Query 008620
Match_columns 559
No_of_seqs 247 out of 921
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 07:48:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008620.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008620hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g4d_A (+)-delta-cadinene synt 100.0 2E-168 6E-173 1375.8 49.6 534 18-559 18-554 (554)
2 3m00_A Aristolochene synthase; 100.0 2E-167 5E-172 1367.2 50.8 536 15-559 10-550 (550)
3 3n0f_A Isoprene synthase; terp 100.0 3E-166 1E-170 1359.5 46.5 535 20-558 13-551 (555)
4 2ong_A 4S-limonene synthase; m 100.0 1E-160 5E-165 1321.6 48.7 536 22-558 2-543 (543)
5 1n1b_A (+)-bornyl diphosphate 100.0 2E-160 7E-165 1320.0 44.4 538 20-558 4-549 (549)
6 2j5c_A 1,8-cineole synthase; t 100.0 5E-160 2E-164 1320.5 41.7 535 16-558 29-569 (569)
7 3sdr_A Alpha-bisabolene syntha 100.0 1E-143 4E-148 1226.5 47.8 506 52-559 274-817 (817)
8 3p5p_A Taxadiene synthase; cla 100.0 5E-143 2E-147 1214.3 50.5 502 53-559 223-756 (764)
9 3s9v_A Abietadiene synthase, c 100.0 4E-143 1E-147 1217.7 48.4 502 53-558 247-785 (785)
10 3pya_A ENT-copalyl diphosphate 100.0 2E-109 6E-114 930.7 35.2 452 51-558 220-720 (727)
11 1ps1_A Pentalenene synthase; a 100.0 2.1E-51 7E-56 428.1 18.1 251 249-508 15-270 (337)
12 1di1_A Aristolochene synthase; 100.0 3.1E-49 1.1E-53 404.7 21.2 242 251-508 13-264 (300)
13 3bny_A Aristolochene synthase; 100.0 5.7E-48 1.9E-52 399.4 18.8 246 247-508 23-278 (320)
14 3kb9_A EPI-isozizaene synthase 100.0 7.1E-46 2.4E-50 393.8 21.4 243 259-508 66-312 (382)
15 3v1v_A 2-MIB synthase, 2-methy 100.0 6.7E-33 2.3E-37 297.6 20.2 247 254-508 129-390 (433)
16 1yyq_A Trichodiene synthase; t 99.8 8.2E-18 2.8E-22 177.2 16.3 229 257-506 33-275 (374)
17 3sdr_A Alpha-bisabolene syntha 97.1 0.00012 4.1E-09 84.0 1.8 46 19-65 22-68 (817)
18 3acx_A Dehydrosqualene synthas 87.5 20 0.00067 35.6 16.8 180 297-506 38-231 (293)
19 4hd1_A Squalene synthase HPNC; 86.3 27 0.00094 34.6 17.0 156 298-488 40-199 (294)
20 3ipi_A Geranyltranstransferase 83.7 5 0.00017 40.3 10.1 142 372-527 127-277 (295)
21 3lmd_A Geranylgeranyl pyrophos 82.9 8.2 0.00028 39.9 11.6 86 372-464 160-247 (360)
22 3rmg_A Octaprenyl-diphosphate 74.9 49 0.0017 33.6 14.4 89 371-464 132-221 (334)
23 3oyr_A Trans-isoprenyl diphosp 74.1 47 0.0016 33.9 14.0 89 371-464 150-239 (345)
24 3mzv_A Decaprenyl diphosphate 72.8 72 0.0025 32.4 15.1 88 371-463 138-226 (341)
25 2ftz_A Geranyltranstransferase 69.3 43 0.0015 33.2 12.1 121 372-506 134-264 (284)
26 3ts7_A Geranyltranstransferase 67.4 40 0.0014 34.1 11.6 111 382-505 158-281 (324)
27 1rtr_A Geranyltranstransferase 67.0 23 0.00079 35.4 9.7 111 382-506 148-271 (301)
28 3p8l_A Geranyltranstransferase 65.9 34 0.0012 34.3 10.7 112 382-506 156-279 (302)
29 3m0g_A Farnesyl diphosphate sy 65.0 21 0.00071 35.8 8.8 111 382-506 147-269 (297)
30 3apz_A Geranyl diphosphate syn 64.0 66 0.0023 32.6 12.6 88 372-464 153-241 (348)
31 1wy0_A Geranylgeranyl pyrophos 63.8 47 0.0016 33.7 11.4 86 372-463 137-224 (342)
32 3p8r_A Geranyltranstransferase 62.8 28 0.00094 34.9 9.3 112 382-506 158-282 (302)
33 3pko_A Geranylgeranyl pyrophos 60.7 83 0.0028 31.8 12.6 103 372-481 143-258 (334)
34 4dhd_A Polyprenyl synthetase; 60.1 46 0.0016 34.1 10.6 89 372-463 132-231 (358)
35 3lsn_A Geranyltranstransferase 59.0 38 0.0013 33.9 9.5 110 384-505 154-275 (304)
36 2h8o_A Geranyltranstransferase 58.3 41 0.0014 34.2 9.8 111 382-506 192-315 (335)
37 4f62_A Geranyltranstransferase 57.4 44 0.0015 33.8 9.7 111 383-506 152-275 (317)
38 3lom_A Geranyltranstransferase 52.9 53 0.0018 33.0 9.4 113 382-505 158-282 (313)
39 3pde_A Farnesyl-diphosphate sy 50.9 84 0.0029 31.5 10.5 111 383-506 156-278 (309)
40 3uca_A Geranyltranstransferase 50.0 76 0.0026 32.0 10.1 112 382-506 180-304 (324)
41 3llw_A Geranyltranstransferase 47.8 49 0.0017 33.3 8.2 112 381-505 158-280 (311)
42 3nf2_A Putative polyprenyl syn 46.1 91 0.0031 31.8 10.1 86 373-463 144-230 (352)
43 3npk_A Geranyltranstransferase 45.9 1.8E+02 0.006 28.8 11.9 113 381-506 144-266 (291)
44 1rqj_A Geranyltranstransferase 44.5 92 0.0031 30.9 9.6 112 382-506 152-276 (299)
45 1wmw_A Geranylgeranyl diphosph 41.7 1.2E+02 0.004 30.5 10.0 85 372-463 130-218 (330)
46 1pd3_A Nonstructural protein N 37.4 21 0.00073 26.2 2.5 33 51-83 15-48 (58)
47 2j1p_A Geranylgeranyl pyrophos 37.3 38 0.0013 33.6 5.4 109 383-506 161-272 (293)
48 2her_A Fragment, farnesyl pyro 36.8 1.3E+02 0.0046 30.8 9.6 87 372-463 168-260 (368)
49 2qis_A Farnesyl pyrophosphate 36.5 1.8E+02 0.0061 29.8 10.6 88 372-463 176-270 (374)
50 1uby_A FPS, farnesyl diphospha 36.4 1.6E+02 0.0053 30.2 10.1 89 372-464 169-264 (367)
51 2q80_A Geranylgeranyl pyrophos 35.0 1.9E+02 0.0063 28.7 10.1 85 371-463 110-195 (301)
52 2e8v_A Geranylgeranyl pyrophos 29.3 1E+02 0.0035 31.2 7.1 86 373-464 132-221 (340)
53 1v4e_A Octoprenyl-diphosphate 29.2 2.5E+02 0.0087 27.7 10.0 84 371-464 126-211 (299)
54 1yhl_A Farnesyl pyrophosphate 28.5 1.5E+02 0.0053 30.0 8.4 88 372-463 151-256 (362)
55 2azj_A Geranylgeranyl pyrophos 28.4 2.6E+02 0.0088 27.5 9.8 117 373-506 136-258 (289)
56 3aqb_B Component B of hexapren 28.1 1.4E+02 0.0048 29.9 7.9 89 372-464 130-218 (325)
57 3kra_B Geranyl diphosphate syn 25.9 75 0.0026 31.2 5.3 70 384-459 151-221 (274)
58 3tc1_A Octaprenyl pyrophosphat 22.1 5.8E+02 0.02 25.2 14.2 83 372-463 122-206 (315)
59 3s9v_A Abietadiene synthase, c 22.1 32 0.0011 39.1 1.9 40 26-65 5-45 (785)
60 3fau_A NEDD4-binding protein 2 21.8 70 0.0024 25.2 3.4 23 482-504 6-28 (82)
No 1
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=100.00 E-value=1.6e-168 Score=1375.83 Aligned_cols=534 Identities=51% Similarity=0.897 Sum_probs=497.2
Q ss_pred CCccCCCCCCCCCCCCcCCccccCCCchhhHHHHHHHH-HHHHHHHHhhh-ccCcccchhHHHHHHHhCcccccHHHHHH
Q 008620 18 KDSTRGSANFPPSIWGDHFFQYTCDSQETDDQNVKHLE-LKKEIRRMLKA-VNKTSHTLELIDAIQRLGVSYHFESEIDE 95 (559)
Q Consensus 18 ~~~~r~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~~~~-lk~~v~~~~~~-~~~~~~~l~lID~lqrLGi~~hFe~EI~~ 95 (559)
.++.||+||||||+|||+||++ +. ++..+.+.+|++ ||++||+||.+ ..|++++|+|||+||||||+|||++||++
T Consensus 18 ~~~~R~~~~~~ps~W~~~fl~~-~~-~~~~~~~~~~~e~Lk~eVr~~l~~~~~~~~~~l~lID~lqrLGi~~hF~~EI~~ 95 (554)
T 3g4d_A 18 KDEMRPKADFQPSIWGDLFLNC-PD-KNIDAETEKRHQQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIED 95 (554)
T ss_dssp -------CCCCCCTTTTTTTSC-CC----CHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHHTTCGGGCHHHHHH
T ss_pred CCCCCCCCCCCccccccccccC-CC-chhhHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHcCchhhhHHHHHH
Confidence 4468999999999999999997 43 334677899999 99999999976 47899999999999999999999999999
Q ss_pred HHHHhHhcCCCCCCCCCCCCChhHHHHHHHHhhhcCccccccccccccccccccccccccChHHHHhHhhhcccCCCCcc
Q 008620 96 ILGKMHKTYRDCDLCDNENDELYYISLQFRLFRQNGYRISADVFNTFEGSDGKFKASLAKDVRGMLSLYEATHLRVHGEN 175 (559)
Q Consensus 96 ~L~~i~~~~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vS~dvf~~F~d~~g~F~~~l~~d~~glL~LYeAs~l~~~gE~ 175 (559)
+|++||+. + .. ...||++|||+|||||||||+||||||++|+|++|+|++++.+||+|||||||||||++|||+
T Consensus 96 ~L~~i~~~-~----~~-~~~dl~~~al~FRlLR~hGy~VS~dvf~~F~~~~g~F~~~l~~d~~glL~LYeAs~l~~~gE~ 169 (554)
T 3g4d_A 96 ELENIYHN-N----ND-AENDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGED 169 (554)
T ss_dssp HHHHHHHS-C----CC-TTCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCHHHHHCHHHHHHHHHHHTTCCTTCH
T ss_pred HHHHHHhc-c----CC-CCCCHHHHHHHHHHHHhcCCCCChhHHhhhcccCCCcccccccchHHHHHHHHHHhCCCCCcH
Confidence 99999974 2 21 237999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHccCcccccchhhHHhhhhhcccCCCcCcHHHHHHHhhhhHHHhHhhHHH
Q 008620 176 ILDEALAFTTSHLESVAKQVCSPLAEQVKHALVQPIHKGLERLEARHYIPIYQGESSHNEALLTFAKLDFNGLQKLHQKE 255 (559)
Q Consensus 176 iLdea~~ft~~~L~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yI~~y~~~~~~n~~lLelAkldFn~~Q~~hq~E 255 (559)
|||||++||++||++.+++++++|+++|+|||++|||+++||||||+||++|++++++|++||||||||||+||++||+|
T Consensus 170 iLdeA~~fs~~~L~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~E 249 (554)
T 3g4d_A 170 ILDEAISFTTHHLSLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKIDFNMLQFLHRKE 249 (554)
T ss_dssp HHHHHHHHHHHHHHHHSTTCCTTHHHHHHHHHHCCTTTSCHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCchHHHHHHHHhCCCccCCchHHHHHHHHHHhCcCccccHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999988878888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCChhhHhhHHHHHHhhhccccCCCcchhHHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHhhh
Q 008620 256 LGDISRWWKELDFAHKLPFVRDRIAEVYFWAVGVHFEPQYSFARKLFTKVIYMTSIIDDIYDVYGKIEELDLFTSAIERW 335 (559)
Q Consensus 256 l~~lsrWwk~~~l~~~l~faRdr~ve~yf~~~~~~feP~~s~~Rl~~aK~~~l~~iiDD~yD~~gt~eEl~~ft~ai~rW 335 (559)
|++++|||+++||.++|||||||++|||||++|++|||+||.+|+++||+++|++++||+||+|||+|||++||+||+||
T Consensus 250 l~~l~rWwk~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~RW 329 (554)
T 3g4d_A 250 LSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERW 329 (554)
T ss_dssp HHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCcccCCchHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHhc
Confidence 99999999999998899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHhhhhhcc
Q 008620 336 DINAIDQLPEYMKLCYRALINVYSEVEKDLASQAKLYRLHYAKEAMKNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSG 415 (559)
Q Consensus 336 d~~~~~~lpeymk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g 415 (559)
|++++++||+|||+||.+|+++++|++.++.++||.++++|++++|+++++||++||+|+++||+||+||||+||++|+|
T Consensus 330 D~~~~~~LPeymK~~f~al~~~~~e~~~~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg 409 (554)
T 3g4d_A 330 DIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCG 409 (554)
T ss_dssp CGGGGGGSCGGGHHHHHHHHHHHHHHHHHHGGGTCTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGGSC
T ss_pred CccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhccceeeh
Confidence 99999999999999999999999999998889998899999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhcCCCCChhHHhhhcCchHHHHHHhHHhHhccCccchhhhhccCCCcchhHHHHhhcCCCHHHHHHHHHH
Q 008620 416 HPNLSAISFVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMASHKFEQSRGHVASSVECYINQYGATEEEAYSEFRK 495 (559)
Q Consensus 416 ~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~~G~~~n~V~cyM~e~g~S~eeA~~~i~~ 495 (559)
+++++++++++||+.+|+++++|++++|+|+++++.|+||+|||+||++|+++|+++|+|+|||+|+|+|+|||++++++
T Consensus 410 ~~~l~~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~van~V~cYMke~GvSeEeA~~~i~~ 489 (554)
T 3g4d_A 410 YAMLAITSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVFNK 489 (554)
T ss_dssp HHHHHHHHHHTSCTTSCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC------CCCHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHhccccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHhcCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhhhhccccccCCCCCCChh-HHHHHHhhhccccCC
Q 008620 496 QVSNAWKDINEECLRPTVVPVPLLIRILNLTRAADVIYKYKDGYTDSEE-LKDFIVSLLINPVPI 559 (559)
Q Consensus 496 ~i~~~wk~ln~e~l~~~~~p~~~~~~~ln~aR~~~~~Y~~~Dg~t~~~~-~k~~i~~ll~~pi~~ 559 (559)
+|+++||+||++|++++++|++|+++++|+||++++||+++||||.|+. ||++|++||++|||+
T Consensus 490 ~Ie~~wK~lN~e~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~l 554 (554)
T 3g4d_A 490 HVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGITSLLIEPIAL 554 (554)
T ss_dssp HHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHSCC-----CCCHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHhcCCCCC
Confidence 9999999999999998899999999999999999999999999999965 999999999999986
No 2
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=100.00 E-value=1.5e-167 Score=1367.21 Aligned_cols=536 Identities=47% Similarity=0.850 Sum_probs=507.3
Q ss_pred hcCCCccCCCCCCCCCCCCcCCccccCCCchhhHHHHHHHH-HHHHHHHHhhh-ccCcccchhHHHHHHHhCcccccHHH
Q 008620 15 NAGKDSTRGSANFPPSIWGDHFFQYTCDSQETDDQNVKHLE-LKKEIRRMLKA-VNKTSHTLELIDAIQRLGVSYHFESE 92 (559)
Q Consensus 15 ~~~~~~~r~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~~~~-lk~~v~~~~~~-~~~~~~~l~lID~lqrLGi~~hFe~E 92 (559)
+...++.||+||||||+|||+||++.+. ++..+.+.+|++ ||++||+||.+ ..+++++|+|||+||||||+|||++|
T Consensus 10 ~~~~~~~R~~~~~~ps~W~d~fl~~~~~-~~~~~~~~~~~e~Lk~eVr~~l~~~~~~~~~~L~lID~lqrLGi~~hF~~E 88 (550)
T 3m00_A 10 NYEEEIVRPVADFSPSLWGDQFLSFSIK-NQVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKE 88 (550)
T ss_dssp ------CCCCCCCCCCTTTTTTSCCCCC-HHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHTTCGGGCHHH
T ss_pred ccccccCCCCCCCCcccccccccccCCc-chhhHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHcCchhhhHHH
Confidence 3345568999999999999999997543 345677899999 99999999975 47899999999999999999999999
Q ss_pred HHHHHHHhHhcCCCCCCCCCCCCChhHHHHHHHHhhhcCccccccccccccccccccccccccChHHHHhHhhhcccCCC
Q 008620 93 IDEILGKMHKTYRDCDLCDNENDELYYISLQFRLFRQNGYRISADVFNTFEGSDGKFKASLAKDVRGMLSLYEATHLRVH 172 (559)
Q Consensus 93 I~~~L~~i~~~~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vS~dvf~~F~d~~g~F~~~l~~d~~glL~LYeAs~l~~~ 172 (559)
|+++|++||+. +. ...||++|||+|||||||||+||||||++|+|++|+|++++.+||+|||||||||||++|
T Consensus 89 I~~~L~~i~~~------~~-~~~dl~~~al~FRLLR~hGy~VS~dvf~~F~~~~G~F~~~l~~d~~glL~LYeAs~l~~~ 161 (550)
T 3m00_A 89 IDDILDQIYNQ------NS-NCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTH 161 (550)
T ss_dssp HHHHHHHHHHH------CC-CCSSHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSCBCGGGGGCHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHh------cc-cCCCHHHHHHHHHHHHhcCCCCChHHhhhccccCCCccccchhchHHHHHHHHHHhcCCC
Confidence 99999999986 31 247999999999999999999999999999999999999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHccCcccccchhhHHhhhhh-cccCCCcCcHHHHHHHhhhhHHHhHh
Q 008620 173 GENILDEALAFTTSHLESVAKQVCSPLAEQVKHALVQPIHKGLERLEARHYIP-IYQGESSHNEALLTFAKLDFNGLQKL 251 (559)
Q Consensus 173 gE~iLdea~~ft~~~L~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yI~-~y~~~~~~n~~lLelAkldFn~~Q~~ 251 (559)
||+|||||++||++||++.+++++++|+++|+|||++|||+++||||||+||+ +|++++++|++||||||||||+||++
T Consensus 162 gE~iLdeA~~fs~~~L~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~~Y~~~~~~n~~lLelAkldFn~~Q~~ 241 (550)
T 3m00_A 162 ADDILEDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQML 241 (550)
T ss_dssp TCGGGTTHHHHHHHHHHHHGGGCCTTHHHHHHHHHHSCSTTSCHHHHHHHHHHHTGGGCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHhCCCccCCchHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHh
Confidence 99999999999999999988877888999999999999999999999999999 99999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhCCCCCChhhHhhHHHHHHhhhccccCCCcchhHHHHHHHHHHhhhhhccccccCCHHHHHHHHHH
Q 008620 252 HQKELGDISRWWKELDFAHKLPFVRDRIAEVYFWAVGVHFEPQYSFARKLFTKVIYMTSIIDDIYDVYGKIEELDLFTSA 331 (559)
Q Consensus 252 hq~El~~lsrWwk~~~l~~~l~faRdr~ve~yf~~~~~~feP~~s~~Rl~~aK~~~l~~iiDD~yD~~gt~eEl~~ft~a 331 (559)
||+||++++|||+++||.++|||||||++|||||++|++|||+||.+|+++||+++|++++||+||+|||+|||++||+|
T Consensus 242 hq~EL~~l~rWwk~~~l~~~l~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~a 321 (550)
T 3m00_A 242 HKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWTLGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDA 321 (550)
T ss_dssp HHHHHHHHHHHHHTTTHHHHSTTSCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCccccCcHHHhHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHH
Confidence 99999999999999999889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhchhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHhhh
Q 008620 332 IERWDINAIDQLPEYMKLCYRALINVYSEVEKDLASQAKLYRLHYAKEAMKNQVKHYFFEAKWYHQNYIPTVDEYMTVAL 411 (559)
Q Consensus 332 i~rWd~~~~~~lpeymk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~ 411 (559)
|+|||++++++||+|||+||.+|+++++|+++++.++||.++++|++++|+++++||++||+|+++||+||+||||+||+
T Consensus 322 i~RWD~~~~~~LPeymK~~f~al~~~~~E~~~~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~ 401 (550)
T 3m00_A 322 IQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEIVRNYNVESTWFIEGYTPPVSEYLSNAL 401 (550)
T ss_dssp HHHCCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHT
T ss_pred HHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhcc
Confidence 99999999999999999999999999999999888999889999999999999999999999999999999999999999
Q ss_pred hhcchhhHHHHHHHhcCCCCChhHHhhhcCchHHHHHHhHHhHhccCccchhhhhccCCCcchhHHHHhhcCCCHHHHHH
Q 008620 412 ISSGHPNLSAISFVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMASHKFEQSRGHVASSVECYINQYGATEEEAYS 491 (559)
Q Consensus 412 ~S~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~~G~~~n~V~cyM~e~g~S~eeA~~ 491 (559)
+|+|++++++++++|+ +.+|+++++|+.++|+|++++++|+||+|||+||++|+++|+++|+|+|||+|+|+|+|+|++
T Consensus 402 vSsg~~~l~~~~f~g~-~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~vas~V~cYMke~GvSeEeA~~ 480 (550)
T 3m00_A 402 ATTTYYLLATTSYLGM-KSATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMA 480 (550)
T ss_dssp GGGSHHHHHHHHHHTC-TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHSHHHHHHTTCTTSHHHHHHHHHTCCHHHHHH
T ss_pred ccchHHHHHHHHHHcC-CCCcHHHHHhhcccHHHHHHHhhhheeeccchhHHHHHhcCCcccHHHHHHHhcCCCHHHHHH
Confidence 9999999999998876 679999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhhhhccccccC-CCCCCChh-HHHHHHhhhccccCC
Q 008620 492 EFRKQVSNAWKDINEECLRPTVVPVPLLIRILNLTRAADVIYKYK-DGYTDSEE-LKDFIVSLLINPVPI 559 (559)
Q Consensus 492 ~i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~ln~aR~~~~~Y~~~-Dg~t~~~~-~k~~i~~ll~~pi~~ 559 (559)
++++||+++||+||++|++++++|++|+++++|+||++++||+++ ||||.|+. ||++|++||++|||+
T Consensus 481 ~i~~~Ie~~wK~lN~e~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~~Dg~t~~~~~~k~~i~~ll~~Pi~~ 550 (550)
T 3m00_A 481 KFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIIEVTYIHNLDGYTHPEKVLKPHIINLLVDSIKI 550 (550)
T ss_dssp HHHHHHHHHHHHHHHHTSSSCSSCGGGTHHHHHHHHHHHHHTSCC-----CCHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHhhCCCCC
Confidence 999999999999999999988999999999999999999999998 99999975 999999999999986
No 3
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=100.00 E-value=3.2e-166 Score=1359.48 Aligned_cols=535 Identities=37% Similarity=0.637 Sum_probs=502.5
Q ss_pred ccCCCCCCCCCCCCcCCccccCCCchhhHHHHHHHH-HHHHHHHHhhhcc-CcccchhHHHHHHHhCcccccHHHHHHHH
Q 008620 20 STRGSANFPPSIWGDHFFQYTCDSQETDDQNVKHLE-LKKEIRRMLKAVN-KTSHTLELIDAIQRLGVSYHFESEIDEIL 97 (559)
Q Consensus 20 ~~r~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~~~~-lk~~v~~~~~~~~-~~~~~l~lID~lqrLGi~~hFe~EI~~~L 97 (559)
..||+||||||+|||+||++.+. ++..+.+.+|++ ||++||+||.+.. +++++|+|||+||||||+|||++||+++|
T Consensus 13 ~~~~~~~~~ps~W~~~fl~~~~~-~~~~~~~~~~~e~Lk~eVr~~l~~~~~~~~~~L~lID~lqRLGi~~hF~~EI~~~L 91 (555)
T 3n0f_A 13 EARRSADYEPNSWDYDFLLSSDT-DESIEVYKDKAKKLEAEVRREINNEKAEFLTLLELIDNVQRLGLGYRFESDIRRAL 91 (555)
T ss_dssp ----CCCCCCCTTCHHHHTCC------CHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHTTCGGGSHHHHHHHH
T ss_pred ccCCCCCCCcccccccccccCCc-chhhHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHcCchhhhHHHHHHHH
Confidence 36999999999999999997543 234677899999 9999999997666 89999999999999999999999999999
Q ss_pred HHhHhcCCCCCCCCCCCCChhHHHHHHHHhhhcCccccccccccccccccccccccccChHHHHhHhhhcccCCCCccHH
Q 008620 98 GKMHKTYRDCDLCDNENDELYYISLQFRLFRQNGYRISADVFNTFEGSDGKFKASLAKDVRGMLSLYEATHLRVHGENIL 177 (559)
Q Consensus 98 ~~i~~~~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vS~dvf~~F~d~~g~F~~~l~~d~~glL~LYeAs~l~~~gE~iL 177 (559)
++||+. .....+ ...||++|||+|||||||||+||||||++|+|++|+|++++.+||+|||||||||||++|||+||
T Consensus 92 ~~i~~~-~~~~~~--~~~DL~~~Al~FRLLR~hGy~VS~dvF~~F~d~~G~F~~~l~~dv~glL~LYeAs~l~~~gE~iL 168 (555)
T 3n0f_A 92 DRFVSS-GGFDGV--TKTSLHATALSFRLLRQHGFEVSQEAFSGFKDQNGNFLENLKEDTKAILSLYEASFLALEGENIL 168 (555)
T ss_dssp HHHHHT-CHHHHH--TTTCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSCBCGGGGGCHHHHHHHHHHHTTCCTTCHHH
T ss_pred HHHHhh-cccccc--ccCCHHHHHHHHHHHHhcCCCcChHHHhcccccCccchhhhhhhhHHHHHHHHHHhcccCCcHHH
Confidence 999973 100013 34799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh-hcCCcHHHHHHHHccCcccccchhhHHhhhhhcccCCCcCcHHHHHHHhhhhHHHhHhhHHHH
Q 008620 178 DEALAFTTSHLESVAK-QVCSPLAEQVKHALVQPIHKGLERLEARHYIPIYQGESSHNEALLTFAKLDFNGLQKLHQKEL 256 (559)
Q Consensus 178 dea~~ft~~~L~~~~~-~~~~~l~~~V~~aL~~P~~~~~~rlear~yI~~y~~~~~~n~~lLelAkldFn~~Q~~hq~El 256 (559)
|||++||++||++.+. .++++|+++|+|||++|||+++||||||+||++|++++++|++||||||||||+||++||+||
T Consensus 169 deA~~Fs~~~L~~~~~~~~~~~l~~~V~~aL~~P~~~~l~Rlear~yI~~Y~~~~~~n~~lLelAKlDFN~~Q~~hq~EL 248 (555)
T 3n0f_A 169 DEARVFAISHLKELSEEKIGKELAEQVNHALELPLHRRTQRLEAVWSIEAYRKKEDANQVLLELAILDYNMIQSVYQRDL 248 (555)
T ss_dssp HHHHHHHHHHHHTCCHHHHCHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCchHHHHHHHHhcCCcccCchHHHHHHHHHHhcccccccHHHHHHHHHhHHHHHHHhHHHH
Confidence 9999999999999765 567889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCChhhHhhHHHHHHhhhccccCCCcchhHHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHhhhc
Q 008620 257 GDISRWWKELDFAHKLPFVRDRIAEVYFWAVGVHFEPQYSFARKLFTKVIYMTSIIDDIYDVYGKIEELDLFTSAIERWD 336 (559)
Q Consensus 257 ~~lsrWwk~~~l~~~l~faRdr~ve~yf~~~~~~feP~~s~~Rl~~aK~~~l~~iiDD~yD~~gt~eEl~~ft~ai~rWd 336 (559)
++++|||+++||.++|||||||++|||||++|++|||+||.+|+++||+++|++++||+||+|||+|||++||+||+|||
T Consensus 249 ~~lsrWwk~~~l~~~l~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygt~eEl~~ft~ai~RWD 328 (555)
T 3n0f_A 249 RETSRWWRRVGLATKLHFARDRLIESFYWAVGVAFEPQYSDCRNSVAKMFSFVTIIDDIYDVYGTLDELELFTDAVERWD 328 (555)
T ss_dssp HHHHHHHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCcccCCchhhHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHhcC
Confidence 99999999999988999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHhhhhhcch
Q 008620 337 INAIDQLPEYMKLCYRALINVYSEVEKDLASQAKLYRLHYAKEAMKNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGH 416 (559)
Q Consensus 337 ~~~~~~lpeymk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~ 416 (559)
++++++||+|||+||.+|+++++|++.++.+++|.++++|++++|+++++||++||+|+++||+||+||||+||++|+|+
T Consensus 329 ~~~~~~LPeymk~~~~aL~~~~~e~~~~~~~~~g~~~~~~l~~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~ 408 (555)
T 3n0f_A 329 VNAINDLPDYMKLCFLALYNTINEIAYDNLKDKGENILPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSG 408 (555)
T ss_dssp GGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSH
T ss_pred ccccccCcHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHhcccchhH
Confidence 99999999999999999999999999887676667999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhcCCCCChhHHhhhcCchHHHHHHhHHhHhccCccchhhhhccCCCcchhHHHHhhcCCCHHHHHHHHHHH
Q 008620 417 PNLSAISFVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMASHKFEQSRGHVASSVECYINQYGATEEEAYSEFRKQ 496 (559)
Q Consensus 417 ~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~~G~~~n~V~cyM~e~g~S~eeA~~~i~~~ 496 (559)
++++++++++||+.+|+++++|++++|+|++++++|+||+|||+||++|+++|+++|+|+|||+|+|+|+|+|+++++++
T Consensus 409 ~~l~~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~vas~V~cYMke~GvSeEeA~~~i~~~ 488 (555)
T 3n0f_A 409 PLQLIFAYFAVVQNIKKEEIENLQKYHDIISRPSHIFRLCNDLASASAEIARGETANSVSCYMRTKGISEELATESVMNL 488 (555)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHhcccchHHHHHHHHHHHHhccchhhhhhhhcCCcchHHHHHHHHcCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHHhhhhccccccCCCCCCChh-HHHHHHhhhccccC
Q 008620 497 VSNAWKDINEECLRPTVVPVPLLIRILNLTRAADVIYKYKDGYTDSEE-LKDFIVSLLINPVP 558 (559)
Q Consensus 497 i~~~wk~ln~e~l~~~~~p~~~~~~~ln~aR~~~~~Y~~~Dg~t~~~~-~k~~i~~ll~~pi~ 558 (559)
|+++||+||++|++++++|++|+++++|+||++++||+++||||.|+. ||++|++||++|||
T Consensus 489 Ie~~wK~lN~e~l~~~~~p~~~~~~~~n~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~ 551 (555)
T 3n0f_A 489 IDETWKKMNKEKLGGSLFAKPFVETAINLARQSHCTYHNGDAHTSPDELTRKRVLSVITEPIL 551 (555)
T ss_dssp HHHHHHHHHHHHHSCCSSCHHHHHHHHHHHHHHHHHSCCC---CCHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHhcCCC
Confidence 999999999999998899999999999999999999999999999975 99999999999997
No 4
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=100.00 E-value=1.4e-160 Score=1321.59 Aligned_cols=536 Identities=34% Similarity=0.580 Sum_probs=510.1
Q ss_pred CCCCCCCCCCCCcCCccccCCCchhhHHHHHHHH-HHHHHHHHhhhccCcccchhHHHHHHHhCcccccHHHHHHHHHHh
Q 008620 22 RGSANFPPSIWGDHFFQYTCDSQETDDQNVKHLE-LKKEIRRMLKAVNKTSHTLELIDAIQRLGVSYHFESEIDEILGKM 100 (559)
Q Consensus 22 r~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~~~~-lk~~v~~~~~~~~~~~~~l~lID~lqrLGi~~hFe~EI~~~L~~i 100 (559)
||++|||||+|||+||++.+. ++..+.+.++++ ||++||+|+.++.|++++|+|||+||||||+|||++||+++|++|
T Consensus 2 r~~~~~~ps~W~~~fl~~~~~-~~~~~~~~~~~~~Lk~~V~~~~~~~~d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i 80 (543)
T 2ong_A 2 RRSGNYNPSRWDVNFIQSLLS-DYKEDKHVIRASELVTLVKMELEKETDQIRQLELIDDLQRMGLSDHFQNEFKEILSSI 80 (543)
T ss_dssp CCCCCCCCCSSCHHHHHHCCC-SSCSTHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTGGGTTHHHHHHHHHHH
T ss_pred CCCCCCCCCcCCcccccCCCc-hhhhhHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCchhhhHHHHHHHHHHH
Confidence 899999999999999986433 344557899999 999999999877789999999999999999999999999999999
Q ss_pred HhcCCCCCCCCCC-CCChhHHHHHHHHhhhcCccccccccccccccccccccccccChHHHHhHhhhcccCCCCccHHHH
Q 008620 101 HKTYRDCDLCDNE-NDELYYISLQFRLFRQNGYRISADVFNTFEGSDGKFKASLAKDVRGMLSLYEATHLRVHGENILDE 179 (559)
Q Consensus 101 ~~~~~~~~~~~~~-~~dl~~~al~FRlLR~~Gy~vS~dvf~~F~d~~g~F~~~l~~d~~glL~LYeAs~l~~~gE~iLde 179 (559)
|+.....+.|-.. ..||++|||+|||||||||+||||||++|||++|+|++++.+||+|||||||||||++|||+||||
T Consensus 81 ~~~~~~~~~~~~~~~~dl~~~al~FRlLR~hGy~vs~dvf~~Fk~~~g~F~~~l~~d~~glL~Ly~As~l~~~gE~iL~e 160 (543)
T 2ong_A 81 YLDHHYYKNPFPKEERDLYSTSLAFRLLREHGFQVAQEVFDSFKNEEGEFKESLSDDTRGLLQLYEASFLLTEGETTLES 160 (543)
T ss_dssp HHTTTCCCSSCCCCCCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCTTGGGCHHHHHHHHHHHTTCCSSCHHHHH
T ss_pred HHhhcccccccccccCCHHHHHHHHHHHHHcCCCccHHHHhcccCCCCCccchhhhccHHHHHHHHHHHcCCCChHHHHH
Confidence 9851101111001 469999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh-c-CCcHHHHHHHHccCcccccchhhHHhhhhhcccCCCcCcHHHHHHHhhhhHHHhHhhHHHHH
Q 008620 180 ALAFTTSHLESVAKQ-V-CSPLAEQVKHALVQPIHKGLERLEARHYIPIYQGESSHNEALLTFAKLDFNGLQKLHQKELG 257 (559)
Q Consensus 180 a~~ft~~~L~~~~~~-~-~~~l~~~V~~aL~~P~~~~~~rlear~yI~~y~~~~~~n~~lLelAkldFn~~Q~~hq~El~ 257 (559)
|++||++||++++.+ + +++|+++|+|||++|||+++||||||+||++|++++++|++||||||||||+||++||+||+
T Consensus 161 A~~Ft~~~L~~~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~El~ 240 (543)
T 2ong_A 161 AREFATKFLEEKVNEGGVDGDLLTRIAYSLDIPLHWRIKRPNAPVWIEWYRKRPDMNPVVLELAILDLNIVQAQFQEELK 240 (543)
T ss_dssp HHHHHHHHHHHHHHSSCSSSHHHHHHHHHHHSCTTTSCSTTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCcHHHHHHHHHhhhHhccchHHHHHHHHHHhccCccccHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999886 5 78899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCChhhHhhHHHHHHhhhccccCCCcchhHHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHhhhch
Q 008620 258 DISRWWKELDFAHKLPFVRDRIAEVYFWAVGVHFEPQYSFARKLFTKVIYMTSIIDDIYDVYGKIEELDLFTSAIERWDI 337 (559)
Q Consensus 258 ~lsrWwk~~~l~~~l~faRdr~ve~yf~~~~~~feP~~s~~Rl~~aK~~~l~~iiDD~yD~~gt~eEl~~ft~ai~rWd~ 337 (559)
+++|||+++||.+++||||||+++||||++|++|||++|.+|+++||+++|+|++||+||+|||++|++.||+||+|||+
T Consensus 241 ~l~rWwk~~~l~~kl~faRdR~ve~Yfw~~a~~feP~~s~~Rl~~aK~~~litviDD~fD~~gt~eEl~~ft~ai~rWD~ 320 (543)
T 2ong_A 241 ESFRWWRNTGFVEKLPFARDRLVECYFWNTGIIEPRQHASARIMMGKVNALITVIDDIYDVYGTLEELEQFTDLIRRWDI 320 (543)
T ss_dssp HHHHHHHHHTHHHHSCSSCCCHHHHHHTHHHHTCSTTCHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCcccccHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCc
Confidence 99999999999878999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHhhhhhcchh
Q 008620 338 NAIDQLPEYMKLCYRALINVYSEVEKDLASQAKLYRLHYAKEAMKNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHP 417 (559)
Q Consensus 338 ~~~~~lpeymk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~ 417 (559)
++++.+|+|||+||.+++++++|++.++.+.+++++++|++++|++++++|++||+|+++||+||+||||++|.+|+|++
T Consensus 321 ~~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~ 400 (543)
T 2ong_A 321 NSIDQLPDYMQLCFLALNNFVDDTSYDVMKEKGVNVIPYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSISGP 400 (543)
T ss_dssp STTTTSCSHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHH
T ss_pred cccccCCchhHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHH
Confidence 99999999999999999999999999887777779999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhcCCCCChhHHhhhcCchHHHHHHhHHhHhccCccchhhhhccCCCcchhHHHHhhcCCCHHHHHHHHHHHH
Q 008620 418 NLSAISFVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMASHKFEQSRGHVASSVECYINQYGATEEEAYSEFRKQV 497 (559)
Q Consensus 418 ~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~~G~~~n~V~cyM~e~g~S~eeA~~~i~~~i 497 (559)
+++++++++||..+|+++++|+.++|+++++++.|+||+|||+||++|+++|+++|+|+|||+|+|+|+|+|+++++++|
T Consensus 401 ~l~~~~~~~~g~~~t~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~~~n~V~cyMke~g~s~eeA~~~i~~~i 480 (543)
T 2ong_A 401 CMLTHIFFRVTDSFTKETVDSLYKYHDLVRWSSFVLRLADDLGTSVEEVSRGDVPKSLQCYMSDYNASEAEARKHVKWLI 480 (543)
T ss_dssp HHHHHHHHHHSSCCCHHHHHHHTTTCHHHHHHHHHHHHHHHHHSSHHHHHTSCCCCHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHhcccHHHHHHHHHHHHHhcccchhhhccccCCccHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh-cCCCCCCHHHHHHHHHHhhhhccccccCCCCCCChh-HHHHHHhhhccccC
Q 008620 498 SNAWKDINEEC-LRPTVVPVPLLIRILNLTRAADVIYKYKDGYTDSEE-LKDFIVSLLINPVP 558 (559)
Q Consensus 498 ~~~wk~ln~e~-l~~~~~p~~~~~~~ln~aR~~~~~Y~~~Dg~t~~~~-~k~~i~~ll~~pi~ 558 (559)
+++||+||+++ ++++++|++|+++++|++|+++++|+++||||.|+. ||++|++||++|||
T Consensus 481 e~~wk~ln~e~~l~~~~vp~~~~~~~~n~aR~~~~~Y~~~D~~t~~~~~~k~~i~~l~~~pi~ 543 (543)
T 2ong_A 481 AEVWKKMNAERVSKDSPFGKDFIGCAVDLGRMAQLMYHNGDGHGTQHPIIHQQMTRTLFEPFA 543 (543)
T ss_dssp HHHHHHHHHHHTCSSCSSCHHHHHHHHHHHHHHHHHTSSCSTTSSSCTTHHHHHHHHHTSCC-
T ss_pred HHHHHHHHHHhccCCCCCCHHHHHHHHHHHHeehhheeCCCCCCCccHHHHHHHHHHhccCCC
Confidence 99999999999 998899999999999999999999999999999965 99999999999997
No 5
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=100.00 E-value=1.9e-160 Score=1320.02 Aligned_cols=538 Identities=36% Similarity=0.660 Sum_probs=487.3
Q ss_pred ccCCCCCCCCCCCCcCCccccCCCchhhHHHHHHHH-HHHHHHHHhhhccCcccchhHHHHHHHhCcccccHHHHHHHHH
Q 008620 20 STRGSANFPPSIWGDHFFQYTCDSQETDDQNVKHLE-LKKEIRRMLKAVNKTSHTLELIDAIQRLGVSYHFESEIDEILG 98 (559)
Q Consensus 20 ~~r~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~~~~-lk~~v~~~~~~~~~~~~~l~lID~lqrLGi~~hFe~EI~~~L~ 98 (559)
+.||++|||||+|||+||+ ++.+++..+.+.++++ ||++||+|+.++.|++++|+|||+||||||+|||++||+++|+
T Consensus 4 ~~r~~~~~~ps~W~~~fl~-s~~~~~~~~~~~~~~~~Lk~~V~~~~~~~~d~~~~l~lvD~lqrLGi~~hF~~EI~~~L~ 82 (549)
T 1n1b_A 4 QIRRSGNYQPALWDSNYIQ-SLNTPYTEERHLDRKAELIVQVRILLKEKMEPVQQLELIHDLKYLGLSDFFQDEIKEILG 82 (549)
T ss_dssp -----------CCCHHHHH-HCCCSTTSHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCGGGGHHHHHHHHH
T ss_pred cCCCCCCCCCCCCCCCccc-CCCcchhhhHHHHHHHHHHHHHHHHHhcccCHHHHHHhHHHHHhCCchhhhHHHHHHHHH
Confidence 4699999999999999995 4444444567899999 9999999998777899999999999999999999999999999
Q ss_pred HhHhcCCCCCCCCCCCCChhHHHHHHHHhhhcCcccccccccccccccc-ccccccccChHHHHhHhhhcccCCCCccHH
Q 008620 99 KMHKTYRDCDLCDNENDELYYISLQFRLFRQNGYRISADVFNTFEGSDG-KFKASLAKDVRGMLSLYEATHLRVHGENIL 177 (559)
Q Consensus 99 ~i~~~~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vS~dvf~~F~d~~g-~F~~~l~~d~~glL~LYeAs~l~~~gE~iL 177 (559)
+||+.............|||+|||+|||||||||+||||||++|||++| +|++++.+||+|||||||||||++|||+||
T Consensus 83 ~i~~~~~~~~~~~~~~~dl~~~al~FRlLR~hGy~Vs~dvf~~Fk~~~g~~F~~~l~~d~~glL~LY~As~l~~~gE~iL 162 (549)
T 1n1b_A 83 VIYNEHKCFHNNEVEKMDLYFTALGFRLLRQHGFNISQDVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLLRKGEDTL 162 (549)
T ss_dssp HHHHHCHHHHHCCCCSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSSBCGGGGGCHHHHHHHHHHHTTCCTTCHHH
T ss_pred HHHhhhccccccccccCChhhchhhhhHHHhcCCCcCHHHHhhccCCCCCccchhhhhccHHHHHHHHHHhcCCCChHHH
Confidence 9997510000000013699999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhh---c-CCcHHHHHHHHccCcccccchhhHHhhhhhcccCCCcCcHHHHHHHhhhhHHHhHhhH
Q 008620 178 DEALAFTTSHLESVAKQ---V-CSPLAEQVKHALVQPIHKGLERLEARHYIPIYQGESSHNEALLTFAKLDFNGLQKLHQ 253 (559)
Q Consensus 178 dea~~ft~~~L~~~~~~---~-~~~l~~~V~~aL~~P~~~~~~rlear~yI~~y~~~~~~n~~lLelAkldFn~~Q~~hq 253 (559)
|||++||++||++.+.+ + +++|+++|+|||++|||+++||||||+||++|++++++|++||||||||||+||++||
T Consensus 163 ~eA~~Ft~~~L~~~~~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq 242 (549)
T 1n1b_A 163 ELAREFATKCLQKKLDEGGNEIDENLLLWIRHSLDLPLHWRIQSVEARWFIDAYARRPDMNPLIFELAKLNFNIIQATHQ 242 (549)
T ss_dssp HHHHHHHHHHHHHHTC------CHHHHHHHHHHHHSCGGGCCTTTSHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHhcCchhcCchHHHHHHHHHHhcccccccHHHHHHHHHhHHHHHHHHH
Confidence 99999999999998875 5 7789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHhhHHHHHHhhhccccCCCcchhHHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHh
Q 008620 254 KELGDISRWWKELDFAHKLPFVRDRIAEVYFWAVGVHFEPQYSFARKLFTKVIYMTSIIDDIYDVYGKIEELDLFTSAIE 333 (559)
Q Consensus 254 ~El~~lsrWwk~~~l~~~l~faRdr~ve~yf~~~~~~feP~~s~~Rl~~aK~~~l~~iiDD~yD~~gt~eEl~~ft~ai~ 333 (559)
+||++++|||+++||.+++||||||+++||||++|++|||++|.+|+++||+++|+|++||+||+|||++|++.||+||+
T Consensus 243 ~El~~l~rWwke~~l~~kl~faRdR~ve~Yfw~~a~~feP~~s~~Rl~~aK~~~l~tviDD~yD~~gt~eEl~~ft~ai~ 322 (549)
T 1n1b_A 243 QELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPHQHGYQRKMAATIIVLATVIDDIYDVYGTLDELELFTDTFK 322 (549)
T ss_dssp HHHHHHHHHHHHHTHHHHCTTSCCCHHHHHHHHHHHCCSTTCHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 99999999999999987799999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHhhhhh
Q 008620 334 RWDINAIDQLPEYMKLCYRALINVYSEVEKDLASQAKLYRLHYAKEAMKNQVKHYFFEAKWYHQNYIPTVDEYMTVALIS 413 (559)
Q Consensus 334 rWd~~~~~~lpeymk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S 413 (559)
|||+++++++|+|||+||.+++++++|++.++.+.+++++++|++++|++++++|++||+|+++||+||+||||++|.+|
T Consensus 323 rWD~~~~~~lPeymk~~~~aL~d~~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS 402 (549)
T 1n1b_A 323 RWDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKIS 402 (549)
T ss_dssp HTCSSGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred hcCccccccCccHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhcccc
Confidence 99999999999999999999999999999988777777999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHhcCCCCChhH-HhhhcCchHHHHHHhHHhHhccCccchhhhhccCCCcchhHHHHhhcCCCHHHHHHH
Q 008620 414 SGHPNLSAISFVGMGDIVTKES-FEWLFSNPRSIRASCAVGRLMNDMASHKFEQSRGHVASSVECYINQYGATEEEAYSE 492 (559)
Q Consensus 414 ~g~~~~~~~~~~~~g~~l~~ev-~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~~G~~~n~V~cyM~e~g~S~eeA~~~ 492 (559)
+|+++++++++++||..+|+++ ++|+.++|+++++++.|+||+|||+||++|+++|+++|+|+|||+|+|+|+|||+++
T Consensus 403 ~g~~~l~~~~~~~~g~~lt~e~~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~v~n~V~cyMke~g~s~eeA~~~ 482 (549)
T 1n1b_A 403 VASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQCYMKETNASEEEAVEH 482 (549)
T ss_dssp TCHHHHHHHHHTTSTTCCCCHHHHHHHHTTCHHHHHHHHHHHHHHHHC---------CCCCHHHHHHHHHCCCHHHHHHH
T ss_pred hhHHHHHHHHHHHcCCCCcHHHHHhhhcccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHHcCCCHHHHHHH
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhhhhccccccCCCCCCChh-HHHHHHhhhccccC
Q 008620 493 FRKQVSNAWKDINEECLRPTVVPVPLLIRILNLTRAADVIYKYKDGYTDSEE-LKDFIVSLLINPVP 558 (559)
Q Consensus 493 i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~ln~aR~~~~~Y~~~Dg~t~~~~-~k~~i~~ll~~pi~ 558 (559)
++++|+++||++|++|++++++|++|+++++|++|++++||+++||||.|+. ||++|++||++|||
T Consensus 483 i~~~i~~~wk~ln~e~l~~~~vp~~~~~~~~n~~R~~~~~Y~~~Dg~t~~~~~~k~~i~~l~~~pi~ 549 (549)
T 1n1b_A 483 VKFLIREAWKDMNTAIAAGYPFPDGMVAGAANIGRVAQFIYLHGDGFGVQHSKTYEHIAGLLFEPYA 549 (549)
T ss_dssp HHHHHHHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHHTTTSCCC----CHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHeeehheeCCCCCCCCcHHHHHHHHHHhcCCCC
Confidence 9999999999999999998899999999999999999999999999999975 99999999999997
No 6
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=100.00 E-value=5e-160 Score=1320.47 Aligned_cols=535 Identities=35% Similarity=0.601 Sum_probs=466.4
Q ss_pred cCCCccCCCCCCCCCCCCcCCccccCCCchhhHHHHHHHH-HHHHHHHHhhhccCcccchhHHHHHHHhCcccccHHHHH
Q 008620 16 AGKDSTRGSANFPPSIWGDHFFQYTCDSQETDDQNVKHLE-LKKEIRRMLKAVNKTSHTLELIDAIQRLGVSYHFESEID 94 (559)
Q Consensus 16 ~~~~~~r~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~~~~-lk~~v~~~~~~~~~~~~~l~lID~lqrLGi~~hFe~EI~ 94 (559)
+..+..||++|||||+|||+||++.+ +.+..+.+.++++ ||++||+|+.++.|++++|+|||+||||||+|||++||+
T Consensus 29 ~~~~~~r~~~~~~ps~W~~~fl~~~~-~~~~~~~~~~~~~~Lk~~Vr~~~~~~~d~~~~l~lID~lqrLGi~~hFe~EI~ 107 (569)
T 2j5c_A 29 DDKDRWIRTGGYQPTLWDFSTIQSFD-SEYKEEKHLMRAAGMIDQVKMMLQEEVDSIRRLELIDDLRRLGISCHFEREIV 107 (569)
T ss_dssp ----------------------------------CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCGGGGHHHHH
T ss_pred CcccccCCCCCCCCCcCCcccccCCC-chhhhHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhCCchhhhHHHHH
Confidence 33556899999999999999998643 2344557889999 999999999877789999999999999999999999999
Q ss_pred HHHHHhH-hcCCCCCCCCCCCCChhHHHHHHHHhhhcCcccccccccccccccc-ccccccccChHHHHhHhhhcccCCC
Q 008620 95 EILGKMH-KTYRDCDLCDNENDELYYISLQFRLFRQNGYRISADVFNTFEGSDG-KFKASLAKDVRGMLSLYEATHLRVH 172 (559)
Q Consensus 95 ~~L~~i~-~~~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vS~dvf~~F~d~~g-~F~~~l~~d~~glL~LYeAs~l~~~ 172 (559)
++|++|| +. . .. ...||++|||+|||||||||+||||||++|||++| +|++++.+||+|||||||||||++|
T Consensus 108 ~~L~~i~~~~-~----~~-~~~Dl~~~al~FRlLR~hGy~Vs~dvF~~Fkd~~G~~F~~~l~~dv~glL~LY~As~l~~~ 181 (569)
T 2j5c_A 108 EILNSKYYTN-N----EI-DERDLYSTALRFRLLRQYDFSVSQEVFDCFKNAKGTDFKPSLVDDTRGLLQLYEASFLSAQ 181 (569)
T ss_dssp HHHHHHTTSS-C----CS-CTTCHHHHHHHHHHHHHTTCCCCGGGGGGGBCSSSSSBCGGGGGCHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHhc-c----Cc-ccCChhhhhHHhHHHHhcCCCcCHHHHhcccCCCCCccccchhhccHHHHHHHHHHhcCCC
Confidence 9999999 75 1 10 23699999999999999999999999999999999 9999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHHHHHHhhc-CCcHHHHHHHHccCcccccchhhHHhhhhhcccCCCcCcHHHHHHHhhhhHHHhHh
Q 008620 173 GENILDEALAFTTSHLESVAKQV-CSPLAEQVKHALVQPIHKGLERLEARHYIPIYQGESSHNEALLTFAKLDFNGLQKL 251 (559)
Q Consensus 173 gE~iLdea~~ft~~~L~~~~~~~-~~~l~~~V~~aL~~P~~~~~~rlear~yI~~y~~~~~~n~~lLelAkldFn~~Q~~ 251 (559)
||+|||||++||++||++++.++ +++|+++|+|||++|||+++||||||+||++|++++++|++||||||||||+||++
T Consensus 182 gE~iLdeA~~Ft~~~L~~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~ 261 (569)
T 2j5c_A 182 GEETLRLARDFATKFLQKRVLVDKDINLLSSIERALELPTHWRVQMPNARSFIDAYKRRPDMNPTVLELAKLDFNMVQAQ 261 (569)
T ss_dssp TCHHHHHHHHHHHHTTSSCC----CHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHhcCccccCcHHHHHHHHHHHhccCccccHHHHHHHHHhHHHHHHH
Confidence 99999999999999999988766 78899999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhCCCCCChhhHhhHHHHHHhhhccccCCCcchhHHHHHHHHHHhhhhhccccccCCHHHHHHHHHH
Q 008620 252 HQKELGDISRWWKELDFAHKLPFVRDRIAEVYFWAVGVHFEPQYSFARKLFTKVIYMTSIIDDIYDVYGKIEELDLFTSA 331 (559)
Q Consensus 252 hq~El~~lsrWwk~~~l~~~l~faRdr~ve~yf~~~~~~feP~~s~~Rl~~aK~~~l~~iiDD~yD~~gt~eEl~~ft~a 331 (559)
||+||++++|||+++||.+++||||||++|||||++|++|||++|.+|+++||+++|+|++||+||+|||++|++.||+|
T Consensus 262 hq~EL~~l~rWwke~~L~~kl~faRdR~ve~Yfw~~a~~feP~~S~~Rl~~aK~~~litviDD~fD~ygT~eEl~~ft~a 341 (569)
T 2j5c_A 262 FQQELKEASRWWNSTGLVHELPFVRDRIVECYYWTTGVVERRQHGYERIMLTKINALVTTIDDVFDIYGTLEELQLFTTA 341 (569)
T ss_dssp HHHHHHHHHHHHHHHTHHHHCC--CCCHHHHHHHHHHHCCCGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 99999999999999999878999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhchhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHhhh
Q 008620 332 IERWDINAIDQLPEYMKLCYRALINVYSEVEKDLASQAKLYRLHYAKEAMKNQVKHYFFEAKWYHQNYIPTVDEYMTVAL 411 (559)
Q Consensus 332 i~rWd~~~~~~lpeymk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~ 411 (559)
|+|||+++++++|+|||+||.+|+++++|++.++.+.+++++++|++++|++++++|++||+|+++||+||+||||++|.
T Consensus 342 i~rWD~~~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~ 421 (569)
T 2j5c_A 342 IQRWDIESMKQLPPYMQICYLALFNFVNEMAYDTLRDKGFDSTPYLRKVWVGLIESYLIEAKWYYKGHKPSLEEYMKNSW 421 (569)
T ss_dssp HHHTSSGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHcCccccccCCchhHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhccc
Confidence 99999999999999999999999999999999887777779999999999999999999999999999999999999999
Q ss_pred hhcchhhHHHHHHHhcCCCCChhHHhhhcCchHHHHHHhHHhHhccCccchhhhhccCCCcchhHHHHhhcCCCHHHHHH
Q 008620 412 ISSGHPNLSAISFVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMASHKFEQSRGHVASSVECYINQYGATEEEAYS 491 (559)
Q Consensus 412 ~S~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~~G~~~n~V~cyM~e~g~S~eeA~~ 491 (559)
+|+|+++++++++++||..+|+++++|+.++|+++++++.|+||+|||+||++|+++|+++|+|+|||+|+|+|+|+|++
T Consensus 422 vSsg~~~l~~~~~~~~g~~lt~e~~e~l~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~v~s~V~cyMke~g~s~eeA~~ 501 (569)
T 2j5c_A 422 ISIGGIPILSHLFFRLTDSIEEEAAESMHKYHDIVRASCTILRLADDMGTSLDEVERGDVPKSVQCYMNEKNASEEEARE 501 (569)
T ss_dssp HHTSCHHHHHHHHHHSCSSCCHHHHHHHTTTCHHHHHHHHHHHHHHHHHC----------CCHHHHC------CCHHHHH
T ss_pred ccchHHHHHHHHHHHcCCCCCHHHHHHhhccHHHHHHHHHHHHHhcccchhhhhcccCCccHHHHHHHHHcCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhhhhccccccC-CCCCCChh-HHHHHHhhhccccC
Q 008620 492 EFRKQVSNAWKDINEECLRPTVVPVPLLIRILNLTRAADVIYKYK-DGYTDSEE-LKDFIVSLLINPVP 558 (559)
Q Consensus 492 ~i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~ln~aR~~~~~Y~~~-Dg~t~~~~-~k~~i~~ll~~pi~ 558 (559)
+++++|+++||+||++|++ +++|++|+++++|++|+++++|+++ ||||.|+. ||++|++||++|||
T Consensus 502 ~i~~~ie~~wk~ln~e~l~-~~vp~~~~~~~~nlaR~~~~~Y~~~~Dg~t~~~~~~k~~i~~ll~~pi~ 569 (569)
T 2j5c_A 502 HVRSLIDQTWKMMNKEMMT-SSFSKYFVEVSANLARMAQWIYQHESDGFGMQHSLVNKMLRDLLFHRYE 569 (569)
T ss_dssp HHHHHHHHHHHHHHHHHHH-CCSCHHHHHHHHHHHHHHHHHTGGGSCTTC-CCCHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHheeehhccCCCcCCCCchHHHHHHHHHHhccCCC
Confidence 9999999999999999999 8899999999999999999999999 99999965 99999999999997
No 7
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=100.00 E-value=1.1e-143 Score=1226.46 Aligned_cols=506 Identities=34% Similarity=0.576 Sum_probs=466.2
Q ss_pred HHHH-HHHHHHHHhhh-----ccCcccchhHHHHHHHhCcccccHHHHHHHHHHhHhc-CCCCCCCCC-C--CCChhHHH
Q 008620 52 KHLE-LKKEIRRMLKA-----VNKTSHTLELIDAIQRLGVSYHFESEIDEILGKMHKT-YRDCDLCDN-E--NDELYYIS 121 (559)
Q Consensus 52 ~~~~-lk~~v~~~~~~-----~~~~~~~l~lID~lqrLGi~~hFe~EI~~~L~~i~~~-~~~~~~~~~-~--~~dl~~~a 121 (559)
+-.+ |...|++.-++ +.+++++|++||+||||||+|||++||+++|++||+. .+.+..+ + . ..||++||
T Consensus 274 ~~~~YL~~~~~~~~g~VP~~yP~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~-~~~~~~~Dl~~tA 352 (817)
T 3sdr_A 274 KCLEFLNSVMIKFGNFVPCLYPVDLLERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGW-GRLNPIADLETTA 352 (817)
T ss_dssp HHHHHHHHHHHHHSSCCCSSSCCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCCTTCCCS-STTCSSCCHHHHH
T ss_pred hHHHHHHHHHHhcCCCCCccCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhccccc-ccCCCCCCHHHHH
Confidence 3345 99999997654 3789999999999999999999999999999999985 1111111 1 1 36999999
Q ss_pred HHHHHhhhcCcccccccccccccccccccccc---ccChHHHHhHhhhcccCCCCccHHHHHHHHHHHHHHHHHhh----
Q 008620 122 LQFRLFRQNGYRISADVFNTFEGSDGKFKASL---AKDVRGMLSLYEATHLRVHGENILDEALAFTTSHLESVAKQ---- 194 (559)
Q Consensus 122 l~FRlLR~~Gy~vS~dvf~~F~d~~g~F~~~l---~~d~~glL~LYeAs~l~~~gE~iLdea~~ft~~~L~~~~~~---- 194 (559)
|+|||||||||+||||||++|+|++|+|++++ .+|++|||||||||||++|||+|||||++||++||++.+..
T Consensus 353 l~FRlLR~~Gy~VS~dvf~~F~d~~g~F~~~~~~~~~dv~gmL~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~ 432 (817)
T 3sdr_A 353 LGFRLLRLHRYNVSPAIFDNFKDANGKFICSTGQFNKDVASMLNLYRASQLAFPGENILDEAKSFATKYLREALEKSETS 432 (817)
T ss_dssp HHHHHHHHTTCCCCGGGGGGGBCC--CBCCCSSCHHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHTSGGGG
T ss_pred HHHHHHHHcCCCccHhHHHHHhhcCCCceechhhhchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999976 69999999999999999999999999999999999998752
Q ss_pred ----cCCcHHHHHHHHccCcccccchhhHHhhhhhcccCCCc------------CcHHHHHHHhhhhHHHhHhhHHHHHH
Q 008620 195 ----VCSPLAEQVKHALVQPIHKGLERLEARHYIPIYQGESS------------HNEALLTFAKLDFNGLQKLHQKELGD 258 (559)
Q Consensus 195 ----~~~~l~~~V~~aL~~P~~~~~~rlear~yI~~y~~~~~------------~n~~lLelAkldFn~~Q~~hq~El~~ 258 (559)
+.++|++||+|||++|||+++||||||+||++|++++. +|++||||||||||+||++||+||++
T Consensus 433 ~~~~~~~~L~~eV~~aL~~P~~~~l~Rlear~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~ 512 (817)
T 3sdr_A 433 SAWNNKQNLSQEIKYALKTSWHASVPRVEAKRYCQVYRPDYARIAKCVYKLPYVNNEKFLELGKLDFNIIQSIHQEEMKN 512 (817)
T ss_dssp SHHHHHTTHHHHHHHHHHCCSTTCCHHHHHHHHHTTCCTTCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCcHHHHHHHHhcCchhccChHHHHHHHHHHhCccchhhhhhcccccccccHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 24779999999999999999999999999999998875 49999999999999999999999999
Q ss_pred HHHHHHHhCCCCCChhhHhhHHHHHHhhhccccCCCcchhHHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHhhhchh
Q 008620 259 ISRWWKELDFAHKLPFVRDRIAEVYFWAVGVHFEPQYSFARKLFTKVIYMTSIIDDIYDVYGKIEELDLFTSAIERWDIN 338 (559)
Q Consensus 259 lsrWwk~~~l~~~l~faRdr~ve~yf~~~~~~feP~~s~~Rl~~aK~~~l~~iiDD~yD~~gt~eEl~~ft~ai~rWd~~ 338 (559)
++||||++|+ .++||||||++|||||++|++|||+||.+|+++||+++|++++||+||+|||+||+++||+||+|||++
T Consensus 513 lsrWwk~~~l-~~l~faRdr~ve~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~ 591 (817)
T 3sdr_A 513 VTSWFRDSGL-PLFTFARERPLEFYFLVAAGTYEPQYAKCRFLFTKVACLQTVLDDMYDTYGTLDELKLFTEAVRRWDLS 591 (817)
T ss_dssp HHHHHHHSSG-GGCTTSCCCHHHHHHHHHTTSCCGGGHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTCGG
T ss_pred hceeHHhcCC-CcCccHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHcCch
Confidence 9999999999 599999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCChhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHhhhhhcchhh
Q 008620 339 AIDQLPEYMKLCYRALINVYSEVEKDLASQAKLYRLHYAKEAMKNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPN 418 (559)
Q Consensus 339 ~~~~lpeymk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~~ 418 (559)
++++||+|||+||.+|+++++|++.++.+++|.++++|++++|++++++|++||+|+++||+||+||||+||++|+|+++
T Consensus 592 ~~~~LPeymk~~~~aL~~~~~e~~~~~~~~~g~~~~~~l~~aw~~l~~ayl~EAkW~~~gyvPt~eEYl~na~vS~g~~~ 671 (817)
T 3sdr_A 592 FTENLPDYMKLCYQIYYDIVHEVAWEAEKEQGRELVSFFRKGWEDYLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQRI 671 (817)
T ss_dssp GGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHH
T ss_pred hhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccccccH
Confidence 99999999999999999999999988766655599999999999999999999999999999999999999999999999
Q ss_pred -HHHHHHHhcCCCCChhHHhhhc--CchHHHHHHhHHhHhccCccchhhhhccCCCcchhHHHHhhc-CCCHHHHHHHHH
Q 008620 419 -LSAISFVGMGDIVTKESFEWLF--SNPRSIRASCAVGRLMNDMASHKFEQSRGHVASSVECYINQY-GATEEEAYSEFR 494 (559)
Q Consensus 419 -~~~~~~~~~g~~l~~ev~e~~~--~~~~l~~~~~~i~RL~NDI~S~~kE~~~G~~~n~V~cyM~e~-g~S~eeA~~~i~ 494 (559)
++.++++++|+.+|+|+++|+. ++|+|+++++.|+||+|||+||++|+++|+++|+|+|||+|+ |+|+|+|+++++
T Consensus 672 ll~~~~~~~~g~~lt~e~~e~~~~~s~p~l~~~~~~I~RL~NDi~S~k~E~~rG~~assV~cYMke~~gvS~EeA~~~i~ 751 (817)
T 3sdr_A 672 LLLSGVLIMDGQLLSQEALEKVDYPGRRVLTELNSLISRLADDTKTYKAEKARGELASSIECYMKDHPECTEEEALDHIY 751 (817)
T ss_dssp HHHHHHTTCTTCCCCHHHHHTTCCTTSCSHHHHHHHHHHHHHHHHSSCC------CCCHHHHHHHHSTTSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHhcccccchHHHHHHHHHHHHHhccchHHHHHHhcCCcchHHHHHHHhCCCCCHHHHHHHHH
Confidence 8888999999999999999954 445999999999999999999999999999999999999999 799999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhhhhccccccCCCCCCChh-HHHHHHhhhccccCC
Q 008620 495 KQVSNAWKDINEECLRPTVVPVPLLIRILNLTRAADVIYKYKDGYTDSEE-LKDFIVSLLINPVPI 559 (559)
Q Consensus 495 ~~i~~~wk~ln~e~l~~~~~p~~~~~~~ln~aR~~~~~Y~~~Dg~t~~~~-~k~~i~~ll~~pi~~ 559 (559)
++|+++||+||++|++++++|++|+++++|++|++++||+++||||.|+. ||++|++||++|||+
T Consensus 752 ~~Ie~~wKeln~e~l~~~~~p~~~~~~~ln~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~pi~l 817 (817)
T 3sdr_A 752 SILEPAVKELTREFLKPDDVPFACKKMLFEETRVTMVIFKDGDGFGVSKLEVKDHIKECLIEPLPL 817 (817)
T ss_dssp HHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHHHHHHHHTCSCCSSCCCHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhcCCCCC
Confidence 99999999999999998899999999999999999999999999999975 999999999999986
No 8
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=100.00 E-value=4.5e-143 Score=1214.27 Aligned_cols=502 Identities=30% Similarity=0.539 Sum_probs=465.9
Q ss_pred HHH-HHHHHHHHhhh-----ccCcccchhHHHHHHHhCcccccHHHHHHHHHHhHhc-CCCCCCCCC-C--CCChhHHHH
Q 008620 53 HLE-LKKEIRRMLKA-----VNKTSHTLELIDAIQRLGVSYHFESEIDEILGKMHKT-YRDCDLCDN-E--NDELYYISL 122 (559)
Q Consensus 53 ~~~-lk~~v~~~~~~-----~~~~~~~l~lID~lqrLGi~~hFe~EI~~~L~~i~~~-~~~~~~~~~-~--~~dl~~~al 122 (559)
-.+ |...|++.-++ +.+++++|++||+||||||+|||++||+++|++||+. ...+..+ + . ..||++|||
T Consensus 223 ~~~YL~~~~~~~~g~VP~~yP~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~-~~~~~~~Dl~~tAl 301 (764)
T 3p5p_A 223 CFTFLNNLLDKFGGCVPCMYSIDLLERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGW-GRDSLVPDLNTTAL 301 (764)
T ss_dssp HHHHHHHHHHHHTSCCCSSCCCHHHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHHHTCCTTCCCS-STTCSSCCHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCcCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhccccc-ccCCCCCCHHHHHH
Confidence 345 99999998664 3789999999999999999999999999999999985 1111111 1 1 369999999
Q ss_pred HHHHhhhcCccccccccccccccccccccc---cccChHHHHhHhhhcccCCCCccHHHHHHHHHHHHHHHHHhh---cC
Q 008620 123 QFRLFRQNGYRISADVFNTFEGSDGKFKAS---LAKDVRGMLSLYEATHLRVHGENILDEALAFTTSHLESVAKQ---VC 196 (559)
Q Consensus 123 ~FRlLR~~Gy~vS~dvf~~F~d~~g~F~~~---l~~d~~glL~LYeAs~l~~~gE~iLdea~~ft~~~L~~~~~~---~~ 196 (559)
+|||||||||+||||||++|+|++|+|+++ +.+|++|||||||||||++|||+|||||++||++||++.+.+ ++
T Consensus 302 ~FRlLR~~Gy~VS~dvf~~F~d~~g~F~~~~~~~~~dv~gmL~LYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~ 381 (764)
T 3p5p_A 302 GLRTLRMHGYNVSSDVLNNFKDENGRFFSSAGQTHVELRSVVNLFRASDLAFPDERAMDDARKFAEPYLREALATKISTN 381 (764)
T ss_dssp HHHHHHHTTCCCCGGGGGGGBCTTSCBCSCTTCSCCCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHHHTSCSS
T ss_pred HHHHHHhcCCCccHhHHHhhhcCCCCccccccccccccHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 999999999999999999999999999985 589999999999999999999999999999999999998763 57
Q ss_pred CcHHHHHHHHccCcccccchhhHHhhhhhcccCCCc------------CcHHHHHHHhhhhHHHhHhhHHHHHHHHHHHH
Q 008620 197 SPLAEQVKHALVQPIHKGLERLEARHYIPIYQGESS------------HNEALLTFAKLDFNGLQKLHQKELGDISRWWK 264 (559)
Q Consensus 197 ~~l~~~V~~aL~~P~~~~~~rlear~yI~~y~~~~~------------~n~~lLelAkldFn~~Q~~hq~El~~lsrWwk 264 (559)
++|++||+|||++|||+++||||||+||++|++++. +|++||||||||||+||++||+||++++||||
T Consensus 382 ~~L~~eV~~aL~~P~~~~l~Rlear~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~l~rWwk 461 (764)
T 3p5p_A 382 TKLFKEIEYVVEYPWHMSIPRLEARSYIDSYDDNYVWQRKTLYRMPSLSNSKCLELAKLDFNIVQSLHQEELKLLTRWWK 461 (764)
T ss_dssp SHHHHHHHHHHHSCGGGCCHHHHHHHHHHHCCTTCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhcCchhccchHHHHHHHHHHhcccchhhhcccccccccccHHHHHHHHHHHHHHHHHhHHHhhhhceeHH
Confidence 889999999999999999999999999999998866 49999999999999999999999999999999
Q ss_pred HhCCCCCChhhHhhHHHHHHhhhccccCCCcchhHHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHhhhchhhhccCC
Q 008620 265 ELDFAHKLPFVRDRIAEVYFWAVGVHFEPQYSFARKLFTKVIYMTSIIDDIYDVYGKIEELDLFTSAIERWDINAIDQLP 344 (559)
Q Consensus 265 ~~~l~~~l~faRdr~ve~yf~~~~~~feP~~s~~Rl~~aK~~~l~~iiDD~yD~~gt~eEl~~ft~ai~rWd~~~~~~lp 344 (559)
++|+ .++||||||++|||||++| |||+||.+|+++||+++|++++||+||+|||+||+++||+||+|||++++++||
T Consensus 462 ~~~l-~~l~faRdr~ve~Yfw~~~--feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~LP 538 (764)
T 3p5p_A 462 ESGM-ADINFTRHRVAEVYFSSAT--FEPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTSLLHEIP 538 (764)
T ss_dssp HTST-TTTTCCHHHHHHHHHHTCC--CCGGGHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSTTGGGSC
T ss_pred hcCC-CcCccHHHHHHHHHHHHHh--CCccchHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHcCchhhhcCc
Confidence 9999 5999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh-hcccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHhhhhhcchhhHHHHH
Q 008620 345 EYMKLCYRALINVYSEVEKDLAS-QAKLYRLHYAKEAMKNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPNLSAIS 423 (559)
Q Consensus 345 eymk~~~~al~~~~~ei~~~~~~-~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~~~~~~~ 423 (559)
+|||+||.+|+++++|++.++.+ +|+ ++++|++++|++++++|++||+|+++||+||+||||+||++|+|++++++.+
T Consensus 539 eymk~~f~aL~~~~~ei~~~~~~~~g~-~~~~yl~~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vSsg~~~l~~~~ 617 (764)
T 3p5p_A 539 ECMQTCFKVWFKLMEEVNNDVVKVQGR-DMLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQP 617 (764)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCc-chHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhcchhchHHHHHHHH
Confidence 99999999999999999988665 665 9999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCChhHHhhhcCchHHHHHHhHHhHhccCccchhhhhccCCCcchhHHHHhhc-CCCHHHHHHHHHHHHHHHHH
Q 008620 424 FVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMASHKFEQSRGHVASSVECYINQY-GATEEEAYSEFRKQVSNAWK 502 (559)
Q Consensus 424 ~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~~G~~~n~V~cyM~e~-g~S~eeA~~~i~~~i~~~wk 502 (559)
++++|+.+|+++++|+..+|+|+++++.|+||+|||+||++|+++|+++|+|+|||+|+ |+|+|+|+++++++|+++||
T Consensus 618 ~~~~G~~lt~e~~e~~~~~~~l~~~~~~I~RL~NDi~S~k~E~~rG~~as~V~cYMke~~gvSeEeA~~~i~~~Ie~~wK 697 (764)
T 3p5p_A 618 ILLMGELVKDDVVEKVHYPSNMFELVSLSWRLTNDTKTYQAEKARGQQASGIACYMKDNPGATEEDAIKHICRVVDRALK 697 (764)
T ss_dssp HHTSSSCCCGGGHHHHSTTSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHHHSTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCcHHHHhhhhhhHHHHHHHHHHHHhhhcccchHHHHhcCCcchHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999965569999999999999999999999999999999999999999 79999999999999999999
Q ss_pred HHHHhhcC-CCCCCHHHHHHHHHHhhhhccccccCCCCCCChh-HHHHHHhhhccccCC
Q 008620 503 DINEECLR-PTVVPVPLLIRILNLTRAADVIYKYKDGYTDSEE-LKDFIVSLLINPVPI 559 (559)
Q Consensus 503 ~ln~e~l~-~~~~p~~~~~~~ln~aR~~~~~Y~~~Dg~t~~~~-~k~~i~~ll~~pi~~ 559 (559)
+||++|++ ++++|++|+++++|++|++++||+++||||.|+. ||++|++||++||++
T Consensus 698 eln~e~l~~~~~~p~~~~~~~~n~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~~ 756 (764)
T 3p5p_A 698 EASFEYFKPSNDIPMGCKSFIFNLRLCVQIFYKFIDGYGIANEEIKDYIRKVYIDPIQV 756 (764)
T ss_dssp HHHHHHHSCCSSSCHHHHHHHHHTHHHHHHHSCC-------CCCHHHHHHHHHTCCCCC
T ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhcCCcc
Confidence 99999997 7789999999999999999999999999999976 999999999999984
No 9
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=100.00 E-value=3.9e-143 Score=1217.71 Aligned_cols=502 Identities=31% Similarity=0.554 Sum_probs=468.8
Q ss_pred HHH-HHHHHHHHhhh-----ccCcccchhHHHHHHHhCcccccHHHHHHHHHHhHhc-CCCCCCCCC---CCCChhHHHH
Q 008620 53 HLE-LKKEIRRMLKA-----VNKTSHTLELIDAIQRLGVSYHFESEIDEILGKMHKT-YRDCDLCDN---ENDELYYISL 122 (559)
Q Consensus 53 ~~~-lk~~v~~~~~~-----~~~~~~~l~lID~lqrLGi~~hFe~EI~~~L~~i~~~-~~~~~~~~~---~~~dl~~~al 122 (559)
-.+ |...|++.-++ +.+++++|++||+||||||+|||++||+++|++||+. ...+..+ + ...||++|||
T Consensus 247 ~~~YL~~~~~~~~g~VP~~yP~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~-~~~~~~~Dl~~tAl 325 (785)
T 3s9v_A 247 CLDFLNFVLKKFGNHVPCHYPLDLFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGW-ARENPVPDIDDTAM 325 (785)
T ss_dssp HHHHHHHHHHHHSSCCCSSCCCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTCCTTCCCS-STTCSSCCHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCcCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhccccc-cccCCCCCHHHHHH
Confidence 345 99999988664 3789999999999999999999999999999999985 1111111 1 1269999999
Q ss_pred HHHHhhhcCcccccccccccccccccccccc---ccChHHHHhHhhhcccCCCCccHHHHHHHHHHHHHHHHHhh-----
Q 008620 123 QFRLFRQNGYRISADVFNTFEGSDGKFKASL---AKDVRGMLSLYEATHLRVHGENILDEALAFTTSHLESVAKQ----- 194 (559)
Q Consensus 123 ~FRlLR~~Gy~vS~dvf~~F~d~~g~F~~~l---~~d~~glL~LYeAs~l~~~gE~iLdea~~ft~~~L~~~~~~----- 194 (559)
+|||||||||+||||||++|+|++|+|++++ .+|++|||||||||||++|||+|||||++||++||++.+..
T Consensus 326 ~FRlLR~~Gy~VS~dvf~~F~d~~g~F~~~~~e~~~dv~g~L~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~d 405 (785)
T 3s9v_A 326 GLRILRLHGYNVSSDVLKTFRDENGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGETIMEEAKLCTERYLRNALENVDAFD 405 (785)
T ss_dssp HHHHHHHTTCCCCGGGGGGGBCTTSCBCSSTTCCCCCHHHHHHHHHHHTSCCTTCHHHHHHHHHHHHHHHHHTTTCCTTC
T ss_pred HHHHHHhcCCCCCHHHHHHHHhcCCCeeeccccccccccccHHHHhHhhcCCCCcHHHHHHHHHHHHHHHHHHhcccccc
Confidence 9999999999999999999999999999976 69999999999999999999999999999999999998653
Q ss_pred ---cCCcHHHHHHHHccCcccccchhhHHhhhhhcccCCCc------------CcHHHHHHHhhhhHHHhHhhHHHHHHH
Q 008620 195 ---VCSPLAEQVKHALVQPIHKGLERLEARHYIPIYQGESS------------HNEALLTFAKLDFNGLQKLHQKELGDI 259 (559)
Q Consensus 195 ---~~~~l~~~V~~aL~~P~~~~~~rlear~yI~~y~~~~~------------~n~~lLelAkldFn~~Q~~hq~El~~l 259 (559)
++++|++||+|||++|||+++||||||+||++|++++. +|++||||||||||+||++||+||+++
T Consensus 406 ~~~~~~~L~~eV~~aL~~P~~~~l~RleaR~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~l 485 (785)
T 3s9v_A 406 KWAFKKNIRGEVEYALKYPWHKSMPRLEARSYIENYGPDDVWLGKTVYMMPYISNEKYLELAKLDFNKVQSIHQTELQDL 485 (785)
T ss_dssp TTCSSSCHHHHHHHHHHSCGGGCCHHHHHHHHHHHCCTTCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCcHHHHHHHHhCCccccCchHHHHHHHHHHhcccchhhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999998875 399999999999999999999999999
Q ss_pred HHHHHHhCCCCCChhhHhhHHHHHHhhhccccCCCcchhHHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHhhhchhh
Q 008620 260 SRWWKELDFAHKLPFVRDRIAEVYFWAVGVHFEPQYSFARKLFTKVIYMTSIIDDIYDVYGKIEELDLFTSAIERWDINA 339 (559)
Q Consensus 260 srWwk~~~l~~~l~faRdr~ve~yf~~~~~~feP~~s~~Rl~~aK~~~l~~iiDD~yD~~gt~eEl~~ft~ai~rWd~~~ 339 (559)
+||||++|+ .++||||||++|||||++|++|||+||.+|+++||+++|++++||+||+|||+|||++||+||+|||+++
T Consensus 486 srWwk~~~l-~~l~faRdr~ve~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~ 564 (785)
T 3s9v_A 486 RRWWKSSGF-TDLNFTRERVTEIYFSPASFIFEPEFSKCREVYTKTSNFTVILDDLYDAHGSLDDLKLFTESVKRWDLSL 564 (785)
T ss_dssp HHHHHHTTT-TSCSSSCCCHHHHHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHTSSSS
T ss_pred hHHHHHcCC-CcCccHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCchh
Confidence 999999999 6999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCChhHHHHHHHHHHHHHHHHHHHHh-hcccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHhhhhhcchhh
Q 008620 340 IDQLPEYMKLCYRALINVYSEVEKDLAS-QAKLYRLHYAKEAMKNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPN 418 (559)
Q Consensus 340 ~~~lpeymk~~~~al~~~~~ei~~~~~~-~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~~ 418 (559)
+++||+|||+||.+|+++++|++.++.+ +|+ ++++|++++|++++++|++||+|+++||+||+||||+||++|+|+++
T Consensus 565 ~~~Lpeymk~~f~aL~~~~nei~~~~~~~~g~-~~~~ylk~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vS~g~~~ 643 (785)
T 3s9v_A 565 VDQMPQQMKICFVGFYNTFNDIAKEGRERQGR-DVLGYIQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIENASVSIALGT 643 (785)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTS-CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHH
T ss_pred hhcCChhHHHHHHHHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHH
Confidence 9999999999999999999999988666 565 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCChhHHhhhcCchHHHHHHhHHhHhccCccchhhhhccCCCcchhHHHHhhc-CCCHHHHHHHHHHHH
Q 008620 419 LSAISFVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMASHKFEQSRGHVASSVECYINQY-GATEEEAYSEFRKQV 497 (559)
Q Consensus 419 ~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~~G~~~n~V~cyM~e~-g~S~eeA~~~i~~~i 497 (559)
++++++++||+.+|+|+++|+..+|+|+++++.|+||+|||+||++|+++|+++|+|+|||+|+ |+|+|+|+++++++|
T Consensus 644 l~~~~~~~~G~~lt~e~~e~~~~~~~l~~~~~~I~RL~NDi~S~k~E~~rG~~as~V~cYMke~~gvSeEeA~~~i~~~I 723 (785)
T 3s9v_A 644 VVLISALFTGEVLTDEVLSKIDRESRFLQLMGLTGRLVNDTKTYQAERGQGEVASAIQCYMKDHPKISEEEALQHVYSVM 723 (785)
T ss_dssp HHHHHTTCSSSCCCHHHHTTTSTTSHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHhcccccHHHHHHHHHHHHHhcccchhhHHHhcCCcchHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999955559999999999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHhhhhccccccCCCCCCChh--HHHHHHhhhccccC
Q 008620 498 SNAWKDINEECLRPTVVPVPLLIRILNLTRAADVIYKYKDGYTDSEE--LKDFIVSLLINPVP 558 (559)
Q Consensus 498 ~~~wk~ln~e~l~~~~~p~~~~~~~ln~aR~~~~~Y~~~Dg~t~~~~--~k~~i~~ll~~pi~ 558 (559)
+++||+||++|++++ +|++|+++++|++|++++||+++||||.|+. ||++|++||++||.
T Consensus 724 e~~wKeln~e~l~~~-~p~~~~~~~~n~aR~~~~~Y~~~Dg~t~~~~~~~k~~i~~ll~~Pi~ 785 (785)
T 3s9v_A 724 ENALEELNREFVNNK-IPDIYKRLVFETARIMQLFYMQGDGLTLSHDMEIKEHVKNCLFQPVA 785 (785)
T ss_dssp HHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHHHHTCCCC----CHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHhcccCC
Confidence 999999999999977 9999999999999999999999999999974 99999999999983
No 10
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=100.00 E-value=1.9e-109 Score=930.70 Aligned_cols=452 Identities=23% Similarity=0.325 Sum_probs=390.4
Q ss_pred HHHHH-HHHHHHHHhhh-----ccCcccchhHHHHHHHhCcccccHHHHHHHHHHhHhc-CCCCCCCCC--CCCChhHHH
Q 008620 51 VKHLE-LKKEIRRMLKA-----VNKTSHTLELIDAIQRLGVSYHFESEIDEILGKMHKT-YRDCDLCDN--ENDELYYIS 121 (559)
Q Consensus 51 ~~~~~-lk~~v~~~~~~-----~~~~~~~l~lID~lqrLGi~~hFe~EI~~~L~~i~~~-~~~~~~~~~--~~~dl~~~a 121 (559)
.+..+ |+..|+++.++ +.|++++|++||+||||||+|||++||+++|++||+. ...+..+.. ...||++||
T Consensus 220 ~~~l~YL~~~v~k~~g~VP~~yP~d~~e~L~lID~LqRLGIs~hFe~EI~~~L~~i~~~~~~~g~~~~~~~~~~DL~~tA 299 (727)
T 3pya_A 220 SNCLEYLRNAVKRFNGGVPNVFPVDLFEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTA 299 (727)
T ss_dssp HHHHHHHHHHHHHTTTCCCSSCCCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTCCTTCCCSSSSCSCCCHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcCcccccCCCCCCHHHHH
Confidence 45566 99999998875 3789999999999999999999999999999999975 111111100 136999999
Q ss_pred HHHHHhhhcCcccccccccccccccccccccc---ccChHHHHhHhhhcccCCCCccHHHHHHHHHHHHHHHHHhh----
Q 008620 122 LQFRLFRQNGYRISADVFNTFEGSDGKFKASL---AKDVRGMLSLYEATHLRVHGENILDEALAFTTSHLESVAKQ---- 194 (559)
Q Consensus 122 l~FRlLR~~Gy~vS~dvf~~F~d~~g~F~~~l---~~d~~glL~LYeAs~l~~~gE~iLdea~~ft~~~L~~~~~~---- 194 (559)
|+|||||||||+||||||++|+ ++|+|++.. .+|++|||+||||||+++|||+|||||++||++||++.+..
T Consensus 300 L~FRLLRqhGy~VS~DvF~~Fk-~~G~F~~~~~e~~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~ 378 (727)
T 3pya_A 300 MAFRLLRQHGYQVSADVFKNFE-KEGEFFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNAKEFSYNYLLEKREREELI 378 (727)
T ss_dssp HHHHHHHHTTCCCCGGGGGGGE-ETTEECSSTTCCCCCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHhCCCCCCHHHHHhcc-CCCcccccccccccccHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 9999999999999999999999 889999543 68999999999999999999999999999999999998752
Q ss_pred ----cCCcHHHHHHHHccCcccccchhhHHhhhhhcccCCCc-------------CcHHHHHHHhhhhHHHhHhhHHHHH
Q 008620 195 ----VCSPLAEQVKHALVQPIHKGLERLEARHYIPIYQGESS-------------HNEALLTFAKLDFNGLQKLHQKELG 257 (559)
Q Consensus 195 ----~~~~l~~~V~~aL~~P~~~~~~rlear~yI~~y~~~~~-------------~n~~lLelAkldFn~~Q~~hq~El~ 257 (559)
++++|+++|+|||++|||+++||||||+||++|+++++ +|++||||||||||+||++||+||+
T Consensus 379 dkw~~~~~L~~~V~~aL~~P~~~~l~RleaR~yI~~Y~~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~ 458 (727)
T 3pya_A 379 DKWIIMKDLPGEIGFALEIPWYASLPRVETRFYIDQYGGENDVWIGKTLYRMPYVNNNGYLELAKQDYNNCQAQHQLEWD 458 (727)
T ss_dssp CSSEECSCHHHHHHHHHHSCGGGCCHHHHHHHHHHHCCGGGCEEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCcHHHHHHHHhcCcHhcCChHHHHHHHHHHhccCcchhhhhhhccccccccHHHHHHHHHhHHHHHHHhHHHHh
Confidence 25789999999999999999999999999999997654 6999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCChhhHhhHHHHHHhhhccccCCCcchhHHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHhhhch
Q 008620 258 DISRWWKELDFAHKLPFVRDRIAEVYFWAVGVHFEPQYSFARKLFTKVIYMTSIIDDIYDVYGKIEELDLFTSAIERWDI 337 (559)
Q Consensus 258 ~lsrWwk~~~l~~~l~faRdr~ve~yf~~~~~~feP~~s~~Rl~~aK~~~l~~iiDD~yD~~gt~eEl~~ft~ai~rWd~ 337 (559)
+++||||++|| .++||||||++|||||++|++|||+||.+|+++||++++++++||+||+|| |||++||+||+|||.
T Consensus 459 ~lsrWwk~~~l-~~l~faRdr~ve~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~yG--eEl~~ft~av~rwd~ 535 (727)
T 3pya_A 459 IFQKWYEENRL-SEWGVRRSELLECYYLAAATIFESERSHERMVWAKSSVLVKAISSSFGESS--DSRRSFSDQFHEYIA 535 (727)
T ss_dssp HHHHHHHHTTG-GGGTCCHHHHHHHHHHHHTTSCCGGGHHHHHHHHHHHHHHHHHHHHHCSSH--HHHHHHHHHHHHHC-
T ss_pred hhheeHHhcCc-ccCCchhhHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHhccc
Confidence 99999999999 579999999999999999999999999999999999999999999999999 999999999999997
Q ss_pred h---------hhcc---CChh--HHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCH
Q 008620 338 N---------AIDQ---LPEY--MKLCYRALINVYSEVEKDLASQAKLYRLHYAKEAMKNQVKHYFFEAKWYHQNYIPTV 403 (559)
Q Consensus 338 ~---------~~~~---lpey--mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~vPs~ 403 (559)
. +.+. +|+| ||+||.+|++++||++.++.+++|.++++|++++|.++++++++||+ +
T Consensus 536 ~~~~~~~~~~~~~~~~~~p~~~~mk~~f~aL~~t~nei~~~~~k~qg~~v~~~l~~~W~~~l~s~~~Ea~-~-------- 606 (727)
T 3pya_A 536 NARRSDHHFNDRNMRLDRPGSVQASRLAGVLIGTLNQMSFDLFMSHGRDVNNLLYLSWGDWMEKWKLYGD-E-------- 606 (727)
T ss_dssp ------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHSS-C--------
T ss_pred ccccccccccchhhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHhcc-c--------
Confidence 4 3333 2877 99999999999999998765555559999999999999999999997 2
Q ss_pred HHHHHhhhhhcchhhHHHHHHHhcCCCCChhHHhhhcCchHHHHHHhHHhHhccCccchhhhhccCCCcchhHHHHhhcC
Q 008620 404 DEYMTVALISSGHPNLSAISFVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMASHKFEQSRGHVASSVECYINQYG 483 (559)
Q Consensus 404 eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~~G~~~n~V~cyM~e~g 483 (559)
+| + . +++-++.+..|..+++ ++.+ ++|..|.++++.||||+||+.+|++|+
T Consensus 607 ~E----A-----e-llv~~I~l~sG~~l~e-~l~~-~ey~~L~~ltn~icrllndl~~~~~E~----------------- 657 (727)
T 3pya_A 607 GE----G-----E-LMVKMIILMKNNDLTN-FFTH-THFVRLAEIINRICLPRQYLKARRNDE----------------- 657 (727)
T ss_dssp CH----H-----H-HHHHHHHHHSSSCGGG-GGSS-HHHHHHHHHHHHHSCCCC------CHH-----------------
T ss_pred cc----e-----e-eeeeeeecCCCcchHh-hccC-hhHHHHHHHHHHHhHHHhHHHHHHHHH-----------------
Confidence 33 1 1 3333333333888898 8887 889999999999999999999999977
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhcCCC--CCCHHHHHHHHHHhhhhccccccCCCCCCChhHHHHHHhhhccccC
Q 008620 484 ATEEEAYSEFRKQVSNAWKDINEECLRPT--VVPVPLLIRILNLTRAADVIYKYKDGYTDSEELKDFIVSLLINPVP 558 (559)
Q Consensus 484 ~S~eeA~~~i~~~i~~~wk~ln~e~l~~~--~~p~~~~~~~ln~aR~~~~~Y~~~Dg~t~~~~~k~~i~~ll~~pi~ 558 (559)
.+++.+.|+..|++|++.+++++ .+|++| |+++|++.||.. ||++|+ |+.||.+||++||-
T Consensus 658 ------~~~~~~~IE~~mqEL~~lVl~~~~~~ip~~~-----tf~~V~ksFYy~--ay~~p~-i~~hI~kVl~~~~~ 720 (727)
T 3pya_A 658 ------KEKTIKSMEKEMGKMVELALSESDTFRDVSI-----TFLDVAKAFYYF--ALCGDH-LQTHISKVLFQKVG 720 (727)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHSCCTTTHHHHH-----HHHHHHHHHHHH--HHHTTS-CHHHHHHHHHSCCC
T ss_pred ------HHHHHHHHHHHHHHHHHHHhccCCCCCCCcc-----cHHHHHHHHHhh--hcCCHH-HHHHHHHHHcCccc
Confidence 55789999999999999999854 699999 888888899975 999999 99999999999984
No 11
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=100.00 E-value=2.1e-51 Score=428.15 Aligned_cols=251 Identities=15% Similarity=0.114 Sum_probs=228.9
Q ss_pred hHhhHHHHHHHH-HHHHHhCCCCCChhhHhhHHHHHHhhhccccCCCcchhHH-HHHHHHHHhhhhhcccccc--CCHHH
Q 008620 249 QKLHQKELGDIS-RWWKELDFAHKLPFVRDRIAEVYFWAVGVHFEPQYSFARK-LFTKVIYMTSIIDDIYDVY--GKIEE 324 (559)
Q Consensus 249 Q~~hq~El~~ls-rWwk~~~l~~~l~faRdr~ve~yf~~~~~~feP~~s~~Rl-~~aK~~~l~~iiDD~yD~~--gt~eE 324 (559)
+..|.+|++..+ +||+++|+.+ .||+|+|++++|||.++++++|+++.+|+ ++||+++|+|++||+||.+ ||++|
T Consensus 15 ~~p~~~e~~~~~~~W~~~~~l~~-~~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~~~~~~~ee 93 (337)
T 1ps1_A 15 QSPDHARAEAEQLAWPRSLGLIR-SDAAAERHLRGGYADLASRFYPHATGADLDLGVDLMSWFFLFDDLFDGPRGENPED 93 (337)
T ss_dssp CCTTHHHHHHSTTHHHHHTTSCC-SHHHHHHHHTTCHHHHHHHHCTTCCTHHHHHHHHHHHHHHHHHHTTSSGGGGCHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHhCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhhccCCcCCCCHHH
Confidence 455778887766 6999999964 69999999999999999999999999999 9999999999999999998 69999
Q ss_pred HHHHHHHHhhhchhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhcCCCC-CH
Q 008620 325 LDLFTSAIERWDINAIDQLPEYMKLCYRALINVYSEVEKDLASQAKLYRLHYAKEAMKNQVKHYFFEAKWYHQNYIP-TV 403 (559)
Q Consensus 325 l~~ft~ai~rWd~~~~~~lpeymk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~vP-s~ 403 (559)
++.|++++.+|+.+ .+|+++++++.++.+++++++... ++....+++++|++|++++++||+|+.+|++| |+
T Consensus 94 ~~~~~~~l~~~~~~---~~p~~~~~~~~~l~d~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~Ea~~~~~~~~P~s~ 166 (337)
T 1ps1_A 94 TKQLTDQVAAALDG---PLPDTAPPIAHGFADIWRRTCEGM----TPAWCARSARHWRNYFDGYVDEAESRFWNAPCDSA 166 (337)
T ss_dssp HHHHHHHHHGGGTS---CCCTTSCHHHHHHHHHHHHHHTTS----CHHHHHHHHHHHHHHHHHHHHHHTTC-------CH
T ss_pred HHHHHHHHHHHcCC---CCCCCCChHHHHHHHHHHHHhccC----CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCH
Confidence 99999999999864 479999999999999999997542 34567899999999999999999999999999 99
Q ss_pred HHHHHhhhhhcchhhHHHHHHHhcCCCCChhHHhhhcCchHHHHHHhHHhHhccCccchhhhhccCCCcchhHHHHhhcC
Q 008620 404 DEYMTVALISSGHPNLSAISFVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMASHKFEQSRGHVASSVECYINQYG 483 (559)
Q Consensus 404 eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~~G~~~n~V~cyM~e~g 483 (559)
+|||++|++|+|++++++++++++|..+|++++++ +.+++|+++++.++||+|||+||+||+++|+++|+|.|||+++|
T Consensus 167 eEYl~~r~~s~g~~~~~~~~~~~~g~~l~~~~~~~-p~~~~l~~~~~~i~rL~NDl~S~~kE~~~G~~~n~V~~~m~~~g 245 (337)
T 1ps1_A 167 AQYLAMRRHTIGVQPTVDLAERAGRFEVPHRVFDS-AVMSAMLQIAVDVNLLLNDIASLEKEEARGEQNNMVMILRREHG 245 (337)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHTS-HHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCCCSHHHHHHHHHC
T ss_pred HHHHHHcccccchhhHHHHHHHHcCCCCCHHHHhC-hHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCcchHHHHHHHHcC
Confidence 99999999999999999999999999999999987 77789999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhh
Q 008620 484 ATEEEAYSEFRKQVSNAWKDINEEC 508 (559)
Q Consensus 484 ~S~eeA~~~i~~~i~~~wk~ln~e~ 508 (559)
+|+|+|++++.++|+++||++|++.
T Consensus 246 ~s~eeA~~~v~~~i~~~~~~~~~~~ 270 (337)
T 1ps1_A 246 WSKSRSVSHMQNEVRARLEQYLLLE 270 (337)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987
No 12
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=100.00 E-value=3.1e-49 Score=404.75 Aligned_cols=242 Identities=14% Similarity=0.066 Sum_probs=222.9
Q ss_pred hhHHHHHHHH-HHHHHhCCCCCChhhHhhHHHHHHhhhccccCCCcchhHH-HHHHHHHHhhhhhccccccCCHHHHHHH
Q 008620 251 LHQKELGDIS-RWWKELDFAHKLPFVRDRIAEVYFWAVGVHFEPQYSFARK-LFTKVIYMTSIIDDIYDVYGKIEELDLF 328 (559)
Q Consensus 251 ~hq~El~~ls-rWwk~~~l~~~l~faRdr~ve~yf~~~~~~feP~~s~~Rl-~~aK~~~l~~iiDD~yD~~gt~eEl~~f 328 (559)
-|.+|++..+ +||+++|+. +.||+|+|++++|||.++++++|+++.+|+ ++||++.|+|++||+||. |+.+|++.|
T Consensus 13 P~~~~~~~~~~~W~~~~~l~-~~~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~~k~~~~~~~~DD~~D~-~~~~e~~~~ 90 (300)
T 1di1_A 13 PRVKEVQDEVDGYFLENWKF-PSFKAVRTFLDAKFSEVTCLYFPLALDDRIHFACRLLTVLFLIDDVLEH-MSFADGEAY 90 (300)
T ss_dssp TTHHHHHHHHHHHHHHHSCC-SSHHHHHHHHHHCHHHHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHHH-SCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHhcCcchhhhhcCCCCCHHHHHHHHHHHHHHHHHHhcccc-CCHHHHHHH
Confidence 3668888777 577999996 579999999999999999999999999999 999999999999999999 889999999
Q ss_pred HHHHhhhchhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHH
Q 008620 329 TSAIERWDINAIDQLPEYMKLCYRALINVYSEVEKDLASQAKLYRLHYAKEAMKNQVKHYFFEAKWYHQNYIPTVDEYMT 408 (559)
Q Consensus 329 t~ai~rWd~~~~~~lpeymk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~vPs~eEYl~ 408 (559)
++++.+|+.+ +.+|+|+++++.++++++++++.... .+.++.|+.++++++ ||+|+..|++||++|||+
T Consensus 91 ~~~~~~~~~~--~~lp~~~~~~~~~l~d~~~~~~~~~~--------~~~~~~~~~~~~~~~-ea~~~~~~~~Ps~eeYl~ 159 (300)
T 1di1_A 91 NNRLIPISRG--DVLPDRTKPEEFILYDLWESMRAHDA--------ELANEVLEPTFVFMR-AQTDRARLSIHELGHYLE 159 (300)
T ss_dssp HHHHHHHHHT--SSCCCTTCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH-TTTCCCCCCCCSHHHHHH
T ss_pred HHHHHHHccC--CCCCCCccHHHHHHHHHHHHHHhhCh--------HHHHHHHHHHHHHHH-HHhccccCCCCCHHHHHH
Confidence 9999999875 46899999999999999999987652 256677999999997 899999999999999999
Q ss_pred hhhhhcchhhHHHHHHHhcCCCCChhHHhhhcCchHHHHHHhHHhHhccCccchhhhhccCC--------CcchhHHHHh
Q 008620 409 VALISSGHPNLSAISFVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMASHKFEQSRGH--------VASSVECYIN 480 (559)
Q Consensus 409 ~~~~S~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~~G~--------~~n~V~cyM~ 480 (559)
+|++|+|++++++++++++|..+|+++++. .++|+++++.++||+|||+||+||+++|+ ++|+|.|||+
T Consensus 160 ~r~~s~g~~~~~~~~~~~~g~~l~~e~~~~---~~~l~~~~~~~~~l~NDl~S~~kE~~~g~~~h~~~~~~~n~V~~~m~ 236 (300)
T 1di1_A 160 YREKDVGKALLSALMRFSMGLRLSADELQD---MKALEANCAKQLSVVNDIYSYDKEEEASRTGHKEGAFLCSAVKVLAE 236 (300)
T ss_dssp HHHTCHHHHHHHHHHHHHHTCCCCHHHHHT---THHHHHHHHHHHHHHHHHHHTTTTCCC----------CCCHHHHHHH
T ss_pred HHhhhccHHHHHHHHHHHcCCCCCHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHhhccccccccccchhHHHHHH
Confidence 999999999999999999999999999983 69999999999999999999999999999 7799999999
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 008620 481 QYGATEEEAYSEFRKQVSNAWKDINEEC 508 (559)
Q Consensus 481 e~g~S~eeA~~~i~~~i~~~wk~ln~e~ 508 (559)
++|+|+|+|++++.++|+++|+++|+..
T Consensus 237 ~~g~s~eeA~~~~~~~i~~~~~~~~~~~ 264 (300)
T 1di1_A 237 ESKLGIPATKRVLWSMTREWETVHDEIV 264 (300)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999865
No 13
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=100.00 E-value=5.7e-48 Score=399.41 Aligned_cols=246 Identities=13% Similarity=0.063 Sum_probs=221.5
Q ss_pred HHhHhhHHHHHHHH-HHHHHhCCCCCChhhHhhHHHHHHhhhccccCCCcchhHH-HHHHHHHHhhhhhccccccCCHHH
Q 008620 247 GLQKLHQKELGDIS-RWWKELDFAHKLPFVRDRIAEVYFWAVGVHFEPQYSFARK-LFTKVIYMTSIIDDIYDVYGKIEE 324 (559)
Q Consensus 247 ~~Q~~hq~El~~ls-rWwk~~~l~~~l~faRdr~ve~yf~~~~~~feP~~s~~Rl-~~aK~~~l~~iiDD~yD~~gt~eE 324 (559)
.-...|.+|++..+ +||+++|+..+ ||+|+|++++|||.++++++|+++.+|+ ++||+++|+|++||+||. |+++|
T Consensus 23 ~~~~p~~~e~~~~~~~W~~~~~l~~~-~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~-~~~~e 100 (320)
T 3bny_A 23 PLCHPLVEEVSKEVDGYFLQHWNFPN-EKARKKFVAAGFSRVTCLYFPKALDDRIHFACRLLTVLFLIDDLLEY-MSFEE 100 (320)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHSCCSS-HHHHHHHHHHCHHHHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHTT-SCHHH
T ss_pred CCCCcCHHHHHHHHHHHHHHcCCCCC-hHHHHHHHhcCchhhHhhhCCCCCHHHHHHHHHHHHHHHHhhccccc-CChhh
Confidence 33455778888877 57799999755 9999999999999999999999999999 999999999999999999 88999
Q ss_pred HHHHHHHHhhhchhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHH
Q 008620 325 LDLFTSAIERWDINAIDQLPEYMKLCYRALINVYSEVEKDLASQAKLYRLHYAKEAMKNQVKHYFFEAKWYHQNYIPTVD 404 (559)
Q Consensus 325 l~~ft~ai~rWd~~~~~~lpeymk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~vPs~e 404 (559)
++.|++++.+|+.+ +.+|+++++++.++++++++++... + .+.++.|+.++ ++++|++|+.+|++||++
T Consensus 101 ~~~~~~~l~~~~~~--~~~p~~~~~~~~al~d~~~e~~~~~-~-------~~~~~~~~~~~-~~~~e~~~~~~~~~Ps~e 169 (320)
T 3bny_A 101 GSAYNEKLIPISRG--DVLPDRSIPVEYIIYDLWESMRAHD-R-------EMADEILEPVF-LFMRAQTDRTRARPMGLG 169 (320)
T ss_dssp HHHHHHHHHHHHHT--SSCCCTTSHHHHHHHHHHHHHHHHH-H-------HHHHHTHHHHH-HHHHHTSCCCCCCCCCHH
T ss_pred HHHHHHHHHHHhcC--CCCCCCcCHHHHHHHHHHHHHHhhC-H-------HHHHHHHHHHH-HHHHHHhhhccCCCCCHH
Confidence 99999999999875 4689999999999999999998654 1 24455566777 599999999999999999
Q ss_pred HHHHhhhhhcchhhHHHHHHHhcCCCCChhHHhhhcCchHHHHHHhHHhHhccCccchhhhhccCC--------CcchhH
Q 008620 405 EYMTVALISSGHPNLSAISFVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMASHKFEQSRGH--------VASSVE 476 (559)
Q Consensus 405 EYl~~~~~S~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~~G~--------~~n~V~ 476 (559)
|||++|++|+|++++++++++++|..+|+++++. +++|+++++.++||+|||+||+||+++|+ ++|+|.
T Consensus 170 eYl~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~~---~~~l~~~~~~~~~L~NDl~S~~kE~~~g~~~~~~~~~~~N~V~ 246 (320)
T 3bny_A 170 GYLEYRERDVGKELLAALMRFSMGLKLSPSELQR---VREIDANCSKHLSVVNDIYSYEKELYTSKTAHSEGGILCTSVQ 246 (320)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHHH---THHHHHHHHHHHHHHHHHHHHHHHCC-----------CCSHHH
T ss_pred HHHHHhhhcccHHHHHHHHHHHcCCCCCHHHHHH---HHHHHHHHHHHHHHhcccchhHHHHHhhcccccccccccchHH
Confidence 9999999999999999999999999999999984 69999999999999999999999999998 789999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 008620 477 CYINQYGATEEEAYSEFRKQVSNAWKDINEEC 508 (559)
Q Consensus 477 cyM~e~g~S~eeA~~~i~~~i~~~wk~ln~e~ 508 (559)
|||+++|+|+|+|++++.+++++.|+++|+..
T Consensus 247 ~~m~~~g~s~eeA~~~~~~~i~~~~~~~~~l~ 278 (320)
T 3bny_A 247 ILAQEADVTAEAAKRVLFVMCREWELRHQLLV 278 (320)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999755
No 14
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=100.00 E-value=7.1e-46 Score=393.79 Aligned_cols=243 Identities=12% Similarity=0.015 Sum_probs=223.4
Q ss_pred HHHHHHHhCCCCCChhhHhhHHHHHHhhhccccCCCcchhHH-HHHHHHHHhhhhhccccc--cC-CHHHHHHHHHHHhh
Q 008620 259 ISRWWKELDFAHKLPFVRDRIAEVYFWAVGVHFEPQYSFARK-LFTKVIYMTSIIDDIYDV--YG-KIEELDLFTSAIER 334 (559)
Q Consensus 259 lsrWwk~~~l~~~l~faRdr~ve~yf~~~~~~feP~~s~~Rl-~~aK~~~l~~iiDD~yD~--~g-t~eEl~~ft~ai~r 334 (559)
+.+||+++|+. .-+++|+|+++++||.++++++|+++.+|+ ++||+++|+|++||+||. +| ++++++.|++++.+
T Consensus 66 ~~~W~~~~gl~-~~~~~r~r~~~~~~~~laa~~~P~as~erL~l~a~~~~w~f~~DD~~D~~~~g~~~~~~~~~~~~l~~ 144 (382)
T 3kb9_A 66 TRTWLLEKRLM-PADKVEEYADGLCYTDLMAGYYLGAPDEVLQAIADYSAWFFVWDDRHDRDIVHGRAGAWRRLRGLLHT 144 (382)
T ss_dssp HHHHHHHTTSS-CHHHHHHHHHHHCHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCC-CCHHHHHHHHhCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHHH
Confidence 45899999996 347899999999999999999999999999 999999999999999996 56 99999999999988
Q ss_pred hchhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHhhhhhc
Q 008620 335 WDINAIDQLPEYMKLCYRALINVYSEVEKDLASQAKLYRLHYAKEAMKNQVKHYFFEAKWYHQNYIPTVDEYMTVALISS 414 (559)
Q Consensus 335 Wd~~~~~~lpeymk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~ 414 (559)
+-.. ...+|++++++++++.+++++++..+. +....+++++|++++++|++||+|+.+|++||+||||++|++|+
T Consensus 145 ~l~~-~~~~p~~~~p~~~al~dl~~~~~~~~~----~~~~~r~~~~~~~~~~a~l~Ea~w~~~g~vPs~eEYl~~r~~s~ 219 (382)
T 3kb9_A 145 ALDS-PGDHLHHEDTLVAGFADSVRRLYAFLP----ATWNARFARHFHTVIEAYDREFHNRTRGIVPGVEEYLELRRLTF 219 (382)
T ss_dssp HHHS-CGGGTTCSSHHHHHHHHHHHHHTTSSC----HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HhcC-CCCCCCCCChHHHHHHHHHHHHHccCC----HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhc
Confidence 6222 233688999999999999999975422 23578999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHhcCCCCChhHHhhhcCchHHHHHHhHHhHhccCccchhhhhccCCCcchhHHHHhhcCCCHHHHHHHHH
Q 008620 415 GHPNLSAISFVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMASHKFEQSRGHVASSVECYINQYGATEEEAYSEFR 494 (559)
Q Consensus 415 g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~~G~~~n~V~cyM~e~g~S~eeA~~~i~ 494 (559)
|++++++++++++|..+|++++++ +.+++|+++++.++||+|||+||+||+++|+++|+|.|||+++|+|+|+|++++.
T Consensus 220 g~~~~~~l~~~~~g~~l~~~~~~~-p~~~~l~~~~~~i~rL~NDi~S~~kE~~~G~~~N~V~~~m~~~g~s~eeA~~~v~ 298 (382)
T 3kb9_A 220 AHWIWTDLLEPSSGCELPDAVRKH-PAYRRAALLSQEFAAWYNDLCSLPKEIAGDEVHNLGISLITHHSLTLEEAIGEVR 298 (382)
T ss_dssp THHHHHHHHHHHHTCCCCHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHSCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCCCHHHHhC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999999999999999998 8889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 008620 495 KQVSNAWKDINEEC 508 (559)
Q Consensus 495 ~~i~~~wk~ln~e~ 508 (559)
++|+++||++|+..
T Consensus 299 ~~i~~~~k~~~~~~ 312 (382)
T 3kb9_A 299 RRVEECITEFLAVE 312 (382)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999843
No 15
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=100.00 E-value=6.7e-33 Score=297.57 Aligned_cols=247 Identities=15% Similarity=0.123 Sum_probs=188.8
Q ss_pred HHHHH-HHHHHHHhCCCCCChhhHhhHHHHHHhhhccccCCCc-chhHH-HHHHHHHHhhhhhccc-cccC-CHHHH-HH
Q 008620 254 KELGD-ISRWWKELDFAHKLPFVRDRIAEVYFWAVGVHFEPQY-SFARK-LFTKVIYMTSIIDDIY-DVYG-KIEEL-DL 327 (559)
Q Consensus 254 ~El~~-lsrWwk~~~l~~~l~faRdr~ve~yf~~~~~~feP~~-s~~Rl-~~aK~~~l~~iiDD~y-D~~g-t~eEl-~~ 327 (559)
+|++. +..|..++++... +-.|+++..+-|-.++++..|.. +..|+ ..+|+++|+|++||.| |..| +.+.+ ..
T Consensus 129 ~ev~~~~~~W~~~~~~l~~-~~~~~~~~~~~~~llaa~~yP~A~~~e~L~l~ad~~~W~F~~DD~~~D~~g~s~~~~~~~ 207 (433)
T 3v1v_A 129 EEVSRRIKRWAEDEVQLYP-EEWEGQFDGFSVGRYMVGCHPDAPTVDHLMLATRLMVAENAVDDCYCEDHGGSPVGLGGR 207 (433)
T ss_dssp HHHHHHHHHHHHHTSCCCC-----CCSCHHHHHHHHHHHCTTCSSHHHHHHHHHHHHHHHHHHHHHTC----CCTTHHHH
T ss_pred HHHHHHHHHHHHHcCCCCC-HHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhHHH
Confidence 55554 4479999876432 33577777775545444445999 79999 9999999999999995 9755 33221 12
Q ss_pred HHH---HHhhhchhhhccCCh-----hHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 008620 328 FTS---AIERWDINAIDQLPE-----YMKLCYRALINVYSEVEKDLASQAKLYRLHYAKEAMKNQVKHYFFEAKWYHQNY 399 (559)
Q Consensus 328 ft~---ai~rWd~~~~~~lpe-----ymk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~ 399 (559)
+.. ++..... ..+.-|. .-..+-.+++++++++.... .+....+++++|++|+++|++||+|+.+|+
T Consensus 208 l~~a~~~~d~l~~-~~~g~p~~~~~~~~dp~~~al~d~~~~l~~~a----~~~q~~r~~~~~~~~~~a~l~EA~W~~~g~ 282 (433)
T 3v1v_A 208 LLLAHTAIDHFHS-TAEYTPTWQASLAADAPRRAYDSAMGYFVRAA----TPSQSDRYRHDMARLHLGYLAEGAWAQTGH 282 (433)
T ss_dssp HHHHHTTTSCCCC-CTTTHHHHHHHTTSSHHHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhhhc-ccCCCCccccccCCchHHHHHHHHHHHHHhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 222 1211110 0000000 01245788999999997552 334577999999999999999999999999
Q ss_pred CCCHHHHHHhhhhhcchhhHHHHHHHhcCCCCChhHHhhhcCchHHHHHHhHHhHhccCccchhhhhccC-CCcchhHHH
Q 008620 400 IPTVDEYMTVALISSGHPNLSAISFVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMASHKFEQSRG-HVASSVECY 478 (559)
Q Consensus 400 vPs~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~~G-~~~n~V~cy 478 (559)
+||+||||++|++| |+.++++++.+++|..+|++++++ +.+++|+++++.++||+|||+||+||+++| +++|+|.||
T Consensus 283 vPsleEYl~~R~~s-g~~p~~~l~e~~~g~~lp~~v~~~-p~~~~L~~~~~~i~rL~NDI~Sy~kE~~~gg~~~N~V~~~ 360 (433)
T 3v1v_A 283 VPEVWEYLAMRQFN-NFRPCPTITDTVGGYELPADLHAR-PDMQRVIALAGNATTIVNDLYSYTKELNSPGRHLNLPVVI 360 (433)
T ss_dssp CCCHHHHHHHHHHS-SSTTTGGGHHHHHTCCCCHHHHTS-HHHHHHHHHHHHHHHHHHHHHSHHHHTTSSSCCCCHHHHH
T ss_pred CCCHHHHHHHHHHH-hHHHHHHHHHHHcCCCCCHHHHhC-chHHHHHHHHHHHHHHhchHHHHHHHHhcCCCCCcHHHHH
Confidence 99999999999999 777777778899999999999998 778889999999999999999999999995 788999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 008620 479 INQYGATEEEAYSEFRKQVSNAWKDINEEC 508 (559)
Q Consensus 479 M~e~g~S~eeA~~~i~~~i~~~wk~ln~e~ 508 (559)
|+++|+|+|+|++++.++|+++++++.+..
T Consensus 361 mke~g~S~eeA~~~v~~~i~~~~~~F~~~~ 390 (433)
T 3v1v_A 361 AEREQLCERDAYLKAVEVHNELQHSFEAAA 390 (433)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999987644
No 16
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Probab=99.75 E-value=8.2e-18 Score=177.15 Aligned_cols=229 Identities=10% Similarity=-0.028 Sum_probs=169.2
Q ss_pred HHHHHHHHHhC------------CCCCChhhHhhHHHHHHhhhccccCCCcchhHH-HHHHHHHHhhhhhccccccCCHH
Q 008620 257 GDISRWWKELD------------FAHKLPFVRDRIAEVYFWAVGVHFEPQYSFARK-LFTKVIYMTSIIDDIYDVYGKIE 323 (559)
Q Consensus 257 ~~lsrWwk~~~------------l~~~l~faRdr~ve~yf~~~~~~feP~~s~~Rl-~~aK~~~l~~iiDD~yD~~gt~e 323 (559)
.+..+|..+.| +. .-|-..++++.+=.|.++..| |..+...+ .++++.+|+|++||++|..+ +
T Consensus 33 ~~~l~w~~~~~~~~~~~~~~~~~l~-~~~~~l~~~~~t~~~laar~Y-P~a~~e~l~liad~~~~~F~lDD~~d~~~--~ 108 (374)
T 1yyq_A 33 IENLHYAYNKAAHHFAQPRQQQLLK-VDPKRLQASLQTIVGMVVYSW-AKVSKECMADLSIHYTYTLVLDDSKDDPY--P 108 (374)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHSC-CCHHHHHHHHHHHHHHHHHHS-TTSCHHHHHHHHHHHHHHHHHTTCCSCSH--H
T ss_pred HHHHHHHHHhccchhcccccccccc-cCHHHHHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHHHhhcccccCcH--H
Confidence 34448888888 52 234455677777666555555 99999888 89999999999999999754 6
Q ss_pred HHHHHHHHHhhhchhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCH
Q 008620 324 ELDLFTSAIERWDINAIDQLPEYMKLCYRALINVYSEVEKDLASQAKLYRLHYAKEAMKNQVKHYFFEAKWYHQNYIPTV 403 (559)
Q Consensus 324 El~~ft~ai~rWd~~~~~~lpeymk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~vPs~ 403 (559)
++..|.+.+.+ ... |+ .++..++.+.+.++. ...++.+..++.++|.+|+.++..|+.. .+..|+.
T Consensus 109 ~l~~~~~~ll~--G~~----~~--~Pl~~al~dl~~rl~----~~~~p~~~~rf~~s~~~~~~a~~~Ea~n--~~~~p~~ 174 (374)
T 1yyq_A 109 TMVNYFDDLQA--GRE----QA--HPWWALVNEHFPNVL----RHFGPFCSLNLIRSTLDFFEGCWIEQYN--FGGFPGS 174 (374)
T ss_dssp HHTTHHHHHHH--TCC----CS--SHHHHHHHHHHHHHH----TTSCHHHHHHHHHHHHHHHHHHHHHTTC--CCCCTTC
T ss_pred HHHHHHHHHhc--CCC----CC--ChHHHHHHHHHHHHH----HhcCHHHHHHHHHHHHHHHHHHHHHHhc--cCCCCCH
Confidence 66667666643 211 11 145566666666664 3345567889999999999999999873 6778999
Q ss_pred HHHHHhhhhhcchhhHHHHHHHhcCCCCChhHHhhhcCchHHHHHHhHHhHhccCccchhhhhc-cCCCcchhHHHHhhc
Q 008620 404 DEYMTVALISSGHPNLSAISFVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMASHKFEQS-RGHVASSVECYINQY 482 (559)
Q Consensus 404 eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~-~G~~~n~V~cyM~e~ 482 (559)
++|...++.++|+.-.... +.++..+.++... .+.+..++.....++.|+|||.||.||.. .|+.+|+|.+++.++
T Consensus 175 ~~Y~~~rR~~sG~~E~~~~--~~~P~~~~~e~~~-~~~~~~~i~am~~~i~~~NDIlSf~KE~~~~Gd~~NlV~vl~~~~ 251 (374)
T 1yyq_A 175 HDYPQFLRRMNGLGHCVGA--SLWPKEQFNERSL-FLEITSAIAQMENWMVWVNDLMSFYKEFDDERDQISLVKNYVVSD 251 (374)
T ss_dssp TTHHHHHHHHHHCHHHHHH--TTCCTTTCCTTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCCCHHHHHHHHH
T ss_pred HHHHHHHHhhccHHHHHHH--hhccccccchhhc-chhHHHHHHHHHHHHHhhhhhhccchhhhccCCccchhhhehhcC
Confidence 9999998888887543322 2222222222212 13355677777789999999999999998 499999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Q 008620 483 GATEEEAYSEFRKQVSNAWKDINE 506 (559)
Q Consensus 483 g~S~eeA~~~i~~~i~~~wk~ln~ 506 (559)
|+|.++|++++..++..+..++-.
T Consensus 252 g~S~~eAl~~v~~~~~~~~~r~~~ 275 (374)
T 1yyq_A 252 EISLHEALEKLTQDTLHSSKQMVA 275 (374)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988888755
No 17
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=97.11 E-value=0.00012 Score=83.96 Aligned_cols=46 Identities=30% Similarity=0.416 Sum_probs=27.5
Q ss_pred CccCCCCCCCCCCCCcCCccccCCCchhhHHHHHHHH-HHHHHHHHhh
Q 008620 19 DSTRGSANFPPSIWGDHFFQYTCDSQETDDQNVKHLE-LKKEIRRMLK 65 (559)
Q Consensus 19 ~~~r~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~~~~-lk~~v~~~~~ 65 (559)
.+.||+|||+||+|+++||++.. ..+.++.+.++++ |+++||+|+.
T Consensus 22 ~~~Rrsany~Ps~W~~~~i~sl~-~~~~~~~~~~~~~~Lie~VK~~l~ 68 (817)
T 3sdr_A 22 GLIRRTANPHPNVWGYDLVHSLK-SPYIDSSYRERAEVLVSEIKAMLN 68 (817)
T ss_dssp -------------CHHHHHHTCC-CGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred CccCCCCCCCCCCCCCCeeeccC-CcccchhHHHHHHHHHHHHHHHhc
Confidence 34799999999999999999643 3345678899999 9999999987
No 18
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=87.49 E-value=20 Score=35.60 Aligned_cols=180 Identities=17% Similarity=0.130 Sum_probs=95.3
Q ss_pred hhHHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHhh-hchhhh--ccCChhHHHHHHHHHHHHHHHHHHHHhhcccch
Q 008620 297 FARKLFTKVIYMTSIIDDIYDVYGKIEELDLFTSAIER-WDINAI--DQLPEYMKLCYRALINVYSEVEKDLASQAKLYR 373 (559)
Q Consensus 297 ~~Rl~~aK~~~l~~iiDD~yD~~gt~eEl~~ft~ai~r-Wd~~~~--~~lpeymk~~~~al~~~~~ei~~~~~~~~~~~~ 373 (559)
..|-.+.-+-.|.-.+||+=|......+|+.+-+.+++ .+.... ...|. .++..++.+++.+.. -
T Consensus 38 ~~R~av~alYaf~R~~Ddi~D~~~~~~~L~~w~~~l~~~~~g~~~~~~~~~~--~pv~~al~~~~~~~~-------l--- 105 (293)
T 3acx_A 38 DQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDIQSIEKYPYEYHHFQSD--RRIMMALQHVAQHKN-------I--- 105 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGTSSTHHHHHHHHHHHHHHHCTTSCCCCSSC--HHHHHHHHHHHHHSC-------C---
T ss_pred HHHHHHHHHHHHHHHHhhHhccCCCHHHHHHHHHHHHHHhCCCCcccCCCCC--CHHHHHHHHHHHHhC-------C---
Confidence 45665555777778899999976654446555555543 111110 00022 356677776654331 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHhhhhhcchhhHHHHHHHhcCCCCChhHHhhhcCchHHHHHHhHHh
Q 008620 374 LHYAKEAMKNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPNLSAISFVGMGDIVTKESFEWLFSNPRSIRASCAVG 453 (559)
Q Consensus 374 ~~~~~~~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~ 453 (559)
-++.+.+++.++-. +......+|++|+......+.|+--.+++-.++... .++..+... .+-.+ --++
T Consensus 106 ---~~~~~~~li~g~~~---Dl~~~~~~t~~dL~~Yc~~vAg~VG~l~~~l~g~~~--~~~~~~~A~---~lG~A-lQlt 173 (293)
T 3acx_A 106 ---AFQSFYNLIDTVYK---DQHFTMFETDAELFGYCYGVAGTVGEVLTPILSDHE--THQTYDVAR---RLGES-LQLI 173 (293)
T ss_dssp ---CHHHHHHHHHHHHH---HTTCCCCSSHHHHHHHHHHHTHHHHHHHHHHHCSSC--CHHHHHHHH---HHHHH-HHHH
T ss_pred ---CHHHHHHHHHHHHH---HcCCCCCCCHHHHHHHHHHhhHHHHHHHHHHhCCCC--cHHHHHHHH---HHHHH-HHHH
Confidence 13445666666653 334456789999988888887766655555554321 133332211 11111 1133
Q ss_pred HhccCccchhhhhccCCC--cchhHHHHhhcCCCHHH---------HHHHHHHHHHHHHHHHHH
Q 008620 454 RLMNDMASHKFEQSRGHV--ASSVECYINQYGATEEE---------AYSEFRKQVSNAWKDINE 506 (559)
Q Consensus 454 RL~NDI~S~~kE~~~G~~--~n~V~cyM~e~g~S~ee---------A~~~i~~~i~~~wk~ln~ 506 (559)
-++-|+. ....+|-+ +. =.|.++|++.++ ..+-+..++..+..-+.+
T Consensus 174 NilRDv~---eD~~~gR~YLP~---d~l~~~gv~~e~l~~~~~~~~~~~~~~~l~~~A~~~~~~ 231 (293)
T 3acx_A 174 NILRDVG---EDFENERIYFSK---QRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFRD 231 (293)
T ss_dssp HHHHCHH---HHHHTTCCCSCH---HHHHHHTCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---HHHhCCcEEeCH---HHHHHcCCCHHHhcccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3445553 33445653 32 246778998776 223455666666655543
No 19
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=86.27 E-value=27 Score=34.63 Aligned_cols=156 Identities=16% Similarity=0.213 Sum_probs=81.0
Q ss_pred hHHHHHHHHHHhhhhhccccccC-C-HHHHHHHHHHHhhhchhhhccCChhHHHHHHHHHHHHHHHHHHHHhhcccchHH
Q 008620 298 ARKLFTKVIYMTSIIDDIYDVYG-K-IEELDLFTSAIERWDINAIDQLPEYMKLCYRALINVYSEVEKDLASQAKLYRLH 375 (559)
Q Consensus 298 ~Rl~~aK~~~l~~iiDD~yD~~g-t-~eEl~~ft~ai~rWd~~~~~~lpeymk~~~~al~~~~~ei~~~~~~~~~~~~~~ 375 (559)
.|-.+.-+-.|.=.+||+-|... . ...|+.+-+.+.+- ...-|. .+++.+|.+++.+.. = .
T Consensus 40 ~R~~~~alYaf~R~~Ddi~D~~~~~~~~~L~~~~~~l~~~----~~g~~~--~pv~~al~~~~~~~~-------l--~-- 102 (294)
T 4hd1_A 40 LRPHFYSVYAFCRGVDDLGDEFAGDRMAALDAYEEELRRA----FAGEAT--TPAFRALQFTIATCN-------L--P-- 102 (294)
T ss_dssp THHHHHHHHHHHHHHHHTSTTCCSCHHHHHHHHHHHHHHH----HHTCCC--SHHHHHHHHHHHHHT-------C--C--
T ss_pred HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHH----hcCCCC--CHHHHHHHHHHHHcC-------C--C--
Confidence 34434445666778899999654 2 23444444444331 111122 256777777665442 0 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHhhhhhcchhhHHHHHHHhcCCCCChhHHhhhcCchHHHHHHhHHhHh
Q 008620 376 YAKEAMKNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPNLSAISFVGMGDIVTKESFEWLFSNPRSIRASCAVGRL 455 (559)
Q Consensus 376 ~~~~~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL 455 (559)
++.+.+++.++..... ....+|++|+......+.|.--.+++-.+ |.. +++..... ..+- .+--++-+
T Consensus 103 --~~~~~~li~g~~~Dl~---~~~~~t~~dL~~Y~~~vAg~VG~m~~~i~--g~~-~~~~~~~A---~~lG-~AlQltNi 170 (294)
T 4hd1_A 103 --MEPFLRLIEANRRDQR---KHTYDTWEDLRDYCRYSADPVGRLVLGIF--GCL-DDERARLS---DATC-TALQVANH 170 (294)
T ss_dssp --SHHHHHHHHHHHHHHH---CSBCCSHHHHHHHHHHHTHHHHHHHHHHT--TCC-SHHHHHHH---HHHH-HHHHHHHH
T ss_pred --HHHHHHHHHHHHhccc---cCCCCCHHHHHHHHHhccchHHHHHHHHh--CCC-CHHHHHHH---HHHH-HHHHHHHH
Confidence 2334566677664433 34568998888887777765544444444 332 33333321 1111 11223444
Q ss_pred ccCccchhhhhccCCC--cchhHHHHhhcCCCHHH
Q 008620 456 MNDMASHKFEQSRGHV--ASSVECYINQYGATEEE 488 (559)
Q Consensus 456 ~NDI~S~~kE~~~G~~--~n~V~cyM~e~g~S~ee 488 (559)
+.|+. ....+|-+ +. -.|.++|+|.++
T Consensus 171 lRDv~---eD~~~gR~YlP~---~~l~~~gv~~~d 199 (294)
T 4hd1_A 171 MQDID---RDLALGRIYVPR---ADLEQFGATLDD 199 (294)
T ss_dssp HHTHH---HHHHTTCBCSCH---HHHHTTTCCHHH
T ss_pred HHhch---hhhccCceeCCH---HHHHHcCCCHHH
Confidence 45554 33455653 32 357788998775
No 20
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=83.69 E-value=5 Score=40.32 Aligned_cols=142 Identities=10% Similarity=0.035 Sum_probs=77.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHhhhhhcchhhHHHHHHHh-cCCCCChhHHhhhcCchHHHHHHh
Q 008620 372 YRLHYAKEAMKNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPNLSAISFVG-MGDIVTKESFEWLFSNPRSIRASC 450 (559)
Q Consensus 372 ~~~~~~~~~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~~~~~~~~~~-~g~~l~~ev~e~~~~~~~l~~~~~ 450 (559)
..+..+.++....+.+-..+..|... .||.++|+..-..-+|.-+..++..-+ ++ ..+++..+.+ ..+-+..+
T Consensus 127 ~~~~~~~~~~~~~~~GQ~~dl~~~~~--~~t~~~y~~~i~~KTg~L~~~a~~~ga~la-g~~~~~~~~l---~~~g~~lG 200 (295)
T 3ipi_A 127 KVIQDFGKAGMDMAEGEVLDLKLEDE--SFGENDYFKCIYKKTASLFAISASIGAYTG-GAEEELAERF---SHFGNALG 200 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHTHHHHHHHHHHHHHHT-TCCHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHccchHHHHccCC--CCCHHHHHHHHHhhhHHHHHHHHHHHHHHc-CCCHHHHHHH---HHHHHHHH
Confidence 35556677777888888888888644 489999998877666655433221111 12 2456555543 56677778
Q ss_pred HHhHhccCccchhhhh-----ccCCCcchhHHHHhhcCC--CHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCH-HHHHHH
Q 008620 451 AVGRLMNDMASHKFEQ-----SRGHVASSVECYINQYGA--TEEEAYSEFRKQVSNAWKDINEECLRPTVVPV-PLLIRI 522 (559)
Q Consensus 451 ~i~RL~NDI~S~~kE~-----~~G~~~n~V~cyM~e~g~--S~eeA~~~i~~~i~~~wk~ln~e~l~~~~~p~-~~~~~~ 522 (559)
...-+.||+..+.... ..|. .++..+|..+.+- ..+.|.+.+.+.++++.+.+. .+|. +-++..
T Consensus 201 laFQI~DDilD~~~~~~gkd~~~gk-~Tlp~l~al~~~~~~~le~a~~~a~~~~~~A~~~L~-------~lp~~~~~~~L 272 (295)
T 3ipi_A 201 TAYQIVDDILEFLEVVEGKESKFTS-ETLPHIYMKSTSKEEALKKSIDCVKLHVAAAKETLE-------TFRECPARDKL 272 (295)
T ss_dssp HHHHHHHHHHHHHHHHHC--------CCHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHHT-------TSCCSHHHHHH
T ss_pred HHHHHHHHHHHhcCCccCCCcccCc-ccHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHH-------hCCCchHHHHH
Confidence 8888999987775432 2333 3666677654421 145555555555555554443 2443 445555
Q ss_pred HHHhh
Q 008620 523 LNLTR 527 (559)
Q Consensus 523 ln~aR 527 (559)
.++++
T Consensus 273 ~~l~~ 277 (295)
T 3ipi_A 273 FQITD 277 (295)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 21
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=82.93 E-value=8.2 Score=39.87 Aligned_cols=86 Identities=15% Similarity=0.053 Sum_probs=60.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHhhhhhcchhhHHHHHH--HhcCCCCChhHHhhhcCchHHHHHH
Q 008620 372 YRLHYAKEAMKNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPNLSAISF--VGMGDIVTKESFEWLFSNPRSIRAS 449 (559)
Q Consensus 372 ~~~~~~~~~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~~~~~~~~--~~~g~~l~~ev~e~~~~~~~l~~~~ 449 (559)
..+..+.+++..++.+-..+..|.... ||.++|++.-..-+|..+..++.. ...| .+++..+.+ ..+-+..
T Consensus 160 ~~~~~~~~~~~~~~~GQ~ldl~~~~~~--~t~~~y~~~i~~KTg~L~~~a~~lga~lag--a~~~~~~~l---~~~g~~l 232 (360)
T 3lmd_A 160 DTVAHFAETFGELVTGQMRETVGPRDT--DPIEHYTNVIREKTGVLIASAGYLGAMHAG--AAPEHIDAL---KNFGAAV 232 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCTTS--CHHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCC--CCHHHHHHHHHhhhHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHH
Confidence 466778888999999999999997655 999999998776666554433222 1123 455555543 5667777
Q ss_pred hHHhHhccCccchhh
Q 008620 450 CAVGRLMNDMASHKF 464 (559)
Q Consensus 450 ~~i~RL~NDI~S~~k 464 (559)
+...-+.||+..+.-
T Consensus 233 G~aFQI~DDilD~~~ 247 (360)
T 3lmd_A 233 GMIFQIVDDIIDIFS 247 (360)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHccC
Confidence 888888899877643
No 22
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=74.88 E-value=49 Score=33.55 Aligned_cols=89 Identities=7% Similarity=-0.102 Sum_probs=60.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHhhhhhcchhhHHHHHHHh-cCCCCChhHHhhhcCchHHHHHH
Q 008620 371 LYRLHYAKEAMKNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPNLSAISFVG-MGDIVTKESFEWLFSNPRSIRAS 449 (559)
Q Consensus 371 ~~~~~~~~~~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~~~~~~~~~~-~g~~l~~ev~e~~~~~~~l~~~~ 449 (559)
...+..+.+.....+.+-..+..|.. +..||.++|+..-..-+|..+..++..-+ ++ ..+++..+.+ ..+-+..
T Consensus 132 ~~~~~~~~~~~~~~~~GQ~ldl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~la-g~~~~~~~~l---~~~g~~l 206 (334)
T 3rmg_A 132 YEIIRLVSSLGQKLAEGELLQLSNVS-NHSFSEEVYFDVIRKKTAALFAACAEAAALSV-QVGEEEVAFA---RLLGEYI 206 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCC-C--CCHHHHHHHHHHTHHHHHHHHHHHHHHHT-TCCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCHHHHHHHHcCChHHHHHHHHHHHHHHc-CCCHHHHHHH---HHHHHHH
Confidence 35677788889999999999988864 34589999999887766665433322211 12 2455555543 5677778
Q ss_pred hHHhHhccCccchhh
Q 008620 450 CAVGRLMNDMASHKF 464 (559)
Q Consensus 450 ~~i~RL~NDI~S~~k 464 (559)
+...-+.||+..+..
T Consensus 207 G~aFQi~DD~ld~~~ 221 (334)
T 3rmg_A 207 GICFQIKDDIFDYFD 221 (334)
T ss_dssp HHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHhccCCC
Confidence 888889999887763
No 23
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=74.15 E-value=47 Score=33.91 Aligned_cols=89 Identities=11% Similarity=-0.072 Sum_probs=59.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHhhhhhcchhhHHHHHHHh-cCCCCChhHHhhhcCchHHHHHH
Q 008620 371 LYRLHYAKEAMKNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPNLSAISFVG-MGDIVTKESFEWLFSNPRSIRAS 449 (559)
Q Consensus 371 ~~~~~~~~~~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~~~~~~~~~~-~g~~l~~ev~e~~~~~~~l~~~~ 449 (559)
...+..+.++....+.+-+.+..|.. +..||.++|+..-..-+|..+..++..-+ ++ ..+++..+.+ ..+-+..
T Consensus 150 ~~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~la-g~~~~~~~~l---~~~g~~l 224 (345)
T 3oyr_A 150 MKALEILARASRVIAEGEVLQLMRSH-DLNLSQAVYLEIIQAKTAELFAAASEAGAVSA-GVDVAKSEAL---RDYGLNL 224 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSS-CSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHT-TCCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCHHHHHHHHHcchHHHHHHHHHHHHHHc-CCCHHHHHHH---HHHHHHH
Confidence 35667788888889999998888854 34589999999877766665433322211 12 2456655543 5667788
Q ss_pred hHHhHhccCccchhh
Q 008620 450 CAVGRLMNDMASHKF 464 (559)
Q Consensus 450 ~~i~RL~NDI~S~~k 464 (559)
+...-+.||+..+.-
T Consensus 225 G~aFQi~DD~lD~~~ 239 (345)
T 3oyr_A 225 GLAFQLADDALDYGG 239 (345)
T ss_dssp HHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHhccC
Confidence 888889999887753
No 24
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=72.79 E-value=72 Score=32.40 Aligned_cols=88 Identities=14% Similarity=0.037 Sum_probs=58.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHhhhhhcchhhHHHHHHHh-cCCCCChhHHhhhcCchHHHHHH
Q 008620 371 LYRLHYAKEAMKNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPNLSAISFVG-MGDIVTKESFEWLFSNPRSIRAS 449 (559)
Q Consensus 371 ~~~~~~~~~~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~~~~~~~~~~-~g~~l~~ev~e~~~~~~~l~~~~ 449 (559)
...+..+.++....+.+-+.+..|.. +..||.++|+..-..-+|..+..++..-+ ++ ..+++..+.+ ..+-+..
T Consensus 138 ~~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~la-g~~~~~~~~l---~~~g~~l 212 (341)
T 3mzv_A 138 MRVMEILANASAVIAEGEVLQLTAAQ-NLATTEDIYLRVIRGKTAALFSAATEVGGIIG-GAPEDQVQAL---FDYGDAL 212 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-CTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHT-TCCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHHHHHHHHHc-CCCHHHHHHH---HHHHHHH
Confidence 35667778888889999999988864 34689999999877666655433222111 12 2455555443 5666777
Q ss_pred hHHhHhccCccchh
Q 008620 450 CAVGRLMNDMASHK 463 (559)
Q Consensus 450 ~~i~RL~NDI~S~~ 463 (559)
+...-+.||+..+.
T Consensus 213 G~aFQI~DD~ld~~ 226 (341)
T 3mzv_A 213 GIAFQIVDDLLDYG 226 (341)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhcc
Confidence 88888888887664
No 25
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=69.26 E-value=43 Score=33.17 Aligned_cols=121 Identities=7% Similarity=-0.066 Sum_probs=79.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHhhhhhcchhhHHHHHH--HhcCCCCChhHHhhhcCchHHHHHH
Q 008620 372 YRLHYAKEAMKNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPNLSAISF--VGMGDIVTKESFEWLFSNPRSIRAS 449 (559)
Q Consensus 372 ~~~~~~~~~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~~~~~~~~--~~~g~~l~~ev~e~~~~~~~l~~~~ 449 (559)
..+..+.++....+.+-..+..|......||.++|+..-..-+|..+..++.. ...| .+++ . ..++-...
T Consensus 134 ~~~~~l~~~~~~~~~GQ~ldl~~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag--~~~~---~---l~~~g~~l 205 (284)
T 2ftz_A 134 XIFEEFSETAYXLLLGEAMDVEFERRXMEVSQEMVERMYAFXTGALFAFCFSAPFILXG--XDHT---X---MXLLGEXF 205 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCCH---H---HHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHhccCcCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhC--CChh---H---HHHHHHHH
Confidence 35666777778899999999999765447899999998776666554332211 1123 2333 1 25566777
Q ss_pred hHHhHhccCccchhhhh-ccCC-----C--cchhHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008620 450 CAVGRLMNDMASHKFEQ-SRGH-----V--ASSVECYINQYGATEEEAYSEFRKQVSNAWKDINE 506 (559)
Q Consensus 450 ~~i~RL~NDI~S~~kE~-~~G~-----~--~n~V~cyM~e~g~S~eeA~~~i~~~i~~~wk~ln~ 506 (559)
+...-+.||+..+.-.. ..|+ . .+...+| ..|.|.+.+.+.++++.+.+..
T Consensus 206 G~aFQI~DD~lD~~~d~~~~GK~~g~Dl~K~T~p~l~------~l~~a~~~a~~~~~~A~~~L~~ 264 (284)
T 2ftz_A 206 GVAFQIYDDLXDILGSFEKVGKDLGKDTEXVTLVXXV------GIQXAREMADXYYEEVLXGIES 264 (284)
T ss_dssp HHHHHHHHHHHHHHHHCCCC-----------CHHHHH------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhcCCHHhhCCCcchhccccchHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 88888999998876432 2333 1 2333333 3688899999999999888765
No 26
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=67.37 E-value=40 Score=34.13 Aligned_cols=111 Identities=7% Similarity=0.005 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCCHHHHHHhhhhhcchhhHHHHHHHh--cCCCCChhHHhhhcCchHHHHHHhHHhHhccCc
Q 008620 382 KNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPNLSAISFVG--MGDIVTKESFEWLFSNPRSIRASCAVGRLMNDM 459 (559)
Q Consensus 382 ~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~~~~~~~~~~--~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI 459 (559)
...+.+-..+-.|... .||.++|+..-..-+|.-+..+ +..| ++...+++..+.+ .++-+..+...-+.||+
T Consensus 158 ~~m~~GQ~lDl~~~~~--~~t~~~y~~i~~~KTg~L~~~a-~~~Ga~lag~a~~~~~~~l---~~~g~~lGlAFQI~DDi 231 (324)
T 3ts7_A 158 AGMVGGQAIDLASVGK--KLDLPGLENMHIRKTGALIRAS-VRLACLARPGLPAEQFDRL---DHYAKCIGLAFQIQDDI 231 (324)
T ss_dssp TTHHHHHHHHHHTTTC--CCCHHHHHHHHHHHTHHHHHHH-HHHHHTTSTTCCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccCC--CCCHHHHHHHHHhhHHHHHHHH-HHHHHHHcCCCCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4567777777777643 7899999998655555444322 2222 2222456655543 56667777888888998
Q ss_pred cchhhh-----------hccCCCcchhHHHHhhcCCCHHHHHHHHHHHHHHHHHHHH
Q 008620 460 ASHKFE-----------QSRGHVASSVECYINQYGATEEEAYSEFRKQVSNAWKDIN 505 (559)
Q Consensus 460 ~S~~kE-----------~~~G~~~n~V~cyM~e~g~S~eeA~~~i~~~i~~~wk~ln 505 (559)
..+.-. ...|.. +++.+| ..|.|.+.+.+.++++...+.
T Consensus 232 LD~~~d~~~~GK~~g~Dl~egK~-T~p~l~------gle~a~~~a~~~~~~A~~~L~ 281 (324)
T 3ts7_A 232 LDEESDTQTLGKTRGKDRDHNKP-NYPALL------GLSGAKEKAEEMHEAALESLA 281 (324)
T ss_dssp HHHTCC---------------CC-CHHHHH------CHHHHHHHHHHHHHHHHHTTT
T ss_pred HhccCCHHHhCCCccchhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 776432 122322 555444 478888888888888875543
No 27
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=67.05 E-value=23 Score=35.43 Aligned_cols=111 Identities=10% Similarity=0.001 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHhhcCCCCCHHHHHHhhhhhcchhhHHHHHH--HhcCCCCChhHHhhhcCchHHHHHHhHHhHhccCc
Q 008620 382 KNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPNLSAISF--VGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDM 459 (559)
Q Consensus 382 ~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~~~~~~~~--~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI 459 (559)
...+.+-..+..|... .+|.++|+..-..-+|..+..++.. ...| .+++..+.+ .++-...+...-+.||+
T Consensus 148 ~~~~~GQ~~Dl~~~~~--~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag--~~~~~~~~l---~~~g~~lG~aFQI~DDi 220 (301)
T 1rtr_A 148 VGMVGGQMLDMQSEGQ--PIDLETLEMIHKTKTGALLTFAVMSAADIAN--VDDTTKEHL---ESYSYHLGMMFQIKDDL 220 (301)
T ss_dssp TTHHHHHHHHHHTTTS--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 5577777777777543 7899999998777666554332221 1123 466665543 56777888888999999
Q ss_pred cchhhhh-----------ccCCCcchhHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008620 460 ASHKFEQ-----------SRGHVASSVECYINQYGATEEEAYSEFRKQVSNAWKDINE 506 (559)
Q Consensus 460 ~S~~kE~-----------~~G~~~n~V~cyM~e~g~S~eeA~~~i~~~i~~~wk~ln~ 506 (559)
..+.-.. ..|. .+++.++. .+.|.+.+.+.++++.+.+..
T Consensus 221 lD~~~d~~~~GK~~g~Dl~~gK-~T~p~l~a------l~~a~~~a~~~~~~A~~~L~~ 271 (301)
T 1rtr_A 221 LDCYGDEAKLGKKVGSDLENNK-STYVSLLG------KDGAEDKLTYHRDAAVDELTQ 271 (301)
T ss_dssp HHHHHHHCC--------------CCHHHHHH------HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhcCCHHHhCCCcchHHHcCC-CcHHHHHH------HHHHHHHHHHHHHHHHHHHHh
Confidence 8775332 1222 24554443 578888888888888877654
No 28
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=65.92 E-value=34 Score=34.28 Aligned_cols=112 Identities=12% Similarity=0.014 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCCHHHHHHhhhhhcchhhHHHHHHHh-cCCCCChhHHhhhcCchHHHHHHhHHhHhccCcc
Q 008620 382 KNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPNLSAISFVG-MGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMA 460 (559)
Q Consensus 382 ~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~~~~~~~~~~-~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~ 460 (559)
..++.+-..+-.|.. ..||.++|...-..-+|..+..++..-+ ++ ..+++..+.+ .++-+..+...-+.||+.
T Consensus 156 ~~~~~GQ~lDl~~~~--~~~t~~~y~~i~~~KTg~L~~~~~~~ga~la-ga~~~~~~~l---~~~g~~lGlaFQI~DDil 229 (302)
T 3p8l_A 156 QGMVSGQMGDIEGEK--VSLTLEELAAVHEKKTGALIEFALIAGGVLA-NQTEEVIGLL---TQFAHHYGLAFQIRDDLL 229 (302)
T ss_dssp TTHHHHHHHHHHTTT--SCCCHHHHHHHHHHHTHHHHHHHHHHHHHHT-TCCHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccC--CCCCHHHHHHHHHcCcHHHHHHHHHHHHHHc-CCCHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 345667777777753 4789999999854444443332221111 12 2355555543 566777788888899987
Q ss_pred chhhh-----------hccCCCcchhHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008620 461 SHKFE-----------QSRGHVASSVECYINQYGATEEEAYSEFRKQVSNAWKDINE 506 (559)
Q Consensus 461 S~~kE-----------~~~G~~~n~V~cyM~e~g~S~eeA~~~i~~~i~~~wk~ln~ 506 (559)
.+.-. ...|.. ++..++ ..+.|.+.+.+.++++.+.++.
T Consensus 230 D~~~d~~~~GK~~g~Dl~egK~-T~p~l~------~l~~a~~~~~~~~~~A~~~L~~ 279 (302)
T 3p8l_A 230 DATSTEADLGKKVGRDEALNKS-TYPALL------GIAGAKDALTHQLAEGSAVLEK 279 (302)
T ss_dssp HTTC-----------------C-CHHHHH------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHhCCChhhHHhcCCC-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 76432 122222 444443 4789999999999999887765
No 29
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=64.96 E-value=21 Score=35.76 Aligned_cols=111 Identities=14% Similarity=0.003 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCCHHHHHHhhhhhcchhhHHHHH--HHhcCCCCChhHHhhhcCchHHHHHHhHHhHhccCc
Q 008620 382 KNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPNLSAIS--FVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDM 459 (559)
Q Consensus 382 ~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~~~~~~~--~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI 459 (559)
...+.+-..+..|...+..||.++|+..-..-+|..+..++. -...| .+++ . ..++-...+...-+.||+
T Consensus 147 ~~~~~GQ~lDl~~~~~~~~~~~~~y~~i~~~KTg~L~~~~~~~ga~lag--~~~~---~---l~~~g~~lG~aFQI~DDi 218 (297)
T 3m0g_A 147 EGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAG--ADRG---P---LTAYATALGLAFQIADDI 218 (297)
T ss_dssp TTHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCCH---H---HHHHHHHHHHHHHHHTTC
T ss_pred hHHHHhHHHHHHhhhcCCCCCHHHHHHHHccchHHHHHHHHHHHHHHcC--CCHH---H---HHHHHHHHHHHHHHHHHH
Confidence 457778888888876677899999999865555544332211 11123 2333 1 245667778888899999
Q ss_pred cchhhhh-ccCC-----C----cchhHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008620 460 ASHKFEQ-SRGH-----V----ASSVECYINQYGATEEEAYSEFRKQVSNAWKDINE 506 (559)
Q Consensus 460 ~S~~kE~-~~G~-----~----~n~V~cyM~e~g~S~eeA~~~i~~~i~~~wk~ln~ 506 (559)
..+.-.. ..|+ . .+++.++ ..+.|.+...+.++++...+..
T Consensus 219 lD~~~~~~~~GK~~g~Dl~~gK~T~p~l~------~l~~a~~~~~~~~~~A~~~L~~ 269 (297)
T 3m0g_A 219 LDVEGNEEAAGKRLGKDAEAHKATFVSLL------GLAGAKSRAADLVAEAEAALAP 269 (297)
T ss_dssp C---------------------CCHHHHH------CSSHHHHHHHHHHHHHHHHTGG
T ss_pred HhccCCHHHhCCCccchhhcCCccHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 8875432 1222 1 2444443 3577888888888888876653
No 30
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=63.98 E-value=66 Score=32.64 Aligned_cols=88 Identities=14% Similarity=-0.025 Sum_probs=56.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHhhhhhcchhhHHHHHHHh-cCCCCChhHHhhhcCchHHHHHHh
Q 008620 372 YRLHYAKEAMKNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPNLSAISFVG-MGDIVTKESFEWLFSNPRSIRASC 450 (559)
Q Consensus 372 ~~~~~~~~~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~~~~~~~~~~-~g~~l~~ev~e~~~~~~~l~~~~~ 450 (559)
.++..+.+.....+.+-..+..|... ..||.++|+..-..-+|..+..++..-+ ++ ..+++..+.+ .++-+..+
T Consensus 153 ~~~~~~~~~~~~~~~GQ~~dl~~~~~-~~~~~~~y~~~i~~KTa~L~~~~~~~ga~la-g~~~~~~~~l---~~~g~~lG 227 (348)
T 3apz_A 153 EVVALLATAVEHLVTGETMEITSSTE-QRYSMDYYMQKTYYKTASLISNSCKAVAVLT-GQTAEVAVLA---FEYGRNLG 227 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCHH-HHTCHHHHHHHHHHHHTHHHHHHHHHHHHTT-TCCHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHcchHHHHHHHHHHHHHHc-CcCHHHHHHH---HHHHHHHH
Confidence 46667778888888888877776532 3579999999866655555433222111 12 2355555443 55667778
Q ss_pred HHhHhccCccchhh
Q 008620 451 AVGRLMNDMASHKF 464 (559)
Q Consensus 451 ~i~RL~NDI~S~~k 464 (559)
...-+.||+..+.-
T Consensus 228 ~aFQi~DD~lD~~g 241 (348)
T 3apz_A 228 LAFQLIDDILDFTG 241 (348)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhccC
Confidence 88888899877753
No 31
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=63.84 E-value=47 Score=33.69 Aligned_cols=86 Identities=13% Similarity=0.030 Sum_probs=59.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHhhhhhcchhhHHHHHH--HhcCCCCChhHHhhhcCchHHHHHH
Q 008620 372 YRLHYAKEAMKNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPNLSAISF--VGMGDIVTKESFEWLFSNPRSIRAS 449 (559)
Q Consensus 372 ~~~~~~~~~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~~~~~~~~--~~~g~~l~~ev~e~~~~~~~l~~~~ 449 (559)
..+..+.++....+.+-..+..|.... ..|.++|+..-..-+|..+..++.. ...| .+++..+.+ .++-...
T Consensus 137 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~-~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~l---~~~g~~l 210 (342)
T 1wy0_A 137 RVLEVIVKASNELCEGQARDLEFEKKS-TVTIEEYMEMISGKTGALFEASAKVGGIIGT--DNEEYIKAL---SSWGRNV 210 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCS-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHC--CCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCC-CCCHHHHHHHHHHhhHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHH
Confidence 356667778888999999999997643 4599999998777666654433222 1123 456655543 6677788
Q ss_pred hHHhHhccCccchh
Q 008620 450 CAVGRLMNDMASHK 463 (559)
Q Consensus 450 ~~i~RL~NDI~S~~ 463 (559)
+...-+.||+..+.
T Consensus 211 G~aFQI~DD~lD~~ 224 (342)
T 1wy0_A 211 GIAFQIWDDVLDLI 224 (342)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc
Confidence 88888999997764
No 32
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=62.77 E-value=28 Score=34.93 Aligned_cols=112 Identities=11% Similarity=0.006 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHhhcCCCCCHHHHHHhhhhhcchhhHHHHHHHh--cCCCCChhHHhhhcCchHHHHHHhHHhHhccCc
Q 008620 382 KNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPNLSAISFVG--MGDIVTKESFEWLFSNPRSIRASCAVGRLMNDM 459 (559)
Q Consensus 382 ~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~~~~~~~~~~--~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI 459 (559)
...+.+-..+..|. +..||.++|+..-..-+|..+..+ +..| ++...+++..+. ..++-+..+...-+.||+
T Consensus 158 ~~~~~GQ~lDl~~~--~~~~s~~~y~~i~~~KTa~L~~~~-~~~ga~lag~~~~~~~~~---l~~~g~~lG~aFQI~DDi 231 (302)
T 3p8r_A 158 QGMCLGQALDLAAE--NRLISLEELETIHRNKTGALMRCA-IRLGALAAGEKGRAMLPH---LDRYAEAVGLAFQVQDDI 231 (302)
T ss_dssp TTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHTTTHHHHTTHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHcc--CCCCCHHHHHHHhccCcHHHHHHH-HHHHHHHcCCCCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 45677878888886 457899999998655555443322 2222 121123333333 355667777888888998
Q ss_pred cchhhhh-----------ccCCCcchhHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008620 460 ASHKFEQ-----------SRGHVASSVECYINQYGATEEEAYSEFRKQVSNAWKDINE 506 (559)
Q Consensus 460 ~S~~kE~-----------~~G~~~n~V~cyM~e~g~S~eeA~~~i~~~i~~~wk~ln~ 506 (559)
..+.-+. ..|. .+...+| ..+.|.+.+.+.++++.+.++.
T Consensus 232 lD~~~~~~~~GK~~g~Dl~egK-~T~p~l~------~l~~a~~~a~~~~~~A~~~L~~ 282 (302)
T 3p8r_A 232 LDIISDTETLGKPQGSDQELNK-STYPALL------GLEGAQQKAHTLLQEALLALEA 282 (302)
T ss_dssp HHHTTC---------------C-CCHHHHH------HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhccCCHHHhCCCcchHHhcCC-chHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 7764321 1222 2555444 3688888899989888877653
No 33
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=60.67 E-value=83 Score=31.80 Aligned_cols=103 Identities=10% Similarity=-0.005 Sum_probs=63.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHhhhhhcchhhHHHHHHHh--cCCCCChhHHhhhcCchHHHHHH
Q 008620 372 YRLHYAKEAMKNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPNLSAISFVG--MGDIVTKESFEWLFSNPRSIRAS 449 (559)
Q Consensus 372 ~~~~~~~~~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~~~~~~~~~~--~g~~l~~ev~e~~~~~~~l~~~~ 449 (559)
..+..+.+.....+.+-+.+..|.. +..||.++|+..-..-+|..+..+ +..| ++ ..+++..+.+ ..+-+..
T Consensus 143 ~~~~~~~~~~~~~~~Gq~~dl~~~~-~~~~~~~~yl~~i~~KTa~L~~~~-~~~ga~la-g~~~~~~~~l---~~~g~~l 216 (334)
T 3pko_A 143 SLIQNHIDAMHRILQGELHQMDLNY-REDITLDAYLNEIAGKTAELFALS-CYQGAQLA-GAPQSVIDRT---RDIGIAI 216 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTT-CTTCCHHHHHHHHHHTTHHHHHHH-HHHHHHHT-TCCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHH-HHHHHHHc-CCCHHHHHHH---HHHHHHH
Confidence 4566677788888888888887754 346899999987666555543322 2222 12 2356555543 5566667
Q ss_pred hHHhHhccCccchhh-----------hhccCCCcchhHHHHhh
Q 008620 450 CAVGRLMNDMASHKF-----------EQSRGHVASSVECYINQ 481 (559)
Q Consensus 450 ~~i~RL~NDI~S~~k-----------E~~~G~~~n~V~cyM~e 481 (559)
+...-+.||+..+.- ....|.. ++..+|..+
T Consensus 217 G~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~-Tlp~i~al~ 258 (334)
T 3pko_A 217 GCAYQMLDDILDYAGDPKRTQKPVLEDLRSGVY-SLPLLLSLS 258 (334)
T ss_dssp HHHHHHHHHHHHHCSCTTSCCHHHHHHHHTTCC-CHHHHHHGG
T ss_pred HHHHHHHHHHHhccCChhhcCCCCCCccccCch-hHHHHHHHH
Confidence 777778888766532 2334544 565566554
No 34
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=60.13 E-value=46 Score=34.11 Aligned_cols=89 Identities=11% Similarity=0.015 Sum_probs=58.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhh----------cCC-CCCHHHHHHhhhhhcchhhHHHHHHHhcCCCCChhHHhhhc
Q 008620 372 YRLHYAKEAMKNQVKHYFFEAKWYH----------QNY-IPTVDEYMTVALISSGHPNLSAISFVGMGDIVTKESFEWLF 440 (559)
Q Consensus 372 ~~~~~~~~~w~~~~~a~l~EAkW~~----------~g~-vPs~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~ev~e~~~ 440 (559)
..+..+.++....+.+-..+..|.. .+. .||.++|+..-..-+|..+..++..-++--..+++..+.+
T Consensus 132 ~~~~~~~~~~~~~~~GQ~ldl~~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l- 210 (358)
T 4dhd_A 132 LFAKEVAEVIKAIDEGERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAAKWGVLSVSDDRGLAEAA- 210 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccccccccccccCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHH-
Confidence 3566788888899999999999872 233 6799999998776666654332221111012455555443
Q ss_pred CchHHHHHHhHHhHhccCccchh
Q 008620 441 SNPRSIRASCAVGRLMNDMASHK 463 (559)
Q Consensus 441 ~~~~l~~~~~~i~RL~NDI~S~~ 463 (559)
..+-+..+...-+.||+..+.
T Consensus 211 --~~~g~~lG~aFQI~DD~lD~~ 231 (358)
T 4dhd_A 211 --WNFGMAAGVAFQIIDDVLDIY 231 (358)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHhc
Confidence 566677778888888887664
No 35
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=59.00 E-value=38 Score=33.93 Aligned_cols=110 Identities=9% Similarity=-0.023 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHhhhhhcchhhHHHHHHHh--cCCCCChhHHhhhcCchHHHHHHhHHhHhccCccc
Q 008620 384 QVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPNLSAISFVG--MGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMAS 461 (559)
Q Consensus 384 ~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~~~~~~~~~~--~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S 461 (559)
.+.+-..+..|... .||.++|+..-..-+|..+..+ +..| ++...+++..+.+ .++-+..+...-+.||+..
T Consensus 154 ~~~GQ~lDl~~~~~--~~s~~~y~~i~~~KTg~L~~~~-~~~ga~lag~~~~~~~~~l---~~~g~~lGlaFQI~DDilD 227 (304)
T 3lsn_A 154 MVGGQAIDLGSVGL--KLDQQALEYMHRHKTGALIEAS-VILGALASGRAEKGELKAL---QTYAQAIGLAFQVQDDILD 227 (304)
T ss_dssp HHHHHHHHHHTTTC--CCCHHHHHHHHHHHTHHHHHHH-HHHHHHHTTCCCHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HhHhHHHHHHccCC--CCCHHHHHHHHHhhhHHHHHHH-HHHHHHHcCCCCHHHHHHH---HHHHHHHHHHHHHHHHHHh
Confidence 66777777777643 4899999998654444443322 2222 2222255555543 5667778888889999987
Q ss_pred hhhhh-ccCC-----C----cchhHHHHhhcCCCHHHHHHHHHHHHHHHHHHHH
Q 008620 462 HKFEQ-SRGH-----V----ASSVECYINQYGATEEEAYSEFRKQVSNAWKDIN 505 (559)
Q Consensus 462 ~~kE~-~~G~-----~----~n~V~cyM~e~g~S~eeA~~~i~~~i~~~wk~ln 505 (559)
+.-+. ..|+ . .+++.+| ..+.|.+.+++.++++.+.++
T Consensus 228 ~~~~~~~~GK~~g~Dl~egK~T~p~l~------~l~~a~~~a~~~~~~A~~~L~ 275 (304)
T 3lsn_A 228 VESDTATLGKRQGADIARDKPTYPALL------GLAAAKEYALELRDQALHALR 275 (304)
T ss_dssp HHHHHHHC------------CCHHHHH------CHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCChHHhCCCcccHHhcCCccHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 75432 2222 1 2455444 478889999998888886654
No 36
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=58.33 E-value=41 Score=34.19 Aligned_cols=111 Identities=15% Similarity=0.076 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHhhcCCCCCHHHHHHhhhhhcchhhHHHHHH--HhcCCCCChhHHhhhcCchHHHHHHhHHhHhccCc
Q 008620 382 KNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPNLSAISF--VGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDM 459 (559)
Q Consensus 382 ~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~~~~~~~~--~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI 459 (559)
...+.+-..+..|... .+|.++|+..-..-+|..+..++.. ...| .+++..+.+ .++-+..+...-+.||+
T Consensus 192 ~~~~~GQ~lDl~~~~~--~~~~~~y~~i~~~KTa~L~~~a~~~Ga~lag--a~~~~~~~l---~~~g~~lGlAFQI~DDi 264 (335)
T 2h8o_A 192 GGMAGGQALDLAAEKK--APDEDGIITLQAMKTGALLRFACEAGAIIAG--SNQAERQRL---RLFGEKIGLSFQLADDL 264 (335)
T ss_dssp TSHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHHHHHHHHHhC--CCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 5567777778888654 7899999998877666554332211 1123 456655543 56677788888899998
Q ss_pred cchhhhh-----------ccCCCcchhHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008620 460 ASHKFEQ-----------SRGHVASSVECYINQYGATEEEAYSEFRKQVSNAWKDINE 506 (559)
Q Consensus 460 ~S~~kE~-----------~~G~~~n~V~cyM~e~g~S~eeA~~~i~~~i~~~wk~ln~ 506 (559)
..+.-.. ..|. .++..+| ..|.|.+.+.+.++++.+.+..
T Consensus 265 LD~~gd~~~~GK~~g~Dl~egK-~T~p~l~------~le~a~~~a~~~~~~A~~~L~~ 315 (335)
T 2h8o_A 265 LDLTADAATMGKATGKDAARGK-GTLVALR------GEAWAREKLQEQVAEASELLAP 315 (335)
T ss_dssp HHHC-----------------C-CCHHHHH------CHHHHHHHHHHHHHHHHHHTGG
T ss_pred HHhcCCHHHhCCCcchHHhcCC-ccHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 7764321 1222 2444443 3688889999999988877654
No 37
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=57.36 E-value=44 Score=33.75 Aligned_cols=111 Identities=13% Similarity=0.043 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHHhhhhhcchhhHHHHHHHh--cCCCCChhHHhhhcCchHHHHHHhHHhHhccCcc
Q 008620 383 NQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPNLSAISFVG--MGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMA 460 (559)
Q Consensus 383 ~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~~~~~~~~~~--~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~ 460 (559)
..+.+-..+..|. +..||.++|+..-..-+|.-+..+ +..| ++...+++..+.+ .++-+..+...-+.||+.
T Consensus 152 ~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a-~~~Ga~lag~a~~~~~~~l---~~~g~~lGlAFQI~DDiL 225 (317)
T 4f62_A 152 GMITGQMIDLSSE--NKNISLAELEQMHVHKTGALIKAS-VRMGALSTGQVKPEQLAKL---DAYAHAIGLAFQVQDDII 225 (317)
T ss_dssp THHHHHHHHHHTS--SSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHTTTCCCHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHhHHHHHhcc--CCCCCHHHHHHHHHhchHHHHHHH-HHHHHHHcCCCCHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 4667777777775 345899999998655555443322 2222 2222456555543 566777788888899987
Q ss_pred chhhhh-----------ccCCCcchhHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008620 461 SHKFEQ-----------SRGHVASSVECYINQYGATEEEAYSEFRKQVSNAWKDINE 506 (559)
Q Consensus 461 S~~kE~-----------~~G~~~n~V~cyM~e~g~S~eeA~~~i~~~i~~~wk~ln~ 506 (559)
.+.-+. ..|. .+++.+| ..|.|.+.+++.++++.+.+..
T Consensus 226 D~~gd~~~~GK~~g~Dl~egK-~T~p~l~------gle~a~~~a~~~~~~A~~~L~~ 275 (317)
T 4f62_A 226 DLTSDTETLGKTQFSDAEANK-ATYPKLL------GLDGAKALVVRLHEQAIAQISE 275 (317)
T ss_dssp HTC----------------CC-CCHHHHH------HHHHHHHHHHHHHHHHHHHHGG
T ss_pred hccCChHhhCCCcchHHhcCC-CcHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 764321 2222 2555554 3688899999999988877654
No 38
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=52.94 E-value=53 Score=33.03 Aligned_cols=113 Identities=11% Similarity=0.052 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHhhcCCCCCHHHHHHhhhhhcchhhHHHHHHHhcCCC-CChhHHhhhcCchHHHHHHhHHhHhccCcc
Q 008620 382 KNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPNLSAISFVGMGDI-VTKESFEWLFSNPRSIRASCAVGRLMNDMA 460 (559)
Q Consensus 382 ~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~~~~~~~~~~~g~~-l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~ 460 (559)
...+.+-..+..|... ..||.++|+..-..-+|.-+..++....++.. .+++..+.+ .++-+..+...-+.||+.
T Consensus 158 ~~m~~GQ~lDl~~~~~-~~~t~~~y~~i~~~KTg~L~~~a~~~a~lag~~a~~~~~~~l---~~~g~~lGlaFQI~DDil 233 (313)
T 3lom_A 158 SGMVSGQSLDLSELAK-SSVTEEQLREIHLLKTGKLILACFEMVLAAQHEVSEQIKSAL---RTYGKHIGLVFQMQDDYL 233 (313)
T ss_dssp TTHHHHHHHHHHTTTS-SCCCHHHHHHHHHHHTHHHHHHHHHHHHTTCSSCCHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccCC-CCCCHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCCHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3567777777777543 37899999998655445443333222222332 566666543 566777788888899987
Q ss_pred chhhhh-----------ccCCCcchhHHHHhhcCCCHHHHHHHHHHHHHHHHHHHH
Q 008620 461 SHKFEQ-----------SRGHVASSVECYINQYGATEEEAYSEFRKQVSNAWKDIN 505 (559)
Q Consensus 461 S~~kE~-----------~~G~~~n~V~cyM~e~g~S~eeA~~~i~~~i~~~wk~ln 505 (559)
.+.-+. ..|.. +.+.+| ..+.|.+.+.+.++++.+.+.
T Consensus 234 D~~gd~~~~GK~~g~Dl~~gK~-T~p~l~------~l~~a~~~a~~~~~~A~~~L~ 282 (313)
T 3lom_A 234 DLYAPTQILGKGRSSDQANQKT-TFATLF------NKQQLEEEIAVHYQIAMDSLR 282 (313)
T ss_dssp HHHCC---------------CC-CHHHHS------CHHHHHHHHHHHHHHHHHTTT
T ss_pred hccCCHHhhCCCCcchhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 764321 22222 444443 478899999998888876543
No 39
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=50.89 E-value=84 Score=31.51 Aligned_cols=111 Identities=6% Similarity=-0.082 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHHhhhhhcchhhHHHHHHHh-cCCCCChhHHhhhcCchHHHHHHhHHhHhccCccc
Q 008620 383 NQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPNLSAISFVG-MGDIVTKESFEWLFSNPRSIRASCAVGRLMNDMAS 461 (559)
Q Consensus 383 ~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~~~~~~~~~~-~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S 461 (559)
..+.+-..+..|. +..||.++|...-..-+|..+..++..-+ ++ ..+++..+.+ .++-+..+...-+.||+..
T Consensus 156 ~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a~~~ga~la-ga~~~~~~~l---~~~g~~lGlaFQI~DDiLD 229 (309)
T 3pde_A 156 GMVAGQAKDIQSE--HVNLPLSQLRVLHKEKTGALLHYAVQAGLILG-QAPEAQWPAY---LQFADAFGLAFQIYDDILD 229 (309)
T ss_dssp THHHHHHHHHHTT--TCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHT-TCCGGGHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHcc--CCCCCHHHHHHHHHhccHHHHHHHHHHHHHHc-CCCHHHHHHH---HHHHHHHHHHHHHHHHHHh
Confidence 4566666666765 34689999999865544444332221111 12 2355544433 5666777788888899877
Q ss_pred hhhh-----------hccCCCcchhHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008620 462 HKFE-----------QSRGHVASSVECYINQYGATEEEAYSEFRKQVSNAWKDINE 506 (559)
Q Consensus 462 ~~kE-----------~~~G~~~n~V~cyM~e~g~S~eeA~~~i~~~i~~~wk~ln~ 506 (559)
+.-. ...|.. +.+.+| ..+.|.+..+++++++.+.+..
T Consensus 230 ~~gd~~~~GK~~g~Dl~egK~-T~p~l~------al~~a~~~~~~~~~~a~~~l~~ 278 (309)
T 3pde_A 230 VVSSPAEMGKATQKDADEAKN-TYPGKL------GLIGANQALIDTIHSGQAALQG 278 (309)
T ss_dssp HHCC-----------CTTTSS-SHHHHH------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCHHHhCCCccchhhcCCc-cHHHHH------HHHHhHHHHHHHHHHHHHHHHH
Confidence 6432 222322 444443 3688888899999988877653
No 40
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=49.99 E-value=76 Score=32.04 Aligned_cols=112 Identities=8% Similarity=-0.006 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCCHHHHHHhhhhhcchhhHHHHHHHh--cCCCCChhHHhhhcCchHHHHHHhHHhHhccCc
Q 008620 382 KNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPNLSAISFVG--MGDIVTKESFEWLFSNPRSIRASCAVGRLMNDM 459 (559)
Q Consensus 382 ~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~~~~~~~~~~--~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI 459 (559)
...+.+-..+..|... ..||.++|+..-..-+|.-+..+ +..| ++ ..+++..+.+ .++-+..+...-+.||+
T Consensus 180 ~~m~~GQ~lDl~~~~~-~~~t~~~y~~i~~~KTa~L~~~a-~~~Ga~la-ga~~~~~~~l---~~~g~~lGlAFQI~DDi 253 (324)
T 3uca_A 180 DGMIGGQIVDIINEDK-EEISLKELDYMHLKKTGELIKAS-IMSGAVLA-EASEGDIKKL---EGFGYKLGLAFQIKDDI 253 (324)
T ss_dssp TTHHHHHHHHHHTSSC-SSCCHHHHHHHHHHHTHHHHHHH-HHHHHHHT-TCCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHcCCC-CCCCHHHHHHHHhcchHHHHHHH-HHHHHHHc-CCCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4567777878787543 36899999998544444433322 2222 12 2455555443 56667778888888998
Q ss_pred cchhhh-----------hccCCCcchhHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008620 460 ASHKFE-----------QSRGHVASSVECYINQYGATEEEAYSEFRKQVSNAWKDINE 506 (559)
Q Consensus 460 ~S~~kE-----------~~~G~~~n~V~cyM~e~g~S~eeA~~~i~~~i~~~wk~ln~ 506 (559)
..+.-. ...|.. +...+| ..+.|.+.+++.++++.+.+..
T Consensus 254 LD~~gd~~~~GK~~g~Dl~egK~-T~p~l~------al~~a~~~a~~~~~~A~~~L~~ 304 (324)
T 3uca_A 254 LDVVGNAKDLGKNVHKDQESNKN-NYITIF------GLEECKKKCVNITEECIEILSS 304 (324)
T ss_dssp HHHCCC------------------CHHHHH------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhccCCHHHhCCCcchHhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 776432 112222 444443 4689999999999999887754
No 41
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=47.83 E-value=49 Score=33.28 Aligned_cols=112 Identities=13% Similarity=0.157 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCHHHHHHhhhhhcchhhHHHHHH--HhcCCCCChhHH-hhhcCchHHHHHHhHHhHhcc
Q 008620 381 MKNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPNLSAISF--VGMGDIVTKESF-EWLFSNPRSIRASCAVGRLMN 457 (559)
Q Consensus 381 w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~~~~~~~~--~~~g~~l~~ev~-e~~~~~~~l~~~~~~i~RL~N 457 (559)
....+.+-..+..|. +..||.++|+..-..-+|..+..++.. ...| .+++.. +.+ ..+-+..+...-+.|
T Consensus 158 ~~~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a~~lga~lag--a~~~~~~~~l---~~~g~~lGlaFQI~D 230 (311)
T 3llw_A 158 IKGMILGQALDCYFE--NTPLNLEQLTFLHEHKTAKLISASLIMGLVASG--IKDEELFKWL---QAFGLKMGLCFQVLD 230 (311)
T ss_dssp TTTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHC--CCCHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHhc--CCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcC--CCHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 345667777777775 567899999988665555443322111 1113 344444 433 566777788888999
Q ss_pred Cccchhhh-hccCCCc-------chhHHHHhhcCCCHHHHHHHHHHHHHHHHHHHH
Q 008620 458 DMASHKFE-QSRGHVA-------SSVECYINQYGATEEEAYSEFRKQVSNAWKDIN 505 (559)
Q Consensus 458 DI~S~~kE-~~~G~~~-------n~V~cyM~e~g~S~eeA~~~i~~~i~~~wk~ln 505 (559)
|+..+.-+ ...|+.. +.+.++ ..+.|.+..+++++++.+.+.
T Consensus 231 DiLD~~gd~~~~GK~~g~~~gK~T~p~l~------~l~~a~~~~~~~~~~a~~~l~ 280 (311)
T 3llw_A 231 DIIDVTQDEEESGKTTHLDSAKNSFVNLL------GLERANNYAQTLKTEVLNDLD 280 (311)
T ss_dssp HHHHHHC-------------CCSCHHHHH------CHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhccCChHHHCcccccccCcchHHHHH------HHHHHHHHHHHHHHHHHHHhh
Confidence 99877543 2334432 222221 368888889999998887765
No 42
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=46.13 E-value=91 Score=31.79 Aligned_cols=86 Identities=12% Similarity=0.027 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHhhhhhcchhhHHHHHHHh-cCCCCChhHHhhhcCchHHHHHHhH
Q 008620 373 RLHYAKEAMKNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPNLSAISFVG-MGDIVTKESFEWLFSNPRSIRASCA 451 (559)
Q Consensus 373 ~~~~~~~~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~~~~~~~~~~-~g~~l~~ev~e~~~~~~~l~~~~~~ 451 (559)
.+..+.+....++.+-..+..|... .-||.++|+..-..-+|..+..++..-+ ++ ..+++..+.+ ..+-+..+.
T Consensus 144 ~~~~~~~~~~~l~~GQ~~dl~~~~~-~~~t~~~y~~~i~~KTa~L~~~~~~~ga~la-g~~~~~~~~l---~~~g~~lG~ 218 (352)
T 3nf2_A 144 ATRRLTKASRSLIDGQAQDISYEHR-DRVSVEECLEMEGNKTGALLACASSIGAVLG-GADERTADTL---EKYGYHLGL 218 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC-SCCCHHHHHHHHHHHTHHHHHHHHHHHHHHT-TCCHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHcccHHHHHHHHHHHHHHc-CCCHHHHHHH---HHHHHHHHH
Confidence 5567788888999999999998653 3689999999877766665443322211 12 2466655543 566777888
Q ss_pred HhHhccCccchh
Q 008620 452 VGRLMNDMASHK 463 (559)
Q Consensus 452 i~RL~NDI~S~~ 463 (559)
..-+.||+..+-
T Consensus 219 aFQi~DD~ld~~ 230 (352)
T 3nf2_A 219 AFQAVDDLLGIW 230 (352)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc
Confidence 888899987764
No 43
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=45.89 E-value=1.8e+02 Score=28.82 Aligned_cols=113 Identities=11% Similarity=0.060 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCHHHHHHhhhhhcchhhHHHHHHHh--cCCCCChhHHhhhcCchHHHHHHhHHhHhccC
Q 008620 381 MKNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPNLSAISFVG--MGDIVTKESFEWLFSNPRSIRASCAVGRLMND 458 (559)
Q Consensus 381 w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~~~~~~~~~~--~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~ND 458 (559)
....+.+-..+..|. +..||.++|...-..-+|..+..++ ..+ ++ ..+++..+.+ .++-+..+...-+.||
T Consensus 144 ~~~~~~GQ~lDl~~~--~~~~~~~~y~~i~~~KTg~L~~~a~-~~ga~la-ga~~~~~~~l---~~~g~~lGlaFQI~DD 216 (291)
T 3npk_A 144 LNGMVIGQAIDCFFE--DKRLSLNELEFLHTHKTARLIAAAL-KMGCEIC-ELNNEESNQI---YKLGLKLGLIFQINDD 216 (291)
T ss_dssp TTTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHHH-HHHHHHT-TCCHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc--CCCCCHHHHHHHHHcccHHHHHHHH-HHHHHHc-CCCHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 455666766677775 3468999999986555554443222 222 12 2455554443 5667777888888999
Q ss_pred ccchhhh-hccCCCc-------chhHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008620 459 MASHKFE-QSRGHVA-------SSVECYINQYGATEEEAYSEFRKQVSNAWKDINE 506 (559)
Q Consensus 459 I~S~~kE-~~~G~~~-------n~V~cyM~e~g~S~eeA~~~i~~~i~~~wk~ln~ 506 (559)
+..+.-. ...|+.. +.+.++ ..+.|.++.+++++++.+.++.
T Consensus 217 iLD~~gd~~~~GK~~~~d~gK~T~p~l~------~l~~a~~~~~~~~~~a~~~l~~ 266 (291)
T 3npk_A 217 IIDVTTSQEQSGKPTNNDIHKNSFVNLL------GLEQAIKTKENLLNECEQDLEK 266 (291)
T ss_dssp HHHHC----------------CCHHHHH------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhccCChHHHCCccchhcCcchHHHHH------HHHHhHHHHHHHHHHHHHHHHH
Confidence 8776543 2223321 333332 3678888888888888877653
No 44
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=44.51 E-value=92 Score=30.91 Aligned_cols=112 Identities=10% Similarity=0.035 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHhhcCCCCCHHHHHHhhhhhcchhhHHHHHHHh--c-CCCCChhHHhhhcCchHHHHHHhHHhHhccC
Q 008620 382 KNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPNLSAISFVG--M-GDIVTKESFEWLFSNPRSIRASCAVGRLMND 458 (559)
Q Consensus 382 ~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~~~~~~~~~~--~-g~~l~~ev~e~~~~~~~l~~~~~~i~RL~ND 458 (559)
...+.+-..+..|... .+|.++|+..-..-+|..+..+ +..| + + ..+++..+. ..++-+..+...-+.||
T Consensus 152 ~~~~~GQ~~dl~~~~~--~~~~~~y~~i~~~KTa~L~~~~-~~~ga~l~a-g~~~~~~~~---l~~~g~~lG~aFQi~DD 224 (299)
T 1rqj_A 152 AGMCGGQALDLDAEGK--HVPLDALERIHRHKTGALIRAA-VRLGALSAG-DKGRRALPV---LDKYAESIGLAFQVQDD 224 (299)
T ss_dssp TTHHHHHHHHHHTTTT--CCCHHHHHHHHHHHTHHHHHHH-HHHHHHTTT-HHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHhccCC--CCCHHHHHHHHHhhhHHHHHHH-HHHHHHHhC-CCCHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4567777778787643 7899999999766555543322 2222 1 1 134444443 35667778888889999
Q ss_pred ccchhhhh-ccCCC---------cchhHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008620 459 MASHKFEQ-SRGHV---------ASSVECYINQYGATEEEAYSEFRKQVSNAWKDINE 506 (559)
Q Consensus 459 I~S~~kE~-~~G~~---------~n~V~cyM~e~g~S~eeA~~~i~~~i~~~wk~ln~ 506 (559)
+..+.-.. ..|+. .+...+| ..+.|.+.+++.++++.+.+..
T Consensus 225 ~lD~~~~~~~~GK~~g~Dl~~gK~T~p~l~------~l~~a~~~~~~~~~~A~~~L~~ 276 (299)
T 1rqj_A 225 ILDVVGDTATLGKRQGADQQLGKSTYPALL------GLEQARKKARDLIDDARQSLKQ 276 (299)
T ss_dssp HHHHHSCHHHHSSCTTHHHHHTCCCHHHHH------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHhCCChhhHHHcCCCcHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 87775432 22321 2444443 2577888899999999887765
No 45
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=41.73 E-value=1.2e+02 Score=30.52 Aligned_cols=85 Identities=8% Similarity=0.082 Sum_probs=56.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH-hhcCCCCCHHHHHHhhhhhcchh-hHHHH--HHHhcCCCCChhHHhhhcCchHHHH
Q 008620 372 YRLHYAKEAMKNQVKHYFFEAKW-YHQNYIPTVDEYMTVALISSGHP-NLSAI--SFVGMGDIVTKESFEWLFSNPRSIR 447 (559)
Q Consensus 372 ~~~~~~~~~w~~~~~a~l~EAkW-~~~g~vPs~eEYl~~~~~S~g~~-~~~~~--~~~~~g~~l~~ev~e~~~~~~~l~~ 447 (559)
..+..+.+.....+.+-+.+..| ...+..||.++|+..-..-+|.. +..++ .-...|. +++.. ..++-.
T Consensus 130 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~~y~~~i~~KTa~Ls~~~~~~~ga~lag~--~~~~~-----l~~~g~ 202 (330)
T 1wmw_A 130 EVLLEFHEVVRRTAYGQHLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTAVAPLRLGALLAGK--TPPAA-----YEEGGL 202 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTC--CCCHH-----HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHccccHHHHHHHHHHHHHHcCC--CHHHH-----HHHHHH
Confidence 35667788889999999999999 65435689999999877655555 33221 2222232 33322 255667
Q ss_pred HHhHHhHhccCccchh
Q 008620 448 ASCAVGRLMNDMASHK 463 (559)
Q Consensus 448 ~~~~i~RL~NDI~S~~ 463 (559)
..+...-+.||+..+.
T Consensus 203 ~lG~aFQi~DD~ld~~ 218 (330)
T 1wmw_A 203 RLGTAFQIVDDVLNLE 218 (330)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHccCccc
Confidence 7777888888887764
No 46
>1pd3_A Nonstructural protein NS2; influenza virus A, NEP/NS2, unknown function; 2.60A {Influenza a virus} SCOP: a.30.3.1
Probab=37.39 E-value=21 Score=26.18 Aligned_cols=33 Identities=24% Similarity=0.438 Sum_probs=28.1
Q ss_pred HHHHH-HHHHHHHHhhhccCcccchhHHHHHHHh
Q 008620 51 VKHLE-LKKEIRRMLKAVNKTSHTLELIDAIQRL 83 (559)
Q Consensus 51 ~~~~~-lk~~v~~~~~~~~~~~~~l~lID~lqrL 83 (559)
-+++. |.++||.-|..+.+.++++-++.+||-|
T Consensus 15 FEeIRwlIeE~Rh~Lk~TensfeQItfmqalQLl 48 (58)
T 1pd3_A 15 FEEIRWLIEEVRHRLKITENSFEQITFMQALQLL 48 (58)
T ss_dssp HHHHHHHHHHHHHTCCCCTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Confidence 35677 9999999998888999999999998864
No 47
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=37.28 E-value=38 Score=33.65 Aligned_cols=109 Identities=10% Similarity=-0.035 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHhhcC-CCCCHHHHHHhhhhhcchhhHHHHH--HHhcCCCCChhHHhhhcCchHHHHHHhHHhHhccCc
Q 008620 383 NQVKHYFFEAKWYHQN-YIPTVDEYMTVALISSGHPNLSAIS--FVGMGDIVTKESFEWLFSNPRSIRASCAVGRLMNDM 459 (559)
Q Consensus 383 ~~~~a~l~EAkW~~~g-~vPs~eEYl~~~~~S~g~~~~~~~~--~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI 459 (559)
..+.+-..+..|...+ ..+|.++|+..-..-+|..+..++. -...| .+++..+.+ .++-...+...-+.||+
T Consensus 161 ~~~~GQ~~Dl~~~~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~ga~lag--~~~~~~~~l---~~~g~~lG~aFQI~DDi 235 (293)
T 2j1p_A 161 GLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGG--GSDEEIERL---RKFARCIGLLFQVVDDI 235 (293)
T ss_dssp THHHHHHHTTC---CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 3566666666664321 2468999998854444443322211 11123 466655543 56677788888899999
Q ss_pred cchhhhhccCCCcchhHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008620 460 ASHKFEQSRGHVASSVECYINQYGATEEEAYSEFRKQVSNAWKDINE 506 (559)
Q Consensus 460 ~S~~kE~~~G~~~n~V~cyM~e~g~S~eeA~~~i~~~i~~~wk~ln~ 506 (559)
..+..+. -.++..+| ..|.|.+.+.+.++++.+.+..
T Consensus 236 LD~~~~~----K~T~p~l~------gle~a~~~a~~~~~~A~~~L~~ 272 (293)
T 2j1p_A 236 LDVTKSS----KLTYPKLM------GLEKSREFAEKLNTEARDQLLG 272 (293)
T ss_dssp HHHHC------CCCHHHHH------HHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHccCCc----cccHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 8876443 23555444 4678888888888888766543
No 48
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=36.78 E-value=1.3e+02 Score=30.81 Aligned_cols=87 Identities=7% Similarity=0.018 Sum_probs=56.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCCH-HHHHHhhhhhcchh-hH--HHHHHHhcCCCCChhH--HhhhcCchHH
Q 008620 372 YRLHYAKEAMKNQVKHYFFEAKWYHQNYIPTV-DEYMTVALISSGHP-NL--SAISFVGMGDIVTKES--FEWLFSNPRS 445 (559)
Q Consensus 372 ~~~~~~~~~w~~~~~a~l~EAkW~~~g~vPs~-eEYl~~~~~S~g~~-~~--~~~~~~~~g~~l~~ev--~e~~~~~~~l 445 (559)
..+..+.++....+.+-+.+..|...+..+++ ++|+.+-..-+|.. +. +.+..+..|. +++. .+. ...+
T Consensus 168 ~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~y~~ii~~KTa~Lsf~~~~~lGa~lag~--~~~~~~~~~---l~~~ 242 (368)
T 2her_A 168 KIQKIYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEI--QVSSAQLNL---IEAI 242 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCC--CCCCSSTTT---HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHccchHHHHHHHHHHHHHHcCC--ChhHHHHHH---HHHH
Confidence 35667788888899999988888766634455 99998876655554 22 2222233342 3332 222 3566
Q ss_pred HHHHhHHhHhccCccchh
Q 008620 446 IRASCAVGRLMNDMASHK 463 (559)
Q Consensus 446 ~~~~~~i~RL~NDI~S~~ 463 (559)
-...+...-+.||+..+-
T Consensus 243 g~~lG~aFQI~DD~LD~~ 260 (368)
T 2her_A 243 LYKLGEFYQVHNDVSDYL 260 (368)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777788888888887764
No 49
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=36.51 E-value=1.8e+02 Score=29.80 Aligned_cols=88 Identities=9% Similarity=-0.073 Sum_probs=60.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCC----CCCHHHHHHhhhhhcchh-hHH--HHHHHhcCCCCChhHHhhhcCchH
Q 008620 372 YRLHYAKEAMKNQVKHYFFEAKWYHQNY----IPTVDEYMTVALISSGHP-NLS--AISFVGMGDIVTKESFEWLFSNPR 444 (559)
Q Consensus 372 ~~~~~~~~~w~~~~~a~l~EAkW~~~g~----vPs~eEYl~~~~~S~g~~-~~~--~~~~~~~g~~l~~ev~e~~~~~~~ 444 (559)
..+..+.+.....+.+-+.+..|...+. .+|+++|+..-..-+|.. +.. .+..+..| ..+++..+.+ .+
T Consensus 176 ~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~i~~~KTa~Lsf~~~~~~ga~lag-~a~~~~~~~l---~~ 251 (374)
T 2qis_A 176 NLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKSAFYSFYLPIAAAMYMAG-IDGEKEHANA---KK 251 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCTTCCCGGGCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTT-CCCHHHHHHH---HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccccccccccCCHHHHHHHHHcCccHHHHHHHHHHHHHHcC-CCcHHHHHHH---HH
Confidence 3566777888888999999999876544 389999999887766655 322 22222223 2456655543 66
Q ss_pred HHHHHhHHhHhccCccchh
Q 008620 445 SIRASCAVGRLMNDMASHK 463 (559)
Q Consensus 445 l~~~~~~i~RL~NDI~S~~ 463 (559)
+-...+...-+.||+..+.
T Consensus 252 ~g~~lG~aFQI~DDiLD~~ 270 (374)
T 2qis_A 252 ILLEMGEFFQIQDDYLDLF 270 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcc
Confidence 7778888888999987764
No 50
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=36.37 E-value=1.6e+02 Score=30.17 Aligned_cols=89 Identities=9% Similarity=-0.088 Sum_probs=60.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCC----CCCHHHHHHhhhhhcchh-hHH--HHHHHhcCCCCChhHHhhhcCchH
Q 008620 372 YRLHYAKEAMKNQVKHYFFEAKWYHQNY----IPTVDEYMTVALISSGHP-NLS--AISFVGMGDIVTKESFEWLFSNPR 444 (559)
Q Consensus 372 ~~~~~~~~~w~~~~~a~l~EAkW~~~g~----vPs~eEYl~~~~~S~g~~-~~~--~~~~~~~g~~l~~ev~e~~~~~~~ 444 (559)
..+..+.+.....+.+-+.+..|...+. .+|+++|+..-..-+|.. +.. .+..+..|. .+++..+.+ .+
T Consensus 169 ~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~ii~~KTa~Lsf~~~~~~ga~lag~-~~~~~~~~l---~~ 244 (367)
T 1uby_A 169 HLLELFLQTAYQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGI-DSKEEHENA---KA 244 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCTTSCCCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHHTC-CCHHHHHHH---HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccccCCHHHHHHHHHhCchHHHHHHHHHHHHHHcCC-ccHHHHHHH---HH
Confidence 4566677788888999999999976543 579999999877766654 322 222222231 355555543 56
Q ss_pred HHHHHhHHhHhccCccchhh
Q 008620 445 SIRASCAVGRLMNDMASHKF 464 (559)
Q Consensus 445 l~~~~~~i~RL~NDI~S~~k 464 (559)
+-...+...-+.||+..+.-
T Consensus 245 ~g~~lG~aFQI~DD~LD~~g 264 (367)
T 1uby_A 245 ILLEMGEYFQIQDDYLDCFG 264 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 67788888888999877643
No 51
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=34.98 E-value=1.9e+02 Score=28.69 Aligned_cols=85 Identities=13% Similarity=0.123 Sum_probs=58.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHhhhhhcchhhHHHHHHHh-cCCCCChhHHhhhcCchHHHHHH
Q 008620 371 LYRLHYAKEAMKNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPNLSAISFVG-MGDIVTKESFEWLFSNPRSIRAS 449 (559)
Q Consensus 371 ~~~~~~~~~~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~~~~~~~~~~-~g~~l~~ev~e~~~~~~~l~~~~ 449 (559)
+..+..+.+.+..++.+-..+..|......||.++|+..-..-+|..+..++..-+ ++. .++ ...++-+..
T Consensus 110 ~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~~a~-~~~-------~l~~~g~~l 181 (301)
T 2q80_A 110 PDAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSD-YKE-------DLKPLLNTL 181 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCS-------CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHCC-ChH-------HHHHHHHHH
Confidence 35566788888999999999999987666899999999887766654433322211 121 121 235667777
Q ss_pred hHHhHhccCccchh
Q 008620 450 CAVGRLMNDMASHK 463 (559)
Q Consensus 450 ~~i~RL~NDI~S~~ 463 (559)
+...-+.||+..+.
T Consensus 182 G~aFQi~DD~ld~~ 195 (301)
T 2q80_A 182 GLFFQIRDDYANLH 195 (301)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhc
Confidence 88888888887664
No 52
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=29.32 E-value=1e+02 Score=31.21 Aligned_cols=86 Identities=14% Similarity=0.089 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcC--CCCCHHHHHHhhhhhcchhhHHHHHHH--hcCCCCChhHHhhhcCchHHHHH
Q 008620 373 RLHYAKEAMKNQVKHYFFEAKWYHQN--YIPTVDEYMTVALISSGHPNLSAISFV--GMGDIVTKESFEWLFSNPRSIRA 448 (559)
Q Consensus 373 ~~~~~~~~w~~~~~a~l~EAkW~~~g--~vPs~eEYl~~~~~S~g~~~~~~~~~~--~~g~~l~~ev~e~~~~~~~l~~~ 448 (559)
.+..+.+....++.+-..+..|.... ..||.++|+..-..-+|..+..++..- ..|. +++ . .....+-+.
T Consensus 132 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~--~~~-~---~~l~~~g~~ 205 (340)
T 2e8v_A 132 LITIFNEELINLHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTLRLMEALSPS--SHH-G---HSLVPFINL 205 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHCCC------------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCC--cHH-H---HHHHHHHHH
Confidence 55567777888899999999998755 578999999988776665543332221 1222 221 2 334677888
Q ss_pred HhHHhHhccCccchhh
Q 008620 449 SCAVGRLMNDMASHKF 464 (559)
Q Consensus 449 ~~~i~RL~NDI~S~~k 464 (559)
.+...-+.||+..+.-
T Consensus 206 lG~aFQi~DD~ld~~~ 221 (340)
T 2e8v_A 206 LGIIYQIRDDYLNLKD 221 (340)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccC
Confidence 8889999999987643
No 53
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=29.15 E-value=2.5e+02 Score=27.66 Aligned_cols=84 Identities=12% Similarity=-0.024 Sum_probs=55.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHhhhhhcchhhHHHHHH--HhcCCCCChhHHhhhcCchHHHHH
Q 008620 371 LYRLHYAKEAMKNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPNLSAISF--VGMGDIVTKESFEWLFSNPRSIRA 448 (559)
Q Consensus 371 ~~~~~~~~~~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~~~~~~~~--~~~g~~l~~ev~e~~~~~~~l~~~ 448 (559)
...+..+.++....+.+-..+..|.... ||.++|+..-..-+|..+..++.. ...|. +++. ...+-..
T Consensus 126 ~~~~~~~~~~~~~~~~GQ~~dl~~~~~~--~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~--~~~~------l~~~g~~ 195 (299)
T 1v4e_A 126 NKLRRAFLNVIGKMSEAELIEQLSRYKP--ITKEEYLRIVEGKSGALFGLALQLPALLEGE--LGED------LYNLGVT 195 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSC--CCHHHHHHHHHHHTHHHHHHHHHHHHHHHTC--CCHH------HHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHccCCC--CCHHHHHHHHHhccHHHHHHHHHHHHHHcCC--CHHH------HHHHHHH
Confidence 3567778888899999999999997654 999999998777666554332211 12232 2222 2345566
Q ss_pred HhHHhHhccCccchhh
Q 008620 449 SCAVGRLMNDMASHKF 464 (559)
Q Consensus 449 ~~~i~RL~NDI~S~~k 464 (559)
.+...-+.||+..+.-
T Consensus 196 lG~aFQi~DD~lD~~~ 211 (299)
T 1v4e_A 196 IGTIYQMFDDIMDFAG 211 (299)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHccC
Confidence 6777777788766643
No 54
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=28.50 E-value=1.5e+02 Score=30.04 Aligned_cols=88 Identities=7% Similarity=-0.065 Sum_probs=57.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHh-----------hcCC----CCCHHHHHHhhhhhcchh-hHHH--HHHHhcCCCCCh
Q 008620 372 YRLHYAKEAMKNQVKHYFFEAKWY-----------HQNY----IPTVDEYMTVALISSGHP-NLSA--ISFVGMGDIVTK 433 (559)
Q Consensus 372 ~~~~~~~~~w~~~~~a~l~EAkW~-----------~~g~----vPs~eEYl~~~~~S~g~~-~~~~--~~~~~~g~~l~~ 433 (559)
..+..+.+.....+.+-..+..|. ..+. .+|.++|+..-..-+|.. +..+ +..+..| ..++
T Consensus 151 ~~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~KTa~Ls~~~~~~~ga~lag-~~~~ 229 (362)
T 1yhl_A 151 DLLCLFQKVDYATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSE-AAAS 229 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTBCGGGCCTTSCCCBCSSCTTCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTT-CGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccCCHHHHHHHHHhcCcHHHHHHHHHHHHHHcC-CCCH
Confidence 456677788888999999999887 3223 489999999887766655 3222 2222223 1244
Q ss_pred hHHhhhcCchHHHHHHhHHhHhccCccchh
Q 008620 434 ESFEWLFSNPRSIRASCAVGRLMNDMASHK 463 (559)
Q Consensus 434 ev~e~~~~~~~l~~~~~~i~RL~NDI~S~~ 463 (559)
+..+. ..++-...+...-+.||+..+.
T Consensus 230 ~~~~~---l~~~g~~lG~aFQi~DD~lD~~ 256 (362)
T 1yhl_A 230 VEMNL---VERVAHLIGEYFQVQDDVMDCF 256 (362)
T ss_dssp SCHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHhcc
Confidence 44433 2566777788888899987764
No 55
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=28.39 E-value=2.6e+02 Score=27.51 Aligned_cols=117 Identities=10% Similarity=-0.002 Sum_probs=69.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHhhhhhcchhhHHHHHHH-hcCCCCChhHHhhhcCchHHHHHHhH
Q 008620 373 RLHYAKEAMKNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPNLSAISFV-GMGDIVTKESFEWLFSNPRSIRASCA 451 (559)
Q Consensus 373 ~~~~~~~~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~~~~~~~~~-~~g~~l~~ev~e~~~~~~~l~~~~~~ 451 (559)
.+..+.++....+.+-..+..| .++|++.-..-+|..+..++..- .++ .+++..+.+ .++-+..+.
T Consensus 136 ~~~~~~~~~~~~~~GQ~~dl~~--------~~~y~~~i~~KTa~L~~~a~~~ga~la--~~~~~~~~l---~~~g~~lG~ 202 (289)
T 2azj_A 136 ALNTSIELWKDTSVGALRDMYD--------NSDYIRTIELKTGSLFKLSTVLSAYAS--KHYNTKQQM---LDVGKYLGI 202 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTT--------TSCHHHHHHHHTHHHHHHHHHHHHHHT--TCGGGHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--------HHHHHHHHHcchHHHHHHHHHHHHHHc--CCHHHHHHH---HHHHHHHHH
Confidence 4556667777777776655543 68899887766665543322211 124 455555443 556677788
Q ss_pred HhHhccCccchhhh----hccCCCcchhHHHHhhcCCCHHHH-HHHHHHHHHHHHHHHHH
Q 008620 452 VGRLMNDMASHKFE----QSRGHVASSVECYINQYGATEEEA-YSEFRKQVSNAWKDINE 506 (559)
Q Consensus 452 i~RL~NDI~S~~kE----~~~G~~~n~V~cyM~e~g~S~eeA-~~~i~~~i~~~wk~ln~ 506 (559)
..-+.||+..+.-+ ...|. .++..+| .+. +.++| ...+.+.++++.+.+..
T Consensus 203 aFQi~DDilD~~~~~K~dl~~gk-~Tlp~l~-~~~--g~~~a~~~~a~~~~~~A~~~L~~ 258 (289)
T 2azj_A 203 IYQVIDDFVDYKTKKVEEIDGSA-KQLFKYY-REG--KLEEYVRSVYLEYKQKYDELISN 258 (289)
T ss_dssp HHHHHHHHHHHTTSCTTTCCTTG-GGGHHHH-TTT--CHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhhhhcCCCChhhhcCc-ccHHHHH-HcC--CHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888988776432 22232 3666666 322 46777 44567777777766543
No 56
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=28.10 E-value=1.4e+02 Score=29.88 Aligned_cols=89 Identities=6% Similarity=-0.061 Sum_probs=60.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHhhhhhcchhhHHHHHHHhcCCCCChhHHhhhcCchHHHHHHhH
Q 008620 372 YRLHYAKEAMKNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPNLSAISFVGMGDIVTKESFEWLFSNPRSIRASCA 451 (559)
Q Consensus 372 ~~~~~~~~~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~ 451 (559)
..+..+.++....+.+-..+..|... ..||.++|+..-..-+|..+..++..-++--..+++..+.+ .++-...+.
T Consensus 130 ~~~~~~~~~~~~~~~GQ~~dl~~~~~-~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l---~~~g~~lG~ 205 (325)
T 3aqb_B 130 KFHQIFSKTILEVCFGEFDQMADRFN-YPVSFTAYLRRINRKTAILIEASCHLGALSSQLDEQSTYHI---KQFGHCIGM 205 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTC-CCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHH---HHHHHHHHH
Confidence 46667778888899999999988653 35899999998877666664433222211112456655543 567777888
Q ss_pred HhHhccCccchhh
Q 008620 452 VGRLMNDMASHKF 464 (559)
Q Consensus 452 i~RL~NDI~S~~k 464 (559)
..-+.||+..+.-
T Consensus 206 afQi~DD~ld~~~ 218 (325)
T 3aqb_B 206 SYQIIDDILDYTS 218 (325)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHhccC
Confidence 8888999877643
No 57
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=25.94 E-value=75 Score=31.21 Aligned_cols=70 Identities=11% Similarity=-0.002 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHhhhhhcchhhHHHHHHHh-cCCCCChhHHhhhcCchHHHHHHhHHhHhccCc
Q 008620 384 QVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPNLSAISFVG-MGDIVTKESFEWLFSNPRSIRASCAVGRLMNDM 459 (559)
Q Consensus 384 ~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~~~~~~~~~~-~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI 459 (559)
.+.+-..+..|..+ .||+++|+..-..-+|..+..++..-+ ++ ..+++..+.+ .++-+..+...-+.||+
T Consensus 151 ~~~GQ~lDl~~~~~--~~t~~~y~~~i~~KTa~L~~~a~~lGaila-ga~~~~~~~l---~~~G~~lG~aFQI~DD~ 221 (274)
T 3kra_B 151 MISGLHREEEIVDG--NTSLDFIEYVCKKKYGEMHACGAACGAILG-GAAEEEIQKL---RNFGLYQGTLRGMMEMK 221 (274)
T ss_dssp HHHHHHHHTTCCTT--SSCHHHHHHHHHHHTHHHHHHHHHHHHHHT-TCCHHHHHHH---HHHHHHHHHHHHHHHHT
T ss_pred HHHhHHHHHhccCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHH---HHHHHHHHHHHHHHHhh
Confidence 45666666666533 789999998755555544433222111 12 2456655543 56677778888888987
No 58
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=22.12 E-value=5.8e+02 Score=25.23 Aligned_cols=83 Identities=5% Similarity=-0.087 Sum_probs=54.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHhhhhhcchhhHHHHHH--HhcCCCCChhHHhhhcCchHHHHHH
Q 008620 372 YRLHYAKEAMKNQVKHYFFEAKWYHQNYIPTVDEYMTVALISSGHPNLSAISF--VGMGDIVTKESFEWLFSNPRSIRAS 449 (559)
Q Consensus 372 ~~~~~~~~~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~~~~~~~~--~~~g~~l~~ev~e~~~~~~~l~~~~ 449 (559)
..+..+.+.....+.+-..+..|.. +..||.++|+..-..-+|..+..++.. ...|.. . +. ...+-+..
T Consensus 122 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~--~---~~---l~~~g~~l 192 (315)
T 3tc1_A 122 LIAQALSNAVLRLSRGEIEDVFVGE-CFNSDKQKYWRILEDKTAHFIEASLKSMAILLNKD--A---KI---YADFGLNF 192 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-SCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSC--H---HH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCC--H---HH---HHHHHHHH
Confidence 4566677888889999999999865 346899999987666555554332211 122332 2 21 24566777
Q ss_pred hHHhHhccCccchh
Q 008620 450 CAVGRLMNDMASHK 463 (559)
Q Consensus 450 ~~i~RL~NDI~S~~ 463 (559)
+...-+.||+..+.
T Consensus 193 G~aFQI~DD~ld~~ 206 (315)
T 3tc1_A 193 GMAFQIIDDLLDIT 206 (315)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhccc
Confidence 77888888887663
No 59
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=22.10 E-value=32 Score=39.14 Aligned_cols=40 Identities=30% Similarity=0.664 Sum_probs=14.4
Q ss_pred CCCCCCCCcCCccccCCCchhhHHHHHHHH-HHHHHHHHhh
Q 008620 26 NFPPSIWGDHFFQYTCDSQETDDQNVKHLE-LKKEIRRMLK 65 (559)
Q Consensus 26 ~~~ps~W~~~fl~~~~~~~~~~~~~~~~~~-lk~~v~~~~~ 65 (559)
+|+|++|+++++.....+........++++ |++++|+|+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 45 (785)
T 3s9v_A 5 EFPPGFWKDDLIDSLTSSHKVAASDEKRIETLISEIKNMFR 45 (785)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHHHH
T ss_pred cCCcccCcccccccCCCccccCcchhHHHHHHHHHHHHHhh
Confidence 689999999999853222111223567888 9999999985
No 60
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=21.80 E-value=70 Score=25.15 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=20.3
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHH
Q 008620 482 YGATEEEAYSEFRKQVSNAWKDI 504 (559)
Q Consensus 482 ~g~S~eeA~~~i~~~i~~~wk~l 504 (559)
||++.+||+..+.+.+++++...
T Consensus 6 HGl~v~eA~~~l~~~l~~~~~~~ 28 (82)
T 3fau_A 6 HGLHVDEALEHLMRVLEKKTEEF 28 (82)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHh
Confidence 79999999999999999888643
Done!