Query 008621
Match_columns 559
No_of_seqs 324 out of 2161
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 07:49:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008621.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008621hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cdq_A Aspartokinase; aspartat 100.0 3.1E-95 1E-99 794.2 48.1 495 59-557 6-502 (510)
2 3tvi_A Aspartokinase; structur 100.0 7E-87 2.4E-91 717.5 40.4 427 80-542 2-441 (446)
3 2j0w_A Lysine-sensitive aspart 100.0 1.3E-86 4.6E-91 717.9 36.8 444 79-540 1-449 (449)
4 3c1m_A Probable aspartokinase; 100.0 7.3E-85 2.5E-89 710.0 49.5 446 81-541 1-470 (473)
5 3l76_A Aspartokinase; alloster 100.0 1.2E-72 4E-77 628.8 39.4 395 80-541 1-419 (600)
6 3ab4_A Aspartokinase; aspartat 100.0 9.8E-72 3.4E-76 599.1 42.7 394 80-541 1-408 (421)
7 2j4j_A Uridylate kinase; trans 100.0 1.6E-30 5.5E-35 256.5 17.6 205 81-377 1-225 (226)
8 1ybd_A Uridylate kinase; alpha 100.0 4.1E-30 1.4E-34 255.5 19.3 215 80-377 7-239 (239)
9 2a1f_A Uridylate kinase; PYRH, 100.0 6E-30 2.1E-34 255.8 19.7 216 80-378 8-241 (247)
10 2jjx_A Uridylate kinase, UMP k 100.0 8.8E-30 3E-34 255.8 20.9 217 79-378 11-247 (255)
11 1gs5_A Acetylglutamate kinase; 100.0 1.3E-29 4.3E-34 255.0 21.6 234 80-376 2-257 (258)
12 2ap9_A NAG kinase, acetylgluta 100.0 4.4E-29 1.5E-33 256.3 21.2 240 80-379 25-292 (299)
13 4a7w_A Uridylate kinase; trans 100.0 9.5E-29 3.3E-33 246.1 21.1 213 80-375 7-239 (240)
14 1z9d_A Uridylate kinase, UK, U 100.0 1.1E-28 3.8E-33 247.3 21.3 218 80-379 7-242 (252)
15 3ek6_A Uridylate kinase; UMPK 100.0 3.9E-28 1.3E-32 242.1 18.8 215 80-377 9-241 (243)
16 2j5v_A Glutamate 5-kinase; pro 100.0 2.7E-28 9.4E-33 256.6 17.0 228 80-379 4-259 (367)
17 3nwy_A Uridylate kinase; allos 100.0 6.6E-28 2.2E-32 244.5 17.6 215 80-376 50-280 (281)
18 2brx_A Uridylate kinase; UMP k 99.9 1.2E-27 4.2E-32 238.7 16.6 207 80-377 19-244 (244)
19 2ogx_A Molybdenum storage prot 99.9 2.1E-27 7.1E-32 241.1 17.3 216 82-378 41-272 (276)
20 2ij9_A Uridylate kinase; struc 99.9 4.5E-27 1.5E-31 230.6 18.3 202 81-376 1-219 (219)
21 2va1_A Uridylate kinase; UMPK, 99.9 1E-26 3.5E-31 233.6 20.7 215 80-376 24-255 (256)
22 2rd5_A Acetylglutamate kinase- 99.9 4.2E-27 1.4E-31 241.4 16.4 238 80-377 36-298 (298)
23 2bty_A Acetylglutamate kinase; 99.9 7.6E-27 2.6E-31 237.7 16.5 235 80-378 21-280 (282)
24 2egx_A Putative acetylglutamat 99.9 5.1E-26 1.8E-30 230.1 19.6 236 82-376 1-269 (269)
25 2ako_A Glutamate 5-kinase; str 99.9 1.1E-26 3.7E-31 232.6 14.0 215 81-368 2-232 (251)
26 2v5h_A Acetylglutamate kinase; 99.9 5.2E-26 1.8E-30 235.5 16.6 238 80-378 49-311 (321)
27 3mah_A Aspartokinase; aspartat 99.9 4.2E-26 1.4E-30 212.6 14.3 148 381-541 4-152 (157)
28 2ogx_B Molybdenum storage prot 99.9 2.5E-25 8.6E-30 225.2 20.9 216 82-377 38-269 (270)
29 3ll9_A Isopentenyl phosphate k 99.9 1.9E-25 6.4E-30 225.9 19.5 159 203-376 89-266 (269)
30 3d40_A FOMA protein; fosfomyci 99.9 2.3E-26 7.8E-31 234.6 12.4 222 80-375 23-265 (286)
31 4go7_X Aspartokinase; transfer 99.9 1.3E-25 4.3E-30 216.7 16.9 166 370-545 10-183 (200)
32 3l86_A Acetylglutamate kinase; 99.9 1.3E-25 4.4E-30 227.6 14.2 233 75-377 31-278 (279)
33 2buf_A Acetylglutamate kinase; 99.9 7.4E-25 2.5E-29 225.0 19.6 235 80-378 26-297 (300)
34 1e19_A Carbamate kinase-like c 99.9 4.4E-25 1.5E-29 227.9 13.4 239 79-377 1-314 (314)
35 3s1t_A Aspartokinase; ACT doma 99.9 3.1E-23 1.1E-27 197.7 17.5 152 382-543 3-162 (181)
36 3ll5_A Gamma-glutamyl kinase r 99.9 2.6E-23 9E-28 207.9 17.1 224 79-375 2-248 (249)
37 2dt9_A Aspartokinase; protein- 99.9 1.1E-22 3.7E-27 191.4 16.6 148 384-542 5-160 (167)
38 2re1_A Aspartokinase, alpha an 99.9 1.8E-21 6E-26 183.1 15.5 149 382-540 12-166 (167)
39 2dtj_A Aspartokinase; protein- 99.9 2.1E-21 7.2E-26 184.6 15.7 146 383-541 3-159 (178)
40 3d2m_A Putative acetylglutamat 99.9 2.7E-21 9.4E-26 209.3 17.0 234 80-378 43-304 (456)
41 3zzh_A Acetylglutamate kinase; 99.9 1.2E-21 4.1E-26 200.8 12.7 233 79-379 47-303 (307)
42 2we5_A Carbamate kinase 1; arg 99.9 5.2E-21 1.8E-25 197.2 16.2 115 257-376 178-309 (310)
43 2e9y_A Carbamate kinase; trans 99.8 6.9E-21 2.4E-25 196.7 14.7 235 79-377 3-315 (316)
44 4ab7_A Protein Arg5,6, mitocho 99.8 8.8E-21 3E-25 203.9 12.9 232 79-378 47-302 (464)
45 3s6g_A N-acetylglutamate kinas 99.8 1.3E-20 4.5E-25 202.8 13.3 236 78-378 56-311 (460)
46 3k4o_A Isopentenyl phosphate k 99.8 2.8E-20 9.7E-25 187.6 14.9 151 203-378 98-265 (266)
47 3l76_A Aspartokinase; alloster 99.8 1.5E-19 5E-24 201.5 18.5 148 382-542 431-592 (600)
48 3s6k_A Acetylglutamate kinase; 99.8 5.7E-20 1.9E-24 198.1 0.2 235 78-378 59-314 (467)
49 4axs_A Carbamate kinase; oxido 99.7 1.7E-15 5.8E-20 156.6 17.1 117 255-376 197-331 (332)
50 3kzf_A Carbamate kinase; argin 99.6 8.4E-15 2.9E-19 149.4 16.0 122 254-377 181-316 (317)
51 2f06_A Conserved hypothetical 99.1 1.4E-09 4.8E-14 98.9 15.7 113 405-537 13-131 (144)
52 2dtj_A Aspartokinase; protein- 98.6 2.1E-07 7.3E-12 87.8 12.5 103 343-445 27-145 (178)
53 3c1m_A Probable aspartokinase; 98.3 7.7E-07 2.6E-11 96.5 9.0 112 411-539 268-382 (473)
54 4go7_X Aspartokinase; transfer 98.3 2E-06 6.8E-11 82.6 9.0 60 386-445 106-165 (200)
55 2dt9_A Aspartokinase; protein- 98.3 1.2E-06 4.2E-11 81.6 7.1 69 467-536 7-80 (167)
56 2re1_A Aspartokinase, alpha an 98.2 4.9E-06 1.7E-10 77.5 9.8 102 343-445 37-153 (167)
57 3mah_A Aspartokinase; aspartat 98.1 3.9E-06 1.3E-10 77.4 6.1 68 467-536 9-78 (157)
58 3s1t_A Aspartokinase; ACT doma 98.0 9.8E-06 3.4E-10 76.6 8.5 103 343-445 28-146 (181)
59 3tvi_A Aspartokinase; structur 97.5 0.00019 6.5E-09 77.0 9.0 102 342-445 311-426 (446)
60 3ab4_A Aspartokinase; aspartat 97.4 0.00024 8.1E-09 75.8 8.4 101 344-445 277-394 (421)
61 2cdq_A Aspartokinase; aspartat 97.0 0.0013 4.6E-08 71.6 8.7 108 413-539 293-409 (510)
62 2j0w_A Lysine-sensitive aspart 96.3 0.0025 8.6E-08 68.4 4.9 58 386-445 377-436 (449)
63 1u8s_A Glycine cleavage system 96.3 0.14 4.9E-06 47.9 16.3 110 395-512 6-127 (192)
64 2nyi_A Unknown protein; protei 94.8 0.49 1.7E-05 44.5 14.1 108 395-513 5-128 (195)
65 1zhv_A Hypothetical protein AT 94.2 0.095 3.2E-06 46.7 7.0 89 427-539 34-123 (134)
66 1zvp_A Hypothetical protein VC 94.1 0.14 4.6E-06 45.6 7.8 86 427-535 42-128 (133)
67 2f06_A Conserved hypothetical 93.9 0.14 4.6E-06 45.6 7.4 46 399-444 73-120 (144)
68 3p96_A Phosphoserine phosphata 85.4 10 0.00036 39.2 14.0 112 395-512 12-136 (415)
69 1zhv_A Hypothetical protein AT 73.5 8.6 0.00029 33.9 7.2 51 389-439 56-106 (134)
70 1zpv_A ACT domain protein; str 73.0 15 0.00052 29.0 8.2 57 477-535 6-67 (91)
71 2fgc_A Acetolactate synthase, 72.9 56 0.0019 30.5 13.0 89 406-509 37-143 (193)
72 2f1f_A Acetolactate synthase i 72.4 53 0.0018 29.8 12.5 90 406-509 11-116 (164)
73 2ko1_A CTR148A, GTP pyrophosph 70.2 11 0.00038 29.4 6.7 32 397-431 7-38 (88)
74 1zpv_A ACT domain protein; str 69.9 17 0.0006 28.7 7.8 33 396-431 6-38 (91)
75 1zvp_A Hypothetical protein VC 69.7 8.5 0.00029 33.9 6.2 53 390-443 66-118 (133)
76 2f1f_A Acetolactate synthase i 68.6 7.8 0.00027 35.4 6.0 52 486-539 11-66 (164)
77 2pc6_A Probable acetolactate s 68.1 53 0.0018 29.8 11.5 91 406-510 12-118 (165)
78 1u8s_A Glycine cleavage system 67.6 13 0.00045 34.2 7.5 48 476-525 6-55 (192)
79 2pc6_A Probable acetolactate s 66.9 7.1 0.00024 35.7 5.3 53 485-539 11-67 (165)
80 2fgc_A Acetolactate synthase, 66.8 6.5 0.00022 36.9 5.1 54 485-540 36-93 (193)
81 2ko1_A CTR148A, GTP pyrophosph 61.1 23 0.00079 27.5 6.9 42 486-527 13-56 (88)
82 3kbq_A Protein TA0487; structu 53.8 27 0.00091 32.0 6.8 69 204-301 23-91 (172)
83 2nyi_A Unknown protein; protei 48.4 53 0.0018 30.2 8.1 35 394-431 92-126 (195)
84 2qmx_A Prephenate dehydratase; 45.8 1.7E+02 0.0057 28.9 11.6 111 321-441 120-248 (283)
85 1y7p_A Hypothetical protein AF 44.4 29 0.00098 33.2 5.4 111 406-533 12-139 (223)
86 3o1l_A Formyltetrahydrofolate 38.8 51 0.0018 32.9 6.6 34 477-512 23-56 (302)
87 3p96_A Phosphoserine phosphata 38.7 57 0.0019 33.5 7.3 36 476-513 12-47 (415)
88 1mkz_A Molybdenum cofactor bio 38.6 53 0.0018 29.7 6.2 68 204-299 28-96 (172)
89 3obi_A Formyltetrahydrofolate 35.8 47 0.0016 32.9 5.8 60 477-538 7-70 (288)
90 3n0v_A Formyltetrahydrofolate 34.8 70 0.0024 31.6 6.8 34 477-512 9-42 (286)
91 1y5e_A Molybdenum cofactor bio 33.1 78 0.0027 28.4 6.4 67 204-299 31-99 (169)
92 3lou_A Formyltetrahydrofolate 30.9 79 0.0027 31.3 6.5 35 476-512 10-44 (292)
93 1y7p_A Hypothetical protein AF 30.9 85 0.0029 29.9 6.3 50 486-535 12-68 (223)
94 2is8_A Molybdopterin biosynthe 29.5 70 0.0024 28.6 5.4 66 205-299 22-89 (164)
95 2fts_A Gephyrin; gephyrin, neu 27.9 90 0.0031 32.6 6.6 73 205-307 209-281 (419)
96 3nrb_A Formyltetrahydrofolate 26.6 77 0.0026 31.4 5.5 35 476-512 7-41 (287)
97 2pjk_A 178AA long hypothetical 26.3 1.1E+02 0.0039 27.7 6.3 67 204-299 40-108 (178)
98 2jhe_A Transcription regulator 25.0 2.8E+02 0.0097 23.8 8.7 61 398-470 3-64 (190)
99 3rfq_A Pterin-4-alpha-carbinol 24.9 1.1E+02 0.0037 28.2 5.8 68 204-299 49-116 (185)
100 1hwu_A PII protein; herbaspiri 24.6 2.9E+02 0.01 22.6 8.7 72 457-541 13-84 (112)
101 3m05_A Uncharacterized protein 22.9 2.2E+02 0.0076 24.1 6.9 27 515-541 46-72 (114)
102 2g2c_A Putative molybdenum cof 22.6 95 0.0033 27.8 4.9 66 205-299 26-96 (167)
103 3ewi_A N-acylneuraminate cytid 22.4 92 0.0032 27.8 4.8 50 304-366 11-61 (168)
104 3n0v_A Formyltetrahydrofolate 22.2 5.5E+02 0.019 25.0 11.7 34 396-432 9-42 (286)
105 3iwt_A 178AA long hypothetical 21.6 1.5E+02 0.0052 26.5 6.2 66 205-298 41-107 (178)
106 1ygy_A PGDH, D-3-phosphoglycer 20.9 5.6E+02 0.019 27.2 11.4 117 349-474 387-527 (529)
107 3mwb_A Prephenate dehydratase; 20.3 3.8E+02 0.013 26.7 9.2 111 321-441 127-250 (313)
No 1
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Probab=100.00 E-value=3.1e-95 Score=794.22 Aligned_cols=495 Identities=79% Similarity=1.142 Sum_probs=429.4
Q ss_pred cchhhhccccccccccCcCCCcceEEEEeCccccCCHHHHHHHHHHHHcCCCCCcEEEEcCCCcccHHHHHhhHhhhhcC
Q 008621 59 ARIDVIERKKSENLGVDESEKQLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCG 138 (559)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~V~KFGGsSl~~~~~~~~va~iI~~~~~~~~vVVVSA~g~~Td~L~~~~~~~~~~~ 138 (559)
...+++++++.|+ .+..+.+++|+|+|||||||+|++++++|+++|....+++++||||||||+||.|+++++.+..++
T Consensus 6 ~~~~~~~~~~~~~-~~~~~~~~~~~V~KFGGTSva~~e~i~~va~iI~~~~~~~~vVVVSA~g~~Td~Ll~~~~~~~~~~ 84 (510)
T 2cdq_A 6 IVRAVLEEKKTEA-ITEVDEKGITCVMKFGGSSVASAERMKEVADLILTFPEESPVIVLSAMGKTTNNLLLAGEKAVSCG 84 (510)
T ss_dssp --------------------CCCCEEEEECTGGGSSHHHHHHHHHHHHHCTTCCEEEEECCSTTHHHHHHHHHHHHTTTC
T ss_pred HHHHHHcccchhh-hhccCCCCCeEEEEECCcccCCHHHHHHHHHHHHhccCCCEEEEEcCCCCCchHHHHHHHHHhhcc
Confidence 3456777664443 345567888999999999999999999999999875557899999999999999999988765543
Q ss_pred cCcchhhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCC
Q 008621 139 VTNISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGV 218 (559)
Q Consensus 139 ~~~~~~~~~l~~i~~~~~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi 218 (559)
....++.+.++.++++|..++++|+.+.+.++..+++|++++.++....+.+++.+|+++|+||++|+.+++++|+++|+
T Consensus 85 ~~~~~~~~~~~~i~~~h~~i~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~r~~d~l~s~GE~~s~~ll~~~L~~~Gi 164 (510)
T 2cdq_A 85 VSNASEIEELSIIKELHIRTVKELNIDPSVILTYLEELEQLLKGIAMMKELTLRTRDYLVSFGECLSTRIFAAYLNTIGV 164 (510)
T ss_dssp TTTGGGCHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 33445566899999999999999998888899999999999999998999999999999999999999999999999999
Q ss_pred ceEEecccceEEEEecCCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCC-CCceeeecCCcchhHHHHHHHH
Q 008621 219 KARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWR-TCAITTLGRGGSDLTATTIGKA 297 (559)
Q Consensus 219 ~a~~l~~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~-~G~~~tlgRgGSD~tAa~lA~~ 297 (559)
+|++++++|++++|+++|+++++.+.++.++.+.+...|++.+.|||++||+|.+ + +|.++||||||||++|+++|.+
T Consensus 165 ~A~~l~~~~~~l~t~~~~~~~~i~~~~~~~~~~~l~~~Ll~~g~IpVv~Gf~g~~-~~~g~ittlgrGgsD~tAa~lA~~ 243 (510)
T 2cdq_A 165 KARQYDAFEIGFITTDDFTNGDILEATYPAVAKRLYDDWMHDPAVPIVTGFLGKG-WKTGAVTTLGRGGSDLTATTIGKA 243 (510)
T ss_dssp CEEEECGGGTTCEECSCSTTCCBCTTHHHHHHHHHHHHHHHSCCEEEEESSEEEE-TTTCCEEECCTTHHHHHHHHHHHH
T ss_pred CEEEEEhhHeeEEEecCCCccchhhHHHHHHHHHHHHHHHhCCcEEEEeCccccC-CCCCceEEeCCCChHHHHHHHHHH
Confidence 9999999999999999999888876666667777765556788999999999998 6 8999999999999999999999
Q ss_pred cCcCcEEEeeCCcccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeEEec
Q 008621 298 LGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRR 377 (559)
Q Consensus 298 L~A~~l~i~TDV~GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~ 377 (559)
|+|++|++|||||||||+|||++|+|++|++|||+|+.||+++|++||||+|++||+++|||++|+|+++|+.+||+|.+
T Consensus 244 l~Ad~l~i~TDVdGVytaDPr~v~~A~~I~~Is~~E~~ela~~Ga~vmh~~a~~~a~~~gIpv~I~n~~~p~~~GT~I~~ 323 (510)
T 2cdq_A 244 LGLKEIQVWKDVDGVLTCDPTIYKRATPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGEIPVRVKNSYNPKAPGTIITK 323 (510)
T ss_dssp HTCSEEEEEESSSSSBSSCTTTCTTCCBCCEEEHHHHHHHHHHHSSCCCHHHHHHHHHHTCCEEEEETTSTTSCCEEEES
T ss_pred cCCCEEEEEeCCCCcCCCCCCCCCCCEEecEeCHHHHHHHHhcCcchhHHHHHHHHHHCCCeEEEEccCcCCCCCeEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCccceeeEEeeecCeEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEecCceeEEEeCCCchhhHHHHHHHHHH
Q 008621 378 SRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQASEL 457 (559)
Q Consensus 378 ~~~~~~~~It~Is~~~~ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstSe~sIs~~v~~~~~~~~~~~~~~~~l 457 (559)
...+....|++|+.++++++|+|.+.+|.+.+||++++|+.|+++||+|+||++|+.+|||+++.++....+..+ ..+
T Consensus 324 ~~~~~~~~v~gIa~~~~~~~I~i~~~~m~~~~g~~~~if~~la~~~I~vd~I~sse~sis~~v~~~~~~~~~~~~--~~l 401 (510)
T 2cdq_A 324 TRDMTKSILTSIVLKRNVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVATSEVSISLTLDPSKLWSRELIQ--QEL 401 (510)
T ss_dssp CCCCTTCCEEEEEEEEEEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEEEETTEEEEEECCGGGSSSCCCH--HHH
T ss_pred cccccccccccccccCCeEEEEEEcCCCCCcccHHHHHHHHHHHcCCcEEEEEeCCCeEEEEEechHhhhhhHHH--HHH
Confidence 654455579999999999999999999999999999999999999999999999999999999987643210011 146
Q ss_pred HHHHHHHhhhceeecccceeEEEEEeeccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHH
Q 008621 458 DHVVEELEKIAIVNLLQHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHET 537 (559)
Q Consensus 458 ~~~~~~L~~~~~v~~~~~~aiISIVG~~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~~ 537 (559)
+.+..+++.+..+.+.+++|+||+||.|...+|+++|+|++|+++||||+||+||+|+++|||+|+++|.++|+++||++
T Consensus 402 ~~~~~el~~~~~v~~~~~~a~VsiVG~m~~~~Gvaa~~f~aL~~~~InI~mIsqGsSei~Is~vV~~~d~~~Av~aLH~~ 481 (510)
T 2cdq_A 402 DHVVEELEKIAVVNLLKGRAIISLIGNVQHSSLILERAFHVLYTKGVNVQMISQGASKVNISFIVNEAEAEGCVQALHKS 481 (510)
T ss_dssp HHHHHHHTTTSEEEEEEEEEEEEEEECGGGHHHHHHHHHHHHHHHTCCCSEEEECTTCSEEEEEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCeEEEeCCcEEEEEEEECCCChhHHHHHHHHHHHCCCCEEEEEecCCcceEEEEEeHHHHHHHHHHHHHH
Confidence 66777887777899899999999999966789999999999999999999999999999999999999999999999999
Q ss_pred hccC-ccccccccccCCCCCC
Q 008621 538 FFES-DLANLDCVCGSENNSS 557 (559)
Q Consensus 538 f~~~-~~~~~~~~~~~~~~~~ 557 (559)
||.. +.++....+...+|+.
T Consensus 482 f~~~~~~~~~~~~~~~~~~~~ 502 (510)
T 2cdq_A 482 FFESGDLSELLIQPRLGNGSP 502 (510)
T ss_dssp HHSSCCCCCCCCCCCC-----
T ss_pred HhcCCcceeeeeeccCCCCcc
Confidence 9987 6888888888889885
No 2
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=100.00 E-value=7e-87 Score=717.51 Aligned_cols=427 Identities=30% Similarity=0.479 Sum_probs=363.1
Q ss_pred cceEEEEeCccccCCHHHHHHHHHHHHcCCCCCcEEEEcCCCc-------ccHHHHHhhHhhhhcCcCcchhhhHHHHHH
Q 008621 80 QLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGK-------TTNKLLLAGEKAVSCGVTNISCIDELSFVK 152 (559)
Q Consensus 80 ~~~~V~KFGGsSl~~~~~~~~va~iI~~~~~~~~vVVVSA~g~-------~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~ 152 (559)
.+|+|+|||||||+|+++|++|+++|... +++++|||||||+ +||.|+++++.+..+ .++.+.++.++
T Consensus 2 ~~m~V~KFGGtSva~~e~i~~Va~iI~~~-~~~~vVVVSA~gk~~~~d~g~Td~Li~~a~~~~~~----~~~~~~~~~i~ 76 (446)
T 3tvi_A 2 LKIVVTKFGGSSLADSNQFKKVKGIIDSD-ANRKYIIPSAPGKRTNKDYKITDLLYLCNAHVKNG----IPFDDVFKLIS 76 (446)
T ss_dssp --CEEEEECGGGGSSHHHHHHHHHHHTTC-TTEEEEEECSCCCSSSSSCCHHHHHHHHHHHHHTT----CCCHHHHHHHH
T ss_pred CccEEEEeCccccCCHHHHHHHHHHHHhc-CCCEEEEECCCCCCCCCCcchHHHHHHHHHHhhcC----ccHHHHHHHHH
Confidence 46899999999999999999999999874 4678999999995 999999998877543 34678899999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEE
Q 008621 153 DLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFIT 232 (559)
Q Consensus 153 ~~~~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit 232 (559)
++|..++++|+.+.+.. ++++++++.+. ..+.+|+|+|+||+||+.||+++| ++.+++++++++.+
T Consensus 77 ~~~~~i~~~L~~~~~~~----~~l~~~~~~l~-----~~~~~D~lls~GE~lS~~lla~~l-----~a~~~~~~~~~~~~ 142 (446)
T 3tvi_A 77 QRYTEIVSELNIDMDIA----YYLEKVKKNIE-----NGASSDYAASRGEYLNGVILAKYL-----NAEFIDAAEVIFFD 142 (446)
T ss_dssp HHHHHHHHHHTCCSCHH----HHHHHHHHHHH-----TTCCHHHHHHHHHHHHHHHHHHHH-----TCEECCGGGTCBBC
T ss_pred HHHHHHHHHhcccHHHH----HHHHHHHHHHh-----cCccHHHHHHhHHHHHHHHHHHHh-----cceeECHHHheeeC
Confidence 99999999998775432 33333333321 126789999999999999999997 58999999985554
Q ss_pred ecCCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCccc
Q 008621 233 TDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGV 312 (559)
Q Consensus 233 ~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV 312 (559)
+ +++.+.+.++..+.+ +++.+.|||++||+|.+ ++|.++||||||||++|+++|.+|+|+++++|||||||
T Consensus 143 ~---~~~~~~~~~~~~l~~-----~l~~~~v~Vv~Gf~g~~-~~g~~~tl~rGgsD~~Aa~lA~~l~A~~~~i~TDVdGv 213 (446)
T 3tvi_A 143 K---SGCFDEKKSYEKIKE-----KVLSCNKAVIPGFYGSS-FNGDVKTFSRGGSDVTGSIISAGVNADLYENWTDVSGF 213 (446)
T ss_dssp C-----CBCHHHHHHHHHH-----HTTTCSSEECCCSEEEC-TTSCEEECSSSTTHHHHHHHHHHTTCSEEEEEESSSSC
T ss_pred C---CCceehHhhHHHHHH-----HHhcCCeEEeeCceecC-CCCCeEEEccCCchHHHHHHHHHcCCCEEEEEeCCCcc
Confidence 4 445555555544432 35678999999999999 48999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeEEecCCCCccc--eeeEEe
Q 008621 313 LTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKA--VLTSIV 390 (559)
Q Consensus 313 ~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~~--~It~Is 390 (559)
||+|||++|+|++|+++||+|+.||+++|++||||+|++||+++|||++|+|+++|+.+||+|.+.....+. .|++|+
T Consensus 214 yt~dP~~~~~a~~i~~is~~e~~ela~~Ga~vl~~~a~~~a~~~~ipi~i~~~~~p~~~GT~i~~~~~~~~~~~~v~gIa 293 (446)
T 3tvi_A 214 LMADPRIVENPKTISKISYKELRELSYMGATVLHEEAIFPVKDSGIPINIKNTNKPSDPGTLILSDTHKEINLGTITGIA 293 (446)
T ss_dssp BSSCTTTSSSCCBCSEEEHHHHHHTTTC----CCSTTTHHHHHSSCCEEEEETTBTTSCCEEEECTTTSCCCTTCCCEEE
T ss_pred CCCCCCcCCCCeEcceeCHHHHHHHHhCCCCcchHHHHHHHHHcCCeEEEecCCCCCCCCEEEecCCcccccCcceEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999987654433 799999
Q ss_pred eecCeEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEecCceeEEEeCCCchhhHHHHHHHHHHHHHHHHHhh---h
Q 008621 391 LKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQASELDHVVEELEK---I 467 (559)
Q Consensus 391 ~~~~ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstSe~sIs~~v~~~~~~~~~~~~~~~~l~~~~~~L~~---~ 467 (559)
.++|+++|++.+.+|.+.+||++++|+.|++++|+|+||++++.+++|+++++++.. .+..++++++. .
T Consensus 294 ~~~~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i~~~~~~is~~V~~~d~~~--------~~~~~~~el~~~~~~ 365 (446)
T 3tvi_A 294 GKKNFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHMPSGVDSVSLVIEDCKLDG--------KCDKIIEEIKKQCNP 365 (446)
T ss_dssp EEEEEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEBCEETTEEEEEEEHHHHTT--------THHHHHHHHHHHSCC
T ss_pred ecCCEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEEecCCCEEEEEEecchHHH--------HHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999998765421 12334444543 3
Q ss_pred ceeecccceeEEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhccCc
Q 008621 468 AIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFESD 542 (559)
Q Consensus 468 ~~v~~~~~~aiISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~~f~~~~ 542 (559)
..+++.+++|+||+||. |...||+++|+|++|+++||||+||+||+|+++|||+|+++|.++|+++||++||+..
T Consensus 366 ~~v~v~~~vA~VSvVG~gM~~~~Gvaarif~aLa~~~InI~mIsqgtSei~Is~vV~~~d~~~Av~aLH~~ff~~~ 441 (446)
T 3tvi_A 366 DSIEIHPNMALVATVGTGMAKTKGIANKIFTALSKENVNIRMIDQGSSEINVIVGVETVDFEKAVKSIYNAFNEGH 441 (446)
T ss_dssp SEEEEEEEEEEEEEECGGGSSCTTHHHHHHHHHHHTTCCEEEEEECSCTTEEEEEEEGGGHHHHHHHHHHHHC---
T ss_pred CcEEEeCCeEEEEEECCCccCChhHHHHHHHHHHHCCCCEEEEEecCCCceEEEEEcHHHHHHHHHHHHHHHhccc
Confidence 56888899999999997 8889999999999999999999999999999999999999999999999999999873
No 3
>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*
Probab=100.00 E-value=1.3e-86 Score=717.89 Aligned_cols=444 Identities=35% Similarity=0.513 Sum_probs=386.4
Q ss_pred CcceEEEEeCccccCCHHHHHHHHHHHHcCCCCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHHH
Q 008621 79 KQLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (559)
Q Consensus 79 ~~~~~V~KFGGsSl~~~~~~~~va~iI~~~~~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 158 (559)
||+|+|+|||||||+|++++++|+++|... .++++||||||||+||.|+++++.+. ...+.+.++.++++|.++
T Consensus 1 mm~~~V~KFGGTSv~~~e~i~~va~ii~~~-~~~~vVVvSA~g~~Td~L~~~~~~~~-----~~~~~~~i~~i~~~~~~i 74 (449)
T 2j0w_A 1 MSEIVVSKFGGTSVADFDAMNRSADIVLSD-ANVRLVVLSASAGITNLLVALAEGLE-----PGERFEKLDAIRNIQFAI 74 (449)
T ss_dssp --CCEEEEECSGGGSSHHHHHHHHHHHTSC-TTEEEEEECCCTTHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHH
T ss_pred CCccEEEEECCccCCCHHHHHHHHHHHHhc-CCCEEEEeCCCCchHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHH
Confidence 477999999999999999999999999764 34789999999999999999876531 123555688999999999
Q ss_pred HHhcCCCHH---HHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEecC
Q 008621 159 VDELGIDRS---IIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD 235 (559)
Q Consensus 159 ~~~L~~~~~---~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~ 235 (559)
+++|..+.. .++..+++| +.+.++..+.+ +++.+|+++|+||++|+.+++.+|+++|+++++++++|+ ++|+++
T Consensus 75 ~~~l~~~~~~~~~i~~~~~~l-~~l~~~~~~~~-~~~~~d~l~s~Ge~~s~~l~~~~L~~~Gi~a~~l~~~~~-l~t~~~ 151 (449)
T 2j0w_A 75 LERLRYPNVIREEIERLLENI-TVLAEAAALAT-SPALTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKV-MRTNDR 151 (449)
T ss_dssp HTTSSSTHHHHHHHHHHHHHH-HHHHHHHTTCC-CHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEECCGGGT-CBBCSC
T ss_pred HHHhcccHHHHHHHHHHHHHH-HHHhhhhccCc-CHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEchHHh-eeecCC
Confidence 999987643 477888888 55677766655 599999999999999999999999999999999999999 889889
Q ss_pred CCCceeeecch-HHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCccccc
Q 008621 236 FTNADILEATY-PAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLT 314 (559)
Q Consensus 236 ~~~a~i~~~~~-~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~t 314 (559)
|+++++..... .+..+.+. .|++. .|||++||+|.+ ++|.++|+||||||++|+++|.+|+|+++++||||||||+
T Consensus 152 ~~~~~~~~~~~~~~~~~~l~-~l~~~-~IpVv~Gf~g~~-~~g~~ttl~rGgsD~~Aa~lA~~l~Ad~l~i~TDVdGv~~ 228 (449)
T 2j0w_A 152 FGRAEPDIAALAELAALQLL-PRLNE-GLVITQGFIGSE-NKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIYT 228 (449)
T ss_dssp TTSCCBCHHHHHHHHHHHTH-HHHHH-SEEEEESSEEEC-TTSCEEECCTTHHHHHHHHHHHHTTCSEEEEEESSSSEES
T ss_pred CCCccccHhHhHHHHHHHHH-HHhcC-CEEEEeCCeeeC-CCCCEEEeCCCChHHHHHHHHHHCCCCEEEEccccCCcCc
Confidence 99887754332 22333332 33433 499999999999 4899999999999999999999999999999999999999
Q ss_pred CCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeEEecCCCCccceeeEEeeecC
Q 008621 315 CDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRN 394 (559)
Q Consensus 315 aDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~~~It~Is~~~~ 394 (559)
+|||++|+|++|+++||+|+.+|+++|+|||||+|++||+++|||++|+|+++|+.+||+|.+... ....||+|+.++|
T Consensus 229 ~DPr~~~~a~~i~~is~~e~~ela~~G~kvlh~~a~~~a~~~gi~v~I~~~~~p~~~GT~I~~~~~-~~~~v~gIa~~~~ 307 (449)
T 2j0w_A 229 TDPRVVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPRAGGTLVCNKTE-NPPLFRALALRRN 307 (449)
T ss_dssp SCTTTCTTCCEESEEEHHHHHHHHHTTCTTSCTTTHHHHHHHTCCEEEEESSCTTSCCEEEESCCS-SCCSEEEEEEEEE
T ss_pred CCCCCCCCCEEccCccHHHHHHHHhcCCccchHHHHHHHHHCCCeEEEEECCCCCCCeeEEecccc-cccccccceeeCC
Confidence 999999999999999999999999999999999999999999999999999999999999998642 3457999999999
Q ss_pred eEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEecCceeEEEeCCCchhhHHHHHHHHHHHHHHHHHhhhceeeccc
Q 008621 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQASELDHVVEELEKIAIVNLLQ 474 (559)
Q Consensus 395 ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstSe~sIs~~v~~~~~~~~~~~~~~~~l~~~~~~L~~~~~v~~~~ 474 (559)
+++|+|.+.+|.+.+||++++|+.|++++|+|+||++|+.+++|++++++.+..... ..++++..+|+.+..+++.+
T Consensus 308 ~~~i~i~~~~m~~~~g~~~~if~~l~~~~i~vd~i~ss~~sis~~v~~~~~~~~~~~---~~~~~~~~el~~~~~v~~~~ 384 (449)
T 2j0w_A 308 QTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLITTSEVSVALTLDTTGSTSTGDT---LLTQSLLMELSALCRVEVEE 384 (449)
T ss_dssp EEEEEECCCSCSCHHHHHHHHTTTTTTTTCCCSEEEEETTEEEEEECCCCCSSTTCC---SSCHHHHHHHHHHSCEEEEE
T ss_pred EEEEEEEecCCCCccCHHHHHHHHHHHcCCCEEEEEeCCCeEEEEEeccccchhhHH---HHHHHHHHHhccCCeEEEeC
Confidence 999999999999999999999999999999999999999999999998653110000 02445566777667788899
Q ss_pred ceeEEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhcc
Q 008621 475 HRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFE 540 (559)
Q Consensus 475 ~~aiISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~~f~~ 540 (559)
++|+||+||. |...+|+++|+|++|++ |||+||+||+|+++|||+|+++|.++|+++||++||.
T Consensus 385 ~~a~vsvVG~gm~~~~gv~~~~f~aL~~--ini~mIsqg~Se~~Is~vV~~~d~~~Av~~lh~~f~~ 449 (449)
T 2j0w_A 385 GLALVALIGNDLSKACGVGKEVFGVLEP--FNIRMICYGASSHNLCFLVPGEDAEQVVQKLHSNLFE 449 (449)
T ss_dssp EEEEEEEEESSCTTSSSHHHHHHSSCTT--SCCCEEEESSCTTEEEEEEEGGGHHHHHHHHHHHHHC
T ss_pred CeEEEEEECCCccccccHHHHHHHHHhC--CCeEEEEecCCCcEEEEEEeHHHHHHHHHHHHHHHhC
Confidence 9999999997 88899999999999964 9999999999999999999999999999999999983
No 4
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=100.00 E-value=7.3e-85 Score=710.00 Aligned_cols=446 Identities=37% Similarity=0.632 Sum_probs=401.9
Q ss_pred ceEEEEeCccccCCHHHHHHHHHHHHcC-CCC-CcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHHH
Q 008621 81 LTCVMKFGGSSLASAERMREVAELILSF-PNE-RPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (559)
Q Consensus 81 ~~~V~KFGGsSl~~~~~~~~va~iI~~~-~~~-~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 158 (559)
||+|+|||||||+|++++++|+++|... .++ +++||||||||+||.|+++++.+..++ ...++.+.++.++++|..+
T Consensus 1 ~~~V~KFGGtSv~~~~~i~~va~ii~~~~~~~~~~vVVvSA~g~~Td~L~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~ 79 (473)
T 3c1m_A 1 MTTVMKFGGTSVGSGERIRHVAKIVTKRKKEDDDVVVVVSAMSEVTNALVEISQQALDVR-DIAKVGDFIKFIREKHYKA 79 (473)
T ss_dssp -CEEEEECTTTTSSHHHHHHHHHHHHHHHTTCSCEEEEECCSTTHHHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhhcCCCCEEEEEcCChhhHHHHHHHHHHhhccc-ChHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999763 346 789999999999999999887764321 1235677899999999999
Q ss_pred HHhcCCCH---H----HHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEE
Q 008621 159 VDELGIDR---S----IIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231 (559)
Q Consensus 159 ~~~L~~~~---~----~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~ii 231 (559)
+++|..+. + .++..+++|++++.++..+++++++.+|+++++||++|+.+++++|+++|++|+++++++++++
T Consensus 80 ~~~l~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~ge~~s~~l~~~~L~~~G~~a~~l~~~~~~i~ 159 (473)
T 3c1m_A 80 IEEAIKSEEIKEEVKKIIDSRIEELEKVLIGVAYLGELTPKSRDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGII 159 (473)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECHHHHTEE
T ss_pred HHHhccchhhhhhhHHHHHHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEchheeEE
Confidence 99998772 3 6888999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCcee-eecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCc
Q 008621 232 TTDDFTNADI-LEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (559)
Q Consensus 232 t~~~~~~a~i-~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~ 310 (559)
|+++|+++++ ...++..+.. +++.+.|||++||+|.+ ++|.++|+||||||++|+++|.+|+|+++++|||||
T Consensus 160 t~~~~~~~~~~~~~~~~~i~~-----ll~~g~ipVv~G~~g~~-~~g~~~~l~rg~sD~~Aa~lA~~l~Ad~l~i~TDVd 233 (473)
T 3c1m_A 160 TDNNFGSARVKRLEVKERLLP-----LLKEGIIPVVTGFIGTT-EEGYITTLGRGGSDYSAALIGYGLDADIIEIWTDVS 233 (473)
T ss_dssp ECSCTTSCCEEEECHHHHHHH-----HHHTTCEEEEESSEEEE-TTSCEEECCTTTHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred EccCCCCccccHhhhHHHHHH-----HHhCCcEEEEeCCcccC-CCCCEEEeCCCChHHHHHHHHHHcCCCEEEEeeCCC
Confidence 9999999988 5677765554 34678999999999998 489999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeEEecCCCCccceeeEEe
Q 008621 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIV 390 (559)
Q Consensus 311 GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~~~It~Is 390 (559)
|||++|||++|++++|+++||+|+.+|+++|+++|||+++++|.++|||++|+|+++|+.+||+|.+...+....+++|+
T Consensus 234 Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g~~~m~~~a~~~a~~~gi~v~I~~~~~~~~~GT~i~~~~~~~~~~v~gIa 313 (473)
T 3c1m_A 234 GVYTTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFEPESEGTLITNDMEMSDSIVKAIS 313 (473)
T ss_dssp SCBSSCTTTCTTCCBCSEEEHHHHHHHHHTTCTTSCGGGHHHHHHHTCCEEEEETTSTTSCCEEEESCCCCCTTSCCEEE
T ss_pred cceeCCCCCCCCCeEecccCHHHHHHHHhcCCcchHHHHHHHHHHcCCEEEEEecCCCCCceEEEeccccccccccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999986544455799999
Q ss_pred eecCeEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEE--ecCceeEEEeCCCchhhHHHHHHHHHHHHHHHHH----
Q 008621 391 LKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKLWSRELIQQASELDHVVEEL---- 464 (559)
Q Consensus 391 ~~~~ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~Is--tSe~sIs~~v~~~~~~~~~~~~~~~~l~~~~~~L---- 464 (559)
.++++++|++.+.+|.+.+|+++++|+.|+++||+|+||+ +|+.+++|++++++.. + .++.+.+++
T Consensus 314 ~~~~~a~Isv~g~~m~~~~G~~a~if~~La~~~InV~~IsQ~tse~~Is~~V~~~d~~--~------a~~~L~~~l~~~~ 385 (473)
T 3c1m_A 314 TIKNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSETNISLVVSEEDVD--K------ALKALKREFGDFG 385 (473)
T ss_dssp EEEEEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECCTTCCEEEEEEGGGHH--H------HHHHHHHHHCC--
T ss_pred ccCCeEEEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEechHHH--H------HHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999999 7789999999987642 1 233334455
Q ss_pred ----hh---hceeecccceeEEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHH
Q 008621 465 ----EK---IAIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHE 536 (559)
Q Consensus 465 ----~~---~~~v~~~~~~aiISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~ 536 (559)
+. +..+.+.+++|+|++||. |...||+++|+|++|+++||||+||+||+|+.+|||+|+++|.++|+++||+
T Consensus 386 ~~~~~~~~~~~~v~~~~~~a~vsvVG~gm~~~~Gvaak~f~aL~~~~InI~misqgtSe~~Is~vV~~~d~~~Av~aLh~ 465 (473)
T 3c1m_A 386 KKSFLNNNLIRDVSVDKDVCVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVNISFVIDEKDLLNCVRKLHE 465 (473)
T ss_dssp --CTTSCCCEEEEEEEEEEEEEEEECTTTTTCTTHHHHHHHHHHHHTCCCCEEEESSCSSEEEEEEEGGGHHHHHHHHHH
T ss_pred ccccccccccceEEEeCCcEEEEEEecCCCCChhHHHHHHHHHHHCCCCEEEEecCCCCceEEEEEcHHHHHHHHHHHHH
Confidence 43 457888899999999997 8889999999999999999999999999999999999999999999999999
Q ss_pred HhccC
Q 008621 537 TFFES 541 (559)
Q Consensus 537 ~f~~~ 541 (559)
+||..
T Consensus 466 ~f~~~ 470 (473)
T 3c1m_A 466 KFIEK 470 (473)
T ss_dssp HHTTC
T ss_pred HHhcc
Confidence 99974
No 5
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}
Probab=100.00 E-value=1.2e-72 Score=628.82 Aligned_cols=395 Identities=28% Similarity=0.425 Sum_probs=338.4
Q ss_pred cceEEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHH
Q 008621 80 QLTCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157 (559)
Q Consensus 80 ~~~~V~KFGGsSl~~~~~~~~va~iI~~~~--~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 157 (559)
|+++|+|||||||+|++++++++++|.... +.+++||+||||++||.|++++...
T Consensus 1 m~~iViK~GGssl~~~~~i~~va~~i~~~~~~g~~vvvV~sa~G~~t~~ll~~~~~~----------------------- 57 (600)
T 3l76_A 1 MALIVQKFGGTSVGTVERIQAVAQRIKRTVQGGNSLVVVVSAMGKSTDVLVDLAQQI----------------------- 57 (600)
T ss_dssp -CEEEEEECSGGGSSHHHHHHHHHHHHHHHHTTCEEEEEECCSSTHHHHHHHHHHHH-----------------------
T ss_pred CceEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCcEEEEECCCcHHHHHHHHHHHhh-----------------------
Confidence 568999999999999999999999998753 4678999999999999998754311
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEecCCC
Q 008621 158 TVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFT 237 (559)
Q Consensus 158 ~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~ 237 (559)
. ...+++.+|+++++||++|+.+++.+|+++|+++++++++|+++++++.++
T Consensus 58 -----~-----------------------~~~~~~~~d~l~s~Ge~~s~~l~~~~l~~~G~~a~~l~~~~~~l~~~~~~~ 109 (600)
T 3l76_A 58 -----S-----------------------PNPCRREMDMLLSTGEQVSIALLSLALQEIDQPAISLTGAQVGIVTEAEHS 109 (600)
T ss_dssp -----C-----------------------SSCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEGGGTEEEEC----
T ss_pred -----c-----------------------cCCCHHHHHHHHHHhHHHHHHHHHHHHHhCCCCeEEechhHcceEEecCCC
Confidence 0 123577889999999999999999999999999999999999999988888
Q ss_pred CceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCC--ceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcccccC
Q 008621 238 NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTC--AITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTC 315 (559)
Q Consensus 238 ~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G--~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~ta 315 (559)
++++...++..+.+ +++.+.|||++||+|.++ +| .++||||||||++|+++|.+|+|++|+|||||||||++
T Consensus 110 ~~~~~~~~~~~i~~-----ll~~g~IpVv~Gf~g~~~-~g~~~~~tlgrGgsD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~ 183 (600)
T 3l76_A 110 RARILEIRPDRLEH-----HLREGKVVVVAGFQGISS-VEHLEITTLGRGGSDTSAVALAAALKADFCEIYTDVPGILTT 183 (600)
T ss_dssp ---CCEEEECCHHH-----HHTTTCEEEEECEEEC-----CEEEECCCTTHHHHHHHHHHHHHTCSEEEEEESSSSCBSS
T ss_pred CceeccccHHHHHH-----HHhCCCEEEEECCeecCC-CCCEEEecCCCCChHHHHHHHHHHcCCCEEEEEECCCcCCCC
Confidence 88877666554443 246789999999999994 89 89999999999999999999999999999999999999
Q ss_pred CCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeEEecCCC--------Cccceee
Q 008621 316 DPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRD--------MSKAVLT 387 (559)
Q Consensus 316 DP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~--------~~~~~It 387 (559)
|||++|+|++|+++||+|+.+|+++|+++|||+|++||+++|||++|+|+++| .+||+|.+... +....|+
T Consensus 184 dPr~~~~a~~i~~is~~e~~ela~~G~~vm~p~a~~~a~~~gipv~I~n~~~~-~~GT~I~~~~~~~~~~~~~~~~~~v~ 262 (600)
T 3l76_A 184 DPRLVPEAQLMAEITCDEMLELASLGAKVLHPRAVEIARNYGIPLVVRSSWSD-EPGTKVVAPPVQNRSLVGLEIAKAVD 262 (600)
T ss_dssp CTTTCTTCCBCSEEEHHHHHHTGGGGTTTCCHHHHHHHHHHTCCEEEEETTCC-SCCEEEECCCCCSCCCCCCBSSCSCC
T ss_pred CCCCCCCCeEeeEEcHHHHHHHHhCCCCccHHHHHHHHHHCCCeEEEEECCCC-CCCeEEecCCccccccccccccCcce
Confidence 99999999999999999999999999999999999999999999999999985 79999998653 2345799
Q ss_pred EEeeecCeEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEecC-----ceeEEEeCCCchhhHHHHHHHHHHHHHHH
Q 008621 388 SIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSE-----VSLSLTLDPSKLWSRELIQQASELDHVVE 462 (559)
Q Consensus 388 ~Is~~~~ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstSe-----~sIs~~v~~~~~~~~~~~~~~~~l~~~~~ 462 (559)
+|+.++|+++|++. +|.+.+||++++|+.|++++|+||||+++. .+++|+++.+++.. + .. .++++..
T Consensus 263 gi~~~~~~~~i~i~--~~~~~~g~~~~if~~La~~~I~Vd~I~qs~~~~~~~~Isftv~~~~~~~--a-~~--~l~~~~~ 335 (600)
T 3l76_A 263 GVEYDADQAKVALL--RVPDRPGVASKLFRDIAQQQVDIDLIIQSIHDGNSNDIAFTVVKDLLNT--A-EA--VTSAIAP 335 (600)
T ss_dssp EEEEECCCEEEEEE--EEECSTTHHHHHHHHHHHTTCCCCCEEBCCCBTTEEEEEEEECGGGHHH--H-HH--HHHHHGG
T ss_pred EEEeeCCEEEEEEe--CCCCcccHHHHHHHHHHHcCCCEEEEEeeccCCCCceEEEEEeHHHHHH--H-HH--HHHHHHH
Confidence 99999999999998 688999999999999999999999999876 68999999886532 1 11 2333334
Q ss_pred HHh------hhceeecccceeEEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHH
Q 008621 463 ELE------KIAIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALH 535 (559)
Q Consensus 463 ~L~------~~~~v~~~~~~aiISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH 535 (559)
+++ ....+.+.+++|+|++||. |...||+++|+|++|++++|||.||++ |+++||++|+++|.++|+++||
T Consensus 336 el~~~~~~~~~~~v~~~~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~ist--Se~~Is~vI~~~d~~~Av~aLh 413 (600)
T 3l76_A 336 ALRSYPEADQEAEIIVEKGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMIST--SEVKVSCVIDQRDADRAIAALS 413 (600)
T ss_dssp GGSSSTTCSSSSEEEEECSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEEE--CSSEEEEEEEGGGHHHHHHHHH
T ss_pred HhhccccccCcceeEecCCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEec--CCCEEEEEEcHHHHHHHHHHHH
Confidence 442 3457888899999999997 888999999999999999999999995 8999999999999999999999
Q ss_pred HHhccC
Q 008621 536 ETFFES 541 (559)
Q Consensus 536 ~~f~~~ 541 (559)
++|+..
T Consensus 414 ~~f~~~ 419 (600)
T 3l76_A 414 NAFGVT 419 (600)
T ss_dssp HHTTCC
T ss_pred Hhhccc
Confidence 999986
No 6
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=100.00 E-value=9.8e-72 Score=599.12 Aligned_cols=394 Identities=34% Similarity=0.490 Sum_probs=313.3
Q ss_pred cceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHH
Q 008621 80 QLTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157 (559)
Q Consensus 80 ~~~~V~KFGGsSl~~~~~~~~va~iI~~~--~~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 157 (559)
|+++|+|||||||++++++++++++|... .+.++|||+||+|+.||.|++.....
T Consensus 1 m~~iViK~GGssl~~~~~i~~v~~~i~~l~~~g~~~vvV~sa~g~~~~~ll~~~~~~----------------------- 57 (421)
T 3ab4_A 1 MALVVQKYGGSSLESAERIRNVAERIVATKKAGNDVVVVCSAMGDTTDELLELAAAV----------------------- 57 (421)
T ss_dssp -CEEEEEECSGGGSSHHHHHHHHHHHHHHHHTTCEEEEEECCSTTHHHHHHHHHHHH-----------------------
T ss_pred CCeEEEEEChhHhCCHHHHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhhhh-----------------------
Confidence 57899999999999999999999999874 34578999999999999998753210
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEecCCC
Q 008621 158 TVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFT 237 (559)
Q Consensus 158 ~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~ 237 (559)
....+++.+|+++++||++|+.+++++|+++|+++.+++++|+++++++.|+
T Consensus 58 ----------------------------~~~~~~~~~d~~~a~Ge~~~~~ll~~~L~~~G~~a~~l~~~~~~~~t~~~~~ 109 (421)
T 3ab4_A 58 ----------------------------NPVPPAREMDMLLTAGERISNALVAMAIESLGAEAQSFTGSQAGVLTTERHG 109 (421)
T ss_dssp ----------------------------CSSCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEECCCC-----------
T ss_pred ----------------------------ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEEehhhceEEeccCCC
Confidence 0123578899999999999999999999999999999999999899988888
Q ss_pred CceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCC-CceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcccccCC
Q 008621 238 NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRT-CAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCD 316 (559)
Q Consensus 238 ~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~-G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~taD 316 (559)
++++...+...+.+ +++++.|||++||+|.+ ++ |+++||||||||++|+++|.+|+|++|+|||||||||++|
T Consensus 110 ~~~v~~~~~~~i~~-----~l~~g~ipVv~g~~g~~-~~~g~~~tlgrg~sD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~d 183 (421)
T 3ab4_A 110 NARIVDVTPGRVRE-----ALDEGKICIVAGFQGVN-KETRDVTTLGRGGSDTTAVALAAALNADVCEIYSDVDGVYTAD 183 (421)
T ss_dssp ------CCHHHHHH-----HHHTTCEEEC-------------------CCHHHHHHHHHHHHTCSEEEEEESCCSCBSSC
T ss_pred CeeechhhHHHHHH-----HHhCCCEEEEeCCcCcC-CCCCceEEeCCCCHHHHHHHHHHHCCCCEEEEEECCCccCcCC
Confidence 88877766655543 34678999999999999 48 9999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeEEecC-CC--CccceeeEEeeec
Q 008621 317 PNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRS-RD--MSKAVLTSIVLKR 393 (559)
Q Consensus 317 P~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~-~~--~~~~~It~Is~~~ 393 (559)
||++|++++|++|||+|+.||+++|++++||+|+++|.++|||++|+|+++| ++||+|.+. .. +....|++|+.++
T Consensus 184 Pr~~~~a~~i~~is~~e~~el~~~Ga~v~~~~a~~~a~~~gi~v~I~n~~~~-~~GT~I~~~~~~~~~~~~~i~~i~~~~ 262 (421)
T 3ab4_A 184 PRIVPNAQKLEKLSFEEMLELAAVGSKILVLRSVEYARAFNVPLRVRSSYSN-DPGTLIAGSMEDIPVEEAVLTGVATDK 262 (421)
T ss_dssp TTTSTTCCBCSEECHHHHHHHHHTTCCSSCHHHHHHHHHTTCCEEEEESSSC-CCCEEECSCGGGSCTTTCCCCEEEEEC
T ss_pred CCCCCCCeEccccCHHHHHHHHhcCCcCchHHHHHHHHHcCCCEEEecCcCC-CCCeEEEecCcccccccCccceEEeeC
Confidence 9999999999999999999999999999999999999999999999999999 799999976 32 2445699999999
Q ss_pred CeEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEe--cC-----ceeEEEeCCCchhhHHHHHHHHHHHHHHHHHhh
Q 008621 394 NVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT--SE-----VSLSLTLDPSKLWSRELIQQASELDHVVEELEK 466 (559)
Q Consensus 394 ~ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~Ist--Se-----~sIs~~v~~~~~~~~~~~~~~~~l~~~~~~L~~ 466 (559)
|+++|+|.+ +.+.+|+++++|+.|+++||+|+||++ ++ .+++|+++.++... ..+ .++++..++.
T Consensus 263 ~~~~i~v~~--~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~~~~~--a~~---~l~~~~~~~~- 334 (421)
T 3ab4_A 263 SEAKVTVLG--ISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRSDGRR--AME---ILKKLQVQGN- 334 (421)
T ss_dssp SEEEEEEEE--EESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETTTHHH--HHH---HHHHHHTTTT-
T ss_pred CEEEEEEec--cCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEechhHHH--HHH---HHHHHHHHcC-
Confidence 999999996 778899999999999999999999963 43 58999999876432 111 2333333333
Q ss_pred hceeecccceeEEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhccC
Q 008621 467 IAIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFES 541 (559)
Q Consensus 467 ~~~v~~~~~~aiISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~~f~~~ 541 (559)
...+.+.+++|+|++||. |...||+++|+|++|+++||||.||+. |+.+||++|+++|.++|+++||++|+..
T Consensus 335 ~~~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is~--Se~~is~vV~~~d~~~Av~~Lh~~f~~~ 408 (421)
T 3ab4_A 335 WTNVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIST--SEIRISVLIREDDLDAAARALHEQFQLG 408 (421)
T ss_dssp CSEEEEECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEEEE--ETTEEEEEEEGGGHHHHHHHHHHHTTCC
T ss_pred CceEEEeCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEEEc--CCCeEEEEEeHHHHHHHHHHHHHHHhcC
Confidence 356888899999999997 888999999999999999999999985 8999999999999999999999999975
No 7
>2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase, UMP kinase, aspartokinase fold, pyrimidine nucleotide synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus solfataricus} PDB: 2j4k_A* 2j4l_A*
Probab=99.97 E-value=1.6e-30 Score=256.46 Aligned_cols=205 Identities=18% Similarity=0.221 Sum_probs=160.7
Q ss_pred ceEEEEeCccccC--CHHHHHHHHHHHHcCC--CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHH
Q 008621 81 LTCVMKFGGSSLA--SAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHH 156 (559)
Q Consensus 81 ~~~V~KFGGsSl~--~~~~~~~va~iI~~~~--~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~ 156 (559)
+++|+|||||++. +++.++++++.|.... +.++|+|+|| |.+++.++++
T Consensus 1 ~~iViK~GGs~l~~~~~~~~~~~~~~i~~l~~~g~~vvlV~gg-G~~~~~~~~~-------------------------- 53 (226)
T 2j4j_A 1 MNIILKISGKFFDEDNVDNLIVLRQSIKELADNGFRVGIVTGG-GSTARRYIKL-------------------------- 53 (226)
T ss_dssp CEEEEEECTHHHHTCCHHHHHHHHHHHHHHHHTTCEEEEEECC-HHHHHHHHHH--------------------------
T ss_pred CeEEEEeccccccCCCHHHHHHHHHHHHHHHhCCCeEEEEECc-chHhchhHHH--------------------------
Confidence 4689999999999 8999999999998742 3455666654 5565554332
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEecCC
Q 008621 157 RTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF 236 (559)
Q Consensus 157 ~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~ 236 (559)
+++++. ++...|.+.++|+.+++.|++.+|+++|+++ +
T Consensus 54 --~~~~g~-------------------------~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~---~------------ 91 (226)
T 2j4j_A 54 --AREIGI-------------------------GEAYLDLLGIWASRLNAYLVMFSLQDLAYMH---V------------ 91 (226)
T ss_dssp --HHHTTC-------------------------CHHHHHHHHHHHHHHHHHHHHHHHTTSBCSC---C------------
T ss_pred --HHHhCC-------------------------CcccHHHHHHHHHHHHHHHHHHHHHHhCCCC---C------------
Confidence 233332 2345677888999999999999999999854 1
Q ss_pred CCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcccccCC
Q 008621 237 TNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCD 316 (559)
Q Consensus 237 ~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~taD 316 (559)
..++..+. .+++.+.|||++| | + + .++||++|+++|.+|+|++++|||||||||++|
T Consensus 92 ------~~~~~~i~-----~ll~~g~ipVi~g--g-~-~--------~~~~D~~Aa~lA~~l~Ad~liilTdVdGv~~~d 148 (226)
T 2j4j_A 92 ------PQSLEEFI-----QDWSHGKVVVTGG--F-Q-P--------GQSTAAVAALVAEASSSKTLVVATNVDGVYEKD 148 (226)
T ss_dssp ------CSSHHHHH-----HHHTTSSBEEECC--C-S-T--------TSCHHHHHHHHHHHTTCSEEEEEESSSSCBSSC
T ss_pred ------cCCHHHHH-----HHHHCCCEEEEcC--C-C-C--------CCCcHHHHHHHHHhcCCCEEEEeeccceeeCCC
Confidence 12333332 2357899999998 3 2 2 355999999999999999999999999999999
Q ss_pred CCCCCCCccccccCHHHHHHHHHc-CCC------cchHhHHHHHHhCCCCEEEecCCCCC---------CCCeEEec
Q 008621 317 PNIHPHAKPVPYLTFDEAAELAYF-GAQ------VLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIRR 377 (559)
Q Consensus 317 P~~v~~a~~i~~ls~~Ea~eLa~~-Ga~------vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~~ 377 (559)
|+.+|++++|++++|+|+.+++.. |++ ++||+++.+|.++|+|++|.|+++|+ ..||+|.+
T Consensus 149 P~~~~~a~~i~~i~~~e~~~l~~~~~~~~ggm~~~~k~~a~~~a~~~gi~v~I~~~~~~~~l~~~~~g~~~GT~i~~ 225 (226)
T 2j4j_A 149 PRIYADVKLIPHLTTQDLRKILEGSQSVQAGTYELLDPLAIKIVERSKIRVIVMNYRKLNRIIDILKGEEVSSIIEP 225 (226)
T ss_dssp TTTSSSCCBCSEEEHHHHHHHHC----------CCSCHHHHHHHHHTTCEEEEEEGGGGGGHHHHHTTCSSCEEEEC
T ss_pred CCCCCCCeEccccCHHHHHHHhhcCCCCcCCccccchHHHHHHHHHCCCeEEEEeCCChhHHHHHHcCCCCceEEee
Confidence 999999999999999999999654 666 99999999999999999999988774 46899864
No 8
>1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural genomics, structure initiative, PSI; 2.60A {Neisseria meningitidis} SCOP: c.73.1.3
Probab=99.97 E-value=4.1e-30 Score=255.49 Aligned_cols=215 Identities=21% Similarity=0.295 Sum_probs=165.3
Q ss_pred cceEEEEeCccccC-------CHHHHHHHHHHHHcCC--CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHH
Q 008621 80 QLTCVMKFGGSSLA-------SAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF 150 (559)
Q Consensus 80 ~~~~V~KFGGsSl~-------~~~~~~~va~iI~~~~--~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~ 150 (559)
++++|.||||+++. +.+.++++++.|.... +.++|+|+|+ |...+.+.
T Consensus 7 ~~~iViK~GGs~l~~~~~~~~~~~~~~~~~~~i~~l~~~g~~vviV~Gg-G~~~~g~~---------------------- 63 (239)
T 1ybd_A 7 YKRVLLKLSGESLMGSDPFGINHDTIVQTVGEIAEVVKMGVQVGIVVGG-GNIFRGVS---------------------- 63 (239)
T ss_dssp CSEEEEEECGGGGGTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECC-HHHHHHHH----------------------
T ss_pred CCEEEEEEchHHhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-cHHHhchh----------------------
Confidence 57899999999998 4689999999998753 2345556554 42211110
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEE
Q 008621 151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGF 230 (559)
Q Consensus 151 i~~~~~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~i 230 (559)
+..++.+ ++..|.+.++|+.+++.++..+|++.|+++.++++.+.+.
T Consensus 64 --------~~~~~~~-------------------------~~~~~~~~~~~~~~~~~l~~~~l~~~G~~~~~~~~~~~~~ 110 (239)
T 1ybd_A 64 --------AQAGSMD-------------------------RATADYMGMMATVMNALALKDAFETLGIKARVQSALSMQQ 110 (239)
T ss_dssp --------HHHTTSC-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCBSS
T ss_pred --------HHHcCCC-------------------------CccHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeeecccc
Confidence 1223322 2334566778999999999999999999999999877533
Q ss_pred EEecCCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCc
Q 008621 231 ITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (559)
Q Consensus 231 it~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~ 310 (559)
+.. +| .+ . ... .+++.|.|||++||.|. .+++||++|+++|.+|+|++++||||||
T Consensus 111 ~~~-~~-------~~-~----~~~-~ll~~g~ipVv~g~~g~----------~~~~~D~~Aa~lA~~l~Ad~liilTdVd 166 (239)
T 1ybd_A 111 IAE-TY-------AR-P----KAI-QYLEEGKVVIFAAGTGN----------PFFTTDTAAALRGAEMNCDVMLKATNVD 166 (239)
T ss_dssp SCE-EC-------CH-H----HHH-HHHHTTCEEEEESTTSS----------TTCCHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred ccc-ch-------hH-H----HHH-HHHhCCcEEEEECCccC----------CCCCcHHHHHHHHHhcCCCEEEEeeCCC
Confidence 221 11 11 1 122 24578999999986442 1356999999999999999999999999
Q ss_pred ccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCC---------CCCeEEec
Q 008621 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIRR 377 (559)
Q Consensus 311 GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~~ 377 (559)
|||++||+.+|+|++|++++|+|+.++ |+++|||+++++|.++|+|++|.|+++|+ ..||+|.+
T Consensus 167 Gvy~~dp~~~p~a~~i~~i~~~e~~~~---g~~~m~~~a~~~a~~~gv~v~I~~~~~~~~l~~~l~g~~~GT~i~~ 239 (239)
T 1ybd_A 167 GVYTADPKKDPSATRYETITFDEALLK---NLKVMDATAFALCRERKLNIVVFGIAKEGSLKRVITGEDEGTLVHC 239 (239)
T ss_dssp SCBSSCGGGCTTCCBCSEEEHHHHHHT---TCCSSCHHHHHHHHHTTCCEEEECTTSTTHHHHHHHTCSCSEEEEC
T ss_pred ccCCCCCCCCCCCeEccccCHHHHHHh---cccccCHHHHHHHHHcCCcEEEEeCCChhHHHHHHcCCCCCeEEcC
Confidence 999999999999999999999998874 88999999999999999999999998874 46888863
No 9
>2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A*
Probab=99.97 E-value=6e-30 Score=255.75 Aligned_cols=216 Identities=21% Similarity=0.266 Sum_probs=160.7
Q ss_pred cceEEEEeCccccC-------CHHHHHHHHHHHHcCC--CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHH
Q 008621 80 QLTCVMKFGGSSLA-------SAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF 150 (559)
Q Consensus 80 ~~~~V~KFGGsSl~-------~~~~~~~va~iI~~~~--~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~ 150 (559)
++++|+||||+++. +.+.++++++.|.... +.++|+|+|+ |.+.+.+.
T Consensus 8 ~k~iViKlGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vVlVhGg-G~~~~~~~---------------------- 64 (247)
T 2a1f_A 8 YKRILLKLSGEALQGEDGLGIDPAILDRMAVEIKELVEMGVEVSVVLGG-GNLFRGAK---------------------- 64 (247)
T ss_dssp CSEEEEEECGGGGCCTTSSSCCHHHHHHHHHHHHHHHTTTCEEEEEECC-TTTCCCHH----------------------
T ss_pred ccEEEEEEChhhhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-ChHhcchh----------------------
Confidence 67899999999999 5689999999998753 2344555554 55543321
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEE
Q 008621 151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGF 230 (559)
Q Consensus 151 i~~~~~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~i 230 (559)
+.+++. +++..|.+.++|+++++.++..+|++.|+++.++++.+.+.
T Consensus 65 --------~~~~g~-------------------------~~~~~d~~~~~~~~~~~~ll~~~l~~~G~~~~~~~~~~~~~ 111 (247)
T 2a1f_A 65 --------LAKAGM-------------------------NRVVGDHMGMLATVMNGLAMRDSLFRADVNAKLMSAFQLNG 111 (247)
T ss_dssp --------HHHTTC-------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCCTT
T ss_pred --------HHHcCC-------------------------CCCcHHHHHHHHHHHHHHHHHHHHHHcCCCeEEeccccccc
Confidence 112222 23344667788999999999999999999999999877532
Q ss_pred EEecCCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCc
Q 008621 231 ITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (559)
Q Consensus 231 it~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~ 310 (559)
+.+ .| ...+ +. .+++.+.|||++|+. |. .++++|++|+++|.+|+|++++||||||
T Consensus 112 ~~~-~~--------~~~~----~~-~ll~~g~ipVi~~~~------g~----~~~~~D~~Aa~lA~~l~Ad~liilTDVd 167 (247)
T 2a1f_A 112 ICD-TY--------NWSE----AI-KMLREKRVVIFSAGT------GN----PFFTTDSTACLRGIEIEADVVLKATKVD 167 (247)
T ss_dssp TSE-EC--------CHHH----HH-HHHHTTCEEEEESTT------SC----SSCCHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred ccc-hh--------hHHH----HH-HHHhCCCEEEEeCCc------CC----CCCCcHHHHHHHHHhCCCCEEEEEeCCC
Confidence 211 11 1122 22 345789999999843 22 2456999999999999999999999999
Q ss_pred ccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCC---------CCCeEEecC
Q 008621 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIRRS 378 (559)
Q Consensus 311 GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~~~ 378 (559)
|||++||+.+|++++|++++|+|+.++ |+++|||+++.+|.+.|+|++|.|+++|+ ..||+|...
T Consensus 168 Gvy~~dP~~~p~a~~i~~i~~~e~~~~---g~~~m~~~aa~~a~~~gv~v~I~~~~~~~~l~~~l~g~~~GT~~~~~ 241 (247)
T 2a1f_A 168 GVYDCDPAKNPDAKLYKNLSYAEVIDK---ELKVMDLSAFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGTTICEG 241 (247)
T ss_dssp SCBCC-------CCBCSEECHHHHHHT---TCCSSCHHHHHHHHHHTCCEEEEETTSTTHHHHHHTCSCSSEEECCC
T ss_pred cccCCCCCCCCCCeEcccCCHHHHHHc---CccccCHHHHHHHHHcCCcEEEEeCCCchHHHHHHcCCCCceEEeec
Confidence 999999999999999999999999874 89999999999999999999999998763 579998764
No 10
>2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis}
Probab=99.97 E-value=8.8e-30 Score=255.79 Aligned_cols=217 Identities=24% Similarity=0.316 Sum_probs=164.8
Q ss_pred CcceEEEEeCccccCC-------HHHHHHHHHHHHcCC--CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHH
Q 008621 79 KQLTCVMKFGGSSLAS-------AERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELS 149 (559)
Q Consensus 79 ~~~~~V~KFGGsSl~~-------~~~~~~va~iI~~~~--~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~ 149 (559)
..+++|+||||+++.+ .+.++++++.|.... +.++|+|+|| |...+.+.
T Consensus 11 ~~~~iViKiGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vViV~Gg-G~~~~~~~--------------------- 68 (255)
T 2jjx_A 11 PYKRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGG-GNIFRGHL--------------------- 68 (255)
T ss_dssp BCSEEEEEECGGGTSCSSSCSCCHHHHHHHHHHHHHHHTTTCEEEEEECC-TTTCCHHH---------------------
T ss_pred cCCEEEEEECHHHhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECc-hHHHhhhH---------------------
Confidence 3467999999999995 789999999998743 3456777776 55544331
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHH-cCCceEEecccce
Q 008621 150 FVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNK-IGVKARQYDAFDI 228 (559)
Q Consensus 150 ~i~~~~~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~-~Gi~a~~l~~~~~ 228 (559)
++.++.+.. +....+++. ..+++.||+.+|++ .|+++.++++.+.
T Consensus 69 ---------~~~~g~~~~----------------------~~~~~~~~~---~~~~~~ll~~~l~~~~Gi~a~~l~~~~~ 114 (255)
T 2jjx_A 69 ---------AEEWGIDRV----------------------EADNIGTLG---TIINSLMLRGVLTSKTNKEVRVMTSIPF 114 (255)
T ss_dssp ---------HHHTTCCHH----------------------HHHHHHHHH---HHHHHHHHHHHHHHHCSSCEEEEESSCC
T ss_pred ---------HHHcCCCCC----------------------ChHHHhHHH---HHHHHHHHHHHHHhhcCCceEEecHHHc
Confidence 112232210 011123333 36899989999999 9999999999886
Q ss_pred EEEEecCCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEee-
Q 008621 229 GFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWK- 307 (559)
Q Consensus 229 ~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~T- 307 (559)
+++++ ..+... +. .+++.|.|||++| | + .++.++ +|++|+++|.+|+|++++|||
T Consensus 115 ~~v~~---------~~~~~~----~~-~lL~~g~IpVi~g--g-~-g~~~vt------tD~~Aa~lA~~l~Ad~liilT~ 170 (255)
T 2jjx_A 115 NAVAE---------PYIRLR----AV-HHLDNGYIVIFGG--G-N-GQPFVT------TDYPSVQRAIEMNSDAILVAKQ 170 (255)
T ss_dssp CSSSE---------ECCHHH----HH-HHHHTTCEEEEES--T-T-SCSSCC------SHHHHHHHHHHHTCSEEEEEES
T ss_pred CcccC---------cccHHH----HH-HHHhCCcEEEEeC--C-C-CCCccc------hHHHHHHHHHhcCCCEEEEEeC
Confidence 43322 112222 22 2457899999998 3 2 123332 699999999999999999999
Q ss_pred CCcccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCC---------CCCeEEecC
Q 008621 308 DVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIRRS 378 (559)
Q Consensus 308 DV~GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~~~ 378 (559)
||||||++||+++|++++|++|+|+|+.++ |.++|||.|++++.+.|+|++|.|+++|+ ..||+|.++
T Consensus 171 DVdGVy~~dP~~~p~a~~i~~is~~e~~~~---G~~~m~~~a~~~a~~~gi~v~I~~~~~~~~l~~~l~g~~~GT~I~~~ 247 (255)
T 2jjx_A 171 GVDGVFTSDPKHNKSAKMYRKLNYNDVVRQ---NIQVMDQAALLLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLINDD 247 (255)
T ss_dssp SCCSCBSSCTTTCSSCCBCSEEEHHHHHHT---TCCSSCHHHHHHHHHHTCCEEEEETTSTTHHHHHHBTCCCSEEEESS
T ss_pred CcCeeECCCCCCCCCCeEeeEecHHHHHHc---CCccCHHHHHHHHHHcCCeEEEEeCCCchHHHHHhcCCCCceEEecC
Confidence 999999999999999999999999988875 99999999999999999999999999984 689999874
No 11
>1gs5_A Acetylglutamate kinase; carbamate kinase, amino acid kinase, arginine biosynthesis, phosphoryl group transfer, protein crystallography; HET: NLG ANP; 1.5A {Escherichia coli} SCOP: c.73.1.2 PDB: 1gsj_A* 1oh9_A* 1oha_A* 1ohb_A* 2wxb_A 2x2w_A* 3t7b_A*
Probab=99.97 E-value=1.3e-29 Score=254.99 Aligned_cols=234 Identities=18% Similarity=0.258 Sum_probs=178.3
Q ss_pred cceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHH
Q 008621 80 QLTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157 (559)
Q Consensus 80 ~~~~V~KFGGsSl~~~~~~~~va~iI~~~--~~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 157 (559)
|+++|+|||||++.+++.++++++.|... ...+++|||||+|+.||.|++....... ..
T Consensus 2 m~~~ViK~GGs~l~~~~~~~~~~~~i~~l~~~g~~~vVvV~Ggg~~~~~ll~~~g~~~~-------~~------------ 62 (258)
T 1gs5_A 2 MNPLIIKLGGVLLDSEEALERLFSALVNYRESHQRPLVIVHGGGCVVDELMKGLNLPVK-------KK------------ 62 (258)
T ss_dssp CCCEEEEECGGGGGCHHHHHHHHHHHHHHHTTCCSCEEEEECCHHHHHHHHHHHTCCCC-------EE------------
T ss_pred CccEEEEEChhHhCChHHHHHHHHHHHHHHHcCCCeEEEEeCCcHHHHHHHHHcCCCcc-------ee------------
Confidence 56799999999999999999999999764 2356799999999999999875321100 00
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHH-HhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEecCC
Q 008621 158 TVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF 236 (559)
Q Consensus 158 ~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~i-ls~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~ 236 (559)
++++ ..+....+.+ ..+++.+|+.+++ .|++.|+++.++++.+.+++++.+.
T Consensus 63 -----------------------~glr---~t~~~~l~~~~~~l~~~~n~~l~~-~l~~~G~~a~~l~~~~~~~~~~~~~ 115 (258)
T 1gs5_A 63 -----------------------NGLR---VTPADQIDIITGALAGTANKTLLA-WAKKHQIAAVGLFLGDGDSVKVTQL 115 (258)
T ss_dssp -----------------------TTEE---CBCHHHHHHHHHHHHTHHHHHHHH-HHHHTTCCEEEECTTGGGCEEEEEC
T ss_pred -----------------------CCEe---eCCHHHHHHHHHHHhccchHHHHH-HHHHCCCCeEEEeecCCCEEEEEEc
Confidence 0000 0011111111 2346689998886 5799999999999999888887532
Q ss_pred C----C-ceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcc
Q 008621 237 T----N-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG 311 (559)
Q Consensus 237 ~----~-a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~G 311 (559)
. . +++...+...+.. +++++.|||++|| |.+ .+|++++++ +|++|+.+|.+|+|+ +++||||||
T Consensus 116 ~~d~~~~g~~~~~~~~~i~~-----ll~~g~ipVi~~~-g~~-~~g~~~~~~---~D~~Aa~lA~~l~Ad-li~ltdV~G 184 (258)
T 1gs5_A 116 DEELGHVGLAQPGSPKLINS-----LLENGYLPVVSSI-GVT-DEGQLMNVN---ADQAATALAATLGAD-LILLSDVSG 184 (258)
T ss_dssp CGGGBSBEEEEECCCHHHHH-----HHHTTCEEEECSE-EEC-TTSCEEECC---HHHHHHHHHHHHTCE-EEEEESSSS
T ss_pred CCCCCCcCceeEECHHHHHH-----HHHCCCEEEEeCC-cCC-CCCcEEEec---HHHHHHHHHHHhCCc-EEEEeCCCc
Confidence 2 1 2344445544432 3578999999998 777 589999996 999999999999999 999999999
Q ss_pred cccCCCCCCCCCccccccCHHHHHHHHHcCC-----CcchHhHHHHHHhCCCCEEEecCCCCC---------CCCeEEe
Q 008621 312 VLTCDPNIHPHAKPVPYLTFDEAAELAYFGA-----QVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIR 376 (559)
Q Consensus 312 V~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga-----~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~ 376 (559)
||++| +++|++++|+|+.+++..|. ++.|+.|++++.+.++|++|.|+++|+ ..||+|.
T Consensus 185 v~~~d------~~~i~~i~~~e~~~l~~~~~~~gGm~~k~~~a~~~~~~~~~~v~I~~~~~~~~l~~~~~~~~~GT~i~ 257 (258)
T 1gs5_A 185 ILDGK------GQRIAEMTAAKAEQLIEQGIITDGMIVKVNAALDAARTLGRPVDIASWRHAEQLPALFNGMPMGTRIL 257 (258)
T ss_dssp CBCTT------SCBCCEECHHHHHHHHHTTCSCTHHHHHHHHHHHHHHHHTSCEEEEESSCGGGHHHHHTTCCSSEEEC
T ss_pred eECCC------CCCCcccCHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCEEEEecCCCchHHHHHhcCCCCcEEEe
Confidence 99986 57899999999999987655 677788999999999999999988763 5688885
No 12
>2ap9_A NAG kinase, acetylglutamate kinase, AGK; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.80A {Mycobacterium tuberculosis} SCOP: c.73.1.2
Probab=99.96 E-value=4.4e-29 Score=256.33 Aligned_cols=240 Identities=20% Similarity=0.267 Sum_probs=184.3
Q ss_pred cceEEEEeCccccCCHHHHHHHHHHHHcCC-CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHHH
Q 008621 80 QLTCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (559)
Q Consensus 80 ~~~~V~KFGGsSl~~~~~~~~va~iI~~~~-~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 158 (559)
++++|+||||+++.+++.++++++.|.... ....+|||+++|..++.+++...
T Consensus 25 ~k~iViKlGGs~l~~~~~~~~~~~~i~~l~~~G~~vViVhGgG~~i~~~~~~~~-------------------------- 78 (299)
T 2ap9_A 25 GKVVVVKYGGNAMTDDTLRRAFAADMAFLRNCGIHPVVVHGGGPQITAMLRRLG-------------------------- 78 (299)
T ss_dssp TCEEEEEECTHHHHSHHHHHHHHHHHHHHHTTTCEEEEEECCSHHHHHHHHHHT--------------------------
T ss_pred CCeEEEEECchhhCCchHHHHHHHHHHHHHHCCCcEEEEECCcHHHHHHHHHcC--------------------------
Confidence 467999999999999999999999988753 23345555567777777765321
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHH--HhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEecCC
Q 008621 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL--VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF 236 (559)
Q Consensus 159 ~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~i--ls~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~ 236 (559)
.+. ++.+++ +..++...|.+ ++.|+ ++.. +..+|++.|++++++++.+.+++++..+
T Consensus 79 -----~~~-----------~~~~g~---R~t~~~~l~~~~~~~~G~-l~~~-l~~~L~~~g~~av~lt~~d~~~~~~~~~ 137 (299)
T 2ap9_A 79 -----IEG-----------DFKGGF---RVTTPEVLDVARMVLFGQ-VGRE-LVNLINAHGPYAVGITGEDAQLFTAVRR 137 (299)
T ss_dssp -----CCC-----------CCSSSS---CCBCHHHHHHHHHHHHHT-HHHH-HHHHHTTSSSCEEEEETTGGGCEEEEEC
T ss_pred -----Ccc-----------cccCCc---ccCCHHHHHHHHHHHhhH-HHHH-HHHHHHhCCCCceEechhHCCEEEEEec
Confidence 100 001111 22345555554 34687 5666 6889999999999999999888876543
Q ss_pred C------------CceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEE
Q 008621 237 T------------NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQ 304 (559)
Q Consensus 237 ~------------~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~ 304 (559)
+ .+++...+...+.+ +++.|.|||++|| |.+ ..|+.++++ +|++|+++|.+|+|++++
T Consensus 138 ~~~~~~~~~d~g~~g~v~~v~~~~i~~-----lL~~g~IpVv~~v-~~~-~~G~~~~l~---~D~~Aa~lA~~l~Ad~li 207 (299)
T 2ap9_A 138 SVTVDGVATDIGLVGDVDQVNTAAMLD-----LVAAGRIPVVSTL-APD-ADGVVHNIN---ADTAAAAVAEALGAEKLL 207 (299)
T ss_dssp CBCSSSCCBCCBSEEEEEEECHHHHHH-----HHHTTCEEEEESE-EEC-TTCCEEEEC---HHHHHHHHHHHTTCSEEE
T ss_pred ccccccccCCCCcceeEEEecHHHHHH-----HHhCCCeEEECCe-eEC-CCCCEEEEC---HHHHHHHHHHHcCCCEEE
Confidence 2 12333344443332 4578999999997 877 479999996 999999999999999999
Q ss_pred EeeCCcccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHh--HHHHHHhCCCC-EEEecCCCCC----------CC
Q 008621 305 VWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQ--SMRPAREGDIP-VRVKNSYNPN----------AP 371 (559)
Q Consensus 305 i~TDV~GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~--a~~~a~~~~Ip-v~I~n~~~p~----------~~ 371 (559)
|||||||||++||+ ++++|++|+|+|+.+++.+|...|+|| ++..+.+.|+| ++|.|+++|+ +.
T Consensus 208 ilTDVdGV~~~dP~---~~~~i~~is~~e~~~l~~~~~ggM~~Kl~aa~~a~~~gv~~v~I~~g~~p~~ll~~l~~~~~~ 284 (299)
T 2ap9_A 208 MLTDIDGLYTRWPD---RDSLVSEIDTGTLAQLLPTLELGMVPKVEACLRAVIGGVPSAHIIDGRVTHCVLVELFTDAGT 284 (299)
T ss_dssp EEESSSSEETTTTC---TTCEESEEEHHHHHHHGGGSCTTTHHHHHHHHHHHHHTCSEEEEEETTSTTHHHHHHHSCCCC
T ss_pred EEeCChhhhcCCCC---CCcChhhcCHHHHHHHHHhhcCchHHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHhcCCCC
Confidence 99999999999998 589999999999999999999999997 88899999999 9999998875 46
Q ss_pred CeEEecCC
Q 008621 372 GTLIRRSR 379 (559)
Q Consensus 372 GT~I~~~~ 379 (559)
||+|.+..
T Consensus 285 GT~i~~~~ 292 (299)
T 2ap9_A 285 GTKVVRGE 292 (299)
T ss_dssp SEEEECCC
T ss_pred cEEEecCC
Confidence 99998754
No 13
>4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A*
Probab=99.96 E-value=9.5e-29 Score=246.10 Aligned_cols=213 Identities=22% Similarity=0.289 Sum_probs=160.3
Q ss_pred cceEEEEeCccccC-------CHHHHHHHHHHHHcCC--CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHH
Q 008621 80 QLTCVMKFGGSSLA-------SAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF 150 (559)
Q Consensus 80 ~~~~V~KFGGsSl~-------~~~~~~~va~iI~~~~--~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~ 150 (559)
++++|.||||+++. |++.++++++.|.... +.++|+|+|+ |.+.+.+...
T Consensus 7 ~k~iViKiGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vvlV~gG-G~~~~g~~~~-------------------- 65 (240)
T 4a7w_A 7 NKRVLVKFSGEALAGDNQFGIDIHVLDHIAKEIKSLVENDIEVGIVIGG-GNIIRGVSAA-------------------- 65 (240)
T ss_dssp CCEEEEEECGGGGGTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECC-TTTC--------------------------
T ss_pred CCEEEEEECHHHcCCCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEEECC-cHHHhHhHHH--------------------
Confidence 56899999999998 7899999999998753 3455666655 5555332210
Q ss_pred HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceE
Q 008621 151 VKDLHHRTVDELG-IDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIG 229 (559)
Q Consensus 151 i~~~~~~~~~~L~-~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~ 229 (559)
.+| . .....|++-...+.+|+.+++.+|+++|++++.+++.+++
T Consensus 66 ----------~~G~~-------------------------~~~~~~~~~~la~~~n~~l~~~~l~~~G~~av~lt~~d~~ 110 (240)
T 4a7w_A 66 ----------QGGII-------------------------RRTSGDYMGMLATVINAVAMQEALEHIGLDTRVQSAIEIK 110 (240)
T ss_dssp -------------CC-------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCCT
T ss_pred ----------hcCCC-------------------------CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEecHHHcC
Confidence 011 1 1112233322456789999999999999999999988863
Q ss_pred EEEecCCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCC
Q 008621 230 FITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDV 309 (559)
Q Consensus 230 iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV 309 (559)
..+ + ..+...+. .+++++.|||++|+.|. . .+.+|++|+++|.+|+|+.+++||||
T Consensus 111 ~~~-------~--~~~~~~i~-----~lL~~g~ipVi~~~~g~------~----~~~~D~~Aa~lA~~l~Ad~li~lTdV 166 (240)
T 4a7w_A 111 EIC-------E--SYIYRKAI-----RHLEKGRVVIFGAGTGN------P----FFTTDTAATLRAIEIGSDLIIKATKV 166 (240)
T ss_dssp TTS-------E--ECCHHHHH-----HHHHTTCEEEEESTTSC------T----TSCHHHHHHHHHHHTTCSEEEEEESS
T ss_pred ccc-------C--cCcHHHHH-----HHHHCCCEEEEeCCCCC------C----CCChHHHHHHHHHHcCCCEEEEccCC
Confidence 211 1 12333332 23578999999996442 1 13499999999999999999999999
Q ss_pred cccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCC----------CCCeEE
Q 008621 310 DGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN----------APGTLI 375 (559)
Q Consensus 310 ~GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~----------~~GT~I 375 (559)
||||++||+++|+|+++++++|+|+.++ |.++|||+|+.+|.++|+|++|.|+++|+ +.||.|
T Consensus 167 dGvy~~dp~~~p~a~~i~~i~~~e~~~~---g~~~m~~~a~~~a~~~gv~v~I~~g~~~~~l~~~l~g~~g~GT~i 239 (240)
T 4a7w_A 167 DGIYDKDPNKFKDAKKLDTLSYNDALIG---DIEVMDDTAISLAKDNKLPIVVCNMFKKGNLLQVIKHQQGVFSMV 239 (240)
T ss_dssp SSEESSCTTTCTTCCEESEECHHHHHHS---SCCSSCHHHHHHHHHTTCCEEEEESSSTTHHHHHHHHSCSSCEEE
T ss_pred CceECCCCCCCCCCeEcceecHHHHHhc---CccccHHHHHHHHHHCCCeEEEECCCCccHHHHHHCCCCCCceee
Confidence 9999999999999999999999998774 89999999999999999999999999874 458876
No 14
>1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3
Probab=99.96 E-value=1.1e-28 Score=247.32 Aligned_cols=218 Identities=20% Similarity=0.233 Sum_probs=167.3
Q ss_pred cceEEEEeCccccC-------CHHHHHHHHHHHHcCC-CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHH
Q 008621 80 QLTCVMKFGGSSLA-------SAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFV 151 (559)
Q Consensus 80 ~~~~V~KFGGsSl~-------~~~~~~~va~iI~~~~-~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i 151 (559)
++++|+||||+++. +.+.++++++.|.... ....+|||++.|...+.+.
T Consensus 7 ~k~iViKlGGs~l~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgG~~~~g~~----------------------- 63 (252)
T 1z9d_A 7 YQRILIKLSGEALAGEKGVGIDIPTVQAIAKEIAEVHVSGVQIALVIGGGNLWRGEP----------------------- 63 (252)
T ss_dssp CSEEEEEECGGGGTCSSSSSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCHHH-----------------------
T ss_pred CCEEEEEEchHHccCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCChHhccch-----------------------
Confidence 46899999999999 4689999999998753 2334555554465544431
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEE
Q 008621 152 KDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231 (559)
Q Consensus 152 ~~~~~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~ii 231 (559)
+++++.+ ++..|.+..+++.+++.++..+|.+.|+++.++++.+.+.+
T Consensus 64 -------~~~lg~~-------------------------~~~~~~~~~~~~~~~~~ll~~al~~~G~~~~~~~~~~~~~~ 111 (252)
T 1z9d_A 64 -------AADAGMD-------------------------RVQADYTGMLGTVMNALVMADSLQHYGVDTRVQTAIPMQNV 111 (252)
T ss_dssp -------HHHHTCC-------------------------HHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEESSCBTTT
T ss_pred -------HHHcCCC-------------------------CCchHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeccccccc
Confidence 0112222 22234556678899999999999999999999988765322
Q ss_pred EecCCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEee-CCc
Q 008621 232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWK-DVD 310 (559)
Q Consensus 232 t~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~T-DV~ 310 (559)
++ .| .+ . .+ ..+++.|.|||++|+. |. .++++|++|+.+|.+|+|++|+||| |||
T Consensus 112 ~~-~~-------~~-~----~~-~~lL~~g~IpVi~~~~------g~----~~~~~D~~Aa~lA~~l~Ad~LiilT~DVd 167 (252)
T 1z9d_A 112 AE-PY-------IR-G----RA-LRHLEKNRIVVFGAGI------GS----PYFSTDTTAALRAAEIEADAILMAKNGVD 167 (252)
T ss_dssp BE-EC-------CH-H----HH-HHHHHTTCEEEEESTT------SC----TTCCHHHHHHHHHHHTTCSEEEEEESSCC
T ss_pred cC-cc-------hH-H----HH-HHHHhCCCEEEEeCCc------CC----CCCChHHHHHHHHHhcCCCEEEEecCCCC
Confidence 11 11 11 2 22 2346789999999843 31 3567999999999999999999999 999
Q ss_pred ccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCC---------CCCeEEecCC
Q 008621 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIRRSR 379 (559)
Q Consensus 311 GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~~~~ 379 (559)
|||++||+.+|++++|++|+|+|+.+ +|+++||++++.+|.+.|+|++|.|+++|+ ..||+|.+..
T Consensus 168 Gvy~~dP~~~~~a~~i~~i~~~e~~~---~~~~~mk~~aa~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~ 242 (252)
T 1z9d_A 168 GVYNADPKKDANAVKFDELTHGEVIK---RGLKIMDATASTLSMDNDIDLVVFNMNEAGNIQRVVFGEHIGTTVSNKV 242 (252)
T ss_dssp SCBSSCTTTCTTCCBCSEEEHHHHHT---TTCCCSCHHHHHHHHHTTCEEEEEETTSTTHHHHHHTTCCCSEEEECC-
T ss_pred eeeCCCCCCCCCCeEeeEecHHHHHh---ccccccCHHHHHHHHHcCCeEEEEeCCCchHHHHHHcCCCCceEEecCC
Confidence 99999999999999999999999876 588999999999999999999999998885 6799998764
No 15
>3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} SCOP: c.73.1.0 PDB: 3ek5_A
Probab=99.96 E-value=3.9e-28 Score=242.10 Aligned_cols=215 Identities=21% Similarity=0.278 Sum_probs=163.9
Q ss_pred cceEEEEeCccccCC-------HHHHHHHHHHHHcCC--CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHH
Q 008621 80 QLTCVMKFGGSSLAS-------AERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF 150 (559)
Q Consensus 80 ~~~~V~KFGGsSl~~-------~~~~~~va~iI~~~~--~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~ 150 (559)
++++|.|+||+++.+ .+.++++++.|.... +.++++|+|+ |.+..... .
T Consensus 9 ~~riViKlGGs~l~~~~~~~~~~~~i~~la~~i~~l~~~G~~vviV~gG-G~~~~~~~-~-------------------- 66 (243)
T 3ek6_A 9 YRRILLKLSGEALMGDGDYGIDPKVINRLAHEVIEAQQAGAQVALVIGG-GNIFRGAG-L-------------------- 66 (243)
T ss_dssp CSEEEEEECGGGGTTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECS-TTTSCSTT-T--------------------
T ss_pred CcEEEEEEchhhccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-CHHHHHHH-H--------------------
Confidence 467999999999986 689999999998753 3455666664 44321110 0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEE
Q 008621 151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGF 230 (559)
Q Consensus 151 i~~~~~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~i 230 (559)
..++.+ ....|++.....++|+.++..+|++.|++++.+++.+++.
T Consensus 67 ---------~~~g~~-------------------------~~~~d~~g~l~t~~N~~~l~~al~~~G~~a~~~~~~~~~~ 112 (243)
T 3ek6_A 67 ---------AASGMD-------------------------RVTGDHMGMLATVINALAMQDALEKLGAKVRVMSAIKIND 112 (243)
T ss_dssp ---------SCSSSC-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCBTT
T ss_pred ---------HHcCCC-------------------------CCCHHHHHHHHHHHHHHHHHHHHHHcCCCeEEechhhcCc
Confidence 012221 2223444344568999999999999999999999988643
Q ss_pred EEecCCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCc
Q 008621 231 ITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (559)
Q Consensus 231 it~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~ 310 (559)
+++ + .+...+ . .++++|.|||++|+.| . .++++|++|+++|.+|+|+.|++|||||
T Consensus 113 v~~-~--------~~~~~~----~-~lL~~g~IpVv~~~~g------~----~~~~~D~~Aa~lA~~l~Ad~li~lTdVd 168 (243)
T 3ek6_A 113 VCE-D--------FIRRRA----I-RHLEKGRIAIFAAGTG------N----PFFTTDSGAALRAIEIGADLLLKATKVD 168 (243)
T ss_dssp TBE-E--------CCHHHH----H-HHHHTTCEEEEESTTS------S----TTCCHHHHHHHHHHHHTCSEEEEECSSS
T ss_pred ccC-c--------CCHHHH----H-HHHHCCcEEEEECCCC------C----CcCChHHHHHHHHHHcCCCEEEEEeCCC
Confidence 322 1 122222 2 2457899999999543 2 1356999999999999999999999999
Q ss_pred ccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCC---------CCCeEEec
Q 008621 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIRR 377 (559)
Q Consensus 311 GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~~ 377 (559)
|||++||+++|+|+++++++|+|+.+ .|.++||++|++.|.++|+|++|.|+++|+ ..||+|.+
T Consensus 169 Gvy~~dp~~~p~a~~i~~i~~~e~~~---~g~~~~~~~a~~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~~ 241 (243)
T 3ek6_A 169 GVYDKDPKKHSDAVRYDSLTYDEVIM---QGLEVMDTAAFALARDSDLPLRIFGMSEPGVLLRILHGAQIGTLVQG 241 (243)
T ss_dssp SCBSSCGGGCTTCCBCSEECHHHHHH---HTCCSSCHHHHHHHHHTTCCEEEECCCSTTHHHHHHTTCCCSEEECC
T ss_pred ccCCCCCCCCCCceecccccHHHHHh---CCchhHHHHHHHHHHHCCCeEEEEcCCCccHHHHHHCCCCCceEEee
Confidence 99999999999999999999999877 488999999999999999999999998874 57999976
No 16
>2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A
Probab=99.95 E-value=2.7e-28 Score=256.59 Aligned_cols=228 Identities=20% Similarity=0.296 Sum_probs=141.4
Q ss_pred cceEEEEeCccccCC------HHHHHHHHHHHHcCC--CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHH
Q 008621 80 QLTCVMKFGGSSLAS------AERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFV 151 (559)
Q Consensus 80 ~~~~V~KFGGsSl~~------~~~~~~va~iI~~~~--~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i 151 (559)
.+++|.||||+++.+ .+.++++++.|.... +.++|+|+|++ +.--+.
T Consensus 4 ~k~iVIKiGGs~l~~~~~~~~~~~l~~la~~Ia~l~~~G~~vVlV~gGg--i~~g~~----------------------- 58 (367)
T 2j5v_A 4 SQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHRIVIVTSGA--IAAGRE----------------------- 58 (367)
T ss_dssp CCEEEEEECHHHHTTTSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCH--HHHHHH-----------------------
T ss_pred CCEEEEEECcHHhcCCCCCcCHHHHHHHHHHHHHHHhCCCcEEEEEcCH--HHHHHH-----------------------
Confidence 367999999999998 589999999988753 33555555543 211111
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEE
Q 008621 152 KDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231 (559)
Q Consensus 152 ~~~~~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~ii 231 (559)
.|+.+. +..+....+++++.||...+.++..+|+++|+++. ++ ++
T Consensus 59 ---------~lg~~~--------------------~~~~l~~~qa~aavGq~~l~~~~~~~l~~~G~~~~-----qv-ll 103 (367)
T 2j5v_A 59 ---------HLGYPE--------------------LPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVG-----QM-LL 103 (367)
T ss_dssp ---------HHTSCC--------------------CCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEE-----EE-EE
T ss_pred ---------HcCCCC--------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCceE-----EE-EE
Confidence 122111 12234567778899999999999999999999985 33 55
Q ss_pred EecCCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceee--ecCCcchhHHHHHHHHcCcCcEEEeeCC
Q 008621 232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITT--LGRGGSDLTATTIGKALGLQEIQVWKDV 309 (559)
Q Consensus 232 t~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~t--lgRgGSD~tAa~lA~~L~A~~l~i~TDV 309 (559)
+.++|.+. ..+.+..+.+. .|++.|.|||+.+ +|.+.+ +.+|+||++|+++|.+|+|+.++|||||
T Consensus 104 t~~d~~~~----~r~~n~~~~i~-~LL~~g~IPIv~e-------nd~v~~~el~~gd~D~lAa~vA~~l~Ad~LiilTDV 171 (367)
T 2j5v_A 104 TRADMEDR----ERFLNARDTLR-ALLDNNVVPVINE-------NDAVATAEIKVGDNDNLSALAAILAGADKLLLLTDQ 171 (367)
T ss_dssp CGGGGSSH----HHHHHHHHHHH-HHHHTTCEEEEEE-------CTTSCCGGGCCCSHHHHHHHHHHHHTCSEEEEEECC
T ss_pred ecccccCc----eEEEhHHHHHH-HHHHCCCEEEECC-------CCceecccccCCCHHHHHHHHHHhcCCCEEEEeecC
Confidence 66655432 12222223343 3568899999953 233444 7799999999999999999999999999
Q ss_pred cccccCCCCCCCCCccccccCH--HHHHHHHH-----cCCCcchH--hHHHHHHhCCCCEEEecCCCCC---------CC
Q 008621 310 DGVLTCDPNIHPHAKPVPYLTF--DEAAELAY-----FGAQVLHP--QSMRPAREGDIPVRVKNSYNPN---------AP 371 (559)
Q Consensus 310 ~GV~taDP~~v~~a~~i~~ls~--~Ea~eLa~-----~Ga~vlhp--~a~~~a~~~~Ipv~I~n~~~p~---------~~ 371 (559)
||||++||+.+|++++|+++++ +|+.+++. +|.++||| +++.+|.++|+|++|.|+++|+ ..
T Consensus 172 dGvy~~dP~~~p~a~~I~~i~~~~~e~~~l~~~~~s~~gtGgM~~Kl~Aa~~a~~~Gv~v~I~~g~~~~~L~~~l~g~~~ 251 (367)
T 2j5v_A 172 KGLYTADPRSNPQAELIKDVYGIDDALRAIAGDSVSGLGTGGMSTKLQAADVACRAGIDTIIAAGSKPGVIGDVMEGISV 251 (367)
T ss_dssp ------------------------------------------CHHHHHHHHHHHHTTCEEEEEETTSTTHHHHHHHTCCC
T ss_pred CceECCCCCCCCCCeEeeeeCCCHHHHHHHhhccCCCcCcCccHHHHHHHHHHHHcCCCEEEEcCCCchHHHHHhcCCCC
Confidence 9999999999999999999999 99999976 48899999 5899999999999999999986 78
Q ss_pred CeEEecCC
Q 008621 372 GTLIRRSR 379 (559)
Q Consensus 372 GT~I~~~~ 379 (559)
||+|.+..
T Consensus 252 GT~i~~~~ 259 (367)
T 2j5v_A 252 GTLFHAQA 259 (367)
T ss_dssp SEEECCCS
T ss_pred cEEEEcCc
Confidence 99998753
No 17
>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis}
Probab=99.95 E-value=6.6e-28 Score=244.54 Aligned_cols=215 Identities=21% Similarity=0.326 Sum_probs=157.5
Q ss_pred cceEEEEeCccccC------CHHHHHHHHHHHHcCC-CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHH
Q 008621 80 QLTCVMKFGGSSLA------SAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVK 152 (559)
Q Consensus 80 ~~~~V~KFGGsSl~------~~~~~~~va~iI~~~~-~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~ 152 (559)
.+++|+|+||+++. +.+.++++++.|.... ....|||||+.|.+...+...
T Consensus 50 ~krIViKlGGs~L~~~~~~ld~~~i~~la~~I~~l~~~G~~vviV~GgG~i~~g~~~~---------------------- 107 (281)
T 3nwy_A 50 YSRVLLKLGGEMFGGGQVGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQ---------------------- 107 (281)
T ss_dssp CSEEEEEECGGGGGTTSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCTTC---CCTT----------------------
T ss_pred CcEEEEEEchhhccCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECChhHhhhHHHH----------------------
Confidence 56799999999998 5789999999998753 233444444335444332100
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEE
Q 008621 153 DLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFIT 232 (559)
Q Consensus 153 ~~~~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit 232 (559)
.++. .....|++..+++++|+.++...|++.|++++.+.+.+.+.++
T Consensus 108 --------~~gl-------------------------~~~~~d~~g~lat~~n~~~l~~~L~~~Gi~a~~~~~~~~~~~~ 154 (281)
T 3nwy_A 108 --------QLGM-------------------------ERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAITMGQVA 154 (281)
T ss_dssp --------TTTC-------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCCGGGS
T ss_pred --------hcCC-------------------------CccchhHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccccccc
Confidence 0111 2223455656688999999999999999999888876654333
Q ss_pred ecCCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCccc
Q 008621 233 TDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGV 312 (559)
Q Consensus 233 ~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV 312 (559)
+.|. + .+... ++++|.|||+.|+.| . .++++|++|+++|.+|+||.+++|||||||
T Consensus 155 -~~~~-------~-----~~~l~-lL~~g~IpVv~g~~g------~----~~~~~D~~Aa~lA~~l~Ad~LiilTDVdGV 210 (281)
T 3nwy_A 155 -EPYL-------P-----LRAVR-HLEKGRVVIFGAGMG------L----PYFSTDTTAAQRALEIGADVVLMAKAVDGV 210 (281)
T ss_dssp -EECC-------H-----HHHHH-HHHTTCEEEEESTTS------S----TTCCHHHHHHHHHHHTTCSEEEEEESSSSC
T ss_pred -cccc-------h-----HHHHH-HHHcCCeEEEECCCC------C----CCCCHHHHHHHHHHHcCCCEEEEeeccCcc
Confidence 1221 1 12222 457899999998533 2 136799999999999999999999999999
Q ss_pred ccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCC---------CCCeEEe
Q 008621 313 LTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIR 376 (559)
Q Consensus 313 ~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~ 376 (559)
|++||+.+|+|++|++++|+|+.+ .|.+++|++|+..|.+.|+|++|.|+++|+ ..||+|.
T Consensus 211 y~~dP~~~p~A~~i~~is~~e~~~---~g~~v~k~~Aa~~a~~~Gi~v~I~~g~~p~~l~~~l~Ge~~GT~i~ 280 (281)
T 3nwy_A 211 FAEDPRVNPEAELLTAVSHREVLD---RGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVT 280 (281)
T ss_dssp BCC-----CCCCBCSEECHHHHHT---TTCCSSCHHHHHHHHTTTCCEEEEETTSTTHHHHHHHTCCCSEEEC
T ss_pred ccCCCCcCCCCeEcccccHHHHHH---cCCCcHHHHHHHHHHHCCCeEEEecCCCchHHHHHHcCCCCceEEe
Confidence 999999999999999999999755 588999999999999999999999998874 5788885
No 18
>2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group transfer, pyrimidine biosynthesis, transferase; 2.40A {Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A* 2bmu_A* 2bri_A*
Probab=99.95 E-value=1.2e-27 Score=238.66 Aligned_cols=207 Identities=20% Similarity=0.248 Sum_probs=158.2
Q ss_pred cceEEEEeCccccC----CHHHHHHHHHHHHcCCCCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHH
Q 008621 80 QLTCVMKFGGSSLA----SAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLH 155 (559)
Q Consensus 80 ~~~~V~KFGGsSl~----~~~~~~~va~iI~~~~~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~ 155 (559)
.+++|+||||+++. +.+.++++++.|....+...+|+|++.|..++.++..
T Consensus 19 ~k~iViKlGGs~l~~~~~~~~~i~~~~~~i~~l~~g~~vViV~GgG~~~~~~~~~------------------------- 73 (244)
T 2brx_A 19 HMRIVFDIGGSVLVPENPDIDFIKEIAYQLTKVSEDHEVAVVVGGGKLARKYIEV------------------------- 73 (244)
T ss_dssp CCEEEEEECHHHHCSSSCCHHHHHHHHHHHHHHHHHSEEEEEECCHHHHHHHHHH-------------------------
T ss_pred ccEEEEEechhhcCCCCCCHHHHHHHHHHHHHHhCCCeEEEEECccHHHhchHHH-------------------------
Confidence 46799999999999 7799999999998753233455555445555554321
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEecC
Q 008621 156 HRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD 235 (559)
Q Consensus 156 ~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~ 235 (559)
+++++. +....+.+.+.|+.+++.|++.+|+++|+++ +
T Consensus 74 ---~~~~gl-------------------------~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~------~-------- 111 (244)
T 2brx_A 74 ---AEKFNS-------------------------SETFKDFIGIQITRANAMLLIAALREKAYPV------V-------- 111 (244)
T ss_dssp ---HHTTTC-------------------------CHHHHHHHHHHHHHHHHHHHHHHHGGGBCSS------C--------
T ss_pred ---HHHcCC-------------------------CcccHHHHHHHHHHHHHHHHHHHHHHcCCCC------C--------
Confidence 222332 3355667777799999999998999999754 0
Q ss_pred CCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcccccC
Q 008621 236 FTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTC 315 (559)
Q Consensus 236 ~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~ta 315 (559)
..+...+. .+++.+.|||++| |. + .+.+|++|+++|.+|+|++++|||||||||++
T Consensus 112 -------~~~~~~i~-----~lL~~g~IpVi~g--g~--~--------~~~~D~~Aa~lA~~l~Ad~liilTDVdGVy~~ 167 (244)
T 2brx_A 112 -------VEDFWEAW-----KAVQLKKIPVMGG--TH--P--------GHTTDAVAALLAEFLKADLLVVITNVDGVYTA 167 (244)
T ss_dssp -------BCSHHHHH-----HHHHTTCBCEECC--CS--T--------TCCHHHHHHHHHHHTTCSEEEEECSSSSCBSS
T ss_pred -------cCCHHHHH-----HHHhCCCEEEEcC--CC--C--------CCCchHHHHHHHHHcCCCEEEEEeCCCccCCC
Confidence 01222222 2457899999988 31 1 23499999999999999999999999999999
Q ss_pred CCCCCCCCccccccCHHHHHHHHHc-CC-----CcchHhHHHHHHhCCCCEEEecCCCCC---------CCCeEEec
Q 008621 316 DPNIHPHAKPVPYLTFDEAAELAYF-GA-----QVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIRR 377 (559)
Q Consensus 316 DP~~v~~a~~i~~ls~~Ea~eLa~~-Ga-----~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~~ 377 (559)
||+.+|++++|++++|+|+.+++.. |. .++++.|++++.+.++|++|.|+++|+ ..||+|.+
T Consensus 168 dP~~~p~a~~i~~i~~~e~~~~~~~~g~~~g~m~~~~~~A~~~~~~~~~~v~I~ng~~~~~l~~~l~g~~~GT~i~~ 244 (244)
T 2brx_A 168 DPKKDPTAKKIKKMKPEELLEIVGKGIEKAGSSSVIDPLAAKIIARSGIKTIVIGKEDAKDLFRVIKGDHNGTTIEP 244 (244)
T ss_dssp CTTTCTTCCBCSEECHHHHHHHHHC--------CCSCHHHHHHHHHHTCCEEEECHHHHTCHHHHHTTCSSSEEECC
T ss_pred CCCCCCCCeEeeEECHHHHHHHHhccCCCCCCCcchHHHHHHHHHHCCCeEEEEeCCChhHHHHHHcCCCCceEecC
Confidence 9999999999999999999999654 55 889999999999999999999877653 46888853
No 19
>2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii}
Probab=99.95 E-value=2.1e-27 Score=241.14 Aligned_cols=216 Identities=22% Similarity=0.266 Sum_probs=162.6
Q ss_pred eEEEEeCccccCC--HHHHHHHHHHHHcCCCCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHHHH
Q 008621 82 TCVMKFGGSSLAS--AERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (559)
Q Consensus 82 ~~V~KFGGsSl~~--~~~~~~va~iI~~~~~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (559)
++|+||||| +.+ .+.++++++.|........+|+||+.|...+.++++.
T Consensus 41 ~iVIKiGGs-l~~~~~~~l~~l~~~I~~l~~G~~vVlV~GGg~~~~~~~~~~---------------------------- 91 (276)
T 2ogx_A 41 LQVVKIGGR-VMDRGADAILPLVEELRKLLPEHRLLILTGAGVRARHVFSVG---------------------------- 91 (276)
T ss_dssp EEEEEECHH-HHTTTHHHHHHHHHHHHHHTTTCEEEEEECCTHHHHHHHHHH----------------------------
T ss_pred eEEEEEChh-hcCCCHHHHHHHHHHHHHHhCCCeEEEEECcHHHHHHHHhcc----------------------------
Confidence 899999999 888 6899999999987543334444454444444333210
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEecCCCCc
Q 008621 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNA 239 (559)
Q Consensus 160 ~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a 239 (559)
.+.+. +....+.+...++.++..+++.+++..|++++.+.
T Consensus 92 ~~~gl-------------------------~~~~l~~v~~~~~~~n~~l~~~ll~~~g~~~v~~~--------------- 131 (276)
T 2ogx_A 92 LDLGL-------------------------PVGSLAPLAASEAGQNGHILAAMLASEGVSYVEHP--------------- 131 (276)
T ss_dssp HHTTC-------------------------CHHHHHHHHHHHHHHHHHHHHHHHGGGTCCBCCHH---------------
T ss_pred CcCCC-------------------------CHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc---------------
Confidence 01221 23455666666789999999888888888653211
Q ss_pred eeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCce-eeecCCcchhHHHHHHHHcCcCcEEEeeCCcccccCCCC
Q 008621 240 DILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAI-TTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPN 318 (559)
Q Consensus 240 ~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~-~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~ 318 (559)
...+.+. .+++.|.|||++||.+.+. .+.+ ..+.+++||++|+++|.+|+|+.+++||||||||++||+
T Consensus 132 --------~~~~~i~-~lL~~g~IpVi~~~~~~~~-~e~~G~~~~~~~~D~~Aa~lA~~l~Ad~LiilTDVdGvy~~dP~ 201 (276)
T 2ogx_A 132 --------TVADQLA-IHLSATRAVVGSAFPPYHH-HEFPGSRIPPHRADTGAFLLADAFGAAGLTIVENVDGIYTADPN 201 (276)
T ss_dssp --------HHHHHHH-HHHHHSSEEEEESSCTTGG-GCCSSSSSCSSCHHHHHHHHHHHHTCSEEEEEESSSSEESSCTT
T ss_pred --------ChHHHHH-HHHhCCCEEEEcCCccccc-ccccCCcCCCCChHHHHHHHHHHcCCCEEEEEeCCCccCCCCCC
Confidence 0112232 2457789999999977652 1221 233567799999999999999999999999999999999
Q ss_pred --CCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHH--hCCCCEEEecCCCC---------CCCCeEEecC
Q 008621 319 --IHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAR--EGDIPVRVKNSYNP---------NAPGTLIRRS 378 (559)
Q Consensus 319 --~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~--~~~Ipv~I~n~~~p---------~~~GT~I~~~ 378 (559)
.+|++++|++++++|+.+++ |.++|||++..++. +.++|++|.|+++| +..||+|.+.
T Consensus 202 ~~~~~~a~~i~~i~~~e~~~~~--g~ggM~~K~~~~~~~~~~~~~v~I~~g~~~~~l~~~l~g~~~GT~i~~~ 272 (276)
T 2ogx_A 202 GPDRGQARFLPETSATDLAKSE--GPLPVDRALLDVMATARHIERVQVVNGLVPGRLTAALRGEHVGTLIRTG 272 (276)
T ss_dssp STTGGGCCEESEEEHHHHHTSC--SCCSSCHHHHHHHHTCSSCCEEEEEETTSTTHHHHHHTTCCCSEEEECS
T ss_pred ccCCCCCeEcceeCHHHHHHHh--CcCChHHHHHHHHHHhcCCCeEEEEECCCccHHHHHHcCCCCceEEccC
Confidence 89999999999999999887 89999999999988 66889999999988 5689999865
No 20
>2ij9_A Uridylate kinase; structural genomics, protein structure initiative, P nysgxrc; 2.90A {Archaeoglobus fulgidus} SCOP: c.73.1.3
Probab=99.95 E-value=4.5e-27 Score=230.59 Aligned_cols=202 Identities=21% Similarity=0.290 Sum_probs=155.3
Q ss_pred ceEEEEeCccccCC-HHHHHHHHHHHHcCC-CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHHH
Q 008621 81 LTCVMKFGGSSLAS-AERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (559)
Q Consensus 81 ~~~V~KFGGsSl~~-~~~~~~va~iI~~~~-~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 158 (559)
+++|+||||+++.+ .+.++++++.|.... +.++|+|+|+ |..++.++...
T Consensus 1 ~~iViK~GGs~l~~~~~~~~~~~~~i~~l~~g~~vvlV~gg-G~~~~~~~~~~--------------------------- 52 (219)
T 2ij9_A 1 MKVVLSLGGSVLSNESEKIREFAKTIESVAQQNQVFVVVGG-GKLAREYIKSA--------------------------- 52 (219)
T ss_dssp CEEEEEECSSTTTTCHHHHHHHHHHHHHHHHHSEEEEEECC-HHHHHHHHHHH---------------------------
T ss_pred CeEEEEeChhhhCChHHHHHHHHHHHHHHcCCCEEEEEECc-chHhcchHHHH---------------------------
Confidence 46899999999999 899999999998643 3455666655 77887765432
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEecCCCC
Q 008621 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN 238 (559)
Q Consensus 159 ~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~ 238 (559)
++++. ++...|.+.+.++.+++.|++.+|+.. +. +
T Consensus 53 -~~~g~-------------------------~~~~l~~~~~~~~~~~~~l~~~~~~~~-~~-------~----------- 87 (219)
T 2ij9_A 53 -RELGA-------------------------SETFCDYIGIAATRLNAMLLISAIPSA-AK-------K----------- 87 (219)
T ss_dssp -HHTTC-------------------------CHHHHHHHHHHHHHHHHHHHHHHCTTB-CS-------S-----------
T ss_pred -HHcCC-------------------------CccchHHHHHHHHHHHHHHHHHHHHHh-cC-------C-----------
Confidence 22332 345567777778899999998876553 11 0
Q ss_pred ceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcccccCCCC
Q 008621 239 ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPN 318 (559)
Q Consensus 239 a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~ 318 (559)
...+...+. .+++.+.|||++| |. . .|++|++|+.+|.+|+|+.+++||||||||++||+
T Consensus 88 ---~~~~~~~i~-----~ll~~g~ipVi~~--g~------~----~~~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~~dP~ 147 (219)
T 2ij9_A 88 ---VPVDFMEAE-----ELSKLYRVVVMGG--TF------P----GHTTDATAALLAEFIKADVFINATNVDGVYSADPK 147 (219)
T ss_dssp ---CCSSHHHHH-----HHHTTCSEEEECC--CS------S----SSCTHHHHHHHHHHTTCSEEEEEESSSSCBCSSCS
T ss_pred ---CcCCHHHHH-----HHHHCCCEEEEeC--CC------C----CCCchHHHHHHHHHcCCCeEEEeeCCCceecCCCC
Confidence 112333332 2467899999988 31 1 23599999999999999999999999999999999
Q ss_pred CCCCCccccccCHHHHHHHHHc-CC-----CcchHhHHHHHHhCCCCEEEecCCCC---------CCCCeEEe
Q 008621 319 IHPHAKPVPYLTFDEAAELAYF-GA-----QVLHPQSMRPAREGDIPVRVKNSYNP---------NAPGTLIR 376 (559)
Q Consensus 319 ~v~~a~~i~~ls~~Ea~eLa~~-Ga-----~vlhp~a~~~a~~~~Ipv~I~n~~~p---------~~~GT~I~ 376 (559)
.+|++++|++++|+|+.+++.. |+ .++|+.|++++.+.++|++|.|+ +| +..||+|.
T Consensus 148 ~~~~a~~i~~i~~~e~~~~~~~~g~~~g~~~~~~~~a~~~~~~~~~~v~I~~g-~~~~l~~~~~g~~~GT~i~ 219 (219)
T 2ij9_A 148 SDTSAVKYDRLSPQQLVEIVSRSSAKAGTNVVIDLLAAKIIERSKIKTYVILG-TPENIMKAVKGEAVGTVIA 219 (219)
T ss_dssp SSSSCCBCSEECHHHHHHHTCC-----CCCCCSCHHHHHHHHHHTCCEEEEEC-CHHHHHHHHTTCCCSEEEC
T ss_pred CCCCCeEeeeeCHHHHHHHHhcCCCCCCCccchHHHHHHHHHHCCCeEEEEEC-CHhHHHHHHcCCCCCeEeC
Confidence 9999999999999999999765 55 89999999999999999999998 65 35688874
No 21
>2va1_A Uridylate kinase; UMPK, transferase, pyrimidine biosynthesis, amino acid kinase family; 2.50A {Ureaplasma parvum}
Probab=99.95 E-value=1e-26 Score=233.63 Aligned_cols=215 Identities=21% Similarity=0.247 Sum_probs=152.7
Q ss_pred cceEEEEeCccccCC-------HHHHHHHHHHHHcCCCCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHH
Q 008621 80 QLTCVMKFGGSSLAS-------AERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVK 152 (559)
Q Consensus 80 ~~~~V~KFGGsSl~~-------~~~~~~va~iI~~~~~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~ 152 (559)
++++|.||||+++.+ .+.++++++.|........+|+|++.|...+.+.
T Consensus 24 ~k~iVIKiGGs~l~~~~~~~~~~~~i~~~a~~i~~l~~g~~vVlVhGgG~~~~~~~------------------------ 79 (256)
T 2va1_A 24 KQRIVIKISGACLKQNDSSIIDFIKINDLAEQIEKISKKYIVSIVLGGGNIWRGSI------------------------ 79 (256)
T ss_dssp CSEEEEEECGGGGCSSTTCSSCHHHHHHHHHHHHHHTTTSEEEEEECCTTTCCHHH------------------------
T ss_pred cCEEEEEechhhccCCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEECCcHHhccch------------------------
Confidence 467999999999994 5789999998887533334555554466655542
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEE
Q 008621 153 DLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFIT 232 (559)
Q Consensus 153 ~~~~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit 232 (559)
++.++.+. ...|....++..+++.++..+|++.|++++.+.+.+.
T Consensus 80 ------~~~~g~~~-------------------------~~~~~~~~l~~~~n~~l~~~~l~~~Gi~a~~~~~~t~---- 124 (256)
T 2va1_A 80 ------AKELDMDR-------------------------NLADNMGMMATIINGLALENALNHLNVNTIVLSAIKC---- 124 (256)
T ss_dssp ------HHHTTCCH-------------------------HHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEESSCC----
T ss_pred ------HHHcCCCC-------------------------CchhHHHHHHHHHHHHHHHHHHHHcCCCeEEEeeeec----
Confidence 11223221 1122333445588899889999999999988876542
Q ss_pred ecCCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeC-Ccc
Q 008621 233 TDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKD-VDG 311 (559)
Q Consensus 233 ~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TD-V~G 311 (559)
+.+.+.. .+ .... .|++.|.|||++|+. |. .++++|++|+++|.+|+|++++|||| |||
T Consensus 125 -~~~~~~~---~~-----~~~~-~lL~~g~IpVi~~~~------g~----~~~~~D~~Aa~lA~~l~Ad~LiilTD~VdG 184 (256)
T 2va1_A 125 -DKLVHES---SA-----NNIK-KAIEKEQVMIFVAGT------GF----PYFTTDSCAAIRAAETESSIILMGKNGVDG 184 (256)
T ss_dssp -TTTCEEC---CH-----HHHH-HHHHTTCEEEEESTT------SS----SSCCHHHHHHHHHHHHTCSEEEEEESSCCS
T ss_pred -ccccchh---hH-----HHHH-HHHhCCcEEEEECCC------CC----CCCChhHHHHHHHHhCCCCEEEEeecccCe
Confidence 2332211 11 1222 356789999998832 32 35779999999999999999999999 999
Q ss_pred cccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCC---------CCCeEEe
Q 008621 312 VLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIR 376 (559)
Q Consensus 312 V~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~ 376 (559)
||++||+.+|++++|++++++|+.++ |.++||++++..|.+.|+|++|.|+++|+ ..||+|.
T Consensus 185 Vy~~dP~~~p~a~~i~~is~~e~~~~---~~~~mk~~aa~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~ 255 (256)
T 2va1_A 185 VYDSDPKINPNAQFYEHITFNMALTQ---NLKVMDATALALCQENNINLLVFNIDKPNAIVDVLEKKNKYTIVS 255 (256)
T ss_dssp BCSCC--------CBSEEEHHHHHHH---TCCSSCHHHHHHHHHTTCEEEEEESSSTTHHHHHHTTCSCEEEEE
T ss_pred EEcCCCCCCCCCEEccEEcHHHHHHh---ccCCccHHHHHHHHHCCCeEEEEeCCCchHHHHHHcCCCCeEEEe
Confidence 99999999999999999999999888 56888999999999999999999998773 4588875
No 22
>2rd5_A Acetylglutamate kinase-like protein; protein-protein complex, regulation of arginine biosynthesis nitrogen metabolism, kinase, transferase, transcription; HET: ARG ADP NLG ATP; 2.51A {Arabidopsis thaliana}
Probab=99.94 E-value=4.2e-27 Score=241.44 Aligned_cols=238 Identities=16% Similarity=0.257 Sum_probs=174.6
Q ss_pred cceEEEEeCccccCCHHHHHHHHHHHHcCC-CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHHH
Q 008621 80 QLTCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (559)
Q Consensus 80 ~~~~V~KFGGsSl~~~~~~~~va~iI~~~~-~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 158 (559)
++++|+||||+++.+++.++++++.|.... ....+|||+++|...+.+++...
T Consensus 36 ~k~iVIKlGGs~l~~~~~~~~~~~~i~~l~~~G~~vViVhGgG~~i~~~~~~~~-------------------------- 89 (298)
T 2rd5_A 36 GKTIVVKYGGAAMTSPELKSSVVSDLVLLACVGLRPILVHGGGPDINRYLKQLN-------------------------- 89 (298)
T ss_dssp TCEEEEEECTHHHHCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHTT--------------------------
T ss_pred CCEEEEEECchhhCChhHHHHHHHHHHHHHHCCCCEEEEECCcHHHHHHHHHcC--------------------------
Confidence 367999999999999999999999887653 23334445556666676654321
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHH--HhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEecC-
Q 008621 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL--VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD- 235 (559)
Q Consensus 159 ~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~i--ls~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~- 235 (559)
.+. ++.++++ ..++...|.+ ++.|+. +. .++..|++.|++++++++.+.+++++.+
T Consensus 90 -----~~~-----------~~~~g~R---~t~~~~l~~~~~~~~G~~-n~-~l~~~l~~~g~~a~~l~~~~~~~l~~~~~ 148 (298)
T 2rd5_A 90 -----IPA-----------EFRDGLR---VTDATTMEIVSMVLVGKV-NK-NLVSLINAAGATAVGLSGHDGRLLTARPV 148 (298)
T ss_dssp -----CCC-----------CEETTEE---CBCHHHHHHHHHHHHHTH-HH-HHHHHHHHTTSCEEEEETTGGGCEEEEEC
T ss_pred -----CCc-----------cccCCcc---cCCHHHHHHHHHHHhchH-HH-HHHHHHHhCCCCccccChHHCCEEEEEeC
Confidence 100 0011111 2234444443 225754 54 4778899999999999998877777654
Q ss_pred -----CCC-ceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCC
Q 008621 236 -----FTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDV 309 (559)
Q Consensus 236 -----~~~-a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV 309 (559)
++. +++...+...+++ ++++|.|||++|+ +.+ ..|+.++++ +|++|+++|.+|+|++++|||||
T Consensus 149 ~~~~d~g~~g~v~~v~~~~i~~-----lL~~g~IpVi~~v-~~~-~~G~~~~i~---~D~~Aa~lA~~l~Ad~LiilTdV 218 (298)
T 2rd5_A 149 PNSAQLGFVGEVARVDPSVLRP-----LVDYGYIPVIASV-AAD-DSGQAYNIN---ADTVAGELAAALGAEKLILLTDV 218 (298)
T ss_dssp TTHHHHBSEEEEEEECGGGHHH-----HHHTTCEEEEESE-EEC-TTSCEEEEC---HHHHHHHHHHHHTCSEEEEEESS
T ss_pred CccccCCcceEEEEECHHHHHH-----HHhCCCEEEEcCe-eEC-CCCCEEEEC---HHHHHHHHHHHcCCCEEEEEeCC
Confidence 333 2443444443432 3568999999996 777 478899896 99999999999999999999999
Q ss_pred cccccCCCCCCCCCccccccCHHHHHHHHHcC--CCcchHh--HHHHHHhCCCC-EEEecCCCCC----------CCCeE
Q 008621 310 DGVLTCDPNIHPHAKPVPYLTFDEAAELAYFG--AQVLHPQ--SMRPAREGDIP-VRVKNSYNPN----------APGTL 374 (559)
Q Consensus 310 ~GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~G--a~vlhp~--a~~~a~~~~Ip-v~I~n~~~p~----------~~GT~ 374 (559)
||||++||+ | +++|++|+++|+.+++..| ...|+|| ++..+.++|+| ++|.|+..|+ ..||+
T Consensus 219 dGVy~~dp~--~-a~~i~~is~~e~~~~~~~g~~~gGM~~Kl~aa~~a~~~gv~~v~I~~g~~~~~ll~~l~~~~~~GT~ 295 (298)
T 2rd5_A 219 AGILENKED--P-SSLIKEIDIKGVKKMIEDGKVAGGMIPKVKCCIRSLAQGVKTASIIDGRRQHSLLHEIMSDEGAGTM 295 (298)
T ss_dssp SSEESSSSC--T-TSEECEEEHHHHHHHHHTTSSCTTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHSSSCSEEE
T ss_pred cCeecCCCC--C-CCCcccCCHHHHHHHHHCCCCCCchHHHHHHHHHHHHcCCCeEEEecCCCCchHHHHHhcCCCCceE
Confidence 999999998 4 9999999999999998864 4679986 88889999999 9999987764 35788
Q ss_pred Eec
Q 008621 375 IRR 377 (559)
Q Consensus 375 I~~ 377 (559)
|.+
T Consensus 296 i~~ 298 (298)
T 2rd5_A 296 ITG 298 (298)
T ss_dssp EEC
T ss_pred EeC
Confidence 753
No 23
>2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid kinase, phosphoryl group transfer, arginine metabolism, transferase; HET: ARG NLG; 2.75A {Thermotoga maritima} SCOP: c.73.1.2
Probab=99.94 E-value=7.6e-27 Score=237.68 Aligned_cols=235 Identities=23% Similarity=0.282 Sum_probs=171.9
Q ss_pred cceEEEEeCccccCCHHHHHHHHHHHHcCC-CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHHH
Q 008621 80 QLTCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (559)
Q Consensus 80 ~~~~V~KFGGsSl~~~~~~~~va~iI~~~~-~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 158 (559)
++++|+||||+++.+++.++++++.|.... ....+|||+++|..++.+++...
T Consensus 21 ~~~iViKlGGs~l~~~~~~~~~~~~i~~l~~~G~~vVlVhGgG~~i~~~~~~~~-------------------------- 74 (282)
T 2bty_A 21 GKTFVIKFGGSAMKQENAKKAFIQDIILLKYTGIKPIIVHGGGPAISQMMKDLG-------------------------- 74 (282)
T ss_dssp TCEEEEEECSHHHHSHHHHHHHHHHHHHHHHTTCEEEEEECCSHHHHHHHHHHT--------------------------
T ss_pred CCeEEEEECchhhCChhHHHHHHHHHHHHHHCCCcEEEEECCcHHHHHHHHHcC--------------------------
Confidence 367999999999999999999999888753 23345555557777777664321
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHH--HhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEec--
Q 008621 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL--VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD-- 234 (559)
Q Consensus 159 ~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~i--ls~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~-- 234 (559)
.+. ++.+++ +..++...|.+ +..|+. +. .+...|++.|++++.+++.+.+++++.
T Consensus 75 -----~~~-----------~~~~g~---r~t~~~~l~~~~~~~~G~~-~~-~l~~~l~~~g~~a~~l~~~~~~~l~~~~~ 133 (282)
T 2bty_A 75 -----IEP-----------VFKNGH---RVTDEKTMEIVEMVLVGKI-NK-EIVMNLNLHGGRAVGICGKDSKLIVAEKE 133 (282)
T ss_dssp -----CCC-----------CBSSSS---BCBCHHHHHHHHHHHHHTH-HH-HHHHHHHTTTCCEEEEETTGGGSEEEEEC
T ss_pred -----CCc-----------cccCCc---ccCCHHHHHHHHHHHhhHH-HH-HHHHHHHhCCCCceecChhhCCEEEEecC
Confidence 000 001111 12234444432 225765 54 477899999999999998877666654
Q ss_pred ----CCCC-ceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCC
Q 008621 235 ----DFTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDV 309 (559)
Q Consensus 235 ----~~~~-a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV 309 (559)
+++. +++...+...+.+ +++.|.|||++|| +.+ ..|+.++++ +|++|+++|.+|+|++++|||||
T Consensus 134 ~~~~d~g~~g~v~~~~~~~i~~-----ll~~g~IpVi~~v-~~~-~~G~~~~~~---~D~~Aa~lA~~l~Ad~liilTDV 203 (282)
T 2bty_A 134 TKHGDIGYVGKVKKVNPEILHA-----LIENDYIPVIAPV-GIG-EDGHSYNIN---ADTAAAEIAKSLMAEKLILLTDV 203 (282)
T ss_dssp CTTCCCBSBEEEEEECTHHHHH-----HHHTTCEEEEESE-EEC-SSSCEEECC---HHHHHHHHHHHHTCSEEEEEESS
T ss_pred CcccCCCcceEEEEecHHHHHH-----HHHCCCEEEECCC-ccC-CCCCEEEEC---HHHHHHHHHHHcCCCEEEEEeCC
Confidence 3443 3444455443332 3568999999997 777 478888886 99999999999999999999999
Q ss_pred cccccCCCCCCCCCccccccCHHHHHHHHHcCC--CcchH--hHHHHHHhCCCC-EEEecCCCCC----------CCCeE
Q 008621 310 DGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGA--QVLHP--QSMRPAREGDIP-VRVKNSYNPN----------APGTL 374 (559)
Q Consensus 310 ~GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga--~vlhp--~a~~~a~~~~Ip-v~I~n~~~p~----------~~GT~ 374 (559)
||||++ | ++|++++|+|+.+++..|. ..|.| +++..+.++|+| ++|.|+..|+ ..||+
T Consensus 204 dGvy~~-~------~~i~~i~~~e~~~~~~~g~~~gGM~~K~~aa~~a~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~ 276 (282)
T 2bty_A 204 DGVLKD-G------KLISTLTPDEAEELIRDGTVTGGMIPKVECAVSAVRGGVGAVHIINGGLEHAILLEIFSRKGIGTM 276 (282)
T ss_dssp SSCEET-T------EECCEECHHHHHHHHTTTCSCTTHHHHHHHHHHHHHTTCSCEEEEETTSTTHHHHHHSSSSCSSEE
T ss_pred CCeecC-c------hhhhhCCHHHHHHHHHcCCCCCcHHHHHHHHHHHHHhCCCeEEEecCCCCchHHHHHhcCCCCceE
Confidence 999997 3 8999999999999998754 45765 589999999998 9999987764 47999
Q ss_pred EecC
Q 008621 375 IRRS 378 (559)
Q Consensus 375 I~~~ 378 (559)
|.+.
T Consensus 277 i~~~ 280 (282)
T 2bty_A 277 IKEL 280 (282)
T ss_dssp ECCC
T ss_pred EEeC
Confidence 9764
No 24
>2egx_A Putative acetylglutamate kinase; struc genomics, NPPSFA, national project on protein structural AN functional analyses; 1.92A {Thermus thermophilus} PDB: 3u6u_A
Probab=99.94 E-value=5.1e-26 Score=230.09 Aligned_cols=236 Identities=17% Similarity=0.166 Sum_probs=164.6
Q ss_pred eEEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHHHH
Q 008621 82 TCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (559)
Q Consensus 82 ~~V~KFGGsSl~~~~~~~~va~iI~~~~--~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (559)
++|.||||+++. .++++++.|.... +.++|+|+|++..+ +.+++..
T Consensus 1 ~iViKlGGs~l~---~~~~~~~~i~~l~~~G~~vViVhGgg~~~-~~~~~~~---------------------------- 48 (269)
T 2egx_A 1 MIVVKVGGAEGI---NYEAVAKDAASLWKEGVKLLLVHGGSAET-NKVAEAL---------------------------- 48 (269)
T ss_dssp CEEEEECCSTTC---CHHHHHHHHHHHHHHTCCEEEECCCHHHH-HHHHHHT----------------------------
T ss_pred CEEEEECHHHHH---HHHHHHHHHHHHHHCCCeEEEEECChHHH-HHHHHHc----------------------------
Confidence 479999999997 6777887776642 34566666654333 4443321
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhh--hHHHHHHHHHHHHHHcCCceEEecccceEEEEecCCC
Q 008621 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSF--GECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFT 237 (559)
Q Consensus 160 ~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~--GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~ 237 (559)
+.+.. ..++.+|+ ..+..++...+.+.+. |+. ...+...|+++|+++..+++.|.+++++...+
T Consensus 49 ---~~~~~--------~~~~~~g~-~~rvt~~~~l~~~~~~~~G~i--~~~l~~~l~~~G~~a~~l~~~d~~~~~~~~~~ 114 (269)
T 2egx_A 49 ---GHPPR--------FLTHPGGQ-VSRLTDRKTLEIFEMVYCGLV--NKRLVELLQKEGANAIGLSGLDGRLFVGRRKT 114 (269)
T ss_dssp ---TCCCC--------C--------CCCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHTTCCEEEEETTGGGCEEECBC-
T ss_pred ---CCccc--------cccccCCc-cCcCCCHHHHHHHHHHHHhHH--HHHHHHHHHHCCCCeEEeCCCCccceeeeecc
Confidence 11100 00112222 0122345666777665 444 46688899999999999999997777765432
Q ss_pred ----------------C-ceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCc
Q 008621 238 ----------------N-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGL 300 (559)
Q Consensus 238 ----------------~-a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A 300 (559)
. +++...+...+. .+++.|.|||+++ ++.+ .+|++++. ++|++|+++|.+|+|
T Consensus 115 ~~~~~~~~~~~~~D~g~~g~i~~v~~~~i~-----~ll~~g~ipVi~~-v~~~-~~g~~~~~---~~D~~Aa~lA~~l~A 184 (269)
T 2egx_A 115 AVKYVENGKVKVHRGDYTGTVEEVNKALLD-----LLLQAGYLPVLTP-PALS-YENEAINT---DGDQIAALLATLYGA 184 (269)
T ss_dssp ---------------CCEECCCEECHHHHH-----HHHHTTCEEEEEC-CEEE-TTSCEEEE---CHHHHHHHHHHHHTC
T ss_pred cccccccccccCCcCCCCCCceEECHHHHH-----HHHHCCCEEEEcC-cEEC-CCCCEEEe---CHHHHHHHHHHHcCC
Confidence 1 233334443332 3457899999996 7777 47887744 499999999999999
Q ss_pred CcEEEeeCCcccccCCCCCCCCCccccccCHHHHH--HHHHcCCCcchHh--HHHHHHhCCC-CEEEecCCCCC------
Q 008621 301 QEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAA--ELAYFGAQVLHPQ--SMRPAREGDI-PVRVKNSYNPN------ 369 (559)
Q Consensus 301 ~~l~i~TDV~GV~taDP~~v~~a~~i~~ls~~Ea~--eLa~~Ga~vlhp~--a~~~a~~~~I-pv~I~n~~~p~------ 369 (559)
+++++||||||||+ || .|++++|++++++|+. +|..++...|+|+ ++..+.++|+ |++|.|+++|+
T Consensus 185 d~li~lTdVdGv~~-dp--~~~a~~i~~i~~~e~~~~~l~~~~~ggm~~Kl~aa~~a~~~gv~~v~I~~g~~~~~l~~~l 261 (269)
T 2egx_A 185 EALVYLSNVPGLLA-RY--PDEASLVREIPVERIEDPEYLALAQGRMKRKVMGAVEAVKGGVKRVVFADGRVENPIRRAL 261 (269)
T ss_dssp SEEEEEESSSSCBC---------CBCCEECHHHHHCHHHHTTSCHHHHHHHHHHHHHHHTTCSCEEEEESSSSSHHHHHH
T ss_pred CEEEEEeCchhhhc-CC--CCCccccccCCHHHhhHHHhcCCCCCchHHHHHHHHHHHHcCCCeEEEEeCCCchHHHHHh
Confidence 99999999999999 99 3899999999999999 9988899999995 8899999999 99999998885
Q ss_pred -CCCeEEe
Q 008621 370 -APGTLIR 376 (559)
Q Consensus 370 -~~GT~I~ 376 (559)
+.||+|.
T Consensus 262 ~g~GT~i~ 269 (269)
T 2egx_A 262 SGEGTVVR 269 (269)
T ss_dssp TTCSEEEC
T ss_pred CCCCeEEC
Confidence 4688873
No 25
>2ako_A Glutamate 5-kinase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: ADP; 2.20A {Campylobacter jejuni} SCOP: c.73.1.3
Probab=99.94 E-value=1.1e-26 Score=232.60 Aligned_cols=215 Identities=18% Similarity=0.208 Sum_probs=153.8
Q ss_pred ceEEEEeCccccC-----CHHHHHHHHHHHHcCC-CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHH
Q 008621 81 LTCVMKFGGSSLA-----SAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDL 154 (559)
Q Consensus 81 ~~~V~KFGGsSl~-----~~~~~~~va~iI~~~~-~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~ 154 (559)
+++|+||||+++. +.+.++++++.|.... ..++|+|+|+ | +...+.+
T Consensus 2 k~iViKlGGs~l~~~~~~~~~~~~~~~~~i~~l~~~~~vVlVhgG-g-~~~~~~~------------------------- 54 (251)
T 2ako_A 2 KRIVVKVGSHVISEENTLSFERLKNLVAFLAKLMEKYEVILVTSA-A-ISAGHTK------------------------- 54 (251)
T ss_dssp CEEEEEECHHHHBCSSSBCHHHHHHHHHHHHHHHHHSEEEEEECC-H-HHHHHHH-------------------------
T ss_pred CEEEEEeCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECC-H-HHHHHHH-------------------------
Confidence 5699999999999 8899999999988752 2344455443 3 3222211
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEec
Q 008621 155 HHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD 234 (559)
Q Consensus 155 ~~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~ 234 (559)
++.+. ......+.+.+.|+....+++..+|+++|+++..+ .++.+
T Consensus 55 -------~g~~~----------------------~~~~~~~~l~~~~q~~l~~~~~~~l~~~G~~~~~i------~~~~~ 99 (251)
T 2ako_A 55 -------LDIDR----------------------KNLINKQVLAAIGQPFLISVYNELLAKFNKLGGQI------LLTGK 99 (251)
T ss_dssp -------CCCCS----------------------SSHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEE------EECTG
T ss_pred -------hCCcc----------------------CCchHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEE------Eeccc
Confidence 12111 01223467888999999999999999999997632 34444
Q ss_pred CCCCceeeecchHHHHH-HHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcccc
Q 008621 235 DFTNADILEATYPAVAK-RLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVL 313 (559)
Q Consensus 235 ~~~~a~i~~~~~~~i~~-~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~ 313 (559)
+|... + ..+.. .....+++.|.|||++|+-+.. .++. .+|++|++|+++|.+|+|++++|||||||||
T Consensus 100 ~~~~~-~-----~~~~~~~~i~~ll~~g~ipVi~~~d~v~--~~~~---~~~~~D~~Aa~lA~~l~Ad~liilTdVdGVy 168 (251)
T 2ako_A 100 DFDSR-K-----ATKHAKNAIDMMINLGILPIINENDATA--IEEI---VFGDNDSLSAYATHFFDADLLVILSDIDGFY 168 (251)
T ss_dssp GGGCH-H-----HHHHHHHHHHHHHHTTCEEEEEECTTTC--CHHH---HBTTTHHHHHHHHHHTTCSEEEEEESSCSCB
T ss_pred hhcCc-c-----eEehHHHHHHHHHHCCCEEEEeCCCcee--ecce---eecCchHHHHHHHHhcCCCEEEEEeCCCcee
Confidence 44221 1 11211 2333456889999998752221 1222 4678999999999999999999999999999
Q ss_pred cCCCCCCCCCccccccCHH--HHHHHHH-----cCCCcchH--hHHHHHHhCCCCEEEecCCCC
Q 008621 314 TCDPNIHPHAKPVPYLTFD--EAAELAY-----FGAQVLHP--QSMRPAREGDIPVRVKNSYNP 368 (559)
Q Consensus 314 taDP~~v~~a~~i~~ls~~--Ea~eLa~-----~Ga~vlhp--~a~~~a~~~~Ipv~I~n~~~p 368 (559)
++||+++|++++|+++|++ |+.+++. +|...|+| +++.++.++|+|++|.|+++|
T Consensus 169 ~~dP~~~~~a~~i~~i~~~~~e~~~~~~~~~~~~~~ggm~~k~~aa~~a~~~gv~v~I~~g~~~ 232 (251)
T 2ako_A 169 DKNPSEFSDAKRLEKITHIKEEWLQATIKTGSEHGTGGIVTKLKAAKFLLEHNKKMFLASGFDL 232 (251)
T ss_dssp SSCTTTCTTCCBCCEESCCCGGGC---------CBSCHHHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred eCCCCCCCCCeEeeEeccchHHHHHHhcccCCCCccCchHHHHHHHHHHHHCCCeEEEEeCCCh
Confidence 9999999999999999999 9999976 67786765 599999999999999998776
No 26
>2v5h_A Acetylglutamate kinase; amino-acid biosynthesis, transcription regulation, transfera cyanobacteria, transcription; HET: NLG; 2.75A {Synechococcus elongatus} PDB: 2jj4_A*
Probab=99.93 E-value=5.2e-26 Score=235.54 Aligned_cols=238 Identities=19% Similarity=0.297 Sum_probs=175.0
Q ss_pred cceEEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHH
Q 008621 80 QLTCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157 (559)
Q Consensus 80 ~~~~V~KFGGsSl~~~~~~~~va~iI~~~~--~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 157 (559)
++++|+||||+++.+++.++++++.|.... +.++|||+|+ |...+.+++.
T Consensus 49 ~k~iVIKlGGs~l~~~~~~~~l~~~i~~l~~~G~~vVlVhGg-G~~i~~~~~~--------------------------- 100 (321)
T 2v5h_A 49 GRTVVVKYGGAAMKQEELKEAVMRDIVFLACVGMRPVVVHGG-GPEINAWLGR--------------------------- 100 (321)
T ss_dssp TCEEEEEECTHHHHSHHHHHHHHHHHHHHHHTTCEEEEEECC-HHHHHHHHHH---------------------------
T ss_pred CCeEEEEECchhhCCchHHHHHHHHHHHHHHCCCEEEEEECC-HHHHHHHHHH---------------------------
Confidence 467999999999999999999998887643 3355555554 5555555432
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHH--HhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEec-
Q 008621 158 TVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL--VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD- 234 (559)
Q Consensus 158 ~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~i--ls~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~- 234 (559)
++.+. ++.+|+ +..++...|.+ ++.|+. +.. +...|+.+|++++.+++.+.+++++.
T Consensus 101 ----~g~~~-----------~~~~g~---Rvt~~~~l~~~~~~~~G~i-n~~-l~~~L~~~g~~a~gl~~~~a~~l~a~~ 160 (321)
T 2v5h_A 101 ----VGIEP-----------QFHNGL---RVTDADTMEVVEMVLVGRV-NKD-IVSRINTTGGRAVGFCGTDGRLVLARP 160 (321)
T ss_dssp ----TTCCC-----------CBSSSS---BCBCHHHHHHHHHHHHHTH-HHH-HHHHHHHHTCCEEEECTTGGGSEEEEE
T ss_pred ----cCCCc-----------cccCCc---ccCCHHHHHHHHHHHhChH-HHH-HHHHHHhCCCCeeeeChhhccEEEeec
Confidence 11111 001111 11234555554 335744 654 77789999999999998876667664
Q ss_pred ----CCCC-ceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCC
Q 008621 235 ----DFTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDV 309 (559)
Q Consensus 235 ----~~~~-a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV 309 (559)
+++. .++...+...+.+ +++.|.|||+++ ++.+ ..|+..+++ +|++|+++|.+|+|++|+|+|||
T Consensus 161 ~~~~d~g~~g~v~~v~~~~i~~-----lL~~g~IpVi~~-v~~~-~~G~~~~i~---~D~~Aa~lA~~l~Ad~LiilTDV 230 (321)
T 2v5h_A 161 HDQEGIGFVGEVNSVNSEVIEP-----LLERGYIPVISS-VAAD-ENGQSFNIN---ADTVAGEIAAALNAEKLILLTDT 230 (321)
T ss_dssp CSSCSSBSBEEEEEECGGGTHH-----HHHTTCEEEEES-EEEC-TTSCEEECC---HHHHHHHHHHHTTCSEEEEEESS
T ss_pred CCCccccccceeEEecHHHHHH-----HHHCCCeEEEeC-ceEC-CCCCEEEeC---HHHHHHHHHHHcCCCEEEEeeCC
Confidence 4554 3444444443332 357899999996 5777 478776555 99999999999999999999999
Q ss_pred cccccCCCCCCCCCccccccCHHHHHHHHHcC--CCcchH--hHHHHHHhCCCC-EEEecCCCCC----------CCCeE
Q 008621 310 DGVLTCDPNIHPHAKPVPYLTFDEAAELAYFG--AQVLHP--QSMRPAREGDIP-VRVKNSYNPN----------APGTL 374 (559)
Q Consensus 310 ~GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~G--a~vlhp--~a~~~a~~~~Ip-v~I~n~~~p~----------~~GT~ 374 (559)
||||++||+ ++++|++|+++|+.+++..| +++|+| +++..+.++|+| ++|.|+..|+ ..||+
T Consensus 231 dGVy~~dp~---~a~~i~~is~~e~~~l~~~g~~~gGM~~Kl~Aa~~a~~~gv~~v~I~~g~~~~~ll~~l~~~~~~GT~ 307 (321)
T 2v5h_A 231 RGILEDPKR---PESLIPRLNIPQSRELIAQGIVGGGMIPKVDCCIRSLAQGVRAAHIIDGRIPHALLLEIFTDAGIGTM 307 (321)
T ss_dssp SSCBSSTTC---TTCBCCEEEHHHHHHHHHTTSSCTTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHCCCCSEEE
T ss_pred CceEcCCCC---CCeeeeEEcHHHHHHHHhCCCCcCcHHHHHHHHHHHHHcCCCEEEEEeCCCCchHHHHHhcCCCCceE
Confidence 999999998 69999999999999998864 678998 488999999999 9999987664 57999
Q ss_pred EecC
Q 008621 375 IRRS 378 (559)
Q Consensus 375 I~~~ 378 (559)
|.+.
T Consensus 308 I~~~ 311 (321)
T 2v5h_A 308 IVGS 311 (321)
T ss_dssp EECC
T ss_pred EECC
Confidence 9865
No 27
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}
Probab=99.93 E-value=4.2e-26 Score=212.62 Aligned_cols=148 Identities=32% Similarity=0.488 Sum_probs=129.6
Q ss_pred CccceeeEEeeecCeEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEecCceeEEEeCCCchhhHHHHHHHHHHHHH
Q 008621 381 MSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQASELDHV 460 (559)
Q Consensus 381 ~~~~~It~Is~~~~ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstSe~sIs~~v~~~~~~~~~~~~~~~~l~~~ 460 (559)
+++..|++|+.++|+++|++.+.+|.+.+|+++++|+.|+++||+|+||++++.+++|++++++ .+.++
T Consensus 4 ~~~~~v~gIa~~~~va~Iti~~~~m~~~~g~~~~if~~La~~~I~vd~I~~s~~~Isf~v~~~~-----------~~~~i 72 (157)
T 3mah_A 4 TEKDCIKAVAAKDGITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVDMVATSEVGVSLTIDNDK-----------NLPDI 72 (157)
T ss_dssp ---CCCCEEEEEEEEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCCSCEECCSSEEEEEESCCT-----------THHHH
T ss_pred CCCCceEEEEecCCEEEEEEEeCCCCCchhHHHHHHHHHHHcCCCEEEEEecCCEEEEEECChH-----------HHHHH
Confidence 4456799999999999999999999999999999999999999999999999999999999764 13345
Q ss_pred HHHHhhhceeecccceeEEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhc
Q 008621 461 VEELEKIAIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFF 539 (559)
Q Consensus 461 ~~~L~~~~~v~~~~~~aiISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~~f~ 539 (559)
+++++....+++.+++++|++||. |...||+++|+|++|+ +|||.||+||+|+.+|+|+|+++|.++|+++||++|+
T Consensus 73 l~~l~~~~~v~~~~~~a~vsvvG~gm~~~~gv~a~~f~aL~--~Ini~~isqg~Se~~is~vv~~~d~~~a~~~Lh~~f~ 150 (157)
T 3mah_A 73 VRALSDIGDVTVDKDMVIICIVGDMEWDNVGFEARIINALK--GVPVRMISYGGSNYNVSVLVKAEDKKKALIALSNKLF 150 (157)
T ss_dssp HHHHTTTEEEEEEEEEEEEEEEC------CCHHHHHHHTTT--TSCCSEEEECSSSSCEEEEEEGGGHHHHHHHHHHHHH
T ss_pred HHHHhccCeEEEeCCeEEEEEECCCcccCccHHHHHHHHhC--CCCeEEEeeCCCCCEEEEEEcHHHHHHHHHHHHHHHh
Confidence 567776678888999999999997 8889999999999999 9999999999999999999999999999999999999
Q ss_pred cC
Q 008621 540 ES 541 (559)
Q Consensus 540 ~~ 541 (559)
..
T Consensus 151 ~~ 152 (157)
T 3mah_A 151 NS 152 (157)
T ss_dssp C-
T ss_pred cc
Confidence 76
No 28
>2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii}
Probab=99.93 E-value=2.5e-25 Score=225.15 Aligned_cols=216 Identities=17% Similarity=0.240 Sum_probs=153.2
Q ss_pred eEEEEeCccccCC--HHHHHHHHHHHHcCCCCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHHHH
Q 008621 82 TCVMKFGGSSLAS--AERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (559)
Q Consensus 82 ~~V~KFGGsSl~~--~~~~~~va~iI~~~~~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (559)
++|.||||+++.+ .+.++++++.|....+...+|+|++.|...+.+.+++
T Consensus 38 ~iVIKlGGs~l~~~~~~~~~~la~~I~~l~~~~~vVlVhGGg~~~~~~~~~~---------------------------- 89 (270)
T 2ogx_B 38 ATVIKIGGQSVIDRGRAAVYPLVDEIVAARKNHKLLIGTGAGTRARHLYSIA---------------------------- 89 (270)
T ss_dssp EEEEEECTTTTGGGCHHHHHHHHHHHHHHTTTCEEEEEECCCHHHHHHHHHH----------------------------
T ss_pred eEEEEechHHhCCCCHHHHHHHHHHHHHHhcCCcEEEEECChHHHHHHHHHH----------------------------
Confidence 8999999999997 5899999999987543244444454454443332211
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEecCCCCc
Q 008621 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNA 239 (559)
Q Consensus 160 ~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a 239 (559)
.+++.+.. ........+.| ++..++...|+++|++. +|..++
T Consensus 90 ~~~g~~~~-----------------------~~~~~~~~a~G--~~~l~~~~~l~~~G~~~----------vt~~d~--- 131 (270)
T 2ogx_B 90 AGLGLPAG-----------------------VLAQLGSSVAD--QNAAMLGQLLAKHGIPV----------VGGAGL--- 131 (270)
T ss_dssp HHTTCCHH-----------------------HHHHHHHHHHH--HHHHHHHHHHGGGTCCB----------CCSSTT---
T ss_pred HhcCCChH-----------------------HHHHHHHHHHH--HHHHHHHHHHHhcCCce----------ecHhhH---
Confidence 11222110 11112234445 45666788888899872 222222
Q ss_pred eeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecC---CcchhHHHHHHHHcCcCcEEEeeCCcccccCC
Q 008621 240 DILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGR---GGSDLTATTIGKALGLQEIQVWKDVDGVLTCD 316 (559)
Q Consensus 240 ~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgR---gGSD~tAa~lA~~L~A~~l~i~TDV~GV~taD 316 (559)
..+. .+++.+.|||++||.|.+...+.+ +.|+ +++|++|+++|.+|+|+.+++||||||||++|
T Consensus 132 -------~~i~-----~lL~~g~ipVi~g~~g~~~~~~~~-~~g~~~~~~~D~~Aa~lA~~l~Ad~Li~lTDVdGvy~~d 198 (270)
T 2ogx_B 132 -------SAVP-----LSLAEVNAVVFSGMPPYKLWMRPA-AEGVIPPYRTDAGCFLLAEQFGCKQMIFVKDEDGLYTAN 198 (270)
T ss_dssp -------CHHH-----HHCTTCCEEEEECSCTTGGGCCCC-SSSSSCSSCHHHHHHHHHHHHTCSEEEEEESSSSEESSC
T ss_pred -------HHHH-----HHHhCCCEEEEeCCcccccccccc-ccccCCCCCcHHHHHHHHHhcCCCEEEEEeCCCcccCCC
Confidence 1122 246789999999998765212222 3443 88999999999999999999999999999999
Q ss_pred CCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHh--CCCCEEEecCCCCC---------CCCeEEec
Q 008621 317 PNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPARE--GDIPVRVKNSYNPN---------APGTLIRR 377 (559)
Q Consensus 317 P~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~--~~Ipv~I~n~~~p~---------~~GT~I~~ 377 (559)
|+.+|++++|++++|+|+.+++..| .++|+.....+.. .++|++|.|+++|+ ..||+|.+
T Consensus 199 P~~~~~a~~i~~i~~~e~~~~~~~g-~~~~ggm~~kl~aa~~~~~v~I~~g~~~~~l~~~l~g~~~GT~i~~ 269 (270)
T 2ogx_B 199 PKTSKDATFIPRISVDEMKAKGLHD-SILEFPVLDLLQSAQHVREVQVVNGLVPGNLTRALAGEHVGTIITA 269 (270)
T ss_dssp SSSCTTCCEESEEEHHHHHHTTCCC-TTSCHHHHHHHHHCSSCCEEEEEETTSTTHHHHHHTTCCCSEEEEC
T ss_pred CCCCCCCeEcceeCHHHHHHHhcCC-CcccHHHHHHHHHhhcCCcEEEEeCCCchHHHHHHcCCCCCeEecC
Confidence 9999999999999999999998755 6888877766665 57899999998885 67999975
No 29
>3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid, transferase; HET: ADP; 2.15A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.93 E-value=1.9e-25 Score=225.95 Aligned_cols=159 Identities=17% Similarity=0.164 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHHcCCceEEecccceEEEEecCCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCC--Ccee
Q 008621 203 CMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRT--CAIT 280 (559)
Q Consensus 203 ~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~--G~~~ 280 (559)
.+++. +.++|+++|++++++++.+.++++. +++...+...+.. +++++.|||++||++.+ .+ |+++
T Consensus 89 ~ln~~-l~~~L~~~G~~a~~l~g~~~~~~~~-----g~v~~v~~~~i~~-----lL~~g~ipVi~~~~~~~-~~~~g~~~ 156 (269)
T 3ll9_A 89 KLNSH-VCDALLAEGIPAVSMQPSAFIRAHA-----GRISHADISLIRS-----YLEEGMVPVVYGDVVLD-SDRRLKFS 156 (269)
T ss_dssp HHHHH-HHHHHHHTTCCEEECCGGGTEEEET-----TEEEEECCHHHHH-----HHHTTCEEEEECEEEEB-SCTTTSEE
T ss_pred HHHHH-HHHHHHHCCCcEEEEcchHcCeEec-----CeeeeecHHHHHH-----HHHCCCEEEECCCEEec-ccccCcce
Confidence 67775 6788999999999999999876652 4555555544433 35789999999999988 47 8888
Q ss_pred eecCCcchhHHHHHHHHcCcCcEEEeeCCcccccCCCCCCCCCccccccCHHHHHHHHH-----cCCCcchHh--HHHHH
Q 008621 281 TLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAY-----FGAQVLHPQ--SMRPA 353 (559)
Q Consensus 281 tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~a~~i~~ls~~Ea~eLa~-----~Ga~vlhp~--a~~~a 353 (559)
+++ +|++|+++|.+|+|+++++||||||||++||+++|++++|++++++|+.++.. ++...|.|| ++..+
T Consensus 157 ~~~---~D~~Aa~lA~~l~Ad~li~ltdv~Gv~~~dp~~~~~a~~i~~i~~~e~~~~l~~~~~~~~tgGM~~Kl~aa~~a 233 (269)
T 3ll9_A 157 VIS---GDQLINHFSLRLMPERVILGTDVDGVYTRNPKKHPDARLLDVIGSLDDLESLDGTLNTDVTGGMVGKIRELLLL 233 (269)
T ss_dssp EEC---HHHHHHHHHHHHCCSEEEEEESSSSCBSSCTTTCTTCCBCSBCCC-------------------SHHHHHHHHH
T ss_pred ecc---hHHHHHHHHHHcCCCeEEEecCCCEEEcCCCCcCCcceEccccCHHHHHHHhcccCCCcCcCCcHHHHHHHHHH
Confidence 887 99999999999999999999999999999999999999999999999987753 345678886 66677
Q ss_pred HhCCCCEEEecCCCCC---------CC-CeEEe
Q 008621 354 REGDIPVRVKNSYNPN---------AP-GTLIR 376 (559)
Q Consensus 354 ~~~~Ipv~I~n~~~p~---------~~-GT~I~ 376 (559)
.+.|+|++|.|...|+ .. ||+|.
T Consensus 234 ~~~Gv~v~I~~g~~~~~l~~~~~g~~~~GT~i~ 266 (269)
T 3ll9_A 234 AEKGVESEIINAAVPGNIERALLGEEVRGTRIT 266 (269)
T ss_dssp HHTTCCEEEEESSSTTHHHHHHHTCCCSSEEC-
T ss_pred HhCCCeEEEEeCCCchHHHHHHCCCCCCcEEEE
Confidence 7899999999987774 45 88886
No 30
>3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase, phosphoryl transfer, transferase; 1.53A {Streptomyces wedmorensis} PDB: 3d41_A* 3qun_A* 3quo_A* 3qur_A* 3qvf_A* 3qvh_A*
Probab=99.93 E-value=2.3e-26 Score=234.62 Aligned_cols=222 Identities=13% Similarity=0.087 Sum_probs=156.9
Q ss_pred cceEEEEeCccccCCHH--------HHHHHHHHHHcCC--CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHH
Q 008621 80 QLTCVMKFGGSSLASAE--------RMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELS 149 (559)
Q Consensus 80 ~~~~V~KFGGsSl~~~~--------~~~~va~iI~~~~--~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~ 149 (559)
++++|+||||+++.+++ .++++++.|.... +.+++||||++|...+.+++...
T Consensus 23 ~~~iVIKlGGs~l~~~~~~~~~~~~~l~~la~~Ia~l~~~G~~~vViVhGgG~~~~~~l~~~~----------------- 85 (286)
T 3d40_A 23 PDFLAIKVGGSLFSRKDEPGSLDDDAVTRFARNFARLAETYRGRMVLISGGGAFGHGAIRDHD----------------- 85 (286)
T ss_dssp CSEEEEEECGGGTBCTTSTTCBCHHHHHHHHHHHHHHHHHTTTSEEEEECCCCC--------------------------
T ss_pred CCEEEEEeCchHhCCCcccccchHHHHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHcC-----------------
Confidence 34799999999999864 8999998888753 22257777999988887754211
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceE
Q 008621 150 FVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIG 229 (559)
Q Consensus 150 ~i~~~~~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~ 229 (559)
.+ .+.. +..++.|+......+..+|+++|+++..+.+.+..
T Consensus 86 --------------~~---------------------~~~~----~~~~~vt~g~l~~~l~~~l~~~G~~a~~l~~~~~~ 126 (286)
T 3d40_A 86 --------------ST---------------------HAFS----LAGLTEATFEVKKRWAEKLRGIGVDAFPLQLAAMC 126 (286)
T ss_dssp --------------------------------------CCT----THHHHHHHHHHHHHHHHHHHHTTCCEEECCGGGTE
T ss_pred --------------CC---------------------cccc----hhcchhhHHHHHHHHHHHHHHcCCcEEEEEeecCC
Confidence 00 0111 12344454455667889999999999999988875
Q ss_pred EEEecCCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHH-cCcCcEEEeeC
Q 008621 230 FITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKA-LGLQEIQVWKD 308 (559)
Q Consensus 230 iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~-L~A~~l~i~TD 308 (559)
+ |.+ + +.......+.. +++.|.|||++||++.+ .+|+. .++++|++|+++|.+ |+|++|+||||
T Consensus 127 ~-t~d--g---~~~~~~~~i~~-----lL~~g~IpVi~gd~~~~-~~g~~---~~~~~D~~Aa~lA~~~l~Ad~LiilTD 191 (286)
T 3d40_A 127 T-LRN--G---IPQLRSEVLRD-----VLDHGALPVLAGDALFD-EHGKL---WAFSSDRVPEVLLPMVEGRLRVVTLTD 191 (286)
T ss_dssp E-EET--T---EEEECCSHHHH-----HHHTTCEEEEECEEEEB-TTSCE---EEECGGGHHHHTTTTCCSCEEEEEEES
T ss_pred c-ccC--C---eEEehHHHHHH-----HHHCcCEEEEcCCeEEc-CCCCE---EeeCHHHHHHHHHHhhCCCCEEEEecC
Confidence 4 443 1 32333332332 35789999999988887 46775 455699999999999 99999999999
Q ss_pred CcccccCCCCCCCCCccccccCHHHHHHHHH--------cCCCcchH--hHHHHHHhCCCCEEEecCCCCCCCCeEE
Q 008621 309 VDGVLTCDPNIHPHAKPVPYLTFDEAAELAY--------FGAQVLHP--QSMRPAREGDIPVRVKNSYNPNAPGTLI 375 (559)
Q Consensus 309 V~GV~taDP~~v~~a~~i~~ls~~Ea~eLa~--------~Ga~vlhp--~a~~~a~~~~Ipv~I~n~~~p~~~GT~I 375 (559)
|||||++||+ ++++|++|++.|+.+|.. ++..+|+| +++..+.+.|+|++|.|+++|+....++
T Consensus 192 VdGVy~~dP~---~a~~i~~is~~e~~~l~~~~~~~~~~~~tggM~~Kl~Aa~~a~~~gv~v~I~~g~~p~~l~~l~ 265 (286)
T 3d40_A 192 VDGIVTDGAG---GDTILPEVDARSPEQAYAALWGSSEWDATGAMHTKLDALVTCARRGAECFIMRGDPGSDLEFLT 265 (286)
T ss_dssp SSSCEECC------CEECCEEETTSCHHHHHHHHHSCC----CHHHHHHHHHHHHHHTTCEEEEEECCTTCCCGGGG
T ss_pred CCeeEcCCCC---CCcCCcccCHHHHHHHHHhhccccCCcccCcHHHHHHHHHHHHHCCCcEEEEeCCCCCcHHHHh
Confidence 9999999999 899999999998777632 46689999 5899999999999999998876443333
No 31
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=99.93 E-value=1.3e-25 Score=216.67 Aligned_cols=166 Identities=25% Similarity=0.379 Sum_probs=129.9
Q ss_pred CCCeEEecCCCCccceeeEEeeecCeEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEecC-------ceeEEEeCC
Q 008621 370 APGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSE-------VSLSLTLDP 442 (559)
Q Consensus 370 ~~GT~I~~~~~~~~~~It~Is~~~~ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstSe-------~sIs~~v~~ 442 (559)
+.+++|.....|+++.||||++++|+++|+|.+ |.+.||+++++|+.|+++||+||||+|+. ..++|+++.
T Consensus 10 ~s~~iv~e~~~mE~~vVtGIa~~~~~a~Iti~g--~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~ 87 (200)
T 4go7_X 10 HSSGLVPRGNHMEDPILTGVAHDRSEAKVTIVG--LPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSR 87 (200)
T ss_dssp ----------CCCSCEEEEEEEECSEEEEEEEE--EECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEG
T ss_pred ccCceEeCCCccccCcEEEEEccCCEEEEEEec--CCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecch
Confidence 456777777778888999999999999999984 89999999999999999999999998653 357899987
Q ss_pred CchhhHHHHHHHHHHHHHHHHHhhhceeecccceeEEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEE
Q 008621 443 SKLWSRELIQQASELDHVVEELEKIAIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLI 521 (559)
Q Consensus 443 ~~~~~~~~~~~~~~l~~~~~~L~~~~~v~~~~~~aiISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~v 521 (559)
++.... .+ .++.+..++. ...+.+.+++++||+||. |...||+++|+|++|+++||||+||++ |+++||++
T Consensus 88 ~d~~~~--~~---~l~~~~~~~~-~~~v~~~~~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIst--SEi~IS~v 159 (200)
T 4go7_X 88 DVGPAA--VE---KLDSLRNEIG-FSQLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIST--SEIRISVL 159 (200)
T ss_dssp GGHHHH--HH---HHHTTHHHHC-CSEEEEECCEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEEE--CSSEEEEE
T ss_pred hhHHHH--HH---HHHHHHhhhc-eeeEEEecCeeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEEc--cCCEEEEE
Confidence 764321 11 2333333332 356888899999999998 888999999999999999999999995 99999999
Q ss_pred EecccHHHHHHHHHHHhccCcccc
Q 008621 522 VNDDEAEQCVRALHETFFESDLAN 545 (559)
Q Consensus 522 V~~~d~~kAv~~LH~~f~~~~~~~ 545 (559)
|+++|.++|+++||++|+++...+
T Consensus 160 V~~~d~~~Av~aLH~~F~L~~~~~ 183 (200)
T 4go7_X 160 CRDTELDKAVVALHEAFGLGGDEE 183 (200)
T ss_dssp EEGGGHHHHHHHHHHHHTC----C
T ss_pred EeHHHHHHHHHHHHHHhCCCCCce
Confidence 999999999999999999875433
No 32
>3l86_A Acetylglutamate kinase; ARGB, amino-acid biosynthesis, arginine biosynthesi binding, nucleotide-binding, transferase; HET: ADP NLG; 2.06A {Streptococcus mutans}
Probab=99.93 E-value=1.3e-25 Score=227.62 Aligned_cols=233 Identities=16% Similarity=0.227 Sum_probs=168.4
Q ss_pred CcCCCcceEEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHH
Q 008621 75 DESEKQLTCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVK 152 (559)
Q Consensus 75 ~~~~~~~~~V~KFGGsSl~~~~~~~~va~iI~~~~--~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~ 152 (559)
..+.+++++|.||||+++.+. ++++++.|.... +.++|+|+|++..++..|.+++
T Consensus 31 ~~~~m~k~iVIKiGGs~l~~~--~~~l~~dIa~L~~~G~~vVlVhgGg~~i~~~l~~lg--------------------- 87 (279)
T 3l86_A 31 GRGSMKDIIVIKIGGVASQQL--SGDFLSQIKNWQDAGKQLVIVHGGGFAINKLMEENQ--------------------- 87 (279)
T ss_dssp ----CCCEEEEEECTTGGGSC--CHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHTT---------------------
T ss_pred ccccCCceEEEEEChHHHHhH--HHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHHHcC---------------------
Confidence 344455689999999999873 566666666532 3466777776555665554432
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHH--hhhHHHHHHHHHHHHHHcCCceEEecccceEE
Q 008621 153 DLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLV--SFGECMSTRIFAAYLNKIGVKARQYDAFDIGF 230 (559)
Q Consensus 153 ~~~~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~il--s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~i 230 (559)
.++ ++.+|+++. +++..+.+- ..| .++ ..+.+.|++.|+++..+++.+.++
T Consensus 88 -----------~~~-----------~~~~G~Rvt---d~~~l~~v~~~l~G-~ln-~~i~~~L~~~G~~a~~l~g~dg~l 140 (279)
T 3l86_A 88 -----------VPV-----------KKINGLRVT---SKDDMVLVSHALLD-LVG-KNLQEKLRQAGVSCQQLKSDIKHV 140 (279)
T ss_dssp -----------CCC-----------CEETTEECB---CHHHHHHHHHHHHH-TTH-HHHHHHHHHTTCCEEECSGGGGGT
T ss_pred -----------CCC-----------ccCCCcccC---cHHHHHHHHHHHHH-HHH-HHHHHHHHhCCCCEEEEecCcCCE
Confidence 111 011122221 233333331 123 223 447788999999999999999989
Q ss_pred EEecCC-----CC-ceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEE
Q 008621 231 ITTDDF-----TN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQ 304 (559)
Q Consensus 231 it~~~~-----~~-a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~ 304 (559)
+|.+++ ++ +++..++...++. +++.|.|||++| ++.+ .+|+.++++ +|++|+.+|.+|+|++|+
T Consensus 141 lta~~~~~~d~g~vG~i~~v~~~~i~~-----lL~~g~IPVi~~-v~~~-~~G~~~~i~---~D~~Aa~lA~~L~Ad~Li 210 (279)
T 3l86_A 141 VAADYLDKDTYGYVGDVTHINKRVIEE-----FLENRQIPILAS-LGYS-KEGDMLNIN---ADYLATAVAVALAADKLI 210 (279)
T ss_dssp EEEEESCHHHHBSBEEEEEECHHHHHH-----HHHTTCEEEEES-EEEC-TTSCEEECC---HHHHHHHHHHHTTCSEEE
T ss_pred EEeeccCccccCcccccchhhHHHHHH-----HHhCCcEEEECC-cEEC-CCCCEeecC---HHHHHHHHHHHcCCCEEE
Confidence 998744 44 5666666554443 357899999999 8888 479999887 999999999999999999
Q ss_pred EeeCCcccccCCCCCCCCCccccccCHHHHHHHHHcC--CCcchH--hHHHHHHhCCCC-EEEecCCCCCCCCeEEec
Q 008621 305 VWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFG--AQVLHP--QSMRPAREGDIP-VRVKNSYNPNAPGTLIRR 377 (559)
Q Consensus 305 i~TDV~GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~G--a~vlhp--~a~~~a~~~~Ip-v~I~n~~~p~~~GT~I~~ 377 (559)
|||||||||+ ++++|++++++|+.+++..| ...|.| +++..|.+.|+| ++|.|+|.. ||+|..
T Consensus 211 ilTDVdGV~~-------d~~~I~~i~~~e~~~l~~~~~~tGGM~~Kl~aa~~a~~~Gv~~v~I~~~~~~---GT~i~~ 278 (279)
T 3l86_A 211 LMTNVKGVLE-------NGAVLEKITSHQVQEKIDTAVITAGMIPKIESAAKTVAAGVGQVLIGDNLLT---GTLITA 278 (279)
T ss_dssp EECSSSSCEE-------TTEECCEEEGGGSHHHHHTTSSCTTHHHHHHHHHHHHHTTCSEEEEESSSSC---SEEEEC
T ss_pred EEeCCCcccc-------CCEehhhccHHHHHHHHhCCCCcCcHHHHHHHHHHHHHcCCCEEEEeccCCC---CeEEec
Confidence 9999999994 47899999999999998754 467888 588999999999 999999985 999975
No 33
>2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine biosynthesis, FEED-BACK inhibition, hexamer, transferase; HET: NLG ADP; 2.95A {Pseudomonas aeruginosa} SCOP: c.73.1.2
Probab=99.93 E-value=7.4e-25 Score=224.96 Aligned_cols=235 Identities=20% Similarity=0.304 Sum_probs=172.7
Q ss_pred cceEEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHH
Q 008621 80 QLTCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157 (559)
Q Consensus 80 ~~~~V~KFGGsSl~~~~~~~~va~iI~~~~--~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 157 (559)
++++|.||||+++.+++.++.+++.|.... +.++|+|+|+ |...+.+++..
T Consensus 26 ~k~iVIKlGGs~l~~~~~~~~~~~~i~~l~~~G~~vVlVhGg-G~~i~~~~~~~-------------------------- 78 (300)
T 2buf_A 26 GKTLVIKYGGNAMESEELKAGFARDVVLMKAVGINPVVVHGG-GPQIGDLLKRL-------------------------- 78 (300)
T ss_dssp TCEEEEEECCTTTTSSHHHHHHHHHHHHHHHTTCEEEEEECC-CHHHHHHHHHT--------------------------
T ss_pred CCeEEEEECchhhCCchHHHHHHHHHHHHHHCCCeEEEEECC-cHHHHHHHHHc--------------------------
Confidence 467999999999999988999998887653 3455556555 65555554321
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHH--HhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEecC
Q 008621 158 TVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL--VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD 235 (559)
Q Consensus 158 ~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~i--ls~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~ 235 (559)
+.+. ++.+|++ ..++...|.+ ++.|+. ...+...|+++|++++.+++.+.+++++.+
T Consensus 79 -----g~~~-----------~~~~g~r---vt~~~~l~~~~~~~~G~~--~~~l~~~l~~~g~~a~~~~~~~~~~l~~~~ 137 (300)
T 2buf_A 79 -----SIES-----------HFIDGMR---VTDAATMDVVEMVLGGQV--NKDIVNLINRHGGSAIGLTGKDAELIRAKK 137 (300)
T ss_dssp -----TCCC-----------CBSSSSB---CBCHHHHHHHHHHHHHTH--HHHHHHHHHHTTCCEEEEEETGGGCEEEEE
T ss_pred -----CCCc-----------cccCCee---cCCHHHHHHHHHHHHHHH--HHHHHHHHHhCCCCEEEecCCCCCeeeeee
Confidence 1110 0111111 1234555554 335765 566888899999999999988777776542
Q ss_pred -----------------CCC-ceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHH
Q 008621 236 -----------------FTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKA 297 (559)
Q Consensus 236 -----------------~~~-a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~ 297 (559)
++. .++...+...+. .+++.|.|||+++ ++.+ ..|+.++++ +|++|+++|.+
T Consensus 138 ~~~~~~~~~~~~~~~~d~g~~g~v~~v~~~~i~-----~lL~~g~IpVi~~-v~~~-~~G~~~~i~---~D~~Aa~lA~~ 207 (300)
T 2buf_A 138 LTVTRQTPEMTKPEIIDIGHVGEVTGVNVGLLN-----MLVKGDFIPVIAP-IGVG-SNGESYNIN---ADLVAGKVAEA 207 (300)
T ss_dssp CCCCCC--------CCCCBSBEEEEEECHHHHH-----HHHHTTCEEEEEE-EEEC-TTSCEEECC---HHHHHHHHHHH
T ss_pred ccccccchhhcccccccCCcceeEEEECHHHHH-----HHHHCCCEEEEcC-ceeC-CCCCEEEEC---HHHHHHHHHHH
Confidence 322 233334443332 2457899999996 5777 478888886 99999999999
Q ss_pred cCcCcEEEeeCCcccccCCCCCCCCCccccccCHHHHHHHHHcC--CCcchH--hHHHHHHhCCCC-EEEecCCCCC---
Q 008621 298 LGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFG--AQVLHP--QSMRPAREGDIP-VRVKNSYNPN--- 369 (559)
Q Consensus 298 L~A~~l~i~TDV~GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~G--a~vlhp--~a~~~a~~~~Ip-v~I~n~~~p~--- 369 (559)
|+|+.+++||||||||++ ++++|++++++|+.+++..| .++|+| +++..+.++|+| ++|.|+..|+
T Consensus 208 l~Ad~li~lTdVdGv~~~------~a~~i~~i~~~e~~~~~~~~~~~ggM~~Kv~aa~~a~~~gv~~v~I~~g~~~~~ll 281 (300)
T 2buf_A 208 LKAEKLMLLTNIAGLMDK------QGQVLTGLSTEQVNELIADGTIYGGMLPKIRCALEAVQGGVTSAHIIDGRVPNAVL 281 (300)
T ss_dssp HTCSEEEEEESSSCCBCT------TSCBCCEECHHHHHHHHHTTCSCTTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHH
T ss_pred cCCCEEEEEeCCCCeECC------CCcChhhCCHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCEEEEeeCCCCchHH
Confidence 999999999999999997 38899999999999998875 588999 588999999999 9999977664
Q ss_pred -------CCCeEEecC
Q 008621 370 -------APGTLIRRS 378 (559)
Q Consensus 370 -------~~GT~I~~~ 378 (559)
..||+|.+.
T Consensus 282 ~~~~~~~~~GT~i~~~ 297 (300)
T 2buf_A 282 LEIFTDSGVGTLISNR 297 (300)
T ss_dssp HHHSSTTCCSEEEECC
T ss_pred HHHhcCCCCceEEEeC
Confidence 579999864
No 34
>1e19_A Carbamate kinase-like carbamoylphosphate synthetase; transferase, hyperthermophiles, ADP site, phosphoryl group transfer; HET: ADP; 1.5A {Pyrococcus furiosus} SCOP: c.73.1.1
Probab=99.92 E-value=4.4e-25 Score=227.94 Aligned_cols=239 Identities=15% Similarity=0.118 Sum_probs=163.8
Q ss_pred CcceEEEEeCccccC--CH--------HHHHHHHHHHHcCC--CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhh
Q 008621 79 KQLTCVMKFGGSSLA--SA--------ERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCID 146 (559)
Q Consensus 79 ~~~~~V~KFGGsSl~--~~--------~~~~~va~iI~~~~--~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~ 146 (559)
|++++|+||||+++. +. +.++++++.|.... +.++|+|+|++..+++.|.+.....
T Consensus 1 m~k~iViK~GGsal~~~~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgg~~i~~~l~~~~~~~------------ 68 (314)
T 1e19_A 1 MGKRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLLLHMDAGQ------------ 68 (314)
T ss_dssp -CCEEEEECCGGGTCCTTCCCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHH------------
T ss_pred CCCEEEEEEChHHhcCCCCccchhhhHHHHHHHHHHHHHHHHCCCeEEEEeCChHHHhHHHHhccCcc------------
Confidence 356899999999999 54 58888998888653 3467788887777888776643210
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHH--hhhH---HHHHHHHHHHHHHcCCce-
Q 008621 147 ELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLV--SFGE---CMSTRIFAAYLNKIGVKA- 220 (559)
Q Consensus 147 ~l~~i~~~~~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~il--s~GE---~lsa~ll~~~L~~~Gi~a- 220 (559)
++ + .+. ++..+.+. ..|+ .+ ..++...|++.|+++
T Consensus 69 -------------------------------~~-~---~~~---~~~l~~~~a~~~G~i~~~l-~~~l~~~l~~~gi~a~ 109 (314)
T 1e19_A 69 -------------------------------AT-Y---GIP---AQPMDVAGAMSQGWIGYMI-QQALKNELRKRGMEKK 109 (314)
T ss_dssp -------------------------------HH-H---CCC---CCCHHHHHHHHHHHHHHHH-HHHHHHHHHHTTCCCC
T ss_pred -------------------------------cc-C---CCC---hhHHHHHHHHHhhHHHHHH-HHHHHHHHHHcCCchh
Confidence 00 0 011 11223332 2243 55 566778899999987
Q ss_pred -------EEecccce----------EEEEecC-------C------------CCce-----eeecchHHHHHHHhhchhc
Q 008621 221 -------RQYDAFDI----------GFITTDD-------F------------TNAD-----ILEATYPAVAKRLHGDWIT 259 (559)
Q Consensus 221 -------~~l~~~~~----------~iit~~~-------~------------~~a~-----i~~~~~~~i~~~l~~~l~~ 259 (559)
+.+++.|. ++++.++ + .+.. +...+...+ ..|++
T Consensus 110 ~~~~~~qv~l~~~d~~f~~~~k~~g~~~t~~~a~~~~~~~g~~~~g~~~~~~~~~v~s~~~i~~v~~~~i-----~~lL~ 184 (314)
T 1e19_A 110 VVTIITQTIVDKNDPAFQNPTKPVGPFYDEETAKRLAREKGWIVKEDSGRGWRRVVPSPDPKGHVEAETI-----KKLVE 184 (314)
T ss_dssp EEEBCCEEEECTTCGGGTSCCEEEEEEECHHHHHHHHHHHCCEEEECTTSCEEEEECCCCEEEETTHHHH-----HHHHH
T ss_pred hhhhheeeeecccchhhccccccccceecHHHhhhhhhhcCccccccccccccccccCcccceeehHHHH-----HHHHH
Confidence 56676662 3343110 1 1110 222233322 23467
Q ss_pred CCcEEEEcCCCcccC-CCCceeeecC---CcchhHHHHHHHHcCcCcEEEeeCCcccccCCCCCCCCCccccccCHHHHH
Q 008621 260 DLAIPIVTGFLGKAW-RTCAITTLGR---GGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAA 335 (559)
Q Consensus 260 ~~~ipVv~Gfig~~~-~~G~~~tlgR---gGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~a~~i~~ls~~Ea~ 335 (559)
.|.|||++||.|... .+.+. ++|+ +++|++|+++|.+|+|++|++||||||||++|| .|++++|++++++|+.
T Consensus 185 ~g~IpV~~Gg~giPi~~~~d~-~~g~~~~~d~D~~Aa~lA~~l~Ad~li~lTdVdGvy~~~p--~~~a~~i~~i~~~e~~ 261 (314)
T 1e19_A 185 RGVIVIASGGGGVPVILEDGE-IKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGAALYYG--TEKEQWLREVKVEELR 261 (314)
T ss_dssp TTCEEECSGGGCEEEEEETTE-EEECCCCCCHHHHHHHHHHHTTCSEEEEEESSSSCEETTT--STTCEECCEEEHHHHH
T ss_pred CCCEEEEeCCCccCeEECCCC-cceeEEeccHHHHHHHHHHHcCCCEEEEeccCCEEECCCC--CCCCeECCEECHHHHH
Confidence 899999998644321 01122 5664 889999999999999999999999999999999 4899999999999999
Q ss_pred HHHHcCC---CcchHh---HHHHHHhCCCCEEEec------CCCCCCCCeEEec
Q 008621 336 ELAYFGA---QVLHPQ---SMRPAREGDIPVRVKN------SYNPNAPGTLIRR 377 (559)
Q Consensus 336 eLa~~Ga---~vlhp~---a~~~a~~~~Ipv~I~n------~~~p~~~GT~I~~ 377 (559)
+++..|. ..|+|| |++.+.+.++|++|.| .++. ..||+|.+
T Consensus 262 ~~~~~g~~~~GgM~~Kv~aa~~~~~~~~~~v~I~~~~~l~~~~~g-~~GT~i~~ 314 (314)
T 1e19_A 262 KYYEEGHFKAGSMGPKVLAAIRFIEWGGERAIIAHLEKAVEALEG-KTGTQVLP 314 (314)
T ss_dssp HHHHTTCSCTTTHHHHHHHHHHHHHHTCSEEEEEEGGGHHHHHTT-SSSEEEEC
T ss_pred HHHhCCCcCCCChHHHHHHHHHHHHhCCCeEEEecHHHHHHHHcC-CCCeEEcC
Confidence 9988654 689998 7777888999999987 3333 47999863
No 35
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=99.90 E-value=3.1e-23 Score=197.71 Aligned_cols=152 Identities=26% Similarity=0.384 Sum_probs=129.2
Q ss_pred ccceeeEEeeecCeEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEec--C-----ceeEEEeCCCchhhHHHHHHH
Q 008621 382 SKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS--E-----VSLSLTLDPSKLWSRELIQQA 454 (559)
Q Consensus 382 ~~~~It~Is~~~~ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstS--e-----~sIs~~v~~~~~~~~~~~~~~ 454 (559)
+++.|++|+.++|+++|+|.+ |.+.+|+++++|+.|+++||+|+||+++ + .+++|+++.++... +.+
T Consensus 3 e~~~V~gIa~~~~~~~Iti~~--~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~~~~--a~~-- 76 (181)
T 3s1t_A 3 EDPILTGVAHDRSEAKVTIVG--LPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVGPA--AVE-- 76 (181)
T ss_dssp -CCEEEEEEEECSEEEEEEEE--EESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTTHHH--HHH--
T ss_pred CCCcEEEEEecCCEEEEEEec--CCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhHHHH--HHH--
Confidence 346799999999999999995 8899999999999999999999999863 2 47999999887532 111
Q ss_pred HHHHHHHHHHhhhceeecccceeEEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHH
Q 008621 455 SELDHVVEELEKIAIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRA 533 (559)
Q Consensus 455 ~~l~~~~~~L~~~~~v~~~~~~aiISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~ 533 (559)
.++++..++ ....+++.+++|+|++||. |...||+++|+|++|+++||||.||++ |+.+||++|+++|.++|+++
T Consensus 77 -~L~~~~~el-~~~~v~~~~~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Ist--Sei~Is~vV~~~d~~~Av~a 152 (181)
T 3s1t_A 77 -KLDSLRNEI-GFSQLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIST--SEIRISVLCRDTELDKAVVA 152 (181)
T ss_dssp -HHHHTHHHH-CCSEEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEE--ETTEEEEEEEGGGHHHHHHH
T ss_pred -HHHHHHHhc-CcceEEEeCCEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEEc--CCCEEEEEEeHHHHHHHHHH
Confidence 233333444 2467888899999999997 888999999999999999999999995 89999999999999999999
Q ss_pred HHHHhccCcc
Q 008621 534 LHETFFESDL 543 (559)
Q Consensus 534 LH~~f~~~~~ 543 (559)
||++|+..+.
T Consensus 153 LH~~f~l~~~ 162 (181)
T 3s1t_A 153 LHEAFGLGGD 162 (181)
T ss_dssp HHHHHTCCC-
T ss_pred HHHHHcCCCC
Confidence 9999998754
No 36
>3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate pathway, isopentenyl phsophate kinase, beta-alpha sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A {Thermoplasma acidophilum} PDB: 3lkk_A*
Probab=99.90 E-value=2.6e-23 Score=207.92 Aligned_cols=224 Identities=15% Similarity=0.173 Sum_probs=150.0
Q ss_pred CcceEEEEeCccccCCH--------HHHHHHHHHHHcCCCCCcE-EEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHH
Q 008621 79 KQLTCVMKFGGSSLASA--------ERMREVAELILSFPNERPV-IVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELS 149 (559)
Q Consensus 79 ~~~~~V~KFGGsSl~~~--------~~~~~va~iI~~~~~~~~v-VVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~ 149 (559)
+|+++|.||||+++.++ +.++++++.|.. +.++| +|+++ |...+.+++.
T Consensus 2 ~~k~iViKiGG~~l~~~~~~~~l~~~~l~~l~~~i~~--G~~vv~lVhGG-G~~~~~~~~~------------------- 59 (249)
T 3ll5_A 2 PFTMMILKIGGSVITDKSAYRTARTYAIRSIVKVLSG--IEDLVCVVHGG-GSFGHIKAME------------------- 59 (249)
T ss_dssp --CCEEEEECHHHHBCTTSTTCBCHHHHHHHHHHHHT--CTTEEEEEECC-GGGTHHHHHH-------------------
T ss_pred CceEEEEEECccEEecCcccccchHHHHHHHHHHHhc--CCceEEEEECc-cHHHHHHHHH-------------------
Confidence 36789999999999886 489999999986 55666 67666 6555553321
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccceE
Q 008621 150 FVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIG 229 (559)
Q Consensus 150 ~i~~~~~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~ 229 (559)
++.++.... .+ -.+ .+..+..++ .+|+.++ .+|++.|+++.++++.+++
T Consensus 60 ------------~gi~~~~~~--~d-----~~g--------l~~t~~~~~---~ln~~~v-~~l~~~G~~a~~l~~~~~~ 108 (249)
T 3ll5_A 60 ------------FGLPGPKNP--RS-----SIG--------YSIVHRDME---NLDLMVI-DAMIEMGMRPISVPISALR 108 (249)
T ss_dssp ------------HTCSEECCH--HH-----HHH--------HHHHHHHHH---HHHHHHH-HHHHHTTCCEEECCGGGSC
T ss_pred ------------hCCCcCCCc--cc-----ccc--------HHHHHHHHH---HHHHHHH-HHHHHCCCcEEEEcHHHcc
Confidence 111110000 00 000 111222222 7788877 7899999999999998864
Q ss_pred EEEecCCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCC
Q 008621 230 FITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDV 309 (559)
Q Consensus 230 iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV 309 (559)
+ .+++ +...+. .++++|.|||++|+++.+ .+|..++++ +|++|+.+|.+|+|+.+++||||
T Consensus 109 ~-------~g~v---~~~~i~-----~ll~~g~ipVi~~~~~~~-~~~~~~~~~---~D~~Aa~lA~~l~Ad~li~ltdv 169 (249)
T 3ll5_A 109 Y-------DGRF---DYTPLI-----RYIDAGFVPVSYGDVYIK-DEHSYGIYS---GDDIMADMAELLKPDVAVFLTDV 169 (249)
T ss_dssp B-------SSSB---CCHHHH-----HHHHTTCEEEEECEEEEE-ETTEEEEEC---HHHHHHHHHHHHCCSEEEEEESS
T ss_pred c-------ccEE---cHHHHH-----HHHHCCCEEEECCCEEEc-CCCceeeec---HHHHHHHHHHhcCCCEEEEEeCC
Confidence 3 1233 222222 245789999999988766 356665555 99999999999999999999999
Q ss_pred cccccCCCCCCCCCccccccCHHHHHHHH--HcCCCcchHh--HHHHH-HhCCCCEEEecCCCCC--------CC-CeEE
Q 008621 310 DGVLTCDPNIHPHAKPVPYLTFDEAAELA--YFGAQVLHPQ--SMRPA-REGDIPVRVKNSYNPN--------AP-GTLI 375 (559)
Q Consensus 310 ~GV~taDP~~v~~a~~i~~ls~~Ea~eLa--~~Ga~vlhp~--a~~~a-~~~~Ipv~I~n~~~p~--------~~-GT~I 375 (559)
||||++||+.+|++++++++. ++...+. .++...|.|| ++..+ .+.|++++|.|..+|+ .. ||+|
T Consensus 170 dGv~~~dp~~~~~a~~i~~i~-~~~~~~~~~~~~tGgM~~Kl~aA~~a~~~~Gv~v~I~~g~~~~~l~~l~g~~~~GT~i 248 (249)
T 3ll5_A 170 DGIYSKDPKRNPDAVLLRDID-TNITFDRVQNDVTGGIGKKFESMVKMKSSVKNGVYLINGNHPERIGDIGKESFIGTVI 248 (249)
T ss_dssp SSCBSSCTTTCTTCCBCCEEC-CCC-------------HHHHHHHHHHHTTCTTCEEEEETTSGGGGGGTTSTTCCSEEE
T ss_pred CccCCCCCCCCCCcEEHHHHH-HHHhcccCCCeeECCHHHHHHHHHHHHHhcCCEEEEEeCCChhHHHHhCCCCCCCEEe
Confidence 999999999999999999995 2222222 2455678886 45555 8899999999976653 34 7776
No 37
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=99.89 E-value=1.1e-22 Score=191.43 Aligned_cols=148 Identities=24% Similarity=0.412 Sum_probs=127.1
Q ss_pred ceeeEEeeecCeEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEec-------CceeEEEeCCCchhhHHHHHHHHH
Q 008621 384 AVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS-------EVSLSLTLDPSKLWSRELIQQASE 456 (559)
Q Consensus 384 ~~It~Is~~~~ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstS-------e~sIs~~v~~~~~~~~~~~~~~~~ 456 (559)
..|++|+.++++++|++.+ +.+.+|+++++|+.|+++||+|+|++++ +.+++|+++.++.+. +.+ .
T Consensus 5 ~~v~gIa~~~~~a~Itv~g--~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d~~~--a~~---~ 77 (167)
T 2dt9_A 5 KAVTGVALDLDHAQIGLIG--IPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDFAQE--ALE---A 77 (167)
T ss_dssp CCEEEEEEECSEEEEEEEE--EECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGGHHH--HHH---H
T ss_pred CceeEEEEeCCEEEEEEec--CCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHHHHH--HHH---H
Confidence 4699999999999999996 6788999999999999999999999877 568999998876532 111 3
Q ss_pred HHHHHHHHhhhceeecccceeEEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHH
Q 008621 457 LDHVVEELEKIAIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALH 535 (559)
Q Consensus 457 l~~~~~~L~~~~~v~~~~~~aiISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH 535 (559)
++++..++. + .+.+.+++++|++||. |...||+++|+|++|+++||||+||++ |+.+||++|+++|.++|+++||
T Consensus 78 L~~~~~~~~-~-~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is~--Se~~is~vv~~~d~~~Av~~Lh 153 (167)
T 2dt9_A 78 LEPVLAEIG-G-EAILRPDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIAT--SEVRISVIIPAEYAEAALRAVH 153 (167)
T ss_dssp HHHHHHHHC-C-EEEEECSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEEE--CSSEEEEEEEGGGHHHHHHHHH
T ss_pred HHHHHHHhC-C-cEEEeCCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEEc--cCCEEEEEEeHHHHHHHHHHHH
Confidence 455555665 3 7888899999999997 888999999999999999999999985 8999999999999999999999
Q ss_pred HHhccCc
Q 008621 536 ETFFESD 542 (559)
Q Consensus 536 ~~f~~~~ 542 (559)
++|+.+.
T Consensus 154 ~~f~~~~ 160 (167)
T 2dt9_A 154 QAFELDK 160 (167)
T ss_dssp HHTC---
T ss_pred HHHcCCc
Confidence 9999764
No 38
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=99.87 E-value=1.8e-21 Score=183.15 Aligned_cols=149 Identities=21% Similarity=0.369 Sum_probs=124.6
Q ss_pred ccceeeEEeeecCeEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEec-----CceeEEEeCCCchhhHHHHHHHHH
Q 008621 382 SKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS-----EVSLSLTLDPSKLWSRELIQQASE 456 (559)
Q Consensus 382 ~~~~It~Is~~~~ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstS-----e~sIs~~v~~~~~~~~~~~~~~~~ 456 (559)
+...|+||+.++|+++|+|.+ |.+.+|+++++|+.|+++||+|++++++ +.+++|+++.++.+. +.+ .
T Consensus 12 ~~~~V~gIa~~~~~~~i~v~~--~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~~~~~~~--a~~---~ 84 (167)
T 2re1_A 12 ERAAVTGIAFDKNQARINVRG--VPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPRGDYKQ--TLE---I 84 (167)
T ss_dssp ---CCCEEEEECCCEEEEEEE--EECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEECGGGHHH--HHH---H
T ss_pred cCCCeEEEEecCCEEEEEEec--CCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEechHHHH--HHH---H
Confidence 445799999999999999997 8899999999999999999999999987 678999999876421 100 1
Q ss_pred HHHHHHHHhhhceeecccceeEEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHH
Q 008621 457 LDHVVEELEKIAIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALH 535 (559)
Q Consensus 457 l~~~~~~L~~~~~v~~~~~~aiISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH 535 (559)
++.+..++. ...+...+++++|+++|. |...||+++|+|++|+++||||.+++. |+.+++++|+++|.++|+++||
T Consensus 85 l~~~~~~l~-~~~i~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~ist--se~~is~vv~~~d~~~av~~Lh 161 (167)
T 2re1_A 85 LSERQDSIG-AASIDGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIST--SEIKVSVLIDEKYMELATRVLH 161 (167)
T ss_dssp HHHSSTTTT-CSEEEEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEEE--CSSEEEEEEEGGGHHHHHHHHH
T ss_pred HHHHHHHcC-CceEEecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEEc--ccCEEEEEEeHHHHHHHHHHHH
Confidence 222222222 345777889999999997 888999999999999999999999984 9999999999999999999999
Q ss_pred HHhcc
Q 008621 536 ETFFE 540 (559)
Q Consensus 536 ~~f~~ 540 (559)
++|+.
T Consensus 162 ~~f~l 166 (167)
T 2re1_A 162 KAFNL 166 (167)
T ss_dssp HHTTC
T ss_pred HHhcC
Confidence 99985
No 39
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=99.86 E-value=2.1e-21 Score=184.56 Aligned_cols=146 Identities=25% Similarity=0.388 Sum_probs=123.7
Q ss_pred cceeeEEeeecCeEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEec-------CceeEEEeCCCchhhHHHHHHHH
Q 008621 383 KAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS-------EVSLSLTLDPSKLWSRELIQQAS 455 (559)
Q Consensus 383 ~~~It~Is~~~~ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstS-------e~sIs~~v~~~~~~~~~~~~~~~ 455 (559)
+..|+||+.++|+++|+|.+ +.+.+|+++++|+.|+++||+|++++++ +.+|+|+++.++.+.
T Consensus 3 ~~~V~gIa~~~~~~~Itv~~--~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~d~~~-------- 72 (178)
T 2dtj_A 3 EAVLTGVATDKSEAKVTVLG--ISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRSDGRR-------- 72 (178)
T ss_dssp -CEEEEEEEECSEEEEEEEE--EECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHHHHHH--------
T ss_pred CCcEEEEEecCCEEEEEEec--CCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEccccHHH--------
Confidence 34799999999999999985 5788999999999999999999999877 677999998655321
Q ss_pred HHHHHHHHHhh---hceeecccceeEEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHH
Q 008621 456 ELDHVVEELEK---IAIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCV 531 (559)
Q Consensus 456 ~l~~~~~~L~~---~~~v~~~~~~aiISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv 531 (559)
...+++++.. ...+++.+++++|++||. |...||+++|+|++|+++||||.||+ +|+.+|+|+|+++|.++|+
T Consensus 73 -a~~~l~~~~~~~~~~~v~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~is--tSe~~Is~vV~~~d~~~Av 149 (178)
T 2dtj_A 73 -AMEILKKLQVQGNWTNVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS--TSEIRISVLIREDDLDAAA 149 (178)
T ss_dssp -HHHHHHTTTTTTTCSEEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE--EETTEEEEEEEGGGHHHHH
T ss_pred -HHHHHHHHHHhcCCCeEEEeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEE--cCCCeEEEEEeHHHHHHHH
Confidence 1222332221 345788899999999997 88899999999999999999999998 4899999999999999999
Q ss_pred HHHHHHhccC
Q 008621 532 RALHETFFES 541 (559)
Q Consensus 532 ~~LH~~f~~~ 541 (559)
++||++|+..
T Consensus 150 ~~Lh~~F~l~ 159 (178)
T 2dtj_A 150 RALHEQFQLG 159 (178)
T ss_dssp HHHHHHHTCC
T ss_pred HHHHHHHccC
Confidence 9999999975
No 40
>3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex, transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae} PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A*
Probab=99.86 E-value=2.7e-21 Score=209.26 Aligned_cols=234 Identities=18% Similarity=0.139 Sum_probs=166.5
Q ss_pred cceEEEEeCccccCCHHHHHHHHHHHHcCC-CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHHHH
Q 008621 80 QLTCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (559)
Q Consensus 80 ~~~~V~KFGGsSl~~~~~~~~va~iI~~~~-~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 158 (559)
++++|+||||+++.+++ ++++++.|.... ....+|+|+++|..++.+++..
T Consensus 43 ~~~iViK~GG~~l~~~~-~~~~~~~i~~l~~~g~~vvlVhggg~~~~~~~~~~--------------------------- 94 (456)
T 3d2m_A 43 GTTLVAGIDGRLLEGGT-LNKLAADIGLLSQLGIRLVLIHGAYHFLDRLAAAQ--------------------------- 94 (456)
T ss_dssp TCEEEEEECGGGGTSTH-HHHHHHHHHHHHHTTCEEEEEECCHHHHHTTTTTT---------------------------
T ss_pred CCEEEEEEChHHhcCch-HHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHC---------------------------
Confidence 46799999999999876 888888887642 2334555666776666654321
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHH-HhhhHHHHHHHHHHHHHHcCCce----EEecccceEEEEe
Q 008621 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKA----RQYDAFDIGFITT 233 (559)
Q Consensus 159 ~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~i-ls~GE~lsa~ll~~~L~~~Gi~a----~~l~~~~~~iit~ 233 (559)
+... ++.+|++ ..++...+.+ .+.| .++..+ .+.|+ .|+++ +.+++.+.++++.
T Consensus 95 ----~~~~-----------~~~~g~r---~t~~~~l~~~~~~~G-~~~~~l-~~~l~-~g~~~~~~~~~l~~~~~~~~~~ 153 (456)
T 3d2m_A 95 ----GRTP-----------HYCRGLR---VTDETSLGQAQQFAG-TVRSRF-EAALC-GSVSGFARAPSVPLVSGNFLTA 153 (456)
T ss_dssp ----TCCC-----------CCGGGCC---CBCHHHHHHHHHHHH-HHHHHH-HHHHH-TC--------CCCEECCSCEEE
T ss_pred ----CCCC-----------EeeCCee---cCCHHHHHHHHHHHh-HHHHHH-HHHHh-cccccCCCccceeeccCcEEEE
Confidence 1110 0112221 2245555555 3346 566655 55788 99998 8888888778876
Q ss_pred cCC--------CC-ceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEE
Q 008621 234 DDF--------TN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQ 304 (559)
Q Consensus 234 ~~~--------~~-a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~ 304 (559)
... +. +++...+...+. .+++.|.|||++|+ +.+ .+|++++++ +|++|+.+|.+|+|+.|+
T Consensus 154 ~~~~~~~~~d~g~~g~v~~v~~~~i~-----~lL~~g~ipIi~~~-~~~-~~g~~~~~~---~D~~Aa~lA~~l~Ad~li 223 (456)
T 3d2m_A 154 RPIGVIDGTDMEYAGVIRKTDTAALR-----FQLDAGNIVWMPPL-GHS-YGGKTFNLD---MVQAAASVAVSLQAEKLV 223 (456)
T ss_dssp EECCEETTEECBTBEEEEEECHHHHH-----HHHHTTCEEEECSE-EEC-TTSCEEECC---HHHHHHHHHHHHTCSEEE
T ss_pred EEcccccCcccCceeeEEEECHHHHH-----HHHHCCCeEEECCc-ccC-CCCCEEEEC---HHHHHHHHHHHcCCCEEE
Confidence 543 22 344445544333 24578999999995 666 479988887 999999999999999999
Q ss_pred EeeCCcccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchH--hHHHHHHhCCCC-EEEecCCCC----------CCC
Q 008621 305 VWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHP--QSMRPAREGDIP-VRVKNSYNP----------NAP 371 (559)
Q Consensus 305 i~TDV~GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp--~a~~~a~~~~Ip-v~I~n~~~p----------~~~ 371 (559)
|+|||||||++ ++++|++++++|+.+++..|...|.| +++..+.+.|++ ++|.|...| +..
T Consensus 224 ~lTdvdGv~~~------~~~~i~~i~~~e~~~~~~~g~ggm~~Kl~aa~~a~~~gv~~v~I~~~~~~~~ll~~l~~~~~~ 297 (456)
T 3d2m_A 224 YLTLSDGISRP------DGTLAETLSAQEAQSLAEHAASETRRLISSAVAALEGGVHRVQILNGAADGSLLQELFTRNGI 297 (456)
T ss_dssp EEESSSSCBCT------TSCBCSEEEHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHCSSCS
T ss_pred EEECCccccCC------CCCccccCCHHHHHHHHhccCCChHHHHHHHHHHHHhCCCEEEEecCcCCchHHHHHHhhcCC
Confidence 99999999986 58899999999999999888889999 588888999996 999987554 356
Q ss_pred CeEEecC
Q 008621 372 GTLIRRS 378 (559)
Q Consensus 372 GT~I~~~ 378 (559)
||+|.+.
T Consensus 298 GT~i~~~ 304 (456)
T 3d2m_A 298 GTSIAKE 304 (456)
T ss_dssp SEEEECC
T ss_pred ceeeecc
Confidence 9999864
No 41
>3zzh_A Acetylglutamate kinase; transferase, arginine biosynthesis; HET: ARG NLG; 2.10A {Saccharomyces cerevisiae} PDB: 3zzg_A 3zzf_A*
Probab=99.86 E-value=1.2e-21 Score=200.85 Aligned_cols=233 Identities=20% Similarity=0.333 Sum_probs=165.8
Q ss_pred CcceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHH
Q 008621 79 KQLTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHH 156 (559)
Q Consensus 79 ~~~~~V~KFGGsSl~~~~~~~~va~iI~~~--~~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~ 156 (559)
.++++|+||||+.+.+ .++++++.|... .+.++|||+++ |...+.+++.
T Consensus 47 ~~~~iViK~GGsv~~~--~~~~~~~dI~~l~~~G~~~VvVHGg-G~~i~~~l~~-------------------------- 97 (307)
T 3zzh_A 47 QQQFAVIKVGGAIISD--NLHELASCLAFLYHVGLYPIVLHGT-GPQVNGRLEA-------------------------- 97 (307)
T ss_dssp CSCCEEEEECHHHHHH--SHHHHHHHHHHHHHBTCCEEEEECC-HHHHHHHHHH--------------------------
T ss_pred CCCEEEEEEChHHhhc--hHHHHHHHHHHHHHCCCCEEEEECC-CHHHHHHHHH--------------------------
Confidence 5678999999986653 478888888764 24566666654 5555555432
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHH-HhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEec-
Q 008621 157 RTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD- 234 (559)
Q Consensus 157 ~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~i-ls~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~- 234 (559)
++.++ ++.+|++++ +++..|.+ ..+| .+|..| ++.|++.|++|+++++ ++++..
T Consensus 98 -----~gi~~-----------~~~~G~RvT---d~~~l~vv~m~~~-~vn~~l-v~~L~~~G~~Av~l~g---g~~~a~~ 153 (307)
T 3zzh_A 98 -----QGIEP-----------DYIDGIRIT---DEHTMAVVRKCFL-EQNLKL-VTALEQLGVRARPITS---GVFTADY 153 (307)
T ss_dssp -----TTCCC-----------CEETTEECB---CHHHHHHHHHHHH-HHHHHH-HHHHHHTTCCEEEECS---SSEEEEE
T ss_pred -----cCCCc-----------cccCCeecC---CHHHHHHHHHHHH-HHHHHH-HHHHHhCCCCeeEEcC---CcEEEEe
Confidence 22221 123444433 45666655 3467 578776 5789999999999987 345554
Q ss_pred ----CCC-CceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCC
Q 008621 235 ----DFT-NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDV 309 (559)
Q Consensus 235 ----~~~-~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV 309 (559)
+|+ .+++..++...+.. ++++|.|||++|+ |.+ .+|++++++ +|++|+.+|.+|+|++|+|+|||
T Consensus 154 ~~~~d~g~~G~i~~v~~~~i~~-----lL~~g~IpVi~~~-g~~-~~G~~~~i~---~D~~A~~lA~~L~Ad~Li~lTdV 223 (307)
T 3zzh_A 154 LDKDKYKLVGNIKSVTKEPIEA-----SIKAGALPILTSL-AET-ASGQMLNVN---ADVAAGELARVFEPLKIVYLNEK 223 (307)
T ss_dssp SCHHHHBSBEEEEEECCHHHHH-----HHHHTCEEEECCC-EEC-TTCBEEBCC---HHHHHHHHHHHHCCSEEEEECSS
T ss_pred cCccccCccccccccCHHHHHH-----HHHCCCEEEEeCC-eEC-CCCcEEecC---HHHHHHHHHHhCCCCEEEEEeCC
Confidence 344 36777777765554 3467899999996 777 479998887 99999999999999999999999
Q ss_pred cccccCCCCCCCCCccccccCHHH-HHHHHHcC--CCcchHh--HHHHHHhC---CCCEEEecCC-------CCCCCCeE
Q 008621 310 DGVLTCDPNIHPHAKPVPYLTFDE-AAELAYFG--AQVLHPQ--SMRPAREG---DIPVRVKNSY-------NPNAPGTL 374 (559)
Q Consensus 310 ~GV~taDP~~v~~a~~i~~ls~~E-a~eLa~~G--a~vlhp~--a~~~a~~~---~Ipv~I~n~~-------~p~~~GT~ 374 (559)
||||++ |++++|++++++| +.++...| ...|.|| +++.|.+. +.+++|.+.. ..+..||+
T Consensus 224 ~GV~~~-----~~~~~i~~i~~~e~~~~l~~~~~~tGGM~~Kl~aa~~a~~~v~~g~~v~I~~~~~ll~elft~~g~GT~ 298 (307)
T 3zzh_A 224 GGIING-----STGEKISMINLDEEYDDLMKQSWVKYGTKLKIREIKELLDYLPRSSSVAIINVQDLQKELFTDSGAGTM 298 (307)
T ss_dssp CSCEET-----TTTEECCEEEHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHSCTTCCEEEECGGGHHHHHHSCCCCSEE
T ss_pred cceecC-----CCCcCCcccCHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHhccCeEEEEeCccHHHHHHhcCCCCcEE
Confidence 999986 5789999999976 66777653 4578887 33444443 8899998732 23568999
Q ss_pred EecCC
Q 008621 375 IRRSR 379 (559)
Q Consensus 375 I~~~~ 379 (559)
|.+..
T Consensus 299 I~~~~ 303 (307)
T 3zzh_A 299 IRRGY 303 (307)
T ss_dssp EECCC
T ss_pred EecCC
Confidence 98753
No 42
>2we5_A Carbamate kinase 1; arginine catabolism, arginine metabolism, ATP synthesys, open alpha/beta sheet, phosphotransferase, transferase; HET: ADP; 1.39A {Enterococcus faecalis} PDB: 1b7b_A 2we4_A*
Probab=99.85 E-value=5.2e-21 Score=197.17 Aligned_cols=115 Identities=17% Similarity=0.174 Sum_probs=90.9
Q ss_pred hhcCCcEEEEcCCCcccC----CCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcccccCCCCCCCCCccccccCHH
Q 008621 257 WITDLAIPIVTGFLGKAW----RTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFD 332 (559)
Q Consensus 257 l~~~~~ipVv~Gfig~~~----~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~a~~i~~ls~~ 332 (559)
|++.|.|||+.||.|... ..|+..++ .+|++|+.+|.+|+||.|+|+|||||||+ || ..|++++|++++++
T Consensus 178 lL~~g~IpIi~Gg~Gipv~~~~~~g~~~~~---~~D~~Aa~lA~~l~Ad~LiilTdVdGVy~-dp-~~~~a~~i~~i~~~ 252 (310)
T 2we5_A 178 LIKNDIITISCGGGGIPVVGQELKGVEAVI---DKDFASEKLAELVDADALVILTGVDYVCI-NY-GKPDEKQLTNVTVA 252 (310)
T ss_dssp HHHTTCEEECCGGGCEEEETTTTEECCCCC---CHHHHHHHHHHHTTCSEEEEECSCSSCEE-ST-TSTTCEECCEEEHH
T ss_pred HHHCCCEEEEECCCCCCCcCCCCCCcEeec---CHHHHHHHHHHHcCCCEEEEEeCchHhhC-CC-CCCCCeECCEEcHH
Confidence 467899999998765331 12333334 49999999999999999999999999999 88 48899999999999
Q ss_pred HHHHHHHcC---CCcchHh--HHHHHHhCCC--CEEEec------CCCCCCCCeEEe
Q 008621 333 EAAELAYFG---AQVLHPQ--SMRPAREGDI--PVRVKN------SYNPNAPGTLIR 376 (559)
Q Consensus 333 Ea~eLa~~G---a~vlhp~--a~~~a~~~~I--pv~I~n------~~~p~~~GT~I~ 376 (559)
|+.+++..| ...|.|| ++..+.+.|+ +++|.| .+..+..||+|.
T Consensus 253 e~~~~~~~g~~~~GgM~~Kv~aa~~a~~~gv~~~v~I~~~~~l~~~l~g~~~GT~i~ 309 (310)
T 2we5_A 253 ELEEYKQAGHFAPGSMLPKIEAAIQFVESQPNKQAIITSLENLGSMSGDEIVGTVVT 309 (310)
T ss_dssp HHHHHHHTTCSCTTTTHHHHHHHHHHHHHSTTCEEEEECSGGGGGCBTTBCCSEEEE
T ss_pred HHHHHhhCCCCCCCChHHHHHHHHHHHHcCCCceEEECcHHHHHHHHcCCCCCeEEe
Confidence 999998754 3668886 6677778888 899964 233345788885
No 43
>2e9y_A Carbamate kinase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=99.84 E-value=6.9e-21 Score=196.74 Aligned_cols=235 Identities=13% Similarity=0.110 Sum_probs=156.9
Q ss_pred CcceEEEEeCccccC--CH--------HHHHHHHHHHHcCC-CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhH
Q 008621 79 KQLTCVMKFGGSSLA--SA--------ERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDE 147 (559)
Q Consensus 79 ~~~~~V~KFGGsSl~--~~--------~~~~~va~iI~~~~-~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~ 147 (559)
+++++|.||||+++. +. +.++++++.|.... ....+|+||++|...+.+++....
T Consensus 3 ~~~~iVIKlGGs~l~~~~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgg~~~~~~~~~~~~-------------- 68 (316)
T 2e9y_A 3 SGRLAVIALGGNAIAGPGMDVSVESQTAAVKRASSIIADVLADGWRSVITHGNGPQVGYLSEAFEA-------------- 68 (316)
T ss_dssp -CCEEEEECCHHHHSBTTTBCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHT--------------
T ss_pred CCCEEEEEEChHHhcCCCCCcchhhHHHHHHHHHHHHHHHHHCCCEEEEEcCCcHHHhHHHHHcCC--------------
Confidence 456799999999999 64 68889998888753 234566778888877766542110
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHH--HhhhH---HHHHHHHHHHHHHcCCce--
Q 008621 148 LSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL--VSFGE---CMSTRIFAAYLNKIGVKA-- 220 (559)
Q Consensus 148 l~~i~~~~~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~i--ls~GE---~lsa~ll~~~L~~~Gi~a-- 220 (559)
.. +..++...|.+ .+.|+ .++ ..+...|.+.|+++
T Consensus 69 -----------------~~--------------------~~t~~~~l~~~~~~~~G~i~~~l~-~~l~~~l~~~g~~a~~ 110 (316)
T 2e9y_A 69 -----------------LP--------------------PERPRQPLYIATAMTQAWIGLLLK-HSLEEELRRRGLNVLV 110 (316)
T ss_dssp -----------------SC--------------------TTSCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHTTCCCCC
T ss_pred -----------------CC--------------------CCCCHHHHHHHHHHHHhHHHHHHH-HHHHHHHHhcCCCccc
Confidence 00 00011222222 22343 456 46888899999998
Q ss_pred ------EEecccce----------EEEEe---------cCC---CC------------ceeeecchHHHHHHHhhchhcC
Q 008621 221 ------RQYDAFDI----------GFITT---------DDF---TN------------ADILEATYPAVAKRLHGDWITD 260 (559)
Q Consensus 221 ------~~l~~~~~----------~iit~---------~~~---~~------------a~i~~~~~~~i~~~l~~~l~~~ 260 (559)
+.+++.|. ++++. ..| ++ ..+...+...+. .|++.
T Consensus 111 ~~v~~qv~l~~~d~~f~~~~k~~g~~~~~~~a~~~~~~~g~~~~~~~g~g~r~vv~sp~~i~~v~~~~i~-----~lL~~ 185 (316)
T 2e9y_A 111 PVVISRVLVDVSDPSFNNPSKPVGPIYGREEAEELSRRYGWVFKRDPRGGFRRVVPSPRPVSIVDRDLIA-----EASAE 185 (316)
T ss_dssp CEECCEEEECTTCGGGTSCCEEEEEEECHHHHHHHHHHHCCEEEECTTSSEEEEECCCCEEEETTHHHHH-----HHHHH
T ss_pred cceeeEEEeccccccccccccccccccchhhhhhhhhhcceeeeccccccceecccCCCcceeehHHHHH-----HHHHC
Confidence 78887773 23320 001 11 001223333232 34577
Q ss_pred CcEEEEcCCCcc----cCCCCce----eeecCCcchhHHHHHHHHcCcCcEEEeeCCcccccCCCCCCCCCccccccCHH
Q 008621 261 LAIPIVTGFLGK----AWRTCAI----TTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFD 332 (559)
Q Consensus 261 ~~ipVv~Gfig~----~~~~G~~----~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~a~~i~~ls~~ 332 (559)
|.|||++|+.|. + ++|.. .++ ++|++|+++|.+|+||.|+|+|||||||+ ||+ .|++++|++++++
T Consensus 186 g~IpI~~g~~g~pv~~~-~~g~~~g~~~~i---d~D~~Aa~lA~~l~Ad~LiilTdVdGVy~-dp~-~p~a~~i~~i~~~ 259 (316)
T 2e9y_A 186 SPAVVALGGGGVPVVER-PGGVLEPVEAVV---DKDLASSLLATQLNADLLVILTDVPGVAV-NYG-REGERWLRRAAAS 259 (316)
T ss_dssp CSEEEECGGGCEEEEEC-TTSCEEECSCCC---CHHHHHHHHHHHTTCSEEEEEESSSSCEE-TTT-STTCEECSEEEHH
T ss_pred CCEEEEECCCCCCeeEC-CCCCeecceeee---CHHHHHHHHHHHcCCCEEEEEeCchHhhC-CCC-CCCCcCCcEEcHH
Confidence 999999976443 4 35532 223 59999999999999999999999999999 885 7999999999999
Q ss_pred HHHHHHHc---CCCcchHh--HHHHHHhCCC-CEEEecC------CCCCCCCeEEec
Q 008621 333 EAAELAYF---GAQVLHPQ--SMRPAREGDI-PVRVKNS------YNPNAPGTLIRR 377 (559)
Q Consensus 333 Ea~eLa~~---Ga~vlhp~--a~~~a~~~~I-pv~I~n~------~~p~~~GT~I~~ 377 (559)
|+.+++.. +...|.|| ++..+.++|+ +++|.|. +.. ..||+|.+
T Consensus 260 e~~~~~~~g~~~~GgM~~Kv~aa~~a~~~gv~~v~I~~~~~l~~~l~g-~~GT~i~~ 315 (316)
T 2e9y_A 260 ELKKYLREGHFPPGSMGPKVEAAISFVERTGKPAVIGSLEEARQVLSL-QAGTVVML 315 (316)
T ss_dssp HHHHHHHTTCSCTTTHHHHHHHHHHHHHHHCSCEEEEESTTHHHHHTT-SSSEEEEC
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCCeEEECcHHHHHHHHcC-CCCeEEec
Confidence 99999874 34568886 5666778899 8999752 122 57999874
No 44
>4ab7_A Protein Arg5,6, mitochondrial; transferase, arginine biosynthesis, amino acid kinase domain GCN5-related acetyltransferase, GNAT; HET: NLG; 3.25A {Saccharomyces cerevisiae} PDB: 3zzi_A*
Probab=99.83 E-value=8.8e-21 Score=203.90 Aligned_cols=232 Identities=20% Similarity=0.344 Sum_probs=165.5
Q ss_pred CcceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHHH
Q 008621 79 KQLTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHH 156 (559)
Q Consensus 79 ~~~~~V~KFGGsSl~~~~~~~~va~iI~~~--~~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~~ 156 (559)
+++++|+|+||+.+.+ .++++++.|... .+.++|||+ ++|...+.+++.
T Consensus 47 ~~~~iVIK~GGsv~~~--~l~~la~dI~~l~~~G~~~VvVH-GgG~~i~~~l~~-------------------------- 97 (464)
T 4ab7_A 47 QQQFAVIKVGGAIISD--NLHELASCLAFLYHVGLYPIVLH-GTGPQVNGRLEA-------------------------- 97 (464)
T ss_dssp --CCEEEEECHHHHHH--CHHHHHHHHHHHHHTTCCCEEEE-CCCHHHHHHHHH--------------------------
T ss_pred CCceEEEEECHHHhhc--hHHHHHHHHHHHHHCCCeEEEEE-CCcHHHHHHHHH--------------------------
Confidence 3678999999997754 478888887753 245666655 667666666542
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHH-HhhhHHHHHHHHHHHHHHcCCceEEecccceEEEEec-
Q 008621 157 RTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD- 234 (559)
Q Consensus 157 ~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~i-ls~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~- 234 (559)
++.++ ++.+|++++ ++...+.+ +.+| .++.. +++.|++.|++|+++++ ++++.+
T Consensus 98 -----~gi~~-----------~f~~G~RvT---d~~tl~vv~mv~~-~vn~~-lv~~L~~~G~~Avglsg---g~~~a~~ 153 (464)
T 4ab7_A 98 -----QGIEP-----------DYIDGIRIT---DEHTMAVVRKCFL-EQNLK-LVTALEQLGVRARPITS---GVFTADY 153 (464)
T ss_dssp -----TTCCC-----------CEETTEECB---CHHHHHHHHHHHH-HHHHH-HHHHHHHTTCCEEEECS---SSEEEEE
T ss_pred -----cCCCc-----------cccCCeecC---CHHHHHHHHHHHH-HHHHH-HHHHHHhCCCCeEEECC---CcEEEEe
Confidence 22222 133455444 34444443 2346 57866 56789999999999987 345554
Q ss_pred ----CCC-CceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCC
Q 008621 235 ----DFT-NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDV 309 (559)
Q Consensus 235 ----~~~-~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV 309 (559)
+++ .+++..++...+.. +++.|.|||++|+ |.+ .+|++++++ +|++|+.+|.+|+|++|+++|||
T Consensus 154 ~~~~d~g~vG~I~~v~~~~I~~-----lL~~G~IPVi~~~-g~~-~~G~~~ni~---~D~~Aa~lA~~L~Ad~Li~lTdV 223 (464)
T 4ab7_A 154 LDKDKYKLVGNIKSVTKEPIEA-----SIKAGALPILTSL-AET-ASGQMLNVN---ADVAAGELARVFEPLKIVYLNEK 223 (464)
T ss_dssp SCTTTTBSBEEEEEECCHHHHH-----HHHTTCEEEEESE-EEC-TTCBEEECC---HHHHHHHHHHHHCCSEEEEEESS
T ss_pred cCccccCCcCcccccCHHHHHH-----HHHCCcEEEEcCC-cCC-CCCCEEEec---HHHHHHHHHHHcCCCEEEEEecc
Confidence 344 36777777765543 3568999999996 777 479999887 99999999999999999999999
Q ss_pred cccccCCCCCCCCCccccccCHHH-HHHHHHcC--CCcchHh--HHHHHHhC---CCCEEEecC-------CCCCCCCeE
Q 008621 310 DGVLTCDPNIHPHAKPVPYLTFDE-AAELAYFG--AQVLHPQ--SMRPAREG---DIPVRVKNS-------YNPNAPGTL 374 (559)
Q Consensus 310 ~GV~taDP~~v~~a~~i~~ls~~E-a~eLa~~G--a~vlhp~--a~~~a~~~---~Ipv~I~n~-------~~p~~~GT~ 374 (559)
||||++ |++++|++|+++| +.+|...| ...|.|| +++.|.+. +.+++|.+. |..++.||+
T Consensus 224 ~GV~~~-----~~~~lI~~it~~e~~~~li~~~~~tgGM~pKl~aa~aa~~~v~~g~~v~I~~~~~ll~eLft~~g~GT~ 298 (464)
T 4ab7_A 224 GGIING-----STGEKISMINLDEEYDDLMKQSWVKYGTKLKIREIKELLDYLPRSSSVAIINVQDLQKELFTDSGAGTM 298 (464)
T ss_dssp CSEECT-----TTCCEECEEEHHHHHHHHHTCSSCCHHHHHHHHHHHHHHTTSCTTCEEEEEESTTHHHHTTSSSTTSEE
T ss_pred cccccC-----CCCcCCcccCHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcccCcEEEEecChHHHHHHhcCCCCceE
Confidence 999986 4689999999986 56676643 4578887 45556554 788999863 234568999
Q ss_pred EecC
Q 008621 375 IRRS 378 (559)
Q Consensus 375 I~~~ 378 (559)
|.+.
T Consensus 299 I~~~ 302 (464)
T 4ab7_A 299 IRRG 302 (464)
T ss_dssp EECC
T ss_pred EecC
Confidence 9876
No 45
>3s6g_A N-acetylglutamate kinase / N-acetylglutamate SYNT; synthase, transferase; HET: COA; 2.67A {Maricaulis maris} PDB: 3s7y_A 3s6h_A*
Probab=99.83 E-value=1.3e-20 Score=202.82 Aligned_cols=236 Identities=13% Similarity=0.170 Sum_probs=166.1
Q ss_pred CCcceEEEEeCccccCCHHHHHHHHHHHHcCC--CCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHH
Q 008621 78 EKQLTCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLH 155 (559)
Q Consensus 78 ~~~~~~V~KFGGsSl~~~~~~~~va~iI~~~~--~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~ 155 (559)
.+++++|+||||+.+. +.++++++.|.... +.++|||++|+..+++.|.+.+
T Consensus 56 ~~~~~iViK~GGsv~~--~~l~~~a~dI~~l~~~G~~~VvVHGgG~~i~~~l~~~g------------------------ 109 (460)
T 3s6g_A 56 DQERFAVIKVGGAVIQ--DDLPGLASALAFLQTVGLTPVVVHGGGPQLDAALEAAD------------------------ 109 (460)
T ss_dssp CGGGSEEEEECHHHHH--HCHHHHHHHHHHHHHHTCCCEEEECCHHHHHHHHHHHS------------------------
T ss_pred CCCCEEEEEEChHHhh--hHHHHHHHHHHHHHHCCCcEEEEECCChHHHHHHHHcC------------------------
Confidence 3467899999998543 34788888887642 4678888877555555443322
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhhHHHHHHHHHHHHHHcCCceEEecccce--EEEEe
Q 008621 156 HRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDI--GFITT 233 (559)
Q Consensus 156 ~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~ils~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~--~iit~ 233 (559)
.++ ++.+|++++.+.+.....+++ | .+|..|++ +|++.|++|+++.+..+ ..++.
T Consensus 110 --------i~~-----------~f~~G~RvTd~~~l~vv~~~l--g-~vn~~lv~-aL~~~G~~Av~lsg~~~~a~~~~~ 166 (460)
T 3s6g_A 110 --------IPT-----------ERVDGLRVTRDEAMPIIRDTL--T-QANLALVD-AIRDAGGRAAAVPRGVFEADIVDA 166 (460)
T ss_dssp --------CCC-----------CCCSSSCCBCTTTHHHHHHHH--H-HHHHHHHH-HHHHTTCCEEEECSSSEEEEESCT
T ss_pred --------CCc-----------cccCCccCCCHHHHHHHHHHH--H-HHHHHHHH-HHHhCCCCceEEecCeEEEEEecC
Confidence 111 133455555444444444444 6 78988776 79999999999998432 11112
Q ss_pred cCCCC-ceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCccc
Q 008621 234 DDFTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGV 312 (559)
Q Consensus 234 ~~~~~-a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV 312 (559)
.+|+. +++..++...+.. +++.|.|||++|+ |.+ .+|++++++ +|++|+.+|.+|+|++++++||||||
T Consensus 167 ~d~g~~G~I~~v~~~~i~~-----lL~~g~IpVi~p~-g~~-~~G~~~~i~---~D~~Aa~lA~~L~Ad~LiilTdv~Gv 236 (460)
T 3s6g_A 167 DKLGRVGEPRHIHLDLVGS-----AARAGQAAILACL-GET-PDGTLVNIN---ADVAVRALVHALQPYKVVFLTGTGGL 236 (460)
T ss_dssp TTTBSEEEEEEECCHHHHH-----HHHTTCEEEEECE-EEC-TTCCEEEEC---HHHHHHHHHHHHCCSEEEEECSSCSC
T ss_pred cccCccCcceEEcHHHHHH-----HHHCCcEEEEECc-eEC-CCCcEEecC---HHHHHHHHHHHcCCCEEEEEeCCccc
Confidence 24553 6777777765544 3568999999985 777 479999897 99999999999999999999999999
Q ss_pred ccCCCCCCCCCccccccCHH-HHHHHHHcC--CCcchHh--HHHHHHhCCCCEEEecCCCC----------CCCCeEEec
Q 008621 313 LTCDPNIHPHAKPVPYLTFD-EAAELAYFG--AQVLHPQ--SMRPAREGDIPVRVKNSYNP----------NAPGTLIRR 377 (559)
Q Consensus 313 ~taDP~~v~~a~~i~~ls~~-Ea~eLa~~G--a~vlhp~--a~~~a~~~~Ipv~I~n~~~p----------~~~GT~I~~ 377 (559)
|+. ++++|++++.. |+.+|...| ...|.|| ++..+.+...++++.+...| ++.||+|.+
T Consensus 237 ~~~------~~~lI~~i~~~~e~~~l~~~~~~tGGM~~Kl~aa~~a~~gv~~v~iv~g~~~~~Ll~eLft~~g~GT~i~~ 310 (460)
T 3s6g_A 237 LDE------DGDILSSINLATDFGDLMQADWVNGGMRLKLEEIKRLLDDLPLSSSVSITRPSELARELFTHAGSGTLIRR 310 (460)
T ss_dssp BCT------TSSBCCEEEHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHTSCTTCEEEEECGGGHHHHHHSSCCSSEEEEC
T ss_pred cCC------CCeecceeCcHHHHHHHHhcCCCCCcHHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHhcCCCCceEEEc
Confidence 984 47899999996 888887753 4577886 55566664334666655444 467999987
Q ss_pred C
Q 008621 378 S 378 (559)
Q Consensus 378 ~ 378 (559)
.
T Consensus 311 ~ 311 (460)
T 3s6g_A 311 G 311 (460)
T ss_dssp C
T ss_pred C
Confidence 5
No 46
>3k4o_A Isopentenyl phosphate kinase; small molecule kinase, ATP-binding, transferase, methanocald jannaschii, isopentenyl monophosphate; 2.05A {Methanocaldococcus jannaschii} PDB: 3k4y_A* 3k52_A* 3k56_A*
Probab=99.83 E-value=2.8e-20 Score=187.62 Aligned_cols=151 Identities=15% Similarity=0.077 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHcCCceEEecccceEEEEecCCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeee
Q 008621 203 CMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTL 282 (559)
Q Consensus 203 ~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tl 282 (559)
.+++. +.++|+++|+++.++++.++++.+.+ ...+...+. .+++++.|||++||++.+. .|++.++
T Consensus 98 ~ln~~-l~~~l~~~G~~a~~l~~~d~~~~~~g-------~~v~~~~i~-----~lL~~g~ipVi~~~~~~~~-~g~~~~~ 163 (266)
T 3k4o_A 98 RFNNI-IIDTLQSYDIPAVSIQPSSFVVFGDK-------LIFDTSAIK-----EMLKRNLVPVIHGDIVIDD-KNGYRII 163 (266)
T ss_dssp HHHHH-HHHHHHTTTCCEEEECGGGTCEESSS-------CBCCCHHHH-----HHHHTTCEEEEECEEEEES-SSCEEEE
T ss_pred HHHHH-HHHHHHHCCCcEEEeeHHHcCcccCc-------eEecHHHHH-----HHHHCCCEEEEeCCEEEcC-CCCeeee
Confidence 47777 67889999999999999998666532 112333232 2357899999999988873 6666544
Q ss_pred cCCcchhHHHHHHHHcCcCcEEEeeCCcccccCCCCCCCCCccccccCHHHHHHHHH--------cCCCcchHhHHHHHH
Q 008621 283 GRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAY--------FGAQVLHPQSMRPAR 354 (559)
Q Consensus 283 gRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~a~~i~~ls~~Ea~eLa~--------~Ga~vlhp~a~~~a~ 354 (559)
+ +|++|+++|.+|+|+++++|||||||| +||++ +++++.+|+.++.. ++...|.||-.....
T Consensus 164 ~---~D~~Aa~lA~~l~Ad~li~ltdvdGv~-~d~~~------i~~~~~~e~~~l~~~~~~~~~~~~tGGM~~Kv~aa~~ 233 (266)
T 3k4o_A 164 S---GDDIVPYLANELKADLILYATDVDGVL-IDNKP------IKRIDKNNIYKILNYLSGSNSIDVTGGMKYKIEMIRK 233 (266)
T ss_dssp C---HHHHHHHHHHHHTCSEEEEEESSSSSB-SSSSB------CSEECTTTHHHHHHHHHSTTCSCCSSHHHHHHHHHHH
T ss_pred C---HHHHHHHHHHHcCCCEEEEEecCCeEE-eCCee------cCcCCHHHHHHHHHHhccccCCcccCCHHHHHHHHHH
Confidence 4 999999999999999999999999999 88865 45555444444432 344568887332222
Q ss_pred hCCCCEEEecCCCCC---------CCCeEEecC
Q 008621 355 EGDIPVRVKNSYNPN---------APGTLIRRS 378 (559)
Q Consensus 355 ~~~Ipv~I~n~~~p~---------~~GT~I~~~ 378 (559)
-.. +++|.|...|+ ..||+|.+.
T Consensus 234 a~~-~v~I~~g~~~~~l~~~l~g~~~GT~i~~~ 265 (266)
T 3k4o_A 234 NKC-RGFVFNGNKANNIYKALLGEVEGTEIDFS 265 (266)
T ss_dssp TTC-EEEEEETTSTTHHHHHHTTCCCSEEEECC
T ss_pred Hhc-CEEEEeCCCccHHHHHhCCCCCceEEEeC
Confidence 223 99999987763 579999863
No 47
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}
Probab=99.82 E-value=1.5e-19 Score=201.51 Aligned_cols=148 Identities=19% Similarity=0.341 Sum_probs=127.1
Q ss_pred ccceeeEEeeecCeEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEecC----------ceeEEEeCCCchhhHHHH
Q 008621 382 SKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSE----------VSLSLTLDPSKLWSRELI 451 (559)
Q Consensus 382 ~~~~It~Is~~~~ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstSe----------~sIs~~v~~~~~~~~~~~ 451 (559)
....|+||++++|++.|++.+ +.+.+|+.+++|+.|+++||+||||.++. .+++|+++++++..
T Consensus 431 ~~~~v~Gia~~~~~a~i~i~~--~~~~~g~~~~if~~La~~~I~vDmI~q~~~~~~~~g~~~~~isftv~~~d~~~---- 504 (600)
T 3l76_A 431 HLPAVRGVALDQDQAQIAIRH--VPDRPGMAAQLFTALAEANISVDMIIQSQRCRINQGTPCRDIAFMVAEGDSSQ---- 504 (600)
T ss_dssp -CCSCCEEEEECSEEEEEEEE--EESSTTHHHHHHHHHHHTTCCCCEEEEEEECCCSSSSCEEEEEEEEEHHHHHH----
T ss_pred ccCceEEEEeeCCEEEEEEec--CCCCccHHHHHHHHHHHcCCcEEEEEecccccccCCCccceEEEEEeHHHHHH----
Confidence 445799999999999999984 88999999999999999999999997651 37999998776431
Q ss_pred HHHHHHHHHHHHHhh---hceeecccceeEEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccH
Q 008621 452 QQASELDHVVEELEK---IAIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEA 527 (559)
Q Consensus 452 ~~~~~l~~~~~~L~~---~~~v~~~~~~aiISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~ 527 (559)
...+++++.. ...+.+.+++|+||+||. |...||+++|+|++|+++||||.||++ ||++||++|+++|.
T Consensus 505 -----a~~~l~~~~~~~~~~~v~~~~~~akVSiVG~GM~~~~Gvaa~~f~aL~~~~Ini~mist--SEi~Is~vV~~~~~ 577 (600)
T 3l76_A 505 -----AEAILQPLIKDWLDAAIVVNKAIAKVSIVGSGMIGHPGVAAHFFAALAQENINIEMIAT--SEIKISCVVPQDRG 577 (600)
T ss_dssp -----HHHHHHHHTTTSTTCEEEEECCEEEEEEECGGGTTCTTHHHHHHHHHHTTTCCCCEEEE--CSSEEEEEEEGGGH
T ss_pred -----HHHHHHHHHHhcCCceEEEeCCeEEEEEECcccccCccHHHHHHHHHHHCCCceEEEEc--CCceEEEEEeHHHH
Confidence 2223333332 246888899999999997 889999999999999999999999996 99999999999999
Q ss_pred HHHHHHHHHHhccCc
Q 008621 528 EQCVRALHETFFESD 542 (559)
Q Consensus 528 ~kAv~~LH~~f~~~~ 542 (559)
++|+++||++|+.++
T Consensus 578 ~~Av~alh~~F~l~~ 592 (600)
T 3l76_A 578 VDALKAAHSAFNLAG 592 (600)
T ss_dssp HHHHHHHHHHTTTTS
T ss_pred HHHHHHHHHHhCCCC
Confidence 999999999999764
No 48
>3s6k_A Acetylglutamate kinase; synthase, transferase; 2.80A {Xanthomonas campestris PV}
Probab=99.76 E-value=5.7e-20 Score=198.09 Aligned_cols=235 Identities=17% Similarity=0.284 Sum_probs=162.0
Q ss_pred CCcceEEEEeCccccCCHHHHHHHHHHHHcC--CCCCcEEEEcCCCcccHHHHHhhHhhhhcCcCcchhhhHHHHHHHHH
Q 008621 78 EKQLTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLH 155 (559)
Q Consensus 78 ~~~~~~V~KFGGsSl~~~~~~~~va~iI~~~--~~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~l~~i~~~~ 155 (559)
++++++|+||||+.+.+ .++.+++.|... .+.++|||++|+..+++.|.+.
T Consensus 59 ~~~~~iViK~GG~v~~~--~l~~va~dI~~l~~~G~~~VvVHGgg~~i~~~l~~~------------------------- 111 (467)
T 3s6k_A 59 DAKRFAVVKVGGAVLRD--DLEALTSSLSFLQEVGLTPIVLHGAGPQLDAELSAA------------------------- 111 (467)
T ss_dssp CSTTSCCCCCCHHHHTT--CCHHHHHHHHHHHTTSCCCCCCCCCCHHHHHHHHTT-------------------------
T ss_pred CCCcEEEEEEChHHhhh--HHHHHHHHHHHHHHCCCcEEEEECCChHHHHHHHHc-------------------------
Confidence 45678999999996554 368888887764 2457787777655444433222
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHH-hhhHHHHHHHHHHHHHHcCCceEEecccce--EEEE
Q 008621 156 HRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLV-SFGECMSTRIFAAYLNKIGVKARQYDAFDI--GFIT 232 (559)
Q Consensus 156 ~~~~~~L~~~~~~i~~~~~~l~~~l~~i~~~~~~~~~~~d~il-s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~--~iit 232 (559)
+.++ ++.+|+++ .+++..+.+. .+| .++..|++ +|++.|++|+++.+..+ ..++
T Consensus 112 -------gi~~-----------~f~~G~Rv---Td~~~l~vv~~~~g-~vn~~Lv~-aL~~~G~~Av~lsg~~~~a~~~~ 168 (467)
T 3s6k_A 112 -------GIEK-----------QTVNGLRV---TSPHALAIVRKVFQ-ASNLKLVE-ALQQNGARATSITGGVFEAEYLN 168 (467)
T ss_dssp -------SCCC-----------CCCSSSCC---BCHHHHHHHHHHHH-HHHHHHHH-HHHHHTCCBCCCCSSSBCCCBSC
T ss_pred -------CCCc-----------cccCCccC---CCHHHHHHHHHHHH-HHHHHHHH-HHHhCCCCceEEcCccEEEEecc
Confidence 1111 12233332 2455666553 457 88988776 79999999999998442 2222
Q ss_pred ecCCC-CceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcc
Q 008621 233 TDDFT-NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG 311 (559)
Q Consensus 233 ~~~~~-~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~G 311 (559)
..+|+ .++|..++...+.. +++.|.|||+++ +|.+ .+|++++++ +|++|+.+|.+|+|++|+|+|||||
T Consensus 169 ~~d~g~~G~I~~v~~~~i~~-----lL~~g~IpVi~p-vg~~-~~G~~~~i~---~D~~Aa~lA~~L~Ad~LiilTdv~G 238 (467)
T 3s6k_A 169 RDTYGLVGEVKAVNLAPIEA-----SLQAGSIPVITS-LGET-PSGQILNVN---ADFAANELVQELQPYKIIFLTGTGG 238 (467)
T ss_dssp SSSSBSBBCCCCBCCHHHHT-----HHHHTCBCCCCS-CCCC-SSSCCCBCC---HHHHHHHHHHHHCCSSCCCCCSSCS
T ss_pred CcccCccceEEEEcHHHHHH-----HHHCCCEEEEEC-ceEC-CCCcEEecC---HHHHHHHHHHhcCCCEEEEEecccc
Confidence 33555 36776666654443 456789999995 3555 368888887 9999999999999999999999999
Q ss_pred cccCCCCCCCCCccccccCHH-HHHHHHHc--CCCcchHh--HHHHHHhCCCCEEEecCCCCC----------CCCeEEe
Q 008621 312 VLTCDPNIHPHAKPVPYLTFD-EAAELAYF--GAQVLHPQ--SMRPAREGDIPVRVKNSYNPN----------APGTLIR 376 (559)
Q Consensus 312 V~taDP~~v~~a~~i~~ls~~-Ea~eLa~~--Ga~vlhp~--a~~~a~~~~Ipv~I~n~~~p~----------~~GT~I~ 376 (559)
||+.| +++|++++.. |+.++... +...|.|| ++..+.+...++++.+...|+ +.||+|.
T Consensus 239 v~~~~------~~lI~~i~~~~e~~~l~~~~~~tGGM~~Kl~aa~~a~~gv~~~~iv~g~~~~~Ll~eLft~~g~GT~i~ 312 (467)
T 3s6k_A 239 LLDAE------GKLIDSINLSTEYDHLMQQPWINGGMRVKIEQIKDLLDRLPLESSVSITRPADLAKELFTHKGSGTLVR 312 (467)
T ss_dssp CCCSS------CCCCCCCCTTTTTHHHHTSSSCCSHHHHHHHHHHHHHTTSCSSCCBCCCCTTTHHHHHHSSCTTSCCBC
T ss_pred eeCCC------CCCccccChHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCchHHHHHHhcCCCcceEEe
Confidence 99854 6789999985 77777764 34678886 666666643357777766553 4689987
Q ss_pred cC
Q 008621 377 RS 378 (559)
Q Consensus 377 ~~ 378 (559)
+.
T Consensus 313 ~~ 314 (467)
T 3s6k_A 313 RG 314 (467)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 49
>4axs_A Carbamate kinase; oxidoreductase; 2.50A {Mycoplasma penetrans}
Probab=99.65 E-value=1.7e-15 Score=156.63 Aligned_cols=117 Identities=15% Similarity=0.080 Sum_probs=83.8
Q ss_pred hchhcCCcEEEEcCC--CcccC----CCCceeeecCCcchhHHHHHHHHcCcCcEEEeeCCcccccCCCCCCCCCccccc
Q 008621 255 GDWITDLAIPIVTGF--LGKAW----RTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPY 328 (559)
Q Consensus 255 ~~l~~~~~ipVv~Gf--ig~~~----~~G~~~tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~a~~i~~ 328 (559)
+.|++.+.|||..|. ++... ..|...+ +.+|++|+++|.+|+||.++|+|||||||+.+|+ |++++|++
T Consensus 197 ~~L~~~g~Ivi~~ggggipv~~~~~~~~G~~~v---id~D~~Aa~lA~~l~Ad~LiiLTdV~gv~~~~~~--~~~~~i~~ 271 (332)
T 4axs_A 197 KQNVNNGCVCIVGGGGGIPTIIQDNQYIGVDGV---IDKDFALAKIADAVNADIFVVLTAVDYVYVDFNK--PTQKALKT 271 (332)
T ss_dssp HHHHHTTCEEECCGGGCEEEEESSSCEEECSSC---CCHHHHHHHHHHHTTCSEEEEECSCSSCEESTTS--TTCEECSS
T ss_pred HHhhcCCeEEEecccCCCCccccCCcccCceee---echHHHHHHHHHHhCCceEEEEecCCceEcCCCC--cchhhccc
Confidence 345678888777542 11110 0122333 3499999999999999999999999999998886 78999999
Q ss_pred cCHHHHHHHHHcC---CCcchHh--HHHHHHhCC--CCEEEecCCCC-----CCCCeEEe
Q 008621 329 LTFDEAAELAYFG---AQVLHPQ--SMRPAREGD--IPVRVKNSYNP-----NAPGTLIR 376 (559)
Q Consensus 329 ls~~Ea~eLa~~G---a~vlhp~--a~~~a~~~~--Ipv~I~n~~~p-----~~~GT~I~ 376 (559)
+|.+|+.++...| ...|-|| |...+.+.+ .+..|.+..+. ...||+|.
T Consensus 272 it~~e~~~~~~~g~~~~GgM~pKv~Aa~~~v~~g~g~~~iI~~~~~~~~~l~g~~GT~Iv 331 (332)
T 4axs_A 272 VDVKALNNFINQDQFAKGSMLPKIKAAMGFVNGHPNRSAIIADLSKVEDALKGLSGTKII 331 (332)
T ss_dssp CBHHHHHHHHHTTCSCTTTTHHHHHHHHHHHTTCTTCEEEEECSTTHHHHTTTSSSEEEB
T ss_pred CCHHHHHHHHHCCCcCcCCcHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHCCCCCcEEe
Confidence 9999999998754 5679997 555556654 45667543221 13699886
No 50
>3kzf_A Carbamate kinase; arginine dihydrolase pathway, giardia LAMB target, transferase; 3.00A {Giardia lamblia atcc 50803}
Probab=99.60 E-value=8.4e-15 Score=149.37 Aligned_cols=122 Identities=16% Similarity=0.148 Sum_probs=93.5
Q ss_pred hhchhcCCcEEEEcCCCcccC--CCCcee-eecCCcchhHHHHHHHHcCcCcEEEeeCCcccccCCCCCCCCCccccccC
Q 008621 254 HGDWITDLAIPIVTGFLGKAW--RTCAIT-TLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLT 330 (559)
Q Consensus 254 ~~~l~~~~~ipVv~Gfig~~~--~~G~~~-tlgRgGSD~tAa~lA~~L~A~~l~i~TDV~GV~taDP~~v~~a~~i~~ls 330 (559)
.+.|+++|.|||++||.|... .++..+ +..++++|++|+.+|.+|+||.|+|+|||||||+ ||+ .|++++|++++
T Consensus 181 I~~LL~~G~IvI~aGGgGiPv~~~~~~~~G~~~~id~D~~Aa~lA~~L~AD~LIiLTDVdGVy~-dp~-~p~a~~I~~it 258 (317)
T 3kzf_A 181 IKTLIDNNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDYLMILTDVLNACI-NYK-KPDERKLEEIK 258 (317)
T ss_dssp HHHHHHTTCEEECCGGGCEEEEECSSCEEECSCCCCHHHHHHHHHHHHTCSCEEECCSSSSCEE-SSS-CSSCEECCEEE
T ss_pred HHHHHHCCCEEEEeCCCCCCcccCCCcccceEEeccHHHHHHHHHHHhCCCEEEEecCCCeeeC-CCC-CCCCeECcCcC
Confidence 334568899999998777521 234343 3446779999999999999999999999999999 999 69999999999
Q ss_pred HHHHHHHHHcC---CCcchHh---HHHHHHhCCCCEEEecCCCC-----CCCCeEEec
Q 008621 331 FDEAAELAYFG---AQVLHPQ---SMRPAREGDIPVRVKNSYNP-----NAPGTLIRR 377 (559)
Q Consensus 331 ~~Ea~eLa~~G---a~vlhp~---a~~~a~~~~Ipv~I~n~~~p-----~~~GT~I~~ 377 (559)
++|+.++...| ...|.|| |+..+.+.+.+++|.|..+. ...||+|.+
T Consensus 259 ~~e~~~li~~g~~~~GGM~pKl~AA~~av~~gg~~v~I~s~~~l~~~l~G~~GT~I~~ 316 (317)
T 3kzf_A 259 LSEILALEKDGHFAAGSMGPKVRAAIEFTQATGKMSIITSLSTAVDALNGKCGTRIIK 316 (317)
T ss_dssp HHHHHHHHTTTSCC--CCHHHHHHHHHHHHHHCCCEEECCGGGHHHHHTTSSSEEEEC
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCCeEEEcchHHHHHHHCCCCCeEEec
Confidence 99999998643 4578886 44445567788999875322 126999875
No 51
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=99.12 E-value=1.4e-09 Score=98.94 Aligned_cols=113 Identities=16% Similarity=0.273 Sum_probs=84.8
Q ss_pred ccchhhHHHHHHHHHHhCCCcEEEEEecC---ce-eEEEeCCCchhhHHHHHHHHHHHHHHHHHhhhceeecccceeEEE
Q 008621 405 MLGQYGFLAKVFSTFEDLGISVDVVATSE---VS-LSLTLDPSKLWSRELIQQASELDHVVEELEKIAIVNLLQHRSIIS 480 (559)
Q Consensus 405 m~~~~g~larIf~~L~~~gI~Vd~IstSe---~s-Is~~v~~~~~~~~~~~~~~~~l~~~~~~L~~~~~v~~~~~~aiIS 480 (559)
+.+.||.++++|+.|+++|||+++++++. .. ++|+.++.+ ...+++++. . . .....+
T Consensus 13 v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~~~d~~-----------~a~~~L~~~---G-~----~v~~~s 73 (144)
T 2f06_A 13 LENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVSDPD-----------KAYKALKDN---H-F----AVNITD 73 (144)
T ss_dssp ECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEESCHH-----------HHHHHHHHT---T-C----CEEEEE
T ss_pred ecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEeCCHH-----------HHHHHHHHc---C-C----eEeeee
Confidence 35689999999999999999999997542 23 457653211 122222222 1 1 123457
Q ss_pred EEe-eccccchHHHHHHHHHHhCCCcE-EEEEecCCceEEEEEEecccHHHHHHHHHHH
Q 008621 481 LIG-NVQRSSLILEKAFRVLRRSGVNV-QMISQGASKVNISLIVNDDEAEQCVRALHET 537 (559)
Q Consensus 481 IVG-~~~~~~gv~~ri~~~L~~~~InI-~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~~ 537 (559)
++| .|...||++++++++|+++|||| .+++.. ++...+++++.+|.++|+++||++
T Consensus 74 vv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~-~~~~~~~~i~~~d~~~A~~~L~~~ 131 (144)
T 2f06_A 74 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFA-NNNVANVVIRPSNMDKCIEVLKEK 131 (144)
T ss_dssp EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEE-ETTEEEEEEEESCHHHHHHHHHHT
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEc-cCCcEEEEEEeCCHHHHHHHHHHc
Confidence 899 48899999999999999999999 566653 677889999999999999999997
No 52
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=98.64 E-value=2.1e-07 Score=87.80 Aligned_cols=103 Identities=17% Similarity=0.270 Sum_probs=81.1
Q ss_pred CcchHhHHHHHHhCCC--CEEEecCCCCCCCCeEEecCCC--------------CccceeeEEeeecCeEEEEEEecCcc
Q 008621 343 QVLHPQSMRPAREGDI--PVRVKNSYNPNAPGTLIRRSRD--------------MSKAVLTSIVLKRNVTMLDIVSTRML 406 (559)
Q Consensus 343 ~vlhp~a~~~a~~~~I--pv~I~n~~~p~~~GT~I~~~~~--------------~~~~~It~Is~~~~ialItV~~~~m~ 406 (559)
..+-.+-++++.++|| ++.+.|+++|+..+|.|+-.-. ......+.+...+++++|++.|.+|.
T Consensus 27 ~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~d~~~a~~~l~~~~~~~~~~~v~~~~~~a~VsvVG~gm~ 106 (178)
T 2dtj_A 27 PGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRSDGRRAMEILKKLQVQGNWTNVLYDDQVGKVSLVGAGMK 106 (178)
T ss_dssp TTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHHHHHHHHHHHHTTTTTTTCSEEEEESCEEEEEEEEECCT
T ss_pred ccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEccccHHHHHHHHHHHHHhcCCCeEEEeCCeEEEEEEcCCcc
Confidence 3344566888999995 5667788887766677652100 01112456888999999999999999
Q ss_pred chhhHHHHHHHHHHhCCCcEEEEEecCceeEEEeCCCch
Q 008621 407 GQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKL 445 (559)
Q Consensus 407 ~~~g~larIf~~L~~~gI~Vd~IstSe~sIs~~v~~~~~ 445 (559)
+.||+++++|+.|+++||||.|+++|+.+++|.|+.++.
T Consensus 107 ~~~Gv~arif~aLa~~~InI~~istSe~~Is~vV~~~d~ 145 (178)
T 2dtj_A 107 SHPGVTAEFMEALRDVNVNIELISTSEIRISVLIREDDL 145 (178)
T ss_dssp TCHHHHHHHHHHHHHTTCCCCEEEEETTEEEEEEEGGGH
T ss_pred cCccHHHHHHHHHHHCCCCEEEEEcCCCeEEEEEeHHHH
Confidence 999999999999999999999999999999999988764
No 53
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=98.34 E-value=7.7e-07 Score=96.48 Aligned_cols=112 Identities=24% Similarity=0.370 Sum_probs=88.9
Q ss_pred HHHHHHHHHHhCCCcEEEEEec--CceeEEEeCCCchhhHHHHHHHHHHHHHHHHHhhhceeecccceeEEEEEee-ccc
Q 008621 411 FLAKVFSTFEDLGISVDVVATS--EVSLSLTLDPSKLWSRELIQQASELDHVVEELEKIAIVNLLQHRSIISLIGN-VQR 487 (559)
Q Consensus 411 ~larIf~~L~~~gI~Vd~IstS--e~sIs~~v~~~~~~~~~~~~~~~~l~~~~~~L~~~~~v~~~~~~aiISIVG~-~~~ 487 (559)
+..+.+....++||++...... +..-++..+..... -..+..|...+++++|+++|. |..
T Consensus 268 m~~~a~~~a~~~gi~v~I~~~~~~~~~GT~i~~~~~~~-----------------~~~v~gIa~~~~~a~Isv~g~~m~~ 330 (473)
T 3c1m_A 268 LHPRTIEPAMEKGIPILVKNTFEPESEGTLITNDMEMS-----------------DSIVKAISTIKNVALINIFGAGMVG 330 (473)
T ss_dssp SCGGGHHHHHHHTCCEEEEETTSTTSCCEEEESCCCCC-----------------TTSCCEEEEEEEEEEEEEEECSSSC
T ss_pred hHHHHHHHHHHcCCEEEEEecCCCCCceEEEecccccc-----------------ccccchhhccCCeEEEEEecCCCCC
Confidence 3345667777889997766643 23446666532100 001356777899999999997 888
Q ss_pred cchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhc
Q 008621 488 SSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFF 539 (559)
Q Consensus 488 ~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~~f~ 539 (559)
.+|+++++|++|++++|||.||+|++|+.+|+|+|++++.+++++.||++||
T Consensus 331 ~~G~~a~if~~La~~~InV~~IsQ~tse~~Is~~V~~~d~~~a~~~L~~~l~ 382 (473)
T 3c1m_A 331 VSGTAARIFKALGEEEVNVILISQGSSETNISLVVSEEDVDKALKALKREFG 382 (473)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECCTTCCEEEEEEGGGHHHHHHHHHHHHC
T ss_pred CcCHHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEechHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999999999999993
No 54
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=98.27 E-value=2e-06 Score=82.59 Aligned_cols=60 Identities=15% Similarity=0.412 Sum_probs=56.2
Q ss_pred eeEEeeecCeEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEecCceeEEEeCCCch
Q 008621 386 LTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKL 445 (559)
Q Consensus 386 It~Is~~~~ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstSe~sIs~~v~~~~~ 445 (559)
...+...+++++|++.|.+|.+.||+.+|+|+.|++.|||+.||++||.+||+.|++++.
T Consensus 106 ~~~v~~~~~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIstSEi~IS~vV~~~d~ 165 (200)
T 4go7_X 106 FSQLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELISTSEIRISVLCRDTEL 165 (200)
T ss_dssp CSEEEEECCEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEEECSSEEEEEEEGGGH
T ss_pred eeeEEEecCeeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEEccCCEEEEEEeHHHH
Confidence 446788899999999999999999999999999999999999999999999999998764
No 55
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=98.26 E-value=1.2e-06 Score=81.56 Aligned_cols=69 Identities=30% Similarity=0.456 Sum_probs=62.9
Q ss_pred hceeecccceeEEEEEeeccccchHHHHHHHHHHhCCCcEEEEEecCC-----ceEEEEEEecccHHHHHHHHHH
Q 008621 467 IAIVNLLQHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGAS-----KVNISLIVNDDEAEQCVRALHE 536 (559)
Q Consensus 467 ~~~v~~~~~~aiISIVG~~~~~~gv~~ri~~~L~~~~InI~~IsqgaS-----e~sIs~vV~~~d~~kAv~~LH~ 536 (559)
+..|+..+++++|+++| +.+.||+++++|++|+++||||.||+|+.+ +.+++|+|++++.+++.+.|++
T Consensus 7 v~gIa~~~~~a~Itv~g-~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d~~~a~~~L~~ 80 (167)
T 2dt9_A 7 VTGVALDLDHAQIGLIG-IPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDFAQEALEALEP 80 (167)
T ss_dssp EEEEEEECSEEEEEEEE-EECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGGHHHHHHHHHH
T ss_pred eeEEEEeCCEEEEEEec-CCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHHHHHHHHHHHH
Confidence 45688889999999999 566799999999999999999999999876 7899999999999999999987
No 56
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=98.20 E-value=4.9e-06 Score=77.52 Aligned_cols=102 Identities=22% Similarity=0.276 Sum_probs=74.4
Q ss_pred CcchHhHHHHHHhCCCCEEEecCCCCCCCC----eEEecCCCC-----------ccceeeEEeeecCeEEEEEEecCccc
Q 008621 343 QVLHPQSMRPAREGDIPVRVKNSYNPNAPG----TLIRRSRDM-----------SKAVLTSIVLKRNVTMLDIVSTRMLG 407 (559)
Q Consensus 343 ~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~G----T~I~~~~~~-----------~~~~It~Is~~~~ialItV~~~~m~~ 407 (559)
..+-.+-+..+.++||++...+..... .| |.+.+..+. ..-.++.+...++++++++.|.+|.+
T Consensus 37 ~G~~~~if~~La~~~Invd~i~~s~~~-~g~~~isf~v~~~~~~~a~~~l~~~~~~l~~~~i~~~~~~a~vsvvG~~m~~ 115 (167)
T 2re1_A 37 PGVAYQILGAVADANIEVDMIIQNVGS-EGTTDFSFTVPRGDYKQTLEILSERQDSIGAASIDGDDTVCKVSAVGLGMRS 115 (167)
T ss_dssp TTHHHHHHHHHHTTTCCCCCEEEC-----CEEEEEEEECGGGHHHHHHHHHHSSTTTTCSEEEEESSEEEEEEECSSCTT
T ss_pred cCHHHHHHHHHHHcCCeEEEEEcCCCC-CCeeEEEEEEechHHHHHHHHHHHHHHHcCCceEEecCCEEEEEEECCCcCC
Confidence 334445677888899987665433221 24 222222110 01124578889999999999999999
Q ss_pred hhhHHHHHHHHHHhCCCcEEEEEecCceeEEEeCCCch
Q 008621 408 QYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKL 445 (559)
Q Consensus 408 ~~g~larIf~~L~~~gI~Vd~IstSe~sIs~~v~~~~~ 445 (559)
.||+++++|+.|+++||+|.++++|+.+++|.++.++.
T Consensus 116 ~~Gv~a~i~~aL~~~~InI~~istse~~is~vv~~~d~ 153 (167)
T 2re1_A 116 HVGVAAKIFRTLAEEGINIQMISTSEIKVSVLIDEKYM 153 (167)
T ss_dssp CCCHHHHHHHHHHHTTCCCCEEEECSSEEEEEEEGGGH
T ss_pred CcCHHHHHHHHHHHCCCcEEEEEcccCEEEEEEeHHHH
Confidence 99999999999999999999999999999999987654
No 57
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}
Probab=98.07 E-value=3.9e-06 Score=77.36 Aligned_cols=68 Identities=25% Similarity=0.336 Sum_probs=61.4
Q ss_pred hceeecccceeEEEEEee-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEeccc-HHHHHHHHHH
Q 008621 467 IAIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDE-AEQCVRALHE 536 (559)
Q Consensus 467 ~~~v~~~~~~aiISIVG~-~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d-~~kAv~~LH~ 536 (559)
+..|+..+++++|++.|. |...||+++++|+.|+++||+|.||+| |+.+|+|.|++++ ++++++.|++
T Consensus 9 v~gIa~~~~va~Iti~~~~m~~~~g~~~~if~~La~~~I~vd~I~~--s~~~Isf~v~~~~~~~~il~~l~~ 78 (157)
T 3mah_A 9 IKAVAAKDGITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVDMVAT--SEVGVSLTIDNDKNLPDIVRALSD 78 (157)
T ss_dssp CCEEEEEEEEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCCSCEEC--CSSEEEEEESCCTTHHHHHHHHTT
T ss_pred eEEEEecCCEEEEEEEeCCCCCchhHHHHHHHHHHHcCCCEEEEEe--cCCEEEEEECChHHHHHHHHHHhc
Confidence 456888899999999997 888999999999999999999999998 6889999999988 7788888876
No 58
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=98.04 E-value=9.8e-06 Score=76.61 Aligned_cols=103 Identities=14% Similarity=0.258 Sum_probs=73.7
Q ss_pred CcchHhHHHHHHhCCCCEEEecCCCCCC-CC-eEE---ecCCCCcc-----------ceeeEEeeecCeEEEEEEecCcc
Q 008621 343 QVLHPQSMRPAREGDIPVRVKNSYNPNA-PG-TLI---RRSRDMSK-----------AVLTSIVLKRNVTMLDIVSTRML 406 (559)
Q Consensus 343 ~vlhp~a~~~a~~~~Ipv~I~n~~~p~~-~G-T~I---~~~~~~~~-----------~~It~Is~~~~ialItV~~~~m~ 406 (559)
..+-.+-+..+.++||++.......|+. .| +.| .+..+..+ -....|...+++++|++.|.+|.
T Consensus 28 ~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~~~~a~~~L~~~~~el~~~~v~~~~~va~VsvVG~gm~ 107 (181)
T 3s1t_A 28 PGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVGPAAVEKLDSLRNEIGFSQLLYDDHIGKVSLIGAGMR 107 (181)
T ss_dssp TTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTTHHHHHHHHHHTHHHHCCSEEEEESCEEEEEEEEECCT
T ss_pred cCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhHHHHHHHHHHHHHHhcCcceEEEeCCEEEEEEEecccc
Confidence 3344455677778888765543222321 22 122 22221110 02346778899999999999999
Q ss_pred chhhHHHHHHHHHHhCCCcEEEEEecCceeEEEeCCCch
Q 008621 407 GQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKL 445 (559)
Q Consensus 407 ~~~g~larIf~~L~~~gI~Vd~IstSe~sIs~~v~~~~~ 445 (559)
+.||+++++|+.|+++|||+.|+++|+.+|+|.+++++.
T Consensus 108 ~~~Gvaa~~f~aLa~~~InI~~IstSei~Is~vV~~~d~ 146 (181)
T 3s1t_A 108 SHPGVTATFCEALAAVGVNIELISTSEIRISVLCRDTEL 146 (181)
T ss_dssp TCHHHHHHHHHHHHHTTCCCCEEEEETTEEEEEEEGGGH
T ss_pred cCchHHHHHHHHHHHCCCcEEEEEcCCCEEEEEEeHHHH
Confidence 999999999999999999999999999999999998764
No 59
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=97.52 E-value=0.00019 Score=76.98 Aligned_cols=102 Identities=13% Similarity=0.194 Sum_probs=76.5
Q ss_pred CCcchHhHHHHHHhCCCCEEEecCCCCCCCCeEEecCCCCc---c---------ceeeEEeeecCeEEEEEEecCccchh
Q 008621 342 AQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMS---K---------AVLTSIVLKRNVTMLDIVSTRMLGQY 409 (559)
Q Consensus 342 a~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~---~---------~~It~Is~~~~ialItV~~~~m~~~~ 409 (559)
...+-.+-+..+.+++|++...++. . ..=|...+..+.. . -....|...+++++|++.|.+|.+.+
T Consensus 311 ~~g~~~~if~~l~~~~i~vd~i~~~-~-~~is~~V~~~d~~~~~~~~~~el~~~~~~~~v~v~~~vA~VSvVG~gM~~~~ 388 (446)
T 3tvi_A 311 EVGFCRKILSILEMYGVSFEHMPSG-V-DSVSLVIEDCKLDGKCDKIIEEIKKQCNPDSIEIHPNMALVATVGTGMAKTK 388 (446)
T ss_dssp STTHHHHHHHHHHTTTCCEEEBCEE-T-TEEEEEEEHHHHTTTHHHHHHHHHHHSCCSEEEEEEEEEEEEEECGGGSSCT
T ss_pred cHHHHHHHHHHHHHcCCcEEEEecC-C-CEEEEEEecchHHHHHHHHHHHHHHhcCCCcEEEeCCeEEEEEECCCccCCh
Confidence 3445567788999999998876532 1 1112222221111 0 01246788899999999999999999
Q ss_pred hHHHHHHHHHHhCCCcEEEEE--ecCceeEEEeCCCch
Q 008621 410 GFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKL 445 (559)
Q Consensus 410 g~larIf~~L~~~gI~Vd~Is--tSe~sIs~~v~~~~~ 445 (559)
|+++++|+.|+++||||.||+ +|+.+|+|.|++++.
T Consensus 389 Gvaarif~aLa~~~InI~mIsqgtSei~Is~vV~~~d~ 426 (446)
T 3tvi_A 389 GIANKIFTALSKENVNIRMIDQGSSEINVIVGVETVDF 426 (446)
T ss_dssp THHHHHHHHHHHTTCCEEEEEECSCTTEEEEEEEGGGH
T ss_pred hHHHHHHHHHHHCCCCEEEEEecCCCceEEEEEcHHHH
Confidence 999999999999999999999 789999999998764
No 60
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=97.43 E-value=0.00024 Score=75.76 Aligned_cols=101 Identities=17% Similarity=0.323 Sum_probs=74.5
Q ss_pred cchHhHHHHHHhCCCCEEEec--CCCCCCCC-e---EEecCCCCcc-----------ceeeEEeeecCeEEEEEEecCcc
Q 008621 344 VLHPQSMRPAREGDIPVRVKN--SYNPNAPG-T---LIRRSRDMSK-----------AVLTSIVLKRNVTMLDIVSTRML 406 (559)
Q Consensus 344 vlhp~a~~~a~~~~Ipv~I~n--~~~p~~~G-T---~I~~~~~~~~-----------~~It~Is~~~~ialItV~~~~m~ 406 (559)
.+-.+-++.+.++||++.... +.+ ...| + .+.+..+..+ -....+...++++++++.|.+|.
T Consensus 277 g~~~~If~~La~~~I~vd~I~q~~s~-~~~g~~~isf~v~~~~~~~a~~~l~~~~~~~~~~~v~~~~~~a~vsvVG~gm~ 355 (421)
T 3ab4_A 277 GEAAKVFRALADAEINIDMVLQNVFS-VEDGTTDITFTCPRSDGRRAMEILKKLQVQGNWTNVLYDDQVGKVSLVGAGMK 355 (421)
T ss_dssp THHHHHHHHHHHTTCCCEEEEECCCC---CCEEEEEEEEETTTHHHHHHHHHHHHTTTTCSEEEEECCEEEEEEECGGGT
T ss_pred cHHHHHHHHHHHcCCcEEEEEccCcc-ccCCcceEEEEEechhHHHHHHHHHHHHHHcCCceEEEeCCeEEEEEEccCcc
Confidence 333466888899999977653 221 0124 2 2223221100 01236778899999999999999
Q ss_pred chhhHHHHHHHHHHhCCCcEEEEEecCceeEEEeCCCch
Q 008621 407 GQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKL 445 (559)
Q Consensus 407 ~~~g~larIf~~L~~~gI~Vd~IstSe~sIs~~v~~~~~ 445 (559)
+.+|+++++|+.|+++||||.|+++|+.+++|.++.++.
T Consensus 356 ~~~Gv~a~~f~aL~~~~InI~~is~Se~~is~vV~~~d~ 394 (421)
T 3ab4_A 356 SHPGVTAEFMEALRDVNVNIELISTSEIRISVLIREDDL 394 (421)
T ss_dssp SCTTHHHHHHHHHHHTTCCCCEEEEETTEEEEEEEGGGH
T ss_pred cCccHHHHHHHHHHHCCCCEEEEEcCCCeEEEEEeHHHH
Confidence 999999999999999999999999999999999998764
No 61
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Probab=97.00 E-value=0.0013 Score=71.57 Aligned_cols=108 Identities=15% Similarity=0.245 Sum_probs=79.3
Q ss_pred HHHHHHHHhCCCcEEEEEecC--ceeEEEeCCCchhhHHHHHHHHHHHHHHHHHhhhceeecccceeEEEEEee-ccccc
Q 008621 413 AKVFSTFEDLGISVDVVATSE--VSLSLTLDPSKLWSRELIQQASELDHVVEELEKIAIVNLLQHRSIISLIGN-VQRSS 489 (559)
Q Consensus 413 arIf~~L~~~gI~Vd~IstSe--~sIs~~v~~~~~~~~~~~~~~~~l~~~~~~L~~~~~v~~~~~~aiISIVG~-~~~~~ 489 (559)
.+..+...++||++...++.. ..=++..+.... +-..+..|...+++++|++.|. |...+
T Consensus 293 ~~a~~~a~~~gIpv~I~n~~~p~~~GT~I~~~~~~-----------------~~~~v~gIa~~~~~~~I~i~~~~m~~~~ 355 (510)
T 2cdq_A 293 PQSMRPAREGEIPVRVKNSYNPKAPGTIITKTRDM-----------------TKSILTSIVLKRNVTMLDIASTRMLGQV 355 (510)
T ss_dssp HHHHHHHHHHTCCEEEEETTSTTSCCEEEESCCCC-----------------TTCCEEEEEEEEEEEEEEEECGGGTTCT
T ss_pred HHHHHHHHHCCCeEEEEccCcCCCCCeEEeccccc-----------------cccccccccccCCeEEEEEEcCCCCCcc
Confidence 456666778999987666433 223444433210 0011456888899999999996 88889
Q ss_pred hHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccH------HHHHHHHHHHhc
Q 008621 490 LILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEA------EQCVRALHETFF 539 (559)
Q Consensus 490 gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~------~kAv~~LH~~f~ 539 (559)
|+++++|+.|++++|+|.||++ |+.+|||.|++++. .+.++.+.+++-
T Consensus 356 g~~~~if~~la~~~I~vd~I~s--se~sis~~v~~~~~~~~~~~~~~l~~~~~el~ 409 (510)
T 2cdq_A 356 GFLAKVFSIFEELGISVDVVAT--SEVSISLTLDPSKLWSRELIQQELDHVVEELE 409 (510)
T ss_dssp THHHHHHHHHHHTTCCEEEEEE--ETTEEEEEECCGGGSSSCCCHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCCcEEEEEe--CCCeEEEEEechHhhhhhHHHHHHHHHHHHhC
Confidence 9999999999999999999987 79999999998874 456666666554
No 62
>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*
Probab=96.35 E-value=0.0025 Score=68.39 Aligned_cols=58 Identities=12% Similarity=0.316 Sum_probs=52.5
Q ss_pred eeEEeeecCeEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEE--ecCceeEEEeCCCch
Q 008621 386 LTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKL 445 (559)
Q Consensus 386 It~Is~~~~ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~Is--tSe~sIs~~v~~~~~ 445 (559)
+..+...+++++|++.|.+|.+.+|+.+++|+.|++ |||.||+ +|+.+|+|.|++++.
T Consensus 377 ~~~v~~~~~~a~vsvVG~gm~~~~gv~~~~f~aL~~--ini~mIsqg~Se~~Is~vV~~~d~ 436 (449)
T 2j0w_A 377 LCRVEVEEGLALVALIGNDLSKACGVGKEVFGVLEP--FNIRMICYGASSHNLCFLVPGEDA 436 (449)
T ss_dssp HSCEEEEEEEEEEEEEESSCTTSSSHHHHHHSSCTT--SCCCEEEESSCTTEEEEEEEGGGH
T ss_pred CCeEEEeCCeEEEEEECCCccccccHHHHHHHHHhC--CCeEEEEecCCCcEEEEEEeHHHH
Confidence 346788899999999999999999999999999965 9999999 889999999998864
No 63
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=96.28 E-value=0.14 Score=47.86 Aligned_cols=110 Identities=12% Similarity=0.109 Sum_probs=68.4
Q ss_pred eEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEec----CceeEEEeCCCchhhHHHHHHHHHHHHHHHHHhhhcee
Q 008621 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS----EVSLSLTLDPSKLWSRELIQQASELDHVVEELEKIAIV 470 (559)
Q Consensus 395 ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstS----e~sIs~~v~~~~~~~~~~~~~~~~l~~~~~~L~~~~~v 470 (559)
-..|+|.+. +.||+.+++...|+++|+||.-+.+. ...+.+.+.... ...+.++. .+..+..++.-...+
T Consensus 6 ~~~itv~~~---DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~-~~~~~l~~--~L~~~~~~~~~~~~~ 79 (192)
T 1u8s_A 6 HLVITAVGT---DRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSP-SNITRVET--TLPLLGQQHDLITMM 79 (192)
T ss_dssp EEEEEEEEE---CCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECH-HHHHHHHH--HHHHHHHHHTCEEEE
T ss_pred EEEEEEEcC---CCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCC-CCHHHHHH--HHHHHHHhcCCEEEE
Confidence 356788764 58999999999999999999876432 233344443221 11122222 333333332211111
Q ss_pred ec--------ccceeEEEEEeeccccchHHHHHHHHHHhCCCcEEEEEec
Q 008621 471 NL--------LQHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQG 512 (559)
Q Consensus 471 ~~--------~~~~aiISIVG~~~~~~gv~~ri~~~L~~~~InI~~Isqg 512 (559)
.- .....+|++.| ...||+++++.+.|++.|+||..+.+.
T Consensus 80 ~~~~~~~~~~~~~~~~l~v~~--~D~~Gil~~v~~~l~~~~~nI~~~~~~ 127 (192)
T 1u8s_A 80 KRTSPHDHQTHAYTVEVYVES--DDKLGLTEKFTQFFAQRQIGMASLSAQ 127 (192)
T ss_dssp EEECCCCCCCCSEEEEEEEEE--SCCTTHHHHHHHHHHHTTCCEEEEEEE
T ss_pred EeCCCCCCccCCceEEEEEEe--CCCccHHHHHHHHHHHcCCcHHHhhhh
Confidence 11 01346777777 458999999999999999999887664
No 64
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=94.84 E-value=0.49 Score=44.47 Aligned_cols=108 Identities=10% Similarity=0.123 Sum_probs=70.1
Q ss_pred eEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEe----cCceeEEEeCCCchhhHHHHHHHHHHHHHHHHHhhhc-e
Q 008621 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT----SEVSLSLTLDPSKLWSRELIQQASELDHVVEELEKIA-I 469 (559)
Q Consensus 395 ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~Ist----Se~sIs~~v~~~~~~~~~~~~~~~~l~~~~~~L~~~~-~ 469 (559)
...|+|.+. .++|+.+++...|+++|.||.-..+ ....+.+.+......... .+..+.+.|.... .
T Consensus 5 ~~~ltv~~~---DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~~~~~~~------~~~~l~~~L~~~~~~ 75 (195)
T 2nyi_A 5 SFVVSVAGS---DRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLNAKDGKL------IQSALESALPGFQIS 75 (195)
T ss_dssp EEEEEEEEE---CCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSSSSHH------HHHHHHHHSTTCEEE
T ss_pred EEEEEEEeC---CCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEecCccchh------HHHHHHHHHHHHHHh
Confidence 356788874 6899999999999999999876532 223334444321110000 1233444454321 0
Q ss_pred --e---------ecccceeEEEEEeeccccchHHHHHHHHHHhCCCcEEEEEecC
Q 008621 470 --V---------NLLQHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGA 513 (559)
Q Consensus 470 --v---------~~~~~~aiISIVG~~~~~~gv~~ri~~~L~~~~InI~~Isqga 513 (559)
+ .......+|+|.|. ..||+++++.+.|+++|+||.-+.|..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~iltv~g~--DrpGiva~Vt~~La~~g~nI~~~~~~t 128 (195)
T 2nyi_A 76 TRRASSVAERHVSPDTREYELYVEGP--DSEGIVEAVTAVLAKKGANIVELETET 128 (195)
T ss_dssp EEECCCC----CCTTEEEEEEEEEEE--CCTTHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred cCCeEEEEeCCcCCCCcEEEEEEEeC--CCcCHHHHHHHHHHHcCCCEEEceeee
Confidence 1 11234578999983 589999999999999999999888753
No 65
>1zhv_A Hypothetical protein ATU0741; NESG, ATR8, structural genomics, PSI, protein struc initiative; 1.50A {Agrobacterium tumefaciens str} SCOP: d.58.18.8 d.58.18.8
Probab=94.22 E-value=0.095 Score=46.73 Aligned_cols=89 Identities=15% Similarity=0.132 Sum_probs=69.0
Q ss_pred EEEEecCceeEEEeCCCchhhHHHHHHHHHHHHHHHHHhhhceeecccceeEEEEEee-ccccchHHHHHHHHHHhCCCc
Q 008621 427 DVVATSEVSLSLTLDPSKLWSRELIQQASELDHVVEELEKIAIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVN 505 (559)
Q Consensus 427 d~IstSe~sIs~~v~~~~~~~~~~~~~~~~l~~~~~~L~~~~~v~~~~~~aiISIVG~-~~~~~gv~~ri~~~L~~~~In 505 (559)
..++..+..+|++++.+.+. ..+........+++.|. -..-.|+++.+...|+++||.
T Consensus 34 ~~is~t~eelSvV~~~~~~p---------------------~~~~~~~~wr~i~v~~~l~~~~vGilA~is~pLA~agIs 92 (134)
T 1zhv_A 34 VSITRTDDELSIVCLIDRIP---------------------QDVRVDPGWSCFKFQGPFAFDETGIVLSVISPLSTNGIG 92 (134)
T ss_dssp CEEEECSSCEEEEEEGGGSC---------------------TTSEEEEEEEEEEECSCCCCSSCCHHHHHHHHHHTTTCC
T ss_pred EEEEEcCCeEEEEEehhhCc---------------------cCCccCCCeEEEEEecCCCccHHHHHHHHHHHHHhCCCC
Confidence 34555666788888654210 11344567788999886 456789999999999999999
Q ss_pred EEEEEecCCceEEEEEEecccHHHHHHHHHHHhc
Q 008621 506 VQMISQGASKVNISLIVNDDEAEQCVRALHETFF 539 (559)
Q Consensus 506 I~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~~f~ 539 (559)
+..|++-.++. ++|++++.++|+++|.+..+
T Consensus 93 if~iSty~tD~---IlVp~~~~~~Ai~aL~~~~~ 123 (134)
T 1zhv_A 93 IFVVSTFDGDH---LLVRSNDLEKTADLLANAGH 123 (134)
T ss_dssp CEEEECSSCEE---EEEEGGGHHHHHHHHHHTTC
T ss_pred eEEEEeccccE---EEEeHHHHHHHHHHHHHcCc
Confidence 99999876666 79999999999999998755
No 66
>1zvp_A Hypothetical protein VC0802; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 2.20A {Vibrio cholerae} SCOP: d.58.18.9 d.58.18.9
Probab=94.12 E-value=0.14 Score=45.65 Aligned_cols=86 Identities=19% Similarity=0.176 Sum_probs=65.3
Q ss_pred EEEEecCceeEEEeCCCchhhHHHHHHHHHHHHHHHHHhhhceeecccceeEEEEEee-ccccchHHHHHHHHHHhCCCc
Q 008621 427 DVVATSEVSLSLTLDPSKLWSRELIQQASELDHVVEELEKIAIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVN 505 (559)
Q Consensus 427 d~IstSe~sIs~~v~~~~~~~~~~~~~~~~l~~~~~~L~~~~~v~~~~~~aiISIVG~-~~~~~gv~~ri~~~L~~~~In 505 (559)
.++......+|++++.+.. . + ..+....+...|++.|. -..-.|+++.+...|+++||.
T Consensus 42 ~~i~~t~eelSvV~~~~~a------------~----~----~~l~~~~~wr~i~l~~~~~l~~vGi~a~is~~LA~agIs 101 (133)
T 1zvp_A 42 IATFREPEGLTLVLEAEKA------------Q----Q----AGLESSALFSLITLTVHSSLEAVGLTAAFATKLAEHGIS 101 (133)
T ss_dssp SEEEEETTEEEEEEEHHHH------------H----H----TTCCCCSCEEEEEEECCC--CCSCHHHHHHHHHHHTTCC
T ss_pred eEEEEcCCcEEEEEchHhc------------c----c----cCCccCCCeEEEEEeccCCccHHHHHHHHHHHHHhCCCC
Confidence 3455566778888864311 0 1 12345667889999996 566789999999999999999
Q ss_pred EEEEEecCCceEEEEEEecccHHHHHHHHH
Q 008621 506 VQMISQGASKVNISLIVNDDEAEQCVRALH 535 (559)
Q Consensus 506 I~~IsqgaSe~sIs~vV~~~d~~kAv~~LH 535 (559)
+..|++...+. ++|++++.++|+++|.
T Consensus 102 if~iSty~tDh---IlVp~~~~~~A~~~L~ 128 (133)
T 1zvp_A 102 ANVIAGYYHDH---IFVQKEKAQQALQALG 128 (133)
T ss_dssp CEEEECSSCEE---EEEEGGGHHHHHHHHT
T ss_pred cEEEEeccccE---EEEehhHHHHHHHHHH
Confidence 99999876666 8999999999999885
No 67
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=93.86 E-value=0.14 Score=45.63 Aligned_cols=46 Identities=22% Similarity=0.290 Sum_probs=36.8
Q ss_pred EEEecCccchhhHHHHHHHHHHhCCCcE-EEEEe-cCceeEEEeCCCc
Q 008621 399 DIVSTRMLGQYGFLAKVFSTFEDLGISV-DVVAT-SEVSLSLTLDPSK 444 (559)
Q Consensus 399 tV~~~~m~~~~g~larIf~~L~~~gI~V-d~Ist-Se~sIs~~v~~~~ 444 (559)
++.+.+|.+.||.++++|+.|+++|||+ .++++ ++...++.++.++
T Consensus 73 svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~~d 120 (144)
T 2f06_A 73 DVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSN 120 (144)
T ss_dssp EEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESC
T ss_pred eEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEeCC
Confidence 4555568899999999999999999999 45666 6777787776554
No 68
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=85.42 E-value=10 Score=39.18 Aligned_cols=112 Identities=13% Similarity=0.188 Sum_probs=68.7
Q ss_pred eEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEecC----ceeEEEeCCCchh-hHHHHHHHHHHHHHHHHHhhhce
Q 008621 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSE----VSLSLTLDPSKLW-SRELIQQASELDHVVEELEKIAI 469 (559)
Q Consensus 395 ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstSe----~sIs~~v~~~~~~-~~~~~~~~~~l~~~~~~L~~~~~ 469 (559)
..+|++.+. .+||+.+++...|+++|+||.-+.+.. ....+.++-.... ..+.++. .+..+-+++.-...
T Consensus 12 ~~~lt~~g~---Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~~~~~~~~l~~--~l~~~~~~~~~~~~ 86 (415)
T 3p96_A 12 SVLITVTGV---DQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPADVADGPALRH--DVEAAIRKVGLDVS 86 (415)
T ss_dssp EEEEEEEEE---CCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECHHHHTSHHHHH--HHHHHHHHTTCEEE
T ss_pred eEEEEEEcC---CCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecCCcCCHHHHHH--HHHHHHHHcCeEEE
Confidence 357888875 689999999999999999998776432 2222222211110 1011221 33333333331111
Q ss_pred ee--------cccceeEEEEEeeccccchHHHHHHHHHHhCCCcEEEEEec
Q 008621 470 VN--------LLQHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQG 512 (559)
Q Consensus 470 v~--------~~~~~aiISIVG~~~~~~gv~~ri~~~L~~~~InI~~Isqg 512 (559)
+. ...+..++.++|.- .+++...++...+++.|+|+.-+..-
T Consensus 87 ~~~~~~~~~~~~~~~~~~~llg~~-~~~~~~~~i~~~l~~~~~Ni~~l~~~ 136 (415)
T 3p96_A 87 IERSDDVPIIREPSTHTIFVLGRP-ITAAAFGAVAREVAALGVNIDLIRGV 136 (415)
T ss_dssp EEECSSSCSSCCCCSEEEEEEESS-CCHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred EEECCcccccCCCCcEEEEEEeCC-CCHHHHHHHHHHHHHcCCCccceeec
Confidence 11 12356889999951 26789999999999999998865543
No 69
>1zhv_A Hypothetical protein ATU0741; NESG, ATR8, structural genomics, PSI, protein struc initiative; 1.50A {Agrobacterium tumefaciens str} SCOP: d.58.18.8 d.58.18.8
Probab=73.46 E-value=8.6 Score=33.95 Aligned_cols=51 Identities=18% Similarity=0.216 Sum_probs=42.7
Q ss_pred EeeecCeEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEecCceeEEE
Q 008621 389 IVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLT 439 (559)
Q Consensus 389 Is~~~~ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstSe~sIs~~ 439 (559)
+........|+|.+..-++..|+++.+.+.|+++||++..+++.....-|+
T Consensus 56 ~~~~~~wr~i~v~~~l~~~~vGilA~is~pLA~agIsif~iSty~tD~IlV 106 (134)
T 1zhv_A 56 VRVDPGWSCFKFQGPFAFDETGIVLSVISPLSTNGIGIFVVSTFDGDHLLV 106 (134)
T ss_dssp SEEEEEEEEEEECSCCCCSSCCHHHHHHHHHHTTTCCCEEEECSSCEEEEE
T ss_pred CccCCCeEEEEEecCCCccHHHHHHHHHHHHHhCCCCeEEEEeccccEEEE
Confidence 455677888999876667889999999999999999999999887765444
No 70
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=72.99 E-value=15 Score=29.01 Aligned_cols=57 Identities=19% Similarity=0.285 Sum_probs=37.9
Q ss_pred eEEEEEeeccccchHHHHHHHHHHhCCCcEEEEEecCC--ceEEEEEE--ec-ccHHHHHHHHH
Q 008621 477 SIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGAS--KVNISLIV--ND-DEAEQCVRALH 535 (559)
Q Consensus 477 aiISIVG~~~~~~gv~~ri~~~L~~~~InI~~IsqgaS--e~sIs~vV--~~-~d~~kAv~~LH 535 (559)
..|++.| ...||+++++.+.|++.|+||.-+.+... .-.+.+.+ +. .+.++..+.|.
T Consensus 6 ~~l~v~~--~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~~~~l~~l~~~L~ 67 (91)
T 1zpv_A 6 AIITVVG--KDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQDFTYLRNEFE 67 (91)
T ss_dssp EEEEEEE--SCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSCCCHHHHHHHHH
T ss_pred EEEEEEE--CCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCCCCCHHHHHHHHH
Confidence 4566666 46899999999999999999998877532 22333333 33 34455555554
No 71
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=72.87 E-value=56 Score=30.52 Aligned_cols=89 Identities=11% Similarity=0.215 Sum_probs=53.0
Q ss_pred cchhhHHHHHHHHHHhCCCcEEEEEec---C---ceeEEEeCCCchhhHHHHHHHHHHHHHHHHHhhh---ceeecc---
Q 008621 406 LGQYGFLAKVFSTFEDLGISVDVVATS---E---VSLSLTLDPSKLWSRELIQQASELDHVVEELEKI---AIVNLL--- 473 (559)
Q Consensus 406 ~~~~g~larIf~~L~~~gI~Vd~IstS---e---~sIs~~v~~~~~~~~~~~~~~~~l~~~~~~L~~~---~~v~~~--- 473 (559)
.+.||.++++...|++.|+||+.++.. + ..+++.++.++- .++++.++|.+. ..|...
T Consensus 37 eN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~e~----------~ieqL~kQL~KLidVikV~dl~~~ 106 (193)
T 2fgc_A 37 HNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDK----------TIEQIEKQAYKLVEVVKVTPIDPL 106 (193)
T ss_dssp ECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECTT----------HHHHHHHHHTTSTTEEEEEECCSS
T ss_pred CCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECCHH----------HHHHHHHHhcCcCceEEEEEecCC
Confidence 468999999999999999999977532 2 346677764321 344556666662 222222
Q ss_pred ------cceeEEEEEeeccccchHHHHHHHHHHhCCCcEEEE
Q 008621 474 ------QHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMI 509 (559)
Q Consensus 474 ------~~~aiISIVG~~~~~~gv~~ri~~~L~~~~InI~~I 509 (559)
+.+++|-|-.... -..+++...-.+-+|.-+
T Consensus 107 ~~~~v~REl~LiKV~~~~~-----r~ei~~i~~~fra~ivDv 143 (193)
T 2fgc_A 107 PENRVEREMALIKVRFDED-----KQEIFQLVEIFRGKIIDV 143 (193)
T ss_dssp GGGEEEEEEEEEEEECSSC-----HHHHHHHHHHTTCEEEEE
T ss_pred CCccceeEEEEEEEeCCcC-----HHHHHHHHHHcCCEEEEE
Confidence 2346666644321 345555555445555544
No 72
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=72.36 E-value=53 Score=29.80 Aligned_cols=90 Identities=11% Similarity=0.197 Sum_probs=53.0
Q ss_pred cchhhHHHHHHHHHHhCCCcEEEEEe--cC----ceeEEEeCCCchhhHHHHHHHHHHHHHHHHHhhhc---eee-----
Q 008621 406 LGQYGFLAKVFSTFEDLGISVDVVAT--SE----VSLSLTLDPSKLWSRELIQQASELDHVVEELEKIA---IVN----- 471 (559)
Q Consensus 406 ~~~~g~larIf~~L~~~gI~Vd~Ist--Se----~sIs~~v~~~~~~~~~~~~~~~~l~~~~~~L~~~~---~v~----- 471 (559)
.+.||.++++...|++.|+|++.++. ++ ..++|.++.++ + .++++.++|.+.. .+.
T Consensus 11 ~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~d~----~------~leqI~kqL~Kl~dV~~V~r~~~~ 80 (164)
T 2f1f_A 11 ENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDE----K------VLEQIEKQLHKLVDVLRVSELGQG 80 (164)
T ss_dssp ECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESCH----H------HHHHHHHHHHHSTTEEEEEEGGGS
T ss_pred eCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEeccH----H------HHHHHHHHHcCCCCEEEEEEcCCc
Confidence 46899999999999999999987753 22 34677787431 1 3455666666531 111
Q ss_pred --cccceeEEEEEeeccccchHHHHHHHHHHhCCCcEEEE
Q 008621 472 --LLQHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMI 509 (559)
Q Consensus 472 --~~~~~aiISIVG~~~~~~gv~~ri~~~L~~~~InI~~I 509 (559)
+...+++|-+-... .--..+++...-.+-+|.-+
T Consensus 81 ~~v~rEl~liKv~~~~----~~r~~i~~~~~~fra~ivdv 116 (164)
T 2f1f_A 81 AHVEREIMLVKIQASG----YGRDEVKRNTEIFRGQIIDV 116 (164)
T ss_dssp CEEEEEEEEEEEECCT----HHHHHHHHHHHHTTCEEEEE
T ss_pred ccceeEEEEEEEECCc----ccHHHHHHHHHHcCCEEEEE
Confidence 22345666664432 12234555555445555444
No 73
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=70.16 E-value=11 Score=29.43 Aligned_cols=32 Identities=9% Similarity=0.235 Sum_probs=25.8
Q ss_pred EEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEe
Q 008621 397 MLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT 431 (559)
Q Consensus 397 lItV~~~~m~~~~g~larIf~~L~~~gI~Vd~Ist 431 (559)
.|.+.. .+.||.++++.+.|++.|+|+..+..
T Consensus 7 ~l~v~~---~Dr~G~L~~I~~~la~~~inI~~i~~ 38 (88)
T 2ko1_A 7 GIRIVG---EDKNGMTNQITGVISKFDTNIRTIVL 38 (88)
T ss_dssp EEEEEE---ECCTTHHHHHHHHHTTSSSCEEEEEE
T ss_pred EEEEEE---ECCCcHHHHHHHHHHHCCCCeEEEEE
Confidence 345543 46899999999999999999987754
No 74
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=69.86 E-value=17 Score=28.66 Aligned_cols=33 Identities=21% Similarity=0.521 Sum_probs=27.6
Q ss_pred EEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEe
Q 008621 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT 431 (559)
Q Consensus 396 alItV~~~~m~~~~g~larIf~~L~~~gI~Vd~Ist 431 (559)
..|++.+. +.||.++++.+.|+++|+||.-+.+
T Consensus 6 ~~l~v~~~---DrpGila~vt~~la~~~~NI~~i~~ 38 (91)
T 1zpv_A 6 AIITVVGK---DKSGIVAGVSGKIAELGLNIDDISQ 38 (91)
T ss_dssp EEEEEEES---CCTTHHHHHHHHHHHTTCEEEEEEE
T ss_pred EEEEEEEC---CCCCHHHHHHHHHHHcCCCEEEEEe
Confidence 45677764 6899999999999999999988753
No 75
>1zvp_A Hypothetical protein VC0802; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 2.20A {Vibrio cholerae} SCOP: d.58.18.9 d.58.18.9
Probab=69.69 E-value=8.5 Score=33.93 Aligned_cols=53 Identities=15% Similarity=0.193 Sum_probs=40.9
Q ss_pred eeecCeEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEecCceeEEEeCCC
Q 008621 390 VLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPS 443 (559)
Q Consensus 390 s~~~~ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstSe~sIs~~v~~~ 443 (559)
........|++.+..-+...|+++.+.+.|+++||++..+++.....-| |+.+
T Consensus 66 ~~~~~wr~i~l~~~~~l~~vGi~a~is~~LA~agIsif~iSty~tDhIl-Vp~~ 118 (133)
T 1zvp_A 66 ESSALFSLITLTVHSSLEAVGLTAAFATKLAEHGISANVIAGYYHDHIF-VQKE 118 (133)
T ss_dssp CCCSCEEEEEEECCC--CCSCHHHHHHHHHHHTTCCCEEEECSSCEEEE-EEGG
T ss_pred ccCCCeEEEEEeccCCccHHHHHHHHHHHHHhCCCCcEEEEeccccEEE-Eehh
Confidence 3456778888887666788999999999999999999999988766544 4443
No 76
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=68.62 E-value=7.8 Score=35.41 Aligned_cols=52 Identities=12% Similarity=0.319 Sum_probs=37.1
Q ss_pred cccchHHHHHHHHHHhCCCcEEEEEecCCc----eEEEEEEecccHHHHHHHHHHHhc
Q 008621 486 QRSSLILEKAFRVLRRSGVNVQMISQGASK----VNISLIVNDDEAEQCVRALHETFF 539 (559)
Q Consensus 486 ~~~~gv~~ri~~~L~~~~InI~~IsqgaSe----~sIs~vV~~~d~~kAv~~LH~~f~ 539 (559)
.+.||+++++...+++.|+||..++.+.++ ..+.+.++.+ ++.++.|-+.+.
T Consensus 11 ~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~d--~~~leqI~kqL~ 66 (164)
T 2f1f_A 11 ENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGD--EKVLEQIEKQLH 66 (164)
T ss_dssp ECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESC--HHHHHHHHHHHH
T ss_pred eCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEecc--HHHHHHHHHHHc
Confidence 468999999999999999999877766443 4477788744 344444444443
No 77
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=68.13 E-value=53 Score=29.84 Aligned_cols=91 Identities=14% Similarity=0.196 Sum_probs=53.5
Q ss_pred cchhhHHHHHHHHHHhCCCcEEEEEe--cC----ceeEEEeCCCchhhHHHHHHHHHHHHHHHHHhhhc---eee-----
Q 008621 406 LGQYGFLAKVFSTFEDLGISVDVVAT--SE----VSLSLTLDPSKLWSRELIQQASELDHVVEELEKIA---IVN----- 471 (559)
Q Consensus 406 ~~~~g~larIf~~L~~~gI~Vd~Ist--Se----~sIs~~v~~~~~~~~~~~~~~~~l~~~~~~L~~~~---~v~----- 471 (559)
.+.||.++++...|++.|+|++.++. ++ ..++|.++.++ + .++++.++|.+.. .+.
T Consensus 12 eNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~d~----~------~leql~kQL~Kl~dV~~V~~~~~~ 81 (165)
T 2pc6_A 12 ENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPD----E------IVEQITKQLNKLIEVVKLIDLSSE 81 (165)
T ss_dssp ECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECH----H------HHHHHHHHHHHSTTEEEEEEGGGS
T ss_pred eCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEeccH----H------HHHHHHHHhcCCCCEEEEEEcCCc
Confidence 46899999999999999999987753 22 34677776331 1 3455566666531 111
Q ss_pred --cccceeEEEEEeeccccchHHHHHHHHHHhCCCcEEEEE
Q 008621 472 --LLQHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMIS 510 (559)
Q Consensus 472 --~~~~~aiISIVG~~~~~~gv~~ri~~~L~~~~InI~~Is 510 (559)
+...+++|-+-... .--..+++...-.+-+|.-++
T Consensus 82 ~~v~rEl~liKv~~~~----~~r~~i~~~~~~fra~ivdv~ 118 (165)
T 2pc6_A 82 GYVERELMLVKVRAVG----KDREEMKRLADIFRGNIIDVT 118 (165)
T ss_dssp CEEEEEEEEEEEECCT----HHHHHHHHHHHHTTCEEEEEE
T ss_pred ceeeeEEEEEEEeCCc----ccHHHHHHHHHHcCCEEEEEc
Confidence 12345666664432 122445555555555665554
No 78
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=67.59 E-value=13 Score=34.16 Aligned_cols=48 Identities=13% Similarity=0.310 Sum_probs=36.0
Q ss_pred eeEEEEEeeccccchHHHHHHHHHHhCCCcEEEEEecC--CceEEEEEEecc
Q 008621 476 RSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGA--SKVNISLIVNDD 525 (559)
Q Consensus 476 ~aiISIVG~~~~~~gv~~ri~~~L~~~~InI~~Isqga--Se~sIs~vV~~~ 525 (559)
..+|+|.|. ..||+++++...|++.|+||.-+.|.. ..-.+.+++...
T Consensus 6 ~~~itv~~~--DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~ 55 (192)
T 1u8s_A 6 HLVITAVGT--DRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS 55 (192)
T ss_dssp EEEEEEEEE--CCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC
T ss_pred EEEEEEEcC--CCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecC
Confidence 357888883 589999999999999999999877643 334455666543
No 79
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=66.90 E-value=7.1 Score=35.74 Aligned_cols=53 Identities=13% Similarity=0.310 Sum_probs=38.2
Q ss_pred ccccchHHHHHHHHHHhCCCcEEEEEecCCc----eEEEEEEecccHHHHHHHHHHHhc
Q 008621 485 VQRSSLILEKAFRVLRRSGVNVQMISQGASK----VNISLIVNDDEAEQCVRALHETFF 539 (559)
Q Consensus 485 ~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe----~sIs~vV~~~d~~kAv~~LH~~f~ 539 (559)
..+.||+++++...+++.|+||..++.+.++ ..+.++++.+ ++.++.|-+.+.
T Consensus 11 veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~d--~~~leql~kQL~ 67 (165)
T 2pc6_A 11 MENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGP--DEIVEQITKQLN 67 (165)
T ss_dssp EECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEEC--HHHHHHHHHHHH
T ss_pred EeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEecc--HHHHHHHHHHhc
Confidence 3468999999999999999999877766443 4477778744 445555555544
No 80
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=66.79 E-value=6.5 Score=36.93 Aligned_cols=54 Identities=19% Similarity=0.455 Sum_probs=39.0
Q ss_pred ccccchHHHHHHHHHHhCCCcEEEEEecCCc----eEEEEEEecccHHHHHHHHHHHhcc
Q 008621 485 VQRSSLILEKAFRVLRRSGVNVQMISQGASK----VNISLIVNDDEAEQCVRALHETFFE 540 (559)
Q Consensus 485 ~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe----~sIs~vV~~~d~~kAv~~LH~~f~~ 540 (559)
+.+.||+++|+...+++.|+||..++.+.++ ..+.++|+.+ +++++.|-+.+..
T Consensus 36 VeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~--e~~ieqL~kQL~K 93 (193)
T 2fgc_A 36 VHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD--DKTIEQIEKQAYK 93 (193)
T ss_dssp EECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC--TTHHHHHHHHHTT
T ss_pred ECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC--HHHHHHHHHHhcC
Confidence 4578999999999999999999987775332 3467778754 4455555555543
No 81
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=61.09 E-value=23 Score=27.48 Aligned_cols=42 Identities=12% Similarity=0.178 Sum_probs=30.3
Q ss_pred cccchHHHHHHHHHHhCCCcEEEEEecCCc--eEEEEEEecccH
Q 008621 486 QRSSLILEKAFRVLRRSGVNVQMISQGASK--VNISLIVNDDEA 527 (559)
Q Consensus 486 ~~~~gv~~ri~~~L~~~~InI~~IsqgaSe--~sIs~vV~~~d~ 527 (559)
.+.||+++++.+.|++.|+||..+.+.... ..+.+.+.-.+.
T Consensus 13 ~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~~~ 56 (88)
T 2ko1_A 13 EDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVKNT 56 (88)
T ss_dssp ECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEESSH
T ss_pred ECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEECCH
Confidence 467999999999999999999987775322 234444554443
No 82
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=53.78 E-value=27 Score=32.03 Aligned_cols=69 Identities=14% Similarity=0.262 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHcCCceEEecccceEEEEecCCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeec
Q 008621 204 MSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLG 283 (559)
Q Consensus 204 lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlg 283 (559)
-|+..+++.|++.|+....+. ++-+ +...+.+.+... ++..++.|++|-.|.+.
T Consensus 23 tN~~~l~~~L~~~G~~v~~~~-----iv~D-----------d~~~I~~~l~~a-~~~~DlVittGG~g~~~--------- 76 (172)
T 3kbq_A 23 TNAAFIGNFLTYHGYQVRRGF-----VVMD-----------DLDEIGWAFRVA-LEVSDLVVSSGGLGPTF--------- 76 (172)
T ss_dssp HHHHHHHHHHHHTTCEEEEEE-----EECS-----------CHHHHHHHHHHH-HHHCSEEEEESCCSSST---------
T ss_pred HHHHHHHHHHHHCCCEEEEEE-----EeCC-----------CHHHHHHHHHHH-HhcCCEEEEcCCCcCCc---------
Confidence 467778899999999765432 3322 234455555543 34457888888565442
Q ss_pred CCcchhHHHHHHHHcCcC
Q 008621 284 RGGSDLTATTIGKALGLQ 301 (559)
Q Consensus 284 RgGSD~tAa~lA~~L~A~ 301 (559)
-|+|.-.++.+++.+
T Consensus 77 ---~D~T~ea~a~~~~~~ 91 (172)
T 3kbq_A 77 ---DDMTVEGFAKCIGQD 91 (172)
T ss_dssp ---TCCHHHHHHHHHTCC
T ss_pred ---ccchHHHHHHHcCCC
Confidence 699999999999964
No 83
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=48.45 E-value=53 Score=30.22 Aligned_cols=35 Identities=14% Similarity=0.154 Sum_probs=29.3
Q ss_pred CeEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEe
Q 008621 394 NVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT 431 (559)
Q Consensus 394 ~ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~Ist 431 (559)
+-.+|+|.+. ..||++++|.+.|+++|+||.-+.+
T Consensus 92 ~~~iltv~g~---DrpGiva~Vt~~La~~g~nI~~~~~ 126 (195)
T 2nyi_A 92 REYELYVEGP---DSEGIVEAVTAVLAKKGANIVELET 126 (195)
T ss_dssp EEEEEEEEEE---CCTTHHHHHHHHHHHTTCEEEEEEE
T ss_pred cEEEEEEEeC---CCcCHHHHHHHHHHHcCCCEEEcee
Confidence 3457788874 5899999999999999999988754
No 84
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=45.81 E-value=1.7e+02 Score=28.88 Aligned_cols=111 Identities=12% Similarity=0.067 Sum_probs=68.3
Q ss_pred CCCccccccCHHHHHHHHHcCC-----CcchHhHHHHHHhCCCCEEEecCCCCCCCCeEEecCCCCccc--------eee
Q 008621 321 PHAKPVPYLTFDEAAELAYFGA-----QVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKA--------VLT 387 (559)
Q Consensus 321 ~~a~~i~~ls~~Ea~eLa~~Ga-----~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~~--------~It 387 (559)
|+++.++.-|-.+|.++...+. -+=.+.| |..+|.+|.-.|-.|-.+--|++.--...... .-+
T Consensus 120 p~~~~~~~~sTA~AA~~va~~~~~~~AAIas~~A---A~~ygL~il~~~I~D~~~N~TRF~vl~~~~~~~~~~~~~~~~~ 196 (283)
T 2qmx_A 120 PQIRAEAAYDTAGSAKMVAESRDKSALAIASKRA---GELYGLDILKENLADEEWNITRFFCIAHENNPDISHLKVRPDV 196 (283)
T ss_dssp TTSEEEECSCHHHHHHHHHHTTCTTEEEEECHHH---HHHTTCEEEESSCSSCCCCEEEEEEEEETTCCCCTTSSSCCEE
T ss_pred CCceEEEcCCHHHHHHHHHhCCCCCeEEeCCHHH---HHHcCCceecccCcCCCCCeeeEEEEecCccccccccccCCCC
Confidence 4678888889999888876542 1222333 45689999888877755566766422110000 111
Q ss_pred EEeeecCeEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEec-----CceeEEEeC
Q 008621 388 SIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS-----EVSLSLTLD 441 (559)
Q Consensus 388 ~Is~~~~ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstS-----e~sIs~~v~ 441 (559)
+ .+-+.|-+.- .+.||-+.++++.|+.+|||.--|-+- .-.-.|.+|
T Consensus 197 ~----~~ktsl~f~~---~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD 248 (283)
T 2qmx_A 197 A----RQKTSIVFAL---PNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYAD 248 (283)
T ss_dssp E----EEEEEEEEEE---ECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEE
T ss_pred C----CceEEEEEEc---CCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEE
Confidence 1 1223333332 257999999999999999998888532 234566664
No 85
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=44.37 E-value=29 Score=33.20 Aligned_cols=111 Identities=14% Similarity=0.205 Sum_probs=61.5
Q ss_pred cchhhHHHHHHHHHHhCCCcEEEEEecC---------ceeEEEeCCCchhhHHHHHHHHHHHHHHHHHhhhc---eeecc
Q 008621 406 LGQYGFLAKVFSTFEDLGISVDVVATSE---------VSLSLTLDPSKLWSRELIQQASELDHVVEELEKIA---IVNLL 473 (559)
Q Consensus 406 ~~~~g~larIf~~L~~~gI~Vd~IstSe---------~sIs~~v~~~~~~~~~~~~~~~~l~~~~~~L~~~~---~v~~~ 473 (559)
.+.+|.++++.+.|+++++|+..+.++. ..+.+-+++. .+++++++|+++. .+...
T Consensus 12 ~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV~d~------------~Le~LL~kLrkI~gV~~V~Rv 79 (223)
T 1y7p_A 12 ENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGG------------DFEKILERVKTFDYIIEIEEE 79 (223)
T ss_dssp ECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSS------------CHHHHHHHHHTCTTEEEEEEE
T ss_pred cCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEECCC------------CHHHHHHHHhCCCCeeEEEEE
Confidence 4689999999999999999999986432 1344444433 2445566666543 33322
Q ss_pred cce-----eEEEEEeeccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHH
Q 008621 474 QHR-----SIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRA 533 (559)
Q Consensus 474 ~~~-----aiISIVG~~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~ 533 (559)
.++ .-|-++|...+..+++--..+--.++||.=.-||. +. .-++-+++..+|+.+
T Consensus 80 ~~~~~i~gkrvii~gggaqv~qva~gai~eadrhnirgerisv--dt---~p~vge~~l~~av~a 139 (223)
T 1y7p_A 80 ESFERVFGKRVIILGGGALVSQVAIGAISEADRHNLRGERISV--DT---MPVVGEEEIAEAVKA 139 (223)
T ss_dssp CCHHHHTCEEEEEEECHHHHHHHHHHHHHHHHHHHHTSCCEEE--EE---EECCSHHHHHHHHHH
T ss_pred cchhhhcCcEEEEECCcHHHHHHHHhhcchhhhcccccceeee--ec---ceecCHHHHHHHHHH
Confidence 222 44667787666666666666666666555444543 11 134555555555544
No 86
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=38.78 E-value=51 Score=32.93 Aligned_cols=34 Identities=12% Similarity=-0.043 Sum_probs=30.4
Q ss_pred eEEEEEeeccccchHHHHHHHHHHhCCCcEEEEEec
Q 008621 477 SIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQG 512 (559)
Q Consensus 477 aiISIVG~~~~~~gv~~ri~~~L~~~~InI~~Isqg 512 (559)
.+++++|. ..||+++++.+.|+++|+||.-++|.
T Consensus 23 ~iLtv~c~--DrpGIVa~VS~~La~~g~NI~d~~q~ 56 (302)
T 3o1l_A 23 FRLVIACP--DRVGIVAKVSNFLASHNGWITEASHH 56 (302)
T ss_dssp EEEEEEEE--CCTTHHHHHHHHHHHTTCCEEEEEEE
T ss_pred EEEEEECC--CCCCHHHHHHHHHHHCCCCEEEeeEE
Confidence 67888884 57899999999999999999998885
No 87
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=38.67 E-value=57 Score=33.48 Aligned_cols=36 Identities=25% Similarity=0.373 Sum_probs=31.1
Q ss_pred eeEEEEEeeccccchHHHHHHHHHHhCCCcEEEEEecC
Q 008621 476 RSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGA 513 (559)
Q Consensus 476 ~aiISIVG~~~~~~gv~~ri~~~L~~~~InI~~Isqga 513 (559)
..+|+++|. ..||+.+++...|+++|+||.-++|..
T Consensus 12 ~~~lt~~g~--Dr~Giv~~vs~~l~~~~~nI~d~~q~~ 47 (415)
T 3p96_A 12 SVLITVTGV--DQPGVTATLFEVLSRHGVELLNVEQVV 47 (415)
T ss_dssp EEEEEEEEE--CCTTHHHHHHHHHTTTTCEEEEEEEEE
T ss_pred eEEEEEEcC--CCCCHHHHHHHHHHHCCCCEEEeeeEE
Confidence 467899883 578999999999999999999888754
No 88
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=38.58 E-value=53 Score=29.75 Aligned_cols=68 Identities=12% Similarity=0.120 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHcCCceEEecccceEEEEecCCCCceeeecchHHHHHHHhhchhc-CCcEEEEcCCCcccCCCCceeee
Q 008621 204 MSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWIT-DLAIPIVTGFLGKAWRTCAITTL 282 (559)
Q Consensus 204 lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~-~~~ipVv~Gfig~~~~~G~~~tl 282 (559)
-|+..+++.|++.|+..... +++.+ +...+.+.+...+.+ ..++.|++|-.|.+.
T Consensus 28 ~n~~~l~~~L~~~G~~v~~~-----~iv~D-----------d~~~i~~~l~~a~~~~~~DlVittGG~g~~~-------- 83 (172)
T 1mkz_A 28 TSGHYLRDSAQEAGHHVVDK-----AIVKE-----------NRYAIRAQVSAWIASDDVQVVLITGGTGLTE-------- 83 (172)
T ss_dssp HHHHHHHHHHHHTTCEEEEE-----EEECS-----------CHHHHHHHHHHHHHSSSCCEEEEESCCSSST--------
T ss_pred ccHHHHHHHHHHCCCeEeEE-----EEeCC-----------CHHHHHHHHHHHHhcCCCCEEEeCCCCCCCC--------
Confidence 46777889999999876443 23322 234455555543222 256888888565442
Q ss_pred cCCcchhHHHHHHHHcC
Q 008621 283 GRGGSDLTATTIGKALG 299 (559)
Q Consensus 283 gRgGSD~tAa~lA~~L~ 299 (559)
-|+|.-.++.+++
T Consensus 84 ----~D~t~ea~~~~~~ 96 (172)
T 1mkz_A 84 ----GDQAPEALLPLFD 96 (172)
T ss_dssp ----TCCHHHHHGGGCS
T ss_pred ----CCCHHHHHHHHhc
Confidence 5888888888775
No 89
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=35.76 E-value=47 Score=32.90 Aligned_cols=60 Identities=15% Similarity=0.170 Sum_probs=0.0
Q ss_pred eEEEEEeeccccchHHHHHHHHHHhCCCcEEEEEe----cCCceEEEEEEecccHHHHHHHHHHHh
Q 008621 477 SIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQ----GASKVNISLIVNDDEAEQCVRALHETF 538 (559)
Q Consensus 477 aiISIVG~~~~~~gv~~ri~~~L~~~~InI~~Isq----gaSe~sIs~vV~~~d~~kAv~~LH~~f 538 (559)
.+++++| ...||+++++.+.|+++|+||.-++| ....-.+-+.++-.+...-...|.++|
T Consensus 7 ~iLtv~g--~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~L~~~f 70 (288)
T 3obi_A 7 YVLTLSC--PDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGF 70 (288)
T ss_dssp EEEEEEE--ECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSCCCCHHHHHHHH
T ss_pred EEEEEEC--CCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCCCCCHHHHHHHH
No 90
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=34.82 E-value=70 Score=31.64 Aligned_cols=34 Identities=12% Similarity=-0.137 Sum_probs=30.2
Q ss_pred eEEEEEeeccccchHHHHHHHHHHhCCCcEEEEEec
Q 008621 477 SIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQG 512 (559)
Q Consensus 477 aiISIVG~~~~~~gv~~ri~~~L~~~~InI~~Isqg 512 (559)
.+++++|. ..||+++++.+.|+++|+||.-++|.
T Consensus 9 ~vLtv~c~--DrpGIVa~Vs~~La~~g~NI~d~~q~ 42 (286)
T 3n0v_A 9 WILTADCP--SMLGTVDVVTRYLFEQRCYVTEHHSF 42 (286)
T ss_dssp EEEEEEEE--CCTTHHHHHHHHHHHTTCEEEEEEEE
T ss_pred EEEEEEeC--CCCCHHHHHHHHHHHCCCCeeeeeee
Confidence 57888883 57899999999999999999999886
No 91
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=33.09 E-value=78 Score=28.40 Aligned_cols=67 Identities=16% Similarity=0.292 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHcCCceEEecccceEEEEecCCCCceeeecchHHHHHHHhhchhc--CCcEEEEcCCCcccCCCCceee
Q 008621 204 MSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWIT--DLAIPIVTGFLGKAWRTCAITT 281 (559)
Q Consensus 204 lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~--~~~ipVv~Gfig~~~~~G~~~t 281 (559)
-|+..+++.|++.|+..... +++.+ +...+.+.+... ++ ..++.|++|-.|.+.
T Consensus 31 sn~~~l~~~L~~~G~~v~~~-----~iv~D-----------d~~~i~~~l~~~-~~~~~~DlVittGG~g~g~------- 86 (169)
T 1y5e_A 31 KSGQLLHELLKEAGHKVTSY-----EIVKD-----------DKESIQQAVLAG-YHKEDVDVVLTNGGTGITK------- 86 (169)
T ss_dssp HHHHHHHHHHHHHTCEEEEE-----EEECS-----------SHHHHHHHHHHH-HTCTTCSEEEEECCCSSST-------
T ss_pred ChHHHHHHHHHHCCCeEeEE-----EEeCC-----------CHHHHHHHHHHH-HhcCCCCEEEEcCCCCCCC-------
Confidence 46677888999999876443 23322 234456666543 34 456888888565442
Q ss_pred ecCCcchhHHHHHHHHcC
Q 008621 282 LGRGGSDLTATTIGKALG 299 (559)
Q Consensus 282 lgRgGSD~tAa~lA~~L~ 299 (559)
-|+|.-.++.+++
T Consensus 87 -----~D~t~ea~~~~~~ 99 (169)
T 1y5e_A 87 -----RDVTIEAVSALLD 99 (169)
T ss_dssp -----TCCHHHHHHTTCS
T ss_pred -----CCCcHHHHHHHcC
Confidence 5888888887665
No 92
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=30.94 E-value=79 Score=31.34 Aligned_cols=35 Identities=11% Similarity=0.090 Sum_probs=30.7
Q ss_pred eeEEEEEeeccccchHHHHHHHHHHhCCCcEEEEEec
Q 008621 476 RSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQG 512 (559)
Q Consensus 476 ~aiISIVG~~~~~~gv~~ri~~~L~~~~InI~~Isqg 512 (559)
-.+++++|. ..||+++++.+.|+++|+||.-++|.
T Consensus 10 ~~vLtv~c~--Dr~GIVa~Vs~~La~~g~NI~d~~q~ 44 (292)
T 3lou_A 10 QFVLTLSCP--SAAGQVAAVVGLLDRHRCYVDELTVF 44 (292)
T ss_dssp EEEEEEEEE--SCSCHHHHHHHHHHHTTEEEEEEEEE
T ss_pred cEEEEEEcC--CCCCHHHHHHHHHHHCCCCEEeeEEE
Confidence 357888884 57899999999999999999999886
No 93
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=30.88 E-value=85 Score=29.94 Aligned_cols=50 Identities=12% Similarity=0.159 Sum_probs=35.2
Q ss_pred cccchHHHHHHHHHHhCCCcEEEEEecCCc-------eEEEEEEecccHHHHHHHHH
Q 008621 486 QRSSLILEKAFRVLRRSGVNVQMISQGASK-------VNISLIVNDDEAEQCVRALH 535 (559)
Q Consensus 486 ~~~~gv~~ri~~~L~~~~InI~~IsqgaSe-------~sIs~vV~~~d~~kAv~~LH 535 (559)
.+.+|+++++.+.|++.++||..+++.... -.+.+=+++.+.++.++.|.
T Consensus 12 ~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV~d~~Le~LL~kLr 68 (223)
T 1y7p_A 12 ENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGGDFEKILERVK 68 (223)
T ss_dssp ECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSSCHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEECCCCHHHHHHHHh
Confidence 467999999999999999999999987643 34556666666677777665
No 94
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=29.54 E-value=70 Score=28.58 Aligned_cols=66 Identities=18% Similarity=0.133 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHcCCceEEecccceEEEEecCCCCceeeecchHHHHHHHhhchhc--CCcEEEEcCCCcccCCCCceeee
Q 008621 205 STRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWIT--DLAIPIVTGFLGKAWRTCAITTL 282 (559)
Q Consensus 205 sa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~--~~~ipVv~Gfig~~~~~G~~~tl 282 (559)
|+..+++.|++.|+..... +++.+ +...+.+.+... ++ ..++.|++|-.|.+.
T Consensus 22 n~~~l~~~l~~~G~~v~~~-----~iv~D-----------d~~~i~~~l~~~-~~~~~~DlVittGG~g~g~-------- 76 (164)
T 2is8_A 22 THLAIREVLAGGPFEVAAY-----ELVPD-----------EPPMIKKVLRLW-ADREGLDLILTNGGTGLAP-------- 76 (164)
T ss_dssp HHHHHHHHHTTSSEEEEEE-----EEECS-----------CHHHHHHHHHHH-HHTSCCSEEEEESCCSSST--------
T ss_pred hHHHHHHHHHHCCCeEeEE-----EEcCC-----------CHHHHHHHHHHH-HhcCCCCEEEEcCCCCCCC--------
Confidence 6677888999999865443 23322 234455666543 33 456888888555441
Q ss_pred cCCcchhHHHHHHHHcC
Q 008621 283 GRGGSDLTATTIGKALG 299 (559)
Q Consensus 283 gRgGSD~tAa~lA~~L~ 299 (559)
-|+|.-.++.+++
T Consensus 77 ----~D~t~ea~~~~~~ 89 (164)
T 2is8_A 77 ----RDRTPEATRELLD 89 (164)
T ss_dssp ----TCCHHHHHHTTCS
T ss_pred ----CCChHHHHHHHhC
Confidence 5888888887654
No 95
>2fts_A Gephyrin; gephyrin, neuroreceptor anchoring, structu protein; 2.41A {Rattus norvegicus} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 2fu3_A 1t3e_A
Probab=27.92 E-value=90 Score=32.56 Aligned_cols=73 Identities=14% Similarity=0.201 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHcCCceEEecccceEEEEecCCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeecC
Q 008621 205 STRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGR 284 (559)
Q Consensus 205 sa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlgR 284 (559)
|+..+++.|++.|+....+ +++.++ ...+.+.+... +++.++.|++|-.+.+ .
T Consensus 209 N~~~L~~~l~~~G~~v~~~-----~iv~Dd-----------~~~i~~~l~~a-~~~~DlVittGG~s~g----~------ 261 (419)
T 2fts_A 209 NRSTLLATIQEHGYPTINL-----GIVGDN-----------PDDLLNALNEG-ISRADVIITSGGVSMG----E------ 261 (419)
T ss_dssp HHHHHHHHHHTTTCCEEEE-----EEECSS-----------HHHHHHHHHHH-HHHCSEEEEESCCSSS----C------
T ss_pred chHHHHHHHHHCCCEEEEE-----eecCCC-----------HHHHHHHHHHH-HhcCCEEEEcCCCcCC----C------
Confidence 6677889999999986543 244332 24455555543 3345677888855433 2
Q ss_pred CcchhHHHHHHHHcCcCcEEEee
Q 008621 285 GGSDLTATTIGKALGLQEIQVWK 307 (559)
Q Consensus 285 gGSD~tAa~lA~~L~A~~l~i~T 307 (559)
-|++...++..++. ++.+|.
T Consensus 262 --~D~t~~al~~~lg~-~~~f~~ 281 (419)
T 2fts_A 262 --KDYLKQVLDIDLHA-QIHFGR 281 (419)
T ss_dssp --CHHHHHHHHTTTCC-EEEESE
T ss_pred --cccHHHHHHHHcCC-ceEEeE
Confidence 69999999888887 466654
No 96
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=26.62 E-value=77 Score=31.36 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=30.7
Q ss_pred eeEEEEEeeccccchHHHHHHHHHHhCCCcEEEEEec
Q 008621 476 RSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQG 512 (559)
Q Consensus 476 ~aiISIVG~~~~~~gv~~ri~~~L~~~~InI~~Isqg 512 (559)
-.+++++|. ..||+++++.+.|+++|+||.-++|.
T Consensus 7 ~~vLtv~c~--Dr~GIVa~Vs~~La~~g~NI~d~~q~ 41 (287)
T 3nrb_A 7 QYVLSLACQ--DAPGIVSEVSTFLFNNGANIVEAEQF 41 (287)
T ss_dssp EEEEEEEEE--CCTTHHHHHHHHHHHTTCEEEEEEEE
T ss_pred eEEEEEECC--CCCCHHHHHHHHHHHCCCCEEeeeee
Confidence 467888884 57899999999999999999999983
No 97
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=26.29 E-value=1.1e+02 Score=27.71 Aligned_cols=67 Identities=24% Similarity=0.253 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHcCCceEEecccceEEEEecCCCCceeeecchHHHHHHHhhchhcC--CcEEEEcCCCcccCCCCceee
Q 008621 204 MSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITD--LAIPIVTGFLGKAWRTCAITT 281 (559)
Q Consensus 204 lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~--~~ipVv~Gfig~~~~~G~~~t 281 (559)
-|+..+++.|++.|+....+ +++-+ +...+.+.+... +++ .++.|++|-.|.+.
T Consensus 40 sn~~~L~~~l~~~G~~v~~~-----~iv~D-----------d~~~I~~al~~a-~~~~~~DlVittGG~s~g~------- 95 (178)
T 2pjk_A 40 ESGDIIKQLLIENGHKIIGY-----SLVPD-----------DKIKILKAFTDA-LSIDEVDVIISTGGTGYSP------- 95 (178)
T ss_dssp HHHHHHHHHHHHTTCEEEEE-----EEECS-----------CHHHHHHHHHHH-HTCTTCCEEEEESCCSSST-------
T ss_pred hHHHHHHHHHHHCCCEEEEE-----EEeCC-----------CHHHHHHHHHHH-HhcCCCCEEEECCCCCCCC-------
Confidence 36677888899999876443 23322 234456666543 344 46888888555431
Q ss_pred ecCCcchhHHHHHHHHcC
Q 008621 282 LGRGGSDLTATTIGKALG 299 (559)
Q Consensus 282 lgRgGSD~tAa~lA~~L~ 299 (559)
-|++.-.++.+++
T Consensus 96 -----~D~t~eal~~~~~ 108 (178)
T 2pjk_A 96 -----TDITVETIRKLFD 108 (178)
T ss_dssp -----TCCHHHHHGGGCS
T ss_pred -----CcchHHHHHHHhc
Confidence 5888888887755
No 98
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=24.97 E-value=2.8e+02 Score=23.81 Aligned_cols=61 Identities=15% Similarity=0.244 Sum_probs=0.0
Q ss_pred EEEEecCccchhhHHHHHHHHHHhCCCcEEEEE-ecCceeEEEeCCCchhhHHHHHHHHHHHHHHHHHhhhcee
Q 008621 398 LDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA-TSEVSLSLTLDPSKLWSRELIQQASELDHVVEELEKIAIV 470 (559)
Q Consensus 398 ItV~~~~m~~~~g~larIf~~L~~~gI~Vd~Is-tSe~sIs~~v~~~~~~~~~~~~~~~~l~~~~~~L~~~~~v 470 (559)
|.|.. .+.+|.+.++++.|+++++++..+. .....+.+.++..+.. .+..+...+..+..+
T Consensus 3 ~~v~~---~dr~g~l~~i~~~l~~~~~ni~~~~~~~~g~i~~~~~~~~~~---------~~~~L~~~l~~i~~~ 64 (190)
T 2jhe_A 3 LEVFC---EDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFE---------SFSSLMAEIRRIAGV 64 (190)
T ss_dssp EEEEE---CSCTTHHHHHHHHHHHTTCCEEEEEEETTTEEEEEECCCCHH---------HHHHHHHHHHHSTTE
T ss_pred EEEEE---ecCCcHHHHHHHHHHHcCCCeEEEEEecCCEEEEEEEeCCHH---------HHHHHHHHHHcCCCe
No 99
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=24.85 E-value=1.1e+02 Score=28.20 Aligned_cols=68 Identities=15% Similarity=0.145 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHcCCceEEecccceEEEEecCCCCceeeecchHHHHHHHhhchhcCCcEEEEcCCCcccCCCCceeeec
Q 008621 204 MSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLG 283 (559)
Q Consensus 204 lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~~~~ipVv~Gfig~~~~~G~~~tlg 283 (559)
-|...+++.|++.|+....+. ++-+ +...+.+.+...+.++.++.|++|-.|.+.
T Consensus 49 sn~~~L~~~L~~~G~~v~~~~-----iv~D-----------d~~~I~~al~~a~~~~~DlVIttGGts~g~--------- 103 (185)
T 3rfq_A 49 HSGPLVTELLTEAGFVVDGVV-----AVEA-----------DEVDIRNALNTAVIGGVDLVVSVGGTGVTP--------- 103 (185)
T ss_dssp SHHHHHHHHHHHTTEEEEEEE-----EECS-----------CHHHHHHHHHHHHHTTCSEEEEESCCSSST---------
T ss_pred cHHHHHHHHHHHCCCEEEEEE-----EeCC-----------CHHHHHHHHHHHHhCCCCEEEECCCCCCCC---------
Confidence 377888899999998765432 3322 234455556543224557888888555431
Q ss_pred CCcchhHHHHHHHHcC
Q 008621 284 RGGSDLTATTIGKALG 299 (559)
Q Consensus 284 RgGSD~tAa~lA~~L~ 299 (559)
-|+|.-.++..++
T Consensus 104 ---~D~t~eal~~l~~ 116 (185)
T 3rfq_A 104 ---RDVTPESTREILD 116 (185)
T ss_dssp ---TCCHHHHHHTTCS
T ss_pred ---cccHHHHHHHHhc
Confidence 5888888887765
No 100
>1hwu_A PII protein; herbaspirillum seropedicae PII, beta-alpha-beta motif, signal transduction protein, signaling protein; 2.10A {Herbaspirillum seropedicae} SCOP: d.58.5.1
Probab=24.60 E-value=2.9e+02 Score=22.65 Aligned_cols=72 Identities=24% Similarity=0.336 Sum_probs=41.2
Q ss_pred HHHHHHHHhhhceeecccceeEEEEEeeccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHH
Q 008621 457 LDHVVEELEKIAIVNLLQHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHE 536 (559)
Q Consensus 457 l~~~~~~L~~~~~v~~~~~~aiISIVG~~~~~~gv~~ri~~~L~~~~InI~~IsqgaSe~sIs~vV~~~d~~kAv~~LH~ 536 (559)
++.+.+.|.... ...+++..+-|...+... ...+.-. ...+.++ .+..+.+++++++.+++++++.+
T Consensus 13 ~~~v~~aL~~~G----~~g~Tv~~v~G~G~~~~~--~~~~~g~---~~~~~~~----~k~~ieivv~d~~v~~vv~~I~~ 79 (112)
T 1hwu_A 13 LDEVRESLAEVG----VTGLTVTEVKGFGRQKGH--TELYRGA---EYVVDFL----PKVKIEVVVDDKVVEQAVDAIIK 79 (112)
T ss_dssp HHHHHHHHHHTT----CCCCEEEEEEEEC------------------CCCCEE----EEEEEEEEECGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHCC----CCeEEEEeeEeEcCccCC--ccccccc---ccccccc----ceEEEEEEEcHHHHHHHHHHHHH
Confidence 445555665532 245677888887543221 1111111 1222232 46779999999999999999999
Q ss_pred HhccC
Q 008621 537 TFFES 541 (559)
Q Consensus 537 ~f~~~ 541 (559)
.....
T Consensus 80 ~~~tg 84 (112)
T 1hwu_A 80 AARTG 84 (112)
T ss_dssp HHCCS
T ss_pred HhcCC
Confidence 88653
No 101
>3m05_A Uncharacterized protein PEPE_1480; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 3.15A {Pediococcus pentosaceus}
Probab=22.88 E-value=2.2e+02 Score=24.11 Aligned_cols=27 Identities=0% Similarity=0.171 Sum_probs=22.9
Q ss_pred ceEEEEEEecccHHHHHHHHHHHhccC
Q 008621 515 KVNISLIVNDDEAEQCVRALHETFFES 541 (559)
Q Consensus 515 e~sIs~vV~~~d~~kAv~~LH~~f~~~ 541 (559)
...+.++|++++.+++++.+.+.-...
T Consensus 46 ~~~leivV~De~Vd~vi~~I~~~a~TR 72 (114)
T 3m05_A 46 NTTFMIGIEEERVPEVLEIIKKASHTR 72 (114)
T ss_dssp EEEEEEEEEGGGHHHHHHHHHHHHCCE
T ss_pred CEEEEEEEcHHHHHHHHHHHHHHcCCc
Confidence 356899999999999999999986644
No 102
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=22.57 E-value=95 Score=27.77 Aligned_cols=66 Identities=11% Similarity=0.107 Sum_probs=38.4
Q ss_pred HHHHHHHH----HHHcCCceEEecccceEEEEecCCCCceeeecchHHHHHHHhhchhc-CCcEEEEcCCCcccCCCCce
Q 008621 205 STRIFAAY----LNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWIT-DLAIPIVTGFLGKAWRTCAI 279 (559)
Q Consensus 205 sa~ll~~~----L~~~Gi~a~~l~~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~~-~~~ipVv~Gfig~~~~~G~~ 279 (559)
|+..+++. |++.|+....+ +++-+ +.+.+.+.+... ++ ..++.|++|-.|.+.
T Consensus 26 n~~~l~~~~~~~l~~~G~~v~~~-----~iv~D-----------d~~~I~~~l~~a-~~~~~DlVittGG~g~~~----- 83 (167)
T 2g2c_A 26 ALPLLQRLMSDELQDYSYELISE-----VVVPE-----------GYDTVVEAIATA-LKQGARFIITAGGTGIRA----- 83 (167)
T ss_dssp HHHHHHHHHCC----CEEEEEEE-----EEECS-----------SHHHHHHHHHHH-HHTTCSEEEEESCCSSST-----
T ss_pred HHHHHHHhHHhHHHHCCCEEeEE-----EEeCC-----------CHHHHHHHHHHH-HhCCCCEEEECCCCCCCC-----
Confidence 66677888 88888765432 23322 234456666543 33 356888888665442
Q ss_pred eeecCCcchhHHHHHHHHcC
Q 008621 280 TTLGRGGSDLTATTIGKALG 299 (559)
Q Consensus 280 ~tlgRgGSD~tAa~lA~~L~ 299 (559)
-|+|.-.++.+++
T Consensus 84 -------~D~t~ea~~~~~~ 96 (167)
T 2g2c_A 84 -------KNQTPEATASFIH 96 (167)
T ss_dssp -------TCCHHHHHHTTCS
T ss_pred -------CcChHHHHHHHhC
Confidence 5888888887654
No 103
>3ewi_A N-acylneuraminate cytidylyltransferase; beta barrel, HAD-like, rossmannoid fold, nucleotidyltransferase, nucleus; 1.90A {Mus musculus}
Probab=22.36 E-value=92 Score=27.82 Aligned_cols=50 Identities=18% Similarity=0.193 Sum_probs=34.2
Q ss_pred EEeeCCcccccCCCCCC-CCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCC
Q 008621 304 QVWKDVDGVLTCDPNIH-PHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSY 366 (559)
Q Consensus 304 ~i~TDV~GV~taDP~~v-~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~ 366 (559)
.+.+|+||+++..-..+ ++.+.+...+..+.. +++.+++.|+++.|.++.
T Consensus 11 liv~D~DGtL~d~~~~~~~~g~~~~~f~~~D~~-------------~L~~Lk~~Gi~~~I~Tg~ 61 (168)
T 3ewi_A 11 LLVCNIDGCLTNGHIYVSGDQKEIISYDVKDAI-------------GISLLKKSGIEVRLISER 61 (168)
T ss_dssp EEEEECCCCCSCSCCBCCSSCCCEEEEEHHHHH-------------HHHHHHHTTCEEEEECSS
T ss_pred EEEEeCccceECCcEEEcCCCCEEEEEecCcHH-------------HHHHHHHCCCEEEEEeCc
Confidence 58899999998653322 334455555544432 688889999999888754
No 104
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=22.24 E-value=5.5e+02 Score=25.00 Aligned_cols=34 Identities=12% Similarity=-0.048 Sum_probs=29.1
Q ss_pred EEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEec
Q 008621 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS 432 (559)
Q Consensus 396 alItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstS 432 (559)
..+++.+. +++|+.+++.+.|+++|+||.-+++.
T Consensus 9 ~vLtv~c~---DrpGIVa~Vs~~La~~g~NI~d~~q~ 42 (286)
T 3n0v_A 9 WILTADCP---SMLGTVDVVTRYLFEQRCYVTEHHSF 42 (286)
T ss_dssp EEEEEEEE---CCTTHHHHHHHHHHHTTCEEEEEEEE
T ss_pred EEEEEEeC---CCCCHHHHHHHHHHHCCCCeeeeeee
Confidence 56788874 68999999999999999999988754
No 105
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=21.62 E-value=1.5e+02 Score=26.46 Aligned_cols=66 Identities=26% Similarity=0.289 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHcCCceEEecccceEEEEecCCCCceeeecchHHHHHHHhhchh-cCCcEEEEcCCCcccCCCCceeeec
Q 008621 205 STRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWI-TDLAIPIVTGFLGKAWRTCAITTLG 283 (559)
Q Consensus 205 sa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a~i~~~~~~~i~~~l~~~l~-~~~~ipVv~Gfig~~~~~G~~~tlg 283 (559)
|...+++.|++.|++..... ++-|+ ...+.+.+...+. +..++.|++|-.|.+.
T Consensus 41 ng~~L~~~L~~~G~~v~~~~-----iV~Dd-----------~~~i~~al~~~~a~~~~DlVittGG~g~~~--------- 95 (178)
T 3iwt_A 41 SGDIIKQLLIENGHKIIGYS-----LVPDD-----------KIKILKAFTDALSIDEVDVIISTGGTGYSP--------- 95 (178)
T ss_dssp HHHHHHHHHHHTTCEEEEEE-----EECSC-----------HHHHHHHHHHHHTCTTCCEEEEESCCSSST---------
T ss_pred hHHHHHHHHHHCCCEEEEEE-----EeCCC-----------HHHHHHHHHHHHhcCCCCEEEecCCcccCC---------
Confidence 66778889999999865432 33322 2344444443221 2346888888666542
Q ss_pred CCcchhHHHHHHHHc
Q 008621 284 RGGSDLTATTIGKAL 298 (559)
Q Consensus 284 RgGSD~tAa~lA~~L 298 (559)
-|+|.-.++..+
T Consensus 96 ---~D~t~ea~~~~~ 107 (178)
T 3iwt_A 96 ---TDITVETIRKLF 107 (178)
T ss_dssp ---TCCHHHHHGGGC
T ss_pred ---CCchHHHHHHhh
Confidence 477776666554
No 106
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=20.87 E-value=5.6e+02 Score=27.17 Aligned_cols=117 Identities=14% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHhCCCCEEEec-CCCCCCCCeEEecCC--CCccceeeEEeeec--CeEEEEEEecCc-------------cchhh
Q 008621 349 SMRPAREGDIPVRVKN-SYNPNAPGTLIRRSR--DMSKAVLTSIVLKR--NVTMLDIVSTRM-------------LGQYG 410 (559)
Q Consensus 349 a~~~a~~~~Ipv~I~n-~~~p~~~GT~I~~~~--~~~~~~It~Is~~~--~ialItV~~~~m-------------~~~~g 410 (559)
+...+.+.|+.+.... ...+..+.|.-..-. +.....|.|.+.-. ++-++.|.+..+ .+.||
T Consensus 387 A~~iA~e~Gi~i~~~~~~~~~~~~n~v~v~~~~~~~~~~~v~Gt~~gg~g~~~i~~i~g~~v~~~~~~~~l~v~~~D~PG 466 (529)
T 1ygy_A 387 APALAAERGVTAEICKASESPNHRSVVDVRAVGADGSVVTVSGTLYGPQLSQKIVQINGRHFDLRAQGINLIIHYVDRPG 466 (529)
T ss_dssp HHHHHHHHSCEEEEEEESCCSSSSEEEEEEEECTTSCEEEEEEEEETTTTEEEEEEETTEEEEEESCSEEEEEEESCCTT
T ss_pred HHHHHHHcCCEEEEEEccCCCCCCCEEEEEEEECCCCEEEEEEEEeCCCCcEEEEEECCEEEEecCCccEEEEEcCCCCc
Q ss_pred HHHHHHHHHHhCCCcEEEEE------ecCceeEEEeCCCchhhHHHHHHHHHHHHHHHHHhhhceeeccc
Q 008621 411 FLAKVFSTFEDLGISVDVVA------TSEVSLSLTLDPSKLWSRELIQQASELDHVVEELEKIAIVNLLQ 474 (559)
Q Consensus 411 ~larIf~~L~~~gI~Vd~Is------tSe~sIs~~v~~~~~~~~~~~~~~~~l~~~~~~L~~~~~v~~~~ 474 (559)
.++++.+.|.++||||-.+. ..+--..+.+++.. ..++-.-++++..+..+.+.+
T Consensus 467 ~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd~~~---------~~~~l~~l~~~~~i~~v~~v~ 527 (529)
T 1ygy_A 467 ALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQDV---------PDDVRTAIAAAVDAYKLEVVD 527 (529)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESSCC---------CHHHHHHHHHHHTEEEEEEEE
T ss_pred hHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEECCCC---------CHHHHHHHhcCCCccEEEEEe
No 107
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=20.28 E-value=3.8e+02 Score=26.70 Aligned_cols=111 Identities=15% Similarity=0.131 Sum_probs=66.8
Q ss_pred CCCccccccCHHHHHHHHHcCC----CcchHhHHHHHHhCC-CCEEEecCCCCCCCCeEEe---cCCCCccceeeEEeee
Q 008621 321 PHAKPVPYLTFDEAAELAYFGA----QVLHPQSMRPAREGD-IPVRVKNSYNPNAPGTLIR---RSRDMSKAVLTSIVLK 392 (559)
Q Consensus 321 ~~a~~i~~ls~~Ea~eLa~~Ga----~vlhp~a~~~a~~~~-Ipv~I~n~~~p~~~GT~I~---~~~~~~~~~It~Is~~ 392 (559)
|+++.++.-|-.+|.+++..+. -.+-++ .-|..+| .+|.-.|-.|-..--|++. +....... + .
T Consensus 127 p~~~~v~~~STA~AA~~va~~~~~~~AAIas~--~AA~~Yg~L~il~~~I~D~~~N~TRFlvl~~~~~~~~~--~----~ 198 (313)
T 3mwb_A 127 PNADYVPGSSTAASAMGLLEDDAPYEAAICAP--LIAAEQPGLNVLAEDIGDNPDAVTRFILVSRPGALPER--T----G 198 (313)
T ss_dssp TTCEEEECSCHHHHHHHTTSTTCSCSEEEECH--HHHHHCTTCEEEESCCCSCTTCEEEEEEEECSCCCCCC--C----S
T ss_pred CCCEEEEcCcHHHHHHHHHhCCCCCccccCcH--HHHHHcCChhhhhhcccCCCcceeEEEEEecCCCCCCC--C----C
Confidence 5678888889999988876533 122222 2345688 9998888777555667653 22110000 0 0
Q ss_pred cCeEEEEEEecCccchhhHHHHHHHHHHhCCCcEEEEEec-----CceeEEEeC
Q 008621 393 RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS-----EVSLSLTLD 441 (559)
Q Consensus 393 ~~ialItV~~~~m~~~~g~larIf~~L~~~gI~Vd~IstS-----e~sIs~~v~ 441 (559)
.+-+-|-+.-. .+.||-|.++++.|+.+|||.--|-+- .-.-.|.||
T Consensus 199 ~~kTSl~f~~~--~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD 250 (313)
T 3mwb_A 199 ADKTTVVVPLP--EDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSID 250 (313)
T ss_dssp SEEEEEEEECS--SCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEE
T ss_pred CCeEEEEEEeC--CCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEE
Confidence 12222223210 257999999999999999998887532 123456664
Done!