Query 008623
Match_columns 559
No_of_seqs 194 out of 2315
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 07:52:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008623.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008623hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aps_A DI-OR tripeptide H+ sym 100.0 2.3E-28 8E-33 263.2 24.6 427 26-519 9-447 (491)
2 2xut_A Proton/peptide symporte 100.0 1E-28 3.5E-33 268.4 17.3 439 27-520 9-467 (524)
3 3o7q_A L-fucose-proton symport 99.9 5.5E-24 1.9E-28 225.0 24.4 359 27-522 23-409 (438)
4 1pw4_A Glycerol-3-phosphate tr 99.9 1.5E-24 5.2E-29 230.0 18.3 376 29-520 27-409 (451)
5 4gc0_A D-xylose-proton symport 99.9 1.6E-23 5.6E-28 225.1 13.8 153 65-229 54-214 (491)
6 2gfp_A EMRD, multidrug resista 99.9 3.7E-23 1.3E-27 214.6 8.8 167 33-230 3-169 (375)
7 2cfq_A Lactose permease; trans 99.8 4.4E-21 1.5E-25 202.9 5.8 169 30-226 7-178 (417)
8 3o7q_A L-fucose-proton symport 99.4 6.3E-13 2.1E-17 139.9 13.5 168 30-230 258-427 (438)
9 1pw4_A Glycerol-3-phosphate tr 99.4 4.5E-13 1.5E-17 141.4 11.0 179 30-235 252-433 (451)
10 2cfq_A Lactose permease; trans 99.3 2.7E-12 9.4E-17 135.2 11.0 177 31-237 221-401 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.2 8.7E-11 3E-15 125.7 13.1 185 32-238 285-474 (491)
12 4gc0_A D-xylose-proton symport 99.0 8E-10 2.7E-14 118.1 11.4 183 33-240 279-467 (491)
13 2gfp_A EMRD, multidrug resista 98.9 2.2E-10 7.6E-15 118.0 0.6 164 30-222 199-363 (375)
14 2xut_A Proton/peptide symporte 98.2 7.7E-07 2.6E-11 95.7 5.8 149 68-237 337-504 (524)
No 1
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.96 E-value=2.3e-28 Score=263.19 Aligned_cols=427 Identities=20% Similarity=0.315 Sum_probs=279.5
Q ss_pred CCCccchhhHhhHHHHHHHHHHhhhhhHHHHHhhh-----cCCChhhhHHHHHHHHHHHHHhhhHHHHHhHh-ccchhHH
Q 008623 26 TGTWKACPFILGNECCERLAYYGMSTNLVRYFKHQ-----LDQSSSTASKNVLDWSGTCYITPLIGAFLADA-YLGRYWT 99 (559)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr-~~Grr~~ 99 (559)
++++|.++.+++..++...++|++..+++.|++++ +|.+..+.+++.+.+.++..++.+++|+++|| + |||++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~ 87 (491)
T 4aps_A 9 FGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPA 87 (491)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHH
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHH
Confidence 45667788999999999999999999999999988 99999999999999999999999999999999 8 99999
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHh
Q 008623 100 IAIFSIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAE 179 (559)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~ 179 (559)
++.+.++.+++.+++.++ .+.+.++++|++.|++.+...+...++++|++|+++
T Consensus 88 ~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~--- 141 (491)
T 4aps_A 88 VFWGGVLIMLGHIVLALP-----------------------FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHD--- 141 (491)
T ss_dssp HHHHHHHHHHHHHHHHSC-----------------------CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCT---
T ss_pred HHHHHHHHHHHHHHHHHh-----------------------hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccc---
Confidence 999999999988888765 456778999999999999999999999999999875
Q ss_pred hhccccchhhhhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHhcccccccc---CCCCC-hhHHHHHH
Q 008623 180 KKHKSSFFNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQ---KPGGS-PLTRICQV 255 (559)
Q Consensus 180 ~~~r~~~~~~~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~ 255 (559)
++|+.++++++.+.++|..++|.+++++.+..||+++|++.++..+++++..++..++..++ +++++ +.++..+.
T Consensus 142 -~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (491)
T 4aps_A 142 -RRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPL 220 (491)
T ss_dssp -THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHH
T ss_pred -ccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHH
Confidence 13667888899999999999999999999989999999998877666665554443322211 11111 11111110
Q ss_pred HHHHHhhccccCCCcc--chhhhcccccccccCCcccCCCCccchhhhhhhhhccccccccCCCccccchhhHHHHHHHH
Q 008623 256 VAASIRKHKVELPADK--SLLYETADAESNITGSRKLDHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIV 333 (559)
Q Consensus 256 ~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 333 (559)
... .+...-... ..+....+.. +.+................. ....|+... ....+.++..
T Consensus 221 ~~~----~g~~l~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~ 283 (491)
T 4aps_A 221 LVK----VSLAVAGFIAIIVVMNLVGWN---------SLPAYINLLTIVAIAIPVFY---FAWMISSVK-VTSTEHLRVV 283 (491)
T ss_dssp HHH----CCCCCHHHHHHHHHHHHHSSC---------CTTHHHHHHHHHHHHHHHHH---HHHHC-------------CT
T ss_pred HHH----HHHHHHHHHHHHHHHHhccCc---------ccccchhhhhHHHHHHHHHH---HHHHhhccc-ccHHHHHHHH
Confidence 000 000000000 0000000000 00000000000000000000 000000000 0112233333
Q ss_pred HHHHHHHHHHHHHHHhcccchhhhhccccccCCCCCccceeCccccccccceeeehhhhhhhhhhhhhhhhccCCCCCCC
Q 008623 334 RLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLT 413 (559)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~~~r~~~~~~~~~ 413 (559)
....+++....++..+.+....+..+.. +..+. .....+.......+..++..++.++ +.+|+++|+ ..
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~----l~~r~~~r~--~~ 352 (491)
T 4aps_A 284 SYIPLFIAAVLFWAIEEQGSVVLATFAA---ERVDS--SWFPVSWFQSLNPLFIMLYTPFFAW----LWTAWKKNQ--PS 352 (491)
T ss_dssp THHHHHHHHHHHHHHHGGGGTHHHHHHH---HSCCC--SSSCSGGGTTHHHHHHHHHHHHHHH----HHHHTTTC-----
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHH---HHhcc--CccCHHHHhccchHHHHHHHHHHHH----HHHHHhccC--CC
Confidence 4455566666667776666665433221 11110 0033445666677777777777776 455555543 44
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhHHHhhhcCChhhHH
Q 008623 414 QLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRS 493 (559)
Q Consensus 414 ~~~~~~~G~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg 493 (559)
....+.+|.++++++++++...... .+ .....+.+++++.+++.+++.+...|..++++.|..|++.||
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~-------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g 421 (491)
T 4aps_A 353 SPTKFAVGLMFAGLSFLLMAIPGAL----YG-------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNS 421 (491)
T ss_dssp CHHHHHHHHHHHHHHHTTTHHHHHH----CC-------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSS
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHh----cC-------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHH
Confidence 5667778888888888777664321 00 011245667778889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhh
Q 008623 494 LCSALSLTTVALGNYLSSLLVTIVTS 519 (559)
Q Consensus 494 ~~~g~~~~~~~lg~~lg~~l~~~v~~ 519 (559)
+++|+.++..++|+.+++.+.+.+.+
T Consensus 422 ~~~g~~~~~~~~g~~i~~~~~~~~~~ 447 (491)
T 4aps_A 422 QMMSMWFLSSSVGSALNAQLVTLYNA 447 (491)
T ss_dssp SSTHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999888754
No 2
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.96 E-value=1e-28 Score=268.40 Aligned_cols=439 Identities=29% Similarity=0.471 Sum_probs=274.4
Q ss_pred CCccchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcC------CChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHH
Q 008623 27 GTWKACPFILGNECCERLAYYGMSTNLVRYFKHQLD------QSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTI 100 (559)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg------~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~ 100 (559)
+++|.++.+.+..++...++|++.++++.|+++++| .+..+.+++.+.+.++..++.+++|+++||++|||+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~ 88 (524)
T 2xut_A 9 KWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTI 88 (524)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 345677888999999999999999999999999999 99999999999999999999999999999955999999
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcc-hhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHh
Q 008623 101 AIFSIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDA-QSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAE 179 (559)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~ 179 (559)
+.+.++..++.+++.++ . +.+.+++.|++.|++.+...+...++++|++|+++
T Consensus 89 ~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~--- 142 (524)
T 2xut_A 89 LWLSLIYCVGHAFLAIF-----------------------EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN--- 142 (524)
T ss_dssp HHHHHHHHHHHHHHHHT-----------------------SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT---
T ss_pred HHHHHHHHHHHHHHHHh-----------------------cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc---
Confidence 99999988888887765 3 57788899999999999999999999999999887
Q ss_pred hhccccc---hhhhhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHhccccccccCCCCChhHHHHHHH
Q 008623 180 KKHKSSF---FNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVV 256 (559)
Q Consensus 180 ~~~r~~~---~~~~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (559)
|++. +++++.+.++|..++|.+++++.+..||+++|++.++..+++++..++..++.+++++++++..+..+.+
T Consensus 143 ---r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (524)
T 2xut_A 143 ---KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVI 219 (524)
T ss_dssp ---TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC-------------
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHH
Confidence 6544 4558999999999999999999988999999998887766666555544433322222222211111111
Q ss_pred HHHHhhccccCCCccchhhhcccccccccCCcccCCCCccchhhhhh---hhhccccccccCCCcc-------ccchhhH
Q 008623 257 AASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDKAA---VEIQSDNIKESVNPWR-------LCTVTQV 326 (559)
Q Consensus 257 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-------~~~~~~v 326 (559)
....+++....+ ......+.......... +........+.... ....... ...+|. ..+..+.
T Consensus 220 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 292 (524)
T 2xut_A 220 RSALLTKVEGKG-NIGLVLALIGGVSAAYA---LVNIPTLGIVAGLCCAMVLVMGFV---GAGASLQLERARKSHPDAAV 292 (524)
T ss_dssp -------CTTHH-HHHHHHHHHHHHHHHHT---GGGTTTTCSSHHHHHHHHHHHHHH---HTGGGTHHHHSCCSCCSSSS
T ss_pred HHHHhhhhcccC-ccchhhhhhhhhhhhhh---hcccchhhhhhhhhhhhhhhhccc---ccchhhHHhhhhccccHhHH
Confidence 111111110000 00000000000000000 00000000000000 0000000 001110 0001111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchhhhhccccccCCCCCccceeCccccccccceeeehhhhhhhhhhhhhhhhcc
Q 008623 327 EELKAIVRLLPIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFT 406 (559)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~~~r~~ 406 (559)
++.++......+++....++..+.+..+.+..+...++.. .+ .+.+.+...+.+..++..++.+++..|..+|.+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (524)
T 2xut_A 293 DGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKP----QW-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMG 367 (524)
T ss_dssp TTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCC----SS-SCHHHHHTTSGGGHHHHGGGTTTC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCC----ee-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcC
Confidence 2233444444455555556666666665554433222211 11 134455667777788888888887666666654
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhHHHhhhc
Q 008623 407 GHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQ 486 (559)
Q Consensus 407 ~~~~~~~~~~~~~~G~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~ 486 (559)
++ .+..+++.+|+++.+++++++...+.. .+.....+.+++++.+++.+++++...|..++++.|.
T Consensus 368 ~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 433 (524)
T 2xut_A 368 VK---LTALRKMGAGIAITGLSWIVVGTIQLM-----------MDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQ 433 (524)
T ss_dssp ------CCHHHHHTHHHHHHHHHHTTTTTTTT-----------TTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHH
T ss_pred CC---CChHHHHHHHHHHHHHHHHHHHHHHHH-----------hcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44 455667778888888777766542210 0001123566777888999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhh
Q 008623 487 APDAMRSLCSALSLTTVALGNYLSSLLVTIVTSI 520 (559)
Q Consensus 487 ~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~v~~~ 520 (559)
+|+++||+++|++++..++|+.+++.+.+.+.+.
T Consensus 434 ~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~ 467 (524)
T 2xut_A 434 APKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSP 467 (524)
T ss_dssp CCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSC
T ss_pred CcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999988753
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.92 E-value=5.5e-24 Score=225.03 Aligned_cols=359 Identities=10% Similarity=0.035 Sum_probs=231.1
Q ss_pred CCccchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHH
Q 008623 27 GTWKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSII 106 (559)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~ 106 (559)
+.++.+..+....++.........+.+|. +.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++.+.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~ 100 (438)
T 3o7q_A 23 SYIIPFALLCSLFFLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFL 100 (438)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHHH
Confidence 34445555556666666666666565655 6778999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccc
Q 008623 107 YVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSF 186 (559)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 186 (559)
.+++.+++..... ..+.+.++++|++.|++.+...+...++++|++|+++ |+++
T Consensus 101 ~~~~~~~~~~~~~--------------------~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~ 154 (438)
T 3o7q_A 101 YALGAALFWPAAE--------------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFR 154 (438)
T ss_dssp HHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------HHHH
T ss_pred HHHHHHHHHhccc--------------------cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------HHHH
Confidence 9999888833211 1457889999999999999999999999999999987 9999
Q ss_pred hhhhhHHHhHHHHHHhhhhhhhc-cccC-------------------------chhhhHHHHHHHHHHHHHHHhcc-ccc
Q 008623 187 FNWFYFSINIGALIASSVLVWIQ-DNEG-------------------------WGWGFGIPAVAMAIAVVSFFSGT-RLF 239 (559)
Q Consensus 187 ~~~~~~~~~iG~~igp~i~~~l~-~~~g-------------------------~~~~f~i~~~~~~i~~~~~~~~~-~~~ 239 (559)
+++.+.+.++|..++|.+++++. +..+ |++.|++.+...++..+..++.. ++.
T Consensus 155 ~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~ 234 (438)
T 3o7q_A 155 LNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPAL 234 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 99999999999999999999988 5554 89999776655544444333321 111
Q ss_pred cccCCCCChhHHHHHHHHHHHhhccccCCCccchhhhcccccccccCCcccCCCCccchhhhhhhhhccccccccCCCcc
Q 008623 240 RNQKPGGSPLTRICQVVAASIRKHKVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDKAAVEIQSDNIKESVNPWR 319 (559)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (559)
+++++++++.. + . .. ++
T Consensus 235 ~~~~~~~~~~~-------------------------------------------~--~---~~--------------~~- 251 (438)
T 3o7q_A 235 QSDNHSDAKQG-------------------------------------------S--F---SA--------------SL- 251 (438)
T ss_dssp TTTCCCCSSTT-------------------------------------------S--H---HH--------------HH-
T ss_pred ccccccccccc-------------------------------------------c--h---hh--------------hH-
Confidence 10000000000 0 0 00 00
Q ss_pred ccchhhHHHHHHHHHHH-HHHHHHHHHHHHhcccchhhhhccccccCCCCCccceeCccccccccceeeehhhhhhhhhh
Q 008623 320 LCTVTQVEELKAIVRLL-PIWATGIIFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFI 398 (559)
Q Consensus 320 ~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~il~~~l~~~~~ 398 (559)
+++.+.|.+.... ...+............+.++. ++.+|. -....+.......+..++..++..+
T Consensus 252 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~g~-- 317 (438)
T 3o7q_A 252 ----SRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAV------EEIPGM--TAGFAANYLTGTMVCFFIGRFTGTW-- 317 (438)
T ss_dssp ----HHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHSTTC--CHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred ----HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hccCCc--chhHHHHHHHHHHHHHHHHHHHHHH--
Confidence 0000011111111 111111111112112222101 122220 0001112223333444444444444
Q ss_pred hhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHhhh
Q 008623 399 VPVTRKFTGHKNGLTQLQRMGIGLFISILSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIG 478 (559)
Q Consensus 399 ~~~~~r~~~~~~~~~~~~~~~~G~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~ 478 (559)
+.+| .++++.+..+.++.++++++..... + .+.....++.+++.+...|.
T Consensus 318 --l~~r-------~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~-~~~~~~~~~~g~~~~~~~~~ 367 (438)
T 3o7q_A 318 --LISR-------FAPHKVLAAYALIAMALCLISAFAG--------------------G-HVGLIALTLCSAFMSIQYPT 367 (438)
T ss_dssp --HHHH-------SCHHHHHHHHHHHHHHHHHHHHHCC--------------------H-HHHHHHHHHHHHHHTTHHHH
T ss_pred --HHHH-------hcchHHHHHHHHHHHHHHHHHHHcC--------------------C-cHHHHHHHHHHHHHHHHHHH
Confidence 4455 3444566677777776666555421 2 22344457778888888899
Q ss_pred hHHHhhhcCChhhHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhc
Q 008623 479 QLEFFYEQAPDAMRSLCSALSLTTVALGNYLSSLLVTIVTSIST 522 (559)
Q Consensus 479 ~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~v~~~~~ 522 (559)
.+++..+..|++ ++.+.++.. .+.+|+.++|.+.|.+.+..+
T Consensus 368 ~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g 409 (438)
T 3o7q_A 368 IFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG 409 (438)
T ss_dssp HHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 999999999977 999999887 677999999999999987654
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.92 E-value=1.5e-24 Score=230.03 Aligned_cols=376 Identities=11% Similarity=-0.003 Sum_probs=237.2
Q ss_pred ccchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHH
Q 008623 29 WKACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYV 108 (559)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~ 108 (559)
++.++.+.+..++.....+.+.+.+|.+. +++ .+..+.+++.+.+.++..++.+++|+++||+ |||++++.+.++.+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHH
Confidence 44556666667777777666667776555 566 9999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHhh----hhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccc
Q 008623 109 IGMTFLTV----TASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKS 184 (559)
Q Consensus 109 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 184 (559)
++.+++++ + .+.+.+++.|++.|++.+...+...++++|++|+++ |+
T Consensus 104 ~~~~~~~~~~~~~-----------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r~ 154 (451)
T 1pw4_A 104 AVMLFMGFVPWAT-----------------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RG 154 (451)
T ss_dssp HHHHHHHHCHHHH-----------------------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HH
T ss_pred HHHHHHHhhhhcc-----------------------ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------hh
Confidence 99988887 5 356778899999999999999999999999999886 99
Q ss_pred cchhhhhHHHhHHHHHHhhhhhhhccccC-chhhhHHHHHHHHHHHHHHHhccccccccCCCCChhHHHHHHHHHHHhhc
Q 008623 185 SFFNWFYFSINIGALIASSVLVWIQDNEG-WGWGFGIPAVAMAIAVVSFFSGTRLFRNQKPGGSPLTRICQVVAASIRKH 263 (559)
Q Consensus 185 ~~~~~~~~~~~iG~~igp~i~~~l~~~~g-~~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (559)
+++++.+.+.++|..++|.+++++.+..| |+++|++.++..++..+..++..++........+. .
T Consensus 155 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------------- 220 (451)
T 1pw4_A 155 GIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI-E------------- 220 (451)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-T-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh-h-------------
Confidence 99999999999999999999999888888 99999988876665554443333321111000000 0
Q ss_pred cccCCCccchhhhcccccccccCCcccCCCCccchhhhhhhhhccccccccCCCccccchhhHHHHHHHHHHHHHHHHHH
Q 008623 264 KVELPADKSLLYETADAESNITGSRKLDHTKDFSFFDKAAVEIQSDNIKESVNPWRLCTVTQVEELKAIVRLLPIWATGI 343 (559)
Q Consensus 264 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 343 (559)
+. +.++.++ . .. . . . +..+++........+.+.+.... +...
T Consensus 221 -----~~-----~~~~~~~-~------~~---------~-----~-~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 262 (451)
T 1pw4_A 221 -----EY-----KNDYPDD-Y------NE---------K-----A-E---QELTAKQIFMQYVLPNKLLWYIA---IANV 262 (451)
T ss_dssp -----TT-----CCC--------------------------------------CCTHHHHHHTSSCHHHHHHH---HHHH
T ss_pred -----hh-----ccccccc-c------hh---------h-----h-h---cccccccchHHHHHcCHHHHHHH---HHHH
Confidence 00 0000000 0 00 0 0 0 00000000000001112222211 1111
Q ss_pred HHHHHhcccchhhhhccccccCCCCCccceeCccccccccceeeehhhhhhhhhhhhhhhhccCCCCCCChhHHHHHHHH
Q 008623 344 IFSAVYSQMSSLFVLQGERMDTHVGNSSFKIPPASLSIFDTLSVIFWVPIYDRFIVPVTRKFTGHKNGLTQLQRMGIGLF 423 (559)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~G~~ 423 (559)
+.+..+.....+.+. ++....|. -....+.......+..+++.++..+ +.+|+.+ ++++.+.++.+
T Consensus 263 ~~~~~~~~~~~~~~~---~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~g~----l~~~~~~-----~~~~~~~~~~~ 328 (451)
T 1pw4_A 263 FVYLLRYGILDWSPT---YLKEVKHF--ALDKSSWAYFLYEYAGIPGTLLCGW----MSDKVFR-----GNRGATGVFFM 328 (451)
T ss_dssp HHHHHHHHHHHHHHH---HBTTBSCC--CHHHHHHHHHHHHHHHHHHHHHHHH----HHHHTST-----TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhc-----CCchhHHHHHH
Confidence 111111111222211 22222230 0011122333444445555555554 4455300 22234445544
Q ss_pred HHH-HHHHHHHHHHHHHHHHhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHhhhhHHHhhhcCChhhHHHHHHHHHHH
Q 008623 424 ISI-LSMIAAAVLELIRLRMVREHNYYDLPEMPMSIMWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLTT 502 (559)
Q Consensus 424 ~~~-i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~ 502 (559)
+.. ++++.+.... ..+.+...+..++.+++.+...+..+.++.|..|++.||+++|+.++.
T Consensus 329 ~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 390 (451)
T 1pw4_A 329 TLVTIATIVYWMNP------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLF 390 (451)
T ss_dssp HHHHHHHHHTTSCC------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHH
Confidence 444 4444433210 124455566667788888888888899999999999999999999999
Q ss_pred HHH-HHHHhhHHHHHhhhh
Q 008623 503 VAL-GNYLSSLLVTIVTSI 520 (559)
Q Consensus 503 ~~l-g~~lg~~l~~~v~~~ 520 (559)
.++ |+.+++.+.|.+.+.
T Consensus 391 ~~~~g~~~~~~~~g~l~~~ 409 (451)
T 1pw4_A 391 GYLGGSVAASAIVGYTVDF 409 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 999 999999999998764
No 5
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.89 E-value=1.6e-23 Score=225.14 Aligned_cols=153 Identities=15% Similarity=0.184 Sum_probs=115.0
Q ss_pred hhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhH
Q 008623 65 SSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSA 144 (559)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (559)
..+.+++.+.+.++..++++++|+++||+ |||++++++.+++.++.++++++........ . ..+....-..+.+
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~---~--~~~~~~~~a~~~~ 127 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSIN---P--DNTVPVYLAGYVP 127 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSS---S--SSSCCGGGGGCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhc---c--hhHHHHHHhhhHH
Confidence 34567888999999999999999999999 9999999999999999988875411000000 0 0000001135688
Q ss_pred HHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHhhhhhhhccc--------cCchh
Q 008623 145 TFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDN--------EGWGW 216 (559)
Q Consensus 145 ~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i~~~l~~~--------~g~~~ 216 (559)
.++++|++.|+|.|+..+..+.+++|..|++. |++..++.+.+..+|..+++.++..+... .+|++
T Consensus 128 ~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (491)
T 4gc0_A 128 EFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRY 201 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHH
Confidence 89999999999999999999999999999997 99999999999999999998877655432 23666
Q ss_pred hhHHHHHHHHHHH
Q 008623 217 GFGIPAVAMAIAV 229 (559)
Q Consensus 217 ~f~i~~~~~~i~~ 229 (559)
.+.+..+..++.+
T Consensus 202 ~~~~~~~~~~~~~ 214 (491)
T 4gc0_A 202 MFASECIPALLFL 214 (491)
T ss_dssp HHHTTHHHHHHHH
T ss_pred Hhhhhhhhhhhhh
Confidence 6555554444333
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.88 E-value=3.7e-23 Score=214.60 Aligned_cols=167 Identities=13% Similarity=0.083 Sum_probs=146.5
Q ss_pred hhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHH
Q 008623 33 PFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMT 112 (559)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~ 112 (559)
+.++...++.......+.+.+|.+ .+++|.+..+.+++.+.+.+...++.++.|+++||+ |||++++.+.++..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence 445566677777777777777765 567999999999999999999999999999999999 999999999999999988
Q ss_pred HHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhH
Q 008623 113 FLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYF 192 (559)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 192 (559)
...++ ++.+.+++.|++.|++.+...+...+++.|.+|+++ |++.+++.+.
T Consensus 81 ~~~~~-----------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 131 (375)
T 2gfp_A 81 VAVTT-----------------------SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNM 131 (375)
T ss_dssp HHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHH
T ss_pred HHHHh-----------------------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHH
Confidence 88776 467889999999999999999999999999999886 9999999999
Q ss_pred HHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHH
Q 008623 193 SINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVV 230 (559)
Q Consensus 193 ~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~ 230 (559)
..++|..++|.+++++.+..||++.|.+.++..++..+
T Consensus 132 ~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 132 GILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888999999877765554443
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.82 E-value=4.4e-21 Score=202.88 Aligned_cols=169 Identities=7% Similarity=-0.120 Sum_probs=117.6
Q ss_pred cchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHH
Q 008623 30 KACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVI 109 (559)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~ 109 (559)
|.++.+....++...++..+.+++|.|+++++|++..+.+++.+.+.++..++++++|+++||+ ||||+++++.++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~ 85 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence 3466677777777777778889999999999999999999999999999999999999999999 999999988876544
Q ss_pred HHHHH---hhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccc
Q 008623 110 GMTFL---TVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSF 186 (559)
Q Consensus 110 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 186 (559)
+.... .+... ....+...+.+.+++.+...+...+...+..++.. ++++..
T Consensus 86 ~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~~~~ 139 (417)
T 2cfq_A 86 MFAPFFIFIFGPL----------------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRSNFE 139 (417)
T ss_dssp CHHHHHHHTHHHH----------------------HHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH----HHHTCC
T ss_pred HHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh----hhcccc
Confidence 32111 11100 00012233444444444333333344444433211 135667
Q ss_pred hhhhhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHH
Q 008623 187 FNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMA 226 (559)
Q Consensus 187 ~~~~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~ 226 (559)
++..+...++|..++|.+++++.+ .+|++.|++.++..+
T Consensus 140 ~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~ 178 (417)
T 2cfq_A 140 FGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCAL 178 (417)
T ss_dssp HHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHH
Confidence 777777889999999999998876 589998887665433
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.43 E-value=6.3e-13 Score=139.93 Aligned_cols=168 Identities=16% Similarity=0.182 Sum_probs=136.6
Q ss_pred cchhhHhhHHHHHHHHHHhhhhhHHHH-HhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHH
Q 008623 30 KACPFILGNECCERLAYYGMSTNLVRY-FKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYV 108 (559)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~y-l~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~ 108 (559)
|.++..++..++.....+++..++|.| +++.+|++..+++.+.+...++..++.+++|+++||+ |||+++..+.++..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~ 336 (438)
T 3o7q_A 258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAM 336 (438)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence 456777778888888888899999999 8888899999999999999999999999999999998 99999999988877
Q ss_pred HHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchh
Q 008623 109 IGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFN 188 (559)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 188 (559)
++.+...+. .+.+. .+..++.+++.+...|...++..|.+|++ ++.+.+
T Consensus 337 ~~~~~~~~~-----------------------~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 385 (438)
T 3o7q_A 337 ALCLISAFA-----------------------GGHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSS 385 (438)
T ss_dssp HHHHHHHHC-----------------------CHHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHHHH
T ss_pred HHHHHHHHc-----------------------CCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccchhh
Confidence 776666544 22332 33447788888888899999989999855 556666
Q ss_pred hhhHHHhHHHHHHhhhhhhhccccC-chhhhHHHHHHHHHHHH
Q 008623 189 WFYFSINIGALIASSVLVWIQDNEG-WGWGFGIPAVAMAIAVV 230 (559)
Q Consensus 189 ~~~~~~~iG~~igp~i~~~l~~~~g-~~~~f~i~~~~~~i~~~ 230 (559)
+.. ...+|+.++|.+.|++.+..| ++..|.+.+++.++.++
T Consensus 386 ~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 386 FIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 555 556999999999999999988 99999877655544443
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.41 E-value=4.5e-13 Score=141.44 Aligned_cols=179 Identities=15% Similarity=0.135 Sum_probs=148.9
Q ss_pred cchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhcc-chhHHHHHHHHHHH
Q 008623 30 KACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYL-GRYWTIAIFSIIYV 108 (559)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~-Grr~~~~~~~~~~~ 108 (559)
|.++.+++..++....++++..++|.|+++.+|++..+.+.+.+...++..++.++.|+++||+. |||+.+..+.++..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 331 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 331 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 45778888888888999999999999999889999999999999999999999999999999942 78888877776655
Q ss_pred -HHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccch
Q 008623 109 -IGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFF 187 (559)
Q Consensus 109 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 187 (559)
++.+.+.+. + ..+.+.+.+..++.|++.+...+...+++.|.+|+++ |++++
T Consensus 332 ~~~~~~~~~~---~------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~ 384 (451)
T 1pw4_A 332 TIATIVYWMN---P------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAA 384 (451)
T ss_dssp HHHHHHTTSC---C------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHHH
T ss_pred HHHHHHHHHh---c------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------hhhHH
Confidence 554444332 1 1245666777788888888888888899999999987 99999
Q ss_pred hhhhHHHhH-HHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHhc
Q 008623 188 NWFYFSINI-GALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSG 235 (559)
Q Consensus 188 ~~~~~~~~i-G~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~ 235 (559)
++++...++ |..++|.+.|++.+..||+..|++.+++.+++.+..+..
T Consensus 385 ~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 385 GFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 999999999999999999999998887776666655443
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.33 E-value=2.7e-12 Score=135.18 Aligned_cols=177 Identities=7% Similarity=-0.006 Sum_probs=129.6
Q ss_pred chhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCC---hhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHH
Q 008623 31 ACPFILGNECCERLAYYGMSTNLVRYFKHQLDQS---SSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIY 107 (559)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s---~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~ 107 (559)
.++..++..++....++.+..++|.|+.+.++.. ....+...+...+...++.++.|+++||+ |||++++.+.++.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~ 299 (417)
T 2cfq_A 221 KLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIM 299 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHH
Confidence 3454444445555556666677899987766532 34456667777778888899999999999 9999998888777
Q ss_pred HHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccch
Q 008623 108 VIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFF 187 (559)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 187 (559)
+++.+...+. .+.+.+.+...+.+++.+...+....+.+|.+|++. |+++.
T Consensus 300 ~~~~~~~~~~-----------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~ 350 (417)
T 2cfq_A 300 SVRIIGSSFA-----------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIY 350 (417)
T ss_dssp HHHHHHHTTC-----------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HHHHH
T ss_pred HHHHHHHHHh-----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHH
Confidence 7765555433 234455555566666666555666789999999886 89998
Q ss_pred hh-hhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHhccc
Q 008623 188 NW-FYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTR 237 (559)
Q Consensus 188 ~~-~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~ 237 (559)
++ ++...++|+.++|.++|++.+..|++..|.+.+++.+++.+..+...+
T Consensus 351 g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 351 LVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence 88 588888999999999999998888888888877776666665544443
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.19 E-value=8.7e-11 Score=125.68 Aligned_cols=185 Identities=11% Similarity=0.011 Sum_probs=136.6
Q ss_pred hhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHH-----HHHHH
Q 008623 32 CPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIA-----IFSII 106 (559)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~-----~~~~~ 106 (559)
.+.+....++....+.....+++.|.++.++.+..+.+.+.....+...++.++.|++.||+ |||+... .+.++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~ 363 (491)
T 4aps_A 285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMF 363 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHH
Confidence 44455556666666777778899999998888877888888889999999999999999998 9986554 66666
Q ss_pred HHHHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccc
Q 008623 107 YVIGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSF 186 (559)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 186 (559)
..++.+.+........ .....+.+.+.+..++.|++.+...+...+++.|.+|++. |+++
T Consensus 364 ~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~ 423 (491)
T 4aps_A 364 AGLSFLLMAIPGALYG--------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------NSQM 423 (491)
T ss_dssp HHHHHTTTHHHHHHCC--------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------SSSS
T ss_pred HHHHHHHHHHHHHhcC--------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HHHH
Confidence 6666655544311000 0011245566777788999999989999999999999997 9999
Q ss_pred hhhhhHHHhHHHHHHhhhhhhhccccCchhhhHHHHHHHHHHHHHHHhcccc
Q 008623 187 FNWFYFSINIGALIASSVLVWIQDNEGWGWGFGIPAVAMAIAVVSFFSGTRL 238 (559)
Q Consensus 187 ~~~~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~~~~~i~~~~~~~~~~~ 238 (559)
.++++...++|..++|.+.+++.+ .++.+.|.+.+...+++.+..++..++
T Consensus 424 ~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 424 MSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp THHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988875 467777777776666666555555443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.02 E-value=8e-10 Score=118.07 Aligned_cols=183 Identities=11% Similarity=0.017 Sum_probs=121.6
Q ss_pred hhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHHHHHHHH
Q 008623 33 PFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSIIYVIGMT 112 (559)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~ 112 (559)
.......++.....+....+...++.+..+.+............+...++.++++++.||+ |||+.++.+.....++.+
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~~~ 357 (491)
T 4gc0_A 279 VIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMF 357 (491)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHHHH
Confidence 3333333443333333333344455567788888877778888889999999999999999 999999999888777776
Q ss_pred HHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhH
Q 008623 113 FLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYF 192 (559)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 192 (559)
.+....... ......+....+..........|..+.+.+|.+|.+. |+++.++.+.
T Consensus 358 ~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~------R~~~~g~~~~ 413 (491)
T 4gc0_A 358 SLGTAFYTQ------------------APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------RGKALAIAVA 413 (491)
T ss_dssp HHHHHHHTT------------------CCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTT------HHHHHHHHHH
T ss_pred HHHHHHhcc------------------cchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhH------HHHHHHHHHH
Confidence 665442111 1122222222222222223345677789999999998 9999999999
Q ss_pred HHhHHHHHHhhhhhhhcc------ccCchhhhHHHHHHHHHHHHHHHhcccccc
Q 008623 193 SINIGALIASSVLVWIQD------NEGWGWGFGIPAVAMAIAVVSFFSGTRLFR 240 (559)
Q Consensus 193 ~~~iG~~igp~i~~~l~~------~~g~~~~f~i~~~~~~i~~~~~~~~~~~~~ 240 (559)
...+|+.+++.+.+.+.+ ..++..+|++.+.+.+++.+..++..|+.+
T Consensus 414 ~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 414 AQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 467 (491)
T ss_dssp HHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCC
Confidence 999999999887766543 234566777777777777666666555443
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.88 E-value=2.2e-10 Score=118.03 Aligned_cols=164 Identities=13% Similarity=-0.004 Sum_probs=127.0
Q ss_pred cchhhHhhHHHHHHHHHHhhhhhHHHHHhhhcCCChhhhHHHHHHHHHHHHHhhhHHHHHhHhccchhHHHHHHHHH-HH
Q 008623 30 KACPFILGNECCERLAYYGMSTNLVRYFKHQLDQSSSTASKNVLDWSGTCYITPLIGAFLADAYLGRYWTIAIFSII-YV 108 (559)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~-~~ 108 (559)
|.++...+..++.....+.+..++|.|+++++|.++.+.+.+.+...++..++.++.|++.||+ |++ +..+... ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence 4567777788888888888899999999988999999999999999999999999999999998 872 2333322 22
Q ss_pred HHHHHHhhhhccCCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchh
Q 008623 109 IGMTFLTVTASVSGLKPVCHGPRGEETCQVTDAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFN 188 (559)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 188 (559)
.+........ ....+.+.+.+..++.|++.+...+...++..|.+| ++ |+++.+
T Consensus 276 ~~~~~~~~~~-------------------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~g~~~g 329 (375)
T 2gfp_A 276 AGLLMWIPDW-------------------FGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------AGTAGA 329 (375)
T ss_dssp TSSSSSHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------HHHHHH
T ss_pred HHHHHHHHhh-------------------hccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------cchHHH
Confidence 2222111110 001245556677788899999999999999999988 54 899999
Q ss_pred hhhHHHhHHHHHHhhhhhhhccccCchhhhHHHH
Q 008623 189 WFYFSINIGALIASSVLVWIQDNEGWGWGFGIPA 222 (559)
Q Consensus 189 ~~~~~~~iG~~igp~i~~~l~~~~g~~~~f~i~~ 222 (559)
+.+...++|..++|.+.+.+.+..+|...+.+.+
T Consensus 330 ~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 330 LVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 9999999999999999999988777877766543
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.23 E-value=7.7e-07 Score=95.73 Aligned_cols=149 Identities=11% Similarity=0.029 Sum_probs=92.9
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHh----Hhccch----hHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccC
Q 008623 68 ASKNVLDWSGTCYITPLIGAFLA----DAYLGR----YWTIAIFSIIYVIGMTFLTVTASVSGLKPVCHGPRGEETCQVT 139 (559)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~G~la----Dr~~Gr----r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (559)
.+.+.....+...+..++.+++. ||. |+ ++.+..+.++..++.+.+.+...... ...
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--------------~~~ 401 (524)
T 2xut_A 337 PAMMQALNPLLVMLLIPFNNFVLYPAIERM-GVKLTALRKMGAGIAITGLSWIVVGTIQLMMD--------------GGS 401 (524)
T ss_dssp HHHHHTTSGGGHHHHGGGTTTC-------------CCHHHHHTHHHHHHHHHHTTTTTTTTTT--------------TTC
T ss_pred HHHHHHHHHHHHHHhHHHHHhhhHHHHHhc-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhc--------------CCC
Confidence 44444444455556666666653 444 43 34566677666666665544310000 001
Q ss_pred cchhHHHHHHHHHHHHhccCCCcccccccccCCCCcchHhhhccccchhhhhHHHhHHHHHHhhhhhhhcccc--Cc---
Q 008623 140 DAQSATFFVALYLIALGTGGIKPCVSSYGADQFDDADEAEKKHKSSFFNWFYFSINIGALIASSVLVWIQDNE--GW--- 214 (559)
Q Consensus 140 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~iG~~igp~i~~~l~~~~--g~--- 214 (559)
..+.+.+.+..++.|++.+...+...++..|.+|++. |++++++++...++|+.++|.+.+.+.+.. +|
T Consensus 402 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~ 475 (524)
T 2xut_A 402 ALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM------KGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQ 475 (524)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC------CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH------HhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 1245566677888999999999999999999999987 999999999999999999999999887743 12
Q ss_pred ------hhhhHHHHHHHHHHHHHHHhccc
Q 008623 215 ------GWGFGIPAVAMAIAVVSFFSGTR 237 (559)
Q Consensus 215 ------~~~f~i~~~~~~i~~~~~~~~~~ 237 (559)
+..|++.+.+.+++.+..++..+
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (524)
T 2xut_A 476 TGMSVTAFQMFFFAGFAILAAIVFALYAR 504 (524)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 22355555555555554444433
Done!