Query 008624
Match_columns 559
No_of_seqs 490 out of 3063
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 07:54:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008624.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008624hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 4.5E-43 1.5E-47 358.0 37.7 439 93-553 4-474 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 1.1E-38 3.8E-43 321.9 27.8 397 100-542 27-434 (451)
3 3o7q_A L-fucose-proton symport 100.0 2.7E-37 9.2E-42 310.5 32.2 362 104-532 29-423 (438)
4 4aps_A DI-OR tripeptide H+ sym 100.0 1.3E-32 4.5E-37 280.5 28.7 397 138-547 49-477 (491)
5 2gfp_A EMRD, multidrug resista 100.0 4.3E-34 1.5E-38 280.8 13.2 356 105-527 4-362 (375)
6 2cfq_A Lactose permease; trans 100.0 5.7E-30 2E-34 254.6 7.2 356 138-545 38-403 (417)
7 2xut_A Proton/peptide symporte 99.9 2.4E-27 8.2E-32 243.6 18.8 142 140-282 51-197 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.5 2.6E-13 8.8E-18 136.1 17.3 145 138-283 283-433 (451)
9 2cfq_A Lactose permease; trans 99.4 1.3E-12 4.4E-17 129.4 13.6 146 140-286 256-403 (417)
10 3o7q_A L-fucose-proton symport 99.4 8.4E-12 2.9E-16 124.6 16.5 139 377-519 43-182 (438)
11 4aps_A DI-OR tripeptide H+ sym 99.3 2.7E-11 9.2E-16 122.9 15.5 157 378-541 31-196 (491)
12 2gfp_A EMRD, multidrug resista 99.3 6.4E-12 2.2E-16 122.6 10.3 160 378-544 18-177 (375)
13 2xut_A Proton/peptide symporte 99.2 2.3E-10 7.7E-15 117.0 18.2 153 379-538 31-195 (524)
14 4gc0_A D-xylose-proton symport 99.1 2.4E-10 8.3E-15 115.8 12.3 150 138-287 307-467 (491)
15 2g9p_A Antimicrobial peptide l 68.9 3 0.0001 20.4 1.7 14 162-175 2-15 (26)
16 3mkt_A Multi antimicrobial ext 35.6 2.9E+02 0.01 26.1 27.2 35 213-247 141-175 (460)
17 4dve_A Biotin transporter BIOY 27.4 1.2E+02 0.0042 25.3 5.9 25 149-173 99-123 (198)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=4.5e-43 Score=357.98 Aligned_cols=439 Identities=31% Similarity=0.527 Sum_probs=337.1
Q ss_pred cchhhHHHHHHHHHHHHHhhhhhhhccccccccccCCCCCCC-CccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008624 93 AFSWSSVILPFLFPALGGLLFGYDIGATSGATISLQSPELSG-TTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLG 171 (559)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~G 171 (559)
+++.+..+.+.++++++.+++|||.+.++..++.+..+.... +...+.+..+.|++.+++.+|..+|++++|+++||+|
T Consensus 4 ~~~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~G 83 (491)
T 4gc0_A 4 QYNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFG 83 (491)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTC
T ss_pred CcChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566677777888999999999999998887765431110 0002445678899999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHH------------------hhcchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchh
Q 008624 172 RKRELIIAAVLYALGALTTA------------------YAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTL 233 (559)
Q Consensus 172 rr~~~~~~~~~~~i~~~~~~------------------~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~ 233 (559)
||++++++.+++.+++++++ +++|+++++++|+++|+|.|+..+....++.|+.|+++|++.
T Consensus 84 Rk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~ 163 (491)
T 4gc0_A 84 RRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKL 163 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhh
Confidence 99999999999999999998 478999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhcCC-------CcchHHHHHhhhHHHHHHHHHHhccCCchHHHHHHhhcCCCchhhHHH
Q 008624 234 ISLKELFIVLGILLGYFVGSFQINA-------VGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLLLRAVQGKGSLQEYKE 306 (559)
Q Consensus 234 ~~~~~~~~~~G~~~g~~~~~~l~~~-------~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~ 306 (559)
.++.+.+..+|.++++.++..+... ...||+.+.+..+..++..+..+++||||+|+..| ++.+
T Consensus 164 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~---------~~~~ 234 (491)
T 4gc0_A 164 VSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSR---------GKQE 234 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHT---------TCHH
T ss_pred HHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHc---------Cchh
Confidence 9999999999999999988766532 12689999999999998888889999999999875 5566
Q ss_pred HHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccccchhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHH
Q 008624 307 QAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPI 386 (559)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (559)
++.+.+++.+.++..++ +..+ .+......++.......++ .++..+......+.++.+.+.+.+|.+.+
T Consensus 235 ~a~~~l~~~~~~~~~~~----~~~~----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (491)
T 4gc0_A 235 QAEGILRKIMGNTLATQ----AVQE----IKHSLDHGRKTGGRLLMFG---VGVIVIGVMLSIFQQFVGINVVLYYAPEV 303 (491)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHH----HHHHHHHHHHHTTHHHHSC---CTHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHhHHHhcCCchhHH----HHHH----HHHHHHhhhhhhhHHHHhc---ccHHHHHHHHHHHHHHhhhhHHHhcchHH
Confidence 66666665543211100 0000 0000001111111122222 23445555666777778888888899998
Q ss_pred HHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHH
Q 008624 387 LQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVG 466 (559)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (559)
.+..+.+. ..........++..+++.++++++.||+|||+.+..+...+.++++.++..... ....+..+...+++..
T Consensus 304 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~ 381 (491)
T 4gc0_A 304 FKTLGAST-DIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT-QAPGIVALLSMLFYVA 381 (491)
T ss_dssp HHHSSCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHH
T ss_pred HHhcCCCc-cchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhc-ccchHHHHHHHHHHHH
Confidence 88888776 567777788889999999999999999999999999888888887777655432 2333444555555666
Q ss_pred HhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHh------hhhhHHHHHHHHHHHHHHHHHHH
Q 008624 467 CYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVF------IHFSIKMVSTWFMILLFDWLVQF 540 (559)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~------~g~~~~~~~~~~~~~~~~~~~~~ 540 (559)
++..+..++.+.+.+|++|++.|+++.|+.++++++++++++.+.+.+.+. .+....+++.+++.++..++.++
T Consensus 382 ~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~ 461 (491)
T 4gc0_A 382 AFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWK 461 (491)
T ss_dssp HHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 667777788889999999999999999999999999999999988776543 34455666677777777777778
Q ss_pred hhccccccCCchh
Q 008624 541 CRSCWEQRTFSSS 553 (559)
Q Consensus 541 ~~~~~~~~~~~~~ 553 (559)
+.+|+|+|+.||.
T Consensus 462 ~~PETkg~tLeei 474 (491)
T 4gc0_A 462 FVPETKGKTLEEL 474 (491)
T ss_dssp HCCCCTTCCHHHH
T ss_pred eecCCCCCCHHHH
Confidence 8899999988763
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=1.1e-38 Score=321.92 Aligned_cols=397 Identities=14% Similarity=0.042 Sum_probs=295.3
Q ss_pred HHHHHHHHHHHhhhhhhhccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHH
Q 008624 100 ILPFLFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIA 179 (559)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~ 179 (559)
+..+...+++.+..+++...+.+.++.+.++ + .+..+.|++.+++.++..++++++|+++||+|||++++++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~ 98 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-------G-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAG 98 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSS-------T-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------h-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHH
Confidence 3345556666777888888888888888777 8 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh----hcchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhh
Q 008624 180 AVLYALGALTTAY----APGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQ 255 (559)
Q Consensus 180 ~~~~~i~~~~~~~----~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l 255 (559)
.++.+++.+++++ +++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+.++|.++||.+++.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 178 (451)
T 1pw4_A 99 LILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 178 (451)
T ss_dssp HHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCCcc-hHHHHHhhhHHHHHHHHHH-hccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHH
Q 008624 256 INAVGG-WRYMYGLSAPLALLMGIGM-WSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTL 333 (559)
Q Consensus 256 ~~~~~~-wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (559)
.+.. + ||+.|++.++++++..++. +++||+|+....++.+ +.+...+. +.
T Consensus 179 ~~~~-g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~--~~-- 230 (451)
T 1pw4_A 179 MAWF-NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIE-----------------------EYKNDYPD--DY-- 230 (451)
T ss_dssp HHHT-CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCT-----------------------TTCCC---------
T ss_pred HHHh-ccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChh-----------------------hhcccccc--cc--
Confidence 7766 7 9999999998887766544 6688876521110000 00000000 00
Q ss_pred HHhhhcccccccccchhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHH-cCCCCchhHHHHHHHHHHHHHHH
Q 008624 334 VSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVM 412 (559)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 412 (559)
++ +.+.+....+...++.++++.++...+..++..+.. .....+.|.++++ .+.+. ...+.......++.+++
T Consensus 231 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~ 304 (451)
T 1pw4_A 231 NE-KAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLR----YGILDWSPTYLKEVKHFAL-DKSSWAYFLYEYAGIPG 304 (451)
T ss_dssp ---------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHH----HHHHHHHHHHBTTBSCCCH-HHHHHHHHHHHHHHHHH
T ss_pred hh-hhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHH
Confidence 00 000000111111356677776666555444444333 3466788888877 67766 78899999999999999
Q ss_pred HHHHHHHhhhc--CCchhhhhhhHHHH-HHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchh
Q 008624 413 TWIAVAKVDDL--GRRPLLIGGVCGIA-LSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTR 489 (559)
Q Consensus 413 ~~~~g~l~d~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 489 (559)
.++.+++.||+ ++|+.+..+..+.. ++++++... ...+.+......++.+.+. ....+....+..|.+|++.|
T Consensus 305 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~ 380 (451)
T 1pw4_A 305 TLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN---PAGNPTVDMICMIVIGFLI-YGPVMLIGLHALELAPKKAA 380 (451)
T ss_dssp HHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC---CTTCHHHHHHHHHHHHHHH-THHHHHHHHHHHHTSCTTHH
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh---cccCHHHHHHHHHHHHHHH-hchHHHHHHHHHHHhchhhh
Confidence 99999999999 99988777666555 444433321 1112333333333333333 33344555788999999999
Q ss_pred hhHHHHHHHHHHH-HHHHHHHhhHHhHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 008624 490 GRGISLAVLTNFG-SNAIVTFAFSPLKVFIHFSIKMVSTWFMILLFDWLVQFCR 542 (559)
Q Consensus 490 ~~~~g~~~~~~~~-g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 542 (559)
+++.|+.+...++ |..++|.+.|.+.+..|+...+...+++.++..++.+...
T Consensus 381 g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 381 GTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 9999999999999999988888777766665555554443
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=2.7e-37 Score=310.51 Aligned_cols=362 Identities=16% Similarity=0.110 Sum_probs=282.9
Q ss_pred HHHHHHHhhhhhhhccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHH
Q 008624 104 LFPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLY 183 (559)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~ 183 (559)
.++++..+..+++.....+.+|.+.++ +|++..+.|++.+++.+++.++.+++|+++||+|||++++++.++.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~ 101 (438)
T 3o7q_A 29 ALLCSLFFLWAVANNLNDILLPQFQQA-------FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY 101 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------SCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHH
Confidence 344555677777777888888887766 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH---HhhcchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhc-CCC
Q 008624 184 ALGALTT---AYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQI-NAV 259 (559)
Q Consensus 184 ~i~~~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~-~~~ 259 (559)
+++.+++ +++++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+.++|.++++.+++.+. +..
T Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 181 (438)
T 3o7q_A 102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV 181 (438)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSS
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999 889999999999999999999999999999999999999999999999999999999999999988 554
Q ss_pred cc------------------------hHHHHHhhhHHHHHHHHHHhc--cCCchHHHHHHhhcCCCchhhHHHHHHHHHH
Q 008624 260 GG------------------------WRYMYGLSAPLALLMGIGMWS--LPPSPRWLLLRAVQGKGSLQEYKEQAISALG 313 (559)
Q Consensus 260 ~~------------------------wr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (559)
+. ||+.|++.+++.++..++.++ .||+++.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~------------------------ 237 (438)
T 3o7q_A 182 PHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD------------------------ 237 (438)
T ss_dssp CCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT------------------------
T ss_pred ccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc------------------------
Confidence 23 999998888777666555443 3443320
Q ss_pred hhccCCCCCcccHHHHHHHHHHhhhcccccccccchhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHH-HHHc-C
Q 008624 314 KLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPI-LQSA-G 391 (559)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~ 391 (559)
.++ +.++.+.+.+++++++++.++...+..++..... .....+.|.+ +++. +
T Consensus 238 ---~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g 291 (438)
T 3o7q_A 238 ---NHS-------------------DAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQ----TACWSYLIRYAVEEIPG 291 (438)
T ss_dssp ---CCC-------------------CSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHSTT
T ss_pred ---ccc-------------------cccccchhhhHHHHHhChHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhccCC
Confidence 000 0011122234667888888777766555544433 3366778888 7776 7
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcc
Q 008624 392 FSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQIS 471 (559)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (559)
.+. ..++.......++.+++.++.+++.||++||+.+..+.++.+++++++... ...+ .+...++.+.+.+ .
T Consensus 292 ~~~-~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~g~~~~-~ 363 (438)
T 3o7q_A 292 MTA-GFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA-----GGHV-GLIALTLCSAFMS-I 363 (438)
T ss_dssp CCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-----CHHH-HHHHHHHHHHHHT-T
T ss_pred cch-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc-----CCcH-HHHHHHHHHHHHH-H
Confidence 766 788999999999999999999999999999999988888777776665542 2222 2333334443433 3
Q ss_pred cccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHhhh-hhHHHHHHHHHHH
Q 008624 472 FGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFIH-FSIKMVSTWFMIL 532 (559)
Q Consensus 472 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g-~~~~~~~~~~~~~ 532 (559)
..+..+.+..|.+|++ ++.+.++.. ...+|+.++|.+.|.+.+..| +...+.+.+++.+
T Consensus 364 ~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~ 423 (438)
T 3o7q_A 364 QYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFA 423 (438)
T ss_dssp HHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHH
T ss_pred HHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 4456667878888865 888888877 677999999999999999999 7777665544433
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=100.00 E-value=1.3e-32 Score=280.54 Aligned_cols=397 Identities=12% Similarity=0.034 Sum_probs=251.7
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhh-hchhHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhh
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADF-LGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHG 216 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr-~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 216 (559)
+|++..+.+++.+++.++..++++++|+++|| +|||++++.+.++.+++.++++++++++.++++|+++|++.+...+.
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 128 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPN 128 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccch
Confidence 89999999999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred HhHHHhhcCCCCc--cchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHhcc-CCchHHHHHH
Q 008624 217 APLYIAETCPSQI--RGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSL-PPSPRWLLLR 293 (559)
Q Consensus 217 ~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~e~p~~~~~~ 293 (559)
..+++.|++|+++ |+.++++++.+.++|..++|.+++.+.+.. +||+.|++.++..++..++.++. ++.. ..+
T Consensus 129 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-g~~~~f~~~~~~~~~~~~~~~~~~~~~~---~~~ 204 (491)
T 4aps_A 129 VSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA-GYHVAFSLAAIGMFIGLLVYYFGGKKTL---DPH 204 (491)
T ss_dssp HHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHHHHTTC---CSC
T ss_pred HHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHhCcccc---ccc
Confidence 9999999999988 777888899999999999999999998877 99999999887776665554432 1110 000
Q ss_pred hhcCCCchhhHHHHHHHHHHh----------------hccCCCCCcccHHHHHHHH-HHhh-hcccccccccchhhhccC
Q 008624 294 AVQGKGSLQEYKEQAISALGK----------------LRRRPPGDKLSERQIEDTL-VSLK-SSYTDEKSEGSFLEVFQG 355 (559)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~ 355 (559)
. .+.+.+.+.++.++..+. ..+..+.++.......... .... .....+.......+..+.
T Consensus 205 ~--~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (491)
T 4aps_A 205 Y--LRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRV 282 (491)
T ss_dssp C--SCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------C
T ss_pred c--cCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 0 001111111121221111 1111111111000000000 0000 000000000001111111
Q ss_pred CchhHHHHHHHHHHHHHhhCcchhhhchHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhh----
Q 008624 356 PNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLI---- 430 (559)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~---- 430 (559)
.......+...+..... .....+.+.+.++ .+.+. ...+.......++.+++.++.+++.||++||+...
T Consensus 283 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~ 357 (491)
T 4aps_A 283 VSYIPLFIAAVLFWAIE----EQGSVVLATFAAERVDSSW-FPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKF 357 (491)
T ss_dssp TTHHHHHHHHHHHHHHH----GGGGTHHHHHHHHSCCCSS-SCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHH
T ss_pred HHHHHHHHHHHHHHHHH----hhccHHHHHHHHHHhccCc-cCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHH
Confidence 11222222222222222 3345556666665 34443 56777778888889999999999999999986654
Q ss_pred -hhhHHHHHHHHHHHHHHhhc----CchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHH
Q 008624 431 -GGVCGIALSLLLLSAYYKIL----GGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNA 505 (559)
Q Consensus 431 -~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~ 505 (559)
.+.++.+++++++....... ....+......++.+.+. ....+....+..|.+|++.|+++.|+.+...++|.+
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ 436 (491)
T 4aps_A 358 AVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGE-MLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSA 436 (491)
T ss_dssp HHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHH-HTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHH-HHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 56666666665555432111 112333333333333333 344456668999999999999999999999999999
Q ss_pred HHHHhhHHhHHhhhhhHHHHHHHHHHHHHHHHHHHhhccccc
Q 008624 506 IVTFAFSPLKVFIHFSIKMVSTWFMILLFDWLVQFCRSCWEQ 547 (559)
Q Consensus 506 i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (559)
+++.+.+.+.+. ++...+...+++.++..++.+.+.++.++
T Consensus 437 i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 437 LNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKRIQG 477 (491)
T ss_dssp HHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998887654 55555555555555555544444444433
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=100.00 E-value=4.3e-34 Score=280.83 Aligned_cols=356 Identities=14% Similarity=0.085 Sum_probs=270.0
Q ss_pred HHHHHHhhhhhhhccccccccccCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHH
Q 008624 105 FPALGGLLFGYDIGATSGATISLQSPELSGTTWFNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYA 184 (559)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~ 184 (559)
++++..+..+++...+.+.++.+.++ +|.+..+.+++.+++.++..++++++|+++||+|||++++.+.++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 76 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARD-------LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFM 76 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-------SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence 34455566777777888888877766 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHH
Q 008624 185 LGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRY 264 (559)
Q Consensus 185 i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~ 264 (559)
++.++++++++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++.+.+.. +||+
T Consensus 77 ~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~ 155 (375)
T 2gfp_A 77 LATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMW-NWRA 155 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHH-HHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc-cHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988876 9999
Q ss_pred HHHhhhHHHHHHHH-HHhccCCchHHHHHHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhccccc
Q 008624 265 MYGLSAPLALLMGI-GMWSLPPSPRWLLLRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDE 343 (559)
Q Consensus 265 ~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (559)
.|++.+++.++..+ ..+++||+++.. .+++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------~~~~ 186 (375)
T 2gfp_A 156 CYLFLLVLCAGVTFSMARWMPETRPVD-------------------------------------------------APRT 186 (375)
T ss_dssp HHHHHHHHHHHHHCCCCCSSCCCSTTT-------------------------------------------------CCCC
T ss_pred HHHHHHHHHHHHHHHHHHHCcccCCCC-------------------------------------------------cccc
Confidence 99998888877766 335677754310 0001
Q ss_pred ccccchhhhccCCchhHHHHHHHHHHHHHhhCcchhhhchHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008624 344 KSEGSFLEVFQGPNLKAFIIGGGLVLFQQITGQPSVLYYAGPILQS-AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD 422 (559)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 422 (559)
+.+.++++.+|+|.++...+..++...... ....+.|.++++ .+.+. ...+.......++.+++.++.+++.||
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~-~~~g~~~~~~~~~~~~~~~~~~~l~~r 261 (375)
T 2gfp_A 187 RLLTSYKTLFGNSGFNCYLLMLIGGLAGIA----AFEACSGVLMGAVLGLSS-MTVSILFILPIPAAFFGAWFAGRPNKR 261 (375)
T ss_dssp CTTTCSTHHHHHHHHHHHHHHHHHHHHHHH----HHHHHCSCSSHHHHHHHH-HHHHHHHHTHHHHHHHHHHHHHTTTTH
T ss_pred cHHHHHHHHhcCcchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123345677777766666555444444333 355566666655 56655 678889999999999999999999999
Q ss_pred cCCchhhhhhhHH-HHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHH
Q 008624 423 LGRRPLLIGGVCG-IALSLLLLSAYYKILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNF 501 (559)
Q Consensus 423 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 501 (559)
.+++ ...+... ...+...+..... ...+.+......++.+.+.+. ..+....+..|..| ++|+++.|+.+...+
T Consensus 262 ~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~ 336 (375)
T 2gfp_A 262 FSTL--MWQSVICCLLAGLLMWIPDWF-GVMNVWTLLVPAALFFFGAGM-LFPLATSGAMEPFP-FLAGTAGALVGGLQN 336 (375)
T ss_dssp HHHH--HHHHHHHHHHTSSSSSHHHHH-HHHHHHHHHHHHHHHHHHHHH-TSSTTHHHHHTHHH-HHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHhhh-ccccHHHHHHHHHHHHHHHHH-hhHHHHHHHHHhCC-cccchHHHHHHHHHH
Confidence 8772 2222222 2222221111110 011233333334444444433 34566688889988 899999999999999
Q ss_pred HHHHHHHHhhHHhHHhhhhhHHHHHH
Q 008624 502 GSNAIVTFAFSPLKVFIHFSIKMVST 527 (559)
Q Consensus 502 ~g~~i~~~~~g~~~~~~g~~~~~~~~ 527 (559)
+|..++|.+.|.+.+..++...+...
T Consensus 337 ~g~~~~~~~~g~l~~~~~~~~~~~~~ 362 (375)
T 2gfp_A 337 IGSGVLASLSAMLPQTGQGSLGLLMT 362 (375)
T ss_dssp HHHHCCSTTCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 99999999999998887776665543
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.96 E-value=5.7e-30 Score=254.60 Aligned_cols=356 Identities=13% Similarity=0.063 Sum_probs=225.6
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHH---HHHHhhcch-hhHHHHHHHHhHHHHhh
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGA---LTTAYAPGL-GVLLVGRLLYGLGIGLA 213 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~---~~~~~~~~~-~~l~~~r~l~G~~~g~~ 213 (559)
+|++..+.|++.+.+.++..++++++|+++||+|||++++++..+++++. ..+.+++.. ..++..+++.|++.+..
T Consensus 38 ~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 117 (417)
T 2cfq_A 38 NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFC 117 (417)
T ss_dssp TCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999888776532 222233221 12445566666555544
Q ss_pred hhhHhHHHhhcCCC--CccchhhhHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHhccCCchHHHH
Q 008624 214 MHGAPLYIAETCPS--QIRGTLISLKELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSLPPSPRWLL 291 (559)
Q Consensus 214 ~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~ 291 (559)
.+.....+.++.++ ++|+...+.......+|..++|.+++++.+ . +||+.|++.++..++..+..++.+|+++.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~-~~~~~f~~~~~~~~~~~~~~~~~~~~~~~-- 193 (417)
T 2cfq_A 118 FNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-I-NNQFVFWLGSGCALILAVLLFFAKTDAPS-- 193 (417)
T ss_dssp HHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-H-CSHHHHTTTTTTTTTHHHHSCSSCCCCSC--
T ss_pred HhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-h-chhHHHHHHHHHHHHHHHHHHHcCccccc--
Confidence 44444444444432 456777788877888999999999998876 3 79999998887766555555555443210
Q ss_pred HHhhcCCCchhhHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHhhhcccccccccchhhhccCCchhHHHHHHHHHHHH
Q 008624 292 LRAVQGKGSLQEYKEQAISALGKLRRRPPGDKLSERQIEDTLVSLKSSYTDEKSEGSFLEVFQGPNLKAFIIGGGLVLFQ 371 (559)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (559)
+.+ .++ .++ ...++....+++++++++.++...+........
T Consensus 194 ------~~~----------------~~~-~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (417)
T 2cfq_A 194 ------SAT----------------VAN-AVG---------------ANHSAFSLKLALELFRQPKLWFLSLYVIGVSCT 235 (417)
T ss_dssp ------SSC----------------SSS-SSS---------------SCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ------ccc----------------ccc-ccc---------------cccccccHHHHHHHhcCCchhhHHHHHHHHHHH
Confidence 000 000 000 000001112345667777665544432222221
Q ss_pred HhhCcchhhhchHHHHHHcCCC---CchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHh
Q 008624 372 QITGQPSVLYYAGPILQSAGFS---AAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYK 448 (559)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (559)
. .....+.|.++.+.... .....+.......++.+++.++.+++.||++||+.+..+..+.+++.+++..
T Consensus 236 ~----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~--- 308 (417)
T 2cfq_A 236 Y----DVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF--- 308 (417)
T ss_dssp H----HHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT---
T ss_pred H----HHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH---
Confidence 1 12333456665543211 1134567777777888899999999999999999888777776665544432
Q ss_pred hcCchhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHH-HHHHHHHHHHHHHhhHHhHHhhhhhHHHHHH
Q 008624 449 ILGGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLA-VLTNFGSNAIVTFAFSPLKVFIHFSIKMVST 527 (559)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~ 527 (559)
..+.+..+...++...+.. ...+..+.+..|.+|++.|+++.++. +....+|++++|.+.|.+.+..|+...+...
T Consensus 309 --~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~ 385 (417)
T 2cfq_A 309 --ATSALEVVILKTLHMFEVP-FLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVL 385 (417)
T ss_dssp --CCSHHHHHHHTTHHHHHHH-HHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHH
T ss_pred --hccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHH
Confidence 1223333222222222222 22223357889999999999999995 7888899999999999999988877777766
Q ss_pred HHHHHHHHHHHHHhhccc
Q 008624 528 WFMILLFDWLVQFCRSCW 545 (559)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~ 545 (559)
+++.++..++.+...+++
T Consensus 386 ~~~~l~~~~~~~~~~~~~ 403 (417)
T 2cfq_A 386 GLVALGFTLISVFTLSGP 403 (417)
T ss_dssp HHHHHHHHHHHTTSSCCS
T ss_pred HHHHHHHHHHHHhhhcCC
Confidence 666665555544444433
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.95 E-value=2.4e-27 Score=243.64 Aligned_cols=142 Identities=15% Similarity=0.209 Sum_probs=132.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHhhh-chhHHHHHHHHHHHHHHHHHHhhc-chhhHHHHHHHHhHHHHhhhhhH
Q 008624 140 LSAVQLGLVVSGSLYGALLGSILVYSIADFL-GRKRELIIAAVLYALGALTTAYAP-GLGVLLVGRLLYGLGIGLAMHGA 217 (559)
Q Consensus 140 ~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~-Grr~~~~~~~~~~~i~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~ 217 (559)
++..+.+++.+++.++..++.+++|+++||+ |||++++++.++.+++.+++++++ +++.++++|++.|++.+...+..
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV 130 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH
Confidence 9999999999999999999999999999999 999999999999999999999999 99999999999999999999999
Q ss_pred hHHHhhcCCCCccchhhhH---HHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHhc
Q 008624 218 PLYIAETCPSQIRGTLISL---KELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWS 282 (559)
Q Consensus 218 ~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~ 282 (559)
.+++.|++|+++|+++.+. .+.+.++|.++||.+++.+.+.. +||+.|++.+++.++..+..++
T Consensus 131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF-GAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS-CHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999877666 89999999999999999988877 9999999988887766665544
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.51 E-value=2.6e-13 Score=136.14 Aligned_cols=145 Identities=14% Similarity=0.131 Sum_probs=129.2
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhh--chhHHHHHHHHHHH-HHHHHHHhh--cchhhHHHHHHHHhHHHHh
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFL--GRKRELIIAAVLYA-LGALTTAYA--PGLGVLLVGRLLYGLGIGL 212 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~--Grr~~~~~~~~~~~-i~~~~~~~~--~~~~~l~~~r~l~G~~~g~ 212 (559)
+|.+..+.+++.+.+.++..++.++.|++.||+ |||+.+..+..+.. ++.++..+. .+.+.+.+..++.|++.+.
T Consensus 283 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 362 (451)
T 1pw4_A 283 KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYG 362 (451)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhc
Confidence 789999999999999999999999999999999 99999888877776 666666665 3677888888999999998
Q ss_pred hhhhHhHHHhhcCCCCccchhhhHHHHHHHH-HHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHhcc
Q 008624 213 AMHGAPLYIAETCPSQIRGTLISLKELFIVL-GILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMWSL 283 (559)
Q Consensus 213 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 283 (559)
..+....++.|.+|+++|++++++.+....+ |..++|.+.+.+.+.. +|+..|++.+++.++..++.+++
T Consensus 363 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 363 PVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF-GWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-CSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999 9999999999999987 89999999888888777666544
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.41 E-value=1.3e-12 Score=129.45 Aligned_cols=146 Identities=14% Similarity=0.156 Sum_probs=125.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHhHHHHhhhhhHhH
Q 008624 140 LSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAPGLGVLLVGRLLYGLGIGLAMHGAPL 219 (559)
Q Consensus 140 ~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~ 219 (559)
.+....+++.++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....
T Consensus 256 ~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 335 (417)
T 2cfq_A 256 QGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFK 335 (417)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888999999999999999999999999999888888888888888888888888888888777777889
Q ss_pred HHhhcCCCCccchhhhH-HHHHHHHHHHHHHHHhhhhcCCCcchHHHHHhhhHHHHHHHHHHh-ccCCc
Q 008624 220 YIAETCPSQIRGTLISL-KELFIVLGILLGYFVGSFQINAVGGWRYMYGLSAPLALLMGIGMW-SLPPS 286 (559)
Q Consensus 220 ~i~~~~~~~~r~~~~~~-~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~e~ 286 (559)
++.|.+|++.|+.+.++ ++....+|.+++|.+++.+.+.. +++..|.+.++++++..++.+ +.+|.
T Consensus 336 ~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~-g~~~~f~~~~~~~l~~~~~~~~~~~~~ 403 (417)
T 2cfq_A 336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI-GFQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp HHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS-HHHHHHHHHHHHHHHHHHHHTTSSCCS
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc-CcHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 99999999999999998 47888899999999999988876 899999998888887776654 45554
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.37 E-value=8.4e-12 Score=124.56 Aligned_cols=139 Identities=12% Similarity=-0.042 Sum_probs=109.9
Q ss_pred chhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHH
Q 008624 377 PSVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLV 456 (559)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (559)
.......|.+.++.+.+. .+.+++.....++..++.++.|+++||+|||+.+..+.++.+++.+++..... ..+.+.
T Consensus 43 ~~~~~~~~~~~~~~g~s~-~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~--~~~~~~ 119 (438)
T 3o7q_A 43 NLNDILLPQFQQAFTLTN-FQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE--IMNYTL 119 (438)
T ss_dssp HHHHHHHHHHHHHSCCCS-HHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH--TTCHHH
T ss_pred HhHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccc--cccHHH
Confidence 456666788888899887 88999999999999999999999999999999999999999888887743221 133344
Q ss_pred HHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhH-Hhhh
Q 008624 457 AVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLK-VFIH 519 (559)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~-~~~g 519 (559)
.++..++.+.+.+ ...+....++.|.+|+++|+.+.++.+....+|..+++.+.+.+. +..+
T Consensus 120 l~~~~~l~G~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~ 182 (438)
T 3o7q_A 120 FLVGLFIIAAGLG-CLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVP 182 (438)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSC
T ss_pred HHHHHHHHHhhHH-HhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4444444444443 344455688999999999999999999999999999999999988 4443
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.30 E-value=2.7e-11 Score=122.86 Aligned_cols=157 Identities=13% Similarity=0.060 Sum_probs=119.9
Q ss_pred hhhhchHHHHHH------cCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhh-cCCchhhhhhhHHHHHHHHHHHHHHhhc
Q 008624 378 SVLYYAGPILQS------AGFSAAADATRVSVVIGVFKLVMTWIAVAKVDD-LGRRPLLIGGVCGIALSLLLLSAYYKIL 450 (559)
Q Consensus 378 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (559)
....+.+.++++ .+.+. .+.+++.....++..++.++.|+++|| +|||+.+..+.++.+++.+++...
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~---- 105 (491)
T 4aps_A 31 GMRAILLYYMWFLISTGDLHITR-ATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALP---- 105 (491)
T ss_dssp HHHHHHHHHHHHHHHHTSCCSCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSC----
T ss_pred HHHHHHHHHHHhccchhhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHh----
Confidence 344556666654 67776 889999999999999999999999999 899999999988888887776542
Q ss_pred CchhHHHHHHHHHHHHHhhcccccccceeecccCCcch--hhhHHHHHHHHHHHHHHHHHHhhHHhHHhhhhhHHHHHHH
Q 008624 451 GGFPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRT--RGRGISLAVLTNFGSNAIVTFAFSPLKVFIHFSIKMVSTW 528 (559)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~ 528 (559)
++.+..++..++.+.+.+ ...+...+++.|.+|+++ |+.+.++.+....+|..++|.+.+.+.+..||.+.+.+.+
T Consensus 106 -~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~ 183 (491)
T 4aps_A 106 -FGASALFGSIILIIIGTG-FLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAA 183 (491)
T ss_dssp -CSTTHHHHHHHHHHHHHH-HHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred -hhHHHHHHHHHHHHHHHH-hccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 334444444444444333 344556688999999888 7778888899999999999999999999999999888776
Q ss_pred HHHHHHHHHHHHh
Q 008624 529 FMILLFDWLVQFC 541 (559)
Q Consensus 529 ~~~~~~~~~~~~~ 541 (559)
+..++..++....
T Consensus 184 ~~~~~~~~~~~~~ 196 (491)
T 4aps_A 184 IGMFIGLLVYYFG 196 (491)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 6555554444433
No 12
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.30 E-value=6.4e-12 Score=122.64 Aligned_cols=160 Identities=11% Similarity=0.007 Sum_probs=122.6
Q ss_pred hhhhchHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHHHHHHhhcCchhHHH
Q 008624 378 SVLYYAGPILQSAGFSAAADATRVSVVIGVFKLVMTWIAVAKVDDLGRRPLLIGGVCGIALSLLLLSAYYKILGGFPLVA 457 (559)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (559)
......|.+.++.+.+. .+.++......++..++.++.|+++||+|||+.+..+..+..++.+++... ++.+..
T Consensus 18 ~~~~~~~~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~l 91 (375)
T 2gfp_A 18 IYIPAIADMARDLNVRE-GAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT-----SSLTVL 91 (375)
T ss_dssp HHHHHHHHHHTTSSSTT-HHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH-----HHHHHH
T ss_pred HHhhhhHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh-----ccHHHH
Confidence 35556677778888887 789999999999999999999999999999999999999888888877663 223333
Q ss_pred HHHHHHHHHHhhcccccccceeecccCCcchhhhHHHHHHHHHHHHHHHHHHhhHHhHHhhhhhHHHHHHHHHHHHHHHH
Q 008624 458 VSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKVFIHFSIKMVSTWFMILLFDWL 537 (559)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 537 (559)
+...++.+ .......+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..||...+...++..++..++
T Consensus 92 ~~~~~l~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 170 (375)
T 2gfp_A 92 IAASAMQG-MGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFS 170 (375)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHH-HHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 33333333 33333445666888999999999999999999999999999999999999889888887666655544443
Q ss_pred HHHhhcc
Q 008624 538 VQFCRSC 544 (559)
Q Consensus 538 ~~~~~~~ 544 (559)
.....++
T Consensus 171 ~~~~~~~ 177 (375)
T 2gfp_A 171 MARWMPE 177 (375)
T ss_dssp CCCSSCC
T ss_pred HHHHCcc
Confidence 3333333
No 13
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.23 E-value=2.3e-10 Score=117.05 Aligned_cols=153 Identities=9% Similarity=-0.011 Sum_probs=115.8
Q ss_pred hhhchHHHHH-HcC------CCCchhHHHHHHHHHHHHHHHHHHHHHHhhhc-CCchhhhhhhHHHHHHHHHHHHHHhhc
Q 008624 379 VLYYAGPILQ-SAG------FSAAADATRVSVVIGVFKLVMTWIAVAKVDDL-GRRPLLIGGVCGIALSLLLLSAYYKIL 450 (559)
Q Consensus 379 ~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (559)
...+.+.++. +.+ .+. .+.+++.....++..++.++.|+++||+ |||+.+..+.++.+++.+++...
T Consensus 31 ~~~~l~~~l~~~~~~~~~~~~s~-~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~---- 105 (524)
T 2xut_A 31 MRNILTPFLMTALLLSIPEELRG-AVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF---- 105 (524)
T ss_dssp HHHHHHHHHHHSCSSCCSSSTTT-TTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHhccccccccCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh----
Confidence 4455666654 466 666 7899999999999999999999999999 99999999888888887776652
Q ss_pred Cc-hhHHHHHHHHHHHHHhhcccccccceeecccCCcchhhhHHHH---HHHHHHHHHHHHHHhhHHhHHhhhhhHHHHH
Q 008624 451 GG-FPLVAVSALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISL---AVLTNFGSNAIVTFAFSPLKVFIHFSIKMVS 526 (559)
Q Consensus 451 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~---~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~ 526 (559)
. +.+..++..++.+.+. ....+...+++.|.+|+++|+++.+. .+...++|..++|.+.+.+.+..||.+.+.+
T Consensus 106 -~~~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~ 183 (524)
T 2xut_A 106 -EHSVQGFYTGLFLIALGS-GGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGI 183 (524)
T ss_dssp -SSCHHHHHHHHHHHHHHH-HTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHH
T ss_pred -cccHHHHHHHHHHHHHhc-cccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 2 3344444444444333 34445666889999999999776666 8888999999999999999999999888877
Q ss_pred HHHHHHHHHHHH
Q 008624 527 TWFMILLFDWLV 538 (559)
Q Consensus 527 ~~~~~~~~~~~~ 538 (559)
.+++.++..++.
T Consensus 184 ~~~~~~~~~~~~ 195 (524)
T 2xut_A 184 PGVLMFVATVFF 195 (524)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666655444443
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.13 E-value=2.4e-10 Score=115.79 Aligned_cols=150 Identities=18% Similarity=0.032 Sum_probs=109.2
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhc----chhhHHHHHH-HHhHHHHh
Q 008624 138 FNLSAVQLGLVVSGSLYGALLGSILVYSIADFLGRKRELIIAAVLYALGALTTAYAP----GLGVLLVGRL-LYGLGIGL 212 (559)
Q Consensus 138 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~----~~~~l~~~r~-l~G~~~g~ 212 (559)
.+.+............+...++.++.+++.||+|||+.++.+.....++.+..+... ..+..++.-+ ..+.....
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (491)
T 4gc0_A 307 LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMS 386 (491)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred cCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhH
Confidence 455666777777778888999999999999999999999999888888776655421 1122222222 22222223
Q ss_pred hhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHHHHHHhhhhcCCC-----cchHHHHHhhhHHHHHHHHHH-hccCCc
Q 008624 213 AMHGAPLYIAETCPSQIRGTLISLKELFIVLGILLGYFVGSFQINAV-----GGWRYMYGLSAPLALLMGIGM-WSLPPS 286 (559)
Q Consensus 213 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~~~~~l~~~~-----~~wr~~f~~~~~~~~~~~~~~-~~~~e~ 286 (559)
..++...+.+|.+|.+.|++++|+......+|.++++.+.+.+.+.. .++.+.|++.++++++..+.. +++||+
T Consensus 387 ~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET 466 (491)
T 4gc0_A 387 WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET 466 (491)
T ss_dssp TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence 45677889999999999999999999999999999888776654321 145567888888887777655 678997
Q ss_pred h
Q 008624 287 P 287 (559)
Q Consensus 287 p 287 (559)
.
T Consensus 467 k 467 (491)
T 4gc0_A 467 K 467 (491)
T ss_dssp T
T ss_pred C
Confidence 5
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=68.88 E-value=3 Score=20.38 Aligned_cols=14 Identities=29% Similarity=0.301 Sum_probs=11.6
Q ss_pred HHHHHHhhhchhHH
Q 008624 162 LVYSIADFLGRKRE 175 (559)
Q Consensus 162 ~~G~l~dr~Grr~~ 175 (559)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46899999999864
No 16
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=35.59 E-value=2.9e+02 Score=26.14 Aligned_cols=35 Identities=3% Similarity=-0.286 Sum_probs=19.5
Q ss_pred hhhhHhHHHhhcCCCCccchhhhHHHHHHHHHHHH
Q 008624 213 AMHGAPLYIAETCPSQIRGTLISLKELFIVLGILL 247 (559)
Q Consensus 213 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~ 247 (559)
............+..++|.+...+......+-.++
T Consensus 141 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~ 175 (460)
T 3mkt_A 141 PAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIP 175 (460)
T ss_dssp HHHHHHHHHTTTTCTTSCCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 33344444556666667777766666555544443
No 17
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=27.43 E-value=1.2e+02 Score=25.28 Aligned_cols=25 Identities=16% Similarity=0.033 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchh
Q 008624 149 VSGSLYGALLGSILVYSIADFLGRK 173 (559)
Q Consensus 149 ~s~~~l~~~i~~~~~G~l~dr~Grr 173 (559)
+.-|.+|+.++..+.|++.||..++
T Consensus 99 TgGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 99 SGGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccc
Confidence 3457788889999999999987643
Done!