHHHHHHHhhcCCCCeeEEEEecCCCCCCCH-HHHHHHcC--CCcEEEEecCCCH--H
Q 008619 30 AAELKFKLEAMDYIVSTF---YNENEALSAFSDKPENFHVAIVEVTTSNTDGS-FKFLETAK--DLPTIITSNIHCL--S 101 (559)
Q Consensus 30 ~~~L~~~L~~~gy~V~ta---~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG-~eLLe~Ir--diPVImLSa~~d~--e 101 (559)
...+..+|+..||+|+.. .+ +++.+...+ ..+|+|.+...+...+.. -++++.++ .+..|++.+.... +
T Consensus 527 a~~va~~l~~aGfeVi~~g~~~t-ee~v~aa~e--~~adiv~lSsl~~~~~~~~~~v~~~Lk~aG~~~V~vgG~P~~d~~ 603 (637)
T 1req_B 527 EGFSSPVWHIAGIDTPQVEGGTT-AEIVEAFKK--SGAQVADLCSSAKVYAQQGLEVAKALKAAGAKALYLSGAFKEFGD 603 (637)
T ss_dssp HHHHHHHHHHTTCBCCEEECCCH-HHHHHHHHH--HTCSEEEEECCHHHHHHHHHHHHHHHHHTTCSEEEEESCGGGGGG
T ss_pred HHHHHHHHHhCCeeEEeCCCCCC-HHHHHHHHh--cCCCEEEEecccHHHHHHHHHHHHHHHhCCCCeEEEeCCCCccch
Confidence 456677888899998843 34 888888887 678999887654431222 23555554 4445667764322 1
Q ss_pred HHHHHHHcCCCEEEeCCCCHHHHHHHHH
Q 008619 102 TMMKCIALGAVEFLRKPLSEDKLRNLWQ 129 (559)
Q Consensus 102 ~v~kAi~~GA~DYLvKPis~eeL~~iIq 129 (559)
...+..+ |+++|+.--.+..++...+.
T Consensus 604 ~~~~~~~-G~D~~~~~g~~~~~~l~~l~ 630 (637)
T 1req_B 604 DAAEAEK-LIDGRLFMGMDVVDTLSSTL 630 (637)
T ss_dssp GHHHHHH-HCCCEECTTCCHHHHHHHHH
T ss_pred hhHHHHh-ccceEecCCcCHHHHHHHHH
Confidence 2334445 99999998888877766543
No 414
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=24.99 E-value=1.9e+02 Score=28.89 Aligned_cols=66 Identities=12% Similarity=0.095 Sum_probs=38.0
Q ss_pred cEEEEEeCCHH----HHHHHHHHHhhCCCEEEE---E----CCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHc
Q 008619 18 LRVLLLDQDSS----AAAELKFKLEAMDYIVST---F----YNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA 86 (559)
Q Consensus 18 lrVLIVDDD~~----~~~~L~~~L~~~gy~V~t---a----~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~I 86 (559)
-+|.||-++.. ..+.++..+++.|.+|+. + .+....+..|+. ..+|+|++....++ +...+++.+
T Consensus 165 ~~vail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~l~~i~~--~~~d~v~~~~~~~~--~~~~~~~~~ 240 (419)
T 3h5l_A 165 NKIAIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIPVSDWGPTLAKLRA--DPPAVIVVTHFYPQ--DQALFMNQF 240 (419)
T ss_dssp SEEEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSSCSCCHHHHHHHHH--SCCSEEEECCCCHH--HHHHHHHHH
T ss_pred CEEEEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCCCCCccHHHHHHHHHh--cCCCEEEEccccCc--hHHHHHHHH
Confidence 46666654444 334455566666777652 1 355666777766 56888887532222 345566666
Q ss_pred C
Q 008619 87 K 87 (559)
Q Consensus 87 r 87 (559)
+
T Consensus 241 ~ 241 (419)
T 3h5l_A 241 M 241 (419)
T ss_dssp T
T ss_pred H
Confidence 5
No 415
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=24.97 E-value=2e+02 Score=27.09 Aligned_cols=63 Identities=8% Similarity=0.036 Sum_probs=38.1
Q ss_pred HHHHHHHHHhhCCCEEEEECC---H---HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHc--CCCcEEEEecC
Q 008619 29 AAAELKFKLEAMDYIVSTFYN---E---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA--KDLPTIITSNI 97 (559)
Q Consensus 29 ~~~~L~~~L~~~gy~V~ta~~---~---~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~I--rdiPVImLSa~ 97 (559)
+...++..++..||.+..+.. . .+.++.+.. ..+|-||+--. + .+ -+.++.+ ..+|||++...
T Consensus 34 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~--~-~~-~~~~~~l~~~~iPvV~~~~~ 104 (289)
T 2fep_A 34 LARGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLG--KQVDGIVFMGG--N-IT-DEHVAEFKRSPVPIVLAASV 104 (289)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH--TTCSEEEECCS--C-CC-HHHHHHHHHSSSCEEEESCC
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHh--CCCCEEEEecC--C-CC-HHHHHHHHhcCCCEEEEccc
Confidence 445566677788999875532 2 245666666 67998877432 1 12 2334444 37999988654
No 416
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=24.97 E-value=46 Score=35.17 Aligned_cols=53 Identities=21% Similarity=0.186 Sum_probs=31.2
Q ss_pred CcEEEEEeCCH---HHHHHHHHHHhhCCCEEEEEC---CH----HHHHHHhhcCCCCeeEEEEec
Q 008619 17 GLRVLLLDQDS---SAAAELKFKLEAMDYIVSTFY---NE----NEALSAFSDKPENFHVAIVEV 71 (559)
Q Consensus 17 glrVLIVDDD~---~~~~~L~~~L~~~gy~V~ta~---~~----~eAL~~Lre~~~~pDLVIvDv 71 (559)
+.+|++||-|+ .....+...-...+..|.... +. .+++..++. ..+|+||+|.
T Consensus 129 G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~~~--~~~D~VIIDT 191 (433)
T 2xxa_A 129 KKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKL--KFYDVLLVDT 191 (433)
T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHHHH--TTCSEEEEEC
T ss_pred CCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHHHh--CCCCEEEEEC
Confidence 67899998885 222223323333466665433 22 334555554 4699999999
No 417
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.88 E-value=60 Score=24.87 Aligned_cols=50 Identities=14% Similarity=0.177 Sum_probs=35.7
Q ss_pred CCCceecCHHHHHHHHHHHHHhCCCCCCChHHHhhcCCCCCCHHHHHHhhhhhhhhhc
Q 008619 316 KKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRR 373 (559)
Q Consensus 316 kk~r~~Wt~~lh~~Fv~av~~lg~~~a~pk~il~~m~v~~lt~~~v~shlQkyr~~~~ 373 (559)
++..-.||++=|+.|++|+.+.| .+ =..|-.+ |+|=|..+|..| |-+.++
T Consensus 9 r~~~~~WT~eE~~~F~~~~~~~g-k~--w~~Ia~~--l~~rt~~~~v~~---Yy~~Kk 58 (61)
T 2eqr_A 9 RQFMNVWTDHEKEIFKDKFIQHP-KN--FGLIASY--LERKSVPDCVLY---YYLTKK 58 (61)
T ss_dssp CSCCCSCCHHHHHHHHHHHHHST-TC--HHHHHHH--CTTSCHHHHHHH---HHHHTC
T ss_pred cccCCCCCHHHHHHHHHHHHHhC-CC--HHHHHHH--cCCCCHHHHHHH---HHHhcC
Confidence 35567999999999999999998 22 1445444 578888887644 555444
No 418
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=24.88 E-value=3.2e+02 Score=26.22 Aligned_cols=66 Identities=6% Similarity=-0.081 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhhCCCEEEEECC---HH---HHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC--CCcEEEEecCC
Q 008619 28 SAAAELKFKLEAMDYIVSTFYN---EN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNIH 98 (559)
Q Consensus 28 ~~~~~L~~~L~~~gy~V~ta~~---~~---eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir--diPVImLSa~~ 98 (559)
.+...++..++..||.+..+.. .+ +.++.+.. ..+|-||+--. + .+.-.+.+.+. .+|+|++....
T Consensus 80 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~--~-~~~~~~~~~~~~~~iPvV~~~~~~ 153 (338)
T 3dbi_A 80 ELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLD--LRCDAIMIYPR--F-LSVDEIDDIIDAHSQPIMVLNRRL 153 (338)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHH--TTCSEEEECCS--S-SCHHHHHHHHHHCSSCEEEESSCC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHh--CCCCEEEEeCC--C-CChHHHHHHHHcCCCCEEEEcCCC
Confidence 4556677777788999886542 22 35566666 67898887432 2 23333444443 68999886543
No 419
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=24.75 E-value=1.3e+02 Score=21.73 Aligned_cols=46 Identities=30% Similarity=0.337 Sum_probs=34.6
Q ss_pred ceecCHHHHHHHHHHHHHhCCCCCCChHHHhhcCCCCCCHHHHHHhhhhh
Q 008619 319 KVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKY 368 (559)
Q Consensus 319 r~~Wt~~lh~~Fv~av~~lg~~~a~pk~il~~m~v~~lt~~~v~shlQky 368 (559)
|-.||+|=...++++|++.|..+ =+.|-+.| +|=|-.+++.|-++|
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~~~--W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGTDD--WKVIANYL--PNRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSC--HHHHHHTS--TTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCC--HHHHHHHc--CCCCHHHHHHHHHHH
Confidence 34799999999999999999522 34555554 578888888776655
No 420
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=24.66 E-value=1.4e+02 Score=27.73 Aligned_cols=64 Identities=6% Similarity=0.071 Sum_probs=38.3
Q ss_pred HHHHHHHHhhCCCEEEEEC-----CHH---HHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC--CCcEEEEecC
Q 008619 30 AAELKFKLEAMDYIVSTFY-----NEN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (559)
Q Consensus 30 ~~~L~~~L~~~gy~V~ta~-----~~~---eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir--diPVImLSa~ 97 (559)
...++..++..||.+..+. +.+ +.++.+.. ..+|-||+-....+ .-.+.++.+. .+|||++...
T Consensus 26 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgii~~~~~~~--~~~~~~~~~~~~~iPvV~~~~~ 99 (289)
T 3brs_A 26 VEGAQMAAKEYEIKLEFMAPEKEEDYLVQNELIEEAIK--RKPDVILLAAADYE--KTYDAAKEIKDAGIKLIVIDSG 99 (289)
T ss_dssp HHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHH--TCCSEEEECCSCTT--TTHHHHTTTGGGTCEEEEESSC
T ss_pred HHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHH--hCCCEEEEeCCChH--HhHHHHHHHHHCCCcEEEECCC
Confidence 3445666667799988653 222 34556666 57898887543222 1124555553 7999988653
No 421
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5
Probab=24.63 E-value=4.7e+02 Score=25.42 Aligned_cols=132 Identities=14% Similarity=0.132 Sum_probs=67.4
Q ss_pred CcEEEEEeCCHHHHH-HHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEEEEe
Q 008619 17 GLRVLLLDQDSSAAA-ELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITS 95 (559)
Q Consensus 17 glrVLIVDDD~~~~~-~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVImLS 95 (559)
+++|.||.--..-.. .+..+....+++++.+....+..+.+.+. .....+ . .+..+++ ..++-+|+++
T Consensus 2 ~~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~-~g~~~~-----~---~~~~~~l--~~~~D~V~i~ 70 (323)
T 1xea_A 2 SLKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATR-YRVSAT-----C---TDYRDVL--QYGVDAVMIH 70 (323)
T ss_dssp CEEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHH-TTCCCC-----C---SSTTGGG--GGCCSEEEEC
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHH-cCCCcc-----c---cCHHHHh--hcCCCEEEEE
Confidence 379999998765553 34444333477877554434433333321 111110 1 1112223 1355556665
Q ss_pred cCC--CHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHHHHHHhcCCCCccCCCcHHHHHHHHHHhh
Q 008619 96 NIH--CLSTMMKCIALGAVEFLRKPL--SEDKLRNLWQHVVHKAFNAGGSALSDSLKPVKESVVSMLHL 160 (559)
Q Consensus 96 a~~--d~e~v~kAi~~GA~DYLvKPi--s~eeL~~iIq~vlrr~~~~~~~~~s~~Lt~re~eVl~li~~ 160 (559)
... -.+.+..++++|..=|+-||+ +.++...+++.+-+.... .......++.+.-..+.+++..
T Consensus 71 tp~~~h~~~~~~al~~Gk~V~~EKP~~~~~~~~~~l~~~a~~~g~~-~~v~~~~r~~p~~~~~~~~i~~ 138 (323)
T 1xea_A 71 AATDVHSTLAAFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQP-LYVGFNRRHIPLYNQHLSELAQ 138 (323)
T ss_dssp SCGGGHHHHHHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCC-EEEECGGGCCHHHHHHCHHHHH
T ss_pred CCchhHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHhcCCe-EEEeeccccCHHHHHHHHHHhc
Confidence 443 446777899999988999997 466666654433222110 0011123455555555555543
No 422
>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}
Probab=24.61 E-value=1.6e+02 Score=29.71 Aligned_cols=131 Identities=8% Similarity=0.057 Sum_probs=71.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEEE
Q 008619 16 KGLRVLLLDQDSSAAAELKFKLEAM-DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTII 93 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~-gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVIm 93 (559)
+++||.||.--..-.......|... +++|+ .|....+..+ .. . +.+-.. .+--++++. .++-+|+
T Consensus 6 ~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~--~~--~-~~~~~~-------~~~~~ll~~-~~~D~V~ 72 (364)
T 3e82_A 6 NTINIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVK--RD--L-PDVTVI-------ASPEAAVQH-PDVDLVV 72 (364)
T ss_dssp -CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHH--HH--C-TTSEEE-------SCHHHHHTC-TTCSEEE
T ss_pred CcceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHH--hh--C-CCCcEE-------CCHHHHhcC-CCCCEEE
Confidence 3589999998766655455556554 78887 3433222222 11 1 111111 122333331 1454555
Q ss_pred Eec--CCCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHHHHHHhcCCCCccCCCcHHHHHHHHHHhh
Q 008619 94 TSN--IHCLSTMMKCIALGAVEFLRKPL--SEDKLRNLWQHVVHKAFNAGGSALSDSLKPVKESVVSMLHL 160 (559)
Q Consensus 94 LSa--~~d~e~v~kAi~~GA~DYLvKPi--s~eeL~~iIq~vlrr~~~~~~~~~s~~Lt~re~eVl~li~~ 160 (559)
++. ..-.+.+..|+++|..=|+-||+ +.++....++.+-+.... .......++.+.-..+.+++..
T Consensus 73 i~tp~~~H~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~-~~v~~~~r~~p~~~~~~~~i~~ 142 (364)
T 3e82_A 73 IASPNATHAPLARLALNAGKHVVVDKPFTLDMQEARELIALAEEKQRL-LSVFHNRRWDSDYLGIRQVIEQ 142 (364)
T ss_dssp ECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCC-EEECCCCTTCHHHHHHHHHHHH
T ss_pred EeCChHHHHHHHHHHHHCCCcEEEeCCCcCCHHHHHHHHHHHHHhCCe-EEEEeecccCHHHHHHHHHHHc
Confidence 544 33567789999999999999997 667777665544322110 0011134556666666666654
No 423
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=24.59 E-value=3.5e+02 Score=27.36 Aligned_cols=76 Identities=8% Similarity=0.143 Sum_probs=49.2
Q ss_pred hCCC-EEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCC-CCH----------HHHHHHc----C----CCcEEEEe-cC
Q 008619 39 AMDY-IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNT-DGS----------FKFLETA----K----DLPTIITS-NI 97 (559)
Q Consensus 39 ~~gy-~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~-mdG----------~eLLe~I----r----diPVImLS-a~ 97 (559)
+.|. .+.++.+.++|..+..- .+|+|++..-+... .-| .+.++.+ + ++.|+.-. .-
T Consensus 161 ~~gL~Ti~~v~~~eeA~amA~a---gpDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vnpdvivLc~gGpI 237 (286)
T 2p10_A 161 KLDLLTTPYVFSPEDAVAMAKA---GADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIRDDIIILSHGGPI 237 (286)
T ss_dssp HTTCEECCEECSHHHHHHHHHH---TCSEEEEECSCC---------CCCHHHHHHHHHHHHHHHHHHCSCCEEEEESTTC
T ss_pred HCCCeEEEecCCHHHHHHHHHc---CCCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhCCCcEEEecCCCC
Confidence 4565 45589999999988765 68999998875420 112 2233322 1 44333333 33
Q ss_pred CCHHHHHHHHHc--CCCEEEeC
Q 008619 98 HCLSTMMKCIAL--GAVEFLRK 117 (559)
Q Consensus 98 ~d~e~v~kAi~~--GA~DYLvK 117 (559)
.+.+.+..++++ |+++|+.-
T Consensus 238 stpeDv~~~l~~t~G~~G~~gA 259 (286)
T 2p10_A 238 ANPEDARFILDSCQGCHGFYGA 259 (286)
T ss_dssp CSHHHHHHHHHHCTTCCEEEES
T ss_pred CCHHHHHHHHhcCCCccEEEee
Confidence 678899999999 99999984
No 424
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=24.53 E-value=89 Score=30.94 Aligned_cols=134 Identities=12% Similarity=0.073 Sum_probs=71.4
Q ss_pred CcEEEEEeC-CHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHc-------CC
Q 008619 17 GLRVLLLDQ-DSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA-------KD 88 (559)
Q Consensus 17 glrVLIVDD-D~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~I-------rd 88 (559)
++||.||.- -..-...+. .|...+.+++.+.+.......+.+ ..+..-+. .+--++++.+ .+
T Consensus 3 mirvgiIG~gG~i~~~h~~-~l~~~~~~lvav~d~~~~~~~~~~--~~~~~~~~-------~~~~~ll~~~~~l~~~~~~ 72 (312)
T 3o9z_A 3 MTRFALTGLAGYIAPRHLK-AIKEVGGVLVASLDPATNVGLVDS--FFPEAEFF-------TEPEAFEAYLEDLRDRGEG 72 (312)
T ss_dssp CCEEEEECTTSSSHHHHHH-HHHHTTCEEEEEECSSCCCGGGGG--TCTTCEEE-------SCHHHHHHHHHHHHHTTCC
T ss_pred ceEEEEECCChHHHHHHHH-HHHhCCCEEEEEEcCCHHHHHHHh--hCCCCcee-------CCHHHHHHHhhhhcccCCC
Confidence 579999987 433333343 334447777754443322222222 11111111 1222344221 24
Q ss_pred CcEEEEec--CCCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHHHHHHhcCCCCccCCCcHHHHHHHHHHhhh
Q 008619 89 LPTIITSN--IHCLSTMMKCIALGAVEFLRKPL--SEDKLRNLWQHVVHKAFNAGGSALSDSLKPVKESVVSMLHLK 161 (559)
Q Consensus 89 iPVImLSa--~~d~e~v~kAi~~GA~DYLvKPi--s~eeL~~iIq~vlrr~~~~~~~~~s~~Lt~re~eVl~li~~~ 161 (559)
+-+|+++. ..-.+.+.+|+++|..=|+-||+ +.++....+..+-+..... ......++.+.-..+.+++..+
T Consensus 73 vD~V~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~-~v~~~~R~~p~~~~~k~~i~~g 148 (312)
T 3o9z_A 73 VDYLSIASPNHLHYPQIRMALRLGANALSEKPLVLWPEEIARLKELEARTGRRV-YTVLQLRVHPSLLALKERLGQE 148 (312)
T ss_dssp CSEEEECSCGGGHHHHHHHHHHTTCEEEECSSSCSCHHHHHHHHHHHHHHCCCE-EECCGGGGCHHHHHHHHHHHTC
T ss_pred CcEEEECCCchhhHHHHHHHHHCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEE-EEEeehhcCHHHHHHHHHHHcC
Confidence 55555544 34566789999999999999997 5678877666543321110 1112345566666666666654
No 425
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}
Probab=24.53 E-value=1.9e+02 Score=27.75 Aligned_cols=78 Identities=13% Similarity=0.120 Sum_probs=47.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEE-ECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHH-HHHHHcCCCcEEE
Q 008619 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVST-FYNENEALSAFSDKPENFHVAIVEVTTSNTDGSF-KFLETAKDLPTII 93 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy~V~t-a~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~-eLLe~IrdiPVIm 93 (559)
.+.+|||..-..-+-..+...|.+.|+.|+. +.+...+-+.+.+....+.++.+|+ .+ .+.+ ++++.+..+-+|+
T Consensus 15 ~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl--~d-~~~v~~~~~~~~~iD~lv 91 (291)
T 3rd5_A 15 AQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTMAGQVEVRELDL--QD-LSSVRRFADGVSGADVLI 91 (291)
T ss_dssp TTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTSSSEEEEEECCT--TC-HHHHHHHHHTCCCEEEEE
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCeeEEEcCC--CC-HHHHHHHHHhcCCCCEEE
Confidence 3568999999988999999999999999884 4555554444444212344444554 44 3333 3445443455555
Q ss_pred Eec
Q 008619 94 TSN 96 (559)
Q Consensus 94 LSa 96 (559)
-.+
T Consensus 92 ~nA 94 (291)
T 3rd5_A 92 NNA 94 (291)
T ss_dssp ECC
T ss_pred ECC
Confidence 444
No 426
>2xvy_A Chelatase, putative; metal binding protein; HET: HEM; 1.70A {Desulfovibrio vulgaris} PDB: 2xvx_A* 2xvz_A*
Probab=24.44 E-value=39 Score=32.74 Aligned_cols=43 Identities=21% Similarity=0.451 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHhhC-CCccCCCC--------------CCCCchhHHHHHHHHcCCCCC
Q 008619 507 EEVIDKVVKEAISK-PWLPLPLG--------------LKPPSADSVLAELSRQGISTI 549 (559)
Q Consensus 507 ~e~~d~~~~~~~~~-pw~plp~g--------------lk~p~~~~v~~el~~qg~~~~ 549 (559)
.+.|++....+=.. |+.|.=++ +..|+++.++.+|..+|+..|
T Consensus 25 ~~~~~~~~~~l~~~~~~~~V~~af~~~~i~~~l~~~~~~~P~i~~al~~l~~~G~~~i 82 (269)
T 2xvy_A 25 RPALDKMGDRVRAAHPDIPVRWAYTAKMIRAKLRAEGIAAPSPAEALAGMAEEGFTHV 82 (269)
T ss_dssp THHHHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHHCCCCeEEeehhhHHHHHHHHHcCCCCCCHHHHHHHHHHCCCCEE
Confidence 34555544333322 67676666 899999999999999999864
No 427
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2
Probab=24.42 E-value=4.5e+02 Score=24.74 Aligned_cols=73 Identities=10% Similarity=0.145 Sum_probs=43.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCH-----HHH---HHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCC
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNE-----NEA---LSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKD 88 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~-----~eA---L~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ird 88 (559)
+++|||..-.-.+-..+...|.+.|++|+.+... .+. +..+.. ....++..|+. + --.+.+.+..
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~--d---~~~l~~~~~~ 76 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQ--LGAKLIEASLD--D---HQRLVDALKQ 76 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHT--TTCEEECCCSS--C---HHHHHHHHTT
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHh--CCeEEEeCCCC--C---HHHHHHHHhC
Confidence 4689999987777777777777778988865532 222 223333 34666666663 2 2234444555
Q ss_pred CcEEEEec
Q 008619 89 LPTIITSN 96 (559)
Q Consensus 89 iPVImLSa 96 (559)
+-+|+..+
T Consensus 77 ~d~vi~~a 84 (313)
T 1qyd_A 77 VDVVISAL 84 (313)
T ss_dssp CSEEEECC
T ss_pred CCEEEECC
Confidence 55555443
No 428
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.37 E-value=60 Score=25.13 Aligned_cols=50 Identities=20% Similarity=0.349 Sum_probs=33.9
Q ss_pred CceecCHHHHHHHHHHHHHhCCCCCCChHHHhhcCCCCCCHHHHHHhhhhhhhhhcc
Q 008619 318 MKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRH 374 (559)
Q Consensus 318 ~r~~Wt~~lh~~Fv~av~~lg~~~a~pk~il~~m~v~~lt~~~v~shlQkyr~~~~~ 374 (559)
.+-.||+|=|+.|.+|+.+.|-+= ..|-..| |++-|..+|. +-|-+.++.
T Consensus 8 ~~~~WT~eE~~~Fe~~l~~yGKdf---~~I~~~~-v~~Kt~~~~v---~fYY~wKkt 57 (63)
T 2yqk_A 8 IEKCWTEDEVKRFVKGLRQYGKNF---FRIRKEL-LPNKETGELI---TFYYYWKKT 57 (63)
T ss_dssp CCCSCCHHHHHHHHHHHHHTCSCH---HHHHHHS-CTTSCHHHHH---HHHHHHHCS
T ss_pred CCCCcCHHHHHHHHHHHHHhCccH---HHHHHHH-cCCCcHHHHH---HHHhcccCC
Confidence 356999999999999999999541 2333211 5667777764 556555554
No 429
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=24.34 E-value=1e+02 Score=28.12 Aligned_cols=21 Identities=10% Similarity=0.132 Sum_probs=13.7
Q ss_pred HHHHHHHhhcCCCCeeEEEEecC
Q 008619 50 ENEALSAFSDKPENFHVAIVEVT 72 (559)
Q Consensus 50 ~~eAL~~Lre~~~~pDLVIvDv~ 72 (559)
..++++.+.. ..||+||+|.-
T Consensus 120 l~~~l~~l~~--~~yD~viiD~p 140 (254)
T 3kjh_A 120 LGSVVSALFL--DKKEAVVMDMG 140 (254)
T ss_dssp HHHHHHHHHH--TCCSEEEEEEC
T ss_pred HHHHHHHhcc--CCCCEEEEeCC
Confidence 4445555522 47999999985
No 430
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=24.20 E-value=1.1e+02 Score=32.75 Aligned_cols=106 Identities=14% Similarity=0.134 Sum_probs=62.1
Q ss_pred cEEEEE-eCCHHHHHHHHHHHhhCCCE--EEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CCcEEE
Q 008619 18 LRVLLL-DQDSSAAAELKFKLEAMDYI--VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTII 93 (559)
Q Consensus 18 lrVLIV-DDD~~~~~~L~~~L~~~gy~--V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-diPVIm 93 (559)
.+++|+ ..+......+.......+-. +....+..+.-.++.. .|++++=-. -+ .-|+-+++.+. .+|||+
T Consensus 357 ~~l~l~G~G~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----aD~~v~PS~-~E-~fgl~~lEAma~G~PvI~ 430 (536)
T 3vue_A 357 VQIVLLGTGKKKFEKLLKSMEEKYPGKVRAVVKFNAPLAHLIMAG----ADVLAVPSR-FE-PCGLIQLQGMRYGTPCAC 430 (536)
T ss_dssp CEEEEECCBCHHHHHHHHHHHHHSTTTEEEECSCCHHHHHHHHHH----CSEEEECCS-CC-SSCSHHHHHHHTTCCEEE
T ss_pred CeEEEEeccCchHHHHHHHHHhhcCCceEEEEeccHHHHHHHHHh----hheeecccc-cC-CCCHHHHHHHHcCCCEEE
Confidence 344433 34444444555544444322 3333344444444444 577776433 24 45777788775 899875
Q ss_pred EecCCCHHHHHHHHHcCCCEE----------EeCCCCHHHHHHHHHHHHH
Q 008619 94 TSNIHCLSTMMKCIALGAVEF----------LRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 94 LSa~~d~e~v~kAi~~GA~DY----------LvKPis~eeL~~iIq~vlr 133 (559)
|..+ -+.+.+..|.++| +..|.+.++|..+|++++.
T Consensus 431 -s~~g---G~~e~V~dg~~G~~~~~~~~~g~l~~~~d~~~la~ai~ral~ 476 (536)
T 3vue_A 431 -ASTG---GLVDTVIEGKTGFHMGRLSVDCKVVEPSDVKKVAATLKRAIK 476 (536)
T ss_dssp -CSCT---HHHHHCCBTTTEEECCCCCSCTTCCCHHHHHHHHHHHHHHHH
T ss_pred -cCCC---CchheeeCCCCccccccCCCceeEECCCCHHHHHHHHHHHHH
Confidence 3332 3455678888888 5566778889988887764
No 431
>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A
Probab=24.05 E-value=1.1e+02 Score=30.97 Aligned_cols=53 Identities=11% Similarity=0.122 Sum_probs=36.2
Q ss_pred HHHHHHcC---CCcEEEEe--cCCCHHHHHHHHHcCCCEEEeC-----CCCHHHHHHHHHHHH
Q 008619 80 FKFLETAK---DLPTIITS--NIHCLSTMMKCIALGAVEFLRK-----PLSEDKLRNLWQHVV 132 (559)
Q Consensus 80 ~eLLe~Ir---diPVImLS--a~~d~e~v~kAi~~GA~DYLvK-----Pis~eeL~~iIq~vl 132 (559)
+++++.++ ++|||+++ .-.+.+.+.++++.||++.++= --++......+..++
T Consensus 187 ~elI~~Ike~~~IPVV~IAnGGI~TpedA~~~le~GaDGVmVGrAI~~s~DP~~~Akafv~Av 249 (291)
T 3o07_A 187 VSLLKDVLEKGKLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKSSNPVRLATAVVEAT 249 (291)
T ss_dssp HHHHHHHHHHTSCSSCEEBCSSCCSHHHHHHHHHTTCSCEEECGGGGGSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCEEEecCCCCCCHHHHHHHHHhCCCEEEEchHHhCCCCHHHHHHHHHHHH
Confidence 56666664 69999873 3347889999999999999874 333555554444444
No 432
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=24.04 E-value=1e+02 Score=25.04 Aligned_cols=46 Identities=15% Similarity=0.169 Sum_probs=36.7
Q ss_pred ecCHHHHHHHHHHHHHhCCCCCCChHHHhhc-CCCCCCHHHHHHhhhhh
Q 008619 321 DWTPELHKKFVQAVEQLGVDQAIPSRILELM-KVEGLTRHNVASHLQKY 368 (559)
Q Consensus 321 ~Wt~~lh~~Fv~av~~lg~~~a~pk~il~~m-~v~~lt~~~v~shlQky 368 (559)
.||.+=.+.|.+|+..++. .+|-+--.+- -|+|=|.++|..|-+..
T Consensus 10 ~WT~eE~k~fe~ALa~~~~--~tp~rWe~IA~~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 10 EWNEKELQKLHCAFASLPK--HKPGFWSEVAAAVGSRSPEECQRKYMEN 56 (73)
T ss_dssp CCCHHHHHHHHHHHHHSCS--SSSSHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHCCC--CCccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 5999999999999999874 4788765543 57899999998775544
No 433
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=24.02 E-value=78 Score=29.56 Aligned_cols=63 Identities=11% Similarity=-0.005 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhhCCCEEEEECCH-----HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEEEEecCC
Q 008619 28 SAAAELKFKLEAMDYIVSTFYNE-----NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSNIH 98 (559)
Q Consensus 28 ~~~~~L~~~L~~~gy~V~ta~~~-----~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVImLSa~~ 98 (559)
.+...++..+.+.||.+..+... .+.++.+.+ ..+|-||+... . ..+.++. ..+|||++....
T Consensus 22 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiI~~~~--~---~~~~~~~-~~iPvV~~~~~~ 89 (280)
T 3gyb_A 22 DLIQSLSDVLTPKGYRLSVIDSLTSQAGTDPITSALS--MRPDGIIIAQD--I---PDFTVPD-SLPPFVIAGTRI 89 (280)
T ss_dssp HHHHHHHHHHGGGTCEEEEECSSSSCSSSCHHHHHHT--TCCSEEEEESC--C------------CCCEEEESCCC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCchHHHHHHHHHHh--CCCCEEEecCC--C---ChhhHhh-cCCCEEEECCCC
Confidence 45566777778889998866543 346777777 67998883332 2 1233344 789999987654
No 434
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=23.98 E-value=1.6e+02 Score=29.36 Aligned_cols=33 Identities=18% Similarity=0.233 Sum_probs=23.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECC
Q 008619 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYN 49 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~ 49 (559)
.+++|||+.... ....+...+++.||+|+.+..
T Consensus 10 ~~~~ili~g~g~-~~~~~~~a~~~~G~~v~~~~~ 42 (391)
T 1kjq_A 10 AATRVMLLGSGE-LGKEVAIECQRLGVEVIAVDR 42 (391)
T ss_dssp TCCEEEEESCSH-HHHHHHHHHHTTTCEEEEEES
T ss_pred CCCEEEEECCCH-HHHHHHHHHHHcCCEEEEEEC
Confidence 347999998875 445566677788999885543
No 435
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=23.97 E-value=64 Score=32.13 Aligned_cols=54 Identities=22% Similarity=0.260 Sum_probs=33.4
Q ss_pred CCcEEEEEeCCH---HHHHHHHHHHhhCCCEEEEEC---CHH----HHHHHhhcCCCCeeEEEEec
Q 008619 16 KGLRVLLLDQDS---SAAAELKFKLEAMDYIVSTFY---NEN----EALSAFSDKPENFHVAIVEV 71 (559)
Q Consensus 16 ~glrVLIVDDD~---~~~~~L~~~L~~~gy~V~ta~---~~~----eAL~~Lre~~~~pDLVIvDv 71 (559)
.+.+|+++|.|. .....+.......|+.+.... +.. ++++.++. ..+|+||+|.
T Consensus 125 ~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~~--~~~D~ViIDT 188 (297)
T 1j8m_F 125 KGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLS--EKMEIIIVDT 188 (297)
T ss_dssp TTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHHH--TTCSEEEEEC
T ss_pred CCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHHh--CCCCEEEEeC
Confidence 356899999883 333444444445566665432 332 45555554 5699999999
No 436
>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}
Probab=23.84 E-value=1.8e+02 Score=30.15 Aligned_cols=76 Identities=11% Similarity=0.156 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC--CCcEEEEecCCCHHHHH
Q 008619 27 SSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNIHCLSTMM 104 (559)
Q Consensus 27 ~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir--diPVImLSa~~d~e~v~ 104 (559)
......|.+..+..|..+.+..-..+++++|.+ ..+|++=+ .-.+ +.-+.||+.+. ..|||+=|+-...+.+.
T Consensus 77 ~e~~~~L~~~~~~~Gi~~~st~fD~~svd~l~~--~~v~~~KI--~S~~-~~N~pLL~~va~~gKPviLstGmstl~Ei~ 151 (350)
T 3g8r_A 77 PEQMQKLVAEMKANGFKAICTPFDEESVDLIEA--HGIEIIKI--ASCS-FTDWPLLERIARSDKPVVASTAGARREDID 151 (350)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHH--TTCCEEEE--CSSS-TTCHHHHHHHHTSCSCEEEECTTCCHHHHH
T ss_pred HHHHHHHHHHHHHcCCcEEeccCCHHHHHHHHH--cCCCEEEE--Cccc-ccCHHHHHHHHhhCCcEEEECCCCCHHHHH
Confidence 345567777888889998866666777888877 44555444 3345 77899999985 79999888877766665
Q ss_pred HHH
Q 008619 105 KCI 107 (559)
Q Consensus 105 kAi 107 (559)
.|+
T Consensus 152 ~Av 154 (350)
T 3g8r_A 152 KVV 154 (350)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 437
>3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica}
Probab=23.77 E-value=3.8e+02 Score=25.46 Aligned_cols=37 Identities=11% Similarity=0.055 Sum_probs=28.2
Q ss_pred CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHH
Q 008619 88 DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNL 127 (559)
Q Consensus 88 diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~i 127 (559)
.++|.+.|. .+.+.+.+++..|++++++- .++.+...
T Consensus 210 G~~v~~WTv-n~~~~~~~l~~~GVdgIiTD--~P~~~~~~ 246 (252)
T 3qvq_A 210 GYKVLAFTI-NDESLALKLYNQGLDAVFSD--YPQKIQSA 246 (252)
T ss_dssp TCEEEEECC-CCHHHHHHHHHTTCCEEEES--SHHHHHHH
T ss_pred CCEEEEEcC-CCHHHHHHHHHcCCCEEEeC--CHHHHHHH
Confidence 688888887 46778889999999999984 45555544
No 438
>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase, mixed alpha/ protein, N-terminal rossmann-fold like; 2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1
Probab=23.75 E-value=1.3e+02 Score=30.09 Aligned_cols=42 Identities=12% Similarity=0.276 Sum_probs=30.0
Q ss_pred HHHHHhhcCCCCeeEEEEecCCCCCCCHHH-HH-----H-----HcCCCcEEEEecC
Q 008619 52 EALSAFSDKPENFHVAIVEVTTSNTDGSFK-FL-----E-----TAKDLPTIITSNI 97 (559)
Q Consensus 52 eAL~~Lre~~~~pDLVIvDv~MPd~mdG~e-LL-----e-----~IrdiPVImLSa~ 97 (559)
-||..| . ..|||||+.++... .-|.+ ++ . .+..+|-|.+|..
T Consensus 76 lal~~l-~--~~PDLVvSGIN~G~-Nlg~d~v~ySGTVgAA~Ea~~~GiPaIA~S~~ 128 (280)
T 1l5x_A 76 LATFGL-G--RKYDIVLSGINLGD-NTSLQVILSSGTLGAAFQAALLGIPALAYSAY 128 (280)
T ss_dssp HHHHHH-T--SCCSEEEEEEEEBC-CCSHHHHTTCHHHHHHHHHHHTTCCEEEEEEC
T ss_pred HHHhcC-C--CCCCEEEECCccCC-cCCccccccchhHHHHHHHHHcCCCeEEEEcc
Confidence 356666 4 68999999999887 66766 32 1 1238999999874
No 439
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=23.74 E-value=1.5e+02 Score=26.69 Aligned_cols=98 Identities=11% Similarity=0.085 Sum_probs=60.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CCcEEEE
Q 008619 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIIT 94 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-diPVImL 94 (559)
.+ +|-++..... ...|...+..++.+.+..+++++|.. .+.|+++.|.. ....+++... ++.++-.
T Consensus 106 ~g-~igv~~g~~~-----~~~l~~~~~~~~~~~~~~~~~~~L~~--GrvDa~i~~~~-----~~~~~~~~~~~~~~~~~~ 172 (232)
T 3i6v_A 106 SG-IVAAQTATIQ-----AGYIAESGATLVEFATPEETIAAVRN--GEADAVFADRD-----YLVPIVAESGGELMFVGD 172 (232)
T ss_dssp TS-EEEEETTSHH-----HHHHHHSSSEEEEESSHHHHHHHHHT--TSSSEEEEEHH-----HHHHHHHHTTTSSEEEEE
T ss_pred CC-CEEEecCchH-----HHHHHhcCCeEEEeCCHHHHHHHHHc--CCcCEEEEChH-----HHHHHHHhCCCCeEEecC
Confidence 46 8888776643 23333338899999999999999999 88999999862 2334444442 3333321
Q ss_pred ecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHh
Q 008619 95 SNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFN 137 (559)
Q Consensus 95 Sa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~~ 137 (559)
..... ....+.+.. ...+|+..+...+.....
T Consensus 173 ~~~~~----------~~~~~~~~k-~~~~l~~~ln~~l~~l~~ 204 (232)
T 3i6v_A 173 DVPLG----------GGVGMGLRE-SDGELRGKFDAAITSMKE 204 (232)
T ss_dssp EEECS----------SCEEEEECT-TCHHHHHHHHHHHHHHHH
T ss_pred CCCCC----------CcEEEEEeC-CCHHHHHHHHHHHHHHHH
Confidence 11100 112233333 356788888888876544
No 440
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=23.72 E-value=62 Score=32.20 Aligned_cols=56 Identities=9% Similarity=0.115 Sum_probs=0.0
Q ss_pred CHHHHHHHcC----CCcEEEEe------cCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008619 78 GSFKFLETAK----DLPTIITS------NIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 78 dG~eLLe~Ir----diPVImLS------a~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
+.|++++.+| ++|||+|+ .++-...+.++.++|++++|+--+..++.......+-+
T Consensus 83 ~~~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee~~~~~~~~~~ 148 (271)
T 3nav_A 83 ICFELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQPFVAAAEK 148 (271)
T ss_dssp HHHHHHHHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
No 441
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=23.71 E-value=2.3e+02 Score=30.72 Aligned_cols=76 Identities=12% Similarity=0.142 Sum_probs=50.9
Q ss_pred HHHHHHHhhcCCCCeeEEE-EecCCCCCCCH--HHHHHHcC---CCcEEEEecCCCHHHHHHHHH-cCCCEEEeC-----
Q 008619 50 ENEALSAFSDKPENFHVAI-VEVTTSNTDGS--FKFLETAK---DLPTIITSNIHCLSTMMKCIA-LGAVEFLRK----- 117 (559)
Q Consensus 50 ~~eAL~~Lre~~~~pDLVI-vDv~MPd~mdG--~eLLe~Ir---diPVImLSa~~d~e~v~kAi~-~GA~DYLvK----- 117 (559)
..+..+.+.+ ..++.|| .|+.-.+...| +++++.+. .+|||.--.-.+.+.+.++++ .||++.++-
T Consensus 454 ~~e~a~~~~~--~Ga~~il~t~~~~dG~~~G~d~~li~~l~~~~~iPVIasGGi~s~~d~~~~~~~~G~~gvivg~a~~~ 531 (555)
T 1jvn_A 454 VWELTRACEA--LGAGEILLNCIDKDGSNSGYDLELIEHVKDAVKIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHR 531 (555)
T ss_dssp HHHHHHHHHH--TTCCEEEECCGGGTTTCSCCCHHHHHHHHHHCSSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHHHT
T ss_pred HHHHHHHHHH--cCCCEEEEeCCCCCCCCCCCCHHHHHHHHHhCCccEEEECCCCCHHHHHHHHHhcCChHHHHHHHHHc
Confidence 4455555555 4455444 45543331233 67777775 799998777889999999998 899998775
Q ss_pred -CCCHHHHHHH
Q 008619 118 -PLSEDKLRNL 127 (559)
Q Consensus 118 -Pis~eeL~~i 127 (559)
++...+++..
T Consensus 532 ~~~~~~e~~~~ 542 (555)
T 1jvn_A 532 GEFTVNDVKEY 542 (555)
T ss_dssp TSCCHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 6666666653
No 442
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=23.69 E-value=2.3e+02 Score=26.33 Aligned_cols=67 Identities=13% Similarity=0.148 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhhC-CCEEEEEC------CHH---HHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC--CCcEEEEe
Q 008619 28 SAAAELKFKLEAM-DYIVSTFY------NEN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITS 95 (559)
Q Consensus 28 ~~~~~L~~~L~~~-gy~V~ta~------~~~---eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir--diPVImLS 95 (559)
.+...++..++.. ||.+..+. +.+ +.++.+.. ..+|-||+--...+ ...++++.+. .+|||++.
T Consensus 26 ~~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgiii~~~~~~--~~~~~~~~~~~~~iPvV~~~ 101 (304)
T 3gbv_A 26 DVQKGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIE--EQPDGVMFAPTVPQ--YTKGFTDALNELGIPYIYID 101 (304)
T ss_dssp HHHHHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHT--TCCSEEEECCSSGG--GTHHHHHHHHHHTCCEEEES
T ss_pred HHHHHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHh--cCCCEEEECCCChH--HHHHHHHHHHHCCCeEEEEe
Confidence 3345566667777 88766431 443 34556666 67998887543222 1234555554 79999887
Q ss_pred cCC
Q 008619 96 NIH 98 (559)
Q Consensus 96 a~~ 98 (559)
...
T Consensus 102 ~~~ 104 (304)
T 3gbv_A 102 SQI 104 (304)
T ss_dssp SCC
T ss_pred CCC
Confidence 643
No 443
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=23.45 E-value=2.5e+02 Score=28.12 Aligned_cols=89 Identities=9% Similarity=0.037 Sum_probs=55.8
Q ss_pred EEEEeCCHHH----HHHHHHHHhhCCC--EEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHH-HHHHHcC-CCcE
Q 008619 20 VLLLDQDSSA----AAELKFKLEAMDY--IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSF-KFLETAK-DLPT 91 (559)
Q Consensus 20 VLIVDDD~~~----~~~L~~~L~~~gy--~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~-eLLe~Ir-diPV 91 (559)
|+|.|.+-.. .+.++..-+..+. ..+.+.+.+++.+.+.. ..|+|.+|-.-++ .+ ++.+.+. +++
T Consensus 182 vlikdnhi~~~Gti~~ai~~~r~~~~~~kI~vev~tlee~~eA~~a---GaD~I~ld~~~~e---~l~~~v~~~~~~~~- 254 (296)
T 1qap_A 182 FLIKENHIIASGSVRQAVEKAFWLHPDVPVEVEVENLDELDDALKA---GADIIMLDNFNTD---QMREAVKRVNGQAR- 254 (296)
T ss_dssp EEECHHHHHHHSSHHHHHHHHHHHSTTSCEEEEESSHHHHHHHHHT---TCSEEEESSCCHH---HHHHHHHTTCTTCC-
T ss_pred EEEEcCCeeccCCHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHc---CCCEEEECCCCHH---HHHHHHHHhCCCCe-
Confidence 5666665554 3444444444444 44578888888887765 4899999862211 22 2233333 455
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEE
Q 008619 92 IITSNIHCLSTMMKCIALGAVEFL 115 (559)
Q Consensus 92 ImLSa~~d~e~v~kAi~~GA~DYL 115 (559)
|..|+.-+.+.+.+..+.||+.+-
T Consensus 255 I~ASGGIt~~~i~~~a~~GvD~is 278 (296)
T 1qap_A 255 LEVSGNVTAETLREFAETGVDFIS 278 (296)
T ss_dssp EEECCCSCHHHHHHHHHTTCSEEE
T ss_pred EEEECCCCHHHHHHHHHcCCCEEE
Confidence 456777799999999999996553
No 444
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=23.45 E-value=1.7e+02 Score=29.00 Aligned_cols=55 Identities=16% Similarity=0.172 Sum_probs=37.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhh--CCC---EEE-EECCHHHHHHHhhcCCCCeeEEEEecCCC
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEA--MDY---IVS-TFYNENEALSAFSDKPENFHVAIVEVTTS 74 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~--~gy---~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MP 74 (559)
..+|..||-|+...+..++.+.. .++ +|. .+.++.+.+.. ....||+||+|...+
T Consensus 119 ~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~---~~~~fD~Ii~d~~~~ 179 (304)
T 2o07_A 119 VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQ---NQDAFDVIITDSSDP 179 (304)
T ss_dssp CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHT---CSSCEEEEEEECC--
T ss_pred CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhh---CCCCceEEEECCCCC
Confidence 36899999999999988888754 122 233 56777665543 225799999998654
No 445
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=23.41 E-value=5.5e+02 Score=25.55 Aligned_cols=86 Identities=14% Similarity=-0.007 Sum_probs=53.4
Q ss_pred HHHHHHHHHhhCCCEEE--EE---CCHHHHHHHhhcCCCCeeEEEEecC--------------------CCCCCCHHHHH
Q 008619 29 AAAELKFKLEAMDYIVS--TF---YNENEALSAFSDKPENFHVAIVEVT--------------------TSNTDGSFKFL 83 (559)
Q Consensus 29 ~~~~L~~~L~~~gy~V~--ta---~~~~eAL~~Lre~~~~pDLVIvDv~--------------------MPd~mdG~eLL 83 (559)
+.+.++.+-+..+.-|. .+ .+.++|...... ..|.|++.-+ +.......+.+
T Consensus 166 ~~~~i~~vr~~~~~Pv~vK~~~~~~~~~~a~~a~~~---Gad~I~v~~~ggt~~~~~e~~r~~~~~~~~~~~g~~~~~~l 242 (349)
T 1p0k_A 166 ALKRIEQICSRVSVPVIVKEVGFGMSKASAGKLYEA---GAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASL 242 (349)
T ss_dssp HHHHHHHHHHHCSSCEEEEEESSCCCHHHHHHHHHH---TCSEEEEEC---------------CCGGGGTTCSCCHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHc---CCCEEEEcCCCCcchhhHHHhhcccchhhhhccCccHHHHH
Confidence 34445544444444333 23 466666544433 5787777422 11103345555
Q ss_pred HHc----CCCcEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008619 84 ETA----KDLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (559)
Q Consensus 84 e~I----rdiPVImLSa~~d~e~v~kAi~~GA~DYLvK 117 (559)
..+ .++|||....-.+.+.+.+++.+||+.+++-
T Consensus 243 ~~v~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~iG 280 (349)
T 1p0k_A 243 AEIRSEFPASTMIASGGLQDALDVAKAIALGASCTGMA 280 (349)
T ss_dssp HHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHhcCCCeEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 544 2799999999999999999999999999875
No 446
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}
Probab=23.32 E-value=1.1e+02 Score=28.39 Aligned_cols=66 Identities=9% Similarity=0.027 Sum_probs=45.2
Q ss_pred EECCHHHHHHHhhcCCCCeeEEEEecCCCCC-------CCHHHHHHHc-----CCCcEEEEecCCCHHHHHHHHHcCCCE
Q 008619 46 TFYNENEALSAFSDKPENFHVAIVEVTTSNT-------DGSFKFLETA-----KDLPTIITSNIHCLSTMMKCIALGAVE 113 (559)
Q Consensus 46 ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~-------mdG~eLLe~I-----rdiPVImLSa~~d~e~v~kAi~~GA~D 113 (559)
.|.+.+++.... . ..|.|+++--.|.. .-|++.++.+ .++|||.+-+-. .+.+.++++.||++
T Consensus 94 s~~t~~e~~~A~-~---GaDyv~~g~vf~t~sk~~~~~~~g~~~l~~~~~~~~~~iPviaiGGI~-~~nv~~~~~~Ga~g 168 (210)
T 3ceu_A 94 SCHSVEEVKNRK-H---FYDYVFMSPIYDSISKVNYYSTYTAEELREAQKAKIIDSKVMALGGIN-EDNLLEIKDFGFGG 168 (210)
T ss_dssp EECSHHHHHTTG-G---GSSEEEECCCC---------CCCCHHHHHHHHHTTCSSTTEEEESSCC-TTTHHHHHHTTCSE
T ss_pred ecCCHHHHHHHh-h---CCCEEEECCcCCCCCCCCCCCCCCHHHHHHHHHhcCCCCCEEEECCCC-HHHHHHHHHhCCCE
Confidence 778888876654 3 47999876544320 1255666554 369999876655 67788999999998
Q ss_pred EEe
Q 008619 114 FLR 116 (559)
Q Consensus 114 YLv 116 (559)
+-+
T Consensus 169 Vav 171 (210)
T 3ceu_A 169 AVV 171 (210)
T ss_dssp EEE
T ss_pred EEE
Confidence 865
No 447
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=23.29 E-value=1.9e+02 Score=28.24 Aligned_cols=64 Identities=11% Similarity=0.025 Sum_probs=38.5
Q ss_pred HHHHHHHHhhCCCEEEEEC-----CHHHHHHHhhcCCCCeeEEEEec-CCCCCCCHHHHHHHcCCCcEEEEecC
Q 008619 30 AAELKFKLEAMDYIVSTFY-----NENEALSAFSDKPENFHVAIVEV-TTSNTDGSFKFLETAKDLPTIITSNI 97 (559)
Q Consensus 30 ~~~L~~~L~~~gy~V~ta~-----~~~eAL~~Lre~~~~pDLVIvDv-~MPd~mdG~eLLe~IrdiPVImLSa~ 97 (559)
.+.++..++..||.+..+. +..++++.+.+ ..+|.||+-- .+.+ .-.++.+...++|+|++...
T Consensus 26 ~~Gi~~~~~~~g~~~~~~~~~~~~~~~~~l~~l~~--~~~dgIi~~~~~~~~--~~~~~a~~~p~~p~v~id~~ 95 (318)
T 2fqx_A 26 WEGISRFAQENNAKCKYVTASTDAEYVPSLSAFAD--ENMGLVVACGSFLVE--AVIETSARFPKQKFLVIDAV 95 (318)
T ss_dssp HHHHHHHHHHTTCEEEEEECCSGGGHHHHHHHHHH--TTCSEEEEESTTTHH--HHHHHHHHCTTSCEEEESSC
T ss_pred HHHHHHHHHHhCCeEEEEeCCCHHHHHHHHHHHHH--cCCCEEEECChhHHH--HHHHHHHHCCCCEEEEEcCc
Confidence 4556677778899877543 23356666766 6799888732 2211 11223333348999988754
No 448
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=23.11 E-value=97 Score=31.85 Aligned_cols=73 Identities=12% Similarity=0.064 Sum_probs=50.7
Q ss_pred HHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Q 008619 50 ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLW 128 (559)
Q Consensus 50 ~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iI 128 (559)
.++..+++.. .|+.++=-. .+ .-|+-+++.+. .+|||. +..+.. +.+..|.+++|+.|-+.++|.++|
T Consensus 305 ~~~l~~~~~~----adv~v~pS~-~E-~~g~~~lEAmA~G~PVV~-~~~g~~----e~v~~~~~G~lv~~~d~~~la~ai 373 (413)
T 2x0d_A 305 LEDYADLLKR----SSIGISLMI-SP-HPSYPPLEMAHFGLRVIT-NKYENK----DLSNWHSNIVSLEQLNPENIAETL 373 (413)
T ss_dssp HHHHHHHHHH----CCEEECCCS-SS-SCCSHHHHHHHTTCEEEE-ECBTTB----CGGGTBTTEEEESSCSHHHHHHHH
T ss_pred HHHHHHHHHh----CCEEEEecC-CC-CCCcHHHHHHhCCCcEEE-eCCCcc----hhhhcCCCEEEeCCCCHHHHHHHH
Confidence 4555556655 477665322 23 34666777764 899997 554432 345678899999999999999999
Q ss_pred HHHHH
Q 008619 129 QHVVH 133 (559)
Q Consensus 129 q~vlr 133 (559)
..++.
T Consensus 374 ~~ll~ 378 (413)
T 2x0d_A 374 VELCM 378 (413)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 88875
No 449
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=23.03 E-value=2.1e+02 Score=28.92 Aligned_cols=57 Identities=12% Similarity=0.106 Sum_probs=40.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhC--CC---EEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCC
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAM--DY---IVS-TFYNENEALSAFSDKPENFHVAIVEVTTSN 75 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~--gy---~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd 75 (559)
..+|..||-++...+..++.+... ++ +|. ...++.+.+..+.. ..||+||+|...|.
T Consensus 144 ~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~--~~fDlIi~d~~~p~ 206 (334)
T 1xj5_A 144 IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAE--GSYDAVIVDSSDPI 206 (334)
T ss_dssp CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCT--TCEEEEEECCCCTT
T ss_pred CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccC--CCccEEEECCCCcc
Confidence 468999999999999888877542 22 233 56777766544333 57999999986443
No 450
>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii}
Probab=23.00 E-value=2.9e+02 Score=26.02 Aligned_cols=81 Identities=15% Similarity=0.118 Sum_probs=48.2
Q ss_pred HHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCC------------C-CCCHHHHHHHcC-CCcEEEEecCC
Q 008619 34 KFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTS------------N-TDGSFKFLETAK-DLPTIITSNIH 98 (559)
Q Consensus 34 ~~~L~~~gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MP------------d-~mdG~eLLe~Ir-diPVImLSa~~ 98 (559)
.......|..+. ++.+..++.+ +.. -..++|=..-... + .....++++.+. ++||++-.+-.
T Consensus 104 ~~~a~~~Gl~~iv~v~~~~e~~~-~~~--~~~~~i~~~~~~~iGtG~~~~t~~~~~~~~~~~~ir~~~~~~~ii~ggGI~ 180 (219)
T 2h6r_A 104 INKCKNLGLETIVCTNNINTSKA-VAA--LSPDCIAVEPPELIGTGIPVSKANPEVVEGTVRAVKEINKDVKVLCGAGIS 180 (219)
T ss_dssp HHHHHHHTCEEEEEESSSHHHHH-HTT--TCCSEEEECCCC--------------CSHHHHHHHHHHCTTCEEEECSSCC
T ss_pred HHHHHHCCCeEEEEeCCchHHHH-HHh--CCCCEEEEEeccccccCCCCccCCHHHHHHHHHHHHhccCCCeEEEEeCcC
Confidence 333345588766 5666555433 333 2345554443332 1 001233444444 68888888888
Q ss_pred CHHHHHHHHHcCCCEEEeC
Q 008619 99 CLSTMMKCIALGAVEFLRK 117 (559)
Q Consensus 99 d~e~v~kAi~~GA~DYLvK 117 (559)
..+.+..+...||+++|+=
T Consensus 181 ~~~~~~~~~~~gaDgvlVG 199 (219)
T 2h6r_A 181 KGEDVKAALDLGAEGVLLA 199 (219)
T ss_dssp SHHHHHHHHTTTCCCEEES
T ss_pred cHHHHHHHhhCCCCEEEEc
Confidence 8888888999999999873
No 451
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=22.86 E-value=68 Score=27.94 Aligned_cols=72 Identities=15% Similarity=0.157 Sum_probs=46.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhc--CCCCeeEEEEecCCCCCCCHHHHHHHcC--CCcEE
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSD--KPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTI 92 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre--~~~~pDLVIvDv~MPd~mdG~eLLe~Ir--diPVI 92 (559)
.++|.||.|..+ ..-++..|+++..+.+.+++.+.+++ . ..+.+|++.-++.+ .-. +.++.++ ..|+|
T Consensus 2 ~mKiaVIGD~Dt-----v~GFrLaGie~~~v~~~ee~~~~~~~l~~-~digIIlIte~ia~-~i~-~~i~~~~~~~~P~I 73 (115)
T 3aon_B 2 TYKIGVVGDKDS-----VSPFRLFGFDVQHGTTKTEIRKTIDEMAK-NEYGVIYITEQCAN-LVP-ETIERYKGQLTPAI 73 (115)
T ss_dssp EEEEEEESCHHH-----HGGGGGGTCEEECCCSHHHHHHHHHHHHH-TTEEEEEEEHHHHT-TCH-HHHHHHHTSSSCEE
T ss_pred ceEEEEEECHHH-----HHHHHHcCCeEEEeCCHHHHHHHHHHHHh-cCceEEEEeHHHHH-HhH-HHHHHHhCCCCCEE
Confidence 368999998322 23455568888888887777665554 2 37889998877665 322 3444443 47887
Q ss_pred EEec
Q 008619 93 ITSN 96 (559)
Q Consensus 93 mLSa 96 (559)
+.-.
T Consensus 74 veIP 77 (115)
T 3aon_B 74 ILIP 77 (115)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 7654
No 452
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=22.82 E-value=2.4e+02 Score=26.99 Aligned_cols=58 Identities=9% Similarity=0.107 Sum_probs=39.2
Q ss_pred HHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC---CCcEEEEecCCC--HHH----HHHHHHcCCCEEEe
Q 008619 52 EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTIITSNIHC--LST----MMKCIALGAVEFLR 116 (559)
Q Consensus 52 eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir---diPVImLSa~~d--~e~----v~kAi~~GA~DYLv 116 (559)
++...+.+ ...|+|.+.. + .+++.++.+. .+|||+..+-.. .+. +.+++++||+++.+
T Consensus 170 ~~a~~a~~--~Gad~i~~~~--~---~~~~~l~~i~~~~~ipvva~GGi~~~~~~~~~~~~~~~~~~Ga~gv~v 236 (273)
T 2qjg_A 170 HAARLGAE--LGADIVKTSY--T---GDIDSFRDVVKGCPAPVVVAGGPKTNTDEEFLQMIKDAMEAGAAGVAV 236 (273)
T ss_dssp HHHHHHHH--TTCSEEEECC--C---SSHHHHHHHHHHCSSCEEEECCSCCSSHHHHHHHHHHHHHHTCSEEEC
T ss_pred HHHHHHHH--cCCCEEEECC--C---CCHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEe
Confidence 33344455 5689888874 2 3566666664 799999877663 444 66777899998875
No 453
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=22.77 E-value=1.4e+02 Score=27.40 Aligned_cols=66 Identities=6% Similarity=0.014 Sum_probs=41.1
Q ss_pred HHHHHHHHHhhCCCEEEEEC-----CHH---HHHHHhhcCCCC-eeEEEEecCCCCCCCHHHHHHHcC--CCcEEEEecC
Q 008619 29 AAAELKFKLEAMDYIVSTFY-----NEN---EALSAFSDKPEN-FHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (559)
Q Consensus 29 ~~~~L~~~L~~~gy~V~ta~-----~~~---eAL~~Lre~~~~-pDLVIvDv~MPd~mdG~eLLe~Ir--diPVImLSa~ 97 (559)
+...++..++..||.+..+. +.+ ++++.+.. .. +|-||+.-.... ...+.++.+. .+|+|++...
T Consensus 18 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~--~~~vdgii~~~~~~~--~~~~~~~~~~~~~ipvV~~~~~ 93 (276)
T 3ksm_A 18 VYLGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLS--QAPPDALILAPNSAE--DLTPSVAQYRARNIPVLVVDSD 93 (276)
T ss_dssp HHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHH--HSCCSEEEECCSSTT--TTHHHHHHHHHTTCCEEEESSC
T ss_pred HHHHHHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHHH--hCCCCEEEEeCCCHH--HHHHHHHHHHHCCCcEEEEecC
Confidence 44556667777899988654 333 35555555 56 998888543222 2344555553 8999998654
Q ss_pred C
Q 008619 98 H 98 (559)
Q Consensus 98 ~ 98 (559)
.
T Consensus 94 ~ 94 (276)
T 3ksm_A 94 L 94 (276)
T ss_dssp C
T ss_pred C
Confidence 3
No 454
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=22.76 E-value=85 Score=31.63 Aligned_cols=55 Identities=9% Similarity=0.070 Sum_probs=39.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCC---EEE-EECCHHHHHHHhhcCCCCeeEEEEec
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAMDY---IVS-TFYNENEALSAFSDKPENFHVAIVEV 71 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy---~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv 71 (559)
+.+|..||-++...+..+..+...+. .+. .+.+..+.+..+......||+||+|.
T Consensus 175 ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~dP 233 (332)
T 2igt_A 175 GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTDP 233 (332)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEECC
Confidence 34899999999999988888876554 243 56677777654431115799999985
No 455
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=22.65 E-value=2.1e+02 Score=28.28 Aligned_cols=33 Identities=12% Similarity=-0.051 Sum_probs=19.6
Q ss_pred CcEEEEEeC----CHHHHHHHHHHHhhCCCEEEEECC
Q 008619 17 GLRVLLLDQ----DSSAAAELKFKLEAMDYIVSTFYN 49 (559)
Q Consensus 17 glrVLIVDD----D~~~~~~L~~~L~~~gy~V~ta~~ 49 (559)
|+|||++-- +..-...|.+.|.+.|++|+.++.
T Consensus 20 m~rIl~~~~~~~GHv~p~l~La~~L~~~Gh~V~v~~~ 56 (415)
T 3rsc_A 20 MAHLLIVNVASHGLILPTLTVVTELVRRGHRVSYVTA 56 (415)
T ss_dssp CCEEEEECCSCHHHHGGGHHHHHHHHHTTCEEEEEEC
T ss_pred CCEEEEEeCCCccccccHHHHHHHHHHCCCEEEEEeC
Confidence 467877742 222234466677777888775543
No 456
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=22.61 E-value=1.4e+02 Score=27.54 Aligned_cols=63 Identities=11% Similarity=0.026 Sum_probs=31.1
Q ss_pred HHHHHHHHHhhCCCEEEEECC------HHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC--CCcEEEEecC
Q 008619 29 AAAELKFKLEAMDYIVSTFYN------ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (559)
Q Consensus 29 ~~~~L~~~L~~~gy~V~ta~~------~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir--diPVImLSa~ 97 (559)
+...++..++..||.+..+.. ..+.++.+.. ..+|-||+--.... . ..++.+. .+|+|++...
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiI~~~~~~~-~---~~~~~~~~~~iPvV~~~~~ 87 (276)
T 2h0a_A 17 LVEGIEGVLLEQRYDLALFPILSLARLKRYLENTTLA--YLTDGLILASYDLT-E---RFEEGRLPTERPVVLVDAQ 87 (276)
T ss_dssp HHHHHHHHHGGGTCEEEECCCCSCCCCC-----------CCCSEEEEESCCCC----------CCSCSSCEEEESSC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCchhhHHHHHHHHHh--CCCCEEEEecCCCC-H---HHHHHHhhcCCCEEEEecc
Confidence 344556666778999886543 2346666666 67898777543222 1 4455554 6999988654
No 457
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=22.54 E-value=64 Score=31.90 Aligned_cols=48 Identities=17% Similarity=0.181 Sum_probs=37.0
Q ss_pred HHHHHHHcC-CCcEEEEec------CCCHHHHHHHHHcCCCEEEeCCCCHHHHHH
Q 008619 79 SFKFLETAK-DLPTIITSN------IHCLSTMMKCIALGAVEFLRKPLSEDKLRN 126 (559)
Q Consensus 79 G~eLLe~Ir-diPVImLSa------~~d~e~v~kAi~~GA~DYLvKPis~eeL~~ 126 (559)
.|++++.+| .+|+|+|+- ++-.....+|.++|++++|+--+..+|...
T Consensus 78 ~~~~~~~~r~~~Pivlm~Y~N~i~~~G~e~F~~~~~~aGvdG~IipDLP~eE~~~ 132 (252)
T 3tha_A 78 VFELLARIKTKKALVFMVYYNLIFSYGLEKFVKKAKSLGICALIVPELSFEESDD 132 (252)
T ss_dssp HHHHHHHCCCSSEEEEECCHHHHHHHCHHHHHHHHHHTTEEEEECTTCCGGGCHH
T ss_pred HHHHHHHHhcCCCEEEEeccCHHHHhhHHHHHHHHHHcCCCEEEeCCCCHHHHHH
Confidence 466677776 589999986 345567889999999999998787777443
No 458
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=22.49 E-value=1.3e+02 Score=28.29 Aligned_cols=63 Identities=13% Similarity=0.137 Sum_probs=37.3
Q ss_pred HHHHHHHHHhhCCCEEEEECC---H---HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEEEEecC
Q 008619 29 AAAELKFKLEAMDYIVSTFYN---E---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSNI 97 (559)
Q Consensus 29 ~~~~L~~~L~~~gy~V~ta~~---~---~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVImLSa~ 97 (559)
+...++..++..||.+..+.. . .+.++.+.. ..+|-||+-....+ ..-++.+ ..+|||++...
T Consensus 25 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiI~~~~~~~-~~~~~~l---~~iPvV~~~~~ 93 (288)
T 2qu7_A 25 VLTEISHECQKHHLHVAVASSEENEDKQQDLIETFVS--QNVSAIILVPVKSK-FQMKREW---LKIPIMTLDRE 93 (288)
T ss_dssp HHHHHHHHHGGGTCEEEEEECTTCHHHHHHHHHHHHH--TTEEEEEECCSSSC-CCCCGGG---GGSCEEEESCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHH--cCccEEEEecCCCC-hHHHHHh---cCCCEEEEecc
Confidence 344556666778998875542 2 235566666 67998887543322 2222222 67999988654
No 459
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=22.48 E-value=1.7e+02 Score=30.44 Aligned_cols=107 Identities=12% Similarity=0.005 Sum_probs=65.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCE---EEEEC--CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CCc
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAMDYI---VSTFY--NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLP 90 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~---V~ta~--~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-diP 90 (559)
..+++|+..+......|+..+...|.. |.... +.++....+.. .|++|+=... + -|..+++.+. .+|
T Consensus 406 ~~~l~i~G~~g~~~~~l~~~~~~~~l~~~~v~~~g~~~~~~~~~~~~~----adv~v~ps~~-~--~g~~~lEAma~G~P 478 (568)
T 2vsy_A 406 DSVLWLLSGPGEADARLRAFAHAQGVDAQRLVFMPKLPHPQYLARYRH----ADLFLDTHPY-N--AHTTASDALWTGCP 478 (568)
T ss_dssp TCEEEEECCSTTHHHHHHHHHHHTTCCGGGEEEECCCCHHHHHHHGGG----CSEEECCSSS-C--CSHHHHHHHHTTCC
T ss_pred CcEEEEecCCHHHHHHHHHHHHHcCCChhHEEeeCCCCHHHHHHHHhc----CCEEeeCCCC-C--CcHHHHHHHhCCCC
Confidence 467888883344567778888776653 55443 33566666666 5887754433 3 4777888774 899
Q ss_pred EEEEecCC---CHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008619 91 TIITSNIH---CLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 91 VImLSa~~---d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
||.+.... +.. ..-....|..+++.. +.++|.+.+..++.
T Consensus 479 vv~~~g~~~~s~~~-~~~l~~~g~~e~v~~--~~~~la~~i~~l~~ 521 (568)
T 2vsy_A 479 VLTTPGETFAARVA-GSLNHHLGLDEMNVA--DDAAFVAKAVALAS 521 (568)
T ss_dssp EEBCCCSSGGGSHH-HHHHHHHTCGGGBCS--SHHHHHHHHHHHHH
T ss_pred EEeccCCCchHHHH-HHHHHHCCChhhhcC--CHHHHHHHHHHHhc
Confidence 98743321 111 111123466665544 88888888877764
No 460
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}
Probab=22.45 E-value=2.3e+02 Score=26.58 Aligned_cols=72 Identities=11% Similarity=0.033 Sum_probs=39.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhC-CCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEEEEec
Q 008619 18 LRVLLLDQDSSAAAELKFKLEAM-DYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSN 96 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~-gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVImLSa 96 (559)
|+|||..-.-.+-..+...|... |++|+.+....+....+.. ....++..|+. + --.+.+.+.++-+|+..+
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~--~~v~~~~~D~~--d---~~~l~~~~~~~d~vi~~a 73 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWR--GKVSVRQLDYF--N---QESMVEAFKGMDTVVFIP 73 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGB--TTBEEEECCTT--C---HHHHHHHTTTCSEEEECC
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhh--CCCEEEEcCCC--C---HHHHHHHHhCCCEEEEeC
Confidence 46888887777777777777776 8888754433222222333 34566666553 2 223334444555554443
No 461
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=22.43 E-value=3.8e+02 Score=25.51 Aligned_cols=80 Identities=16% Similarity=0.143 Sum_probs=47.2
Q ss_pred HHHHHhhCCCEEEEEC---CHHHHHHHhhcCCCCeeEEEEecCCCCCCCH-------HHHHHHcC----CCcEEEEecCC
Q 008619 33 LKFKLEAMDYIVSTFY---NENEALSAFSDKPENFHVAIVEVTTSNTDGS-------FKFLETAK----DLPTIITSNIH 98 (559)
Q Consensus 33 L~~~L~~~gy~V~ta~---~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG-------~eLLe~Ir----diPVImLSa~~ 98 (559)
+.+.+++.|..+..+- +..+.++.+.. ..|+|++....|+ .+| ++-++.++ +++| .+.+--
T Consensus 104 ~i~~i~~~G~k~gval~p~t~~e~l~~~l~---~~D~Vl~msv~pG-f~Gq~f~~~~l~ki~~lr~~~~~~~I-~VdGGI 178 (228)
T 3ovp_A 104 LIKDIRENGMKVGLAIKPGTSVEYLAPWAN---QIDMALVMTVEPG-FGGQKFMEDMMPKVHWLRTQFPSLDI-EVDGGV 178 (228)
T ss_dssp HHHHHHHTTCEEEEEECTTSCGGGTGGGGG---GCSEEEEESSCTT-TCSCCCCGGGHHHHHHHHHHCTTCEE-EEESSC
T ss_pred HHHHHHHcCCCEEEEEcCCCCHHHHHHHhc---cCCeEEEeeecCC-CCCcccCHHHHHHHHHHHHhcCCCCE-EEeCCc
Confidence 3444455666544222 22333333322 3788888776777 666 23344443 3444 455555
Q ss_pred CHHHHHHHHHcCCCEEEeC
Q 008619 99 CLSTMMKCIALGAVEFLRK 117 (559)
Q Consensus 99 d~e~v~kAi~~GA~DYLvK 117 (559)
..+++..++++||+.++.=
T Consensus 179 ~~~t~~~~~~aGAd~~VvG 197 (228)
T 3ovp_A 179 GPDTVHKCAEAGANMIVSG 197 (228)
T ss_dssp STTTHHHHHHHTCCEEEES
T ss_pred CHHHHHHHHHcCCCEEEEe
Confidence 6788999999999988763
No 462
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=22.42 E-value=1.7e+02 Score=25.70 Aligned_cols=55 Identities=16% Similarity=0.183 Sum_probs=39.9
Q ss_pred CcCCCCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEec
Q 008619 11 WKDFPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEV 71 (559)
Q Consensus 11 ~~~~p~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv 71 (559)
++++ .+.+|.++..... ...|...+ .+..++.+.+..+++++|.. .+.|.++.+.
T Consensus 107 ~~dL-~g~~v~~~~g~~~-~~~l~~~~--~~~~~~~~~~~~~~~~~l~~--grvDa~~~~~ 161 (229)
T 2y7i_A 107 FADL-KGKKVGLENGTTH-QRYLQDKQ--QAITPVAYDSYLNAFTDLKN--NRLEGVFGDV 161 (229)
T ss_dssp TGGG-TTCEEEEETTSHH-HHHHHHHC--TTSEEEEESCHHHHHHHHHT--TSCSEEEEEH
T ss_pred HHHH-CCCEEEEecCCcH-HHHHHHhC--CCCeEEecCCHHHHHHHHHc--CCcCEEEech
Confidence 3443 4678888776654 23333332 25788999999999999999 8899999975
No 463
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=22.29 E-value=2.7e+02 Score=27.50 Aligned_cols=55 Identities=15% Similarity=0.249 Sum_probs=39.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhh--CC-C---EEE-EECCHHHHHHHhhcCCCCeeEEEEecCCC
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEA--MD-Y---IVS-TFYNENEALSAFSDKPENFHVAIVEVTTS 74 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~--~g-y---~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MP 74 (559)
..+|..||-|+...+..++.+.. .+ + +|. .+.++.+.+... . ..||+||+|...+
T Consensus 101 ~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~-~--~~fD~Ii~d~~~~ 162 (314)
T 1uir_A 101 VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT-E--ERYDVVIIDLTDP 162 (314)
T ss_dssp CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC-C--CCEEEEEEECCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhc-C--CCccEEEECCCCc
Confidence 46899999999999888887753 12 1 233 567777765542 2 5799999997654
No 464
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=22.27 E-value=1.7e+02 Score=22.55 Aligned_cols=50 Identities=20% Similarity=0.240 Sum_probs=36.4
Q ss_pred ceecCHHHHHHHHHHHHHhCCCCCCChHHHhhcCCCCCCHHHHHHhhhhhhhhhc
Q 008619 319 KVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRR 373 (559)
Q Consensus 319 r~~Wt~~lh~~Fv~av~~lg~~~a~pk~il~~m~v~~lt~~~v~shlQkyr~~~~ 373 (559)
|-.||+|=....+++|++.|..+ =+.|.+.+...|=|-.+++ .+||.+++
T Consensus 11 k~~WT~eED~~L~~~V~~~G~~~--W~~Ia~~~~~~~Rt~~qcr---~Rw~nl~k 60 (64)
T 3sjm_A 11 KQKWTVEESEWVKAGVQKYGEGN--WAAISKNYPFVNRTAVMIK---DRWRTMKR 60 (64)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTC--HHHHHHHSCCSSCCHHHHH---HHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHccCCCc--hHHHHhhcCCCCCCHHHHH---HHHHHHhc
Confidence 45799999999999999999543 3567777776777777765 34444433
No 465
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=22.23 E-value=2.4e+02 Score=25.54 Aligned_cols=85 Identities=12% Similarity=0.049 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhhCCCEEE-EEC---CHHHHHHHhhcCCCCeeEE-EEecCCC---C-CCCHHHHHHHcC--CCcEEEEec
Q 008619 28 SAAAELKFKLEAMDYIVS-TFY---NENEALSAFSDKPENFHVA-IVEVTTS---N-TDGSFKFLETAK--DLPTIITSN 96 (559)
Q Consensus 28 ~~~~~L~~~L~~~gy~V~-ta~---~~~eAL~~Lre~~~~pDLV-IvDv~MP---d-~mdG~eLLe~Ir--diPVImLSa 96 (559)
.....+.+.+.+.|..+. .+. +..+.++.+.+ ...|+| +.=...+ + ...+ +.++.+. ++||++.-+
T Consensus 90 ~~~~~~~~~~~~~g~~~gv~~~s~~~p~~~~~~~~~--~g~d~v~~~~~~~~~~~g~~~~~-~~i~~~~~~~~pi~v~GG 166 (207)
T 3ajx_A 90 STIAGAVKAAQAHNKGVVVDLIGIEDKATRAQEVRA--LGAKFVEMHAGLDEQAKPGFDLN-GLLAAGEKARVPFSVAGG 166 (207)
T ss_dssp HHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHH--TTCSEEEEECCHHHHTSTTCCTH-HHHHHHHHHTSCEEEESS
T ss_pred HHHHHHHHHHHHcCCceEEEEecCCChHHHHHHHHH--hCCCEEEEEecccccccCCCchH-HHHHHhhCCCCCEEEECC
Confidence 334455555655566553 232 55664455544 347887 5422111 1 0123 6666655 788776554
Q ss_pred CCCHHHHHHHHHcCCCEEEe
Q 008619 97 IHCLSTMMKCIALGAVEFLR 116 (559)
Q Consensus 97 ~~d~e~v~kAi~~GA~DYLv 116 (559)
- ..+.+.+++++||+.+.+
T Consensus 167 I-~~~~~~~~~~aGad~vvv 185 (207)
T 3ajx_A 167 V-KVATIPAVQKAGAEVAVA 185 (207)
T ss_dssp C-CGGGHHHHHHTTCSEEEE
T ss_pred c-CHHHHHHHHHcCCCEEEE
Confidence 4 467888999999998765
No 466
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3dij_A* 3ged_A 3geg_A*
Probab=22.14 E-value=3.4e+02 Score=25.18 Aligned_cols=78 Identities=12% Similarity=0.127 Sum_probs=47.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHc----CCCcEE
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA----KDLPTI 92 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~I----rdiPVI 92 (559)
+.+|||..-..-+-..+...|.+.|+.|+.+....+.++.+...-.....+-+|+.-++ +--++++.+ ..+-+|
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~Dv~~~~--~v~~~~~~~~~~~g~id~l 79 (247)
T 3dii_A 2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKERPNLFYFHGDVADPL--TLKKFVEYAMEKLQRIDVL 79 (247)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTSHH--HHHHHHHHHHHHHSCCCEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCCeEEeeCCCHH--HHHHHHHHHHHHcCCCCEE
Confidence 34788888888888999999998999988555444444444441123445555654322 122344443 256666
Q ss_pred EEec
Q 008619 93 ITSN 96 (559)
Q Consensus 93 mLSa 96 (559)
+-.+
T Consensus 80 v~nA 83 (247)
T 3dii_A 80 VNNA 83 (247)
T ss_dssp EECC
T ss_pred EECC
Confidence 6554
No 467
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=22.09 E-value=46 Score=30.68 Aligned_cols=32 Identities=25% Similarity=0.317 Sum_probs=22.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECC
Q 008619 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYN 49 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~ 49 (559)
++|+|+|........+.+.|++.|++++.+.+
T Consensus 3 ~~I~iid~~~~~~~~~~~~l~~~G~~~~~~~~ 34 (200)
T 1ka9_H 3 MKALLIDYGSGNLRSAAKALEAAGFSVAVAQD 34 (200)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHTTCEEEEESS
T ss_pred cEEEEEeCCCccHHHHHHHHHHCCCeEEEecC
Confidence 68999974422335567888888988887764
No 468
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=22.08 E-value=77 Score=31.97 Aligned_cols=57 Identities=11% Similarity=0.093 Sum_probs=40.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhh--CC----CEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCC
Q 008619 16 KGLRVLLLDQDSSAAAELKFKLEA--MD----YIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSN 75 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~--~g----y~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd 75 (559)
...+|-+||=|+.+.+..+..|.. .+ =+|. .+.|+.+. |++....||+||+|..-|.
T Consensus 106 ~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~---l~~~~~~yDvIi~D~~dp~ 169 (294)
T 3o4f_A 106 NVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNF---VNQTSQTFDVIISDCTDPI 169 (294)
T ss_dssp TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTT---TSCSSCCEEEEEESCCCCC
T ss_pred CcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHH---HhhccccCCEEEEeCCCcC
Confidence 345899999999999998888843 12 1233 55665554 4554468999999997665
No 469
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=22.06 E-value=2.7e+02 Score=28.70 Aligned_cols=33 Identities=15% Similarity=0.194 Sum_probs=24.3
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC
Q 008619 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFY 48 (559)
Q Consensus 15 p~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~ 48 (559)
+.+.+|+|+..-..- ..+...+++.||+|+.+.
T Consensus 33 ~~~~~IlIlG~G~lg-~~~~~aa~~lG~~v~v~d 65 (419)
T 4e4t_A 33 LPGAWLGMVGGGQLG-RMFCFAAQSMGYRVAVLD 65 (419)
T ss_dssp CTTCEEEEECCSHHH-HHHHHHHHHTTCEEEEEC
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHCCCEEEEEC
Confidence 345699999987654 456667788899988665
No 470
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=21.97 E-value=85 Score=31.27 Aligned_cols=99 Identities=16% Similarity=0.272 Sum_probs=52.0
Q ss_pred CcEEEEEeC-----CHHHHHHHHHHHhhCCCEEEEECCHHHH-----------------HHHhh---cCCCCeeEEEEec
Q 008619 17 GLRVLLLDQ-----DSSAAAELKFKLEAMDYIVSTFYNENEA-----------------LSAFS---DKPENFHVAIVEV 71 (559)
Q Consensus 17 glrVLIVDD-----D~~~~~~L~~~L~~~gy~V~ta~~~~eA-----------------L~~Lr---e~~~~pDLVIvDv 71 (559)
+.+|+||-. .......+...|+..|++|....+..+. ...+. .....+|+||+
T Consensus 4 m~ki~iI~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~-- 81 (307)
T 1u0t_A 4 HRSVLLVVHTGRDEATETARRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGCELVLV-- 81 (307)
T ss_dssp -CEEEEEESSSGGGGSHHHHHHHHHHHTTTCEEEEEC-----------------------------------CCCEEE--
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhhcccccccccccccccccccccccccccCCCEEEE--
Confidence 357887733 2234667888888889987754433222 11110 01135788777
Q ss_pred CCCCCCCH--HHHHHHcC--CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008619 72 TTSNTDGS--FKFLETAK--DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 72 ~MPd~mdG--~eLLe~Ir--diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
+ + +|| +..++.+. ++||+-+.. |=.+||. .+..+++..+++.++..
T Consensus 82 -~-G-GDGT~l~a~~~~~~~~~pvlgi~~-------------G~~gfl~-~~~~~~~~~~~~~i~~g 131 (307)
T 1u0t_A 82 -L-G-GDGTFLRAAELARNASIPVLGVNL-------------GRIGFLA-EAEAEAIDAVLEHVVAQ 131 (307)
T ss_dssp -E-E-CHHHHHHHHHHHHHHTCCEEEEEC-------------SSCCSSC-SEEGGGHHHHHHHHHHT
T ss_pred -E-e-CCHHHHHHHHHhccCCCCEEEEeC-------------CCCccCc-ccCHHHHHHHHHHHHcC
Confidence 1 3 567 44455553 789887752 2234554 24556677777776654
No 471
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Probab=21.93 E-value=2.5e+02 Score=28.64 Aligned_cols=84 Identities=14% Similarity=0.180 Sum_probs=55.1
Q ss_pred HHHHHHHhhCCCEEE--EECCHHHHHHHhhcCCCCeeEEEEecCC----CCCCCHHHHHHHc----C-CCcEEEEecCCC
Q 008619 31 AELKFKLEAMDYIVS--TFYNENEALSAFSDKPENFHVAIVEVTT----SNTDGSFKFLETA----K-DLPTIITSNIHC 99 (559)
Q Consensus 31 ~~L~~~L~~~gy~V~--ta~~~~eAL~~Lre~~~~pDLVIvDv~M----Pd~mdG~eLLe~I----r-diPVImLSa~~d 99 (559)
+.++.+-+..+..|+ .+.+.++|...+.. ..|.|.+.-+- .....-++++..+ . ++|||.-..-.+
T Consensus 215 ~~i~~l~~~~~~pv~vK~~~~~e~a~~a~~~---Gad~I~vs~~ggr~~~~~~~~~~~l~~v~~~~~~~ipvia~GGI~~ 291 (370)
T 1gox_A 215 KDVAWLQTITSLPILVKGVITAEDARLAVQH---GAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRR 291 (370)
T ss_dssp HHHHHHHHHCCSCEEEECCCSHHHHHHHHHT---TCSEEEECCGGGTSSTTCCCHHHHHHHHHHHTTTSSCEEEESSCCS
T ss_pred HHHHHHHHHhCCCEEEEecCCHHHHHHHHHc---CCCEEEECCCCCccCCCcccHHHHHHHHHHHhCCCCEEEEECCCCC
Confidence 445555555554443 45677777665544 58888874321 1101234444443 3 699999999999
Q ss_pred HHHHHHHHHcCCCEEEeC
Q 008619 100 LSTMMKCIALGAVEFLRK 117 (559)
Q Consensus 100 ~e~v~kAi~~GA~DYLvK 117 (559)
.+.+.+++.+||+...+-
T Consensus 292 ~~D~~k~l~~GAdaV~iG 309 (370)
T 1gox_A 292 GTDVFKALALGAAGVFIG 309 (370)
T ss_dssp HHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHcCCCEEeec
Confidence 999999999999998874
No 472
>3lyh_A Cobalamin (vitamin B12) biosynthesis CBIX protein; structural genomics, joint center for structural genomics, protein structure initiative; HET: MSE; 1.60A {Marinobacter aquaeolei}
Probab=21.85 E-value=64 Score=27.53 Aligned_cols=41 Identities=22% Similarity=0.293 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhhCCCccCCCCCCCCchhHHHHHHHHcCCCCC
Q 008619 508 EVIDKVVKEAISKPWLPLPLGLKPPSADSVLAELSRQGISTI 549 (559)
Q Consensus 508 e~~d~~~~~~~~~pw~plp~glk~p~~~~v~~el~~qg~~~~ 549 (559)
+.+.+.+++.+ .+-..-=+.+-.|+++.++.+|.++|+.+|
T Consensus 25 ~~l~~~l~~~~-~~V~~a~le~~~P~l~~~l~~l~~~G~~~v 65 (126)
T 3lyh_A 25 EKLAEPTVESI-ENAAIAYMELAEPSLDTIVNRAKGQGVEQF 65 (126)
T ss_dssp HHHHHHHHHHS-TTCEEEESSSSSSBHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHhhc-CCEEEEEEeCCCCCHHHHHHHHHHcCCCEE
Confidence 34445566555 333333367789999999999999998764
No 473
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=21.78 E-value=1.3e+02 Score=30.32 Aligned_cols=72 Identities=10% Similarity=0.075 Sum_probs=41.9
Q ss_pred cEEEEEeCCHHH---HHHHHHHHhhCCCEEEEEC-----C---HHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHc
Q 008619 18 LRVLLLDQDSSA---AAELKFKLEAMDYIVSTFY-----N---ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA 86 (559)
Q Consensus 18 lrVLIVDDD~~~---~~~L~~~L~~~gy~V~ta~-----~---~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~I 86 (559)
-|+|||.|.... .+.+...|+..|+++..+. + .+++ +.+++ .++|+||. +.+ +.-.++.+.+
T Consensus 35 ~~~livtd~~~~~~~~~~v~~~L~~~g~~~~~~~~~~~~~~~~v~~~-~~~~~--~~~d~IIa---vGG-Gsv~D~aK~v 107 (354)
T 3ce9_A 35 KRVSLYFGEGIYELFGETIEKSIKSSNIEIEAVETVKNIDFDEIGTN-AFKIP--AEVDALIG---IGG-GKAIDAVKYM 107 (354)
T ss_dssp SEEEEEEETTHHHHHHHHHHHHHHTTTCEEEEEEEECCCBHHHHHHH-HTTSC--TTCCEEEE---EES-HHHHHHHHHH
T ss_pred CeEEEEECccHHHHHHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH-HHhhh--cCCCEEEE---ECC-hHHHHHHHHH
Confidence 389999887654 3445666766787765433 3 3334 44555 67898885 222 2224444433
Q ss_pred ---CCCcEEEEec
Q 008619 87 ---KDLPTIITSN 96 (559)
Q Consensus 87 ---rdiPVImLSa 96 (559)
+.+|+|.+-.
T Consensus 108 A~~~~~p~i~IPT 120 (354)
T 3ce9_A 108 AFLRKLPFISVPT 120 (354)
T ss_dssp HHHHTCCEEEEES
T ss_pred HhhcCCCEEEecC
Confidence 5788887743
No 474
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=21.77 E-value=1.3e+02 Score=31.87 Aligned_cols=54 Identities=22% Similarity=0.234 Sum_probs=33.1
Q ss_pred CCcEEEEEeCCHH---HHHHHHHHHhhCCCEEEEECC---H----HHHHHHhhcCCCCeeEEEEec
Q 008619 16 KGLRVLLLDQDSS---AAAELKFKLEAMDYIVSTFYN---E----NEALSAFSDKPENFHVAIVEV 71 (559)
Q Consensus 16 ~glrVLIVDDD~~---~~~~L~~~L~~~gy~V~ta~~---~----~eAL~~Lre~~~~pDLVIvDv 71 (559)
.+.+|+++|-|.. ....|...-...|+.+..... . .++++.++. ..+|+||+|.
T Consensus 125 ~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~~~--~~~DvVIIDT 188 (425)
T 2ffh_A 125 KGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARL--EARDLILVDT 188 (425)
T ss_dssp TTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHH--TTCSEEEEEC
T ss_pred cCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHHHH--CCCCEEEEcC
Confidence 4679999998843 323344333445676665432 2 345555544 5699999997
No 475
>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*
Probab=21.74 E-value=2.6e+02 Score=28.09 Aligned_cols=65 Identities=18% Similarity=0.211 Sum_probs=45.3
Q ss_pred HHHHHHhhcCCCCeeEEEEecCC--------CCCCCHHHHHHHcC-CCcEEEEecCC------------C-----HHHHH
Q 008619 51 NEALSAFSDKPENFHVAIVEVTT--------SNTDGSFKFLETAK-DLPTIITSNIH------------C-----LSTMM 104 (559)
Q Consensus 51 ~eAL~~Lre~~~~pDLVIvDv~M--------Pd~mdG~eLLe~Ir-diPVImLSa~~------------d-----~e~v~ 104 (559)
..|++.+.+. ...+|+|+.... -+ +..+..++... ++||++=+.+. - .....
T Consensus 151 ~~ave~i~~~-Gn~~i~L~erg~~y~~~~~~vd-l~~i~~lk~~~~~~pV~~D~sHs~q~p~~~~~~s~G~r~~v~~~a~ 228 (285)
T 3sz8_A 151 KHVVSKCGEV-GNDRVMLCERGSSFGYDNLVVD-MLGFRQMAETTGGCPVIFDVTHSLQCRDPLGDASGGRRRQVLDLAR 228 (285)
T ss_dssp HHHHHHHHHT-TCCCEEEEECCEECSSSCEECC-TTHHHHHHHHTTSCCEEEETTTTCC---------------HHHHHH
T ss_pred HHHHHHHHHc-CCCcEEEEeCCCCCCCCcCccC-HHHHHHHHHhCCCCCEEEeCCCccccCCCcCCCCCCchhhHHHHHH
Confidence 5677777663 456899987533 25 66788888776 59999866665 2 45678
Q ss_pred HHHHcCCCEE-EeC
Q 008619 105 KCIALGAVEF-LRK 117 (559)
Q Consensus 105 kAi~~GA~DY-LvK 117 (559)
.|+.+||++. |-|
T Consensus 229 AAvA~GA~gl~IE~ 242 (285)
T 3sz8_A 229 AGIAVGIAGLFLEA 242 (285)
T ss_dssp HHHHHCCSEEEEEE
T ss_pred HHHHhCCCEEEEEe
Confidence 8999999974 444
No 476
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=21.72 E-value=1.9e+02 Score=28.47 Aligned_cols=92 Identities=12% Similarity=0.115 Sum_probs=51.2
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEE-EEC--CHHHHHHHhhcCCCCeeEEEEecCCCCCCCH---------HHHHHHcC
Q 008619 20 VLLLDQDSSAAAELKFKLEAMDYIVS-TFY--NENEALSAFSDKPENFHVAIVEVTTSNTDGS---------FKFLETAK 87 (559)
Q Consensus 20 VLIVDDD~~~~~~L~~~L~~~gy~V~-ta~--~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG---------~eLLe~Ir 87 (559)
|++.|-.......+...+++.|+.++ .+. +..+-++.+......|++++ .+.+ ..| .++++.++
T Consensus 123 viv~Dl~~ee~~~~~~~~~~~gl~~i~liap~s~~eri~~ia~~~~gfiy~v---s~~G-~TG~~~~~~~~~~~~v~~vr 198 (271)
T 1ujp_A 123 VILPDLPPDEDPGLVRLAQEIGLETVFLLAPTSTDARIATVVRHATGFVYAV---SVTG-VTGMRERLPEEVKDLVRRIK 198 (271)
T ss_dssp EECTTCCGGGCHHHHHHHHHHTCEEECEECTTCCHHHHHHHHTTCCSCEEEE---CC-------------CCHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHHHHHcCCceEEEeCCCCCHHHHHHHHHhCCCCEEEE---ecCc-ccCCCCCCCccHHHHHHHHH
Confidence 44444433344555566666666533 232 22333344444223454433 2222 122 46777775
Q ss_pred ---CCcEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008619 88 ---DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (559)
Q Consensus 88 ---diPVImLSa~~d~e~v~kAi~~GA~DYLvK 117 (559)
++||++=.+-.+.+.+.++ .||++.++=
T Consensus 199 ~~~~~Pv~vGfGI~t~e~a~~~--~~ADgVIVG 229 (271)
T 1ujp_A 199 ARTALPVAVGFGVSGKATAAQA--AVADGVVVG 229 (271)
T ss_dssp TTCCSCEEEESCCCSHHHHHHH--TTSSEEEEC
T ss_pred hhcCCCEEEEcCCCCHHHHHHh--cCCCEEEEC
Confidence 6898877777778888885 999999985
No 477
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Probab=21.71 E-value=3.3e+02 Score=28.06 Aligned_cols=83 Identities=16% Similarity=0.211 Sum_probs=56.0
Q ss_pred HHHHHHhhCCCE--EEEECCHHHHHHHhhcCCCCeeEEEEecCCC----CCCCHHHHHHHc----C-CCcEEEEecCCCH
Q 008619 32 ELKFKLEAMDYI--VSTFYNENEALSAFSDKPENFHVAIVEVTTS----NTDGSFKFLETA----K-DLPTIITSNIHCL 100 (559)
Q Consensus 32 ~L~~~L~~~gy~--V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MP----d~mdG~eLLe~I----r-diPVImLSa~~d~ 100 (559)
.++.+-+..+.- |-.+.+.++|...... .+|.|++.-+-. .....++++..+ . ++|||+-.+-.+.
T Consensus 208 ~i~~lr~~~~~PvivK~v~~~e~A~~a~~~---GaD~I~vsn~GG~~~d~~~~~~~~L~~i~~av~~~ipVia~GGI~~g 284 (352)
T 3sgz_A 208 DLSLLQSITRLPIILKGILTKEDAELAMKH---NVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTG 284 (352)
T ss_dssp HHHHHHHHCCSCEEEEEECSHHHHHHHHHT---TCSEEEECCGGGTSSCSSCCHHHHHHHHHHHHTTSSEEEEESSCCSH
T ss_pred HHHHHHHhcCCCEEEEecCcHHHHHHHHHc---CCCEEEEeCCCCCccCCCccHHHHHHHHHHHhCCCCeEEEECCCCCH
Confidence 344444444433 3367888888776654 588888744311 102235666554 3 6999999999999
Q ss_pred HHHHHHHHcCCCEEEeC
Q 008619 101 STMMKCIALGAVEFLRK 117 (559)
Q Consensus 101 e~v~kAi~~GA~DYLvK 117 (559)
..+.+++.+||+...+-
T Consensus 285 ~Dv~kaLalGA~aV~iG 301 (352)
T 3sgz_A 285 TDVLKALALGARCIFLG 301 (352)
T ss_dssp HHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHcCCCEEEEC
Confidence 99999999999998874
No 478
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=21.70 E-value=1.8e+02 Score=28.17 Aligned_cols=85 Identities=18% Similarity=0.191 Sum_probs=51.8
Q ss_pred cEEEEEeCCHHHHHHHHHHH-hhCCCEEEE---E----CCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC--
Q 008619 18 LRVLLLDQDSSAAAELKFKL-EAMDYIVST---F----YNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-- 87 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L-~~~gy~V~t---a----~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-- 87 (559)
..+++.+++......+.+.+ +..|.+|+. + .+....+..|+. ..+|+|++-..- .++..+++.++
T Consensus 145 ~~~~~~~~~~~yg~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~l~~i~~--~~~d~v~~~~~~---~~~~~~~~~~~~~ 219 (353)
T 4gnr_A 145 KVVLYTDNASDYAKGIAKSFRESYKGEIVADETFVAGDTDFQAALTKMKG--KDFDAIVVPGYY---NEAGKIVNQARGM 219 (353)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHCCSEEEEEEEECTTCCCCHHHHHHHHT--SCCSEEECCSCH---HHHHHHHHHHHHT
T ss_pred EEEEEEcCchHHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHh--cCCCEEEEecCc---HHHHHHHHHHHHc
Confidence 34555666555555555544 456777652 2 356777888887 689999875432 23566666664
Q ss_pred --CCcEEEEecCCCHHHHHHHH
Q 008619 88 --DLPTIITSNIHCLSTMMKCI 107 (559)
Q Consensus 88 --diPVImLSa~~d~e~v~kAi 107 (559)
..+++..+.....+....+.
T Consensus 220 g~~~~~~~~~~~~~~~~~~~~~ 241 (353)
T 4gnr_A 220 GIDKPIVGGDGFNGEEFVQQAT 241 (353)
T ss_dssp TCCSCEEECGGGCSHHHHHHHC
T ss_pred CCCCcEEEecccccchhhhhhh
Confidence 57777666666666555443
No 479
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Probab=21.70 E-value=2e+02 Score=28.36 Aligned_cols=131 Identities=13% Similarity=0.115 Sum_probs=69.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhC--CCEEE-EEC-CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEE
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAM--DYIVS-TFY-NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTI 92 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~--gy~V~-ta~-~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVI 92 (559)
++||.||.--..-...+..+.... +++++ .|. +.+.|-+.... ....-+. .+--++++. .++-+|
T Consensus 2 ~~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~--~~~~~~~--------~~~~~ll~~-~~vD~V 70 (334)
T 3ohs_X 2 ALRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQK--HDIPKAY--------GSYEELAKD-PNVEVA 70 (334)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHH--HTCSCEE--------SSHHHHHHC-TTCCEE
T ss_pred ccEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHH--cCCCccc--------CCHHHHhcC-CCCCEE
Confidence 479999998776665444443322 35666 344 33334333333 1111011 233344442 234444
Q ss_pred EEec--CCCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHHHHHHhcCCCCccCCCcHHHHHHHHHHh
Q 008619 93 ITSN--IHCLSTMMKCIALGAVEFLRKPL--SEDKLRNLWQHVVHKAFNAGGSALSDSLKPVKESVVSMLH 159 (559)
Q Consensus 93 mLSa--~~d~e~v~kAi~~GA~DYLvKPi--s~eeL~~iIq~vlrr~~~~~~~~~s~~Lt~re~eVl~li~ 159 (559)
+++. ..-.+.+.+|+++|..=|+-||+ +.++....++.+-+.... .......+..+.-..+.+++.
T Consensus 71 ~i~tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~-~~v~~~~r~~p~~~~~k~~i~ 140 (334)
T 3ohs_X 71 YVGTQHPQHKAAVMLCLAAGKAVLCEKPMGVNAAEVREMVTEARSRGLF-LMEAIWTRFFPASEALRSVLA 140 (334)
T ss_dssp EECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHTTCC-EEEECGGGGSHHHHHHHHHHH
T ss_pred EECCCcHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHHHHHhCCE-EEEEEhHhcCHHHHHHHHHHh
Confidence 4443 34567788999999999999998 777877766554322110 001112344555555555554
No 480
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=21.69 E-value=1.1e+02 Score=29.19 Aligned_cols=63 Identities=13% Similarity=0.200 Sum_probs=42.1
Q ss_pred CCcEEEEEeCCH------HHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC
Q 008619 16 KGLRVLLLDQDS------SAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK 87 (559)
Q Consensus 16 ~glrVLIVDDD~------~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir 87 (559)
..-+|++|+-.. .....+.+.|++.|+++.......+..+.|.+ .|.|++ |+ .+-+.+++.++
T Consensus 30 ~~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~~v~~~~d~~~~l~~----ad~I~l----pG-G~~~~~~~~l~ 98 (229)
T 1fy2_A 30 GRRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVADPLAAIEK----AEIIIV----GG-GNTFQLLKESR 98 (229)
T ss_dssp TCCEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEETTSSSCHHHHHHH----CSEEEE----CC-SCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEeccccHHHHHhc----CCEEEE----CC-CcHHHHHHHHH
Confidence 346899997543 67788899999999988876432233345555 577776 56 66666665553
No 481
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=21.57 E-value=51 Score=32.15 Aligned_cols=57 Identities=12% Similarity=0.225 Sum_probs=39.4
Q ss_pred HHHHhhcCCCCeeEEEEecCCCCC-CCHHHHHHHcC--CCcEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008619 53 ALSAFSDKPENFHVAIVEVTTSNT-DGSFKFLETAK--DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (559)
Q Consensus 53 AL~~Lre~~~~pDLVIvDv~MPd~-mdG~eLLe~Ir--diPVImLSa~~d~e~v~kAi~~GA~DYLvK 117 (559)
+++.+.+ ...|+|++.-...-. .+-+++++.++ ++|+|++....+ .+..||+.||.-
T Consensus 23 ~~~~~~~--~GtD~i~vGGs~gvt~~~~~~~v~~ik~~~~Pvvlfp~~~~------~v~~gaD~~l~p 82 (228)
T 3vzx_A 23 QLEILCE--SGTDAVIIGGSDGVTEDNVLRMMSKVRRFLVPCVLEVSAIE------AIVPGFDLYFIP 82 (228)
T ss_dssp HHHHHHT--SSCSEEEECCCSCCCHHHHHHHHHHHTTSSSCEEEECSCGG------GCCSCCSEEEEE
T ss_pred HHHHHHH--cCCCEEEECCcCCCCHHHHHHHHHHhhccCCCEEEeCCCHH------HccccCCEEEEe
Confidence 4444445 568999998865220 23467777776 799999988743 345799999874
No 482
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=21.50 E-value=2.1e+02 Score=26.20 Aligned_cols=66 Identities=11% Similarity=0.165 Sum_probs=45.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCC--EEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHc
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAMDY--IVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA 86 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy--~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~I 86 (559)
+.+|..+|-++...+..+..+...|+ .|. ...+..+.+..+.. ...||+|++|....+ -.++++.+
T Consensus 78 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-~~~fD~I~~~~~~~~---~~~~l~~~ 146 (233)
T 2gpy_A 78 EATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLEL-YPLFDVLFIDAAKGQ---YRRFFDMY 146 (233)
T ss_dssp TCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTT-SCCEEEEEEEGGGSC---HHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhccc-CCCccEEEECCCHHH---HHHHHHHH
Confidence 46899999999999999999887764 244 45566555444421 157999999986544 34455544
No 483
>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*
Probab=21.49 E-value=3.4e+02 Score=24.47 Aligned_cols=73 Identities=10% Similarity=0.106 Sum_probs=46.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhC--CCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEEE
Q 008619 16 KGLRVLLLDQDSSAAAELKFKLEAM--DYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTII 93 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~--gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVIm 93 (559)
++++|||....--+-..|...|.+. |++|+.+....+.+..+ . ....++..|+. + --.+.+.+..+-+|+
T Consensus 3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~-~--~~~~~~~~D~~--d---~~~~~~~~~~~d~vi 74 (253)
T 1xq6_A 3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI-G--GEADVFIGDIT--D---ADSINPAFQGIDALV 74 (253)
T ss_dssp SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHT-T--CCTTEEECCTT--S---HHHHHHHHTTCSEEE
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhc-C--CCeeEEEecCC--C---HHHHHHHHcCCCEEE
Confidence 3578999998888888888888777 89998555434444444 2 34566777764 2 223334445566665
Q ss_pred Eec
Q 008619 94 TSN 96 (559)
Q Consensus 94 LSa 96 (559)
..+
T Consensus 75 ~~a 77 (253)
T 1xq6_A 75 ILT 77 (253)
T ss_dssp ECC
T ss_pred Eec
Confidence 543
No 484
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=21.43 E-value=2e+02 Score=27.05 Aligned_cols=97 Identities=11% Similarity=0.086 Sum_probs=50.1
Q ss_pred HHHHHHHHhhCCCEEEEEC-----CHH---HHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHc--CCCcEEEEecCCC
Q 008619 30 AAELKFKLEAMDYIVSTFY-----NEN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA--KDLPTIITSNIHC 99 (559)
Q Consensus 30 ~~~L~~~L~~~gy~V~ta~-----~~~---eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~I--rdiPVImLSa~~d 99 (559)
...++..++..||.+..+. +.+ +.++.+.. ..+|-||+-....+ .-.+.++.+ ..+|||++....+
T Consensus 20 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~vdgiIi~~~~~~--~~~~~~~~~~~~~iPvV~~~~~~~ 95 (288)
T 1gud_A 20 KKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSN--KNYKGIAFAPLSSV--NLVMPVARAWKKGIYLVNLDEKID 95 (288)
T ss_dssp HHHHHHHHHHHTCCEEEEECSSTTCHHHHHHHHHHHHT--SSEEEEEECCSSSS--TTHHHHHHHHHTTCEEEEESSCCC
T ss_pred HHHHHHHHHHcCCEEEEeCCCCCCCHHHHHHHHHHHHH--cCCCEEEEeCCChH--HHHHHHHHHHHCCCeEEEECCCCC
Confidence 3445666677799887554 222 34555555 67998887432222 112344444 3799998865443
Q ss_pred HHHHHHHHHcCC-C-EEEeCCCCHHHHHHHHHHHHHH
Q 008619 100 LSTMMKCIALGA-V-EFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 100 ~e~v~kAi~~GA-~-DYLvKPis~eeL~~iIq~vlrr 134 (559)
.... -+.|. . +|+. .-+..--..+.++++..
T Consensus 96 ~~~~---~~~~~~~~~~V~-~D~~~~g~~a~~~L~~~ 128 (288)
T 1gud_A 96 MDNL---KKAGGNVEAFVT-TDNVAVGAKGASFIIDK 128 (288)
T ss_dssp HHHH---HHTTCCCSEEEE-CCHHHHHHHHHHHHHHH
T ss_pred cccc---cccCCceeEEEC-CChHHHHHHHHHHHHHH
Confidence 2211 11232 2 5554 23333444455555544
No 485
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=21.41 E-value=2.6e+02 Score=27.47 Aligned_cols=66 Identities=18% Similarity=0.164 Sum_probs=42.7
Q ss_pred CHHHHHH---HhhcCCCCeeEEEEec---CCC-------CCCCHHHHHHHcCCCcEEEEecCCCH------HHHHHHHHc
Q 008619 49 NENEALS---AFSDKPENFHVAIVEV---TTS-------NTDGSFKFLETAKDLPTIITSNIHCL------STMMKCIAL 109 (559)
Q Consensus 49 ~~~eAL~---~Lre~~~~pDLVIvDv---~MP-------d~mdG~eLLe~IrdiPVImLSa~~d~------e~v~kAi~~ 109 (559)
+.++++. .+... ...+++|+.- ..+ + +..+..++...++|||+.+++..- .....|+..
T Consensus 142 t~~e~~~Av~~i~~~-Gn~~i~L~~RG~~~~~~y~~~~v~-L~ai~~lk~~~~~pVi~d~sH~~g~~~~v~~~~~aAva~ 219 (262)
T 1zco_A 142 TIQELLYSAEYIMAQ-GNENVILCERGIRTFETATRFTLD-ISAVPVVKELSHLPIIVDPSHPAGRRSLVIPLAKAAYAI 219 (262)
T ss_dssp CHHHHHHHHHHHHTT-TCCCEEEEECCBCCSCCSSSSBCC-TTHHHHHHHHBSSCEEECSSTTTCSGGGHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHC-CCCeEEEEECCCCCCCCcChhhcC-HHHHHHHHhhhCCCEEEEcCCCCCccchHHHHHHHHHHc
Confidence 4555544 44442 4568888771 111 2 356777776668999888887532 456778999
Q ss_pred CCCEEEe
Q 008619 110 GAVEFLR 116 (559)
Q Consensus 110 GA~DYLv 116 (559)
||++.++
T Consensus 220 Ga~Gl~i 226 (262)
T 1zco_A 220 GADGIMV 226 (262)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 9998765
No 486
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=21.31 E-value=1.4e+02 Score=28.63 Aligned_cols=81 Identities=16% Similarity=0.053 Sum_probs=47.9
Q ss_pred cEEEEEe-CCHH---HHHHHHHHHhhCCCEEE---EE----CCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHc
Q 008619 18 LRVLLLD-QDSS---AAAELKFKLEAMDYIVS---TF----YNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA 86 (559)
Q Consensus 18 lrVLIVD-DD~~---~~~~L~~~L~~~gy~V~---ta----~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~I 86 (559)
-+|.+|. ++.. ..+.+++.|+..|..++ .+ .+....+..+.. ..+|+|++... + .....+++.+
T Consensus 136 ~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~--~~~dav~~~~~--~-~~a~~~~~~~ 210 (362)
T 3snr_A 136 KTVGYIGYSDSYGDLWFNDLKKQGEAMGLKIVGEERFARPDTSVAGQALKLVA--ANPDAILVGAS--G-TAAALPQTTL 210 (362)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCSCCHHHHHHHHH--HCCSEEEEECC--H-HHHHHHHHHH
T ss_pred CEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEeecCCCCCCHHHHHHHHHh--cCCCEEEEecC--c-chHHHHHHHH
Confidence 3666654 4433 33456677777888754 22 245566777766 56899888542 2 3355566655
Q ss_pred C----CCcEEEEecCCCHHHH
Q 008619 87 K----DLPTIITSNIHCLSTM 103 (559)
Q Consensus 87 r----diPVImLSa~~d~e~v 103 (559)
+ .+|+|.+....+.+..
T Consensus 211 ~~~g~~~p~i~~~g~~~~~~~ 231 (362)
T 3snr_A 211 RERGYNGLIYQTHGAASMDFI 231 (362)
T ss_dssp HHTTCCSEEEECGGGCSHHHH
T ss_pred HHcCCCccEEeccCcCcHHHH
Confidence 3 5787666666665544
No 487
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=21.27 E-value=1.6e+02 Score=28.48 Aligned_cols=56 Identities=16% Similarity=0.144 Sum_probs=38.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhC--CC---EEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCC
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAM--DY---IVS-TFYNENEALSAFSDKPENFHVAIVEVTTSN 75 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~--gy---~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd 75 (559)
..+|.+||-|+...+..++.+... ++ +|. ...++.+.+.. ....||+||+|...+.
T Consensus 99 ~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~---~~~~fD~Ii~d~~~~~ 160 (275)
T 1iy9_A 99 VKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAK---SENQYDVIMVDSTEPV 160 (275)
T ss_dssp CSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHT---CCSCEEEEEESCSSCC
T ss_pred CceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhh---CCCCeeEEEECCCCCC
Confidence 368999999999999988877431 11 233 56676665543 2257999999986543
No 488
>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A
Probab=21.21 E-value=1.7e+02 Score=29.28 Aligned_cols=104 Identities=16% Similarity=0.205 Sum_probs=59.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhC-CCEEEEECCH-HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEEE
Q 008619 16 KGLRVLLLDQDSSAAAELKFKLEAM-DYIVSTFYNE-NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTII 93 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~-gy~V~ta~~~-~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVIm 93 (559)
+++||.||.--..-.......|... +++++.+.+. .+.+ ... . ..+-.. .+--++++. .++-+|+
T Consensus 4 ~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~--~~~--~-~~~~~~-------~~~~~ll~~-~~vD~V~ 70 (358)
T 3gdo_A 4 DTIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEV--KRD--F-PDAEVV-------HELEEITND-PAIELVI 70 (358)
T ss_dssp TCEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHHH--HHH--C-TTSEEE-------SSTHHHHTC-TTCCEEE
T ss_pred CcceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHH--Hhh--C-CCCceE-------CCHHHHhcC-CCCCEEE
Confidence 4589999998766655455556554 7888743332 2221 112 1 011111 112233321 1444555
Q ss_pred Eec--CCCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHH
Q 008619 94 TSN--IHCLSTMMKCIALGAVEFLRKPL--SEDKLRNLWQHVV 132 (559)
Q Consensus 94 LSa--~~d~e~v~kAi~~GA~DYLvKPi--s~eeL~~iIq~vl 132 (559)
++. ..-.+.+..|+++|..=|+-||+ +.++....+..+-
T Consensus 71 i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~e~~~l~~~a~ 113 (358)
T 3gdo_A 71 VTTPSGLHYEHTMACIQAGKHVVMEKPMTATAEEGETLKRAAD 113 (358)
T ss_dssp ECSCTTTHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHH
T ss_pred EcCCcHHHHHHHHHHHHcCCeEEEecCCcCCHHHHHHHHHHHH
Confidence 544 34567789999999999999995 5777776655443
No 489
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=21.18 E-value=58 Score=30.99 Aligned_cols=60 Identities=8% Similarity=0.143 Sum_probs=43.7
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhCCC--EEE-EECCHHHHHHHhhcC--CCCeeEEEEecCC
Q 008619 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDY--IVS-TFYNENEALSAFSDK--PENFHVAIVEVTT 73 (559)
Q Consensus 14 ~p~glrVLIVDDD~~~~~~L~~~L~~~gy--~V~-ta~~~~eAL~~Lre~--~~~pDLVIvDv~M 73 (559)
++.+-+|..||-++...+..+..+...|. .|. ...++.+.+..+... ...||+|++|...
T Consensus 82 ~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V~~d~~~ 146 (242)
T 3r3h_A 82 LPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFIFIDADK 146 (242)
T ss_dssp SCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEEEEESCG
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEEEEcCCh
Confidence 44457999999998888888888887764 244 677888877766320 1579999999863
No 490
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=21.00 E-value=83 Score=29.93 Aligned_cols=67 Identities=15% Similarity=0.130 Sum_probs=42.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCC--EEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHc
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAMDY--IVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA 86 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy--~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~I 86 (559)
+.+|..||-++...+..+..+...|. .+. ...+..+... +.. ..||+|++...+....+-..+++.+
T Consensus 90 ~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~--~~fD~v~~~~~l~~~~~~~~~l~~~ 159 (285)
T 4htf_A 90 GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVAS-HLE--TPVDLILFHAVLEWVADPRSVLQTL 159 (285)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGG-GCS--SCEEEEEEESCGGGCSCHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhh-hcC--CCceEEEECchhhcccCHHHHHHHH
Confidence 56899999999999888888877654 233 4445443321 223 6799999987665412334555555
No 491
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=20.91 E-value=2.1e+02 Score=24.92 Aligned_cols=107 Identities=9% Similarity=0.069 Sum_probs=62.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEEEEe
Q 008619 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITS 95 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVImLS 95 (559)
.+.+|.++..... ...+...+... ..++.+.+..+++++|.. .+.|.++.|.. ....+++....-.+.++.
T Consensus 108 ~g~~v~~~~g~~~-~~~l~~~~~~~-~~~~~~~~~~~~~~~l~~--grvDa~~~~~~-----~~~~~~~~~~~~~~~~~~ 178 (227)
T 3tql_A 108 KGKIIGVQGGTTF-DSYLQDSFGNS-ITIQRYPSEEDALMDLTS--GRVDAVVGDTP-----LIKQWLKQNGRREYVLIG 178 (227)
T ss_dssp TTCEEEEETTSHH-HHHHHHHHGGG-SEEEEESSHHHHHHHHTT--TSSSEEESCHH-----HHHHHHHHTTCCSEEEEE
T ss_pred CCCEEEEEecccH-HHHHHHhcccc-ceEEEcCCHHHHHHHHHc--CCcCEEEeChH-----HHHHHHHhCCCCCEEEec
Confidence 4678888877644 34455554332 788899999999999999 88999998652 233344444322122222
Q ss_pred -cCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHh
Q 008619 96 -NIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFN 137 (559)
Q Consensus 96 -a~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~~ 137 (559)
...... ....+..-.+.|- ..+|...+..++.....
T Consensus 179 ~~~~~~~----~~~~~~~~~~~~~--~~~l~~~l~~~l~~l~~ 215 (227)
T 3tql_A 179 KPVNDPN----YFGKGVGIAVKKG--NQALLLKLNKALAAIKA 215 (227)
T ss_dssp EECCCGG----GCCSCBCCEEETT--CHHHHHHHHHHHHHHHH
T ss_pred CcccCcc----ccccceEEEEcCC--CHHHHHHHHHHHHHHHh
Confidence 111110 0011222234443 46788888888876543
No 492
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=20.86 E-value=2.5e+02 Score=24.06 Aligned_cols=62 Identities=19% Similarity=0.227 Sum_probs=41.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCC--EEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHc
Q 008619 18 LRVLLLDQDSSAAAELKFKLEAMDY--IVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA 86 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy--~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~I 86 (559)
.+|..+|-++...+..+..+...+. .+. ...+..+.+ ... ..||+|+++..+.+ -.++++.+
T Consensus 56 ~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~-~~~D~v~~~~~~~~---~~~~l~~~ 120 (192)
T 1l3i_A 56 RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEAL---CKI-PDIDIAVVGGSGGE---LQEILRII 120 (192)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHH---TTS-CCEEEEEESCCTTC---HHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhc---ccC-CCCCEEEECCchHH---HHHHHHHH
Confidence 5899999999999999888877654 333 455655532 221 36999999865444 34445444
No 493
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=20.82 E-value=3.7e+02 Score=26.26 Aligned_cols=87 Identities=10% Similarity=-0.001 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCC-CCC-CC---HHHHHHHcC-CCcEEEEecCCCH
Q 008619 28 SAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTT-SNT-DG---SFKFLETAK-DLPTIITSNIHCL 100 (559)
Q Consensus 28 ~~~~~L~~~L~~~gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~M-Pd~-md---G~eLLe~Ir-diPVImLSa~~d~ 100 (559)
..+..+....+..|..+. .+.+.+|+...+.- ..+|+|-+...- -+- .| -.+++..+. ++++|.-|+-...
T Consensus 137 ~~l~~l~~~a~~lGl~~lvEv~~~eE~~~A~~l--~g~~iIGinnr~l~t~~~d~~~~~~l~~~ip~~~~vIaEsGI~t~ 214 (251)
T 1i4n_A 137 EQIKEIYEAAEELGMDSLVEVHSREDLEKVFSV--IRPKIIGINTRDLDTFEIKKNVLWELLPLVPDDTVVVAESGIKDP 214 (251)
T ss_dssp HHHHHHHHHHHTTTCEEEEEECSHHHHHHHHTT--CCCSEEEEECBCTTTCCBCTTHHHHHGGGSCTTSEEEEESCCCCG
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhc--CCCCEEEEeCcccccCCCCHHHHHHHHHhCCCCCEEEEeCCCCCH
Confidence 344555555566788766 88899997766654 157888665532 110 11 123333343 5777777787889
Q ss_pred HHHHHHHHcCCCEEEeC
Q 008619 101 STMMKCIALGAVEFLRK 117 (559)
Q Consensus 101 e~v~kAi~~GA~DYLvK 117 (559)
+.+.++.++ |+.+|+-
T Consensus 215 edv~~~~~~-a~avLVG 230 (251)
T 1i4n_A 215 RELKDLRGK-VNAVLVG 230 (251)
T ss_dssp GGHHHHTTT-CSEEEEC
T ss_pred HHHHHHHHh-CCEEEEc
Confidence 999999999 9999974
No 494
>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}
Probab=20.79 E-value=2.6e+02 Score=28.72 Aligned_cols=109 Identities=10% Similarity=0.027 Sum_probs=60.8
Q ss_pred CCCCcEEEEEeCCH---HHHHHHHHHHhhCCCEEEE-E-C-CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHc-
Q 008619 14 FPKGLRVLLLDQDS---SAAAELKFKLEAMDYIVST-F-Y-NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA- 86 (559)
Q Consensus 14 ~p~glrVLIVDDD~---~~~~~L~~~L~~~gy~V~t-a-~-~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~I- 86 (559)
+|+.+||.||.--. .-...+..+....+++++. + . +.+.+-+...+ ..+. .... - .+--++++.-
T Consensus 34 ~m~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~--~g~~----~~~~-~-~~~~~ll~~~~ 105 (417)
T 3v5n_A 34 RQKRIRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRE--LGLD----PSRV-Y-SDFKEMAIREA 105 (417)
T ss_dssp -CCCEEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHH--HTCC----GGGB-C-SCHHHHHHHHH
T ss_pred cCCcceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHH--cCCC----cccc-c-CCHHHHHhccc
Confidence 45678999999886 3333334333333578763 4 3 34444333333 1110 0000 1 2445666652
Q ss_pred ---CCCcEEEEec--CCCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHH
Q 008619 87 ---KDLPTIITSN--IHCLSTMMKCIALGAVEFLRKPL--SEDKLRNLWQH 130 (559)
Q Consensus 87 ---rdiPVImLSa--~~d~e~v~kAi~~GA~DYLvKPi--s~eeL~~iIq~ 130 (559)
.++-+|+++. ..-.+.+..|+++|..=|+-||+ +.++....++.
T Consensus 106 ~~~~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~ 156 (417)
T 3v5n_A 106 KLKNGIEAVAIVTPNHVHYAAAKEFLKRGIHVICDKPLTSTLADAKKLKKA 156 (417)
T ss_dssp HCTTCCSEEEECSCTTSHHHHHHHHHTTTCEEEEESSSCSSHHHHHHHHHH
T ss_pred ccCCCCcEEEECCCcHHHHHHHHHHHhCCCeEEEECCCcCCHHHHHHHHHH
Confidence 2354444443 44577889999999999999996 66777765544
No 495
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=20.77 E-value=56 Score=30.51 Aligned_cols=76 Identities=11% Similarity=0.109 Sum_probs=40.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEE--EECCHHHHHHHhhcCCCCeeEEEEec-CCCCCCCHHHHHHHcC--CCc
Q 008619 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVS--TFYNENEALSAFSDKPENFHVAIVEV-TTSNTDGSFKFLETAK--DLP 90 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy~V~--ta~~~~eAL~~Lre~~~~pDLVIvDv-~MPd~mdG~eLLe~Ir--diP 90 (559)
.+++|+|+--....+.....+.+..|..+. .+.+..+.++.+.. .+|+||+|= +.=+ .+-+++++.+. +++
T Consensus 35 ~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~~---~~dvViIDEaqfl~-~~~v~~l~~l~~~~~~ 110 (191)
T 1xx6_A 35 AKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFEE---DTEVIAIDEVQFFD-DEIVEIVNKIAESGRR 110 (191)
T ss_dssp TTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCCT---TCSEEEECSGGGSC-THHHHHHHHHHHTTCE
T ss_pred CCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHhc---cCCEEEEECCCCCC-HHHHHHHHHHHhCCCE
Confidence 357888885222222222233445565433 55666666666543 489999983 2111 23466777654 678
Q ss_pred EEEEe
Q 008619 91 TIITS 95 (559)
Q Consensus 91 VImLS 95 (559)
||+..
T Consensus 111 Vi~~G 115 (191)
T 1xx6_A 111 VICAG 115 (191)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 77653
No 496
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=20.67 E-value=2.5e+02 Score=23.61 Aligned_cols=31 Identities=13% Similarity=0.180 Sum_probs=22.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEE
Q 008619 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTF 47 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta 47 (559)
..+|+|+.........+..+....||+++-+
T Consensus 4 ~~~vlIiGaG~~g~~l~~~l~~~~g~~vvg~ 34 (141)
T 3nkl_A 4 KKKVLIYGAGSAGLQLANMLRQGKEFHPIAF 34 (141)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHSSSEEEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEE
Confidence 3589999998888776666555458988844
No 497
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=20.64 E-value=45 Score=31.65 Aligned_cols=33 Identities=12% Similarity=0.098 Sum_probs=25.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC
Q 008619 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFY 48 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~ 48 (559)
++.+|+|||-.......+.+.|+..|+.+..+.
T Consensus 23 ~~~~I~iiD~g~~~~~~i~~~l~~~G~~~~vv~ 55 (218)
T 2vpi_A 23 MEGAVVILDAGAQYGKVIDRRVRELFVQSEIFP 55 (218)
T ss_dssp CTTCEEEEECSTTTTHHHHHHHHHTTCCEEEEC
T ss_pred cCCeEEEEECCCchHHHHHHHHHHCCCEEEEEE
Confidence 346899999776666788888998888777554
No 498
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}
Probab=20.62 E-value=84 Score=31.06 Aligned_cols=106 Identities=12% Similarity=0.153 Sum_probs=55.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEEEE
Q 008619 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIIT 94 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVImL 94 (559)
+.+||.||.--..-...+...|...+++++ .|....+..+.+.+. .. . ... - .+--++++. .++-+|++
T Consensus 3 ~~~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~-~~-~-----~~~-~-~~~~~ll~~-~~~D~V~i 72 (336)
T 2p2s_A 3 KKIRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSL-FP-S-----VPF-A-ASAEQLITD-ASIDLIAC 72 (336)
T ss_dssp -CCEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHH-ST-T-----CCB-C-SCHHHHHTC-TTCCEEEE
T ss_pred CccEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHh-cC-C-----Ccc-c-CCHHHHhhC-CCCCEEEE
Confidence 458999998643322223333445678876 444222222222220 10 0 000 0 223333331 14555555
Q ss_pred ec--CCCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHH
Q 008619 95 SN--IHCLSTMMKCIALGAVEFLRKPL--SEDKLRNLWQHV 131 (559)
Q Consensus 95 Sa--~~d~e~v~kAi~~GA~DYLvKPi--s~eeL~~iIq~v 131 (559)
+. ..-.+.+..|+++|..=|+-||+ +.++...+++.+
T Consensus 73 ~tp~~~h~~~~~~al~aGkhVl~EKP~a~~~~e~~~l~~~a 113 (336)
T 2p2s_A 73 AVIPCDRAELALRTLDAGKDFFTAKPPLTTLEQLDAVQRRV 113 (336)
T ss_dssp CSCGGGHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHH
T ss_pred eCChhhHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHH
Confidence 54 34567788999999999999997 556666655443
No 499
>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5
Probab=20.52 E-value=6.3e+02 Score=25.64 Aligned_cols=85 Identities=8% Similarity=0.069 Sum_probs=53.1
Q ss_pred EEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHc---C--C---CcEEEEecCCCHHHHHHHHHcCCCEE
Q 008619 43 IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA---K--D---LPTIITSNIHCLSTMMKCIALGAVEF 114 (559)
Q Consensus 43 ~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~I---r--d---iPVImLSa~~d~e~v~kAi~~GA~DY 114 (559)
.+.......+.++.+.. ..+|.|++|+.-.- .+--.+.+.+ . . .++++=+...+...+..++..|+++.
T Consensus 45 g~~l~i~~p~~~e~a~~--~GaD~vilDlEha~-~~~e~~~~~l~a~~~~~~~~~~~~VRv~~~~~~di~~~LdaGa~gI 121 (339)
T 1izc_A 45 GVAHGIPSTFVTKVLAA--TKPDFVWIDVEHGM-FNRLELHDAIHAAQHHSEGRSLVIVRVPKHDEVSLSTALDAGAAGI 121 (339)
T ss_dssp EEEECSCCHHHHHHHHH--TCCSEEEEETTTSC-CCHHHHHHHHHHHHHHTTTCSEEEEECCTTCHHHHHHHHHHTCSEE
T ss_pred EEEEECCCHHHHHHHHh--CCCCEEEEECCCCC-CcHHHHHHHHHHhhhcCCCCCeEEEEeCCCCHHHHHHHHhCCCCEE
Confidence 34433334455565655 56999999996544 3333333323 2 3 66666666667888999999999875
Q ss_pred Ee-CCCCHHHHHHHHHH
Q 008619 115 LR-KPLSEDKLRNLWQH 130 (559)
Q Consensus 115 Lv-KPis~eeL~~iIq~ 130 (559)
++ |--+.+++..++..
T Consensus 122 mlP~V~saee~~~~~~~ 138 (339)
T 1izc_A 122 VIPHVETVEEVREFVKE 138 (339)
T ss_dssp EETTCCCHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHH
Confidence 54 33367888775443
No 500
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=20.50 E-value=1.2e+02 Score=32.47 Aligned_cols=62 Identities=13% Similarity=0.205 Sum_probs=43.8
Q ss_pred HHHHHHhhcCCCCeeEEEEecCCCCCCC-HHHHHHHcC----CCcEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008619 51 NEALSAFSDKPENFHVAIVEVTTSNTDG-SFKFLETAK----DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (559)
Q Consensus 51 ~eAL~~Lre~~~~pDLVIvDv~MPd~md-G~eLLe~Ir----diPVImLSa~~d~e~v~kAi~~GA~DYLv 116 (559)
.+..+.+.+ ..+|+|.+|...+. .. -+++++.++ ++|||+ ..-...+.+..++++||+.+.+
T Consensus 233 ~~~a~~l~~--aG~d~I~id~a~g~-~~~~~~~i~~ir~~~p~~~Vi~-g~v~t~e~a~~l~~aGaD~I~V 299 (496)
T 4fxs_A 233 EERVKALVE--AGVDVLLIDSSHGH-SEGVLQRIRETRAAYPHLEIIG-GNVATAEGARALIEAGVSAVKV 299 (496)
T ss_dssp HHHHHHHHH--TTCSEEEEECSCTT-SHHHHHHHHHHHHHCTTCCEEE-EEECSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHh--ccCceEEecccccc-chHHHHHHHHHHHHCCCceEEE-cccCcHHHHHHHHHhCCCEEEE
Confidence 444445555 46999999998776 43 346666664 678776 3345678889999999998876
Done!