Query 008622
Match_columns 559
No_of_seqs 348 out of 1972
Neff 6.8
Searched_HMMs 46136
Date Thu Mar 28 14:29:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008622.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008622hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4629 Predicted mechanosensi 100.0 1.7E-95 4E-100 803.1 29.2 540 4-555 148-704 (714)
2 PRK10334 mechanosensitive chan 100.0 2.9E-38 6.3E-43 323.0 32.2 221 326-557 62-283 (286)
3 PRK10929 putative mechanosensi 100.0 2.4E-34 5.2E-39 333.6 32.4 223 324-555 866-1089(1109)
4 PRK11281 hypothetical protein; 100.0 9.8E-34 2.1E-38 329.7 31.9 220 327-555 872-1092(1113)
5 PF00924 MS_channel: Mechanose 100.0 1.6E-33 3.6E-38 274.7 21.9 204 334-542 1-206 (206)
6 COG3264 Small-conductance mech 100.0 1.7E-32 3.8E-37 303.6 25.0 261 264-553 551-812 (835)
7 PRK11465 putative mechanosensi 100.0 3.6E-31 7.9E-36 295.7 31.7 215 326-551 506-724 (741)
8 COG0668 MscS Small-conductance 100.0 1.1E-29 2.4E-34 262.5 32.3 216 328-554 82-300 (316)
9 PF00036 EF-hand_1: EF hand; 93.1 0.13 2.9E-06 34.3 3.4 27 284-311 2-28 (29)
10 KOG0044 Ca2+ sensor (EF-Hand s 92.7 0.2 4.4E-06 48.8 5.5 89 246-337 59-153 (193)
11 cd00052 EH Eps15 homology doma 92.1 0.33 7.2E-06 37.7 5.2 58 254-313 2-63 (67)
12 COG5126 FRQ1 Ca2+-binding prot 91.7 0.37 8E-06 45.5 5.7 60 250-312 55-121 (160)
13 PF13833 EF-hand_8: EF-hand do 91.6 0.51 1.1E-05 35.5 5.5 43 267-310 3-52 (54)
14 cd05026 S-100Z S-100Z: S-100Z 91.4 0.67 1.5E-05 39.5 6.7 65 247-312 6-82 (93)
15 cd05023 S-100A11 S-100A11: S-1 90.9 0.58 1.3E-05 39.7 5.7 64 248-313 6-82 (89)
16 PF13499 EF-hand_7: EF-hand do 90.7 0.71 1.5E-05 36.1 5.8 53 254-308 3-65 (66)
17 cd05025 S-100A1 S-100A1: S-100 90.3 0.84 1.8E-05 38.6 6.2 64 247-312 5-81 (92)
18 smart00027 EH Eps15 homology d 90.2 1.1 2.4E-05 38.2 6.9 62 251-314 10-75 (96)
19 cd05029 S-100A6 S-100A6: S-100 89.5 0.82 1.8E-05 38.7 5.4 61 251-312 10-80 (88)
20 KOG0027 Calmodulin and related 88.0 1.3 2.7E-05 41.1 6.1 60 253-314 46-116 (151)
21 cd05022 S-100A13 S-100A13: S-1 87.6 2.2 4.8E-05 36.2 6.9 67 247-314 4-78 (89)
22 cd00213 S-100 S-100: S-100 dom 87.0 1.9 4.1E-05 35.9 6.1 65 248-313 5-81 (88)
23 cd00051 EFh EF-hand, calcium b 85.4 2.1 4.5E-05 31.5 5.2 53 254-308 3-61 (63)
24 cd05030 calgranulins Calgranul 85.2 2 4.4E-05 36.2 5.4 63 248-312 5-80 (88)
25 PRK12309 transaldolase/EF-hand 84.5 1.7 3.7E-05 46.9 5.8 63 243-314 326-388 (391)
26 cd05031 S-100A10_like S-100A10 84.3 3.3 7.2E-05 35.1 6.4 64 247-311 4-79 (94)
27 PF13405 EF-hand_6: EF-hand do 82.8 1.8 3.9E-05 28.8 3.3 26 284-310 2-27 (31)
28 PTZ00184 calmodulin; Provision 82.4 3.1 6.8E-05 37.2 5.9 57 251-309 84-146 (149)
29 PLN02964 phosphatidylserine de 82.2 2.9 6.2E-05 48.0 6.6 59 251-311 179-243 (644)
30 KOG0034 Ca2+/calmodulin-depend 82.0 2.3 4.9E-05 41.3 5.0 62 251-314 66-135 (187)
31 cd05027 S-100B S-100B: S-100B 80.9 4.4 9.4E-05 34.3 5.8 63 248-312 5-80 (88)
32 PTZ00183 centrin; Provisional 80.9 2.9 6.2E-05 38.1 5.1 58 251-310 90-153 (158)
33 PTZ00184 calmodulin; Provision 80.6 3.3 7.1E-05 37.1 5.3 60 251-312 47-113 (149)
34 PF13202 EF-hand_5: EF hand; P 80.5 2.1 4.6E-05 27.4 2.8 23 285-308 2-24 (25)
35 KOG0028 Ca2+-binding protein ( 77.8 3.5 7.7E-05 38.8 4.5 56 256-313 74-136 (172)
36 cd00252 SPARC_EC SPARC_EC; ext 77.1 7 0.00015 34.9 6.1 60 248-309 45-106 (116)
37 PTZ00183 centrin; Provisional 76.3 5.5 0.00012 36.2 5.5 59 252-312 54-119 (158)
38 smart00739 KOW KOW (Kyprides, 68.7 8.3 0.00018 24.6 3.5 21 394-414 1-26 (28)
39 PF13499 EF-hand_7: EF-hand do 63.0 9.4 0.0002 29.6 3.4 30 284-314 2-31 (66)
40 COG5126 FRQ1 Ca2+-binding prot 62.2 13 0.00027 35.3 4.6 55 254-310 95-155 (160)
41 smart00054 EFh EF-hand, calciu 60.5 9.8 0.00021 22.9 2.6 26 284-310 2-27 (29)
42 PF09279 EF-hand_like: Phospho 59.8 20 0.00043 29.4 5.0 54 254-309 3-67 (83)
43 KOG0027 Calmodulin and related 59.1 16 0.00034 33.7 4.7 65 251-317 8-78 (151)
44 PRK05585 yajC preprotein trans 57.3 25 0.00054 30.9 5.4 39 393-431 51-90 (106)
45 KOG0034 Ca2+/calmodulin-depend 54.3 28 0.0006 33.9 5.6 64 245-312 28-96 (187)
46 PF12763 EF-hand_4: Cytoskelet 53.7 40 0.00087 29.5 6.1 58 253-313 12-73 (104)
47 TIGR00739 yajC preprotein tran 49.0 55 0.0012 27.5 5.9 38 393-430 36-74 (84)
48 cd04466 S1_YloQ_GTPase S1_YloQ 48.1 25 0.00055 27.4 3.7 29 393-421 36-67 (68)
49 PF09926 DUF2158: Uncharacteri 47.3 19 0.00041 27.7 2.6 20 395-414 1-22 (53)
50 COG5346 Predicted membrane pro 47.0 1.8E+02 0.0038 26.4 8.9 17 361-377 113-129 (136)
51 PF14801 GCD14_N: tRNA methylt 46.8 11 0.00023 29.1 1.1 19 392-410 3-21 (54)
52 PF08566 Pam17: Mitochondrial 46.7 1.3E+02 0.0028 28.9 8.6 31 352-382 71-101 (173)
53 cd05026 S-100Z S-100Z: S-100Z 44.6 27 0.00058 29.6 3.5 29 284-312 12-41 (93)
54 smart00027 EH Eps15 homology d 44.6 30 0.00065 29.2 3.8 27 284-311 12-38 (96)
55 PF00467 KOW: KOW motif; Inte 43.4 42 0.00091 22.6 3.6 18 397-414 1-23 (32)
56 cd05025 S-100A1 S-100A1: S-100 42.0 35 0.00075 28.6 3.8 28 283-311 10-39 (92)
57 PF09953 DUF2187: Uncharacteri 41.3 34 0.00074 26.7 3.2 20 395-414 4-24 (57)
58 COG4873 Uncharacterized protei 39.9 26 0.00057 28.0 2.4 43 372-418 5-48 (81)
59 KOG0377 Protein serine/threoni 37.8 74 0.0016 34.8 6.1 26 284-310 549-574 (631)
60 cd00052 EH Eps15 homology doma 37.6 33 0.00072 26.1 2.8 26 285-311 2-27 (67)
61 PF08726 EFhand_Ca_insen: Ca2+ 37.2 32 0.00069 27.9 2.6 33 255-290 10-42 (69)
62 cd05022 S-100A13 S-100A13: S-1 36.2 42 0.00091 28.4 3.4 27 284-311 10-37 (89)
63 cd05031 S-100A10_like S-100A10 35.1 58 0.0013 27.4 4.1 27 284-311 10-38 (94)
64 PRK05886 yajC preprotein trans 34.3 1.2E+02 0.0025 27.0 5.9 38 393-430 37-75 (109)
65 PRK12281 rplX 50S ribosomal pr 33.7 53 0.0012 27.1 3.5 22 394-415 6-32 (76)
66 PF06107 DUF951: Bacterial pro 33.2 1.3E+02 0.0028 23.6 5.2 41 395-435 2-48 (57)
67 PRK13889 conjugal transfer rel 32.6 59 0.0013 39.6 5.0 43 393-435 599-651 (988)
68 COG2139 RPL21A Ribosomal prote 32.5 64 0.0014 27.9 3.8 35 392-426 30-79 (98)
69 PRK00004 rplX 50S ribosomal pr 32.1 89 0.0019 27.4 4.8 23 393-415 3-30 (105)
70 TIGR02768 TraA_Ti Ti-type conj 31.5 73 0.0016 37.6 5.4 43 393-435 606-658 (744)
71 cd00213 S-100 S-100: S-100 dom 31.4 57 0.0012 26.8 3.4 28 283-311 9-38 (88)
72 PF02559 CarD_CdnL_TRCF: CarD- 31.4 1.4E+02 0.0031 25.2 6.0 43 395-437 2-53 (98)
73 CHL00141 rpl24 ribosomal prote 30.3 65 0.0014 27.1 3.5 22 394-415 8-34 (83)
74 cd05024 S-100A10 S-100A10: A s 30.2 2E+02 0.0044 24.6 6.5 61 249-312 6-77 (91)
75 COG5117 NOC3 Protein involved 29.9 8.2E+02 0.018 27.3 12.5 131 255-396 313-460 (657)
76 cd04461 S1_Rrp5_repeat_hs8_sc7 29.0 1.6E+02 0.0035 23.9 5.8 45 395-444 12-56 (83)
77 PRK08559 nusG transcription an 28.6 1.6E+02 0.0035 27.4 6.3 43 393-435 93-145 (153)
78 PF03526 Microcin: Colicin E1 27.8 83 0.0018 24.2 3.3 35 128-162 8-42 (55)
79 PRK11465 putative mechanosensi 27.7 2.6E+02 0.0056 33.1 8.9 60 81-145 427-486 (741)
80 PF14023 DUF4239: Protein of u 27.7 5.6E+02 0.012 24.7 11.4 7 390-396 189-195 (209)
81 PF03829 PTSIIA_gutA: PTS syst 27.5 71 0.0015 28.6 3.5 24 391-414 48-71 (117)
82 KOG0031 Myosin regulatory ligh 26.6 90 0.002 29.5 4.0 47 265-312 77-130 (171)
83 PRK05609 nusG transcription an 26.1 1.6E+02 0.0035 27.8 6.0 42 392-433 124-175 (181)
84 PF00575 S1: S1 RNA binding do 26.1 2.1E+02 0.0045 22.4 5.7 57 395-457 2-58 (74)
85 cd05027 S-100B S-100B: S-100B 25.9 76 0.0017 26.6 3.2 27 284-311 10-38 (88)
86 cd01854 YjeQ_engC YjeQ/EngC. 25.8 1E+02 0.0022 31.8 4.8 32 393-424 33-67 (287)
87 PRK06531 yajC preprotein trans 25.3 1.9E+02 0.0042 25.8 5.8 42 394-435 36-79 (113)
88 PF12174 RST: RCD1-SRO-TAF4 (R 25.2 1.5E+02 0.0033 24.0 4.7 51 264-316 4-58 (70)
89 KOG0038 Ca2+-binding kinase in 24.7 58 0.0013 30.4 2.4 59 253-313 73-138 (189)
90 PRK03999 translation initiatio 24.4 2.1E+02 0.0045 26.0 6.0 22 394-415 10-31 (129)
91 PF01157 Ribosomal_L21e: Ribos 23.7 90 0.002 27.2 3.3 23 392-414 30-67 (99)
92 TIGR01080 rplX_A_E ribosomal p 23.7 1.4E+02 0.003 26.7 4.5 35 394-436 41-80 (114)
93 PF14658 EF-hand_9: EF-hand do 23.7 1.9E+02 0.0041 23.3 4.9 54 257-311 4-64 (66)
94 PRK01202 glycine cleavage syst 23.3 2.2E+02 0.0048 25.7 6.0 63 377-442 30-92 (127)
95 PF13856 Gifsy-2: ATP-binding 23.0 1E+02 0.0022 26.2 3.5 20 395-414 66-85 (95)
96 PLN02964 phosphatidylserine de 22.4 1.4E+02 0.0031 34.5 5.5 57 253-312 145-208 (644)
97 COG1862 YajC Preprotein transl 22.4 2.3E+02 0.0051 24.5 5.6 38 394-431 43-81 (97)
98 PRK00409 recombination and DNA 22.3 2.3E+02 0.005 33.7 7.4 44 393-436 635-680 (782)
99 TIGR00405 L26e_arch ribosomal 22.2 2E+02 0.0042 26.3 5.5 43 393-435 85-137 (145)
100 KOG0044 Ca2+ sensor (EF-Hand s 21.8 1.6E+02 0.0034 28.9 4.9 56 253-310 28-91 (193)
101 PRK12288 GTPase RsgA; Reviewed 21.7 2.8E+02 0.0061 29.5 7.3 31 394-424 72-109 (347)
102 PRK10377 PTS system glucitol/s 21.7 1.1E+02 0.0023 27.6 3.5 24 392-415 49-72 (120)
103 PF00677 Lum_binding: Lumazine 21.5 1.6E+02 0.0034 24.6 4.3 22 393-414 32-53 (85)
104 TIGR00849 gutA PTS system, glu 21.0 1.1E+02 0.0025 27.5 3.5 24 392-415 49-72 (121)
105 PRK10692 hypothetical protein; 20.8 1.1E+02 0.0024 25.9 3.1 20 124-143 41-60 (92)
106 PF09204 Colicin_immun: Bacter 20.4 2.7E+02 0.0059 23.7 5.4 45 295-339 12-56 (88)
No 1
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=1.7e-95 Score=803.07 Aligned_cols=540 Identities=40% Similarity=0.724 Sum_probs=508.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcceeccccccceehhhhHHHHHHHHHHHhhhhHHhhhhheeeeeeeecccccceeeeeeec
Q 008622 4 ILIVFELILFVSIIGLLISSLTVNKLKNHAIWDLELWKWCVLALVILCGRVASQWFINIIVFLIEKNFLLKHLVLYFVYG 83 (559)
Q Consensus 4 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~lw~w~~~~~v~~~g~lv~~w~~~~~v~~ie~~f~l~~~vly~v~~ 83 (559)
.+.+++|+.+++++.+++|+++++..++...|++..|+|++.++|.+||++++.|++.+++|++++|+++|++++|||+|
T Consensus 148 ~~~~i~~I~~~~iv~~lv~~l~i~~~~~~~~~~~~~~kw~~~~~v~~~~~lv~~~~~~~vvf~~~~n~~~r~~~l~~v~~ 227 (714)
T KOG4629|consen 148 SITVITWILLVLIVSSLVCSLGIHVHRLVTLWSLILWKWLVTLLVRITAVLVSSWFAALVVFLIESNFLRRKKVLYFVYG 227 (714)
T ss_pred cHHHHHHHHHHHHHHHHHhhhhhheecccceEEEEeeeehhhhHHHHHHHHHHhhHHHHHHHHhhhhHHHHHHHHHHHhh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHH-HHHHHHHHHHcCCCCcccCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhHHHH
Q 008622 84 LRTSISVFIWLT-LVLLVWILLFDHGYGVKRSSRATSKILHHIITRTLACFLAGAALWLVKTFSVKLIGVSFQCKRFFDR 162 (559)
Q Consensus 84 l~~~~~~~~w~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~l~~~~~v~~ia~~fh~~~~~~r 162 (559)
+++.+|.|+|++ +++++|+.+|+.. +++. ...+.|.+ ++++ +|+++.+..|++|++++|++|++||++.|++|
T Consensus 228 ~~~~vq~~~~l~~lv~law~~l~d~~--v~~~--~r~~~l~~-~~~~-i~lli~~~~~lv~ti~~kv~as~f~~s~~~~r 301 (714)
T KOG4629|consen 228 LRKFVQTGIWLGKLVLLAWIFLFDKI--VFRK--TRAKFLAF-VTML-ITLLITEFMWLVKTILMKVIASSFHRSTYFSR 301 (714)
T ss_pred hHHHHHHHHHHhHHHHHHHHHhhhhh--hhhh--hhhhhhhh-hhhh-hhhhHHHHHhhchhhhhHHHHHHHhHHHHHhh
Confidence 999999999999 9999999999987 7664 33447887 9999 99999999999999999999999999999999
Q ss_pred HHhhhhhhHHhhhhcCCcccchhhhhcc--------CccccccccccchhhhhhhcccccchhhHHHHHHHhhcCCcc-c
Q 008622 163 IHDSIFHQHVVQVLSTPKKKMDKKFRNI--------NTAMQFIFTIRDVKKVKRMTEEKISTCSLKALIRFISGSKLS-M 233 (559)
Q Consensus 163 i~~~~~~~~~l~~L~~~~~~~~~~~~~~--------~~~~~~s~~~~~~~~l~~~~~~~~sa~~~~~~~~~v~~~~~~-~ 233 (559)
|||++|+||+|++|++||.+|+ .|+. +...+.....++++++|++++.++|+|+|+++++.++..+.+ +
T Consensus 302 I~e~~f~q~~l~~Lsg~p~~e~--~gr~s~~~~~~s~~~~r~~s~~i~~~~l~~~~~~~~sa~~~~~~~~~~~~~~~t~l 379 (714)
T KOG4629|consen 302 IQESVFTQEVLETLSGPPREED--VGRESTFRAIFSPGLSRSGSAKIGMDKLHKIKKKNVSAWNMRRLMTILAAGGLTTL 379 (714)
T ss_pred cchhhhhHHHHHHhcCCccccc--ccccccceeeccccccchhhcccccchhhhhhHhhhcHhhhhHHHHHHhccCcccC
Confidence 9999999999999999987333 3332 111111112377899999999999999999999999998888 7
Q ss_pred Cccccccc-------CCCChHHHHHHHHHHhcccccCCCccceeHhHHHhhcCChHHHHHHHHHHhhhhccccccHHHHH
Q 008622 234 SNELDDQD-------DIKSVSEAKHLADKIIANIGSDPQSEFIEKDRLLEFLQNERHVKYMLKLFVGAARSGKINKSDFK 306 (559)
Q Consensus 234 ~~~~~~~~-------~i~s~~~a~~lAr~if~~~~~~~g~~~i~~~dl~~~~~~~e~a~~af~lfd~~~~~g~Is~~~~~ 306 (559)
+..++.+. +++|+++|+++|++||+++++ ||..++++||+.+|+++|+ |+.++++|++..+.+ ||++.++
T Consensus 380 ~~~~~~s~~~~~~~~~i~s~~~a~~aA~~iF~nv~~-p~~~~i~ld~~~~f~~~E~-a~~~~slfe~~~~~~-Itrs~~~ 456 (714)
T KOG4629|consen 380 SPGFQLSTSKDSSIIEIRSEKEAKIAARKIFKNVAK-PGVILIDLDDLLRFMGDEE-AERAFSLFEGASDEN-ITRSSFK 456 (714)
T ss_pred CccccccccccchhhhhhhhhhHHHHHHHHHhccCC-CCccchhhhhhhhcCCHHH-HHHHHHhhhhhcccC-ccHHHHH
Confidence 66665543 599999999999999999999 9999999999999999888 999999999985555 9999999
Q ss_pred HHHHHHHHhhHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHhhhhHhHHHHHH
Q 008622 307 KWVIKVYKDRETLKRSLNDAKTAIEELNRILSAIVIVVIIIVWLLVMGLLTYKIIALVTSQLVLLAFMFGNTARTCFEAI 386 (559)
Q Consensus 307 ~~v~~i~~eRk~l~~sl~d~~t~v~~L~~il~~iv~ii~iii~L~ilgi~~~~lla~~g~~~lal~fa~q~tl~n~f~s~ 386 (559)
+|++++|+||++|+++++|+++++++|++++.+++.++++++++..+|++++++++..+++.++++|+|+++++++++|+
T Consensus 457 ~~iv~~~~ERk~L~~tL~d~~taV~kL~~il~~Iv~vv~~~i~lil~~i~~~~~l~~~~sq~v~l~fif~~~~k~~~esi 536 (714)
T KOG4629|consen 457 EWIVNIYRERKALARTLNDTKTAVNKLDRILNFIVAVVLLVIWLILLGINTSKLLLVISSQLVGLAFIFGNIVKELLESI 536 (714)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccceeeeeeecccceeeeeehhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCcCCCCEEEECCeEEEEEEEeeEEEEEEecCCcEEEEeCCcccCCcEEeccCCCCceeEEEEEEEecCCCHHH
Q 008622 387 IFVFVTHPFDVGDRCIIDGVQMVVDEMNILTTIFLRYDNERIYYPNSVLATKPIGNFFRSPPEMGDSVEFAIDVFTSIEI 466 (559)
Q Consensus 387 IfIfv~~PFdVGDrI~I~g~~g~VeeI~Ll~T~f~~~dg~~V~IPNs~L~s~~I~N~sRs~~~~~~~i~~~V~~~t~~ek 466 (559)
||+|+.|||||||||.|||+++.|+||||++|+|.++||+++++|||.|++++|.|++||| .|.+.+++.++..|+++|
T Consensus 537 IFlfv~HPyDvGDRv~VDg~~~vVeemnLlsTvF~~~dg~kI~~PNS~L~~k~I~N~rRS~-~~~~~v~f~i~~~T~~~K 615 (714)
T KOG4629|consen 537 IFLFVMHPYDVGDRVVVDGVNLVVEEMNLLSTVFLRVDGRKIFIPNSVLWTKAISNYRRSP-DMGDEVEFLISSSTPFEK 615 (714)
T ss_pred hheeecCCCCCCCeEEEeceEEEEEEeccceEEEEEECCeEEEeecHHHHhhhhhhhhcCc-cccccEEEEecCCCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCcCCCcEEEEEEEcCCceEEEEEEEEEeccccChhhHHHHHHHHHHHHHHHHHHCCCcccCCc
Q 008622 467 IAELKSRIKHYLERKHKHWSKDHILVVKEIENVNKMEMALYVTHTINFQDYAKKVKRRSKLVLELKKIFEDLGIRYYLLP 546 (559)
Q Consensus 467 I~~lk~~i~~~v~~~p~~~~p~~~v~v~~i~d~~~l~l~v~v~~~~n~q~~~~~~~~rs~l~~~I~~~l~e~gI~~~~P~ 546 (559)
++.+|++|.+|++++|++|.|++.+.+.+++|.|++.+.++++|++||||..+++.||.++++++.+.++|+||+|.++|
T Consensus 616 i~~Lk~rI~~ylks~~~~~~p~~~~~i~~~e~~n~v~i~v~~~h~~n~Qd~~~~~~Rr~~~~~~l~~~~~eLdI~y~l~p 695 (714)
T KOG4629|consen 616 IERLKERIAEYLKSSPDDYYPDLMVVIEEIEDLNSVKICVVVQHKINFQDMKERWSRRTEFVSALTKIMRELDIEYTLYP 695 (714)
T ss_pred HHHHHHHHHHHHhcCccccccchhhHHHhhhhcCcceEEEEEEeecchhhHHHHHhhHHHHHHHHHHHHHHcCcceeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCC
Q 008622 547 QEVRIRYTG 555 (559)
Q Consensus 547 ~~V~l~~~~ 555 (559)
+++++.+.+
T Consensus 696 ~~in~~~~~ 704 (714)
T KOG4629|consen 696 LDINLKNLP 704 (714)
T ss_pred cchhhhcCC
Confidence 999999876
No 2
>PRK10334 mechanosensitive channel MscS; Provisional
Probab=100.00 E-value=2.9e-38 Score=322.95 Aligned_cols=221 Identities=16% Similarity=0.235 Sum_probs=199.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHhhcCCcCCCCEEEECC
Q 008622 326 AKTAIEELNRILSAIVIVVIIIVWLLVMGLLTYKIIALVTSQLVLLAFMFGNTARTCFEAIIFVFVTHPFDVGDRCIIDG 405 (559)
Q Consensus 326 ~~t~v~~L~~il~~iv~ii~iii~L~ilgi~~~~lla~~g~~~lal~fa~q~tl~n~f~s~IfIfv~~PFdVGDrI~I~g 405 (559)
..+..+.+.++++++++++++++++..+|++++++++++|++|+++||++|++++|+++| ++++++|||++||+|+++|
T Consensus 62 ~~~~~~~~~~~~~~~i~~~~~~~~l~~lGi~~~~l~a~~G~~glaiG~a~q~~l~N~~sG-i~i~~~rpf~vGD~I~i~~ 140 (286)
T PRK10334 62 DATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLAVGLALQGSLSNLAAG-VLLVMFRPFRAGEYVDLGG 140 (286)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCCCCEEEECC
Confidence 357788999999999999999999999999999999999999999999999999996655 5799999999999999999
Q ss_pred eEEEEEEEeeEEEEEEecCCcEEEEeCCcccCCcEEeccCCCCceeEEEEEEEecCCCHHHHHHHHHHHHHHHhhccCCc
Q 008622 406 VQMVVDEMNILTTIFLRYDNERIYYPNSVLATKPIGNFFRSPPEMGDSVEFAIDVFTSIEIIAELKSRIKHYLERKHKHW 485 (559)
Q Consensus 406 ~~g~VeeI~Ll~T~f~~~dg~~V~IPNs~L~s~~I~N~sRs~~~~~~~i~~~V~~~t~~ekI~~lk~~i~~~v~~~p~~~ 485 (559)
..|+|++|++++|++++.||+.++|||+.+.+++|+|+|+.+ .++..+++.++|++|+++ +++.+++.++++|...
T Consensus 141 ~~G~V~~I~~r~T~i~t~d~~~v~IPNs~~~~~~i~N~s~~~-~rr~~~~v~V~y~~d~~~---~~~il~~~~~~~~~vl 216 (286)
T PRK10334 141 VAGTVLSVQIFSTTMRTADGKIIVIPNGKIIAGNIINFSREP-VRRNEFIIGVAYDSDIDQ---VKQILTNIIQSEDRIL 216 (286)
T ss_pred EEEEEEEEEeEEEEEEcCCCCEEEEcchHhcCCeeEEcCCCC-eEEEEEEEEecCCCCHHH---HHHHHHHHHHhCCcee
Confidence 999999999999999999999999999999999999999988 888999999999999555 8889999999999987
Q ss_pred -CCCcEEEEEEEcCCceEEEEEEEEEeccccChhhHHHHHHHHHHHHHHHHHHCCCcccCCceEEEEecCCCC
Q 008622 486 -SKDHILVVKEIENVNKMEMALYVTHTINFQDYAKKVKRRSKLVLELKKIFEDLGIRYYLLPQEVRIRYTGPL 557 (559)
Q Consensus 486 -~p~~~v~v~~i~d~~~l~l~v~v~~~~n~q~~~~~~~~rs~l~~~I~~~l~e~gI~~~~P~~~V~l~~~~~~ 557 (559)
+|.|.+.+.+++|+ ++++.+.++.+ ..++++.+++++.+++++|+++||++|+|++++++.+.++.
T Consensus 217 ~~p~p~v~~~~~~ds-si~~~v~~wv~-----~~~~~~~~~~~~~~I~~~f~~~gI~ip~p~~~v~~~~~~~~ 283 (286)
T PRK10334 217 KDREMTVRLNELGAS-SINFVVRVWSN-----SGDLQNVYWDVLERIKREFDAAGISFPYPQMDVNFKRVKED 283 (286)
T ss_pred cCCCCEEEEEeeeCc-eEEEEEEEEEe-----cchhHHHHHHHHHHHHHHHHHCCCcCCCCCeEEEeccCCcc
Confidence 78899999999998 55555555442 23567889999999999999999999999999999876653
No 3
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=100.00 E-value=2.4e-34 Score=333.60 Aligned_cols=223 Identities=15% Similarity=0.171 Sum_probs=201.4
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHhhcCCcCCCCEEEE
Q 008622 324 NDAKTAIEELNRILSAIVIVVIIIVWLLVMGLLTYKIIALVTSQLVLLAFMFGNTARTCFEAIIFVFVTHPFDVGDRCII 403 (559)
Q Consensus 324 ~d~~t~v~~L~~il~~iv~ii~iii~L~ilgi~~~~lla~~g~~~lal~fa~q~tl~n~f~s~IfIfv~~PFdVGDrI~I 403 (559)
+-.++....+.+++.++++++++++++..+|++.+++.+.+|++|+|+||++|++++|+++| ++|+++|||+|||+|+|
T Consensus 866 ~l~~~~~~~i~~l~~y~I~~ig~l~~L~~lGI~~t~l~al~galGVgIGfAlQ~ilsNfiSG-IiIL~erPfrVGD~I~I 944 (1109)
T PRK10929 866 DLTPGTGYAITTITKYLLMLIGGLVGFSMIGIEWSKLQWLVAALGVGLGFGLQEIFANFISG-LIILFEKPIRIGDTVTI 944 (1109)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCCCCCEEEE
Confidence 33467888999999999999999999999999999999999999999999999999996665 56999999999999999
Q ss_pred CCeEEEEEEEeeEEEEEEecCCcEEEEeCCcccCCcEEeccCCCCceeEEEEEEEecCCCHHHHHHHHHHHHHHHhhccC
Q 008622 404 DGVQMVVDEMNILTTIFLRYDNERIYYPNSVLATKPIGNFFRSPPEMGDSVEFAIDVFTSIEIIAELKSRIKHYLERKHK 483 (559)
Q Consensus 404 ~g~~g~VeeI~Ll~T~f~~~dg~~V~IPNs~L~s~~I~N~sRs~~~~~~~i~~~V~~~t~~ekI~~lk~~i~~~v~~~p~ 483 (559)
+|..|+|++|++++|+++++||+.|+|||+.+.++.|+|||+++..++..+++.|+|++|+ +.+++.+.+.++++|.
T Consensus 945 ~~~~GtV~~I~lRsT~Irt~Dg~~IiIPNs~~it~~IiN~S~~d~~~Rv~i~VgV~Y~sDi---e~v~~iL~eaa~~~~~ 1021 (1109)
T PRK10929 945 RDLTGSVTKINTRATTISDWDRKEIIVPNKAFITEQFINWSLSDSVTRVVLTIPAPADANS---EEVTEILLTAARRCSL 1021 (1109)
T ss_pred CCEEEEEEEEeeeEEEEEeCCCCEEEEEChhhhcCceEecCCCCcceEEEEEEEeCCCCCH---HHHHHHHHHHHHhCcc
Confidence 9999999999999999999999999999999999999999999834688999999999995 4599999999999999
Q ss_pred Cc-CCCcEEEEEEEcCCceEEEEEEEEEeccccChhhHHHHHHHHHHHHHHHHHHCCCcccCCceEEEEecCC
Q 008622 484 HW-SKDHILVVKEIENVNKMEMALYVTHTINFQDYAKKVKRRSKLVLELKKIFEDLGIRYYLLPQEVRIRYTG 555 (559)
Q Consensus 484 ~~-~p~~~v~v~~i~d~~~l~l~v~v~~~~n~q~~~~~~~~rs~l~~~I~~~l~e~gI~~~~P~~~V~l~~~~ 555 (559)
+. +|.|.+.+.+++|+ .+.+.+.++.+ +.++++..++++...|+++|+++||++|+|++++|+++.+
T Consensus 1022 VL~~P~P~V~~~~fgds-si~~elr~wv~----~~~~~~~v~~el~~~I~~~F~~~GIeIPfPq~~v~i~~~~ 1089 (1109)
T PRK10929 1022 VLDNPAPEVFLVDLQQG-IQIFELRIYAA----EMGHRMPLRHEIHQLILAGFREHGIDMPFPPFQMRLESLG 1089 (1109)
T ss_pred ccCCCCCEEEEEecCCC-ceEEEEEEEEc----ChhhHHHHHHHHHHHHHHHHHHCCCcCCCCCeEEEeecCC
Confidence 87 79999999999986 45444444332 5677899999999999999999999999999999998764
No 4
>PRK11281 hypothetical protein; Provisional
Probab=100.00 E-value=9.8e-34 Score=329.71 Aligned_cols=220 Identities=14% Similarity=0.201 Sum_probs=199.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHhhcCCcCCCCEEEECCe
Q 008622 327 KTAIEELNRILSAIVIVVIIIVWLLVMGLLTYKIIALVTSQLVLLAFMFGNTARTCFEAIIFVFVTHPFDVGDRCIIDGV 406 (559)
Q Consensus 327 ~t~v~~L~~il~~iv~ii~iii~L~ilgi~~~~lla~~g~~~lal~fa~q~tl~n~f~s~IfIfv~~PFdVGDrI~I~g~ 406 (559)
++....+.+++.++++++++++++..+|++.+++.+.+|++|+|+||++|++++|+++|+ +|+++|||+|||+|+|||.
T Consensus 872 ~~~~~~i~~li~y~I~~i~iliaL~~lGi~~t~L~~l~gaLgVgIGfglQ~ilsNfISGi-iIl~eRPfrIGD~I~I~~~ 950 (1113)
T PRK11281 872 QGTSYAITTLLTYIIIAVGAVTAFSTLGVSWDKLQWLVAALSVGLGFGLQEIFANFVSGL-IILFERPVRIGDTVTIGTF 950 (1113)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCcCCCCEEEECCE
Confidence 456678899999999999999999999999999999999999999999999999977655 6889999999999999999
Q ss_pred EEEEEEEeeEEEEEEecCCcEEEEeCCcccCCcEEeccCCCCceeEEEEEEEecCCCHHHHHHHHHHHHHHHhhccCCc-
Q 008622 407 QMVVDEMNILTTIFLRYDNERIYYPNSVLATKPIGNFFRSPPEMGDSVEFAIDVFTSIEIIAELKSRIKHYLERKHKHW- 485 (559)
Q Consensus 407 ~g~VeeI~Ll~T~f~~~dg~~V~IPNs~L~s~~I~N~sRs~~~~~~~i~~~V~~~t~~ekI~~lk~~i~~~v~~~p~~~- 485 (559)
.|+|++|++++|+++++||+.|+|||+.+.++.|+|||+++..++..++++|+|++|+++ +++.+.+.++++|.+.
T Consensus 951 ~G~V~~I~lRsT~Irt~D~~~ViIPNs~~~t~~IiN~S~~~~~~Rv~i~vgV~Y~sDi~~---v~~iL~eaa~~~p~Vl~ 1027 (1113)
T PRK11281 951 SGTVSKIRIRATTITDFDRKEVIVPNKAFVTERLINWSLSDTVTRVVIKVGVAYGSDLEK---VRELLLQAATENPRVMK 1027 (1113)
T ss_pred EEEEEEEEeEEEEEEcCCCCEEEEechhhhcCceEeCCCCCcceEEEEEEEeCCCCCHHH---HHHHHHHHHHcCccccc
Confidence 999999999999999999999999999999999999999984578999999999999555 9999999999999987
Q ss_pred CCCcEEEEEEEcCCceEEEEEEEEEeccccChhhHHHHHHHHHHHHHHHHHHCCCcccCCceEEEEecCC
Q 008622 486 SKDHILVVKEIENVNKMEMALYVTHTINFQDYAKKVKRRSKLVLELKKIFEDLGIRYYLLPQEVRIRYTG 555 (559)
Q Consensus 486 ~p~~~v~v~~i~d~~~l~l~v~v~~~~n~q~~~~~~~~rs~l~~~I~~~l~e~gI~~~~P~~~V~l~~~~ 555 (559)
+|.|.+.+.+++|+ .+.+.+.++.. +.++++..++++..+|+++|+++||++|+|+++||+.+.+
T Consensus 1028 ~P~P~V~~~~fgds-si~~~lr~wv~----~~~~~~~v~s~L~~~I~~~f~e~GIeIpfPq~~V~i~~~~ 1092 (1113)
T PRK11281 1028 EPEPQVFFLNFGAS-TLDHELRLYVR----ELGDRSPTVDELNRRIDRLFRENDINIAFNQLDVFLKNQK 1092 (1113)
T ss_pred CCCCEEEEEeccCc-eEEEEEEEEEc----CHhhHHHHHHHHHHHHHHHHHHCCCcCCCCCeeEEecCCC
Confidence 79999999999987 55555544432 5678899999999999999999999999999999998654
No 5
>PF00924 MS_channel: Mechanosensitive ion channel; InterPro: IPR006685 Mechanosensitive (MS) channels provide protection against hypo-osmotic shock, responding both to stretching of the cell membrane and to membrane depolarisation. They are present in the membranes of organisms from the three domains of life: bacteria, archaea, and eukarya []. There are two families of MS channels: large-conductance MS channels (MscL) and small-conductance MS channels (MscS or YGGB). The pressure threshold for MscS opening is 50% that of MscL []. The MscS family is much larger and more variable in size and sequence than the MscL family. Much of the diversity in MscS proteins occurs in the size of the transmembrane regions, which ranges from three to eleven transmembrane helices, although the three C-terminal helices are conserved. This family contains sequences form the MscS family of proteins. MscS folds as a homo-heptamer with a cylindrical shape, and can be divided into transmembrane and extramembrane regions: an N-terminal periplasmic region, a transmembrane region, and a C-terminal cytoplasmic region (middle and C-terminal domains). The transmembrane region forms a channel through the membrane that opens into a chamber enclosed by the extramembrane portion, the latter connecting to the cytoplasm through distinct portals [].; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 2OAU_E 2VV5_F.
Probab=100.00 E-value=1.6e-33 Score=274.74 Aligned_cols=204 Identities=29% Similarity=0.434 Sum_probs=165.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHhhcCCcCCCCEEEECCeEEEEEEE
Q 008622 334 NRILSAIVIVVIIIVWLLVMGLLTYKIIALVTSQLVLLAFMFGNTARTCFEAIIFVFVTHPFDVGDRCIIDGVQMVVDEM 413 (559)
Q Consensus 334 ~~il~~iv~ii~iii~L~ilgi~~~~lla~~g~~~lal~fa~q~tl~n~f~s~IfIfv~~PFdVGDrI~I~g~~g~VeeI 413 (559)
++++.++++++++++++..+|++.+++++++|++++++||++|++++|+++|+ +++++|||++||||+++|..|+|++|
T Consensus 1 ~~i~~~~~~~~~~~~~l~~~g~~~~~l~~~~g~~~~~i~f~~~~~~~n~~~gi-~i~~~~pf~vGD~I~i~~~~G~V~~I 79 (206)
T PF00924_consen 1 NKIIRIVIIIVGILIILSILGIDVSSLLASLGVLGLAIGFAFQDIISNFISGI-IILFERPFKVGDRIEIGGVEGRVEEI 79 (206)
T ss_dssp --HHHHHHHHHHHHHHHHCCT--SCCHHHHHHHHHHHHHHHHCHHHHHHHHHH-HHHCC-SS-TT-EEESSS-EEEEEEE
T ss_pred ChHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhccCCccCCCEEEEEEeehHHHhc
Confidence 36788899999999999999999999999999999999999999999988776 57889999999999999999999999
Q ss_pred eeEEEEEEecCCcEEEEeCCcccCCcEEeccC-CCCceeEEEEEEEecCCCHHHHHHHHHHHHHHHhhccCCc-CCCcEE
Q 008622 414 NILTTIFLRYDNERIYYPNSVLATKPIGNFFR-SPPEMGDSVEFAIDVFTSIEIIAELKSRIKHYLERKHKHW-SKDHIL 491 (559)
Q Consensus 414 ~Ll~T~f~~~dg~~V~IPNs~L~s~~I~N~sR-s~~~~~~~i~~~V~~~t~~ekI~~lk~~i~~~v~~~p~~~-~p~~~v 491 (559)
++++|+++++||+.+++||+.+.+++|.|+|| ++ .++..+++.+++++++++++++.+.+.+.++++|... .+.|.+
T Consensus 80 ~l~~t~l~~~~g~~v~IPNs~l~~~~i~N~s~~~~-~~~~~v~~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 158 (206)
T PF00924_consen 80 GLRSTRLRTWDGEIVIIPNSKLISSPIVNYSRSSP-YRRVVVEIPVDYDTDPEKIEELREKIEEALRSNPYIFKEPEPRV 158 (206)
T ss_dssp -SSEEEEEETTS-EEEEEHHHHHCS-EEETTT-SS-EEEEEEEEEE-TTS----HHHHHHHHHHHHHH-TTC-TTS-EEE
T ss_pred CcceeeeecCCCCEEEEEchheeeEEEEEeeccCC-ceeeeeeeeEecCCCchHHHHHHHHHHHHHhcCchhhcCCCCeE
Confidence 99999999999999999999999999999999 66 9999999999999999999999999999999999887 477889
Q ss_pred EEEEEcCCceEEEEEEEEEeccccChhhHHHHHHHHHHHHHHHHHHCCCcc
Q 008622 492 VVKEIENVNKMEMALYVTHTINFQDYAKKVKRRSKLVLELKKIFEDLGIRY 542 (559)
Q Consensus 492 ~v~~i~d~~~l~l~v~v~~~~n~q~~~~~~~~rs~l~~~I~~~l~e~gI~~ 542 (559)
.+.++++. .+++++++..+. +++.+++..|++++.+++++|+++||++
T Consensus 159 ~~~~~~~~-~~~~~i~~~~~~--~~~~~~~~~~~~i~~~i~~~~~~~gI~~ 206 (206)
T PF00924_consen 159 VVDEIGDS-SLEFRIRVYVKN--QDPEKYWEIRSEIRKRILEILEEHGIEI 206 (206)
T ss_dssp EEEEE-SS-SEEEEEEEEEEC-----CCHHHHHHHHHHHHHHHHHHHT---
T ss_pred EEccccCC-ceEEEEEEEEEe--CchhhHHHHHHHHHHHHHHHHHHccCCC
Confidence 89988876 677777666542 4578899999999999999999999974
No 6
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.7e-32 Score=303.64 Aligned_cols=261 Identities=16% Similarity=0.216 Sum_probs=224.8
Q ss_pred CCccceeHhHHHhhcCChHHHHHHHHHHhhhhccccccHHHHHHHHHHHHHhhHHHHhhccChhHHHHHHHHHHHHHHHH
Q 008622 264 PQSEFIEKDRLLEFLQNERHVKYMLKLFVGAARSGKINKSDFKKWVIKVYKDRETLKRSLNDAKTAIEELNRILSAIVIV 343 (559)
Q Consensus 264 ~g~~~i~~~dl~~~~~~~e~a~~af~lfd~~~~~g~Is~~~~~~~v~~i~~eRk~l~~sl~d~~t~v~~L~~il~~iv~i 343 (559)
-|...|++-++.. |.-.|. .+..-...+.+|.......|-++. ......+.+++.+.+..
T Consensus 551 ~g~~~isl~~ll~-------avl~~~-------~~~~l~r~~~~~L~~~vl~r~~~~------~G~r~~I~t~~~Y~~~~ 610 (835)
T COG3264 551 LGVESITLGALLQ-------AVLLFL-------ITYVLTRNLPGWLEVRVLQRLDLD------AGTRYSITTLLGYLLIA 610 (835)
T ss_pred cceeEeeHHHHHH-------HHHHHH-------HHHHHHHHHHHHHHHHHHHhcccC------cchHHHHHHHHHHHHHH
Confidence 4888899988863 222221 112222335556655555565554 44567889999999999
Q ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHhhcCCcCCCCEEEECCeEEEEEEEeeEEEEEEec
Q 008622 344 VIIIVWLLVMGLLTYKIIALVTSQLVLLAFMFGNTARTCFEAIIFVFVTHPFDVGDRCIIDGVQMVVDEMNILTTIFLRY 423 (559)
Q Consensus 344 i~iii~L~ilgi~~~~lla~~g~~~lal~fa~q~tl~n~f~s~IfIfv~~PFdVGDrI~I~g~~g~VeeI~Ll~T~f~~~ 423 (559)
++.++.++.+|++.+++-..+|++++|+||++|++.+||.+|+| |+++||++|||+|++++.+|+|.+|+.+.|++++.
T Consensus 611 i~~l~~lS~~Gi~lssL~~~~gALsvGiGFGLQ~I~~NFVSGlI-iL~ErpvkvGD~It~g~~~G~V~~I~vRAT~I~~f 689 (835)
T COG3264 611 IGGLVGLSTLGIDLSSLQWLAGALSVGLGFGLQEIVSNFVSGLI-ILFERPVKVGDTVTIGTVSGTVRKISVRATTIRTF 689 (835)
T ss_pred HHHHHHHHHcCcChHHHHHHHHHhhhhhchhHHHHHHHhhhhhh-hheecCcccCCEEEECCceEEEEEEEeeEEEEEeC
Confidence 99999999999999999999999999999999999999776665 88999999999999999999999999999999999
Q ss_pred CCcEEEEeCCcccCCcEEeccCCCCceeEEEEEEEecCCCHHHHHHHHHHHHHHHhhccCCc-CCCcEEEEEEEcCCceE
Q 008622 424 DNERIYYPNSVLATKPIGNFFRSPPEMGDSVEFAIDVFTSIEIIAELKSRIKHYLERKHKHW-SKDHILVVKEIENVNKM 502 (559)
Q Consensus 424 dg~~V~IPNs~L~s~~I~N~sRs~~~~~~~i~~~V~~~t~~ekI~~lk~~i~~~v~~~p~~~-~p~~~v~v~~i~d~~~l 502 (559)
||+.|++||+.+.++.+.|++.++...+..+.+.++|++|+++ +++.+.+..++||++. +|.|.+.+.+++++ .+
T Consensus 690 d~~~vIVPNs~fI~~qV~NWs~~~~~~R~~i~v~vay~sD~~~---V~~~Ll~~A~~~p~Vl~~P~P~v~f~~fg~s-~L 765 (835)
T COG3264 690 DRKEVIVPNSAFITEQVINWSLRDTTTRLVIPVGVAYGSDPEL---VRELLLEAAREHPRVLKDPAPEVFFTAFGAS-SL 765 (835)
T ss_pred CCCeEEeccHHHHhhheeeeeccCceEEEEEEecccCCCCHHH---HHHHHHHHHHhCCCccCCCCCeeEeeccccc-ce
Confidence 9999999999999999999999987888999999999999777 9999999999999998 89999999999987 66
Q ss_pred EEEEEEEEeccccChhhHHHHHHHHHHHHHHHHHHCCCcccCCceEEEEec
Q 008622 503 EMALYVTHTINFQDYAKKVKRRSKLVLELKKIFEDLGIRYYLLPQEVRIRY 553 (559)
Q Consensus 503 ~l~v~v~~~~n~q~~~~~~~~rs~l~~~I~~~l~e~gI~~~~P~~~V~l~~ 553 (559)
++.++++.. +...+...++++...|.+.|+|+||++|+|++++++++
T Consensus 766 ~fELr~~v~----~~~~~~~~~~~l~~~I~~~fre~gI~ipfpq~~v~l~~ 812 (835)
T COG3264 766 DFELRVYVA----ELGDRMPVRSELNRAILDRFRENGIEIPFPQREVRLKN 812 (835)
T ss_pred eEEEEEEee----ccccccchHHHHHHHHHHHHHHcCCCCCCchHheEecC
Confidence 666655543 66667779999999999999999999999999999997
No 7
>PRK11465 putative mechanosensitive channel protein; Provisional
Probab=100.00 E-value=3.6e-31 Score=295.73 Aligned_cols=215 Identities=16% Similarity=0.168 Sum_probs=183.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHhhcCCcCCCCEEEECC
Q 008622 326 AKTAIEELNRILSAIVIVVIIIVWLLVMGLLTYKIIALVTSQLVLLAFMFGNTARTCFEAIIFVFVTHPFDVGDRCIIDG 405 (559)
Q Consensus 326 ~~t~v~~L~~il~~iv~ii~iii~L~ilgi~~~~lla~~g~~~lal~fa~q~tl~n~f~s~IfIfv~~PFdVGDrI~I~g 405 (559)
.+++.+.+.+++.+++++++++++|..+|++++++++++|++|+++||++|++++|+++| +||++++||++||+|+++|
T Consensus 506 ~~Tl~~ll~~~~~~~i~~i~~l~vL~~lGi~it~LlA~aGi~GlaiGfaaQ~~l~N~isG-i~Il~e~pf~vGD~I~v~g 584 (741)
T PRK11465 506 TRTLLTLFRNALAVIISTITIMIVLSEIGVNIAPLLAGAGALGLAISFGSQTLVKDIITG-VFIQFENGMNTGDLVTIGP 584 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCcCCCCEEEECC
Confidence 578999999999999999999999999999999999999999999999999999997765 5799999999999999999
Q ss_pred eEEEEEEEeeEEEEEEecCCcEEEEeCCcccCCcEEeccCCCCceeEEEEEEEecCCCHHHHHHHHHHHHHHHhhccCC-
Q 008622 406 VQMVVDEMNILTTIFLRYDNERIYYPNSVLATKPIGNFFRSPPEMGDSVEFAIDVFTSIEIIAELKSRIKHYLERKHKH- 484 (559)
Q Consensus 406 ~~g~VeeI~Ll~T~f~~~dg~~V~IPNs~L~s~~I~N~sRs~~~~~~~i~~~V~~~t~~ekI~~lk~~i~~~v~~~p~~- 484 (559)
.+|+||+|++++|+++++||+.++||||.+.+ |.|++|.. ++..+++.|+|++|.++..++.+++.+-+.++|..
T Consensus 585 ~~GtVe~I~lRsT~iRt~dg~~i~IPNs~i~~--v~N~Sr~~--~~~~v~v~V~Y~~Didka~~iL~ev~~el~~dpe~~ 660 (741)
T PRK11465 585 LTGTVERMSIRSVGVRQDTGAYHIIPWSSITT--FANFVRGI--GSVVANYDVDRHEDADKANQALKDAVAELMENEEIR 660 (741)
T ss_pred eEEEEEEEeeeEEEEEcCCCCEEEEECCccee--eEEeccCc--eEEEEEEEeCCCCCHHHHHHHHHHHHHHhhcCcccc
Confidence 99999999999999999999999999999975 99999864 47778999999999776444433333333345542
Q ss_pred ---cCCCcEEEEEEEcCCceEEEEEEEEEeccccChhhHHHHHHHHHHHHHHHHHHCCCcccCCceEEEE
Q 008622 485 ---WSKDHILVVKEIENVNKMEMALYVTHTINFQDYAKKVKRRSKLVLELKKIFEDLGIRYYLLPQEVRI 551 (559)
Q Consensus 485 ---~~p~~~v~v~~i~d~~~l~l~v~v~~~~n~q~~~~~~~~rs~l~~~I~~~l~e~gI~~~~P~~~V~l 551 (559)
..+.+.+.+.+++|+ ++.++++++. +++++|..+.+++..+++.|+++||++|+|+.++.-
T Consensus 661 ~~il~~p~~vgV~~lgdS-si~lrvr~~t-----~p~~qw~v~rel~~~IK~~Fde~GIeIP~~tv~v~~ 724 (741)
T PRK11465 661 GLIIGEPNFAGIVGLTNT-AFTLRVSFTT-----LPLKQWTVRFALDSQVKKHFDLAGVRAPVQTYQVLP 724 (741)
T ss_pred ccccCCCCeEEEEEecCc-eEEEEEEEEE-----CcchHHHHHHHHHHHHHHHHHHCCCCCCCCceEeec
Confidence 233345778899887 7888888765 567889999999999999999999998776655443
No 8
>COG0668 MscS Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=1.1e-29 Score=262.52 Aligned_cols=216 Identities=21% Similarity=0.296 Sum_probs=193.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHhhcCCcCCCCEEEEC-Ce
Q 008622 328 TAIEELNRILSAIVIVVIIIVWLLVMGLLTYKIIALVTSQLVLLAFMFGNTARTCFEAIIFVFVTHPFDVGDRCIID-GV 406 (559)
Q Consensus 328 t~v~~L~~il~~iv~ii~iii~L~ilgi~~~~lla~~g~~~lal~fa~q~tl~n~f~s~IfIfv~~PFdVGDrI~I~-g~ 406 (559)
+....+.++..++++++++++++..+|++.+++++++|.+|+++||++|++++|+++|+ |+..+|||++||+|+++ +.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~lla~~G~~glaigla~q~~~~n~~~Gi-~il~~~~f~vGD~I~i~~~~ 160 (316)
T COG0668 82 TLSVFLSNLLRILILVVALLIVLSVLGVQVTSLLAGLGALGLAIGLALQDLLSNLIAGI-FLLLERPFKVGDWIEIGSGV 160 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh-HhheecCcCcCCEEEECCCc
Confidence 33337899999999999999999999999999999999999999999999999977665 67779999999999999 79
Q ss_pred EEEEEEEeeEEEEEEecCCcEEEEeCCcccCCcEEeccCCCCceeEEEEEEEecCCCHHHHHHHHHHHHHHHhhccCCc-
Q 008622 407 QMVVDEMNILTTIFLRYDNERIYYPNSVLATKPIGNFFRSPPEMGDSVEFAIDVFTSIEIIAELKSRIKHYLERKHKHW- 485 (559)
Q Consensus 407 ~g~VeeI~Ll~T~f~~~dg~~V~IPNs~L~s~~I~N~sRs~~~~~~~i~~~V~~~t~~ekI~~lk~~i~~~v~~~p~~~- 485 (559)
.|+|++|++++|++++.||+.+++|||.+.+..|.|++|.+ .++..+++.++|++|+++ +++.+++.++..+.+.
T Consensus 161 ~G~V~~i~~~~T~ir~~dg~~v~iPNs~i~~~~i~N~s~~~-~~~~~~~v~v~~~~~~~~---~~~i~~~~~~~~~~~~~ 236 (316)
T COG0668 161 EGTVEDIGLRSTTIRTLDGRIVTIPNSKLFTANVVNYSREP-GRRVEVKVGVAYDSDLEK---ALKILKEVLEELPEVLK 236 (316)
T ss_pred eEEEEEEEEEEEEEEcCCCCEEEccchhhccCceEeCCCCC-cEEEEEEEeeccCCCHHH---HHHHHHHHHHhcccccc
Confidence 99999999999999999999999999999999999999999 788999999999999666 7777777777777775
Q ss_pred -CCCcEEEEEEEcCCceEEEEEEEEEeccccChhhHHHHHHHHHHHHHHHHHHCCCcccCCceEEEEecC
Q 008622 486 -SKDHILVVKEIENVNKMEMALYVTHTINFQDYAKKVKRRSKLVLELKKIFEDLGIRYYLLPQEVRIRYT 554 (559)
Q Consensus 486 -~p~~~v~v~~i~d~~~l~l~v~v~~~~n~q~~~~~~~~rs~l~~~I~~~l~e~gI~~~~P~~~V~l~~~ 554 (559)
.|.|.+.+.++++. .+.+.++++. +..+.+..++++...++++++++||+.|+|+++++..+.
T Consensus 237 ~~~~~~v~~~~~~~~-~~~i~v~~~t-----~~~~~~~~~~~~~~~i~~~~~~~gi~i~~p~~~~~~~~~ 300 (316)
T COG0668 237 IEPEPVIGVSELGDS-GINIRVRFWT-----NPEDLWSVQRELNLRIKEALEEAGIEIPYPQQSVLLGEL 300 (316)
T ss_pred cCCCcEEEEeeccCC-ceEEEEEEEe-----cchhHHHHHHHHHHHHHHHHHHcCCCCCCCCeeEECcCC
Confidence 78899999999987 6777777665 445589999999999999999999999999999995443
No 9
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=93.11 E-value=0.13 Score=34.25 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=24.1
Q ss_pred HHHHHHHHhhhhccccccHHHHHHHHHH
Q 008622 284 VKYMLKLFVGAARSGKINKSDFKKWVIK 311 (559)
Q Consensus 284 a~~af~lfd~~~~~g~Is~~~~~~~v~~ 311 (559)
++++|..||.+ ++|.|+.+||+..+.+
T Consensus 2 ~~~~F~~~D~d-~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKD-GDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTT-SSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCC-CCCcCCHHHHHHHHHh
Confidence 78999999999 9999999999887653
No 10
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=92.71 E-value=0.2 Score=48.75 Aligned_cols=89 Identities=19% Similarity=0.283 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHhcccccCCCccceeHhHHHhhcC------ChHHHHHHHHHHhhhhccccccHHHHHHHHHHHHHhhHHH
Q 008622 246 VSEAKHLADKIIANIGSDPQSEFIEKDRLLEFLQ------NERHVKYMLKLFVGAARSGKINKSDFKKWVIKVYKDRETL 319 (559)
Q Consensus 246 ~~~a~~lAr~if~~~~~~~g~~~i~~~dl~~~~~------~~e~a~~af~lfd~~~~~g~Is~~~~~~~v~~i~~eRk~l 319 (559)
..++...|+++|..+.. .+..+|+.+++..-+. .+|.+.-+|.++|.+ ++|.|+++||.+.+..+|.--...
T Consensus 59 ~gd~~~y~~~vF~~fD~-~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~d-gdG~It~~Eml~iv~~i~~m~~~~ 136 (193)
T KOG0044|consen 59 DGDASKYAELVFRTFDK-NKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLD-GDGYITKEEMLKIVQAIYQMTGSK 136 (193)
T ss_pred CCCHHHHHHHHHHHhcc-cCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCC-CCceEcHHHHHHHHHHHHHHcccc
Confidence 34678999999999998 8888999988765542 333478889999999 999999999999999998543332
Q ss_pred HhhccChhHHHHHHHHHH
Q 008622 320 KRSLNDAKTAIEELNRIL 337 (559)
Q Consensus 320 ~~sl~d~~t~v~~L~~il 337 (559)
... .+.++.....++++
T Consensus 137 ~~~-~~~~~~~~~v~~if 153 (193)
T KOG0044|consen 137 ALP-EDEETPEERVDKIF 153 (193)
T ss_pred cCC-cccccHHHHHHHHH
Confidence 222 33444444444443
No 11
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=92.13 E-value=0.33 Score=37.72 Aligned_cols=58 Identities=19% Similarity=0.283 Sum_probs=45.6
Q ss_pred HHHhcccccCCCccceeHhHHHhhc---C-ChHHHHHHHHHHhhhhccccccHHHHHHHHHHHH
Q 008622 254 DKIIANIGSDPQSEFIEKDRLLEFL---Q-NERHVKYMLKLFVGAARSGKINKSDFKKWVIKVY 313 (559)
Q Consensus 254 r~if~~~~~~~g~~~i~~~dl~~~~---~-~~e~a~~af~lfd~~~~~g~Is~~~~~~~v~~i~ 313 (559)
+++|..+.. .+...|+.+++.+++ + +++++.+++..+|.+ .+|.|+.+++...+..+.
T Consensus 2 ~~~F~~~D~-~~~G~i~~~el~~~l~~~g~~~~~~~~i~~~~d~~-~~g~i~~~ef~~~~~~~~ 63 (67)
T cd00052 2 DQIFRSLDP-DGDGLISGDEARPFLGKSGLPRSVLAQIWDLADTD-KDGKLDKEEFAIAMHLIA 63 (67)
T ss_pred hHHHHHhCC-CCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHhcCC-CCCcCCHHHHHHHHHHHH
Confidence 457788777 777889999998876 2 334489999999988 899999999987765543
No 12
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=91.68 E-value=0.37 Score=45.50 Aligned_cols=60 Identities=17% Similarity=0.339 Sum_probs=50.0
Q ss_pred HHHHHHHhcccccCCCccceeHhHHHhhcC-------ChHHHHHHHHHHhhhhccccccHHHHHHHHHHH
Q 008622 250 KHLADKIIANIGSDPQSEFIEKDRLLEFLQ-------NERHVKYMLKLFVGAARSGKINKSDFKKWVIKV 312 (559)
Q Consensus 250 ~~lAr~if~~~~~~~g~~~i~~~dl~~~~~-------~~e~a~~af~lfd~~~~~g~Is~~~~~~~v~~i 312 (559)
.+.+.+++..+-. |..++++++|..+++ ++|+...||.+||.+ .+|.|+..+|+.++...
T Consensus 55 ~~ei~~l~~~~d~--~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d-~dG~Is~~eL~~vl~~l 121 (160)
T COG5126 55 EAEINKLFEEIDA--GNETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKD-HDGYISIGELRRVLKSL 121 (160)
T ss_pred HHHHHHHHHhccC--CCCccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCC-CCceecHHHHHHHHHhh
Confidence 3567788888875 889999999998873 355599999999988 99999999999988744
No 13
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=91.60 E-value=0.51 Score=35.50 Aligned_cols=43 Identities=19% Similarity=0.259 Sum_probs=34.8
Q ss_pred cceeHhHHHhhc-------CChHHHHHHHHHHhhhhccccccHHHHHHHHH
Q 008622 267 EFIEKDRLLEFL-------QNERHVKYMLKLFVGAARSGKINKSDFKKWVI 310 (559)
Q Consensus 267 ~~i~~~dl~~~~-------~~~e~a~~af~lfd~~~~~g~Is~~~~~~~v~ 310 (559)
..|+.++|...+ .+++++..+|..+|.+ .+|.|+.+||...+.
T Consensus 3 G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~-~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 3 GKITREEFRRALSKLGIKDLSEEEVDRLFREFDTD-GDGYISFDEFISMMQ 52 (54)
T ss_dssp SEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTS-SSSSEEHHHHHHHHH
T ss_pred CEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccC-CCCCCCHHHHHHHHH
Confidence 457788887655 3455699999999999 999999999987764
No 14
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=91.41 E-value=0.67 Score=39.52 Aligned_cols=65 Identities=17% Similarity=0.214 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhcccccCCCcc-ceeHhHHHhhcC-----------ChHHHHHHHHHHhhhhccccccHHHHHHHHHHH
Q 008622 247 SEAKHLADKIIANIGSDPQSE-FIEKDRLLEFLQ-----------NERHVKYMLKLFVGAARSGKINKSDFKKWVIKV 312 (559)
Q Consensus 247 ~~a~~lAr~if~~~~~~~g~~-~i~~~dl~~~~~-----------~~e~a~~af~lfd~~~~~g~Is~~~~~~~v~~i 312 (559)
..|-.-++++|..+....|.. +|+.++|...+. .+++..+++.-+|.+ ++|.|+.+||...+..+
T Consensus 6 e~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n-~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 6 EGAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSN-KDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCC-CCCCCCHHHHHHHHHHH
Confidence 456777888899999514554 599999998872 223489999999988 99999999998776554
No 15
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=90.90 E-value=0.58 Score=39.73 Aligned_cols=64 Identities=14% Similarity=0.217 Sum_probs=49.5
Q ss_pred HHHHHHHHHhcc-cccCCCcc-ceeHhHHHhhcCCh-----------HHHHHHHHHHhhhhccccccHHHHHHHHHHHH
Q 008622 248 EAKHLADKIIAN-IGSDPQSE-FIEKDRLLEFLQNE-----------RHVKYMLKLFVGAARSGKINKSDFKKWVIKVY 313 (559)
Q Consensus 248 ~a~~lAr~if~~-~~~~~g~~-~i~~~dl~~~~~~~-----------e~a~~af~lfd~~~~~g~Is~~~~~~~v~~i~ 313 (559)
.|-..-..+|+. +.+ .|.. +|+.++|..++..+ +++.+++.-+|.+ .+|.|+.+||...+.++-
T Consensus 6 ~~i~~l~~~F~~y~~~-dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d-~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 6 RCIESLIAVFQKYAGK-DGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLN-SDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHHHHHHhcc-CCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCC-CCCcCcHHHHHHHHHHHH
Confidence 344555778888 444 5544 99999999988543 3489999999988 999999999998887653
No 16
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=90.75 E-value=0.71 Score=36.07 Aligned_cols=53 Identities=15% Similarity=0.357 Sum_probs=42.7
Q ss_pred HHHhcccccCCCccceeHhHHHhhcC---C---hH----HHHHHHHHHhhhhccccccHHHHHHH
Q 008622 254 DKIIANIGSDPQSEFIEKDRLLEFLQ---N---ER----HVKYMLKLFVGAARSGKINKSDFKKW 308 (559)
Q Consensus 254 r~if~~~~~~~g~~~i~~~dl~~~~~---~---~e----~a~~af~lfd~~~~~g~Is~~~~~~~ 308 (559)
+++|..+-. .+..+|+.++|..++. . ++ .+..+|..+|.+ .+|.|+.+||...
T Consensus 3 ~~~F~~~D~-d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d-~dG~i~~~Ef~~~ 65 (66)
T PF13499_consen 3 KEAFKKFDK-DGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTD-GDGRISFDEFLNF 65 (66)
T ss_dssp HHHHHHHST-TSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTT-SSSSEEHHHHHHH
T ss_pred HHHHHHHcC-CccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCC-CcCCCcHHHHhcc
Confidence 578888888 8889999999988762 1 22 256669999999 9999999999865
No 17
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=90.31 E-value=0.84 Score=38.60 Aligned_cols=64 Identities=16% Similarity=0.212 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhcccc-cCCCcc-ceeHhHHHhhcC-----------ChHHHHHHHHHHhhhhccccccHHHHHHHHHHH
Q 008622 247 SEAKHLADKIIANIG-SDPQSE-FIEKDRLLEFLQ-----------NERHVKYMLKLFVGAARSGKINKSDFKKWVIKV 312 (559)
Q Consensus 247 ~~a~~lAr~if~~~~-~~~g~~-~i~~~dl~~~~~-----------~~e~a~~af~lfd~~~~~g~Is~~~~~~~v~~i 312 (559)
..|..-.+++|..+. + .|.. .|+.+++...+. +++++.+++..+|.+ .+|.|+.++|...+.+.
T Consensus 5 e~~~~~l~~~F~~fDd~-dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d-~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 5 ETAMETLINVFHAHSGK-EGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDEN-GDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHHHHhcc-cCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCC-CCCcCcHHHHHHHHHHH
Confidence 346677888999996 7 6777 499999987763 345599999999988 99999999998766544
No 18
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=90.17 E-value=1.1 Score=38.17 Aligned_cols=62 Identities=13% Similarity=0.194 Sum_probs=50.6
Q ss_pred HHHHHHhcccccCCCccceeHhHHHhhcC----ChHHHHHHHHHHhhhhccccccHHHHHHHHHHHHH
Q 008622 251 HLADKIIANIGSDPQSEFIEKDRLLEFLQ----NERHVKYMLKLFVGAARSGKINKSDFKKWVIKVYK 314 (559)
Q Consensus 251 ~lAr~if~~~~~~~g~~~i~~~dl~~~~~----~~e~a~~af~lfd~~~~~g~Is~~~~~~~v~~i~~ 314 (559)
.-.+.+|..+.. .+..+|+.+++.+.+. +++++.+++..+|.+ .+|.|+.++|...+..+.+
T Consensus 10 ~~l~~~F~~~D~-d~~G~Is~~el~~~l~~~~~~~~ev~~i~~~~d~~-~~g~I~~~eF~~~~~~~~~ 75 (96)
T smart00027 10 AKYEQIFRSLDK-NQDGTVTGAQAKPILLKSGLPQTLLAKIWNLADID-NDGELDKDEFALAMHLIYR 75 (96)
T ss_pred HHHHHHHHHhCC-CCCCeEeHHHHHHHHHHcCCCHHHHHHHHHHhcCC-CCCCcCHHHHHHHHHHHHH
Confidence 456778999887 7888999999988862 334599999999988 8999999999887766653
No 19
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=89.48 E-value=0.82 Score=38.71 Aligned_cols=61 Identities=11% Similarity=0.223 Sum_probs=46.9
Q ss_pred HHHHHHhcccccCCC-ccceeHhHHHhhcC---------ChHHHHHHHHHHhhhhccccccHHHHHHHHHHH
Q 008622 251 HLADKIIANIGSDPQ-SEFIEKDRLLEFLQ---------NERHVKYMLKLFVGAARSGKINKSDFKKWVIKV 312 (559)
Q Consensus 251 ~lAr~if~~~~~~~g-~~~i~~~dl~~~~~---------~~e~a~~af~lfd~~~~~g~Is~~~~~~~v~~i 312 (559)
..-=.+|..++...| ..+|+.++|..++. +++++.+.+.-+|.+ ++|.|+.++|...+.++
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d-~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRN-KDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCC-CCCCCcHHHHHHHHHHH
Confidence 334457888886234 56999999988872 455699999999988 99999999998777654
No 20
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=87.95 E-value=1.3 Score=41.08 Aligned_cols=60 Identities=18% Similarity=0.317 Sum_probs=47.2
Q ss_pred HHHHhcccccCCCccceeHhHHHhhcC-----------ChHHHHHHHHHHhhhhccccccHHHHHHHHHHHHH
Q 008622 253 ADKIIANIGSDPQSEFIEKDRLLEFLQ-----------NERHVKYMLKLFVGAARSGKINKSDFKKWVIKVYK 314 (559)
Q Consensus 253 Ar~if~~~~~~~g~~~i~~~dl~~~~~-----------~~e~a~~af~lfd~~~~~g~Is~~~~~~~v~~i~~ 314 (559)
.+.++..+.. .|...|..++|...+. ..++..+||.+||.+ ++|.||.++++..+.+...
T Consensus 46 l~~~~~~~D~-dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d-~~G~Is~~el~~~l~~lg~ 116 (151)
T KOG0027|consen 46 LRDLIKEIDL-DGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKD-GDGFISASELKKVLTSLGE 116 (151)
T ss_pred HHHHHHHhCC-CCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccC-CCCcCcHHHHHHHHHHhCC
Confidence 4456666666 6778899998887764 122489999999999 9999999999999887763
No 21
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=87.63 E-value=2.2 Score=36.25 Aligned_cols=67 Identities=12% Similarity=0.106 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhcccccCCCccceeHhHHHhhcCC-------h-HHHHHHHHHHhhhhccccccHHHHHHHHHHHHH
Q 008622 247 SEAKHLADKIIANIGSDPQSEFIEKDRLLEFLQN-------E-RHVKYMLKLFVGAARSGKINKSDFKKWVIKVYK 314 (559)
Q Consensus 247 ~~a~~lAr~if~~~~~~~g~~~i~~~dl~~~~~~-------~-e~a~~af~lfd~~~~~g~Is~~~~~~~v~~i~~ 314 (559)
.+|...-+.+|+.+.+..|..+|+.++|...+.+ + +++.+.+.-+|.+ ++|.|+.+||..-+...-.
T Consensus 4 E~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d-~DG~I~F~EF~~l~~~l~~ 78 (89)
T cd05022 4 EKAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVN-QDSKLSFEEFWELIGELAK 78 (89)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCC-CCCCCcHHHHHHHHHHHHH
Confidence 3566677888988885236669999999876532 2 4489999999988 9999999999887766543
No 22
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=87.02 E-value=1.9 Score=35.93 Aligned_cols=65 Identities=17% Similarity=0.239 Sum_probs=50.3
Q ss_pred HHHHHHHHHhcccccC-CCccceeHhHHHhhcC-----------ChHHHHHHHHHHhhhhccccccHHHHHHHHHHHH
Q 008622 248 EAKHLADKIIANIGSD-PQSEFIEKDRLLEFLQ-----------NERHVKYMLKLFVGAARSGKINKSDFKKWVIKVY 313 (559)
Q Consensus 248 ~a~~lAr~if~~~~~~-~g~~~i~~~dl~~~~~-----------~~e~a~~af~lfd~~~~~g~Is~~~~~~~v~~i~ 313 (559)
+..+-.+++|..+.+. .+..+|+.+++..++. +++++.+++..+|.+ .+|.|+.++|...+.+..
T Consensus 5 ~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~-~~g~I~f~eF~~~~~~~~ 81 (88)
T cd00213 5 KAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVN-KDGKVDFQEFLVLIGKLA 81 (88)
T ss_pred HHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccC-CCCcCcHHHHHHHHHHHH
Confidence 4445577889888862 2677899999988752 145599999999987 899999999988876653
No 23
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=85.42 E-value=2.1 Score=31.49 Aligned_cols=53 Identities=19% Similarity=0.221 Sum_probs=40.1
Q ss_pred HHHhcccccCCCccceeHhHHHhhc------CChHHHHHHHHHHhhhhccccccHHHHHHH
Q 008622 254 DKIIANIGSDPQSEFIEKDRLLEFL------QNERHVKYMLKLFVGAARSGKINKSDFKKW 308 (559)
Q Consensus 254 r~if~~~~~~~g~~~i~~~dl~~~~------~~~e~a~~af~lfd~~~~~g~Is~~~~~~~ 308 (559)
+++|..+.. .+...++.+++...+ ..++.+..+|..+|.+ ++|.|+.+++...
T Consensus 3 ~~~f~~~d~-~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ef~~~ 61 (63)
T cd00051 3 REAFRLFDK-DGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKD-GDGKIDFEEFLEL 61 (63)
T ss_pred HHHHHHhCC-CCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCC-CCCeEeHHHHHHH
Confidence 456777766 566789999988766 2344478899999987 8899999988754
No 24
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=85.16 E-value=2 Score=36.17 Aligned_cols=63 Identities=13% Similarity=0.251 Sum_probs=49.6
Q ss_pred HHHHHHHHHhcccccCC--CccceeHhHHHhhcC-------C----hHHHHHHHHHHhhhhccccccHHHHHHHHHHH
Q 008622 248 EAKHLADKIIANIGSDP--QSEFIEKDRLLEFLQ-------N----ERHVKYMLKLFVGAARSGKINKSDFKKWVIKV 312 (559)
Q Consensus 248 ~a~~lAr~if~~~~~~~--g~~~i~~~dl~~~~~-------~----~e~a~~af~lfd~~~~~g~Is~~~~~~~v~~i 312 (559)
+|-.-.-++|+..+. . +..+|+.++|...|. + ++++.+.|..+|.+ .+|.|+.++|...+.+.
T Consensus 5 ~~i~~~~~~f~~y~~-~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d-~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 5 KAIETIINVFHQYSV-RKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTN-QDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHHHhc-cCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCC-CCCcCcHHHHHHHHHHH
Confidence 455566778888886 4 256899999988874 1 45599999999988 99999999998777654
No 25
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=84.52 E-value=1.7 Score=46.94 Aligned_cols=63 Identities=14% Similarity=0.193 Sum_probs=54.9
Q ss_pred CCChHHHHHHHHHHhcccccCCCccceeHhHHHhhcCChHHHHHHHHHHhhhhccccccHHHHHHHHHHHHH
Q 008622 243 IKSVSEAKHLADKIIANIGSDPQSEFIEKDRLLEFLQNERHVKYMLKLFVGAARSGKINKSDFKKWVIKVYK 314 (559)
Q Consensus 243 i~s~~~a~~lAr~if~~~~~~~g~~~i~~~dl~~~~~~~e~a~~af~lfd~~~~~g~Is~~~~~~~v~~i~~ 314 (559)
+++-...+..++.+|..+.. .|..+|+.+|+.. +...|..+|.+ ++|.|+.+||...+...|+
T Consensus 326 ~~~~~~~~~~l~~aF~~~D~-dgdG~Is~~E~~~-------~~~~F~~~D~d-~DG~Is~eEf~~~~~~~~~ 388 (391)
T PRK12309 326 LEGGEAFTHAAQEIFRLYDL-DGDGFITREEWLG-------SDAVFDALDLN-HDGKITPEEMRAGLGAALR 388 (391)
T ss_pred hhccChhhHHHHHHHHHhCC-CCCCcCcHHHHHH-------HHHHHHHhCCC-CCCCCcHHHHHHHHHHHHH
Confidence 56667778889999999998 8999999999853 67889999998 9999999999999888775
No 26
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=84.25 E-value=3.3 Score=35.08 Aligned_cols=64 Identities=16% Similarity=0.198 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhcccccCCC-ccceeHhHHHhhcC-----------ChHHHHHHHHHHhhhhccccccHHHHHHHHHH
Q 008622 247 SEAKHLADKIIANIGSDPQ-SEFIEKDRLLEFLQ-----------NERHVKYMLKLFVGAARSGKINKSDFKKWVIK 311 (559)
Q Consensus 247 ~~a~~lAr~if~~~~~~~g-~~~i~~~dl~~~~~-----------~~e~a~~af~lfd~~~~~g~Is~~~~~~~v~~ 311 (559)
..|..--+..|..+....| ..+|+.+++...+. +++++.+.+..+|.+ ++|.|+.++|...+..
T Consensus 4 ~~~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~-~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 4 EHAMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQN-RDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCC-CCCcCcHHHHHHHHHH
Confidence 3455666777888864133 57899999987642 334588999999988 8999999999866543
No 27
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=82.80 E-value=1.8 Score=28.83 Aligned_cols=26 Identities=15% Similarity=0.287 Sum_probs=22.3
Q ss_pred HHHHHHHHhhhhccccccHHHHHHHHH
Q 008622 284 VKYMLKLFVGAARSGKINKSDFKKWVI 310 (559)
Q Consensus 284 a~~af~lfd~~~~~g~Is~~~~~~~v~ 310 (559)
..++|..+|.+ .+|.|+.+|+...+.
T Consensus 2 l~~~F~~~D~d-~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 2 LREAFKMFDKD-GDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHH-TT-SSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCC-CCCcCcHHHHHHHHH
Confidence 57899999999 999999999998775
No 28
>PTZ00184 calmodulin; Provisional
Probab=82.43 E-value=3.1 Score=37.24 Aligned_cols=57 Identities=18% Similarity=0.227 Sum_probs=42.7
Q ss_pred HHHHHHhcccccCCCccceeHhHHHhhc------CChHHHHHHHHHHhhhhccccccHHHHHHHH
Q 008622 251 HLADKIIANIGSDPQSEFIEKDRLLEFL------QNERHVKYMLKLFVGAARSGKINKSDFKKWV 309 (559)
Q Consensus 251 ~lAr~if~~~~~~~g~~~i~~~dl~~~~------~~~e~a~~af~lfd~~~~~g~Is~~~~~~~v 309 (559)
..++.+|..+.. .|..+|+.+++..++ .+++++.+++..+|.+ ++|.|+.++|...+
T Consensus 84 ~~~~~~F~~~D~-~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~-~~g~i~~~ef~~~~ 146 (149)
T PTZ00184 84 EEIKEAFKVFDR-DGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVD-GDGQINYEEFVKMM 146 (149)
T ss_pred HHHHHHHHhhCC-CCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCC-CCCcCcHHHHHHHH
Confidence 446778888887 777888988887765 2344588888888877 88888888876544
No 29
>PLN02964 phosphatidylserine decarboxylase
Probab=82.21 E-value=2.9 Score=47.99 Aligned_cols=59 Identities=8% Similarity=0.125 Sum_probs=50.0
Q ss_pred HHHHHHhcccccCCCccceeHhHHHhhc------CChHHHHHHHHHHhhhhccccccHHHHHHHHHH
Q 008622 251 HLADKIIANIGSDPQSEFIEKDRLLEFL------QNERHVKYMLKLFVGAARSGKINKSDFKKWVIK 311 (559)
Q Consensus 251 ~lAr~if~~~~~~~g~~~i~~~dl~~~~------~~~e~a~~af~lfd~~~~~g~Is~~~~~~~v~~ 311 (559)
..++++|..+.. ++...|+.++|...+ .++++..++|..||.+ ++|.|+.+|++..+.+
T Consensus 179 ~fi~~mf~~~D~-DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkD-gdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 179 SFARRILAIVDY-DEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLN-GDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHHHhCC-CCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCC-CCCcCCHHHHHHHHHh
Confidence 468899998887 788899999998765 2455599999999998 9999999999988766
No 30
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=82.01 E-value=2.3 Score=41.31 Aligned_cols=62 Identities=15% Similarity=0.345 Sum_probs=49.7
Q ss_pred HHHHHHhcccccCCCccc-eeHhHHHhhcC-------ChHHHHHHHHHHhhhhccccccHHHHHHHHHHHHH
Q 008622 251 HLADKIIANIGSDPQSEF-IEKDRLLEFLQ-------NERHVKYMLKLFVGAARSGKINKSDFKKWVIKVYK 314 (559)
Q Consensus 251 ~lAr~if~~~~~~~g~~~-i~~~dl~~~~~-------~~e~a~~af~lfd~~~~~g~Is~~~~~~~v~~i~~ 314 (559)
-++.||+..+.. .+.+. ++++++.+.+. .++..+-||.++|.+ .+|.|+++++...+.....
T Consensus 66 p~~~rI~~~f~~-~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~-~~G~I~reel~~iv~~~~~ 135 (187)
T KOG0034|consen 66 PLADRIIDRFDT-DGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLD-GDGFISREELKQILRMMVG 135 (187)
T ss_pred cHHHHHHHHHhc-cCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCC-CCCcCcHHHHHHHHHHHHc
Confidence 467888888887 55555 99999998863 222378899999988 9999999999998877764
No 31
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=80.94 E-value=4.4 Score=34.26 Aligned_cols=63 Identities=14% Similarity=0.222 Sum_probs=48.8
Q ss_pred HHHHHHHHHhcccc-cCCCcc-ceeHhHHHhhcC-----------ChHHHHHHHHHHhhhhccccccHHHHHHHHHHH
Q 008622 248 EAKHLADKIIANIG-SDPQSE-FIEKDRLLEFLQ-----------NERHVKYMLKLFVGAARSGKINKSDFKKWVIKV 312 (559)
Q Consensus 248 ~a~~lAr~if~~~~-~~~g~~-~i~~~dl~~~~~-----------~~e~a~~af~lfd~~~~~g~Is~~~~~~~v~~i 312 (559)
.|-.--+.+|..+. + .|.. +|+.++|...+. +++++.+.+.-.|++ ++|.|+.++|...+...
T Consensus 5 ~~~~~l~~aF~~fD~~-dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n-~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 5 KAMVALIDVFHQYSGR-EGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSD-GDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHHHhccc-CCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCC-CCCcCcHHHHHHHHHHH
Confidence 45666788899997 5 5666 599999876653 334589999999988 99999999998776554
No 32
>PTZ00183 centrin; Provisional
Probab=80.89 E-value=2.9 Score=38.10 Aligned_cols=58 Identities=12% Similarity=0.131 Sum_probs=45.2
Q ss_pred HHHHHHhcccccCCCccceeHhHHHhhcC------ChHHHHHHHHHHhhhhccccccHHHHHHHHH
Q 008622 251 HLADKIIANIGSDPQSEFIEKDRLLEFLQ------NERHVKYMLKLFVGAARSGKINKSDFKKWVI 310 (559)
Q Consensus 251 ~lAr~if~~~~~~~g~~~i~~~dl~~~~~------~~e~a~~af~lfd~~~~~g~Is~~~~~~~v~ 310 (559)
...+.+|..+.. .+..+|+.+++..++. +++++.++|..||.+ ++|.|+.+++...+.
T Consensus 90 ~~l~~~F~~~D~-~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~-~~g~i~~~ef~~~~~ 153 (158)
T PTZ00183 90 EEILKAFRLFDD-DKTGKISLKNLKRVAKELGETITDEELQEMIDEADRN-GDGEISEEEFYRIMK 153 (158)
T ss_pred HHHHHHHHHhCC-CCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCC-CCCcCcHHHHHHHHh
Confidence 345788988887 7788899999987752 344488999999987 889999998876553
No 33
>PTZ00184 calmodulin; Provisional
Probab=80.63 E-value=3.3 Score=37.10 Aligned_cols=60 Identities=15% Similarity=0.299 Sum_probs=47.7
Q ss_pred HHHHHHhcccccCCCccceeHhHHHhhcC-------ChHHHHHHHHHHhhhhccccccHHHHHHHHHHH
Q 008622 251 HLADKIIANIGSDPQSEFIEKDRLLEFLQ-------NERHVKYMLKLFVGAARSGKINKSDFKKWVIKV 312 (559)
Q Consensus 251 ~lAr~if~~~~~~~g~~~i~~~dl~~~~~-------~~e~a~~af~lfd~~~~~g~Is~~~~~~~v~~i 312 (559)
...+++|..+.. ++...++.+++..++. .++.+..+|..+|.+ ++|.|+.+++...+..+
T Consensus 47 ~~~~~~~~~~d~-~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~-~~g~i~~~e~~~~l~~~ 113 (149)
T PTZ00184 47 AELQDMINEVDA-DGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRD-GNGFISAAELRHVMTNL 113 (149)
T ss_pred HHHHHHHHhcCc-CCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCC-CCCeEeHHHHHHHHHHH
Confidence 356788888887 7778899999987653 223488999999988 99999999998887654
No 34
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=80.52 E-value=2.1 Score=27.39 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.0
Q ss_pred HHHHHHHhhhhccccccHHHHHHH
Q 008622 285 KYMLKLFVGAARSGKINKSDFKKW 308 (559)
Q Consensus 285 ~~af~lfd~~~~~g~Is~~~~~~~ 308 (559)
+++|..+|.+ ++|.|+.+|+...
T Consensus 2 ~~~F~~~D~d-~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTD-GDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTT-SSSEEEHHHHHHH
T ss_pred HHHHHHHcCC-CCCcCCHHHHHHH
Confidence 4689999999 9999999998863
No 35
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=77.82 E-value=3.5 Score=38.80 Aligned_cols=56 Identities=18% Similarity=0.355 Sum_probs=44.2
Q ss_pred HhcccccCCCccceeHhHHHhhcC-------ChHHHHHHHHHHhhhhccccccHHHHHHHHHHHH
Q 008622 256 IIANIGSDPQSEFIEKDRLLEFLQ-------NERHVKYMLKLFVGAARSGKINKSDFKKWVIKVY 313 (559)
Q Consensus 256 if~~~~~~~g~~~i~~~dl~~~~~-------~~e~a~~af~lfd~~~~~g~Is~~~~~~~v~~i~ 313 (559)
+-.-+.+ .|...|+.+||.+.++ +.|++..+|.+||-| .+|.||..+++....+..
T Consensus 74 ll~d~dk-~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D-~~Gkis~~~lkrvakeLg 136 (172)
T KOG0028|consen 74 LLADVDK-EGSGKITFEDFRRVMTVKLGERDTKEEIKKAFRLFDDD-KTGKISQRNLKRVAKELG 136 (172)
T ss_pred HHHhhhh-ccCceechHHHHHHHHHHHhccCcHHHHHHHHHccccc-CCCCcCHHHHHHHHHHhC
Confidence 4444556 7788999999998852 445599999999988 999999999887776554
No 36
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=77.10 E-value=7 Score=34.93 Aligned_cols=60 Identities=12% Similarity=0.117 Sum_probs=48.9
Q ss_pred HHHHHHHHHhcccccCCCccceeHhHHHhhc--CChHHHHHHHHHHhhhhccccccHHHHHHHH
Q 008622 248 EAKHLADKIIANIGSDPQSEFIEKDRLLEFL--QNERHVKYMLKLFVGAARSGKINKSDFKKWV 309 (559)
Q Consensus 248 ~a~~lAr~if~~~~~~~g~~~i~~~dl~~~~--~~~e~a~~af~lfd~~~~~g~Is~~~~~~~v 309 (559)
.-+.-++-.|..+.. .+..+|+.++|..+. +.++.+...|..+|.+ .+|.||++|+..-+
T Consensus 45 ~~~~~l~w~F~~lD~-d~DG~Ls~~EL~~~~l~~~e~~~~~f~~~~D~n-~Dg~IS~~Ef~~cl 106 (116)
T cd00252 45 MCKDPVGWMFNQLDG-NYDGKLSHHELAPIRLDPNEHCIKPFFESCDLD-KDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHHCC-CCCCcCCHHHHHHHHccchHHHHHHHHHHHCCC-CCCCCCHHHHHHHH
Confidence 445667888989988 788899999998773 3344588899999988 99999999988766
No 37
>PTZ00183 centrin; Provisional
Probab=76.29 E-value=5.5 Score=36.20 Aligned_cols=59 Identities=19% Similarity=0.367 Sum_probs=46.6
Q ss_pred HHHHHhcccccCCCccceeHhHHHhhcC-------ChHHHHHHHHHHhhhhccccccHHHHHHHHHHH
Q 008622 252 LADKIIANIGSDPQSEFIEKDRLLEFLQ-------NERHVKYMLKLFVGAARSGKINKSDFKKWVIKV 312 (559)
Q Consensus 252 lAr~if~~~~~~~g~~~i~~~dl~~~~~-------~~e~a~~af~lfd~~~~~g~Is~~~~~~~v~~i 312 (559)
....+|..+.. .+...|+.+++...+. .+++.+++|..+|.+ ++|.|+.+++...+...
T Consensus 54 ~~~~l~~~~d~-~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~-~~G~i~~~e~~~~l~~~ 119 (158)
T PTZ00183 54 EIKQMIADVDK-DGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDD-KTGKISLKNLKRVAKEL 119 (158)
T ss_pred HHHHHHHHhCC-CCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCC-CCCcCcHHHHHHHHHHh
Confidence 46677877777 7777899999976542 233488999999988 99999999999888654
No 38
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=68.70 E-value=8.3 Score=24.63 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=17.0
Q ss_pred CcCCCCEEEE-----CCeEEEEEEEe
Q 008622 394 PFDVGDRCII-----DGVQMVVDEMN 414 (559)
Q Consensus 394 PFdVGDrI~I-----~g~~g~VeeI~ 414 (559)
+|.+||.|.| .|..|.|.++.
T Consensus 1 ~~~~G~~V~I~~G~~~g~~g~i~~i~ 26 (28)
T smart00739 1 KFEVGDTVRVIAGPFKGKVGKVLEVD 26 (28)
T ss_pred CCCCCCEEEEeECCCCCcEEEEEEEc
Confidence 5789999999 35788888874
No 39
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=63.03 E-value=9.4 Score=29.56 Aligned_cols=30 Identities=20% Similarity=0.301 Sum_probs=26.7
Q ss_pred HHHHHHHHhhhhccccccHHHHHHHHHHHHH
Q 008622 284 VKYMLKLFVGAARSGKINKSDFKKWVIKVYK 314 (559)
Q Consensus 284 a~~af~lfd~~~~~g~Is~~~~~~~v~~i~~ 314 (559)
.+++|..+|.+ ++|.|+.+|+...+.....
T Consensus 2 l~~~F~~~D~d-~~G~i~~~el~~~~~~~~~ 31 (66)
T PF13499_consen 2 LKEAFKKFDKD-GDGYISKEELRRALKHLGR 31 (66)
T ss_dssp HHHHHHHHSTT-SSSEEEHHHHHHHHHHTTS
T ss_pred HHHHHHHHcCC-ccCCCCHHHHHHHHHHhcc
Confidence 57899999999 9999999999999887753
No 40
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=62.22 E-value=13 Score=35.27 Aligned_cols=55 Identities=20% Similarity=0.352 Sum_probs=44.5
Q ss_pred HHHhcccccCCCccceeHhHHHhhcC------ChHHHHHHHHHHhhhhccccccHHHHHHHHH
Q 008622 254 DKIIANIGSDPQSEFIEKDRLLEFLQ------NERHVKYMLKLFVGAARSGKINKSDFKKWVI 310 (559)
Q Consensus 254 r~if~~~~~~~g~~~i~~~dl~~~~~------~~e~a~~af~lfd~~~~~g~Is~~~~~~~v~ 310 (559)
+..|+-+.+ .+..+|+.+++.+++. ++|++.+.+..+|.+ ++|.|+.++|+..+.
T Consensus 95 ~~aF~~fD~-d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d-~dG~i~~~eF~~~~~ 155 (160)
T COG5126 95 REAFKLFDK-DHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDED-GDGEIDYEEFKKLIK 155 (160)
T ss_pred HHHHHHhCC-CCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCC-CCceEeHHHHHHHHh
Confidence 445666667 7788999999999974 444599999999988 999999999987654
No 41
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=60.51 E-value=9.8 Score=22.95 Aligned_cols=26 Identities=31% Similarity=0.485 Sum_probs=20.8
Q ss_pred HHHHHHHHhhhhccccccHHHHHHHHH
Q 008622 284 VKYMLKLFVGAARSGKINKSDFKKWVI 310 (559)
Q Consensus 284 a~~af~lfd~~~~~g~Is~~~~~~~v~ 310 (559)
...+|..+|.+ .+|.|+.+++...+.
T Consensus 2 ~~~~f~~~d~~-~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKD-GDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCC-CCCcEeHHHHHHHHH
Confidence 46788888887 889999998877664
No 42
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=59.79 E-value=20 Score=29.44 Aligned_cols=54 Identities=17% Similarity=0.484 Sum_probs=37.8
Q ss_pred HHHhcccccCCCccceeHhHHHhhcC--------ChHHHHHHHHHHhhhh---ccccccHHHHHHHH
Q 008622 254 DKIIANIGSDPQSEFIEKDRLLEFLQ--------NERHVKYMLKLFVGAA---RSGKINKSDFKKWV 309 (559)
Q Consensus 254 r~if~~~~~~~g~~~i~~~dl~~~~~--------~~e~a~~af~lfd~~~---~~g~Is~~~~~~~v 309 (559)
+.||.+.+. ++.+++.++|.+|+. +++++.+.+.-|..+. ..+.+|.+.|.+.+
T Consensus 3 ~~if~~ys~--~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL 67 (83)
T PF09279_consen 3 EEIFRKYSS--DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFL 67 (83)
T ss_dssp HHHHHHHCT--TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHH
T ss_pred HHHHHHHhC--CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHH
Confidence 568899975 789999999999984 2334666666665442 25677777766655
No 43
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=59.08 E-value=16 Score=33.75 Aligned_cols=65 Identities=14% Similarity=0.140 Sum_probs=52.0
Q ss_pred HHHHHHhcccccCCCccceeHhHHHhhc------CChHHHHHHHHHHhhhhccccccHHHHHHHHHHHHHhhH
Q 008622 251 HLADKIIANIGSDPQSEFIEKDRLLEFL------QNERHVKYMLKLFVGAARSGKINKSDFKKWVIKVYKDRE 317 (559)
Q Consensus 251 ~lAr~if~~~~~~~g~~~i~~~dl~~~~------~~~e~a~~af~lfd~~~~~g~Is~~~~~~~v~~i~~eRk 317 (559)
.--+.+|.-+.. .|..+|+.++|...+ |++++....+.-+|.+ ++|.|+.++|..-+.+...+..
T Consensus 8 ~el~~~F~~fD~-d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~d-g~g~I~~~eF~~l~~~~~~~~~ 78 (151)
T KOG0027|consen 8 LELKEAFQLFDK-DGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLD-GDGTIDFEEFLDLMEKLGEEKT 78 (151)
T ss_pred HHHHHHHHHHCC-CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCC-CCCeEcHHHHHHHHHhhhcccc
Confidence 345678888888 788889988887765 4566699999999988 9999999999988877665443
No 44
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=57.31 E-value=25 Score=30.94 Aligned_cols=39 Identities=18% Similarity=0.141 Sum_probs=28.3
Q ss_pred CCcCCCCEE-EECCeEEEEEEEeeEEEEEEecCCcEEEEe
Q 008622 393 HPFDVGDRC-IIDGVQMVVDEMNILTTIFLRYDNERIYYP 431 (559)
Q Consensus 393 ~PFdVGDrI-~I~g~~g~VeeI~Ll~T~f~~~dg~~V~IP 431 (559)
.-.++||+| .++|..|+|.+++=-+-++...+|..+.+-
T Consensus 51 ~~Lk~Gd~VvT~gGi~G~Vv~i~~~~v~lei~~g~~i~~~ 90 (106)
T PRK05585 51 SSLAKGDEVVTNGGIIGKVTKVSEDFVIIELNDDTEIKIQ 90 (106)
T ss_pred HhcCCCCEEEECCCeEEEEEEEeCCEEEEEECCCeEEEEE
Confidence 456899999 558999999999865445555666555543
No 45
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=54.26 E-value=28 Score=33.86 Aligned_cols=64 Identities=14% Similarity=0.287 Sum_probs=50.6
Q ss_pred ChHHHHHHHHHHhcccccCC-CccceeHhHHHhhcC---ChHHHHHHHHHHhhhhcccc-ccHHHHHHHHHHH
Q 008622 245 SVSEAKHLADKIIANIGSDP-QSEFIEKDRLLEFLQ---NERHVKYMLKLFVGAARSGK-INKSDFKKWVIKV 312 (559)
Q Consensus 245 s~~~a~~lAr~if~~~~~~~-g~~~i~~~dl~~~~~---~~e~a~~af~lfd~~~~~g~-Is~~~~~~~v~~i 312 (559)
|..|.++|= ..|+++.+ + ++.+++.++|..... +.- +..++..|+.+ .+|. |+.++|.+.+.-.
T Consensus 28 s~~EI~~L~-~rF~kl~~-~~~~g~lt~eef~~i~~~~~Np~-~~rI~~~f~~~-~~~~~v~F~~Fv~~ls~f 96 (187)
T KOG0034|consen 28 SANEIERLY-ERFKKLDR-NNGDGYLTKEEFLSIPELALNPL-ADRIIDRFDTD-GNGDPVDFEEFVRLLSVF 96 (187)
T ss_pred CHHHHHHHH-HHHHHhcc-ccccCccCHHHHHHHHHHhcCcH-HHHHHHHHhcc-CCCCccCHHHHHHHHhhh
Confidence 466666654 45999998 7 899999999987652 333 89999999988 8888 9999999887544
No 46
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=53.74 E-value=40 Score=29.48 Aligned_cols=58 Identities=21% Similarity=0.263 Sum_probs=45.8
Q ss_pred HHHHhcccccCCCccceeHhHHHhhcC----ChHHHHHHHHHHhhhhccccccHHHHHHHHHHHH
Q 008622 253 ADKIIANIGSDPQSEFIEKDRLLEFLQ----NERHVKYMLKLFVGAARSGKINKSDFKKWVIKVY 313 (559)
Q Consensus 253 Ar~if~~~~~~~g~~~i~~~dl~~~~~----~~e~a~~af~lfd~~~~~g~Is~~~~~~~v~~i~ 313 (559)
=+.+|.++. ++..+|+-++...||. ..+....++.+-|.+ .+|.++.+||.-++-=++
T Consensus 12 y~~~F~~l~--~~~g~isg~~a~~~f~~S~L~~~~L~~IW~LaD~~-~dG~L~~~EF~iAm~Li~ 73 (104)
T PF12763_consen 12 YDQIFQSLD--PQDGKISGDQAREFFMKSGLPRDVLAQIWNLADID-NDGKLDFEEFAIAMHLIN 73 (104)
T ss_dssp HHHHHHCTS--SSTTEEEHHHHHHHHHHTTSSHHHHHHHHHHH-SS-SSSEEEHHHHHHHHHHHH
T ss_pred HHHHHHhcC--CCCCeEeHHHHHHHHHHcCCCHHHHHHHHhhhcCC-CCCcCCHHHHHHHHHHHH
Confidence 467898876 5678899999999973 333489999999988 999999999987765554
No 47
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=49.00 E-value=55 Score=27.51 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=27.2
Q ss_pred CCcCCCCEEEE-CCeEEEEEEEeeEEEEEEecCCcEEEE
Q 008622 393 HPFDVGDRCII-DGVQMVVDEMNILTTIFLRYDNERIYY 430 (559)
Q Consensus 393 ~PFdVGDrI~I-~g~~g~VeeI~Ll~T~f~~~dg~~V~I 430 (559)
.-.++||+|.. +|..|+|.+++=-+-++...+|..+.+
T Consensus 36 ~~L~~Gd~VvT~gGi~G~V~~i~d~~v~vei~~g~~i~~ 74 (84)
T TIGR00739 36 ESLKKGDKVLTIGGIIGTVTKIAENTIVIELNDNTEITF 74 (84)
T ss_pred HhCCCCCEEEECCCeEEEEEEEeCCEEEEEECCCeEEEE
Confidence 45689999977 679999999985444555555555543
No 48
>cd04466 S1_YloQ_GTPase S1_YloQ_GTPase: YloQ GTase family (also known as YjeQ and CpgA), S1-like RNA-binding domain. Proteins in the YloQ GTase family bind the ribosome and have GTPase activity. The precise role of this family is unknown. The protein structure is composed of three domains: an N-terminal S1 domain, a central GTPase domain, and a C-terminal zinc finger domain. This N-terminal S1 domain binds ssRNA. The central GTPase domain contains nucleotide-binding signature motifs: G1 (walker A), G3 (walker B) and G4 motifs. Experiments show that the bacterial YloQ and YjeQ proteins have low intrinsic GTPase activity. The C-terminal zinc-finger domain has structural similarity to a portion of the DNA-repair protein Rad51. This suggests a possible role for this GTPase as a regulator of translation, perhaps as a translation initiation factor. This family is classified based on the N-terminal S1 domain.
Probab=48.09 E-value=25 Score=27.43 Aligned_cols=29 Identities=24% Similarity=0.413 Sum_probs=21.4
Q ss_pred CCcCCCCEEEEC---CeEEEEEEEeeEEEEEE
Q 008622 393 HPFDVGDRCIID---GVQMVVDEMNILTTIFL 421 (559)
Q Consensus 393 ~PFdVGDrI~I~---g~~g~VeeI~Ll~T~f~ 421 (559)
.+.-|||||.++ +..+.|+++--+.|.|.
T Consensus 36 ~~~~VGD~V~~~~~~~~~~~I~~vl~R~s~l~ 67 (68)
T cd04466 36 NPPAVGDRVEFEPEDDGEGVIEEILPRKNLLI 67 (68)
T ss_pred CCCCCCcEEEEEECCCCcEEEEEEeccceEEE
Confidence 456899999874 45678888877777664
No 49
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=47.31 E-value=19 Score=27.67 Aligned_cols=20 Identities=35% Similarity=0.675 Sum_probs=17.6
Q ss_pred cCCCCEEEE--CCeEEEEEEEe
Q 008622 395 FDVGDRCII--DGVQMVVDEMN 414 (559)
Q Consensus 395 FdVGDrI~I--~g~~g~VeeI~ 414 (559)
|++||.|.. +|-.++|.+++
T Consensus 1 f~~GDvV~LKSGGp~MTV~~v~ 22 (53)
T PF09926_consen 1 FKIGDVVQLKSGGPRMTVTEVG 22 (53)
T ss_pred CCCCCEEEEccCCCCeEEEEcc
Confidence 789999999 68899999874
No 50
>COG5346 Predicted membrane protein [Function unknown]
Probab=47.04 E-value=1.8e+02 Score=26.38 Aligned_cols=17 Identities=35% Similarity=0.368 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHhhh
Q 008622 361 IALVTSQLVLLAFMFGN 377 (559)
Q Consensus 361 la~~g~~~lal~fa~q~ 377 (559)
+++.++..+|++|+++-
T Consensus 113 ~~~Gtv~alAlaFv~~~ 129 (136)
T COG5346 113 LAGGTVFALALAFVIGR 129 (136)
T ss_pred HccchHHHHHHHHHHhh
Confidence 34444455666666653
No 51
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=46.78 E-value=11 Score=29.07 Aligned_cols=19 Identities=26% Similarity=0.392 Sum_probs=10.0
Q ss_pred cCCcCCCCEEEECCeEEEE
Q 008622 392 THPFDVGDRCIIDGVQMVV 410 (559)
Q Consensus 392 ~~PFdVGDrI~I~g~~g~V 410 (559)
..||+.||||++-+..|.-
T Consensus 3 ~Gpf~~GdrVQlTD~Kgr~ 21 (54)
T PF14801_consen 3 RGPFRAGDRVQLTDPKGRK 21 (54)
T ss_dssp --S--TT-EEEEEETT--E
T ss_pred cCCCCCCCEEEEccCCCCe
Confidence 4699999999997766553
No 52
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=46.70 E-value=1.3e+02 Score=28.87 Aligned_cols=31 Identities=23% Similarity=0.357 Sum_probs=25.9
Q ss_pred HhCchhHHHHHHHHHHHHHHHHHhhhhHhHH
Q 008622 352 VMGLLTYKIIALVTSQLVLLAFMFGNTARTC 382 (559)
Q Consensus 352 ilgi~~~~lla~~g~~~lal~fa~q~tl~n~ 382 (559)
++|+++--++...+.+..++||.+|.++.|.
T Consensus 71 I~GlDP~~~~g~~t~a~g~lG~L~GP~~G~~ 101 (173)
T PF08566_consen 71 IMGLDPFMVYGLATLACGALGWLVGPSLGNQ 101 (173)
T ss_pred ccCcCHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 5688887777778888899999999998873
No 53
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=44.64 E-value=27 Score=29.60 Aligned_cols=29 Identities=14% Similarity=0.328 Sum_probs=23.4
Q ss_pred HHHHHHHHhhhhccc-cccHHHHHHHHHHH
Q 008622 284 VKYMLKLFVGAARSG-KINKSDFKKWVIKV 312 (559)
Q Consensus 284 a~~af~lfd~~~~~g-~Is~~~~~~~v~~i 312 (559)
+.++|..||...++| .||.+|++..+.+.
T Consensus 12 ~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~ 41 (93)
T cd05026 12 LIRIFHNYSGKEGDRYKLSKGELKELLQRE 41 (93)
T ss_pred HHHHHHHHHccCCCCCEECHHHHHHHHHHH
Confidence 788999999433887 59999999987653
No 54
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=44.62 E-value=30 Score=29.22 Aligned_cols=27 Identities=11% Similarity=0.257 Sum_probs=23.9
Q ss_pred HHHHHHHHhhhhccccccHHHHHHHHHH
Q 008622 284 VKYMLKLFVGAARSGKINKSDFKKWVIK 311 (559)
Q Consensus 284 a~~af~lfd~~~~~g~Is~~~~~~~v~~ 311 (559)
..++|..||.+ ++|.|+.++++..+.+
T Consensus 12 l~~~F~~~D~d-~~G~Is~~el~~~l~~ 38 (96)
T smart00027 12 YEQIFRSLDKN-QDGTVTGAQAKPILLK 38 (96)
T ss_pred HHHHHHHhCCC-CCCeEeHHHHHHHHHH
Confidence 78899999988 9999999999888754
No 55
>PF00467 KOW: KOW motif; InterPro: IPR005824 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The KOW (Kyprides, Ouzounis, Woese) motif is found in a variety of ribosomal proteins and the bacterial transcription antitermination proteins NusG []. ; PDB: 3BBO_W 2HGJ_X 2HGQ_X 2HGU_X 1NPP_B 1M1G_D 1NPR_A 2XHC_A 2KVQ_G 2JVV_A ....
Probab=43.37 E-value=42 Score=22.62 Aligned_cols=18 Identities=28% Similarity=0.414 Sum_probs=15.9
Q ss_pred CCCEEEE-----CCeEEEEEEEe
Q 008622 397 VGDRCII-----DGVQMVVDEMN 414 (559)
Q Consensus 397 VGDrI~I-----~g~~g~VeeI~ 414 (559)
+||+|.| .|..|.|.+|.
T Consensus 1 ~Gd~V~V~~G~~~G~~G~I~~i~ 23 (32)
T PF00467_consen 1 VGDTVKVISGPFKGKIGKIVEID 23 (32)
T ss_dssp TTSEEEESSSTTTTEEEEEEEEE
T ss_pred CCCEEEEeEcCCCCceEEEEEEE
Confidence 6999999 57999999986
No 56
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=41.96 E-value=35 Score=28.60 Aligned_cols=28 Identities=11% Similarity=0.182 Sum_probs=23.9
Q ss_pred HHHHHHHHHh-hhhccc-cccHHHHHHHHHH
Q 008622 283 HVKYMLKLFV-GAARSG-KINKSDFKKWVIK 311 (559)
Q Consensus 283 ~a~~af~lfd-~~~~~g-~Is~~~~~~~v~~ 311 (559)
+..++|..|| .+ ++| .|+.++++..+..
T Consensus 10 ~l~~~F~~fDd~d-g~G~~Is~~El~~~l~~ 39 (92)
T cd05025 10 TLINVFHAHSGKE-GDKYKLSKKELKDLLQT 39 (92)
T ss_pred HHHHHHHHHhccc-CCCCeECHHHHHHHHHH
Confidence 3889999997 77 999 5999999988854
No 57
>PF09953 DUF2187: Uncharacterized protein conserved in bacteria (DUF2187); InterPro: IPR018690 This family consists of various hypothetical bacterial proteins with known function. It includes the uncharacterised YkvS protein from Bacillus subtilis.
Probab=41.33 E-value=34 Score=26.70 Aligned_cols=20 Identities=30% Similarity=0.438 Sum_probs=17.1
Q ss_pred cCCCCEEEE-CCeEEEEEEEe
Q 008622 395 FDVGDRCII-DGVQMVVDEMN 414 (559)
Q Consensus 395 FdVGDrI~I-~g~~g~VeeI~ 414 (559)
-+|||.|++ +|.+|.|+.+.
T Consensus 4 a~vGdiIefk~g~~G~V~kv~ 24 (57)
T PF09953_consen 4 AKVGDIIEFKDGFTGIVEKVY 24 (57)
T ss_pred cccCcEEEEcCCcEEEEEEEe
Confidence 479999999 57899998876
No 58
>COG4873 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.86 E-value=26 Score=28.04 Aligned_cols=43 Identities=21% Similarity=0.211 Sum_probs=30.2
Q ss_pred HHHhhhhHhHHHHHHHHHhhcCCcCCCCEEEE-CCeEEEEEEEeeEEE
Q 008622 372 AFMFGNTARTCFEAIIFVFVTHPFDVGDRCII-DGVQMVVDEMNILTT 418 (559)
Q Consensus 372 ~fa~q~tl~n~f~s~IfIfv~~PFdVGDrI~I-~g~~g~VeeI~Ll~T 418 (559)
.|.+|+..-. +.+.+ .+.--.|||.|+. ||-.|.||+++=-+.
T Consensus 5 ~~~~~~a~~~-~~~~~---~m~~a~vgniief~dgl~g~vek~nensv 48 (81)
T COG4873 5 AKYFQKALLC-LKERK---LMKIAKVGNIIEFKDGLTGVVEKVNENSV 48 (81)
T ss_pred HHHHHhhhhh-hceee---EeeeeeccceEEEcccceeeeeeecCCcE
Confidence 4556665555 44443 3456789999999 789999999875443
No 59
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=37.78 E-value=74 Score=34.84 Aligned_cols=26 Identities=15% Similarity=0.326 Sum_probs=22.6
Q ss_pred HHHHHHHHhhhhccccccHHHHHHHHH
Q 008622 284 VKYMLKLFVGAARSGKINKSDFKKWVI 310 (559)
Q Consensus 284 a~~af~lfd~~~~~g~Is~~~~~~~v~ 310 (559)
.+.+|..+|.| ..|.||.+||+.++.
T Consensus 549 LetiF~~iD~D-~SG~isldEF~~a~~ 574 (631)
T KOG0377|consen 549 LETIFNIIDAD-NSGEISLDEFRTAWK 574 (631)
T ss_pred HHHHHHHhccC-CCCceeHHHHHHHHH
Confidence 67889999988 999999999988774
No 60
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=37.58 E-value=33 Score=26.15 Aligned_cols=26 Identities=12% Similarity=0.207 Sum_probs=22.0
Q ss_pred HHHHHHHhhhhccccccHHHHHHHHHH
Q 008622 285 KYMLKLFVGAARSGKINKSDFKKWVIK 311 (559)
Q Consensus 285 ~~af~lfd~~~~~g~Is~~~~~~~v~~ 311 (559)
+++|..+|.+ .+|.|+.++++..+.+
T Consensus 2 ~~~F~~~D~~-~~G~i~~~el~~~l~~ 27 (67)
T cd00052 2 DQIFRSLDPD-GDGLISGDEARPFLGK 27 (67)
T ss_pred hHHHHHhCCC-CCCcCcHHHHHHHHHH
Confidence 4678999988 8999999999888754
No 61
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=37.17 E-value=32 Score=27.92 Aligned_cols=33 Identities=12% Similarity=0.294 Sum_probs=24.7
Q ss_pred HHhcccccCCCccceeHhHHHhhcCChHHHHHHHHH
Q 008622 255 KIIANIGSDPQSEFIEKDRLLEFLQNERHVKYMLKL 290 (559)
Q Consensus 255 ~if~~~~~~~g~~~i~~~dl~~~~~~~e~a~~af~l 290 (559)
.-|+.++ .|+.||+.+||.+.++.++ |+-+..-
T Consensus 10 ~aFr~lA--~~KpyVT~~dLr~~l~pe~-aey~~~~ 42 (69)
T PF08726_consen 10 EAFRALA--GGKPYVTEEDLRRSLTPEQ-AEYCISR 42 (69)
T ss_dssp HHHHHHC--TSSSCEEHHHHHHHS-CCC-HHHHHCC
T ss_pred HHHHHHH--cCCCcccHHHHHHHcCcHH-HHHHHHH
Confidence 3466665 5999999999999999888 7665543
No 62
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=36.24 E-value=42 Score=28.43 Aligned_cols=27 Identities=7% Similarity=0.105 Sum_probs=24.7
Q ss_pred HHHHHHHHhh-hhccccccHHHHHHHHHH
Q 008622 284 VKYMLKLFVG-AARSGKINKSDFKKWVIK 311 (559)
Q Consensus 284 a~~af~lfd~-~~~~g~Is~~~~~~~v~~ 311 (559)
..++|..||+ + ++|.|+.+|++..+.+
T Consensus 10 l~~~F~~fd~~~-~~g~i~~~ELk~ll~~ 37 (89)
T cd05022 10 LVSNFHKASVKG-GKESLTASEFQELLTQ 37 (89)
T ss_pred HHHHHHHHhCCC-CCCeECHHHHHHHHHH
Confidence 6889999999 7 9999999999998876
No 63
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=35.11 E-value=58 Score=27.38 Aligned_cols=27 Identities=15% Similarity=0.367 Sum_probs=23.1
Q ss_pred HHHHHHHHhh-hhc-cccccHHHHHHHHHH
Q 008622 284 VKYMLKLFVG-AAR-SGKINKSDFKKWVIK 311 (559)
Q Consensus 284 a~~af~lfd~-~~~-~g~Is~~~~~~~v~~ 311 (559)
..++|..||. + + +|.|+.++++..+..
T Consensus 10 l~~~F~~~D~~d-g~dG~Is~~El~~~l~~ 38 (94)
T cd05031 10 LILTFHRYAGKD-GDKNTLSRKELKKLMEK 38 (94)
T ss_pred HHHHHHHHhccC-CCCCeECHHHHHHHHHH
Confidence 7889999997 6 6 699999999987764
No 64
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=34.27 E-value=1.2e+02 Score=26.96 Aligned_cols=38 Identities=16% Similarity=0.101 Sum_probs=26.4
Q ss_pred CCcCCCCEEEE-CCeEEEEEEEeeEEEEEEecCCcEEEE
Q 008622 393 HPFDVGDRCII-DGVQMVVDEMNILTTIFLRYDNERIYY 430 (559)
Q Consensus 393 ~PFdVGDrI~I-~g~~g~VeeI~Ll~T~f~~~dg~~V~I 430 (559)
...++||+|.. +|..|+|.+|+=-+-++...+|..+.+
T Consensus 37 ~~Lk~GD~VvT~gGi~G~V~~I~d~~v~leia~gv~i~~ 75 (109)
T PRK05886 37 ESLQPGDRVHTTSGLQATIVGITDDTVDLEIAPGVVTTW 75 (109)
T ss_pred HhcCCCCEEEECCCeEEEEEEEeCCEEEEEECCCeEEEE
Confidence 45689999976 789999999985444444445555543
No 65
>PRK12281 rplX 50S ribosomal protein L24; Reviewed
Probab=33.71 E-value=53 Score=27.10 Aligned_cols=22 Identities=18% Similarity=0.071 Sum_probs=19.0
Q ss_pred CcCCCCEEEE-----CCeEEEEEEEee
Q 008622 394 PFDVGDRCII-----DGVQMVVDEMNI 415 (559)
Q Consensus 394 PFdVGDrI~I-----~g~~g~VeeI~L 415 (559)
+++.||+|.| -|..|.|.++..
T Consensus 6 ~I~kGD~V~Vi~G~dKGK~G~V~~V~~ 32 (76)
T PRK12281 6 KVKKGDMVKVIAGDDKGKTGKVLAVLP 32 (76)
T ss_pred cccCCCEEEEeEcCCCCcEEEEEEEEc
Confidence 7899999999 378899999865
No 66
>PF06107 DUF951: Bacterial protein of unknown function (DUF951); InterPro: IPR009296 This family consists of several short hypothetical bacterial proteins of unknown function.
Probab=33.16 E-value=1.3e+02 Score=23.58 Aligned_cols=41 Identities=17% Similarity=0.169 Sum_probs=29.9
Q ss_pred cCCCCEEEE------CCeEEEEEEEeeEEEEEEecCCcEEEEeCCcc
Q 008622 395 FDVGDRCII------DGVQMVVDEMNILTTIFLRYDNERIYYPNSVL 435 (559)
Q Consensus 395 FdVGDrI~I------~g~~g~VeeI~Ll~T~f~~~dg~~V~IPNs~L 435 (559)
|++||.|+. ++....|.++|-=.-.=-.--|+.|.+|-+.+
T Consensus 2 ~~vgDiV~mKK~HPCG~~~Wei~R~GaDikikC~gCg~~imlpR~~f 48 (57)
T PF06107_consen 2 YEVGDIVEMKKPHPCGSNEWEIIRIGADIKIKCLGCGRQIMLPRSKF 48 (57)
T ss_pred ccCCCEEEEcCCCCCCCCEEEEEEccCcEEEEECCCCCEEEEeHHHH
Confidence 789999999 56788998887644333344578888887655
No 67
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=32.63 E-value=59 Score=39.56 Aligned_cols=43 Identities=14% Similarity=0.268 Sum_probs=32.3
Q ss_pred CCcCCCCEEEE----------CCeEEEEEEEeeEEEEEEecCCcEEEEeCCcc
Q 008622 393 HPFDVGDRCII----------DGVQMVVDEMNILTTIFLRYDNERIYYPNSVL 435 (559)
Q Consensus 393 ~PFdVGDrI~I----------~g~~g~VeeI~Ll~T~f~~~dg~~V~IPNs~L 435 (559)
++|.+||+|.. ||..|+|++|+=-.-+++..||+.|.+|...+
T Consensus 599 r~~~vGDrVm~~rNd~~lgV~NGd~GtV~~I~~~~i~V~~d~gr~V~~~~~~~ 651 (988)
T PRK13889 599 RSFASGDRVMFLQNERGLGVKNGTLGTIEQVSAQSMSVRLDDGRSVAFDLKDY 651 (988)
T ss_pred ccccCCCEEEEeecCCcCCEeCCCeEEEEEecCCeEEEEECCCeEEEecHHHc
Confidence 57999999987 67889999997655455555777787775443
No 68
>COG2139 RPL21A Ribosomal protein L21E [Translation, ribosomal structure and biogenesis]
Probab=32.51 E-value=64 Score=27.88 Aligned_cols=35 Identities=26% Similarity=0.296 Sum_probs=25.4
Q ss_pred cCCcCCCCEEEEC---------------CeEEEEEEEeeEEEEEEecCCc
Q 008622 392 THPFDVGDRCIID---------------GVQMVVDEMNILTTIFLRYDNE 426 (559)
Q Consensus 392 ~~PFdVGDrI~I~---------------g~~g~VeeI~Ll~T~f~~~dg~ 426 (559)
..-|++||.|.|+ |..|+|....=.+-.+.-.||.
T Consensus 30 l~ey~~Gd~V~I~IdpSv~kGmPh~rf~G~TG~Vvg~~g~ay~V~v~~G~ 79 (98)
T COG2139 30 LQEYKVGDKVHIDIDPSVHKGMPHPRFQGKTGTVVGVRGRAYKVEVYDGN 79 (98)
T ss_pred HhhccCCCEEEEEeCcccccCCCCccccCcceEEEeccCCEEEEEEecCC
Confidence 3579999999983 4679998877766555554554
No 69
>PRK00004 rplX 50S ribosomal protein L24; Reviewed
Probab=32.07 E-value=89 Score=27.41 Aligned_cols=23 Identities=22% Similarity=0.211 Sum_probs=19.3
Q ss_pred CCcCCCCEEEE-----CCeEEEEEEEee
Q 008622 393 HPFDVGDRCII-----DGVQMVVDEMNI 415 (559)
Q Consensus 393 ~PFdVGDrI~I-----~g~~g~VeeI~L 415 (559)
-++..||+|.| .|..|.|.++.-
T Consensus 3 ~~i~kGD~V~Vi~G~dKGk~G~V~~V~~ 30 (105)
T PRK00004 3 MKIKKGDTVIVIAGKDKGKRGKVLKVLP 30 (105)
T ss_pred CcccCCCEEEEeEcCCCCcEEEEEEEEc
Confidence 37899999999 478899999864
No 70
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=31.51 E-value=73 Score=37.60 Aligned_cols=43 Identities=21% Similarity=0.332 Sum_probs=32.1
Q ss_pred CCcCCCCEEEE----------CCeEEEEEEEeeEEEEEEecCCcEEEEeCCcc
Q 008622 393 HPFDVGDRCII----------DGVQMVVDEMNILTTIFLRYDNERIYYPNSVL 435 (559)
Q Consensus 393 ~PFdVGDrI~I----------~g~~g~VeeI~Ll~T~f~~~dg~~V~IPNs~L 435 (559)
..|.+||+|.. ||..|+|.+|+=-..+++..+|+.+.+|...+
T Consensus 606 ~~~~~GDrV~~~~N~~~~gv~NGd~g~V~~i~~~~i~v~~~~G~~v~~~~~~~ 658 (744)
T TIGR02768 606 RKFAAGDRIVFLENNRDLGVKNGMLGTVEEIEDGRLVVQLDSGELVIIPQAEY 658 (744)
T ss_pred ceecCCCEEEEEecccccCCcCCCEEEEEEecCCeEEEEECCCCEEEECHHHh
Confidence 58999999988 57889999987544455555677788875543
No 71
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=31.43 E-value=57 Score=26.81 Aligned_cols=28 Identities=11% Similarity=0.309 Sum_probs=24.3
Q ss_pred HHHHHHHHHhh--hhccccccHHHHHHHHHH
Q 008622 283 HVKYMLKLFVG--AARSGKINKSDFKKWVIK 311 (559)
Q Consensus 283 ~a~~af~lfd~--~~~~g~Is~~~~~~~v~~ 311 (559)
++.++|..||. + ++|.|+.+++...+..
T Consensus 9 ~l~~~F~~~D~~~~-~~G~Is~~el~~~l~~ 38 (88)
T cd00213 9 TIIDVFHKYSGKEG-DKDTLSKKELKELLET 38 (88)
T ss_pred HHHHHHHHHhhccC-CCCcCcHHHHHHHHHH
Confidence 37889999999 6 9999999999987754
No 72
>PF02559 CarD_CdnL_TRCF: CarD-like/TRCF domain; InterPro: IPR003711 The bacterium Myxococcus xanthus responds to blue light by producing carotenoids. It also responds to starvation conditions by developing fruiting bodies, where the cells differentiate into myxospores. Each response entails the transcriptional activation of a separate set of genes. A single gene, carD, is required for the activation of both light- and starvation-inducible genes []. The predicted protein contains four repeats of a DNA-binding domain present in mammalian high mobility group I(Y) proteins and other nuclear proteins from animals and plants. Other peptide stretches on CarD also resemble functional domains typical of eukaryotic transcription factors, including a very acidic region and a leucine zipper. High mobility group yI(Y) proteins are known to bind the minor groove of A+T-rich DNA [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3MLQ_H 2EYQ_A.
Probab=31.35 E-value=1.4e+02 Score=25.19 Aligned_cols=43 Identities=16% Similarity=0.303 Sum_probs=27.1
Q ss_pred cCCCCEEEECCe-EEEEEEEeeEE--------EEEEecCCcEEEEeCCcccC
Q 008622 395 FDVGDRCIIDGV-QMVVDEMNILT--------TIFLRYDNERIYYPNSVLAT 437 (559)
Q Consensus 395 FdVGDrI~I~g~-~g~VeeI~Ll~--------T~f~~~dg~~V~IPNs~L~s 437 (559)
|++||.|.=.+. -|+|++|.-.. -++.-.+|.++++|=..+..
T Consensus 2 f~~GD~VVh~~~Gv~~i~~i~~~~~~~~~~~yy~L~~~~~~~i~vPv~~~~~ 53 (98)
T PF02559_consen 2 FKIGDYVVHPNHGVGRIEGIEEIEFGGEKQEYYVLEYADDDTIYVPVDNADK 53 (98)
T ss_dssp --TTSEEEETTTEEEEEEEEEEEECTTEEEEEEEEEECCCEEEEEECCCGGG
T ss_pred CCCCCEEEECCCceEEEEEEEEEeeCCeeEEEEEEEECCCCEEEEEcCChhh
Confidence 789999988653 46666655443 34555566688898776543
No 73
>CHL00141 rpl24 ribosomal protein L24; Validated
Probab=30.25 E-value=65 Score=27.06 Aligned_cols=22 Identities=23% Similarity=0.182 Sum_probs=18.8
Q ss_pred CcCCCCEEEE-----CCeEEEEEEEee
Q 008622 394 PFDVGDRCII-----DGVQMVVDEMNI 415 (559)
Q Consensus 394 PFdVGDrI~I-----~g~~g~VeeI~L 415 (559)
++..||+|.| -|..|.|.++.-
T Consensus 8 ~I~~GD~V~Vi~G~dKGK~G~V~~V~~ 34 (83)
T CHL00141 8 HVKIGDTVKIISGSDKGKIGEVLKIIK 34 (83)
T ss_pred cccCCCEEEEeEcCCCCcEEEEEEEEc
Confidence 6889999998 478899999865
No 74
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=30.20 E-value=2e+02 Score=24.62 Aligned_cols=61 Identities=13% Similarity=0.276 Sum_probs=42.0
Q ss_pred HHHHHHHHhcccccCCCccceeHhHHHhhc--------C---ChHHHHHHHHHHhhhhccccccHHHHHHHHHHH
Q 008622 249 AKHLADKIIANIGSDPQSEFIEKDRLLEFL--------Q---NERHVKYMLKLFVGAARSGKINKSDFKKWVIKV 312 (559)
Q Consensus 249 a~~lAr~if~~~~~~~g~~~i~~~dl~~~~--------~---~~e~a~~af~lfd~~~~~g~Is~~~~~~~v~~i 312 (559)
|-..--.+|+..+. +..+++..+|...+ + +++..+++|.-+|.+ .+|.++.+||..-+..+
T Consensus 6 ai~~lI~~FhkYaG--~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n-~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 6 SMEKMMLTFHKFAG--EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDC-RDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHHHcC--CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCC-CCCcCcHHHHHHHHHHH
Confidence 33344456777774 34467777776554 2 234478899999988 99999999988776554
No 75
>COG5117 NOC3 Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis / Intracellular trafficking and secretion]
Probab=29.94 E-value=8.2e+02 Score=27.30 Aligned_cols=131 Identities=15% Similarity=0.181 Sum_probs=73.5
Q ss_pred HHhcccccCCCccceeHhHHHhhcC------ChHHHHHHHHHHhhhhccccccHHH------HHHHHHHHHHhhHHHHhh
Q 008622 255 KIIANIGSDPQSEFIEKDRLLEFLQ------NERHVKYMLKLFVGAARSGKINKSD------FKKWVIKVYKDRETLKRS 322 (559)
Q Consensus 255 ~if~~~~~~~g~~~i~~~dl~~~~~------~~e~a~~af~lfd~~~~~g~Is~~~------~~~~v~~i~~eRk~l~~s 322 (559)
+|+..+-+ .+.+..++++...+= .++-+.++.. .|...++.+ +.....++++||+.+..-
T Consensus 313 ~i~~~l~k--~rN~~vle~vld~~ls~n~L~D~~~~~k~w~------~n~~~~k~~KKd~~hlsKK~RK~~KE~~~I~~E 384 (657)
T COG5117 313 VIDQMLDK--ERNPLVLEYVLDIPLSDNSLRDEEKARKYWE------ANKPVSKREKKDIFHLSKKLRKIEKERLRIQSE 384 (657)
T ss_pred hHHHHHHh--hhCchhHHHHHhccchhhhhhhhhhhHHhhh------cCCcchhhhhcchhhhhHHHHHHHHHHHHHHHH
Confidence 45555554 567777787776542 2222333322 133344333 666789999999999999
Q ss_pred ccChhHHHHHHHHHHHHHHH-HHHHHHHHHHhCchhHHHHHHHHHHHHHH---HH-HhhhhHhHHHHHHHHHhhcCCcC
Q 008622 323 LNDAKTAIEELNRILSAIVI-VVIIIVWLLVMGLLTYKIIALVTSQLVLL---AF-MFGNTARTCFEAIIFVFVTHPFD 396 (559)
Q Consensus 323 l~d~~t~v~~L~~il~~iv~-ii~iii~L~ilgi~~~~lla~~g~~~lal---~f-a~q~tl~n~f~s~IfIfv~~PFd 396 (559)
|+|.++++...++-=+--=+ =++..+++.++-.+-..+ +|.+.-|+ += +=-+.++++++..=++....|+|
T Consensus 385 mr~ae~i~~a~e~eknqseIlkiif~~Yf~vLk~~~k~l---ig~vleGl~k~~~~~n~eflGD~Levl~eL~~d~~~d 460 (657)
T COG5117 385 MRDAEDIEEAIEEEKNQSEILKIIFRLYFMVLKGDRKDL---IGYVLEGLVKYRKIINPEFLGDLLEVLYELLNDNPLD 460 (657)
T ss_pred hhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchHHH---HHHHHHHHHHHHhhcCHHHHhHHHHHHHHHHcCCchh
Confidence 99999999888765432211 122233444443333322 23322222 11 11245667777777777777775
No 76
>cd04461 S1_Rrp5_repeat_hs8_sc7 S1_Rrp5_repeat_hs8_sc7: Rrp5 Homo sapiens S1 repeat 8 (hs8) and Saccharomyces cerevisiae S1 repeat 7 (sc7)-like domains. Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in S. cerevisiae Rrp5 and 14 S1 repeats in H. sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 8 and S. cerevisiae S1 repeat 7. Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=29.02 E-value=1.6e+02 Score=23.87 Aligned_cols=45 Identities=9% Similarity=-0.023 Sum_probs=31.3
Q ss_pred cCCCCEEEECCeEEEEEEEeeEEEEEEecCCcEEEEeCCcccCCcEEecc
Q 008622 395 FDVGDRCIIDGVQMVVDEMNILTTIFLRYDNERIYYPNSVLATKPIGNFF 444 (559)
Q Consensus 395 FdVGDrI~I~g~~g~VeeI~Ll~T~f~~~dg~~V~IPNs~L~s~~I~N~s 444 (559)
+++||.+ .|.|.++.=.--.+.-.+|..-.+|.+.+....+.+..
T Consensus 12 ~~~G~i~-----~g~V~~v~~~G~fv~l~~~~~g~v~~~el~~~~~~~~~ 56 (83)
T cd04461 12 LKPGMVV-----HGYVRNITPYGVFVEFLGGLTGLAPKSYISDEFVTDPS 56 (83)
T ss_pred CCCCCEE-----EEEEEEEeeceEEEEcCCCCEEEEEHHHCCcccccCHH
Confidence 6777766 57788777655555545677778999998876665543
No 77
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=28.59 E-value=1.6e+02 Score=27.38 Aligned_cols=43 Identities=9% Similarity=0.053 Sum_probs=28.2
Q ss_pred CCcCCCCEEEE-----CCeEEEEEEEeeEE-EE-EEec-CCcE--EEEeCCcc
Q 008622 393 HPFDVGDRCII-----DGVQMVVDEMNILT-TI-FLRY-DNER--IYYPNSVL 435 (559)
Q Consensus 393 ~PFdVGDrI~I-----~g~~g~VeeI~Ll~-T~-f~~~-dg~~--V~IPNs~L 435 (559)
.+|++||+|+| .|..|.|.+++-.. .. +.-. .... +.+|++.+
T Consensus 93 ~~~~~G~~V~I~~Gpf~g~~g~V~~vd~~k~~v~v~ll~~~~~~pv~v~~~~~ 145 (153)
T PRK08559 93 EGIKEGDIVELIAGPFKGEKARVVRVDESKEEVTVELLEAAVPIPVTVRGDQV 145 (153)
T ss_pred cCCCCCCEEEEeccCCCCceEEEEEEcCCCCEEEEEEECCcceeeEEEeccEE
Confidence 57999999999 35789999986321 11 1111 1333 77888776
No 78
>PF03526 Microcin: Colicin E1 (microcin) immunity protein; InterPro: IPR003061 The structural and functional relationships among independently cloned segments of the plasmid ColE1 region that regulates and codes for colicin E1 (cea), immunity (imm) and the mitomycin C-induced lethality function (lys) have been analysed []. A model for the structure and expression of the colicin E1 operon has been proposed in which the cea and lys genes are expressed from a single inducible promoter that is controlled by the lexA repressor in response to the SOS system of Escherichia coli []. The imm gene lies between the cea and lys genes and is expressed by transcription in the opposite direction from a promoter located within the lys gene []. This arrangement indicates that the transcriptional units for all three genes overlap. It is proposed that the formation of anti-sense RNA may be an important element in the coordinate regulation of gene expression in this system []. Hydropathy analysis of the imm gene products suggests that they have hydrophobic domains characteristic of membrane-associated proteins []. The microcin E1 immunity protein is able to protect a cell that harbours the plasmid ColE1 encoding colicin E1 against colicin E1; it is thus essential both for autonomous replication and colicin E1 immunity []. ; GO: 0015643 toxin binding, 0030153 bacteriocin immunity
Probab=27.78 E-value=83 Score=24.22 Aligned_cols=35 Identities=17% Similarity=0.425 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcchhhHHHH
Q 008622 128 RTLACFLAGAALWLVKTFSVKLIGVSFQCKRFFDR 162 (559)
Q Consensus 128 ~~l~~~~~~~~~~l~~~~~v~~ia~~fh~~~~~~r 162 (559)
+-|.++.++++++=.-|-.|+-+|..|-.+.|..+
T Consensus 8 ~~l~~~iiStIl~PfSk~aIE~ialkft~keFw~~ 42 (55)
T PF03526_consen 8 KMLYLAIISTILFPFSKWAIEKIALKFTKKEFWNK 42 (55)
T ss_pred chhHHHHHHHhhhhhHHHHHHHHHHHhccHHHHhc
Confidence 45667778888877777788888888888877764
No 79
>PRK11465 putative mechanosensitive channel protein; Provisional
Probab=27.72 E-value=2.6e+02 Score=33.07 Aligned_cols=60 Identities=20% Similarity=0.207 Sum_probs=38.1
Q ss_pred eecchhhHHHHHHHHHHHHHHHHHHcCCCCcccCccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008622 81 VYGLRTSISVFIWLTLVLLVWILLFDHGYGVKRSSRATSKILHHIITRTLACFLAGAALWLVKTF 145 (559)
Q Consensus 81 v~~l~~~~~~~~w~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~l~~~~ 145 (559)
+..+| |+..++|+...+.+|..+--.. .-.+ ....+.+.. +.+++..++++.+.|.+-+.
T Consensus 427 l~~lr-~l~~~~~vl~ll~a~~~l~l~~--~~~~-~~g~~~i~~-l~~i~iil~i~~v~w~l~~~ 486 (741)
T PRK11465 427 LKTAR-ILTVCVAVMLLLNAWGLFDFWN--WLQN-GAGEKTVDI-LIRIALILFFSAVGWTVLAS 486 (741)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHhcchHh--hhcc-chHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 55566 8889999999999998542111 0001 122344554 77788888888888877553
No 80
>PF14023 DUF4239: Protein of unknown function (DUF4239)
Probab=27.65 E-value=5.6e+02 Score=24.67 Aligned_cols=7 Identities=29% Similarity=0.648 Sum_probs=5.3
Q ss_pred hhcCCcC
Q 008622 390 FVTHPFD 396 (559)
Q Consensus 390 fv~~PFd 396 (559)
-.+|||.
T Consensus 189 ~ld~Pf~ 195 (209)
T PF14023_consen 189 DLDNPFS 195 (209)
T ss_pred HhcCCCC
Confidence 4689985
No 81
>PF03829 PTSIIA_gutA: PTS system glucitol/sorbitol-specific IIA component; InterPro: IPR004716 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families: It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. This family consists only of glucitol-specific transporters, and occur both in Gram-negative and Gram-positive bacteria. The system in Escherichia coli consists of a IIA protein, and a IIBC protein. This family is specific for the IIA component.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2F9H_A.
Probab=27.54 E-value=71 Score=28.61 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=16.3
Q ss_pred hcCCcCCCCEEEECCeEEEEEEEe
Q 008622 391 VTHPFDVGDRCIIDGVQMVVDEMN 414 (559)
Q Consensus 391 v~~PFdVGDrI~I~g~~g~VeeI~ 414 (559)
......+||++.||+..+.|..+|
T Consensus 48 ~~~~i~~Gd~l~i~~~~y~ItaVG 71 (117)
T PF03829_consen 48 LKGDIKPGDTLIIGGQEYTITAVG 71 (117)
T ss_dssp GG----TT-EEEETTEEEEEEEE-
T ss_pred ccCCcCCCCEEEECCeEEEEEEEh
Confidence 356789999999999999999886
No 82
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=26.55 E-value=90 Score=29.50 Aligned_cols=47 Identities=19% Similarity=0.257 Sum_probs=35.5
Q ss_pred CccceeHhHHHhhcC-------ChHHHHHHHHHHhhhhccccccHHHHHHHHHHH
Q 008622 265 QSEFIEKDRLLEFLQ-------NERHVKYMLKLFVGAARSGKINKSDFKKWVIKV 312 (559)
Q Consensus 265 g~~~i~~~dl~~~~~-------~~e~a~~af~lfd~~~~~g~Is~~~~~~~v~~i 312 (559)
+..+|++.-|+.-|+ +++....||..||.. +.|.|..+.++.++...
T Consensus 77 a~gPINft~FLTmfGekL~gtdpe~~I~~AF~~FD~~-~~G~I~~d~lre~Ltt~ 130 (171)
T KOG0031|consen 77 APGPINFTVFLTMFGEKLNGTDPEEVILNAFKTFDDE-GSGKIDEDYLRELLTTM 130 (171)
T ss_pred CCCCeeHHHHHHHHHHHhcCCCHHHHHHHHHHhcCcc-CCCccCHHHHHHHHHHh
Confidence 344677777766653 344478999999977 89999999999888764
No 83
>PRK05609 nusG transcription antitermination protein NusG; Validated
Probab=26.15 E-value=1.6e+02 Score=27.76 Aligned_cols=42 Identities=14% Similarity=0.180 Sum_probs=29.7
Q ss_pred cCCcCCCCEEEEC-----CeEEEEEEEe---eEEEEEEecCCcE--EEEeCC
Q 008622 392 THPFDVGDRCIID-----GVQMVVDEMN---ILTTIFLRYDNER--IYYPNS 433 (559)
Q Consensus 392 ~~PFdVGDrI~I~-----g~~g~VeeI~---Ll~T~f~~~dg~~--V~IPNs 433 (559)
..+|++||+|.|. |.+|.|.+++ =+.++..+.=|+. +-++..
T Consensus 124 ~~~~~~Gd~VrI~~GPf~G~~g~v~~i~~~~~r~~v~l~~~G~~~~v~l~~~ 175 (181)
T PRK05609 124 KVDFEVGEMVRVIDGPFADFNGTVEEVDYEKSKLKVLVSIFGRETPVELEFS 175 (181)
T ss_pred ccCCCCCCEEEEeccCCCCCEEEEEEEeCCCCEEEEEEEECCCceEEEEchH
Confidence 4679999999993 6899999986 2566666666654 344443
No 84
>PF00575 S1: S1 RNA binding domain; InterPro: IPR003029 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S1 domain was originally identified in ribosomal protein S1 but is found in a large number of RNA-associated proteins. The structure of the S1 RNA-binding domain from the Escherichia coli polynucleotide phosphorylase has been determined using NMR methods and consists of a five-stranded antiparallel beta barrel. Conserved residues on one face of the barrel and adjacent loops form the putative RNA-binding site []. The structure of the S1 domain is very similar to that of cold shock proteins. This suggests that they may both be derived from an ancient nucleic acid-binding protein []. More information about these proteins can be found at Protein of the Month: RNA Exosomes []. This entry does not include translation initiation factor IF-1 S1 domains.; GO: 0003723 RNA binding; PDB: 3L7Z_F 2JE6_I 2JEA_I 2JEB_I 1E3P_A 2Y0S_E 1WI5_A 2BH8_A 2CQO_A 2EQS_A ....
Probab=26.12 E-value=2.1e+02 Score=22.39 Aligned_cols=57 Identities=16% Similarity=0.132 Sum_probs=36.3
Q ss_pred cCCCCEEEECCeEEEEEEEeeEEEEEEecCCcEEEEeCCcccCCcEEeccCCCCceeEEEEEE
Q 008622 395 FDVGDRCIIDGVQMVVDEMNILTTIFLRYDNERIYYPNSVLATKPIGNFFRSPPEMGDSVEFA 457 (559)
Q Consensus 395 FdVGDrI~I~g~~g~VeeI~Ll~T~f~~~dg~~V~IPNs~L~s~~I~N~sRs~~~~~~~i~~~ 457 (559)
+++||.+ .|+|.++.=..-.+.-.+|..-.+|.+.+....+.+.+..- .....+.+.
T Consensus 2 ~~~G~iv-----~g~V~~v~~~g~~V~l~~~~~g~ip~~~l~~~~~~~~~~~~-~~G~~v~v~ 58 (74)
T PF00575_consen 2 LKEGDIV-----EGKVTSVEDFGVFVDLGNGIEGFIPISELSDDRIDDPSEVY-KIGQTVRVK 58 (74)
T ss_dssp SSTTSEE-----EEEEEEEETTEEEEEESTSSEEEEEGGGSSSSEESSSHGTC-ETTCEEEEE
T ss_pred CCCCCEE-----EEEEEEEECCEEEEEECCcEEEEEEeehhcCcccccccccc-CCCCEEEEE
Confidence 3556665 68999888744444433488889999999987555544443 333444433
No 85
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=25.88 E-value=76 Score=26.65 Aligned_cols=27 Identities=15% Similarity=0.282 Sum_probs=23.4
Q ss_pred HHHHHHHHh-hhhccc-cccHHHHHHHHHH
Q 008622 284 VKYMLKLFV-GAARSG-KINKSDFKKWVIK 311 (559)
Q Consensus 284 a~~af~lfd-~~~~~g-~Is~~~~~~~v~~ 311 (559)
..++|..|| .+ ++| .|+.++++..+..
T Consensus 10 l~~aF~~fD~~d-gdG~~I~~~eL~~ll~~ 38 (88)
T cd05027 10 LIDVFHQYSGRE-GDKHKLKKSELKELINN 38 (88)
T ss_pred HHHHHHHhcccC-CCcCEECHHHHHHHHHH
Confidence 789999998 57 899 5999999988865
No 86
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=25.80 E-value=1e+02 Score=31.79 Aligned_cols=32 Identities=16% Similarity=0.045 Sum_probs=27.2
Q ss_pred CCcCCCCEEEEC---CeEEEEEEEeeEEEEEEecC
Q 008622 393 HPFDVGDRCIID---GVQMVVDEMNILTTIFLRYD 424 (559)
Q Consensus 393 ~PFdVGDrI~I~---g~~g~VeeI~Ll~T~f~~~d 424 (559)
.+.-|||||.++ +.+|.|++|--+.+.+.+.+
T Consensus 33 ~~~~vGD~V~~~~~~~~~~~i~~i~~R~~~l~R~~ 67 (287)
T cd01854 33 IKPVVGDWVEVEPDDDGEGVIVRVLPRKNLLSRPA 67 (287)
T ss_pred CCccCCCEEEEEecCCCcEEEEEEECCCceEEccC
Confidence 468899999985 35699999999999998876
No 87
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=25.33 E-value=1.9e+02 Score=25.76 Aligned_cols=42 Identities=26% Similarity=0.413 Sum_probs=27.0
Q ss_pred CcCCCCEEE-ECCeEEEEEEEeeE-EEEEEecCCcEEEEeCCcc
Q 008622 394 PFDVGDRCI-IDGVQMVVDEMNIL-TTIFLRYDNERIYYPNSVL 435 (559)
Q Consensus 394 PFdVGDrI~-I~g~~g~VeeI~Ll-~T~f~~~dg~~V~IPNs~L 435 (559)
..++||+|. ++|..|+|.+|+-- .|+....+|..+.+--+.+
T Consensus 36 sLk~GD~VvT~GGi~G~V~~I~~~~~~v~le~~gv~i~v~r~AI 79 (113)
T PRK06531 36 AIQKGDEVVTIGGLYGTVDEVDTEAKTIVLDVDGVYLTFELAAI 79 (113)
T ss_pred hcCCCCEEEECCCcEEEEEEEecCCCEEEEEECCEEEEEEhhHh
Confidence 457999997 58899999999852 2332223666665544433
No 88
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=25.19 E-value=1.5e+02 Score=24.03 Aligned_cols=51 Identities=18% Similarity=0.359 Sum_probs=37.0
Q ss_pred CCccceeHhHHH----hhcCChHHHHHHHHHHhhhhccccccHHHHHHHHHHHHHhh
Q 008622 264 PQSEFIEKDRLL----EFLQNERHVKYMLKLFVGAARSGKINKSDFKKWVIKVYKDR 316 (559)
Q Consensus 264 ~g~~~i~~~dl~----~~~~~~e~a~~af~lfd~~~~~g~Is~~~~~~~v~~i~~eR 316 (559)
|....+.+..|. ++++.++ ...+...++.. ..++|++++|.+.+..+.-++
T Consensus 4 P~sp~~~F~~L~~~l~~~l~~~~-~~~l~~~Y~~~-k~~kIsR~~fvr~lR~IVGD~ 58 (70)
T PF12174_consen 4 PTSPWMPFPMLFSALSKHLPPSK-MDLLQKHYEEF-KKKKISREEFVRKLRQIVGDQ 58 (70)
T ss_pred CCCCcccHHHHHHHHHHHCCHHH-HHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHH
Confidence 555666666554 4556665 77777777745 799999999999998887654
No 89
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=24.68 E-value=58 Score=30.44 Aligned_cols=59 Identities=15% Similarity=0.235 Sum_probs=42.6
Q ss_pred HHHHhcccccCCCccceeHhHHHhhcC-------ChHHHHHHHHHHhhhhccccccHHHHHHHHHHHH
Q 008622 253 ADKIIANIGSDPQSEFIEKDRLLEFLQ-------NERHVKYMLKLFVGAARSGKINKSDFKKWVIKVY 313 (559)
Q Consensus 253 Ar~if~~~~~~~g~~~i~~~dl~~~~~-------~~e~a~~af~lfd~~~~~g~Is~~~~~~~v~~i~ 313 (559)
-+||-.-|.. .|+..++++||..-|+ .+=.|.-||.+.|-+ +++.|-.+++...+.+.-
T Consensus 73 k~ri~e~FSe-DG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd-~D~~i~~~DL~~~l~~lT 138 (189)
T KOG0038|consen 73 KRRICEVFSE-DGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFD-GDEFIGHDDLEKTLTSLT 138 (189)
T ss_pred HHHHHHHhcc-CCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecC-CCCcccHHHHHHHHHHHh
Confidence 4566666777 7888899999887653 222377788888877 778888888887776553
No 90
>PRK03999 translation initiation factor IF-5A; Provisional
Probab=24.36 E-value=2.1e+02 Score=26.02 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=19.5
Q ss_pred CcCCCCEEEECCeEEEEEEEee
Q 008622 394 PFDVGDRCIIDGVQMVVDEMNI 415 (559)
Q Consensus 394 PFdVGDrI~I~g~~g~VeeI~L 415 (559)
-++.||.|+++|..+.|.+++-
T Consensus 10 ~lrkG~~i~~~g~p~~V~~~~~ 31 (129)
T PRK03999 10 ELKEGSYVVIDGEPCKIVEISK 31 (129)
T ss_pred HccCCCEEEECCEEEEEEEEEe
Confidence 3688999999999999999863
No 91
>PF01157 Ribosomal_L21e: Ribosomal protein L21e; InterPro: IPR001147 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L21E family contains proteins from a number of eukaryotic and archaebacterial organisms which include; mammalian L2, Entamoeba histolytica L21, Caenorhabditis elegans L21 (C14B9.7), Saccharomyces cerevisiae (Baker's yeast) L21E (URP1) and Haloarcula marismortui HL31.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZR_U 1S1I_Q 3O58_T 3IZS_U 3O5H_T 1Q82_R 1KQS_P 3CCJ_Q 3CCQ_Q 1VQ5_Q ....
Probab=23.73 E-value=90 Score=27.18 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=12.2
Q ss_pred cCCcCCCCEEEEC---------------CeEEEEEEEe
Q 008622 392 THPFDVGDRCIID---------------GVQMVVDEMN 414 (559)
Q Consensus 392 ~~PFdVGDrI~I~---------------g~~g~VeeI~ 414 (559)
.+.|++||.|.|. |..|+|..++
T Consensus 30 l~~yk~GD~V~I~id~sv~kGmPh~~yHGkTG~V~~v~ 67 (99)
T PF01157_consen 30 LQEYKVGDKVDIKIDPSVHKGMPHKRYHGKTGRVFNVT 67 (99)
T ss_dssp H----TT-EEEE---TTSSSSS--GGGTTEEEEEEEE-
T ss_pred HHHccCCCEEEEEecCccccCCCcceECCCceeEEEeC
Confidence 4889999999994 3578887543
No 92
>TIGR01080 rplX_A_E ribosomal protein L24p/L26e, archaeal/eukaryotic. This model represents the archaeal and eukaryotic branch of the ribosomal protein L24p/L26e family. Bacterial and organellar forms are represented by the related TIGR01079.
Probab=23.68 E-value=1.4e+02 Score=26.70 Aligned_cols=35 Identities=26% Similarity=0.402 Sum_probs=25.2
Q ss_pred CcCCCCEEEE-----CCeEEEEEEEeeEEEEEEecCCcEEEEeCCccc
Q 008622 394 PFDVGDRCII-----DGVQMVVDEMNILTTIFLRYDNERIYYPNSVLA 436 (559)
Q Consensus 394 PFdVGDrI~I-----~g~~g~VeeI~Ll~T~f~~~dg~~V~IPNs~L~ 436 (559)
|++.||.|.| .|.+|.|.+|. .....|++.+-.+.
T Consensus 41 ~IkkGD~V~Vi~Gk~KGk~GkV~~V~--------~~~~~V~Vegvn~~ 80 (114)
T TIGR01080 41 PVRKGDKVRIMRGDFKGHEGKVSKVD--------LKRYRIYVEGVTKE 80 (114)
T ss_pred eeecCCEEEEecCCCCCCEEEEEEEE--------cCCCEEEEcCeEEE
Confidence 8999999998 47899999985 23335666664433
No 93
>PF14658 EF-hand_9: EF-hand domain
Probab=23.66 E-value=1.9e+02 Score=23.28 Aligned_cols=54 Identities=13% Similarity=0.271 Sum_probs=37.6
Q ss_pred hcccccCCCccceeHhHHHhhc-------CChHHHHHHHHHHhhhhccccccHHHHHHHHHH
Q 008622 257 IANIGSDPQSEFIEKDRLLEFL-------QNERHVKYMLKLFVGAARSGKINKSDFKKWVIK 311 (559)
Q Consensus 257 f~~~~~~~g~~~i~~~dl~~~~-------~~~e~a~~af~lfd~~~~~g~Is~~~~~~~v~~ 311 (559)
|.-+-. .....+...+|..|+ |++++.+.....+|++...|.++++.|...+.+
T Consensus 4 F~~fD~-~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 4 FDAFDT-QKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred hhhcCC-cCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 444444 555667777777775 455568888899998833499999988766554
No 94
>PRK01202 glycine cleavage system protein H; Provisional
Probab=23.31 E-value=2.2e+02 Score=25.68 Aligned_cols=63 Identities=22% Similarity=0.311 Sum_probs=44.5
Q ss_pred hhHhHHHHHHHHHhhcCCcCCCCEEEECCeEEEEEEEeeEEEEEEecCCcEEEEeCCcccCCcEEe
Q 008622 377 NTARTCFEAIIFVFVTHPFDVGDRCIIDGVQMVVDEMNILTTIFLRYDNERIYYPNSVLATKPIGN 442 (559)
Q Consensus 377 ~tl~n~f~s~IfIfv~~PFdVGDrI~I~g~~g~VeeI~Ll~T~f~~~dg~~V~IPNs~L~s~~I~N 442 (559)
+.+++.++-+ .+++=| ++||+|+-|..-|.||.....++..--.+|+.+-+-.....+-...|
T Consensus 30 ~~a~~~lG~i--~~v~lp-~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~p~~ln 92 (127)
T PRK01202 30 DHAQEQLGDI--VFVELP-EVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVNEALEDSPELVN 92 (127)
T ss_pred HHHHhhcCCe--eEEEcC-CCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEhHHhhhCcHhhc
Confidence 3444545444 455666 89999999999999999999888777777877766544444444445
No 95
>PF13856 Gifsy-2: ATP-binding sugar transporter from pro-phage; PDB: 2PP6_A.
Probab=23.05 E-value=1e+02 Score=26.23 Aligned_cols=20 Identities=35% Similarity=0.542 Sum_probs=15.4
Q ss_pred cCCCCEEEECCeEEEEEEEe
Q 008622 395 FDVGDRCIIDGVQMVVDEMN 414 (559)
Q Consensus 395 FdVGDrI~I~g~~g~VeeI~ 414 (559)
-+.||.|.+||..++|.+..
T Consensus 66 P~~gd~v~~dG~~y~V~~~~ 85 (95)
T PF13856_consen 66 PRRGDRVVIDGESYTVTRFQ 85 (95)
T ss_dssp --TT-EEEETTEEEEEEEEE
T ss_pred CCCCCEEEECCeEEEEeEEe
Confidence 67999999999999998754
No 96
>PLN02964 phosphatidylserine decarboxylase
Probab=22.40 E-value=1.4e+02 Score=34.55 Aligned_cols=57 Identities=12% Similarity=0.139 Sum_probs=41.0
Q ss_pred HHHHhcccccCCCccceeHhHHHhh----cCChHH---HHHHHHHHhhhhccccccHHHHHHHHHHH
Q 008622 253 ADKIIANIGSDPQSEFIEKDRLLEF----LQNERH---VKYMLKLFVGAARSGKINKSDFKKWVIKV 312 (559)
Q Consensus 253 Ar~if~~~~~~~g~~~i~~~dl~~~----~~~~e~---a~~af~lfd~~~~~g~Is~~~~~~~v~~i 312 (559)
.++.|..+.+ .+...+ +..+.+- .+++++ +.++|..+|.+ ++|.|+.+||...+...
T Consensus 145 lkeaF~lfD~-dgdG~i-Lg~ilrslG~~~pte~e~~fi~~mf~~~D~D-gdG~IdfdEFl~lL~~l 208 (644)
T PLN02964 145 ACESFDLLDP-SSSNKV-VGSIFVSCSIEDPVETERSFARRILAIVDYD-EDGQLSFSEFSDLIKAF 208 (644)
T ss_pred HHHHHHHHCC-CCCCcC-HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCC-CCCeEcHHHHHHHHHHh
Confidence 4666888886 444444 5566553 344443 68999999988 99999999999887654
No 97
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=22.38 E-value=2.3e+02 Score=24.54 Aligned_cols=38 Identities=18% Similarity=0.221 Sum_probs=26.7
Q ss_pred CcCCCCEEEE-CCeEEEEEEEeeEEEEEEecCCcEEEEe
Q 008622 394 PFDVGDRCII-DGVQMVVDEMNILTTIFLRYDNERIYYP 431 (559)
Q Consensus 394 PFdVGDrI~I-~g~~g~VeeI~Ll~T~f~~~dg~~V~IP 431 (559)
..+.||.|.. +|..|+|.+++=-+-++.-.||..+.+-
T Consensus 43 sL~kGD~VvT~gGi~G~V~~v~d~~v~I~l~~~~~i~~~ 81 (97)
T COG1862 43 SLKKGDEVVTIGGIVGTVTKVGDDTVEIELGDGTKIKFE 81 (97)
T ss_pred hccCCCEEEEcCCeEEEEEEEecCcEEEEECCCeEEEEE
Confidence 3579999977 6799999999865544444466665543
No 98
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=22.30 E-value=2.3e+02 Score=33.69 Aligned_cols=44 Identities=16% Similarity=0.045 Sum_probs=33.8
Q ss_pred CCcCCCCEEEECC--eEEEEEEEeeEEEEEEecCCcEEEEeCCccc
Q 008622 393 HPFDVGDRCIIDG--VQMVVDEMNILTTIFLRYDNERIYYPNSVLA 436 (559)
Q Consensus 393 ~PFdVGDrI~I~g--~~g~VeeI~Ll~T~f~~~dg~~V~IPNs~L~ 436 (559)
+++++||+|.+.+ ..|+|.++.=-.......++-++.+|=+.|.
T Consensus 635 ~~~~~Gd~V~v~~~~~~g~v~~i~~~~~~~V~~g~~k~~v~~~~l~ 680 (782)
T PRK00409 635 EELKVGDEVKYLSLGQKGEVLSIPDDKEAIVQAGIMKMKVPLSDLE 680 (782)
T ss_pred cCCCCCCEEEEccCCceEEEEEEcCCCeEEEEECCEEEEEeHHHce
Confidence 6799999999965 8999999951124445567888888888874
No 99
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal. This protein contains a KOW domain, shared by bacterial NusG and the L24p/L26e family of ribosomal proteins. Although called archaeal NusG in several publications, it is the only close homolog of eukaryotic L26e in archaeal genomes, shares an operon with L11 in many genomes, and has been sequenced from purified ribosomes. It is here designated as a ribosomal protein for these reasons.
Probab=22.15 E-value=2e+02 Score=26.32 Aligned_cols=43 Identities=16% Similarity=0.088 Sum_probs=27.0
Q ss_pred CCcCCCCEEEE-----CCeEEEEEEEee---EEEEEEecCCcE--EEEeCCcc
Q 008622 393 HPFDVGDRCII-----DGVQMVVDEMNI---LTTIFLRYDNER--IYYPNSVL 435 (559)
Q Consensus 393 ~PFdVGDrI~I-----~g~~g~VeeI~L---l~T~f~~~dg~~--V~IPNs~L 435 (559)
..|++||+|+| .|..|.|.+++- +-+.-...-+.. +.+|++.+
T Consensus 85 ~~~~~Gd~V~I~~GPf~G~~g~v~~~d~~k~~v~v~l~~~~~~~~v~v~~~~l 137 (145)
T TIGR00405 85 ESIKKGDIVEIISGPFKGERAKVIRVDESKEEVTLELIEAAVPIPVTVKGDQV 137 (145)
T ss_pred cccCCCCEEEEeecCCCCCeEEEEEEcCCCCEEEEEEEEcCccceEEEeeeEE
Confidence 35999999999 368899998752 111111223444 66776665
No 100
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=21.78 E-value=1.6e+02 Score=28.88 Aligned_cols=56 Identities=13% Similarity=0.201 Sum_probs=36.1
Q ss_pred HHHHhccccc-CCCccceeHhHHHhh----cC---ChHHHHHHHHHHhhhhccccccHHHHHHHHH
Q 008622 253 ADKIIANIGS-DPQSEFIEKDRLLEF----LQ---NERHVKYMLKLFVGAARSGKINKSDFKKWVI 310 (559)
Q Consensus 253 Ar~if~~~~~-~~g~~~i~~~dl~~~----~~---~~e~a~~af~lfd~~~~~g~Is~~~~~~~v~ 310 (559)
-+..|++|.. +| ...++.+++... || ...-+..+|..||.+ .+|.|+.+|+...+.
T Consensus 28 i~~~Yr~Fk~~cP-~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~-~dg~i~F~Efi~als 91 (193)
T KOG0044|consen 28 IQQWYRGFKNECP-SGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKN-KDGTIDFLEFICALS 91 (193)
T ss_pred HHHHHHHhcccCC-CCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhccc-CCCCcCHHHHHHHHH
Confidence 3445555554 12 234666666543 44 222388999999988 999999998665543
No 101
>PRK12288 GTPase RsgA; Reviewed
Probab=21.73 E-value=2.8e+02 Score=29.53 Aligned_cols=31 Identities=26% Similarity=0.368 Sum_probs=24.7
Q ss_pred CcCCCCEEEEC---Ce----EEEEEEEeeEEEEEEecC
Q 008622 394 PFDVGDRCIID---GV----QMVVDEMNILTTIFLRYD 424 (559)
Q Consensus 394 PFdVGDrI~I~---g~----~g~VeeI~Ll~T~f~~~d 424 (559)
+.-|||||.+. +. .|.|++|--+.+.+.+.+
T Consensus 72 ~~~vGD~V~~~~~~~~~~~~~~~I~~il~R~n~L~R~~ 109 (347)
T PRK12288 72 SLVTGDRVVWRPGKEALEGVSGVVEAVHPRTSVLTRPD 109 (347)
T ss_pred CCCCCcEEEEEeCCCcccccceEEEEEecccceEECCC
Confidence 46899999984 22 389999999999988755
No 102
>PRK10377 PTS system glucitol/sorbitol-specific transporter subunit IIA; Provisional
Probab=21.66 E-value=1.1e+02 Score=27.64 Aligned_cols=24 Identities=8% Similarity=0.054 Sum_probs=20.9
Q ss_pred cCCcCCCCEEEECCeEEEEEEEee
Q 008622 392 THPFDVGDRCIIDGVQMVVDEMNI 415 (559)
Q Consensus 392 ~~PFdVGDrI~I~g~~g~VeeI~L 415 (559)
.....+||.+.||+..+.|..+|=
T Consensus 49 ~~~i~~Gd~l~i~~~~Y~ItaVG~ 72 (120)
T PRK10377 49 KGALQPGLQFELGQHRYPVTAVGS 72 (120)
T ss_pred cCccCCCCEEEECCEEEEEEEEhH
Confidence 456899999999999999998863
No 103
>PF00677 Lum_binding: Lumazine binding domain; InterPro: IPR001783 The following proteins have been shown [, ] to be structurally and evolutionary related: Riboflavin synthase alpha chain (2.5.1.9 from EC) (RS-alpha) (gene ribC in Escherichia coli, ribB in Bacillus subtilis and Photobacterium leiognathi, RIB5 in yeast. This enzyme synthesises riboflavin from two moles of 6,7- dimethyl-8-(1'-D-ribityl)lumazine (Lum), a pteridine-derivative. Photobacterium phosphoreum lumazine protein (LumP) (gene luxL). LumP is a protein that modulates the colour of the bioluminescence emission of bacterial luciferase. In the presence of LumP, light emission is shifted to higher energy values (shorter wavelength). LumP binds non-covalently to 6,7-dimethyl-8-(1'-D-ribityl)lumazine. Vibrio fischeri yellow fluorescent protein (YFP) (gene luxY). Like LumP, YFP modulates light emission but towards a longer wavelength. YFP binds non-covalently to FMN. These proteins seem to have evolved from the duplication of a domain of about 100 residues. In its C-terminal section, this domain contains a conserved motif [KR]-V-N-[LI]-E which has been proposed to be the binding site for lumazine (Lum) and some of its derivatives. RS-alpha which binds two molecules of Lum has two perfect copies of this motif, while LumP which binds one molecule of Lum, has a Glu instead of Lys/Arg in the first position of the second copy of the motif. Similarly, YFP, which binds to one molecule of FMN, also seems to have a potentially dysfunctional binding site by substitution of Gly for Glu in the last position of the first copy of the motif.; GO: 0004746 riboflavin synthase activity, 0009231 riboflavin biosynthetic process; PDB: 3DDY_A 1KZL_A 3A3G_B 3A35_B 3A3B_B 1I8D_C 1PKV_B 1HZE_B 1I18_B.
Probab=21.55 E-value=1.6e+02 Score=24.62 Aligned_cols=22 Identities=23% Similarity=0.567 Sum_probs=19.5
Q ss_pred CCcCCCCEEEECCeEEEEEEEe
Q 008622 393 HPFDVGDRCIIDGVQMVVDEMN 414 (559)
Q Consensus 393 ~PFdVGDrI~I~g~~g~VeeI~ 414 (559)
..+.+||.|-+||...+|.+++
T Consensus 32 ~~~~~g~SIavnGvcLTV~~~~ 53 (85)
T PF00677_consen 32 SDLKIGGSIAVNGVCLTVTDIN 53 (85)
T ss_dssp GTG-TTSEEEETTEEEEEEEEE
T ss_pred hhCccCcEEEECCeeeEEEEec
Confidence 5689999999999999999988
No 104
>TIGR00849 gutA PTS system, glucitol/sorbitol-specific IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. This family consists only of glucitol-specific transporters, and occur both in Gram-negative and Gram-positive bacteria.The system in E.Coli consists of a IIA protein, and a IIBC protein. This family is specific for the IIA component.
Probab=20.96 E-value=1.1e+02 Score=27.53 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=20.9
Q ss_pred cCCcCCCCEEEECCeEEEEEEEee
Q 008622 392 THPFDVGDRCIIDGVQMVVDEMNI 415 (559)
Q Consensus 392 ~~PFdVGDrI~I~g~~g~VeeI~L 415 (559)
..+..+||.+.||+..+.|..+|=
T Consensus 49 ~~~i~~Gd~l~i~~~~Y~ItaVG~ 72 (121)
T TIGR00849 49 KGTLKPGQVFMIGGIAYPVTAVGD 72 (121)
T ss_pred cCCcCCCCEEEECCEEEEEEEEhH
Confidence 457899999999999999998863
No 105
>PRK10692 hypothetical protein; Provisional
Probab=20.85 E-value=1.1e+02 Score=25.94 Aligned_cols=20 Identities=30% Similarity=0.574 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008622 124 HIITRTLACFLAGAALWLVK 143 (559)
Q Consensus 124 ~~v~~~l~~~~~~~~~~l~~ 143 (559)
+...-.|+++|++|++||+-
T Consensus 41 ~~~~gal~~IFiGAllWL~G 60 (92)
T PRK10692 41 FFAHGALLSIFVGALLWLAG 60 (92)
T ss_pred HHHhhHHHHHHHHHHHHHhc
Confidence 34778899999999999974
No 106
>PF09204 Colicin_immun: Bacterial self-protective colicin-like immunity; InterPro: IPR015287 Colicin D is a bacteriocin that kills target cells by cleaving tRNA(Arg). Colicin D immunity protein (ImmD) inhibits the bactericidal activity of colicin D by binding to its tRNase catalytic domain []. This entry represents the structural domain of ImmD and related klebicin and microcin immunity proteins. ; GO: 0015643 toxin binding, 0030153 bacteriocin immunity; PDB: 1V74_B 1TFO_B 1TFK_B.
Probab=20.38 E-value=2.7e+02 Score=23.70 Aligned_cols=45 Identities=22% Similarity=0.318 Sum_probs=29.5
Q ss_pred hccccccHHHHHHHHHHHHHhhHHHHhhccChhHHHHHHHHHHHH
Q 008622 295 ARSGKINKSDFKKWVIKVYKDRETLKRSLNDAKTAIEELNRILSA 339 (559)
Q Consensus 295 ~~~g~Is~~~~~~~v~~i~~eRk~l~~sl~d~~t~v~~L~~il~~ 339 (559)
..+|.|+-++|.....+.++..+......+|.+.+-..++.++..
T Consensus 12 Fv~~~IsA~~Fse~y~e~wk~Er~~~~~~~d~~~l~~~l~~lF~~ 56 (88)
T PF09204_consen 12 FVNGEISADEFSEAYIELWKIERDSGYLLKDDEKLFECLSSLFCA 56 (88)
T ss_dssp HHTTSS-HHHHHHHHH----HHHHHHTT-SS-HHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHhhccccccccccccHHHHHHHHHHHHH
Confidence 368999999999999988876666666677877777777777653
Done!