BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008620
(559 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 565 bits (1456), Expect = e-161, Method: Compositional matrix adjust.
Identities = 281/562 (50%), Positives = 379/562 (67%), Gaps = 11/562 (1%)
Query: 1 MSLEVSASPAKVIQNAGKDSTRGSANFPPSIWGDHFFQYTCDSQETDDQNVK-HLELKKE 59
M+ +VS P+ ++ KD R A+F PSIWGD F C + D + K H +LK+E
Sbjct: 1 MASQVSQMPSSSPLSSNKDEMRPKADFQPSIWGDLFL--NCPDKNIDAETEKRHQQLKEE 58
Query: 60 IRRMLKA-VNKTSHTLELIDAIQRLGVSYHFESEIDEILGKMHKTYRDCDLCDNENDELY 118
+R+M+ A + ++ L ID++QRLGVSYHF EI++ L ++ D END LY
Sbjct: 59 VRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDA-----END-LY 112
Query: 119 YISLQFRLFRQNGYRISADVFNTFEGSDGKFKASLAKDVRGMLSLYEATHLRVHGENILD 178
S++FRL R++GY +S DVFN F+ G FK+S+ DVRG+L LY+A++LRVHGE+ILD
Sbjct: 113 TTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILD 172
Query: 179 EALAFTTSHLESVAKQVCSPLAEQVKHALVQPIHKGLERLEARHYIPIYQGESSHNEALL 238
EA++FTT HL + PL+E+V HAL Q I +GL R+EARHY+ +YQ SHN+ALL
Sbjct: 173 EAISFTTHHLSLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALL 232
Query: 239 TFAKLDFNGLQKLHQKELGDISRWWKELDFAHKLPFVRDRIAEVYFWAVGVHFEPQYSFA 298
FAK+DFN LQ LH+KEL +I RWWK+LDF KLP+ RDR+ E YFW GV+FEPQYS
Sbjct: 233 EFAKIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLG 292
Query: 299 RKLFTKVIYMTSIIDDIYDVYGKIEELDLFTSAIERWDINAIDQLPEYMKLCYRALINVY 358
RK+ TKVI M SI+DD YD Y EEL +T+AIERWDI ID++PEYMK Y+AL++VY
Sbjct: 293 RKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVY 352
Query: 359 SEVEKDLASQAKLYRLHYAKEAMKNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPN 418
E+ + +A + YR+ YAK AM + Y EAKW QNY P+ +E+ AL + G+
Sbjct: 353 EEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAM 412
Query: 419 LSAISFVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMASHKFEQSRGHVASSVECY 478
L+ SFVGMGDIVT E+F+W S+P+ I+AS + R M+D+A HKF+ R S++ECY
Sbjct: 413 LAITSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECY 472
Query: 479 INQYGATEEEAYSEFRKQVSNAWKDINEECLRPTVVPVPLLIRILNLTRAADVIYKYKDG 538
+ +YG T +EAY F K V +AWKD+N+E L+PT +P +L R LNL R DV+Y+ DG
Sbjct: 473 MEEYGVTAQEAYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDG 532
Query: 539 YT-DSEELKDFIVSLLINPVPI 559
YT + K I SLLI P+ +
Sbjct: 533 YTYVGKAAKGGITSLLIEPIAL 554
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 514 bits (1325), Expect = e-146, Method: Compositional matrix adjust.
Identities = 259/555 (46%), Positives = 374/555 (67%), Gaps = 14/555 (2%)
Query: 10 AKVIQNAGKDSTRGSANFPPSIWGDHFFQYTCDSQETDDQNVKHLELKKEIRRMLKAVN- 68
+ + N ++ R A+F PS+WGD F ++ D+Q + + LK++ R ML A
Sbjct: 3 SAAVANYEEEIVRPVADFSPSLWGDQFLSFSIDNQVAEKYAQEIEALKEQTRSMLLATGR 62
Query: 69 KTSHTLELIDAIQRLGVSYHFESEIDEILGKMHKTYRDC-DLCDNENDELYYISLQFRLF 127
K + TL LID I+RLG+SYHFE EIDEIL +++ +C DLC + +LQFRL
Sbjct: 63 KLADTLNLIDIIERLGISYHFEKEIDEILDQIYNQNSNCNDLCTS--------ALQFRLL 114
Query: 128 RQNGYRISADVFNTFEGSDGKFKASLAKDVRGMLSLYEATHLRVHGENILDEALAFTTSH 187
RQ+G+ IS ++F+ F+ +GKFK SLA DV G+L+LYEA+H+R H ++IL++ALAF+T H
Sbjct: 115 RQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIH 174
Query: 188 LESVAKQVCSPLAEQVKHALVQPIHKGLERLEARHYIP-IYQGESSHNEALLTFAKLDFN 246
LES A + SPL EQV HAL Q +HKG+ R+E R +I IY E S N LL FAKLDFN
Sbjct: 175 LESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFN 234
Query: 247 GLQKLHQKELGDISRWWKELDFAHKLPFVRDRIAEVYFWAVGVHFEPQYSFARKLFTKVI 306
LQ LH++EL +SRWWK+LDF LP+ RDR+ E YFWA+GV+FEPQYS AR + K I
Sbjct: 235 LLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTI 294
Query: 307 YMTSIIDDIYDVYGKIEELDLFTSAIERWDINAIDQLPEYMKLCYRALINVYSEVEKDLA 366
M SI+DD +D YG ++EL+ +T AI+RWDIN ID+LP+YMK+ Y+A++++Y + EK+L+
Sbjct: 295 SMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELS 354
Query: 367 SQAKLYRLHYAKEAMKNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPNLSAISFVG 426
S + + + +A E MK V++Y E+ W+ + Y P V EY++ AL ++ + L+ S++G
Sbjct: 355 SAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLG 414
Query: 427 MGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMASHKFEQSRGHVASSVECYINQYGATE 486
M T++ FEWL NP+ + AS + R+++D A+++ E+SRG +A+ +EC + YG +
Sbjct: 415 MKS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGIST 473
Query: 487 EEAYSEFRKQVSNAWKDINEECLRPTVVPVPLLIRILNLTRAADVIYKYK-DGYTDSEE- 544
+EA ++F+ AWKDINE LRPT V L ILNL R +V Y + DGYT EE
Sbjct: 474 KEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEEV 533
Query: 545 LKDFIVSLLINPVPI 559
LK I++LL++ + I
Sbjct: 534 LKPHIINLLVDSIKI 548
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 514 bits (1324), Expect = e-146, Method: Compositional matrix adjust.
Identities = 260/556 (46%), Positives = 377/556 (67%), Gaps = 16/556 (2%)
Query: 10 AKVIQNAGKDSTRGSANFPPSIWGDHFFQYTCDSQETDDQNVKHLE-LKKEIRRMLKAVN 68
+ + N ++ R A+F PS+WGD F ++ D+Q ++ K +E LK++ R ML A
Sbjct: 3 SAAVANYEEEIVRPVADFSPSLWGDQFLSFSIDNQ-VAEKYAKEIEALKEQTRNMLLATG 61
Query: 69 -KTSHTLELIDAIQRLGVSYHFESEIDEILGKMHKTYRDC-DLCDNENDELYYISLQFRL 126
K + TL LID I+RLG+SYHFE EID+IL +++ +C DLC + +LQFRL
Sbjct: 62 MKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCNDLCTS--------ALQFRL 113
Query: 127 FRQNGYRISADVFNTFEGSDGKFKASLAKDVRGMLSLYEATHLRVHGENILDEALAFTTS 186
RQ+G+ IS ++F+ F+ +GKFK SLA DV G+L+LYEA+H+R H ++IL++ALAF+T
Sbjct: 114 LRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTI 173
Query: 187 HLESVAKQVCSPLAEQVKHALVQPIHKGLERLEARHYIP-IYQGESSHNEALLTFAKLDF 245
HLES A + SPL EQV HAL Q +HKG+ R+E R +I IY E S N LL FAKLDF
Sbjct: 174 HLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDF 233
Query: 246 NGLQKLHQKELGDISRWWKELDFAHKLPFVRDRIAEVYFWAVGVHFEPQYSFARKLFTKV 305
N LQ LH++EL +SRWWK+LDF LP+ RDR+ E YFWA+GV+FEPQYS AR + K
Sbjct: 234 NLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKT 293
Query: 306 IYMTSIIDDIYDVYGKIEELDLFTSAIERWDINAIDQLPEYMKLCYRALINVYSEVEKDL 365
I M SI+DD +D YG ++EL+ +T AI+RWDIN ID+LP+YMK+ Y+A++++Y + EK+L
Sbjct: 294 ISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKEL 353
Query: 366 ASQAKLYRLHYAKEAMKNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPNLSAISFV 425
+S + + + +A E MK V++Y E+ W+ + Y P V EY++ AL ++ + L+ S++
Sbjct: 354 SSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYL 413
Query: 426 GMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMASHKFEQSRGHVASSVECYINQYGAT 485
GM T++ FEWL NP+ + AS + R+++D A+++ E+SRG +A+ +EC + YG +
Sbjct: 414 GMKS-ATEQDFEWLSKNPKILEASVIIWRVIDDTATYEVEKSRGQIATGIECCMRDYGIS 472
Query: 486 EEEAYSEFRKQVSNAWKDINEECLRPTVVPVPLLIRILNLTRAADVIYKYK-DGYTDSEE 544
+EA ++F+ AWKDINE LRPT V L ILNL R +V Y + DGYT EE
Sbjct: 473 TKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEE 532
Query: 545 -LKDFIVSLLINPVPI 559
LK I++LL++ + I
Sbjct: 533 VLKPHIINLLVDSIKI 548
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 513 bits (1321), Expect = e-145, Method: Compositional matrix adjust.
Identities = 258/555 (46%), Positives = 374/555 (67%), Gaps = 14/555 (2%)
Query: 10 AKVIQNAGKDSTRGSANFPPSIWGDHFFQYTCDSQETDDQNVKHLELKKEIRRMLKAVN- 68
+ + N ++ R A+F PS+WGD F ++ D+Q + + LK++ R ML A
Sbjct: 3 SAAVANYEEEIVRPVADFSPSLWGDQFLSFSIDNQVAEKYAQEIEALKEQTRSMLLATGR 62
Query: 69 KTSHTLELIDAIQRLGVSYHFESEIDEILGKMHKTYRDC-DLCDNENDELYYISLQFRLF 127
K + TL LID I+RLG+SYHFE EIDEIL +++ +C DLC + +LQFRL
Sbjct: 63 KLADTLNLIDIIERLGISYHFEKEIDEILDQIYNQNSNCNDLCTS--------ALQFRLL 114
Query: 128 RQNGYRISADVFNTFEGSDGKFKASLAKDVRGMLSLYEATHLRVHGENILDEALAFTTSH 187
RQ+G+ IS ++F+ F+ +GKFK SLA DV G+L+LYEA+H+R H ++IL++ALAF+T H
Sbjct: 115 RQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIH 174
Query: 188 LESVAKQVCSPLAEQVKHALVQPIHKGLERLEARHYIP-IYQGESSHNEALLTFAKLDFN 246
LES A + SPL EQV HAL Q +HKG+ R+E R +I IY E S N LL FAKLDFN
Sbjct: 175 LESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFN 234
Query: 247 GLQKLHQKELGDISRWWKELDFAHKLPFVRDRIAEVYFWAVGVHFEPQYSFARKLFTKVI 306
LQ LH++EL +SRWWK+LDF LP+ RDR+ E YFWA+GV+FEPQYS AR + K I
Sbjct: 235 LLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTI 294
Query: 307 YMTSIIDDIYDVYGKIEELDLFTSAIERWDINAIDQLPEYMKLCYRALINVYSEVEKDLA 366
M SI+DD +D YG ++EL+ +T AI+RWDIN ID+LP+YMK+ Y+A++++Y + EK+L+
Sbjct: 295 SMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELS 354
Query: 367 SQAKLYRLHYAKEAMKNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPNLSAISFVG 426
S + + + +A E MK V++Y E+ W+ + Y P V EY++ AL ++ + L+ S++G
Sbjct: 355 SAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLG 414
Query: 427 MGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMASHKFEQSRGHVASSVECYINQYGATE 486
M T++ FEWL NP+ + AS + R+++D A+++ E+SRG +A+ +EC + YG +
Sbjct: 415 MKS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGIST 473
Query: 487 EEAYSEFRKQVSNAWKDINEECLRPTVVPVPLLIRILNLTRAADVIYKYK-DGYTDSEE- 544
+EA ++F+ AWKDINE LRPT V L ILNL R +V Y + DGYT E+
Sbjct: 474 KEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKV 533
Query: 545 LKDFIVSLLINPVPI 559
LK I++LL++ + I
Sbjct: 534 LKPHIINLLVDSIKI 548
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 513 bits (1320), Expect = e-145, Method: Compositional matrix adjust.
Identities = 259/556 (46%), Positives = 377/556 (67%), Gaps = 16/556 (2%)
Query: 10 AKVIQNAGKDSTRGSANFPPSIWGDHFFQYTCDSQETDDQNVKHLE-LKKEIRRMLKAVN 68
+ + N ++ R A+F PS+WGD F ++ D+Q ++ K +E LK++ R ML A
Sbjct: 3 SAAVANYEEEIVRPVADFSPSLWGDQFLSFSIDNQ-VAEKYAKEIEALKEQTRNMLLATG 61
Query: 69 -KTSHTLELIDAIQRLGVSYHFESEIDEILGKMHKTYRDC-DLCDNENDELYYISLQFRL 126
K + TL LID I+RLG+SYHFE EID+IL +++ +C DLC + +LQFRL
Sbjct: 62 MKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCNDLCTS--------ALQFRL 113
Query: 127 FRQNGYRISADVFNTFEGSDGKFKASLAKDVRGMLSLYEATHLRVHGENILDEALAFTTS 186
RQ+G+ IS ++F+ F+ +GKFK SLA DV G+L+LYEA+H+R H ++IL++ALAF+T
Sbjct: 114 LRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTI 173
Query: 187 HLESVAKQVCSPLAEQVKHALVQPIHKGLERLEARHYIP-IYQGESSHNEALLTFAKLDF 245
HLES A + SPL EQV HAL Q +HKG+ R+E R +I IY E S N LL FAKLDF
Sbjct: 174 HLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDF 233
Query: 246 NGLQKLHQKELGDISRWWKELDFAHKLPFVRDRIAEVYFWAVGVHFEPQYSFARKLFTKV 305
N LQ LH++EL +SRWWK+LDF LP+ RDR+ E YFWA+GV+FEPQYS AR + K
Sbjct: 234 NLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKT 293
Query: 306 IYMTSIIDDIYDVYGKIEELDLFTSAIERWDINAIDQLPEYMKLCYRALINVYSEVEKDL 365
I M SI+DD +D YG ++EL+ +T AI+RWDIN ID+LP+YMK+ Y+A++++Y + EK+L
Sbjct: 294 ISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKEL 353
Query: 366 ASQAKLYRLHYAKEAMKNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPNLSAISFV 425
+S + + + +A E MK V++Y E+ W+ + Y P V EY++ AL ++ + L+ S++
Sbjct: 354 SSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYL 413
Query: 426 GMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMASHKFEQSRGHVASSVECYINQYGAT 485
GM T++ FEWL NP+ + AS + R+++D A+++ E+SRG +A+ +EC + YG +
Sbjct: 414 GMKS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGIS 472
Query: 486 EEEAYSEFRKQVSNAWKDINEECLRPTVVPVPLLIRILNLTRAADVIYKYK-DGYTDSEE 544
+EA ++F+ AWKDINE LRPT V L ILNL R +V Y + DGYT E+
Sbjct: 473 TKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEK 532
Query: 545 -LKDFIVSLLINPVPI 559
LK I++LL++ + I
Sbjct: 533 VLKPHIINLLVDSIKI 548
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 510 bits (1313), Expect = e-145, Method: Compositional matrix adjust.
Identities = 258/556 (46%), Positives = 376/556 (67%), Gaps = 16/556 (2%)
Query: 10 AKVIQNAGKDSTRGSANFPPSIWGDHFFQYTCDSQETDDQNVKHLE-LKKEIRRMLKAVN 68
+ + N ++ R A+F PS+WGD F ++ +Q ++ K +E LK++ R ML A
Sbjct: 5 SAAVANYEEEIVRPVADFSPSLWGDQFLSFSIKNQ-VAEKYAKEIEALKEQTRNMLLATG 63
Query: 69 -KTSHTLELIDAIQRLGVSYHFESEIDEILGKMHKTYRDC-DLCDNENDELYYISLQFRL 126
K + TL LID I+RLG+SYHFE EID+IL +++ +C DLC + +LQFRL
Sbjct: 64 MKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCNDLCTS--------ALQFRL 115
Query: 127 FRQNGYRISADVFNTFEGSDGKFKASLAKDVRGMLSLYEATHLRVHGENILDEALAFTTS 186
RQ+G+ IS ++F+ F+ +GKFK SLA DV G+L+LYEA+H+R H ++IL++ALAF+T
Sbjct: 116 LRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTI 175
Query: 187 HLESVAKQVCSPLAEQVKHALVQPIHKGLERLEARHYIP-IYQGESSHNEALLTFAKLDF 245
HLES A + SPL EQV HAL Q +HKG+ R+E R +I IY E S N LL FAKLDF
Sbjct: 176 HLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDF 235
Query: 246 NGLQKLHQKELGDISRWWKELDFAHKLPFVRDRIAEVYFWAVGVHFEPQYSFARKLFTKV 305
N LQ LH++EL +SRWWK+LDF LP+ RDR+ E YFWA+GV+FEPQYS AR + K
Sbjct: 236 NLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKT 295
Query: 306 IYMTSIIDDIYDVYGKIEELDLFTSAIERWDINAIDQLPEYMKLCYRALINVYSEVEKDL 365
I M SI+DD +D YG ++EL+ +T AI+RWDIN ID+LP+YMK+ Y+A++++Y + EK+L
Sbjct: 296 ISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKEL 355
Query: 366 ASQAKLYRLHYAKEAMKNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPNLSAISFV 425
+S + + + +A E MK V++Y E+ W+ + Y P V EY++ AL ++ + L+ S++
Sbjct: 356 SSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYL 415
Query: 426 GMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMASHKFEQSRGHVASSVECYINQYGAT 485
GM T++ FEWL NP+ + AS + R+++D A+++ E+SRG +A+ +EC + YG +
Sbjct: 416 GMKS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGIS 474
Query: 486 EEEAYSEFRKQVSNAWKDINEECLRPTVVPVPLLIRILNLTRAADVIYKYK-DGYTDSEE 544
+EA ++F+ AWKDINE LRPT V L ILNL R +V Y + DGYT E+
Sbjct: 475 TKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEK 534
Query: 545 -LKDFIVSLLINPVPI 559
LK I++LL++ + I
Sbjct: 535 VLKPHIINLLVDSIKI 550
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 509 bits (1311), Expect = e-144, Method: Compositional matrix adjust.
Identities = 259/556 (46%), Positives = 376/556 (67%), Gaps = 16/556 (2%)
Query: 10 AKVIQNAGKDSTRGSANFPPSIWGDHFFQYTCDSQETDDQNVKHLE-LKKEIRRMLKAVN 68
+ + N ++ R A+F PS+WGD F ++ D+Q ++ K +E LK++ R ML A
Sbjct: 3 SAAVANYEEEIVRPVADFSPSLWGDQFLSFSIDNQ-VAEKYAKEIEALKEQTRNMLLATG 61
Query: 69 -KTSHTLELIDAIQRLGVSYHFESEIDEILGKMHKTYRDC-DLCDNENDELYYISLQFRL 126
K + TL LID I+RLG+SYHFE EID+IL +++ +C DLC + +LQFRL
Sbjct: 62 MKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCNDLCTS--------ALQFRL 113
Query: 127 FRQNGYRISADVFNTFEGSDGKFKASLAKDVRGMLSLYEATHLRVHGENILDEALAFTTS 186
RQ+G+ IS ++F+ F+ +GKFK SLA DV G+L+LYEA+H+R H ++IL++ALAF+T
Sbjct: 114 LRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTI 173
Query: 187 HLESVAKQVCSPLAEQVKHALVQPIHKGLERLEARHYIP-IYQGESSHNEALLTFAKLDF 245
HLES A + SPL EQV HAL Q +HKG+ R+E R +I IY E S N LL FAKLDF
Sbjct: 174 HLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDF 233
Query: 246 NGLQKLHQKELGDISRWWKELDFAHKLPFVRDRIAEVYFWAVGVHFEPQYSFARKLFTKV 305
N LQ LH++EL +SRWWK+LDF LP+ RDR+ E YF A+GV+FEPQYS AR + K
Sbjct: 234 NLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFSALGVYFEPQYSQARVMLVKT 293
Query: 306 IYMTSIIDDIYDVYGKIEELDLFTSAIERWDINAIDQLPEYMKLCYRALINVYSEVEKDL 365
I M SI+DD +D YG ++EL+ +T AI+RWDIN ID+LP+YMK+ Y+A++++Y + EK+L
Sbjct: 294 ISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKEL 353
Query: 366 ASQAKLYRLHYAKEAMKNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPNLSAISFV 425
+S + + + +A E MK V++Y E+ W+ + Y P V EY++ AL ++ + L+ S++
Sbjct: 354 SSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYL 413
Query: 426 GMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMASHKFEQSRGHVASSVECYINQYGAT 485
GM T++ FEWL NP+ + AS + R+++D A+++ E+SRG +A+ +EC + YG +
Sbjct: 414 GMKS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGIS 472
Query: 486 EEEAYSEFRKQVSNAWKDINEECLRPTVVPVPLLIRILNLTRAADVIYKYK-DGYTDSEE 544
+EA ++F+ AWKDINE LRPT V L ILNL R +V Y + DGYT EE
Sbjct: 473 TKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEE 532
Query: 545 -LKDFIVSLLINPVPI 559
LK I++LL++ + I
Sbjct: 533 VLKPHIINLLVDSIKI 548
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 509 bits (1310), Expect = e-144, Method: Compositional matrix adjust.
Identities = 259/556 (46%), Positives = 376/556 (67%), Gaps = 16/556 (2%)
Query: 10 AKVIQNAGKDSTRGSANFPPSIWGDHFFQYTCDSQETDDQNVKHLE-LKKEIRRMLKAVN 68
+ + N ++ R A+F PS+WGD F ++ D+Q ++ K +E LK++ R ML A
Sbjct: 3 SAAVANYEEEIVRPVADFSPSLWGDQFLSFSIDNQ-VAEKYAKEIEALKEQTRNMLLATG 61
Query: 69 -KTSHTLELIDAIQRLGVSYHFESEIDEILGKMHKTYRDC-DLCDNENDELYYISLQFRL 126
K + TL LID I+RLG+SYHFE EID+IL +++ +C DLC + +LQFRL
Sbjct: 62 MKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCNDLCTS--------ALQFRL 113
Query: 127 FRQNGYRISADVFNTFEGSDGKFKASLAKDVRGMLSLYEATHLRVHGENILDEALAFTTS 186
RQ+G+ IS ++F+ F+ +GKFK SLA DV G+L+LYEA+H+R H ++IL++ALAF+T
Sbjct: 114 LRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTI 173
Query: 187 HLESVAKQVCSPLAEQVKHALVQPIHKGLERLEARHYIP-IYQGESSHNEALLTFAKLDF 245
HLES A + SPL EQV HAL Q +HKG+ R+E R +I IY E S N LL FAKLDF
Sbjct: 174 HLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDF 233
Query: 246 NGLQKLHQKELGDISRWWKELDFAHKLPFVRDRIAEVYFWAVGVHFEPQYSFARKLFTKV 305
N LQ LH++EL +SRWWK+LDF LP+ RDR+ E YF A+GV+FEPQYS AR + K
Sbjct: 234 NLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFSALGVYFEPQYSQARVMLVKT 293
Query: 306 IYMTSIIDDIYDVYGKIEELDLFTSAIERWDINAIDQLPEYMKLCYRALINVYSEVEKDL 365
I M SI+DD +D YG ++EL+ +T AI+RWDIN ID+LP+YMK+ Y+A++++Y + EK+L
Sbjct: 294 ISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKEL 353
Query: 366 ASQAKLYRLHYAKEAMKNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPNLSAISFV 425
+S + + + +A E MK V++Y E+ W+ + Y P V EY++ AL ++ + L+ S++
Sbjct: 354 SSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYL 413
Query: 426 GMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMASHKFEQSRGHVASSVECYINQYGAT 485
GM T++ FEWL NP+ + AS + R+++D A+++ E+SRG +A+ +EC + YG +
Sbjct: 414 GMKS-ATEQDFEWLSKNPKILEASVIIWRVIDDTATYEVEKSRGQIATGIECCMRDYGIS 472
Query: 486 EEEAYSEFRKQVSNAWKDINEECLRPTVVPVPLLIRILNLTRAADVIYKYK-DGYTDSEE 544
+EA ++F+ AWKDINE LRPT V L ILNL R +V Y + DGYT EE
Sbjct: 473 TKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEE 532
Query: 545 -LKDFIVSLLINPVPI 559
LK I++LL++ + I
Sbjct: 533 VLKPHIINLLVDSIKI 548
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 508 bits (1308), Expect = e-144, Method: Compositional matrix adjust.
Identities = 257/545 (47%), Positives = 371/545 (68%), Gaps = 16/545 (2%)
Query: 21 TRGSANFPPSIWGDHFFQYTCDSQETDDQNVKHLE-LKKEIRRMLKAVN-KTSHTLELID 78
R A+F PS+WGD F ++ +Q ++ K +E LK++ R ML A K + TL LID
Sbjct: 1 VRPVADFSPSLWGDQFLSFSIKNQ-VAEKYAKEIEALKEQTRNMLLATGMKLADTLNLID 59
Query: 79 AIQRLGVSYHFESEIDEILGKMHKTYRDC-DLCDNENDELYYISLQFRLFRQNGYRISAD 137
I+RLG+SYHFE EID+IL +++ +C DLC + +LQFRL RQ+G+ IS +
Sbjct: 60 TIERLGISYHFEKEIDDILDQIYNQNSNCNDLCTS--------ALQFRLLRQHGFNISPE 111
Query: 138 VFNTFEGSDGKFKASLAKDVRGMLSLYEATHLRVHGENILDEALAFTTSHLESVAKQVCS 197
+F+ F+ +GKFK SLA DV G+L+LYEA+H+R H ++IL++ALAF+T HLES A + S
Sbjct: 112 IFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKS 171
Query: 198 PLAEQVKHALVQPIHKGLERLEARHYIP-IYQGESSHNEALLTFAKLDFNGLQKLHQKEL 256
PL EQV HAL Q +HKG+ R+E R +I IY E S N LL FAKLDFN LQ LH++EL
Sbjct: 172 PLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQEL 231
Query: 257 GDISRWWKELDFAHKLPFVRDRIAEVYFWAVGVHFEPQYSFARKLFTKVIYMTSIIDDIY 316
+SRWWK+LDF LP+ RDR+ E YFWA+GV+FEPQYS AR + K I M SI+DD +
Sbjct: 232 AQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTF 291
Query: 317 DVYGKIEELDLFTSAIERWDINAIDQLPEYMKLCYRALINVYSEVEKDLASQAKLYRLHY 376
D YG ++EL+ +T AI+RWDIN ID+LP+YMK+ Y+A++++Y + EK+L+S + + + +
Sbjct: 292 DAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCH 351
Query: 377 AKEAMKNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPNLSAISFVGMGDIVTKESF 436
A E MK V++Y E+ W+ + Y P V EY++ AL ++ + L+ S++GM T++ F
Sbjct: 352 AIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQDF 410
Query: 437 EWLFSNPRSIRASCAVGRLMNDMASHKFEQSRGHVASSVECYINQYGATEEEAYSEFRKQ 496
EWL NP+ + AS + R+++D A+++ E+SRG +A+ +EC + YG + +EA ++F+
Sbjct: 411 EWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNM 470
Query: 497 VSNAWKDINEECLRPTVVPVPLLIRILNLTRAADVIYKYK-DGYTDSEE-LKDFIVSLLI 554
AWKDINE LRPT V L ILNL R +V Y + DGYT E+ LK I++LL+
Sbjct: 471 AETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHIINLLV 530
Query: 555 NPVPI 559
+ + I
Sbjct: 531 DSIKI 535
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 508 bits (1308), Expect = e-144, Method: Compositional matrix adjust.
Identities = 257/556 (46%), Positives = 375/556 (67%), Gaps = 16/556 (2%)
Query: 10 AKVIQNAGKDSTRGSANFPPSIWGDHFFQYTCDSQETDDQNVKHLE-LKKEIRRMLKAVN 68
+ + N ++ R A+F PS+WGD F ++ +Q ++ K +E LK++ R ML A
Sbjct: 5 SAAVANYEEEIVRPVADFSPSLWGDQFLSFSIKNQ-VAEKYAKEIEALKEQTRNMLLATG 63
Query: 69 -KTSHTLELIDAIQRLGVSYHFESEIDEILGKMHKTYRDC-DLCDNENDELYYISLQFRL 126
K + TL LID I+RLG+SYHFE EID+IL +++ +C DLC + +LQFRL
Sbjct: 64 MKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCNDLCTS--------ALQFRL 115
Query: 127 FRQNGYRISADVFNTFEGSDGKFKASLAKDVRGMLSLYEATHLRVHGENILDEALAFTTS 186
RQ+G+ IS ++F+ F+ +GKFK SLA DV G+L+LYEA+H+R H ++IL++ALAF+T
Sbjct: 116 LRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTI 175
Query: 187 HLESVAKQVCSPLAEQVKHALVQPIHKGLERLEARHYIP-IYQGESSHNEALLTFAKLDF 245
HLES A + SPL EQV HAL Q +HKG+ R+E R +I IY E S N LL FAKLDF
Sbjct: 176 HLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDF 235
Query: 246 NGLQKLHQKELGDISRWWKELDFAHKLPFVRDRIAEVYFWAVGVHFEPQYSFARKLFTKV 305
N LQ LH++EL +SRWWK+LDF LP+ RDR+ E YFW +GV+FEPQYS AR + K
Sbjct: 236 NLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWTLGVYFEPQYSQARVMLVKT 295
Query: 306 IYMTSIIDDIYDVYGKIEELDLFTSAIERWDINAIDQLPEYMKLCYRALINVYSEVEKDL 365
I M SI+DD +D YG ++EL+ +T AI+RWDIN ID+LP+YMK+ Y+A++++Y + EK+L
Sbjct: 296 ISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKEL 355
Query: 366 ASQAKLYRLHYAKEAMKNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPNLSAISFV 425
+S + + + +A E MK V++Y E+ W+ + Y P V EY++ AL ++ + L+ S++
Sbjct: 356 SSAGRSHIVCHAIERMKEIVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYLLATTSYL 415
Query: 426 GMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMASHKFEQSRGHVASSVECYINQYGAT 485
GM T++ FEWL NP+ + AS + R+++D A+++ E+SRG +A+ +EC + YG +
Sbjct: 416 GMKS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGIS 474
Query: 486 EEEAYSEFRKQVSNAWKDINEECLRPTVVPVPLLIRILNLTRAADVIYKYK-DGYTDSEE 544
+EA ++F+ AWKDINE LRPT V L ILNL R +V Y + DGYT E+
Sbjct: 475 TKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIIEVTYIHNLDGYTHPEK 534
Query: 545 -LKDFIVSLLINPVPI 559
LK I++LL++ + I
Sbjct: 535 VLKPHIINLLVDSIKI 550
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 356 bits (913), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 204/540 (37%), Positives = 303/540 (56%), Gaps = 8/540 (1%)
Query: 22 RGSANFPPSIWGDHFFQYTCDSQETDD-QNVKHLELKKEIRRMLKAVNKTSHTL-ELIDA 79
R SA++ P+ W D+ F + D+ E+ + K +L+ E+RR + TL ELID
Sbjct: 15 RRSADYEPNSW-DYDFLLSSDTDESIEVYKDKAKKLEAEVRREINNEKAEFLTLLELIDN 73
Query: 80 IQRLGVSYHFESEIDEILGKMHKTYRDCDLCDNENDELYYISLQFRLFRQNGYRISADVF 139
+QRLG+ Y FES+I L + + L+ +L FRL RQ+G+ +S + F
Sbjct: 74 VQRLGLGYRFESDIRRALDRFVSS---GGFDGVTKTSLHATALSFRLLRQHGFEVSQEAF 130
Query: 140 NTFEGSDGKFKASLAKDVRGMLSLYEATHLRVHGENILDEALAFTTSHLESVAKQ-VCSP 198
+ F+ +G F +L +D + +LSLYEA+ L + GENILDEA F SHL+ ++++ +
Sbjct: 131 SGFKDQNGNFLENLKEDTKAILSLYEASFLALEGENILDEARVFAISHLKELSEEKIGKE 190
Query: 199 LAEQVKHALVQPIHKGLERLEARHYIPIYQGESSHNEALLTFAKLDFNGLQKLHQKELGD 258
LAEQV HAL P+H+ +RLEA I Y+ + N+ LL A LD+N +Q ++Q++L +
Sbjct: 191 LAEQVNHALELPLHRRTQRLEAVWSIEAYRKKEDANQVLLELAILDYNMIQSVYQRDLRE 250
Query: 259 ISRWWKELDFAHKLPFVRDRIAEVYFWAVGVHFEPQYSFARKLFTKVIYMTSIIDDIYDV 318
SRWW+ + A KL F RDR+ E ++WAVGV FEPQYS R K+ +IIDDIYDV
Sbjct: 251 TSRWWRRVGLATKLHFARDRLIESFYWAVGVAFEPQYSDCRNSVAKMFSFVTIIDDIYDV 310
Query: 319 YGKIEELDLFTSAIERWDINAIDQLPEYMKLCYRALINVYSEVEKDLASQAKLYRLHYAK 378
YG ++EL+LFT A+ERWD+NAI+ LP+YMKLC+ AL N +E+ D L Y
Sbjct: 311 YGTLDELELFTDAVERWDVNAINDLPDYMKLCFLALYNTINEIAYDNLKDKGENILPYLT 370
Query: 379 EAMKNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPNLSAISFVGMGDIVTKESFEW 438
+A + + EAKW + PT D+Y A SS P ++ + + KE E
Sbjct: 371 KAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAVVQNIKKEEIEN 430
Query: 439 LFSNPRSIRASCAVGRLMNDMASHKFEQSRGHVASSVECYINQYGATEEEAYSEFRKQVS 498
L I + RL ND+AS E +RG A+SV CY+ G +EE A +
Sbjct: 431 LQKYHDIISRPSHIFRLCNDLASASAEIARGETANSVSCYMRTKGISEELATESVMNLID 490
Query: 499 NAWKDINEECLRPTVVPVPLLIRILNLTRAADVIYKYKDGYTDSEEL-KDFIVSLLINPV 557
WK +N+E L ++ P + +NL R + Y D +T +EL + ++S++ P+
Sbjct: 491 ETWKKMNKEKLGGSLFAKPFVETAINLARQSHCTYHNGDAHTSPDELTRKRVLSVITEPI 550
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 355 bits (911), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 196/544 (36%), Positives = 314/544 (57%), Gaps = 11/544 (2%)
Query: 22 RGSANFPPSIWGDHFFQYTCDSQETDDQNV-KHLELKKEIRRMLKAVNKTSHTLELIDAI 80
R S N+ P++W ++ Q + ++ T+++++ + EL ++R +LK + LELI +
Sbjct: 6 RRSGNYQPALWDSNYIQ-SLNTPYTEERHLDRKAELIVQVRILLKEKMEPVQQLELIHDL 64
Query: 81 QRLGVSYHFESEIDEILGKMHKTYRDCDLCDNENDELYYISLQFRLFRQNGYRISADVFN 140
+ LG+S F+ EI EILG ++ ++ + E +LY+ +L FRL RQ+G+ IS DVFN
Sbjct: 65 KYLGLSDFFQDEIKEILGVIYNEHKCFHNNEVEKMDLYFTALGFRLLRQHGFNISQDVFN 124
Query: 141 TFEGSDG-KFKASLAKDVRGMLSLYEATHLRVHGENILDEALAFTTSHLESVAKQVCSPL 199
F+ G FKASLA+D +GML LYEA+ L GE+ L+ A F T L+ + + +
Sbjct: 125 CFKNEKGIDFKASLAQDTKGMLQLYEASFLLRKGEDTLELAREFATKCLQKKLDEGGNEI 184
Query: 200 AEQ----VKHALVQPIHKGLERLEARHYIPIYQGESSHNEALLTFAKLDFNGLQKLHQKE 255
E ++H+L P+H ++ +EAR +I Y N + AKL+FN +Q HQ+E
Sbjct: 185 DENLLLWIRHSLDLPLHWRIQSVEARWFIDAYARRPDMNPLIFELAKLNFNIIQATHQQE 244
Query: 256 LGDISRWWKELDFAHKLPFVRDRIAEVYFWAVGVHFEP-QYSFARKLFTKVIYMTSIIDD 314
L D+SRWW L F KLPFVRDR+ E +FWAVG+ FEP Q+ + RK+ +I + ++IDD
Sbjct: 245 LKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGM-FEPHQHGYQRKMAATIIVLATVIDD 303
Query: 315 IYDVYGKIEELDLFTSAIERWDINAIDQLPEYMKLCYRALINVYSEVEKDLASQAKLYRL 374
IYDVYG ++EL+LFT +RWD +I +LP YM+LCY + N S+ D+ + + L
Sbjct: 304 IYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGFFCL 363
Query: 375 HYAKEAMKNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPNLSAISFVGMGDIVTKE 434
Y ++++ + V+ YF EAKWYH Y P++DEY+ +A IS P + + ++ +
Sbjct: 364 QYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTFANASHDT 423
Query: 435 S-FEWLFSNPRSIRASCAVGRLMNDMASHKFEQSRGHVASSVECYINQYGATEEEAYSEF 493
+ + L+ + + + RL +D+ + FE +RG V +++CY+ + A+EEEA
Sbjct: 424 AVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQCYMKETNASEEEAVEHV 483
Query: 494 RKQVSNAWKDINEECLRPTVVPVPLLIRILNLTRAADVIYKYKDGY-TDSEELKDFIVSL 552
+ + AWKD+N P ++ N+ R A IY + DG+ + + I L
Sbjct: 484 KFLIREAWKDMNTAIAAGYPFPDGMVAGAANIGRVAQFIYLHGDGFGVQHSKTYEHIAGL 543
Query: 553 LINP 556
L P
Sbjct: 544 LFEP 547
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 328 bits (841), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 193/525 (36%), Positives = 294/525 (56%), Gaps = 21/525 (4%)
Query: 24 SANFPPSIWGDHFFQYTCDSQETDDQNV-KHLELKKEIRRMLKAVNKTSHTLELIDAIQR 82
+ + P++W Q + DS+ +++++ + + +++ ML+ + LELID ++R
Sbjct: 37 TGGYQPTLWDFSTIQ-SFDSEYKEEKHLMRAAGMIDQVKMMLQEEVDSIRRLELIDDLRR 95
Query: 83 LGVSYHFESEIDEILGKMHKTYRDCDLCDNENDE--LYYISLQFRLFRQNGYRISADVFN 140
LG+S HFE EI EIL + T +NE DE LY +L+FRL RQ + +S +VF+
Sbjct: 96 LGISCHFEREIVEILNSKYYT-------NNEIDERDLYSTALRFRLLRQYDFSVSQEVFD 148
Query: 141 TFEGSDGK-FKASLAKDVRGMLSLYEATHLRVHGENILDEALAFTTSHLES---VAKQVC 196
F+ + G FK SL D RG+L LYEA+ L GE L A F T L+ V K +
Sbjct: 149 CFKNAKGTDFKPSLVDDTRGLLQLYEASFLSAQGEETLRLARDFATKFLQKRVLVDKDI- 207
Query: 197 SPLAEQVKHALVQPIHKGLERLEARHYIPIYQGESSHNEALLTFAKLDFNGLQKLHQKEL 256
L ++ AL P H ++ AR +I Y+ N +L AKLDFN +Q Q+EL
Sbjct: 208 -NLLSSIERALELPTHWRVQMPNARSFIDAYKRRPDMNPTVLELAKLDFNMVQAQFQQEL 266
Query: 257 GDISRWWKELDFAHKLPFVRDRIAEVYFWAVGVHFEPQYSFARKLFTKVIYMTSIIDDIY 316
+ SRWW H+LPFVRDRI E Y+W GV Q+ + R + TK+ + + IDD++
Sbjct: 267 KEASRWWNSTGLVHELPFVRDRIVECYYWTTGVVERRQHGYERIMLTKINALVTTIDDVF 326
Query: 317 DVYGKIEELDLFTSAIERWDINAIDQLPEYMKLCYRALINVYSEVEKDLASQAKLYRLHY 376
D+YG +EEL LFT+AI+RWDI ++ QLP YM++CY AL N +E+ D Y
Sbjct: 327 DIYGTLEELQLFTTAIQRWDIESMKQLPPYMQICYLALFNFVNEMAYDTLRDKGFDSTPY 386
Query: 377 AKEAMKNQVKHYFFEAKWYHQNYIPTVDEYMTVALIS-SGHPNLSAISFVGMGDIVTKES 435
++ ++ Y EAKWY++ + P+++EYM + IS G P LS + F + D + +E+
Sbjct: 387 LRKVWVGLIESYLIEAKWYYKGHKPSLEEYMKNSWISIGGIPILSHL-FFRLTDSIEEEA 445
Query: 436 FEWLFSNPRSIRASCAVGRLMNDMASHKFEQSRGHVASSVECYINQYGATEEEAYSEFRK 495
E + +RASC + RL +DM + E RG V SV+CY+N+ A+EEEA R
Sbjct: 446 AESMHKYHDIVRASCTILRLADDMGTSLDEVERGDVPKSVQCYMNEKNASEEEAREHVRS 505
Query: 496 QVSNAWKDINEECLRPTVVPVPLLIRILNLTRAADVIYKYK-DGY 539
+ WK +N+E + + + + NL R A IY+++ DG+
Sbjct: 506 LIDQTWKMMNKEMMTSSFSKYFVEVSA-NLARMAQWIYQHESDGF 549
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 322 bits (824), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 182/524 (34%), Positives = 288/524 (54%), Gaps = 8/524 (1%)
Query: 22 RGSANFPPSIWGDHFFQYTCDSQETDDQNVKHLELKKEIRRMLKAVNKTSHTLELIDAIQ 81
R S N+ PS W +F Q + D ++ EL ++ L+ LELID +Q
Sbjct: 2 RRSGNYNPSRWDVNFIQSLLSDYKEDKHVIRASELVTLVKMELEKETDQIRQLELIDDLQ 61
Query: 82 RLGVSYHFESEIDEILGKM---HKTYRDCDLCDNENDELYYISLQFRLFRQNGYRISADV 138
R+G+S HF++E EIL + H Y++ E +LY SL FRL R++G++++ +V
Sbjct: 62 RMGLSDHFQNEFKEILSSIYLDHHYYKNP--FPKEERDLYSTSLAFRLLREHGFQVAQEV 119
Query: 139 FNTFEGSDGKFKASLAKDVRGMLSLYEATHLRVHGENILDEALAFTTSHLESVAKQ--VC 196
F++F+ +G+FK SL+ D RG+L LYEA+ L GE L+ A F T LE + V
Sbjct: 120 FDSFKNEEGEFKESLSDDTRGLLQLYEASFLLTEGETTLESAREFATKFLEEKVNEGGVD 179
Query: 197 SPLAEQVKHALVQPIHKGLERLEARHYIPIYQGESSHNEALLTFAKLDFNGLQKLHQKEL 256
L ++ ++L P+H ++R A +I Y+ N +L A LD N +Q Q+EL
Sbjct: 180 GDLLTRIAYSLDIPLHWRIKRPNAPVWIEWYRKRPDMNPVVLELAILDLNIVQAQFQEEL 239
Query: 257 GDISRWWKELDFAHKLPFVRDRIAEVYFWAVGVHFEPQYSFARKLFTKVIYMTSIIDDIY 316
+ RWW+ F KLPF RDR+ E YFW G+ Q++ AR + KV + ++IDDIY
Sbjct: 240 KESFRWWRNTGFVEKLPFARDRLVECYFWNTGIIEPRQHASARIMMGKVNALITVIDDIY 299
Query: 317 DVYGKIEELDLFTSAIERWDINAIDQLPEYMKLCYRALINVYSEVEKDLASQAKLYRLHY 376
DVYG +EEL+ FT I RWDIN+IDQLP+YM+LC+ AL N + D+ + + + Y
Sbjct: 300 DVYGTLEELEQFTDLIRRWDINSIDQLPDYMQLCFLALNNFVDDTSYDVMKEKGVNVIPY 359
Query: 377 AKEAMKNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPNLSAISFVGMGDIVTKESF 436
+++ + Y EA+W++ + P+++EY+ + S P + F + D TKE+
Sbjct: 360 LRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCMLTHIFFRVTDSFTKETV 419
Query: 437 EWLFSNPRSIRASCAVGRLMNDMASHKFEQSRGHVASSVECYINQYGATEEEAYSEFRKQ 496
+ L+ +R S V RL +D+ + E SRG V S++CY++ Y A+E EA +
Sbjct: 420 DSLYKYHDLVRWSSFVLRLADDLGTSVEEVSRGDVPKSLQCYMSDYNASEAEARKHVKWL 479
Query: 497 VSNAWKDIN-EECLRPTVVPVPLLIRILNLTRAADVIYKYKDGY 539
++ WK +N E + + + ++L R A ++Y DG+
Sbjct: 480 IAEVWKKMNAERVSKDSPFGKDFIGCAVDLGRMAQLMYHNGDGH 523
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 283 bits (725), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 176/520 (33%), Positives = 286/520 (55%), Gaps = 38/520 (7%)
Query: 74 LELIDAIQRLGVSYHFESEIDEILGKMHKTYRDCDLC---DNENDELYYISLQFRLFRQN 130
L ++D I RLG+ HFE EI E L +++ + + + N +L +L FRL R +
Sbjct: 302 LLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGFRLLRLH 361
Query: 131 GYRISADVFNTFEGSDGKFKASLA---KDVRGMLSLYEATHLRVHGENILDEALAFTTSH 187
Y +S +F+ F+ ++GKF S KDV ML+LY A+ L GENILDEA +F T +
Sbjct: 362 RYNVSPAIFDNFKDANGKFICSTGQFNKDVASMLNLYRASQLAFPGENILDEAKSFATKY 421
Query: 188 L-ESVAKQVCSP-------LAEQVKHALVQPIHKGLERLEARHYIPIYQGESS------- 232
L E++ K S L++++K+AL H + R+EA+ Y +Y+ + +
Sbjct: 422 LREALEKSETSSAWNNKQNLSQEIKYALKTSWHASVPRVEAKRYCQVYRPDYARIAKCVY 481
Query: 233 -----HNEALLTFAKLDFNGLQKLHQKELGDISRWWKELDFAHKLP---FVRDRIAEVYF 284
+NE L KLDFN +Q +HQ+E+ +++ W+++ LP F R+R E YF
Sbjct: 482 KLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVTSWFRD----SGLPLFTFARERPLEFYF 537
Query: 285 WAVGVHFEPQYSFARKLFTKVIYMTSIIDDIYDVYGKIEELDLFTSAIERWDINAIDQLP 344
+EPQY+ R LFTKV + +++DD+YD YG ++EL LFT A+ RWD++ + LP
Sbjct: 538 LVAAGTYEPQYAKCRFLFTKVACLQTVLDDMYDTYGTLDELKLFTEAVRRWDLSFTENLP 597
Query: 345 EYMKLCYRALINVYSEVEKDLASQAKLYRLHYAKEAMKNQVKHYFFEAKWYHQNYIPTVD 404
+YMKLCY+ ++ EV + + + + ++ ++ + Y+ EA+W Y+PT+D
Sbjct: 598 DYMKLCYQIYYDIVHEVAWEAEKEQGRELVSFFRKGWEDYLLGYYEEAEWLAAEYVPTLD 657
Query: 405 EYMTVALISSGHPNLSAISFVGM-GDIVTKESFEWLFSNPRSI--RASCAVGRLMNDMAS 461
EY+ + S G L + M G ++++E+ E + R + + + RL +D +
Sbjct: 658 EYIKNGITSIGQRILLLSGVLIMDGQLLSQEALEKVDYPGRRVLTELNSLISRLADDTKT 717
Query: 462 HKFEQSRGHVASSVECYINQYG-ATEEEAYSEFRKQVSNAWKDINEECLRPTVVPVPLLI 520
+K E++RG +ASS+ECY+ + TEEEA + A K++ E L+P VP
Sbjct: 718 YKAEKARGELASSIECYMKDHPECTEEEALDHIYSILEPAVKELTREFLKPDDVPFACKK 777
Query: 521 RILNLTRAADVIYKYKDGYTDSE-ELKDFIVSLLINPVPI 559
+ TR VI+K DG+ S+ E+KD I LI P+P+
Sbjct: 778 MLFEETRVTMVIFKDGDGFGVSKLEVKDHIKECLIEPLPL 817
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 267 bits (683), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 158/510 (30%), Positives = 274/510 (53%), Gaps = 31/510 (6%)
Query: 77 IDAIQRLGVSYHFESEIDEILGKMHKTYRDCDLC---DNENDELYYISLQFRLFRQNGYR 133
+D ++RLG+ HF+ EI E L ++ + + + +N ++ ++ R+ R +GY
Sbjct: 277 VDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDTAMGLRILRLHGYN 336
Query: 134 ISADVFNTFEGSDGKFKASLAKDVRG---MLSLYEATHLRVHGENILDEALAFTTSHLES 190
+S+DV TF +G+F L + RG ML++ +H+ GE I++EA T +L +
Sbjct: 337 VSSDVLKTFRDENGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGETIMEEAKLCTERYLRN 396
Query: 191 VAKQVCS--------PLAEQVKHALVQPIHKGLERLEARHYIP------IYQGESSH--- 233
+ V + + +V++AL P HK + RLEAR YI ++ G++ +
Sbjct: 397 ALENVDAFDKWAFKKNIRGEVEYALKYPWHKSMPRLEARSYIENYGPDDVWLGKTVYMMP 456
Query: 234 ---NEALLTFAKLDFNGLQKLHQKELGDISRWWKELDFAHKLPFVRDRIAEVYFWAVGVH 290
NE L AKLDFN +Q +HQ EL D+ RWWK F L F R+R+ E+YF
Sbjct: 457 YISNEKYLELAKLDFNKVQSIHQTELQDLRRWWKSSGFTD-LNFTRERVTEIYFSPASFI 515
Query: 291 FEPQYSFARKLFTKVIYMTSIIDDIYDVYGKIEELDLFTSAIERWDINAIDQLPEYMKLC 350
FEP++S R+++TK T I+DD+YD +G +++L LFT +++RWD++ +DQ+P+ MK+C
Sbjct: 516 FEPEFSKCREVYTKTSNFTVILDDLYDAHGSLDDLKLFTESVKRWDLSLVDQMPQQMKIC 575
Query: 351 YRALINVYSEVEKDLASQAKLYRLHYAKEAMKNQVKHYFFEAKWYHQNYIPTVDEYMTVA 410
+ N ++++ K+ + L Y + K Q++ Y EA+W Y+P+ +EY+ A
Sbjct: 576 FVGFYNTFNDIAKEGRERQGRDVLGYIQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIENA 635
Query: 411 LISSGHPNLSAISFVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMASHKFEQSRGH 470
+S + IS + G+++T E + R ++ GRL+ND +++ E+ +G
Sbjct: 636 SVSIALGTVVLISALFTGEVLTDEVLSKIDRESRFLQLMGLTGRLVNDTKTYQAERGQGE 695
Query: 471 VASSVECYINQYGA-TEEEAYSEFRKQVSNAWKDINEECLRPTVVPVPLLIRILNLTRAA 529
VAS+++CY+ + +EEEA + NA +++N E + +P + R
Sbjct: 696 VASAIQCYMKDHPKISEEEALQHVYSVMENALEELNREFVN-NKIPDIYKRLVFETARIM 754
Query: 530 DVIYKYKDGYTDSE--ELKDFIVSLLINPV 557
+ Y DG T S E+K+ + + L PV
Sbjct: 755 QLFYMQGDGLTLSHDMEIKEHVKNCLFQPV 784
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 253 bits (645), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 158/510 (30%), Positives = 267/510 (52%), Gaps = 27/510 (5%)
Query: 74 LELIDAIQRLGVSYHFESEIDEILGKMHKTYRDCDLC---DNENDELYYISLQFRLFRQN 130
L L+D I+ LG+ HF+ EI L +++ + + + D+ +L +L R R +
Sbjct: 250 LSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRTLRMH 309
Query: 131 GYRISADVFNTFEGSDGKFKASLAK---DVRGMLSLYEATHLRVHGENILDEALAFTTSH 187
GY +S+DV N F+ +G+F +S + ++R +++L+ A+ L E +D+A F +
Sbjct: 310 GYNVSSDVLNNFKDENGRFFSSAGQTHVELRSVVNLFRASDLAFPDERAMDDARKFAEPY 369
Query: 188 L-ESVAKQVCS--PLAEQVKHALVQPIHKGLERLEARHYI------------PIYQGESS 232
L E++A ++ + L +++++ + P H + RLEAR YI +Y+ S
Sbjct: 370 LREALATKISTNTKLFKEIEYVVEYPWHMSIPRLEARSYIDSYDDNYVWQRKTLYRMPSL 429
Query: 233 HNEALLTFAKLDFNGLQKLHQKELGDISRWWKELDFAHKLPFVRDRIAEVYFWAVGVHFE 292
N L AKLDFN +Q LHQ+EL ++RWWKE A + F R R+AEVYF FE
Sbjct: 430 SNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGMA-DINFTRHRVAEVYF--SSATFE 486
Query: 293 PQYSFARKLFTKVIYMTSIIDDIYDVYGKIEELDLFTSAIERWDINAIDQLPEYMKLCYR 352
P+YS R FTK+ + + DD+ D++ ++EL FT ++RWD + + ++PE M+ C++
Sbjct: 487 PEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTSLLHEIPECMQTCFK 546
Query: 353 ALINVYSEVEKDLASQAKLYRLHYAKEAMKNQVKHYFFEAKWYHQNYIPTVDEYMTVALI 412
+ EV D+ L + ++ + Y E +W YIPT +EY+ I
Sbjct: 547 VWFKLMEEVNNDVVKVQGRDMLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKTYAI 606
Query: 413 SSGHPNLSAISFVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMASHKFEQSRGHVA 472
S G + + MG++V + E + RL ND +++ E++RG A
Sbjct: 607 SVGLGPCTLQPILLMGELVKDDVVEKVHYPSNMFELVSLSWRLTNDTKTYQAEKARGQQA 666
Query: 473 SSVECYI-NQYGATEEEAYSEFRKQVSNAWKDINEECLRPTV-VPVPLLIRILNLTRAAD 530
S + CY+ + GATEE+A + V A K+ + E +P+ +P+ I NL
Sbjct: 667 SGIACYMKDNPGATEEDAIKHICRVVDRALKEASFEYFKPSNDIPMGCKSFIFNLRLCVQ 726
Query: 531 VIYKYKDGY-TDSEELKDFIVSLLINPVPI 559
+ YK+ DGY +EE+KD+I + I+P+ +
Sbjct: 727 IFYKFIDGYGIANEEIKDYIRKVYIDPIQV 756
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
(S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate
pdb|3PYB|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|B Chain B, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|C Chain C, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
Length = 727
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 124/256 (48%), Gaps = 29/256 (11%)
Query: 76 LIDAIQRLGVSYHFESEIDEILGKMHKTYRDCDLCDNENDELYYI---SLQFRLFRQNGY 132
++D +QRLG+S +FE EI E L +H+ + D +C + I ++ FRL RQ+GY
Sbjct: 251 IVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTAMAFRLLRQHGY 310
Query: 133 RISADVFNTFEGSDGKFKASLAKD---VRGMLSLYEATHLRVHGENILDEALAFTTSHL- 188
++SADVF FE +G+F + + V GM +LY A+ L E IL A F+ ++L
Sbjct: 311 QVSADVFKNFE-KEGEFFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNAKEFSYNYLL 369
Query: 189 ------ESVAKQVC-SPLAEQVKHALVQPIHKGLERLEARHYIPIYQGESS--------- 232
E + K + L ++ AL P + L R+E R YI Y GE+
Sbjct: 370 EKREREELIDKWIIMKDLPGEIGFALEIPWYASLPRVETRFYIDQYGGENDVWIGKTLYR 429
Query: 233 ----HNEALLTFAKLDFNGLQKLHQKELGDISRWWKELDFAHKLPFVRDRIAEVYFWAVG 288
+N L AK D+N Q HQ E +W++E + + R + E Y+ A
Sbjct: 430 MPYVNNNGYLELAKQDYNNCQAQHQLEWDIFQKWYEENRLS-EWGVRRSELLECYYLAAA 488
Query: 289 VHFEPQYSFARKLFTK 304
FE + S R ++ K
Sbjct: 489 TIFESERSHERMVWAK 504
>pdb|3GS3|A Chain A, Structure Of The N-Terminal Heat Domain Of Symplekin From
D. Melanogaster
Length = 257
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 51/113 (45%), Gaps = 19/113 (16%)
Query: 108 DLCDNENDELYYISLQFRLFRQNGYRISADVFNTFEGSD-----GKFKASLAKDVRGMLS 162
D+ DNEND + +++F G V +F D G F SLA DV +
Sbjct: 151 DMIDNENDGIRTNAIKFL----EGVV----VLQSFADEDSLKRDGDF--SLA-DVPDHCT 199
Query: 163 LYEATHLRVHGENILDEALAF-TTSHLESVAKQVCSPLAEQVKHALVQPIHKG 214
L+ L+ G NILD L F T+H+ SV C+ + A ++PI G
Sbjct: 200 LFRREKLQEEGNNILDILLQFHGTTHISSVNLIACT--SSLCTIAKMRPIFMG 250
>pdb|2XTA|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2Y0P|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2YIC|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YID|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2XT9|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Alpha-
Ketoglutarate Decarboxylase In Complex With Gara
Length = 868
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 136 ADVFNTFEGSDGKFKASLAKDVRGMLSLYEATHLRVHGENILDEALAFTTSHLESV 191
+ +F+ FEG+ +A + DV+ L T++++ G+N ++ +L SHLE+V
Sbjct: 196 SQIFSEFEGNLNPSQAHGSGDVKYHLGAT-GTYIQMFGDNDIEVSLTANPSHLEAV 250
>pdb|2XT6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer
(Orthorhombic Form)
pdb|2XT6|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer
(Orthorhombic Form)
Length = 1113
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 136 ADVFNTFEGSDGKFKASLAKDVRGMLSLYEATHLRVHGENILDEALAFTTSHLESV 191
+ +F+ FEG+ +A + DV+ L T++++ G+N ++ +L SHLE+V
Sbjct: 441 SQIFSEFEGNLNPSQAHGSGDVKYHLGA-TGTYIQMFGDNDIEVSLTANPSHLEAV 495
>pdb|1KJW|A Chain A, Sh3-Guanylate Kinase Module From Psd-95
Length = 295
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 185 TSHLESVAKQVCSPLAEQVKHALVQPIHKGLERLEARHYIPI 226
SHL + Q +AEQ KH ++ + RL+A H PI
Sbjct: 176 NSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPI 217
>pdb|1JXM|A Chain A, Crystal Structure Of The Gmp Bound Sh3-Hook-Gk Fragment Of
Psd-95
pdb|1JXO|A Chain A, Crystal Structure Of The Sh3-Hook-Gk Fragment Of Psd-95
pdb|1JXO|B Chain B, Crystal Structure Of The Sh3-Hook-Gk Fragment Of Psd-95
Length = 301
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 185 TSHLESVAKQVCSPLAEQVKHALVQPIHKGLERLEARHYIPI 226
SHL + Q +AEQ KH ++ + RL+A H PI
Sbjct: 182 NSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPI 223
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 185 TSHLESVAKQVCSPLAEQVKHALVQPIHKGLERLEARHYIPI 226
SHL + Q +AEQ KH ++ + RL+A H PI
Sbjct: 602 NSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPI 643
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,783,981
Number of Sequences: 62578
Number of extensions: 710054
Number of successful extensions: 1787
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1685
Number of HSP's gapped (non-prelim): 32
length of query: 559
length of database: 14,973,337
effective HSP length: 104
effective length of query: 455
effective length of database: 8,465,225
effective search space: 3851677375
effective search space used: 3851677375
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)