Query 008626
Match_columns 559
No_of_seqs 381 out of 2404
Neff 5.2
Searched_HMMs 46136
Date Thu Mar 28 14:32:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008626.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008626hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03162 golden-2 like transcr 100.0 4.4E-70 9.6E-75 556.3 21.4 238 312-552 230-524 (526)
2 COG4566 TtrR Response regulato 99.8 1E-20 2.2E-25 182.1 13.6 159 15-176 2-174 (202)
3 COG0745 OmpR Response regulato 99.8 5E-20 1.1E-24 183.6 15.6 115 18-136 1-120 (229)
4 TIGR01557 myb_SHAQKYF myb-like 99.8 4.4E-20 9.6E-25 146.9 6.0 55 317-371 1-56 (57)
5 COG2204 AtoC Response regulato 99.8 3.1E-18 6.7E-23 185.3 16.4 118 16-136 3-124 (464)
6 COG4753 Response regulator con 99.8 3E-18 6.5E-23 185.4 13.9 118 17-137 1-125 (475)
7 COG2197 CitB Response regulato 99.8 4.6E-18 9.9E-23 167.2 14.0 157 18-177 1-181 (211)
8 PF00072 Response_reg: Respons 99.7 4.5E-17 9.7E-22 139.7 14.8 107 20-129 1-112 (112)
9 COG4565 CitB Response regulato 99.7 2.2E-17 4.8E-22 161.8 14.1 116 18-136 1-122 (224)
10 PRK10840 transcriptional regul 99.7 2.1E-16 4.7E-21 152.7 14.8 158 16-176 2-182 (216)
11 PRK10046 dpiA two-component re 99.7 2.1E-15 4.7E-20 147.4 17.0 120 14-136 1-126 (225)
12 PRK09483 response regulator; P 99.7 2.3E-15 4.9E-20 142.7 16.2 147 17-166 1-168 (217)
13 TIGR02154 PhoB phosphate regul 99.6 8.4E-15 1.8E-19 138.4 17.9 141 17-160 2-168 (226)
14 PRK10643 DNA-binding transcrip 99.6 9.4E-15 2E-19 138.1 18.2 139 18-159 1-162 (222)
15 COG3437 Response regulator con 99.6 1.4E-15 3E-20 158.6 13.6 117 16-135 13-136 (360)
16 PRK11083 DNA-binding response 99.6 7E-15 1.5E-19 139.5 17.1 143 16-161 2-169 (228)
17 COG0784 CheY FOG: CheY-like re 99.6 7.9E-15 1.7E-19 128.7 16.2 115 15-132 3-124 (130)
18 PRK10529 DNA-binding transcrip 99.6 9E-15 1.9E-19 139.7 16.9 114 18-134 2-118 (225)
19 PRK10336 DNA-binding transcrip 99.6 1E-14 2.2E-19 137.9 16.8 141 18-161 1-164 (219)
20 PRK10360 DNA-binding transcrip 99.6 1.6E-14 3.5E-19 134.8 17.5 145 17-164 1-155 (196)
21 PRK11173 two-component respons 99.6 1.1E-14 2.4E-19 141.2 16.8 116 17-135 3-121 (237)
22 PRK11517 transcriptional regul 99.6 2E-14 4.3E-19 136.5 17.9 141 18-161 1-162 (223)
23 PRK10161 transcriptional regul 99.6 2.1E-14 4.5E-19 137.8 18.2 140 18-160 3-168 (229)
24 PLN03029 type-a response regul 99.6 2.3E-14 4.9E-19 141.6 18.9 119 17-136 8-150 (222)
25 PRK10816 DNA-binding transcrip 99.6 1.2E-14 2.7E-19 138.8 16.3 114 18-134 1-118 (223)
26 PRK10955 DNA-binding transcrip 99.6 2.9E-14 6.4E-19 136.2 18.4 114 18-135 2-118 (232)
27 PRK09958 DNA-binding transcrip 99.6 2E-14 4.3E-19 135.0 16.6 143 18-163 1-160 (204)
28 PRK10766 DNA-binding transcrip 99.6 1.9E-14 4.1E-19 137.1 16.6 116 17-135 2-120 (221)
29 PRK09836 DNA-binding transcrip 99.6 2E-14 4.4E-19 137.7 16.5 114 18-134 1-118 (227)
30 TIGR03787 marine_sort_RR prote 99.6 7E-14 1.5E-18 133.7 19.3 115 19-135 2-121 (227)
31 COG4567 Response regulator con 99.6 9.5E-15 2E-19 136.7 12.5 109 19-130 11-123 (182)
32 PRK10701 DNA-binding transcrip 99.6 3.7E-14 8.1E-19 137.5 16.5 114 18-134 2-118 (240)
33 COG3706 PleD Response regulato 99.6 1.8E-14 4E-19 155.1 15.7 118 16-136 131-254 (435)
34 PRK13856 two-component respons 99.6 4.5E-14 9.8E-19 137.8 16.6 114 18-134 2-119 (241)
35 PRK09468 ompR osmolarity respo 99.6 6.3E-14 1.4E-18 135.6 16.5 115 17-134 5-123 (239)
36 TIGR01387 cztR_silR_copR heavy 99.6 1.1E-13 2.3E-18 130.5 17.3 139 20-161 1-162 (218)
37 PRK10430 DNA-binding transcrip 99.6 8.7E-14 1.9E-18 137.1 16.6 117 17-134 1-123 (239)
38 CHL00148 orf27 Ycf27; Reviewed 99.6 1.1E-13 2.4E-18 132.9 16.8 115 17-134 6-123 (240)
39 PRK09935 transcriptional regul 99.6 2.2E-13 4.7E-18 127.7 17.5 147 17-166 3-169 (210)
40 PRK15479 transcriptional regul 99.5 2.7E-13 5.8E-18 128.1 17.5 141 18-161 1-163 (221)
41 PRK10710 DNA-binding transcrip 99.5 4.4E-13 9.6E-18 128.7 18.8 140 18-160 11-174 (240)
42 PRK11475 DNA-binding transcrip 99.5 7E-14 1.5E-18 137.5 12.4 145 29-176 2-166 (207)
43 PRK15411 rcsA colanic acid cap 99.5 1.6E-13 3.5E-18 134.4 14.3 155 18-176 1-169 (207)
44 PRK10841 hybrid sensory kinase 99.5 2.1E-13 4.5E-18 159.8 17.0 117 16-135 800-920 (924)
45 PRK11107 hybrid sensory histid 99.5 2.2E-13 4.9E-18 156.7 15.8 115 16-133 666-786 (919)
46 PRK15347 two component system 99.5 2.9E-13 6.2E-18 156.1 16.7 116 15-133 688-811 (921)
47 PRK09390 fixJ response regulat 99.5 4.8E-13 1E-17 123.1 14.7 117 16-135 2-122 (202)
48 KOG0519 Sensory transduction h 99.5 1.4E-13 3E-18 158.7 13.7 117 14-132 663-784 (786)
49 PRK15369 two component system 99.5 1.3E-12 2.8E-17 120.7 17.1 148 16-166 2-169 (211)
50 PRK10651 transcriptional regul 99.5 1.3E-12 2.8E-17 122.4 17.1 147 17-166 6-175 (216)
51 TIGR02875 spore_0_A sporulatio 99.5 6.8E-13 1.5E-17 132.0 15.7 115 17-134 2-124 (262)
52 PRK11361 acetoacetate metaboli 99.5 5.5E-13 1.2E-17 143.1 16.1 117 14-133 1-121 (457)
53 PRK10923 glnG nitrogen regulat 99.5 7.5E-13 1.6E-17 143.1 17.1 115 17-134 3-121 (469)
54 PRK15115 response regulator Gl 99.5 6.3E-13 1.4E-17 142.5 16.4 116 17-135 5-124 (444)
55 PRK11697 putative two-componen 99.5 1.1E-12 2.3E-17 127.7 16.0 113 17-134 1-118 (238)
56 PRK10100 DNA-binding transcrip 99.5 4E-13 8.6E-18 132.9 12.6 143 16-166 9-175 (216)
57 PRK10365 transcriptional regul 99.5 6.2E-13 1.4E-17 141.9 14.9 116 17-135 5-124 (441)
58 PRK14084 two-component respons 99.5 1.2E-12 2.5E-17 128.5 15.6 112 18-134 1-118 (246)
59 PRK10403 transcriptional regul 99.5 2.6E-12 5.7E-17 119.9 17.2 147 17-166 6-173 (215)
60 COG3947 Response regulator con 99.5 1.7E-13 3.6E-18 139.8 9.2 112 18-134 1-116 (361)
61 PRK09581 pleD response regulat 99.4 5.4E-13 1.2E-17 140.0 13.0 114 17-134 155-274 (457)
62 PRK11466 hybrid sensory histid 99.4 9.2E-13 2E-17 152.4 15.7 118 16-135 680-801 (914)
63 TIGR02956 TMAO_torS TMAO reduc 99.4 1.2E-12 2.5E-17 152.1 15.9 114 17-133 702-822 (968)
64 PRK13435 response regulator; P 99.4 2.8E-12 6.2E-17 115.7 14.2 116 15-136 3-123 (145)
65 PRK09959 hybrid sensory histid 99.4 1.7E-12 3.7E-17 154.5 16.4 117 14-133 955-1075(1197)
66 TIGR02915 PEP_resp_reg putativ 99.4 1.8E-12 4E-17 139.0 15.0 111 20-134 1-119 (445)
67 PRK10610 chemotaxis regulatory 99.4 1.2E-11 2.6E-16 103.7 16.4 115 17-134 5-126 (129)
68 TIGR01818 ntrC nitrogen regula 99.4 2.8E-12 6E-17 138.1 15.4 112 20-134 1-116 (463)
69 PRK11091 aerobic respiration c 99.4 2.9E-12 6.3E-17 146.3 15.9 114 17-134 525-645 (779)
70 PRK09581 pleD response regulat 99.4 9.1E-12 2E-16 130.8 17.5 115 18-135 3-123 (457)
71 PRK12555 chemotaxis-specific m 99.4 4.9E-12 1.1E-16 131.7 15.3 99 18-119 1-106 (337)
72 PRK00742 chemotaxis-specific m 99.3 2E-11 4.3E-16 127.9 15.6 102 16-120 2-110 (354)
73 PRK13558 bacterio-opsin activa 99.3 1.7E-11 3.6E-16 137.7 14.3 115 17-134 7-127 (665)
74 COG2201 CheB Chemotaxis respon 99.3 3.5E-11 7.7E-16 126.6 12.5 101 17-120 1-108 (350)
75 PRK09191 two-component respons 99.2 2.2E-10 4.9E-15 112.9 14.8 113 18-134 138-254 (261)
76 cd00156 REC Signal receiver do 99.2 2.4E-10 5.1E-15 91.0 11.9 108 21-131 1-112 (113)
77 COG3707 AmiR Response regulato 99.2 1.9E-10 4E-15 111.9 12.0 117 17-136 5-125 (194)
78 PRK13837 two-component VirA-li 99.2 3E-10 6.6E-15 131.6 15.2 115 16-134 696-814 (828)
79 PRK13557 histidine kinase; Pro 99.1 2E-09 4.3E-14 115.6 14.9 117 16-133 414-534 (540)
80 PRK10693 response regulator of 99.0 2.2E-09 4.9E-14 110.8 11.8 87 46-135 2-93 (303)
81 PRK15029 arginine decarboxylas 98.8 1.5E-08 3.3E-13 116.4 12.0 117 18-136 1-135 (755)
82 COG3279 LytT Response regulato 98.8 3.6E-08 7.9E-13 99.5 10.2 113 17-134 1-119 (244)
83 PRK11107 hybrid sensory histid 98.3 1E-05 2.2E-10 93.9 14.2 111 15-132 534-650 (919)
84 COG3706 PleD Response regulato 97.7 2.9E-05 6.2E-10 84.7 4.7 91 42-135 13-105 (435)
85 smart00448 REC cheY-homologous 97.7 0.00032 7E-09 48.4 7.9 55 18-74 1-55 (55)
86 PF06490 FleQ: Flagellar regul 97.3 0.0012 2.6E-08 59.0 8.9 103 19-131 1-107 (109)
87 PF00249 Myb_DNA-binding: Myb- 96.5 0.004 8.7E-08 47.4 4.3 48 319-369 1-48 (48)
88 TIGR00640 acid_CoA_mut_C methy 96.2 0.16 3.4E-06 47.2 14.2 115 18-134 3-129 (132)
89 cd02071 MM_CoA_mut_B12_BD meth 96.1 0.085 1.8E-06 47.8 11.7 104 24-129 10-121 (122)
90 PRK02261 methylaspartate mutas 96.1 0.13 2.9E-06 47.9 12.8 114 16-132 2-134 (137)
91 PRK10618 phosphotransfer inter 95.6 0.053 1.1E-06 64.7 9.9 52 14-73 686-737 (894)
92 PF03709 OKR_DC_1_N: Orn/Lys/A 95.4 0.11 2.4E-06 46.8 9.0 103 29-133 5-113 (115)
93 cd02067 B12-binding B12 bindin 94.5 0.29 6.3E-06 43.6 9.4 91 24-116 10-108 (119)
94 PRK15399 lysine decarboxylase 93.6 0.37 8.1E-06 56.2 10.2 115 18-137 1-126 (713)
95 TIGR01501 MthylAspMutase methy 93.0 1.5 3.4E-05 41.0 11.5 108 24-133 12-133 (134)
96 COG2185 Sbm Methylmalonyl-CoA 92.5 2.5 5.5E-05 40.1 12.3 112 16-133 11-138 (143)
97 PRK15400 lysine decarboxylase 92.4 1 2.2E-05 52.7 11.6 115 18-137 1-126 (714)
98 TIGR03815 CpaE_hom_Actino heli 92.3 0.4 8.7E-06 50.1 7.5 82 41-131 1-85 (322)
99 COG4999 Uncharacterized domain 91.5 0.7 1.5E-05 42.8 7.1 105 16-127 10-120 (140)
100 PLN03162 golden-2 like transcr 91.1 0.49 1.1E-05 50.8 6.5 99 431-537 358-482 (526)
101 smart00426 TEA TEA domain. 89.5 0.45 9.7E-06 39.7 3.7 46 321-367 5-67 (68)
102 cd02072 Glm_B12_BD B12 binding 89.1 6.5 0.00014 36.6 11.5 102 25-129 11-127 (128)
103 PF02310 B12-binding: B12 bind 88.4 3.8 8.3E-05 36.0 9.2 90 24-116 11-110 (121)
104 PRK09426 methylmalonyl-CoA mut 88.1 5.9 0.00013 46.6 12.9 115 18-134 583-709 (714)
105 KOG1924 RhoA GTPase effector D 87.9 2.7 5.9E-05 49.2 9.7 28 525-552 610-637 (1102)
106 PRK01130 N-acetylmannosamine-6 87.3 5.9 0.00013 39.2 10.8 97 17-117 88-202 (221)
107 cd04728 ThiG Thiazole synthase 85.8 3.3 7.2E-05 42.6 8.2 109 18-134 94-226 (248)
108 cd02070 corrinoid_protein_B12- 85.2 6.3 0.00014 38.7 9.7 95 17-116 82-190 (201)
109 PRK00208 thiG thiazole synthas 84.9 7.2 0.00016 40.3 10.1 109 18-134 94-226 (250)
110 PRK05749 3-deoxy-D-manno-octul 84.8 7 0.00015 41.9 10.6 109 17-133 262-387 (425)
111 cd02069 methionine_synthase_B1 84.7 5.9 0.00013 39.7 9.2 99 17-117 88-201 (213)
112 PF10087 DUF2325: Uncharacteri 83.7 7.6 0.00016 33.7 8.5 87 19-107 1-93 (97)
113 PLN02871 UDP-sulfoquinovose:DA 82.1 13 0.00028 40.6 11.5 106 17-133 290-399 (465)
114 PF07688 KaiA: KaiA domain; I 81.8 5.9 0.00013 41.1 8.0 117 19-139 2-124 (283)
115 cd04729 NanE N-acetylmannosami 81.6 15 0.00031 36.4 10.6 81 33-117 114-206 (219)
116 PRK15320 transcriptional activ 81.0 3.8 8.3E-05 41.2 6.1 140 19-166 3-184 (251)
117 TIGR03088 stp2 sugar transfera 80.5 10 0.00023 39.3 9.6 106 17-133 229-337 (374)
118 cd03820 GT1_amsD_like This fam 80.2 25 0.00055 34.3 11.7 107 17-133 209-318 (348)
119 cd03823 GT1_ExpE7_like This fa 79.8 25 0.00053 34.9 11.7 74 51-133 254-328 (359)
120 PRK00043 thiE thiamine-phospha 79.7 29 0.00062 33.5 11.8 72 41-116 104-187 (212)
121 PRK15484 lipopolysaccharide 1, 79.3 32 0.00069 36.6 13.0 108 17-133 224-343 (380)
122 PRK12704 phosphodiesterase; Pr 78.1 4.4 9.6E-05 45.9 6.4 48 89-136 250-299 (520)
123 cd03819 GT1_WavL_like This fam 77.4 35 0.00077 34.4 12.2 107 17-132 216-328 (355)
124 PRK14098 glycogen synthase; Pr 77.3 23 0.00051 39.5 11.7 111 17-133 336-450 (489)
125 PRK00278 trpC indole-3-glycero 77.0 41 0.00089 34.6 12.6 88 26-117 145-240 (260)
126 TIGR03151 enACPred_II putative 76.6 20 0.00044 37.8 10.4 82 33-117 101-190 (307)
127 COG0512 PabA Anthranilate/para 76.2 3.8 8.2E-05 40.7 4.5 76 17-94 1-80 (191)
128 PF01596 Methyltransf_3: O-met 75.8 13 0.00028 37.1 8.2 61 13-73 66-131 (205)
129 cd04962 GT1_like_5 This family 75.7 30 0.00064 35.4 11.2 105 18-133 228-335 (371)
130 PF01408 GFO_IDH_MocA: Oxidore 75.1 55 0.0012 28.4 12.0 104 18-132 1-110 (120)
131 PRK10128 2-keto-3-deoxy-L-rham 75.0 29 0.00064 36.1 10.9 96 32-130 8-111 (267)
132 TIGR02370 pyl_corrinoid methyl 74.8 13 0.00028 36.5 7.9 94 18-116 85-192 (197)
133 PRK15427 colanic acid biosynth 74.1 47 0.001 35.9 12.7 107 17-133 253-369 (406)
134 PRK10558 alpha-dehydro-beta-de 73.8 30 0.00064 35.7 10.5 97 31-130 8-112 (256)
135 PF00534 Glycos_transf_1: Glyc 73.7 20 0.00044 32.7 8.5 108 17-135 47-159 (172)
136 TIGR03449 mycothiol_MshA UDP-N 73.6 40 0.00087 35.5 11.8 106 18-133 253-367 (405)
137 cd03813 GT1_like_3 This family 73.1 23 0.00049 39.0 10.2 106 17-133 324-441 (475)
138 TIGR03239 GarL 2-dehydro-3-deo 71.8 40 0.00087 34.6 10.9 95 33-130 3-105 (249)
139 cd03114 ArgK-like The function 70.7 11 0.00025 35.2 6.2 62 50-115 80-142 (148)
140 cd03801 GT1_YqgM_like This fam 70.4 58 0.0013 31.8 11.4 106 17-133 230-340 (374)
141 PF03602 Cons_hypoth95: Conser 70.4 16 0.00035 35.6 7.4 54 18-71 66-122 (183)
142 PRK03958 tRNA 2'-O-methylase; 69.9 38 0.00083 33.4 9.7 90 19-116 33-127 (176)
143 cd04730 NPD_like 2-Nitropropan 68.7 59 0.0013 32.0 11.1 96 17-117 80-185 (236)
144 cd03785 GT1_MurG MurG is an N- 68.7 74 0.0016 32.5 12.2 64 64-133 253-323 (350)
145 cd03804 GT1_wbaZ_like This fam 68.6 35 0.00076 35.0 9.8 103 18-133 222-325 (351)
146 TIGR00007 phosphoribosylformim 68.3 53 0.0011 32.5 10.7 66 49-116 146-217 (230)
147 cd03795 GT1_like_4 This family 67.9 1E+02 0.0023 30.9 13.0 109 17-134 218-332 (357)
148 cd01424 MGS_CPS_II Methylglyox 67.7 41 0.0009 29.5 8.8 68 22-92 7-99 (110)
149 cd00331 IGPS Indole-3-glycerol 67.3 1.1E+02 0.0023 30.1 12.6 77 37-116 117-200 (217)
150 PRK00726 murG undecaprenyldiph 66.7 91 0.002 32.3 12.6 63 64-133 253-323 (357)
151 cd05844 GT1_like_7 Glycosyltra 66.3 79 0.0017 32.2 11.9 107 17-133 219-335 (367)
152 COG0673 MviM Predicted dehydro 66.1 1.1E+02 0.0024 31.5 12.9 135 16-161 2-143 (342)
153 PRK15490 Vi polysaccharide bio 65.9 79 0.0017 36.6 12.6 102 17-129 429-533 (578)
154 PRK09922 UDP-D-galactose:(gluc 65.8 98 0.0021 32.3 12.6 109 17-134 210-324 (359)
155 PRK07649 para-aminobenzoate/an 65.5 6.8 0.00015 38.5 3.7 48 20-69 2-49 (195)
156 PF05690 ThiG: Thiazole biosyn 64.7 29 0.00063 35.8 8.0 95 34-133 116-225 (247)
157 PLN02316 synthase/transferase 64.1 58 0.0013 40.1 11.7 112 17-134 869-998 (1036)
158 cd03818 GT1_ExpC_like This fam 64.0 72 0.0016 33.7 11.4 76 49-134 290-366 (396)
159 TIGR01133 murG undecaprenyldip 64.0 1E+02 0.0022 31.5 12.2 64 64-133 251-320 (348)
160 PLN02275 transferase, transfer 64.0 64 0.0014 34.1 11.0 104 17-131 261-370 (371)
161 CHL00162 thiG thiamin biosynth 62.7 94 0.002 32.6 11.3 98 33-135 129-241 (267)
162 PF02254 TrkA_N: TrkA-N domain 62.4 73 0.0016 27.5 9.3 89 18-116 22-115 (116)
163 cd04724 Tryptophan_synthase_al 62.3 71 0.0015 32.4 10.4 53 79-131 64-125 (242)
164 cd03806 GT1_ALG11_like This fa 62.1 79 0.0017 34.3 11.4 106 17-133 273-391 (419)
165 PRK01231 ppnK inorganic polyph 61.7 73 0.0016 33.6 10.6 103 14-135 1-119 (295)
166 cd04726 KGPDC_HPS 3-Keto-L-gul 60.7 1.2E+02 0.0027 29.0 11.4 97 17-117 77-186 (202)
167 COG0313 Predicted methyltransf 60.5 68 0.0015 33.8 10.0 88 17-110 30-126 (275)
168 PRK13609 diacylglycerol glucos 60.3 1.2E+02 0.0026 31.8 12.2 103 18-133 231-337 (380)
169 cd03799 GT1_amsK_like This is 60.0 76 0.0017 31.8 10.2 107 17-133 210-326 (355)
170 PRK01911 ppnK inorganic polyph 59.7 38 0.00083 35.6 8.2 100 18-136 1-122 (292)
171 cd04949 GT1_gtfA_like This fam 59.3 77 0.0017 32.7 10.4 65 64-134 279-345 (372)
172 PF03060 NMO: Nitronate monoox 58.9 67 0.0014 34.1 9.9 82 33-117 128-219 (330)
173 cd06533 Glyco_transf_WecG_TagA 58.9 59 0.0013 31.2 8.8 73 17-94 46-130 (171)
174 COG0134 TrpC Indole-3-glycerol 58.8 84 0.0018 32.7 10.2 82 30-117 145-236 (254)
175 cd04727 pdxS PdxS is a subunit 58.6 34 0.00074 36.1 7.5 68 46-117 118-225 (283)
176 TIGR02149 glgA_Coryne glycogen 58.3 1.6E+02 0.0036 30.4 12.6 107 17-133 229-351 (388)
177 PRK12724 flagellar biosynthesi 57.8 72 0.0016 35.7 10.1 98 16-115 251-365 (432)
178 PRK14099 glycogen synthase; Pr 57.8 74 0.0016 35.6 10.5 111 17-132 324-442 (485)
179 PRK06774 para-aminobenzoate sy 57.5 12 0.00026 36.2 3.8 73 20-94 2-78 (191)
180 TIGR02311 HpaI 2,4-dihydroxyhe 57.4 1.1E+02 0.0024 31.3 10.9 96 33-131 3-106 (249)
181 cd03825 GT1_wcfI_like This fam 57.3 32 0.00069 34.7 7.0 75 18-95 1-83 (365)
182 cd04951 GT1_WbdM_like This fam 57.2 70 0.0015 32.2 9.4 103 17-132 219-324 (360)
183 cd03807 GT1_WbnK_like This fam 57.1 1E+02 0.0022 30.3 10.4 63 64-134 269-332 (365)
184 PRK00748 1-(5-phosphoribosyl)- 57.0 47 0.001 32.8 7.9 65 50-116 148-219 (233)
185 PF03808 Glyco_tran_WecB: Glyc 56.8 92 0.002 29.9 9.7 66 17-87 48-122 (172)
186 PF04321 RmlD_sub_bind: RmlD s 56.8 19 0.00041 37.1 5.3 55 18-74 1-62 (286)
187 PRK05567 inosine 5'-monophosph 56.7 82 0.0018 35.3 10.6 98 16-117 239-360 (486)
188 TIGR00343 pyridoxal 5'-phospha 56.5 67 0.0015 34.0 9.2 55 78-132 184-248 (287)
189 cd02068 radical_SAM_B12_BD B12 56.5 73 0.0016 28.5 8.5 101 29-131 4-110 (127)
190 cd00564 TMP_TenI Thiamine mono 56.4 91 0.002 29.2 9.5 73 41-117 95-178 (196)
191 PRK00654 glgA glycogen synthas 56.4 1E+02 0.0022 33.8 11.3 107 17-133 311-427 (466)
192 cd04732 HisA HisA. Phosphorib 55.5 1.2E+02 0.0025 30.0 10.5 66 49-116 147-218 (234)
193 PLN02591 tryptophan synthase 55.5 1.4E+02 0.0031 30.8 11.3 100 19-118 109-219 (250)
194 cd04723 HisA_HisF Phosphoribos 55.4 49 0.0011 33.3 7.9 65 49-116 147-217 (233)
195 cd05212 NAD_bind_m-THF_DH_Cycl 55.3 38 0.00082 31.9 6.6 53 16-75 27-83 (140)
196 cd03812 GT1_CapH_like This fam 55.2 1.1E+02 0.0024 30.9 10.5 106 17-134 223-331 (358)
197 PRK06543 nicotinate-nucleotide 54.9 1.2E+02 0.0026 32.0 10.8 91 19-114 161-262 (281)
198 cd02065 B12-binding_like B12 b 54.9 46 0.00099 29.1 6.8 50 24-75 10-62 (125)
199 PRK11889 flhF flagellar biosyn 54.8 91 0.002 34.8 10.3 57 16-72 268-329 (436)
200 PRK14974 cell division protein 54.6 1.1E+02 0.0025 32.8 10.9 97 16-116 167-286 (336)
201 PRK08385 nicotinate-nucleotide 54.6 1E+02 0.0022 32.5 10.1 92 19-116 156-258 (278)
202 cd03802 GT1_AviGT4_like This f 54.5 1.9E+02 0.0041 28.8 12.0 104 17-132 197-306 (335)
203 TIGR02026 BchE magnesium-proto 54.3 72 0.0016 35.8 9.7 104 26-132 21-136 (497)
204 PRK13566 anthranilate synthase 54.1 31 0.00068 40.8 7.1 76 16-94 525-604 (720)
205 KOG1562 Spermidine synthase [A 53.8 42 0.00092 35.9 7.2 62 19-83 147-214 (337)
206 TIGR02095 glgA glycogen/starch 53.4 1.4E+02 0.0031 32.6 11.8 107 18-134 321-437 (473)
207 PLN02775 Probable dihydrodipic 53.3 2E+02 0.0044 30.4 12.2 100 18-121 12-138 (286)
208 PLN02274 inosine-5'-monophosph 53.2 1.1E+02 0.0023 34.9 10.8 98 16-117 259-380 (505)
209 cd03811 GT1_WabH_like This fam 53.1 1.5E+02 0.0032 28.8 10.7 63 64-132 264-327 (353)
210 cd04722 TIM_phosphate_binding 53.0 1.1E+02 0.0023 28.1 9.3 54 62-116 135-198 (200)
211 PRK03708 ppnK inorganic polyph 53.0 81 0.0018 32.9 9.2 96 18-135 1-113 (277)
212 cd03808 GT1_cap1E_like This fa 52.8 1.5E+02 0.0032 29.0 10.7 64 64-133 264-328 (359)
213 PRK03372 ppnK inorganic polyph 52.8 1.6E+02 0.0034 31.4 11.4 100 18-136 6-130 (306)
214 PF13941 MutL: MutL protein 52.8 2.5E+02 0.0054 31.7 13.4 118 16-136 75-211 (457)
215 TIGR01334 modD putative molybd 52.3 47 0.001 34.9 7.3 93 19-116 158-262 (277)
216 PRK04148 hypothetical protein; 52.0 62 0.0014 30.4 7.4 94 17-123 17-114 (134)
217 PRK05234 mgsA methylglyoxal sy 51.6 83 0.0018 29.7 8.2 74 17-96 4-83 (142)
218 PRK05637 anthranilate synthase 51.4 24 0.00052 35.1 4.9 49 18-69 2-50 (208)
219 TIGR00566 trpG_papA glutamine 51.4 19 0.00041 35.0 4.0 48 20-69 2-49 (188)
220 cd03798 GT1_wlbH_like This fam 51.3 1E+02 0.0022 30.2 9.3 74 51-134 270-344 (377)
221 PRK05458 guanosine 5'-monophos 51.2 2.3E+02 0.0051 30.4 12.5 96 19-117 113-230 (326)
222 PRK06895 putative anthranilate 51.1 20 0.00042 34.8 4.1 31 18-48 2-32 (190)
223 TIGR00693 thiE thiamine-phosph 50.8 1.1E+02 0.0023 29.3 9.2 67 46-116 102-179 (196)
224 PRK00941 acetyl-CoA decarbonyl 49.9 2.3E+02 0.005 34.1 13.1 115 16-134 236-383 (781)
225 cd03816 GT1_ALG1_like This fam 49.8 1.8E+02 0.0038 31.4 11.6 106 17-134 269-381 (415)
226 PRK07896 nicotinate-nucleotide 49.5 73 0.0016 33.7 8.2 91 20-115 173-272 (289)
227 PRK10742 putative methyltransf 49.3 77 0.0017 32.9 8.2 56 17-75 110-176 (250)
228 PRK08007 para-aminobenzoate sy 49.3 18 0.0004 35.1 3.6 73 20-94 2-78 (187)
229 PRK09016 quinolinate phosphori 49.1 66 0.0014 34.2 7.8 92 19-115 181-278 (296)
230 PRK12726 flagellar biosynthesi 49.0 1.3E+02 0.0028 33.4 10.3 57 16-72 233-294 (407)
231 cd06338 PBP1_ABC_ligand_bindin 48.9 1.7E+02 0.0038 29.9 10.9 75 18-97 142-231 (345)
232 PF04131 NanE: Putative N-acet 48.8 1.6E+02 0.0035 29.5 10.0 96 17-117 64-173 (192)
233 cd03794 GT1_wbuB_like This fam 48.7 1.7E+02 0.0037 28.9 10.5 75 49-132 284-363 (394)
234 TIGR03765 ICE_PFL_4695 integra 48.4 1E+02 0.0022 28.1 7.8 73 14-95 21-100 (105)
235 PLN02591 tryptophan synthase 48.4 56 0.0012 33.7 7.1 53 79-131 66-127 (250)
236 PRK04302 triosephosphate isome 48.1 2E+02 0.0044 28.6 10.9 79 36-117 109-202 (223)
237 PRK05703 flhF flagellar biosyn 47.9 1.5E+02 0.0032 32.8 10.8 89 17-106 251-350 (424)
238 PRK06559 nicotinate-nucleotide 47.8 99 0.0022 32.8 8.9 91 19-114 169-266 (290)
239 PF02254 TrkA_N: TrkA-N domain 47.6 90 0.0019 27.0 7.4 74 20-102 1-76 (116)
240 PRK07695 transcriptional regul 47.5 2.7E+02 0.0059 27.0 11.5 66 46-115 101-175 (201)
241 PRK13587 1-(5-phosphoribosyl)- 47.5 91 0.002 31.6 8.4 64 51-116 151-220 (234)
242 cd03800 GT1_Sucrose_synthase T 47.3 2.1E+02 0.0045 29.4 11.2 75 49-133 292-367 (398)
243 COG2022 ThiG Uncharacterized e 47.2 1.1E+02 0.0023 31.9 8.6 80 34-117 123-211 (262)
244 PF01729 QRPTase_C: Quinolinat 46.9 50 0.0011 32.0 6.1 93 19-116 52-154 (169)
245 PRK02155 ppnK NAD(+)/NADH kina 46.8 1.4E+02 0.003 31.4 9.8 98 19-135 7-120 (291)
246 PLN02781 Probable caffeoyl-CoA 46.8 87 0.0019 31.6 8.1 61 14-74 90-155 (234)
247 cd00452 KDPG_aldolase KDPG and 46.7 1.4E+02 0.0031 28.8 9.3 74 37-117 93-171 (190)
248 PRK06978 nicotinate-nucleotide 46.7 99 0.0021 32.9 8.7 91 19-114 178-274 (294)
249 COG0742 N6-adenine-specific me 46.7 57 0.0012 32.4 6.6 54 18-72 67-123 (187)
250 PRK11840 bifunctional sulfur c 46.5 1.9E+02 0.0042 31.2 10.9 112 18-134 168-300 (326)
251 PRK05848 nicotinate-nucleotide 46.3 76 0.0017 33.2 7.8 93 19-116 154-256 (273)
252 PTZ00314 inosine-5'-monophosph 46.3 1.6E+02 0.0034 33.4 10.8 30 88-117 344-373 (495)
253 cd06296 PBP1_CatR_like Ligand- 46.2 1E+02 0.0022 30.1 8.3 64 28-97 16-87 (270)
254 PRK10423 transcriptional repre 46.1 1E+02 0.0022 31.2 8.7 64 30-96 75-144 (327)
255 TIGR00734 hisAF_rel hisA/hisF 46.1 1E+02 0.0022 31.0 8.4 66 49-116 142-212 (221)
256 PRK06731 flhF flagellar biosyn 46.0 1.3E+02 0.0027 31.5 9.3 55 17-72 103-163 (270)
257 PLN02589 caffeoyl-CoA O-methyl 46.0 90 0.002 32.1 8.1 59 14-72 101-165 (247)
258 TIGR03061 pip_yhgE_Nterm YhgE/ 45.9 53 0.0012 30.9 6.1 55 15-75 41-105 (164)
259 PRK10307 putative glycosyl tra 45.7 3.4E+02 0.0075 28.7 12.9 105 17-133 259-372 (412)
260 COG1748 LYS9 Saccharopine dehy 45.6 1.1E+02 0.0025 33.6 9.3 98 17-121 1-102 (389)
261 COG0157 NadC Nicotinate-nucleo 45.5 96 0.0021 32.8 8.2 91 19-114 160-259 (280)
262 TIGR01182 eda Entner-Doudoroff 45.4 2.1E+02 0.0045 28.8 10.3 79 44-126 13-95 (204)
263 PRK06843 inosine 5-monophospha 45.3 1.8E+02 0.004 32.2 10.8 99 16-117 164-285 (404)
264 PRK10669 putative cation:proto 45.3 1.4E+02 0.003 33.9 10.2 26 88-115 508-533 (558)
265 cd08187 BDH Butanol dehydrogen 45.2 1.1E+02 0.0023 33.1 9.0 51 17-69 28-92 (382)
266 TIGR00262 trpA tryptophan synt 45.1 2.3E+02 0.005 29.1 11.0 98 20-117 119-227 (256)
267 PF07830 PP2C_C: Protein serin 44.7 31 0.00067 29.9 3.8 39 509-552 27-65 (81)
268 cd03814 GT1_like_2 This family 44.1 2.3E+02 0.005 28.1 10.7 75 49-133 256-331 (364)
269 CHL00101 trpG anthranilate syn 43.9 25 0.00055 34.1 3.6 48 20-69 2-49 (190)
270 PRK05670 anthranilate synthase 43.8 28 0.0006 33.6 3.9 48 20-69 2-49 (189)
271 KOG3040 Predicted sugar phosph 43.8 21 0.00047 36.4 3.1 63 18-81 40-106 (262)
272 PRK13143 hisH imidazole glycer 43.6 55 0.0012 32.0 6.0 44 18-69 1-44 (200)
273 COG4122 Predicted O-methyltran 43.4 98 0.0021 31.4 7.8 79 14-94 81-164 (219)
274 PF09936 Methyltrn_RNA_4: SAM- 43.3 1.5E+02 0.0032 29.6 8.7 97 19-121 44-162 (185)
275 cd00381 IMPDH IMPDH: The catal 43.2 2E+02 0.0042 30.7 10.4 97 16-116 105-225 (325)
276 cd03805 GT1_ALG2_like This fam 43.2 2.7E+02 0.0058 28.8 11.4 106 17-133 245-363 (392)
277 cd06282 PBP1_GntR_like_2 Ligan 42.9 1.4E+02 0.003 28.9 8.6 64 29-97 17-88 (266)
278 cd08185 Fe-ADH1 Iron-containin 42.8 1.1E+02 0.0024 32.9 8.6 50 18-69 26-89 (380)
279 PRK06106 nicotinate-nucleotide 42.7 86 0.0019 33.0 7.5 91 20-115 167-264 (281)
280 cd02911 arch_FMN Archeal FMN-b 42.6 3.5E+02 0.0075 27.4 11.7 88 27-116 125-219 (233)
281 PRK07428 nicotinate-nucleotide 42.6 1.1E+02 0.0024 32.3 8.3 92 19-116 168-270 (288)
282 PRK11359 cyclic-di-GMP phospho 42.6 1.5E+02 0.0033 34.2 10.3 97 30-129 680-792 (799)
283 PRK13111 trpA tryptophan synth 42.6 66 0.0014 33.3 6.6 53 79-131 76-138 (258)
284 TIGR00095 RNA methyltransferas 42.4 85 0.0018 30.6 7.0 67 19-86 74-143 (189)
285 PF00497 SBP_bac_3: Bacterial 42.2 91 0.002 29.0 7.0 103 16-137 109-211 (225)
286 KOG4175 Tryptophan synthase al 42.2 43 0.00092 34.0 4.9 39 88-126 95-139 (268)
287 PLN02939 transferase, transfer 41.8 1.8E+02 0.0039 35.8 10.8 111 17-133 808-930 (977)
288 PF00389 2-Hacid_dh: D-isomer 41.6 2.1E+02 0.0046 25.6 9.1 96 20-127 1-100 (133)
289 PLN02476 O-methyltransferase 41.5 1.1E+02 0.0023 32.2 8.0 81 14-94 140-226 (278)
290 PRK07028 bifunctional hexulose 41.4 4.7E+02 0.01 28.7 13.3 99 32-134 98-212 (430)
291 PRK04128 1-(5-phosphoribosyl)- 41.3 1.2E+02 0.0027 30.5 8.2 66 49-116 144-210 (228)
292 PF00532 Peripla_BP_1: Peripla 40.9 1E+02 0.0022 31.4 7.7 66 29-98 19-89 (279)
293 cd03817 GT1_UGDG_like This fam 40.8 2.6E+02 0.0057 27.6 10.5 73 50-133 269-342 (374)
294 COG4262 Predicted spermidine s 40.8 80 0.0017 34.9 7.0 62 12-75 308-377 (508)
295 PLN02335 anthranilate synthase 40.7 29 0.00063 34.8 3.6 50 18-69 19-68 (222)
296 TIGR00262 trpA tryptophan synt 40.7 81 0.0018 32.4 6.9 53 79-131 74-136 (256)
297 TIGR02472 sucr_P_syn_N sucrose 40.7 3E+02 0.0065 29.9 11.7 78 50-133 327-405 (439)
298 cd01948 EAL EAL domain. This d 40.6 72 0.0016 30.7 6.2 88 31-121 135-238 (240)
299 KOG2236 Uncharacterized conser 40.1 82 0.0018 35.4 7.1 114 361-492 367-482 (483)
300 TIGR00696 wecB_tagA_cpsF bacte 39.8 92 0.002 30.4 6.8 66 16-86 47-120 (177)
301 PRK09522 bifunctional glutamin 39.6 40 0.00086 38.5 4.8 75 17-94 1-83 (531)
302 PF01564 Spermine_synth: Sperm 39.6 71 0.0015 32.5 6.2 58 15-75 98-162 (246)
303 PRK00025 lpxB lipid-A-disaccha 39.5 2.9E+02 0.0062 28.8 11.0 23 111-133 318-340 (380)
304 PRK00811 spermidine synthase; 39.4 1.1E+02 0.0025 31.6 7.8 56 17-75 100-162 (283)
305 CHL00194 ycf39 Ycf39; Provisio 39.4 3.8E+02 0.0082 27.6 11.7 70 18-94 1-70 (317)
306 PRK13789 phosphoribosylamine-- 39.4 3.1E+02 0.0066 30.3 11.5 72 16-92 3-96 (426)
307 PRK07765 para-aminobenzoate sy 39.2 38 0.00082 33.7 4.1 52 18-69 1-52 (214)
308 PRK10653 D-ribose transporter 39.1 1.5E+02 0.0032 29.8 8.5 63 30-96 45-115 (295)
309 TIGR00078 nadC nicotinate-nucl 39.0 2E+02 0.0044 29.8 9.5 92 19-116 150-249 (265)
310 cd08176 LPO Lactadehyde:propan 38.8 1.6E+02 0.0035 31.7 9.1 50 18-69 29-91 (377)
311 PLN02366 spermidine synthase 38.7 1.4E+02 0.0031 31.6 8.5 59 15-75 113-177 (308)
312 PRK06552 keto-hydroxyglutarate 38.6 1.8E+02 0.0039 29.2 8.8 90 35-127 8-104 (213)
313 PRK08649 inosine 5-monophospha 38.5 3.5E+02 0.0076 29.5 11.6 65 49-116 142-214 (368)
314 KOG1601 GATA-4/5/6 transcripti 38.5 3.9 8.5E-05 40.0 -3.0 107 21-130 19-135 (340)
315 PLN02819 lysine-ketoglutarate 38.4 2.8E+02 0.006 34.6 11.8 109 16-130 568-691 (1042)
316 PRK13585 1-(5-phosphoribosyl)- 38.4 3.6E+02 0.0077 26.8 11.0 76 49-126 150-237 (241)
317 PRK02649 ppnK inorganic polyph 38.4 2.3E+02 0.0049 30.2 9.9 100 18-136 2-126 (305)
318 PF01959 DHQS: 3-dehydroquinat 38.3 2.5E+02 0.0053 30.8 10.2 69 64-132 97-168 (354)
319 TIGR01302 IMP_dehydrog inosine 38.2 2.4E+02 0.0051 31.4 10.5 99 16-117 235-356 (450)
320 PRK12723 flagellar biosynthesi 38.2 2.5E+02 0.0055 30.8 10.5 98 17-115 206-318 (388)
321 PRK08072 nicotinate-nucleotide 38.1 2.1E+02 0.0045 30.1 9.5 89 19-116 160-259 (277)
322 PLN02605 monogalactosyldiacylg 38.1 2.7E+02 0.0059 29.5 10.7 52 79-133 292-346 (382)
323 PRK13608 diacylglycerol glucos 38.1 3.2E+02 0.007 29.2 11.3 52 78-132 282-336 (391)
324 CHL00200 trpA tryptophan synth 38.0 96 0.0021 32.2 6.9 53 79-131 79-140 (263)
325 cd06275 PBP1_PurR Ligand-bindi 37.9 1.7E+02 0.0036 28.5 8.4 65 30-97 18-88 (269)
326 PLN02716 nicotinate-nucleotide 37.9 1.4E+02 0.0031 31.9 8.2 96 19-114 172-287 (308)
327 PRK01395 V-type ATP synthase s 37.8 1.6E+02 0.0034 26.4 7.4 75 16-97 2-79 (104)
328 PRK01372 ddl D-alanine--D-alan 37.8 61 0.0013 33.2 5.5 53 17-71 4-64 (304)
329 PRK13125 trpA tryptophan synth 37.6 3.1E+02 0.0067 27.7 10.5 85 29-117 117-214 (244)
330 TIGR02082 metH 5-methyltetrahy 37.5 1.4E+02 0.0031 37.5 9.4 110 18-132 733-857 (1178)
331 cd06281 PBP1_LacI_like_5 Ligan 37.2 1.6E+02 0.0035 28.8 8.2 64 29-97 17-88 (269)
332 cd00167 SANT 'SWI3, ADA2, N-Co 37.1 98 0.0021 21.6 5.0 44 321-368 1-44 (45)
333 PRK01033 imidazole glycerol ph 37.0 1.5E+02 0.0032 30.3 8.1 66 49-116 153-225 (258)
334 PRK03378 ppnK inorganic polyph 36.9 1.2E+02 0.0027 31.8 7.7 99 18-135 6-120 (292)
335 cd03825 GT1_wcfI_like This fam 36.9 2.7E+02 0.0058 28.1 9.9 64 64-133 265-329 (365)
336 cd06318 PBP1_ABC_sugar_binding 36.8 1.6E+02 0.0034 28.9 8.1 62 30-96 18-88 (282)
337 PRK15128 23S rRNA m(5)C1962 me 36.8 1.1E+02 0.0023 33.7 7.4 54 18-71 244-301 (396)
338 PF13659 Methyltransf_26: Meth 36.8 1.1E+02 0.0024 26.1 6.3 55 18-74 24-81 (117)
339 cd03791 GT1_Glycogen_synthase_ 36.8 3.2E+02 0.0069 29.6 11.1 106 18-133 326-441 (476)
340 PRK12826 3-ketoacyl-(acyl-carr 36.6 1.4E+02 0.0031 28.7 7.7 79 15-96 4-91 (251)
341 PRK13170 hisH imidazole glycer 36.6 85 0.0018 30.7 6.0 44 18-69 1-44 (196)
342 smart00052 EAL Putative diguan 36.6 1.2E+02 0.0025 29.3 7.0 87 32-121 137-239 (241)
343 PLN02727 NAD kinase 36.6 1.3E+02 0.0029 36.8 8.5 100 18-136 679-801 (986)
344 PRK13146 hisH imidazole glycer 36.5 80 0.0017 31.2 5.9 45 17-69 1-47 (209)
345 TIGR01761 thiaz-red thiazoliny 36.5 4.6E+02 0.01 28.3 12.0 128 17-161 3-137 (343)
346 PRK04180 pyridoxal biosynthesi 36.4 2E+02 0.0044 30.6 9.0 55 78-132 190-254 (293)
347 cd06271 PBP1_AglR_RafR_like Li 36.3 1.9E+02 0.0041 27.9 8.5 64 29-96 21-90 (268)
348 TIGR00064 ftsY signal recognit 36.1 3.5E+02 0.0075 28.0 10.7 55 16-72 99-163 (272)
349 PLN02949 transferase, transfer 36.0 2E+02 0.0043 32.1 9.5 109 17-133 303-421 (463)
350 cd08178 AAD_C C-terminal alcoh 36.0 1.6E+02 0.0036 31.9 8.7 50 18-69 22-84 (398)
351 TIGR02918 accessory Sec system 35.8 3.5E+02 0.0076 30.5 11.5 104 17-132 350-465 (500)
352 TIGR01037 pyrD_sub1_fam dihydr 35.8 3.7E+02 0.0079 27.8 10.9 34 81-114 224-260 (300)
353 cd06292 PBP1_LacI_like_10 Liga 35.7 1.3E+02 0.0027 29.5 7.2 68 28-97 16-92 (273)
354 TIGR03704 PrmC_rel_meth putati 35.5 3.1E+02 0.0068 27.9 10.2 52 17-71 110-161 (251)
355 PRK01362 putative translaldola 35.5 2.1E+02 0.0046 28.8 8.8 79 34-116 94-184 (214)
356 TIGR00308 TRM1 tRNA(guanine-26 35.4 6.2E+02 0.014 27.6 12.9 111 18-136 70-192 (374)
357 PRK05993 short chain dehydroge 35.3 1.1E+02 0.0024 30.7 6.9 55 17-73 4-58 (277)
358 PRK05581 ribulose-phosphate 3- 35.3 3.3E+02 0.0071 26.4 10.0 80 34-117 102-198 (220)
359 PRK13397 3-deoxy-7-phosphohept 35.2 3.2E+02 0.007 28.4 10.2 84 31-116 112-218 (250)
360 COG0118 HisH Glutamine amidotr 35.2 88 0.0019 31.6 5.9 37 17-53 1-37 (204)
361 COG1609 PurR Transcriptional r 35.2 1.2E+02 0.0027 31.9 7.5 94 27-134 74-173 (333)
362 cd08181 PPD-like 1,3-propanedi 35.1 2.1E+02 0.0045 30.6 9.2 61 18-84 26-100 (357)
363 PF03102 NeuB: NeuB family; I 34.9 93 0.002 32.0 6.2 75 28-107 56-132 (241)
364 PF11072 DUF2859: Protein of u 34.9 1.7E+02 0.0037 28.0 7.4 73 14-95 59-138 (142)
365 PF06283 ThuA: Trehalose utili 34.7 90 0.0019 30.6 5.9 73 19-95 1-88 (217)
366 cd03822 GT1_ecORF704_like This 34.5 3.2E+02 0.007 27.2 10.0 75 50-133 258-333 (366)
367 PRK02645 ppnK inorganic polyph 34.5 2.6E+02 0.0056 29.6 9.6 100 17-134 3-115 (305)
368 PLN02501 digalactosyldiacylgly 34.4 2.3E+02 0.0049 34.1 9.8 103 17-133 577-680 (794)
369 cd06388 PBP1_iGluR_AMPA_GluR4 34.3 2.2E+02 0.0048 30.4 9.3 56 29-87 139-199 (371)
370 TIGR00853 pts-lac PTS system, 34.2 1.7E+02 0.0037 25.5 7.0 73 17-96 3-83 (95)
371 cd05013 SIS_RpiR RpiR-like pro 34.2 2.6E+02 0.0057 24.2 8.3 81 19-101 15-100 (139)
372 TIGR00642 mmCoA_mut_beta methy 34.1 2.5E+02 0.0054 32.9 10.1 110 18-131 495-615 (619)
373 PF00977 His_biosynth: Histidi 34.1 1.4E+02 0.003 30.0 7.3 68 48-116 147-219 (229)
374 PRK03659 glutathione-regulated 34.0 2.2E+02 0.0047 32.9 9.7 51 62-116 463-517 (601)
375 cd01541 PBP1_AraR Ligand-bindi 33.8 1.7E+02 0.0037 28.6 7.8 67 28-97 16-92 (273)
376 PRK14077 pnk inorganic polypho 33.6 4E+02 0.0087 28.0 10.8 100 17-135 10-121 (287)
377 PF00218 IGPS: Indole-3-glycer 33.6 2.2E+02 0.0049 29.5 8.8 85 30-117 147-238 (254)
378 PRK14967 putative methyltransf 33.6 3.1E+02 0.0067 27.0 9.6 48 19-71 61-109 (223)
379 cd06284 PBP1_LacI_like_6 Ligan 33.5 2.2E+02 0.0047 27.5 8.4 62 29-96 17-85 (267)
380 PF01285 TEA: TEA/ATTS domain 33.5 40 0.00086 37.6 3.5 52 316-368 46-112 (431)
381 cd05566 PTS_IIB_galactitol PTS 33.4 2.8E+02 0.0062 23.1 8.3 54 29-96 17-71 (89)
382 cd06273 PBP1_GntR_like_1 This 33.2 2E+02 0.0042 28.0 8.1 61 30-96 18-86 (268)
383 PLN02823 spermine synthase 33.2 1E+02 0.0022 33.1 6.5 54 18-74 128-187 (336)
384 TIGR00736 nifR3_rel_arch TIM-b 33.2 4.8E+02 0.01 26.6 11.0 62 52-116 152-219 (231)
385 cd00331 IGPS Indole-3-glycerol 33.1 3.4E+02 0.0074 26.5 9.7 64 66-130 48-116 (217)
386 PRK14722 flhF flagellar biosyn 32.9 2.2E+02 0.0049 31.1 9.0 85 18-104 168-263 (374)
387 PRK09526 lacI lac repressor; R 32.8 1.8E+02 0.0039 29.7 8.1 64 28-95 80-151 (342)
388 PLN02935 Bifunctional NADH kin 32.8 2.5E+02 0.0053 32.2 9.5 99 18-135 195-319 (508)
389 cd03796 GT1_PIG-A_like This fa 32.7 2.6E+02 0.0056 29.6 9.5 105 17-134 224-333 (398)
390 TIGR03569 NeuB_NnaB N-acetylne 32.7 1.7E+02 0.0036 31.5 7.9 76 27-107 75-152 (329)
391 PF14097 SpoVAE: Stage V sporu 32.7 1.6E+02 0.0035 29.1 7.0 78 20-97 2-94 (180)
392 TIGR01815 TrpE-clade3 anthrani 32.7 1.1E+02 0.0024 36.3 7.1 76 16-94 515-594 (717)
393 cd01575 PBP1_GntR Ligand-bindi 32.3 1.9E+02 0.004 28.0 7.7 61 30-96 18-86 (268)
394 TIGR03590 PseG pseudaminic aci 32.3 2.5E+02 0.0054 28.9 8.9 75 16-99 30-114 (279)
395 PRK03692 putative UDP-N-acetyl 32.2 2.4E+02 0.0051 29.0 8.6 73 16-93 104-187 (243)
396 cd08179 NADPH_BDH NADPH-depend 32.1 2E+02 0.0043 30.9 8.5 50 18-69 24-87 (375)
397 cd01743 GATase1_Anthranilate_S 32.1 89 0.0019 29.8 5.3 48 20-69 1-48 (184)
398 COG5012 Predicted cobalamin bi 32.1 78 0.0017 32.5 5.0 87 28-117 119-213 (227)
399 cd01574 PBP1_LacI Ligand-bindi 32.1 2.2E+02 0.0047 27.6 8.1 65 27-96 15-87 (264)
400 cd06267 PBP1_LacI_sugar_bindin 31.9 3.2E+02 0.007 25.9 9.2 62 31-98 19-88 (264)
401 TIGR00875 fsa_talC_mipB fructo 31.9 2E+02 0.0043 29.0 7.9 79 35-118 95-186 (213)
402 cd06354 PBP1_BmpA_PnrA_like Pe 31.9 1.5E+02 0.0032 29.5 7.0 64 30-96 21-89 (265)
403 cd04946 GT1_AmsK_like This fam 31.9 4.7E+02 0.01 28.1 11.3 107 18-133 264-376 (407)
404 TIGR03499 FlhF flagellar biosy 31.8 1.1E+02 0.0025 31.6 6.4 53 18-71 225-280 (282)
405 TIGR02634 xylF D-xylose ABC tr 31.7 1.4E+02 0.003 30.4 7.0 65 28-96 15-87 (302)
406 TIGR02085 meth_trns_rumB 23S r 31.7 3.3E+02 0.0071 29.4 10.1 87 17-109 255-346 (374)
407 TIGR02470 sucr_synth sucrose s 31.6 4.4E+02 0.0096 31.8 11.8 65 64-134 644-709 (784)
408 PRK04457 spermidine synthase; 31.6 1.4E+02 0.003 30.7 6.9 52 17-71 90-144 (262)
409 cd08194 Fe-ADH6 Iron-containin 31.5 2.7E+02 0.0058 29.9 9.4 50 18-69 24-86 (375)
410 PLN00142 sucrose synthase 31.5 8E+02 0.017 29.9 13.9 75 51-134 657-732 (815)
411 TIGR02130 dapB_plant dihydrodi 31.5 2.9E+02 0.0063 29.1 9.2 59 62-122 67-128 (275)
412 cd06298 PBP1_CcpA_like Ligand- 31.4 1.9E+02 0.0042 27.9 7.7 60 31-96 19-86 (268)
413 cd00956 Transaldolase_FSA Tran 31.4 2.6E+02 0.0056 28.0 8.6 78 36-117 96-185 (211)
414 KOG0485 Transcription factor N 31.2 3E+02 0.0065 28.4 8.8 22 355-376 142-163 (268)
415 PRK02083 imidazole glycerol ph 31.2 3.8E+02 0.0082 27.0 9.9 76 50-127 155-243 (253)
416 PF05768 DUF836: Glutaredoxin- 31.2 1E+02 0.0022 25.7 4.8 65 50-129 16-81 (81)
417 smart00717 SANT SANT SWI3, AD 31.1 1.4E+02 0.0031 21.0 5.1 44 320-367 2-45 (49)
418 PRK04539 ppnK inorganic polyph 31.0 4E+02 0.0086 28.2 10.3 99 18-135 6-125 (296)
419 cd06309 PBP1_YtfQ_like Peripla 30.9 1.5E+02 0.0032 29.2 6.8 65 29-97 17-89 (273)
420 PRK06096 molybdenum transport 30.8 1.4E+02 0.0031 31.4 6.9 92 20-116 160-263 (284)
421 PRK06182 short chain dehydroge 30.8 2.1E+02 0.0046 28.4 8.0 76 17-96 3-82 (273)
422 PRK12656 fructose-6-phosphate 30.8 2.5E+02 0.0054 28.6 8.4 79 36-117 100-189 (222)
423 PRK15179 Vi polysaccharide bio 30.8 4.6E+02 0.01 31.1 11.7 106 17-133 548-658 (694)
424 cd06295 PBP1_CelR Ligand bindi 30.7 2.2E+02 0.0049 27.8 8.1 63 29-97 28-96 (275)
425 cd06289 PBP1_MalI_like Ligand- 30.7 2.5E+02 0.0053 27.1 8.2 63 29-96 17-87 (268)
426 cd06285 PBP1_LacI_like_7 Ligan 30.6 2.2E+02 0.0048 27.7 8.0 62 29-96 17-86 (265)
427 cd06297 PBP1_LacI_like_12 Liga 30.6 2.2E+02 0.0048 28.0 8.0 61 30-96 18-86 (269)
428 PRK09140 2-dehydro-3-deoxy-6-p 30.6 2.6E+02 0.0057 27.8 8.5 90 35-127 5-99 (206)
429 PRK14569 D-alanyl-alanine synt 30.5 1.4E+02 0.003 31.0 6.7 55 16-72 2-65 (296)
430 cd06293 PBP1_LacI_like_11 Liga 30.5 2.5E+02 0.0055 27.4 8.3 64 28-96 16-86 (269)
431 cd06323 PBP1_ribose_binding Pe 30.3 2.1E+02 0.0046 27.6 7.7 62 31-97 19-89 (268)
432 cd04731 HisF The cyclase subun 30.3 2.2E+02 0.0047 28.5 7.9 69 47-117 26-100 (243)
433 cd00532 MGS-like MGS-like doma 30.2 3E+02 0.0065 24.3 8.0 27 22-48 6-32 (112)
434 PRK12595 bifunctional 3-deoxy- 30.2 3E+02 0.0066 29.9 9.5 83 32-116 216-321 (360)
435 cd03313 enolase Enolase: Enola 30.1 2.6E+02 0.0055 30.8 9.0 105 24-129 210-347 (408)
436 cd08556 GDPD Glycerophosphodie 30.0 3.2E+02 0.0069 25.3 8.6 35 81-116 151-187 (189)
437 cd06322 PBP1_ABC_sugar_binding 30.0 2.2E+02 0.0048 27.7 7.8 62 30-95 18-87 (267)
438 cd06346 PBP1_ABC_ligand_bindin 29.9 3.7E+02 0.0081 27.3 9.8 61 31-96 155-226 (312)
439 PRK05693 short chain dehydroge 29.9 2.5E+02 0.0054 27.9 8.3 75 18-96 2-80 (274)
440 TIGR00735 hisF imidazoleglycer 29.7 4.3E+02 0.0094 26.8 10.1 65 50-116 157-228 (254)
441 PF01113 DapB_N: Dihydrodipico 29.7 1E+02 0.0023 27.8 5.0 74 18-97 1-100 (124)
442 PLN02846 digalactosyldiacylgly 29.7 3.2E+02 0.0069 30.8 9.8 103 17-133 259-362 (462)
443 cd08170 GlyDH Glycerol dehydro 29.6 2.1E+02 0.0046 30.3 8.1 72 18-95 23-108 (351)
444 PRK13111 trpA tryptophan synth 29.6 3.4E+02 0.0073 28.1 9.3 98 20-118 121-229 (258)
445 TIGR00959 ffh signal recogniti 29.6 5E+02 0.011 29.0 11.2 55 16-72 127-191 (428)
446 cd02809 alpha_hydroxyacid_oxid 29.5 4.9E+02 0.011 27.1 10.6 69 46-117 179-256 (299)
447 cd06358 PBP1_NHase Type I peri 29.5 2.6E+02 0.0057 28.6 8.6 73 19-96 134-221 (333)
448 cd01572 QPRTase Quinolinate ph 29.5 4.1E+02 0.009 27.6 10.0 91 19-116 154-253 (268)
449 TIGR00236 wecB UDP-N-acetylglu 29.5 6E+02 0.013 26.5 11.4 47 82-133 286-333 (365)
450 PRK14024 phosphoribosyl isomer 29.4 2.8E+02 0.0061 28.0 8.6 76 50-127 148-238 (241)
451 TIGR01425 SRP54_euk signal rec 29.3 3.4E+02 0.0075 30.3 9.8 54 17-72 128-191 (429)
452 PRK02290 3-dehydroquinate synt 29.3 2.8E+02 0.0061 30.2 8.8 68 64-131 89-158 (344)
453 PRK05458 guanosine 5'-monophos 29.2 1.2E+02 0.0026 32.6 6.1 51 63-115 111-166 (326)
454 COG1091 RfbD dTDP-4-dehydrorha 29.2 1.2E+02 0.0025 32.1 5.9 55 18-75 1-62 (281)
455 PRK10446 ribosomal protein S6 29.1 1E+02 0.0022 31.8 5.5 55 19-73 2-67 (300)
456 TIGR01306 GMP_reduct_2 guanosi 29.1 7.5E+02 0.016 26.6 12.2 96 17-116 108-226 (321)
457 TIGR03087 stp1 sugar transfera 29.1 3.7E+02 0.0081 28.4 9.9 62 64-133 298-361 (397)
458 PRK10703 DNA-binding transcrip 28.7 2.2E+02 0.0048 29.1 7.9 64 30-96 78-147 (341)
459 PRK05718 keto-hydroxyglutarate 28.6 5.3E+02 0.011 25.9 10.2 98 17-118 16-136 (212)
460 PRK13849 putative crown gall t 28.6 2.2E+02 0.0048 28.6 7.7 53 16-72 29-92 (231)
461 PF02581 TMP-TENI: Thiamine mo 28.4 4.3E+02 0.0092 25.2 9.3 68 45-116 100-176 (180)
462 TIGR00479 rumA 23S rRNA (uraci 28.4 4.9E+02 0.011 28.4 10.9 78 18-97 315-397 (431)
463 PRK09490 metH B12-dependent me 28.3 2E+02 0.0044 36.3 8.6 110 18-132 752-876 (1229)
464 cd01573 modD_like ModD; Quinol 28.3 4.1E+02 0.0089 27.7 9.7 91 20-116 155-257 (272)
465 PRK03562 glutathione-regulated 28.2 3E+02 0.0066 31.9 9.6 89 17-115 423-516 (621)
466 PF13407 Peripla_BP_4: Peripla 28.2 1.7E+02 0.0036 28.5 6.6 93 29-134 16-117 (257)
467 cd06301 PBP1_rhizopine_binding 28.1 2.8E+02 0.0062 27.0 8.2 63 31-97 19-90 (272)
468 cd06299 PBP1_LacI_like_13 Liga 28.1 3.2E+02 0.0069 26.4 8.5 63 29-97 17-87 (265)
469 cd01568 QPRTase_NadC Quinolina 28.1 2.1E+02 0.0045 29.7 7.5 91 19-116 153-254 (269)
470 TIGR01304 IMP_DH_rel_2 IMP deh 28.0 6.3E+02 0.014 27.7 11.4 63 49-115 143-214 (369)
471 COG2200 Rtn c-di-GMP phosphodi 28.0 5.9E+02 0.013 25.9 10.7 97 29-128 137-249 (256)
472 TIGR00096 probable S-adenosylm 28.0 1.8E+02 0.0039 30.5 7.1 87 18-109 26-119 (276)
473 cd06313 PBP1_ABC_sugar_binding 28.0 2.3E+02 0.0049 28.1 7.6 65 29-97 17-89 (272)
474 cd06290 PBP1_LacI_like_9 Ligan 27.9 2.9E+02 0.0062 26.8 8.2 62 30-97 18-86 (265)
475 PRK10060 RNase II stability mo 27.9 4.1E+02 0.0088 30.9 10.6 99 28-129 541-655 (663)
476 cd08171 GlyDH-like2 Glycerol d 27.9 2.4E+02 0.0053 29.9 8.2 72 18-95 23-109 (345)
477 COG2070 Dioxygenases related t 27.8 3E+02 0.0065 29.6 8.8 79 34-115 120-211 (336)
478 PF00731 AIRC: AIR carboxylase 27.8 4.3E+02 0.0094 25.4 9.0 77 19-97 2-87 (150)
479 PF09456 RcsC: RcsC Alpha-Beta 27.7 1.2E+02 0.0025 27.0 4.7 88 21-130 3-90 (92)
480 PRK12727 flagellar biosynthesi 27.7 3.8E+02 0.0082 31.1 10.0 55 17-72 380-437 (559)
481 PRK13586 1-(5-phosphoribosyl)- 27.7 2.8E+02 0.006 28.2 8.2 66 49-116 147-217 (232)
482 PRK14114 1-(5-phosphoribosyl)- 27.6 2.1E+02 0.0047 29.2 7.4 66 49-116 145-222 (241)
483 PRK10355 xylF D-xylose transpo 27.4 2.3E+02 0.0051 29.5 7.9 64 29-96 43-114 (330)
484 COG1568 Predicted methyltransf 27.4 54 0.0012 34.9 3.0 25 19-43 177-201 (354)
485 PRK06101 short chain dehydroge 27.3 2.6E+02 0.0057 27.2 7.8 68 18-87 2-69 (240)
486 PRK07206 hypothetical protein; 27.2 5.7E+02 0.012 27.4 11.0 27 18-45 3-29 (416)
487 cd06319 PBP1_ABC_sugar_binding 27.2 2.8E+02 0.0061 27.0 8.0 61 31-95 19-87 (277)
488 cd01538 PBP1_ABC_xylose_bindin 27.2 2.9E+02 0.0062 27.6 8.3 63 30-97 18-89 (288)
489 PRK14723 flhF flagellar biosyn 27.1 3.5E+02 0.0076 32.6 9.9 98 18-116 216-330 (767)
490 cd03788 GT1_TPS Trehalose-6-Ph 27.0 3.9E+02 0.0086 29.5 9.9 73 49-133 350-426 (460)
491 PRK00771 signal recognition pa 26.9 6.4E+02 0.014 28.2 11.5 55 17-72 123-184 (437)
492 cd01542 PBP1_TreR_like Ligand- 26.8 2.4E+02 0.0052 27.2 7.4 62 29-96 17-86 (259)
493 cd06279 PBP1_LacI_like_3 Ligan 26.6 2.9E+02 0.0064 27.4 8.2 62 29-96 22-87 (283)
494 PRK05742 nicotinate-nucleotide 26.5 3.3E+02 0.0071 28.6 8.6 91 20-116 163-260 (277)
495 PRK03522 rumB 23S rRNA methylu 26.5 4E+02 0.0086 27.9 9.4 78 17-99 195-277 (315)
496 COG0421 SpeE Spermidine syntha 26.4 1.6E+02 0.0034 31.0 6.3 55 18-75 101-161 (282)
497 PRK10481 hypothetical protein; 26.4 3.2E+02 0.007 27.9 8.3 76 15-93 127-211 (224)
498 PRK13125 trpA tryptophan synth 26.4 5.3E+02 0.011 26.0 10.0 67 64-130 31-124 (244)
499 cd01147 HemV-2 Metal binding p 26.3 1.6E+02 0.0034 29.1 6.1 35 62-97 73-107 (262)
500 TIGR00417 speE spermidine synt 26.3 1.8E+02 0.0038 29.9 6.6 55 18-75 97-157 (270)
No 1
>PLN03162 golden-2 like transcription factor; Provisional
Probab=100.00 E-value=4.4e-70 Score=556.32 Aligned_cols=238 Identities=44% Similarity=0.758 Sum_probs=186.1
Q ss_pred cccCCCCceecCHHHHHHHHHHHHHhCCCCCCChHHHhhcCCCCCCHHHHHHhhhhhhhhhcccCCccc-ccCCchhhhh
Q 008626 312 KANRKKMKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHRRHILPKED-DRKWPHARDQ 390 (559)
Q Consensus 312 ~~~~kk~r~~Wt~~lh~~Fv~av~~lg~~~a~pk~il~~m~v~~lt~~~v~shlQkyr~~~~~~~~~~~-~~~~~~~~~~ 390 (559)
..++||+||+||+|||++||+||++||+++||||+||++|||+||||+||||||||||+++++++.++. +.+|.++|..
T Consensus 230 ~~g~KKpRLrWTpELH~rFVeAV~qLG~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~l~~rEaEa~swt~kr~~ 309 (526)
T PLN03162 230 APGKKKAKVDWTPELHRRFVHAVEQLGVEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRHLAAREAEAASWTHRRAY 309 (526)
T ss_pred CCCCCCCcccCCHHHHHHHHHHHHHhCcCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcccccchhhhhccchhhhhh
Confidence 456899999999999999999999999999999999999999999999999999999999999999988 5899998874
Q ss_pred hhc-----ccCCC----CCCcCCCCC-------------CCCCCCCCCCCCcccCCCCCCCCccccCCCCC---CCCCCC
Q 008626 391 MLR-----NYYPH----KPIMAFPPY-------------HSNHLVPTGPVYPVWGAPSNHLAAVQMWAPPG---YPPWQQ 445 (559)
Q Consensus 391 ~~~-----~~~~~----~~~~~~~~~-------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~ 445 (559)
... ++... .| ++||+. .+.|+.|...++||||||+++++.||||+++. .++|++
T Consensus 310 ~~~P~~rs~~~~g~p~~~p-igfP~~~P~P~~~~~~~P~~~~~Hhpf~rPLhVWGhPtvd~s~v~mWp~h~~~~p~pW~~ 388 (526)
T PLN03162 310 TQAPWPRSSRRDGLPYLVP-IHTPHIQPRPSMAMAMQPQLQTPHHPISTPLKVWGYPTVDHSNVHMWQQPAVATPSYWQA 388 (526)
T ss_pred ccCCcccCCCCCCCccccc-cCCCCCCCCCCccCCCCCCcccccccccccceeccCCCCCCcccccccccccCCCCCCCC
Confidence 431 12211 23 555542 12244344457899999999999999999844 467999
Q ss_pred CC--CCCCCCCCCCCCCCCCCCCCCCCCCCCC------CCCCCCCCCCCC---CCCC--------------------CCC
Q 008626 446 AE--SWNWKPYPGMPADAWGCPVMPLPNGPYS------SFPQGASGYHNS---GVDD--------------------NSY 494 (559)
Q Consensus 446 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~---~~~~--------------------~~~ 494 (559)
.+ ||| +||.+..|. -|+||+|.|...+. ..|+-.|+|..+ |+.| .+.
T Consensus 389 ~Dp~fW~-h~~~~~~a~-~gtpc~p~pm~Rfp~ppv~~G~p~~~P~~p~~~~yy~~d~~a~~~~~~~~~~~~~~~~~~~~ 466 (526)
T PLN03162 389 ADGSYWQ-HPATGYDAF-SARACYPHPMQRVPLGTTHAGLPIMAPGFPDESCYYGDDMLAASMYLCNQSYDSEIGRAAGV 466 (526)
T ss_pred CCcchhh-cccccCccc-cCCcccCchhhhCCCCCCCCCCccccCCCCchhhcccccchhhcccccccccccccccccch
Confidence 75 886 478876543 39999997753211 112222233221 1211 112
Q ss_pred CCCCCcccCCCchHHHHHHHHHHhhCCCccCCCCCCCCchhHHHHHHHHcCCCCCCCC
Q 008626 495 AMPQNSVDLHPAEEVIDKVVKEAISKPWLPLPLGLKPPSADSVLAELSRQGISTIPPR 552 (559)
Q Consensus 495 ~~~~~~~~~~~~~e~~d~~~~~~~~~pw~plp~glk~p~~~~v~~el~~qg~~~~p~~ 552 (559)
...++++++|||||+|||||||||+||||||||||||||+||||+|||||||++|||+
T Consensus 467 ~~~~~~~~~hpSkEsiDAAIgdvLskPWlPlPLGLKpPSldsVm~ELqRQGi~~vpp~ 524 (526)
T PLN03162 467 AACSKPIETHLSKEVLDAAIGEALANPWTPPPLGLKPPSMEGVIAELQRQGINTVPPS 524 (526)
T ss_pred hhcccccccCccHHHHHHHHHHHhhCCCCCCCcCCCCccHHHHHHHHHHcccCCCCCC
Confidence 2245899999999999999999999999999999999999999999999999999996
No 2
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.85 E-value=1e-20 Score=182.09 Aligned_cols=159 Identities=23% Similarity=0.319 Sum_probs=138.1
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCc
Q 008626 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLP 90 (559)
Q Consensus 15 p~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diP 90 (559)
+.+.-|.|||||..+++.|..+|+..||+|.++.++++.|..... ..+.++|+|++||+ ++|.+|.+++. .+|
T Consensus 2 ~~~~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~~--~~pGclllDvrMPg-~sGlelq~~L~~~~~~~P 78 (202)
T COG4566 2 PREPLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAPL--DRPGCLLLDVRMPG-MSGLELQDRLAERGIRLP 78 (202)
T ss_pred CCCCeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhccC--CCCCeEEEecCCCC-CchHHHHHHHHhcCCCCC
Confidence 455789999999999999999999999999999999999999666 78999999999999 99999999885 799
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHhcCCC--------CccCCCcHHHHHHHHHHhhhh
Q 008626 91 TIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGGS--------ALSDSLKPVKESVVSMLHLKL 162 (559)
Q Consensus 91 VImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~~~~~~--------~~s~~Lt~re~eVl~li~~~~ 162 (559)
||++|+++|.....+|++.||.|||.||++..+|+++|++++++....... ..+.+||++|++|++.+..+.
T Consensus 79 VIfiTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~~~~~~~~~~~~~~~~~~l~tLT~RERqVl~~vV~G~ 158 (202)
T COG4566 79 VIFLTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALARDASRRAEADRQAAIRARLATLTPRERQVLDLVVRGL 158 (202)
T ss_pred EEEEeCCCChHHHHHHHHcchhhHHhCCCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHcCc
Confidence 999999999999999999999999999999999999999998764322221 126789999999999999888
Q ss_pred cccc--cccccccccc
Q 008626 163 ENGE--SKNEKSENTE 176 (559)
Q Consensus 163 ~~~e--~E~EIs~~~e 176 (559)
.|++ .+..||+-|-
T Consensus 159 ~NKqIA~dLgiS~rTV 174 (202)
T COG4566 159 MNKQIAFDLGISERTV 174 (202)
T ss_pred ccHHHHHHcCCchhhH
Confidence 7776 3444554443
No 3
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.83 E-value=5e-20 Score=183.62 Aligned_cols=115 Identities=21% Similarity=0.304 Sum_probs=110.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-----CCcEE
Q 008626 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-----DLPTI 92 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-----diPVI 92 (559)
++|||||||+.++..|...|+..||+|.++.++++|++.+.. . ||+||+|+.||+ ++|+++++.+| .+|||
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~--~-~dlviLD~~lP~-~dG~~~~~~iR~~~~~~~PIi 76 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAARE--Q-PDLVLLDLMLPD-LDGLELCRRLRAKKGSGPPII 76 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--C-CCEEEEECCCCC-CCHHHHHHHHHhhcCCCCcEE
Confidence 489999999999999999999999999999999999999999 7 999999999999 99999999997 48899
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008626 93 ITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 136 (559)
Q Consensus 93 mLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~ 136 (559)
|+|+.++.+....++++||+|||+|||+++||.++|+.++|+..
T Consensus 77 ~Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~~ 120 (229)
T COG0745 77 VLTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRNA 120 (229)
T ss_pred EEECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcCc
Confidence 99999999999999999999999999999999999999998864
No 4
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=99.80 E-value=4.4e-20 Score=146.86 Aligned_cols=55 Identities=64% Similarity=0.988 Sum_probs=52.8
Q ss_pred CCceecCHHHHHHHHHHHHHhCC-CCCCChHHHhhcCCCCCCHHHHHHhhhhhhhh
Q 008626 317 KMKVDWTPELHKKFVQAVEQLGV-DQAIPSRILELMKVEGLTRHNVASHLQKYRMH 371 (559)
Q Consensus 317 k~r~~Wt~~lh~~Fv~av~~lg~-~~a~pk~il~~m~v~~lt~~~v~shlQkyr~~ 371 (559)
|+|+.||+|+|++|++||++||. +.|+||.|+++|++++||+.+|+|||||||+.
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k 56 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK 56 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 67999999999999999999995 89999999999999999999999999999975
No 5
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.78 E-value=3.1e-18 Score=185.32 Aligned_cols=118 Identities=27% Similarity=0.434 Sum_probs=112.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcE
Q 008626 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPT 91 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPV 91 (559)
++.+|||||||..++..+..+|+..||.|.++.++.+|++.+.+ ..||+||+|+.||+ ++|+++++.++ ++||
T Consensus 3 ~~~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~--~~~~lvl~Di~mp~-~~Gl~ll~~i~~~~~~~pV 79 (464)
T COG2204 3 MMARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSE--SPFDLVLLDIRMPG-MDGLELLKEIKSRDPDLPV 79 (464)
T ss_pred CcCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhc--CCCCEEEEecCCCC-CchHHHHHHHHhhCCCCCE
Confidence 44689999999999999999999999999999999999999999 57999999999999 99999999996 6999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008626 92 IITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 136 (559)
Q Consensus 92 ImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~ 136 (559)
|+||++++.+++.+|++.||.|||.|||+.++|..++.+++....
T Consensus 80 I~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~~ 124 (464)
T COG2204 80 IVMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELRE 124 (464)
T ss_pred EEEeCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999997644
No 6
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.76 E-value=3e-18 Score=185.38 Aligned_cols=118 Identities=22% Similarity=0.329 Sum_probs=111.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHh--hCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CC
Q 008626 17 GLRVLLLDQDSSAAAELKFKLE--AMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DL 89 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~--~~gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----di 89 (559)
|.+||||||.+.+|+.|+.++. .+||+|+ +|.||.+|++.+++ ..|||||+|+.||. |+|+++++.++ ++
T Consensus 1 MykVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~e--~~pDiviTDI~MP~-mdGLdLI~~ike~~p~~ 77 (475)
T COG4753 1 MYKVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQE--TQPDIVITDINMPG-MDGLDLIKAIKEQSPDT 77 (475)
T ss_pred CeeEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHHh--cCCCEEEEecCCCC-CcHHHHHHHHHHhCCCc
Confidence 5799999999999999999996 6799888 99999999999999 89999999999999 99999999996 79
Q ss_pred cEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHh
Q 008626 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFN 137 (559)
Q Consensus 90 PVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~~ 137 (559)
.+||+|++++.+.+.+|+++|+.|||+||++.++|.+++.++..+...
T Consensus 78 ~~IILSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~kl~~ 125 (475)
T COG4753 78 EFIILSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIGKLEE 125 (475)
T ss_pred eEEEEeccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999877544
No 7
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.76 E-value=4.6e-18 Score=167.20 Aligned_cols=157 Identities=21% Similarity=0.234 Sum_probs=133.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcE
Q 008626 18 LRVLLLDQDSSAAAELKFKLEAM-DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPT 91 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~-gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPV 91 (559)
++|+||||++.++..|..+|+.. +++|+ .+.++.++++.++. ..||+||+|+.||+ ++|+++++.|+ +++|
T Consensus 1 ~~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~~--~~pdvvl~Dl~mP~-~~G~e~~~~l~~~~p~~~v 77 (211)
T COG2197 1 IKVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLARE--LKPDVVLLDLSMPG-MDGLEALKQLRARGPDIKV 77 (211)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHhhh--cCCCEEEEcCCCCC-CChHHHHHHHHHHCCCCcE
Confidence 47999999999999999999876 48877 88889999999888 88999999999999 99999999986 7899
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHh----------c-C----CCCcc-CCCcHHHHHHH
Q 008626 92 IITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFN----------A-G----GSALS-DSLKPVKESVV 155 (559)
Q Consensus 92 ImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~~----------~-~----~~~~s-~~Lt~re~eVl 155 (559)
|++|.+.+...+.++++.||++|+.|..+.++|..+|+.+..+... . . ..... ..|++||.+|+
T Consensus 78 vvlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~RE~eVL 157 (211)
T COG2197 78 VVLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAGGTYLPPDIARKLAGLLPSSSAEAPLAELLTPRELEVL 157 (211)
T ss_pred EEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCeEeCHHHHHHHHhhcccccccccccCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999998744211 0 0 01111 36999999999
Q ss_pred HHHhhhhcccc--ccccccccccc
Q 008626 156 SMLHLKLENGE--SKNEKSENTEY 177 (559)
Q Consensus 156 ~li~~~~~~~e--~E~EIs~~~e~ 177 (559)
+++..+..+++ .+..+|+.|-+
T Consensus 158 ~lla~G~snkeIA~~L~iS~~TVk 181 (211)
T COG2197 158 RLLAEGLSNKEIAEELNLSEKTVK 181 (211)
T ss_pred HHHHCCCCHHHHHHHHCCCHhHHH
Confidence 99999999888 45555555543
No 8
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=99.74 E-value=4.5e-17 Score=139.68 Aligned_cols=107 Identities=23% Similarity=0.406 Sum_probs=102.7
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCC-EEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcEEEE
Q 008626 20 VLLLDQDSSAAAELKFKLEAMDY-IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTIIT 94 (559)
Q Consensus 20 VLIVDDD~~~~~~L~~~L~~~gy-~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPVImL 94 (559)
||||||++..+..+...|+..|| +|..+.++.+|++.+.. ..||+||+|+.|++ ++|+++++.|+ .+|+|++
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~--~~~d~iiid~~~~~-~~~~~~~~~i~~~~~~~~ii~~ 77 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKK--HPPDLIIIDLELPD-GDGLELLEQIRQINPSIPIIVV 77 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHH--STESEEEEESSSSS-SBHHHHHHHHHHHTTTSEEEEE
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcc--cCceEEEEEeeecc-ccccccccccccccccccEEEe
Confidence 79999999999999999999999 89999999999999999 78999999999999 99999999996 7999999
Q ss_pred ecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Q 008626 95 SNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQ 129 (559)
Q Consensus 95 Sa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq 129 (559)
|...+.....++++.||++||.||++.++|.++|+
T Consensus 78 t~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 78 TDEDDSDEVQEALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp ESSTSHHHHHHHHHTTESEEEESSSSHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhhC
Confidence 99999999999999999999999999999999874
No 9
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.74 E-value=2.2e-17 Score=161.76 Aligned_cols=116 Identities=16% Similarity=0.290 Sum_probs=108.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcE
Q 008626 18 LRVLLLDQDSSAAAELKFKLEAM-DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPT 91 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~-gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPV 91 (559)
++|||||||+.+.++-+.+++.. ||.++ ++.+.++|..++++ ..+||||+|+.||+ .+|++||..++ .+-|
T Consensus 1 i~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~~--~~pDLILLDiYmPd-~~Gi~lL~~ir~~~~~~DV 77 (224)
T COG4565 1 INVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEE--FKPDLILLDIYMPD-GNGIELLPELRSQHYPVDV 77 (224)
T ss_pred CcEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHHh--hCCCEEEEeeccCC-CccHHHHHHHHhcCCCCCE
Confidence 58999999999999999999986 89877 99999999999999 78899999999999 99999999997 6899
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008626 92 IITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 136 (559)
Q Consensus 92 ImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~ 136 (559)
|++|+..+.+++.+|++.||.|||+|||..+.|.+++.+-.+++.
T Consensus 78 I~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~~~r~ 122 (224)
T COG4565 78 IVITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYRQKRH 122 (224)
T ss_pred EEEeccchHHHHHHHHhcCchhheecceeHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999888776544
No 10
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=99.70 E-value=2.1e-16 Score=152.66 Aligned_cols=158 Identities=15% Similarity=0.215 Sum_probs=130.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCC-E-EEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCC---CHHHHHHHcC---
Q 008626 16 KGLRVLLLDQDSSAAAELKFKLEAMDY-I-VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTD---GSFKFLETAK--- 87 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy-~-V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~m---dG~eLLe~Ir--- 87 (559)
.+++||||||++..+..|+.+|...++ . |.++.++.+++..+.. ..||+||+|+.|++ . +|+++++.++
T Consensus 2 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~--~~~DlvllD~~l~~-~~~~~g~~~~~~l~~~~ 78 (216)
T PRK10840 2 NNMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPK--LDAHVLITDLSMPG-DKYGDGITLIKYIKRHF 78 (216)
T ss_pred CceEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHh--CCCCEEEEeCcCCC-CCCCCHHHHHHHHHHHC
Confidence 357999999999999999999987654 4 5589999999999988 67999999999998 6 8999999885
Q ss_pred -CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH----------hc-C-CCCccCCCcHHHHHH
Q 008626 88 -DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF----------NA-G-GSALSDSLKPVKESV 154 (559)
Q Consensus 88 -diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~----------~~-~-~~~~s~~Lt~re~eV 154 (559)
.+|||++|...+...+..+++.||++||.||.+.++|..+|+.+..+.. .. . .......|++||.+|
T Consensus 79 ~~~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~ev 158 (216)
T PRK10840 79 PSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKGKKFTPESVSRLLEKISAGGYGDKRLSPKESEV 158 (216)
T ss_pred CCCcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHCCCeecCHHHHHHHHHhccCCCccccCCHHHHHH
Confidence 5899999999999999999999999999999999999999988764311 00 0 111134699999999
Q ss_pred HHHHhhhhcccc--cccccccccc
Q 008626 155 VSMLHLKLENGE--SKNEKSENTE 176 (559)
Q Consensus 155 l~li~~~~~~~e--~E~EIs~~~e 176 (559)
+.++..+.++++ ++..||..|-
T Consensus 159 l~~~~~G~s~~eIA~~l~iS~~TV 182 (216)
T PRK10840 159 LRLFAEGFLVTEIAKKLNRSIKTI 182 (216)
T ss_pred HHHHHCCCCHHHHHHHHCCCHHHH
Confidence 999999988877 4555555443
No 11
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=99.66 E-value=2.1e-15 Score=147.45 Aligned_cols=120 Identities=11% Similarity=0.173 Sum_probs=109.5
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhC-CCE-EEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----
Q 008626 14 FPKGLRVLLLDQDSSAAAELKFKLEAM-DYI-VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---- 87 (559)
Q Consensus 14 ~p~glrVLIVDDD~~~~~~L~~~L~~~-gy~-V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir---- 87 (559)
||+.++||||||++.++..+..+|... +|. |..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++
T Consensus 1 ~~~~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~--~~pdlvllD~~mp~-~~gle~~~~l~~~~~ 77 (225)
T PRK10046 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIER--FKPGLILLDNYLPD-GRGINLLHELVQAHY 77 (225)
T ss_pred CCCcceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHh--cCCCEEEEeCCCCC-CcHHHHHHHHHhcCC
Confidence 566799999999999999999999875 785 5699999999999988 78999999999999 99999999985
Q ss_pred CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008626 88 DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 136 (559)
Q Consensus 88 diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~ 136 (559)
..+||++|+..+.+.+.++++.||++||.||++.++|..+++++..+..
T Consensus 78 ~~~iivls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~~ 126 (225)
T PRK10046 78 PGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKH 126 (225)
T ss_pred CCCEEEEEcCCCHHHHHHHHHcCccEEEECCcCHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999988876543
No 12
>PRK09483 response regulator; Provisional
Probab=99.66 E-value=2.3e-15 Score=142.73 Aligned_cols=147 Identities=16% Similarity=0.136 Sum_probs=126.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCc
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAM-DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLP 90 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~-gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diP 90 (559)
|++||||||++..+..+..+|+.. ++.++ .+.++.+++..+.. ..||+||+|+.+++ .+|+++++.++ ++|
T Consensus 1 m~~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~-~~g~~~~~~l~~~~~~~~ 77 (217)
T PRK09483 1 MINVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCRT--NAVDVVLMDMNMPG-IGGLEATRKILRYTPDVK 77 (217)
T ss_pred CeEEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCC-CCHHHHHHHHHHHCCCCe
Confidence 479999999999999999999875 88876 79999999999988 78999999999999 99999998885 699
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHh-------------c--CCCCccCCCcHHHHHHH
Q 008626 91 TIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFN-------------A--GGSALSDSLKPVKESVV 155 (559)
Q Consensus 91 VImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~~-------------~--~~~~~s~~Lt~re~eVl 155 (559)
||++|...+......++..||++|+.||++.++|..+++.++++... . ........|+++|.+++
T Consensus 78 ii~ls~~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~~vl 157 (217)
T PRK09483 78 IIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSGQRYIASDIAQQMALSQIEPATENPFASLSERELQIM 157 (217)
T ss_pred EEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCcccCHHHHHHHHHhhcccCCCccccccCHHHHHHH
Confidence 99999999999999999999999999999999999999888754210 0 01112356999999999
Q ss_pred HHHhhhhcccc
Q 008626 156 SMLHLKLENGE 166 (559)
Q Consensus 156 ~li~~~~~~~e 166 (559)
.++..+..+++
T Consensus 158 ~~~~~G~~~~~ 168 (217)
T PRK09483 158 LMITKGQKVNE 168 (217)
T ss_pred HHHHCCCCHHH
Confidence 99988877665
No 13
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=99.64 E-value=8.4e-15 Score=138.45 Aligned_cols=141 Identities=15% Similarity=0.247 Sum_probs=122.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC------CCc
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DLP 90 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir------diP 90 (559)
+.+||||||++..+..+...|+..||.|..+.++.+++..+.. ..||+||+|+.|++ ++|+++++.++ .+|
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~d~vi~d~~~~~-~~g~~~~~~l~~~~~~~~~~ 78 (226)
T TIGR02154 2 TRRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINE--RGPDLILLDWMLPG-TSGIELCRRLRRRPETRAIP 78 (226)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHh--cCCCEEEEECCCCC-CcHHHHHHHHHccccCCCCC
Confidence 4689999999999999999999889999999999999999988 77999999999999 99999999885 489
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHhcCCCC--------------------ccCCCcHH
Q 008626 91 TIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGGSA--------------------LSDSLKPV 150 (559)
Q Consensus 91 VImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~~~~~~~--------------------~s~~Lt~r 150 (559)
||++|+..+......+++.||++||.||++.++|..+++.++++........ ....|+++
T Consensus 79 ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~ 158 (226)
T TIGR02154 79 IIMLTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVLRRIRPQLSDEVIEVGDLSLDPVAHRVFRGGQPLSLGPT 158 (226)
T ss_pred EEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHhcccccccccCceEECCEEEEcCccEEEECCEEEEcCHH
Confidence 9999999999999999999999999999999999999999887642111100 01248899
Q ss_pred HHHHHHHHhh
Q 008626 151 KESVVSMLHL 160 (559)
Q Consensus 151 e~eVl~li~~ 160 (559)
|.+++.++..
T Consensus 159 E~~il~~l~~ 168 (226)
T TIGR02154 159 EFRLLHFFMT 168 (226)
T ss_pred HHHHHHHHHh
Confidence 9999988775
No 14
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=99.64 E-value=9.4e-15 Score=138.05 Aligned_cols=139 Identities=17% Similarity=0.337 Sum_probs=120.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcEEE
Q 008626 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTII 93 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPVIm 93 (559)
++||||||+...+..+...|+..||.|..+.++.+++..+.. ..||+||+|+.|++ ++|+++++.++ .+|||+
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~d~illd~~~~~-~~g~~~~~~l~~~~~~~pii~ 77 (222)
T PRK10643 1 MKILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLES--GHYSLVVLDLGLPD-EDGLHLLRRWRQKKYTLPVLI 77 (222)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh--CCCCEEEEECCCCC-CCHHHHHHHHHhcCCCCcEEE
Confidence 489999999999999999999999999999999999999988 67999999999999 99999999885 689999
Q ss_pred EecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHhcCCCC-------------------ccCCCcHHHHHH
Q 008626 94 TSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGGSA-------------------LSDSLKPVKESV 154 (559)
Q Consensus 94 LSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~~~~~~~-------------------~s~~Lt~re~eV 154 (559)
+|+..+......++..||++||.||++.++|..+++.++++........ ....|+++|.++
T Consensus 78 ls~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~E~~i 157 (222)
T PRK10643 78 LTARDTLEDRVAGLDVGADDYLVKPFALEELHARIRALIRRHQGQGENELQVGNLTLNLGRQQVWLDGQELILTPKEFAL 157 (222)
T ss_pred EECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhhhccccCCceEECCEEEEcCCCEEEECCEEEecCHHHHHH
Confidence 9999999999999999999999999999999999998887643211110 012477888888
Q ss_pred HHHHh
Q 008626 155 VSMLH 159 (559)
Q Consensus 155 l~li~ 159 (559)
+.++.
T Consensus 158 l~~l~ 162 (222)
T PRK10643 158 LSRLM 162 (222)
T ss_pred HHHHH
Confidence 87654
No 15
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=99.64 E-value=1.4e-15 Score=158.64 Aligned_cols=117 Identities=22% Similarity=0.318 Sum_probs=109.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-------C
Q 008626 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-------D 88 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-------d 88 (559)
..++||+|||.+..+..+...|+..+|+|..|.++++|++.+.+ +.+|+||+|++||+ |+|+++|.+|+ .
T Consensus 13 ~~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~~--~~~dlvllD~~mp~-mdg~ev~~~lk~~~p~t~~ 89 (360)
T COG3437 13 EKLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQE--EPPDLVLLDVRMPE-MDGAEVLNKLKAMSPSTRR 89 (360)
T ss_pred ccceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHhcc--cCCceEEeeccCCC-ccHHHHHHHHHhcCCcccc
Confidence 46899999999999999999999999999999999999999999 67999999999999 99999999985 6
Q ss_pred CcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008626 89 LPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (559)
Q Consensus 89 iPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~ 135 (559)
+|||++|+..+.+...+|+..||+|||.||++..+|..++...+..+
T Consensus 90 ip~i~lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~~~~q~k 136 (360)
T COG3437 90 IPVILLTAYADSEDRQRALEAGADDYLSKPISPKELVARVSSHLQLK 136 (360)
T ss_pred cceEEEeecCChHHHHHHHHhhHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999997555443
No 16
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=99.64 E-value=7e-15 Score=139.50 Aligned_cols=143 Identities=16% Similarity=0.246 Sum_probs=122.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcE
Q 008626 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPT 91 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPV 91 (559)
.+++||||||++..+..+...|...||.|..+.++.+++..+.. ..||+||+|+.|++ .+|+++++.++ ++||
T Consensus 2 ~~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~-~~g~~~~~~l~~~~~~~~i 78 (228)
T PRK11083 2 QQPTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQ--QPPDLVILDVGLPD-ISGFELCRQLLAFHPALPV 78 (228)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhc--CCCCEEEEeCCCCC-CCHHHHHHHHHhhCCCCCE
Confidence 34699999999999999999999899999999999999999887 77999999999999 99999999885 6899
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHhcCC--C-C------------------ccCCCcHH
Q 008626 92 IITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGG--S-A------------------LSDSLKPV 150 (559)
Q Consensus 92 ImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~~~~~--~-~------------------~s~~Lt~r 150 (559)
|++|+..+......++..||++||.||++.++|..+++.++++...... . . ....|+++
T Consensus 79 i~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~ 158 (228)
T PRK11083 79 IFLTARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRRVKKFAAPSPVIRIGHFELDEPAARISYFGTPLTLTRY 158 (228)
T ss_pred EEEEcCCcHHHHHHHhhcCCCeEEECCCCHHHHHHHHHHHHCccccccCCCceeEECCEEEecCccEEEECCEEeecCHH
Confidence 9999999988999999999999999999999999999988766322100 0 0 01248899
Q ss_pred HHHHHHHHhhh
Q 008626 151 KESVVSMLHLK 161 (559)
Q Consensus 151 e~eVl~li~~~ 161 (559)
|.+++.++...
T Consensus 159 E~~il~~l~~~ 169 (228)
T PRK11083 159 EFLLLKTLLLS 169 (228)
T ss_pred HHHHHHHHHhC
Confidence 99999888764
No 17
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=99.64 E-value=7.9e-15 Score=128.68 Aligned_cols=115 Identities=22% Similarity=0.360 Sum_probs=103.1
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHH-HHHHHhhcCCC-CeeEEEEecCCCCCCCHHHHHHHcC----C
Q 008626 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNEN-EALSAFSDKPE-NFHVAIVEVTTSNTDGSFKFLETAK----D 88 (559)
Q Consensus 15 p~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~-eAL~~Lre~~~-~pDLVIvDv~MPd~mdG~eLLe~Ir----d 88 (559)
+...+||||||++..+..+..+|...||.|..+.++. +|++.++. . .||+||+|+.||+ ++|+++++.++ .
T Consensus 3 ~~~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~~--~~~~dlii~D~~mp~-~~G~~~~~~l~~~~~~ 79 (130)
T COG0784 3 LSGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRE--LPQPDLILLDINMPG-MDGIELLRRLRARGPN 79 (130)
T ss_pred CCCcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHHh--CCCCCEEEEeCCCCC-CCHHHHHHHHHhCCCC
Confidence 3468999999999999999999999999999999995 99999998 6 4999999999999 99999999997 4
Q ss_pred CcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHH-HHHHHHHHH
Q 008626 89 LPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDK-LRNLWQHVV 132 (559)
Q Consensus 89 iPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~ee-L~~iIq~vl 132 (559)
+|+|++|++........++..|+++|+.||+...+ |...+.+.+
T Consensus 80 ~pvv~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~ 124 (130)
T COG0784 80 IPVILLTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRLL 124 (130)
T ss_pred CCEEEEEcCcCHHHHHHHHHcCCCeEEcCCCCcHHHHHHHHHHHH
Confidence 89999999999887888899999999999977766 677766544
No 18
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=99.63 E-value=9e-15 Score=139.67 Aligned_cols=114 Identities=17% Similarity=0.263 Sum_probs=107.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC---CCcEEEE
Q 008626 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTIIT 94 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir---diPVImL 94 (559)
.+||||||++..+..+...|...||.+..+.++.+++..+.. ..||+||+|+.||+ ++|+++++.++ .+|+|++
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~-~~g~~~~~~lr~~~~~pvi~l 78 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAAT--RKPDLIILDLGLPD-GDGIEFIRDLRQWSAIPVIVL 78 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCC-CCHHHHHHHHHcCCCCCEEEE
Confidence 589999999999999999999999999999999999998877 67999999999999 99999999886 6999999
Q ss_pred ecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008626 95 SNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 95 Sa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
|+..+.+...++++.||++||.||++.++|..+++.++++
T Consensus 79 t~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~~ 118 (225)
T PRK10529 79 SARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 (225)
T ss_pred ECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999887765
No 19
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=99.63 E-value=1e-14 Score=137.89 Aligned_cols=141 Identities=18% Similarity=0.306 Sum_probs=121.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcEEE
Q 008626 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTII 93 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPVIm 93 (559)
|+||||||++..+..+...|...||.+..+.++.+++..+.. ..||+||+|+.|++ ++|+++++.++ ++|||+
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~-~~g~~~~~~i~~~~~~~~ii~ 77 (219)
T PRK10336 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYS--APYDAVILDLTLPG-MDGRDILREWREKGQREPVLI 77 (219)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--CCCCEEEEECCCCC-CCHHHHHHHHHhcCCCCcEEE
Confidence 489999999999999999999889999999999999999887 67999999999999 99999999885 689999
Q ss_pred EecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHhcCCC-------------------CccCCCcHHHHHH
Q 008626 94 TSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGGS-------------------ALSDSLKPVKESV 154 (559)
Q Consensus 94 LSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~~~~~~-------------------~~s~~Lt~re~eV 154 (559)
+|+..+.+....++..||++|+.||++.++|..+++.++++....... ...-.|+++|.++
T Consensus 78 lt~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~E~~i 157 (219)
T PRK10336 78 LTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFAL 157 (219)
T ss_pred EECCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHHHHHhccccCCCCceeECCEEEEcccCEEEECCEEEecCHHHHHH
Confidence 999999999999999999999999999999999999888753211000 0012488999999
Q ss_pred HHHHhhh
Q 008626 155 VSMLHLK 161 (559)
Q Consensus 155 l~li~~~ 161 (559)
+.++..+
T Consensus 158 l~~l~~~ 164 (219)
T PRK10336 158 LELLMRN 164 (219)
T ss_pred HHHHHhC
Confidence 9887765
No 20
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=99.62 E-value=1.6e-14 Score=134.76 Aligned_cols=145 Identities=21% Similarity=0.226 Sum_probs=122.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhC-CCE-EEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CCcEEE
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAM-DYI-VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTII 93 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~-gy~-V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-diPVIm 93 (559)
|++||||||++..+..|...|... ++. +..+.++.+++..+.. ..||+||+|+.+++ .+|+++++.++ .+|||+
T Consensus 1 m~~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~~--~~~dlvi~d~~~~~-~~g~~~~~~l~~~~~vi~ 77 (196)
T PRK10360 1 MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPG--RGVQVCICDISMPD-ISGLELLSQLPKGMATIM 77 (196)
T ss_pred CeEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCC-CCHHHHHHHHccCCCEEE
Confidence 368999999999999999999854 666 4589999999999987 78999999999999 99999999987 799999
Q ss_pred EecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHh-------cCCCCccCCCcHHHHHHHHHHhhhhcc
Q 008626 94 TSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFN-------AGGSALSDSLKPVKESVVSMLHLKLEN 164 (559)
Q Consensus 94 LSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~~-------~~~~~~s~~Lt~re~eVl~li~~~~~~ 164 (559)
+|...+.+....++..||++|+.||++.++|..+++.++++... .........|+++|.+++.++..+..+
T Consensus 78 ~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~E~~il~~l~~g~~~ 155 (196)
T PRK10360 78 LSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAV 155 (196)
T ss_pred EECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCCeeeCHHHHHHHHhccccCCCHHHHHHHHHHHCCCCH
Confidence 99999999999999999999999999999999999988754210 000111346889999999988776543
No 21
>PRK11173 two-component response regulator; Provisional
Probab=99.62 E-value=1.1e-14 Score=141.18 Aligned_cols=116 Identities=13% Similarity=0.256 Sum_probs=108.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC---CCcEEE
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTII 93 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir---diPVIm 93 (559)
..+|||||||...+..+...|+..||.|..+.++.+++..+.. ..||+||+|+.||+ ++|+++++.++ .+|+|+
T Consensus 3 ~~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~-~~g~~~~~~lr~~~~~pii~ 79 (237)
T PRK11173 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE--NDINLVIMDINLPG-KNGLLLARELREQANVALMF 79 (237)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhh--CCCCEEEEcCCCCC-CCHHHHHHHHhcCCCCCEEE
Confidence 4689999999999999999999999999999999999999988 78999999999999 99999999986 699999
Q ss_pred EecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008626 94 TSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (559)
Q Consensus 94 LSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~ 135 (559)
+|+..+......++..||++||.||++.++|..+++.++++.
T Consensus 80 lt~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l~r~ 121 (237)
T PRK11173 80 LTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 (237)
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999998887663
No 22
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=99.62 E-value=2e-14 Score=136.52 Aligned_cols=141 Identities=14% Similarity=0.286 Sum_probs=121.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC---CCcEEEE
Q 008626 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTIIT 94 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir---diPVImL 94 (559)
|+||||||++..+..+...|...||.|..+.++.+++..+.. ..||+||+|+.|++ ++|+++++.++ ++|||++
T Consensus 1 m~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~~--~~~dlvi~d~~~~~-~~g~~~~~~l~~~~~~~ii~l 77 (223)
T PRK11517 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALK--DDYALIILDIMLPG-MDGWQILQTLRTAKQTPVICL 77 (223)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEECCCCC-CCHHHHHHHHHcCCCCCEEEE
Confidence 489999999999999999999999999999999999999987 78999999999999 99999999886 6999999
Q ss_pred ecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHhcCCCC------------------ccCCCcHHHHHHHH
Q 008626 95 SNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGGSA------------------LSDSLKPVKESVVS 156 (559)
Q Consensus 95 Sa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~~~~~~~------------------~s~~Lt~re~eVl~ 156 (559)
++..+.+...+++..||++||.||++.++|..+++.++++........ ..-.|+++|.+++.
T Consensus 78 s~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~E~~il~ 157 (223)
T PRK11517 78 TARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLW 157 (223)
T ss_pred ECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHccccCcCCeEEECCEEEEcCCCEEEECCEEEeCCHHHHHHHH
Confidence 999999999999999999999999999999999998886532211100 01248889988888
Q ss_pred HHhhh
Q 008626 157 MLHLK 161 (559)
Q Consensus 157 li~~~ 161 (559)
++...
T Consensus 158 ~l~~~ 162 (223)
T PRK11517 158 LLASR 162 (223)
T ss_pred HHHhC
Confidence 87653
No 23
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=99.62 E-value=2.1e-14 Score=137.77 Aligned_cols=140 Identities=13% Similarity=0.235 Sum_probs=120.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC------CCcE
Q 008626 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DLPT 91 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir------diPV 91 (559)
.+||||||++..+..+...|+..||++..+.++.+++..+.. ..||+||+|+.|++ ++|+++++.++ .+||
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~-~~g~~~~~~l~~~~~~~~~pv 79 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE--PWPDLILLDWMLPG-GSGIQFIKHLKRESMTRDIPV 79 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--cCCCEEEEeCCCCC-CCHHHHHHHHHhccccCCCCE
Confidence 689999999999999999999889999999999999999987 78999999999999 99999998885 4899
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHhcCCCC--------------------ccCCCcHHH
Q 008626 92 IITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGGSA--------------------LSDSLKPVK 151 (559)
Q Consensus 92 ImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~~~~~~~--------------------~s~~Lt~re 151 (559)
|++|+..+.....+++++||++||.||++.++|..+++.++++........ ....|+++|
T Consensus 80 i~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~E 159 (229)
T PRK10161 80 VMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTE 159 (229)
T ss_pred EEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhcccccCcCceeEECCEEEEcCcCEEEECCEEEEcCHHH
Confidence 999999999999999999999999999999999999999887632110000 012488888
Q ss_pred HHHHHHHhh
Q 008626 152 ESVVSMLHL 160 (559)
Q Consensus 152 ~eVl~li~~ 160 (559)
.+++.++..
T Consensus 160 ~~ll~~l~~ 168 (229)
T PRK10161 160 FKLLHFFMT 168 (229)
T ss_pred HHHHHHHHh
Confidence 888887764
No 24
>PLN03029 type-a response regulator protein; Provisional
Probab=99.62 E-value=2.3e-14 Score=141.56 Aligned_cols=119 Identities=22% Similarity=0.342 Sum_probs=107.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCC------------------CCeeEEEEecCCCCCCC
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKP------------------ENFHVAIVEVTTSNTDG 78 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~------------------~~pDLVIvDv~MPd~md 78 (559)
.++||||||+...+..+..+|+..||+|.++.++.+|+..+.... ..+||||+|+.||+ ++
T Consensus 8 ~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~mp~-~~ 86 (222)
T PLN03029 8 QFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYCMPG-MT 86 (222)
T ss_pred CccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCCCCC-CC
Confidence 589999999999999999999999999999999999999986521 24679999999999 99
Q ss_pred HHHHHHHcC------CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008626 79 SFKFLETAK------DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 136 (559)
Q Consensus 79 G~eLLe~Ir------diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~ 136 (559)
|+++++.++ ++|||++|+........++++.||++||.||++..+|..++.++++...
T Consensus 87 G~e~l~~ir~~~~~~~ipvIils~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~~~~~~~~~ 150 (222)
T PLN03029 87 GYDLLKKIKESSSLRNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPHMMKTKS 150 (222)
T ss_pred HHHHHHHHHhccccCCCcEEEEeCCCCHHHHHHHHHhCchheEECCCCHHHHHHHHHHHHHHHH
Confidence 999999885 5899999999999999999999999999999999999888888776543
No 25
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=99.62 E-value=1.2e-14 Score=138.78 Aligned_cols=114 Identities=17% Similarity=0.326 Sum_probs=107.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcEEE
Q 008626 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTII 93 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPVIm 93 (559)
|+||||||+...+..+...|+..||.|..+.++.+|+..+.. ..||+||+|+.||+ ++|+++++.++ ++|||+
T Consensus 1 m~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~--~~~dlvild~~l~~-~~g~~l~~~lr~~~~~~pii~ 77 (223)
T PRK10816 1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNE--HLPDIAIVDLGLPD-EDGLSLIRRWRSNDVSLPILV 77 (223)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhh--CCCCEEEEECCCCC-CCHHHHHHHHHhcCCCCCEEE
Confidence 489999999999999999999999999999999999999988 78999999999999 99999998885 689999
Q ss_pred EecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008626 94 TSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 94 LSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
+|+..+.+....+++.||++||.||++.++|..+++.++++
T Consensus 78 ls~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~~ 118 (223)
T PRK10816 78 LTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 (223)
T ss_pred EEcCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999988765
No 26
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=99.61 E-value=2.9e-14 Score=136.17 Aligned_cols=114 Identities=20% Similarity=0.333 Sum_probs=105.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC---CCcEEEE
Q 008626 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTIIT 94 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir---diPVImL 94 (559)
.+||||||++..+..+...|...||.|..+.++.+++..+.. .||+||+|+.|++ ++|+++++.++ .+|||++
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~---~~d~vl~d~~~~~-~~g~~~~~~l~~~~~~~ii~l 77 (232)
T PRK10955 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD---SIDLLLLDVMMPK-KNGIDTLKELRQTHQTPVIML 77 (232)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhhc---CCCEEEEeCCCCC-CcHHHHHHHHHhcCCCcEEEE
Confidence 589999999999999999999999999999999999998754 5999999999999 99999999886 4899999
Q ss_pred ecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008626 95 SNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (559)
Q Consensus 95 Sa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~ 135 (559)
|+..+......+++.||++||.||++.++|..+++.++++.
T Consensus 78 t~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 118 (232)
T PRK10955 78 TARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 (232)
T ss_pred ECCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999988764
No 27
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=99.61 E-value=2e-14 Score=134.96 Aligned_cols=143 Identities=17% Similarity=0.147 Sum_probs=122.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcEE
Q 008626 18 LRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTI 92 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPVI 92 (559)
|+||||||++..+..+...|+..||.++ .+.++.+++..+.. ..||+||+|+.+++ ++|+++++.++ ..|+|
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~-~~g~~~~~~l~~~~~~~~ii 77 (204)
T PRK09958 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVET--LKPDIVIIDVDIPG-VNGIQVLETLRKRQYSGIII 77 (204)
T ss_pred CcEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHc--cCCCEEEEeCCCCC-CCHHHHHHHHHhhCCCCeEE
Confidence 5899999999999999999998899987 79999999999988 78999999999999 99999999885 57899
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHh----------c--CCCCccCCCcHHHHHHHHHHhh
Q 008626 93 ITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFN----------A--GGSALSDSLKPVKESVVSMLHL 160 (559)
Q Consensus 93 mLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~~----------~--~~~~~s~~Lt~re~eVl~li~~ 160 (559)
++|+..+......++..||++|+.||++.++|..+++.++++... . ........|+++|.+++.++..
T Consensus 78 ~ls~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~E~~vl~~l~~ 157 (204)
T PRK09958 78 IVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILD 157 (204)
T ss_pred EEeCCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHHHHcCCcccCHHHHHHHHhccCCCcccccCCHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999988753110 0 0111224588999999988876
Q ss_pred hhc
Q 008626 161 KLE 163 (559)
Q Consensus 161 ~~~ 163 (559)
+..
T Consensus 158 g~~ 160 (204)
T PRK09958 158 GKD 160 (204)
T ss_pred CCC
Confidence 654
No 28
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=99.61 E-value=1.9e-14 Score=137.10 Aligned_cols=116 Identities=12% Similarity=0.239 Sum_probs=108.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC---CCcEEE
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTII 93 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir---diPVIm 93 (559)
.++|||||||......+...|...||.|..+.++.+|+..+.. ..||+||+|+.||+ ++|+++++.++ .+|+|+
T Consensus 2 ~~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~-~~g~~~~~~lr~~~~~~ii~ 78 (221)
T PRK10766 2 SYHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQN--QHVDLILLDINLPG-EDGLMLTRELRSRSTVGIIL 78 (221)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCC-CCHHHHHHHHHhCCCCCEEE
Confidence 3689999999999999999999999999999999999999987 67999999999999 99999999886 699999
Q ss_pred EecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008626 94 TSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (559)
Q Consensus 94 LSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~ 135 (559)
+++..+......+++.||+|||.||++.++|..+++.++++.
T Consensus 79 l~~~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i~~~~~r~ 120 (221)
T PRK10766 79 VTGRTDSIDRIVGLEMGADDYVTKPLELRELLVRVKNLLWRI 120 (221)
T ss_pred EECCCcHHHHHHHHHcCCCcEEeCCCCHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999998888663
No 29
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=99.61 E-value=2e-14 Score=137.69 Aligned_cols=114 Identities=13% Similarity=0.325 Sum_probs=107.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcEEE
Q 008626 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTII 93 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPVIm 93 (559)
|+||||||++..+..+...|...||.|..+.++.+++..+.. ..||+||+|+.|++ ++|+++++.++ ++|||+
T Consensus 1 m~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~~~~-~~g~~~~~~lr~~~~~~pii~ 77 (227)
T PRK09836 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMT--GDYDLIILDIMLPD-VNGWDIVRMLRSANKGMPILL 77 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhh--CCCCEEEEECCCCC-CCHHHHHHHHHhcCCCCCEEE
Confidence 489999999999999999999999999999999999998877 67999999999999 99999999886 689999
Q ss_pred EecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008626 94 TSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 94 LSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
+|+..+.+....+++.||++||.||++.++|..+++.++++
T Consensus 78 ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 118 (227)
T PRK09836 78 LTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 (227)
T ss_pred EEcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999888764
No 30
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=99.60 E-value=7e-14 Score=133.71 Aligned_cols=115 Identities=21% Similarity=0.353 Sum_probs=106.4
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCC-CCHHHHHHHcC----CCcEEE
Q 008626 19 RVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNT-DGSFKFLETAK----DLPTII 93 (559)
Q Consensus 19 rVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~-mdG~eLLe~Ir----diPVIm 93 (559)
+|||||||...+..+...|+..||.|..+.++.+++..+.. ..||+||+|+.|++. .+|+++++.++ ++|||+
T Consensus 2 ~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~~~g~~~~~~i~~~~~~~pii~ 79 (227)
T TIGR03787 2 RIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFRQ--RLPDLAIIDIGLGEEIDGGFMLCQDLRSLSATLPIIF 79 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHHh--CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 69999999999999999999999999999999999999988 779999999999972 27999998885 589999
Q ss_pred EecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008626 94 TSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (559)
Q Consensus 94 LSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~ 135 (559)
+|+..+.+....++++||++|+.||++.++|..+++.++++.
T Consensus 80 ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 121 (227)
T TIGR03787 80 LTARDSDFDTVSGLRLGADDYLTKDISLPHLLARITALFRRA 121 (227)
T ss_pred EECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999988764
No 31
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=99.59 E-value=9.5e-15 Score=136.71 Aligned_cols=109 Identities=22% Similarity=0.362 Sum_probs=104.3
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcEEEE
Q 008626 19 RVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTIIT 94 (559)
Q Consensus 19 rVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPVImL 94 (559)
..||||||..++..|...+++-||.|+++.+.++||..++. ..|..+++|+.|.+ .+|+.+++.|+ +..||++
T Consensus 11 ~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art--~~PayAvvDlkL~~-gsGL~~i~~lr~~~~d~rivvL 87 (182)
T COG4567 11 SLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAART--APPAYAVVDLKLGD-GSGLAVIEALRERRADMRIVVL 87 (182)
T ss_pred eeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHhc--CCCceEEEEeeecC-CCchHHHHHHHhcCCcceEEEE
Confidence 68999999999999999999999999999999999999999 88999999999999 99999999986 7999999
Q ss_pred ecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHH
Q 008626 95 SNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQH 130 (559)
Q Consensus 95 Sa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~ 130 (559)
|++.+..+.++|++.|||+||.||-+.+++..++..
T Consensus 88 TGy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~ 123 (182)
T COG4567 88 TGYASIATAVEAVKLGACDYLAKPADADDILAALLR 123 (182)
T ss_pred ecchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHhh
Confidence 999999999999999999999999999999987654
No 32
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=99.59 E-value=3.7e-14 Score=137.52 Aligned_cols=114 Identities=10% Similarity=0.192 Sum_probs=106.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC---CCcEEEE
Q 008626 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTIIT 94 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir---diPVImL 94 (559)
.+||||||+...+..|...|+..||.|..+.++.+|+..+.. ..||+||+|+.||+ ++|+++++.++ ..|+|++
T Consensus 2 ~~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~--~~~dlvild~~l~~-~~g~~~~~~ir~~~~~pii~l 78 (240)
T PRK10701 2 NKIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATILR--EQPDLVLLDIMLPG-KDGMTICRDLRPKWQGPIVLL 78 (240)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCCEEEE
Confidence 589999999999999999999999999999999999999988 78999999999999 99999999986 6899999
Q ss_pred ecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008626 95 SNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 95 Sa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
++..+......++..||+|||.||++.++|..+++.++++
T Consensus 79 ~~~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i~~~l~~ 118 (240)
T PRK10701 79 TSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ 118 (240)
T ss_pred ECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 9998888889999999999999999999999998887765
No 33
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.59 E-value=1.8e-14 Score=155.10 Aligned_cols=118 Identities=17% Similarity=0.331 Sum_probs=112.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC------CC
Q 008626 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DL 89 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir------di 89 (559)
...+||||||+...++.|+.+|...||+|..+.++.+|+..+.+ ..||+||+|+.||+ +||++++.+++ ++
T Consensus 131 ~~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e--~~~dlil~d~~mp~-~dg~el~~~lr~~~~t~~i 207 (435)
T COG3706 131 APKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAE--LPPDLVLLDANMPD-MDGLELCTRLRQLERTRDI 207 (435)
T ss_pred cCceEEEEcCcHHHHHHHHHHHHhccceeeeecCHHHHHHHHhc--CCCcEEEEecCCCc-cCHHHHHHHHhcccccccc
Confidence 45799999999999999999999999999999999999999999 79999999999999 99999999986 69
Q ss_pred cEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008626 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 136 (559)
Q Consensus 90 PVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~ 136 (559)
|||++++.++.+.+.+|++.|++|||+||+...+|..++...+++..
T Consensus 208 pii~~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~~~ 254 (435)
T COG3706 208 PIILLSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRRKR 254 (435)
T ss_pred cEEEEecccchHHHHHHHHcCCcceEecCCCHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999988887754
No 34
>PRK13856 two-component response regulator VirG; Provisional
Probab=99.58 E-value=4.5e-14 Score=137.77 Aligned_cols=114 Identities=18% Similarity=0.294 Sum_probs=105.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC---CCcEEEE
Q 008626 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTIIT 94 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir---diPVImL 94 (559)
.+||||||++..+..|...|+..||.|..+.++.+++..+.. ..||+||+|+.||+ ++|+++++.++ .+|+|++
T Consensus 2 ~~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~l~~-~~g~~l~~~i~~~~~~pii~l 78 (241)
T PRK13856 2 KHVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLAS--ETVDVVVVDLNLGR-EDGLEIVRSLATKSDVPIIII 78 (241)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhh--CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCcEEEE
Confidence 389999999999999999999999999999999999999988 78999999999999 99999999886 6999999
Q ss_pred ecC-CCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008626 95 SNI-HCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 95 Sa~-~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
|+. .+.....+++++||++||.||++.++|..+++.++++
T Consensus 79 t~~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~l~~ 119 (241)
T PRK13856 79 SGDRLEEADKVVALELGATDFIAKPFGTREFLARIRVALRV 119 (241)
T ss_pred ECCCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHHHHHHHhh
Confidence 985 4666778999999999999999999999999888765
No 35
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=99.57 E-value=6.3e-14 Score=135.57 Aligned_cols=115 Identities=17% Similarity=0.306 Sum_probs=108.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcEE
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTI 92 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPVI 92 (559)
..+|||||||...+..|...|+..||+|..+.++.+++..+.. ..||+||+|+.|++ ++|+++++.++ ++|||
T Consensus 5 ~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~-~~g~~~~~~lr~~~~~~pii 81 (239)
T PRK09468 5 NYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTR--ESFHLMVLDLMLPG-EDGLSICRRLRSQNNPTPII 81 (239)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCCCEE
Confidence 3689999999999999999999999999999999999999988 78999999999999 99999999885 68999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008626 93 ITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 93 mLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
++++..+......++..||++||.||++.++|..+++.++++
T Consensus 82 ~ls~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~~r 123 (239)
T PRK09468 82 MLTAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAVLRR 123 (239)
T ss_pred EEECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999888765
No 36
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=99.57 E-value=1.1e-13 Score=130.49 Aligned_cols=139 Identities=18% Similarity=0.331 Sum_probs=120.5
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcEEEEe
Q 008626 20 VLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTIITS 95 (559)
Q Consensus 20 VLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPVImLS 95 (559)
||||||++..+..+...|...||.+..+.++.+++..+.. ..||+||+|+.|++ ++|+++++.++ ++|||++|
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~-~~g~~~~~~l~~~~~~~~iivls 77 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLALK--DDYDLIILDVMLPG-MDGWQILQTLRRSGKQTPVLFLT 77 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCC-CCHHHHHHHHHccCCCCcEEEEE
Confidence 6899999999999999999999999999999999999988 78999999999999 99999999886 68999999
Q ss_pred cCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHhcCCCCc-------------------cCCCcHHHHHHHH
Q 008626 96 NIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGGSAL-------------------SDSLKPVKESVVS 156 (559)
Q Consensus 96 a~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~~~~~~~~-------------------s~~Lt~re~eVl~ 156 (559)
...+......++.+||++|+.||++.++|..+++.++++......... .-.|+++|.+++.
T Consensus 78 ~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~E~~il~ 157 (218)
T TIGR01387 78 ARDSVADKVKGLDLGADDYLVKPFSFSELLARVRTLLRRSHSLNSTVLEIADLRMDSVRHRVSRGNIRITLTRKEFQLLW 157 (218)
T ss_pred cCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhcccccCCCCeEEECCEEEEcccCEEEECCEEEeCCHHHHHHHH
Confidence 999999999999999999999999999999999988876432211100 1248899999988
Q ss_pred HHhhh
Q 008626 157 MLHLK 161 (559)
Q Consensus 157 li~~~ 161 (559)
++...
T Consensus 158 ~l~~~ 162 (218)
T TIGR01387 158 LLMRR 162 (218)
T ss_pred HHHhC
Confidence 87654
No 37
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=99.56 E-value=8.7e-14 Score=137.14 Aligned_cols=117 Identities=15% Similarity=0.248 Sum_probs=104.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCc
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAM-DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLP 90 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~-gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diP 90 (559)
|++||||||++.++..+..+|... ++.++ .+.++.+++..+......||+||+|+.||+ ++|+++++.++ ++|
T Consensus 1 m~~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~~~~~~DlvilD~~~p~-~~G~eli~~l~~~~~~~~ 79 (239)
T PRK10430 1 MINVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFNSDTPIDLILLDIYMQQ-ENGLDLLPVLHEAGCKSD 79 (239)
T ss_pred CeeEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhcCCCCCEEEEecCCCC-CCcHHHHHHHHhhCCCCC
Confidence 469999999999999999999864 78755 889999999988632256999999999999 99999999985 689
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008626 91 TIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 91 VImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
||++|+..+...+.+++..||++||.||++.++|..++..+..+
T Consensus 80 vI~ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~~~~~~ 123 (239)
T PRK10430 80 VIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQK 123 (239)
T ss_pred EEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998876654
No 38
>CHL00148 orf27 Ycf27; Reviewed
Probab=99.56 E-value=1.1e-13 Score=132.86 Aligned_cols=115 Identities=23% Similarity=0.386 Sum_probs=107.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC---CCcEEE
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTII 93 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir---diPVIm 93 (559)
+++||||||++..+..+...|...||.|..+.++.+++..+.. ..||+||+|+.|++ .+|+++++.++ ++|||+
T Consensus 6 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~~--~~~d~illd~~~~~-~~g~~~~~~l~~~~~~~ii~ 82 (240)
T CHL00148 6 KEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFRK--EQPDLVILDVMMPK-LDGYGVCQEIRKESDVPIIM 82 (240)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCcEEE
Confidence 4699999999999999999999889999999999999999887 67999999999999 99999998886 699999
Q ss_pred EecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008626 94 TSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 94 LSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
+|+..+......++..||++||.||++.++|..+++.++++
T Consensus 83 ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~ 123 (240)
T CHL00148 83 LTALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLRR 123 (240)
T ss_pred EECCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999998887755
No 39
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=99.55 E-value=2.2e-13 Score=127.69 Aligned_cols=147 Identities=14% Similarity=0.162 Sum_probs=121.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCc
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAM-DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLP 90 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~-gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diP 90 (559)
..+||||||++..+..+...|... ++.++ .+.++.+++..+.. ..||+||+|+.|++ .+|+++++.++ .+|
T Consensus 3 ~~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvild~~l~~-~~g~~~~~~l~~~~~~~~ 79 (210)
T PRK09935 3 PASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRT--RPVDLIIMDIDLPG-TDGFTFLKRIKQIQSTVK 79 (210)
T ss_pred cceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCC-CCHHHHHHHHHHhCCCCc
Confidence 468999999999999999999876 68876 78899999999887 78999999999999 99999999885 589
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHhc----------CC----CCccCCCcHHHHHHHH
Q 008626 91 TIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNA----------GG----SALSDSLKPVKESVVS 156 (559)
Q Consensus 91 VImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~~~----------~~----~~~s~~Lt~re~eVl~ 156 (559)
||++|+..+......++..||++|+.||++.++|..+++.++++.... .. ......++++|..++.
T Consensus 80 ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~re~~vl~ 159 (210)
T PRK09935 80 VLFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSGYTFFPSETLNYIKSNKCSTNSSTDTVLSNREVTILR 159 (210)
T ss_pred EEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHcCCceeCHHHHHHHHhcccccCccccccCCHHHHHHHH
Confidence 999999999999999999999999999999999999998876542100 00 0012247888888888
Q ss_pred HHhhhhcccc
Q 008626 157 MLHLKLENGE 166 (559)
Q Consensus 157 li~~~~~~~e 166 (559)
++..+..+.+
T Consensus 160 ~l~~g~s~~e 169 (210)
T PRK09935 160 YLVSGLSNKE 169 (210)
T ss_pred HHHcCCCHHH
Confidence 8766644443
No 40
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=99.54 E-value=2.7e-13 Score=128.07 Aligned_cols=141 Identities=16% Similarity=0.329 Sum_probs=121.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcEEE
Q 008626 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTII 93 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPVIm 93 (559)
|+|||+||++.....+...|...|+.+..+.++.+++..+.. ..||+||+|+.+++ .+|+++++.++ ++|+|+
T Consensus 1 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~d~vild~~~~~-~~~~~~~~~i~~~~~~~~ii~ 77 (221)
T PRK15479 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQS--EMYALAVLDINMPG-MDGLEVLQRLRKRGQTLPVLL 77 (221)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCC-CcHHHHHHHHHhcCCCCCEEE
Confidence 479999999999999999999889999999999999998887 67999999999999 99999998885 689999
Q ss_pred EecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHhcCCCCc------------------cCCCcHHHHHHH
Q 008626 94 TSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGGSAL------------------SDSLKPVKESVV 155 (559)
Q Consensus 94 LSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~~~~~~~~------------------s~~Lt~re~eVl 155 (559)
++...+.....+++..||++|+.||++.++|...++.++++......... .-.|+++|.+++
T Consensus 78 lt~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~E~~il 157 (221)
T PRK15479 78 LTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRSAGQVQEVQQLGELIFHDEGYFLLQGQPLALTPREQALL 157 (221)
T ss_pred EECCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhhhccCcCccEEECCEEEccCCeEEECCEEEecCHHHHHHH
Confidence 99999999999999999999999999999999999988875432111100 024889999999
Q ss_pred HHHhhh
Q 008626 156 SMLHLK 161 (559)
Q Consensus 156 ~li~~~ 161 (559)
.++...
T Consensus 158 ~~l~~~ 163 (221)
T PRK15479 158 TVLMYR 163 (221)
T ss_pred HHHHhC
Confidence 887653
No 41
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=99.54 E-value=4.4e-13 Score=128.71 Aligned_cols=140 Identities=13% Similarity=0.217 Sum_probs=120.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC---CCcEEEE
Q 008626 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTIIT 94 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir---diPVImL 94 (559)
.+||||||+...+..+...|...||.|..+.++.+++..+.. ..||+||+|+.|++ ++|+++++.++ .+|+|++
T Consensus 11 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~-~~g~~~~~~l~~~~~~pii~l 87 (240)
T PRK10710 11 PRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVRQ--TPPDLILLDLMLPG-TDGLTLCREIRRFSDIPIVMV 87 (240)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCCEEEE
Confidence 489999999999999999999999999999999999999987 77999999999999 99999998886 6999999
Q ss_pred ecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHhcCCC---------------------CccCCCcHHHHH
Q 008626 95 SNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGGS---------------------ALSDSLKPVKES 153 (559)
Q Consensus 95 Sa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~~~~~~---------------------~~s~~Lt~re~e 153 (559)
+...+......++..||++|+.||++.++|..+++.++++....... .....|+++|.+
T Consensus 88 ~~~~~~~~~~~~~~~ga~~~l~kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~e~~ 167 (240)
T PRK10710 88 TAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQRELQQQDAESPLIIDESRFQASWRGKMLDLTPAEFR 167 (240)
T ss_pred EcCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHhhccccCCCccceEeCCEEEEcCceEEEECCEEeecCHHHHH
Confidence 99999888999999999999999999999999998888753221110 001248888888
Q ss_pred HHHHHhh
Q 008626 154 VVSMLHL 160 (559)
Q Consensus 154 Vl~li~~ 160 (559)
++.++..
T Consensus 168 il~~l~~ 174 (240)
T PRK10710 168 LLKTLSH 174 (240)
T ss_pred HHHHHHh
Confidence 8888765
No 42
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=99.53 E-value=7e-14 Score=137.52 Aligned_cols=145 Identities=12% Similarity=0.134 Sum_probs=116.1
Q ss_pred HHHHHHHHHhh---CCCEEEEECCHHHHHHHhhcCCCCeeEEE---EecCCCCCCCHHHHHHHcC----CCcEEEEecCC
Q 008626 29 AAAELKFKLEA---MDYIVSTFYNENEALSAFSDKPENFHVAI---VEVTTSNTDGSFKFLETAK----DLPTIITSNIH 98 (559)
Q Consensus 29 ~~~~L~~~L~~---~gy~V~ta~~~~eAL~~Lre~~~~pDLVI---vDv~MPd~mdG~eLLe~Ir----diPVImLSa~~ 98 (559)
.+..|..+|.. .+|.|.++.+++++++.+.. ..||+|| +|+.||+ ++|+++++.++ +++||++|+.+
T Consensus 2 ~r~gi~~lL~~~~~~~~~v~~~~~~~~~l~~~~~--~~pd~vl~dl~d~~mp~-~~Gl~~~~~l~~~~p~~~iIvlt~~~ 78 (207)
T PRK11475 2 SSIGIESLFRKFPGNPYKLHTFSSQSSFQDAMSR--ISFSAVIFSLSAMRSER-REGLSCLTELAIKFPRMRRLVIADDD 78 (207)
T ss_pred chHHHHHHHhcCCCCeeEEEEeCCHHHHHHHhcc--CCCCEEEeeccccCCCC-CCHHHHHHHHHHHCCCCCEEEEeCCC
Confidence 35678888865 36667799999999999887 6799998 6888999 99999999985 79999999988
Q ss_pred CHHHHHHHH-HcCCCEEEeCCCCHHHHHHHHHHHHHHHHhcCC-------CCccCCCcHHHHHHHHHHhhhhcccc--cc
Q 008626 99 CLSTMMKCI-ALGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGG-------SALSDSLKPVKESVVSMLHLKLENGE--SK 168 (559)
Q Consensus 99 d~e~v~kAi-~~GA~DYLvKPis~eeL~~iIq~vlrr~~~~~~-------~~~s~~Lt~re~eVl~li~~~~~~~e--~E 168 (559)
+...+..++ +.||++||.|+.+.++|..+|+.++++...... ......||++|++|+.++..+..+++ .+
T Consensus 79 ~~~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v~~G~~~~~~~~~~~~~~~~~~~LT~RE~eVL~ll~~G~snkeIA~~ 158 (207)
T PRK11475 79 IEARLIGSLSPSPLDGVLSKASTLEILQQELFLSLNGVRQATDRLNNQWYINQSRMLSPTEREILRFMSRGYSMPQIAEQ 158 (207)
T ss_pred CHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHCCCcccCHHHHHHhhccCcCCCCHHHHHHHHHHHCCCCHHHHHHH
Confidence 777666665 799999999999999999999998865321110 01134699999999999999988887 45
Q ss_pred cccccccc
Q 008626 169 NEKSENTE 176 (559)
Q Consensus 169 ~EIs~~~e 176 (559)
..||+.|-
T Consensus 159 L~iS~~TV 166 (207)
T PRK11475 159 LERNIKTI 166 (207)
T ss_pred HCCCHHHH
Confidence 55555443
No 43
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=99.52 E-value=1.6e-13 Score=134.36 Aligned_cols=155 Identities=11% Similarity=0.032 Sum_probs=122.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCC--CEE-EEECCHHHHHHHhhcCCCCeeEEEEecC--CCCCCCHHHHHHHcC----C
Q 008626 18 LRVLLLDQDSSAAAELKFKLEAMD--YIV-STFYNENEALSAFSDKPENFHVAIVEVT--TSNTDGSFKFLETAK----D 88 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~g--y~V-~ta~~~~eAL~~Lre~~~~pDLVIvDv~--MPd~mdG~eLLe~Ir----d 88 (559)
+.||||||++.++..++.+|+..+ +.+ ..+.++.++++.+.. ..|||||+|+. |+. .+|+++++.++ +
T Consensus 1 ~~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~~--~~pDlvLlDl~~~l~~-~~g~~~i~~i~~~~p~ 77 (207)
T PRK15411 1 MSTIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACDS--LRPSVVFINEDCFIHD-ASNSQRIKQIINQHPN 77 (207)
T ss_pred CCEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHhc--cCCCEEEEeCcccCCC-CChHHHHHHHHHHCCC
Confidence 468999999999999999998654 344 489999999999887 67999999966 888 78999999885 6
Q ss_pred CcEEEEecCCCHHHHHHHHHcCCCE-EEeCCCCHHHHHHHHHHHHHHHHhcCCCC--ccCCCcHHHHHHHHHHhhhhccc
Q 008626 89 LPTIITSNIHCLSTMMKCIALGAVE-FLRKPLSEDKLRNLWQHVVHKAFNAGGSA--LSDSLKPVKESVVSMLHLKLENG 165 (559)
Q Consensus 89 iPVImLSa~~d~e~v~kAi~~GA~D-YLvKPis~eeL~~iIq~vlrr~~~~~~~~--~s~~Lt~re~eVl~li~~~~~~~ 165 (559)
++||++|+..+..... ++..|+.. |+.|+.+.++|..+|+.+..+........ ....|+++|.+|++++..+..++
T Consensus 78 ~~iivlt~~~~~~~~~-~~~~~~~~~~~~K~~~~~~L~~aI~~v~~g~~~~~~~~~~~~~~LT~RE~eVL~lla~G~snk 156 (207)
T PRK15411 78 TLFIVFMAIANIHFDE-YLLVRKNLLISSKSIKPESLDDLLGDILKKETTITSFLNLPTLSLSRTESSMLRMWMAGQGTI 156 (207)
T ss_pred CeEEEEECCCchhHHH-HHHHHhhceeeeccCCHHHHHHHHHHHHcCCcccCccccCCcccCCHHHHHHHHHHHcCCCHH
Confidence 8999999988776653 56566554 89999999999999999886643221111 11249999999999999999888
Q ss_pred c--cccccccccc
Q 008626 166 E--SKNEKSENTE 176 (559)
Q Consensus 166 e--~E~EIs~~~e 176 (559)
+ .+..||..|-
T Consensus 157 eIA~~L~iS~~TV 169 (207)
T PRK15411 157 QISDQMNIKAKTV 169 (207)
T ss_pred HHHHHcCCCHHHH
Confidence 7 4555554443
No 44
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=99.51 E-value=2.1e-13 Score=159.81 Aligned_cols=117 Identities=18% Similarity=0.325 Sum_probs=110.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcE
Q 008626 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPT 91 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPV 91 (559)
..++||||||++..+..+..+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ .+||
T Consensus 800 ~~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~--~~~DlVl~D~~mP~-mdG~el~~~ir~~~~~~pI 876 (924)
T PRK10841 800 DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSK--NHIDIVLTDVNMPN-MDGYRLTQRLRQLGLTLPV 876 (924)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh--CCCCEEEEcCCCCC-CCHHHHHHHHHhcCCCCCE
Confidence 45799999999999999999999999999999999999999988 78999999999999 99999999986 6999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008626 92 IITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (559)
Q Consensus 92 ImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~ 135 (559)
|++|+....+...++++.|+++||.||++.++|...+.+..++.
T Consensus 877 I~lTa~~~~~~~~~~~~aG~d~~L~KPv~~~~L~~~L~~~~~~~ 920 (924)
T PRK10841 877 IGVTANALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVYAERV 920 (924)
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998876544
No 45
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=99.50 E-value=2.2e-13 Score=156.71 Aligned_cols=115 Identities=15% Similarity=0.212 Sum_probs=107.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC------CC
Q 008626 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DL 89 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir------di 89 (559)
..++||||||++..+..+..+|+..||.|..+.++.+|++.+.+ ..||+||+|+.||+ ++|+++++.++ ++
T Consensus 666 ~~~~vLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~~~~--~~~dlil~D~~mp~-~~g~~~~~~lr~~~~~~~~ 742 (919)
T PRK11107 666 LPLTVMAVDDNPANLKLIGALLEEQVEHVVLCDSGHQAVEQAKQ--RPFDLILMDIQMPG-MDGIRACELIRQLPHNQNT 742 (919)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCC-CcHHHHHHHHHhcccCCCC
Confidence 35799999999999999999999999999999999999999988 78999999999999 99999999886 58
Q ss_pred cEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008626 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 90 PVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
|||++|+..+.+...++++.|+++||.||++.++|..++.+++.
T Consensus 743 pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 786 (919)
T PRK11107 743 PIIAVTAHAMAGERERLLSAGMDDYLAKPIDEAMLKQVLLRYKP 786 (919)
T ss_pred CEEEEeCCCCHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999998877654
No 46
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=99.50 E-value=2.9e-13 Score=156.07 Aligned_cols=116 Identities=16% Similarity=0.248 Sum_probs=108.1
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-------
Q 008626 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------- 87 (559)
Q Consensus 15 p~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir------- 87 (559)
+..++||||||++..+..+..+|...||+|.++.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++
T Consensus 688 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~--~~~dlil~D~~mp~-~~G~~~~~~ir~~~~~~~ 764 (921)
T PRK15347 688 PWQLQILLVDDVETNRDIIGMMLVELGQQVTTAASGTEALELGRQ--HRFDLVLMDIRMPG-LDGLETTQLWRDDPNNLD 764 (921)
T ss_pred cccCCEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCC-CCHHHHHHHHHhchhhcC
Confidence 345799999999999999999999999999999999999999988 78999999999999 99999999875
Q ss_pred -CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008626 88 -DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 88 -diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
.+|||++|+..+.....++++.|+++||.||++.++|..++..+++
T Consensus 765 ~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 811 (921)
T PRK15347 765 PDCMIVALTANAAPEEIHRCKKAGMNHYLTKPVTLAQLARALELAAE 811 (921)
T ss_pred CCCcEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 4899999999999999999999999999999999999998887654
No 47
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=99.49 E-value=4.8e-13 Score=123.10 Aligned_cols=117 Identities=22% Similarity=0.388 Sum_probs=107.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcE
Q 008626 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPT 91 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPV 91 (559)
...+||||||++..+..+...|...+|.+..+.++.+++..+.. ..+|+||+|+.+++ ++|+++++.++ .+|+
T Consensus 2 ~~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~d~ii~d~~~~~-~~~~~~~~~l~~~~~~~~i 78 (202)
T PRK09390 2 DKGVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPG--LRFGCVVTDVRMPG-IDGIELLRRLKARGSPLPV 78 (202)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhcc--CCCCEEEEeCCCCC-CcHHHHHHHHHhcCCCCCE
Confidence 35789999999999999999999899999999999999999887 77999999999999 99999998885 6899
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008626 92 IITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (559)
Q Consensus 92 ImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~ 135 (559)
|+++...+......++..|+.+|+.||++.++|...++.++...
T Consensus 79 i~l~~~~~~~~~~~~~~~g~~~~l~~p~~~~~l~~~l~~~~~~~ 122 (202)
T PRK09390 79 IVMTGHGDVPLAVEAMKLGAVDFIEKPFEDERLIGAIERALAQA 122 (202)
T ss_pred EEEECCCCHHHHHHHHHcChHHHhhCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999998877653
No 48
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.49 E-value=1.4e-13 Score=158.73 Aligned_cols=117 Identities=19% Similarity=0.345 Sum_probs=109.7
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-----C
Q 008626 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-----D 88 (559)
Q Consensus 14 ~p~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-----d 88 (559)
+-.+.+||||||+...++....+|++.|.+|+++.++.+|++.+.. .+.||+|++|++||. |||++..+.|| .
T Consensus 663 ~l~g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~sg~e~l~~~~~-~~~y~~ifmD~qMP~-mDG~e~~~~irk~~~~~ 740 (786)
T KOG0519|consen 663 LLTGPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLKP-PHSYDVIFMDLQMPE-MDGYEATREIRKKERWH 740 (786)
T ss_pred cccCCceEEEecccchHHHHHHHHHHhCCeeEeecCcHHHHHhcCC-CCcccEEEEEcCCcc-cchHHHHHHHHHhhcCC
Confidence 4568999999999999999999999999999999999999999983 278999999999999 99999999997 6
Q ss_pred CcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 008626 89 LPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVV 132 (559)
Q Consensus 89 iPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vl 132 (559)
+|||++|++.+.+...+|++.|.++||.|||..+.|..+++..+
T Consensus 741 ~pIvAlTa~~~~~~~~~c~~~Gmd~yl~KP~~~~~l~~~l~~~~ 784 (786)
T KOG0519|consen 741 LPIVALTADADPSTEEECLEVGMDGYLSKPFTLEKLVKILREFL 784 (786)
T ss_pred CCEEEEecCCcHHHHHHHHHhCCceEEcccccHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999887765
No 49
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=99.49 E-value=1.3e-12 Score=120.73 Aligned_cols=148 Identities=14% Similarity=0.183 Sum_probs=122.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CC
Q 008626 16 KGLRVLLLDQDSSAAAELKFKLEAM-DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DL 89 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~-gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----di 89 (559)
+.++||||||+...+..+...|... ++.++ .+.++.+++..+.. ..||+||+|+.+++ ++|+++++.++ .+
T Consensus 2 ~~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~-~~~~~~~~~l~~~~~~~ 78 (211)
T PRK15369 2 KNYKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNACRQ--LEPDIVILDLGLPG-MNGLDVIPQLHQRWPAM 78 (211)
T ss_pred CccEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHHh--cCCCEEEEeCCCCC-CCHHHHHHHHHHHCCCC
Confidence 4589999999999999999999875 57755 88999999998887 77999999999999 99999988875 68
Q ss_pred cEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHh------------c--CCCCccCCCcHHHHHHH
Q 008626 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFN------------A--GGSALSDSLKPVKESVV 155 (559)
Q Consensus 90 PVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~~------------~--~~~~~s~~Lt~re~eVl 155 (559)
|+|++|+..+......++..|+.+|+.||++.++|...++.++++... . ........|++++.+++
T Consensus 79 ~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~e~~vl 158 (211)
T PRK15369 79 NILVLTARQEEHMASRTLAAGALGYVLKKSPQQILLAAIQTVAVGKRYIDPALNREAILALLNADDTNPPLLTPRERQIL 158 (211)
T ss_pred cEEEEeCCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCCceeCHHHHHHHHHHhccCCCCcccCCCHHHHHHH
Confidence 999999999999999999999999999999999999999877653110 0 01111345899999999
Q ss_pred HHHhhhhcccc
Q 008626 156 SMLHLKLENGE 166 (559)
Q Consensus 156 ~li~~~~~~~e 166 (559)
.++..+..+.+
T Consensus 159 ~l~~~g~~~~~ 169 (211)
T PRK15369 159 KLITEGYTNRD 169 (211)
T ss_pred HHHHCCCCHHH
Confidence 99876655443
No 50
>PRK10651 transcriptional regulator NarL; Provisional
Probab=99.49 E-value=1.3e-12 Score=122.35 Aligned_cols=147 Identities=14% Similarity=0.189 Sum_probs=122.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCc
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAM-DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLP 90 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~-gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diP 90 (559)
..+||||||++..+..+...|... ++.++ .+.++.+++..+.. ..||+||+|+.+++ ++|+++++.++ ..|
T Consensus 6 ~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvl~d~~l~~-~~~~~~~~~l~~~~~~~~ 82 (216)
T PRK10651 6 PATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAES--LDPDLILLDLNMPG-MNGLETLDKLREKSLSGR 82 (216)
T ss_pred ceEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHHh--CCCCEEEEeCCCCC-CcHHHHHHHHHHhCCCCc
Confidence 479999999999999999999764 67655 78999999999988 77999999999999 99999998885 689
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH--------------hcC---CCCccCCCcHHHHH
Q 008626 91 TIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF--------------NAG---GSALSDSLKPVKES 153 (559)
Q Consensus 91 VImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~--------------~~~---~~~~s~~Lt~re~e 153 (559)
+|+++...+......++..|+.+|+.||++.++|...++.++++.. ... .......|+++|.+
T Consensus 83 vi~l~~~~~~~~~~~~~~~g~~~~i~k~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~~ 162 (216)
T PRK10651 83 IVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAGEMVLSEALTPVLAASLRANRATTERDVNQLTPRERD 162 (216)
T ss_pred EEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCcccCHHHHHHHHHHhhcccCccccccccCCHHHHH
Confidence 9999999999999999999999999999999999999998875321 000 00112349999999
Q ss_pred HHHHHhhhhcccc
Q 008626 154 VVSMLHLKLENGE 166 (559)
Q Consensus 154 Vl~li~~~~~~~e 166 (559)
++.++..+..+.+
T Consensus 163 vl~~l~~g~~~~~ 175 (216)
T PRK10651 163 ILKLIAQGLPNKM 175 (216)
T ss_pred HHHHHHcCCCHHH
Confidence 9999887655544
No 51
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=99.48 E-value=6.8e-13 Score=131.96 Aligned_cols=115 Identities=20% Similarity=0.240 Sum_probs=104.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC------C
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAM-DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------D 88 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~-gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir------d 88 (559)
.++||||||+...+..+..+|... ++.++ .+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ .
T Consensus 2 ~~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~~--~~~DlvllD~~mp~-~dG~~~l~~i~~~~~~~~ 78 (262)
T TIGR02875 2 KIRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIKE--QQPDVVVLDIIMPH-LDGIGVLEKLNEIELSAR 78 (262)
T ss_pred CcEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCC-CCHHHHHHHHHhhccccC
Confidence 479999999999999999999864 66655 79999999999988 78999999999999 99999999886 2
Q ss_pred CcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008626 89 LPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 89 iPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
+|||++|+..+.....++++.|+++||.||++.++|...+++++.+
T Consensus 79 ~~iI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~~~~ 124 (262)
T TIGR02875 79 PRVIMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAWG 124 (262)
T ss_pred CeEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 8999999999999999999999999999999999999998877643
No 52
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.48 E-value=5.5e-13 Score=143.12 Aligned_cols=117 Identities=19% Similarity=0.316 Sum_probs=108.8
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CC
Q 008626 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DL 89 (559)
Q Consensus 14 ~p~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----di 89 (559)
|....+||||||+...+..+...|+..||.|.++.++.+|+..+.. ..||+||+|+.||+ ++|+++++.++ .+
T Consensus 1 ~~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--~~~dlillD~~~p~-~~g~~ll~~i~~~~~~~ 77 (457)
T PRK11361 1 MTAINRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFAD--IHPDVVLMDIRMPE-MDGIKALKEMRSHETRT 77 (457)
T ss_pred CCCCCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCC
Confidence 4456799999999999999999999999999999999999999988 77999999999999 99999999885 69
Q ss_pred cEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008626 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 90 PVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
|||++|+..+.+....+++.||.|||.||++.++|...++.++.
T Consensus 78 pvI~lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~ 121 (457)
T PRK11361 78 PVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQ 121 (457)
T ss_pred CEEEEeCCCCHHHHHHHHHCCccEEEecccCHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999887664
No 53
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.48 E-value=7.5e-13 Score=143.08 Aligned_cols=115 Identities=25% Similarity=0.329 Sum_probs=108.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcEE
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTI 92 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPVI 92 (559)
..+||||||++..+..|..+|+..||.|.++.++.+|+..+.. ..||+||+|+.||+ ++|+++++.++ .+|||
T Consensus 3 ~~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~~--~~~DlvllD~~lp~-~dgl~~l~~ir~~~~~~pvI 79 (469)
T PRK10923 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALAS--KTPDVLLSDIRMPG-MDGLALLKQIKQRHPMLPVI 79 (469)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEECCCCCC-CCHHHHHHHHHhhCCCCeEE
Confidence 4689999999999999999999999999999999999999988 78999999999999 99999999985 58999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008626 93 ITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 93 mLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
++|+..+.+....+++.||.+||.||++.++|...+.+++..
T Consensus 80 vlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 121 (469)
T PRK10923 80 IMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 (469)
T ss_pred EEECCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999888764
No 54
>PRK15115 response regulator GlrR; Provisional
Probab=99.48 E-value=6.3e-13 Score=142.52 Aligned_cols=116 Identities=21% Similarity=0.355 Sum_probs=108.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcEE
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTI 92 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPVI 92 (559)
..+||||||++..+..+...|+..||.|..+.++.+|+..+.. ..||+||+|+.||+ ++|+++++.++ ++|||
T Consensus 5 ~~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~~--~~~dlvilD~~lp~-~~g~~ll~~l~~~~~~~pvI 81 (444)
T PRK15115 5 PAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLNR--EKVDLVISDLRMDE-MDGMQLFAEIQKVQPGMPVI 81 (444)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc--CCCCEEEEcCCCCC-CCHHHHHHHHHhcCCCCcEE
Confidence 3799999999999999999999999999999999999999988 78999999999999 99999998885 69999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008626 93 ITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (559)
Q Consensus 93 mLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~ 135 (559)
++|+..+.....+++..||.+||.||++.++|...++.+++..
T Consensus 82 vlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~~~~~~~ 124 (444)
T PRK15115 82 ILTAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDALEQS 124 (444)
T ss_pred EEECCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999887653
No 55
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=99.47 E-value=1.1e-12 Score=127.68 Aligned_cols=113 Identities=16% Similarity=0.240 Sum_probs=98.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCC-CEE-EEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC---CCcE
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAMD-YIV-STFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPT 91 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~g-y~V-~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir---diPV 91 (559)
|++||||||++..+..|..+|+..+ +.+ ..+.++.+++..+.. ..||+||+|+.||+ ++|+++++.++ ..+|
T Consensus 1 m~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~--~~~dlv~lDi~~~~-~~G~~~~~~l~~~~~~~i 77 (238)
T PRK11697 1 MIKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIHR--LKPDVVFLDIQMPR-ISGLELVGMLDPEHMPYI 77 (238)
T ss_pred CcEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCC-CCHHHHHHHhcccCCCEE
Confidence 4799999999999999999999877 444 478999999999987 67999999999999 99999999886 2457
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008626 92 IITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 92 ImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
|++|+.. +...++++.||.+||.||++.++|...+.++.+.
T Consensus 78 i~vt~~~--~~~~~a~~~~~~~yl~KP~~~~~l~~~l~~~~~~ 118 (238)
T PRK11697 78 VFVTAFD--EYAIKAFEEHAFDYLLKPIDPARLAKTLARLRQE 118 (238)
T ss_pred EEEeccH--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHh
Confidence 7888765 4677999999999999999999999998887654
No 56
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=99.47 E-value=4e-13 Score=132.93 Aligned_cols=143 Identities=15% Similarity=0.188 Sum_probs=112.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEE-EEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHH-HHcC----CC
Q 008626 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIV-STFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFL-ETAK----DL 89 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy~V-~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLL-e~Ir----di 89 (559)
.+.+|++|||++.....|+.+|.. ++.| ..+.++.+|+..+. .|||||+|+.||+ ++|++++ +.++ ++
T Consensus 9 ~~~~~~~v~~~~l~~~~l~~~L~~-~~~v~~~~~~~~~~~~~~~----~~DvvllDi~~p~-~~G~~~~~~~i~~~~p~~ 82 (216)
T PRK10100 9 HGHTLLLITKPSLQATALLQHLKQ-SLAITGKLHNIQRSLDDIS----SGSIILLDMMEAD-KKLIHYWQDTLSRKNNNI 82 (216)
T ss_pred cCceEEEEeChHhhhHHHHHHHHH-hCCCeEEEcCHHHhhccCC----CCCEEEEECCCCC-ccHHHHHHHHHHHhCCCC
Confidence 346799999999999999999984 4554 47789999988753 3899999999999 9999986 4453 68
Q ss_pred cEEEEecCCCHHHHHHHHH--cCCCEEEeCCCCHHHHHHHHHHHHHHHH-----------hcC-----CCCccCCCcHHH
Q 008626 90 PTIITSNIHCLSTMMKCIA--LGAVEFLRKPLSEDKLRNLWQHVVHKAF-----------NAG-----GSALSDSLKPVK 151 (559)
Q Consensus 90 PVImLSa~~d~e~v~kAi~--~GA~DYLvKPis~eeL~~iIq~vlrr~~-----------~~~-----~~~~s~~Lt~re 151 (559)
+||++|...+ ....++. .||.+||.|..+.++|..+|+.+.++.. ... .......|+++|
T Consensus 83 ~vvvlt~~~~--~~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lt~rE 160 (216)
T PRK10100 83 KILLLNTPED--YPYREIENWPHINGVFYAMEDQERVVNGLQGVLRGECYFTQKLASYLITHSGNYRYNSTESALLTHRE 160 (216)
T ss_pred cEEEEECCch--hHHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHcCCcccCHHHHHHHHHhhcccccCCCccCCCCHHH
Confidence 9999999877 3445555 4999999999999999999988765421 110 011134599999
Q ss_pred HHHHHHHhhhhcccc
Q 008626 152 ESVVSMLHLKLENGE 166 (559)
Q Consensus 152 ~eVl~li~~~~~~~e 166 (559)
.+++.++..+..+.+
T Consensus 161 ~~Vl~l~~~G~s~~e 175 (216)
T PRK10100 161 KEILNKLRIGASNNE 175 (216)
T ss_pred HHHHHHHHcCCCHHH
Confidence 999999998887666
No 57
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.46 E-value=6.2e-13 Score=141.92 Aligned_cols=116 Identities=22% Similarity=0.388 Sum_probs=108.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcEE
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTI 92 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPVI 92 (559)
+++||||||+...+..+..+|...||.|.++.++.+|+..+.. ..||+||+|+.||+ ++|+++++.++ ++|||
T Consensus 5 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--~~~DlvilD~~m~~-~~G~~~~~~ir~~~~~~~vi 81 (441)
T PRK10365 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVRE--QVFDLVLCDVRMAE-MDGIATLKEIKALNPAIPVL 81 (441)
T ss_pred cceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCC-CCHHHHHHHHHhhCCCCeEE
Confidence 5899999999999999999999999999999999999999988 77999999999999 99999999885 68999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008626 93 ITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (559)
Q Consensus 93 mLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~ 135 (559)
++|++.+.+.+.++++.||.+||.||++.++|...++.++.+.
T Consensus 82 ~lt~~~~~~~~~~a~~~ga~~~l~Kp~~~~~L~~~l~~~l~~~ 124 (441)
T PRK10365 82 IMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 (441)
T ss_pred EEECCCCHHHHHHHHHhhhHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998887653
No 58
>PRK14084 two-component response regulator; Provisional
Probab=99.46 E-value=1.2e-12 Score=128.46 Aligned_cols=112 Identities=15% Similarity=0.342 Sum_probs=99.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCC-C-EEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcE
Q 008626 18 LRVLLLDQDSSAAAELKFKLEAMD-Y-IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPT 91 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~g-y-~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPV 91 (559)
++||||||++..+..+..+|...+ + .+..+.++.+|+..+.+ ..||+||+|+.||+ ++|+++++.++ ..+|
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~~--~~~dlv~lDi~m~~-~~G~~~~~~i~~~~~~~~i 77 (246)
T PRK14084 1 MKALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLI--NQYDIIFLDINLMD-ESGIELAAKIQKMKEPPAI 77 (246)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHHh--cCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCCEE
Confidence 589999999999999999998765 5 46689999999999988 67999999999999 99999999986 4678
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008626 92 IITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 92 ImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
|++|+..+ ...++++.||.+||.||++.++|..+++++.++
T Consensus 78 I~~t~~~~--~~~~~~~~~~~~yl~KP~~~~~l~~~l~~~~~~ 118 (246)
T PRK14084 78 IFATAHDQ--FAVKAFELNATDYILKPFEQKRIEQAVNKVRAT 118 (246)
T ss_pred EEEecChH--HHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHh
Confidence 88887654 567899999999999999999999999887654
No 59
>PRK10403 transcriptional regulator NarP; Provisional
Probab=99.46 E-value=2.6e-12 Score=119.94 Aligned_cols=147 Identities=16% Similarity=0.142 Sum_probs=121.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhh-CCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCc
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEA-MDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLP 90 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~-~gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diP 90 (559)
.++|||||++...+..+...|.. .+|.++ .+.++.+++..+.. ..||+||+|+.+++ ++|+++++.++ ..|
T Consensus 6 ~~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~-~~~~~~~~~l~~~~~~~~ 82 (215)
T PRK10403 6 PFQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANR--LDPDVILLDLNMKG-MSGLDTLNALRRDGVTAQ 82 (215)
T ss_pred eEEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHh--cCCCEEEEecCCCC-CcHHHHHHHHHHhCCCCe
Confidence 36899999999999999999975 478876 79999999998887 78999999999999 99999998885 589
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH----------Hh---c--CCCCccCCCcHHHHHHH
Q 008626 91 TIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA----------FN---A--GGSALSDSLKPVKESVV 155 (559)
Q Consensus 91 VImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~----------~~---~--~~~~~s~~Lt~re~eVl 155 (559)
+|+++...+......+++.||++|+.||++.++|..+++.++++. .. . ........|++++.+++
T Consensus 83 ii~l~~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~e~~vl 162 (215)
T PRK10403 83 IIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLREREMFGAEEDPFSVLTERELDVL 162 (215)
T ss_pred EEEEeCCCChHHHHHHHHcCCCeEEecCCCHHHHHHHHHHHhCCCeecCHHHHHHHHhhhccCCCCcccccCCHHHHHHH
Confidence 999999988889999999999999999999999999998754321 00 0 01111246899999999
Q ss_pred HHHhhhhcccc
Q 008626 156 SMLHLKLENGE 166 (559)
Q Consensus 156 ~li~~~~~~~e 166 (559)
.++..+....+
T Consensus 163 ~~~~~g~s~~~ 173 (215)
T PRK10403 163 HELAQGLSNKQ 173 (215)
T ss_pred HHHHCCCCHHH
Confidence 99887765544
No 60
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=99.46 E-value=1.7e-13 Score=139.85 Aligned_cols=112 Identities=17% Similarity=0.265 Sum_probs=101.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcEEE
Q 008626 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTII 93 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPVIm 93 (559)
++|+|||||..+...|..+|++.|..+.+|+...+|+..|.. ..||||++|+.||+ |+|++|+++++ .+|||+
T Consensus 1 ~~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~--~kpDLifldI~mp~-~ngiefaeQvr~i~~~v~iif 77 (361)
T COG3947 1 PRIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEV--FKPDLIFLDIVMPY-MNGIEFAEQVRDIESAVPIIF 77 (361)
T ss_pred CcEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHHh--cCCCEEEEEeecCC-ccHHHHHHHHHHhhccCcEEE
Confidence 489999999999999999999999778899999999999999 88999999999999 99999999997 699999
Q ss_pred EecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008626 94 TSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 94 LSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
+|++.+. ...++..-+.|||.||+..+.|-.+|.+..++
T Consensus 78 Issh~ey--a~dsf~~n~~dYl~KPvt~ekLnraIdr~~k~ 116 (361)
T COG3947 78 ISSHAEY--ADDSFGMNLDDYLPKPVTPEKLNRAIDRRLKR 116 (361)
T ss_pred Eecchhh--hhhhcccchHhhccCCCCHHHHHHHHHHHhcc
Confidence 9998764 45566667799999999999999999887754
No 61
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.45 E-value=5.4e-13 Score=140.05 Aligned_cols=114 Identities=20% Similarity=0.367 Sum_probs=104.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC------CCc
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DLP 90 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir------diP 90 (559)
+.+||||||++..+..|..+|.. .+.+..+.++.+|+..+.+ ..||+||+|+.||+ ++|+++++.++ ++|
T Consensus 155 ~~~vlivdd~~~~~~~l~~~l~~-~~~~~~~~~~~~a~~~~~~--~~~d~vi~d~~~p~-~~g~~l~~~i~~~~~~~~~~ 230 (457)
T PRK09581 155 DGRILLVDDDVSQAERIANILKE-EFRVVVVSDPSEALFNAAE--TNYDLVIVSANFEN-YDPLRLCSQLRSKERTRYVP 230 (457)
T ss_pred CceEEEEecccchHHHHHHHHhh-cceeeeecChHHHHHhccc--CCCCEEEecCCCCC-chHhHHHHHHHhccccCCCc
Confidence 56899999999999999999965 4777889999999999888 78999999999999 99999999985 599
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008626 91 TIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 91 VImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
||++|++.+.+.+.+|+..||+|||.||++.++|...+....++
T Consensus 231 ii~ls~~~~~~~~~~a~~~Ga~d~l~kp~~~~~l~~~i~~~~~~ 274 (457)
T PRK09581 231 ILLLVDEDDDPRLVKALELGVNDYLMRPIDKNELLARVRTQIRR 274 (457)
T ss_pred EEEEeCCCChHHHHHHHHccchhhhhCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988776654
No 62
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=99.45 E-value=9.2e-13 Score=152.35 Aligned_cols=118 Identities=19% Similarity=0.205 Sum_probs=108.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcE
Q 008626 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPT 91 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPV 91 (559)
.+++||||||++..+..+..+|...||.|+.+.++.+|+..+... ..||+||+|+.||+ ++|+++++.++ ++||
T Consensus 680 ~~~~vLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~-~~~Dlvl~D~~mp~-~~G~~~~~~lr~~~~~~~i 757 (914)
T PRK11466 680 DGLRLLLIEDNPLTQRITAEMLNTSGAQVVAVGNAAQALETLQNS-EPFAAALVDFDLPD-YDGITLARQLAQQYPSLVL 757 (914)
T ss_pred CCcceEEEeCCHHHHHHHHHHHHhcCCceEEeCCHHHHHHHHHcC-CCCCEEEEeCCCCC-CCHHHHHHHHHhhCCCCCE
Confidence 357999999999999999999999999999999999999988652 46899999999999 99999999886 6999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008626 92 IITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (559)
Q Consensus 92 ImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~ 135 (559)
|++|+........+++..|+++||.||++.++|..++.++++..
T Consensus 758 i~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 801 (914)
T PRK11466 758 IGFSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQLQ 801 (914)
T ss_pred EEEeCCCchhhHHHHHhcCcCCEEeCCCCHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999888653
No 63
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=99.44 E-value=1.2e-12 Score=152.09 Aligned_cols=114 Identities=19% Similarity=0.280 Sum_probs=107.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----C---C
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----D---L 89 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----d---i 89 (559)
+.+||||||++..+..+..+|+..||.|.++.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ . +
T Consensus 702 ~~~iLvvdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvl~D~~mp~-~~g~~~~~~ir~~~~~~~~~ 778 (968)
T TIGR02956 702 PQRVLLVEDNEVNQMVAQGFLTRLGHKVTLAESGQSALECFHQ--HAFDLALLDINLPD-GDGVTLLQQLRAIYGAKNEV 778 (968)
T ss_pred ccceEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHC--CCCCEEEECCCCCC-CCHHHHHHHHHhCccccCCC
Confidence 4689999999999999999999999999999999999999988 78999999999999 99999999986 2 8
Q ss_pred cEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008626 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 90 PVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
|||++|+....+...+++..|+++||.||++.++|..++..++.
T Consensus 779 pii~lta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 822 (968)
T TIGR02956 779 KFIAFSAHVFNEDVAQYLAAGFDGFLAKPVVEEQLTAMIAVILA 822 (968)
T ss_pred eEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999887764
No 64
>PRK13435 response regulator; Provisional
Probab=99.43 E-value=2.8e-12 Score=115.66 Aligned_cols=116 Identities=16% Similarity=0.164 Sum_probs=100.7
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCC-CCCCHHHHHHHcC---CC
Q 008626 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTS-NTDGSFKFLETAK---DL 89 (559)
Q Consensus 15 p~glrVLIVDDD~~~~~~L~~~L~~~gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MP-d~mdG~eLLe~Ir---di 89 (559)
+.+++|||+|++......+...|...||.++ .+.++.+++..+.. ..||+||+|+.++ + .+|+++++.++ .+
T Consensus 3 ~~~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~dliivd~~~~~~-~~~~~~~~~l~~~~~~ 79 (145)
T PRK13435 3 LRQLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGRR--RQPDVALVDVHLADG-PTGVEVARRLSADGGV 79 (145)
T ss_pred cccceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhhh--cCCCEEEEeeecCCC-CcHHHHHHHHHhCCCC
Confidence 3468999999999999999999998899987 78999999998877 6799999999997 5 78999998875 69
Q ss_pred cEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008626 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 136 (559)
Q Consensus 90 PVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~ 136 (559)
|+|+++...+. ..++..||.+||.||++.++|...++++..+..
T Consensus 80 pii~ls~~~~~---~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~ 123 (145)
T PRK13435 80 EVVFMTGNPER---VPHDFAGALGVIAKPYSPRGVARALSYLSARRV 123 (145)
T ss_pred CEEEEeCCHHH---HHHHhcCcceeEeCCCCHHHHHHHHHHHHhcCc
Confidence 99999986542 467889999999999999999999988875443
No 65
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=99.42 E-value=1.7e-12 Score=154.55 Aligned_cols=117 Identities=22% Similarity=0.291 Sum_probs=109.2
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CC
Q 008626 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DL 89 (559)
Q Consensus 14 ~p~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----di 89 (559)
++..++||||||++..+..+..+|+..||+|..+.++.+|+..+.. ..|||||+|+.||+ ++|+++++.++ .+
T Consensus 955 ~~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlil~D~~mp~-~~g~~~~~~i~~~~~~~ 1031 (1197)
T PRK09959 955 LPEKLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSM--QHYDLLITDVNMPN-MDGFELTRKLREQNSSL 1031 (1197)
T ss_pred cccCceEEEcCCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhc--CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCC
Confidence 4456899999999999999999999999999999999999999988 78999999999999 99999999886 68
Q ss_pred cEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008626 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 90 PVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
|||++|+..+.....++++.||++||.||++.++|...++.+..
T Consensus 1032 pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 1075 (1197)
T PRK09959 1032 PIWGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQLHQ 1075 (1197)
T ss_pred CEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999998877654
No 66
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.42 E-value=1.8e-12 Score=138.99 Aligned_cols=111 Identities=20% Similarity=0.343 Sum_probs=101.9
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCC----CCCHHHHHHHcC----CCcE
Q 008626 20 VLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSN----TDGSFKFLETAK----DLPT 91 (559)
Q Consensus 20 VLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd----~mdG~eLLe~Ir----diPV 91 (559)
|||||||+..+..+...| .||+|.++.++.+|++.+.. ..||+||+|+.||+ .++|+++++.++ ++||
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l~~--~~~dlvllD~~mp~~~~~~~~g~~~l~~i~~~~~~~pi 76 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVRR--HEPAVVTLDLGLPPDADGASEGLAALQQILAIAPDTKV 76 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCCCcCCCCCHHHHHHHHHhhCCCCCE
Confidence 689999999999999888 78999999999999999988 78999999999994 168999998885 6999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008626 92 IITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 92 ImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
|++|+..+.+...++++.||+|||.||++.++|..++++++..
T Consensus 77 I~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~~ 119 (445)
T TIGR02915 77 IVITGNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDRAFHL 119 (445)
T ss_pred EEEecCCCHHHHHHHHHCCccEEEeCCCCHHHHHHHHhhhhhh
Confidence 9999999999999999999999999999999999999877653
No 67
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=99.41 E-value=1.2e-11 Score=103.68 Aligned_cols=115 Identities=18% Similarity=0.313 Sum_probs=104.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCE-EEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC------CC
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAMDYI-VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DL 89 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~-V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir------di 89 (559)
.++|++++++......+...|...++. +..+.+..+++..+.. ..+|++|+|..+++ .+|+++++.++ .+
T Consensus 5 ~~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~di~l~d~~~~~-~~~~~~~~~l~~~~~~~~~ 81 (129)
T PRK10610 5 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA--GGFGFVISDWNMPN-MDGLELLKTIRADGAMSAL 81 (129)
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhhc--cCCCEEEEcCCCCC-CCHHHHHHHHHhCCCcCCC
Confidence 379999999999999999999988885 7789999999999887 67999999999999 99999998885 47
Q ss_pred cEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008626 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 90 PVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
|+|+++...+......++..|+.+|+.||++.++|...++.++++
T Consensus 82 ~~i~~~~~~~~~~~~~~~~~g~~~~i~~p~~~~~l~~~l~~~~~~ 126 (129)
T PRK10610 82 PVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 126 (129)
T ss_pred cEEEEECCCCHHHHHHHHHhCCCeEEECCCCHHHHHHHHHHHHHH
Confidence 899999988888899999999999999999999999999887754
No 68
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.41 E-value=2.8e-12 Score=138.13 Aligned_cols=112 Identities=27% Similarity=0.368 Sum_probs=105.4
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcEEEEe
Q 008626 20 VLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTIITS 95 (559)
Q Consensus 20 VLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPVImLS 95 (559)
||||||++..+..+...|...||.|..+.++.+|+..+.. ..||+||+|+.||+ ++|+++++.++ ++|||++|
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~DlVllD~~~p~-~~g~~ll~~l~~~~~~~~vIvlt 77 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALAR--GQPDLLITDVRMPG-EDGLDLLPQIKKRHPQLPVIVMT 77 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEEcCCCCC-CCHHHHHHHHHHhCCCCeEEEEe
Confidence 6899999999999999999999999999999999999988 78999999999999 99999999885 68999999
Q ss_pred cCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008626 96 NIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 96 a~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
+..+.....++++.||.+||.||++.++|...+++++..
T Consensus 78 ~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 116 (463)
T TIGR01818 78 AHSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERALAH 116 (463)
T ss_pred CCCCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999887754
No 69
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=99.40 E-value=2.9e-12 Score=146.33 Aligned_cols=114 Identities=17% Similarity=0.260 Sum_probs=103.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC------C-C
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------D-L 89 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir------d-i 89 (559)
+++||||||++..+..+..+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ . +
T Consensus 525 ~~~ILivdD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~--~~~Dlvl~D~~mp~-~~G~e~~~~ir~~~~~~~~~ 601 (779)
T PRK11091 525 ALNILLVEDIELNVIVARSVLEKLGNSVDVAMTGKEALEMFDP--DEYDLVLLDIQLPD-MTGLDIARELRERYPREDLP 601 (779)
T ss_pred ccceEEEcCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhc--CCCCEEEEcCCCCC-CCHHHHHHHHHhccccCCCC
Confidence 5899999999999999999999999999999999999999987 78999999999999 99999999986 2 4
Q ss_pred cEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008626 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 90 PVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
|||++|+..... ..+++..|+++||.||++.++|..++++++..
T Consensus 602 ~ii~~ta~~~~~-~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 645 (779)
T PRK11091 602 PLVALTANVLKD-KKEYLDAGMDDVLSKPLSVPALTAMIKKFWDT 645 (779)
T ss_pred cEEEEECCchHh-HHHHHHCCCCEEEECCCCHHHHHHHHHHHhcc
Confidence 899999876544 67899999999999999999999998887743
No 70
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.39 E-value=9.1e-12 Score=130.83 Aligned_cols=115 Identities=21% Similarity=0.297 Sum_probs=107.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC------CCcE
Q 008626 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DLPT 91 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir------diPV 91 (559)
.+||||||++..+..+...|...+|.|.++.++.+++..+.. ..||+||+|+.|++ .+|+++++.++ .+||
T Consensus 3 ~~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~-~~g~~l~~~i~~~~~~~~~~i 79 (457)
T PRK09581 3 ARILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICER--EQPDIILLDVMMPG-MDGFEVCRRLKSDPATTHIPV 79 (457)
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHhh--cCCCEEEEeCCCCC-CCHHHHHHHHHcCcccCCCCE
Confidence 489999999999999999999889999999999999999988 78999999999999 99999999885 4899
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008626 92 IITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (559)
Q Consensus 92 ImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~ 135 (559)
|++|+..+.....+++..||.+||.||++.++|..++..+++..
T Consensus 80 i~~s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 123 (457)
T PRK09581 80 VMVTALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSLTRLK 123 (457)
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998877643
No 71
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=99.39 E-value=4.9e-12 Score=131.75 Aligned_cols=99 Identities=14% Similarity=0.225 Sum_probs=89.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHh-hCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC---CCcEE
Q 008626 18 LRVLLLDQDSSAAAELKFKLE-AMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTI 92 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~-~~gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir---diPVI 92 (559)
++||||||+...+..+..+|. ..+|+|+ .+.++.+|+..+.+ ..||+||+|+.||+ ++|+++++.++ .+|||
T Consensus 1 ~~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~~--~~pDlVllD~~mp~-~~G~e~l~~l~~~~~~pvi 77 (337)
T PRK12555 1 MRIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCAA--QPPDVILMDLEMPR-MDGVEATRRIMAERPCPIL 77 (337)
T ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhc--cCCCEEEEcCCCCC-CCHHHHHHHHHHHCCCcEE
Confidence 589999999999999999995 5688887 78999999999988 78999999999999 99999999985 69999
Q ss_pred EEecCCC--HHHHHHHHHcCCCEEEeCCC
Q 008626 93 ITSNIHC--LSTMMKCIALGAVEFLRKPL 119 (559)
Q Consensus 93 mLSa~~d--~e~v~kAi~~GA~DYLvKPi 119 (559)
++++..+ .....++++.||.+||.||+
T Consensus 78 vvs~~~~~~~~~~~~al~~Ga~d~l~KP~ 106 (337)
T PRK12555 78 IVTSLTERNASRVFEAMGAGALDAVDTPT 106 (337)
T ss_pred EEeCCCCcCHHHHHHHHhcCceEEEECCC
Confidence 9998743 56678899999999999999
No 72
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=99.33 E-value=2e-11 Score=127.91 Aligned_cols=102 Identities=24% Similarity=0.289 Sum_probs=91.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC---CCc
Q 008626 16 KGLRVLLLDQDSSAAAELKFKLEAM-DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLP 90 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~-gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir---diP 90 (559)
+.++||||||+...+..|..+|... +|.++ .+.++.+|+..+.. ..||+||+|+.||+ ++|+++++.++ .+|
T Consensus 2 ~~~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~~--~~~DlVllD~~mp~-~dgle~l~~i~~~~~~p 78 (354)
T PRK00742 2 MKIRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIKK--LNPDVITLDVEMPV-MDGLDALEKIMRLRPTP 78 (354)
T ss_pred CccEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhh--hCCCEEEEeCCCCC-CChHHHHHHHHHhCCCC
Confidence 4579999999999999999999876 88887 89999999999988 78999999999999 99999999885 599
Q ss_pred EEEEecCC--CHHHHHHHHHcCCCEEEeCCCC
Q 008626 91 TIITSNIH--CLSTMMKCIALGAVEFLRKPLS 120 (559)
Q Consensus 91 VImLSa~~--d~e~v~kAi~~GA~DYLvKPis 120 (559)
+|++|+.. ......++++.||++||.||+.
T Consensus 79 iIvls~~~~~~~~~~~~al~~Ga~d~l~kP~~ 110 (354)
T PRK00742 79 VVMVSSLTERGAEITLRALELGAVDFVTKPFL 110 (354)
T ss_pred EEEEecCCCCCHHHHHHHHhCCCcEEEeCCcc
Confidence 99999753 3466788999999999999994
No 73
>PRK13558 bacterio-opsin activator; Provisional
Probab=99.31 E-value=1.7e-11 Score=137.73 Aligned_cols=115 Identities=10% Similarity=0.077 Sum_probs=102.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcEE
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTI 92 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPVI 92 (559)
.++||||||++..+..+..+|...||.|..+.++.+++..+.. ..|||||+|+.||+ ++|+++++.++ ++|||
T Consensus 7 ~~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~~--~~~Dlvl~d~~lp~-~~g~~~l~~l~~~~~~~piI 83 (665)
T PRK13558 7 TRGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVEA--GEIDCVVADHEPDG-FDGLALLEAVRQTTAVPPVV 83 (665)
T ss_pred ceeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhhc--cCCCEEEEeccCCC-CcHHHHHHHHHhcCCCCCEE
Confidence 4799999999999999999998889999999999999999987 77999999999999 99999999996 69999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHH--HHHHHHHHHHHH
Q 008626 93 ITSNIHCLSTMMKCIALGAVEFLRKPLSED--KLRNLWQHVVHK 134 (559)
Q Consensus 93 mLSa~~d~e~v~kAi~~GA~DYLvKPis~e--eL~~iIq~vlrr 134 (559)
++|+..+.+.+.+++..||.+||.||.... .|..+++.++..
T Consensus 84 ~lt~~~~~~~~~~al~~Ga~dyl~k~~~~~~~~l~~~i~~~~~~ 127 (665)
T PRK13558 84 VVPTAGDEAVARRAVDADAAAYVPAVSDDATAAIAERIESAVPE 127 (665)
T ss_pred EEECCCCHHHHHHHHhcCcceEEeccchhHHHHHHHHHHHhhhc
Confidence 999999999999999999999999997643 566666655543
No 74
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.26 E-value=3.5e-11 Score=126.64 Aligned_cols=101 Identities=24% Similarity=0.316 Sum_probs=92.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCC-CEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC---CCcE
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAMD-YIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPT 91 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~g-y~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir---diPV 91 (559)
++|||||||....+..|+++|...+ .+|+ ++.|+.+|++.+.+ ..||+|.+|+.||. |||+++++.++ .+||
T Consensus 1 ~irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~~--~~PDVi~ld~emp~-mdgl~~l~~im~~~p~pV 77 (350)
T COG2201 1 KIRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVKK--LKPDVITLDVEMPV-MDGLEALRKIMRLRPLPV 77 (350)
T ss_pred CcEEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHh--cCCCEEEEeccccc-ccHHHHHHHHhcCCCCcE
Confidence 4799999999999999999999987 5555 99999999999999 89999999999999 99999999986 6999
Q ss_pred EEEecCC--CHHHHHHHHHcCCCEEEeCCCC
Q 008626 92 IITSNIH--CLSTMMKCIALGAVEFLRKPLS 120 (559)
Q Consensus 92 ImLSa~~--d~e~v~kAi~~GA~DYLvKPis 120 (559)
||+|+.. ..+...+++++||.||+.||..
T Consensus 78 imvsslt~~g~~~t~~al~~gAvD~i~kp~~ 108 (350)
T COG2201 78 IMVSSLTEEGAEATLEALELGAVDFIAKPSG 108 (350)
T ss_pred EEEeccccccHHHHHHHHhcCcceeecCCCc
Confidence 9999854 3577899999999999999985
No 75
>PRK09191 two-component response regulator; Provisional
Probab=99.21 E-value=2.2e-10 Score=112.91 Aligned_cols=113 Identities=13% Similarity=0.192 Sum_probs=97.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC---CCcEEE
Q 008626 18 LRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTII 93 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir---diPVIm 93 (559)
.+|||+||++..+..+...|+..|+.++ .+.++.+++..+.+ ..||+||+|+.||+.++|+++++.++ .+|||+
T Consensus 138 ~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~~--~~~dlvi~d~~~~~~~~g~e~l~~l~~~~~~pii~ 215 (261)
T PRK09191 138 TRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAKK--TRPGLILADIQLADGSSGIDAVNDILKTFDVPVIF 215 (261)
T ss_pred CeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHhc--cCCCEEEEecCCCCCCCHHHHHHHHHHhCCCCEEE
Confidence 5899999999999999999998899988 78999999999988 78999999999994168999998875 699999
Q ss_pred EecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008626 94 TSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 94 LSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
+|+..+.... +...|+.+||.||++.++|...+++++..
T Consensus 216 ls~~~~~~~~--~~~~~~~~~l~kP~~~~~l~~~i~~~~~~ 254 (261)
T PRK09191 216 ITAFPERLLT--GERPEPAFLITKPFQPDTVKAAISQALFF 254 (261)
T ss_pred EeCCCcHHHH--HHhcccCceEECCCCHHHHHHHHHHHHhc
Confidence 9998765443 44567899999999999999999877644
No 76
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=99.21 E-value=2.4e-10 Score=90.97 Aligned_cols=108 Identities=21% Similarity=0.340 Sum_probs=97.7
Q ss_pred EEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcEEEEec
Q 008626 21 LLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTIITSN 96 (559)
Q Consensus 21 LIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPVImLSa 96 (559)
|+++++...+..+...|...|+.+..+.+..+++..+.. ..+|++|+|..+++ .+|+++++.++ .+|+|+++.
T Consensus 1 l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~ii~~~~~~~-~~~~~~~~~l~~~~~~~~~i~~~~ 77 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAE--EKPDLILLDIMMPG-MDGLELLRRIRKRGPDIPIIFLTA 77 (113)
T ss_pred CeecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHHHh--CCCCEEEEecCCCC-CchHHHHHHHHHhCCCCCEEEEEe
Confidence 478999999999999999889999999999999999987 68999999999999 99999888774 589999998
Q ss_pred CCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Q 008626 97 IHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHV 131 (559)
Q Consensus 97 ~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~v 131 (559)
..+......++..|+.+|+.||++.++|...++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~i~~p~~~~~l~~~l~~~ 112 (113)
T cd00156 78 HGDDEDAVEALKAGADDYLTKPFSPEELLARIRAL 112 (113)
T ss_pred cccHHHHHHHHHcChhhHccCCCCHHHHHHHHHhh
Confidence 88888888999999999999999999998887653
No 77
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=99.18 E-value=1.9e-10 Score=111.86 Aligned_cols=117 Identities=19% Similarity=0.227 Sum_probs=102.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHc-C--CCcEE
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA-K--DLPTI 92 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~I-r--diPVI 92 (559)
.+|||++||++..+..+...|...||+++ ++.++.++...+.. ..||+||+|+.+|. .|-.+-+... . ..|||
T Consensus 5 ~lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~~--~~pDvVildie~p~-rd~~e~~~~~~~~~~~piv 81 (194)
T COG3707 5 LLRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCER--LQPDVVILDIEMPR-RDIIEALLLASENVARPIV 81 (194)
T ss_pred ccceeeccccccchhhHHHHHHHcCCeEeeeecccccchhHHHh--cCCCEEEEecCCCC-ccHHHHHHHhhcCCCCCEE
Confidence 58999999999999999999999999877 78888889888888 88999999999999 7744433333 2 58999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008626 93 ITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 136 (559)
Q Consensus 93 mLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~ 136 (559)
+++++++...+..+++.||.+||+||++...|+.++.-+..+..
T Consensus 82 ~lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~vA~srf~ 125 (194)
T COG3707 82 ALTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILDVAVSRFE 125 (194)
T ss_pred EEEccCChHHHHHHHHcCCeEEEecCcchhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988776644
No 78
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=99.17 E-value=3e-10 Score=131.59 Aligned_cols=115 Identities=23% Similarity=0.304 Sum_probs=105.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcE
Q 008626 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPT 91 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPV 91 (559)
.+.+|||||||+..+..+...|...||+|+.+.++.+|++.+.+....||+||+ .|++ ++|+++++.++ .+||
T Consensus 696 ~~~~ILvVddd~~~~~~l~~~L~~~G~~v~~~~s~~~al~~l~~~~~~~DlVll--~~~~-~~g~~l~~~l~~~~~~ipI 772 (828)
T PRK13837 696 RGETVLLVEPDDATLERYEEKLAALGYEPVGFSTLAAAIAWISKGPERFDLVLV--DDRL-LDEEQAAAALHAAAPTLPI 772 (828)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCceEEEE--CCCC-CCHHHHHHHHHhhCCCCCE
Confidence 357899999999999999999999999999999999999999774345899999 7899 99999999885 6999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008626 92 IITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 92 ImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
|++|+........+++..| ++||.||++.++|..+++++++.
T Consensus 773 Ivls~~~~~~~~~~~~~~G-~d~L~KP~~~~~L~~~l~~~l~~ 814 (828)
T PRK13837 773 ILGGNSKTMALSPDLLASV-AEILAKPISSRTLAYALRTALAT 814 (828)
T ss_pred EEEeCCCchhhhhhHhhcc-CcEEeCCCCHHHHHHHHHHHHcc
Confidence 9999999999999999999 99999999999999999888764
No 79
>PRK13557 histidine kinase; Provisional
Probab=99.06 E-value=2e-09 Score=115.63 Aligned_cols=117 Identities=15% Similarity=0.196 Sum_probs=104.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcE
Q 008626 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPT 91 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPV 91 (559)
.+.+||||||+...+..+..+|+..||.+..+.++.+|+..+... ..||+||+|..|++.++|+++++.++ .+||
T Consensus 414 ~~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~-~~~d~vi~d~~~~~~~~~~~~~~~l~~~~~~~~i 492 (540)
T PRK13557 414 GTETILIVDDRPDVAELARMILEDFGYRTLVASNGREALEILDSH-PEVDLLFTDLIMPGGMNGVMLAREARRRQPKIKV 492 (540)
T ss_pred CCceEEEEcCcHHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHhcC-CCceEEEEeccCCCCCCHHHHHHHHHHhCCCCcE
Confidence 356899999999999999999999999999999999999998761 36999999999993178999998886 6999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008626 92 IITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 92 ImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
|+++...+......++..|+.+|+.||++.++|..+++.++.
T Consensus 493 i~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~ 534 (540)
T PRK13557 493 LLTTGYAEASIERTDAGGSEFDILNKPYRRAELARRVRMVLD 534 (540)
T ss_pred EEEcCCCchhhhhhhccccCCceeeCCCCHHHHHHHHHHHhc
Confidence 999999988888889999999999999999999998877654
No 80
>PRK10693 response regulator of RpoS; Provisional
Probab=99.00 E-value=2.2e-09 Score=110.84 Aligned_cols=87 Identities=18% Similarity=0.316 Sum_probs=79.4
Q ss_pred EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCC-C
Q 008626 46 TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTIITSNIHCLSTMMKCIALGAVEFLRKPL-S 120 (559)
Q Consensus 46 ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPVImLSa~~d~e~v~kAi~~GA~DYLvKPi-s 120 (559)
.+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.++ .+|||++|+..+.+.+.++++.||+|||.||+ +
T Consensus 2 ~a~~g~~al~~l~~--~~pDlVL~D~~mp~-~~Gle~~~~ir~~~~~ipiI~lt~~~~~~~~~~al~~Ga~dyl~KP~~~ 78 (303)
T PRK10693 2 LAANGVDALELLGG--FTPDLIICDLAMPR-MNGIEFVEHLRNRGDQTPVLVISATENMADIAKALRLGVQDVLLKPVKD 78 (303)
T ss_pred EeCCHHHHHHHHhc--CCCCEEEEeCCCCC-CCHHHHHHHHHhcCCCCcEEEEECCCCHHHHHHHHHCCCcEEEECCCCc
Confidence 46889999999988 78999999999999 99999999986 69999999999999999999999999999999 5
Q ss_pred HHHHHHHHHHHHHHH
Q 008626 121 EDKLRNLWQHVVHKA 135 (559)
Q Consensus 121 ~eeL~~iIq~vlrr~ 135 (559)
.++|..+++.+++..
T Consensus 79 ~~~L~~~i~~~l~~~ 93 (303)
T PRK10693 79 LNRLREMVFACLYPS 93 (303)
T ss_pred HHHHHHHHHHHhhhh
Confidence 899999988877543
No 81
>PRK15029 arginine decarboxylase; Provisional
Probab=98.84 E-value=1.5e-08 Score=116.44 Aligned_cols=117 Identities=11% Similarity=0.129 Sum_probs=91.2
Q ss_pred cEEEEEeCCHH--------HHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHH----HHHHH
Q 008626 18 LRVLLLDQDSS--------AAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSF----KFLET 85 (559)
Q Consensus 18 lrVLIVDDD~~--------~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~----eLLe~ 85 (559)
|+|||||||.. .++.|+..|+..||+|+.+.++.+|+..+... ..||+||+|+.||+ ++|+ ++++.
T Consensus 1 MkILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~-~~~DlVLLD~~LPd-~dG~~~~~ell~~ 78 (755)
T PRK15029 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSN-EAIDCLMFSYQMEH-PDEHQNVRQLIGK 78 (755)
T ss_pred CeEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhc-CCCcEEEEECCCCC-CccchhHHHHHHH
Confidence 37999999995 69999999999999999999999999999762 37999999999999 9997 88888
Q ss_pred cC----CCcEEEEecCCC-HHHHHHHHHcCCCEEEeCCCCHHHH-HHHHHHHHHHHH
Q 008626 86 AK----DLPTIITSNIHC-LSTMMKCIALGAVEFLRKPLSEDKL-RNLWQHVVHKAF 136 (559)
Q Consensus 86 Ir----diPVImLSa~~d-~e~v~kAi~~GA~DYLvKPis~eeL-~~iIq~vlrr~~ 136 (559)
|+ ++||||+|+..+ .+.+..-.---+++|+-+--+..++ ..++....++..
T Consensus 79 IR~~~~~iPIIlLTar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 135 (755)
T PRK15029 79 LHERQQNVPVFLLGDREKALAAMDRDLLELVDEFAWILEDTADFIAGRAVAAMTRYR 135 (755)
T ss_pred HHhhCCCCCEEEEEcCCcccccCCHHHHHhhheEEEecCCCHHHHHHHHHHHHHHHH
Confidence 86 699999999986 2222222223467888876655554 444555555544
No 82
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=98.76 E-value=3.6e-08 Score=99.49 Aligned_cols=113 Identities=18% Similarity=0.292 Sum_probs=98.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhC-CCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCc
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAM-DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLP 90 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~-gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diP 90 (559)
+++|+++||++..+..|..++... .+++. .+.++.++++.+.. ..+|++++|+.|++ ++|+++...++ ..+
T Consensus 1 m~~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~fldI~~~~-~~G~ela~~i~~~~~~~~ 77 (244)
T COG3279 1 MLKVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQG--LRPDLVFLDIAMPD-INGIELAARIRKGDPRPA 77 (244)
T ss_pred CCcEEEecCCHHHHHHHHHHHHhhhhcCeeeeeccchhhHHHHhc--cCCCeEEEeeccCc-cchHHHHHHhcccCCCCe
Confidence 479999999999999999999842 34333 89999999999999 68999999999999 99999999997 378
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008626 91 TIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 91 VImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
|+++|++++ .+..+++..|.|||.||++.+.|..++..+.+.
T Consensus 78 Ivfvt~~~~--~a~~afev~a~d~i~kp~~~~~l~~~l~~~~~~ 119 (244)
T COG3279 78 IVFVTAHDE--YAVAAFEVEALDYLLKPISEERLAKTLERLRRY 119 (244)
T ss_pred EEEEEehHH--HHHHHHhHHHHhhhcCcchHHHHHHHHHHHHHH
Confidence 888998765 566777899999999999999999999887765
No 83
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=98.25 E-value=1e-05 Score=93.87 Aligned_cols=111 Identities=17% Similarity=0.144 Sum_probs=94.2
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHH-cC-----C
Q 008626 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLET-AK-----D 88 (559)
Q Consensus 15 p~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~-Ir-----d 88 (559)
..+.+|+|+||++..+..+..+|+..||.|..+.+..+ +.. ..||++|+|+.|++ ..+...+.. ++ .
T Consensus 534 ~~g~~ili~d~~~~~~~~l~~~L~~~g~~v~~~~~~~~----l~~--~~~d~il~~~~~~~-~~~~~~~~~~~~~~~~~~ 606 (919)
T PRK11107 534 LAGKRLLYVEPNSAAAQATLDILSETPLEVTYSPTLSQ----LPE--AHYDILLLGLPVTF-REPLTMLHERLAKAKSMT 606 (919)
T ss_pred cCCCeEEEEeCCHHHHHHHHHHHHHCCCEEEEcCCHHH----hcc--CCCCEEEecccCCC-CCCHHHHHHHHHhhhhcC
Confidence 45689999999999999999999999999999988887 344 67999999999998 666544333 32 4
Q ss_pred CcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 008626 89 LPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVV 132 (559)
Q Consensus 89 iPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vl 132 (559)
.++|+++...+......+.+.|+++|+.||+...+|...+....
T Consensus 607 ~~~i~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 650 (919)
T PRK11107 607 DFLILALPCHEQVLAEQLKQDGADACLSKPLSHTRLLPALLEPC 650 (919)
T ss_pred CcEEEEeCCcchhhHHHHhhCCCceEECCCCCHHHHHHHHHHhh
Confidence 67888888888889999999999999999999999999887644
No 84
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=97.72 E-value=2.9e-05 Score=84.69 Aligned_cols=91 Identities=18% Similarity=0.217 Sum_probs=82.5
Q ss_pred CEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC--CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCC
Q 008626 42 YIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNIHCLSTMMKCIALGAVEFLRKPL 119 (559)
Q Consensus 42 y~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir--diPVImLSa~~d~e~v~kAi~~GA~DYLvKPi 119 (559)
|+|.++..+..|+..+.. +.+|++|+|+.||+ ++||++++.++ ...++|+|...+...-.++.++||++||+||+
T Consensus 13 ~~v~~a~~g~~~l~~~~~--~~~~~~lld~~m~~-~~~~~~~~~lk~~~~~~v~~t~~~~~~~~~~~~~~~~~~~l~~~~ 89 (435)
T COG3706 13 KEVATAKKGLIALAILLD--HKPDYKLLDVMMPG-MDGFELCRRLKAEPATVVMVTALDDSAPRVRGLKAGADDFLTKPV 89 (435)
T ss_pred hhhhhccchHHHHHHHhc--CCCCeEEeecccCC-cCchhHHHHHhcCCcceEEEEecCCCCcchhHHhhhhhhhccCCC
Confidence 678889999999999999 89999999999999 99999999997 34579999999989999999999999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 008626 120 SEDKLRNLWQHVVHKA 135 (559)
Q Consensus 120 s~eeL~~iIq~vlrr~ 135 (559)
+...+..+...+.+..
T Consensus 90 ~~~~~~~r~~~l~~~k 105 (435)
T COG3706 90 NDSQLFLRAKSLVRLK 105 (435)
T ss_pred ChHHHHHhhhhhccch
Confidence 9999999888777653
No 85
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=97.67 E-value=0.00032 Score=48.36 Aligned_cols=55 Identities=25% Similarity=0.380 Sum_probs=49.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCC
Q 008626 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTS 74 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MP 74 (559)
++|++++++...+..+...+...||++..+.+..+++..+.. ..+|++++|+.++
T Consensus 1 ~~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~vi~~~~~~ 55 (55)
T smart00448 1 MRILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKE--EKPDLILLDIMMP 55 (55)
T ss_pred CeEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHHh--cCCCEEEEeccCC
Confidence 479999999999999999999899999999999999998877 6799999998653
No 86
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=97.33 E-value=0.0012 Score=59.05 Aligned_cols=103 Identities=15% Similarity=0.202 Sum_probs=71.0
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHc----CCCcEEEE
Q 008626 19 RVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA----KDLPTIIT 94 (559)
Q Consensus 19 rVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~I----rdiPVImL 94 (559)
||||||||...+..|+.+|+-.|+++..+...+- .....+ ...+.+++-..-.. ...++++.+ ..+|||++
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~-~~~~~~--~~~~~~~v~~g~~~--~~~~~l~~l~~~~~~~Pvlll 75 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDW-SQADWS--SPWEACAVILGSCS--KLAELLKELLKWAPHIPVLLL 75 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHH-HHhhhh--cCCcEEEEEecCch--hHHHHHHHHHhhCCCCCEEEE
Confidence 6999999999999999999999999888776443 333344 34454444332111 123444444 38999999
Q ss_pred ecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Q 008626 95 SNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHV 131 (559)
Q Consensus 95 Sa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~v 131 (559)
......... ..+.+-|-.|++..+|.+.++++
T Consensus 76 g~~~~~~~~-----~nvvg~Le~Pl~Y~qLt~~L~~c 107 (109)
T PF06490_consen 76 GEHDSPEEL-----PNVVGELEEPLNYPQLTDALHRC 107 (109)
T ss_pred CCCCccccc-----cCeeEecCCCCCHHHHHHHHHHh
Confidence 887765111 11666799999999999988765
No 87
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=96.49 E-value=0.004 Score=47.42 Aligned_cols=48 Identities=29% Similarity=0.383 Sum_probs=41.6
Q ss_pred ceecCHHHHHHHHHHHHHhCCCCCCChHHHhhcCCCCCCHHHHHHhhhhhh
Q 008626 319 KVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYR 369 (559)
Q Consensus 319 r~~Wt~~lh~~Fv~av~~lg~~~a~pk~il~~m~v~~lt~~~v~shlQkyr 369 (559)
|-.||+|=+.+|++||.++|.+ .-+.|.+.|+ .|-|..++++|.++|+
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~--~W~~Ia~~~~-~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKD--NWKKIAKRMP-GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTT--HHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCc--HHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence 4589999999999999999955 5788999998 8999999999999985
No 88
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=96.24 E-value=0.16 Score=47.20 Aligned_cols=115 Identities=11% Similarity=0.088 Sum_probs=81.6
Q ss_pred cEEEEE----eCCHHHHHHHHHHHhhCCCEEE---EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHH-HHHHHcC--
Q 008626 18 LRVLLL----DQDSSAAAELKFKLEAMDYIVS---TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSF-KFLETAK-- 87 (559)
Q Consensus 18 lrVLIV----DDD~~~~~~L~~~L~~~gy~V~---ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~-eLLe~Ir-- 87 (559)
.||++. |-+..-...+..+|+..||+|+ ...+.+++++...+ ..+|+|.+-..+...+..+ ++++.++
T Consensus 3 ~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e--~~adii~iSsl~~~~~~~~~~~~~~L~~~ 80 (132)
T TIGR00640 3 PRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVE--ADVHVVGVSSLAGGHLTLVPALRKELDKL 80 (132)
T ss_pred CEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHH--cCCCEEEEcCchhhhHHHHHHHHHHHHhc
Confidence 455554 5556666778888899999998 45678999999988 7899999877665412222 2344443
Q ss_pred --CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008626 88 --DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 88 --diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
....|++-+....+...+..++|+++|+..-.+..++...+...+..
T Consensus 81 g~~~i~vivGG~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~~~~~ 129 (132)
T TIGR00640 81 GRPDILVVVGGVIPPQDFDELKEMGVAEIFGPGTPIPESAIFLLKKLRK 129 (132)
T ss_pred CCCCCEEEEeCCCChHhHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHH
Confidence 22335555444555677889999999999999999999888776543
No 89
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=96.14 E-value=0.085 Score=47.77 Aligned_cols=104 Identities=13% Similarity=0.050 Sum_probs=76.2
Q ss_pred eCCHHHHHHHHHHHhhCCCEEEE---ECCHHHHHHHhhcCCCCeeEEEEecCCCCCCC-HHHHHHHcC----CCcEEEEe
Q 008626 24 DQDSSAAAELKFKLEAMDYIVST---FYNENEALSAFSDKPENFHVAIVEVTTSNTDG-SFKFLETAK----DLPTIITS 95 (559)
Q Consensus 24 DDD~~~~~~L~~~L~~~gy~V~t---a~~~~eAL~~Lre~~~~pDLVIvDv~MPd~md-G~eLLe~Ir----diPVImLS 95 (559)
|.+..=...+..+|+..||+|+. ....++.++.+.+ ..+|+|.+-..+..... --++++.++ .-..|++.
T Consensus 10 d~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~--~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~G 87 (122)
T cd02071 10 DGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQ--EDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGG 87 (122)
T ss_pred ChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 56666667778888889999984 4468888888888 78999999888765211 234455554 23445666
Q ss_pred cCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Q 008626 96 NIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQ 129 (559)
Q Consensus 96 a~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq 129 (559)
+....+...++.++|.++|+-.-.+.+++...++
T Consensus 88 G~~~~~~~~~~~~~G~d~~~~~~~~~~~~~~~~~ 121 (122)
T cd02071 88 GIIPPEDYELLKEMGVAEIFGPGTSIEEIIDKIR 121 (122)
T ss_pred CCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHh
Confidence 6566667788899999999999999888876543
No 90
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=96.06 E-value=0.13 Score=47.92 Aligned_cols=114 Identities=12% Similarity=0.057 Sum_probs=84.7
Q ss_pred CCcEEEEE----eCCHHHHHHHHHHHhhCCCEEEE---ECCHHHHHHHhhcCCCCeeEEEEecCCCCCC-CHHHHHHHcC
Q 008626 16 KGLRVLLL----DQDSSAAAELKFKLEAMDYIVST---FYNENEALSAFSDKPENFHVAIVEVTTSNTD-GSFKFLETAK 87 (559)
Q Consensus 16 ~glrVLIV----DDD~~~~~~L~~~L~~~gy~V~t---a~~~~eAL~~Lre~~~~pDLVIvDv~MPd~m-dG~eLLe~Ir 87 (559)
+..+||+. |.+..=...+..+|+..||+|+. ....++.++.+.+ ..+|+|.+-..+...+ ...++++.++
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~--~~~d~V~lS~~~~~~~~~~~~~~~~L~ 79 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIE--TDADAILVSSLYGHGEIDCRGLREKCI 79 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEcCccccCHHHHHHHHHHHH
Confidence 45678887 77777778888999999999994 4568889999988 7899999988777622 1234555553
Q ss_pred -----CCcEEEEecCC------CHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 008626 88 -----DLPTIITSNIH------CLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVV 132 (559)
Q Consensus 88 -----diPVImLSa~~------d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vl 132 (559)
+++| ++.+.. ..+...++.+.|++.++....+.+++...++..+
T Consensus 80 ~~~~~~~~i-~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~~~~ 134 (137)
T PRK02261 80 EAGLGDILL-YVGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLKKDL 134 (137)
T ss_pred hcCCCCCeE-EEECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHh
Confidence 4544 444432 4556678899999999999999999998876654
No 91
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=95.57 E-value=0.053 Score=64.67 Aligned_cols=52 Identities=13% Similarity=0.149 Sum_probs=44.5
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCC
Q 008626 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTT 73 (559)
Q Consensus 14 ~p~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~M 73 (559)
...+.+||||||++..+..+..+|+..||+|+++.++ +.. ..|||||+|..+
T Consensus 686 ~l~g~~vLlvdD~~~~r~~l~~~L~~~G~~v~~a~~~------~~~--~~~Dlvl~D~~~ 737 (894)
T PRK10618 686 LLDGVTVLLDITSEEVRKIVTRQLENWGATCITPDER------LIS--QEYDIFLTDNPS 737 (894)
T ss_pred cCCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEcCcc------ccC--CCCCEEEECCCC
Confidence 3457899999999999999999999999999988753 223 579999999984
No 92
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=95.35 E-value=0.11 Score=46.80 Aligned_cols=103 Identities=12% Similarity=0.130 Sum_probs=74.7
Q ss_pred HHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCC-CCHHHHHHHcC----CCcEEEEecCCCHHHH
Q 008626 29 AAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNT-DGSFKFLETAK----DLPTIITSNIHCLSTM 103 (559)
Q Consensus 29 ~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~-mdG~eLLe~Ir----diPVImLSa~~d~e~v 103 (559)
....|...|...||+|+.+.+.++++..+++. ..++.||+++. .+. ....++++.++ .+||.+++.....+.+
T Consensus 5 ~~~~l~~~L~~~~~~vv~~~~~dd~~~~i~~~-~~i~avvi~~d-~~~~~~~~~ll~~i~~~~~~iPVFl~~~~~~~~~l 82 (115)
T PF03709_consen 5 ASRELAEALEQRGREVVDADSTDDALAIIESF-TDIAAVVISWD-GEEEDEAQELLDKIRERNFGIPVFLLAERDTTEDL 82 (115)
T ss_dssp HHHHHHHHHHHTTTEEEEESSHHHHHHHHHCT-TTEEEEEEECH-HHHHHHHHHHHHHHHHHSTT-EEEEEESCCHHHCC
T ss_pred HHHHHHHHHHHCCCEEEEeCChHHHHHHHHhC-CCeeEEEEEcc-cccchhHHHHHHHHHHhCCCCCEEEEecCCCcccC
Confidence 34678888888999999999999999999985 57899999997 220 12356677665 7999999997766666
Q ss_pred HHHHHcCCCEEEeCCCCHHH-HHHHHHHHHH
Q 008626 104 MKCIALGAVEFLRKPLSEDK-LRNLWQHVVH 133 (559)
Q Consensus 104 ~kAi~~GA~DYLvKPis~ee-L~~iIq~vlr 133 (559)
-..+-.-+++|+-..-+..+ +...|..+.+
T Consensus 83 ~~~~l~~v~~~i~l~~~t~~fia~rI~~Aa~ 113 (115)
T PF03709_consen 83 PAEVLGEVDGFIWLFEDTAEFIARRIEAAAR 113 (115)
T ss_dssp CHHHHCCESEEEETTTTTHHHHHHHHHHHHH
T ss_pred CHHHHhhccEEEEecCCCHHHHHHHHHHHHH
Confidence 55566678899988765544 4444554443
No 93
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=94.54 E-value=0.29 Score=43.58 Aligned_cols=91 Identities=10% Similarity=-0.003 Sum_probs=63.8
Q ss_pred eCCHHHHHHHHHHHhhCCCEEEE---ECCHHHHHHHhhcCCCCeeEEEEecCCCCCC-CHHHHHHHcC---C-CcEEEEe
Q 008626 24 DQDSSAAAELKFKLEAMDYIVST---FYNENEALSAFSDKPENFHVAIVEVTTSNTD-GSFKFLETAK---D-LPTIITS 95 (559)
Q Consensus 24 DDD~~~~~~L~~~L~~~gy~V~t---a~~~~eAL~~Lre~~~~pDLVIvDv~MPd~m-dG~eLLe~Ir---d-iPVImLS 95 (559)
|.+..=...+..+|+..||+|+. ....++.++.+.+ ..||+|.+-..+.... ...++++.++ . -..|++.
T Consensus 10 e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~--~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vG 87 (119)
T cd02067 10 DGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKE--EDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVG 87 (119)
T ss_pred chhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEE
Confidence 55566667888999999999974 3467788888888 7899999988766511 2345555554 1 2445666
Q ss_pred cCCCHHHHHHHHHcCCCEEEe
Q 008626 96 NIHCLSTMMKCIALGAVEFLR 116 (559)
Q Consensus 96 a~~d~e~v~kAi~~GA~DYLv 116 (559)
+..-......+...|++.|+.
T Consensus 88 G~~~~~~~~~~~~~G~D~~~~ 108 (119)
T cd02067 88 GAIVTRDFKFLKEIGVDAYFG 108 (119)
T ss_pred CCCCChhHHHHHHcCCeEEEC
Confidence 665555445788999977775
No 94
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=93.59 E-value=0.37 Score=56.20 Aligned_cols=115 Identities=13% Similarity=0.083 Sum_probs=77.5
Q ss_pred cEEEEEeCCH-HH-----HHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----
Q 008626 18 LRVLLLDQDS-SA-----AAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---- 87 (559)
Q Consensus 18 lrVLIVDDD~-~~-----~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir---- 87 (559)
|+|+||+++. .. .+.|...|++.||+|+.+.+..+++..+++. ...+.||+++. + ....++..++
T Consensus 1 ~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~--~~~~~~~~~~~~~~ 75 (713)
T PRK15399 1 MNIIAIMGPHGVFYKDEPIKELESALQAQGFQTIWPQNSVDLLKFIEHN-PRICGVIFDWD--E--YSLDLCSDINQLNE 75 (713)
T ss_pred CcEEEEecccccccccHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhcc-cceeEEEEecc--c--chHHHHHHHHHhCC
Confidence 4688888773 22 4567778888999999999999999999863 57899999963 2 2344666664
Q ss_pred CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCC-HHHHHHHHHHHHHHHHh
Q 008626 88 DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLS-EDKLRNLWQHVVHKAFN 137 (559)
Q Consensus 88 diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis-~eeL~~iIq~vlrr~~~ 137 (559)
++||++++.......+-...-.-+++|+-.-.+ .+.+...|....++...
T Consensus 76 ~~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~y~~ 126 (713)
T PRK15399 76 YLPLYAFINTHSTMDVSVQDMRMALWFFEYALGAAEDIAIRIRQYTNEYLD 126 (713)
T ss_pred CCCEEEEcCccccccCChhHhhhcceeeeeccCCHHHHHHHHHHHHHHHHH
Confidence 799999987654443333333345666664443 44455556666666544
No 95
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=93.00 E-value=1.5 Score=40.99 Aligned_cols=108 Identities=6% Similarity=0.028 Sum_probs=75.8
Q ss_pred eCCHHHHHHHHHHHhhCCCEEE---EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHH-HHHHHcC----CCcEEEEe
Q 008626 24 DQDSSAAAELKFKLEAMDYIVS---TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSF-KFLETAK----DLPTIITS 95 (559)
Q Consensus 24 DDD~~~~~~L~~~L~~~gy~V~---ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~-eLLe~Ir----diPVImLS 95 (559)
|-+..=...+..+|+..||+|+ ...+.++.++...+ ..+|+|.+-..|...+..+ ++.+.++ .-++|++-
T Consensus 12 D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~--~~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~vivG 89 (134)
T TIGR01501 12 DCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIE--TKADAILVSSLYGHGEIDCKGLRQKCDEAGLEGILLYVG 89 (134)
T ss_pred ChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEecccccCHHHHHHHHHHHHHCCCCCCEEEec
Confidence 3344445678889999999999 56788999999998 7899998877775522222 3444443 22445565
Q ss_pred cC-----CCHH-HHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008626 96 NI-----HCLS-TMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 96 a~-----~d~e-~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
+. .+.. ...++.++|++..+-..-..+++.+.+++.++
T Consensus 90 G~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt~~~~iv~~l~~~~~ 133 (134)
T TIGR01501 90 GNLVVGKQDFPDVEKRFKEMGFDRVFAPGTPPEVVIADLKKDLN 133 (134)
T ss_pred CCcCcChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHhc
Confidence 53 2222 24568899999999998999999998877653
No 96
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=92.52 E-value=2.5 Score=40.14 Aligned_cols=112 Identities=16% Similarity=0.178 Sum_probs=80.9
Q ss_pred CCcEEEEE----eCCHHHHHHHHHHHhhCCCEEE---EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHH----HH
Q 008626 16 KGLRVLLL----DQDSSAAAELKFKLEAMDYIVS---TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKF----LE 84 (559)
Q Consensus 16 ~glrVLIV----DDD~~~~~~L~~~L~~~gy~V~---ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eL----Le 84 (559)
...||||. |.+..-...+.+.|+..||+|+ .+.+.+|+.+...+ +..|+|.+...-. ...++ .+
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~--~dv~vIgvSsl~g---~h~~l~~~lve 85 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVE--EDVDVIGVSSLDG---GHLTLVPGLVE 85 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHh--cCCCEEEEEeccc---hHHHHHHHHHH
Confidence 34677765 7788888999999999999998 57799999998877 6788887765322 23333 33
Q ss_pred HcC-----CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008626 85 TAK-----DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 85 ~Ir-----diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
.++ ++. ++.-..-..+...+..++|++.|+.--....+..+-+...+.
T Consensus 86 ~lre~G~~~i~-v~~GGvip~~d~~~l~~~G~~~if~pgt~~~~~~~~v~~~l~ 138 (143)
T COG2185 86 ALREAGVEDIL-VVVGGVIPPGDYQELKEMGVDRIFGPGTPIEEALSDLLTRLG 138 (143)
T ss_pred HHHHhCCcceE-EeecCccCchhHHHHHHhCcceeeCCCCCHHHHHHHHHHHHH
Confidence 443 344 345555566667778889999999988888877776655543
No 97
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=92.44 E-value=1 Score=52.73 Aligned_cols=115 Identities=14% Similarity=0.176 Sum_probs=75.7
Q ss_pred cEEEEEeCCH-H-----HHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----
Q 008626 18 LRVLLLDQDS-S-----AAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---- 87 (559)
Q Consensus 18 lrVLIVDDD~-~-----~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir---- 87 (559)
|+||||+++. . -.+.|...|++.||+|+.+.+..+++..+++. ...+.||+|+. + ....++..++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~--~~~~~~~~~~~~~~ 75 (714)
T PRK15400 1 MNVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDLLKLIENN-ARLCGVIFDWD--K--YNLELCEEISKMNE 75 (714)
T ss_pred CcEEEEccccccccccHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhcc-cceeEEEEecc--h--hhHHHHHHHHHhCC
Confidence 4677777662 1 25667788888999999999999999998863 57889999863 2 2244666664
Q ss_pred CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHHHHh
Q 008626 88 DLPTIITSNIHCLSTMMKCIALGAVEFLRKPL-SEDKLRNLWQHVVHKAFN 137 (559)
Q Consensus 88 diPVImLSa~~d~e~v~kAi~~GA~DYLvKPi-s~eeL~~iIq~vlrr~~~ 137 (559)
++||++++.......+-...-.-+++|+-.-- +.+.+...|....++...
T Consensus 76 ~~Pv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~i~~~~~~y~~ 126 (714)
T PRK15400 76 NLPLYAFANTYSTLDVSLNDLRLQVSFFEYALGAADDIANKIKQTTDEYID 126 (714)
T ss_pred CCCEEEEccccccccCChHHhhhccceeeeccCCHHHHHHHHHHHHHHHHH
Confidence 79999998765444332223233555655433 345555556666665544
No 98
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=92.30 E-value=0.4 Score=50.08 Aligned_cols=82 Identities=12% Similarity=0.092 Sum_probs=56.2
Q ss_pred CCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHH-c-CCCcEEEE-ecCCCHHHHHHHHHcCCCEEEeC
Q 008626 41 DYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLET-A-KDLPTIIT-SNIHCLSTMMKCIALGAVEFLRK 117 (559)
Q Consensus 41 gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~-I-rdiPVImL-Sa~~d~e~v~kAi~~GA~DYLvK 117 (559)
|.+++.+.+..++-+.-. .-.+|++|..+-. .++.. + +...+|++ ....+.+....+++.||.|||.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~-----~~~~~~~p~~~~vv~v~~~~~~~~~~~~a~~~Ga~~~l~~ 71 (322)
T TIGR03815 1 GVELDVAPDPEAARRAWA----RAPLVLVDADMAE-----ACAAAGLPRRRRVVLVGGGEPGGALWRAAAAVGAEHVAVL 71 (322)
T ss_pred CCceEEccCchhhhhccc----cCCeEEECchhhh-----HHHhccCCCCCCEEEEeCCCCCHHHHHHHHHhChhheeeC
Confidence 455666666555533322 2589999886533 12222 2 24445544 44667899999999999999999
Q ss_pred CCCHHHHHHHHHHH
Q 008626 118 PLSEDKLRNLWQHV 131 (559)
Q Consensus 118 Pis~eeL~~iIq~v 131 (559)
|++.++|...+..+
T Consensus 72 P~~~~~l~~~l~~~ 85 (322)
T TIGR03815 72 PEAEGWLVELLADL 85 (322)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999988765
No 99
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=91.54 E-value=0.7 Score=42.79 Aligned_cols=105 Identities=19% Similarity=0.178 Sum_probs=75.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCC----CCHHHHHHHcC--CC
Q 008626 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNT----DGSFKFLETAK--DL 89 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~----mdG~eLLe~Ir--di 89 (559)
.|-+.+.||-+....+....+|...+.+|+.-. ++..+-. ..||++|+.+-.+-. |.-..+.+.+. |-
T Consensus 10 ~gk~LayiEpNstAA~~t~~iL~~tpleVtyr~----t~~~lp~--~hYD~~Ll~vavtfr~n~tm~~~~l~~Al~mtd~ 83 (140)
T COG4999 10 AGKRLAYIEPNSTAAQCTLDILSETPLEVTYRP----TFSALPP--AHYDMMLLGVAVTFRENLTMQHERLAKALSMTDF 83 (140)
T ss_pred ccceeEEecCccHHHHHHHHHHhcCCceEEecc----cccccCh--hhhceeeecccccccCCchHHHHHHHHHHhhhcc
Confidence 357999999999999999999999999998532 3444444 679999999977651 22234444443 44
Q ss_pred cEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHH
Q 008626 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNL 127 (559)
Q Consensus 90 PVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~i 127 (559)
-|+.+-+ ...-.+.+..+.||.++|+||++.-.|+..
T Consensus 84 vilalPs-~~qv~AeqLkQ~g~~~CllKPls~~rLlpt 120 (140)
T COG4999 84 VILALPS-HAQVNAEQLKQDGAGACLLKPLSSTRLLPT 120 (140)
T ss_pred eEEecCc-HHHHhHHHHhhcchHhHhhCcchhhhhHHH
Confidence 4443333 334456677899999999999999888764
No 100
>PLN03162 golden-2 like transcription factor; Provisional
Probab=91.11 E-value=0.49 Score=50.79 Aligned_cols=99 Identities=15% Similarity=0.275 Sum_probs=60.8
Q ss_pred ccccCCCC-----CCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCC----CCCC
Q 008626 431 AVQMWAPP-----GYPPWQQA-----ESWNWKPYPGMPADAWGCPVMPLP---NGPYSSFPQGASGYHNSGV----DDNS 493 (559)
Q Consensus 431 ~~~~~~~~-----~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~----~~~~ 493 (559)
.+|+|+.| ..+.|+-+ .+|. .....+|.+|++.-+ .|||.+.| +..|+.+.. .-|.
T Consensus 358 PLhVWGhPtvd~s~v~mWp~h~~~~p~pW~-----~~Dp~fW~h~~~~~~a~~gtpc~p~p--m~Rfp~ppv~~G~p~~~ 430 (526)
T PLN03162 358 PLKVWGYPTVDHSNVHMWQQPAVATPSYWQ-----AADGSYWQHPATGYDAFSARACYPHP--MQRVPLGTTHAGLPIMA 430 (526)
T ss_pred cceeccCCCCCCcccccccccccCCCCCCC-----CCCcchhhcccccCccccCCcccCch--hhhCCCCCCCCCCcccc
Confidence 67999964 45678643 2442 235568999988743 56775444 445544332 1133
Q ss_pred CCCCCCc---------ccCCCchHHHHHHHHHHhhCCCccCCCCCCCCchhHH
Q 008626 494 YAMPQNS---------VDLHPAEEVIDKVVKEAISKPWLPLPLGLKPPSADSV 537 (559)
Q Consensus 494 ~~~~~~~---------~~~~~~~e~~d~~~~~~~~~pw~plp~glk~p~~~~v 537 (559)
.++|..+ ...++-+.+.|.-||..+--+=..+||-.-| |-++|
T Consensus 431 P~~p~~~~yy~~d~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hp-SkEsi 482 (526)
T PLN03162 431 PGFPDESCYYGDDMLAASMYLCNQSYDSEIGRAAGVAACSKPIETHL-SKEVL 482 (526)
T ss_pred CCCCchhhcccccchhhcccccccccccccccccchhhcccccccCc-cHHHH
Confidence 3333322 2335677889999999998888888888765 44443
No 101
>smart00426 TEA TEA domain.
Probab=89.50 E-value=0.45 Score=39.70 Aligned_cols=46 Identities=24% Similarity=0.361 Sum_probs=30.4
Q ss_pred ecCHHHHHHHHHHHHHhCCCCCCCh-HHHhh--------------cCCCCC--CHHHHHHhhhh
Q 008626 321 DWTPELHKKFVQAVEQLGVDQAIPS-RILEL--------------MKVEGL--TRHNVASHLQK 367 (559)
Q Consensus 321 ~Wt~~lh~~Fv~av~~lg~~~a~pk-~il~~--------------m~v~~l--t~~~v~shlQk 367 (559)
+|.++|-..|++|+...--. .+-| +++.. -...|. |+.+|.||||-
T Consensus 5 vWp~~lE~Af~~aL~~~~~~-g~~kik~~~r~k~~gRNelIs~YI~~~tGk~Rt~KQVsShIQv 67 (68)
T smart00426 5 VWSPDIEQAFQEALAIYPPC-GRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQV 67 (68)
T ss_pred cCcHHHHHHHHHHHHHcCcc-CcccchhhhcCcccchhHHHHHHHHHHhCCccchhhhcchhee
Confidence 79999999999999987421 1211 22211 012444 88999999994
No 102
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=89.13 E-value=6.5 Score=36.64 Aligned_cols=102 Identities=8% Similarity=0.013 Sum_probs=71.1
Q ss_pred CCHHHHHHHHHHHhhCCCEEE---EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCH-HHHHHHcC-----CCcEEEEe
Q 008626 25 QDSSAAAELKFKLEAMDYIVS---TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGS-FKFLETAK-----DLPTIITS 95 (559)
Q Consensus 25 DD~~~~~~L~~~L~~~gy~V~---ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG-~eLLe~Ir-----diPVImLS 95 (559)
-+..=...+..+|+..||+|+ ...+.++.++...+ +.+|+|.+-.-|...+.. -++++.++ +++| ++-
T Consensus 11 ~HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~aa~~--~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~v-ivG 87 (128)
T cd02072 11 CHAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIE--TDADAILVSSLYGHGEIDCKGLREKCDEAGLKDILL-YVG 87 (128)
T ss_pred hhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeE-EEE
Confidence 344445678889999999998 56688999999988 789999987777652333 23444443 5444 444
Q ss_pred cCC-----C-HHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Q 008626 96 NIH-----C-LSTMMKCIALGAVEFLRKPLSEDKLRNLWQ 129 (559)
Q Consensus 96 a~~-----d-~e~v~kAi~~GA~DYLvKPis~eeL~~iIq 129 (559)
+.. + .+...+..++|++..+....+.+++...++
T Consensus 88 G~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt~~~~i~~~l~ 127 (128)
T cd02072 88 GNLVVGKQDFEDVEKRFKEMGFDRVFAPGTPPEEAIADLK 127 (128)
T ss_pred CCCCCChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHh
Confidence 431 1 334566889999999998888888877653
No 103
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=88.44 E-value=3.8 Score=35.97 Aligned_cols=90 Identities=16% Similarity=0.149 Sum_probs=57.2
Q ss_pred eCCHHHHHHHHHHHhhCCCEEEEE---CCHHHHHHHhhcCCCCeeEEEEecCCCCCC-CHHHHHHHcC----CCcEEEEe
Q 008626 24 DQDSSAAAELKFKLEAMDYIVSTF---YNENEALSAFSDKPENFHVAIVEVTTSNTD-GSFKFLETAK----DLPTIITS 95 (559)
Q Consensus 24 DDD~~~~~~L~~~L~~~gy~V~ta---~~~~eAL~~Lre~~~~pDLVIvDv~MPd~m-dG~eLLe~Ir----diPVImLS 95 (559)
+-.+.-...+..+|++.||+|..+ .+.++..+.+.+ .+||+|.+...+.... ...++++.++ +++ |++-
T Consensus 11 ~~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~--~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~-iv~G 87 (121)
T PF02310_consen 11 EVHPLGLLYLAAYLRKAGHEVDILDANVPPEELVEALRA--ERPDVVGISVSMTPNLPEAKRLARAIKERNPNIP-IVVG 87 (121)
T ss_dssp SSTSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHH--TTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSE-EEEE
T ss_pred cchhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhc--CCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCE-EEEE
Confidence 345667788999999999999866 345777788888 7899999988544302 2345555554 344 4455
Q ss_pred cCCCHHHHHHHHH--cCCCEEEe
Q 008626 96 NIHCLSTMMKCIA--LGAVEFLR 116 (559)
Q Consensus 96 a~~d~e~v~kAi~--~GA~DYLv 116 (559)
+..-...-...++ .|++..+.
T Consensus 88 G~~~t~~~~~~l~~~~~~D~vv~ 110 (121)
T PF02310_consen 88 GPHATADPEEILREYPGIDYVVR 110 (121)
T ss_dssp ESSSGHHHHHHHHHHHTSEEEEE
T ss_pred CCchhcChHHHhccCcCcceecC
Confidence 5443444444554 56555444
No 104
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=88.12 E-value=5.9 Score=46.61 Aligned_cols=115 Identities=12% Similarity=0.102 Sum_probs=78.8
Q ss_pred cEEEEE----eCCHHHHHHHHHHHhhCCCEEEE---ECCHHHHHHHhhcCCCCeeEEEEecCCCCCCC-HHHHHHHcC--
Q 008626 18 LRVLLL----DQDSSAAAELKFKLEAMDYIVST---FYNENEALSAFSDKPENFHVAIVEVTTSNTDG-SFKFLETAK-- 87 (559)
Q Consensus 18 lrVLIV----DDD~~~~~~L~~~L~~~gy~V~t---a~~~~eAL~~Lre~~~~pDLVIvDv~MPd~md-G~eLLe~Ir-- 87 (559)
.+|+|. |.+..-...+..+|+..||+|.. +.+.+++.+...+ ..+|+|++...+...+. .-.+++.++
T Consensus 583 pkV~LatlG~d~H~~ra~fv~~~l~~~GfeV~~~~~~~s~e~~v~aa~~--~~a~ivvlcs~d~~~~e~~~~l~~~Lk~~ 660 (714)
T PRK09426 583 PRILVAKMGQDGHDRGAKVIATAFADLGFDVDIGPLFQTPEEAARQAVE--NDVHVVGVSSLAAGHKTLVPALIEALKKL 660 (714)
T ss_pred ceEEEEecCCcchhHhHHHHHHHHHhCCeeEecCCCCCCHHHHHHHHHH--cCCCEEEEeccchhhHHHHHHHHHHHHhc
Confidence 456654 44455556778888888999972 4578899898888 78999998776655222 234556665
Q ss_pred CCc-E-EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008626 88 DLP-T-IITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 88 diP-V-ImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
..+ | |++.+.--.+......+.|+++|+.--.+..+++..++..+.-
T Consensus 661 G~~~v~vl~GG~~~~~~~~~l~~aGvD~~i~~g~d~~~~L~~l~~~l~~ 709 (714)
T PRK09426 661 GREDIMVVVGGVIPPQDYDFLYEAGVAAIFGPGTVIADAAIDLLELLSA 709 (714)
T ss_pred CCCCcEEEEeCCCChhhHHHHHhCCCCEEECCCCCHHHHHHHHHHHHHH
Confidence 232 4 4455442233345678899999999999999988887776643
No 105
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=87.92 E-value=2.7 Score=49.22 Aligned_cols=28 Identities=39% Similarity=0.560 Sum_probs=15.6
Q ss_pred CCCCCCCCchhHHHHHHHHcCCCCCCCC
Q 008626 525 LPLGLKPPSADSVLAELSRQGISTIPPR 552 (559)
Q Consensus 525 lp~glk~p~~~~v~~el~~qg~~~~p~~ 552 (559)
||.||||=-+=-|=.-+.|-.-++|=|+
T Consensus 610 lP~gLkpKK~~k~e~~Mrr~nW~kI~p~ 637 (1102)
T KOG1924|consen 610 LPFGLKPKKVYKPEVPMRRFNWSKIVPR 637 (1102)
T ss_pred CCCCCCccccCCCCCccccCCccccCcc
Confidence 7889998554444334444444444443
No 106
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=87.35 E-value=5.9 Score=39.16 Aligned_cols=97 Identities=20% Similarity=0.264 Sum_probs=63.5
Q ss_pred CcEEEEEeCC----H--HHHHHHHHHHhh-CCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecC-------CCCCCCHHH
Q 008626 17 GLRVLLLDQD----S--SAAAELKFKLEA-MDYIVS-TFYNENEALSAFSDKPENFHVAIVEVT-------TSNTDGSFK 81 (559)
Q Consensus 17 glrVLIVDDD----~--~~~~~L~~~L~~-~gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~-------MPd~mdG~e 81 (559)
|..++++|-. + .....+...+++ .+..+. .+.+.+++...... .+|++.+... ... ...++
T Consensus 88 Gad~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~~v~t~ee~~~a~~~---G~d~i~~~~~g~t~~~~~~~-~~~~~ 163 (221)
T PRK01130 88 GADIIALDATLRPRPDGETLAELVKRIKEYPGQLLMADCSTLEEGLAAQKL---GFDFIGTTLSGYTEETKKPE-EPDFA 163 (221)
T ss_pred CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEEEeCCCHHHHHHHHHc---CCCEEEcCCceeecCCCCCC-CcCHH
Confidence 4455665432 1 233445555555 566655 67788888654444 5888866421 112 23467
Q ss_pred HHHHcC---CCcEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008626 82 FLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (559)
Q Consensus 82 LLe~Ir---diPVImLSa~~d~e~v~kAi~~GA~DYLvK 117 (559)
+++.++ ++|||...+-.+.+.+.+++..||+.+++=
T Consensus 164 ~i~~i~~~~~iPvia~GGI~t~~~~~~~l~~GadgV~iG 202 (221)
T PRK01130 164 LLKELLKAVGCPVIAEGRINTPEQAKKALELGAHAVVVG 202 (221)
T ss_pred HHHHHHHhCCCCEEEECCCCCHHHHHHHHHCCCCEEEEc
Confidence 777775 699999888888999999999999998764
No 107
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=85.83 E-value=3.3 Score=42.62 Aligned_cols=109 Identities=16% Similarity=0.170 Sum_probs=70.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHh------hCCCEEE-EEC-CHHHHHHHhhcCCCCeeEEEEecCCC--C-C--CCH---HH
Q 008626 18 LRVLLLDQDSSAAAELKFKLE------AMDYIVS-TFY-NENEALSAFSDKPENFHVAIVEVTTS--N-T--DGS---FK 81 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~------~~gy~V~-ta~-~~~eAL~~Lre~~~~pDLVIvDv~MP--d-~--mdG---~e 81 (559)
+++=|+.|+...+-.+...++ +.||.|. .|. |...| +.|.+ -.+++| || . + .-| .+
T Consensus 94 iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~a-r~l~~--~G~~~v-----mPlg~pIGsg~Gi~~~~ 165 (248)
T cd04728 94 IKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLA-KRLED--AGCAAV-----MPLGSPIGSGQGLLNPY 165 (248)
T ss_pred EEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHH-HHHHH--cCCCEe-----CCCCcCCCCCCCCCCHH
Confidence 455566666555444444433 3499988 444 55555 44555 467887 55 1 0 112 45
Q ss_pred HHHHcC---CCcEEEEecCCCHHHHHHHHHcCCCEEEe-----CCCCHHHHHHHHHHHHHH
Q 008626 82 FLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLR-----KPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 82 LLe~Ir---diPVImLSa~~d~e~v~kAi~~GA~DYLv-----KPis~eeL~~iIq~vlrr 134 (559)
+++.++ ++|||+=..-...+.+.++++.||+++++ |--++..+.......+..
T Consensus 166 ~I~~I~e~~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~Av~a 226 (248)
T cd04728 166 NLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKLAVEA 226 (248)
T ss_pred HHHHHHHhCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHHHHHHHH
Confidence 666654 68999988899999999999999999976 444556666666555544
No 108
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=85.21 E-value=6.3 Score=38.69 Aligned_cols=95 Identities=15% Similarity=0.120 Sum_probs=65.4
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHhhCCCEEEEE---CCHHHHHHHhhcCCCCeeEEEEecCCCCCCC-HHHHHHHcC-
Q 008626 17 GLRVLLL----DQDSSAAAELKFKLEAMDYIVSTF---YNENEALSAFSDKPENFHVAIVEVTTSNTDG-SFKFLETAK- 87 (559)
Q Consensus 17 glrVLIV----DDD~~~~~~L~~~L~~~gy~V~ta---~~~~eAL~~Lre~~~~pDLVIvDv~MPd~md-G~eLLe~Ir- 87 (559)
.-+||+. |-+..=...+..+|+..||+|+.. ...++.++.+.+ ..||+|-+-+.|...+. ..++++.++
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~--~~~d~v~lS~~~~~~~~~~~~~i~~lr~ 159 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKE--HKPDILGLSALMTTTMGGMKEVIEALKE 159 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEeccccccHHHHHHHHHHHHH
Confidence 4578777 666666788899999999999843 367888899888 78999999887776222 234455554
Q ss_pred -----CCcEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008626 88 -----DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (559)
Q Consensus 88 -----diPVImLSa~~d~e~v~kAi~~GA~DYLv 116 (559)
+++| ++-+..-... -+-..||+.|-.
T Consensus 160 ~~~~~~~~i-~vGG~~~~~~--~~~~~GaD~~~~ 190 (201)
T cd02070 160 AGLRDKVKV-MVGGAPVNQE--FADEIGADGYAE 190 (201)
T ss_pred CCCCcCCeE-EEECCcCCHH--HHHHcCCcEEEC
Confidence 3444 4544333222 456679998875
No 109
>PRK00208 thiG thiazole synthase; Reviewed
Probab=84.92 E-value=7.2 Score=40.29 Aligned_cols=109 Identities=14% Similarity=0.129 Sum_probs=69.8
Q ss_pred cEEEEEeCCHHHHHHHHHHH------hhCCCEEE-EEC-CHHHHHHHhhcCCCCeeEEEEecCCC--C-C--CCH---HH
Q 008626 18 LRVLLLDQDSSAAAELKFKL------EAMDYIVS-TFY-NENEALSAFSDKPENFHVAIVEVTTS--N-T--DGS---FK 81 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L------~~~gy~V~-ta~-~~~eAL~~Lre~~~~pDLVIvDv~MP--d-~--mdG---~e 81 (559)
+++=|+.|+...+..+...+ -+.||.|. .|. |...| +.|.+ -.+++| || . + .-| .+
T Consensus 94 iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~a-k~l~~--~G~~~v-----mPlg~pIGsg~gi~~~~ 165 (250)
T PRK00208 94 IKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLA-KRLEE--AGCAAV-----MPLGAPIGSGLGLLNPY 165 (250)
T ss_pred EEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHH-HHHHH--cCCCEe-----CCCCcCCCCCCCCCCHH
Confidence 45556666654444333333 23499988 444 55555 44555 467887 55 1 0 112 35
Q ss_pred HHHHcC---CCcEEEEecCCCHHHHHHHHHcCCCEEEe-----CCCCHHHHHHHHHHHHHH
Q 008626 82 FLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLR-----KPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 82 LLe~Ir---diPVImLSa~~d~e~v~kAi~~GA~DYLv-----KPis~eeL~~iIq~vlrr 134 (559)
+++.++ ++|||+=..-...+.+.+++++||+++++ |--++..+.......+..
T Consensus 166 ~i~~i~e~~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~af~~Av~a 226 (250)
T PRK00208 166 NLRIIIEQADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAVEA 226 (250)
T ss_pred HHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHHHHHH
Confidence 555554 79999999999999999999999999976 444566666666665544
No 110
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=84.79 E-value=7 Score=41.95 Aligned_cols=109 Identities=13% Similarity=0.083 Sum_probs=67.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEE---------------EEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHH
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAMDYIV---------------STFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFK 81 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V---------------~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~e 81 (559)
.++++||.+.+.....|.++++..|... .......+....+.. .|++++--.+.+ ..|..
T Consensus 262 ~~~liivG~g~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~~----aDi~~v~~S~~e-~~g~~ 336 (425)
T PRK05749 262 NLLLILVPRHPERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYAI----ADIAFVGGSLVK-RGGHN 336 (425)
T ss_pred CcEEEEcCCChhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHHh----CCEEEECCCcCC-CCCCC
Confidence 4678888888765567777777766532 233333444444444 588776544434 45666
Q ss_pred HHHHcC-CCcEEEEecCCCHHHHHHHH-HcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008626 82 FLETAK-DLPTIITSNIHCLSTMMKCI-ALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 82 LLe~Ir-diPVImLSa~~d~e~v~kAi-~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
+++.+. .+|||+-........+.+.+ +. +++..+-+.++|.+.+..++.
T Consensus 337 ~lEAma~G~PVI~g~~~~~~~e~~~~~~~~---g~~~~~~d~~~La~~l~~ll~ 387 (425)
T PRK05749 337 PLEPAAFGVPVISGPHTFNFKEIFERLLQA---GAAIQVEDAEDLAKAVTYLLT 387 (425)
T ss_pred HHHHHHhCCCEEECCCccCHHHHHHHHHHC---CCeEEECCHHHHHHHHHHHhc
Confidence 777775 89998643323333343333 33 456668899999999988764
No 111
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=84.66 E-value=5.9 Score=39.67 Aligned_cols=99 Identities=12% Similarity=0.088 Sum_probs=67.2
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHhhCCCEEEEE---CCHHHHHHHhhcCCCCeeEEEEecCCCCCCCH-HHHHHHcC-
Q 008626 17 GLRVLLL----DQDSSAAAELKFKLEAMDYIVSTF---YNENEALSAFSDKPENFHVAIVEVTTSNTDGS-FKFLETAK- 87 (559)
Q Consensus 17 glrVLIV----DDD~~~~~~L~~~L~~~gy~V~ta---~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG-~eLLe~Ir- 87 (559)
.-+|++. |.+..=...+..+|+..||+|+.. ...++.++.+.+ .++|+|.+-..|+..+.. .++++.++
T Consensus 88 ~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~--~~~~~V~lS~~~~~~~~~~~~~i~~L~~ 165 (213)
T cd02069 88 KGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKE--HKADIIGLSGLLVPSLDEMVEVAEEMNR 165 (213)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEccchhccHHHHHHHHHHHHh
Confidence 3577777 667777778888899999999954 368888999988 889999999888762222 34555554
Q ss_pred ---CCcEEEEecCCCHHHHHH---HHHcCCCEEEeC
Q 008626 88 ---DLPTIITSNIHCLSTMMK---CIALGAVEFLRK 117 (559)
Q Consensus 88 ---diPVImLSa~~d~e~v~k---Ai~~GA~DYLvK 117 (559)
+++|++=-+.-+.+.... +-..||+.|-.-
T Consensus 166 ~~~~~~i~vGG~~~~~~~~~~~~~~~~~gad~y~~d 201 (213)
T cd02069 166 RGIKIPLLIGGAATSRKHTAVKIAPEYDGPVVYVKD 201 (213)
T ss_pred cCCCCeEEEEChhcCHHHHhhhhccccCCCceEecC
Confidence 566654443334333322 234699888753
No 112
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=83.65 E-value=7.6 Score=33.68 Aligned_cols=87 Identities=16% Similarity=0.178 Sum_probs=53.5
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEE---CCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHc-C--CCcEE
Q 008626 19 RVLLLDQDSSAAAELKFKLEAMDYIVSTF---YNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA-K--DLPTI 92 (559)
Q Consensus 19 rVLIVDDD~~~~~~L~~~L~~~gy~V~ta---~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~I-r--diPVI 92 (559)
+||||.........++..+++.|+..... ......-..|...-...|+||+=...-. -+....++.. + ++|++
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vs-H~~~~~vk~~akk~~ip~~ 79 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVS-HNAMWKVKKAAKKYGIPII 79 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcC-hHHHHHHHHHHHHcCCcEE
Confidence 58999998888899999999999998877 2222221122221124688887665544 3444444443 2 79998
Q ss_pred EEecCCCHHHHHHHH
Q 008626 93 ITSNIHCLSTMMKCI 107 (559)
Q Consensus 93 mLSa~~d~e~v~kAi 107 (559)
+.-.. ....+.+++
T Consensus 80 ~~~~~-~~~~l~~~l 93 (97)
T PF10087_consen 80 YSRSR-GVSSLERAL 93 (97)
T ss_pred EECCC-CHHHHHHHH
Confidence 76543 334444444
No 113
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=82.09 E-value=13 Score=40.62 Aligned_cols=106 Identities=17% Similarity=0.219 Sum_probs=69.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CCcEEEEe
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIITS 95 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-diPVImLS 95 (559)
.++++||.|.+. ...|+++.........-.-..++...++.. .|++|+=. ..+ .-|+.+++.+. .+|||+..
T Consensus 290 ~~~l~ivG~G~~-~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~----aDv~V~pS-~~E-~~g~~vlEAmA~G~PVI~s~ 362 (465)
T PLN02871 290 GARLAFVGDGPY-REELEKMFAGTPTVFTGMLQGDELSQAYAS----GDVFVMPS-ESE-TLGFVVLEAMASGVPVVAAR 362 (465)
T ss_pred CcEEEEEeCChH-HHHHHHHhccCCeEEeccCCHHHHHHHHHH----CCEEEECC-ccc-ccCcHHHHHHHcCCCEEEcC
Confidence 478888887654 445666555433222223344677777766 57777643 234 45777888875 89998544
Q ss_pred cCCCHHHHHHHHHc---CCCEEEeCCCCHHHHHHHHHHHHH
Q 008626 96 NIHCLSTMMKCIAL---GAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 96 a~~d~e~v~kAi~~---GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
..+- .+.+.. |-++++..|-+.++|.+.|..++.
T Consensus 363 ~gg~----~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 399 (465)
T PLN02871 363 AGGI----PDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLA 399 (465)
T ss_pred CCCc----HhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 3332 334555 899999999999999999988774
No 114
>PF07688 KaiA: KaiA domain; InterPro: IPR011648 KaiA is a component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction. In the complex, KaiA enhances the phosphorylation status of kaiC. In contrast, the presence of kaiB in the complex decreases the phosphorylation status of kaiC, suggesting that kaiB acts by antagonising the interaction between kaiA and kaiC. The activity of KaiA activates kaiBC expression, while KaiC represses it. The overall fold of the KaiA monomer is that of a four-helix bundle, which forms a dimer in the known structure []. KaiA functions as a homodimer. Each monomer is composed of three functional domains: the N-terminal amplitude-amplifier domain, the central period-adjuster domain and the C-termianl clock-oscillator domain. The N-terminal domain of KaiA, from cyanobacteria, acts as a psuedo-receiver domain, but lacks the conserved aspartyl residue required for phosphotransfer in response regulators []. The C-terminal domain is responsible for dimer formation, binding to KaiC, enhancing KaiC phosphorylation and generating the circadian oscillations []. The KaiA protein from Anabaena sp. (strain PCC 7120) lacks the N-terminal CheY-like domain.; GO: 0006468 protein phosphorylation, 0007623 circadian rhythm; PDB: 1V2Z_A 1Q6B_B 1Q6A_A 1SV1_B 1SUY_B 1R5Q_A 1M2E_A 1R8J_B 1M2F_A.
Probab=81.84 E-value=5.9 Score=41.13 Aligned_cols=117 Identities=18% Similarity=0.163 Sum_probs=71.1
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHc-CCCcEEEEecC
Q 008626 19 RVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA-KDLPTIITSNI 97 (559)
Q Consensus 19 rVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~I-rdiPVImLSa~ 97 (559)
.|-+.-.++.+.+.+..+|...-|.++.+.+.++.++.+.++++.+|++|+...... ...++-|..- .-+|+|++...
T Consensus 2 sI~~~v~s~~Laqsl~~~L~~dRY~l~~~~s~~ef~~~le~~~e~iDCLvle~~~~~-~~~~~~L~e~g~LLPaVil~~~ 80 (283)
T PF07688_consen 2 SICLLVSSPALAQSLRQWLPGDRYELVQVDSPEEFLEFLEQHREQIDCLVLEQSPLL-PPLFNQLYEQGILLPAVILGSS 80 (283)
T ss_dssp EEEEE-S-HHHHHHHHHHT-STTEEEEEESSCHHHHHHHCCTTTT-SEEEEETTSTT-HHHHHHHHHCT----EEEES--
T ss_pred eEEEEeCCHHHHHHHHHHcccCceEEEEcCcHHHHHHHHHhchhccCEEEEecCCCc-HHHHHHHHHcCccccEEEEecC
Confidence 456666788899999999998889999999999999999987789999999987655 3333332222 25899998663
Q ss_pred CCHHHHHHHHHcCCCEE-----EeCCCCHHHHHHHHHHHHHHHHhcC
Q 008626 98 HCLSTMMKCIALGAVEF-----LRKPLSEDKLRNLWQHVVHKAFNAG 139 (559)
Q Consensus 98 ~d~e~v~kAi~~GA~DY-----LvKPis~eeL~~iIq~vlrr~~~~~ 139 (559)
...... -..|..+| -+..-..++|-..|..++.+..+.+
T Consensus 81 ~s~~~~---~~~~~~~YH~aEV~L~~~qL~ql~~~ID~AIsrFL~l~ 124 (283)
T PF07688_consen 81 ESASTT---SESGTVLYHSAEVHLPIDQLEQLSYNIDQAISRFLRLG 124 (283)
T ss_dssp -S--TT---S--SSGSSBTT-EEE-CCGTTCHHHHHHHHHHHHHHH-
T ss_pred cccccC---CCCCceeeehHheEccHHHHHHHHHHHHHHHHHHHhhC
Confidence 221110 11333333 3444456777777777777665543
No 115
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=81.62 E-value=15 Score=36.40 Aligned_cols=81 Identities=20% Similarity=0.283 Sum_probs=54.6
Q ss_pred HHHHHhhCC-CEEE-EECCHHHHHHHhhcCCCCeeEEEEecC-C------CCCCCHHHHHHHcC---CCcEEEEecCCCH
Q 008626 33 LKFKLEAMD-YIVS-TFYNENEALSAFSDKPENFHVAIVEVT-T------SNTDGSFKFLETAK---DLPTIITSNIHCL 100 (559)
Q Consensus 33 L~~~L~~~g-y~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~-M------Pd~mdG~eLLe~Ir---diPVImLSa~~d~ 100 (559)
+.+.+++.+ ..+. .+.+.+++...... .+|++.+... . .. ...+++++.++ ++|||....-.+.
T Consensus 114 ~i~~~~~~g~~~iiv~v~t~~ea~~a~~~---G~d~i~~~~~g~t~~~~~~~-~~~~~~l~~i~~~~~ipvia~GGI~~~ 189 (219)
T cd04729 114 LIKRIHEEYNCLLMADISTLEEALNAAKL---GFDIIGTTLSGYTEETAKTE-DPDFELLKELRKALGIPVIAEGRINSP 189 (219)
T ss_pred HHHHHHHHhCCeEEEECCCHHHHHHHHHc---CCCEEEccCccccccccCCC-CCCHHHHHHHHHhcCCCEEEeCCCCCH
Confidence 333333333 5443 66788888665554 5888765321 1 11 23467777775 6999998888899
Q ss_pred HHHHHHHHcCCCEEEeC
Q 008626 101 STMMKCIALGAVEFLRK 117 (559)
Q Consensus 101 e~v~kAi~~GA~DYLvK 117 (559)
+.+.+++..||+.+++-
T Consensus 190 ~~~~~~l~~GadgV~vG 206 (219)
T cd04729 190 EQAAKALELGADAVVVG 206 (219)
T ss_pred HHHHHHHHCCCCEEEEc
Confidence 99999999999998864
No 116
>PRK15320 transcriptional activator SprB; Provisional
Probab=81.03 E-value=3.8 Score=41.24 Aligned_cols=140 Identities=15% Similarity=0.220 Sum_probs=88.5
Q ss_pred EEEEEeCCHHHHHHHHHHHhhC--CCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHH---HHHHHcCCCcEEE
Q 008626 19 RVLLLDQDSSAAAELKFKLEAM--DYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSF---KFLETAKDLPTII 93 (559)
Q Consensus 19 rVLIVDDD~~~~~~L~~~L~~~--gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~---eLLe~IrdiPVIm 93 (559)
.|+|-.+.=...-.+..++++. +..|.+|.+....|..|+. .||.+++=.--|. ..-+ .+...+.+-||++
T Consensus 3 ~viiyg~~w~~~~a~~~~~~~~~p~~~~~t~~~l~~ll~~l~~---~p~a~lil~l~p~-eh~~lf~~l~~~l~~~~v~v 78 (251)
T PRK15320 3 NVIIYGINWTNCYALQSIFKQKYPEKCVKTCNSLTALLHSLSD---MPDAGLILALNPH-EHVYLFHALLTRLQNRKVLV 78 (251)
T ss_pred cEEEEeccchHHHHHHHHHHHHCCccchhhhhhHHHHHHHHhh---CCCceEEEeeCch-hHHHHHHHHHHHcCCCceEE
Confidence 5778888877777889999875 7788899998888888877 4665555444455 3332 2344456899999
Q ss_pred EecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHH-------------HHHHHH----------HhcCCCC--------
Q 008626 94 TSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQ-------------HVVHKA----------FNAGGSA-------- 142 (559)
Q Consensus 94 LSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq-------------~vlrr~----------~~~~~~~-------- 142 (559)
++..--.....-.--.|.-+|++| +||..+|+ +...+- .+.....
T Consensus 79 v~d~l~~~dr~vl~~~g~~~~~l~----~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (251)
T PRK15320 79 VADRLYYIDRCVLQYFGVMDYVLK----DELSCAIRSEREKLRLPEAWLRFCHRPQKKTVAATYAFNAGETPEEVLFNIN 154 (251)
T ss_pred EecceeehhhhhhhhhcchhHHHH----HHHHHHhcccccccCCcHHHHHHhcCccccccceeeeccCCCChHHHhhhcc
Confidence 987543222222233578888776 44444443 211110 0000000
Q ss_pred ------ccCCCcHHHHHHHHHHhhhhcccc
Q 008626 143 ------LSDSLKPVKESVVSMLHLKLENGE 166 (559)
Q Consensus 143 ------~s~~Lt~re~eVl~li~~~~~~~e 166 (559)
.-..|+.+|.+|+.++..+.++.+
T Consensus 155 ~~~~~~~~~~LSdREIEVL~LLAkG~SNKE 184 (251)
T PRK15320 155 QYAWWNLPPGVTQAKYALLILLSSGHPAIE 184 (251)
T ss_pred ceeeecCCCCCCHHHHHHHHHHHcCCCHHH
Confidence 024799999999999999887766
No 117
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=80.45 E-value=10 Score=39.29 Aligned_cols=106 Identities=15% Similarity=0.156 Sum_probs=69.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCC--EEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CCcEEE
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAMDY--IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTII 93 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy--~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-diPVIm 93 (559)
.++++|+.+.+. ...+.+.+...+. .|.......+..+++.. .|++|+=- ..+ .-|..+++.+. .+|||+
T Consensus 229 ~~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----adi~v~pS-~~E-g~~~~~lEAma~G~Pvv~ 301 (374)
T TIGR03088 229 RLRLVIVGDGPA-RGACEQMVRAAGLAHLVWLPGERDDVPALMQA----LDLFVLPS-LAE-GISNTILEAMASGLPVIA 301 (374)
T ss_pred ceEEEEecCCch-HHHHHHHHHHcCCcceEEEcCCcCCHHHHHHh----cCEEEecc-ccc-cCchHHHHHHHcCCCEEE
Confidence 467888876643 3556777766553 34433344455555554 57766532 234 45778888875 899986
Q ss_pred EecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008626 94 TSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 94 LSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
|.... ..+.+..|.++++..+-+.++|.+.+..++.
T Consensus 302 -s~~~g---~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~ 337 (374)
T TIGR03088 302 -TAVGG---NPELVQHGVTGALVPPGDAVALARALQPYVS 337 (374)
T ss_pred -cCCCC---cHHHhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 43333 3345677889999999999999999988764
No 118
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=80.16 E-value=25 Score=34.30 Aligned_cols=107 Identities=11% Similarity=0.092 Sum_probs=68.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCC--EEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CCcEEE
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAMDY--IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTII 93 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy--~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-diPVIm 93 (559)
.++++|+.+... ...+...+...+. .|......++....+.. .|++|.-... + .-|..+++.+. .+|||+
T Consensus 209 ~~~l~i~G~~~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~i~ps~~-e-~~~~~~~Ea~a~G~Pvi~ 281 (348)
T cd03820 209 DWKLRIVGDGPE-REALEALIKELGLEDRVILLGFTKNIEEYYAK----ASIFVLTSRF-E-GFPMVLLEAMAFGLPVIS 281 (348)
T ss_pred CeEEEEEeCCCC-HHHHHHHHHHcCCCCeEEEcCCcchHHHHHHh----CCEEEeCccc-c-ccCHHHHHHHHcCCCEEE
Confidence 467777775433 2334444554443 34444444555555555 5888876554 3 45778888875 899886
Q ss_pred EecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008626 94 TSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 94 LSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
.......+ ..+..|..+++.++.+.++|.+.+..++.
T Consensus 282 ~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~i~~ll~ 318 (348)
T cd03820 282 FDCPTGPS---EIIEDGVNGLLVPNGDVEALAEALLRLME 318 (348)
T ss_pred ecCCCchH---hhhccCcceEEeCCCCHHHHHHHHHHHHc
Confidence 43333322 33556678999999999999999988864
No 119
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=79.82 E-value=25 Score=34.93 Aligned_cols=74 Identities=16% Similarity=0.236 Sum_probs=52.5
Q ss_pred HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Q 008626 51 NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQ 129 (559)
Q Consensus 51 ~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq 129 (559)
++..+.+.. .|++|+-....+ .-|..+++.+. .+|||+. .... ..+.+..|.++++.++-+.++|.+.+.
T Consensus 254 ~~~~~~~~~----ad~~i~ps~~~e-~~~~~~~Ea~a~G~Pvi~~-~~~~---~~e~i~~~~~g~~~~~~d~~~l~~~i~ 324 (359)
T cd03823 254 EEIDDFYAE----IDVLVVPSIWPE-NFPLVIREALAAGVPVIAS-DIGG---MAELVRDGVNGLLFPPGDAEDLAAALE 324 (359)
T ss_pred HHHHHHHHh----CCEEEEcCcccC-CCChHHHHHHHCCCCEEEC-CCCC---HHHHhcCCCcEEEECCCCHHHHHHHHH
Confidence 555555554 477776443344 56778888886 8998853 3332 345567788999999999999999998
Q ss_pred HHHH
Q 008626 130 HVVH 133 (559)
Q Consensus 130 ~vlr 133 (559)
.++.
T Consensus 325 ~l~~ 328 (359)
T cd03823 325 RLID 328 (359)
T ss_pred HHHh
Confidence 8875
No 120
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=79.65 E-value=29 Score=33.51 Aligned_cols=72 Identities=15% Similarity=0.131 Sum_probs=49.6
Q ss_pred CCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCC-------CCHHHHHHHcC---C-CcEEEEecCCCHHHHHHHHH
Q 008626 41 DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNT-------DGSFKFLETAK---D-LPTIITSNIHCLSTMMKCIA 108 (559)
Q Consensus 41 gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~-------mdG~eLLe~Ir---d-iPVImLSa~~d~e~v~kAi~ 108 (559)
+..+. .+.+..++.+.... ..|+|.+.--.|.. ..|++.++.++ . +||++..+- +.+.+.+++.
T Consensus 104 ~~~~g~~~~t~~e~~~a~~~---gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI-~~~~i~~~~~ 179 (212)
T PRK00043 104 DAIIGLSTHTLEEAAAALAA---GADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIGGI-TPENAPEVLE 179 (212)
T ss_pred CCEEEEeCCCHHHHHHHhHc---CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHH
Confidence 34444 56677777766544 58999876555531 12466676663 4 898877665 5788999999
Q ss_pred cCCCEEEe
Q 008626 109 LGAVEFLR 116 (559)
Q Consensus 109 ~GA~DYLv 116 (559)
+||+++..
T Consensus 180 ~Ga~gv~~ 187 (212)
T PRK00043 180 AGADGVAV 187 (212)
T ss_pred cCCCEEEE
Confidence 99999985
No 121
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=79.29 E-value=32 Score=36.61 Aligned_cols=108 Identities=7% Similarity=0.137 Sum_probs=67.5
Q ss_pred CcEEEEEeCCH--------HHHHHHHHHHhhCCCEEEEEC--CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHc
Q 008626 17 GLRVLLLDQDS--------SAAAELKFKLEAMDYIVSTFY--NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA 86 (559)
Q Consensus 17 glrVLIVDDD~--------~~~~~L~~~L~~~gy~V~ta~--~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~I 86 (559)
.++++||.+.. ...+.+..+....+-.|.... +.++....+.. .|++++-....+ .-|.-+++.+
T Consensus 224 ~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~~v~~~G~~~~~~l~~~~~~----aDv~v~pS~~~E-~f~~~~lEAm 298 (380)
T PRK15484 224 NLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIGDRCIMLGGQPPEKMHNYYPL----ADLVVVPSQVEE-AFCMVAVEAM 298 (380)
T ss_pred CeEEEEEeCCccccccchhHHHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHh----CCEEEeCCCCcc-ccccHHHHHH
Confidence 36777776532 233344444444444454333 34566666655 588876443334 4466778877
Q ss_pred C-CCcEEEEecCCCHHHHHHHHHcCCCEE-EeCCCCHHHHHHHHHHHHH
Q 008626 87 K-DLPTIITSNIHCLSTMMKCIALGAVEF-LRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 87 r-diPVImLSa~~d~e~v~kAi~~GA~DY-LvKPis~eeL~~iIq~vlr 133 (559)
. .+|||.... +. +.+.+..|.++| +..|.+.++|.+.+..++.
T Consensus 299 a~G~PVI~s~~-gg---~~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~ 343 (380)
T PRK15484 299 AAGKPVLASTK-GG---ITEFVLEGITGYHLAEPMTSDSIISDINRTLA 343 (380)
T ss_pred HcCCCEEEeCC-CC---cHhhcccCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 5 899986443 32 234467788999 5678999999999988774
No 122
>PRK12704 phosphodiesterase; Provisional
Probab=78.14 E-value=4.4 Score=45.87 Aligned_cols=48 Identities=8% Similarity=0.006 Sum_probs=41.8
Q ss_pred CcEEEEecCCCHH--HHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008626 89 LPTIITSNIHCLS--TMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 136 (559)
Q Consensus 89 iPVImLSa~~d~e--~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~ 136 (559)
.-+|++|+.+... ....+++.|+.|+.+||++.+++...++.-+....
T Consensus 250 p~~v~ls~~~~~rre~a~~~l~~l~~dg~i~P~~iee~~~~~~~~~~~~~ 299 (520)
T PRK12704 250 PEAVILSGFDPIRREIARLALEKLVQDGRIHPARIEEMVEKARKEVDEEI 299 (520)
T ss_pred CCeEEEecCChhhHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHHH
Confidence 5688899988776 88999999999999999999999999988776543
No 123
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=77.41 E-value=35 Score=34.44 Aligned_cols=107 Identities=13% Similarity=0.157 Sum_probs=69.1
Q ss_pred CcEEEEEeCCHH---HHHHHHHHHhhCCC--EEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CCc
Q 008626 17 GLRVLLLDQDSS---AAAELKFKLEAMDY--IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLP 90 (559)
Q Consensus 17 glrVLIVDDD~~---~~~~L~~~L~~~gy--~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-diP 90 (559)
.++++|+.+... ..+.+...+...+. .|......++....+.. .|++|+=..-.+ .-|..+++.+. .+|
T Consensus 216 ~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~----ad~~i~ps~~~e-~~~~~l~EA~a~G~P 290 (355)
T cd03819 216 DVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYAL----ADIVVSASTEPE-AFGRTAVEAQAMGRP 290 (355)
T ss_pred CeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHHHh----CCEEEecCCCCC-CCchHHHHHHhcCCC
Confidence 467777765532 33444555555443 35555544555555555 577776443445 56788888886 899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 008626 91 TIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVV 132 (559)
Q Consensus 91 VImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vl 132 (559)
||+. .... ..+.+..|.++++..+-+.++|.+.+..++
T Consensus 291 vI~~-~~~~---~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~ 328 (355)
T cd03819 291 VIAS-DHGG---ARETVRPGETGLLVPPGDAEALAQALDQIL 328 (355)
T ss_pred EEEc-CCCC---cHHHHhCCCceEEeCCCCHHHHHHHHHHHH
Confidence 9854 3333 244567788999999999999999986444
No 124
>PRK14098 glycogen synthase; Provisional
Probab=77.27 E-value=23 Score=39.49 Aligned_cols=111 Identities=7% Similarity=0.009 Sum_probs=69.9
Q ss_pred CcEEEEEeCCH-HHHHHHHHHHhhCCCEEE--EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CCcEE
Q 008626 17 GLRVLLLDQDS-SAAAELKFKLEAMDYIVS--TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTI 92 (559)
Q Consensus 17 glrVLIVDDD~-~~~~~L~~~L~~~gy~V~--ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-diPVI 92 (559)
..+++|+.+-+ .....|+++..+.+-.|. ..-+..++..++.. .|++|+=- ..+ .-|+..++.++ .+|+|
T Consensus 336 ~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~a~----aDi~l~PS-~~E-~~Gl~~lEAma~G~ppV 409 (489)
T PRK14098 336 DIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAIAG----LDMLLMPG-KIE-SCGMLQMFAMSYGTIPV 409 (489)
T ss_pred CcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHHHh----CCEEEeCC-CCC-CchHHHHHHHhCCCCeE
Confidence 46778887643 345566666665442333 23344445555544 58887643 234 45788888776 66776
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008626 93 ITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 93 mLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
+....+-.+.+......|.++|+..+.+.++|.+++.+++.
T Consensus 410 v~~~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~ 450 (489)
T PRK14098 410 AYAGGGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEALA 450 (489)
T ss_pred EecCCCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHHHH
Confidence 65444444444443445788999999999999999887664
No 125
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=77.05 E-value=41 Score=34.61 Aligned_cols=88 Identities=16% Similarity=0.048 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEec-CCCCC-CCHHHHHHH----cC-CCcEEEEecC
Q 008626 26 DSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEV-TTSNT-DGSFKFLET----AK-DLPTIITSNI 97 (559)
Q Consensus 26 D~~~~~~L~~~L~~~gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv-~MPd~-mdG~eLLe~----Ir-diPVImLSa~ 97 (559)
+...++.+.......|..+. .+.+.+|+...+.. .+|+|-+.- ++... .+ ++.... +. +.++|..++-
T Consensus 145 ~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~---gadiIgin~rdl~~~~~d-~~~~~~l~~~~p~~~~vIaegGI 220 (260)
T PRK00278 145 DDEQLKELLDYAHSLGLDVLVEVHDEEELERALKL---GAPLIGINNRNLKTFEVD-LETTERLAPLIPSDRLVVSESGI 220 (260)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHc---CCCEEEECCCCcccccCC-HHHHHHHHHhCCCCCEEEEEeCC
Confidence 34455555555566788755 78888888665543 578776542 11110 12 333333 33 3588999999
Q ss_pred CCHHHHHHHHHcCCCEEEeC
Q 008626 98 HCLSTMMKCIALGAVEFLRK 117 (559)
Q Consensus 98 ~d~e~v~kAi~~GA~DYLvK 117 (559)
.+.+.+.+++.+||+.+++-
T Consensus 221 ~t~ed~~~~~~~Gad~vlVG 240 (260)
T PRK00278 221 FTPEDLKRLAKAGADAVLVG 240 (260)
T ss_pred CCHHHHHHHHHcCCCEEEEC
Confidence 99999999999999998763
No 126
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=76.57 E-value=20 Score=37.77 Aligned_cols=82 Identities=17% Similarity=0.060 Sum_probs=60.0
Q ss_pred HHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCC----CCHHHHHHHcC---CCcEEEEecCCCHHHHH
Q 008626 33 LKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNT----DGSFKFLETAK---DLPTIITSNIHCLSTMM 104 (559)
Q Consensus 33 L~~~L~~~gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~----mdG~eLLe~Ir---diPVImLSa~~d~e~v~ 104 (559)
+...|+..|..|. .+.+.++|...... ..|.|++.-.-.+. ..-+.++..++ ++|||+--.-.+.+.+.
T Consensus 101 ~i~~lk~~g~~v~~~v~s~~~a~~a~~~---GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iPviaaGGI~~~~~~~ 177 (307)
T TIGR03151 101 YIPRLKENGVKVIPVVASVALAKRMEKA---GADAVIAEGMESGGHIGELTTMALVPQVVDAVSIPVIAAGGIADGRGMA 177 (307)
T ss_pred HHHHHHHcCCEEEEEcCCHHHHHHHHHc---CCCEEEEECcccCCCCCCCcHHHHHHHHHHHhCCCEEEECCCCCHHHHH
Confidence 4556666677665 77888888666554 58988885532220 22477777775 69999888888999999
Q ss_pred HHHHcCCCEEEeC
Q 008626 105 KCIALGAVEFLRK 117 (559)
Q Consensus 105 kAi~~GA~DYLvK 117 (559)
+++..||++..+=
T Consensus 178 ~al~~GA~gV~iG 190 (307)
T TIGR03151 178 AAFALGAEAVQMG 190 (307)
T ss_pred HHHHcCCCEeecc
Confidence 9999999998864
No 127
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=76.22 E-value=3.8 Score=40.73 Aligned_cols=76 Identities=14% Similarity=0.170 Sum_probs=54.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCC--CC-CCCHHHHHHHcC-CCcEE
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTT--SN-TDGSFKFLETAK-DLPTI 92 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~M--Pd-~mdG~eLLe~Ir-diPVI 92 (559)
+++||+||.....--.|..+|+..|++|+.+.+....+..++. ..||.||+--.- |. .....++++++. ++||+
T Consensus 1 ~~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~--~~pd~iviSPGPG~P~d~G~~~~~i~~~~~~~PiL 78 (191)
T COG0512 1 MMMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEA--LKPDAIVISPGPGTPKDAGISLELIRRFAGRIPIL 78 (191)
T ss_pred CceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHhh--cCCCEEEEcCCCCChHHcchHHHHHHHhcCCCCEE
Confidence 4689999999999999999999999988866665433445555 568999885432 21 012467777764 68987
Q ss_pred EE
Q 008626 93 IT 94 (559)
Q Consensus 93 mL 94 (559)
-+
T Consensus 79 GV 80 (191)
T COG0512 79 GV 80 (191)
T ss_pred EE
Confidence 55
No 128
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=75.75 E-value=13 Score=37.06 Aligned_cols=61 Identities=10% Similarity=0.196 Sum_probs=48.7
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHhhCCC--EEE-EECCHHHHHHHhhcCC--CCeeEEEEecCC
Q 008626 13 DFPKGLRVLLLDQDSSAAAELKFKLEAMDY--IVS-TFYNENEALSAFSDKP--ENFHVAIVEVTT 73 (559)
Q Consensus 13 ~~p~glrVLIVDDD~~~~~~L~~~L~~~gy--~V~-ta~~~~eAL~~Lre~~--~~pDLVIvDv~M 73 (559)
.+|.+-+|.-||-|+...+..+..+++.|+ .|. ...++.+.|..+.... ..||+|++|..=
T Consensus 66 ~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~K 131 (205)
T PF01596_consen 66 ALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDADK 131 (205)
T ss_dssp TSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEESTG
T ss_pred hhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEcccc
Confidence 456667999999999999999999999886 344 6788999998876532 369999999953
No 129
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=75.67 E-value=30 Score=35.42 Aligned_cols=105 Identities=11% Similarity=0.126 Sum_probs=68.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCC--EEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CCcEEEE
Q 008626 18 LRVLLLDQDSSAAAELKFKLEAMDY--IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIIT 94 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy--~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-diPVImL 94 (559)
.+++|+.+.+. ...+..++...+. .|.......+....+.. .|++|+=.. .+ .-|..+++.+. .+|||..
T Consensus 228 ~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----~d~~v~ps~-~E-~~~~~~~EAma~g~PvI~s 300 (371)
T cd04962 228 ARLLLVGDGPE-RSPAERLARELGLQDDVLFLGKQDHVEELLSI----ADLFLLPSE-KE-SFGLAALEAMACGVPVVAS 300 (371)
T ss_pred ceEEEEcCCcC-HHHHHHHHHHcCCCceEEEecCcccHHHHHHh----cCEEEeCCC-cC-CCccHHHHHHHcCCCEEEe
Confidence 56777765543 3445555555543 35544444444444444 577776543 34 45778888875 8998864
Q ss_pred ecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008626 95 SNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 95 Sa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
.... ..+.+..|.++|+..+-+.++|.+.+..++.
T Consensus 301 -~~~~---~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~ 335 (371)
T cd04962 301 -NAGG---IPEVVKHGETGFLVDVGDVEAMAEYALSLLE 335 (371)
T ss_pred -CCCC---chhhhcCCCceEEcCCCCHHHHHHHHHHHHh
Confidence 3332 4456788899999999999999998887764
No 130
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=75.12 E-value=55 Score=28.38 Aligned_cols=104 Identities=18% Similarity=0.179 Sum_probs=61.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhh-CCCEEE-EECCHHHHHHH-hhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CCcEEE
Q 008626 18 LRVLLLDQDSSAAAELKFKLEA-MDYIVS-TFYNENEALSA-FSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTII 93 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~-~gy~V~-ta~~~~eAL~~-Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-diPVIm 93 (559)
+||.||.--..-...+..++.. .+++++ .+....+..+. .+. ..+. +.. +--++++.-. |+-+|.
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~--~~~~-~~~--------~~~~ll~~~~~D~V~I~ 69 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEK--YGIP-VYT--------DLEELLADEDVDAVIIA 69 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH--TTSE-EES--------SHHHHHHHTTESEEEEE
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHH--hccc-chh--------HHHHHHHhhcCCEEEEe
Confidence 4677777766666666666665 356665 44433333333 233 2233 222 2333444332 443443
Q ss_pred EecCCCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHH
Q 008626 94 TSNIHCLSTMMKCIALGAVEFLRKPL--SEDKLRNLWQHVV 132 (559)
Q Consensus 94 LSa~~d~e~v~kAi~~GA~DYLvKPi--s~eeL~~iIq~vl 132 (559)
.....-.+.+..+++.|..=|+-||+ +.+++...++.+-
T Consensus 70 tp~~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~ 110 (120)
T PF01408_consen 70 TPPSSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAK 110 (120)
T ss_dssp SSGGGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHH
Confidence 33445667889999999999999999 7888887766544
No 131
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=75.04 E-value=29 Score=36.06 Aligned_cols=96 Identities=7% Similarity=0.050 Sum_probs=62.6
Q ss_pred HHHHHHhhCCC--EEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-----CCcEEEEecCCCHHHHH
Q 008626 32 ELKFKLEAMDY--IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-----DLPTIITSNIHCLSTMM 104 (559)
Q Consensus 32 ~L~~~L~~~gy--~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-----diPVImLSa~~d~e~v~ 104 (559)
.|++.|..-.. -.......-.+.+++.. ..||.|++|..-.. .+--++...++ .+..|+=....+...+.
T Consensus 8 ~lk~~L~~G~~~~G~~~~~~sp~~~E~~a~--~GfD~v~iD~EHg~-~~~~~l~~~i~a~~~~g~~~lVRvp~~~~~~i~ 84 (267)
T PRK10128 8 PFKEGLRKGEVQIGLWLSSTTSYMAEIAAT--SGYDWLLIDGEHAP-NTIQDLYHQLQAIAPYASQPVIRPVEGSKPLIK 84 (267)
T ss_pred HHHHHHHcCCceEEEEecCCCcHHHHHHHH--cCCCEEEEccccCC-CCHHHHHHHHHHHHhcCCCeEEECCCCCHHHHH
Confidence 46666665322 22222333455666666 56999999998777 66555554443 45555555667888999
Q ss_pred HHHHcCCCEEEeCCC-CHHHHHHHHHH
Q 008626 105 KCIALGAVEFLRKPL-SEDKLRNLWQH 130 (559)
Q Consensus 105 kAi~~GA~DYLvKPi-s~eeL~~iIq~ 130 (559)
+++..||.+.++-=+ +.++.+.+++.
T Consensus 85 r~LD~GA~GIivP~V~saeeA~~~V~a 111 (267)
T PRK10128 85 QVLDIGAQTLLIPMVDTAEQARQVVSA 111 (267)
T ss_pred HHhCCCCCeeEecCcCCHHHHHHHHHh
Confidence 999999999998666 45666655443
No 132
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=74.76 E-value=13 Score=36.55 Aligned_cols=94 Identities=11% Similarity=-0.037 Sum_probs=62.1
Q ss_pred cEEEEE----eCCHHHHHHHHHHHhhCCCEEEE---ECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCH-HHHHHHcC--
Q 008626 18 LRVLLL----DQDSSAAAELKFKLEAMDYIVST---FYNENEALSAFSDKPENFHVAIVEVTTSNTDGS-FKFLETAK-- 87 (559)
Q Consensus 18 lrVLIV----DDD~~~~~~L~~~L~~~gy~V~t---a~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG-~eLLe~Ir-- 87 (559)
-+|++. |.+..=...+..+|+..||+|+. -...++.++.+.+ ..||+|.+-+.|...+.. .++++.++
T Consensus 85 ~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~--~~pd~v~lS~~~~~~~~~~~~~i~~l~~~ 162 (197)
T TIGR02370 85 GKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKK--EKPLMLTGSALMTTTMYGQKDINDKLKEE 162 (197)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHH--cCCCEEEEccccccCHHHHHHHHHHHHHc
Confidence 366654 45555567778888899999994 4477888999988 889999999988762222 33445554
Q ss_pred ----CCcEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008626 88 ----DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (559)
Q Consensus 88 ----diPVImLSa~~d~e~v~kAi~~GA~DYLv 116 (559)
+++ |++-+..-.. .-+-+.||+.|-.
T Consensus 163 ~~~~~v~-i~vGG~~~~~--~~~~~~gad~~~~ 192 (197)
T TIGR02370 163 GYRDSVK-FMVGGAPVTQ--DWADKIGADVYGE 192 (197)
T ss_pred CCCCCCE-EEEEChhcCH--HHHHHhCCcEEeC
Confidence 244 4455443322 2356779998864
No 133
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=74.13 E-value=47 Score=35.87 Aligned_cols=107 Identities=13% Similarity=0.134 Sum_probs=72.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCC--EEEEEC--CHHHHHHHhhcCCCCeeEEEEecCCC-----CCCCHHHHHHHcC
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAMDY--IVSTFY--NENEALSAFSDKPENFHVAIVEVTTS-----NTDGSFKFLETAK 87 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy--~V~ta~--~~~eAL~~Lre~~~~pDLVIvDv~MP-----d~mdG~eLLe~Ir 87 (559)
.++++||.+.+. ...++++++..|. .|.... +.++..+.+.. .|++++=.... + .-+..+++.+.
T Consensus 253 ~~~l~ivG~G~~-~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~----aDv~v~pS~~~~~g~~E-g~p~~llEAma 326 (406)
T PRK15427 253 AFRYRILGIGPW-ERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDD----ADVFLLPSVTGADGDME-GIPVALMEAMA 326 (406)
T ss_pred CEEEEEEECchh-HHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHh----CCEEEECCccCCCCCcc-CccHHHHHHHh
Confidence 367788887654 4567777776654 244322 45666667666 58777643221 2 23467788775
Q ss_pred -CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008626 88 -DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 88 -diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
.+|||.. ..+. +.+.+..|.+++++.|-+.++|.+.|..++.
T Consensus 327 ~G~PVI~t-~~~g---~~E~v~~~~~G~lv~~~d~~~la~ai~~l~~ 369 (406)
T PRK15427 327 VGIPVVST-LHSG---IPELVEADKSGWLVPENDAQALAQRLAAFSQ 369 (406)
T ss_pred CCCCEEEe-CCCC---chhhhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 8999864 3332 3456788999999999999999999988775
No 134
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=73.85 E-value=30 Score=35.68 Aligned_cols=97 Identities=9% Similarity=0.093 Sum_probs=63.1
Q ss_pred HHHHHHHhhCCC--EEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-----CCcEEEEecCCCHHHH
Q 008626 31 AELKFKLEAMDY--IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-----DLPTIITSNIHCLSTM 103 (559)
Q Consensus 31 ~~L~~~L~~~gy--~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-----diPVImLSa~~d~e~v 103 (559)
..|++.|..-.. -+........+.+++.. ..||.|++|..-.. .+--++...++ .++.|+=....+...+
T Consensus 8 n~lk~~l~~g~~~~g~~~~~~sp~~~e~~a~--~G~D~v~iD~EHg~-~~~~~~~~~i~a~~~~g~~~lVRvp~~~~~~i 84 (256)
T PRK10558 8 NKFKAALAAKQVQIGCWSALANPITTEVLGL--AGFDWLVLDGEHAP-NDVSTFIPQLMALKGSASAPVVRVPTNEPVII 84 (256)
T ss_pred HHHHHHHHcCCceEEEEEcCCCcHHHHHHHh--cCCCEEEEccccCC-CCHHHHHHHHHHHhhcCCCcEEECCCCCHHHH
Confidence 346667765322 22222333456666666 56999999998777 66655554443 4555555566678899
Q ss_pred HHHHHcCCCEEEeCCC-CHHHHHHHHHH
Q 008626 104 MKCIALGAVEFLRKPL-SEDKLRNLWQH 130 (559)
Q Consensus 104 ~kAi~~GA~DYLvKPi-s~eeL~~iIq~ 130 (559)
.+++..||.++++-=+ +.++...+++.
T Consensus 85 ~r~LD~Ga~giivP~v~tae~a~~~v~a 112 (256)
T PRK10558 85 KRLLDIGFYNFLIPFVETAEEARRAVAS 112 (256)
T ss_pred HHHhCCCCCeeeecCcCCHHHHHHHHHH
Confidence 9999999999988555 55666665443
No 135
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=73.69 E-value=20 Score=32.70 Aligned_cols=108 Identities=16% Similarity=0.229 Sum_probs=69.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCC--EEEEECC--HHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CCcE
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAMDY--IVSTFYN--ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPT 91 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy--~V~ta~~--~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-diPV 91 (559)
.+.++|+.+.... ..+.......+. .+..+.. ..+..+++.. .|++|+=... + .-|..+++.+. .+||
T Consensus 47 ~~~l~i~G~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~----~di~v~~s~~-e-~~~~~~~Ea~~~g~pv 119 (172)
T PF00534_consen 47 NYKLVIVGDGEYK-KELKNLIEKLNLKENIIFLGYVPDDELDELYKS----SDIFVSPSRN-E-GFGLSLLEAMACGCPV 119 (172)
T ss_dssp TEEEEEESHCCHH-HHHHHHHHHTTCGTTEEEEESHSHHHHHHHHHH----TSEEEE-BSS-B-SS-HHHHHHHHTT-EE
T ss_pred CeEEEEEcccccc-ccccccccccccccccccccccccccccccccc----ceeccccccc-c-ccccccccccccccce
Confidence 3677777733332 335555544433 3433333 3466666666 5777775555 4 56788888875 7888
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008626 92 IITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (559)
Q Consensus 92 ImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~ 135 (559)
|+ +... ...+.+..+..+|+..+.+.++|.+++..++...
T Consensus 120 I~-~~~~---~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l~~~ 159 (172)
T PF00534_consen 120 IA-SDIG---GNNEIINDGVNGFLFDPNDIEELADAIEKLLNDP 159 (172)
T ss_dssp EE-ESST---HHHHHSGTTTSEEEESTTSHHHHHHHHHHHHHHH
T ss_pred ee-cccc---CCceeeccccceEEeCCCCHHHHHHHHHHHHCCH
Confidence 74 4433 3456678889999999999999999999888654
No 136
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=73.58 E-value=40 Score=35.45 Aligned_cols=106 Identities=12% Similarity=0.107 Sum_probs=71.1
Q ss_pred cEEEEEeC---CH-HHHHHHHHHHhhCCC--EEEEEC--CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-C
Q 008626 18 LRVLLLDQ---DS-SAAAELKFKLEAMDY--IVSTFY--NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-D 88 (559)
Q Consensus 18 lrVLIVDD---D~-~~~~~L~~~L~~~gy--~V~ta~--~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-d 88 (559)
++++|+.+ +- .....+..+.+..+. .|.... +.++..+.+.. .|++++-. ..+ .-|..+++.+. .
T Consensus 253 ~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~----ad~~v~ps-~~E-~~g~~~lEAma~G 326 (405)
T TIGR03449 253 LRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYRA----ADVVAVPS-YNE-SFGLVAMEAQACG 326 (405)
T ss_pred eEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHHHh----CCEEEECC-CCC-CcChHHHHHHHcC
Confidence 67778864 11 344566666666554 344332 34666666665 58777653 334 55778888876 8
Q ss_pred CcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008626 89 LPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 89 iPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
+|||+...... .+.+..|..+++..|-+.++|.+.+..++.
T Consensus 327 ~Pvi~~~~~~~----~e~i~~~~~g~~~~~~d~~~la~~i~~~l~ 367 (405)
T TIGR03449 327 TPVVAARVGGL----PVAVADGETGLLVDGHDPADWADALARLLD 367 (405)
T ss_pred CCEEEecCCCc----HhhhccCCceEECCCCCHHHHHHHHHHHHh
Confidence 99987544332 244678899999999999999999888775
No 137
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=73.11 E-value=23 Score=39.03 Aligned_cols=106 Identities=13% Similarity=0.158 Sum_probs=70.5
Q ss_pred CcEEEEEeC---CHHHHHHHHHHHhhCCC--EEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CCc
Q 008626 17 GLRVLLLDQ---DSSAAAELKFKLEAMDY--IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLP 90 (559)
Q Consensus 17 glrVLIVDD---D~~~~~~L~~~L~~~gy--~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-diP 90 (559)
.++++|+.+ ++...+.+.++++..|. .|.... ..+..+.+.. .|++++--. .+ .-|+.+++.+. .+|
T Consensus 324 ~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G-~~~v~~~l~~----aDv~vlpS~-~E-g~p~~vlEAma~G~P 396 (475)
T cd03813 324 DAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTG-FQNVKEYLPK----LDVLVLTSI-SE-GQPLVILEAMAAGIP 396 (475)
T ss_pred CeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcC-CccHHHHHHh----CCEEEeCch-hh-cCChHHHHHHHcCCC
Confidence 467777754 34566677777766654 344433 4444445544 588877543 34 45788888875 899
Q ss_pred EEEEecCCCHHHHHHHHHc------CCCEEEeCCCCHHHHHHHHHHHHH
Q 008626 91 TIITSNIHCLSTMMKCIAL------GAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 91 VImLSa~~d~e~v~kAi~~------GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
||. |..+.. .+.+.. |.++++..|-+.++|.+.+..++.
T Consensus 397 VVa-td~g~~---~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~ 441 (475)
T cd03813 397 VVA-TDVGSC---RELIEGADDEALGPAGEVVPPADPEALARAILRLLK 441 (475)
T ss_pred EEE-CCCCCh---HHHhcCCcccccCCceEEECCCCHHHHHHHHHHHhc
Confidence 986 444433 333444 789999999999999999988774
No 138
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=71.84 E-value=40 Score=34.59 Aligned_cols=95 Identities=8% Similarity=0.089 Sum_probs=61.4
Q ss_pred HHHHHhhCCC--EEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-----CCcEEEEecCCCHHHHHH
Q 008626 33 LKFKLEAMDY--IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-----DLPTIITSNIHCLSTMMK 105 (559)
Q Consensus 33 L~~~L~~~gy--~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-----diPVImLSa~~d~e~v~k 105 (559)
|++.|..-.. -+........+.+++.. ..||.|++|..-.. ++--++...++ .+..|+=....+...+.+
T Consensus 3 lk~~l~~g~~~~G~~~~~~sp~~~e~~a~--~G~D~v~iD~EHg~-~~~~~~~~~~~a~~~~g~~~~VRvp~~~~~~i~r 79 (249)
T TIGR03239 3 FRQDLLARETLIGCWSALGNPITTEVLGL--AGFDWLLLDGEHAP-NDVLTFIPQLMALKGSASAPVVRPPWNEPVIIKR 79 (249)
T ss_pred HHHHHHcCCceEEEEEcCCCcHHHHHHHh--cCCCEEEEecccCC-CCHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHH
Confidence 4555554322 22233334456666666 56999999998877 66555555443 444444456678889999
Q ss_pred HHHcCCCEEEeCCC-CHHHHHHHHHH
Q 008626 106 CIALGAVEFLRKPL-SEDKLRNLWQH 130 (559)
Q Consensus 106 Ai~~GA~DYLvKPi-s~eeL~~iIq~ 130 (559)
++..||.++++-=+ +.++...+++.
T Consensus 80 ~LD~Ga~gIivP~v~taeea~~~v~a 105 (249)
T TIGR03239 80 LLDIGFYNFLIPFVESAEEAERAVAA 105 (249)
T ss_pred HhcCCCCEEEecCcCCHHHHHHHHHH
Confidence 99999999988555 55666665443
No 139
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=70.74 E-value=11 Score=35.20 Aligned_cols=62 Identities=15% Similarity=0.132 Sum_probs=35.3
Q ss_pred HHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEEEEecC-CCHHHHHHHHHcCCCEEE
Q 008626 50 ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSNI-HCLSTMMKCIALGAVEFL 115 (559)
Q Consensus 50 ~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVImLSa~-~d~e~v~kAi~~GA~DYL 115 (559)
..++++.++. ..+|+||+|. ++.......+-...+..||+++.. .|...+.+..-.-.+|++
T Consensus 80 ~~~~~~~~~~--~~~D~iiIDt--aG~~~~~~~~~~~Ad~~ivv~tpe~~D~y~~~k~~~~~~~~~~ 142 (148)
T cd03114 80 TPEVIRVLDA--AGFDVIIVET--VGVGQSEVDIASMADTTVVVMAPGAGDDIQAIKAGIMEIADIV 142 (148)
T ss_pred HHHHHHHHHh--cCCCEEEEEC--CccChhhhhHHHhCCEEEEEECCCchhHHHHhhhhHhhhcCEE
Confidence 4566776666 5799999999 551222222222337788877776 344444444434445544
No 140
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=70.45 E-value=58 Score=31.76 Aligned_cols=106 Identities=13% Similarity=0.207 Sum_probs=65.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCC--CEEE--EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CCcE
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAMD--YIVS--TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPT 91 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~g--y~V~--ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-diPV 91 (559)
.++++|+.+.. ....+..++...+ -.|. -.-+.++..+++.. .|++|.-... + .-|..+++.+. .+||
T Consensus 230 ~~~l~i~G~~~-~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~----~di~i~~~~~-~-~~~~~~~Ea~~~g~pv 302 (374)
T cd03801 230 DVRLVIVGDGP-LREELEALAAELGLGDRVTFLGFVPDEDLPALYAA----ADVFVLPSLY-E-GFGLVLLEAMAAGLPV 302 (374)
T ss_pred CeEEEEEeCcH-HHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHh----cCEEEecchh-c-cccchHHHHHHcCCcE
Confidence 35666666433 3444444443322 1233 23334666666655 5777765443 4 45777888775 8998
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008626 92 IITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 92 ImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
|+..... ..+.+..+-.+++..+.+.++|.+.+..++.
T Consensus 303 I~~~~~~----~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~ 340 (374)
T cd03801 303 VASDVGG----IPEVVEDGETGLLVPPGDPEALAEAILRLLD 340 (374)
T ss_pred EEeCCCC----hhHHhcCCcceEEeCCCCHHHHHHHHHHHHc
Confidence 8654322 2334566888999999999999999888764
No 141
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=70.36 E-value=16 Score=35.59 Aligned_cols=54 Identities=19% Similarity=0.253 Sum_probs=39.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCC---EEEEECCHHHHHHHhhcCCCCeeEEEEec
Q 008626 18 LRVLLLDQDSSAAAELKFKLEAMDY---IVSTFYNENEALSAFSDKPENFHVAIVEV 71 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy---~V~ta~~~~eAL~~Lre~~~~pDLVIvDv 71 (559)
-+|..||-++.....|++-++.++. ..+.+.+...++..+......||||++|-
T Consensus 66 ~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDP 122 (183)
T PF03602_consen 66 KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDP 122 (183)
T ss_dssp SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECC
Confidence 4899999999999999999998763 34467788888877743337899999994
No 142
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=69.87 E-value=38 Score=33.36 Aligned_cols=90 Identities=9% Similarity=0.121 Sum_probs=65.8
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCC--CEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHH-cC-CCcEEEE
Q 008626 19 RVLLLDQDSSAAAELKFKLEAMD--YIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLET-AK-DLPTIIT 94 (559)
Q Consensus 19 rVLIVDDD~~~~~~L~~~L~~~g--y~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~-Ir-diPVImL 94 (559)
+++|+.+++..++.+++++...| |.|....+.+++++.+......+.|+..+..+.+ .++-++. +. +-|++++
T Consensus 33 ~~yiv~~~~~q~~~v~~I~~~WGg~fnv~~~~s~~~~i~~~k~~G~vvhLtmyga~~~~---~~~~ir~~~~~~~p~LIv 109 (176)
T PRK03958 33 KIILASNDEHVKESVEDIVERWGGPFEVEVTKSWKKEIREWKDGGIVVHLTMYGENIQD---VEPEIREAHRKGEPLLIV 109 (176)
T ss_pred eEEEecCcHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHHHhCCcEEEEEEecCCccc---hHHHHHHhhccCCcEEEE
Confidence 68999999999999999999985 8899999999999999753356899999998866 5555543 32 4566555
Q ss_pred ec-CCCHHHHHHHHHcCCCEEEe
Q 008626 95 SN-IHCLSTMMKCIALGAVEFLR 116 (559)
Q Consensus 95 Sa-~~d~e~v~kAi~~GA~DYLv 116 (559)
-+ ..-...++ ..+||.+
T Consensus 110 vGg~gvp~evy-----e~aDynl 127 (176)
T PRK03958 110 VGAEKVPREVY-----ELADWNV 127 (176)
T ss_pred EcCCCCCHHHH-----hhCCEEe
Confidence 44 33333332 2466776
No 143
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=68.69 E-value=59 Score=32.00 Aligned_cols=96 Identities=21% Similarity=0.234 Sum_probs=59.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCC------CCHHHHHHHcC--
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNT------DGSFKFLETAK-- 87 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~------mdG~eLLe~Ir-- 87 (559)
+...+++.+. .. ..+.+.+...+..+. .+.+.+++.. +.+ ...|.|+++-.-.+. ...+++++.++
T Consensus 80 g~d~v~l~~~-~~-~~~~~~~~~~~i~~i~~v~~~~~~~~-~~~--~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~ 154 (236)
T cd04730 80 GVPVVSFSFG-PP-AEVVERLKAAGIKVIPTVTSVEEARK-AEA--AGADALVAQGAEAGGHRGTFDIGTFALVPEVRDA 154 (236)
T ss_pred CCCEEEEcCC-CC-HHHHHHHHHcCCEEEEeCCCHHHHHH-HHH--cCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHH
Confidence 3444555444 11 233444444455555 4556666554 444 357888876532110 13466777765
Q ss_pred -CCcEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008626 88 -DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (559)
Q Consensus 88 -diPVImLSa~~d~e~v~kAi~~GA~DYLvK 117 (559)
++||++.-+-...+.+.+++..||+++.+-
T Consensus 155 ~~~Pvi~~GGI~~~~~v~~~l~~GadgV~vg 185 (236)
T cd04730 155 VDIPVIAAGGIADGRGIAAALALGADGVQMG 185 (236)
T ss_pred hCCCEEEECCCCCHHHHHHHHHcCCcEEEEc
Confidence 799998888777788999999999998874
No 144
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=68.68 E-value=74 Score=32.54 Aligned_cols=64 Identities=14% Similarity=0.181 Sum_probs=38.7
Q ss_pred eeEEEEecCCCCCCCHHHHHHHcC-CCcEEEEecC----CCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHHH
Q 008626 64 FHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNI----HCLSTMMKCIALGAVEFLRKPL--SEDKLRNLWQHVVH 133 (559)
Q Consensus 64 pDLVIvDv~MPd~mdG~eLLe~Ir-diPVImLSa~----~d~e~v~kAi~~GA~DYLvKPi--s~eeL~~iIq~vlr 133 (559)
.|++|+. ..+..+++.+. .+|||++... .......+.+..+-+++++.+- +.++|.+++..++.
T Consensus 253 ad~~v~~------sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll~ 323 (350)
T cd03785 253 ADLVISR------AGASTVAELAALGLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLELLS 323 (350)
T ss_pred cCEEEEC------CCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHhc
Confidence 5666651 22456667664 8999886432 2222222333334467888765 89999998887764
No 145
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=68.55 E-value=35 Score=35.02 Aligned_cols=103 Identities=11% Similarity=0.111 Sum_probs=68.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CCcEEEEec
Q 008626 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSN 96 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-diPVImLSa 96 (559)
.+++|+.+.+.. ..++..+ .....+.-.-+.++..+.+.. .|++|+-.. + .-|+.+++.+. .+|||....
T Consensus 222 ~~l~ivG~g~~~-~~l~~~~-~~~V~~~g~~~~~~~~~~~~~----ad~~v~ps~--e-~~g~~~~Eama~G~Pvi~~~~ 292 (351)
T cd03804 222 KRLVVIGDGPEL-DRLRAKA-GPNVTFLGRVSDEELRDLYAR----ARAFLFPAE--E-DFGIVPVEAMASGTPVIAYGK 292 (351)
T ss_pred CcEEEEECChhH-HHHHhhc-CCCEEEecCCCHHHHHHHHHh----CCEEEECCc--C-CCCchHHHHHHcCCCEEEeCC
Confidence 678888887653 3333311 112333334466667777766 577776544 4 45777788775 899987644
Q ss_pred CCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008626 97 IHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 97 ~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
... .+.+..|.++++..|-+.++|.+.|..++.
T Consensus 293 ~~~----~e~i~~~~~G~~~~~~~~~~la~~i~~l~~ 325 (351)
T cd03804 293 GGA----LETVIDGVTGILFEEQTVESLAAAVERFEK 325 (351)
T ss_pred CCC----cceeeCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 332 234567888999999999999998887764
No 146
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=68.25 E-value=53 Score=32.45 Aligned_cols=66 Identities=11% Similarity=0.277 Sum_probs=48.1
Q ss_pred CHHHHHHHhhcCCCCee-EEEEecCCCCCCCH--HHHHHHcC---CCcEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008626 49 NENEALSAFSDKPENFH-VAIVEVTTSNTDGS--FKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (559)
Q Consensus 49 ~~~eAL~~Lre~~~~pD-LVIvDv~MPd~mdG--~eLLe~Ir---diPVImLSa~~d~e~v~kAi~~GA~DYLv 116 (559)
+..+..+.+.+ ..++ +++.|+.--+...| +++++.++ ++|||+-..-.+.+.+.+++..||+++++
T Consensus 146 ~~~~~~~~~~~--~g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~~~ipvia~GGi~~~~di~~~~~~Gadgv~i 217 (230)
T TIGR00007 146 SLEELAKRLEE--LGLEGIIYTDISRDGTLSGPNFELTKELVKAVNVPVIASGGVSSIDDLIALKKLGVYGVIV 217 (230)
T ss_pred CHHHHHHHHHh--CCCCEEEEEeecCCCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 44556666666 4566 77788865442223 56777764 78999888889999999999999999886
No 147
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=67.92 E-value=1e+02 Score=30.88 Aligned_cols=109 Identities=16% Similarity=0.133 Sum_probs=68.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCC--EEEEEC--CHHHHHHHhhcCCCCeeEEEEecCC-CCCCCHHHHHHHcC-CCc
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAMDY--IVSTFY--NENEALSAFSDKPENFHVAIVEVTT-SNTDGSFKFLETAK-DLP 90 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy--~V~ta~--~~~eAL~~Lre~~~~pDLVIvDv~M-Pd~mdG~eLLe~Ir-diP 90 (559)
.++++|+.+.+. ...+.++++..+. .|.... +.++....+.. .|++++-... .+ .-|..+++.+. .+|
T Consensus 218 ~~~l~i~G~g~~-~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~----ad~~i~ps~~~~e-~~g~~~~Ea~~~g~P 291 (357)
T cd03795 218 DAPLVIVGEGPL-EAELEALAAALGLLDRVRFLGRLDDEEKAALLAA----CDVFVFPSVERSE-AFGIVLLEAMAFGKP 291 (357)
T ss_pred CcEEEEEeCChh-HHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHh----CCEEEeCCccccc-ccchHHHHHHHcCCC
Confidence 467788876543 3455565544432 344332 34455555554 5777653321 23 45778888885 899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008626 91 TIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 91 VImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
||+.-.....+.+.. .|-++|+..+-+.+++.+.+..++..
T Consensus 292 vi~~~~~~~~~~i~~---~~~~g~~~~~~d~~~~~~~i~~l~~~ 332 (357)
T cd03795 292 VISTEIGTGGSYVNL---HGVTGLVVPPGDPAALAEAIRRLLED 332 (357)
T ss_pred EEecCCCCchhHHhh---CCCceEEeCCCCHHHHHHHHHHHHHC
Confidence 986433333333322 48899999999999999999988753
No 148
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=67.75 E-value=41 Score=29.49 Aligned_cols=68 Identities=13% Similarity=0.248 Sum_probs=37.0
Q ss_pred EEeCCHHHHHHHHHHHhhCCCEEEEECCH---------------------HHHHHHhhcCCCCeeEEEEecC--CCCCCC
Q 008626 22 LLDQDSSAAAELKFKLEAMDYIVSTFYNE---------------------NEALSAFSDKPENFHVAIVEVT--TSNTDG 78 (559)
Q Consensus 22 IVDDD~~~~~~L~~~L~~~gy~V~ta~~~---------------------~eAL~~Lre~~~~pDLVIvDv~--MPd~md 78 (559)
+-|.+......+...|...||.+.....- .++.+++++ ..+|+||.-.. ... .+
T Consensus 7 ~~~~~k~~~~~~~~~l~~~G~~l~aT~gT~~~l~~~gi~~~~v~~~~~~~~~i~~~i~~--~~id~vIn~~~~~~~~-~~ 83 (110)
T cd01424 7 VADRDKPEAVEIAKRLAELGFKLVATEGTAKYLQEAGIPVEVVNKVSEGRPNIVDLIKN--GEIQLVINTPSGKRAI-RD 83 (110)
T ss_pred EEcCcHhHHHHHHHHHHHCCCEEEEchHHHHHHHHcCCeEEEEeecCCCchhHHHHHHc--CCeEEEEECCCCCccC-cc
Confidence 34556556667777777788888643222 344555555 56777766432 111 24
Q ss_pred HHHHHHHcC--CCcEE
Q 008626 79 SFKFLETAK--DLPTI 92 (559)
Q Consensus 79 G~eLLe~Ir--diPVI 92 (559)
|+.+.+..- .+|++
T Consensus 84 ~~~iRR~Av~~~ipl~ 99 (110)
T cd01424 84 GFSIRRAALEYKVPYF 99 (110)
T ss_pred HHHHHHHHHHhCCCEE
Confidence 665444332 56655
No 149
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=67.31 E-value=1.1e+02 Score=30.08 Aligned_cols=77 Identities=14% Similarity=0.076 Sum_probs=50.7
Q ss_pred HhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEec-CCCCCCCHHHHHHHcC-----CCcEEEEecCCCHHHHHHHHHc
Q 008626 37 LEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEV-TTSNTDGSFKFLETAK-----DLPTIITSNIHCLSTMMKCIAL 109 (559)
Q Consensus 37 L~~~gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv-~MPd~mdG~eLLe~Ir-----diPVImLSa~~d~e~v~kAi~~ 109 (559)
....|..+. .+.+.+++.+.+.. .+|++.+.- .......++++++.++ ++|||...+-...+.+.+++.+
T Consensus 117 ~~~~g~~~~v~v~~~~e~~~~~~~---g~~~i~~t~~~~~~~~~~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~ 193 (217)
T cd00331 117 ARELGMEVLVEVHDEEELERALAL---GAKIIGINNRDLKTFEVDLNTTERLAPLIPKDVILVSESGISTPEDVKRLAEA 193 (217)
T ss_pred HHHcCCeEEEEECCHHHHHHHHHc---CCCEEEEeCCCccccCcCHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHc
Confidence 344577654 66777776665544 477776541 1111012345555543 5799989998899999999999
Q ss_pred CCCEEEe
Q 008626 110 GAVEFLR 116 (559)
Q Consensus 110 GA~DYLv 116 (559)
||+++++
T Consensus 194 Ga~gviv 200 (217)
T cd00331 194 GADAVLI 200 (217)
T ss_pred CCCEEEE
Confidence 9999976
No 150
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=66.75 E-value=91 Score=32.33 Aligned_cols=63 Identities=17% Similarity=0.236 Sum_probs=38.8
Q ss_pred eeEEEEecCCCCCCCHHHHHHHcC-CCcEEEEecC----CCHHHHHHHH-HcCCCEEEeCCCC--HHHHHHHHHHHHH
Q 008626 64 FHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNI----HCLSTMMKCI-ALGAVEFLRKPLS--EDKLRNLWQHVVH 133 (559)
Q Consensus 64 pDLVIvDv~MPd~mdG~eLLe~Ir-diPVImLSa~----~d~e~v~kAi-~~GA~DYLvKPis--~eeL~~iIq~vlr 133 (559)
.|++|+ . ..+..+++.+. .+|+|++... .+.....+.+ +.| .++++.+-+ .++|.+.+..++.
T Consensus 253 ~d~~i~-----~-~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~~-~g~~~~~~~~~~~~l~~~i~~ll~ 323 (357)
T PRK00726 253 ADLVIC-----R-AGASTVAELAAAGLPAILVPLPHAADDHQTANARALVDAG-AALLIPQSDLTPEKLAEKLLELLS 323 (357)
T ss_pred CCEEEE-----C-CCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHCC-CEEEEEcccCCHHHHHHHHHHHHc
Confidence 466665 1 12455666665 8999987532 2222223334 445 477776655 8999999888774
No 151
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=66.34 E-value=79 Score=32.21 Aligned_cols=107 Identities=13% Similarity=0.145 Sum_probs=68.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCC--EEEEEC--CHHHHHHHhhcCCCCeeEEEEecCC-----CCCCCHHHHHHHcC
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAMDY--IVSTFY--NENEALSAFSDKPENFHVAIVEVTT-----SNTDGSFKFLETAK 87 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy--~V~ta~--~~~eAL~~Lre~~~~pDLVIvDv~M-----Pd~mdG~eLLe~Ir 87 (559)
..+++|+.+.+.. ..++.+....|+ .|.... +.++....+.. .|++++-... .+ .-|..+++.+.
T Consensus 219 ~~~l~ivG~g~~~-~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~----ad~~v~ps~~~~~~~~E-~~~~~~~EA~a 292 (367)
T cd05844 219 EVRLVIIGDGPLL-AALEALARALGLGGRVTFLGAQPHAEVRELMRR----ARIFLQPSVTAPSGDAE-GLPVVLLEAQA 292 (367)
T ss_pred CeEEEEEeCchHH-HHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHh----CCEEEECcccCCCCCcc-CCchHHHHHHH
Confidence 4678888876533 456666666432 344333 33556666655 5776653321 12 34778888885
Q ss_pred -CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008626 88 -DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 88 -diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
.+|||.-.. .. ..+.+..|..+++..+-+.++|.+.+..++.
T Consensus 293 ~G~PvI~s~~-~~---~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~ 335 (367)
T cd05844 293 SGVPVVATRH-GG---IPEAVEDGETGLLVPEGDVAALAAALGRLLA 335 (367)
T ss_pred cCCCEEEeCC-CC---chhheecCCeeEEECCCCHHHHHHHHHHHHc
Confidence 899985433 32 3344567888999999999999999888764
No 152
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=66.12 E-value=1.1e+02 Score=31.51 Aligned_cols=135 Identities=14% Similarity=0.100 Sum_probs=79.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCC--CEEEEE--CCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CCc
Q 008626 16 KGLRVLLLDQDSSAAAELKFKLEAMD--YIVSTF--YNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLP 90 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~g--y~V~ta--~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-diP 90 (559)
+++||.||.-.-.........+...+ ++++.+ .+.+.|.+...+ ..+.-+. .+--++++.-. |+-
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~--~~~~~~~--------~~~~~ll~~~~iD~V 71 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEE--FGIAKAY--------TDLEELLADPDIDAV 71 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHH--cCCCccc--------CCHHHHhcCCCCCEE
Confidence 46899999987666555566665553 465533 455555555555 2222011 12333444332 555
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHHHHHHhcCCCCccCCCcHHHHHHHHHHhhh
Q 008626 91 TIITSNIHCLSTMMKCIALGAVEFLRKPL--SEDKLRNLWQHVVHKAFNAGGSALSDSLKPVKESVVSMLHLK 161 (559)
Q Consensus 91 VImLSa~~d~e~v~kAi~~GA~DYLvKPi--s~eeL~~iIq~vlrr~~~~~~~~~s~~Lt~re~eVl~li~~~ 161 (559)
+|......-.+.+.+|+++|..=|+-||+ +.+|...++..+-+. -.........++.+.-..+.+++..+
T Consensus 72 ~Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~-~~~l~v~~~~Rf~p~~~~~k~li~~g 143 (342)
T COG0673 72 YIATPNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELARKA-GVKLMVGFNRRFDPAVQALKELIDSG 143 (342)
T ss_pred EEcCCChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHc-CCceeeehhhhcCHHHHHHHHHHhcC
Confidence 55555667888999999999999999999 567777655443332 11111222345666666666666654
No 153
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=65.93 E-value=79 Score=36.59 Aligned_cols=102 Identities=15% Similarity=0.139 Sum_probs=67.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCC--EEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CCcEEE
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAMDY--IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTII 93 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy--~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-diPVIm 93 (559)
..+++||.|.+. ...|+.+....|. .|.......+.-.++.. .|++++=. ..+ .-|..+++.+. .+|||.
T Consensus 429 dirLvIVGdG~~-~eeLk~la~elgL~d~V~FlG~~~Dv~~~Laa----ADVfVlPS-~~E-Gfp~vlLEAMA~GlPVVA 501 (578)
T PRK15490 429 ATRFVLVGDGDL-RAEAQKRAEQLGILERILFVGASRDVGYWLQK----MNVFILFS-RYE-GLPNVLIEAQMVGVPVIS 501 (578)
T ss_pred CeEEEEEeCchh-HHHHHHHHHHcCCCCcEEECCChhhHHHHHHh----CCEEEEcc-ccc-CccHHHHHHHHhCCCEEE
Confidence 467888887653 4567777766654 35555544455455544 58887733 334 56788888875 899985
Q ss_pred EecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Q 008626 94 TSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQ 129 (559)
Q Consensus 94 LSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq 129 (559)
....+. .+.+..|.++|++.+.+.+.|.+.+.
T Consensus 502 TdvGG~----~EiV~dG~nG~LVp~~D~~aLa~ai~ 533 (578)
T PRK15490 502 TPAGGS----AECFIEGVSGFILDDAQTVNLDQACR 533 (578)
T ss_pred eCCCCc----HHHcccCCcEEEECCCChhhHHHHHH
Confidence 544333 34567899999999998877776653
No 154
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=65.79 E-value=98 Score=32.29 Aligned_cols=109 Identities=13% Similarity=0.092 Sum_probs=67.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCC--EEEEE---CCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CCc
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAMDY--IVSTF---YNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLP 90 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy--~V~ta---~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-diP 90 (559)
.++++||.+.+. .+.+.++.+..+. .|... .+..+.+..+.. ..|++++=-. -+ .-|..+++.+. .+|
T Consensus 210 ~~~l~ivG~g~~-~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~---~~d~~v~~s~-~E-gf~~~~lEAma~G~P 283 (359)
T PRK09922 210 EWQLHIIGDGSD-FEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIK---NVSALLLTSK-FE-GFPMTLLEAMSYGIP 283 (359)
T ss_pred CeEEEEEeCCcc-HHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHh---cCcEEEECCc-cc-CcChHHHHHHHcCCC
Confidence 467888876654 4456666655443 34433 233333333222 2466665322 23 34788888876 899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008626 91 TIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 91 VImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
||..-..+. ..+.+..|.++++..|-+.++|.+.+..++..
T Consensus 284 vv~s~~~~g---~~eiv~~~~~G~lv~~~d~~~la~~i~~l~~~ 324 (359)
T PRK09922 284 CISSDCMSG---PRDIIKPGLNGELYTPGNIDEFVGKLNKVISG 324 (359)
T ss_pred EEEeCCCCC---hHHHccCCCceEEECCCCHHHHHHHHHHHHhC
Confidence 985431333 33457789999999999999999999887754
No 155
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=65.47 E-value=6.8 Score=38.46 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=37.5
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEE
Q 008626 20 VLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIV 69 (559)
Q Consensus 20 VLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIv 69 (559)
|||||.....-..|...|++.|+++..+...+..++.+.. ..||.||+
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~--~~~d~iIl 49 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIEN--MKPDFLMI 49 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHhh--CCCCEEEE
Confidence 8999999999999999999999988876655434444444 46887777
No 156
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=64.67 E-value=29 Score=35.82 Aligned_cols=95 Identities=16% Similarity=0.188 Sum_probs=55.2
Q ss_pred HHHHhhCCCEEEEEC--CHHHHHHHhhcCCCCeeEEEEecCCCCCCCH-----HHHHHHcC---CCcEEEEecCCCHHHH
Q 008626 34 KFKLEAMDYIVSTFY--NENEALSAFSDKPENFHVAIVEVTTSNTDGS-----FKFLETAK---DLPTIITSNIHCLSTM 103 (559)
Q Consensus 34 ~~~L~~~gy~V~ta~--~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG-----~eLLe~Ir---diPVImLSa~~d~e~v 103 (559)
.+.|-+.||.|.-+. |..-| +.|.+ -.... ++=+--|= .+| -..++.|+ ++|||+=.+-+....+
T Consensus 116 ae~Lv~eGF~VlPY~~~D~v~a-krL~d--~Gcaa-vMPlgsPI-GSg~Gi~n~~~l~~i~~~~~vPvIvDAGiG~pSda 190 (247)
T PF05690_consen 116 AEILVKEGFVVLPYCTDDPVLA-KRLED--AGCAA-VMPLGSPI-GSGRGIQNPYNLRIIIERADVPVIVDAGIGTPSDA 190 (247)
T ss_dssp HHHHHHTT-EEEEEE-S-HHHH-HHHHH--TT-SE-BEEBSSST-TT---SSTHHHHHHHHHHGSSSBEEES---SHHHH
T ss_pred HHHHHHCCCEEeecCCCCHHHH-HHHHH--CCCCE-EEeccccc-ccCcCCCCHHHHHHHHHhcCCcEEEeCCCCCHHHH
Confidence 456667899999433 33334 34444 22333 33344443 333 23444443 8999999999999999
Q ss_pred HHHHHcCCCEEEeC-----CCCHHHHHHHHHHHHH
Q 008626 104 MKCIALGAVEFLRK-----PLSEDKLRNLWQHVVH 133 (559)
Q Consensus 104 ~kAi~~GA~DYLvK-----Pis~eeL~~iIq~vlr 133 (559)
..|++.|++..|+- --++..+..+.++.+.
T Consensus 191 a~AMElG~daVLvNTAiA~A~dPv~MA~Af~~AV~ 225 (247)
T PF05690_consen 191 AQAMELGADAVLVNTAIAKAKDPVAMARAFKLAVE 225 (247)
T ss_dssp HHHHHTT-SEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred HHHHHcCCceeehhhHHhccCCHHHHHHHHHHHHH
Confidence 99999999999974 4455566666655554
No 157
>PLN02316 synthase/transferase
Probab=64.08 E-value=58 Score=40.15 Aligned_cols=112 Identities=11% Similarity=0.088 Sum_probs=68.8
Q ss_pred CcEEEEEeC--CHHHHHHHHHHHhhCC--C--EEEEECCHHHHHH--HhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-
Q 008626 17 GLRVLLLDQ--DSSAAAELKFKLEAMD--Y--IVSTFYNENEALS--AFSDKPENFHVAIVEVTTSNTDGSFKFLETAK- 87 (559)
Q Consensus 17 glrVLIVDD--D~~~~~~L~~~L~~~g--y--~V~ta~~~~eAL~--~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir- 87 (559)
..+++||.+ +......|..+...++ | .|..+....+.+. ++. ..|++|+=- +-+ .-|+-.++.++
T Consensus 869 ~~qlVIvG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~iya----aADiflmPS-~~E-P~GLvqLEAMa~ 942 (1036)
T PLN02316 869 NGQVVLLGSAPDPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIYA----GADFILVPS-IFE-PCGLTQLTAMRY 942 (1036)
T ss_pred CcEEEEEeCCCCHHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHHHH----hCcEEEeCC-ccc-CccHHHHHHHHc
Confidence 467888885 3444555666655443 2 3443323344432 333 368888753 344 56888888876
Q ss_pred CCcEEEEecCCCHHHHHHHH---------HcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008626 88 DLPTIITSNIHCLSTMMKCI---------ALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 88 diPVImLSa~~d~e~v~kAi---------~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
..|+|+-..-+-.+++...- ..|.++|+..+.+.+.|..+|.+++..
T Consensus 943 GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL~raL~~ 998 (1036)
T PLN02316 943 GSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYALNRAISA 998 (1036)
T ss_pred CCCeEEEcCCCcHhhccccccccccccccccCCceEEeCCCCHHHHHHHHHHHHhh
Confidence 66666644444444443321 125789999999999999998888753
No 158
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=64.05 E-value=72 Score=33.73 Aligned_cols=76 Identities=14% Similarity=0.088 Sum_probs=53.8
Q ss_pred CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHH
Q 008626 49 NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNL 127 (559)
Q Consensus 49 ~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~i 127 (559)
+.++..+.+.. .|+.+. ...++ .-|..+++.+. .+|||.. .... +.+.+..|.+++++.+.+.++|.+.
T Consensus 290 ~~~~~~~~l~~----adv~v~-~s~~e-~~~~~llEAmA~G~PVIas-~~~g---~~e~i~~~~~G~lv~~~d~~~la~~ 359 (396)
T cd03818 290 PYDQYLALLQV----SDVHVY-LTYPF-VLSWSLLEAMACGCLVVGS-DTAP---VREVITDGENGLLVDFFDPDALAAA 359 (396)
T ss_pred CHHHHHHHHHh----CcEEEE-cCccc-ccchHHHHHHHCCCCEEEc-CCCC---chhhcccCCceEEcCCCCHHHHHHH
Confidence 34566666665 466664 33455 55678888875 8999863 3332 3455678899999999999999999
Q ss_pred HHHHHHH
Q 008626 128 WQHVVHK 134 (559)
Q Consensus 128 Iq~vlrr 134 (559)
|..++..
T Consensus 360 i~~ll~~ 366 (396)
T cd03818 360 VIELLDD 366 (396)
T ss_pred HHHHHhC
Confidence 9888753
No 159
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=64.03 E-value=1e+02 Score=31.50 Aligned_cols=64 Identities=14% Similarity=0.095 Sum_probs=40.6
Q ss_pred eeEEEEecCCCCCCCHHHHHHHcC-CCcEEEEecC---CCHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHHHHH
Q 008626 64 FHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNI---HCLSTMMKCIALGAVEFLRKPLS--EDKLRNLWQHVVH 133 (559)
Q Consensus 64 pDLVIvDv~MPd~mdG~eLLe~Ir-diPVImLSa~---~d~e~v~kAi~~GA~DYLvKPis--~eeL~~iIq~vlr 133 (559)
.|++|+ +. .+..+++.+. .+|+|++... .+.....+.+..+-.++++.+-+ .++|.+++..++.
T Consensus 251 ad~~v~----~~--g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~ 320 (348)
T TIGR01133 251 ADLVIS----RA--GASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKLLL 320 (348)
T ss_pred CCEEEE----CC--ChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHHHc
Confidence 466665 12 2456667765 8999986432 12222334466677888877654 8999999888774
No 160
>PLN02275 transferase, transferring glycosyl groups
Probab=63.95 E-value=64 Score=34.13 Aligned_cols=104 Identities=14% Similarity=0.169 Sum_probs=67.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCE-EEEEC---CHHHHHHHhhcCCCCeeEEEEec-CCCCCCCHHHHHHHcC-CCc
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAMDYI-VSTFY---NENEALSAFSDKPENFHVAIVEV-TTSNTDGSFKFLETAK-DLP 90 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~-V~ta~---~~~eAL~~Lre~~~~pDLVIvDv-~MPd~mdG~eLLe~Ir-diP 90 (559)
.++++||.|-+. +..|++.+.+.|.. |+.+. ..++.-..+.. .|+.++=. ......-+..+++.+. .+|
T Consensus 261 ~i~l~ivG~G~~-~~~l~~~~~~~~l~~v~~~~~~~~~~~~~~~l~~----aDv~v~~~~s~~~e~~p~~llEAmA~G~P 335 (371)
T PLN02275 261 RLLFIITGKGPQ-KAMYEEKISRLNLRHVAFRTMWLEAEDYPLLLGS----ADLGVSLHTSSSGLDLPMKVVDMFGCGLP 335 (371)
T ss_pred CeEEEEEeCCCC-HHHHHHHHHHcCCCceEEEcCCCCHHHHHHHHHh----CCEEEEeccccccccccHHHHHHHHCCCC
Confidence 488999998764 56778888776653 44322 35666666666 58776411 1111023567888775 899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Q 008626 91 TIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHV 131 (559)
Q Consensus 91 VImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~v 131 (559)
||... .+. ..+.++.|.++|+.. +.++|.+++..+
T Consensus 336 VVa~~-~gg---~~eiv~~g~~G~lv~--~~~~la~~i~~l 370 (371)
T PLN02275 336 VCAVS-YSC---IGELVKDGKNGLLFS--SSSELADQLLEL 370 (371)
T ss_pred EEEec-CCC---hHHHccCCCCeEEEC--CHHHHHHHHHHh
Confidence 98743 333 345678899999985 588888877654
No 161
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=62.73 E-value=94 Score=32.56 Aligned_cols=98 Identities=16% Similarity=0.187 Sum_probs=64.0
Q ss_pred HHHHHhhCCCEEEEECC--HHHHHHHhhcCCCCeeEEEEecCCCCCCC--HH---HHHHHcC---CCcEEEEecCCCHHH
Q 008626 33 LKFKLEAMDYIVSTFYN--ENEALSAFSDKPENFHVAIVEVTTSNTDG--SF---KFLETAK---DLPTIITSNIHCLST 102 (559)
Q Consensus 33 L~~~L~~~gy~V~ta~~--~~eAL~~Lre~~~~pDLVIvDv~MPd~md--G~---eLLe~Ir---diPVImLSa~~d~e~ 102 (559)
-.+.|-+.||.|.-+.+ ..-|. .|.+ -.+. +++=+--|= .+ |+ ..++.|. ++|||+=.+-...+.
T Consensus 129 Aae~Lv~eGF~VlPY~~~D~v~a~-rLed--~Gc~-aVMPlgsPI-GSg~Gl~n~~~l~~i~e~~~vpVivdAGIgt~sD 203 (267)
T CHL00162 129 AAEFLVKKGFTVLPYINADPMLAK-HLED--IGCA-TVMPLGSPI-GSGQGLQNLLNLQIIIENAKIPVIIDAGIGTPSE 203 (267)
T ss_pred HHHHHHHCCCEEeecCCCCHHHHH-HHHH--cCCe-EEeeccCcc-cCCCCCCCHHHHHHHHHcCCCcEEEeCCcCCHHH
Confidence 34556677999995443 33343 3333 1222 333343332 22 32 3444443 799999999999999
Q ss_pred HHHHHHcCCCEEEe-----CCCCHHHHHHHHHHHHHHH
Q 008626 103 MMKCIALGAVEFLR-----KPLSEDKLRNLWQHVVHKA 135 (559)
Q Consensus 103 v~kAi~~GA~DYLv-----KPis~eeL~~iIq~vlrr~ 135 (559)
+..+++.||++.|+ |--++.++...+++++...
T Consensus 204 a~~AmElGaDgVL~nSaIakA~dP~~mA~a~~~AV~AG 241 (267)
T CHL00162 204 ASQAMELGASGVLLNTAVAQAKNPEQMAKAMKLAVQAG 241 (267)
T ss_pred HHHHHHcCCCEEeecceeecCCCHHHHHHHHHHHHHHH
Confidence 99999999998864 5667788888888877543
No 162
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=62.37 E-value=73 Score=27.54 Aligned_cols=89 Identities=17% Similarity=0.133 Sum_probs=49.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC-CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcEE
Q 008626 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFY-NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTI 92 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~-~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPVI 92 (559)
.+|++||.|+...+. +...|+.++... +-.+.|+.+.- ...+.||+...-.. .-+.++..++ .++||
T Consensus 22 ~~vvvid~d~~~~~~----~~~~~~~~i~gd~~~~~~l~~a~i--~~a~~vv~~~~~d~--~n~~~~~~~r~~~~~~~ii 93 (116)
T PF02254_consen 22 IDVVVIDRDPERVEE----LREEGVEVIYGDATDPEVLERAGI--EKADAVVILTDDDE--ENLLIALLARELNPDIRII 93 (116)
T ss_dssp SEEEEEESSHHHHHH----HHHTTSEEEES-TTSHHHHHHTTG--GCESEEEEESSSHH--HHHHHHHHHHHHTTTSEEE
T ss_pred CEEEEEECCcHHHHH----HHhcccccccccchhhhHHhhcCc--cccCEEEEccCCHH--HHHHHHHHHHHHCCCCeEE
Confidence 578888888776433 334457666422 33445555544 56788888764222 2333433443 56766
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEe
Q 008626 93 ITSNIHCLSTMMKCIALGAVEFLR 116 (559)
Q Consensus 93 mLSa~~d~e~v~kAi~~GA~DYLv 116 (559)
+.... .+......+.||+..+.
T Consensus 94 ~~~~~--~~~~~~l~~~g~d~vi~ 115 (116)
T PF02254_consen 94 ARVND--PENAELLRQAGADHVIS 115 (116)
T ss_dssp EEESS--HHHHHHHHHTT-SEEEE
T ss_pred EEECC--HHHHHHHHHCCcCEEEC
Confidence 65543 34455556788876653
No 163
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=62.26 E-value=71 Score=32.39 Aligned_cols=53 Identities=6% Similarity=0.175 Sum_probs=38.5
Q ss_pred HHHHHHHcC---CCcEEEEecCCC------HHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Q 008626 79 SFKFLETAK---DLPTIITSNIHC------LSTMMKCIALGAVEFLRKPLSEDKLRNLWQHV 131 (559)
Q Consensus 79 G~eLLe~Ir---diPVImLSa~~d------~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~v 131 (559)
++++++.++ ++|+++|+-... ...+.++.++|+++.++-.+..+++...++.+
T Consensus 64 ~~~~~~~vr~~~~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~ 125 (242)
T cd04724 64 VLELVKEIRKKNTIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAA 125 (242)
T ss_pred HHHHHHHHhhcCCCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHH
Confidence 455666666 589998887553 66788899999999999777777665544443
No 164
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=62.05 E-value=79 Score=34.30 Aligned_cols=106 Identities=12% Similarity=0.156 Sum_probs=69.8
Q ss_pred CcEEEEEeCCH-----HHHHHHHHHHhhCCC--EEEEEC--CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC
Q 008626 17 GLRVLLLDQDS-----SAAAELKFKLEAMDY--IVSTFY--NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK 87 (559)
Q Consensus 17 glrVLIVDDD~-----~~~~~L~~~L~~~gy--~V~ta~--~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir 87 (559)
.++++|+.+.. ...+.|+++.+..+. .|.... +.++..++++. .|++|. ....+ .-|+-+++.+.
T Consensus 273 ~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~~~l~~~l~~----adv~v~-~s~~E-~Fgi~~lEAMa 346 (419)
T cd03806 273 KIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPFEELLEELST----ASIGLH-TMWNE-HFGIGVVEYMA 346 (419)
T ss_pred ceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHh----CeEEEE-CCccC-CcccHHHHHHH
Confidence 47889998642 355667777766654 355433 35666777766 577776 33334 45888888875
Q ss_pred -CCcEEEEecCCCHHHHHHHHH---cCCCEEEeCCCCHHHHHHHHHHHHH
Q 008626 88 -DLPTIITSNIHCLSTMMKCIA---LGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 88 -diPVImLSa~~d~e~v~kAi~---~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
.+|+|+....+..+. .+. .|.++||.. +.++|.+.+..++.
T Consensus 347 ~G~pvIa~~~ggp~~~---iv~~~~~g~~G~l~~--d~~~la~ai~~ll~ 391 (419)
T cd03806 347 AGLIPLAHASGGPLLD---IVVPWDGGPTGFLAS--TAEEYAEAIEKILS 391 (419)
T ss_pred cCCcEEEEcCCCCchh---eeeccCCCCceEEeC--CHHHHHHHHHHHHh
Confidence 788886543333222 234 688999973 89999999888875
No 165
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=61.67 E-value=73 Score=33.58 Aligned_cols=103 Identities=18% Similarity=0.150 Sum_probs=61.9
Q ss_pred CCCCcEEEEEe--CCH---HHHHHHHHHHhhCCCEEEEECCHHHHHH-----Hh--hcCCCCeeEEEEecCCCCCCCH--
Q 008626 14 FPKGLRVLLLD--QDS---SAAAELKFKLEAMDYIVSTFYNENEALS-----AF--SDKPENFHVAIVEVTTSNTDGS-- 79 (559)
Q Consensus 14 ~p~glrVLIVD--DD~---~~~~~L~~~L~~~gy~V~ta~~~~eAL~-----~L--re~~~~pDLVIvDv~MPd~mdG-- 79 (559)
||.+.+|.||- +.+ ...+.+...|...|+++.......+.+. .. ......+|+||+ + + .||
T Consensus 1 ~~~~~~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~---~-G-GDGt~ 75 (295)
T PRK01231 1 MPSFRNIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIV---V-G-GDGSL 75 (295)
T ss_pred CCCCCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEE---E-e-CcHHH
Confidence 45555788873 223 3445566667778888876544332211 00 111124788877 2 3 577
Q ss_pred HHHHHHcC--CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008626 80 FKFLETAK--DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (559)
Q Consensus 80 ~eLLe~Ir--diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~ 135 (559)
+..++.+. ++||+-+.. |=.+||. .++.+++..++..+++..
T Consensus 76 l~~~~~~~~~~~Pvlgin~-------------G~lGFl~-~~~~~~~~~~l~~~~~g~ 119 (295)
T PRK01231 76 LGAARALARHNVPVLGINR-------------GRLGFLT-DIRPDELEFKLAEVLDGH 119 (295)
T ss_pred HHHHHHhcCCCCCEEEEeC-------------Ccccccc-cCCHHHHHHHHHHHHcCC
Confidence 34444443 789886653 5567885 688999999999888654
No 166
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=60.70 E-value=1.2e+02 Score=28.97 Aligned_cols=97 Identities=10% Similarity=0.012 Sum_probs=59.5
Q ss_pred CcEEEEEeC--CHHHHHHHHHHHhhCCCEEE----EECCHHHHHHHhhcCCCCeeEEEEecCC-CC---CCCHHHHHHHc
Q 008626 17 GLRVLLLDQ--DSSAAAELKFKLEAMDYIVS----TFYNENEALSAFSDKPENFHVAIVEVTT-SN---TDGSFKFLETA 86 (559)
Q Consensus 17 glrVLIVDD--D~~~~~~L~~~L~~~gy~V~----ta~~~~eAL~~Lre~~~~pDLVIvDv~M-Pd---~mdG~eLLe~I 86 (559)
|...+++.+ .+.....+.+.+++.|..+. .+.+..+++..+ . ...|+|.+...- +. ...+.+.++.+
T Consensus 77 Gad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~-~--~~~d~v~~~~~~~~~~~~~~~~~~~i~~~ 153 (202)
T cd04726 77 GADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLL-K--LGVDIVILHRGIDAQAAGGWWPEDDLKKV 153 (202)
T ss_pred CCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHH-H--CCCCEEEEcCcccccccCCCCCHHHHHHH
Confidence 344444433 33334455556666665543 566888888744 3 357888874311 11 03456777766
Q ss_pred C---CCcEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008626 87 K---DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (559)
Q Consensus 87 r---diPVImLSa~~d~e~v~kAi~~GA~DYLvK 117 (559)
+ ++||++.-+- ..+.+.++++.||+.+++-
T Consensus 154 ~~~~~~~i~~~GGI-~~~~i~~~~~~Gad~vvvG 186 (202)
T cd04726 154 KKLLGVKVAVAGGI-TPDTLPEFKKAGADIVIVG 186 (202)
T ss_pred HhhcCCCEEEECCc-CHHHHHHHHhcCCCEEEEe
Confidence 5 6787655554 5889999999999988763
No 167
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=60.47 E-value=68 Score=33.76 Aligned_cols=88 Identities=14% Similarity=0.123 Sum_probs=57.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEE--ECCHHHHHHH----hhcCCCCeeEEEEecCCCCCCC-HHHHHHHcC--
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVST--FYNENEALSA----FSDKPENFHVAIVEVTTSNTDG-SFKFLETAK-- 87 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~t--a~~~~eAL~~----Lre~~~~pDLVIvDv~MPd~md-G~eLLe~Ir-- 87 (559)
...++++||....+..|..+=-... ++. ..+..+.+.. |.. ..-=.+++|..||.+.| |+++.+..+
T Consensus 30 ~~D~iaaEDTR~t~~LL~~~~I~~~--~is~h~hne~~~~~~li~~l~~--g~~valVSDAG~P~ISDPG~~LV~~a~~~ 105 (275)
T COG0313 30 EVDVIAAEDTRVTRKLLSHLGIKTP--LISYHEHNEKEKLPKLIPLLKK--GKSVALVSDAGTPLISDPGYELVRAAREA 105 (275)
T ss_pred hCCEEEEeccHHHHHHHHHhCCCCc--eecccCCcHHHHHHHHHHHHhc--CCeEEEEecCCCCcccCccHHHHHHHHHc
Confidence 4679999999888766554432221 222 2344444444 444 44567899999998533 999999886
Q ss_pred CCcEEEEecCCCHHHHHHHHHcC
Q 008626 88 DLPTIITSNIHCLSTMMKCIALG 110 (559)
Q Consensus 88 diPVImLSa~~d~e~v~kAi~~G 110 (559)
.++|+.+.+.+..-.+ .+..|
T Consensus 106 gi~V~~lPG~sA~~tA--L~~SG 126 (275)
T COG0313 106 GIRVVPLPGPSALITA--LSASG 126 (275)
T ss_pred CCcEEecCCccHHHHH--HHHcC
Confidence 7999999887654433 34455
No 168
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=60.26 E-value=1.2e+02 Score=31.82 Aligned_cols=103 Identities=15% Similarity=0.137 Sum_probs=52.8
Q ss_pred cEEEEE-eCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CCcEEEEe
Q 008626 18 LRVLLL-DQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIITS 95 (559)
Q Consensus 18 lrVLIV-DDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-diPVImLS 95 (559)
++++++ .++....+.|+......+-.|....-..+..+++.. .|++|+ . ..|..+++.+. .+|+|+..
T Consensus 231 ~~~viv~G~~~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~~----aD~~v~-----~-~gg~t~~EA~a~g~PvI~~~ 300 (380)
T PRK13609 231 LQVVVVCGKNEALKQSLEDLQETNPDALKVFGYVENIDELFRV----TSCMIT-----K-PGGITLSEAAALGVPVILYK 300 (380)
T ss_pred cEEEEEeCCCHHHHHHHHHHHhcCCCcEEEEechhhHHHHHHh----ccEEEe-----C-CCchHHHHHHHhCCCEEECC
Confidence 455544 444445555555554433223333322233333333 466664 2 23666777764 89987754
Q ss_pred cCC--CHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008626 96 NIH--CLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 96 a~~--d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
... +.+......+.|+. ....+.++|.+.+..++.
T Consensus 301 ~~~g~~~~n~~~~~~~G~~---~~~~~~~~l~~~i~~ll~ 337 (380)
T PRK13609 301 PVPGQEKENAMYFERKGAA---VVIRDDEEVFAKTEALLQ 337 (380)
T ss_pred CCCCcchHHHHHHHhCCcE---EEECCHHHHHHHHHHHHC
Confidence 322 22222223345653 234688888888877763
No 169
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=59.96 E-value=76 Score=31.85 Aligned_cols=107 Identities=13% Similarity=0.230 Sum_probs=67.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCC--EEEEE--CCHHHHHHHhhcCCCCeeEEEEecCCC-----CCCCHHHHHHHcC
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAMDY--IVSTF--YNENEALSAFSDKPENFHVAIVEVTTS-----NTDGSFKFLETAK 87 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy--~V~ta--~~~~eAL~~Lre~~~~pDLVIvDv~MP-----d~mdG~eLLe~Ir 87 (559)
.++++|+.+.+. ...+...+...+. .|... -+.++....+.. .|++|+-..-+ + .-|..+++.+.
T Consensus 210 ~~~l~i~G~~~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~----adi~l~~s~~~~~~~~e-~~~~~~~Ea~a 283 (355)
T cd03799 210 DFRLDIVGDGPL-RDELEALIAELGLEDRVTLLGAKSQEEVRELLRA----ADLFVLPSVTAADGDRE-GLPVVLMEAMA 283 (355)
T ss_pred CeEEEEEECCcc-HHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHh----CCEEEecceecCCCCcc-CccHHHHHHHH
Confidence 456666665433 2344555554432 23322 234666677665 57777644331 3 34778888875
Q ss_pred -CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008626 88 -DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 88 -diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
.+|||. +.... ..+.+..|.++++..+-+.++|.+.+..++.
T Consensus 284 ~G~Pvi~-~~~~~---~~~~i~~~~~g~~~~~~~~~~l~~~i~~~~~ 326 (355)
T cd03799 284 MGLPVIS-TDVSG---IPELVEDGETGLLVPPGDPEALADAIERLLD 326 (355)
T ss_pred cCCCEEe-cCCCC---cchhhhCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 899986 33333 2345677889999999999999999888764
No 170
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=59.74 E-value=38 Score=35.64 Aligned_cols=100 Identities=15% Similarity=0.219 Sum_probs=59.7
Q ss_pred cEEEEEe--CCHHH---HHHHHHHHhhCCCEEEEECCHHHHHHH----------h---hcCCCCeeEEEEecCCCCCCCH
Q 008626 18 LRVLLLD--QDSSA---AAELKFKLEAMDYIVSTFYNENEALSA----------F---SDKPENFHVAIVEVTTSNTDGS 79 (559)
Q Consensus 18 lrVLIVD--DD~~~---~~~L~~~L~~~gy~V~ta~~~~eAL~~----------L---re~~~~pDLVIvDv~MPd~mdG 79 (559)
|+|.|+- +.+.. ...+...|++.|+.|.........+.. . ......+|+||+ + + +||
T Consensus 1 m~igii~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~---l-G-GDG 75 (292)
T PRK01911 1 MKIAIFGQTYQESASPYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELDGSADMVIS---I-G-GDG 75 (292)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcccCCCEEEE---E-C-CcH
Confidence 4566662 22333 455566677788888865443332210 0 111124788887 2 3 577
Q ss_pred --HHHHHHcC--CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008626 80 --FKFLETAK--DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 136 (559)
Q Consensus 80 --~eLLe~Ir--diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~ 136 (559)
+..++.+. ++||+-+. .|=.+||. .++.+++...+..+++...
T Consensus 76 T~L~aa~~~~~~~~PilGIN-------------~G~lGFLt-~~~~~~~~~~l~~i~~g~~ 122 (292)
T PRK01911 76 TFLRTATYVGNSNIPILGIN-------------TGRLGFLA-TVSKEEIEETIDELLNGDY 122 (292)
T ss_pred HHHHHHHHhcCCCCCEEEEe-------------cCCCCccc-ccCHHHHHHHHHHHHcCCc
Confidence 34444443 68988654 36677887 5889999999988887654
No 171
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=59.27 E-value=77 Score=32.72 Aligned_cols=65 Identities=14% Similarity=0.134 Sum_probs=46.2
Q ss_pred eeEEEEecCCCCCCCHHHHHHHcC-CCcEEEEecC-CCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008626 64 FHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNI-HCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 64 pDLVIvDv~MPd~mdG~eLLe~Ir-diPVImLSa~-~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
.|++|.=- ..+ .-|+.+++.+. .+|||..... .. .+.+..|.++||+.+-+.++|.++|..++..
T Consensus 279 ad~~v~~S-~~E-g~~~~~lEAma~G~PvI~~~~~~g~----~~~v~~~~~G~lv~~~d~~~la~~i~~ll~~ 345 (372)
T cd04949 279 AQLSLLTS-QSE-GFGLSLMEALSHGLPVISYDVNYGP----SEIIEDGENGYLVPKGDIEALAEAIIELLND 345 (372)
T ss_pred hhEEEecc-ccc-ccChHHHHHHhCCCCEEEecCCCCc----HHHcccCCCceEeCCCcHHHHHHHHHHHHcC
Confidence 45555433 234 45778888875 8999875432 22 2346788999999999999999999888753
No 172
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=58.95 E-value=67 Score=34.09 Aligned_cols=82 Identities=21% Similarity=0.210 Sum_probs=55.2
Q ss_pred HHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCC-----CC-HHHHHHHcC---CCcEEEEecCCCHHH
Q 008626 33 LKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNT-----DG-SFKFLETAK---DLPTIITSNIHCLST 102 (559)
Q Consensus 33 L~~~L~~~gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~-----md-G~eLLe~Ir---diPVImLSa~~d~e~ 102 (559)
+...|+..|..|. ++.+.++|...++. .+|.||+-=.-.+. .. -+.|+..++ ++|||+--+-.+-..
T Consensus 128 ~i~~l~~~gi~v~~~v~s~~~A~~a~~~---G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~~iPViaAGGI~dg~~ 204 (330)
T PF03060_consen 128 VIERLHAAGIKVIPQVTSVREARKAAKA---GADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAVDIPVIAAGGIADGRG 204 (330)
T ss_dssp HHHHHHHTT-EEEEEESSHHHHHHHHHT---T-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH-SS-EEEESS--SHHH
T ss_pred HHHHHHHcCCccccccCCHHHHHHhhhc---CCCEEEEeccccCCCCCccccceeeHHHHHhhhcCCcEEEecCcCCHHH
Confidence 4456777787766 99999999887766 48988876322210 11 355666664 799999888889999
Q ss_pred HHHHHHcCCCEEEeC
Q 008626 103 MMKCIALGAVEFLRK 117 (559)
Q Consensus 103 v~kAi~~GA~DYLvK 117 (559)
+..++.+||++...=
T Consensus 205 iaaal~lGA~gV~~G 219 (330)
T PF03060_consen 205 IAAALALGADGVQMG 219 (330)
T ss_dssp HHHHHHCT-SEEEES
T ss_pred HHHHHHcCCCEeecC
Confidence 999999999999863
No 173
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=58.89 E-value=59 Score=31.16 Aligned_cols=73 Identities=19% Similarity=0.322 Sum_probs=51.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhC--CCEEEEEC-------CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAM--DYIVSTFY-------NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK 87 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~--gy~V~ta~-------~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir 87 (559)
+.+|.++...+...+.+.+.|++. |.+++-+. ...+.++.+.+ ..+|+|++-+.+|. .. .++...+
T Consensus 46 ~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~--~~pdiv~vglG~Pk-QE--~~~~~~~ 120 (171)
T cd06533 46 GLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINA--SGADILFVGLGAPK-QE--LWIARHK 120 (171)
T ss_pred CCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHH--cCCCEEEEECCCCH-HH--HHHHHHH
Confidence 689999999999999999888865 55655421 23335677777 78999999999998 43 3444443
Q ss_pred ---CCcEEEE
Q 008626 88 ---DLPTIIT 94 (559)
Q Consensus 88 ---diPVImL 94 (559)
..+|++-
T Consensus 121 ~~l~~~v~~~ 130 (171)
T cd06533 121 DRLPVPVAIG 130 (171)
T ss_pred HHCCCCEEEE
Confidence 4455543
No 174
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=58.77 E-value=84 Score=32.73 Aligned_cols=82 Identities=20% Similarity=0.158 Sum_probs=55.6
Q ss_pred HHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHH--------HHHHcC-CCcEEEEecCCC
Q 008626 30 AAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFK--------FLETAK-DLPTIITSNIHC 99 (559)
Q Consensus 30 ~~~L~~~L~~~gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~e--------LLe~Ir-diPVImLSa~~d 99 (559)
+..|...-..+|.++. .+.+.+|+-..+.- +.-|+.++.-+ ...|+ +...++ +.-+|.-|+-..
T Consensus 145 l~el~~~A~~LGm~~LVEVh~~eEl~rAl~~-----ga~iIGINnRd-L~tf~vdl~~t~~la~~~p~~~~~IsESGI~~ 218 (254)
T COG0134 145 LEELVDRAHELGMEVLVEVHNEEELERALKL-----GAKIIGINNRD-LTTLEVDLETTEKLAPLIPKDVILISESGIST 218 (254)
T ss_pred HHHHHHHHHHcCCeeEEEECCHHHHHHHHhC-----CCCEEEEeCCC-cchheecHHHHHHHHhhCCCCcEEEecCCCCC
Confidence 3445555556788866 89999998888775 33344454444 33332 222333 566677778888
Q ss_pred HHHHHHHHHcCCCEEEeC
Q 008626 100 LSTMMKCIALGAVEFLRK 117 (559)
Q Consensus 100 ~e~v~kAi~~GA~DYLvK 117 (559)
.+.+++...+||++||+-
T Consensus 219 ~~dv~~l~~~ga~a~LVG 236 (254)
T COG0134 219 PEDVRRLAKAGADAFLVG 236 (254)
T ss_pred HHHHHHHHHcCCCEEEec
Confidence 999999999999999974
No 175
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=58.60 E-value=34 Score=36.05 Aligned_cols=68 Identities=15% Similarity=0.184 Sum_probs=51.0
Q ss_pred EECCHHHHHHHhhcCCCCeeEEEEecC---------------------------------C--CCCCCHHHHHHHcC---
Q 008626 46 TFYNENEALSAFSDKPENFHVAIVEVT---------------------------------T--SNTDGSFKFLETAK--- 87 (559)
Q Consensus 46 ta~~~~eAL~~Lre~~~~pDLVIvDv~---------------------------------M--Pd~mdG~eLLe~Ir--- 87 (559)
-|++.+||+..++. .+|+|=+=+. . .. ..++++++.+.
T Consensus 118 D~stleEal~a~~~---Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~-~~d~elLk~l~~~~ 193 (283)
T cd04727 118 GARNLGEALRRISE---GAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEI-QAPYELVKETAKLG 193 (283)
T ss_pred cCCCHHHHHHHHHC---CCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccc-CCCHHHHHHHHHhc
Confidence 57789999988877 4787766541 0 11 24678888775
Q ss_pred CCcEE--EEecCCCHHHHHHHHHcCCCEEEeC
Q 008626 88 DLPTI--ITSNIHCLSTMMKCIALGAVEFLRK 117 (559)
Q Consensus 88 diPVI--mLSa~~d~e~v~kAi~~GA~DYLvK 117 (559)
.+||| ....-...+.+..+++.||+.+++=
T Consensus 194 ~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVG 225 (283)
T cd04727 194 RLPVVNFAAGGVATPADAALMMQLGADGVFVG 225 (283)
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 69997 6666678999999999999999764
No 176
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=58.34 E-value=1.6e+02 Score=30.36 Aligned_cols=107 Identities=15% Similarity=0.182 Sum_probs=67.0
Q ss_pred CcEEEEEe---CCHHHHHHHHHHHhhCCC---EEEEE---CCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC
Q 008626 17 GLRVLLLD---QDSSAAAELKFKLEAMDY---IVSTF---YNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK 87 (559)
Q Consensus 17 glrVLIVD---DD~~~~~~L~~~L~~~gy---~V~ta---~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir 87 (559)
..+++++. +.....+.+++.+...+. .|+.+ -+..+....+.. .|++|+=.. .+ .-|.-+++.+.
T Consensus 229 ~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----aDv~v~ps~-~e-~~g~~~lEA~a 302 (388)
T TIGR02149 229 DVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSN----AEVFVCPSI-YE-PLGIVNLEAMA 302 (388)
T ss_pred cCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHh----CCEEEeCCc-cC-CCChHHHHHHH
Confidence 35555553 234455566666655433 23332 245666666655 688776432 34 45777788875
Q ss_pred -CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCH------HHHHHHHHHHHH
Q 008626 88 -DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSE------DKLRNLWQHVVH 133 (559)
Q Consensus 88 -diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~------eeL~~iIq~vlr 133 (559)
.+|||+. .... ..+.+..|.++++..+-+. ++|.+.|..++.
T Consensus 303 ~G~PvI~s-~~~~---~~e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~ 351 (388)
T TIGR02149 303 CGTPVVAS-ATGG---IPEVVVDGETGFLVPPDNSDADGFQAELAKAINILLA 351 (388)
T ss_pred cCCCEEEe-CCCC---HHHHhhCCCceEEcCCCCCcccchHHHHHHHHHHHHh
Confidence 8998864 3332 3455678889999998887 888888877664
No 177
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=57.83 E-value=72 Score=35.65 Aligned_cols=98 Identities=10% Similarity=0.116 Sum_probs=56.2
Q ss_pred CCcEEEEEeCCHHHH---HHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEec--CCCCCCCHHHHHHH-cC--
Q 008626 16 KGLRVLLLDQDSSAA---AELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEV--TTSNTDGSFKFLET-AK-- 87 (559)
Q Consensus 16 ~glrVLIVDDD~~~~---~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv--~MPd~mdG~eLLe~-Ir-- 87 (559)
.+.+|+|++-|..-. ..+..+....|..+..+.+..++.+.+.. ..+|+||+|. .++...+.++-+.. +.
T Consensus 251 ~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~--~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~ 328 (432)
T PRK12724 251 MGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLAR--DGSELILIDTAGYSHRNLEQLERMQSFYSCF 328 (432)
T ss_pred cCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHh--CCCCEEEEeCCCCCccCHHHHHHHHHHHHhh
Confidence 356899999886222 22344444456666666667777777775 6799999996 22210112222222 11
Q ss_pred -----CCcEEEEecCCCHHHHHHHHH----cCCCEEE
Q 008626 88 -----DLPTIITSNIHCLSTMMKCIA----LGAVEFL 115 (559)
Q Consensus 88 -----diPVImLSa~~d~e~v~kAi~----~GA~DYL 115 (559)
.-.++++++....+.+..+++ .|.+..+
T Consensus 329 ~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glI 365 (432)
T PRK12724 329 GEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRIL 365 (432)
T ss_pred cCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEE
Confidence 135678888776655555543 4555543
No 178
>PRK14099 glycogen synthase; Provisional
Probab=57.77 E-value=74 Score=35.55 Aligned_cols=111 Identities=15% Similarity=0.161 Sum_probs=61.1
Q ss_pred CcEEEEEeC-CHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CCcEEE
Q 008626 17 GLRVLLLDQ-DSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTII 93 (559)
Q Consensus 17 glrVLIVDD-D~~~~~~L~~~L~~~gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-diPVIm 93 (559)
.++++|+.+ +......++++....+-.+. ...- .+.+..+.. ...|++++=- .-+ .-|+-.++.++ .+|+|+
T Consensus 324 ~~~lvivG~G~~~~~~~l~~l~~~~~~~v~~~~G~-~~~l~~~~~--a~aDifv~PS-~~E-~fGl~~lEAma~G~ppVv 398 (485)
T PRK14099 324 GAQLALLGSGDAELEARFRAAAQAYPGQIGVVIGY-DEALAHLIQ--AGADALLVPS-RFE-PCGLTQLCALRYGAVPVV 398 (485)
T ss_pred CcEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCC-CHHHHHHHH--hcCCEEEECC-ccC-CCcHHHHHHHHCCCCcEE
Confidence 356666665 33445556665554432332 2222 334433322 1358887733 334 56788888876 555554
Q ss_pred EecCCCHHHHHHHHH----cC-CCEEEeCCCCHHHHHHHHHHHH
Q 008626 94 TSNIHCLSTMMKCIA----LG-AVEFLRKPLSEDKLRNLWQHVV 132 (559)
Q Consensus 94 LSa~~d~e~v~kAi~----~G-A~DYLvKPis~eeL~~iIq~vl 132 (559)
-...+-.+.+...-+ .| .++|+..|.+.++|.+++.+++
T Consensus 399 s~~GGl~d~V~~~~~~~~~~~~~~G~l~~~~d~~~La~ai~~a~ 442 (485)
T PRK14099 399 ARVGGLADTVVDANEMAIATGVATGVQFSPVTADALAAALRKTA 442 (485)
T ss_pred eCCCCccceeecccccccccCCCceEEeCCCCHHHHHHHHHHHH
Confidence 332222233322210 12 5799999999999999988643
No 179
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=57.46 E-value=12 Score=36.21 Aligned_cols=73 Identities=15% Similarity=0.139 Sum_probs=45.9
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEec-CCCCCCC--HHHHHHHcC-CCcEEEE
Q 008626 20 VLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEV-TTSNTDG--SFKFLETAK-DLPTIIT 94 (559)
Q Consensus 20 VLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv-~MPd~md--G~eLLe~Ir-diPVImL 94 (559)
|||||.....-..|..+|+..|++|..+.+..--++.+.. ..||.||+-= -+.-..+ -..+++.+. ++||+-+
T Consensus 2 il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~~--~~~~~iilsgGP~~~~~~~~~~~~i~~~~~~~PiLGI 78 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQ--LAPSHLVISPGPCTPNEAGISLAVIRHFADKLPILGV 78 (191)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHh--cCCCeEEEcCCCCChHhCCCchHHHHHhcCCCCEEEE
Confidence 8999999999999999999999988876654322344444 4577766622 1110011 234454443 6787655
No 180
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=57.42 E-value=1.1e+02 Score=31.28 Aligned_cols=96 Identities=9% Similarity=0.052 Sum_probs=60.9
Q ss_pred HHHHHhhCC--CEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-----CCcEEEEecCCCHHHHHH
Q 008626 33 LKFKLEAMD--YIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-----DLPTIITSNIHCLSTMMK 105 (559)
Q Consensus 33 L~~~L~~~g--y~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-----diPVImLSa~~d~e~v~k 105 (559)
|++.|+.-. +-+.........++.+.. ..||.|++|+.-.. .+.-++...++ ...+|+=....+...+.+
T Consensus 3 lk~~l~~g~~~~g~~~~~~~p~~~e~~~~--~g~D~v~iDlEH~~-~~~~~~~~~~~a~~~~g~~~~VRv~~~~~~~i~~ 79 (249)
T TIGR02311 3 FKQALKEGQPQIGLWLGLADPYAAEICAG--AGFDWLLIDGEHAP-NDVRTILSQLQALAPYPSSPVVRPAIGDPVLIKQ 79 (249)
T ss_pred HHHHHHCCCceEEEEEeCCCcHHHHHHHh--cCCCEEEEeccCCC-CCHHHHHHHHHHHHhcCCCcEEECCCCCHHHHHH
Confidence 455555422 223333344566666666 56999999998777 66655555443 344444445556678999
Q ss_pred HHHcCCCEEEeC-CCCHHHHHHHHHHH
Q 008626 106 CIALGAVEFLRK-PLSEDKLRNLWQHV 131 (559)
Q Consensus 106 Ai~~GA~DYLvK-Pis~eeL~~iIq~v 131 (559)
++..||++.++- --+.+++...++.+
T Consensus 80 ~Ld~Ga~gIivP~v~s~e~a~~~v~~~ 106 (249)
T TIGR02311 80 LLDIGAQTLLVPMIETAEQAEAAVAAT 106 (249)
T ss_pred HhCCCCCEEEecCcCCHHHHHHHHHHc
Confidence 999999998764 44677777665544
No 181
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=57.32 E-value=32 Score=34.75 Aligned_cols=75 Identities=19% Similarity=0.137 Sum_probs=47.2
Q ss_pred cEEEEEeCCH------HHHHHHHHHHhhCCCEEEEEC-CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHc-CCC
Q 008626 18 LRVLLLDQDS------SAAAELKFKLEAMDYIVSTFY-NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA-KDL 89 (559)
Q Consensus 18 lrVLIVDDD~------~~~~~L~~~L~~~gy~V~ta~-~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~I-rdi 89 (559)
|+||++.... .....+...|.+.|++|+.+. +.......+.. ..+|+|.+-..... .-....+..+ +.+
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~~~--~~~diih~~~~~~~-~~~~~~~~~~~~~~ 77 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKKALISKIEI--INADIVHLHWIHGG-FLSIEDLSKLLDRK 77 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecchhhhChhc--ccCCEEEEEccccC-ccCHHHHHHHHcCC
Confidence 4778776543 466778888888899888444 33344445555 78999988654433 3344444444 478
Q ss_pred cEEEEe
Q 008626 90 PTIITS 95 (559)
Q Consensus 90 PVImLS 95 (559)
|+|+..
T Consensus 78 ~~v~~~ 83 (365)
T cd03825 78 PVVWTL 83 (365)
T ss_pred CEEEEc
Confidence 877553
No 182
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=57.19 E-value=70 Score=32.21 Aligned_cols=103 Identities=10% Similarity=0.162 Sum_probs=63.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCC--EEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CCcEEE
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAMDY--IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTII 93 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy--~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-diPVIm 93 (559)
.++++|+.+.+.. ..+.+.+...+. .|.......+...++.. .|++|+-... + .-|..+++.+. .+|||+
T Consensus 219 ~~~l~i~G~g~~~-~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~v~~s~~-e-~~~~~~~Ea~a~G~PvI~ 291 (360)
T cd04951 219 DIKLLIAGDGPLR-ATLERLIKALGLSNRVKLLGLRDDIAAYYNA----ADLFVLSSAW-E-GFGLVVAEAMACELPVVA 291 (360)
T ss_pred CeEEEEEcCCCcH-HHHHHHHHhcCCCCcEEEecccccHHHHHHh----hceEEecccc-c-CCChHHHHHHHcCCCEEE
Confidence 4678888765533 455566655442 35444444455555555 5777764433 3 34778888875 899885
Q ss_pred EecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 008626 94 TSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVV 132 (559)
Q Consensus 94 LSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vl 132 (559)
+...... +.+.. .+++..+-+.++|...+..++
T Consensus 292 -~~~~~~~---e~i~~--~g~~~~~~~~~~~~~~i~~ll 324 (360)
T cd04951 292 -TDAGGVR---EVVGD--SGLIVPISDPEALANKIDEIL 324 (360)
T ss_pred -ecCCChh---hEecC--CceEeCCCCHHHHHHHHHHHH
Confidence 4333322 22222 677888999999999988876
No 183
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=57.06 E-value=1e+02 Score=30.33 Aligned_cols=63 Identities=14% Similarity=0.207 Sum_probs=42.6
Q ss_pred eeEEEEecCCCCCCCHHHHHHHcC-CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008626 64 FHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 64 pDLVIvDv~MPd~mdG~eLLe~Ir-diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
.|++|+-... + .-|..+++.+. .+|||+ +..... .+.+.. .+++..+-+.++|...+..++..
T Consensus 269 adi~v~ps~~-e-~~~~~~~Ea~a~g~PvI~-~~~~~~---~e~~~~--~g~~~~~~~~~~l~~~i~~l~~~ 332 (365)
T cd03807 269 LDVFVLSSLS-E-GFPNVLLEAMACGLPVVA-TDVGDN---AELVGD--TGFLVPPGDPEALAEAIEALLAD 332 (365)
T ss_pred CCEEEeCCcc-c-cCCcHHHHHHhcCCCEEE-cCCCCh---HHHhhc--CCEEeCCCCHHHHHHHHHHHHhC
Confidence 5777765444 3 45677888875 899886 333332 222333 67899999999999998887753
No 184
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=56.98 E-value=47 Score=32.81 Aligned_cols=65 Identities=12% Similarity=0.249 Sum_probs=48.3
Q ss_pred HHHHHHHhhcCCCCee-EEEEecCCCCCCCH--HHHHHHcC---CCcEEEEecCCCHHHHHHHHHcC-CCEEEe
Q 008626 50 ENEALSAFSDKPENFH-VAIVEVTTSNTDGS--FKFLETAK---DLPTIITSNIHCLSTMMKCIALG-AVEFLR 116 (559)
Q Consensus 50 ~~eAL~~Lre~~~~pD-LVIvDv~MPd~mdG--~eLLe~Ir---diPVImLSa~~d~e~v~kAi~~G-A~DYLv 116 (559)
..+..+.+.+ ..++ +++.|+.--+...| +++++.+. .+|||.-..-.+.+.+.++++.| |+++++
T Consensus 148 ~~e~~~~~~~--~g~~~ii~~~~~~~g~~~G~d~~~i~~l~~~~~ipvia~GGi~~~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 148 AEDLAKRFED--AGVKAIIYTDISRDGTLSGPNVEATRELAAAVPIPVIASGGVSSLDDIKALKGLGAVEGVIV 219 (233)
T ss_pred HHHHHHHHHh--cCCCEEEEeeecCcCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCccEEEE
Confidence 3566666666 4566 88888865442344 67777775 68999888889999999999998 998886
No 185
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=56.84 E-value=92 Score=29.86 Aligned_cols=66 Identities=11% Similarity=0.234 Sum_probs=49.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhC--CCEEEEEC-------CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAM--DYIVSTFY-------NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK 87 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~--gy~V~ta~-------~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir 87 (559)
+.+|.++...+...+.+...|++. +.+++-+. ..++.++.|.. ..+|+|++-+.+|. .-.++...+
T Consensus 48 ~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~--~~pdiv~vglG~Pk---QE~~~~~~~ 122 (172)
T PF03808_consen 48 GKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINA--SGPDIVFVGLGAPK---QERWIARHR 122 (172)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHH--cCCCEEEEECCCCH---HHHHHHHHH
Confidence 579999999999999999999865 66666333 24556666666 78999999999988 334555544
No 186
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=56.81 E-value=19 Score=37.12 Aligned_cols=55 Identities=15% Similarity=0.122 Sum_probs=40.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC-------CHHHHHHHhhcCCCCeeEEEEecCCC
Q 008626 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFY-------NENEALSAFSDKPENFHVAIVEVTTS 74 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~-------~~~eAL~~Lre~~~~pDLVIvDv~MP 74 (559)
|||||+..+-.+-..|...|...||+|+.+. +.++..+.+.+ ..||+||--..+.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~~dl~d~~~~~~~~~~--~~pd~Vin~aa~~ 62 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRSDLDLTDPEAVAKLLEA--FKPDVVINCAAYT 62 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTTCS-TTSHHHHHHHHHH--H--SEEEE-----
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCchhcCCCCHHHHHHHHHH--hCCCeEeccceee
Confidence 6999999999999999999999999988763 55566666666 6789888766543
No 187
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=56.73 E-value=82 Score=35.34 Aligned_cols=98 Identities=16% Similarity=0.217 Sum_probs=60.6
Q ss_pred CCcEEEEEeCC----HHHHHHHHHHHhhC-CCEE--EEECCHHHHHHHhhcCCCCeeEEEEecCCCC------CC-----
Q 008626 16 KGLRVLLLDQD----SSAAAELKFKLEAM-DYIV--STFYNENEALSAFSDKPENFHVAIVEVTTSN------TD----- 77 (559)
Q Consensus 16 ~glrVLIVDDD----~~~~~~L~~~L~~~-gy~V--~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd------~m----- 77 (559)
.+..++++|.. ..+...++.+-.+. +..| -.+.+.++|..++.. .+|.|.+.+. |+ ..
T Consensus 239 agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~a---Gad~i~vg~g-~gs~~~~r~~~~~g~ 314 (486)
T PRK05567 239 AGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEA---GADAVKVGIG-PGSICTTRIVAGVGV 314 (486)
T ss_pred hCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHc---CCCEEEECCC-CCccccceeecCCCc
Confidence 46788888854 12333344443343 3333 377788888888766 4677765331 11 00
Q ss_pred CHHHHHH----HcC--CCcEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008626 78 GSFKFLE----TAK--DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (559)
Q Consensus 78 dG~eLLe----~Ir--diPVImLSa~~d~e~v~kAi~~GA~DYLvK 117 (559)
.-++++. ..+ ++|||+=..-.....+.+|+.+||+..++=
T Consensus 315 p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v~~G 360 (486)
T PRK05567 315 PQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVMLG 360 (486)
T ss_pred CHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEEEEC
Confidence 1133332 222 588888778888899999999999988864
No 188
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=56.51 E-value=67 Score=34.01 Aligned_cols=55 Identities=15% Similarity=0.165 Sum_probs=38.6
Q ss_pred CHHHHHHHcC---CCcEE--EEecCCCHHHHHHHHHcCCCEEEeC-----CCCHHHHHHHHHHHH
Q 008626 78 GSFKFLETAK---DLPTI--ITSNIHCLSTMMKCIALGAVEFLRK-----PLSEDKLRNLWQHVV 132 (559)
Q Consensus 78 dG~eLLe~Ir---diPVI--mLSa~~d~e~v~kAi~~GA~DYLvK-----Pis~eeL~~iIq~vl 132 (559)
-++++++.+. .+||| ....-...+.+..++++||+++++= .-++.+....+..++
T Consensus 184 ~~~elLkei~~~~~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai 248 (287)
T TIGR00343 184 VPVELLLEVLKLGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEAT 248 (287)
T ss_pred CCHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHH
Confidence 3677777775 69998 6666678999999999999999753 334444444444433
No 189
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=56.49 E-value=73 Score=28.51 Aligned_cols=101 Identities=15% Similarity=0.167 Sum_probs=59.6
Q ss_pred HHHHHHHHHhhCCCEEEE--ECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcEEEEecCCCHHH
Q 008626 29 AAAELKFKLEAMDYIVST--FYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTIITSNIHCLST 102 (559)
Q Consensus 29 ~~~~L~~~L~~~gy~V~t--a~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPVImLSa~~d~e~ 102 (559)
-+..+..+|++.|++|.. ....++.++.+... ..||+|.+-+........+++++.++ +++||+--.... ..
T Consensus 4 gl~~~aa~l~~~g~~v~~~~~~~~~~~~~~~~~~-~~pdiv~~S~~~~~~~~~~~~~~~ik~~~p~~~iv~GG~~~t-~~ 81 (127)
T cd02068 4 GLAYLAAVLEDAGFIVAEHDVLSADDIVEDIKEL-LKPDVVGISLMTSAIYEALELAKIAKEVLPNVIVVVGGPHAT-FF 81 (127)
T ss_pred hHHHHHHHHHHCCCeeeecCCCCHHHHHHHHHHh-cCCCEEEEeeccccHHHHHHHHHHHHHHCCCCEEEECCcchh-hC
Confidence 456788899988887663 33555566666442 47999999886555123455666665 455554332222 22
Q ss_pred HHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Q 008626 103 MMKCIALGAVEFLRKPLSEDKLRNLWQHV 131 (559)
Q Consensus 103 v~kAi~~GA~DYLvKPis~eeL~~iIq~v 131 (559)
-...+..-..||++.---..-|...++.+
T Consensus 82 p~~~~~~~~~D~vv~GEgE~~~~~l~~~l 110 (127)
T cd02068 82 PEEILEEPGVDFVVIGEGEETFLKLLEEL 110 (127)
T ss_pred HHHHhcCCCCCEEEECCcHHHHHHHHHHH
Confidence 22224455668888876655566555543
No 190
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=56.44 E-value=91 Score=29.17 Aligned_cols=73 Identities=16% Similarity=0.126 Sum_probs=48.8
Q ss_pred CCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCC-------CCCHHHHHHHcC---CCcEEEEecCCCHHHHHHHHHc
Q 008626 41 DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSN-------TDGSFKFLETAK---DLPTIITSNIHCLSTMMKCIAL 109 (559)
Q Consensus 41 gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd-------~mdG~eLLe~Ir---diPVImLSa~~d~e~v~kAi~~ 109 (559)
+..+. .+.+..++.+.+.. .+|+|++.-..|. ...+.+.++.++ ++||++..+- ..+.+.+++.+
T Consensus 95 ~~~~g~~~~t~~~~~~~~~~---g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~a~GGi-~~~~i~~~~~~ 170 (196)
T cd00564 95 DLIIGVSTHSLEEALRAEEL---GADYVGFGPVFPTPTKPGAGPPLGLELLREIAELVEIPVVAIGGI-TPENAAEVLAA 170 (196)
T ss_pred CCEEEeeCCCHHHHHHHhhc---CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHHc
Confidence 33443 45667777665544 4899988654332 023567776663 7899888766 46888999999
Q ss_pred CCCEEEeC
Q 008626 110 GAVEFLRK 117 (559)
Q Consensus 110 GA~DYLvK 117 (559)
||+.+.+=
T Consensus 171 Ga~~i~~g 178 (196)
T cd00564 171 GADGVAVI 178 (196)
T ss_pred CCCEEEEe
Confidence 99988653
No 191
>PRK00654 glgA glycogen synthase; Provisional
Probab=56.43 E-value=1e+02 Score=33.82 Aligned_cols=107 Identities=11% Similarity=0.085 Sum_probs=66.1
Q ss_pred CcEEEEEeCC-HHHHHHHHHHHhhCCCEEE--EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CCcEE
Q 008626 17 GLRVLLLDQD-SSAAAELKFKLEAMDYIVS--TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTI 92 (559)
Q Consensus 17 glrVLIVDDD-~~~~~~L~~~L~~~gy~V~--ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-diPVI 92 (559)
..+++|+.+. ......++.+.++.+-.+. .-.+.+.+-.++.. .|++|+--. -+ .-|+-+++.+. .+|+|
T Consensus 311 ~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~g~~~~~~~~~~~~----aDv~v~PS~-~E-~~gl~~lEAma~G~p~V 384 (466)
T PRK00654 311 GGQLVLLGTGDPELEEAFRALAARYPGKVGVQIGYDEALAHRIYAG----ADMFLMPSR-FE-PCGLTQLYALRYGTLPI 384 (466)
T ss_pred CCEEEEEecCcHHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHhh----CCEEEeCCC-CC-CchHHHHHHHHCCCCEE
Confidence 4677887764 3455666666666554433 22233333334443 588887433 34 56788888876 67777
Q ss_pred EEecCCCHHHHHHHHHcC------CCEEEeCCCCHHHHHHHHHHHHH
Q 008626 93 ITSNIHCLSTMMKCIALG------AVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 93 mLSa~~d~e~v~kAi~~G------A~DYLvKPis~eeL~~iIq~vlr 133 (559)
+....+-.+ .+..| .++|+..|-+.++|.+.+..++.
T Consensus 385 ~~~~gG~~e----~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l~ 427 (466)
T PRK00654 385 VRRTGGLAD----TVIDYNPEDGEATGFVFDDFNAEDLLRALRRALE 427 (466)
T ss_pred EeCCCCccc----eeecCCCCCCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 643322222 23445 78999999999999999888764
No 192
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=55.53 E-value=1.2e+02 Score=29.95 Aligned_cols=66 Identities=14% Similarity=0.294 Sum_probs=46.3
Q ss_pred CHHHHHHHhhcCCCCee-EEEEecCCCCCCCH--HHHHHHcC---CCcEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008626 49 NENEALSAFSDKPENFH-VAIVEVTTSNTDGS--FKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (559)
Q Consensus 49 ~~~eAL~~Lre~~~~pD-LVIvDv~MPd~mdG--~eLLe~Ir---diPVImLSa~~d~e~v~kAi~~GA~DYLv 116 (559)
+..+.++.+.+ ...+ +++.|+..-+...| +++++.+. ++|||+-..-.+.+.+.++++.||+++++
T Consensus 147 ~~~~~~~~~~~--~ga~~iii~~~~~~g~~~g~~~~~i~~i~~~~~ipvi~~GGi~~~~di~~~~~~Ga~gv~v 218 (234)
T cd04732 147 SLEELAKRFEE--LGVKAIIYTDISRDGTLSGPNFELYKELAAATGIPVIASGGVSSLDDIKALKELGVAGVIV 218 (234)
T ss_pred CHHHHHHHHHH--cCCCEEEEEeecCCCccCCCCHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHCCCCEEEE
Confidence 44556666655 3344 56677754331222 56777764 79999988888889899999999999886
No 193
>PLN02591 tryptophan synthase
Probab=55.51 E-value=1.4e+02 Score=30.76 Aligned_cols=100 Identities=13% Similarity=0.116 Sum_probs=63.2
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEE-EE-C-CHHHHHHHhhcCCCCeeEEEEecCCCCC-----CCHHHHHHHcC---
Q 008626 19 RVLLLDQDSSAAAELKFKLEAMDYIVS-TF-Y-NENEALSAFSDKPENFHVAIVEVTTSNT-----DGSFKFLETAK--- 87 (559)
Q Consensus 19 rVLIVDDD~~~~~~L~~~L~~~gy~V~-ta-~-~~~eAL~~Lre~~~~pDLVIvDv~MPd~-----mdG~eLLe~Ir--- 87 (559)
-|||.|-...-...+...+++.|...+ .+ . +.++=++.+.+....|=.+|.=....+. .+..++++.++
T Consensus 109 GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~ 188 (250)
T PLN02591 109 GLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEVT 188 (250)
T ss_pred EEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcC
Confidence 477778777777888888888887655 33 2 3233344454422334333331211110 12244566665
Q ss_pred CCcEEEEecCCCHHHHHHHHHcCCCEEEeCC
Q 008626 88 DLPTIITSNIHCLSTMMKCIALGAVEFLRKP 118 (559)
Q Consensus 88 diPVImLSa~~d~e~v~kAi~~GA~DYLvKP 118 (559)
++||++=.+-.+.+.+.+..+.||++.++-.
T Consensus 189 ~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGS 219 (250)
T PLN02591 189 DKPVAVGFGISKPEHAKQIAGWGADGVIVGS 219 (250)
T ss_pred CCceEEeCCCCCHHHHHHHHhcCCCEEEECH
Confidence 7999887777789999999999999999864
No 194
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=55.43 E-value=49 Score=33.33 Aligned_cols=65 Identities=17% Similarity=0.290 Sum_probs=49.9
Q ss_pred CHHHHHHHhhcCCCCe-eEEEEecCCCCCCCH--HHHHHHcC---CCcEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008626 49 NENEALSAFSDKPENF-HVAIVEVTTSNTDGS--FKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (559)
Q Consensus 49 ~~~eAL~~Lre~~~~p-DLVIvDv~MPd~mdG--~eLLe~Ir---diPVImLSa~~d~e~v~kAi~~GA~DYLv 116 (559)
+..++++.+.. . + .++++|+..-+.+.| +++++.+. .+|||+-.+-.+.+.+.+++..||+..++
T Consensus 147 ~~~~~~~~~~~--~-~~~li~~di~~~G~~~g~~~~~~~~i~~~~~ipvi~~GGi~s~edi~~l~~~G~~~viv 217 (233)
T cd04723 147 GPEELLRRLAK--W-PEELIVLDIDRVGSGQGPDLELLERLAARADIPVIAAGGVRSVEDLELLKKLGASGALV 217 (233)
T ss_pred CHHHHHHHHHH--h-CCeEEEEEcCccccCCCcCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 36667777766 5 5 599999976552333 56666664 78999888899999999999999999886
No 195
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=55.34 E-value=38 Score=31.87 Aligned_cols=53 Identities=19% Similarity=0.216 Sum_probs=44.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC----CHHHHHHHhhcCCCCeeEEEEecCCCC
Q 008626 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFY----NENEALSAFSDKPENFHVAIVEVTTSN 75 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~----~~~eAL~~Lre~~~~pDLVIvDv~MPd 75 (559)
.+.+|+|+.......+-|..+|.+.|+.|+.|. +.+++ +++ -|+|++-+.-+.
T Consensus 27 ~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~---v~~----ADIVvsAtg~~~ 83 (140)
T cd05212 27 DGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSK---VHD----ADVVVVGSPKPE 83 (140)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHH---Hhh----CCEEEEecCCCC
Confidence 578999999999999999999999999999888 44443 333 699999887665
No 196
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=55.16 E-value=1.1e+02 Score=30.88 Aligned_cols=106 Identities=16% Similarity=0.171 Sum_probs=64.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCC--EEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CCcEEE
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAMDY--IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTII 93 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy--~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-diPVIm 93 (559)
.++++|+.+-+. ...++..++..+. .|......++..+.+.. .|++++-... + .-|+.+++.+. .+|||+
T Consensus 223 ~~~l~ivG~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----adi~v~ps~~-E-~~~~~~lEAma~G~PvI~ 295 (358)
T cd03812 223 NAKLLLVGDGEL-EEEIKKKVKELGLEDKVIFLGVRNDVPELLQA----MDVFLFPSLY-E-GLPLVLIEAQASGLPCIL 295 (358)
T ss_pred CeEEEEEeCCch-HHHHHHHHHhcCCCCcEEEecccCCHHHHHHh----cCEEEecccc-c-CCCHHHHHHHHhCCCEEE
Confidence 467778876543 3445555554432 34433333444445544 5777764433 3 45788888875 899986
Q ss_pred EecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008626 94 TSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 94 LSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
.......+ .+.. ...|+..+-+.+++.++|..++..
T Consensus 296 s~~~~~~~----~i~~-~~~~~~~~~~~~~~a~~i~~l~~~ 331 (358)
T cd03812 296 SDTITKEV----DLTD-LVKFLSLDESPEIWAEEILKLKSE 331 (358)
T ss_pred EcCCchhh----hhcc-CccEEeCCCCHHHHHHHHHHHHhC
Confidence 44433322 3444 457787777889999998887753
No 197
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=54.87 E-value=1.2e+02 Score=31.95 Aligned_cols=91 Identities=11% Similarity=0.055 Sum_probs=65.4
Q ss_pred EEEEEeCCHHHH--H--HHHHHHh----hCCC---EEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC
Q 008626 19 RVLLLDQDSSAA--A--ELKFKLE----AMDY---IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK 87 (559)
Q Consensus 19 rVLIVDDD~~~~--~--~L~~~L~----~~gy---~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir 87 (559)
.|||-|.+-... . .+...+. ..++ ..+.+.+.+++.+.+.. .+|+|++|=.-|+ +--++++.++
T Consensus 161 ~vLikdNHi~~~~~g~~~i~~av~~~r~~~~~~~kIeVEv~slee~~ea~~~---gaDiImLDn~s~e--~l~~av~~~~ 235 (281)
T PRK06543 161 AVMAKDNHLAALAAQGLDLTEALRHVRAQLGHTTHVEVEVDRLDQIEPVLAA---GVDTIMLDNFSLD--DLREGVELVD 235 (281)
T ss_pred eEEEeHHHHHHHhCCchHHHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHhc---CCCEEEECCCCHH--HHHHHHHHhC
Confidence 488878776643 1 3445443 3443 34589999999998866 5899999976555 4445566666
Q ss_pred CCcEEEEecCCCHHHHHHHHHcCCCEE
Q 008626 88 DLPTIITSNIHCLSTMMKCIALGAVEF 114 (559)
Q Consensus 88 diPVImLSa~~d~e~v~kAi~~GA~DY 114 (559)
...+|-.|+.-+.+.+.+....|++-.
T Consensus 236 ~~~~leaSGgI~~~ni~~yA~tGVD~I 262 (281)
T PRK06543 236 GRAIVEASGNVNLNTVGAIASTGVDVI 262 (281)
T ss_pred CCeEEEEECCCCHHHHHHHHhcCCCEE
Confidence 666888999999999999999998744
No 198
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=54.86 E-value=46 Score=29.10 Aligned_cols=50 Identities=14% Similarity=0.134 Sum_probs=39.5
Q ss_pred eCCHHHHHHHHHHHhhCCCEEEEEC---CHHHHHHHhhcCCCCeeEEEEecCCCC
Q 008626 24 DQDSSAAAELKFKLEAMDYIVSTFY---NENEALSAFSDKPENFHVAIVEVTTSN 75 (559)
Q Consensus 24 DDD~~~~~~L~~~L~~~gy~V~ta~---~~~eAL~~Lre~~~~pDLVIvDv~MPd 75 (559)
|.+..-...+..+|++.||++.... ..++.++.+.+ ..||+|.+-+.+..
T Consensus 10 ~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~~i~~--~~pdiV~iS~~~~~ 62 (125)
T cd02065 10 DVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVEAAKE--EDADVVGLSALSTT 62 (125)
T ss_pred chhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHHH--cCCCEEEEecchHh
Confidence 5666677788899999999988443 66777777777 78999999887765
No 199
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=54.84 E-value=91 Score=34.84 Aligned_cols=57 Identities=14% Similarity=0.177 Sum_probs=37.4
Q ss_pred CCcEEEEEeCCHHH---HHHHHHHHhhCCCEEEEECCHHHHHHHhhcCC--CCeeEEEEecC
Q 008626 16 KGLRVLLLDQDSSA---AAELKFKLEAMDYIVSTFYNENEALSAFSDKP--ENFHVAIVEVT 72 (559)
Q Consensus 16 ~glrVLIVDDD~~~---~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~--~~pDLVIvDv~ 72 (559)
.+.+|++++-|+.- .+.|...-...|+.+..+.+..+..+.|...+ ..+|+||+|.-
T Consensus 268 ~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTa 329 (436)
T PRK11889 268 KKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTA 329 (436)
T ss_pred cCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeCc
Confidence 35689999988653 33444444456888877777666655554311 25899999973
No 200
>PRK14974 cell division protein FtsY; Provisional
Probab=54.62 E-value=1.1e+02 Score=32.80 Aligned_cols=97 Identities=13% Similarity=0.210 Sum_probs=51.4
Q ss_pred CCcEEEEEeCCH---HHHHHHHHHHhhCCCEEEEECC-------HHHHHHHhhcCCCCeeEEEEecCCCCCC-CHHHHHH
Q 008626 16 KGLRVLLLDQDS---SAAAELKFKLEAMDYIVSTFYN-------ENEALSAFSDKPENFHVAIVEVTTSNTD-GSFKFLE 84 (559)
Q Consensus 16 ~glrVLIVDDD~---~~~~~L~~~L~~~gy~V~ta~~-------~~eAL~~Lre~~~~pDLVIvDv~MPd~m-dG~eLLe 84 (559)
.+.+|++++.|. ...+.|.......|..+..... ..+|++.+.. ..+|+||+|.. .. + .-..++.
T Consensus 167 ~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~~--~~~DvVLIDTa-Gr-~~~~~~lm~ 242 (336)
T PRK14974 167 NGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKA--RGIDVVLIDTA-GR-MHTDANLMD 242 (336)
T ss_pred cCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHHh--CCCCEEEEECC-Cc-cCCcHHHHH
Confidence 357898888873 3334455555666766653322 1244555555 56899999984 11 1 1222332
Q ss_pred Hc--------CCCcEEEEecCCCHHHHH--HHH--HcCCCEEEe
Q 008626 85 TA--------KDLPTIITSNIHCLSTMM--KCI--ALGAVEFLR 116 (559)
Q Consensus 85 ~I--------rdiPVImLSa~~d~e~v~--kAi--~~GA~DYLv 116 (559)
.+ .+.-++++++....+.+. +.+ ..|++.+++
T Consensus 243 eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIl 286 (336)
T PRK14974 243 ELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVIL 286 (336)
T ss_pred HHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcCCCCEEEE
Confidence 22 145566666654433332 222 256666644
No 201
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=54.55 E-value=1e+02 Score=32.47 Aligned_cols=92 Identities=13% Similarity=0.064 Sum_probs=64.6
Q ss_pred EEEEEeCCHHHHHHHHHHHhhC----C-C-EEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-----
Q 008626 19 RVLLLDQDSSAAAELKFKLEAM----D-Y-IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----- 87 (559)
Q Consensus 19 rVLIVDDD~~~~~~L~~~L~~~----g-y-~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----- 87 (559)
.|||-|++.... .+...+... . . ..+.+.+.++|.+.+.. ..|+|++|-..|+ +--++.+.++
T Consensus 156 ~vLikdnHi~~~-~i~~av~~~r~~~~~~kIeVEv~~leea~~a~~a---gaDiI~LDn~~~e--~l~~~v~~l~~~~~~ 229 (278)
T PRK08385 156 AILIKDNHLALV-PLEEAIRRAKEFSVYKVVEVEVESLEDALKAAKA---GADIIMLDNMTPE--EIREVIEALKREGLR 229 (278)
T ss_pred cEEEccCHHHHH-HHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHc---CcCEEEECCCCHH--HHHHHHHHHHhcCcC
Confidence 388888887665 566666432 1 2 34488999999999876 5799999986655 3333444442
Q ss_pred CCcEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008626 88 DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (559)
Q Consensus 88 diPVImLSa~~d~e~v~kAi~~GA~DYLv 116 (559)
.-..|..|+.-+.+.+.+..+.|++-+-+
T Consensus 230 ~~~~leaSGGI~~~ni~~yA~tGvD~Is~ 258 (278)
T PRK08385 230 ERVKIEVSGGITPENIEEYAKLDVDVISL 258 (278)
T ss_pred CCEEEEEECCCCHHHHHHHHHcCCCEEEe
Confidence 23457778888999999999999886543
No 202
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=54.55 E-value=1.9e+02 Score=28.84 Aligned_cols=104 Identities=11% Similarity=0.065 Sum_probs=62.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhh---CCCEEEEEC--CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CCc
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEA---MDYIVSTFY--NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLP 90 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~---~gy~V~ta~--~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-diP 90 (559)
+.+++|+.+..... .+...+.. .+-.|.... +..+..+.+.. .|++++=....+ .-|+.+++.+. .+|
T Consensus 197 ~~~l~i~G~~~~~~-~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~----~d~~v~ps~~~E-~~~~~~lEAma~G~P 270 (335)
T cd03802 197 GIPLKLAGPVSDPD-YFYREIAPELLDGPDIEYLGEVGGAEKAELLGN----ARALLFPILWEE-PFGLVMIEAMACGTP 270 (335)
T ss_pred CCeEEEEeCCCCHH-HHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHh----CcEEEeCCcccC-CcchHHHHHHhcCCC
Confidence 35777777653221 22222221 122333332 34555666655 578877554445 56888888875 899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 008626 91 TIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVV 132 (559)
Q Consensus 91 VImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vl 132 (559)
||..-...- .+.+..|.++|+..+ .++|.+.+..+.
T Consensus 271 vI~~~~~~~----~e~i~~~~~g~l~~~--~~~l~~~l~~l~ 306 (335)
T cd03802 271 VIAFRRGAV----PEVVEDGVTGFLVDS--VEELAAAVARAD 306 (335)
T ss_pred EEEeCCCCc----hhheeCCCcEEEeCC--HHHHHHHHHHHh
Confidence 885433322 244677889999987 888888887664
No 203
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=54.31 E-value=72 Score=35.78 Aligned_cols=104 Identities=11% Similarity=0.064 Sum_probs=65.8
Q ss_pred CHHHHHHHHHHHhhCC-CEEEEEC------CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcEEEE
Q 008626 26 DSSAAAELKFKLEAMD-YIVSTFY------NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTIIT 94 (559)
Q Consensus 26 D~~~~~~L~~~L~~~g-y~V~ta~------~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPVImL 94 (559)
-|.-+..|...|+..| ++|..+. +.++..+.|++ ..||+|.+-...+......++++.++ +++|| +
T Consensus 21 pPlgl~~lAa~L~~~G~~~V~iiD~~~~~~~~~~~~~~l~~--~~pdvVgis~~t~~~~~a~~~~~~~k~~~P~~~iV-~ 97 (497)
T TIGR02026 21 PPLWVAYIGGALLDAGYHDVTFLDAMTGPLTDEKLVERLRA--HCPDLVLITAITPAIYIACETLKFARERLPNAIIV-L 97 (497)
T ss_pred CCHHHHHHHHHHHhcCCcceEEecccccCCCHHHHHHHHHh--cCcCEEEEecCcccHHHHHHHHHHHHHHCCCCEEE-E
Confidence 4667788999999999 5777543 33455566777 78999999775554122456666665 55555 4
Q ss_pred ecCCCHHHHHHHHH-cCCCEEEeCCCCHHHHHHHHHHHH
Q 008626 95 SNIHCLSTMMKCIA-LGAVEFLRKPLSEDKLRNLWQHVV 132 (559)
Q Consensus 95 Sa~~d~e~v~kAi~-~GA~DYLvKPis~eeL~~iIq~vl 132 (559)
-+..-...-.+++. ....||++.--..+.|.+.++.+.
T Consensus 98 GG~h~t~~~~~~l~~~p~vD~Vv~GEGE~~~~~Ll~~l~ 136 (497)
T TIGR02026 98 GGIHPTFMFHQVLTEAPWIDFIVRGEGEETVVKLIAALE 136 (497)
T ss_pred cCCCcCcCHHHHHhcCCCccEEEeCCcHHHHHHHHHHHH
Confidence 43332222334453 456789998877777777666543
No 204
>PRK13566 anthranilate synthase; Provisional
Probab=54.12 E-value=31 Score=40.76 Aligned_cols=76 Identities=18% Similarity=0.159 Sum_probs=49.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEe--cCCCCCCCHHHHHHHcC--CCcE
Q 008626 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVE--VTTSNTDGSFKFLETAK--DLPT 91 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvD--v~MPd~mdG~eLLe~Ir--diPV 91 (559)
.+++|||||........|.++|++.|++|+.+..... .+.+.. ..||.||+- ...|...+-.++++.+. ++||
T Consensus 525 ~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~-~~~~~~--~~~DgVVLsgGpgsp~d~~~~~lI~~a~~~~iPI 601 (720)
T PRK13566 525 EGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFA-EEMLDR--VNPDLVVLSPGPGRPSDFDCKATIDAALARNLPI 601 (720)
T ss_pred CCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCC-hhHhhh--cCCCEEEECCCCCChhhCCcHHHHHHHHHCCCcE
Confidence 5689999999888889999999999999886665432 233333 468987762 11111022345555542 7898
Q ss_pred EEE
Q 008626 92 IIT 94 (559)
Q Consensus 92 ImL 94 (559)
+-+
T Consensus 602 LGI 604 (720)
T PRK13566 602 FGV 604 (720)
T ss_pred EEE
Confidence 765
No 205
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=53.84 E-value=42 Score=35.88 Aligned_cols=62 Identities=18% Similarity=0.218 Sum_probs=48.4
Q ss_pred EEEEEeCCHHHHHHHHHHHhh--CCC---EEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHH
Q 008626 19 RVLLLDQDSSAAAELKFKLEA--MDY---IVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFL 83 (559)
Q Consensus 19 rVLIVDDD~~~~~~L~~~L~~--~gy---~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLL 83 (559)
.|+++|-|..+.+.=+.+|.. +|| +|. ...+|...++.+.+ +.+|+||+|..-|. +.+..+-
T Consensus 147 ~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~--~~~dVii~dssdpv-gpa~~lf 214 (337)
T KOG1562|consen 147 NILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKE--NPFDVIITDSSDPV-GPACALF 214 (337)
T ss_pred ceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhcc--CCceEEEEecCCcc-chHHHHH
Confidence 477888888888888888874 477 344 56699999998887 78999999999888 7775443
No 206
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=53.42 E-value=1.4e+02 Score=32.56 Aligned_cols=107 Identities=13% Similarity=0.096 Sum_probs=64.3
Q ss_pred cEEEEEeCC-HHHHHHHHHHHhhCCCEEE--EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CCcEEE
Q 008626 18 LRVLLLDQD-SSAAAELKFKLEAMDYIVS--TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTII 93 (559)
Q Consensus 18 lrVLIVDDD-~~~~~~L~~~L~~~gy~V~--ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-diPVIm 93 (559)
.+++|+.+- +...+.++.+..+.+-.+. ..-+.+++..++.. .|++|+=-. -+ .-|+.+++.+. .+|+|+
T Consensus 321 ~~lvi~G~g~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~----aDv~l~pS~-~E-~~gl~~lEAma~G~pvI~ 394 (473)
T TIGR02095 321 GQLVVLGTGDPELEEALRELAERYPGNVRVIIGYDEALAHLIYAG----ADFILMPSR-FE-PCGLTQLYAMRYGTVPIV 394 (473)
T ss_pred cEEEEECCCCHHHHHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHh----CCEEEeCCC-cC-CcHHHHHHHHHCCCCeEE
Confidence 677777655 3444555555554443333 22233444444444 577776432 23 45777777775 788775
Q ss_pred EecCCCHHHHHHHHHcC------CCEEEeCCCCHHHHHHHHHHHHHH
Q 008626 94 TSNIHCLSTMMKCIALG------AVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 94 LSa~~d~e~v~kAi~~G------A~DYLvKPis~eeL~~iIq~vlrr 134 (559)
- ..+.. .+.+..| .++|+..|.+.++|.+.+..++..
T Consensus 395 s-~~gg~---~e~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~l~~ 437 (473)
T TIGR02095 395 R-RTGGL---ADTVVDGDPEAESGTGFLFEEYDPGALLAALSRALRL 437 (473)
T ss_pred c-cCCCc---cceEecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHH
Confidence 3 33322 2233445 889999999999999999887753
No 207
>PLN02775 Probable dihydrodipicolinate reductase
Probab=53.25 E-value=2e+02 Score=30.42 Aligned_cols=100 Identities=10% Similarity=0.102 Sum_probs=59.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEE----------------------E--CCHHHHHHHhhcCCCCeeEEEEecCC
Q 008626 18 LRVLLLDQDSSAAAELKFKLEAMDYIVST----------------------F--YNENEALSAFSDKPENFHVAIVEVTT 73 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~t----------------------a--~~~~eAL~~Lre~~~~pDLVIvDv~M 73 (559)
++|+|..----.-+.+.+.+...+++++- + .+.+++|..+.. ..+|+|++|+..
T Consensus 12 i~V~V~Ga~G~MG~~~~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~~~~~~dl~~~l~~~~~--~~~~~VvIDFT~ 89 (286)
T PLN02775 12 IPIMVNGCTGKMGHAVAEAAVSAGLQLVPVSFTGPAGVGVTVEVCGVEVRLVGPSEREAVLSSVKA--EYPNLIVVDYTL 89 (286)
T ss_pred CeEEEECCCChHHHHHHHHHhcCCCEEEEEeccccccccccceeccceeeeecCccHHHHHHHhhc--cCCCEEEEECCC
Confidence 68888877766666665555445555442 2 455566655544 469999999999
Q ss_pred CCCCCHHHHHHHcC--CCcEEEEecCCCHHHHHHHHHc-CCCEEEeCCCCH
Q 008626 74 SNTDGSFKFLETAK--DLPTIITSNIHCLSTMMKCIAL-GAVEFLRKPLSE 121 (559)
Q Consensus 74 Pd~mdG~eLLe~Ir--diPVImLSa~~d~e~v~kAi~~-GA~DYLvKPis~ 121 (559)
|+ ...+.++... .+|+|+=|.--+.+.+.+..+. +.--++.-.++.
T Consensus 90 P~--a~~~~~~~~~~~g~~~VvGTTG~~~e~l~~~~~~~~i~vv~apNfSi 138 (286)
T PLN02775 90 PD--AVNDNAELYCKNGLPFVMGTTGGDRDRLLKDVEESGVYAVIAPQMGK 138 (286)
T ss_pred hH--HHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhcCCccEEEECcccH
Confidence 98 3444555442 6777766654444444333333 444445545554
No 208
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=53.19 E-value=1.1e+02 Score=34.88 Aligned_cols=98 Identities=15% Similarity=0.194 Sum_probs=62.6
Q ss_pred CCcEEEEEeCCHH---HHHHHHHHHhh-C-CCEEE--EECCHHHHHHHhhcCCCCeeEEEEecCC--------------C
Q 008626 16 KGLRVLLLDQDSS---AAAELKFKLEA-M-DYIVS--TFYNENEALSAFSDKPENFHVAIVEVTT--------------S 74 (559)
Q Consensus 16 ~glrVLIVDDD~~---~~~~L~~~L~~-~-gy~V~--ta~~~~eAL~~Lre~~~~pDLVIvDv~M--------------P 74 (559)
.+..|+++|-..- ....+.+.|++ + +..|+ .+.+.++|..++.. .+|.|.+-++- |
T Consensus 259 ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~a---GaD~i~vg~g~G~~~~t~~~~~~g~~ 335 (505)
T PLN02274 259 AGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQA---GVDGLRVGMGSGSICTTQEVCAVGRG 335 (505)
T ss_pred cCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHc---CcCEEEECCCCCccccCccccccCCC
Confidence 3567888874321 11122333333 3 34443 57888998888765 58888774311 1
Q ss_pred CCCCHHHHHHHcC---CCcEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008626 75 NTDGSFKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (559)
Q Consensus 75 d~mdG~eLLe~Ir---diPVImLSa~~d~e~v~kAi~~GA~DYLvK 117 (559)
. ...+..+..+. ++|||+=..-.....+.+|+.+||+.+++=
T Consensus 336 ~-~~~i~~~~~~~~~~~vpVIadGGI~~~~di~kAla~GA~~V~vG 380 (505)
T PLN02274 336 Q-ATAVYKVASIAAQHGVPVIADGGISNSGHIVKALTLGASTVMMG 380 (505)
T ss_pred c-ccHHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 1 22333344442 699999999999999999999999998864
No 209
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=53.08 E-value=1.5e+02 Score=28.82 Aligned_cols=63 Identities=13% Similarity=0.048 Sum_probs=43.1
Q ss_pred eeEEEEecCCCCCCCHHHHHHHcC-CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 008626 64 FHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVV 132 (559)
Q Consensus 64 pDLVIvDv~MPd~mdG~eLLe~Ir-diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vl 132 (559)
.|++|.-... + .-|..+++.+. .+|||+. ... ...+.+..|..+|+..+-+.+++..++..+.
T Consensus 264 ~d~~i~ps~~-e-~~~~~~~Ea~~~G~PvI~~-~~~---~~~e~i~~~~~g~~~~~~~~~~~~~~~~~i~ 327 (353)
T cd03811 264 ADLFVLSSRY-E-GFPNVLLEAMALGTPVVAT-DCP---GPREILEDGENGLLVPVGDEAALAAAALALL 327 (353)
T ss_pred CCEEEeCccc-C-CCCcHHHHHHHhCCCEEEc-CCC---ChHHHhcCCCceEEECCCCHHHHHHHHHHHH
Confidence 4666664433 3 44677888875 8998753 333 3345678899999999999999876555443
No 210
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=53.05 E-value=1.1e+02 Score=28.10 Aligned_cols=54 Identities=20% Similarity=0.178 Sum_probs=38.4
Q ss_pred CCeeEEEEecCCCCCCCH-------HHHHHHcC---CCcEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008626 62 ENFHVAIVEVTTSNTDGS-------FKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (559)
Q Consensus 62 ~~pDLVIvDv~MPd~mdG-------~eLLe~Ir---diPVImLSa~~d~e~v~kAi~~GA~DYLv 116 (559)
...|.|.++-..+. ..+ ...+..++ .+||++..+-...+.+.++++.||+.+.+
T Consensus 135 ~g~d~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~v 198 (200)
T cd04722 135 AGVDEVGLGNGGGG-GGGRDAVPIADLLLILAKRGSKVPVIAGGGINDPEDAAEALALGADGVIV 198 (200)
T ss_pred cCCCEEEEcCCcCC-CCCccCchhHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHhCCCEEEe
Confidence 45788888877665 322 12333332 79999888777778899999999998764
No 211
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=53.03 E-value=81 Score=32.88 Aligned_cols=96 Identities=14% Similarity=0.180 Sum_probs=57.8
Q ss_pred cEEEEEe--CC---HHHHHHHHHHHhhCCCEEEEECCHHHHHH--------HhhcCCCCeeEEEEecCCCCCCCH--HHH
Q 008626 18 LRVLLLD--QD---SSAAAELKFKLEAMDYIVSTFYNENEALS--------AFSDKPENFHVAIVEVTTSNTDGS--FKF 82 (559)
Q Consensus 18 lrVLIVD--DD---~~~~~~L~~~L~~~gy~V~ta~~~~eAL~--------~Lre~~~~pDLVIvDv~MPd~mdG--~eL 82 (559)
|||.||- .. ......+..+|+..|++|.......+.+. .+.. ..+|+||+ + + +|| ++.
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~--~~~d~vi~---i-G-GDGTlL~a 73 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEE--MDVDFIIA---I-G-GDGTILRI 73 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccccccc--cCCCEEEE---E-e-CcHHHHHH
Confidence 4677772 22 23445566677778888886543222211 1111 35788777 2 3 577 344
Q ss_pred HHHcC--CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008626 83 LETAK--DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (559)
Q Consensus 83 Le~Ir--diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~ 135 (559)
++ +. ++||+.+.. |=.+||. .++.+++...+..+++..
T Consensus 74 ~~-~~~~~~pi~gIn~-------------G~lGFl~-~~~~~~~~~~l~~i~~g~ 113 (277)
T PRK03708 74 EH-KTKKDIPILGINM-------------GTLGFLT-EVEPEETFFALSRLLEGD 113 (277)
T ss_pred HH-hcCCCCeEEEEeC-------------CCCCccc-cCCHHHHHHHHHHHHcCC
Confidence 55 33 789887764 3346665 678899998888887654
No 212
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=52.84 E-value=1.5e+02 Score=29.05 Aligned_cols=64 Identities=16% Similarity=0.209 Sum_probs=44.1
Q ss_pred eeEEEEecCCCCCCCHHHHHHHcC-CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008626 64 FHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 64 pDLVIvDv~MPd~mdG~eLLe~Ir-diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
.|++|+-... + .-|..+++.+. .+|||+ |.... ..+.+..|..+++..+-+.+++.+.+..++.
T Consensus 264 adi~i~ps~~-e-~~~~~~~Ea~~~G~Pvi~-s~~~~---~~~~i~~~~~g~~~~~~~~~~~~~~i~~l~~ 328 (359)
T cd03808 264 ADVFVLPSYR-E-GLPRVLLEAMAMGRPVIA-TDVPG---CREAVIDGVNGFLVPPGDAEALADAIERLIE 328 (359)
T ss_pred ccEEEecCcc-c-CcchHHHHHHHcCCCEEE-ecCCC---chhhhhcCcceEEECCCCHHHHHHHHHHHHh
Confidence 4666654333 3 45777888775 899886 43332 2344566888999999999999999887653
No 213
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=52.80 E-value=1.6e+02 Score=31.37 Aligned_cols=100 Identities=25% Similarity=0.347 Sum_probs=61.4
Q ss_pred cEEEEEe--CCH---HHHHHHHHHHhhCCCEEEEECCHHHHHHH----h------------hcCCCCeeEEEEecCCCCC
Q 008626 18 LRVLLLD--QDS---SAAAELKFKLEAMDYIVSTFYNENEALSA----F------------SDKPENFHVAIVEVTTSNT 76 (559)
Q Consensus 18 lrVLIVD--DD~---~~~~~L~~~L~~~gy~V~ta~~~~eAL~~----L------------re~~~~pDLVIvDv~MPd~ 76 (559)
.+|+||- +.+ .....|...|...|++|.........+.. + ......+|+||+ + +
T Consensus 6 ~~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~---l-G- 80 (306)
T PRK03372 6 RRVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDAADGCELVLV---L-G- 80 (306)
T ss_pred cEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhcccCCCEEEE---E-c-
Confidence 4688873 223 33456666777789888866543332210 0 111124688777 2 3
Q ss_pred CCH--HHHHHHcC--CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008626 77 DGS--FKFLETAK--DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 136 (559)
Q Consensus 77 mdG--~eLLe~Ir--diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~ 136 (559)
+|| +..++.+. ++||+-+. .|=.+||.- +..+++...++.+++...
T Consensus 81 GDGT~L~aar~~~~~~~PilGIN-------------~G~lGFL~~-~~~~~~~~~l~~i~~g~y 130 (306)
T PRK03372 81 GDGTILRAAELARAADVPVLGVN-------------LGHVGFLAE-AEAEDLDEAVERVVDRDY 130 (306)
T ss_pred CCHHHHHHHHHhccCCCcEEEEe-------------cCCCceecc-CCHHHHHHHHHHHHcCCc
Confidence 577 44455443 68988664 377788884 888999999988887643
No 214
>PF13941 MutL: MutL protein
Probab=52.80 E-value=2.5e+02 Score=31.70 Aligned_cols=118 Identities=14% Similarity=0.162 Sum_probs=73.0
Q ss_pred CCcEEEEEeCCHHHH-HHHHHHHhhCCCEEE---EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHH---HHc--
Q 008626 16 KGLRVLLLDQDSSAA-AELKFKLEAMDYIVS---TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFL---ETA-- 86 (559)
Q Consensus 16 ~glrVLIVDDD~~~~-~~L~~~L~~~gy~V~---ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLL---e~I-- 86 (559)
.++|+.++.=-+.+- +.-++.-...|-.|. ...-.++-++.|++ -+||+||+-=...+ .+.--++ +.|
T Consensus 75 GGLrmvv~Glv~~~Ta~AAk~AAlgAGA~V~~v~s~~l~~~~l~~i~~--~~PDiILLaGGtDg-G~~~~il~nA~~La~ 151 (457)
T PF13941_consen 75 GGLRMVVIGLVPDLTAEAAKRAALGAGARVLQVYSYELTEEDLEEIRE--IRPDIILLAGGTDG-GNKEVILHNAEMLAE 151 (457)
T ss_pred CcceEEEEecCHHHHHHHHHHHHhcCCcEEEEEeccCCCHHHHHHHhc--cCCCEEEEeCCccC-CchHHHHHHHHHHHh
Confidence 368888887555443 333333344465544 44556677788888 78999999433322 2322222 333
Q ss_pred -C-CCcEEEEecCCCHHHHHHHHH-cCCCEEEeCCC-------CHHHHHHHHHHHHHHHH
Q 008626 87 -K-DLPTIITSNIHCLSTMMKCIA-LGAVEFLRKPL-------SEDKLRNLWQHVVHKAF 136 (559)
Q Consensus 87 -r-diPVImLSa~~d~e~v~kAi~-~GA~DYLvKPi-------s~eeL~~iIq~vlrr~~ 136 (559)
. .+|||+--...-.+.+.+.+. .|..-|++-.+ +.+-.+.+|+.++.+..
T Consensus 152 ~~~~~pVIyAGN~~a~~~v~~il~~~~~~~~~~~NV~P~i~~ln~~paR~~I~~~F~~~I 211 (457)
T PF13941_consen 152 ANLRIPVIYAGNKAAQDEVEEILEKAGKEVVITENVMPKIDVLNVEPAREAIREVFLRHI 211 (457)
T ss_pred CCCCCcEEEECCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCCcChHHHHHHHHHHHHHHH
Confidence 2 689887777677777888888 66666666543 45666777777766544
No 215
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=52.35 E-value=47 Score=34.87 Aligned_cols=93 Identities=12% Similarity=0.126 Sum_probs=61.4
Q ss_pred EEEEEeCCHHHHH---HHHHHHh----hC--CCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC--
Q 008626 19 RVLLLDQDSSAAA---ELKFKLE----AM--DYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-- 87 (559)
Q Consensus 19 rVLIVDDD~~~~~---~L~~~L~----~~--gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-- 87 (559)
.|||-|++..... .+...+. .. ....+.+.+.++|.+.+.. .+|+|++|- |+- .+-.+.++.++
T Consensus 158 ~ilikdnHi~~~g~~~~i~~av~~~r~~~~~~kIeVEv~tleea~ea~~~---GaDiI~lDn-~~~-e~l~~~v~~l~~~ 232 (277)
T TIGR01334 158 TLLVFANHRTFLNDNFDWGGAIGRLKQTAPERKITVEADTIEQALTVLQA---SPDILQLDK-FTP-QQLHHLHERLKFF 232 (277)
T ss_pred hheehHHHHHHhCCcccHHHHHHHHHHhCCCCCEEEECCCHHHHHHHHHc---CcCEEEECC-CCH-HHHHHHHHHHhcc
Confidence 3677777655543 3444443 22 1234578899999999876 589999994 433 24455555553
Q ss_pred -CCcEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008626 88 -DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (559)
Q Consensus 88 -diPVImLSa~~d~e~v~kAi~~GA~DYLv 116 (559)
.-.+|-.|+.-+.+.+.+....|++-+.+
T Consensus 233 ~~~~~leasGGI~~~ni~~ya~~GvD~is~ 262 (277)
T TIGR01334 233 DHIPTLAAAGGINPENIADYIEAGIDLFIT 262 (277)
T ss_pred CCCEEEEEECCCCHHHHHHHHhcCCCEEEe
Confidence 23456778888999999999999876543
No 216
>PRK04148 hypothetical protein; Provisional
Probab=52.01 E-value=62 Score=30.44 Aligned_cols=94 Identities=14% Similarity=0.086 Sum_probs=61.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEEEEec
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSN 96 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVImLSa 96 (559)
+.+||+|.-- ..-.+...|.+.|++|+.+..-.+|++.+++ ...+++..|+.-|+ ++-.+ +.-+ +.|-
T Consensus 17 ~~kileIG~G--fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~--~~~~~v~dDlf~p~-~~~y~------~a~l-iysi 84 (134)
T PRK04148 17 NKKIVELGIG--FYFKVAKKLKESGFDVIVIDINEKAVEKAKK--LGLNAFVDDLFNPN-LEIYK------NAKL-IYSI 84 (134)
T ss_pred CCEEEEEEec--CCHHHHHHHHHCCCEEEEEECCHHHHHHHHH--hCCeEEECcCCCCC-HHHHh------cCCE-EEEe
Confidence 4789998876 3334666777889999988888889998888 56899999999888 43322 2222 3444
Q ss_pred CCCHHHHHH----HHHcCCCEEEeCCCCHHH
Q 008626 97 IHCLSTMMK----CIALGAVEFLRKPLSEDK 123 (559)
Q Consensus 97 ~~d~e~v~k----Ai~~GA~DYLvKPis~ee 123 (559)
+...+...- |-+.|| |++++|+.-++
T Consensus 85 rpp~el~~~~~~la~~~~~-~~~i~~l~~e~ 114 (134)
T PRK04148 85 RPPRDLQPFILELAKKINV-PLIIKPLSGEE 114 (134)
T ss_pred CCCHHHHHHHHHHHHHcCC-CEEEEcCCCCC
Confidence 444443322 233444 45666776554
No 217
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=51.57 E-value=83 Score=29.67 Aligned_cols=74 Identities=7% Similarity=0.008 Sum_probs=38.7
Q ss_pred CcEEEEE--eCCHHHHHHHHHHHhhC--CCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC--CCc
Q 008626 17 GLRVLLL--DQDSSAAAELKFKLEAM--DYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLP 90 (559)
Q Consensus 17 glrVLIV--DDD~~~~~~L~~~L~~~--gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir--diP 90 (559)
.++|+|. |.+......+...|... ||.+.....-.++|+... .-.+..| +.-+. .+.-+++..|+ .+-
T Consensus 4 ~~~v~lsv~d~dK~~l~~~a~~l~~ll~Gf~l~AT~gTa~~L~~~~--Gi~v~~v---i~~~~-gg~~~i~~~I~~g~i~ 77 (142)
T PRK05234 4 RKRIALIAHDHKKDDLVAWVKAHKDLLEQHELYATGTTGGLIQEAT--GLDVTRL---LSGPL-GGDQQIGALIAEGKID 77 (142)
T ss_pred CcEEEEEEeccchHHHHHHHHHHHHHhcCCEEEEeChHHHHHHhcc--CCeeEEE---EcCCC-CCchhHHHHHHcCcee
Confidence 3455543 55555666677777777 999876555555544321 1223333 22222 22345666665 455
Q ss_pred EEEEec
Q 008626 91 TIITSN 96 (559)
Q Consensus 91 VImLSa 96 (559)
.|+.+.
T Consensus 78 lVInt~ 83 (142)
T PRK05234 78 MLIFFR 83 (142)
T ss_pred EEEEec
Confidence 555544
No 218
>PRK05637 anthranilate synthase component II; Provisional
Probab=51.41 E-value=24 Score=35.11 Aligned_cols=49 Identities=18% Similarity=0.215 Sum_probs=35.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEE
Q 008626 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIV 69 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIv 69 (559)
.+|||||........|...|+..|+.+..+..... ++.+.. ..||.||+
T Consensus 2 ~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~~~-~~~l~~--~~~~~iIl 50 (208)
T PRK05637 2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTVP-VEEILA--ANPDLICL 50 (208)
T ss_pred CEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCCCC-HHHHHh--cCCCEEEE
Confidence 58999999888888999999999987776554322 233333 45777777
No 219
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=51.36 E-value=19 Score=35.01 Aligned_cols=48 Identities=17% Similarity=0.094 Sum_probs=35.2
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEE
Q 008626 20 VLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIV 69 (559)
Q Consensus 20 VLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIv 69 (559)
|||||.....-..+.++|+.+|+.|+...+....++.+.+ ..||.||+
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~~--~~~d~iil 49 (188)
T TIGR00566 2 VLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIEA--LLPLLIVI 49 (188)
T ss_pred EEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHHh--cCCCEEEE
Confidence 8999999999999999999999988866543222334444 45786665
No 220
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=51.33 E-value=1e+02 Score=30.25 Aligned_cols=74 Identities=16% Similarity=0.223 Sum_probs=49.4
Q ss_pred HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Q 008626 51 NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQ 129 (559)
Q Consensus 51 ~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq 129 (559)
++..+.+.. .|++|+-... + .-|..+++.+. .+|||+. .... ..+.+..+..+++.++-+.++|.+.+.
T Consensus 270 ~~~~~~~~~----ad~~i~~~~~-~-~~~~~~~Ea~~~G~pvI~~-~~~~---~~~~~~~~~~g~~~~~~~~~~l~~~i~ 339 (377)
T cd03798 270 EEVPAYYAA----ADVFVLPSLR-E-GFGLVLLEAMACGLPVVAT-DVGG---IPEIITDGENGLLVPPGDPEALAEAIL 339 (377)
T ss_pred HHHHHHHHh----cCeeecchhh-c-cCChHHHHHHhcCCCEEEe-cCCC---hHHHhcCCcceeEECCCCHHHHHHHHH
Confidence 444444444 4666543322 4 45677888775 8998754 3333 334567788899999999999999988
Q ss_pred HHHHH
Q 008626 130 HVVHK 134 (559)
Q Consensus 130 ~vlrr 134 (559)
.++..
T Consensus 340 ~~~~~ 344 (377)
T cd03798 340 RLLAD 344 (377)
T ss_pred HHhcC
Confidence 87754
No 221
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=51.24 E-value=2.3e+02 Score=30.45 Aligned_cols=96 Identities=14% Similarity=0.140 Sum_probs=61.0
Q ss_pred EEEEEeC---CHHHHHHHHHHHh-hCC-CEEE--EECCHHHHHHHhhcCCCCeeEEEEecCCC----------CCCC--H
Q 008626 19 RVLLLDQ---DSSAAAELKFKLE-AMD-YIVS--TFYNENEALSAFSDKPENFHVAIVEVTTS----------NTDG--S 79 (559)
Q Consensus 19 rVLIVDD---D~~~~~~L~~~L~-~~g-y~V~--ta~~~~eAL~~Lre~~~~pDLVIvDv~MP----------d~md--G 79 (559)
.+++||- +......+...|+ ... ..|+ .+.+.++|..++.. .+|++++-..=. .... +
T Consensus 113 d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~a---Gad~i~vg~~~G~~~~t~~~~g~~~~~w~ 189 (326)
T PRK05458 113 EYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENA---GADATKVGIGPGKVCITKIKTGFGTGGWQ 189 (326)
T ss_pred CEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHc---CcCEEEECCCCCcccccccccCCCCCccH
Confidence 7788863 2233333333333 332 3344 47899999877765 588877543211 0011 3
Q ss_pred HHHHHHcC---CCcEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008626 80 FKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (559)
Q Consensus 80 ~eLLe~Ir---diPVImLSa~~d~e~v~kAi~~GA~DYLvK 117 (559)
+..+..+. ++|||.-..-.....+.+|+..||+.+.+=
T Consensus 190 l~ai~~~~~~~~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG 230 (326)
T PRK05458 190 LAALRWCAKAARKPIIADGGIRTHGDIAKSIRFGATMVMIG 230 (326)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhCCCEEEec
Confidence 44455543 799998888889999999999999998874
No 222
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=51.06 E-value=20 Score=34.77 Aligned_cols=31 Identities=10% Similarity=0.151 Sum_probs=26.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC
Q 008626 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFY 48 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~ 48 (559)
+||||||.....-..|.++|++.|+++..+.
T Consensus 2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~ 32 (190)
T PRK06895 2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVN 32 (190)
T ss_pred cEEEEEeCCCchHHHHHHHHHHcCCcEEEEE
Confidence 6999999888888789999999998777655
No 223
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=50.80 E-value=1.1e+02 Score=29.34 Aligned_cols=67 Identities=18% Similarity=0.140 Sum_probs=46.5
Q ss_pred EECCHHHHHHHhhcCCCCeeEEEEecCCCCC-------CCHHHHHHHcC----CCcEEEEecCCCHHHHHHHHHcCCCEE
Q 008626 46 TFYNENEALSAFSDKPENFHVAIVEVTTSNT-------DGSFKFLETAK----DLPTIITSNIHCLSTMMKCIALGAVEF 114 (559)
Q Consensus 46 ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~-------mdG~eLLe~Ir----diPVImLSa~~d~e~v~kAi~~GA~DY 114 (559)
.|.+.+++.+.+ + ...|+|.++--.+.. ..|+++++.+. ++||+++.+- +.+.+.+++..|++++
T Consensus 102 s~h~~~e~~~a~-~--~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~~~pv~a~GGI-~~~~~~~~~~~G~~gv 177 (196)
T TIGR00693 102 STHNLEELAEAE-A--EGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSIDIPIVAIGGI-TLENAAEVLAAGADGV 177 (196)
T ss_pred eCCCHHHHHHHh-H--cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcCCCEE
Confidence 677888876644 3 468998876544420 23677776653 5898877655 5788889999999988
Q ss_pred Ee
Q 008626 115 LR 116 (559)
Q Consensus 115 Lv 116 (559)
.+
T Consensus 178 a~ 179 (196)
T TIGR00693 178 AV 179 (196)
T ss_pred EE
Confidence 65
No 224
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=49.94 E-value=2.3e+02 Score=34.09 Aligned_cols=115 Identities=10% Similarity=0.077 Sum_probs=77.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhh----CCCEEE-EECCHHHHHHH----------------hhcCCCCeeEEEEecCCC
Q 008626 16 KGLRVLLLDQDSSAAAELKFKLEA----MDYIVS-TFYNENEALSA----------------FSDKPENFHVAIVEVTTS 74 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~----~gy~V~-ta~~~~eAL~~----------------Lre~~~~pDLVIvDv~MP 74 (559)
....|+|...++.....+..+++. .|++|. .|+++.|.++. |+. .-+|++++|++--
T Consensus 236 ~~vnI~vhGHnp~l~~~iv~~~~~~el~~gI~~~GiCCTg~e~~R~~~g~~~~Gn~~~qe~~i~T--GavD~~VvD~QCi 313 (781)
T PRK00941 236 SKPVILVIGHNVAPGTYIIDYLEENGLTDKVEVCGICCTAIDITRYSEKAKVVGPLSKQLKFIRS--GIPDVIVVDEQCV 313 (781)
T ss_pred CCcEEEEECCCchHHHHHHHHHhCcchhhCceEEEEecccchHhhhccCCcccCcHHHHHHHHHc--CCCcEEEEecccC
Confidence 346899999999999999988763 278777 88888887644 334 6799999999754
Q ss_pred CCCCHHHHHHHcCCCcEEEEec----------CCCHHHHHHHHHcCC--CEEEeCCCCHHHHHHHHHHHHHH
Q 008626 75 NTDGSFKFLETAKDLPTIITSN----------IHCLSTMMKCIALGA--VEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 75 d~mdG~eLLe~IrdiPVImLSa----------~~d~e~v~kAi~~GA--~DYLvKPis~eeL~~iIq~vlrr 134 (559)
- -+-.++.+. -+.++|-+|. +.+.+.+.+.+..|- --+++-|....|+.-.+...+..
T Consensus 314 ~-p~L~eiA~~-ygt~lItTs~k~~~eLPdit~~die~Ii~~L~~~~~~g~~i~~~~k~g~~a~~~a~~~~~ 383 (781)
T PRK00941 314 R-TDILEEAKK-LGIPVIATNDKICLGLPDRTDEDVDEIIEDLVSGKIPGALILDPEKVGEVAVRVAKAVAP 383 (781)
T ss_pred c-ccHHHHHHH-hCCCEEEecccccccCCCCCccCHHHHHHHHHhCCCCeeEEecHHHHHHHHHHHHHHHhh
Confidence 3 334444432 2666666654 456677766666654 44566666666666655555443
No 225
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=49.84 E-value=1.8e+02 Score=31.45 Aligned_cols=106 Identities=10% Similarity=0.198 Sum_probs=68.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCE-EEEE---CCHHHHHHHhhcCCCCeeEEEEecCCC--CCCCHHHHHHHcC-CC
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAMDYI-VSTF---YNENEALSAFSDKPENFHVAIVEVTTS--NTDGSFKFLETAK-DL 89 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~-V~ta---~~~~eAL~~Lre~~~~pDLVIvDv~MP--d~mdG~eLLe~Ir-di 89 (559)
.++++|+.|-+ .+..|++.++..+.. ++.+ -..++....+.. .|+.++ .... +..-+..+++.+. .+
T Consensus 269 ~i~l~ivG~G~-~~~~l~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~----aDv~v~-~~~~~~~~~~p~~~~Eama~G~ 342 (415)
T cd03816 269 KLLCIITGKGP-LKEKYLERIKELKLKKVTIRTPWLSAEDYPKLLAS----ADLGVS-LHTSSSGLDLPMKVVDMFGCGL 342 (415)
T ss_pred CEEEEEEecCc-cHHHHHHHHHHcCCCcEEEEcCcCCHHHHHHHHHh----CCEEEE-ccccccccCCcHHHHHHHHcCC
Confidence 37888888765 366777787777653 4433 245666666665 577664 1111 1012566777765 89
Q ss_pred cEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008626 90 PTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 90 PVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
|||.. .... ..+.++.|-++++.. +.++|.+.+..++..
T Consensus 343 PVI~s-~~~~---~~eiv~~~~~G~lv~--d~~~la~~i~~ll~~ 381 (415)
T cd03816 343 PVCAL-DFKC---IDELVKHGENGLVFG--DSEELAEQLIDLLSN 381 (415)
T ss_pred CEEEe-CCCC---HHHHhcCCCCEEEEC--CHHHHHHHHHHHHhc
Confidence 99874 4333 335577899999984 899999988887653
No 226
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=49.55 E-value=73 Score=33.70 Aligned_cols=91 Identities=11% Similarity=0.022 Sum_probs=59.8
Q ss_pred EEEEeCCHHHHHHHHHHHhh----CC--CEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHc---CCCc
Q 008626 20 VLLLDQDSSAAAELKFKLEA----MD--YIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA---KDLP 90 (559)
Q Consensus 20 VLIVDDD~~~~~~L~~~L~~----~g--y~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~I---rdiP 90 (559)
|||-|.+-.....+...+++ .+ ...+.+.+.++|.+.+.. ..|+|++|-.-|+ +--+.++.+ ..-.
T Consensus 173 ilIkdNHi~~~G~i~~ai~~~r~~~~~~kIeVEv~tl~ea~eal~~---gaDiI~LDnm~~e--~vk~av~~~~~~~~~v 247 (289)
T PRK07896 173 ALIKDNHVAAAGSVVAALRAVRAAAPDLPCEVEVDSLEQLDEVLAE---GAELVLLDNFPVW--QTQEAVQRRDARAPTV 247 (289)
T ss_pred eeecHHHHHHhCcHHHHHHHHHHhCCCCCEEEEcCCHHHHHHHHHc---CCCEEEeCCCCHH--HHHHHHHHHhccCCCE
Confidence 66666665444344444432 22 245588999999999866 5899999943333 333344443 2334
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEE
Q 008626 91 TIITSNIHCLSTMMKCIALGAVEFL 115 (559)
Q Consensus 91 VImLSa~~d~e~v~kAi~~GA~DYL 115 (559)
.|..|+.-+.+.+.+..+.|++-+-
T Consensus 248 ~ieaSGGI~~~ni~~yA~tGvD~Is 272 (289)
T PRK07896 248 LLESSGGLTLDTAAAYAETGVDYLA 272 (289)
T ss_pred EEEEECCCCHHHHHHHHhcCCCEEE
Confidence 6778888899999999999987554
No 227
>PRK10742 putative methyltransferase; Provisional
Probab=49.34 E-value=77 Score=32.90 Aligned_cols=56 Identities=20% Similarity=0.162 Sum_probs=42.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhC------CC----EEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCC
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAM------DY----IVS-TFYNENEALSAFSDKPENFHVAIVEVTTSN 75 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~------gy----~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd 75 (559)
|-+|..||-++.+...|+.-|++. +- ++. ...+..+.|..+. ..||+|.+|-.-|.
T Consensus 110 G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~---~~fDVVYlDPMfp~ 176 (250)
T PRK10742 110 GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDIT---PRPQVVYLDPMFPH 176 (250)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCC---CCCcEEEECCCCCC
Confidence 567999999999999999999874 21 233 4566666666533 46999999998887
No 228
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=49.26 E-value=18 Score=35.06 Aligned_cols=73 Identities=15% Similarity=0.133 Sum_probs=45.5
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCC-CC--HHHHHHHcC-CCcEEEE
Q 008626 20 VLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNT-DG--SFKFLETAK-DLPTIIT 94 (559)
Q Consensus 20 VLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~-md--G~eLLe~Ir-diPVImL 94 (559)
|||||.....--.|..+|+..|+++..+.+.+..++.+.. ..||.||+-=.=.+. .+ -.++++.+. .+||+-+
T Consensus 2 il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~--~~~d~iils~GPg~p~~~~~~~~~~~~~~~~~PiLGI 78 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDA--LKPQKIVISPGPCTPDEAGISLDVIRHYAGRLPILGV 78 (187)
T ss_pred EEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHHh--cCCCEEEEcCCCCChHHCCccHHHHHHhcCCCCEEEE
Confidence 8999999999999999999999888866654322344444 457777763211000 11 234454442 6787654
No 229
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=49.10 E-value=66 Score=34.18 Aligned_cols=92 Identities=12% Similarity=0.073 Sum_probs=63.9
Q ss_pred EEEEEeCCHHHHHHHHHHHhh----CC--CEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEE
Q 008626 19 RVLLLDQDSSAAAELKFKLEA----MD--YIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTI 92 (559)
Q Consensus 19 rVLIVDDD~~~~~~L~~~L~~----~g--y~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVI 92 (559)
.|||-|.+......+...+++ .. ...+.+.+.++|.+.+.. .+|+|++|-.-|+ +--++++.++.-.+|
T Consensus 181 ~iLikdNHi~~~G~i~~av~~~r~~~~~~kIeVEv~sleea~ea~~~---gaDiI~LDn~s~e--~~~~av~~~~~~~~i 255 (296)
T PRK09016 181 AFLIKENHIIASGSIRQAVEKAFWLHPDVPVEVEVENLDELDQALKA---GADIIMLDNFTTE--QMREAVKRTNGRALL 255 (296)
T ss_pred hhccCHHHHHHhCcHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHc---CCCEEEeCCCChH--HHHHHHHhhcCCeEE
Confidence 366666665555445555532 22 345588999999999977 4799999986554 344555555554467
Q ss_pred EEecCCCHHHHHHHHHcCCCEEE
Q 008626 93 ITSNIHCLSTMMKCIALGAVEFL 115 (559)
Q Consensus 93 mLSa~~d~e~v~kAi~~GA~DYL 115 (559)
..|+.-+.+.+.+..+.|++-+-
T Consensus 256 eaSGGI~~~ni~~yA~tGVD~Is 278 (296)
T PRK09016 256 EVSGNVTLETLREFAETGVDFIS 278 (296)
T ss_pred EEECCCCHHHHHHHHhcCCCEEE
Confidence 78888899999999999987553
No 230
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=49.04 E-value=1.3e+02 Score=33.40 Aligned_cols=57 Identities=9% Similarity=0.053 Sum_probs=37.2
Q ss_pred CCcEEEEEeCCHHH---HHHHHHHHhhCCCEEEEECCHHHHHHHhhcCC--CCeeEEEEecC
Q 008626 16 KGLRVLLLDQDSSA---AAELKFKLEAMDYIVSTFYNENEALSAFSDKP--ENFHVAIVEVT 72 (559)
Q Consensus 16 ~glrVLIVDDD~~~---~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~--~~pDLVIvDv~ 72 (559)
.+.+|.+|+-|+.- .+.+..+-...++.+..+.+..+..+.+.... ..+|+||+|.-
T Consensus 233 ~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~~D~VLIDTA 294 (407)
T PRK12726 233 QNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNCVDHILIDTV 294 (407)
T ss_pred cCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCCCCEEEEECC
Confidence 35789999988643 33455555556766666677766655554311 35899999984
No 231
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=48.89 E-value=1.7e+02 Score=29.90 Aligned_cols=75 Identities=15% Similarity=0.090 Sum_probs=45.4
Q ss_pred cEEEEEeCCH----HHHHHHHHHHhhCCCEEEE---E----CCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHc
Q 008626 18 LRVLLLDQDS----SAAAELKFKLEAMDYIVST---F----YNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA 86 (559)
Q Consensus 18 lrVLIVDDD~----~~~~~L~~~L~~~gy~V~t---a----~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~I 86 (559)
-+|.+|.++. .....+...+++.|++|+. + .+....+..|+. ..+|+|++...- .+...+++.+
T Consensus 142 ~~v~~v~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~--~~~d~i~~~~~~---~~~~~~~~~~ 216 (345)
T cd06338 142 KKVAILYADDPFSQDVAEGAREKAEAAGLEVVYDETYPPGTADLSPLISKAKA--AGPDAVVVAGHF---PDAVLLVRQM 216 (345)
T ss_pred ceEEEEecCCcccHHHHHHHHHHHHHcCCEEEEEeccCCCccchHHHHHHHHh--cCCCEEEECCcc---hhHHHHHHHH
Confidence 4555554443 2345566777778888762 2 244556666666 679999986543 3466677766
Q ss_pred C----CCcEEEEecC
Q 008626 87 K----DLPTIITSNI 97 (559)
Q Consensus 87 r----diPVImLSa~ 97 (559)
+ ..++++.+..
T Consensus 217 ~~~g~~~~~~~~~~~ 231 (345)
T cd06338 217 KELGYNPKALYMTVG 231 (345)
T ss_pred HHcCCCCCEEEEecC
Confidence 4 4666655543
No 232
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=48.84 E-value=1.6e+02 Score=29.50 Aligned_cols=96 Identities=22% Similarity=0.286 Sum_probs=60.4
Q ss_pred CcEEEEEeCC----HHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCC-------CCHHHHHH
Q 008626 17 GLRVLLLDQD----SSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNT-------DGSFKFLE 84 (559)
Q Consensus 17 glrVLIVDDD----~~~~~~L~~~L~~~gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~-------mdG~eLLe 84 (559)
|-.|+.+|-. +..+..|-..++..+.-+. -|++.+|++...+- .+|+|=+= |.++ ..-|+|++
T Consensus 64 GadIIAlDaT~R~Rp~~l~~li~~i~~~~~l~MADist~ee~~~A~~~---G~D~I~TT--LsGYT~~t~~~~pD~~lv~ 138 (192)
T PF04131_consen 64 GADIIALDATDRPRPETLEELIREIKEKYQLVMADISTLEEAINAAEL---GFDIIGTT--LSGYTPYTKGDGPDFELVR 138 (192)
T ss_dssp T-SEEEEE-SSSS-SS-HHHHHHHHHHCTSEEEEE-SSHHHHHHHHHT---T-SEEE-T--TTTSSTTSTTSSHHHHHHH
T ss_pred CCCEEEEecCCCCCCcCHHHHHHHHHHhCcEEeeecCCHHHHHHHHHc---CCCEEEcc--cccCCCCCCCCCCCHHHHH
Confidence 4456666632 2234444555555443333 78899999988776 58987654 3331 23588888
Q ss_pred HcC--CCcEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008626 85 TAK--DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (559)
Q Consensus 85 ~Ir--diPVImLSa~~d~e~v~kAi~~GA~DYLvK 117 (559)
.+. .+|||+=-...+.+.+.+++++||+..++-
T Consensus 139 ~l~~~~~pvIaEGri~tpe~a~~al~~GA~aVVVG 173 (192)
T PF04131_consen 139 ELVQADVPVIAEGRIHTPEQAAKALELGAHAVVVG 173 (192)
T ss_dssp HHHHTTSEEEEESS--SHHHHHHHHHTT-SEEEE-
T ss_pred HHHhCCCcEeecCCCCCHHHHHHHHhcCCeEEEEC
Confidence 875 799888888899999999999999999874
No 233
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=48.68 E-value=1.7e+02 Score=28.92 Aligned_cols=75 Identities=11% Similarity=0.142 Sum_probs=48.1
Q ss_pred CHHHHHHHhhcCCCCeeEEEEecCCCCCC----CHHHHHHHcC-CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHH
Q 008626 49 NENEALSAFSDKPENFHVAIVEVTTSNTD----GSFKFLETAK-DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDK 123 (559)
Q Consensus 49 ~~~eAL~~Lre~~~~pDLVIvDv~MPd~m----dG~eLLe~Ir-diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~ee 123 (559)
+.++..+.+.. .|++|+=..... . .+..+++.+. .+|||+.......+ .+..|-.+++..+-+.++
T Consensus 284 ~~~~~~~~~~~----~di~i~~~~~~~-~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~----~~~~~~~g~~~~~~~~~~ 354 (394)
T cd03794 284 PKEELPELLAA----ADVGLVPLKPGP-AFEGVSPSKLFEYMAAGKPVLASVDGESAE----LVEEAGAGLVVPPGDPEA 354 (394)
T ss_pred ChHHHHHHHHh----hCeeEEeccCcc-cccccCchHHHHHHHCCCcEEEecCCCchh----hhccCCcceEeCCCCHHH
Confidence 34555555555 466665444332 2 2345677775 89988654443333 344557788999999999
Q ss_pred HHHHHHHHH
Q 008626 124 LRNLWQHVV 132 (559)
Q Consensus 124 L~~iIq~vl 132 (559)
|.+.+..++
T Consensus 355 l~~~i~~~~ 363 (394)
T cd03794 355 LAAAILELL 363 (394)
T ss_pred HHHHHHHHH
Confidence 999988887
No 234
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=48.38 E-value=1e+02 Score=28.06 Aligned_cols=73 Identities=15% Similarity=0.168 Sum_probs=48.8
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHH---hhCCCE--EEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-
Q 008626 14 FPKGLRVLLLDQDSSAAAELKFKL---EAMDYI--VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK- 87 (559)
Q Consensus 14 ~p~glrVLIVDDD~~~~~~L~~~L---~~~gy~--V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir- 87 (559)
+|...-++||.||+.+++.|+.-- ++.+-. |+.+.+ .++++.|++ --+ ++.|-- .+|-++.+++.
T Consensus 21 ~pg~~p~FlIGdD~~S~~WL~~~~~~L~~l~AvGlVVnV~t-~~~l~~Lr~--lap-----gl~l~P-~sgddLa~rL~l 91 (105)
T TIGR03765 21 LPGLTPLFLIGDDPASRQWLQQNAAALKSLGAVGLVVNVET-AAALQRLRA--LAP-----GLPLLP-VSGDDLAERLGL 91 (105)
T ss_pred CCCCCceEEEeCCHHHHHHHHHHHHHHHHCCCeEEEEecCC-HHHHHHHHH--HcC-----CCcccC-CCHHHHHHHhCC
Confidence 444446899999999999997654 444321 333433 667788887 223 344445 68999999885
Q ss_pred -CCcEEEEe
Q 008626 88 -DLPTIITS 95 (559)
Q Consensus 88 -diPVImLS 95 (559)
+-||++..
T Consensus 92 ~hYPvLit~ 100 (105)
T TIGR03765 92 RHYPVLITA 100 (105)
T ss_pred CcccEEEec
Confidence 78988654
No 235
>PLN02591 tryptophan synthase
Probab=48.37 E-value=56 Score=33.70 Aligned_cols=53 Identities=11% Similarity=0.130 Sum_probs=41.6
Q ss_pred HHHHHHHcC---CCcEEEEecCC------CHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Q 008626 79 SFKFLETAK---DLPTIITSNIH------CLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHV 131 (559)
Q Consensus 79 G~eLLe~Ir---diPVImLSa~~------d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~v 131 (559)
.|++++.+| ++|+|+|+-.. -.....+|.++|+++.|+-.+..+|.......+
T Consensus 66 ~~~~~~~~r~~~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~ 127 (250)
T PLN02591 66 VISMLKEVAPQLSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEA 127 (250)
T ss_pred HHHHHHHHhcCCCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 577777776 58999898754 344588899999999999999998888765554
No 236
>PRK04302 triosephosphate isomerase; Provisional
Probab=48.09 E-value=2e+02 Score=28.59 Aligned_cols=79 Identities=14% Similarity=0.099 Sum_probs=48.3
Q ss_pred HHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecC--CCC------C-CCH-HHHHHHcC----CCcEEEEecCCCH
Q 008626 36 KLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVT--TSN------T-DGS-FKFLETAK----DLPTIITSNIHCL 100 (559)
Q Consensus 36 ~L~~~gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~--MPd------~-mdG-~eLLe~Ir----diPVImLSa~~d~ 100 (559)
.....|..++ ++.+.+++.. +.+ ..+|+|-..-. +.. . ..+ .++++.++ ++|||.-.+-.+.
T Consensus 109 ~a~~~Gl~~I~~v~~~~~~~~-~~~--~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~ 185 (223)
T PRK04302 109 RAKKLGLESVVCVNNPETSAA-AAA--LGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGISTG 185 (223)
T ss_pred HHHHCCCeEEEEcCCHHHHHH-Hhc--CCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECCCCCH
Confidence 3344688766 5555555544 444 45676643211 110 0 112 23444444 5899988888899
Q ss_pred HHHHHHHHcCCCEEEeC
Q 008626 101 STMMKCIALGAVEFLRK 117 (559)
Q Consensus 101 e~v~kAi~~GA~DYLvK 117 (559)
+.+..+++.||+++++-
T Consensus 186 e~~~~~~~~gadGvlVG 202 (223)
T PRK04302 186 EDVKAALELGADGVLLA 202 (223)
T ss_pred HHHHHHHcCCCCEEEEe
Confidence 99999999999999875
No 237
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=47.94 E-value=1.5e+02 Score=32.83 Aligned_cols=89 Identities=15% Similarity=0.180 Sum_probs=51.0
Q ss_pred CcEEEEEeCCHHH---HHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecC--CCCCCCHHHHHHH-cC---
Q 008626 17 GLRVLLLDQDSSA---AAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVT--TSNTDGSFKFLET-AK--- 87 (559)
Q Consensus 17 glrVLIVDDD~~~---~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~--MPd~mdG~eLLe~-Ir--- 87 (559)
+.+|.+|+-|+.- .+.|..+-+..++.+..+.+..+....|... ..+|+||+|.- .+......+.+.. +.
T Consensus 251 g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~-~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~ 329 (424)
T PRK05703 251 KKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL-RDCDVILIDTAGRSQRDKRLIEELKALIEFSG 329 (424)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh-CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccC
Confidence 5789999988742 2334444455677777677777766666653 35899999973 1110112222222 22
Q ss_pred -C-CcEEEEecCCCHHHHHHH
Q 008626 88 -D-LPTIITSNIHCLSTMMKC 106 (559)
Q Consensus 88 -d-iPVImLSa~~d~e~v~kA 106 (559)
. -.++++++......+.++
T Consensus 330 ~~~~~~LVl~a~~~~~~l~~~ 350 (424)
T PRK05703 330 EPIDVYLVLSATTKYEDLKDI 350 (424)
T ss_pred CCCeEEEEEECCCCHHHHHHH
Confidence 1 236777776665554443
No 238
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=47.79 E-value=99 Score=32.77 Aligned_cols=91 Identities=10% Similarity=0.054 Sum_probs=66.2
Q ss_pred EEEEEeCCHHHHHHHHHHHhh----CCC--E-EEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcE
Q 008626 19 RVLLLDQDSSAAAELKFKLEA----MDY--I-VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPT 91 (559)
Q Consensus 19 rVLIVDDD~~~~~~L~~~L~~----~gy--~-V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPV 91 (559)
.|||-|.+-.....+...+++ .++ . .+.+.+.++|.+.+.. ..|+|++|=.-|+ +--+.++.++.-.+
T Consensus 169 ~iLIkdNHi~~~g~i~~av~~~r~~~~~~~kIeVEv~tleea~~a~~a---gaDiImLDnmspe--~l~~av~~~~~~~~ 243 (290)
T PRK06559 169 AIMLKDNHIAAVGSVQKAIAQARAYAPFVKMVEVEVESLAAAEEAAAA---GADIIMLDNMSLE--QIEQAITLIAGRSR 243 (290)
T ss_pred eEEEcHHHHHhhccHHHHHHHHHHhCCCCCeEEEECCCHHHHHHHHHc---CCCEEEECCCCHH--HHHHHHHHhcCceE
Confidence 488888887766556555543 342 2 3478999999999876 5899999986555 34455555565557
Q ss_pred EEEecCCCHHHHHHHHHcCCCEE
Q 008626 92 IITSNIHCLSTMMKCIALGAVEF 114 (559)
Q Consensus 92 ImLSa~~d~e~v~kAi~~GA~DY 114 (559)
|-.|+.-..+.+.+....|++-.
T Consensus 244 leaSGGI~~~ni~~yA~tGVD~I 266 (290)
T PRK06559 244 IECSGNIDMTTISRFRGLAIDYV 266 (290)
T ss_pred EEEECCCCHHHHHHHHhcCCCEE
Confidence 77888889999999999998744
No 239
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=47.55 E-value=90 Score=26.97 Aligned_cols=74 Identities=14% Similarity=0.071 Sum_probs=44.2
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC--CCcEEEEecC
Q 008626 20 VLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (559)
Q Consensus 20 VLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir--diPVImLSa~ 97 (559)
|+|+.-....+..++.+.+ .++.|+.+..-.+..+.+++ ..+.++.-|.. -.+.++.+. +.-.|+++..
T Consensus 1 vvI~G~g~~~~~i~~~L~~-~~~~vvvid~d~~~~~~~~~--~~~~~i~gd~~------~~~~l~~a~i~~a~~vv~~~~ 71 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKE-GGIDVVVIDRDPERVEELRE--EGVEVIYGDAT------DPEVLERAGIEKADAVVILTD 71 (116)
T ss_dssp EEEES-SHHHHHHHHHHHH-TTSEEEEEESSHHHHHHHHH--TTSEEEES-TT------SHHHHHHTTGGCESEEEEESS
T ss_pred eEEEcCCHHHHHHHHHHHh-CCCEEEEEECCcHHHHHHHh--cccccccccch------hhhHHhhcCccccCEEEEccC
Confidence 6788888766665555555 66788877766777777777 45676665553 344666654 4444445444
Q ss_pred CCHHH
Q 008626 98 HCLST 102 (559)
Q Consensus 98 ~d~e~ 102 (559)
++...
T Consensus 72 ~d~~n 76 (116)
T PF02254_consen 72 DDEEN 76 (116)
T ss_dssp SHHHH
T ss_pred CHHHH
Confidence 44333
No 240
>PRK07695 transcriptional regulator TenI; Provisional
Probab=47.54 E-value=2.7e+02 Score=26.97 Aligned_cols=66 Identities=14% Similarity=0.139 Sum_probs=45.7
Q ss_pred EECCHHHHHHHhhcCCCCeeEEEEecCCCCC------CCHHHHHHHcC---CCcEEEEecCCCHHHHHHHHHcCCCEEE
Q 008626 46 TFYNENEALSAFSDKPENFHVAIVEVTTSNT------DGSFKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFL 115 (559)
Q Consensus 46 ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~------mdG~eLLe~Ir---diPVImLSa~~d~e~v~kAi~~GA~DYL 115 (559)
++.+.+++.+.. + ...|.|++.-..+.. ..|++.++.+. .+||+++-+- +.+.+.+++..||+.+.
T Consensus 101 s~~s~e~a~~a~-~--~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~~ipvia~GGI-~~~~~~~~~~~Ga~gva 175 (201)
T PRK07695 101 SVHSLEEAIQAE-K--NGADYVVYGHVFPTDCKKGVPARGLEELSDIARALSIPVIAIGGI-TPENTRDVLAAGVSGIA 175 (201)
T ss_pred eCCCHHHHHHHH-H--cCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEEcCC-CHHHHHHHHHcCCCEEE
Confidence 667777766543 3 367888776432220 23567777664 7999987766 77889999999998874
No 241
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=47.49 E-value=91 Score=31.56 Aligned_cols=64 Identities=11% Similarity=0.150 Sum_probs=48.8
Q ss_pred HHHHHHhhcCCCC-eeEEEEecCCCCCCCH--HHHHHHcC---CCcEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008626 51 NEALSAFSDKPEN-FHVAIVEVTTSNTDGS--FKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (559)
Q Consensus 51 ~eAL~~Lre~~~~-pDLVIvDv~MPd~mdG--~eLLe~Ir---diPVImLSa~~d~e~v~kAi~~GA~DYLv 116 (559)
.+.++.+.+ .. -.++++|+..-+.+.| +++++.+. ++|||+-..-.+.+.+.++++.|++..++
T Consensus 151 ~~~~~~~~~--~g~~~ii~tdi~~dGt~~G~~~~li~~l~~~~~ipvi~~GGi~s~edi~~l~~~G~~~viv 220 (234)
T PRK13587 151 FSFVRQLSD--IPLGGIIYTDIAKDGKMSGPNFELTGQLVKATTIPVIASGGIRHQQDIQRLASLNVHAAII 220 (234)
T ss_pred HHHHHHHHH--cCCCEEEEecccCcCCCCccCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 556666655 33 3799999986653344 56667664 78999888889999999999999999987
No 242
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=47.30 E-value=2.1e+02 Score=29.38 Aligned_cols=75 Identities=12% Similarity=0.174 Sum_probs=51.8
Q ss_pred CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHH
Q 008626 49 NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNL 127 (559)
Q Consensus 49 ~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~i 127 (559)
+..+....+.. .|++++=. ..+ .-|..+++.+. .+|||+ +.... ..+.+..+.++++..+.+.++|.+.
T Consensus 292 ~~~~~~~~~~~----adi~l~ps-~~e-~~~~~l~Ea~a~G~Pvi~-s~~~~---~~e~i~~~~~g~~~~~~~~~~l~~~ 361 (398)
T cd03800 292 SREDLPALYRA----ADVFVNPA-LYE-PFGLTALEAMACGLPVVA-TAVGG---PRDIVVDGVTGLLVDPRDPEALAAA 361 (398)
T ss_pred CHHHHHHHHHh----CCEEEecc-ccc-ccCcHHHHHHhcCCCEEE-CCCCC---HHHHccCCCCeEEeCCCCHHHHHHH
Confidence 34555556655 57776532 334 45677888875 899875 43333 3345777888999999999999999
Q ss_pred HHHHHH
Q 008626 128 WQHVVH 133 (559)
Q Consensus 128 Iq~vlr 133 (559)
|..++.
T Consensus 362 i~~l~~ 367 (398)
T cd03800 362 LRRLLT 367 (398)
T ss_pred HHHHHh
Confidence 988774
No 243
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=47.19 E-value=1.1e+02 Score=31.90 Aligned_cols=80 Identities=19% Similarity=0.293 Sum_probs=52.9
Q ss_pred HHHHhhCCCEEEEECCHHHHH-HHhhcCCCCeeEEEEecCCCCCCCHH-----HHHHHcC---CCcEEEEecCCCHHHHH
Q 008626 34 KFKLEAMDYIVSTFYNENEAL-SAFSDKPENFHVAIVEVTTSNTDGSF-----KFLETAK---DLPTIITSNIHCLSTMM 104 (559)
Q Consensus 34 ~~~L~~~gy~V~ta~~~~eAL-~~Lre~~~~pDLVIvDv~MPd~mdG~-----eLLe~Ir---diPVImLSa~~d~e~v~ 104 (559)
.++|-+.||.|.-+.+.+-.+ +.|++ -. -.+++-+.-|= ++|. ..|+.|. ++|||+=.+-+....+.
T Consensus 123 ae~Lv~eGF~VlPY~~dD~v~arrLee--~G-caavMPl~aPI-GSg~G~~n~~~l~iiie~a~VPviVDAGiG~pSdAa 198 (262)
T COG2022 123 AEQLVKEGFVVLPYTTDDPVLARRLEE--AG-CAAVMPLGAPI-GSGLGLQNPYNLEIIIEEADVPVIVDAGIGTPSDAA 198 (262)
T ss_pred HHHHHhCCCEEeeccCCCHHHHHHHHh--cC-ceEeccccccc-cCCcCcCCHHHHHHHHHhCCCCEEEeCCCCChhHHH
Confidence 455667799999655444433 33444 12 33444454443 3332 3344443 89999999999999999
Q ss_pred HHHHcCCCEEEeC
Q 008626 105 KCIALGAVEFLRK 117 (559)
Q Consensus 105 kAi~~GA~DYLvK 117 (559)
.+++.|++..|+-
T Consensus 199 ~aMElG~DaVL~N 211 (262)
T COG2022 199 QAMELGADAVLLN 211 (262)
T ss_pred HHHhcccceeehh
Confidence 9999999999874
No 244
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=46.88 E-value=50 Score=32.01 Aligned_cols=93 Identities=14% Similarity=0.068 Sum_probs=60.8
Q ss_pred EEEEEeCCHHHHHHHHHHHhh----CC--C-EEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHc---CC
Q 008626 19 RVLLLDQDSSAAAELKFKLEA----MD--Y-IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA---KD 88 (559)
Q Consensus 19 rVLIVDDD~~~~~~L~~~L~~----~g--y-~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~I---rd 88 (559)
.|||-|.+-.+...+...+++ .+ . ..+.+.+.+++.+.+.. .+|+|++|-.-|+ +--++++.+ ..
T Consensus 52 ~ili~~nHi~~~g~i~~av~~~~~~~~~~~~I~VEv~~~ee~~ea~~~---g~d~I~lD~~~~~--~~~~~v~~l~~~~~ 126 (169)
T PF01729_consen 52 MILIKDNHIAFFGGIEEAVKAARQAAPEKKKIEVEVENLEEAEEALEA---GADIIMLDNMSPE--DLKEAVEELRELNP 126 (169)
T ss_dssp SEEE-HHHHHHHSSHHHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHT---T-SEEEEES-CHH--HHHHHHHHHHHHTT
T ss_pred cEEehHHHHHHhCCHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHh---CCCEEEecCcCHH--HHHHHHHHHhhcCC
Confidence 366666666655445554432 22 2 33488999999998887 4899999986555 333444433 33
Q ss_pred CcEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008626 89 LPTIITSNIHCLSTMMKCIALGAVEFLR 116 (559)
Q Consensus 89 iPVImLSa~~d~e~v~kAi~~GA~DYLv 116 (559)
-..|.+|+.-+.+.+.+..+.|++.+-+
T Consensus 127 ~v~ie~SGGI~~~ni~~ya~~gvD~isv 154 (169)
T PF01729_consen 127 RVKIEASGGITLENIAEYAKTGVDVISV 154 (169)
T ss_dssp TSEEEEESSSSTTTHHHHHHTT-SEEEE
T ss_pred cEEEEEECCCCHHHHHHHHhcCCCEEEc
Confidence 4777888988999999999999876643
No 245
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=46.81 E-value=1.4e+02 Score=31.41 Aligned_cols=98 Identities=13% Similarity=0.136 Sum_probs=59.0
Q ss_pred EEEEE--eCCHHH---HHHHHHHHhhCCCEEEEECCHHHHHHH-------hhcCCCCeeEEEEecCCCCCCCH--HHHHH
Q 008626 19 RVLLL--DQDSSA---AAELKFKLEAMDYIVSTFYNENEALSA-------FSDKPENFHVAIVEVTTSNTDGS--FKFLE 84 (559)
Q Consensus 19 rVLIV--DDD~~~---~~~L~~~L~~~gy~V~ta~~~~eAL~~-------Lre~~~~pDLVIvDv~MPd~mdG--~eLLe 84 (559)
+|+|+ .+.+.. ...+...|+..|+++.........+.. ..+....+|+||+ + + +|| ++.++
T Consensus 7 ~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~---~-G-GDGt~l~~~~ 81 (291)
T PRK02155 7 TVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVV---L-G-GDGTMLGIGR 81 (291)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEE---E-C-CcHHHHHHHH
Confidence 47777 233333 355566666778887765433222110 0111135788887 2 3 566 34455
Q ss_pred HcC--CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008626 85 TAK--DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (559)
Q Consensus 85 ~Ir--diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~ 135 (559)
.+. ++||+-+. .|=.+||. .++.+++...+..+++..
T Consensus 82 ~~~~~~~pilGIn-------------~G~lGFL~-~~~~~~~~~~l~~~~~g~ 120 (291)
T PRK02155 82 QLAPYGVPLIGIN-------------HGRLGFIT-DIPLDDMQETLPPMLAGN 120 (291)
T ss_pred HhcCCCCCEEEEc-------------CCCccccc-cCCHHHHHHHHHHHHcCC
Confidence 443 78887654 46668888 789999999998887654
No 246
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=46.79 E-value=87 Score=31.56 Aligned_cols=61 Identities=16% Similarity=0.168 Sum_probs=46.3
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhCCCE--EE-EECCHHHHHHHhhcC--CCCeeEEEEecCCC
Q 008626 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDYI--VS-TFYNENEALSAFSDK--PENFHVAIVEVTTS 74 (559)
Q Consensus 14 ~p~glrVLIVDDD~~~~~~L~~~L~~~gy~--V~-ta~~~~eAL~~Lre~--~~~pDLVIvDv~MP 74 (559)
++..-+|.-+|-++...+..++.++..|+. +. ...++.+.+..+... ...||+|++|..=+
T Consensus 90 ~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~k~ 155 (234)
T PLN02781 90 LPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVDADKP 155 (234)
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCCHH
Confidence 343458999999999999999999988763 44 567888888777542 24799999997533
No 247
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=46.74 E-value=1.4e+02 Score=28.83 Aligned_cols=74 Identities=11% Similarity=0.078 Sum_probs=51.9
Q ss_pred HhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcEEEEecCCCHHHHHHHHHcCC
Q 008626 37 LEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTIITSNIHCLSTMMKCIALGA 111 (559)
Q Consensus 37 L~~~gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPVImLSa~~d~e~v~kAi~~GA 111 (559)
.+..+..+. -+.+.+|+.+.+.. .+|+|-++- .+. .|.++++.++ .+|++.+.+- +.+.+.+.++.||
T Consensus 93 ~~~~~~~~i~gv~t~~e~~~A~~~---Gad~i~~~p-~~~--~g~~~~~~l~~~~~~~p~~a~GGI-~~~n~~~~~~~G~ 165 (190)
T cd00452 93 ANRAGIPLLPGVATPTEIMQALEL---GADIVKLFP-AEA--VGPAYIKALKGPFPQVRFMPTGGV-SLDNAAEWLAAGV 165 (190)
T ss_pred HHHcCCcEECCcCCHHHHHHHHHC---CCCEEEEcC-Ccc--cCHHHHHHHHhhCCCCeEEEeCCC-CHHHHHHHHHCCC
Confidence 333444433 66799999888755 579888753 333 3888888875 5787766555 7889999999998
Q ss_pred CEEEeC
Q 008626 112 VEFLRK 117 (559)
Q Consensus 112 ~DYLvK 117 (559)
+...+-
T Consensus 166 ~~v~v~ 171 (190)
T cd00452 166 VAVGGG 171 (190)
T ss_pred EEEEEc
Confidence 776553
No 248
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=46.72 E-value=99 Score=32.86 Aligned_cols=91 Identities=12% Similarity=0.069 Sum_probs=64.6
Q ss_pred EEEEEeCCHHHHHHHHHHHhh---C-C-CEE-EEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEE
Q 008626 19 RVLLLDQDSSAAAELKFKLEA---M-D-YIV-STFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTI 92 (559)
Q Consensus 19 rVLIVDDD~~~~~~L~~~L~~---~-g-y~V-~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVI 92 (559)
.|||-|.+-.....+...+.+ . . ..| +.+.+.+++.+.+.. .+|+|++|=.-|+ +--+.++.++.-.+|
T Consensus 178 ~vLIkdNHi~~~G~i~~av~~~r~~~~~~kIeVEvetleea~eA~~a---GaDiImLDnmspe--~l~~av~~~~~~~~l 252 (294)
T PRK06978 178 GILIKENHIAAAGGVGAALDAAFALNAGVPVQIEVETLAQLETALAH---GAQSVLLDNFTLD--MMREAVRVTAGRAVL 252 (294)
T ss_pred eEEEeHHHHHHhCCHHHHHHHHHHhCCCCcEEEEcCCHHHHHHHHHc---CCCEEEECCCCHH--HHHHHHHhhcCCeEE
Confidence 478877776665555554432 2 1 223 488999999999876 5899999986555 344455555555577
Q ss_pred EEecCCCHHHHHHHHHcCCCEE
Q 008626 93 ITSNIHCLSTMMKCIALGAVEF 114 (559)
Q Consensus 93 mLSa~~d~e~v~kAi~~GA~DY 114 (559)
-.|+.-..+.+.+..+.|++-.
T Consensus 253 EaSGGIt~~ni~~yA~tGVD~I 274 (294)
T PRK06978 253 EVSGGVNFDTVRAFAETGVDRI 274 (294)
T ss_pred EEECCCCHHHHHHHHhcCCCEE
Confidence 7888889999999999998744
No 249
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=46.71 E-value=57 Score=32.41 Aligned_cols=54 Identities=22% Similarity=0.331 Sum_probs=40.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCC--EEE-EECCHHHHHHHhhcCCCCeeEEEEecC
Q 008626 18 LRVLLLDQDSSAAAELKFKLEAMDY--IVS-TFYNENEALSAFSDKPENFHVAIVEVT 72 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy--~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~ 72 (559)
-+|++||-|......|.+-++.++. ++. ...+...+|..+... ..||+|++|-=
T Consensus 67 ~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~-~~FDlVflDPP 123 (187)
T COG0742 67 ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTR-EPFDLVFLDPP 123 (187)
T ss_pred ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCC-CcccEEEeCCC
Confidence 5799999999999999999988763 233 445556777766662 35999999963
No 250
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=46.49 E-value=1.9e+02 Score=31.19 Aligned_cols=112 Identities=11% Similarity=0.089 Sum_probs=67.0
Q ss_pred cEEEEEeCCHHHHHHHHHHH------hhCCCEE-E-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCH-----HHHHH
Q 008626 18 LRVLLLDQDSSAAAELKFKL------EAMDYIV-S-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGS-----FKFLE 84 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L------~~~gy~V-~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG-----~eLLe 84 (559)
+++=|+.|+...+..+...+ -+.||.| . ++.+...|-++..- .+ ++++=+--|= .+| -+.++
T Consensus 168 iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~---g~-~avmPl~~pI-Gsg~gv~~p~~i~ 242 (326)
T PRK11840 168 VKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDA---GA-VAVMPLGAPI-GSGLGIQNPYTIR 242 (326)
T ss_pred EEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhc---CC-EEEeeccccc-cCCCCCCCHHHHH
Confidence 34455555554444333333 2449988 4 55566666555443 33 3333211111 111 23333
Q ss_pred Hc---CCCcEEEEecCCCHHHHHHHHHcCCCEEEe-----CCCCHHHHHHHHHHHHHH
Q 008626 85 TA---KDLPTIITSNIHCLSTMMKCIALGAVEFLR-----KPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 85 ~I---rdiPVImLSa~~d~e~v~kAi~~GA~DYLv-----KPis~eeL~~iIq~vlrr 134 (559)
.+ .++|||+=.+-...+.+..|+++||++.|+ |--++..+..+.++.+..
T Consensus 243 ~~~e~~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~~av~a 300 (326)
T PRK11840 243 LIVEGATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMKLAVEA 300 (326)
T ss_pred HHHHcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceeccCCCHHHHHHHHHHHHHH
Confidence 33 379999999999999999999999999875 455666677776666644
No 251
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=46.33 E-value=76 Score=33.20 Aligned_cols=93 Identities=12% Similarity=0.078 Sum_probs=60.6
Q ss_pred EEEEEeCCHHHHHHHHHHHh----hCCC---EEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCC---
Q 008626 19 RVLLLDQDSSAAAELKFKLE----AMDY---IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKD--- 88 (559)
Q Consensus 19 rVLIVDDD~~~~~~L~~~L~----~~gy---~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ird--- 88 (559)
.|||-|.+......+...++ ..++ ..+.+.+.++|+..+.. .+|+|++|-.-++ +--++++.++.
T Consensus 154 ~vlikdnHi~~~g~i~~~v~~~k~~~p~~~~I~VEv~tleea~~A~~~---GaDiI~LDn~~~e--~l~~~v~~~~~~~~ 228 (273)
T PRK05848 154 CLMLKDTHLKHIKDLKEFIQHARKNIPFTAKIEIECESLEEAKNAMNA---GADIVMCDNMSVE--EIKEVVAYRNANYP 228 (273)
T ss_pred hhCcCHHHHHHHCcHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHc---CCCEEEECCCCHH--HHHHHHHHhhccCC
Confidence 36666666555555555554 2343 23488999999999876 5899998763222 22233333331
Q ss_pred CcEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008626 89 LPTIITSNIHCLSTMMKCIALGAVEFLR 116 (559)
Q Consensus 89 iPVImLSa~~d~e~v~kAi~~GA~DYLv 116 (559)
-..|..|+.-+.+.+.+..+.|++.+.+
T Consensus 229 ~~~ieAsGgIt~~ni~~ya~~GvD~Isv 256 (273)
T PRK05848 229 HVLLEASGNITLENINAYAKSGVDAISS 256 (273)
T ss_pred CeEEEEECCCCHHHHHHHHHcCCCEEEe
Confidence 2356678788999999999999986654
No 252
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=46.32 E-value=1.6e+02 Score=33.39 Aligned_cols=30 Identities=27% Similarity=0.349 Sum_probs=25.1
Q ss_pred CCcEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008626 88 DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (559)
Q Consensus 88 diPVImLSa~~d~e~v~kAi~~GA~DYLvK 117 (559)
++|||.=..-.....+.+|+.+||+..++=
T Consensus 344 ~v~vIadGGi~~~~di~kAla~GA~~Vm~G 373 (495)
T PTZ00314 344 GVPCIADGGIKNSGDICKALALGADCVMLG 373 (495)
T ss_pred CCeEEecCCCCCHHHHHHHHHcCCCEEEEC
Confidence 588877667778889999999999988874
No 253
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=46.17 E-value=1e+02 Score=30.07 Aligned_cols=64 Identities=11% Similarity=0.073 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhhCCCEEEEECC------HHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC--CCcEEEEecC
Q 008626 28 SAAAELKFKLEAMDYIVSTFYN------ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (559)
Q Consensus 28 ~~~~~L~~~L~~~gy~V~ta~~------~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir--diPVImLSa~ 97 (559)
.+...++..++..||.+..+.. ..++++.+.+ ..+|.||+....++ . ..++.+. ++|+|++-..
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~--~~~dgiii~~~~~~-~---~~~~~~~~~~ipvV~i~~~ 87 (270)
T cd06296 16 EVLRGVEEAAAAAGYDVVLSESGRRTSPERQWVERLSA--RRTDGVILVTPELT-S---AQRAALRRTGIPFVVVDPA 87 (270)
T ss_pred HHHHHHHHHHHHcCCeEEEecCCCchHHHHHHHHHHHH--cCCCEEEEecCCCC-h---HHHHHHhcCCCCEEEEecc
Confidence 3445666777778999875442 2256666777 67998877544433 2 3345543 7999988543
No 254
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=46.14 E-value=1e+02 Score=31.21 Aligned_cols=64 Identities=13% Similarity=0.158 Sum_probs=37.7
Q ss_pred HHHHHHHHhhCCCEEEEECC---H---HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEEEEec
Q 008626 30 AAELKFKLEAMDYIVSTFYN---E---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSN 96 (559)
Q Consensus 30 ~~~L~~~L~~~gy~V~ta~~---~---~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVImLSa 96 (559)
...+...+.+.||.+..+.+ . .+.++.+.+ ..+|-||+--...+ ....+++....++|||++..
T Consensus 75 ~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdGiI~~~~~~~-~~~~~~l~~~~~iPvV~i~~ 144 (327)
T PRK10423 75 VRGVERSCFERGYSLVLCNTEGDEQRMNRNLETLMQ--KRVDGLLLLCTETH-QPSREIMQRYPSVPTVMMDW 144 (327)
T ss_pred HHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHH--cCCCEEEEeCCCcc-hhhHHHHHhcCCCCEEEECC
Confidence 34556666778999775432 2 244555666 67887776432222 23344555445899998853
No 255
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=46.10 E-value=1e+02 Score=30.99 Aligned_cols=66 Identities=11% Similarity=0.233 Sum_probs=49.4
Q ss_pred CHHHHHHHhhcCCCCeeEEEEecCCCCCCCH--HHHHHHcC---CCcEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008626 49 NENEALSAFSDKPENFHVAIVEVTTSNTDGS--FKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (559)
Q Consensus 49 ~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG--~eLLe~Ir---diPVImLSa~~d~e~v~kAi~~GA~DYLv 116 (559)
+..+..+.+.. ....+|++|+.--+.+.| +++++.+. .+|||+--+-.+.+.+.++.+.||+..++
T Consensus 142 ~~~~~~~~~~~--~g~~ii~tdI~~dGt~~G~d~eli~~i~~~~~~pvia~GGi~s~ed~~~l~~~Ga~~viv 212 (221)
T TIGR00734 142 SLEEVRDFLNS--FDYGLIVLDIHSVGTMKGPNLELLTKTLELSEHPVMLGGGISGVEDLELLKEMGVSAVLV 212 (221)
T ss_pred cHHHHHHHHHh--cCCEEEEEECCccccCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 55556666655 234799999987552344 67787775 68998888888999999999999999886
No 256
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=45.99 E-value=1.3e+02 Score=31.45 Aligned_cols=55 Identities=15% Similarity=0.257 Sum_probs=35.3
Q ss_pred CcEEEEEeCCHH---HHHHHHHHHhhCCCEEEEECCHHHHHHH---hhcCCCCeeEEEEecC
Q 008626 17 GLRVLLLDQDSS---AAAELKFKLEAMDYIVSTFYNENEALSA---FSDKPENFHVAIVEVT 72 (559)
Q Consensus 17 glrVLIVDDD~~---~~~~L~~~L~~~gy~V~ta~~~~eAL~~---Lre~~~~pDLVIvDv~ 72 (559)
+.+|.+++-|.. ....++......+|.+..+.+..+..+. +... ..+|+||+|.-
T Consensus 103 ~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~-~~~D~ViIDt~ 163 (270)
T PRK06731 103 KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE-ARVDYILIDTA 163 (270)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhc-CCCCEEEEECC
Confidence 467888887654 3344555555678888876666444333 3331 36899999984
No 257
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=45.98 E-value=90 Score=32.09 Aligned_cols=59 Identities=10% Similarity=0.098 Sum_probs=46.2
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhCCC--EEE-EECCHHHHHHHhhcC---CCCeeEEEEecC
Q 008626 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDY--IVS-TFYNENEALSAFSDK---PENFHVAIVEVT 72 (559)
Q Consensus 14 ~p~glrVLIVDDD~~~~~~L~~~L~~~gy--~V~-ta~~~~eAL~~Lre~---~~~pDLVIvDv~ 72 (559)
++.+-+|.-+|-++...+.-+..++..|+ .|. ...++.+.|..|... ...||+|++|..
T Consensus 101 l~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDad 165 (247)
T PLN02589 101 LPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDAD 165 (247)
T ss_pred CCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCC
Confidence 45556899999999999988999998875 344 667888888777532 147999999987
No 258
>TIGR03061 pip_yhgE_Nterm YhgE/Pip N-terminal domain. This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=45.86 E-value=53 Score=30.94 Aligned_cols=55 Identities=20% Similarity=0.257 Sum_probs=39.9
Q ss_pred CCCcEEEEEeCCHHH---------HHHHHHHHhhC-CCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCC
Q 008626 15 PKGLRVLLLDQDSSA---------AAELKFKLEAM-DYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSN 75 (559)
Q Consensus 15 p~glrVLIVDDD~~~---------~~~L~~~L~~~-gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd 75 (559)
...+.|.|||.|... .+.|.+.|... .|.+.. .+.++|.+.|++ ..++.+|+ +|.
T Consensus 41 ~~~lpvaVVd~D~s~~~~~~~~~~s~~l~~~l~~~~~~~~~~-~~~~ea~~~l~~--g~~~~~iv---IP~ 105 (164)
T TIGR03061 41 LDNLPVAVVNEDKGATYDGKTLNAGDDLVKELKKNDDLDWHF-VSAKEAEKGLAD--GKYYMVIT---IPE 105 (164)
T ss_pred cCCCeEEEEECCCCCCcCCcccchHHHHHHHHhcCCCcceEE-cCHHHHHHHhHc--CcEEEEEE---ECc
Confidence 356899999988765 45666666654 455554 489999999999 77887766 565
No 259
>PRK10307 putative glycosyl transferase; Provisional
Probab=45.72 E-value=3.4e+02 Score=28.72 Aligned_cols=105 Identities=11% Similarity=0.094 Sum_probs=63.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCC-EEEEEC--CHHHHHHHhhcCCCCeeEEEEecCCCCCCC----HHHHHHHc-CC
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAMDY-IVSTFY--NENEALSAFSDKPENFHVAIVEVTTSNTDG----SFKFLETA-KD 88 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy-~V~ta~--~~~eAL~~Lre~~~~pDLVIvDv~MPd~md----G~eLLe~I-rd 88 (559)
..+++||.+.+. ...++++.+..+. +|.... +.++....+.. .|+.++=.. .+ .. ...+++.+ ..
T Consensus 259 ~~~l~ivG~g~~-~~~l~~~~~~~~l~~v~f~G~~~~~~~~~~~~~----aDi~v~ps~-~e-~~~~~~p~kl~eama~G 331 (412)
T PRK10307 259 DLIFVICGQGGG-KARLEKMAQCRGLPNVHFLPLQPYDRLPALLKM----ADCHLLPQK-AG-AADLVLPSKLTNMLASG 331 (412)
T ss_pred CeEEEEECCChh-HHHHHHHHHHcCCCceEEeCCCCHHHHHHHHHh----cCEeEEeec-cC-cccccCcHHHHHHHHcC
Confidence 378888887653 4556666665543 344333 34566666655 466555322 22 21 23455554 38
Q ss_pred CcEEEEecCCC-HHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008626 89 LPTIITSNIHC-LSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 89 iPVImLSa~~d-~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
+|||.....+. ...+ +. + ++++..|-+.++|.+.|..++.
T Consensus 332 ~PVi~s~~~g~~~~~~---i~-~-~G~~~~~~d~~~la~~i~~l~~ 372 (412)
T PRK10307 332 RNVVATAEPGTELGQL---VE-G-IGVCVEPESVEALVAAIAALAR 372 (412)
T ss_pred CCEEEEeCCCchHHHH---Hh-C-CcEEeCCCCHHHHHHHHHHHHh
Confidence 99986654332 2222 33 4 7899999999999999988764
No 260
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=45.65 E-value=1.1e+02 Score=33.61 Aligned_cols=98 Identities=14% Similarity=0.199 Sum_probs=62.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCC-CEEEEECCHHHHHHHhhcC-CCCeeEEEEecCCCCCCCHHHHHHHcC--CCcEE
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAMD-YIVSTFYNENEALSAFSDK-PENFHVAIVEVTTSNTDGSFKFLETAK--DLPTI 92 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~g-y~V~ta~~~~eAL~~Lre~-~~~pDLVIvDv~MPd~mdG~eLLe~Ir--diPVI 92 (559)
|++|||+..- -+...+...|.+.+ ++|+.++...+..+.+... ..+...+.+|+.-.+ .+.+.|+ ++-|.
T Consensus 1 m~~ilviGaG-~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~-----al~~li~~~d~VIn 74 (389)
T COG1748 1 MMKILVIGAG-GVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVD-----ALVALIKDFDLVIN 74 (389)
T ss_pred CCcEEEECCc-hhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChH-----HHHHHHhcCCEEEE
Confidence 4689999985 44555566655554 9999777766666666541 235788888884332 3344444 45555
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCH
Q 008626 93 ITSNIHCLSTMMKCIALGAVEFLRKPLSE 121 (559)
Q Consensus 93 mLSa~~d~e~v~kAi~~GA~DYLvKPis~ 121 (559)
++-..-+...+..|++.|.+ ||.=-...
T Consensus 75 ~~p~~~~~~i~ka~i~~gv~-yvDts~~~ 102 (389)
T COG1748 75 AAPPFVDLTILKACIKTGVD-YVDTSYYE 102 (389)
T ss_pred eCCchhhHHHHHHHHHhCCC-EEEcccCC
Confidence 55556677777889999976 55443333
No 261
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=45.48 E-value=96 Score=32.76 Aligned_cols=91 Identities=12% Similarity=0.087 Sum_probs=66.2
Q ss_pred EEEEEeCCHHHHHHHHHHHhh----CCCE---EEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHH--cCCC
Q 008626 19 RVLLLDQDSSAAAELKFKLEA----MDYI---VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLET--AKDL 89 (559)
Q Consensus 19 rVLIVDDD~~~~~~L~~~L~~----~gy~---V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~--Irdi 89 (559)
-|||=|.+-...-.+...+++ .+|. -+.+.+.+++.+.+.. .+|+|++|-.-|+ .--+.++. ++.-
T Consensus 160 avliKDNHia~~g~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~a---gaDiImLDNm~~e--~~~~av~~l~~~~~ 234 (280)
T COG0157 160 AVLIKDNHIAAAGSITEAVRRARAAAPFTKKIEVEVESLEEAEEALEA---GADIIMLDNMSPE--ELKEAVKLLGLAGR 234 (280)
T ss_pred eEEehhhHHHHhccHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHc---CCCEEEecCCCHH--HHHHHHHHhccCCc
Confidence 477778777777767777754 3653 2378999999999987 5899999976555 23344444 3456
Q ss_pred cEEEEecCCCHHHHHHHHHcCCCEE
Q 008626 90 PTIITSNIHCLSTMMKCIALGAVEF 114 (559)
Q Consensus 90 PVImLSa~~d~e~v~kAi~~GA~DY 114 (559)
.++=.|+.-..+.+......|++-+
T Consensus 235 ~~lEaSGgIt~~ni~~yA~tGVD~I 259 (280)
T COG0157 235 ALLEASGGITLENIREYAETGVDVI 259 (280)
T ss_pred eEEEEeCCCCHHHHHHHhhcCCCEE
Confidence 6677888889999999888888644
No 262
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=45.43 E-value=2.1e+02 Score=28.79 Aligned_cols=79 Identities=15% Similarity=0.177 Sum_probs=42.3
Q ss_pred EEEECCHHHHHHHhhc-CCCCeeEEEEecCCCCCCCHHHHHHHcC-CCc-E-EEEecCCCHHHHHHHHHcCCCEEEeCCC
Q 008626 44 VSTFYNENEALSAFSD-KPENFHVAIVEVTTSNTDGSFKFLETAK-DLP-T-IITSNIHCLSTMMKCIALGAVEFLRKPL 119 (559)
Q Consensus 44 V~ta~~~~eAL~~Lre-~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-diP-V-ImLSa~~d~e~v~kAi~~GA~DYLvKPi 119 (559)
|....+.++++..++. ....+.++=+.++.|+ .++.++.++ ..| + |-.-.--+.+.+.+++++||... +-|.
T Consensus 13 Vlr~~~~e~a~~~~~al~~~Gi~~iEit~~t~~---a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fi-vsP~ 88 (204)
T TIGR01182 13 VIRIDDVDDALPLAKALIEGGLRVLEVTLRTPV---ALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFI-VSPG 88 (204)
T ss_pred EEecCCHHHHHHHHHHHHHcCCCEEEEeCCCcc---HHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEE-ECCC
Confidence 3455556665554433 1133454444444433 666666664 222 1 22223357788899999999855 4566
Q ss_pred CHHHHHH
Q 008626 120 SEDKLRN 126 (559)
Q Consensus 120 s~eeL~~ 126 (559)
...++.+
T Consensus 89 ~~~~v~~ 95 (204)
T TIGR01182 89 LTPELAK 95 (204)
T ss_pred CCHHHHH
Confidence 5555544
No 263
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=45.34 E-value=1.8e+02 Score=32.18 Aligned_cols=99 Identities=18% Similarity=0.212 Sum_probs=61.4
Q ss_pred CCcEEEEEeC---CHHHHHHHHHHHhh-C-CCEEE--EECCHHHHHHHhhcCCCCeeEEEEecCCCC-----C--C---C
Q 008626 16 KGLRVLLLDQ---DSSAAAELKFKLEA-M-DYIVS--TFYNENEALSAFSDKPENFHVAIVEVTTSN-----T--D---G 78 (559)
Q Consensus 16 ~glrVLIVDD---D~~~~~~L~~~L~~-~-gy~V~--ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd-----~--m---d 78 (559)
.+..|++||- +......+.+.++. + +..|+ -+.+.++|..++.. .+|.|.+.+.-.. . . .
T Consensus 164 aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~a---GaD~I~vG~g~Gs~c~tr~~~g~g~p 240 (404)
T PRK06843 164 AHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISV---GADCLKVGIGPGSICTTRIVAGVGVP 240 (404)
T ss_pred cCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHc---CCCEEEECCCCCcCCcceeecCCCCC
Confidence 4677888775 22233223333333 3 23333 57888888888766 4788886542110 0 0 1
Q ss_pred HHHHH---HHc-C--CCcEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008626 79 SFKFL---ETA-K--DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (559)
Q Consensus 79 G~eLL---e~I-r--diPVImLSa~~d~e~v~kAi~~GA~DYLvK 117 (559)
-+..+ ..+ . .+|||+=..-.....+.+|+.+||+.+++=
T Consensus 241 ~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KALalGA~aVmvG 285 (404)
T PRK06843 241 QITAICDVYEVCKNTNICIIADGGIRFSGDVVKAIAAGADSVMIG 285 (404)
T ss_pred hHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 13333 332 2 699998888889999999999999998864
No 264
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=45.28 E-value=1.4e+02 Score=33.92 Aligned_cols=26 Identities=15% Similarity=0.165 Sum_probs=12.8
Q ss_pred CCcEEEEecCCCHHHHHHHHHcCCCEEE
Q 008626 88 DLPTIITSNIHCLSTMMKCIALGAVEFL 115 (559)
Q Consensus 88 diPVImLSa~~d~e~v~kAi~~GA~DYL 115 (559)
+.+||+-+.+ .+......+.||+..+
T Consensus 508 ~~~iiar~~~--~~~~~~l~~~Gad~vv 533 (558)
T PRK10669 508 DIEIIARAHY--DDEVAYITERGANQVV 533 (558)
T ss_pred CCeEEEEECC--HHHHHHHHHcCCCEEE
Confidence 5566555433 2333334456766444
No 265
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=45.16 E-value=1.1e+02 Score=33.08 Aligned_cols=51 Identities=18% Similarity=0.193 Sum_probs=36.6
Q ss_pred CcEEEEEeCCHHH-----HHHHHHHHhhCCCEEEEEC---------CHHHHHHHhhcCCCCeeEEEE
Q 008626 17 GLRVLLLDQDSSA-----AAELKFKLEAMDYIVSTFY---------NENEALSAFSDKPENFHVAIV 69 (559)
Q Consensus 17 glrVLIVDDD~~~-----~~~L~~~L~~~gy~V~ta~---------~~~eAL~~Lre~~~~pDLVIv 69 (559)
+-|+|||-|.... ...+...|+..|+++..+. +..++++.+++ ..+|+||.
T Consensus 28 ~~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~--~~~D~IIa 92 (382)
T cd08187 28 GKKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKE--EKVDFILA 92 (382)
T ss_pred CCEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHH--cCCCEEEE
Confidence 3599999876444 3567788887787766553 45567778888 78999885
No 266
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=45.08 E-value=2.3e+02 Score=29.13 Aligned_cols=98 Identities=14% Similarity=0.167 Sum_probs=56.4
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEE-EE--CCHHHHHHHhhcCCCCeeEEEEecCCCCC-----CCHHHHHHHcC---C
Q 008626 20 VLLLDQDSSAAAELKFKLEAMDYIVS-TF--YNENEALSAFSDKPENFHVAIVEVTTSNT-----DGSFKFLETAK---D 88 (559)
Q Consensus 20 VLIVDDD~~~~~~L~~~L~~~gy~V~-ta--~~~~eAL~~Lre~~~~pDLVIvDv~MPd~-----mdG~eLLe~Ir---d 88 (559)
|+|.|-.......+...+++.|...+ .+ ++..+-+..+.+....|.++++=..-.+. .+-.++++.++ +
T Consensus 119 viipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~ 198 (256)
T TIGR00262 119 VLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLKAYSA 198 (256)
T ss_pred EEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhcC
Confidence 44445444555666677777776533 22 23344444444422346666652111110 12355666665 6
Q ss_pred CcEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008626 89 LPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (559)
Q Consensus 89 iPVImLSa~~d~e~v~kAi~~GA~DYLvK 117 (559)
.||++=-+-.+.+.+.++.++||+.+++-
T Consensus 199 ~pi~vgfGI~~~e~~~~~~~~GADgvVvG 227 (256)
T TIGR00262 199 KPVLVGFGISKPEQVKQAIDAGADGVIVG 227 (256)
T ss_pred CCEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 78765444556899999999999999986
No 267
>PF07830 PP2C_C: Protein serine/threonine phosphatase 2C, C-terminal domain; InterPro: IPR012911 Protein phosphatase 2C (PP2C) is involved in regulating cellular responses to stress in various eukaryotes. It consists of two domains: an N-terminal catalytic domain and a C-terminal domain characteristic of mammalian PP2Cs. This domain consists of three antiparallel alpha helices, one of which packs against two corresponding alpha-helices of the N-terminal domain. The C-terminal domain does not seem to play a role in catalysis, but it may provide protein substrate specificity due to the cleft that is created between it and the catalytic domain []. ; GO: 0000287 magnesium ion binding, 0004721 phosphoprotein phosphatase activity, 0030145 manganese ion binding; PDB: 2P8E_A 3FXL_A 3FXO_A 1A6Q_A 3FXK_A 3FXM_A 3FXJ_A.
Probab=44.71 E-value=31 Score=29.87 Aligned_cols=39 Identities=26% Similarity=0.404 Sum_probs=22.5
Q ss_pred HHHHHHHHHhhCCCccCCCCCCCCchhHHHHHHHHcCCCCCCCC
Q 008626 509 VIDKVVKEAISKPWLPLPLGLKPPSADSVLAELSRQGISTIPPR 552 (559)
Q Consensus 509 ~~d~~~~~~~~~pw~plp~glk~p~~~~v~~el~~qg~~~~p~~ 552 (559)
.|.+-|.|+|.+-. .-..|++..||..|+..-|++.||.
T Consensus 27 ~l~~rv~ei~~~~~-----~~~~~~l~~V~~~L~~e~ip~LPPG 65 (81)
T PF07830_consen 27 YLEQRVEEIIEKSS-----EEENPDLVYVMRTLASEDIPGLPPG 65 (81)
T ss_dssp HHHHHHHHHT---------------HHHHHHHHHHTT-SS--TT
T ss_pred HHHHHHHHHHHHhc-----ccCCCCHHHHHHHHHhccCCCCcCC
Confidence 34556788998832 3567899999999999999999996
No 268
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=44.05 E-value=2.3e+02 Score=28.10 Aligned_cols=75 Identities=13% Similarity=0.187 Sum_probs=50.6
Q ss_pred CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHH
Q 008626 49 NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNL 127 (559)
Q Consensus 49 ~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~i 127 (559)
..++..+.+.. .|++|.-.. .+ .-|..+++.+. .+|||..- ... ..+.+..+-++++..+.+.++|...
T Consensus 256 ~~~~~~~~~~~----~d~~l~~s~-~e-~~~~~~lEa~a~g~PvI~~~-~~~---~~~~i~~~~~g~~~~~~~~~~l~~~ 325 (364)
T cd03814 256 DGEELAAAYAS----ADVFVFPSR-TE-TFGLVVLEAMASGLPVVAPD-AGG---PADIVTDGENGLLVEPGDAEAFAAA 325 (364)
T ss_pred CHHHHHHHHHh----CCEEEECcc-cc-cCCcHHHHHHHcCCCEEEcC-CCC---chhhhcCCcceEEcCCCCHHHHHHH
Confidence 45555555555 577775433 23 45677888875 89987543 332 2334566778999999999999999
Q ss_pred HHHHHH
Q 008626 128 WQHVVH 133 (559)
Q Consensus 128 Iq~vlr 133 (559)
+..++.
T Consensus 326 i~~l~~ 331 (364)
T cd03814 326 LAALLA 331 (364)
T ss_pred HHHHHc
Confidence 887764
No 269
>CHL00101 trpG anthranilate synthase component 2
Probab=43.94 E-value=25 Score=34.12 Aligned_cols=48 Identities=23% Similarity=0.254 Sum_probs=34.7
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEE
Q 008626 20 VLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIV 69 (559)
Q Consensus 20 VLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIv 69 (559)
|||||.....-..|.+.|+..|+.+..+......+..+.. ..||.||+
T Consensus 2 iliid~~dsft~~l~~~l~~~g~~~~v~~~~~~~~~~~~~--~~~dgiii 49 (190)
T CHL00101 2 ILIIDNYDSFTYNLVQSLGELNSDVLVCRNDEIDLSKIKN--LNIRHIII 49 (190)
T ss_pred EEEEECCCchHHHHHHHHHhcCCCEEEEECCCCCHHHHhh--CCCCEEEE
Confidence 8999999999999999999999888866644322223333 35787775
No 270
>PRK05670 anthranilate synthase component II; Provisional
Probab=43.80 E-value=28 Score=33.65 Aligned_cols=48 Identities=21% Similarity=0.230 Sum_probs=34.1
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEE
Q 008626 20 VLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIV 69 (559)
Q Consensus 20 VLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIv 69 (559)
|||||.....-..+.+.|++.|+++..+.........+.. ..||.||+
T Consensus 2 iliid~~d~f~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~--~~~dglIl 49 (189)
T PRK05670 2 ILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIEA--LNPDAIVL 49 (189)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEECCCCCHHHHHh--CCCCEEEE
Confidence 8999999999999999999999887765443211222333 34787776
No 271
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=43.78 E-value=21 Score=36.36 Aligned_cols=63 Identities=11% Similarity=0.141 Sum_probs=51.3
Q ss_pred cEEEEEe-CCHHHHHHHHHHHhhCCCEEE---EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHH
Q 008626 18 LRVLLLD-QDSSAAAELKFKLEAMDYIVS---TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFK 81 (559)
Q Consensus 18 lrVLIVD-DD~~~~~~L~~~L~~~gy~V~---ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~e 81 (559)
.+|=.|. ......+.|...|.++||+|. .+++...|.++++++.-+|-+++-|-.|++ .+|++
T Consensus 40 ~kVkFvTNttk~Sk~~l~~rL~rlgf~v~eeei~tsl~aa~~~~~~~~lrP~l~v~d~a~~d-F~gid 106 (262)
T KOG3040|consen 40 VKVKFVTNTTKESKRNLHERLQRLGFDVSEEEIFTSLPAARQYLEENQLRPYLIVDDDALED-FDGID 106 (262)
T ss_pred ceEEEEecCcchhHHHHHHHHHHhCCCccHHHhcCccHHHHHHHHhcCCCceEEEcccchhh-CCCcc
Confidence 3444444 445677888999999999887 688888999999997788999999999999 88865
No 272
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=43.62 E-value=55 Score=32.04 Aligned_cols=44 Identities=11% Similarity=0.117 Sum_probs=35.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEE
Q 008626 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIV 69 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIv 69 (559)
|+|+|||-.......+.+.|+..|+++....+..+ + ..+|.||+
T Consensus 1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~----~----~~~d~iii 44 (200)
T PRK13143 1 MMIVIIDYGVGNLRSVSKALERAGAEVVITSDPEE----I----LDADGIVL 44 (200)
T ss_pred CeEEEEECCCccHHHHHHHHHHCCCeEEEECCHHH----H----ccCCEEEE
Confidence 58999998888889999999999999888765422 2 24788777
No 273
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=43.44 E-value=98 Score=31.44 Aligned_cols=79 Identities=13% Similarity=0.204 Sum_probs=51.6
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhCCC--EEEEEC--CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHH-HHcCC
Q 008626 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDY--IVSTFY--NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFL-ETAKD 88 (559)
Q Consensus 14 ~p~glrVLIVDDD~~~~~~L~~~L~~~gy--~V~ta~--~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLL-e~Ird 88 (559)
+|..-++.-+|-|+...+..++.|++.|+ +|...- ++.+.++.... ..||+|++|..=+.+-.-++.+ ..++.
T Consensus 81 l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~--~~fDliFIDadK~~yp~~le~~~~lLr~ 158 (219)
T COG4122 81 LPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLD--GSFDLVFIDADKADYPEYLERALPLLRP 158 (219)
T ss_pred CCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccC--CCccEEEEeCChhhCHHHHHHHHHHhCC
Confidence 45344899999999999999999999876 344333 55555554223 6899999999655422234433 33444
Q ss_pred CcEEEE
Q 008626 89 LPTIIT 94 (559)
Q Consensus 89 iPVImL 94 (559)
--||++
T Consensus 159 GGliv~ 164 (219)
T COG4122 159 GGLIVA 164 (219)
T ss_pred CcEEEE
Confidence 445543
No 274
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=43.30 E-value=1.5e+02 Score=29.63 Aligned_cols=97 Identities=12% Similarity=0.181 Sum_probs=55.0
Q ss_pred EEEEEeCCHHHHHHHHHHHhh--CCC-------------EEEEECCHHHHHHHhhc-CCCCeeEEEEecCC-CCCCCHHH
Q 008626 19 RVLLLDQDSSAAAELKFKLEA--MDY-------------IVSTFYNENEALSAFSD-KPENFHVAIVEVTT-SNTDGSFK 81 (559)
Q Consensus 19 rVLIVDDD~~~~~~L~~~L~~--~gy-------------~V~ta~~~~eAL~~Lre-~~~~pDLVIvDv~M-Pd~mdG~e 81 (559)
+..||..=+..++.+.++|.- .|| .|..+.+.++|++.+++ ....|-+|-+|..- ++ .-+++
T Consensus 44 ~yyiVtPl~~Q~~l~~ril~hW~~G~G~~yNp~R~eAl~~v~~~~sle~a~~~I~~~~G~~P~~v~TsAr~~~~-~is~~ 122 (185)
T PF09936_consen 44 GYYIVTPLEAQRELAERILGHWQEGYGAEYNPDRKEALSLVRVVDSLEEAIEDIEEEEGKRPLLVATSARKYPN-TISYA 122 (185)
T ss_dssp EEEEE---HHHHHHHHHHHHHHHTSGGGGT-SSSHHHHTTEEEESSHHHHHHHHHHHHSS--EEEE--SS--SS--B-HH
T ss_pred CEEEecchHHHHHHHHHHHHhcccCCCcCcCcCHHHHHhHhccHhhHHHHHHHHHHHhCCCCEEEEecCcCCCC-CcCHH
Confidence 678888888888888888863 332 27799999999999976 33579999999984 33 34565
Q ss_pred HHHH-c--CCCcEEEE--ecCCCHHHHHHHHHcCCCEEEeCCCCH
Q 008626 82 FLET-A--KDLPTIIT--SNIHCLSTMMKCIALGAVEFLRKPLSE 121 (559)
Q Consensus 82 LLe~-I--rdiPVImL--Sa~~d~e~v~kAi~~GA~DYLvKPis~ 121 (559)
-+++ + .+-|++++ |+.+-.+.++ ..+||++.|+.-
T Consensus 123 ~lr~~l~~~~~P~LllFGTGwGL~~ev~-----~~~D~iLePI~g 162 (185)
T PF09936_consen 123 ELRRMLEEEDRPVLLLFGTGWGLAPEVM-----EQCDYILEPIRG 162 (185)
T ss_dssp HHHHHHHH--S-EEEEE--TT---HHHH-----TT-SEEB--TTT
T ss_pred HHHHHHhccCCeEEEEecCCCCCCHHHH-----HhcCeeEccccc
Confidence 5544 4 37787777 4555444442 367899999864
No 275
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=43.24 E-value=2e+02 Score=30.70 Aligned_cols=97 Identities=15% Similarity=0.184 Sum_probs=56.9
Q ss_pred CCcEEEEEeC---C-HHHHHHHHHHHhhCC-CEEE--EECCHHHHHHHhhcCCCCeeEEEEecCCCC-----------CC
Q 008626 16 KGLRVLLLDQ---D-SSAAAELKFKLEAMD-YIVS--TFYNENEALSAFSDKPENFHVAIVEVTTSN-----------TD 77 (559)
Q Consensus 16 ~glrVLIVDD---D-~~~~~~L~~~L~~~g-y~V~--ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd-----------~m 77 (559)
.+..+++||- + ....+.++.+=+... ..|. .+.+.+.|..++.. ..|.|++.+. |+ ..
T Consensus 105 agv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~a---GaD~I~vg~g-~G~~~~t~~~~g~g~ 180 (325)
T cd00381 105 AGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDA---GADGVKVGIG-PGSICTTRIVTGVGV 180 (325)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhc---CCCEEEECCC-CCcCcccceeCCCCC
Confidence 3567777764 2 223333333323322 3443 56788888777654 5788886321 10 00
Q ss_pred CHHHHHHHc----C--CCcEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008626 78 GSFKFLETA----K--DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (559)
Q Consensus 78 dG~eLLe~I----r--diPVImLSa~~d~e~v~kAi~~GA~DYLv 116 (559)
.-+.++..+ . ++|||.--.-.+...+.+++.+||+...+
T Consensus 181 p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~Vmi 225 (325)
T cd00381 181 PQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVML 225 (325)
T ss_pred CHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEe
Confidence 112222222 2 58988666677888999999999999876
No 276
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=43.18 E-value=2.7e+02 Score=28.83 Aligned_cols=106 Identities=14% Similarity=0.139 Sum_probs=65.8
Q ss_pred CcEEEEEeCCH-------HHHHHHHHHHhh-CCC--EEEEEC--CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHH
Q 008626 17 GLRVLLLDQDS-------SAAAELKFKLEA-MDY--IVSTFY--NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLE 84 (559)
Q Consensus 17 glrVLIVDDD~-------~~~~~L~~~L~~-~gy--~V~ta~--~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe 84 (559)
..+++++.+.+ .....+...++. .+. .|.... ...+....+.. .|++|+-... + .-|.-+++
T Consensus 245 ~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~~~~~~~~~l~~----ad~~l~~s~~-E-~~g~~~lE 318 (392)
T cd03805 245 NVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSISDSQKELLLSS----ARALLYTPSN-E-HFGIVPLE 318 (392)
T ss_pred CeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCCChHHHHHHHhh----CeEEEECCCc-C-CCCchHHH
Confidence 57788887532 234556666665 443 344332 34444555555 5877764332 3 34667777
Q ss_pred HcC-CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008626 85 TAK-DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 85 ~Ir-diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
.+. .+|||..-..... +.+..|.++|+..+ +.+++.+.+..++.
T Consensus 319 Ama~G~PvI~s~~~~~~----e~i~~~~~g~~~~~-~~~~~a~~i~~l~~ 363 (392)
T cd03805 319 AMYAGKPVIACNSGGPL----ETVVDGETGFLCEP-TPEEFAEAMLKLAN 363 (392)
T ss_pred HHHcCCCEEEECCCCcH----HHhccCCceEEeCC-CHHHHHHHHHHHHh
Confidence 775 8999865433332 34566788999876 99999988887764
No 277
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=42.93 E-value=1.4e+02 Score=28.90 Aligned_cols=64 Identities=13% Similarity=0.168 Sum_probs=39.2
Q ss_pred HHHHHHHHHhhCCCEEEEECC---HH---HHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC--CCcEEEEecC
Q 008626 29 AAAELKFKLEAMDYIVSTFYN---EN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (559)
Q Consensus 29 ~~~~L~~~L~~~gy~V~ta~~---~~---eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir--diPVImLSa~ 97 (559)
+...+.+.++..||.+..+.. .. ++++.+.. ..+|.||+....+. ..++++.+. .+|+|++...
T Consensus 17 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiii~~~~~~---~~~~~~~~~~~~ipvV~~~~~ 88 (266)
T cd06282 17 CVQGIQEEARAAGYSLLLATTDYDAEREADAVETLLR--QRVDGLILTVADAA---TSPALDLLDAERVPYVLAYND 88 (266)
T ss_pred HHHHHHHHHHHCCCEEEEeeCCCCHHHHHHHHHHHHh--cCCCEEEEecCCCC---chHHHHHHhhCCCCEEEEecc
Confidence 345566677778999886532 22 45555555 67898887543333 234555553 7999888543
No 278
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=42.82 E-value=1.1e+02 Score=32.91 Aligned_cols=50 Identities=14% Similarity=0.100 Sum_probs=35.9
Q ss_pred cEEEEEeCCHH-----HHHHHHHHHhhCCCEEEEE---------CCHHHHHHHhhcCCCCeeEEEE
Q 008626 18 LRVLLLDQDSS-----AAAELKFKLEAMDYIVSTF---------YNENEALSAFSDKPENFHVAIV 69 (559)
Q Consensus 18 lrVLIVDDD~~-----~~~~L~~~L~~~gy~V~ta---------~~~~eAL~~Lre~~~~pDLVIv 69 (559)
-|||||.|... ....+...|+..|+++..+ .+..++.+.+++ ..+|+||-
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~--~~~D~Iia 89 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALARE--EGCDFVVG 89 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHH--cCCCEEEE
Confidence 58999988654 3356777787777766544 345677778888 78999985
No 279
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=42.69 E-value=86 Score=33.05 Aligned_cols=91 Identities=12% Similarity=0.022 Sum_probs=62.9
Q ss_pred EEEEeCCHHHHHHHHHHHhh----CCC---EEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEE
Q 008626 20 VLLLDQDSSAAAELKFKLEA----MDY---IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTI 92 (559)
Q Consensus 20 VLIVDDD~~~~~~L~~~L~~----~gy---~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVI 92 (559)
|||-|.+-.....+...+++ .++ ..+.+.+.++|.+.+.. .+|+|++|-.-|+ +--+.++.++..-+|
T Consensus 167 vlikdNHi~~~G~i~~ai~~~r~~~~~~~kIeVEv~tleea~ea~~~---gaDiI~LDn~s~e--~l~~av~~~~~~~~l 241 (281)
T PRK06106 167 VLIKDNHIAIAGGVREAIRRARAGVGHLVKIEVEVDTLDQLEEALEL---GVDAVLLDNMTPD--TLREAVAIVAGRAIT 241 (281)
T ss_pred hccCHHHHHHhCcHHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHHc---CCCEEEeCCCCHH--HHHHHHHHhCCCceE
Confidence 66666665555445555532 332 34588999999999866 5899999975444 344455555544458
Q ss_pred EEecCCCHHHHHHHHHcCCCEEE
Q 008626 93 ITSNIHCLSTMMKCIALGAVEFL 115 (559)
Q Consensus 93 mLSa~~d~e~v~kAi~~GA~DYL 115 (559)
..|+.-+.+.+.+....|++-+-
T Consensus 242 eaSGGI~~~ni~~yA~tGVD~Is 264 (281)
T PRK06106 242 EASGRITPETAPAIAASGVDLIS 264 (281)
T ss_pred EEECCCCHHHHHHHHhcCCCEEE
Confidence 88999999999999999987543
No 280
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=42.64 E-value=3.5e+02 Score=27.42 Aligned_cols=88 Identities=13% Similarity=0.139 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhhCCCEEE-EE-----CCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CCcEEEEecCCC
Q 008626 27 SSAAAELKFKLEAMDYIVS-TF-----YNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIHC 99 (559)
Q Consensus 27 ~~~~~~L~~~L~~~gy~V~-ta-----~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-diPVImLSa~~d 99 (559)
+.....+.+.+++.++-|+ .. .+..+..+.+.+ ...|.|-++...++..--++.++.++ ++|||..-.-.+
T Consensus 125 p~~l~eiv~avr~~~~pVsvKir~g~~~~~~~la~~l~~--aG~d~ihv~~~~~g~~ad~~~I~~i~~~ipVIgnGgI~s 202 (233)
T cd02911 125 PERLSEFIKALKETGVPVSVKIRAGVDVDDEELARLIEK--AGADIIHVDAMDPGNHADLKKIRDISTELFIIGNNSVTT 202 (233)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEcCCcCcCHHHHHHHHHH--hCCCEEEECcCCCCCCCcHHHHHHhcCCCEEEEECCcCC
Confidence 3333333344444555444 22 245555566666 56787766654433112367888885 899998888889
Q ss_pred HHHHHHHHHcCCCEEEe
Q 008626 100 LSTMMKCIALGAVEFLR 116 (559)
Q Consensus 100 ~e~v~kAi~~GA~DYLv 116 (559)
.+.+.+++..||+...+
T Consensus 203 ~eda~~~l~~GaD~Vmi 219 (233)
T cd02911 203 IESAKEMFSYGADMVSV 219 (233)
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 99999999999988765
No 281
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=42.57 E-value=1.1e+02 Score=32.33 Aligned_cols=92 Identities=12% Similarity=0.105 Sum_probs=60.0
Q ss_pred EEEEEeCCHHHHHHHHHHHh----hCCC--EEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----
Q 008626 19 RVLLLDQDSSAAAELKFKLE----AMDY--IVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---- 87 (559)
Q Consensus 19 rVLIVDDD~~~~~~L~~~L~----~~gy--~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir---- 87 (559)
.|||-|.+-.....+...+. ..++ .|. .+.+.+||.+.+.. .+|+|.+|-.-++ +--+.++.++
T Consensus 168 ~ilikdNHi~~~g~i~~av~~~r~~~~~~~~I~VEv~tleea~eA~~~---GaD~I~LDn~~~e--~l~~av~~~~~~~~ 242 (288)
T PRK07428 168 AVMIKDNHIQAAGGIGEAITRIRQRIPYPLTIEVETETLEQVQEALEY---GADIIMLDNMPVD--LMQQAVQLIRQQNP 242 (288)
T ss_pred eeeecHHHHHHhCCHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHc---CCCEEEECCCCHH--HHHHHHHHHHhcCC
Confidence 47777776555544555443 2443 343 78999999998865 6899999943332 2223344442
Q ss_pred CCcEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008626 88 DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (559)
Q Consensus 88 diPVImLSa~~d~e~v~kAi~~GA~DYLv 116 (559)
+++ |..|+.-+.+.+.+....|++..-+
T Consensus 243 ~i~-leAsGGIt~~ni~~ya~tGvD~Isv 270 (288)
T PRK07428 243 RVK-IEASGNITLETIRAVAETGVDYISS 270 (288)
T ss_pred CeE-EEEECCCCHHHHHHHHHcCCCEEEE
Confidence 344 5567777899999999999986654
No 282
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=42.56 E-value=1.5e+02 Score=34.24 Aligned_cols=97 Identities=12% Similarity=0.136 Sum_probs=68.6
Q ss_pred HHHHHHHHhhCCCEEE--EECCHHHHHHHhhcCCCCeeEEEEecCCCCC----CCHHHHHHHcC------CCcEEEEecC
Q 008626 30 AAELKFKLEAMDYIVS--TFYNENEALSAFSDKPENFHVAIVEVTTSNT----DGSFKFLETAK------DLPTIITSNI 97 (559)
Q Consensus 30 ~~~L~~~L~~~gy~V~--ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~----mdG~eLLe~Ir------diPVImLSa~ 97 (559)
.......|+..||.+. -+.++-..+..|.. -.+|.|-+|-.+-.. .....+++.+. ++.|| ...-
T Consensus 680 ~~~~l~~l~~~G~~i~ld~fg~~~~~~~~l~~--l~~d~iKid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vi-a~gV 756 (799)
T PRK11359 680 IFKRIQILRDMGVGLSVDDFGTGFSGLSRLVS--LPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTVV-AEGV 756 (799)
T ss_pred HHHHHHHHHHCCCEEEEECCCCchhhHHHHhh--CCCCEEEECHHHHhhcccChhHHHHHHHHHHHHHHCCCeEE-EEcC
Confidence 3445556778899887 46788888888888 679999999865220 11234454442 56655 5567
Q ss_pred CCHHHHHHHHHcCCC----EEEeCCCCHHHHHHHHH
Q 008626 98 HCLSTMMKCIALGAV----EFLRKPLSEDKLRNLWQ 129 (559)
Q Consensus 98 ~d~e~v~kAi~~GA~----DYLvKPis~eeL~~iIq 129 (559)
++.+....+.+.|++ .|+.||...++|...++
T Consensus 757 e~~~~~~~l~~~g~~~~QG~~~~~p~~~~~~~~~~~ 792 (799)
T PRK11359 757 ETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMS 792 (799)
T ss_pred CCHHHHHHHHhcCCCEEeeCeecCCCCHHHHHHHHH
Confidence 778888888999986 35779999999988543
No 283
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=42.55 E-value=66 Score=33.25 Aligned_cols=53 Identities=9% Similarity=0.204 Sum_probs=40.8
Q ss_pred HHHHHHHcC----CCcEEEEecC------CCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Q 008626 79 SFKFLETAK----DLPTIITSNI------HCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHV 131 (559)
Q Consensus 79 G~eLLe~Ir----diPVImLSa~------~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~v 131 (559)
.|++++.++ ++|+|+|+-. +-...+.++.++|+++.|+-.+..++....+..+
T Consensus 76 ~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~ 138 (258)
T PRK13111 76 VFELVREIREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAA 138 (258)
T ss_pred HHHHHHHHHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHH
Confidence 466777776 6899999854 4445688999999999999888888777655444
No 284
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=42.43 E-value=85 Score=30.61 Aligned_cols=67 Identities=21% Similarity=0.146 Sum_probs=43.9
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCE--EE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHc
Q 008626 19 RVLLLDQDSSAAAELKFKLEAMDYI--VS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA 86 (559)
Q Consensus 19 rVLIVDDD~~~~~~L~~~L~~~gy~--V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~I 86 (559)
.|..||.++...+.+++-++..++. +. ...+..+++..+......+|+|++|--... ....++++.+
T Consensus 74 ~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~-~~~~~~l~~l 143 (189)
T TIGR00095 74 VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFFN-GALQALLELC 143 (189)
T ss_pred EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECcCCCC-CcHHHHHHHH
Confidence 7999999999999999988877653 33 555666666554331124799999875443 2233444433
No 285
>PF00497 SBP_bac_3: Bacterial extracellular solute-binding proteins, family 3; InterPro: IPR001638 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins (ABC transporters; see IPR003439 from INTERPRO) and a high affinity periplasmic solute-binding protein. The latter are thought to bind the substrate in the vicinity of the inner membrane, and to transfer it to a complex of inner membrane proteins for concentration into the cytoplasm. In Gram-positive bacteria which are surrounded by a single membrane and have therefore no periplasmic region, the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute throught the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition, at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped [] into eight families or clusters, which generally correlate with the nature of the solute bound. Family 3 groups together specific amino acids and opine-binding periplasmic proteins and a periplasmic homologue with catalytic activity.; GO: 0005215 transporter activity, 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 3N26_A 3QAX_A 3I6V_A 2VHA_B 2IA4_B 2Q89_A 2Q88_A 2YJP_C 1II5_A 1IIW_A ....
Probab=42.23 E-value=91 Score=28.97 Aligned_cols=103 Identities=16% Similarity=0.148 Sum_probs=61.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEEEEe
Q 008626 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITS 95 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVImLS 95 (559)
.+.+|.++.... ....+...+.. +.+++.+.+..+++++|.. .+.|.+|.|.. ....++.......+....
T Consensus 109 ~~~~i~~~~g~~-~~~~l~~~~~~-~~~~~~~~~~~~~~~~l~~--g~~d~~i~~~~-----~~~~~~~~~~~~~~~~~~ 179 (225)
T PF00497_consen 109 KGKRIGVVRGSS-YADYLKQQYPS-NINIVEVDSPEEALEALLS--GRIDAFIVDES-----TAEYLLKRHPLENIVVIP 179 (225)
T ss_dssp TTSEEEEETTSH-HHHHHHHHTHH-TSEEEEESSHHHHHHHHHT--TSSSEEEEEHH-----HHHHHHHHTTTCEEEEEE
T ss_pred cCcccccccchh-HHHHhhhhccc-hhhhcccccHHHHHHHHhc--CCeeeeeccch-----hhhhhhhhcccccccccc
Confidence 457888888854 44455655543 6788899999999999999 88999999773 233344444322222211
Q ss_pred cCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHh
Q 008626 96 NIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFN 137 (559)
Q Consensus 96 a~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~~ 137 (559)
... ...+.. +...+ ...+|+..+...+....+
T Consensus 180 ~~~--------~~~~~~-~~~~~-~~~~l~~~~n~~i~~l~~ 211 (225)
T PF00497_consen 180 PPI--------SPSPVY-FAVRK-KNPELLEIFNKAIRELKQ 211 (225)
T ss_dssp EEE--------EEEEEE-EEEET-TTHHHHHHHHHHHHHHHH
T ss_pred ccc--------ccceeE-Eeecc-cccHHHHHHHHHHHHHHh
Confidence 100 001111 22223 446788888888776544
No 286
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=42.20 E-value=43 Score=34.04 Aligned_cols=39 Identities=15% Similarity=0.173 Sum_probs=33.1
Q ss_pred CCcEEEEec------CCCHHHHHHHHHcCCCEEEeCCCCHHHHHH
Q 008626 88 DLPTIITSN------IHCLSTMMKCIALGAVEFLRKPLSEDKLRN 126 (559)
Q Consensus 88 diPVImLSa------~~d~e~v~kAi~~GA~DYLvKPis~eeL~~ 126 (559)
.+|||+|.- +++...+..+.++||++||+--+.+||-..
T Consensus 95 t~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~ 139 (268)
T KOG4175|consen 95 TCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAET 139 (268)
T ss_pred ccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHH
Confidence 489999986 467788999999999999999888887554
No 287
>PLN02939 transferase, transferring glycosyl groups
Probab=41.77 E-value=1.8e+02 Score=35.83 Aligned_cols=111 Identities=11% Similarity=0.062 Sum_probs=66.8
Q ss_pred CcEEEEEeCCH--HHHHHHHHHHhhCCC--EEEEECCHHHH--HHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CC
Q 008626 17 GLRVLLLDQDS--SAAAELKFKLEAMDY--IVSTFYNENEA--LSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DL 89 (559)
Q Consensus 17 glrVLIVDDD~--~~~~~L~~~L~~~gy--~V~ta~~~~eA--L~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-di 89 (559)
+.+++|+.+.+ .....+..+....+. .|.......+. -.++.. .|++|+=-. -+ .-|+-.++.++ .+
T Consensus 808 dvqLVIvGdGp~~~~e~eL~~La~~l~l~drV~FlG~~de~lah~IYAa----ADIFLmPSr-~E-PfGLvqLEAMAyGt 881 (977)
T PLN02939 808 GGQFVLLGSSPVPHIQREFEGIADQFQSNNNIRLILKYDEALSHSIYAA----SDMFIIPSM-FE-PCGLTQMIAMRYGS 881 (977)
T ss_pred CCEEEEEeCCCcHHHHHHHHHHHHHcCCCCeEEEEeccCHHHHHHHHHh----CCEEEECCC-cc-CCcHHHHHHHHCCC
Confidence 46788887653 334555555555432 34433322333 234433 688887433 34 56888888876 67
Q ss_pred cEEEEecCCCHHHHHHH-----HHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008626 90 PTIITSNIHCLSTMMKC-----IALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 90 PVImLSa~~d~e~v~kA-----i~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
|+|+....+-.+.+... ...|.++|+..|.+.++|..++.+++.
T Consensus 882 PPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~~~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 882 VPIVRKTGGLNDSVFDFDDETIPVELRNGFTFLTPDEQGLNSALERAFN 930 (977)
T ss_pred CEEEecCCCCcceeecCCccccccCCCceEEecCCCHHHHHHHHHHHHH
Confidence 77755443433444321 123789999999999999999887765
No 288
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=41.61 E-value=2.1e+02 Score=25.62 Aligned_cols=96 Identities=18% Similarity=0.106 Sum_probs=57.7
Q ss_pred EEEEeC-CHHHHHHHHHHHhhCCCEEEEEC--CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEEEEec
Q 008626 20 VLLLDQ-DSSAAAELKFKLEAMDYIVSTFY--NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSN 96 (559)
Q Consensus 20 VLIVDD-D~~~~~~L~~~L~~~gy~V~ta~--~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVImLSa 96 (559)
|||.+. ++...+.|++ +|+|..+. +.++..+.+.. +|++|+-..- . -.-++++.+..+.+|...+
T Consensus 1 ili~~~~~~~~~~~l~~-----~~~v~~~~~~~~~~~~~~l~~----~d~ii~~~~~-~--~~~~~l~~~~~Lk~I~~~~ 68 (133)
T PF00389_consen 1 ILITDPLPDEEIERLEE-----GFEVEFCDSPSEEELAERLKD----ADAIIVGSGT-P--LTAEVLEAAPNLKLISTAG 68 (133)
T ss_dssp EEESSS-SHHHHHHHHH-----TSEEEEESSSSHHHHHHHHTT----ESEEEESTTS-T--BSHHHHHHHTT-SEEEESS
T ss_pred eEEeccCCHHHHHHHHC-----CceEEEeCCCCHHHHHHHhCC----CeEEEEcCCC-C--cCHHHHhccceeEEEEEcc
Confidence 566664 5555555555 77777655 45555666655 8999985532 1 2356778888899888766
Q ss_pred CC-CHHHHHHHHHcCCCEEEeCCCCHHHHHHH
Q 008626 97 IH-CLSTMMKCIALGAVEFLRKPLSEDKLRNL 127 (559)
Q Consensus 97 ~~-d~e~v~kAi~~GA~DYLvKPis~eeL~~i 127 (559)
-+ +.-.+..+-+.|..=.-......+.+.+.
T Consensus 69 ~G~d~id~~~a~~~gI~V~n~~g~~~~aVAE~ 100 (133)
T PF00389_consen 69 AGVDNIDLEAAKERGIPVTNVPGYNAEAVAEH 100 (133)
T ss_dssp SSCTTB-HHHHHHTTSEEEE-TTTTHHHHHHH
T ss_pred cccCcccHHHHhhCeEEEEEeCCcCCcchhcc
Confidence 44 22345667778876555555666554443
No 289
>PLN02476 O-methyltransferase
Probab=41.50 E-value=1.1e+02 Score=32.24 Aligned_cols=81 Identities=16% Similarity=0.183 Sum_probs=53.8
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhCCCE--EE-EECCHHHHHHHhhcC--CCCeeEEEEecCCCCCCCHHHH-HHHcC
Q 008626 14 FPKGLRVLLLDQDSSAAAELKFKLEAMDYI--VS-TFYNENEALSAFSDK--PENFHVAIVEVTTSNTDGSFKF-LETAK 87 (559)
Q Consensus 14 ~p~glrVLIVDDD~~~~~~L~~~L~~~gy~--V~-ta~~~~eAL~~Lre~--~~~pDLVIvDv~MPd~mdG~eL-Le~Ir 87 (559)
++..-+|.-+|-++...+..+..+++.|+. |. ...++.+.|..+..+ ...||+|++|..=..+.+-++. ++.++
T Consensus 140 l~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~ 219 (278)
T PLN02476 140 LPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDADKRMYQDYFELLLQLVR 219 (278)
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEEECCCHHHHHHHHHHHHHhcC
Confidence 444457999999999999999999998874 44 667888888766421 1479999999863221222343 33344
Q ss_pred CCcEEEE
Q 008626 88 DLPTIIT 94 (559)
Q Consensus 88 diPVImL 94 (559)
.--+|++
T Consensus 220 ~GGvIV~ 226 (278)
T PLN02476 220 VGGVIVM 226 (278)
T ss_pred CCcEEEE
Confidence 4444444
No 290
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=41.35 E-value=4.7e+02 Score=28.73 Aligned_cols=99 Identities=10% Similarity=0.100 Sum_probs=59.0
Q ss_pred HHHHHHhhCCCEEEE----ECCHHHHHHHhhcCCCCeeEEEEecCC----CCCCCHHHHHHHcC---CCcEEEEecCCCH
Q 008626 32 ELKFKLEAMDYIVST----FYNENEALSAFSDKPENFHVAIVEVTT----SNTDGSFKFLETAK---DLPTIITSNIHCL 100 (559)
Q Consensus 32 ~L~~~L~~~gy~V~t----a~~~~eAL~~Lre~~~~pDLVIvDv~M----Pd~mdG~eLLe~Ir---diPVImLSa~~d~ 100 (559)
.+.+.+++.|..+.. +.+..+.+..+.+ ...|.|.+.... .. ..+++.++.++ ++||++.-+- ..
T Consensus 98 ~~i~~a~~~G~~~~~g~~s~~t~~e~~~~a~~--~GaD~I~~~pg~~~~~~~-~~~~~~l~~l~~~~~iPI~a~GGI-~~ 173 (430)
T PRK07028 98 DAVRAARKYGVRLMADLINVPDPVKRAVELEE--LGVDYINVHVGIDQQMLG-KDPLELLKEVSEEVSIPIAVAGGL-DA 173 (430)
T ss_pred HHHHHHHHcCCEEEEEecCCCCHHHHHHHHHh--cCCCEEEEEeccchhhcC-CChHHHHHHHHhhCCCcEEEECCC-CH
Confidence 344455556655442 2343444444444 457888765321 11 34577777775 5888776554 67
Q ss_pred HHHHHHHHcCCCEEE-----eCCCCHHHHHHHHHHHHHH
Q 008626 101 STMMKCIALGAVEFL-----RKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 101 e~v~kAi~~GA~DYL-----vKPis~eeL~~iIq~vlrr 134 (559)
+.+.+++..||+.+. .+.-++.+....++..+++
T Consensus 174 ~n~~~~l~aGAdgv~vGsaI~~~~d~~~~~~~l~~~i~~ 212 (430)
T PRK07028 174 ETAAKAVAAGADIVIVGGNIIKSADVTEAARKIREAIDS 212 (430)
T ss_pred HHHHHHHHcCCCEEEEChHHcCCCCHHHHHHHHHHHHhc
Confidence 888999999998664 4444556665555555544
No 291
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=41.27 E-value=1.2e+02 Score=30.53 Aligned_cols=66 Identities=9% Similarity=0.044 Sum_probs=50.0
Q ss_pred CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHH-HHHHcCCCcEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008626 49 NENEALSAFSDKPENFHVAIVEVTTSNTDGSFK-FLETAKDLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (559)
Q Consensus 49 ~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~e-LLe~IrdiPVImLSa~~d~e~v~kAi~~GA~DYLv 116 (559)
+..++++.+.+ ..-.+|++|+.--+.+.|++ +.+.+.++|||.--+-.+.+.+.++.+.|+++.++
T Consensus 144 ~~~~~~~~~~~--~~~~ii~t~i~~dGt~~G~d~l~~~~~~~pviasGGv~~~~Dl~~l~~~g~~gviv 210 (228)
T PRK04128 144 KVEDAYEMLKN--YVNRFIYTSIERDGTLTGIEEIERFWGDEEFIYAGGVSSAEDVKKLAEIGFSGVII 210 (228)
T ss_pred CHHHHHHHHHH--HhCEEEEEeccchhcccCHHHHHHhcCCCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 45566666665 32379999998776457876 33333589999988889999999999999998876
No 292
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=40.90 E-value=1e+02 Score=31.44 Aligned_cols=66 Identities=9% Similarity=0.185 Sum_probs=38.7
Q ss_pred HHHHHHHHHhhCCCEEEEEC---C--HHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEEEEecCC
Q 008626 29 AAAELKFKLEAMDYIVSTFY---N--ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSNIH 98 (559)
Q Consensus 29 ~~~~L~~~L~~~gy~V~ta~---~--~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVImLSa~~ 98 (559)
+...+++.+++.||.+..+. + .+++++.|.+ .++|=+|+-....+ .+-+..+... ++|||++-...
T Consensus 19 ii~gIe~~a~~~Gy~l~l~~t~~~~~~e~~i~~l~~--~~vDGiI~~s~~~~-~~~l~~~~~~-~iPvV~~~~~~ 89 (279)
T PF00532_consen 19 IIRGIEQEAREHGYQLLLCNTGDDEEKEEYIELLLQ--RRVDGIILASSEND-DEELRRLIKS-GIPVVLIDRYI 89 (279)
T ss_dssp HHHHHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHH--TTSSEEEEESSSCT-CHHHHHHHHT-TSEEEEESS-S
T ss_pred HHHHHHHHHHHcCCEEEEecCCCchHHHHHHHHHHh--cCCCEEEEecccCC-hHHHHHHHHc-CCCEEEEEecc
Confidence 34455666677899887443 2 2257777888 77886666532222 2233333322 79999887763
No 293
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=40.84 E-value=2.6e+02 Score=27.62 Aligned_cols=73 Identities=18% Similarity=0.246 Sum_probs=48.0
Q ss_pred HHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Q 008626 50 ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLW 128 (559)
Q Consensus 50 ~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iI 128 (559)
.++....+.. .|++|.-.. .+ ..|..+++.+. .+|||+.. ... ..+.+..|.++++..+.+. ++.+.+
T Consensus 269 ~~~~~~~~~~----ad~~l~~s~-~e-~~~~~~~Ea~~~g~PvI~~~-~~~---~~~~i~~~~~g~~~~~~~~-~~~~~i 337 (374)
T cd03817 269 REELPDYYKA----ADLFVFAST-TE-TQGLVLLEAMAAGLPVVAVD-APG---LPDLVADGENGFLFPPGDE-ALAEAL 337 (374)
T ss_pred hHHHHHHHHH----cCEEEeccc-cc-CcChHHHHHHHcCCcEEEeC-CCC---hhhheecCceeEEeCCCCH-HHHHHH
Confidence 3445555544 577665433 34 45778888775 89998643 332 3455677889999998887 777777
Q ss_pred HHHHH
Q 008626 129 QHVVH 133 (559)
Q Consensus 129 q~vlr 133 (559)
..++.
T Consensus 338 ~~l~~ 342 (374)
T cd03817 338 LRLLQ 342 (374)
T ss_pred HHHHh
Confidence 77664
No 294
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=40.82 E-value=80 Score=34.93 Aligned_cols=62 Identities=21% Similarity=0.319 Sum_probs=47.7
Q ss_pred cCCCCCcEEEEEeCCHHHHHHHH--HHHhhC------CCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCC
Q 008626 12 KDFPKGLRVLLLDQDSSAAAELK--FKLEAM------DYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSN 75 (559)
Q Consensus 12 ~~~p~glrVLIVDDD~~~~~~L~--~~L~~~------gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd 75 (559)
-++|.-..|-.||=||.+.+..+ ..|+.. +-+|+.+. ++|+.+++..++.||.||+|+--|+
T Consensus 308 lkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~--dDAf~wlr~a~~~fD~vIVDl~DP~ 377 (508)
T COG4262 308 LKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVN--DDAFQWLRTAADMFDVVIVDLPDPS 377 (508)
T ss_pred HhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEe--ccHHHHHHhhcccccEEEEeCCCCC
Confidence 35676778999999999998877 566643 12566554 5788888886678999999998887
No 295
>PLN02335 anthranilate synthase
Probab=40.73 E-value=29 Score=34.79 Aligned_cols=50 Identities=10% Similarity=0.157 Sum_probs=33.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEE
Q 008626 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIV 69 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIv 69 (559)
.+|||||.....-..|.+.|+.+|+.+..+......+..+.. ..||.||+
T Consensus 19 ~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~~~--~~~d~iVi 68 (222)
T PLN02335 19 GPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELKR--KNPRGVLI 68 (222)
T ss_pred CcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCHHHHHh--cCCCEEEE
Confidence 589999976667778999999999887765542111232333 35776666
No 296
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=40.72 E-value=81 Score=32.44 Aligned_cols=53 Identities=17% Similarity=0.292 Sum_probs=40.6
Q ss_pred HHHHHHHcC----CCcEEEEecCCC------HHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Q 008626 79 SFKFLETAK----DLPTIITSNIHC------LSTMMKCIALGAVEFLRKPLSEDKLRNLWQHV 131 (559)
Q Consensus 79 G~eLLe~Ir----diPVImLSa~~d------~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~v 131 (559)
.+++++.++ ++|+++|+-... ...+.++.++|++++++-....++....+..+
T Consensus 74 ~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~ 136 (256)
T TIGR00262 74 CFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAA 136 (256)
T ss_pred HHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHH
Confidence 466677775 579888887765 67788999999999999988888776654443
No 297
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=40.68 E-value=3e+02 Score=29.88 Aligned_cols=78 Identities=13% Similarity=0.116 Sum_probs=51.5
Q ss_pred HHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Q 008626 50 ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLW 128 (559)
Q Consensus 50 ~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iI 128 (559)
.++..+.++......|++++=- ..+ .-|+-+++.+. .+|||+.....- .+.+..|.++|++.|-+.++|...+
T Consensus 327 ~~~~~~~~~~a~~~~Dv~v~pS-~~E-~fg~~~lEAma~G~PvV~s~~gg~----~eiv~~~~~G~lv~~~d~~~la~~i 400 (439)
T TIGR02472 327 PDDVPELYRLAARSRGIFVNPA-LTE-PFGLTLLEAAACGLPIVATDDGGP----RDIIANCRNGLLVDVLDLEAIASAL 400 (439)
T ss_pred HHHHHHHHHHHhhcCCEEeccc-ccC-CcccHHHHHHHhCCCEEEeCCCCc----HHHhcCCCcEEEeCCCCHHHHHHHH
Confidence 4555555544101247766532 234 45778888875 899976544333 3445678899999999999999998
Q ss_pred HHHHH
Q 008626 129 QHVVH 133 (559)
Q Consensus 129 q~vlr 133 (559)
..++.
T Consensus 401 ~~ll~ 405 (439)
T TIGR02472 401 EDALS 405 (439)
T ss_pred HHHHh
Confidence 88764
No 298
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=40.56 E-value=72 Score=30.72 Aligned_cols=88 Identities=11% Similarity=0.113 Sum_probs=57.7
Q ss_pred HHHHHHHhhCCCEEEE--ECCHHHHHHHhhcCCCCeeEEEEecCCCCCC----CHHHHHHHcC------CCcEEEEecCC
Q 008626 31 AELKFKLEAMDYIVST--FYNENEALSAFSDKPENFHVAIVEVTTSNTD----GSFKFLETAK------DLPTIITSNIH 98 (559)
Q Consensus 31 ~~L~~~L~~~gy~V~t--a~~~~eAL~~Lre~~~~pDLVIvDv~MPd~m----dG~eLLe~Ir------diPVImLSa~~ 98 (559)
..+...|+..||.+.. +..+...++.+.. -.||.|-+|..+-..+ ....+++.+. +++|| ++.-+
T Consensus 135 ~~~~~~l~~~G~~l~ld~~g~~~~~~~~l~~--~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vi-a~gVe 211 (240)
T cd01948 135 LATLRRLRALGVRIALDDFGTGYSSLSYLKR--LPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVV-AEGVE 211 (240)
T ss_pred HHHHHHHHHCCCeEEEeCCCCcHhhHHHHHh--CCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEE-EEecC
Confidence 3355556677998774 5577777788888 6799999997653211 2234444432 55554 66777
Q ss_pred CHHHHHHHHHcCCC---E-EEeCCCCH
Q 008626 99 CLSTMMKCIALGAV---E-FLRKPLSE 121 (559)
Q Consensus 99 d~e~v~kAi~~GA~---D-YLvKPis~ 121 (559)
+.+....+...|++ + |+-+|...
T Consensus 212 ~~~~~~~~~~~gi~~~QG~~~~~p~~~ 238 (240)
T cd01948 212 TEEQLELLRELGCDYVQGYLFSRPLPA 238 (240)
T ss_pred CHHHHHHHHHcCCCeeeeceeccCCCC
Confidence 88888889999983 3 45567654
No 299
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.13 E-value=82 Score=35.39 Aligned_cols=114 Identities=15% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHhhhhhhhh-hcccCCcccccCCchhhhhhhccc-CCCCCCcCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCC
Q 008626 361 VASHLQKYRMH-RRHILPKEDDRKWPHARDQMLRNY-YPHKPIMAFPPYHSNHLVPTGPVYPVWGAPSNHLAAVQMWAPP 438 (559)
Q Consensus 361 v~shlQkyr~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 438 (559)
.+.|-|.||-+ -++...|.....-+..+...|.++ -.....-++.|+.+++. |+.|.+.++ -++|
T Consensus 367 n~p~~~~y~~r~~~~gf~rp~s~~~q~pP~~~q~~~~p~~~~~s~p~pq~qNyp-pp~p~f~m~------------~~hP 433 (483)
T KOG2236|consen 367 NQPAPQMYRGRDQNRGFKRPRSNHGQKPPQSAQNSFHPSSSDNSGPSPQQQNYP-PPSPSFPMF------------QPHP 433 (483)
T ss_pred cCCcccccCCcccccCCCCcccccCCCCCcccccccCccccCCCCCCcccCCCC-CCCCCCCcc------------CCCC
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 008626 439 GYPPWQQAESWNWKPYPGMPADAWGCPVMPLPNGPYSSFPQGASGYHNSGVDDN 492 (559)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (559)
.++.=.+.-+|+- ||.+|.... |.+-++.+| .+.|.+.++++.+....|
T Consensus 434 ~~~~p~~~~g~~~-P~~~mpp~~---P~~~~pppP-~~pp~p~~~~~q~q~~~y 482 (483)
T KOG2236|consen 434 PESNPPANFGQAN-PFNQMPPAY---PHQQSPPPP-PPPPPPNSPMNQMQNPSY 482 (483)
T ss_pred CCCCCcccccccC-ccccCCCCC---ccccCCCCC-CCCCCCCChhhcccCCCC
No 300
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=39.77 E-value=92 Score=30.37 Aligned_cols=66 Identities=14% Similarity=0.231 Sum_probs=48.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhC--CCEEEEEC------CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHc
Q 008626 16 KGLRVLLLDQDSSAAAELKFKLEAM--DYIVSTFY------NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA 86 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~--gy~V~ta~------~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~I 86 (559)
.+.+|.++...+.+.+.+.+.|++. +.++..+. ..++.++.|.+ ..+|+|++-+.+|. .. .++...
T Consensus 47 ~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~--s~~dil~VglG~Pk-QE--~~~~~~ 120 (177)
T TIGR00696 47 EKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIAR--SGAGIVFVGLGCPK-QE--IWMRNH 120 (177)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHH--cCCCEEEEEcCCcH-hH--HHHHHh
Confidence 4589999999999999999999865 56655331 22334667777 78999999999998 44 344444
No 301
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=39.64 E-value=40 Score=38.45 Aligned_cols=75 Identities=19% Similarity=0.185 Sum_probs=46.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCH---HHHHHHhhcCCCCeeEEEEecC--CCCCCC--HHHHHHHcC-C
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNE---NEALSAFSDKPENFHVAIVEVT--TSNTDG--SFKFLETAK-D 88 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~---~eAL~~Lre~~~~pDLVIvDv~--MPd~md--G~eLLe~Ir-d 88 (559)
+++|||||.....-..|.++|+.+|++|+.+.+. ...++.+.. ..||.||+-=. .|. .. -.++++.+. .
T Consensus 1 ~~~iLiIDn~dsft~nl~~~lr~~g~~v~V~~~~~~~~~~~~~l~~--~~~~~IIlSpGPg~p~-d~~~~~~i~~~~~~~ 77 (531)
T PRK09522 1 MADILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERLAT--MSNPVLMLSPGPGVPS-EAGCMPELLTRLRGK 77 (531)
T ss_pred CCeEEEEeCCChHHHHHHHHHHHCCCCEEEEECCCCCccCHHHHHh--cCcCEEEEcCCCCChh-hCCCCHHHHHHHhcC
Confidence 3589999999999999999999999887766542 222444444 34666655321 111 11 134555443 6
Q ss_pred CcEEEE
Q 008626 89 LPTIIT 94 (559)
Q Consensus 89 iPVImL 94 (559)
+||+-+
T Consensus 78 iPILGI 83 (531)
T PRK09522 78 LPIIGI 83 (531)
T ss_pred CCEEEE
Confidence 777655
No 302
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=39.57 E-value=71 Score=32.55 Aligned_cols=58 Identities=14% Similarity=0.230 Sum_probs=40.9
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhC--C-----CEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCC
Q 008626 15 PKGLRVLLLDQDSSAAAELKFKLEAM--D-----YIVSTFYNENEALSAFSDKPENFHVAIVEVTTSN 75 (559)
Q Consensus 15 p~glrVLIVDDD~~~~~~L~~~L~~~--g-----y~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd 75 (559)
+...+|-+||=|+.+.+..++.|... + .++ ...++...++...+ ..||+||+|+.-|.
T Consensus 98 ~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i-~~~Dg~~~l~~~~~--~~yDvIi~D~~dp~ 162 (246)
T PF01564_consen 98 PPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRI-IIGDGRKFLKETQE--EKYDVIIVDLTDPD 162 (246)
T ss_dssp TT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEE-EESTHHHHHHTSSS--T-EEEEEEESSSTT
T ss_pred CCcceEEEEecChHHHHHHHHhchhhccccCCCceEE-EEhhhHHHHHhccC--CcccEEEEeCCCCC
Confidence 43468999999999999999988642 2 233 66777776665444 38999999998876
No 303
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=39.47 E-value=2.9e+02 Score=28.83 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=17.3
Q ss_pred CCEEEeCCCCHHHHHHHHHHHHH
Q 008626 111 AVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 111 A~DYLvKPis~eeL~~iIq~vlr 133 (559)
+.+++.+..+.++|.+.+..++.
T Consensus 318 ~~~~~~~~~~~~~l~~~i~~ll~ 340 (380)
T PRK00025 318 VPELLQEEATPEKLARALLPLLA 340 (380)
T ss_pred chhhcCCCCCHHHHHHHHHHHhc
Confidence 34577788888888888877764
No 304
>PRK00811 spermidine synthase; Provisional
Probab=39.41 E-value=1.1e+02 Score=31.64 Aligned_cols=56 Identities=16% Similarity=0.160 Sum_probs=40.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhC--C----CEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCC
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAM--D----YIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSN 75 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~--g----y~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd 75 (559)
..+|.+||=|+.+.+..++.|... + -+|. ...++.+.+.. ....||+||+|..-|.
T Consensus 100 ~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~---~~~~yDvIi~D~~dp~ 162 (283)
T PRK00811 100 VEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE---TENSFDVIIVDSTDPV 162 (283)
T ss_pred CCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh---CCCcccEEEECCCCCC
Confidence 358999999999999999988642 1 1343 56676665544 2267999999986554
No 305
>CHL00194 ycf39 Ycf39; Provisional
Probab=39.38 E-value=3.8e+02 Score=27.59 Aligned_cols=70 Identities=10% Similarity=0.145 Sum_probs=43.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEEEE
Q 008626 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIIT 94 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVImL 94 (559)
|+|||..-.-.+-..|...|...||+|+.+....+....+.. ....++..|+.-++ .+.+.+.++-+|+-
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~--~~v~~v~~Dl~d~~-----~l~~al~g~d~Vi~ 70 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKE--WGAELVYGDLSLPE-----TLPPSFKGVTAIID 70 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhh--cCCEEEECCCCCHH-----HHHHHHCCCCEEEE
Confidence 479999988888888888888889998855432333333333 34667776764333 23344555545544
No 306
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=39.36 E-value=3.1e+02 Score=30.29 Aligned_cols=72 Identities=14% Similarity=0.202 Sum_probs=42.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCC--EEEE-------------------ECCHHHHHHHhhcCCCCeeEEEEecCCC
Q 008626 16 KGLRVLLLDQDSSAAAELKFKLEAMDY--IVST-------------------FYNENEALSAFSDKPENFHVAIVEVTTS 74 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy--~V~t-------------------a~~~~eAL~~Lre~~~~pDLVIvDv~MP 74 (559)
+.|+||||..----..+...+.+ .++ .|.+ ..+.++.++.+++ ..+|+|+++..-+
T Consensus 3 ~~~kvLviG~g~rehal~~~~~~-~~~~~~~~~~pgn~g~~~~~~~~~~~~~~~d~~~l~~~a~~--~~iD~Vv~g~E~~ 79 (426)
T PRK13789 3 VKLKVLLIGSGGRESAIAFALRK-SNLLSELKVFPGNGGFPDDELLPADSFSILDKSSVQSFLKS--NPFDLIVVGPEDP 79 (426)
T ss_pred CCcEEEEECCCHHHHHHHHHHHh-CCCCCEEEEECCchHHhccccccccCcCcCCHHHHHHHHHH--cCCCEEEECCchH
Confidence 45899999988666554444443 331 1211 2455566666777 7899999976555
Q ss_pred CCCCHH-HHHHHcCCCcEE
Q 008626 75 NTDGSF-KFLETAKDLPTI 92 (559)
Q Consensus 75 d~mdG~-eLLe~IrdiPVI 92 (559)
- ..|+ +.++.+ .+|++
T Consensus 80 l-~~glad~~~~~-Gip~~ 96 (426)
T PRK13789 80 L-VAGFADWAAEL-GIPCF 96 (426)
T ss_pred H-HHHHHHHHHHc-CCCcC
Confidence 4 4444 333332 45543
No 307
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=39.20 E-value=38 Score=33.74 Aligned_cols=52 Identities=17% Similarity=0.252 Sum_probs=33.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEE
Q 008626 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIV 69 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIv 69 (559)
|||||+|........+...|...|+.+..+......+..+.+....+|.||+
T Consensus 1 ~~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dglii 52 (214)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLL 52 (214)
T ss_pred CeEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEE
Confidence 5899999988888888999999998877554432211111110024776666
No 308
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=39.12 E-value=1.5e+02 Score=29.82 Aligned_cols=63 Identities=11% Similarity=0.201 Sum_probs=35.5
Q ss_pred HHHHHHHHhhCCCEEEEEC---CHH---HHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC--CCcEEEEec
Q 008626 30 AAELKFKLEAMDYIVSTFY---NEN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (559)
Q Consensus 30 ~~~L~~~L~~~gy~V~ta~---~~~---eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir--diPVImLSa 96 (559)
...++..+++.||.+..+. +.. +.++.+.. ..+|.+|+.-.-.+ ...+.++.+. .+|+|++..
T Consensus 45 ~~~i~~~~~~~G~~~~~~~~~~d~~~~~~~~~~l~~--~~~dgiii~~~~~~--~~~~~l~~~~~~~ipvV~~~~ 115 (295)
T PRK10653 45 KDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTV--RGTKILLINPTDSD--AVGNAVKMANQANIPVITLDR 115 (295)
T ss_pred HHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHHHH--cCCCEEEEcCCChH--HHHHHHHHHHHCCCCEEEEcc
Confidence 4445666677899987653 233 33444445 57887766431111 1123444443 789998854
No 309
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=38.95 E-value=2e+02 Score=29.84 Aligned_cols=92 Identities=14% Similarity=0.081 Sum_probs=60.5
Q ss_pred EEEEEeCCHHHHHHHHHHHh----hCC--C-EEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CCc
Q 008626 19 RVLLLDQDSSAAAELKFKLE----AMD--Y-IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLP 90 (559)
Q Consensus 19 rVLIVDDD~~~~~~L~~~L~----~~g--y-~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-diP 90 (559)
.|||.|++..+...+...+. ..+ . ..+.+.+.++|++.+.. ..|+|.+|-.-++ +--+..+.++ .+|
T Consensus 150 ~ilikdnHi~~~G~~~~av~~~r~~~~~~~~Igvev~t~eea~~A~~~---gaDyI~ld~~~~e--~lk~~v~~~~~~ip 224 (265)
T TIGR00078 150 AVMIKDNHIAAAGSIEKAVKRARAAAPFALKIEVEVESLEEAEEAAEA---GADIIMLDNMKPE--EIKEAVQLLKGRVL 224 (265)
T ss_pred ceeeeccHHHHhCCHHHHHHHHHHhCCCCCeEEEEeCCHHHHHHHHHc---CCCEEEECCCCHH--HHHHHHHHhcCCCc
Confidence 57888887655543333332 233 2 33488999999998765 5799999875444 1222334343 466
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEe
Q 008626 91 TIITSNIHCLSTMMKCIALGAVEFLR 116 (559)
Q Consensus 91 VImLSa~~d~e~v~kAi~~GA~DYLv 116 (559)
| +.++.-+.+.+.+..+.||+.+-+
T Consensus 225 i-~AsGGI~~~ni~~~a~~Gvd~Isv 249 (265)
T TIGR00078 225 L-EASGGITLDNLEEYAETGVDVISS 249 (265)
T ss_pred E-EEECCCCHHHHHHHHHcCCCEEEe
Confidence 5 456667889999999999987754
No 310
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=38.76 E-value=1.6e+02 Score=31.68 Aligned_cols=50 Identities=12% Similarity=0.192 Sum_probs=34.7
Q ss_pred cEEEEEeCCHHH----HHHHHHHHhhCCCEEEEECC---------HHHHHHHhhcCCCCeeEEEE
Q 008626 18 LRVLLLDQDSSA----AAELKFKLEAMDYIVSTFYN---------ENEALSAFSDKPENFHVAIV 69 (559)
Q Consensus 18 lrVLIVDDD~~~----~~~L~~~L~~~gy~V~ta~~---------~~eAL~~Lre~~~~pDLVIv 69 (559)
-|+|||.|.... ...+...|+..|.++..+.. .+++.+.+++ ..+|+||-
T Consensus 29 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~--~~~D~IIa 91 (377)
T cd08176 29 KKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKK--EGCDFIIS 91 (377)
T ss_pred CeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHh--cCCCEEEE
Confidence 489999876543 34577788777777666543 4566777777 67899885
No 311
>PLN02366 spermidine synthase
Probab=38.69 E-value=1.4e+02 Score=31.58 Aligned_cols=59 Identities=12% Similarity=0.059 Sum_probs=40.3
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhC--C---CEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCC
Q 008626 15 PKGLRVLLLDQDSSAAAELKFKLEAM--D---YIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSN 75 (559)
Q Consensus 15 p~glrVLIVDDD~~~~~~L~~~L~~~--g---y~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd 75 (559)
+...+|.+||=|+.+.+..++.+... + -+|. .+.++.+.++.... ..||+||+|..-|.
T Consensus 113 ~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~--~~yDvIi~D~~dp~ 177 (308)
T PLN02366 113 SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPE--GTYDAIIVDSSDPV 177 (308)
T ss_pred CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccC--CCCCEEEEcCCCCC
Confidence 43468889999998888888877542 1 2344 55666666654433 57999999987664
No 312
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=38.59 E-value=1.8e+02 Score=29.25 Aligned_cols=90 Identities=19% Similarity=0.094 Sum_probs=49.3
Q ss_pred HHHhhCCC-EEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CC---cEEEE--ecCCCHHHHHHHH
Q 008626 35 FKLEAMDY-IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DL---PTIIT--SNIHCLSTMMKCI 107 (559)
Q Consensus 35 ~~L~~~gy-~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-di---PVImL--Sa~~d~e~v~kAi 107 (559)
..|...+. -|+...+.++++..++.- ..-.+=++.+.|.. -+.++.++.++ .. |=+++ -.--+.+.+.+++
T Consensus 8 ~~l~~~~vi~vir~~~~~~a~~~~~al-~~~Gi~~iEit~~~-~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~ 85 (213)
T PRK06552 8 TKLKANGVVAVVRGESKEEALKISLAV-IKGGIKAIEVTYTN-PFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAI 85 (213)
T ss_pred HHHHHCCEEEEEECCCHHHHHHHHHHH-HHCCCCEEEEECCC-ccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHH
Confidence 34444443 344666666666655430 01123344444544 45777777764 22 21223 2335778889999
Q ss_pred HcCCCEEEeCCCCHHHHHHH
Q 008626 108 ALGAVEFLRKPLSEDKLRNL 127 (559)
Q Consensus 108 ~~GA~DYLvKPis~eeL~~i 127 (559)
++||.. ++-|.-..++.+.
T Consensus 86 ~aGA~F-ivsP~~~~~v~~~ 104 (213)
T PRK06552 86 LAGAQF-IVSPSFNRETAKI 104 (213)
T ss_pred HcCCCE-EECCCCCHHHHHH
Confidence 999984 4456666665553
No 313
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=38.49 E-value=3.5e+02 Score=29.55 Aligned_cols=65 Identities=15% Similarity=0.250 Sum_probs=44.7
Q ss_pred CHHHHHHHhhcCCCCeeEEEEecCCCCC------CCHHHHHHHcC--CCcEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008626 49 NENEALSAFSDKPENFHVAIVEVTTSNT------DGSFKFLETAK--DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (559)
Q Consensus 49 ~~~eAL~~Lre~~~~pDLVIvDv~MPd~------mdG~eLLe~Ir--diPVImLSa~~d~e~v~kAi~~GA~DYLv 116 (559)
+..+..+.+.+ ...|+|.++.+.-+. .+-.++.+.++ ++|||. ..-.+.+.+.++++.||+..++
T Consensus 142 ~~~e~a~~l~e--aGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~ipVIa-G~V~t~e~A~~l~~aGAD~V~V 214 (368)
T PRK08649 142 RAQELAPTVVE--AGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYELDVPVIV-GGCVTYTTALHLMRTGAAGVLV 214 (368)
T ss_pred CHHHHHHHHHH--CCCCEEEEeccchhhhccCCcCCHHHHHHHHHHCCCCEEE-eCCCCHHHHHHHHHcCCCEEEE
Confidence 45666677777 679999997643110 13444444444 688876 5566778889999999999866
No 314
>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]
Probab=38.47 E-value=3.9 Score=39.97 Aligned_cols=107 Identities=13% Similarity=0.102 Sum_probs=71.0
Q ss_pred EEEeCCHHHHHHHHHHHhhCCCE----EEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC------CCc
Q 008626 21 LLLDQDSSAAAELKFKLEAMDYI----VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK------DLP 90 (559)
Q Consensus 21 LIVDDD~~~~~~L~~~L~~~gy~----V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir------diP 90 (559)
+.+|++..++..+..++....+. .+.+....+....... ..+|+++.++.|++ +.++.++..+. +++
T Consensus 19 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 95 (340)
T KOG1601|consen 19 LNADDSLLDISVDARLSASNSLAFPHEPTRLSSSPESFVAATS--FSIDLSVPSLDMPG-LEGFSLFVSENNPNSLRHPP 95 (340)
T ss_pred cccccccCCcccccccccccccccccccccccchhhhhhcccc--cccccccccccccc-ccccccccccccCCCCCCCC
Confidence 77888878877777666654221 2222222221111111 46899999999999 99998887764 566
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHH
Q 008626 91 TIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQH 130 (559)
Q Consensus 91 VImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~ 130 (559)
+++++...........+..|+.+|+.+|....++...+++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 135 (340)
T KOG1601|consen 96 VPSMPSSNSSSSSSSSVSPSASLELTKPDRKNRLKRSRQH 135 (340)
T ss_pred cccccccccchhhhcccCCcccccccccccCCCcccCCcc
Confidence 7777776666667888888899999999985544444333
No 315
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=38.44 E-value=2.8e+02 Score=34.59 Aligned_cols=109 Identities=14% Similarity=0.083 Sum_probs=66.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCE-------------EEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHH
Q 008626 16 KGLRVLLLDQDSSAAAELKFKLEAMDYI-------------VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKF 82 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy~-------------V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eL 82 (559)
.+.+|+|+..-......+..+.+..+++ |+.+....+..+.+.+.-.....+-+|+. |--++
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~-----D~e~L 642 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVS-----DSESL 642 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecC-----CHHHH
Confidence 3569999999877776665555544554 66555333333444331113456777763 33445
Q ss_pred HHHcC--CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHH
Q 008626 83 LETAK--DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQH 130 (559)
Q Consensus 83 Le~Ir--diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~ 130 (559)
.+.+. |+-|+++-..-....+..|+++|..=+..| ...++.....+.
T Consensus 643 ~~~v~~~DaVIsalP~~~H~~VAkaAieaGkHvv~ek-y~~~e~~~L~e~ 691 (1042)
T PLN02819 643 LKYVSQVDVVISLLPASCHAVVAKACIELKKHLVTAS-YVSEEMSALDSK 691 (1042)
T ss_pred HHhhcCCCEEEECCCchhhHHHHHHHHHcCCCEEECc-CCHHHHHHHHHH
Confidence 55555 444444444556788999999999777777 677766654443
No 316
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=38.42 E-value=3.6e+02 Score=26.76 Aligned_cols=76 Identities=13% Similarity=0.164 Sum_probs=49.9
Q ss_pred CHHHHHHHhhcCCCCee-EEEEecCCCCC--CCHHHHHHHcC---CCcEEEEecCCCHHHHHHHHHcCCCEEEe------
Q 008626 49 NENEALSAFSDKPENFH-VAIVEVTTSNT--DGSFKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLR------ 116 (559)
Q Consensus 49 ~~~eAL~~Lre~~~~pD-LVIvDv~MPd~--mdG~eLLe~Ir---diPVImLSa~~d~e~v~kAi~~GA~DYLv------ 116 (559)
+..+..+.+.+ ..++ +++.|+...+. .-.+++++.+. ++|||+...-.+.+.+.+.+..||+.+++
T Consensus 150 ~~~~~~~~~~~--~G~~~i~~~~~~~~g~~~g~~~~~i~~i~~~~~iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa~~~ 227 (241)
T PRK13585 150 TPVEAAKRFEE--LGAGSILFTNVDVEGLLEGVNTEPVKELVDSVDIPVIASGGVTTLDDLRALKEAGAAGVVVGSALYK 227 (241)
T ss_pred CHHHHHHHHHH--cCCCEEEEEeecCCCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEEHHHhc
Confidence 45555566555 4455 56666643210 22466777764 79999988888888898999999998765
Q ss_pred CCCCHHHHHH
Q 008626 117 KPLSEDKLRN 126 (559)
Q Consensus 117 KPis~eeL~~ 126 (559)
.++..++++.
T Consensus 228 ~~~~~~~~~~ 237 (241)
T PRK13585 228 GKFTLEEAIE 237 (241)
T ss_pred CCcCHHHHHH
Confidence 3555555443
No 317
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=38.36 E-value=2.3e+02 Score=30.15 Aligned_cols=100 Identities=19% Similarity=0.239 Sum_probs=59.3
Q ss_pred cEEEEE--eCCH---HHHHHHHHHHhhCCCEEEEECCHHHHHHHh----------------hcCCCCeeEEEEecCCCCC
Q 008626 18 LRVLLL--DQDS---SAAAELKFKLEAMDYIVSTFYNENEALSAF----------------SDKPENFHVAIVEVTTSNT 76 (559)
Q Consensus 18 lrVLIV--DDD~---~~~~~L~~~L~~~gy~V~ta~~~~eAL~~L----------------re~~~~pDLVIvDv~MPd~ 76 (559)
.+|.|+ .+.+ .....|...|.+.|+++.......+.+..- ......+|+||+ + +
T Consensus 2 ~~igiv~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~---i-G- 76 (305)
T PRK02649 2 PKAGIIYNDGKPLAVRTAEELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGFDSSMKFAIV---L-G- 76 (305)
T ss_pred CEEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhcccCcCEEEE---E-e-
Confidence 356666 2333 234566777778899887654432222100 110124688877 2 3
Q ss_pred CCH--HHHHHHcC--CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008626 77 DGS--FKFLETAK--DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 136 (559)
Q Consensus 77 mdG--~eLLe~Ir--diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~ 136 (559)
+|| +..++.+. ++||+-+. .|=.+||.- ++.+++...+..+++...
T Consensus 77 GDGTlL~aar~~~~~~iPilGIN-------------~G~lGFLt~-~~~~~~~~~l~~l~~g~y 126 (305)
T PRK02649 77 GDGTVLSAARQLAPCGIPLLTIN-------------TGHLGFLTE-AYLNQLDEAIDQVLAGQY 126 (305)
T ss_pred CcHHHHHHHHHhcCCCCcEEEEe-------------CCCCccccc-CCHHHHHHHHHHHHcCCc
Confidence 577 33344433 68988664 367788874 788999999988886643
No 318
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=38.32 E-value=2.5e+02 Score=30.75 Aligned_cols=69 Identities=12% Similarity=0.067 Sum_probs=48.2
Q ss_pred eeEEEEecCCCCCCCHHHHHHHcC--CCcEEEEec-CCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 008626 64 FHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN-IHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVV 132 (559)
Q Consensus 64 pDLVIvDv~MPd~mdG~eLLe~Ir--diPVImLSa-~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vl 132 (559)
.+.+|++..-..+.---.++..+. ...||.... ..+...+...++.|+++.+++|-+..+|+.....+-
T Consensus 97 ~~~~iv~~~Dw~iIPlEnliA~~~~~~~~i~a~v~~~~eA~~~~~~LE~G~dGVll~~~d~~ei~~~~~~~~ 168 (354)
T PF01959_consen 97 ADYVIVEFRDWTIIPLENLIAALQGSSTKIIAVVADAEEARVALEVLEKGVDGVLLDPDDPAEIKALVALLK 168 (354)
T ss_pred CCeEEEEcCCCcEecHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHh
Confidence 577777776555223334566553 455555443 456677899999999999999999999998765543
No 319
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=38.20 E-value=2.4e+02 Score=31.43 Aligned_cols=99 Identities=14% Similarity=0.170 Sum_probs=61.4
Q ss_pred CCcEEEEEeC---CHHHHHHHHHHHhhC--CCEEE--EECCHHHHHHHhhcCCCCeeEEEEecCCC-----CCC-----C
Q 008626 16 KGLRVLLLDQ---DSSAAAELKFKLEAM--DYIVS--TFYNENEALSAFSDKPENFHVAIVEVTTS-----NTD-----G 78 (559)
Q Consensus 16 ~glrVLIVDD---D~~~~~~L~~~L~~~--gy~V~--ta~~~~eAL~~Lre~~~~pDLVIvDv~MP-----d~m-----d 78 (559)
.+..+++||- +........+.|++. +..|. .+.+.++|..++.. ..|.|.+-+.-. ... .
T Consensus 235 aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~a---Gad~i~vg~g~G~~~~t~~~~~~g~p 311 (450)
T TIGR01302 235 AGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDA---GADGLRVGIGPGSICTTRIVAGVGVP 311 (450)
T ss_pred hCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHh---CCCEEEECCCCCcCCccceecCCCcc
Confidence 4678888887 544433333333332 33333 67888888887765 467776543110 000 1
Q ss_pred HHHHHHHc----C--CCcEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008626 79 SFKFLETA----K--DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (559)
Q Consensus 79 G~eLLe~I----r--diPVImLSa~~d~e~v~kAi~~GA~DYLvK 117 (559)
-+.++..+ + ++|||.--.-.....+.+|+.+||+...+=
T Consensus 312 ~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~~V~~G 356 (450)
T TIGR01302 312 QITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVMLG 356 (450)
T ss_pred HHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 12333222 2 689888777888899999999999998874
No 320
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=38.18 E-value=2.5e+02 Score=30.82 Aligned_cols=98 Identities=11% Similarity=0.144 Sum_probs=56.5
Q ss_pred CcEEEEEeCCHHHH---HHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHH---HHHHcC---
Q 008626 17 GLRVLLLDQDSSAA---AELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFK---FLETAK--- 87 (559)
Q Consensus 17 glrVLIVDDD~~~~---~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~e---LLe~Ir--- 87 (559)
+.+|.+|+-|..-. ..|..+.+..|+.|..+.+..+....+... ..+|+||+|.-=-...+... +.+.+.
T Consensus 206 g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~-~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~ 284 (388)
T PRK12723 206 SLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS-KDFDLVLVDTIGKSPKDFMKLAEMKELLNACG 284 (388)
T ss_pred CCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcC
Confidence 57899999886322 234444455677777777776666655543 56999999984111023222 222222
Q ss_pred -C-CcEEEEecCCCHHHHHHHHH----cCCCEEE
Q 008626 88 -D-LPTIITSNIHCLSTMMKCIA----LGAVEFL 115 (559)
Q Consensus 88 -d-iPVImLSa~~d~e~v~kAi~----~GA~DYL 115 (559)
. -.++++++......+.+.+. .|...++
T Consensus 285 ~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I 318 (388)
T PRK12723 285 RDAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVI 318 (388)
T ss_pred CCCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEE
Confidence 2 35678888776666554443 3455543
No 321
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=38.15 E-value=2.1e+02 Score=30.08 Aligned_cols=89 Identities=8% Similarity=-0.002 Sum_probs=58.0
Q ss_pred EEEEEeCCHHHHHHHHHHHh----hCC--CEE-EEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC---C
Q 008626 19 RVLLLDQDSSAAAELKFKLE----AMD--YIV-STFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---D 88 (559)
Q Consensus 19 rVLIVDDD~~~~~~L~~~L~----~~g--y~V-~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir---d 88 (559)
.|||-|.+-.....+...+. ..+ ..+ +.|.+.+++.+.+.. .+|+|.+|- | |.+.++++. .
T Consensus 160 ~vlikdnHi~~~g~~~~~v~~aR~~~~~~~~Igvsv~tleea~~A~~~---gaDyI~lD~-~-----~~e~l~~~~~~~~ 230 (277)
T PRK08072 160 GVMIKDNHIAFCGSITKAVTSVREKLGHMVKIEVETETEEQVREAVAA---GADIIMFDN-R-----TPDEIREFVKLVP 230 (277)
T ss_pred eEEEchhHHHhhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHc---CCCEEEECC-C-----CHHHHHHHHHhcC
Confidence 58888887666655555443 234 233 488999999888754 689999973 2 233333322 3
Q ss_pred CcE-EEEecCCCHHHHHHHHHcCCCEEEe
Q 008626 89 LPT-IITSNIHCLSTMMKCIALGAVEFLR 116 (559)
Q Consensus 89 iPV-ImLSa~~d~e~v~kAi~~GA~DYLv 116 (559)
.|+ |..++.-..+.+.+..+.||+.+-+
T Consensus 231 ~~i~i~AiGGIt~~ni~~~a~~Gvd~IAv 259 (277)
T PRK08072 231 SAIVTEASGGITLENLPAYGGTGVDYISL 259 (277)
T ss_pred CCceEEEECCCCHHHHHHHHHcCCCEEEE
Confidence 233 4455667889999999999987654
No 322
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=38.07 E-value=2.7e+02 Score=29.52 Aligned_cols=52 Identities=13% Similarity=0.060 Sum_probs=30.5
Q ss_pred HHHHHHHcC-CCcEEEEecCC--CHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008626 79 SFKFLETAK-DLPTIITSNIH--CLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 79 G~eLLe~Ir-diPVImLSa~~--d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
|..++|.+. .+|+|+...-. +...+....+.|+. ++ +-+.++|...+..++.
T Consensus 292 ~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~g~g-~~--~~~~~~la~~i~~ll~ 346 (382)
T PLN02605 292 PGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDNGFG-AF--SESPKEIARIVAEWFG 346 (382)
T ss_pred cchHHHHHHcCCCEEEecCCCccchhhHHHHHhCCce-ee--cCCHHHHHHHHHHHHc
Confidence 455666664 89999876311 11122223446663 33 3688888888877764
No 323
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=38.07 E-value=3.2e+02 Score=29.20 Aligned_cols=52 Identities=12% Similarity=0.085 Sum_probs=32.8
Q ss_pred CHHHHHHHcC-CCcEEEEecCC--CHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 008626 78 GSFKFLETAK-DLPTIITSNIH--CLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVV 132 (559)
Q Consensus 78 dG~eLLe~Ir-diPVImLSa~~--d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vl 132 (559)
.|..+++.+. .+|+|++.... +.....-..+.|+. ++ +-+.++|.+.+..++
T Consensus 282 gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~G~g-~~--~~~~~~l~~~i~~ll 336 (391)
T PRK13608 282 GGITISEGLARCIPMIFLNPAPGQELENALYFEEKGFG-KI--ADTPEEAIKIVASLT 336 (391)
T ss_pred chHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhCCcE-EE--eCCHHHHHHHHHHHh
Confidence 3666667664 89999886432 23333344466664 33 348888888887776
No 324
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=37.97 E-value=96 Score=32.19 Aligned_cols=53 Identities=13% Similarity=0.124 Sum_probs=40.4
Q ss_pred HHHHHHHcC---CCcEEEEecCC------CHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Q 008626 79 SFKFLETAK---DLPTIITSNIH------CLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHV 131 (559)
Q Consensus 79 G~eLLe~Ir---diPVImLSa~~------d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~v 131 (559)
.|++++.+| ++|+|+|+-.. -...+.+|.++|++++++--+..+|....++.+
T Consensus 79 ~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~ 140 (263)
T CHL00200 79 ILSILSEVNGEIKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVC 140 (263)
T ss_pred HHHHHHHHhcCCCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHH
Confidence 466677775 68999898753 355689999999999999988888866654443
No 325
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=37.94 E-value=1.7e+02 Score=28.47 Aligned_cols=65 Identities=9% Similarity=0.098 Sum_probs=37.5
Q ss_pred HHHHHHHHhhCCCEEEEECC---HH---HHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEEEEecC
Q 008626 30 AAELKFKLEAMDYIVSTFYN---EN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSNI 97 (559)
Q Consensus 30 ~~~L~~~L~~~gy~V~ta~~---~~---eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVImLSa~ 97 (559)
...++..++..||++..+.. .+ ++++.+.. ..+|-||+...-.+ ...+..+.....+|||++...
T Consensus 18 ~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgiii~~~~~~-~~~~~~l~~~~~ipvV~i~~~ 88 (269)
T cd06275 18 VRGVEQYCYRQGYNLILCNTEGDPERQRSYLRMLAQ--KRVDGLLVMCSEYD-QPLLAMLERYRHIPMVVMDWG 88 (269)
T ss_pred HHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHH--cCCCEEEEecCCCC-hHHHHHHHhcCCCCEEEEecc
Confidence 34566667778998775432 22 45556666 67897777443222 112233322348999988654
No 326
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=37.85 E-value=1.4e+02 Score=31.93 Aligned_cols=96 Identities=14% Similarity=0.039 Sum_probs=60.1
Q ss_pred EEEEEeCCHHHHHHHHHHH-------hhCCC---EEEEECCHHHHHHHhhc---CCCCeeEEEEecC--CCCC-----CC
Q 008626 19 RVLLLDQDSSAAAELKFKL-------EAMDY---IVSTFYNENEALSAFSD---KPENFHVAIVEVT--TSNT-----DG 78 (559)
Q Consensus 19 rVLIVDDD~~~~~~L~~~L-------~~~gy---~V~ta~~~~eAL~~Lre---~~~~pDLVIvDv~--MPd~-----md 78 (559)
.|||-|.+-.....+...+ +..++ ..+.|.+.++|.+.+.. -+...|+|++|=. -|+. ..
T Consensus 172 ~vLIKdNHi~~~G~i~~av~~~r~~~~~~~~~~kIeVEv~tleea~ea~~~~~~~~agaDiImLDnm~~~~~~~~~~~e~ 251 (308)
T PLN02716 172 MVMIKDNHIAAAGGITNAVQSADKYLEEKGLSMKIEVETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVPLENGDVDVSM 251 (308)
T ss_pred eEEEcHhHHHhhCCHHHHHHHHHHhhhhcCCCeeEEEEECCHHHHHHHHHhcccccCCCCEEEeCCCcccccccCCCHHH
Confidence 3777777665543333333 22333 23488999999999981 0125799999975 1110 01
Q ss_pred HHHHHHHcCCCcEEEEecCCCHHHHHHHHHcCCCEE
Q 008626 79 SFKFLETAKDLPTIITSNIHCLSTMMKCIALGAVEF 114 (559)
Q Consensus 79 G~eLLe~IrdiPVImLSa~~d~e~v~kAi~~GA~DY 114 (559)
--+.++.++....|-.|+.-..+.+.+....|++-.
T Consensus 252 l~~av~~~~~~~~lEaSGGIt~~ni~~yA~tGVD~I 287 (308)
T PLN02716 252 LKEAVELINGRFETEASGNVTLDTVHKIGQTGVTYI 287 (308)
T ss_pred HHHHHHhhCCCceEEEECCCCHHHHHHHHHcCCCEE
Confidence 223344444445578899999999999999998743
No 327
>PRK01395 V-type ATP synthase subunit F; Provisional
Probab=37.82 E-value=1.6e+02 Score=26.40 Aligned_cols=75 Identities=17% Similarity=0.224 Sum_probs=46.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhc-CCCCeeEEEEecCCCCCCCHHHHHHHcC--CCcEE
Q 008626 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSD-KPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTI 92 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre-~~~~pDLVIvDv~MPd~mdG~eLLe~Ir--diPVI 92 (559)
++++|.||.|..++. -|+..|..+..+.+.+++.+.++. .+..+.+|++.=++-+ . --+.++.++ ..|+|
T Consensus 2 ~~~kIaVIGD~dtv~-----GFrLaGi~~~~v~~~ee~~~~i~~l~~~d~gII~Ite~~a~-~-i~~~i~~~~~~~~P~I 74 (104)
T PRK01395 2 TMYKIGVVGDKDSIL-----PFKALGIDVFPVIDEQEAINTLRKLAMEDYGIIYITEQIAA-D-IPETIERYDNQVLPAI 74 (104)
T ss_pred cceeEEEEECHHHHH-----HHHHcCCeeEEecChHHHHHHHHHHhcCCcEEEEEcHHHHH-H-hHHHHHHhcCCCCCEE
Confidence 356899999843332 344557777778777777766654 2256888888666554 1 122344443 57887
Q ss_pred EEecC
Q 008626 93 ITSNI 97 (559)
Q Consensus 93 mLSa~ 97 (559)
+.-..
T Consensus 75 l~IP~ 79 (104)
T PRK01395 75 ILIPS 79 (104)
T ss_pred EEeCC
Confidence 76553
No 328
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=37.79 E-value=61 Score=33.17 Aligned_cols=53 Identities=11% Similarity=0.098 Sum_probs=38.7
Q ss_pred CcEEEEEe------C--CHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEec
Q 008626 17 GLRVLLLD------Q--DSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEV 71 (559)
Q Consensus 17 glrVLIVD------D--D~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv 71 (559)
.++|.|+- . +......+...|++.||+|.......+.++.+.. ..+|+||.-+
T Consensus 4 ~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~~~~~~~~~--~~~D~v~~~~ 64 (304)
T PRK01372 4 FGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGEDIAAQLKE--LGFDRVFNAL 64 (304)
T ss_pred CcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecCcchHHHhcc--CCCCEEEEec
Confidence 35777775 2 2224567888888999999988766777777777 6799999754
No 329
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=37.59 E-value=3.1e+02 Score=27.74 Aligned_cols=85 Identities=5% Similarity=-0.065 Sum_probs=50.2
Q ss_pred HHHHHHHHHhhCCCEEEE-EC--CHHHHHHHhhcCCCCeeEEEEecCCCCCCCH------HHHHHHcC----CCcEEEEe
Q 008626 29 AAAELKFKLEAMDYIVST-FY--NENEALSAFSDKPENFHVAIVEVTTSNTDGS------FKFLETAK----DLPTIITS 95 (559)
Q Consensus 29 ~~~~L~~~L~~~gy~V~t-a~--~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG------~eLLe~Ir----diPVImLS 95 (559)
-...+...+++.|.++.. ++ +..+.++.+.. ....++++ -.+|+ ..+ .+.+++++ +.||++=.
T Consensus 117 ~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~--~~~~~l~m-sv~~~-~g~~~~~~~~~~i~~lr~~~~~~~i~v~g 192 (244)
T PRK13125 117 DLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSK--LSPLFIYY-GLRPA-TGVPLPVSVERNIKRVRNLVGNKYLVVGF 192 (244)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHH--hCCCEEEE-EeCCC-CCCCchHHHHHHHHHHHHhcCCCCEEEeC
Confidence 445566777777876552 22 22445554444 34466666 34444 222 23444444 46755444
Q ss_pred cCCCHHHHHHHHHcCCCEEEeC
Q 008626 96 NIHCLSTMMKCIALGAVEFLRK 117 (559)
Q Consensus 96 a~~d~e~v~kAi~~GA~DYLvK 117 (559)
+-.+.+.+..++.+||+.+++-
T Consensus 193 GI~~~e~i~~~~~~gaD~vvvG 214 (244)
T PRK13125 193 GLDSPEDARDALSAGADGVVVG 214 (244)
T ss_pred CcCCHHHHHHHHHcCCCEEEEC
Confidence 4447888988899999999986
No 330
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=37.47 E-value=1.4e+02 Score=37.46 Aligned_cols=110 Identities=15% Similarity=0.126 Sum_probs=69.4
Q ss_pred cEEEEE----eCCHHHHHHHHHHHhhCCCEEEEEC---CHHHHHHHhhcCCCCeeEEEEecCCCCCCCH-HHHHHHcC--
Q 008626 18 LRVLLL----DQDSSAAAELKFKLEAMDYIVSTFY---NENEALSAFSDKPENFHVAIVEVTTSNTDGS-FKFLETAK-- 87 (559)
Q Consensus 18 lrVLIV----DDD~~~~~~L~~~L~~~gy~V~ta~---~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG-~eLLe~Ir-- 87 (559)
-+||+. |-+..=..++.-+|+..||+|+-.. ..++.++.+++ ..+|+|-+-..|...+.. .++++.++
T Consensus 733 gkVvlaTV~GDvHDIGKnIV~~~L~~~GfeVIdLG~dVp~e~iv~aa~e--~~~diVgLS~Lmt~t~~~m~~vi~~L~~~ 810 (1178)
T TIGR02082 733 GKIVLATVKGDVHDIGKNIVGVVLSCNGYEVVDLGVMVPIEKILEAAKD--HNADVIGLSGLITPSLDEMKEVAEEMNRR 810 (1178)
T ss_pred CeEEEEecCCCccHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHH--hCCCEEEEcCcccccHHHHHHHHHHHHhc
Confidence 367776 5566666677777788899999544 67888888888 789999988877652333 34555554
Q ss_pred --CCcEEEEecCCCHHHHHH---HHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 008626 88 --DLPTIITSNIHCLSTMMK---CIALGAVEFLRKPLSEDKLRNLWQHVV 132 (559)
Q Consensus 88 --diPVImLSa~~d~e~v~k---Ai~~GA~DYLvKPis~eeL~~iIq~vl 132 (559)
+++|++=-+.-+.+.... ....||+.|-. +..+-......++
T Consensus 811 g~~v~v~vGGa~~s~~~~~~~i~~~~~gad~y~~---dA~~av~~~~~l~ 857 (1178)
T TIGR02082 811 GITIPLLIGGAATSKTHTAVKIAPIYKGPVVYVL---DASRAVTVMDTLM 857 (1178)
T ss_pred CCCceEEEeccccchhHHHhhhhhhccCCeEEec---CHHHHHHHHHHHh
Confidence 577665554444444322 12338888875 4444444444444
No 331
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=37.17 E-value=1.6e+02 Score=28.83 Aligned_cols=64 Identities=17% Similarity=0.230 Sum_probs=39.7
Q ss_pred HHHHHHHHHhhCCCEEEEECC------HHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC--CCcEEEEecC
Q 008626 29 AAAELKFKLEAMDYIVSTFYN------ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (559)
Q Consensus 29 ~~~~L~~~L~~~gy~V~ta~~------~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir--diPVImLSa~ 97 (559)
+...+...+++.||.+..+.+ ..++++.+.+ ..+|-||+--...+ .-.+++.++ .+|||++-..
T Consensus 17 ~~~~i~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgii~~~~~~~---~~~~~~~~~~~~ipvV~i~~~ 88 (269)
T cd06281 17 LFSGAEDRLRAAGYSLLIANSLNDPERELEILRSFEQ--RRMDGIIIAPGDER---DPELVDALASLDLPIVLLDRD 88 (269)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHH--cCCCEEEEecCCCC---cHHHHHHHHhCCCCEEEEecc
Confidence 445667777788999875432 2355666666 67888877433222 233444443 7999998654
No 332
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=37.11 E-value=98 Score=21.59 Aligned_cols=44 Identities=20% Similarity=0.339 Sum_probs=32.9
Q ss_pred ecCHHHHHHHHHHHHHhCCCCCCChHHHhhcCCCCCCHHHHHHhhhhh
Q 008626 321 DWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKY 368 (559)
Q Consensus 321 ~Wt~~lh~~Fv~av~~lg~~~a~pk~il~~m~v~~lt~~~v~shlQky 368 (559)
.||.+=+..|+.++.++|.. .=+.|.+.|+ +=|..+|+.|.+++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~--~w~~Ia~~~~--~rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKN--NWEKIAKELP--GRTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcC--CHHHHHhHcC--CCCHHHHHHHHHHh
Confidence 49999999999999999941 2356666663 46778888776543
No 333
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=37.02 E-value=1.5e+02 Score=30.34 Aligned_cols=66 Identities=15% Similarity=0.247 Sum_probs=47.2
Q ss_pred CHHHHHHHhhcCCCCe-eEEEEecCCCCCCCH--HHHHHHcC---CCcEEEEecCCCHHHHHHHH-HcCCCEEEe
Q 008626 49 NENEALSAFSDKPENF-HVAIVEVTTSNTDGS--FKFLETAK---DLPTIITSNIHCLSTMMKCI-ALGAVEFLR 116 (559)
Q Consensus 49 ~~~eAL~~Lre~~~~p-DLVIvDv~MPd~mdG--~eLLe~Ir---diPVImLSa~~d~e~v~kAi-~~GA~DYLv 116 (559)
+..+.++.+.+ ..+ .+++.|+.--+.+.| +++++.+. .+|||.--+-.+.+.+.+++ +.|+++.++
T Consensus 153 ~~~e~~~~~~~--~g~~~ii~~~i~~~G~~~G~d~~~i~~~~~~~~ipvIasGGv~s~eD~~~l~~~~GvdgViv 225 (258)
T PRK01033 153 DPLELAKEYEA--LGAGEILLNSIDRDGTMKGYDLELLKSFRNALKIPLIALGGAGSLDDIVEAILNLGADAAAA 225 (258)
T ss_pred CHHHHHHHHHH--cCCCEEEEEccCCCCCcCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHHCCCCEEEE
Confidence 35566666655 334 588888865442334 56666664 79999888889999999998 799998765
No 334
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=36.93 E-value=1.2e+02 Score=31.83 Aligned_cols=99 Identities=17% Similarity=0.166 Sum_probs=58.8
Q ss_pred cEEEEEe--CCHHH---HHHHHHHHhhCCCEEEEECCHHHHHHH-------hhcCCCCeeEEEEecCCCCCCCH--HHHH
Q 008626 18 LRVLLLD--QDSSA---AAELKFKLEAMDYIVSTFYNENEALSA-------FSDKPENFHVAIVEVTTSNTDGS--FKFL 83 (559)
Q Consensus 18 lrVLIVD--DD~~~---~~~L~~~L~~~gy~V~ta~~~~eAL~~-------Lre~~~~pDLVIvDv~MPd~mdG--~eLL 83 (559)
.+|+|+- +++.. ...+...|.+.|++|........++.. +.+....+|+||+ + + +|| +..+
T Consensus 6 ~~i~iv~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~---l-G-GDGT~L~aa 80 (292)
T PRK03378 6 KCIGIVGHPRHPTALTTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEIGQQADLAIV---V-G-GDGNMLGAA 80 (292)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcCCCCCEEEE---E-C-CcHHHHHHH
Confidence 4588772 33333 345666677778888865543333210 0111134788887 2 3 577 3344
Q ss_pred HHcC--CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008626 84 ETAK--DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (559)
Q Consensus 84 e~Ir--diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~ 135 (559)
+.+. ++|||-+- .|=.+||. .++.+++...++.++...
T Consensus 81 ~~~~~~~~Pilgin-------------~G~lGFl~-~~~~~~~~~~l~~i~~g~ 120 (292)
T PRK03378 81 RVLARYDIKVIGIN-------------RGNLGFLT-DLDPDNALQQLSDVLEGH 120 (292)
T ss_pred HHhcCCCCeEEEEE-------------CCCCCccc-ccCHHHHHHHHHHHHcCC
Confidence 4443 68887654 35567877 688999999988887654
No 335
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=36.86 E-value=2.7e+02 Score=28.06 Aligned_cols=64 Identities=14% Similarity=0.135 Sum_probs=45.4
Q ss_pred eeEEEEecCCCCCCCHHHHHHHcC-CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008626 64 FHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 64 pDLVIvDv~MPd~mdG~eLLe~Ir-diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
.|++|+= ...+ .-|..+++.+. .+|||+.....-. +.+..+..+|++.+.+.+++...+..++.
T Consensus 265 ad~~l~p-s~~e-~~g~~~~Eam~~g~PvI~~~~~~~~----e~~~~~~~g~~~~~~~~~~~~~~l~~l~~ 329 (365)
T cd03825 265 ADVFVVP-SLQE-NFPNTAIEALACGTPVVAFDVGGIP----DIVDHGVTGYLAKPGDPEDLAEGIEWLLA 329 (365)
T ss_pred CCEEEec-cccc-cccHHHHHHHhcCCCEEEecCCCCh----hheeCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 4777663 2334 56788888876 8998865443332 23455678999999999999999888774
No 336
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=36.83 E-value=1.6e+02 Score=28.95 Aligned_cols=62 Identities=13% Similarity=0.201 Sum_probs=38.1
Q ss_pred HHHHHHHHhhCCCEEEEECC---H---HHHHHHhhcCCCCeeEEEEecCCCCCCCH-HHHHHHcC--CCcEEEEec
Q 008626 30 AAELKFKLEAMDYIVSTFYN---E---NEALSAFSDKPENFHVAIVEVTTSNTDGS-FKFLETAK--DLPTIITSN 96 (559)
Q Consensus 30 ~~~L~~~L~~~gy~V~ta~~---~---~eAL~~Lre~~~~pDLVIvDv~MPd~mdG-~eLLe~Ir--diPVImLSa 96 (559)
...+...+++.||.++.+.. . .+.++.+.. ..+|.||+--. + .+. .++++.+. .+|||++-.
T Consensus 18 ~~~i~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~--~~~Dgiii~~~--~-~~~~~~~i~~~~~~~iPvV~~~~ 88 (282)
T cd06318 18 TEAAKAHAKALGYELISTDAQGDLTKQIADVEDLLT--RGVNVLIINPV--D-PEGLVPAVAAAKAAGVPVVVVDS 88 (282)
T ss_pred HHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHH--cCCCEEEEecC--C-ccchHHHHHHHHHCCCCEEEecC
Confidence 34456666778999885542 2 245666666 67998887432 2 222 34555553 799998854
No 337
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=36.82 E-value=1.1e+02 Score=33.69 Aligned_cols=54 Identities=17% Similarity=0.206 Sum_probs=41.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCE---EE-EECCHHHHHHHhhcCCCCeeEEEEec
Q 008626 18 LRVLLLDQDSSAAAELKFKLEAMDYI---VS-TFYNENEALSAFSDKPENFHVAIVEV 71 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~---V~-ta~~~~eAL~~Lre~~~~pDLVIvDv 71 (559)
-+|.-||-++...+..++-+...|+. +. ...+..+.+..+......||+||+|-
T Consensus 244 ~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDP 301 (396)
T PRK15128 244 SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDP 301 (396)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEECC
Confidence 48999999999999999999877762 33 56777777766543225799999984
No 338
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=36.77 E-value=1.1e+02 Score=26.12 Aligned_cols=55 Identities=16% Similarity=0.159 Sum_probs=40.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCC--EEE-EECCHHHHHHHhhcCCCCeeEEEEecCCC
Q 008626 18 LRVLLLDQDSSAAAELKFKLEAMDY--IVS-TFYNENEALSAFSDKPENFHVAIVEVTTS 74 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy--~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MP 74 (559)
.+|..+|=|+...+..+..+...+. .+. .+.+..+..+.+.. ..+|+||+|.-..
T Consensus 24 ~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~--~~~D~Iv~npP~~ 81 (117)
T PF13659_consen 24 ARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPD--GKFDLIVTNPPYG 81 (117)
T ss_dssp CEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTT--T-EEEEEE--STT
T ss_pred CeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccC--ceeEEEEECCCCc
Confidence 6899999999999999999988754 233 56677766655666 7899999987544
No 339
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=36.76 E-value=3.2e+02 Score=29.61 Aligned_cols=106 Identities=10% Similarity=0.036 Sum_probs=61.7
Q ss_pred cEEEEEeCC-HHHHHHHHHHHhhCCCEE--EEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CCcEEE
Q 008626 18 LRVLLLDQD-SSAAAELKFKLEAMDYIV--STFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTII 93 (559)
Q Consensus 18 lrVLIVDDD-~~~~~~L~~~L~~~gy~V--~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-diPVIm 93 (559)
.+++|+.+- ....+.+..+.....-.+ ..-.+.+.+-.++.. .|++|+=- .-+ .-|+..++.+. .+|+|+
T Consensus 326 ~~lvi~G~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----aDv~l~pS-~~E-~~gl~~lEAma~G~pvI~ 399 (476)
T cd03791 326 GQLVILGSGDPEYEEALRELAARYPGRVAVLIGYDEALAHLIYAG----ADFFLMPS-RFE-PCGLTQMYAMRYGTVPIV 399 (476)
T ss_pred cEEEEEecCCHHHHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHh----CCEEECCC-CCC-CCcHHHHHHhhCCCCCEE
Confidence 566766653 344455555555432222 222333333333333 57777632 234 45777777776 788875
Q ss_pred EecCCCHHHHHHHHHcCC------CEEEeCCCCHHHHHHHHHHHHH
Q 008626 94 TSNIHCLSTMMKCIALGA------VEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 94 LSa~~d~e~v~kAi~~GA------~DYLvKPis~eeL~~iIq~vlr 133 (559)
....+-.+. +..|. ++|+..|.+.++|.+++..++.
T Consensus 400 ~~~gg~~e~----v~~~~~~~~~~~G~~~~~~~~~~l~~~i~~~l~ 441 (476)
T cd03791 400 RATGGLADT----VIDYNEDTGEGTGFVFEGYNADALLAALRRALA 441 (476)
T ss_pred CcCCCccce----EeCCcCCCCCCCeEEeCCCCHHHHHHHHHHHHH
Confidence 433333222 33444 8999999999999999988764
No 340
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=36.64 E-value=1.4e+02 Score=28.65 Aligned_cols=79 Identities=10% Similarity=0.066 Sum_probs=45.4
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC-CH---HHHHHHhhcCCCCeeEEEEecCCCCCCCH-HHHHHHc---
Q 008626 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFY-NE---NEALSAFSDKPENFHVAIVEVTTSNTDGS-FKFLETA--- 86 (559)
Q Consensus 15 p~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~-~~---~eAL~~Lre~~~~pDLVIvDv~MPd~mdG-~eLLe~I--- 86 (559)
+++.+|||.....-+-..|...|.+.||.|+.+. +. .++...+......+.++.+|+ .+ .+. .++++.+
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl--~~-~~~~~~~~~~~~~~ 80 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDV--RD-RAALKAAVAAGVED 80 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCC--CC-HHHHHHHHHHHHHH
Confidence 3456899999888888888888888899988544 43 233334444212244444454 44 223 3344433
Q ss_pred -CCCcEEEEec
Q 008626 87 -KDLPTIITSN 96 (559)
Q Consensus 87 -rdiPVImLSa 96 (559)
..+-+|+..+
T Consensus 81 ~~~~d~vi~~a 91 (251)
T PRK12826 81 FGRLDILVANA 91 (251)
T ss_pred hCCCCEEEECC
Confidence 2455555544
No 341
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=36.58 E-value=85 Score=30.69 Aligned_cols=44 Identities=14% Similarity=0.263 Sum_probs=34.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEE
Q 008626 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIV 69 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIv 69 (559)
|+|+|||--.-....+...|++.|+++..+.+.++. . .+|.||+
T Consensus 1 m~i~iid~g~gn~~s~~~~l~~~g~~~~~v~~~~~~----~----~~d~iIl 44 (196)
T PRK13170 1 MNVVIIDTGCANLSSVKFAIERLGYEPVVSRDPDVI----L----AADKLFL 44 (196)
T ss_pred CeEEEEeCCCchHHHHHHHHHHCCCeEEEECCHHHh----C----CCCEEEE
Confidence 579999977777778888999999999988877542 2 3677765
No 342
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=36.56 E-value=1.2e+02 Score=29.28 Aligned_cols=87 Identities=10% Similarity=0.135 Sum_probs=57.0
Q ss_pred HHHHHHhhCCCEEEE--ECCHHHHHHHhhcCCCCeeEEEEecCCCCC----CCHHHHHHHcC------CCcEEEEecCCC
Q 008626 32 ELKFKLEAMDYIVST--FYNENEALSAFSDKPENFHVAIVEVTTSNT----DGSFKFLETAK------DLPTIITSNIHC 99 (559)
Q Consensus 32 ~L~~~L~~~gy~V~t--a~~~~eAL~~Lre~~~~pDLVIvDv~MPd~----mdG~eLLe~Ir------diPVImLSa~~d 99 (559)
.....|+..||.+.. +..+..-+..+.. -.+|.|-+|..+-.. .....+++.+. .+.|| .++-++
T Consensus 137 ~~i~~l~~~G~~ialddfg~~~~~~~~l~~--l~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vi-a~gVe~ 213 (241)
T smart00052 137 ATLQRLRELGVRIALDDFGTGYSSLSYLKR--LPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVV-AEGVET 213 (241)
T ss_pred HHHHHHHHCCCEEEEeCCCCcHHHHHHHHh--CCCCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCeEE-EecCCC
Confidence 445666778988774 5566777788887 679999999754320 11233444432 45554 566677
Q ss_pred HHHHHHHHHcCCC---E-EEeCCCCH
Q 008626 100 LSTMMKCIALGAV---E-FLRKPLSE 121 (559)
Q Consensus 100 ~e~v~kAi~~GA~---D-YLvKPis~ 121 (559)
.+....+...|++ + |+-||...
T Consensus 214 ~~~~~~l~~~Gi~~~QG~~~~~p~~~ 239 (241)
T smart00052 214 PEQLDLLRSLGCDYGQGYLFSRPLPL 239 (241)
T ss_pred HHHHHHHHHcCCCEEeeceeccCCCC
Confidence 7888888999985 3 45667654
No 343
>PLN02727 NAD kinase
Probab=36.55 E-value=1.3e+02 Score=36.76 Aligned_cols=100 Identities=17% Similarity=0.143 Sum_probs=60.5
Q ss_pred cEEEEEeCCH-HHH---HHHHHHHhhC-CCEEEEECCHHHHHHHhh--------------cCCCCeeEEEEecCCCCCCC
Q 008626 18 LRVLLLDQDS-SAA---AELKFKLEAM-DYIVSTFYNENEALSAFS--------------DKPENFHVAIVEVTTSNTDG 78 (559)
Q Consensus 18 lrVLIVDDD~-~~~---~~L~~~L~~~-gy~V~ta~~~~eAL~~Lr--------------e~~~~pDLVIvDv~MPd~md 78 (559)
-+|+||.... ... ..|...|... |++|..-....+.+..+. +....+|+||+ + + +|
T Consensus 679 rtVgIV~K~~~ea~~~~~eL~~~L~~~~gi~V~VE~~~a~~l~~~~~~~~~~~~~~~~~~el~~~~DLVIv---L-G-GD 753 (986)
T PLN02727 679 KTVLLLKKLGQELMEEAKEVASFLYHQEKMNVLVEPDVHDIFARIPGFGFVQTFYSQDTSDLHERVDFVAC---L-G-GD 753 (986)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHHHHhCCCeEEEEecchHHHhhccccccccceecccchhhcccCCCEEEE---E-C-Cc
Confidence 4788885321 222 3356666665 888886666555442111 11124688777 2 3 46
Q ss_pred HH--HHHHHcC--CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Q 008626 79 SF--KFLETAK--DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAF 136 (559)
Q Consensus 79 G~--eLLe~Ir--diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~ 136 (559)
|. ..++.+. .+|||-+ ..|=-+||. .++.+++...|..++.+..
T Consensus 754 GTlLrAar~~~~~~iPILGI-------------NlGrLGFLT-di~~ee~~~~L~~Il~G~y 801 (986)
T PLN02727 754 GVILHASNLFRGAVPPVVSF-------------NLGSLGFLT-SHYFEDFRQDLRQVIHGNN 801 (986)
T ss_pred HHHHHHHHHhcCCCCCEEEE-------------eCCCccccc-cCCHHHHHHHHHHHHcCCc
Confidence 73 3334443 6898755 457778887 5899999999998886543
No 344
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=36.50 E-value=80 Score=31.25 Aligned_cols=45 Identities=13% Similarity=0.066 Sum_probs=35.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCC--EEEEECCHHHHHHHhhcCCCCeeEEEE
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAMDY--IVSTFYNENEALSAFSDKPENFHVAIV 69 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy--~V~ta~~~~eAL~~Lre~~~~pDLVIv 69 (559)
+|+|.|||--.-....+.+.|++.|+ ++....+.+++ ..+|.||+
T Consensus 1 ~~~~~iid~g~gn~~s~~~al~~~g~~~~v~~~~~~~~l--------~~~d~lIl 47 (209)
T PRK13146 1 MMTVAIIDYGSGNLRSAAKALERAGAGADVVVTADPDAV--------AAADRVVL 47 (209)
T ss_pred CCeEEEEECCCChHHHHHHHHHHcCCCccEEEECCHHHh--------cCCCEEEE
Confidence 36999999887778899999999998 77777776653 34788887
No 345
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=36.48 E-value=4.6e+02 Score=28.28 Aligned_cols=128 Identities=11% Similarity=0.101 Sum_probs=70.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhC--CCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEEE
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAM--DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTII 93 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~--gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVIm 93 (559)
.+||.||.- -. .......+... +++++ .|+...+..+.+.+ .+.+- -..+--++++. -++-+|.
T Consensus 3 ~~rVgViG~-~~-G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~---~~gi~-------~y~~~eell~d-~Di~~V~ 69 (343)
T TIGR01761 3 VQSVVVCGT-RF-GQFYLAAFAAAPERFELAGILAQGSERSRALAH---RLGVP-------LYCEVEELPDD-IDIACVV 69 (343)
T ss_pred CcEEEEEeH-HH-HHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHH---HhCCC-------ccCCHHHHhcC-CCEEEEE
Confidence 479999998 43 44444445443 57777 45544443343333 13321 10223334421 1555665
Q ss_pred Eec----CCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHHhcCCCCccCCCcHHHHHHHHHHhhh
Q 008626 94 TSN----IHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKAFNAGGSALSDSLKPVKESVVSMLHLK 161 (559)
Q Consensus 94 LSa----~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~~~~~~~~~s~~Lt~re~eVl~li~~~ 161 (559)
+.. ..-.+.+.+|+++|..=++-||+..+|....++.+-++... .....+.+.-..+.+++..+
T Consensus 70 ipt~~P~~~H~e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~----l~v~~f~p~~~~vr~~i~~~ 137 (343)
T TIGR01761 70 VRSAIVGGQGSALARALLARGIHVLQEHPLHPRDIQDLLRLAERQGRR----YLVNTFYPHLPAVRRFIEYA 137 (343)
T ss_pred eCCCCCCccHHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCE----EEEEecCHHHHHHHHHHHcc
Confidence 522 34578899999999999999999977776665554433211 11233445555555555443
No 346
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=36.41 E-value=2e+02 Score=30.57 Aligned_cols=55 Identities=13% Similarity=0.183 Sum_probs=38.8
Q ss_pred CHHHHHHHcC---CCcEE--EEecCCCHHHHHHHHHcCCCEEEeC-----CCCHHHHHHHHHHHH
Q 008626 78 GSFKFLETAK---DLPTI--ITSNIHCLSTMMKCIALGAVEFLRK-----PLSEDKLRNLWQHVV 132 (559)
Q Consensus 78 dG~eLLe~Ir---diPVI--mLSa~~d~e~v~kAi~~GA~DYLvK-----Pis~eeL~~iIq~vl 132 (559)
-++++++.+. .+||| ....-...+.+..++++||+.+++= .-++.+....+...+
T Consensus 190 ~~~elL~ei~~~~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~akafv~ai 254 (293)
T PRK04180 190 APYELVKEVAELGRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRARAIVEAT 254 (293)
T ss_pred CCHHHHHHHHHhCCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHHHHH
Confidence 3677777774 69998 6666668999999999999998753 334554444444444
No 347
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=36.26 E-value=1.9e+02 Score=27.91 Aligned_cols=64 Identities=14% Similarity=0.108 Sum_probs=35.1
Q ss_pred HHHHHHHHHhhCCCEEEEECC--H---HH-HHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEEEEec
Q 008626 29 AAAELKFKLEAMDYIVSTFYN--E---NE-ALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSN 96 (559)
Q Consensus 29 ~~~~L~~~L~~~gy~V~ta~~--~---~e-AL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVImLSa 96 (559)
+...++..+.+.||.+..+.. . .+ +.+++.+ ..+|-||+...... ...++.+.. ..+|+|++-.
T Consensus 21 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~vdgiii~~~~~~-~~~~~~~~~-~~ipvV~~~~ 90 (268)
T cd06271 21 FLSGLSEALAEHGYDLVLLPVDPDEDPLEVYRRLVES--GLVDGVIISRTRPD-DPRVALLLE-RGFPFVTHGR 90 (268)
T ss_pred HHHHHHHHHHHCCceEEEecCCCcHHHHHHHHHHHHc--CCCCEEEEecCCCC-ChHHHHHHh-cCCCEEEECC
Confidence 345667777888998775432 1 12 3334444 56887777543222 222222221 3789998843
No 348
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=36.09 E-value=3.5e+02 Score=28.03 Aligned_cols=55 Identities=20% Similarity=0.235 Sum_probs=33.4
Q ss_pred CCcEEEEEeCCHH---HHHHHHHHHhhCCCEEEEEC---CH-H---HHHHHhhcCCCCeeEEEEecC
Q 008626 16 KGLRVLLLDQDSS---AAAELKFKLEAMDYIVSTFY---NE-N---EALSAFSDKPENFHVAIVEVT 72 (559)
Q Consensus 16 ~glrVLIVDDD~~---~~~~L~~~L~~~gy~V~ta~---~~-~---eAL~~Lre~~~~pDLVIvDv~ 72 (559)
.+.+|+|||-|.. -.+.+..+.+..+..+.... +. . +++..+.. ..+|+||+|.-
T Consensus 99 ~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~~--~~~D~ViIDT~ 163 (272)
T TIGR00064 99 QGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKA--RNIDVVLIDTA 163 (272)
T ss_pred cCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHHH--CCCCEEEEeCC
Confidence 3579999998853 22445555666676655332 22 2 33444444 56999999984
No 349
>PLN02949 transferase, transferring glycosyl groups
Probab=36.05 E-value=2e+02 Score=32.09 Aligned_cols=109 Identities=7% Similarity=0.008 Sum_probs=66.5
Q ss_pred CcEEEEEeCC-----HHHHHHHHHHHhhCCC--EEEEEC--CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC
Q 008626 17 GLRVLLLDQD-----SSAAAELKFKLEAMDY--IVSTFY--NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK 87 (559)
Q Consensus 17 glrVLIVDDD-----~~~~~~L~~~L~~~gy--~V~ta~--~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir 87 (559)
.++++|+.+- ....+.|+++....|. .|.... +.++-.++++. .|+++. ....+ .-|+-++|.+.
T Consensus 303 ~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L~~~V~f~g~v~~~el~~ll~~----a~~~v~-~s~~E-~FGivvlEAMA 376 (463)
T PLN02949 303 RPKLQFVGSCRNKEDEERLQKLKDRAKELGLDGDVEFHKNVSYRDLVRLLGG----AVAGLH-SMIDE-HFGISVVEYMA 376 (463)
T ss_pred CcEEEEEeCCCCcccHHHHHHHHHHHHHcCCCCcEEEeCCCCHHHHHHHHHh----CcEEEe-CCccC-CCChHHHHHHH
Confidence 4688888763 3344667777776653 254333 34555566655 366553 33445 66888888875
Q ss_pred -CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008626 88 -DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 88 -diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
.+|+|.....+....+..-...|..+|+.. +.++|.+.+.+++.
T Consensus 377 ~G~PVIa~~~gGp~~eIV~~~~~g~tG~l~~--~~~~la~ai~~ll~ 421 (463)
T PLN02949 377 AGAVPIAHNSAGPKMDIVLDEDGQQTGFLAT--TVEEYADAILEVLR 421 (463)
T ss_pred cCCcEEEeCCCCCcceeeecCCCCcccccCC--CHHHHHHHHHHHHh
Confidence 788887654332222211112366788874 88999998888774
No 350
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=35.96 E-value=1.6e+02 Score=31.89 Aligned_cols=50 Identities=10% Similarity=0.042 Sum_probs=35.4
Q ss_pred cEEEEEeCCHH----HHHHHHHHHhhCCCEEEEEC---------CHHHHHHHhhcCCCCeeEEEE
Q 008626 18 LRVLLLDQDSS----AAAELKFKLEAMDYIVSTFY---------NENEALSAFSDKPENFHVAIV 69 (559)
Q Consensus 18 lrVLIVDDD~~----~~~~L~~~L~~~gy~V~ta~---------~~~eAL~~Lre~~~~pDLVIv 69 (559)
-+||||-|... ....+...|+..|+++..+. +.+++++.+++ ..+|+||.
T Consensus 22 ~k~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~--~~~D~IIa 84 (398)
T cd08178 22 KRAFIVTDRFMVKLGYVDKVIDVLKRRGVETEVFSDVEPDPSLETVRKGLELMNS--FKPDTIIA 84 (398)
T ss_pred CeEEEEcChhHHhCccHHHHHHHHHHCCCeEEEecCCCCCcCHHHHHHHHHHHHh--cCCCEEEE
Confidence 58999987543 33456777877787776553 45677778887 77999885
No 351
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=35.79 E-value=3.5e+02 Score=30.52 Aligned_cols=104 Identities=11% Similarity=0.021 Sum_probs=60.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCC--EEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CCcEEE
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAMDY--IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTII 93 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy--~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-diPVIm 93 (559)
.+++.|+.+.+. ...|+++++..+. .|..... .+.-+.+.. .|++++=- ..+ .-|+-+++.+. .+|||.
T Consensus 350 ~~~l~i~G~G~~-~~~l~~~i~~~~l~~~V~f~G~-~~~~~~~~~----adv~v~pS-~~E-gfgl~~lEAma~G~PVI~ 421 (500)
T TIGR02918 350 ELTFDIYGEGGE-KQKLQKIINENQAQDYIHLKGH-RNLSEVYKD----YELYLSAS-TSE-GFGLTLMEAVGSGLGMIG 421 (500)
T ss_pred CeEEEEEECchh-HHHHHHHHHHcCCCCeEEEcCC-CCHHHHHHh----CCEEEEcC-ccc-cccHHHHHHHHhCCCEEE
Confidence 356677776654 3556666665443 2333222 232233333 57766533 344 45777888876 899987
Q ss_pred EecC-CCHHHHHHHHHcCCCEEEeCC----CC----HHHHHHHHHHHH
Q 008626 94 TSNI-HCLSTMMKCIALGAVEFLRKP----LS----EDKLRNLWQHVV 132 (559)
Q Consensus 94 LSa~-~d~e~v~kAi~~GA~DYLvKP----is----~eeL~~iIq~vl 132 (559)
.-.. +.. +.+..|-++||+.+ -+ .++|.+.|..++
T Consensus 422 ~dv~~G~~----eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll 465 (500)
T TIGR02918 422 FDVNYGNP----TFIEDNKNGYLIPIDEEEDDEDQIITALAEKIVEYF 465 (500)
T ss_pred ecCCCCCH----HHccCCCCEEEEeCCccccchhHHHHHHHHHHHHHh
Confidence 5433 333 34678999999973 23 566666666655
No 352
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=35.78 E-value=3.7e+02 Score=27.80 Aligned_cols=34 Identities=18% Similarity=0.332 Sum_probs=27.8
Q ss_pred HHHHHcC---CCcEEEEecCCCHHHHHHHHHcCCCEE
Q 008626 81 KFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEF 114 (559)
Q Consensus 81 eLLe~Ir---diPVImLSa~~d~e~v~kAi~~GA~DY 114 (559)
+++..++ ++|||..-.-.+.+.+.+++..||+..
T Consensus 224 ~~v~~i~~~~~ipvi~~GGI~s~~da~~~l~~GAd~V 260 (300)
T TIGR01037 224 RMVYDVYKMVDIPIIGVGGITSFEDALEFLMAGASAV 260 (300)
T ss_pred HHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCce
Confidence 4555554 699999988899999999999998764
No 353
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=35.68 E-value=1.3e+02 Score=29.48 Aligned_cols=68 Identities=10% Similarity=0.153 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhhCCCEEEEEC---CH---HHHHHHhhcCCCCeeEEEEecCCCCCCCH-HHHHHHc--CCCcEEEEecC
Q 008626 28 SAAAELKFKLEAMDYIVSTFY---NE---NEALSAFSDKPENFHVAIVEVTTSNTDGS-FKFLETA--KDLPTIITSNI 97 (559)
Q Consensus 28 ~~~~~L~~~L~~~gy~V~ta~---~~---~eAL~~Lre~~~~pDLVIvDv~MPd~mdG-~eLLe~I--rdiPVImLSa~ 97 (559)
.+...++..+++.||.+..+. +. .+.++.+.. ..+|-||+.-..++.... ...++.+ .++|||++-..
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgiIi~~~~~~~~~~~~~~i~~~~~~~ipvV~i~~~ 92 (273)
T cd06292 16 AFAEAIEAALAQYGYTVLLCNTYRGGVSEADYVEDLLA--RGVRGVVFISSLHADTHADHSHYERLAERGLPVVLVNGR 92 (273)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHH--cCCCEEEEeCCCCCcccchhHHHHHHHhCCCCEEEEcCC
Confidence 344567777778899987543 22 255666777 679987775433330211 2334444 37999988543
No 354
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=35.54 E-value=3.1e+02 Score=27.86 Aligned_cols=52 Identities=15% Similarity=0.114 Sum_probs=35.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEec
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEV 71 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv 71 (559)
+.+|..||-++...+..+.-+...+.++.. .+..+.+..... ..||+||+|-
T Consensus 110 ~~~v~~vDis~~al~~A~~N~~~~~~~~~~-~D~~~~l~~~~~--~~fDlVv~NP 161 (251)
T TIGR03704 110 GIELHAADIDPAAVRCARRNLADAGGTVHE-GDLYDALPTALR--GRVDILAANA 161 (251)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCEEEE-eechhhcchhcC--CCEeEEEECC
Confidence 358999999999998888888777665543 344443322122 4699999984
No 355
>PRK01362 putative translaldolase; Provisional
Probab=35.50 E-value=2.1e+02 Score=28.84 Aligned_cols=79 Identities=15% Similarity=0.098 Sum_probs=50.0
Q ss_pred HHHHhhCCCE--EEEECCHHHHHHHhhcCCCCeeEEEEec---CCCCCCCHHHHHHHcC------C-CcEEEEecCCCHH
Q 008626 34 KFKLEAMDYI--VSTFYNENEALSAFSDKPENFHVAIVEV---TTSNTDGSFKFLETAK------D-LPTIITSNIHCLS 101 (559)
Q Consensus 34 ~~~L~~~gy~--V~ta~~~~eAL~~Lre~~~~pDLVIvDv---~MPd~mdG~eLLe~Ir------d-iPVImLSa~~d~e 101 (559)
.+.|...|+. ++.+.+..+|+...... .++|-.=+ .-.+ .+|+++++.+. . -.-|+..+--+..
T Consensus 94 ~~~L~~~Gi~v~~T~vfs~~Qa~~Aa~aG---a~yispyvgRi~d~g-~dg~~~i~~~~~~~~~~~~~tkilaAS~r~~~ 169 (214)
T PRK01362 94 VKALSKEGIKTNVTLIFSANQALLAAKAG---ATYVSPFVGRLDDIG-TDGMELIEDIREIYDNYGFDTEIIAASVRHPM 169 (214)
T ss_pred HHHHHHCCCceEEeeecCHHHHHHHHhcC---CcEEEeecchHhhcC-CCHHHHHHHHHHHHHHcCCCcEEEEeecCCHH
Confidence 3445566664 44677888888777662 33332222 1123 68998888763 2 3455566677888
Q ss_pred HHHHHHHcCCCEEEe
Q 008626 102 TMMKCIALGAVEFLR 116 (559)
Q Consensus 102 ~v~kAi~~GA~DYLv 116 (559)
.+.++..+|++-+-+
T Consensus 170 ~v~~~~~~G~d~iTi 184 (214)
T PRK01362 170 HVLEAALAGADIATI 184 (214)
T ss_pred HHHHHHHcCCCEEec
Confidence 899999999994433
No 356
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=35.43 E-value=6.2e+02 Score=27.65 Aligned_cols=111 Identities=17% Similarity=0.191 Sum_probs=63.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCE-E-EEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHH----HHHcCCCcE
Q 008626 18 LRVLLLDQDSSAAAELKFKLEAMDYI-V-STFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKF----LETAKDLPT 91 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~-V-~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eL----Le~IrdiPV 91 (559)
-+|+.+|-++...+.++.-++..+.. + +...+....+... ...||+|++|- .+ . ...+ ++.+++--+
T Consensus 70 ~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~---~~~fDvIdlDP--fG-s-~~~fld~al~~~~~~gl 142 (374)
T TIGR00308 70 REVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYR---NRKFHVIDIDP--FG-T-PAPFVDSAIQASAERGL 142 (374)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHh---CCCCCEEEeCC--CC-C-cHHHHHHHHHhcccCCE
Confidence 47999999999999999988766542 3 3444555555433 24699999987 33 2 2233 344455678
Q ss_pred EEEecCCCHHH----HHHHH-HcCCCEEEeCCCC-HHHHHHHHHHHHHHHH
Q 008626 92 IITSNIHCLST----MMKCI-ALGAVEFLRKPLS-EDKLRNLWQHVVHKAF 136 (559)
Q Consensus 92 ImLSa~~d~e~----v~kAi-~~GA~DYLvKPis-~eeL~~iIq~vlrr~~ 136 (559)
|.+|+.+.... ...++ +.||.-. .-++. .--|+-.+..+.+.+.
T Consensus 143 L~vTaTD~~~L~G~~~~~~~rkYga~~~-~~~~~~E~glRiLlg~i~r~Aa 192 (374)
T TIGR00308 143 LLVTATDTSALCGNYPKSCLRKYGANPV-KTESCHESALRLLLGFVKRTAA 192 (374)
T ss_pred EEEEecccHHhcCCChHHHHHHhCCccc-CCcchHHHHHHHHHHHHHHHHH
Confidence 88887654442 33444 3455432 11222 2334444445444433
No 357
>PRK05993 short chain dehydrogenase; Provisional
Probab=35.28 E-value=1.1e+02 Score=30.66 Aligned_cols=55 Identities=15% Similarity=0.141 Sum_probs=41.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCC
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTT 73 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~M 73 (559)
+.+|||..-..-+-..+...|.+.|+.|+.+....+.++.+.. ...+++.+|+.-
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~--~~~~~~~~Dl~d 58 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEA--EGLEAFQLDYAE 58 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH--CCceEEEccCCC
Confidence 4578999988888888988898889999866655555666666 456777777753
No 358
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=35.27 E-value=3.3e+02 Score=26.42 Aligned_cols=80 Identities=13% Similarity=0.132 Sum_probs=44.0
Q ss_pred HHHHhhCCCEEE-EE--CCHHHHHHHhhcCCCCeeEEEEecCCCCCCCH-------HHHHHHcCC------C-cEEEEec
Q 008626 34 KFKLEAMDYIVS-TF--YNENEALSAFSDKPENFHVAIVEVTTSNTDGS-------FKFLETAKD------L-PTIITSN 96 (559)
Q Consensus 34 ~~~L~~~gy~V~-ta--~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG-------~eLLe~Ird------i-PVImLSa 96 (559)
.+.++..|+.+. .+ .+..+.++.+.. ..|.|+++..-++ .+| ++.++.++. + ++|++.+
T Consensus 102 ~~~~~~~~~~~g~~~~~~t~~e~~~~~~~---~~d~i~~~~~~~g-~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~G 177 (220)
T PRK05581 102 LQLIKSAGIKAGLVLNPATPLEPLEDVLD---LLDLVLLMSVNPG-FGGQKFIPEVLEKIRELRKLIDERGLDILIEVDG 177 (220)
T ss_pred HHHHHHcCCEEEEEECCCCCHHHHHHHHh---hCCEEEEEEECCC-CCcccccHHHHHHHHHHHHHHHhcCCCceEEEEC
Confidence 333444455543 33 234555554433 3576666654344 333 334444431 2 4566666
Q ss_pred CCCHHHHHHHHHcCCCEEEeC
Q 008626 97 IHCLSTMMKCIALGAVEFLRK 117 (559)
Q Consensus 97 ~~d~e~v~kAi~~GA~DYLvK 117 (559)
--+.+.+.++++.||+.+++-
T Consensus 178 GI~~~nv~~l~~~GaD~vvvg 198 (220)
T PRK05581 178 GINADNIKECAEAGADVFVAG 198 (220)
T ss_pred CCCHHHHHHHHHcCCCEEEEC
Confidence 667788888889999977654
No 359
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=35.22 E-value=3.2e+02 Score=28.38 Aligned_cols=84 Identities=20% Similarity=0.188 Sum_probs=49.9
Q ss_pred HHHHHHHhhCCCEEEE----ECCHHH---HHHHhhcCCCCeeEEEEe-c----C-----CCCCCCHHHHHHHcCCCcEEE
Q 008626 31 AELKFKLEAMDYIVST----FYNENE---ALSAFSDKPENFHVAIVE-V----T-----TSNTDGSFKFLETAKDLPTII 93 (559)
Q Consensus 31 ~~L~~~L~~~gy~V~t----a~~~~e---AL~~Lre~~~~pDLVIvD-v----~-----MPd~mdG~eLLe~IrdiPVIm 93 (559)
..|...+.+.|.-|.. +.+.+| |++.+.+. ...+|+|+. - . ..+ +..+..++...++|||+
T Consensus 112 ~~LL~~va~tgkPVilk~G~~~t~~e~~~A~e~i~~~-Gn~~i~L~eRg~~~Y~~~~~n~~d-l~ai~~lk~~~~lPViv 189 (250)
T PRK13397 112 FEFLKTLSHIDKPILFKRGLMATIEEYLGALSYLQDT-GKSNIILCERGVRGYDVETRNMLD-IMAVPIIQQKTDLPIIV 189 (250)
T ss_pred HHHHHHHHccCCeEEEeCCCCCCHHHHHHHHHHHHHc-CCCeEEEEccccCCCCCccccccC-HHHHHHHHHHhCCCeEE
Confidence 3344444455655442 334444 55555543 456899997 1 1 223 34566666655899998
Q ss_pred -EecCCCH-----HHHHHHHHcCCCEEEe
Q 008626 94 -TSNIHCL-----STMMKCIALGAVEFLR 116 (559)
Q Consensus 94 -LSa~~d~-----e~v~kAi~~GA~DYLv 116 (559)
.|..... .....|+..||++.++
T Consensus 190 d~SHs~G~r~~v~~~a~AAvA~GAdGl~I 218 (250)
T PRK13397 190 DVSHSTGRRDLLLPAAKIAKAVGANGIMM 218 (250)
T ss_pred CCCCCCcccchHHHHHHHHHHhCCCEEEE
Confidence 6633332 6778899999997653
No 360
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=35.20 E-value=88 Score=31.58 Aligned_cols=37 Identities=22% Similarity=0.170 Sum_probs=34.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHH
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEA 53 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eA 53 (559)
+++|.|||=..-.+..+.+.|++.|+++....+.++.
T Consensus 1 m~~i~IIDyg~GNL~Sv~~Aler~G~~~~vs~d~~~i 37 (204)
T COG0118 1 MMMVAIIDYGSGNLRSVKKALERLGAEVVVSRDPEEI 37 (204)
T ss_pred CCEEEEEEcCcchHHHHHHHHHHcCCeeEEecCHHHH
Confidence 4689999999999999999999999999999988875
No 361
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=35.17 E-value=1.2e+02 Score=31.88 Aligned_cols=94 Identities=12% Similarity=0.078 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhhCCCEEEEECCH------HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEEEEecCCCH
Q 008626 27 SSAAAELKFKLEAMDYIVSTFYNE------NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSNIHCL 100 (559)
Q Consensus 27 ~~~~~~L~~~L~~~gy~V~ta~~~------~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVImLSa~~d~ 100 (559)
..+...++..++..||.+..+... .++++.+.+ ..+|-||+--...+ ..-.+++... .+|+|++.....
T Consensus 74 ~~i~~gi~~~~~~~gy~~~l~~~~~~~~~e~~~~~~l~~--~~vdGiIi~~~~~~-~~~~~~l~~~-~~P~V~i~~~~~- 148 (333)
T COG1609 74 AEILKGIEEAAREAGYSLLLANTDDDPEKEREYLETLLQ--KRVDGLILLGERPN-DSLLELLAAA-GIPVVVIDRSPP- 148 (333)
T ss_pred HHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHH--cCCCEEEEecCCCC-HHHHHHHHhc-CCCEEEEeCCCc-
Confidence 345566777778889998865533 356777777 77887777552222 2233344333 799998876433
Q ss_pred HHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008626 101 STMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 101 e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
. ...+++ ..-+..-...+.++++.+
T Consensus 149 ~--------~~~~~V-~~Dn~~~~~~a~~~L~~~ 173 (333)
T COG1609 149 G--------LGVPSV-GIDNFAGAYLATEHLIEL 173 (333)
T ss_pred c--------CCCCEE-EEChHHHHHHHHHHHHHC
Confidence 1 011122 233455555666666654
No 362
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=35.09 E-value=2.1e+02 Score=30.63 Aligned_cols=61 Identities=20% Similarity=0.160 Sum_probs=41.0
Q ss_pred cEEEEEeCCHHHH-----HHHHHHHhhCCCEEEEEC---------CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHH
Q 008626 18 LRVLLLDQDSSAA-----AELKFKLEAMDYIVSTFY---------NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFL 83 (559)
Q Consensus 18 lrVLIVDDD~~~~-----~~L~~~L~~~gy~V~ta~---------~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLL 83 (559)
-|+|||-|..... ..+...|...|+++..+. +..++.+.+++ ..+|+||. +.+ +.-+++.
T Consensus 26 ~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~--~~~D~IIa---vGG-GSviD~a 99 (357)
T cd08181 26 KRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKK--FNADFVIG---IGG-GSPLDAA 99 (357)
T ss_pred CEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHh--cCCCEEEE---eCC-chHHHHH
Confidence 5899998876522 557777887777666553 35567777777 77898886 344 4445555
Q ss_pred H
Q 008626 84 E 84 (559)
Q Consensus 84 e 84 (559)
+
T Consensus 100 K 100 (357)
T cd08181 100 K 100 (357)
T ss_pred H
Confidence 4
No 363
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=34.89 E-value=93 Score=31.96 Aligned_cols=75 Identities=12% Similarity=0.190 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC--CCcEEEEecCCCHHHHHH
Q 008626 28 SAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNIHCLSTMMK 105 (559)
Q Consensus 28 ~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir--diPVImLSa~~d~e~v~k 105 (559)
.....|.++.++.|....+..-..++++.|.+ +++-..=+.-.+ .+-+.||+.+. ..|||+=|+-...+.+.+
T Consensus 56 e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~----~~~~~~KIaS~d-l~n~~lL~~~A~tgkPvIlSTG~stl~EI~~ 130 (241)
T PF03102_consen 56 EQHKELFEYCKELGIDFFSTPFDEESVDFLEE----LGVPAYKIASGD-LTNLPLLEYIAKTGKPVILSTGMSTLEEIER 130 (241)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHH----HT-SEEEE-GGG-TT-HHHHHHHHTT-S-EEEE-TT--HHHHHH
T ss_pred HHHHHHHHHHHHcCCEEEECCCCHHHHHHHHH----cCCCEEEecccc-ccCHHHHHHHHHhCCcEEEECCCCCHHHHHH
Confidence 34556777778889888866667888888876 344445555556 67788999885 799998888776666555
Q ss_pred HH
Q 008626 106 CI 107 (559)
Q Consensus 106 Ai 107 (559)
|+
T Consensus 131 Av 132 (241)
T PF03102_consen 131 AV 132 (241)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 364
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=34.89 E-value=1.7e+02 Score=27.98 Aligned_cols=73 Identities=15% Similarity=0.168 Sum_probs=49.1
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHh---hCCCE--EEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-
Q 008626 14 FPKGLRVLLLDQDSSAAAELKFKLE---AMDYI--VSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK- 87 (559)
Q Consensus 14 ~p~glrVLIVDDD~~~~~~L~~~L~---~~gy~--V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir- 87 (559)
+|...-++||.||+..++.|+.-.. +.+-. |+.+.+ .++|+.|++ --+.|-| -- .+|-++.+++.
T Consensus 59 ~pg~~plFlVGdD~~S~~WL~~~~~~L~~l~AvGlVVNV~t-~~~L~~Lr~--lapgl~l-----~P-~sgddLA~rL~l 129 (142)
T PF11072_consen 59 LPGLQPLFLVGDDPLSRQWLQQNAEELKQLGAVGLVVNVAT-EAALQRLRQ--LAPGLPL-----LP-VSGDDLARRLGL 129 (142)
T ss_pred CCCCCCEEEEcCCHHHHHHHHHHHHHHHHCCCeEEEEecCC-HHHHHHHHH--HcCCCee-----cC-CCHHHHHHHhCC
Confidence 4444568999999999999976554 44321 333433 677888887 3344444 34 68999999885
Q ss_pred -CCcEEEEe
Q 008626 88 -DLPTIITS 95 (559)
Q Consensus 88 -diPVImLS 95 (559)
+=||+|..
T Consensus 130 ~HYPvLIt~ 138 (142)
T PF11072_consen 130 SHYPVLITA 138 (142)
T ss_pred CcccEEeec
Confidence 88987653
No 365
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=34.67 E-value=90 Score=30.64 Aligned_cols=73 Identities=12% Similarity=0.131 Sum_probs=41.6
Q ss_pred EEEEEeCC---------HHHHHHHHHHHh-hCCCEEEEECCHHHHHH-HhhcCCCCeeEEEEecCCCCCCCH--HH-HHH
Q 008626 19 RVLLLDQD---------SSAAAELKFKLE-AMDYIVSTFYNENEALS-AFSDKPENFHVAIVEVTTSNTDGS--FK-FLE 84 (559)
Q Consensus 19 rVLIVDDD---------~~~~~~L~~~L~-~~gy~V~ta~~~~eAL~-~Lre~~~~pDLVIvDv~MPd~mdG--~e-LLe 84 (559)
||||+... +.....|..+|+ ..+|+|+...+....-. .| ..+|+||+.....+..+. .+ |.+
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~~~~v~~~~~~~~~~~~~L----~~~Dvvv~~~~~~~~l~~~~~~al~~ 76 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEESEGFEVTVTEDPDDLTPENL----KGYDVVVFYNTGGDELTDEQRAALRD 76 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHTTCEEEEECCSGGCTSHHCH----CT-SEEEEE-SSCCGS-HHHHHHHHH
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccCCCEEEEEEeCcccCChhHh----cCCCEEEEECCCCCcCCHHHHHHHHH
Confidence 68888665 257788899998 67899997776333211 23 359999998877531221 11 222
Q ss_pred HcC-CCcEEEEe
Q 008626 85 TAK-DLPTIITS 95 (559)
Q Consensus 85 ~Ir-diPVImLS 95 (559)
.+. ..++|++=
T Consensus 77 ~v~~Ggglv~lH 88 (217)
T PF06283_consen 77 YVENGGGLVGLH 88 (217)
T ss_dssp HHHTT-EEEEEG
T ss_pred HHHcCCCEEEEc
Confidence 222 56777664
No 366
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=34.54 E-value=3.2e+02 Score=27.15 Aligned_cols=75 Identities=15% Similarity=0.154 Sum_probs=47.5
Q ss_pred HHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Q 008626 50 ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLW 128 (559)
Q Consensus 50 ~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iI 128 (559)
.++....++. .|++++=..-....-|..+++.+. .+|||+ |..... +.+..+-.+++..+-+.++|.+.+
T Consensus 258 ~~~~~~~~~~----ad~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~-~~~~~~----~~i~~~~~g~~~~~~d~~~~~~~l 328 (366)
T cd03822 258 DEELPELFSA----ADVVVLPYRSADQTQSGVLAYAIGFGKPVIS-TPVGHA----EEVLDGGTGLLVPPGDPAALAEAI 328 (366)
T ss_pred HHHHHHHHhh----cCEEEecccccccccchHHHHHHHcCCCEEe-cCCCCh----heeeeCCCcEEEcCCCHHHHHHHH
Confidence 5666666665 577765433220012445666654 899875 333332 234556788999999999999998
Q ss_pred HHHHH
Q 008626 129 QHVVH 133 (559)
Q Consensus 129 q~vlr 133 (559)
..++.
T Consensus 329 ~~l~~ 333 (366)
T cd03822 329 RRLLA 333 (366)
T ss_pred HHHHc
Confidence 88774
No 367
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=34.51 E-value=2.6e+02 Score=29.55 Aligned_cols=100 Identities=20% Similarity=0.236 Sum_probs=53.9
Q ss_pred CcEEEEEe--CCH---HHHHHHHHHHhhCCCEEEEECCHHHHHH--Hh-hcCCCCeeEEEEecCCCCCCCH--HHHHHHc
Q 008626 17 GLRVLLLD--QDS---SAAAELKFKLEAMDYIVSTFYNENEALS--AF-SDKPENFHVAIVEVTTSNTDGS--FKFLETA 86 (559)
Q Consensus 17 glrVLIVD--DD~---~~~~~L~~~L~~~gy~V~ta~~~~eAL~--~L-re~~~~pDLVIvDv~MPd~mdG--~eLLe~I 86 (559)
+.+|++|- ... .....+...|++.|++|.......+... .+ ......+|+||+ + + +|| +++++.+
T Consensus 3 ~kkv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~d~vi~---~-G-GDGT~l~~~~~~ 77 (305)
T PRK02645 3 LKQVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMGPSGPKDNPYPVFLASASELIDLAIV---L-G-GDGTVLAAARHL 77 (305)
T ss_pred cCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecCchhhccccchhhccccCcCEEEE---E-C-CcHHHHHHHHHh
Confidence 34677762 222 3345566667778999775443322211 11 111135788888 2 3 566 4455555
Q ss_pred C--CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCC-HHHHHHHHHHHHHH
Q 008626 87 K--DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLS-EDKLRNLWQHVVHK 134 (559)
Q Consensus 87 r--diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis-~eeL~~iIq~vlrr 134 (559)
. ++||+.+.. .|=.+||.-... .++ ...++.+++.
T Consensus 78 ~~~~~pv~gin~------------~G~lGFL~~~~~~~~~-~~~l~~i~~g 115 (305)
T PRK02645 78 APHDIPILSVNV------------GGHLGFLTHPRDLLQD-ESVWDRLQED 115 (305)
T ss_pred ccCCCCEEEEec------------CCcceEecCchhhcch-HHHHHHHHcC
Confidence 3 789888764 245678884321 222 4555555544
No 368
>PLN02501 digalactosyldiacylglycerol synthase
Probab=34.39 E-value=2.3e+02 Score=34.09 Aligned_cols=103 Identities=9% Similarity=0.033 Sum_probs=67.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CCcEEEEe
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIITS 95 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-diPVImLS 95 (559)
+.+++||.|-+. +..|+......+..|........+...+.. .|+.++= ..-+ .-|.-+++.+. .+|||...
T Consensus 577 nvrLvIVGDGP~-reeLe~la~eLgL~V~FLG~~dd~~~lyas----aDVFVlP-S~sE-gFGlVlLEAMA~GlPVVATd 649 (794)
T PLN02501 577 GFNLDVFGNGED-AHEVQRAAKRLDLNLNFLKGRDHADDSLHG----YKVFINP-SISD-VLCTATAEALAMGKFVVCAD 649 (794)
T ss_pred CeEEEEEcCCcc-HHHHHHHHHHcCCEEEecCCCCCHHHHHHh----CCEEEEC-CCcc-cchHHHHHHHHcCCCEEEec
Confidence 478889988875 456777777777766544433334445555 5776663 3345 56778888875 89999776
Q ss_pred cCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008626 96 NIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 96 a~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
.... +. +..|...++. -+.++|...+..++.
T Consensus 650 ~pG~-e~----V~~g~nGll~--~D~EafAeAI~~LLs 680 (794)
T PLN02501 650 HPSN-EF----FRSFPNCLTY--KTSEDFVAKVKEALA 680 (794)
T ss_pred CCCC-ce----EeecCCeEec--CCHHHHHHHHHHHHh
Confidence 5542 11 3456666664 578999988887774
No 369
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=34.33 E-value=2.2e+02 Score=30.44 Aligned_cols=56 Identities=13% Similarity=0.073 Sum_probs=31.5
Q ss_pred HHHHHHHHHhhCCCEEEE--EC--CHHHHHHHhhc-CCCCeeEEEEecCCCCCCCHHHHHHHcC
Q 008626 29 AAAELKFKLEAMDYIVST--FY--NENEALSAFSD-KPENFHVAIVEVTTSNTDGSFKFLETAK 87 (559)
Q Consensus 29 ~~~~L~~~L~~~gy~V~t--a~--~~~eAL~~Lre-~~~~pDLVIvDv~MPd~mdG~eLLe~Ir 87 (559)
.++.+.+.++..|.+|+. .. +..+....|.+ +...+|.||+|..-.. +..++++++
T Consensus 139 ~lq~l~~~~~~~g~~v~~~~~~~~~~~d~~~~L~~ik~~~~~~iil~~~~~~---~~~il~qa~ 199 (371)
T cd06388 139 ILQAIMEKAGQNGWQVSAICVENFNDASYRRLLEDLDRRQEKKFVIDCEIER---LQNILEQIV 199 (371)
T ss_pred HHHHHHHhhHhcCCeeeeEEeccCCcHHHHHHHHHhcccccEEEEEECCHHH---HHHHHHHHH
Confidence 344444445555766552 11 12244444443 2267899999986544 667777775
No 370
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=34.23 E-value=1.7e+02 Score=25.53 Aligned_cols=73 Identities=14% Similarity=0.123 Sum_probs=41.6
Q ss_pred CcEEEEEeC----CHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHc-C--C
Q 008626 17 GLRVLLLDQ----DSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA-K--D 88 (559)
Q Consensus 17 glrVLIVDD----D~~~~~~L~~~L~~~gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~I-r--d 88 (559)
..+|||+=. .......+++.++..|+.+. .+.+..++-+.+ ..+|+||+--++-. -++-++.+ . +
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~~~~~~~~~----~~~Dvill~pqi~~---~~~~i~~~~~~~~ 75 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGSYGAAGEKL----DDADVVLLAPQVAY---MLPDLKKETDKKG 75 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEecHHHHHhhc----CCCCEEEECchHHH---HHHHHHHHhhhcC
Confidence 357776622 22344566777777787665 444444444333 24799999654433 33334433 2 5
Q ss_pred CcEEEEec
Q 008626 89 LPTIITSN 96 (559)
Q Consensus 89 iPVImLSa 96 (559)
+||.++..
T Consensus 76 ipv~~I~~ 83 (95)
T TIGR00853 76 IPVEVING 83 (95)
T ss_pred CCEEEeCh
Confidence 89988765
No 371
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=34.21 E-value=2.6e+02 Score=24.21 Aligned_cols=81 Identities=16% Similarity=0.138 Sum_probs=48.3
Q ss_pred EEEEEeCC--HHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEE-ecCCCCCCCHHHHHHHcC--CCcEEE
Q 008626 19 RVLLLDQD--SSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIV-EVTTSNTDGSFKFLETAK--DLPTII 93 (559)
Q Consensus 19 rVLIVDDD--~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIv-Dv~MPd~mdG~eLLe~Ir--diPVIm 93 (559)
+|+++... ......+...|...|+.+....+.......+... ..-|++|+ ...-.. .+..++++.++ .+++|+
T Consensus 15 ~i~i~g~g~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~iS~~g~~-~~~~~~~~~a~~~g~~iv~ 92 (139)
T cd05013 15 RIYIFGVGSSGLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAANL-TPGDVVIAISFSGET-KETVEAAEIAKERGAKVIA 92 (139)
T ss_pred EEEEEEcCchHHHHHHHHHHHHHcCCceEEecCHHHHHHHHHcC-CCCCEEEEEeCCCCC-HHHHHHHHHHHHcCCeEEE
Confidence 56666543 3444556777777888888877776666554331 12244444 322112 23455666664 799999
Q ss_pred EecCCCHH
Q 008626 94 TSNIHCLS 101 (559)
Q Consensus 94 LSa~~d~e 101 (559)
+|...+..
T Consensus 93 iT~~~~~~ 100 (139)
T cd05013 93 ITDSANSP 100 (139)
T ss_pred EcCCCCCh
Confidence 99987643
No 372
>TIGR00642 mmCoA_mut_beta methylmalonyl-CoA mutase, heterodimeric type, beta chain. The adenosylcobalamin-binding, catalytic chain of methylmalonyl-CoA mutase may form homodimers, as in mitochondrion and E. coli, or heterodimers with a shorter, homologous chain that does not bind adenosylcobalamin. This model describes this non-catalytic beta chain, as found in the enzyme from Propionibacterium freudenreichii, for which the 3-dimensional structure has been solved.
Probab=34.11 E-value=2.5e+02 Score=32.88 Aligned_cols=110 Identities=9% Similarity=-0.071 Sum_probs=71.3
Q ss_pred cEEEEEeCCHH-----HHHHHHHHHhhCCCEEE---EECCHHHHHHHhhcCCCCeeEEEEecCCCCC-CCHHHHHHHcC-
Q 008626 18 LRVLLLDQDSS-----AAAELKFKLEAMDYIVS---TFYNENEALSAFSDKPENFHVAIVEVTTSNT-DGSFKFLETAK- 87 (559)
Q Consensus 18 lrVLIVDDD~~-----~~~~L~~~L~~~gy~V~---ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~-mdG~eLLe~Ir- 87 (559)
-+|+++-=-+. -.......|..-||++. .+.+.+++.+...+ ...+++++.-.-.++ ..+-++++.++
T Consensus 495 P~vfL~~lG~~a~~~aRa~Fa~nff~~gG~~~~~~~~~~~~~~~~~a~~~--sga~i~viCssD~~Y~~~a~~~~~al~~ 572 (619)
T TIGR00642 495 PKVFLLCLGTLADFGGREGFSSNVWHIAGIDTIQVEGGTTAEIVVEAFKK--AGAQVAVLCSSDKVYAQQGLEVAKALKA 572 (619)
T ss_pred CeEEEeCCCChHhhccHHHHHHhHHhcCceeeccCCCCCCHHHHHHHHHh--cCCCEEEEeCCCcchHHHHHHHHHHHHh
Confidence 35666643222 22334455555589887 35678888888877 567888876654442 23556777775
Q ss_pred -CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Q 008626 88 -DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHV 131 (559)
Q Consensus 88 -diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~v 131 (559)
....|+|.+.... +.....+|+++||.--.+.-+++..++.-
T Consensus 573 ag~~~v~lAG~p~~--~~~~~~aGvd~fi~~g~d~~~~L~~~~~~ 615 (619)
T TIGR00642 573 AGAKALYLAGAFKE--FGDDAAEAIDGRLFMKMNVVDTLSSTLDI 615 (619)
T ss_pred CCCCEEEEeCCCcc--hhhHHhcCCcceeEcCCcHHHHHHHHHHH
Confidence 4457777777643 33467899999999999887766665543
No 373
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=34.08 E-value=1.4e+02 Score=29.98 Aligned_cols=68 Identities=10% Similarity=0.206 Sum_probs=50.3
Q ss_pred CCHHHHHHHhhcCCCCeeEEEEecCCCCCCCH--HHHHHHcC---CCcEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008626 48 YNENEALSAFSDKPENFHVAIVEVTTSNTDGS--FKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (559)
Q Consensus 48 ~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG--~eLLe~Ir---diPVImLSa~~d~e~v~kAi~~GA~DYLv 116 (559)
-+..++++.+.+. .--.++++|+.--+.+.| +++++.++ ++|||+--+-.+.+.+.++.+.|+++.++
T Consensus 147 ~~~~~~~~~~~~~-g~~~ii~tdi~~dGt~~G~d~~~~~~l~~~~~~~viasGGv~~~~Dl~~l~~~G~~gviv 219 (229)
T PF00977_consen 147 IDLEEFAKRLEEL-GAGEIILTDIDRDGTMQGPDLELLKQLAEAVNIPVIASGGVRSLEDLRELKKAGIDGVIV 219 (229)
T ss_dssp EEHHHHHHHHHHT-T-SEEEEEETTTTTTSSS--HHHHHHHHHHHSSEEEEESS--SHHHHHHHHHTTECEEEE
T ss_pred cCHHHHHHHHHhc-CCcEEEEeeccccCCcCCCCHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHCCCcEEEE
Confidence 3577778777772 234799999987654455 45666664 89999888888999999999999998886
No 374
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=34.03 E-value=2.2e+02 Score=32.91 Aligned_cols=51 Identities=14% Similarity=0.268 Sum_probs=26.8
Q ss_pred CCeeEEEEecCCCCCCCHHHHHHHcC----CCcEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008626 62 ENFHVAIVEVTTSNTDGSFKFLETAK----DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (559)
Q Consensus 62 ~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPVImLSa~~d~e~v~kAi~~GA~DYLv 116 (559)
.+.|++|+-..-.. +-..++..++ +++||+-+. +.+......+.||+..+.
T Consensus 463 ~~A~~vv~~~~d~~--~n~~i~~~~r~~~p~~~IiaRa~--~~~~~~~L~~~Ga~~vv~ 517 (601)
T PRK03659 463 EKAEAIVITCNEPE--DTMKIVELCQQHFPHLHILARAR--GRVEAHELLQAGVTQFSR 517 (601)
T ss_pred ccCCEEEEEeCCHH--HHHHHHHHHHHHCCCCeEEEEeC--CHHHHHHHHhCCCCEEEc
Confidence 34555555443322 2233333333 566655443 445666777888886663
No 375
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=33.83 E-value=1.7e+02 Score=28.59 Aligned_cols=67 Identities=15% Similarity=0.157 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhhCCCEEEEECC------HHHHHHHhhcCCCCeeEEEEecCCCCCCC--HHHHHHHcC--CCcEEEEecC
Q 008626 28 SAAAELKFKLEAMDYIVSTFYN------ENEALSAFSDKPENFHVAIVEVTTSNTDG--SFKFLETAK--DLPTIITSNI 97 (559)
Q Consensus 28 ~~~~~L~~~L~~~gy~V~ta~~------~~eAL~~Lre~~~~pDLVIvDv~MPd~md--G~eLLe~Ir--diPVImLSa~ 97 (559)
.+...+.+.+++.||.+..+.. ..++++.+.. ..+|.+|+--...+ .. ...+++.+. ++|||++-..
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgii~~~~~~~-~~~~~~~~~~~~~~~~ipvV~~~~~ 92 (273)
T cd01541 16 SIIRGIESVLSEKGYSLLLASTNNDPERERKCLENMLS--QGIDGLIIEPTKSA-LPNPNIDLYLKLEKLGIPYVFINAS 92 (273)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHH--cCCCEEEEeccccc-cccccHHHHHHHHHCCCCEEEEecC
Confidence 3445567777778999886543 2345666666 67998887433222 11 123444442 7999988643
No 376
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.65 E-value=4e+02 Score=28.02 Aligned_cols=100 Identities=14% Similarity=0.095 Sum_probs=58.5
Q ss_pred CcEEEEEeC-CHHHH---HHHHHHHhhCCCEEEEECCHHHHHHHh----hcCCCCeeEEEEecCCCCCCCH--HHHHHHc
Q 008626 17 GLRVLLLDQ-DSSAA---AELKFKLEAMDYIVSTFYNENEALSAF----SDKPENFHVAIVEVTTSNTDGS--FKFLETA 86 (559)
Q Consensus 17 glrVLIVDD-D~~~~---~~L~~~L~~~gy~V~ta~~~~eAL~~L----re~~~~pDLVIvDv~MPd~mdG--~eLLe~I 86 (559)
+.+|.|+-. +.... ..|...|++.|+++.........+... .+....+|+||+ + + +|| +..++.+
T Consensus 10 ~~~i~ii~~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~---i-G-GDGT~L~aa~~~ 84 (287)
T PRK14077 10 IKKIGLVTRPNVSLDKEILKLQKILSIYKVEILLEKESAEILDLPGYGLDELFKISDFLIS---L-G-GDGTLISLCRKA 84 (287)
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHHHHHCCCEEEEecchhhhhcccccchhhcccCCCEEEE---E-C-CCHHHHHHHHHh
Confidence 446777732 22333 344555666788877654433322110 111124788887 2 3 577 3444444
Q ss_pred C--CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008626 87 K--DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (559)
Q Consensus 87 r--diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~ 135 (559)
. ++||+-+. .|=.+||. .++.+++...+..++...
T Consensus 85 ~~~~~PilGIN-------------~G~lGFLt-~~~~~~~~~~l~~i~~g~ 121 (287)
T PRK14077 85 AEYDKFVLGIH-------------AGHLGFLT-DITVDEAEKFFQAFFQGE 121 (287)
T ss_pred cCCCCcEEEEe-------------CCCcccCC-cCCHHHHHHHHHHHHcCC
Confidence 3 68988654 36677877 588899999888887654
No 377
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=33.65 E-value=2.2e+02 Score=29.47 Aligned_cols=85 Identities=16% Similarity=0.064 Sum_probs=54.6
Q ss_pred HHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCC-HH----HHHHHcC-CCcEEEEecCCCHHH
Q 008626 30 AAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDG-SF----KFLETAK-DLPTIITSNIHCLST 102 (559)
Q Consensus 30 ~~~L~~~L~~~gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~md-G~----eLLe~Ir-diPVImLSa~~d~e~ 102 (559)
+..|...-..+|.++. .+.+.+|+...+.. ..++|=++-+--..+. -+ +++..+. ++.+|.-|+-.+.+.
T Consensus 147 l~~l~~~a~~lGle~lVEVh~~~El~~al~~---~a~iiGINnRdL~tf~vd~~~~~~l~~~ip~~~~~iseSGI~~~~d 223 (254)
T PF00218_consen 147 LEELLELAHSLGLEALVEVHNEEELERALEA---GADIIGINNRDLKTFEVDLNRTEELAPLIPKDVIVISESGIKTPED 223 (254)
T ss_dssp HHHHHHHHHHTT-EEEEEESSHHHHHHHHHT---T-SEEEEESBCTTTCCBHTHHHHHHHCHSHTTSEEEEESS-SSHHH
T ss_pred HHHHHHHHHHcCCCeEEEECCHHHHHHHHHc---CCCEEEEeCccccCcccChHHHHHHHhhCccceeEEeecCCCCHHH
Confidence 4555666667898765 89999998888755 4566666554322021 12 2333332 566777788889999
Q ss_pred HHHHHHcCCCEEEeC
Q 008626 103 MMKCIALGAVEFLRK 117 (559)
Q Consensus 103 v~kAi~~GA~DYLvK 117 (559)
+.....+|++++|+-
T Consensus 224 ~~~l~~~G~davLVG 238 (254)
T PF00218_consen 224 ARRLARAGADAVLVG 238 (254)
T ss_dssp HHHHCTTT-SEEEES
T ss_pred HHHHHHCCCCEEEEC
Confidence 999999999999985
No 378
>PRK14967 putative methyltransferase; Provisional
Probab=33.64 E-value=3.1e+02 Score=26.96 Aligned_cols=48 Identities=15% Similarity=0.040 Sum_probs=33.6
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEec
Q 008626 19 RVLLLDQDSSAAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEV 71 (559)
Q Consensus 19 rVLIVDDD~~~~~~L~~~L~~~gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv 71 (559)
+|..+|-++......+..+...+..+. ...+..+ .+.. ..||+||++.
T Consensus 61 ~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~---~~~~--~~fD~Vi~np 109 (223)
T PRK14967 61 SVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR---AVEF--RPFDVVVSNP 109 (223)
T ss_pred eEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh---hccC--CCeeEEEECC
Confidence 889999999888888777776665544 3334333 3334 5799999983
No 379
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=33.55 E-value=2.2e+02 Score=27.53 Aligned_cols=62 Identities=15% Similarity=0.012 Sum_probs=36.6
Q ss_pred HHHHHHHHHhhCCCEEEEECC------HHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHc-CCCcEEEEec
Q 008626 29 AAAELKFKLEAMDYIVSTFYN------ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA-KDLPTIITSN 96 (559)
Q Consensus 29 ~~~~L~~~L~~~gy~V~ta~~------~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~I-rdiPVImLSa 96 (559)
+...+++.++..||.+..+.. ..++++.+.. ..+|.+|+...... .. ..+.+ ..+|+|++..
T Consensus 17 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~vdgiii~~~~~~-~~---~~~~~~~~ipvv~~~~ 85 (267)
T cd06284 17 ILKGIEDEAREAGYGVLLGDTRSDPEREQEYLDLLRR--KQADGIILLDGSLP-PT---ALTALAKLPPIVQACE 85 (267)
T ss_pred HHHHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHH--cCCCEEEEecCCCC-HH---HHHHHhcCCCEEEEec
Confidence 345667777788999875443 2344555666 67897777433222 12 22333 3799998853
No 380
>PF01285 TEA: TEA/ATTS domain family; InterPro: IPR000818 Transcriptional enhancer activators are nuclear proteins that contain a TEA/ATTSdomain, a DNA-binding region of 66-68 amino acids. The TEA/ATTS domain is found in the N-termini of certain gene regulatory proteins, such as the Simian virus 40 (SV40) enhancer factor TEF-1, yeast trans-acting factor TEC-1 (which is required for TY1 enhancer activity), and the Aspergillus abaA regulatory gene product. SV40 and retroviral enhancers, and those to which TEF-1, TEC-1 and abaA proteins bind, contain GT-IIC sites: the TEA/ATTS domain may therefore recognise and bind such sites. Secondary structure predictions suggest the presence of 3 helices, but have not confirmed the presence of the helix-turn-helix motif characteristic of many DNA-binding proteins: DNA-binding may therefore be effected by a different mechanism [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3L15_B 2HZD_A 3KYS_A 3JUA_C 4EAZ_B.
Probab=33.54 E-value=40 Score=37.57 Aligned_cols=52 Identities=23% Similarity=0.303 Sum_probs=29.2
Q ss_pred CCCceecCHHHHHHHHHHHHHhC---CCC------------CCChHHHhhcCCCCCCHHHHHHhhhhh
Q 008626 316 KKMKVDWTPELHKKFVQAVEQLG---VDQ------------AIPSRILELMKVEGLTRHNVASHLQKY 368 (559)
Q Consensus 316 kk~r~~Wt~~lh~~Fv~av~~lg---~~~------------a~pk~il~~m~v~~lt~~~v~shlQky 368 (559)
++..-+|++++...|++|+...- -.| -+-.+|...-| .-=||.+|.||+|--
T Consensus 46 ~~~~~vw~~~~e~af~~al~~~~~~g~~k~~~~~~~~grn~li~~yi~~~tg-~~rt~kqvsshiqvl 112 (431)
T PF01285_consen 46 GDGEGVWPPDIEQAFQEALAIYPPCGRRKLSDEGKMYGRNELISDYIKLKTG-KTRTRKQVSSHIQVL 112 (431)
T ss_dssp GGGS--S-HHHHHHHHHHHHHS-SSS---HHHH-----THHHHHHHHHHHHS-----SHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCCcccccccccccchhHHHHHHHHHhC-cccchhHHHHHHHHH
Confidence 45577999999999999998873 222 00112222222 334889999999998
No 381
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=33.39 E-value=2.8e+02 Score=23.06 Aligned_cols=54 Identities=17% Similarity=0.099 Sum_probs=33.0
Q ss_pred HHHHHHHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEEEEec
Q 008626 29 AAAELKFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSN 96 (559)
Q Consensus 29 ~~~~L~~~L~~~gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVImLSa 96 (559)
+...|++.+...++.+. .+.+..++-. .. ..+|+||+-..+.+ . .++|+|.++.
T Consensus 17 l~~~i~~~~~~~~i~~~v~~~~~~~~~~--~~--~~~Dliist~~~~~-~---------~~~p~i~v~~ 71 (89)
T cd05566 17 VASKVKELLKENGIDVKVEQCKIAEVPS--LL--DDADLIVSTTKVPE-D---------YGIPVINGLP 71 (89)
T ss_pred HHHHHHHHHHHCCCceEEEEecHHHhhc--cc--CCCcEEEEcCCcCC-C---------CCCCEEEEee
Confidence 34556666666677544 3344444444 22 46999999887654 1 1568888765
No 382
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=33.22 E-value=2e+02 Score=27.98 Aligned_cols=61 Identities=11% Similarity=0.074 Sum_probs=35.8
Q ss_pred HHHHHHHHhhCCCEEEEECC---HH---HHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC--CCcEEEEec
Q 008626 30 AAELKFKLEAMDYIVSTFYN---EN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (559)
Q Consensus 30 ~~~L~~~L~~~gy~V~ta~~---~~---eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir--diPVImLSa 96 (559)
...+.+.++..||.+..+.+ .+ +.++.+.+ ..+|.||+--.... -..++.+. .+|+|++-.
T Consensus 18 ~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiii~~~~~~----~~~~~~l~~~~iPvv~~~~ 86 (268)
T cd06273 18 IQAFQETLAAHGYTLLVASSGYDLDREYAQARKLLE--RGVDGLALIGLDHS----PALLDLLARRGVPYVATWN 86 (268)
T ss_pred HHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHh--cCCCEEEEeCCCCC----HHHHHHHHhCCCCEEEEcC
Confidence 34566667788999886543 23 34555556 56887776322212 23344443 799998743
No 383
>PLN02823 spermine synthase
Probab=33.22 E-value=1e+02 Score=33.13 Aligned_cols=54 Identities=19% Similarity=0.258 Sum_probs=38.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhC-----CCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCC
Q 008626 18 LRVLLLDQDSSAAAELKFKLEAM-----DYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTS 74 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~-----gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MP 74 (559)
.+|.+||=|+.+.+..++.|... +-++. ...|+.+.++ +.+..||+||+|+.-|
T Consensus 128 ~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~---~~~~~yDvIi~D~~dp 187 (336)
T PLN02823 128 EKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELE---KRDEKFDVIIGDLADP 187 (336)
T ss_pred CeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHh---hCCCCccEEEecCCCc
Confidence 58999999999999999888532 12343 5566666654 3335799999998554
No 384
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=33.21 E-value=4.8e+02 Score=26.64 Aligned_cols=62 Identities=15% Similarity=0.117 Sum_probs=46.4
Q ss_pred HHHHHhhcCCCCeeEEEEecCCCCCC--CHHHHHHHcC----CCcEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008626 52 EALSAFSDKPENFHVAIVEVTTSNTD--GSFKFLETAK----DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (559)
Q Consensus 52 eAL~~Lre~~~~pDLVIvDv~MPd~m--dG~eLLe~Ir----diPVImLSa~~d~e~v~kAi~~GA~DYLv 116 (559)
+..+.+.+ ...|.|.+|...++ . -.++.++.++ ++|||..-+-.+.+.+.+.++.||+...+
T Consensus 152 ~~a~~l~~--aGad~i~Vd~~~~g-~~~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~GAd~Vmv 219 (231)
T TIGR00736 152 IDALNLVD--DGFDGIHVDAMYPG-KPYADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAGADFVSV 219 (231)
T ss_pred HHHHHHHH--cCCCEEEEeeCCCC-CchhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhCCCeEEE
Confidence 44455666 67898899976655 3 2367777764 48888888888899999999999998865
No 385
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=33.11 E-value=3.4e+02 Score=26.54 Aligned_cols=64 Identities=20% Similarity=0.317 Sum_probs=39.6
Q ss_pred EEEEecCCCCCCCHHHHHHHcC---CCcEEEEecCCCHHHHHHHHHcCCCEEEe--CCCCHHHHHHHHHH
Q 008626 66 VAIVEVTTSNTDGSFKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLR--KPLSEDKLRNLWQH 130 (559)
Q Consensus 66 LVIvDv~MPd~mdG~eLLe~Ir---diPVImLSa~~d~e~v~kAi~~GA~DYLv--KPis~eeL~~iIq~ 130 (559)
|-++|...-- ...++.++.++ ++||++...-.+...+..+++.||+..++ .-+..+++...++.
T Consensus 48 l~v~~~~~~~-~g~~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~ 116 (217)
T cd00331 48 ISVLTEPKYF-QGSLEDLRAVREAVSLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYEL 116 (217)
T ss_pred EEEEeCcccc-CCCHHHHHHHHHhcCCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHH
Confidence 3344443333 34566666664 79999865445666788999999999973 22333445444443
No 386
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=32.89 E-value=2.2e+02 Score=31.14 Aligned_cols=85 Identities=16% Similarity=0.203 Sum_probs=48.4
Q ss_pred cEEEEEeCCHH---HHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecC-CCCCCCH--HHHHHHcC--CC
Q 008626 18 LRVLLLDQDSS---AAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVT-TSNTDGS--FKFLETAK--DL 89 (559)
Q Consensus 18 lrVLIVDDD~~---~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~-MPd~mdG--~eLLe~Ir--di 89 (559)
.+|.+|..|.. -.+.|..+.+..|..+..+.+..+....+.+. ..+|+||+|.- +.. .+. .+.+..+. ..
T Consensus 168 ~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l-~~~DlVLIDTaG~~~-~d~~l~e~La~L~~~~~ 245 (374)
T PRK14722 168 SKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL-RNKHMVLIDTIGMSQ-RDRTVSDQIAMLHGADT 245 (374)
T ss_pred CeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh-cCCCEEEEcCCCCCc-ccHHHHHHHHHHhccCC
Confidence 47888877664 23445555555677776666555554444432 34799999984 222 222 23444442 33
Q ss_pred c---EEEEecCCCHHHHH
Q 008626 90 P---TIITSNIHCLSTMM 104 (559)
Q Consensus 90 P---VImLSa~~d~e~v~ 104 (559)
+ ++++++....+.+.
T Consensus 246 ~~~~lLVLsAts~~~~l~ 263 (374)
T PRK14722 246 PVQRLLLLNATSHGDTLN 263 (374)
T ss_pred CCeEEEEecCccChHHHH
Confidence 3 78888776655543
No 387
>PRK09526 lacI lac repressor; Reviewed
Probab=32.85 E-value=1.8e+02 Score=29.71 Aligned_cols=64 Identities=16% Similarity=0.268 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhhCCCEEEEECC----H---HHHHHHhhcCCCCeeEEEEecCCCCCCCHHH-HHHHcCCCcEEEEe
Q 008626 28 SAAAELKFKLEAMDYIVSTFYN----E---NEALSAFSDKPENFHVAIVEVTTSNTDGSFK-FLETAKDLPTIITS 95 (559)
Q Consensus 28 ~~~~~L~~~L~~~gy~V~ta~~----~---~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~e-LLe~IrdiPVImLS 95 (559)
.+...++..+...||.+..+.. . .+.++.+.+ ..+|-||+...... +... ++.....+|+|++-
T Consensus 80 ~~~~gi~~~a~~~g~~~~i~~~~~~~~~~~~~~l~~l~~--~~vdGiii~~~~~~--~~~~~~~~~~~~iPvV~~d 151 (342)
T PRK09526 80 QIAAAIKSRADQLGYSVVISMVERSGVEACQAAVNELLA--QRVSGVIINVPLED--ADAEKIVADCADVPCLFLD 151 (342)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHh--cCCCEEEEecCCCc--chHHHHHhhcCCCCEEEEe
Confidence 3556677778888999875431 1 245666666 67998888532222 2232 23223479999874
No 388
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=32.79 E-value=2.5e+02 Score=32.22 Aligned_cols=99 Identities=12% Similarity=0.134 Sum_probs=58.0
Q ss_pred cEEEEE--eCCHHHHHH---HHHHHh-hCCCEEEEECCHHHHHH----------------HhhcCCCCeeEEEEecCCCC
Q 008626 18 LRVLLL--DQDSSAAAE---LKFKLE-AMDYIVSTFYNENEALS----------------AFSDKPENFHVAIVEVTTSN 75 (559)
Q Consensus 18 lrVLIV--DDD~~~~~~---L~~~L~-~~gy~V~ta~~~~eAL~----------------~Lre~~~~pDLVIvDv~MPd 75 (559)
.+|+|| -+.+...+. |...|. ..|+.|.........+. .+.+....+|+||+ + +
T Consensus 195 ~~VgIV~n~~k~~a~el~~~I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIs---i-G 270 (508)
T PLN02935 195 QTVLIITKPNSTSVRVLCAEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFVQTWEDEKEILLLHTKVDLVIT---L-G 270 (508)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHhcCCCEEEEechhhhhhccccccccccccccccchhhhcccCCCEEEE---E-C
Confidence 467777 344444444 444555 46788776543322221 00001124788877 2 3
Q ss_pred CCCHH--HHHHHcC--CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008626 76 TDGSF--KFLETAK--DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (559)
Q Consensus 76 ~mdG~--eLLe~Ir--diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~ 135 (559)
+||. ..++.+. .+||+-+ ..|=.+||. +++.+++...+..++++.
T Consensus 271 -GDGTlL~Aar~~~~~~iPILGI-------------N~G~LGFLt-~i~~~e~~~~Le~il~G~ 319 (508)
T PLN02935 271 -GDGTVLWAASMFKGPVPPVVPF-------------SMGSLGFMT-PFHSEQYRDCLDAILKGP 319 (508)
T ss_pred -CcHHHHHHHHHhccCCCcEEEE-------------eCCCcceec-ccCHHHHHHHHHHHHcCC
Confidence 5773 3334333 5888754 468888985 789999999999988754
No 389
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=32.73 E-value=2.6e+02 Score=29.60 Aligned_cols=105 Identities=10% Similarity=0.057 Sum_probs=66.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCC--EEEEEC--CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CCcE
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAMDY--IVSTFY--NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPT 91 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy--~V~ta~--~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-diPV 91 (559)
..+++|+.+.+. ...+++++++.++ .|.... +.++....+.. .|++|+-.. .+ .-|+.+++.+. .+||
T Consensus 224 ~~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~~~G~~~~~~~~~~l~~----ad~~v~pS~-~E-~~g~~~~EAma~G~PV 296 (398)
T cd03796 224 NVRFIIGGDGPK-RILLEEMREKYNLQDRVELLGAVPHERVRDVLVQ----GHIFLNTSL-TE-AFCIAIVEAASCGLLV 296 (398)
T ss_pred CEEEEEEeCCch-HHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHh----CCEEEeCCh-hh-ccCHHHHHHHHcCCCE
Confidence 478888887653 4567777776654 244333 35677777766 588777443 34 55778888875 8999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008626 92 IITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 92 ImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
|+....+-.+. +..|.. ++. +-+.++|.+.+..++..
T Consensus 297 I~s~~gg~~e~----i~~~~~-~~~-~~~~~~l~~~l~~~l~~ 333 (398)
T cd03796 297 VSTRVGGIPEV----LPPDMI-LLA-EPDVESIVRKLEEAISI 333 (398)
T ss_pred EECCCCCchhh----eeCCce-eec-CCCHHHHHHHHHHHHhC
Confidence 76433333332 334433 444 44899999998887753
No 390
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=32.72 E-value=1.7e+02 Score=31.53 Aligned_cols=76 Identities=13% Similarity=0.120 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC--CCcEEEEecCCCHHHHH
Q 008626 27 SSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNIHCLSTMM 104 (559)
Q Consensus 27 ~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir--diPVImLSa~~d~e~v~ 104 (559)
......|.+..++.|..+.+..-..+++++|.+ ..+| +.=+.-.+ +.-+.||+.+. ..|||+=|+-.+.+.+.
T Consensus 75 ~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~--~~v~--~~KIaS~~-~~n~pLL~~~A~~gkPvilStGmatl~Ei~ 149 (329)
T TIGR03569 75 EEDHRELKEYCESKGIEFLSTPFDLESADFLED--LGVP--RFKIPSGE-ITNAPLLKKIARFGKPVILSTGMATLEEIE 149 (329)
T ss_pred HHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHh--cCCC--EEEECccc-ccCHHHHHHHHhcCCcEEEECCCCCHHHHH
Confidence 345566777777889988877777888888877 3344 44555556 67799999985 79999888877666655
Q ss_pred HHH
Q 008626 105 KCI 107 (559)
Q Consensus 105 kAi 107 (559)
.|+
T Consensus 150 ~Av 152 (329)
T TIGR03569 150 AAV 152 (329)
T ss_pred HHH
Confidence 554
No 391
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=32.69 E-value=1.6e+02 Score=29.08 Aligned_cols=78 Identities=15% Similarity=0.153 Sum_probs=50.7
Q ss_pred EEEE-eCCHHHHHHHHHHHhhCCCEEEEEC-------CHHHHHHHhhcCCCCeeEEEEecC-CCCCCCHHHHHHHcC---
Q 008626 20 VLLL-DQDSSAAAELKFKLEAMDYIVSTFY-------NENEALSAFSDKPENFHVAIVEVT-TSNTDGSFKFLETAK--- 87 (559)
Q Consensus 20 VLIV-DDD~~~~~~L~~~L~~~gy~V~ta~-------~~~eAL~~Lre~~~~pDLVIvDv~-MPd~mdG~eLLe~Ir--- 87 (559)
|+|| |-|...++.++..-++.|.+++..+ ++++.++++.+.++.|=+|++|-. ..+...|-+.++.+.
T Consensus 2 VIlvTDGD~~A~ravE~aa~~iGgRCIS~S~GNPT~lsG~elV~lIk~a~~DPV~VMfDD~G~~g~G~GE~Al~~v~~h~ 81 (180)
T PF14097_consen 2 VILVTDGDEYAKRAVEIAAKNIGGRCISQSAGNPTPLSGEELVELIKQAPHDPVLVMFDDKGFIGEGPGEQALEYVANHP 81 (180)
T ss_pred EEEEECChHHHHHHHHHHHHHhCcEEEeccCCCCCcCCHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccHHHHHHHHcCC
Confidence 4444 5566666677777777888888654 789999999986566777777653 233244667777663
Q ss_pred C---CcEEEEecC
Q 008626 88 D---LPTIITSNI 97 (559)
Q Consensus 88 d---iPVImLSa~ 97 (559)
+ +-+|.++++
T Consensus 82 ~IeVLG~iAVASn 94 (180)
T PF14097_consen 82 DIEVLGAIAVASN 94 (180)
T ss_pred CceEEEEEEEEec
Confidence 3 444555544
No 392
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=32.68 E-value=1.1e+02 Score=36.28 Aligned_cols=76 Identities=21% Similarity=0.270 Sum_probs=47.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEe-c-CCCCCCCHHHHHHHc--CCCcE
Q 008626 16 KGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVE-V-TTSNTDGSFKFLETA--KDLPT 91 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvD-v-~MPd~mdG~eLLe~I--rdiPV 91 (559)
.+.+|+|||-.......|..+|++.|+.+.++.... ..+.+.. ..+|.||+- = .-+...+-.++++.+ .++||
T Consensus 515 ~~~~IlVID~gds~~~~l~~~L~~~G~~v~vv~~~~-~~~~~~~--~~~DgLILsgGPGsp~d~~~~~~I~~~~~~~iPv 591 (717)
T TIGR01815 515 EGRRILLVDHEDSFVHTLANYLRQTGASVTTLRHSH-AEAAFDE--RRPDLVVLSPGPGRPADFDVAGTIDAALARGLPV 591 (717)
T ss_pred CCCEEEEEECCChhHHHHHHHHHHCCCeEEEEECCC-Chhhhhh--cCCCEEEEcCCCCCchhcccHHHHHHHHHCCCCE
Confidence 568999999887788899999999999887664331 1222233 458887771 1 111102224455543 27888
Q ss_pred EEE
Q 008626 92 IIT 94 (559)
Q Consensus 92 ImL 94 (559)
+-+
T Consensus 592 LGI 594 (717)
T TIGR01815 592 FGV 594 (717)
T ss_pred EEE
Confidence 765
No 393
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=32.26 E-value=1.9e+02 Score=27.98 Aligned_cols=61 Identities=15% Similarity=0.062 Sum_probs=37.4
Q ss_pred HHHHHHHHhhCCCEEEEECC------HHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHc--CCCcEEEEec
Q 008626 30 AAELKFKLEAMDYIVSTFYN------ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA--KDLPTIITSN 96 (559)
Q Consensus 30 ~~~L~~~L~~~gy~V~ta~~------~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~I--rdiPVImLSa 96 (559)
...+...++..||.+..+.. ..++++.+.. ..+|-||+.-.... -+.++.+ ..+|+|++..
T Consensus 18 ~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiii~~~~~~----~~~~~~~~~~~ipvv~~~~ 86 (268)
T cd01575 18 LQGISDVLEAAGYQLLLGNTGYSPEREEELLRTLLS--RRPAGLILTGLEHT----ERTRQLLRAAGIPVVEIMD 86 (268)
T ss_pred HHHHHHHHHHcCCEEEEecCCCCchhHHHHHHHHHH--cCCCEEEEeCCCCC----HHHHHHHHhcCCCEEEEec
Confidence 34566667778999875433 2456666666 67897777543322 2233333 2799998853
No 394
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=32.26 E-value=2.5e+02 Score=28.86 Aligned_cols=75 Identities=15% Similarity=0.179 Sum_probs=46.4
Q ss_pred CCcEEEEEe-CCHHHHHHHHHHHhhCCCEEEEECC-------HHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC
Q 008626 16 KGLRVLLLD-QDSSAAAELKFKLEAMDYIVSTFYN-------ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK 87 (559)
Q Consensus 16 ~glrVLIVD-DD~~~~~~L~~~L~~~gy~V~ta~~-------~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir 87 (559)
.+..|..+- ++.. .+.+.|+..||.|....+ ..+.++.|++ ..+|+||+|.- . .+. ++.+.++
T Consensus 30 ~g~~v~f~~~~~~~---~~~~~i~~~g~~v~~~~~~~~~~~d~~~~~~~l~~--~~~d~vV~D~y--~-~~~-~~~~~~k 100 (279)
T TIGR03590 30 QGAEVAFACKPLPG---DLIDLLLSAGFPVYELPDESSRYDDALELINLLEE--EKFDILIVDHY--G-LDA-DWEKLIK 100 (279)
T ss_pred CCCEEEEEeCCCCH---HHHHHHHHcCCeEEEecCCCchhhhHHHHHHHHHh--cCCCEEEEcCC--C-CCH-HHHHHHH
Confidence 355665554 3333 235677888999886643 4467777777 68999999985 2 222 2344443
Q ss_pred --CCcEEEEecCCC
Q 008626 88 --DLPTIITSNIHC 99 (559)
Q Consensus 88 --diPVImLSa~~d 99 (559)
..+++++....+
T Consensus 101 ~~~~~l~~iDD~~~ 114 (279)
T TIGR03590 101 EFGRKILVIDDLAD 114 (279)
T ss_pred HhCCeEEEEecCCC
Confidence 567777776543
No 395
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=32.17 E-value=2.4e+02 Score=29.03 Aligned_cols=73 Identities=11% Similarity=0.175 Sum_probs=49.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhC-CCEEEEEC----C---HHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC
Q 008626 16 KGLRVLLLDQDSSAAAELKFKLEAM-DYIVSTFY----N---ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK 87 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~-gy~V~ta~----~---~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir 87 (559)
.+.+|.++...+.+.+.+.+.|++. +.++.-+. + .++.++.|.+ ..+|+|++-+.+|. ..- ++...+
T Consensus 104 ~~~~v~llG~~~~v~~~a~~~l~~~y~l~i~g~~~Gyf~~~e~~~i~~~I~~--s~~dil~VglG~Pk-QE~--~~~~~~ 178 (243)
T PRK03692 104 EGTPVFLVGGKPEVLAQTEAKLRTQWNVNIVGSQDGYFTPEQRQALFERIHA--SGAKIVTVAMGSPK-QEI--FMRDCR 178 (243)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHHHhCCEEEEEeCCCCCHHHHHHHHHHHHh--cCCCEEEEECCCcH-HHH--HHHHHH
Confidence 4689999999999999999988653 55554221 2 2334666666 78999999999998 443 344443
Q ss_pred ---CCcEEE
Q 008626 88 ---DLPTII 93 (559)
Q Consensus 88 ---diPVIm 93 (559)
..+|++
T Consensus 179 ~~~~~~v~~ 187 (243)
T PRK03692 179 LVYPDALYM 187 (243)
T ss_pred HhCCCCEEE
Confidence 345543
No 396
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=32.14 E-value=2e+02 Score=30.93 Aligned_cols=50 Identities=12% Similarity=0.093 Sum_probs=31.6
Q ss_pred cEEEEEeCCHHHH-----HHHHHHHhhCCCEEEEEC---------CHHHHHHHhhcCCCCeeEEEE
Q 008626 18 LRVLLLDQDSSAA-----AELKFKLEAMDYIVSTFY---------NENEALSAFSDKPENFHVAIV 69 (559)
Q Consensus 18 lrVLIVDDD~~~~-----~~L~~~L~~~gy~V~ta~---------~~~eAL~~Lre~~~~pDLVIv 69 (559)
-|+|||.|..... ..+...|+..|+++..+. +.+++.+.+++ ..+|+||-
T Consensus 24 ~r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~--~~~D~IIa 87 (375)
T cd08179 24 KKAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMRE--FEPDWIIA 87 (375)
T ss_pred CeEEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHh--cCCCEEEE
Confidence 4788887765443 456677766666665543 25566666666 56777765
No 397
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=32.10 E-value=89 Score=29.83 Aligned_cols=48 Identities=21% Similarity=0.194 Sum_probs=32.2
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEE
Q 008626 20 VLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIV 69 (559)
Q Consensus 20 VLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIv 69 (559)
|||+|.-......+.+.|++.|+++..+............ ..+|.||+
T Consensus 1 il~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~--~~~dgvil 48 (184)
T cd01743 1 ILLIDNYDSFTYNLVQYLRELGAEVVVVRNDEITLEELEL--LNPDAIVI 48 (184)
T ss_pred CEEEeCCCccHHHHHHHHHHcCCceEEEeCCCCCHHHHhh--cCCCEEEE
Confidence 6899988888889999999999887755443332211112 34787665
No 398
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=32.09 E-value=78 Score=32.45 Aligned_cols=87 Identities=14% Similarity=0.029 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhhCCCEEEEE---CCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHH-HHHHHcC----CCcEEEEecCCC
Q 008626 28 SAAAELKFKLEAMDYIVSTF---YNENEALSAFSDKPENFHVAIVEVTTSNTDGSF-KFLETAK----DLPTIITSNIHC 99 (559)
Q Consensus 28 ~~~~~L~~~L~~~gy~V~ta---~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~-eLLe~Ir----diPVImLSa~~d 99 (559)
.=..++..+|+..||+|+-. ...+++++..++ .++|+|-+-..|...|-++ ++++.++ .-+|+++..-..
T Consensus 119 IGk~iV~~ml~~aGfevidLG~dvP~e~fve~a~e--~k~d~v~~SalMTttm~~~~~viE~L~eeGiRd~v~v~vGGAp 196 (227)
T COG5012 119 IGKNIVATMLEAAGFEVIDLGRDVPVEEFVEKAKE--LKPDLVSMSALMTTTMIGMKDVIELLKEEGIRDKVIVMVGGAP 196 (227)
T ss_pred HHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHHH--cCCcEEechHHHHHHHHHHHHHHHHHHHcCCccCeEEeecCcc
Confidence 33466788888899999843 357788888888 7799999888877534443 3444543 456666643321
Q ss_pred HHHHHHHHHcCCCEEEeC
Q 008626 100 LSTMMKCIALGAVEFLRK 117 (559)
Q Consensus 100 ~e~v~kAi~~GA~DYLvK 117 (559)
-...-+-+.||+.|---
T Consensus 197 -vtq~~a~~iGAD~~~~d 213 (227)
T COG5012 197 -VTQDWADKIGADAYAED 213 (227)
T ss_pred -ccHHHHHHhCCCccCcC
Confidence 12223567789888643
No 399
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=32.06 E-value=2.2e+02 Score=27.62 Aligned_cols=65 Identities=18% Similarity=0.203 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhhCCCEEEEECC-------HHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CCcEEEEec
Q 008626 27 SSAAAELKFKLEAMDYIVSTFYN-------ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSN 96 (559)
Q Consensus 27 ~~~~~~L~~~L~~~gy~V~ta~~-------~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-diPVImLSa 96 (559)
..+...+++.+.+.||.+..+.. ..+.++.+.+ ..+|-||+...... ...+.+... .+|+|++-.
T Consensus 15 ~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiii~~~~~~---~~~~~~~~~~~ipvv~~~~ 87 (264)
T cd01574 15 SSTLAAIESAAREAGYAVTLSMLAEADEEALRAAVRRLLA--QRVDGVIVNAPLDD---ADAALAAAPADVPVVFVDG 87 (264)
T ss_pred HHHHHHHHHHHHHCCCeEEEEeCCCCchHHHHHHHHHHHh--cCCCEEEEeCCCCC---hHHHHHHHhcCCCEEEEec
Confidence 34566777888888998764321 2244555656 67998887554333 223333333 799998854
No 400
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=31.91 E-value=3.2e+02 Score=25.90 Aligned_cols=62 Identities=15% Similarity=0.161 Sum_probs=37.3
Q ss_pred HHHHHHHhhCCCEEEEECCH------HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC--CCcEEEEecCC
Q 008626 31 AELKFKLEAMDYIVSTFYNE------NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNIH 98 (559)
Q Consensus 31 ~~L~~~L~~~gy~V~ta~~~------~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir--diPVImLSa~~ 98 (559)
..++..+...||.+..+... .++++.+.. ..+|.||+....+. ... ++.+. .+|||++....
T Consensus 19 ~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~iii~~~~~~---~~~-~~~~~~~~ipvv~~~~~~ 88 (264)
T cd06267 19 RGIEEAAREAGYSVLLCNSDEDPEKEREALELLLS--RRVDGIILAPSRLD---DEL-LEELAALGIPVVLVDRPL 88 (264)
T ss_pred HHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHH--cCcCEEEEecCCcc---hHH-HHHHHHcCCCEEEecccc
Confidence 44555566678887744432 345555555 57898888554433 333 44443 79999887653
No 401
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=31.90 E-value=2e+02 Score=28.97 Aligned_cols=79 Identities=16% Similarity=0.127 Sum_probs=50.3
Q ss_pred HHHhhCCCE--EEEECCHHHHHHHhhcCCCCeeEEEEec-CC--CCCCCHHHHHHHcC--------CCcEEEEecCCCHH
Q 008626 35 FKLEAMDYI--VSTFYNENEALSAFSDKPENFHVAIVEV-TT--SNTDGSFKFLETAK--------DLPTIITSNIHCLS 101 (559)
Q Consensus 35 ~~L~~~gy~--V~ta~~~~eAL~~Lre~~~~pDLVIvDv-~M--Pd~mdG~eLLe~Ir--------diPVImLSa~~d~e 101 (559)
+.|+..|+. ++.+.+..+|+...... .++|=.=+ +| -+ .+|+++++.+. +.. |+.++-.+..
T Consensus 95 ~~L~~~Gi~v~~T~vfs~~Qa~~Aa~aG---a~yispyvgRi~d~g-~dg~~~v~~~~~~~~~~~~~tk-IlaAS~r~~~ 169 (213)
T TIGR00875 95 KILKKEGIKTNVTLVFSAAQALLAAKAG---ATYVSPFVGRLDDIG-GDGMKLIEEVKTIFENHAPDTE-VIAASVRHPR 169 (213)
T ss_pred HHHHHCCCceeEEEecCHHHHHHHHHcC---CCEEEeecchHHHcC-CCHHHHHHHHHHHHHHcCCCCE-EEEeccCCHH
Confidence 345566654 45677888888777762 33332222 11 13 57888888763 355 5566667788
Q ss_pred HHHHHHHcCCCEEEeCC
Q 008626 102 TMMKCIALGAVEFLRKP 118 (559)
Q Consensus 102 ~v~kAi~~GA~DYLvKP 118 (559)
.+.++...|++-+-+-|
T Consensus 170 ~v~~~~~~G~d~vTip~ 186 (213)
T TIGR00875 170 HVLEAALIGADIATMPL 186 (213)
T ss_pred HHHHHHHcCCCEEEcCH
Confidence 88999999998766543
No 402
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=31.90 E-value=1.5e+02 Score=29.53 Aligned_cols=64 Identities=9% Similarity=-0.006 Sum_probs=36.4
Q ss_pred HHHHHHHHhhCCCEEEEECC-----HHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEEEEec
Q 008626 30 AAELKFKLEAMDYIVSTFYN-----ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSN 96 (559)
Q Consensus 30 ~~~L~~~L~~~gy~V~ta~~-----~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVImLSa 96 (559)
...+...+++.||.+..+.. ..+.++.+.+ ..+|-||+--...+ ..-.++++...++|+|++..
T Consensus 21 ~~gi~~~~~~~gy~~~i~~~~~~~~~~~~i~~l~~--~~vdgiI~~~~~~~-~~~~~~~~~~~~~PiV~i~~ 89 (265)
T cd06354 21 WEGLERAAKELGIEYKYVESKSDADYEPNLEQLAD--AGYDLIVGVGFLLA-DALKEVAKQYPDQKFAIIDA 89 (265)
T ss_pred HHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHh--CCCCEEEEcCcchH-HHHHHHHHHCCCCEEEEEec
Confidence 34556667778998886532 2345566666 67998887321111 11123333334789998854
No 403
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=31.88 E-value=4.7e+02 Score=28.12 Aligned_cols=107 Identities=13% Similarity=0.155 Sum_probs=65.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhC--CCEEEEE--CCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CCcEE
Q 008626 18 LRVLLLDQDSSAAAELKFKLEAM--DYIVSTF--YNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTI 92 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~--gy~V~ta--~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-diPVI 92 (559)
+++.++.+.+. ...++.+.... ...|... -+.++..+.+.. ...|+++.-- ..+ .-|..+++.+. .+|||
T Consensus 264 l~~~iiG~g~~-~~~l~~~~~~~~~~~~V~f~G~v~~~e~~~~~~~--~~~~v~v~~S-~~E-g~p~~llEAma~G~PVI 338 (407)
T cd04946 264 IKWTHIGGGPL-EDTLKELAESKPENISVNFTGELSNSEVYKLYKE--NPVDVFVNLS-ESE-GLPVSIMEAMSFGIPVI 338 (407)
T ss_pred EEEEEEeCchH-HHHHHHHHHhcCCCceEEEecCCChHHHHHHHhh--cCCCEEEeCC-ccc-cccHHHHHHHHcCCCEE
Confidence 44455665443 34455555433 2344432 345666677665 4567665422 233 34667888775 89998
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHH
Q 008626 93 ITSNIHCLSTMMKCIALGAVEFLRKPL-SEDKLRNLWQHVVH 133 (559)
Q Consensus 93 mLSa~~d~e~v~kAi~~GA~DYLvKPi-s~eeL~~iIq~vlr 133 (559)
. |..+. +.+.+..|.++++.-+- +.++|.+.+..++.
T Consensus 339 a-s~vgg---~~e~i~~~~~G~l~~~~~~~~~la~~I~~ll~ 376 (407)
T cd04946 339 A-TNVGG---TPEIVDNGGNGLLLSKDPTPNELVSSLSKFID 376 (407)
T ss_pred e-CCCCC---cHHHhcCCCcEEEeCCCCCHHHHHHHHHHHHh
Confidence 6 44333 34567788889998764 78999999988774
No 404
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=31.77 E-value=1.1e+02 Score=31.60 Aligned_cols=53 Identities=15% Similarity=0.193 Sum_probs=32.9
Q ss_pred cEEEEEeCCHHH---HHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEec
Q 008626 18 LRVLLLDQDSSA---AAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEV 71 (559)
Q Consensus 18 lrVLIVDDD~~~---~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv 71 (559)
.+|.+|+-|+.. ...|...-...|+.+..+.+..+..+.+... ..+|+||+|.
T Consensus 225 ~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~-~~~d~vliDt 280 (282)
T TIGR03499 225 KKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRL-RDKDLILIDT 280 (282)
T ss_pred CeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHc-cCCCEEEEeC
Confidence 688888877632 2334444444566666666666666666553 3479999985
No 405
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=31.73 E-value=1.4e+02 Score=30.42 Aligned_cols=65 Identities=8% Similarity=0.013 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhhCCCEEEEECCH------HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC--CCcEEEEec
Q 008626 28 SAAAELKFKLEAMDYIVSTFYNE------NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (559)
Q Consensus 28 ~~~~~L~~~L~~~gy~V~ta~~~------~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir--diPVImLSa 96 (559)
.+.+.+++.++..||.++.+... .++++.+.. ..+|.||+--..+. ..-+.++.++ .+|||++-.
T Consensus 15 ~~~~~i~~~a~~~g~~v~~~~~~~~~~~q~~~i~~l~~--~~vDgIIi~~~~~~--~~~~~l~~~~~~~iPvV~~d~ 87 (302)
T TIGR02634 15 KDRDIFVAAAESLGAKVFVQSANGNEAKQISQIENLIA--RGVDVLVIIPQNGQ--VLSNAVQEAKDEGIKVVAYDR 87 (302)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCCCHHHHHHHHHHHHH--cCCCEEEEeCCChh--HHHHHHHHHHHCCCeEEEecC
Confidence 34567788888889998865432 246666666 67998887432211 1134555553 789998854
No 406
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=31.68 E-value=3.3e+02 Score=29.43 Aligned_cols=87 Identities=9% Similarity=0.012 Sum_probs=52.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCC-EEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC--CC-cE
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAMDY-IVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DL-PT 91 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy-~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir--di-PV 91 (559)
+.+|+-||-++...+..+.-++..+. .+. .+.+..+.+.... ..||+||+|- |...-+-++++.+. .. -|
T Consensus 255 ~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~---~~~D~vi~DP--Pr~G~~~~~l~~l~~~~p~~i 329 (374)
T TIGR02085 255 DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQM---SAPELVLVNP--PRRGIGKELCDYLSQMAPKFI 329 (374)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcC---CCCCEEEECC--CCCCCcHHHHHHHHhcCCCeE
Confidence 35899999999999988888877665 333 5667666654321 3599999994 33111235555553 22 45
Q ss_pred EEEecCCCHHHHHHHHHc
Q 008626 92 IITSNIHCLSTMMKCIAL 109 (559)
Q Consensus 92 ImLSa~~d~e~v~kAi~~ 109 (559)
|.+|. .....++++...
T Consensus 330 vyvsc-~p~TlaRDl~~L 346 (374)
T TIGR02085 330 LYSSC-NAQTMAKDIAEL 346 (374)
T ss_pred EEEEe-CHHHHHHHHHHh
Confidence 55554 444455555444
No 407
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=31.64 E-value=4.4e+02 Score=31.82 Aligned_cols=65 Identities=15% Similarity=0.160 Sum_probs=48.1
Q ss_pred eeEEEEecCCCCCCCHHHHHHHcC-CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008626 64 FHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 64 pDLVIvDv~MPd~mdG~eLLe~Ir-diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
.|++++= ...+ .-|+-+++.+. .+|||+ |..+. ..+.+..|..+|++.|.+.++|.+.+..++.+
T Consensus 644 adVfV~P-S~~E-pFGLvvLEAMAcGlPVVA-T~~GG---~~EiV~dg~tGfLVdp~D~eaLA~aL~~ll~k 709 (784)
T TIGR02470 644 KGIFVQP-ALYE-AFGLTVLEAMTCGLPTFA-TRFGG---PLEIIQDGVSGFHIDPYHGEEAAEKIVDFFEK 709 (784)
T ss_pred CcEEEEC-Cccc-CCCHHHHHHHHcCCCEEE-cCCCC---HHHHhcCCCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 4666553 3445 56888898876 899986 44444 33456789999999999999999998887643
No 408
>PRK04457 spermidine synthase; Provisional
Probab=31.62 E-value=1.4e+02 Score=30.70 Aligned_cols=52 Identities=12% Similarity=0.055 Sum_probs=38.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhC--CCEEE-EECCHHHHHHHhhcCCCCeeEEEEec
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAM--DYIVS-TFYNENEALSAFSDKPENFHVAIVEV 71 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~--gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv 71 (559)
..+|.+||=|+.+.+..++.+... +-++. ...++.+.+.... ..||+|++|.
T Consensus 90 ~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~---~~yD~I~~D~ 144 (262)
T PRK04457 90 DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHR---HSTDVILVDG 144 (262)
T ss_pred CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCC---CCCCEEEEeC
Confidence 468999999999999988887643 23443 5567777765432 4799999996
No 409
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=31.51 E-value=2.7e+02 Score=29.95 Aligned_cols=50 Identities=16% Similarity=0.150 Sum_probs=34.9
Q ss_pred cEEEEEeCCHH----HHHHHHHHHhhCCCEEEEEC---------CHHHHHHHhhcCCCCeeEEEE
Q 008626 18 LRVLLLDQDSS----AAAELKFKLEAMDYIVSTFY---------NENEALSAFSDKPENFHVAIV 69 (559)
Q Consensus 18 lrVLIVDDD~~----~~~~L~~~L~~~gy~V~ta~---------~~~eAL~~Lre~~~~pDLVIv 69 (559)
-|+|||-|... ..+.+...|...|+.+..+. +..++.+.+++ ..+|+||-
T Consensus 24 ~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~--~~~D~IIa 86 (375)
T cd08194 24 KRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKE--GGCDVIIA 86 (375)
T ss_pred CeEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHh--cCCCEEEE
Confidence 48999987644 33557777877777766553 35567777777 78999875
No 410
>PLN00142 sucrose synthase
Probab=31.51 E-value=8e+02 Score=29.88 Aligned_cols=75 Identities=17% Similarity=0.141 Sum_probs=51.3
Q ss_pred HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Q 008626 51 NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQ 129 (559)
Q Consensus 51 ~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq 129 (559)
.+....+.. ..|++++= ..-+ .-|+-+++.+. .+|||. |..+. ..+.+..|..+||+.|-+.++|.++|.
T Consensus 657 ~eLyr~iad---aaDVfVlP-S~~E-gFGLvvLEAMA~GlPVVA-TdvGG---~~EIV~dG~tG~LV~P~D~eaLA~aI~ 727 (815)
T PLN00142 657 GELYRYIAD---TKGAFVQP-ALYE-AFGLTVVEAMTCGLPTFA-TCQGG---PAEIIVDGVSGFHIDPYHGDEAANKIA 727 (815)
T ss_pred HHHHHHHHh---hCCEEEeC-Cccc-CCCHHHHHHHHcCCCEEE-cCCCC---HHHHhcCCCcEEEeCCCCHHHHHHHHH
Confidence 344444443 24666542 2334 56888888876 899976 44443 345678899999999999999999887
Q ss_pred HHHHH
Q 008626 130 HVVHK 134 (559)
Q Consensus 130 ~vlrr 134 (559)
.++.+
T Consensus 728 ~lLek 732 (815)
T PLN00142 728 DFFEK 732 (815)
T ss_pred HHHHH
Confidence 76643
No 411
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=31.46 E-value=2.9e+02 Score=29.10 Aligned_cols=59 Identities=5% Similarity=0.027 Sum_probs=32.4
Q ss_pred CCeeEEEEecCCCCCCCHHHHHHHcC--CCcEEEEecCCCHHHHHHHH-HcCCCEEEeCCCCHH
Q 008626 62 ENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNIHCLSTMMKCI-ALGAVEFLRKPLSED 122 (559)
Q Consensus 62 ~~pDLVIvDv~MPd~mdG~eLLe~Ir--diPVImLSa~~d~e~v~kAi-~~GA~DYLvKPis~e 122 (559)
..+|.|++|+..|+ ..++.++... .+|+|+=|.--+.+...+.. ..+.--++.-.++..
T Consensus 67 ~~~d~VvIDFT~P~--~~~~n~~~~~~~gv~~ViGTTG~~~~~~~~l~~~~~i~~l~apNfSiG 128 (275)
T TIGR02130 67 KYPELICIDYTHPS--AVNDNAAFYGKHGIPFVMGTTGGDREALAKLVADAKHPAVIAPNMAKQ 128 (275)
T ss_pred hcCCEEEEECCChH--HHHHHHHHHHHCCCCEEEcCCCCCHHHHHHHHHhcCCCEEEECcccHH
Confidence 34898999999998 3445555442 56666655444434332222 234433444444443
No 412
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=31.40 E-value=1.9e+02 Score=27.92 Aligned_cols=60 Identities=8% Similarity=0.014 Sum_probs=34.9
Q ss_pred HHHHHHHhhCCCEEEEECC---H---HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHc--CCCcEEEEec
Q 008626 31 AELKFKLEAMDYIVSTFYN---E---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA--KDLPTIITSN 96 (559)
Q Consensus 31 ~~L~~~L~~~gy~V~ta~~---~---~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~I--rdiPVImLSa 96 (559)
..++..+++.||.+..+.. . .++++.+.+ ..+|-||+.-. . .+ -++++.+ ..+|+|++..
T Consensus 19 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgiii~~~--~-~~-~~~~~~l~~~~ipvV~~~~ 86 (268)
T cd06298 19 RGIDDIATMYKYNIILSNSDNDKEKELKVLNNLLA--KQVDGIIFMGG--K-IS-EEHREEFKRSPTPVVLAGS 86 (268)
T ss_pred HHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHH--hcCCEEEEeCC--C-Cc-HHHHHHHhcCCCCEEEEcc
Confidence 4455666778998774432 2 244555555 67898887422 1 11 1344444 3799998854
No 413
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=31.39 E-value=2.6e+02 Score=27.96 Aligned_cols=78 Identities=14% Similarity=0.160 Sum_probs=46.0
Q ss_pred HHhhCCC--EEEEECCHHHHHHHhhcCCCCeeEEEEec-CC--CCCCCHHHHHHHcC------CC-cEEEEecCCCHHHH
Q 008626 36 KLEAMDY--IVSTFYNENEALSAFSDKPENFHVAIVEV-TT--SNTDGSFKFLETAK------DL-PTIITSNIHCLSTM 103 (559)
Q Consensus 36 ~L~~~gy--~V~ta~~~~eAL~~Lre~~~~pDLVIvDv-~M--Pd~mdG~eLLe~Ir------di-PVImLSa~~d~e~v 103 (559)
.|++.|+ .++.+.+..+|+..+... .++|=--+ +| -+ .||+++++.+. ++ .-|+..+--+...+
T Consensus 96 ~L~~~gi~v~~T~V~s~~Qa~~Aa~AG---A~yvsP~vgR~~~~g-~dg~~~i~~i~~~~~~~~~~tkil~As~r~~~ei 171 (211)
T cd00956 96 KLSEEGIKTNVTAIFSAAQALLAAKAG---ATYVSPFVGRIDDLG-GDGMELIREIRTIFDNYGFDTKILAASIRNPQHV 171 (211)
T ss_pred HHHHcCCceeeEEecCHHHHHHHHHcC---CCEEEEecChHhhcC-CCHHHHHHHHHHHHHHcCCCceEEecccCCHHHH
Confidence 3444454 344666777777766652 23322111 11 23 67888887763 32 33445566677888
Q ss_pred HHHHHcCCCEEEeC
Q 008626 104 MKCIALGAVEFLRK 117 (559)
Q Consensus 104 ~kAi~~GA~DYLvK 117 (559)
.++..+||+-+-+-
T Consensus 172 ~~a~~~Gad~vTv~ 185 (211)
T cd00956 172 IEAALAGADAITLP 185 (211)
T ss_pred HHHHHcCCCEEEeC
Confidence 88999999876553
No 414
>KOG0485 consensus Transcription factor NKX-5.1/HMX1, contains HOX domain [Transcription]
Probab=31.25 E-value=3e+02 Score=28.38 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=16.3
Q ss_pred CCCHHHHHHhhhhhhhhhcccC
Q 008626 355 GLTRHNVASHLQKYRMHRRHIL 376 (559)
Q Consensus 355 ~lt~~~v~shlQkyr~~~~~~~ 376 (559)
-||-.+||.-.|.-|...||..
T Consensus 142 qLTETQVKIWFQNRRnKwKRq~ 163 (268)
T KOG0485|consen 142 QLTETQVKIWFQNRRNKWKRQY 163 (268)
T ss_pred hhhhhhhhhhhhhhhHHHHHHH
Confidence 3688889998888887665543
No 415
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=31.21 E-value=3.8e+02 Score=27.04 Aligned_cols=76 Identities=12% Similarity=0.201 Sum_probs=49.5
Q ss_pred HHHHHHHhhcCCCCee-EEEEecCCCCCCCH--HHHHHHcC---CCcEEEEecCCCHHHHHHHHHc-CCCEEEe------
Q 008626 50 ENEALSAFSDKPENFH-VAIVEVTTSNTDGS--FKFLETAK---DLPTIITSNIHCLSTMMKCIAL-GAVEFLR------ 116 (559)
Q Consensus 50 ~~eAL~~Lre~~~~pD-LVIvDv~MPd~mdG--~eLLe~Ir---diPVImLSa~~d~e~v~kAi~~-GA~DYLv------ 116 (559)
..+....+.+ ..++ +++.|+.--+.+.| +++++.+. .+|||+--.-.+.+.+.++++. ||++.++
T Consensus 155 ~~~~~~~~~~--~g~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~ 232 (253)
T PRK02083 155 AVEWAKEVEE--LGAGEILLTSMDRDGTKNGYDLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHF 232 (253)
T ss_pred HHHHHHHHHH--cCCCEEEEcCCcCCCCCCCcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHc
Confidence 3455555555 4565 66766543111233 56667664 7999988888899999999975 9998887
Q ss_pred CCCCHHHHHHH
Q 008626 117 KPLSEDKLRNL 127 (559)
Q Consensus 117 KPis~eeL~~i 127 (559)
.-++.++++..
T Consensus 233 ~~~~~~~~~~~ 243 (253)
T PRK02083 233 GEITIGELKAY 243 (253)
T ss_pred CCCCHHHHHHH
Confidence 34455555443
No 416
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=31.15 E-value=1e+02 Score=25.73 Aligned_cols=65 Identities=18% Similarity=0.294 Sum_probs=39.9
Q ss_pred HHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Q 008626 50 ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLW 128 (559)
Q Consensus 50 ~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iI 128 (559)
+.+.|+.+... ..+.+..+|+. +.-++.++-. ++|||.+........ ...+-.+++.++|.+.+
T Consensus 16 a~~~L~~~~~~-~~~~l~~vDI~-----~d~~l~~~Y~~~IPVl~~~~~~~~~~---------~~~~~~~~d~~~L~~~L 80 (81)
T PF05768_consen 16 AKEILEEVAAE-FPFELEEVDID-----EDPELFEKYGYRIPVLHIDGIRQFKE---------QEELKWRFDEEQLRAWL 80 (81)
T ss_dssp HHHHHHHCCTT-STCEEEEEETT-----TTHHHHHHSCTSTSEEEETT-GGGCT---------SEEEESSB-HHHHHHHH
T ss_pred HHHHHHHHHhh-cCceEEEEECC-----CCHHHHHHhcCCCCEEEEcCcccccc---------cceeCCCCCHHHHHHHh
Confidence 34444444332 56899999996 2334555555 899998876322111 45677899999988876
Q ss_pred H
Q 008626 129 Q 129 (559)
Q Consensus 129 q 129 (559)
+
T Consensus 81 ~ 81 (81)
T PF05768_consen 81 E 81 (81)
T ss_dssp H
T ss_pred C
Confidence 4
No 417
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=31.10 E-value=1.4e+02 Score=21.01 Aligned_cols=44 Identities=18% Similarity=0.317 Sum_probs=32.1
Q ss_pred eecCHHHHHHHHHHHHHhCCCCCCChHHHhhcCCCCCCHHHHHHhhhh
Q 008626 320 VDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQK 367 (559)
Q Consensus 320 ~~Wt~~lh~~Fv~av~~lg~~~a~pk~il~~m~v~~lt~~~v~shlQk 367 (559)
-.||++=...|+.++.++|.. .=+.|-+.|+ +=|...|+.+...
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~--~w~~Ia~~~~--~rt~~~~~~~~~~ 45 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKN--NWEKIAKELP--GRTAEQCRERWNN 45 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcC--CHHHHHHHcC--CCCHHHHHHHHHH
Confidence 369999999999999999941 1355666654 6777777766443
No 418
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.01 E-value=4e+02 Score=28.20 Aligned_cols=99 Identities=11% Similarity=0.087 Sum_probs=58.5
Q ss_pred cEEEEE--eCCHHH---HHHHHHHHhhCCCEEEEECCHHH---HHH-------H--hhcCCCCeeEEEEecCCCCCCCHH
Q 008626 18 LRVLLL--DQDSSA---AAELKFKLEAMDYIVSTFYNENE---ALS-------A--FSDKPENFHVAIVEVTTSNTDGSF 80 (559)
Q Consensus 18 lrVLIV--DDD~~~---~~~L~~~L~~~gy~V~ta~~~~e---AL~-------~--Lre~~~~pDLVIvDv~MPd~mdG~ 80 (559)
.+|+|+ -+.+.. ...|...|.+.|++|........ ++. . ..+....+|+||+ + + +||.
T Consensus 6 ~~i~ii~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~---l-G-GDGT 80 (296)
T PRK04539 6 HNIGIVTRPNTPDIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELGQYCDLVAV---L-G-GDGT 80 (296)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecccccccchhccccccccccchhhcCcCCCEEEE---E-C-CcHH
Confidence 457777 233333 44556666677888875432111 110 0 0111124788877 2 3 5773
Q ss_pred --HHHHHcC--CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Q 008626 81 --KFLETAK--DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHKA 135 (559)
Q Consensus 81 --eLLe~Ir--diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr~ 135 (559)
..++.+. ++||+-+. .|=.+||. .++.+++...+..+++..
T Consensus 81 ~L~aa~~~~~~~~PilGIN-------------~G~lGFL~-~~~~~~~~~~l~~i~~g~ 125 (296)
T PRK04539 81 FLSVAREIAPRAVPIIGIN-------------QGHLGFLT-QIPREYMTDKLLPVLEGK 125 (296)
T ss_pred HHHHHHHhcccCCCEEEEe-------------cCCCeEee-ccCHHHHHHHHHHHHcCC
Confidence 3344443 78988764 46688998 489999999998888654
No 419
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=30.92 E-value=1.5e+02 Score=29.15 Aligned_cols=65 Identities=18% Similarity=0.226 Sum_probs=39.7
Q ss_pred HHHHHHHHHhhCCCEEEEECC---HH---HHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC--CCcEEEEecC
Q 008626 29 AAAELKFKLEAMDYIVSTFYN---EN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (559)
Q Consensus 29 ~~~~L~~~L~~~gy~V~ta~~---~~---eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir--diPVImLSa~ 97 (559)
+...+.+.++..||++..+.. .+ ++++.+.. ..+|-||+.-.-.+ ...+.++.+. .+|||++-..
T Consensus 17 ~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgiIi~~~~~~--~~~~~i~~~~~~~iPvV~~~~~ 89 (273)
T cd06309 17 ETKSIKDAAEKRGFDLKFADAQQKQENQISAIRSFIA--QGVDVIILAPVVET--GWDPVLKEAKAAGIPVILVDRG 89 (273)
T ss_pred HHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHH--cCCCEEEEcCCccc--cchHHHHHHHHCCCCEEEEecC
Confidence 445667777788999886643 22 34555555 57898877432211 1234555553 7999988653
No 420
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=30.85 E-value=1.4e+02 Score=31.42 Aligned_cols=92 Identities=15% Similarity=0.109 Sum_probs=60.0
Q ss_pred EEEEeCCHHHHH---HHHHHH----hhCC--CEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC---
Q 008626 20 VLLLDQDSSAAA---ELKFKL----EAMD--YIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--- 87 (559)
Q Consensus 20 VLIVDDD~~~~~---~L~~~L----~~~g--y~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir--- 87 (559)
|||-|.+-.... .+...+ +..+ ...+.+.+.++|.+.+.. .+|+|++|-.-|+ +--++.+.++
T Consensus 160 vLikdNHi~~~g~~~~i~~av~~~r~~~~~~kIeVEv~tleqa~ea~~a---gaDiI~LDn~~~e--~l~~av~~~~~~~ 234 (284)
T PRK06096 160 ILLFANHRHFLHDPQDWSGAINQLRRHAPEKKIVVEADTPKEAIAALRA---QPDVLQLDKFSPQ--QATEIAQIAPSLA 234 (284)
T ss_pred hhhHHHHHHHhCCcccHHHHHHHHHHhCCCCCEEEECCCHHHHHHHHHc---CCCEEEECCCCHH--HHHHHHHHhhccC
Confidence 566666654433 233333 2222 244578899999999877 5899999954444 3344444443
Q ss_pred CCcEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008626 88 DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (559)
Q Consensus 88 diPVImLSa~~d~e~v~kAi~~GA~DYLv 116 (559)
.-.+|-.|+.-+.+.+.+....|++-+.+
T Consensus 235 ~~~~leaSGGI~~~ni~~yA~tGvD~Is~ 263 (284)
T PRK06096 235 PHCTLSLAGGINLNTLKNYADCGIRLFIT 263 (284)
T ss_pred CCeEEEEECCCCHHHHHHHHhcCCCEEEE
Confidence 34467778888999999999999876543
No 421
>PRK06182 short chain dehydrogenase; Validated
Probab=30.82 E-value=2.1e+02 Score=28.43 Aligned_cols=76 Identities=13% Similarity=0.138 Sum_probs=49.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHc----CCCcEE
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA----KDLPTI 92 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~I----rdiPVI 92 (559)
+..|||.....-+-..+...|.+.|++|+.+....+.++.+.. .....+.+|+.-++ +--++++.+ ..+-+|
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~--~~~~~~~~Dv~~~~--~~~~~~~~~~~~~~~id~l 78 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLAS--LGVHPLSLDVTDEA--SIKAAVDTIIAEEGRIDVL 78 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh--CCCeEEEeeCCCHH--HHHHHHHHHHHhcCCCCEE
Confidence 4578999988888889999998889999865544555665554 34677778875433 122334433 245555
Q ss_pred EEec
Q 008626 93 ITSN 96 (559)
Q Consensus 93 mLSa 96 (559)
+..+
T Consensus 79 i~~a 82 (273)
T PRK06182 79 VNNA 82 (273)
T ss_pred EECC
Confidence 5443
No 422
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=30.81 E-value=2.5e+02 Score=28.56 Aligned_cols=79 Identities=18% Similarity=0.151 Sum_probs=47.5
Q ss_pred HHhhCCCE--EEEECCHHHHHHHhhcCCCCeeEEEEec-CCCCC-CCHHHHHHHcC-------CCcEEEEecCCCHHHHH
Q 008626 36 KLEAMDYI--VSTFYNENEALSAFSDKPENFHVAIVEV-TTSNT-DGSFKFLETAK-------DLPTIITSNIHCLSTMM 104 (559)
Q Consensus 36 ~L~~~gy~--V~ta~~~~eAL~~Lre~~~~pDLVIvDv-~MPd~-mdG~eLLe~Ir-------diPVImLSa~~d~e~v~ 104 (559)
.|...|+. ++.+.+..+|+...... .+.|=-=+ +|.+. .||.++++.+. .-.-|+.++-.+...+.
T Consensus 100 ~L~~~Gi~vn~T~ifs~~Qa~~Aa~aG---a~yvsPyvgRi~d~g~D~~~~i~~i~~~~~~~~~~tkILaAS~r~~~~v~ 176 (222)
T PRK12656 100 TLKAEGYHITATAIYTVFQGLLAIEAG---ADYLAPYYNRMENLNIDSNAVIGQLAEAIDRENSDSKILAASFKNVAQVN 176 (222)
T ss_pred HHHHCCCceEEeeeCCHHHHHHHHHCC---CCEEecccchhhhcCCCHHHHHHHHHHHHHhcCCCCEEEEEecCCHHHHH
Confidence 44555653 45677777777777652 23322211 22221 58888877653 13445566667888899
Q ss_pred HHHHcCCCEEEeC
Q 008626 105 KCIALGAVEFLRK 117 (559)
Q Consensus 105 kAi~~GA~DYLvK 117 (559)
++...||+-.-+-
T Consensus 177 ~a~~~G~d~vTvp 189 (222)
T PRK12656 177 KAFALGAQAVTAG 189 (222)
T ss_pred HHHHcCCCEEecC
Confidence 9999998766543
No 423
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=30.78 E-value=4.6e+02 Score=31.12 Aligned_cols=106 Identities=6% Similarity=0.016 Sum_probs=63.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCC--EEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CCcEEE
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAMDY--IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTII 93 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy--~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-diPVIm 93 (559)
.++++||.+-+ .+..|+++....|. .|....-..+...++.. .|++++=.. .+ .-|..+++.+. .+|||.
T Consensus 548 ~~~LvIvG~G~-~~~~L~~l~~~lgL~~~V~flG~~~dv~~ll~a----aDv~VlpS~-~E-gfp~vlLEAMA~G~PVVa 620 (694)
T PRK15179 548 KVRFIMVGGGP-LLESVREFAQRLGMGERILFTGLSRRVGYWLTQ----FNAFLLLSR-FE-GLPNVLIEAQFSGVPVVT 620 (694)
T ss_pred CeEEEEEccCc-chHHHHHHHHHcCCCCcEEEcCCcchHHHHHHh----cCEEEeccc-cc-cchHHHHHHHHcCCeEEE
Confidence 35677777643 34455666665543 23333322333344444 477666432 34 45777888775 899986
Q ss_pred EecCCCHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHHHHH
Q 008626 94 TSNIHCLSTMMKCIALGAVEFLRKPLS--EDKLRNLWQHVVH 133 (559)
Q Consensus 94 LSa~~d~e~v~kAi~~GA~DYLvKPis--~eeL~~iIq~vlr 133 (559)
... .. ..+.+..|.++||+.|-+ .++|...+..++.
T Consensus 621 t~~-gG---~~EiV~dg~~GlLv~~~d~~~~~La~aL~~ll~ 658 (694)
T PRK15179 621 TLA-GG---AGEAVQEGVTGLTLPADTVTAPDVAEALARIHD 658 (694)
T ss_pred ECC-CC---hHHHccCCCCEEEeCCCCCChHHHHHHHHHHHh
Confidence 433 32 345578899999998665 4577777766664
No 424
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=30.69 E-value=2.2e+02 Score=27.81 Aligned_cols=63 Identities=10% Similarity=-0.005 Sum_probs=37.0
Q ss_pred HHHHHHHHHhhCCCEEEEECC----HHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC--CCcEEEEecC
Q 008626 29 AAAELKFKLEAMDYIVSTFYN----ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (559)
Q Consensus 29 ~~~~L~~~L~~~gy~V~ta~~----~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir--diPVImLSa~ 97 (559)
+.+.+.+.++..||.+..+.. ...+.+.+.. ..+|-||+.-...+ -..++.+. .+|||++...
T Consensus 28 ~~~gi~~~~~~~g~~~~v~~~~~~~~~~~~~~l~~--~~~dgiii~~~~~~----~~~~~~~~~~~ipvV~~~~~ 96 (275)
T cd06295 28 LLGGIADALAERGYDLLLSFVSSPDRDWLARYLAS--GRADGVILIGQHDQ----DPLPERLAETGLPFVVWGRP 96 (275)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCchhHHHHHHHHHh--CCCCEEEEeCCCCC----hHHHHHHHhCCCCEEEECCc
Confidence 345577777788998774432 2234555555 57897766322112 13345553 7999988653
No 425
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=30.67 E-value=2.5e+02 Score=27.15 Aligned_cols=63 Identities=21% Similarity=0.228 Sum_probs=39.0
Q ss_pred HHHHHHHHHhhCCCEEEEECC---HH---HHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC--CCcEEEEec
Q 008626 29 AAAELKFKLEAMDYIVSTFYN---EN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (559)
Q Consensus 29 ~~~~L~~~L~~~gy~V~ta~~---~~---eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir--diPVImLSa 96 (559)
....++..+++.||.+..+.+ .+ +.++.+.+ ..+|.||+-...+. ..+.++.+. .+|+|++-.
T Consensus 17 ~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~--~~vdgiii~~~~~~---~~~~~~~~~~~~ipvV~~~~ 87 (268)
T cd06289 17 LAAGLEEVLEEAGYTVFLANSGEDVERQEQLLSTMLE--HGVAGIILCPAAGT---SPDLLKRLAESGIPVVLVAR 87 (268)
T ss_pred HHHHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHH--cCCCEEEEeCCCCc---cHHHHHHHHhcCCCEEEEec
Confidence 445667777788999875542 22 34455555 57898877643322 334555553 799998854
No 426
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=30.64 E-value=2.2e+02 Score=27.66 Aligned_cols=62 Identities=15% Similarity=0.188 Sum_probs=37.0
Q ss_pred HHHHHHHHHhhCCCEEEEEC---CH---HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC--CCcEEEEec
Q 008626 29 AAAELKFKLEAMDYIVSTFY---NE---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (559)
Q Consensus 29 ~~~~L~~~L~~~gy~V~ta~---~~---~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir--diPVImLSa 96 (559)
+...+.+.++..||.+..+. +. .++++.+.. ..+|-||+.-.... . +.++.+. .+|||++-.
T Consensus 17 ~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~--~~~dgiii~~~~~~---~-~~~~~~~~~~iPvv~~~~ 86 (265)
T cd06285 17 MYEGIEEAAAERGYSTFVANTGDNPDAQRRAIEMLLD--RRVDGLILGDARSD---D-HFLDELTRRGVPFVLVLR 86 (265)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHH--cCCCEEEEecCCCC---h-HHHHHHHHcCCCEEEEcc
Confidence 34556677777899877433 22 245666666 67997777532222 2 2344443 789988854
No 427
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=30.61 E-value=2.2e+02 Score=28.01 Aligned_cols=61 Identities=10% Similarity=0.048 Sum_probs=35.9
Q ss_pred HHHHHHHHhhCCCEEEEECC-----HHHHHH-HhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC--CCcEEEEec
Q 008626 30 AAELKFKLEAMDYIVSTFYN-----ENEALS-AFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (559)
Q Consensus 30 ~~~L~~~L~~~gy~V~ta~~-----~~eAL~-~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir--diPVImLSa 96 (559)
...+...+.+.||.+..+.. ..+++. .+.. ..+|-||+.-...+ . +.++.+. .+|+|++-.
T Consensus 18 ~~~i~~~~~~~gy~~~~~~~~~~~~~~~~~~~~l~~--~~vdgvi~~~~~~~-~---~~~~~l~~~~iPvv~~~~ 86 (269)
T cd06297 18 LEGIEGALLEQRYDLALFPLLSLARLKRYLESTTLA--YLTDGLLLASYDLT-E---RLAERRLPTERPVVLVDA 86 (269)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCcHHHHHHHHHHHHh--cCCCEEEEecCccC-h---HHHHHHhhcCCCEEEEcc
Confidence 34566666778999875432 223443 3555 67997777543333 2 3444443 789998854
No 428
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=30.57 E-value=2.6e+02 Score=27.78 Aligned_cols=90 Identities=9% Similarity=0.107 Sum_probs=48.7
Q ss_pred HHHhhCCC-EEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CC--cEE-EEecCCCHHHHHHHHHc
Q 008626 35 FKLEAMDY-IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DL--PTI-ITSNIHCLSTMMKCIAL 109 (559)
Q Consensus 35 ~~L~~~gy-~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-di--PVI-mLSa~~d~e~v~kAi~~ 109 (559)
..|...+. -|+...+.++++..++.- -.-.+=++.+.+-. -++++.++.++ .. +++ =.-.--+.+.+..++.+
T Consensus 5 ~~l~~~~~~~v~r~~~~~~~~~~~~a~-~~gGi~~iEvt~~~-~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~a 82 (206)
T PRK09140 5 QPFTKLPLIAILRGITPDEALAHVGAL-IEAGFRAIEIPLNS-PDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADA 82 (206)
T ss_pred hHHHhCCEEEEEeCCCHHHHHHHHHHH-HHCCCCEEEEeCCC-ccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHc
Confidence 34444443 344555666666655430 01123355555555 56777777764 22 222 12223466788899999
Q ss_pred CCCEEEeCCCCHHHHHHH
Q 008626 110 GAVEFLRKPLSEDKLRNL 127 (559)
Q Consensus 110 GA~DYLvKPis~eeL~~i 127 (559)
||+ |++-|....++...
T Consensus 83 GA~-fivsp~~~~~v~~~ 99 (206)
T PRK09140 83 GGR-LIVTPNTDPEVIRR 99 (206)
T ss_pred CCC-EEECCCCCHHHHHH
Confidence 996 45557666565553
No 429
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=30.52 E-value=1.4e+02 Score=31.00 Aligned_cols=55 Identities=11% Similarity=0.117 Sum_probs=37.8
Q ss_pred CCcEEEEE--------eCCHHHHHHHHHHHhhCCCEEEEEC-CHHHHHHHhhcCCCCeeEEEEecC
Q 008626 16 KGLRVLLL--------DQDSSAAAELKFKLEAMDYIVSTFY-NENEALSAFSDKPENFHVAIVEVT 72 (559)
Q Consensus 16 ~glrVLIV--------DDD~~~~~~L~~~L~~~gy~V~ta~-~~~eAL~~Lre~~~~pDLVIvDv~ 72 (559)
.+++|.|+ +........+.+.|.+.||+|+.+. +..+.+..|.. ..+|+|+.-++
T Consensus 2 ~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~~~~~~~~~l~~--~~~d~vf~~lh 65 (296)
T PRK14569 2 KNEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDASGKELVAKLLE--LKPDKCFVALH 65 (296)
T ss_pred CCcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcCCchhHHHHhhc--cCCCEEEEeCC
Confidence 35677777 2223445567777788899988665 44566777776 57999998775
No 430
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=30.47 E-value=2.5e+02 Score=27.36 Aligned_cols=64 Identities=9% Similarity=0.054 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhhCCCEEEEECC---H---HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHc-CCCcEEEEec
Q 008626 28 SAAAELKFKLEAMDYIVSTFYN---E---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA-KDLPTIITSN 96 (559)
Q Consensus 28 ~~~~~L~~~L~~~gy~V~ta~~---~---~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~I-rdiPVImLSa 96 (559)
.+...+...+++.||++..+.+ . .+.++.+.+ ..+|-||+...... .+. +.+.+ ..+|||++-.
T Consensus 16 ~~~~gi~~~~~~~gy~v~~~~~~~~~~~~~~~i~~~~~--~~~dgiii~~~~~~-~~~--~~~~~~~~~pvV~i~~ 86 (269)
T cd06293 16 ELADAVEEEADARGLSLVLCATRNRPERELTYLRWLDT--NHVDGLIFVTNRPD-DGA--LAKLINSYGNIVLVDE 86 (269)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHH--CCCCEEEEeCCCCC-HHH--HHHHHhcCCCEEEECC
Confidence 3556677777888999875532 2 345566666 67998888643323 222 22222 3789998854
No 431
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=30.32 E-value=2.1e+02 Score=27.59 Aligned_cols=62 Identities=6% Similarity=0.179 Sum_probs=37.2
Q ss_pred HHHHHHHhhCCCEEEEECC---HH---HHHHHhhcCCCCeeEEEEecCCCCCCC-HHHHHHHcC--CCcEEEEecC
Q 008626 31 AELKFKLEAMDYIVSTFYN---EN---EALSAFSDKPENFHVAIVEVTTSNTDG-SFKFLETAK--DLPTIITSNI 97 (559)
Q Consensus 31 ~~L~~~L~~~gy~V~ta~~---~~---eAL~~Lre~~~~pDLVIvDv~MPd~md-G~eLLe~Ir--diPVImLSa~ 97 (559)
..++..++..||.+..+.+ .+ ++++.+.. ..+|-||+-- .+ .+ ..++++.++ .+|+|++...
T Consensus 19 ~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~--~~~dgii~~~--~~-~~~~~~~l~~l~~~~ipvv~~~~~ 89 (268)
T cd06323 19 DGAQKEAKELGYELTVLDAQNDAAKQLNDIEDLIT--RGVDAIIINP--TD-SDAVVPAVKAANEAGIPVFTIDRE 89 (268)
T ss_pred HHHHHHHHHcCceEEecCCCCCHHHHHHHHHHHHH--cCCCEEEEcC--CC-hHHHHHHHHHHHHCCCcEEEEccC
Confidence 4556666778999886543 33 44555555 5689877721 12 11 235566553 7899988654
No 432
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=30.31 E-value=2.2e+02 Score=28.46 Aligned_cols=69 Identities=13% Similarity=0.213 Sum_probs=49.9
Q ss_pred ECCHHHHHHHhhcCCCCee-EEEEecCCCCCCC--HHHHHHHcC---CCcEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 008626 47 FYNENEALSAFSDKPENFH-VAIVEVTTSNTDG--SFKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLRK 117 (559)
Q Consensus 47 a~~~~eAL~~Lre~~~~pD-LVIvDv~MPd~md--G~eLLe~Ir---diPVImLSa~~d~e~v~kAi~~GA~DYLvK 117 (559)
..+..+..+.+.+ ..+| |+++|+.-..... -+++++.++ .+||++--.-.+.+.+.+++..||+..++=
T Consensus 26 ~~d~~~~a~~~~~--~G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig 100 (243)
T cd04731 26 AGDPVELAKRYNE--QGADELVFLDITASSEGRETMLDVVERVAEEVFIPLTVGGGIRSLEDARRLLRAGADKVSIN 100 (243)
T ss_pred CCCHHHHHHHHHH--CCCCEEEEEcCCcccccCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCceEEEC
Confidence 3377777777777 4555 8888887432122 256677775 689998888889999999999998876653
No 433
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=30.25 E-value=3e+02 Score=24.34 Aligned_cols=27 Identities=15% Similarity=0.078 Sum_probs=16.5
Q ss_pred EEeCCHHHHHHHHHHHhhCCCEEEEEC
Q 008626 22 LLDQDSSAAAELKFKLEAMDYIVSTFY 48 (559)
Q Consensus 22 IVDDD~~~~~~L~~~L~~~gy~V~ta~ 48 (559)
+-|.+......+...|...||.+....
T Consensus 6 v~d~~K~~~~~~a~~l~~~G~~i~AT~ 32 (112)
T cd00532 6 VSDHVKAMLVDLAPKLSSDGFPLFATG 32 (112)
T ss_pred EEcccHHHHHHHHHHHHHCCCEEEECc
Confidence 334455555666677777788776443
No 434
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=30.23 E-value=3e+02 Score=29.90 Aligned_cols=83 Identities=19% Similarity=0.171 Sum_probs=46.2
Q ss_pred HHHHHHhhCCCEEEE----ECCHHH---HHHHhhcCCCCeeEEEEe-c---------CCCCCCCHHHHHHHcCCCcEEEE
Q 008626 32 ELKFKLEAMDYIVST----FYNENE---ALSAFSDKPENFHVAIVE-V---------TTSNTDGSFKFLETAKDLPTIIT 94 (559)
Q Consensus 32 ~L~~~L~~~gy~V~t----a~~~~e---AL~~Lre~~~~pDLVIvD-v---------~MPd~mdG~eLLe~IrdiPVImL 94 (559)
.|...+.+.|.-|.. +.+.+| |++.+.+. ...+|+|+. . ...+ +..+..++...++||++=
T Consensus 216 ~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~-Gn~~i~L~erg~s~yp~~~~~~ld-l~~i~~lk~~~~~PV~~d 293 (360)
T PRK12595 216 ELLKAAGRVNKPVLLKRGLSATIEEFIYAAEYIMSQ-GNGQIILCERGIRTYEKATRNTLD-ISAVPILKQETHLPVMVD 293 (360)
T ss_pred HHHHHHHccCCcEEEeCCCCCCHHHHHHHHHHHHHC-CCCCEEEECCccCCCCCCCCCCcC-HHHHHHHHHHhCCCEEEe
Confidence 344444455555542 234444 55555543 456899996 2 1123 345555555558998872
Q ss_pred ecCCC----H--HHHHHHHHcCCCEEEe
Q 008626 95 SNIHC----L--STMMKCIALGAVEFLR 116 (559)
Q Consensus 95 Sa~~d----~--e~v~kAi~~GA~DYLv 116 (559)
+++.. . .....|+..||++.++
T Consensus 294 ~~Hs~G~r~~~~~~a~aAva~GAdg~~i 321 (360)
T PRK12595 294 VTHSTGRRDLLLPTAKAALAIGADGVMA 321 (360)
T ss_pred CCCCCcchhhHHHHHHHHHHcCCCeEEE
Confidence 44432 2 2556789999985543
No 435
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=30.09 E-value=2.6e+02 Score=30.82 Aligned_cols=105 Identities=14% Similarity=0.123 Sum_probs=63.7
Q ss_pred eCCHHHHHHHHHHHhhCCCE----EEEE-----------------------CCHHHHHHHhhcCCCCeeEEEEecCCCCC
Q 008626 24 DQDSSAAAELKFKLEAMDYI----VSTF-----------------------YNENEALSAFSDKPENFHVAIVEVTTSNT 76 (559)
Q Consensus 24 DDD~~~~~~L~~~L~~~gy~----V~ta-----------------------~~~~eAL~~Lre~~~~pDLVIvDv~MPd~ 76 (559)
++|...++.+.+.++..||. |..+ -+.++|+++++..-..++++.+.==++.
T Consensus 210 ~~d~~~l~~i~eAi~~~g~~~G~dv~i~lD~aas~~~~~~~y~~~~~~~~~~t~~eai~~~~~l~e~~~i~~iEdPl~~- 288 (408)
T cd03313 210 SSNEEALDLLVEAIEKAGYEPGKKIAIALDVAASEFYDEGKYVYDSDEGKKLTSEELIDYYKELVKKYPIVSIEDPFDE- 288 (408)
T ss_pred CChHHHHHHHHHHHHHhcCCCCCeEEEEEehhhhhhcccCcceeccCCCcccCHHHHHHHHHHHHHhCCcEEEEeCCCC-
Confidence 56778788889989877653 2221 2447887766652134778777766655
Q ss_pred CC--HHHHHHHcCCCcEEEEecC---CCHHHHHHHHHcCCC-EEEeCCCCHHHHHHHHH
Q 008626 77 DG--SFKFLETAKDLPTIITSNI---HCLSTMMKCIALGAV-EFLRKPLSEDKLRNLWQ 129 (559)
Q Consensus 77 md--G~eLLe~IrdiPVImLSa~---~d~e~v~kAi~~GA~-DYLvKPis~eeL~~iIq 129 (559)
.| |+..|..--..++.++..+ .+...+.++++.|++ .+++|+....-|...++
T Consensus 289 ~D~eg~~~L~~~~g~~ipi~gdE~~~~~~~~~~~~i~~~a~d~v~ik~~~iGGite~~~ 347 (408)
T cd03313 289 DDWEGWAKLTAKLGDKIQIVGDDLFVTNPERLKKGIEKKAANALLIKVNQIGTLTETIE 347 (408)
T ss_pred cCHHHHHHHHHhcCCCCeEEcCCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHH
Confidence 33 5444333221144444444 257788889998875 55668887655555444
No 436
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=30.04 E-value=3.2e+02 Score=25.35 Aligned_cols=35 Identities=14% Similarity=0.166 Sum_probs=23.8
Q ss_pred HHHHHcC--CCcEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008626 81 KFLETAK--DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (559)
Q Consensus 81 eLLe~Ir--diPVImLSa~~d~e~v~kAi~~GA~DYLv 116 (559)
++++.++ .+++.+-|.+ +.+.+..+++.|+++.++
T Consensus 151 ~~i~~~~~~g~~v~~wtvn-~~~~~~~~~~~GVdgI~T 187 (189)
T cd08556 151 ELVRAAHAAGLKVYVWTVN-DPEDARRLLALGVDGIIT 187 (189)
T ss_pred HHHHHHHHcCCEEEEEcCC-CHHHHHHHHHCCCCEEec
Confidence 3344443 6788777764 567778888888887764
No 437
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=29.98 E-value=2.2e+02 Score=27.68 Aligned_cols=62 Identities=15% Similarity=0.164 Sum_probs=36.2
Q ss_pred HHHHHHHHhhCCCEEEEEC---CH---HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC--CCcEEEEe
Q 008626 30 AAELKFKLEAMDYIVSTFY---NE---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITS 95 (559)
Q Consensus 30 ~~~L~~~L~~~gy~V~ta~---~~---~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir--diPVImLS 95 (559)
...++..++..||++..+. +. .++++.+.. ..+|-||+--.-+. ...+.++.++ .+|||++-
T Consensus 18 ~~~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~--~~vdgiii~~~~~~--~~~~~~~~~~~~~ipvV~~~ 87 (267)
T cd06322 18 ANAMKEEAKKQKVNLIVSIANQDLNKQLSDVEDFIT--KKVDAIVLSPVDSK--GIRAAIAKAKKAGIPVITVD 87 (267)
T ss_pred HHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHHHHH--cCCCEEEEcCCChh--hhHHHHHHHHHCCCCEEEEc
Confidence 3556666777899987543 22 245555555 67998887322111 1234455543 68999884
No 438
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=29.89 E-value=3.7e+02 Score=27.29 Aligned_cols=61 Identities=13% Similarity=0.022 Sum_probs=39.2
Q ss_pred HHHHHHHhhCCCEEEE-------ECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcEEEEec
Q 008626 31 AELKFKLEAMDYIVST-------FYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPTIITSN 96 (559)
Q Consensus 31 ~~L~~~L~~~gy~V~t-------a~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPVImLSa 96 (559)
..++..+++.|.+|+. ..+....+..|+. ..+|+|++-.. . .++..+++.++ ..++|..+.
T Consensus 155 ~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~--~~pd~v~~~~~--~-~~~~~~~~~~~~~G~~~~~~~~~~ 226 (312)
T cd06346 155 DAFTKAFEALGGTVTNVVAHEEGKSSYSSEVAAAAA--GGPDALVVIGY--P-ETGSGILRSAYEQGLFDKFLLTDG 226 (312)
T ss_pred HHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHh--cCCCEEEEecc--c-chHHHHHHHHHHcCCCCceEeecc
Confidence 4456666777887652 2366677777777 67999887654 2 35777777664 455655444
No 439
>PRK05693 short chain dehydrogenase; Provisional
Probab=29.85 E-value=2.5e+02 Score=27.93 Aligned_cols=75 Identities=19% Similarity=0.212 Sum_probs=48.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHc----CCCcEEE
Q 008626 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA----KDLPTII 93 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~I----rdiPVIm 93 (559)
.+|||.....-+-..+...|.+.|+.|+.+....+.++.+.. .....+-+|+.-++ +.-++++.+ ..+-+|+
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~--~~~~~~~~Dl~~~~--~~~~~~~~~~~~~~~id~vi 77 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAA--AGFTAVQLDVNDGA--ALARLAEELEAEHGGLDVLI 77 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH--CCCeEEEeeCCCHH--HHHHHHHHHHHhcCCCCEEE
Confidence 368888888888888888888889998855544445555555 34566667775433 223344444 2466666
Q ss_pred Eec
Q 008626 94 TSN 96 (559)
Q Consensus 94 LSa 96 (559)
..+
T Consensus 78 ~~a 80 (274)
T PRK05693 78 NNA 80 (274)
T ss_pred ECC
Confidence 544
No 440
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=29.73 E-value=4.3e+02 Score=26.75 Aligned_cols=65 Identities=11% Similarity=0.117 Sum_probs=42.9
Q ss_pred HHHHHHHhhcCCCCeeE-EEEecCCCCCCCH--HHHHHHcC---CCcEEEEecCCCHHHHHHHHHcC-CCEEEe
Q 008626 50 ENEALSAFSDKPENFHV-AIVEVTTSNTDGS--FKFLETAK---DLPTIITSNIHCLSTMMKCIALG-AVEFLR 116 (559)
Q Consensus 50 ~~eAL~~Lre~~~~pDL-VIvDv~MPd~mdG--~eLLe~Ir---diPVImLSa~~d~e~v~kAi~~G-A~DYLv 116 (559)
..+..+.+.+ ..+|. ++.|+.--+.+.| +++++.++ .+|||+.-.-.+.+.+.+++..| |+..++
T Consensus 157 ~~~~~~~l~~--~G~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~ 228 (254)
T TIGR00735 157 AVEWAKEVEK--LGAGEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALA 228 (254)
T ss_pred HHHHHHHHHH--cCCCEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeE
Confidence 3455555555 55674 4545432111223 56777665 79999988899999999999988 887554
No 441
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=29.71 E-value=1e+02 Score=27.78 Aligned_cols=74 Identities=15% Similarity=0.259 Sum_probs=39.1
Q ss_pred cEEEEEeCCHHHHHHHHHHH-hhCCCEEEEE-CCHH----------------------HHHHHhhcCCCCeeEEEEecCC
Q 008626 18 LRVLLLDQDSSAAAELKFKL-EAMDYIVSTF-YNEN----------------------EALSAFSDKPENFHVAIVEVTT 73 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L-~~~gy~V~ta-~~~~----------------------eAL~~Lre~~~~pDLVIvDv~M 73 (559)
|||.|+.-.=-.-+.+.+.+ +..++++..+ .... +-++.+.+ . +| |++|+..
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~--~-~D-VvIDfT~ 76 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLE--E-AD-VVIDFTN 76 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTT--H--S-EEEEES-
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcc--c-CC-EEEEcCC
Confidence 57888887444444454444 4468887733 2222 12333333 2 67 6788987
Q ss_pred CCCCCHHHHHHHcC--CCcEEEEecC
Q 008626 74 SNTDGSFKFLETAK--DLPTIITSNI 97 (559)
Q Consensus 74 Pd~mdG~eLLe~Ir--diPVImLSa~ 97 (559)
|+ ...+.++.+. .+|+|+=|.-
T Consensus 77 p~--~~~~~~~~~~~~g~~~ViGTTG 100 (124)
T PF01113_consen 77 PD--AVYDNLEYALKHGVPLVIGTTG 100 (124)
T ss_dssp HH--HHHHHHHHHHHHT-EEEEE-SS
T ss_pred hH--HhHHHHHHHHhCCCCEEEECCC
Confidence 77 3455555543 7888875543
No 442
>PLN02846 digalactosyldiacylglycerol synthase
Probab=29.69 E-value=3.2e+02 Score=30.80 Aligned_cols=103 Identities=14% Similarity=0.054 Sum_probs=63.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CCcEEEEe
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTIITS 95 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-diPVImLS 95 (559)
..+++||.|-+.. ..|++.....+..+..+......-+.+.. +|+.+. -...+ .-|.-+++.+. .+|||..-
T Consensus 259 ~~~l~ivGdGp~~-~~L~~~a~~l~l~~~vf~G~~~~~~~~~~----~DvFv~-pS~~E-t~g~v~lEAmA~G~PVVa~~ 331 (462)
T PLN02846 259 GLEVDLYGSGEDS-DEVKAAAEKLELDVRVYPGRDHADPLFHD----YKVFLN-PSTTD-VVCTTTAEALAMGKIVVCAN 331 (462)
T ss_pred CeEEEEECCCccH-HHHHHHHHhcCCcEEEECCCCCHHHHHHh----CCEEEE-CCCcc-cchHHHHHHHHcCCcEEEec
Confidence 3577777777653 45666666666544333322222233333 476555 33445 56888888875 89998765
Q ss_pred cCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008626 96 NIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 96 a~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
... . +.+..|.+.|+. -+.+++...+..++.
T Consensus 332 ~~~-~----~~v~~~~ng~~~--~~~~~~a~ai~~~l~ 362 (462)
T PLN02846 332 HPS-N----EFFKQFPNCRTY--DDGKGFVRATLKALA 362 (462)
T ss_pred CCC-c----ceeecCCceEec--CCHHHHHHHHHHHHc
Confidence 543 2 345557888887 378889888887775
No 443
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=29.61 E-value=2.1e+02 Score=30.28 Aligned_cols=72 Identities=14% Similarity=0.111 Sum_probs=43.6
Q ss_pred cEEEEEeCCHHHH---HHHHHHHhhCCCEEEE--------ECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHc
Q 008626 18 LRVLLLDQDSSAA---AELKFKLEAMDYIVST--------FYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA 86 (559)
Q Consensus 18 lrVLIVDDD~~~~---~~L~~~L~~~gy~V~t--------a~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~I 86 (559)
-|+|||-|..... +.+...|+..|..+.. ..+..++.+.+++ ..+|+||. +.+ +.-+++.+.+
T Consensus 23 ~r~livt~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~--~~~D~IIa---vGG-GS~iD~aK~i 96 (351)
T cd08170 23 KRALIIADEFVLDLVGAKIEESLAAAGIDARFEVFGGECTRAEIERLAEIARD--NGADVVIG---IGG-GKTLDTAKAV 96 (351)
T ss_pred CeEEEEECHHHHHHHHHHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHHhh--cCCCEEEE---ecC-chhhHHHHHH
Confidence 5899998765433 3344555555555421 2345566777777 78998876 444 4445555544
Q ss_pred ---CCCcEEEEe
Q 008626 87 ---KDLPTIITS 95 (559)
Q Consensus 87 ---rdiPVImLS 95 (559)
..+|+|.+-
T Consensus 97 a~~~~~P~iaIP 108 (351)
T cd08170 97 ADYLGAPVVIVP 108 (351)
T ss_pred HHHcCCCEEEeC
Confidence 478888774
No 444
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=29.60 E-value=3.4e+02 Score=28.10 Aligned_cols=98 Identities=14% Similarity=0.169 Sum_probs=57.5
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCEEEE-EC--CHHHHHHHhhcCCCCeeEEE-----EecCCCCCCCHHHHHHHcC---C
Q 008626 20 VLLLDQDSSAAAELKFKLEAMDYIVST-FY--NENEALSAFSDKPENFHVAI-----VEVTTSNTDGSFKFLETAK---D 88 (559)
Q Consensus 20 VLIVDDD~~~~~~L~~~L~~~gy~V~t-a~--~~~eAL~~Lre~~~~pDLVI-----vDv~MPd~mdG~eLLe~Ir---d 88 (559)
|+|.|--..-.+.+...+++.|...+. ++ +..+=++.+.+....|=.++ +...-....+..++++.++ +
T Consensus 121 viipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~~ 200 (258)
T PRK13111 121 LIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFVYYVSRAGVTGARSADAADLAELVARLKAHTD 200 (258)
T ss_pred EEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcCC
Confidence 566666666666777777778876442 22 32344454544212232222 2221111012455777776 7
Q ss_pred CcEEEEecCCCHHHHHHHHHcCCCEEEeCC
Q 008626 89 LPTIITSNIHCLSTMMKCIALGAVEFLRKP 118 (559)
Q Consensus 89 iPVImLSa~~d~e~v~kAi~~GA~DYLvKP 118 (559)
+||++=.+-.+.+.+.+++.. |++.++-.
T Consensus 201 ~pv~vGfGI~~~e~v~~~~~~-ADGviVGS 229 (258)
T PRK13111 201 LPVAVGFGISTPEQAAAIAAV-ADGVIVGS 229 (258)
T ss_pred CcEEEEcccCCHHHHHHHHHh-CCEEEEcH
Confidence 999987777788888888875 99998864
No 445
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=29.58 E-value=5e+02 Score=28.97 Aligned_cols=55 Identities=25% Similarity=0.296 Sum_probs=32.9
Q ss_pred CCcEEEEEeCCHHH---HHHHHHHHhhCCCEEEEEC---CH----HHHHHHhhcCCCCeeEEEEecC
Q 008626 16 KGLRVLLLDQDSSA---AAELKFKLEAMDYIVSTFY---NE----NEALSAFSDKPENFHVAIVEVT 72 (559)
Q Consensus 16 ~glrVLIVDDD~~~---~~~L~~~L~~~gy~V~ta~---~~----~eAL~~Lre~~~~pDLVIvDv~ 72 (559)
.+.+|++|+-|..- .+.|..+....|..+..+. +. .++++.+.. ..+|+||+|..
T Consensus 127 ~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~~--~~~DvVIIDTa 191 (428)
T TIGR00959 127 QGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYAKE--NGFDVVIVDTA 191 (428)
T ss_pred CCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHh--cCCCEEEEeCC
Confidence 36799999988432 2334444445565555433 23 234445545 56999999984
No 446
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=29.52 E-value=4.9e+02 Score=27.11 Aligned_cols=69 Identities=17% Similarity=0.217 Sum_probs=46.3
Q ss_pred EECCHHHHHHHhhcCCCCeeEEEEecCCCCC----CCHHHHHHHc----C-CCcEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008626 46 TFYNENEALSAFSDKPENFHVAIVEVTTSNT----DGSFKFLETA----K-DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (559)
Q Consensus 46 ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~----mdG~eLLe~I----r-diPVImLSa~~d~e~v~kAi~~GA~DYLv 116 (559)
.+.+.++|...... ..|.|++.-+-... ...++++..+ . ++|||.-.+-.+...+.+++.+||+...+
T Consensus 179 ~v~s~~~a~~a~~~---G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~i 255 (299)
T cd02809 179 GILTPEDALRAVDA---GADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLI 255 (299)
T ss_pred ecCCHHHHHHHHHC---CCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 34666666555433 57777775432110 1235555544 2 59999888889999999999999998876
Q ss_pred C
Q 008626 117 K 117 (559)
Q Consensus 117 K 117 (559)
=
T Consensus 256 g 256 (299)
T cd02809 256 G 256 (299)
T ss_pred c
Confidence 4
No 447
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=29.50 E-value=2.6e+02 Score=28.64 Aligned_cols=73 Identities=12% Similarity=0.074 Sum_probs=43.1
Q ss_pred EEEEEeCCH----HHHHHHHHHHhhCCCEEEE---E----CCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC
Q 008626 19 RVLLLDQDS----SAAAELKFKLEAMDYIVST---F----YNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK 87 (559)
Q Consensus 19 rVLIVDDD~----~~~~~L~~~L~~~gy~V~t---a----~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir 87 (559)
+|.|+-+|. .....++..|+..|++|+. + .+....+..|++ ..+|+|++...-++ ...+++.++
T Consensus 134 ~v~i~~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~v~~l~~--~~pd~v~~~~~~~~---~~~~~~~~~ 208 (333)
T cd06358 134 RWYLIGNDYVWPRGSLAAAKRYIAELGGEVVGEEYVPLGTTDFTSVLERIAA--SGADAVLSTLVGQD---AVAFNRQFA 208 (333)
T ss_pred eEEEEeccchhhHHHHHHHHHHHHHcCCEEeeeeeecCChHHHHHHHHHHHH--cCCCEEEEeCCCCc---hHHHHHHHH
Confidence 565554442 3345667777777887752 2 244455666666 67898888764433 556666664
Q ss_pred ----CCcEEEEec
Q 008626 88 ----DLPTIITSN 96 (559)
Q Consensus 88 ----diPVImLSa 96 (559)
..+++..+.
T Consensus 209 ~~G~~~~~~~~~~ 221 (333)
T cd06358 209 AAGLRDRILRLSP 221 (333)
T ss_pred HcCCCccCceeec
Confidence 345554443
No 448
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=29.50 E-value=4.1e+02 Score=27.58 Aligned_cols=91 Identities=13% Similarity=0.084 Sum_probs=58.7
Q ss_pred EEEEEeCCHHHHHHHHHHH---h-hCC---CEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHH-HHHHcC-CC
Q 008626 19 RVLLLDQDSSAAAELKFKL---E-AMD---YIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFK-FLETAK-DL 89 (559)
Q Consensus 19 rVLIVDDD~~~~~~L~~~L---~-~~g---y~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~e-LLe~Ir-di 89 (559)
.|||.|++......+...+ + ..+ +..+.|.+.+++.+.+.. ..|+|.+|-.-++ +++ +++.++ .+
T Consensus 154 ~vlikdnHi~~~g~i~~~v~~~r~~~~~~~~Igvev~s~eea~~A~~~---gaDyI~ld~~~~e---~l~~~~~~~~~~i 227 (268)
T cd01572 154 AVLIKDNHIAAAGSITEAVRRARAAAPFTLKIEVEVETLEQLKEALEA---GADIIMLDNMSPE---ELREAVALLKGRV 227 (268)
T ss_pred eeeeehHHHHHhCCHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHc---CCCEEEECCcCHH---HHHHHHHHcCCCC
Confidence 5788888766553333222 2 233 234488999999988765 5899999864333 332 233333 47
Q ss_pred cEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008626 90 PTIITSNIHCLSTMMKCIALGAVEFLR 116 (559)
Q Consensus 90 PVImLSa~~d~e~v~kAi~~GA~DYLv 116 (559)
|++ .++.-..+.+.+..+.|++.+-+
T Consensus 228 pi~-AiGGI~~~ni~~~a~~Gvd~Iav 253 (268)
T cd01572 228 LLE-ASGGITLENIRAYAETGVDYISV 253 (268)
T ss_pred cEE-EECCCCHHHHHHHHHcCCCEEEE
Confidence 755 55666788999999999987643
No 449
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=29.48 E-value=6e+02 Score=26.47 Aligned_cols=47 Identities=9% Similarity=0.132 Sum_probs=28.9
Q ss_pred HHHHcC-CCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008626 82 FLETAK-DLPTIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 82 LLe~Ir-diPVImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
+++... .+|+|.+....... +.+..|+. +++ +-+.++|...+..++.
T Consensus 286 ~~EA~a~g~PvI~~~~~~~~~---e~~~~g~~-~lv-~~d~~~i~~ai~~ll~ 333 (365)
T TIGR00236 286 QEEAPSLGKPVLVLRDTTERP---ETVEAGTN-KLV-GTDKENITKAAKRLLT 333 (365)
T ss_pred HHHHHHcCCCEEECCCCCCCh---HHHhcCce-EEe-CCCHHHHHHHHHHHHh
Confidence 344443 89998875433222 34455644 444 5788999888887763
No 450
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=29.37 E-value=2.8e+02 Score=27.97 Aligned_cols=76 Identities=14% Similarity=0.208 Sum_probs=50.1
Q ss_pred HHHHHHHhhcCCCCe-eEEEEecCCCCCCCH--HHHHHHcC---CCcEEEEecCCCHHHHHHHHH---cCCCEEEeC---
Q 008626 50 ENEALSAFSDKPENF-HVAIVEVTTSNTDGS--FKFLETAK---DLPTIITSNIHCLSTMMKCIA---LGAVEFLRK--- 117 (559)
Q Consensus 50 ~~eAL~~Lre~~~~p-DLVIvDv~MPd~mdG--~eLLe~Ir---diPVImLSa~~d~e~v~kAi~---~GA~DYLvK--- 117 (559)
..+.++.+.+ ... .+++.|+..-+...| +++++.+. ++|||.--.-.+.+.+.++.+ .||++.++-
T Consensus 148 ~~~~~~~l~~--~G~~~iiv~~~~~~g~~~G~d~~~i~~i~~~~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~ 225 (241)
T PRK14024 148 LWEVLERLDS--AGCSRYVVTDVTKDGTLTGPNLELLREVCARTDAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKAL 225 (241)
T ss_pred HHHHHHHHHh--cCCCEEEEEeecCCCCccCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHH
Confidence 3555666655 334 588888876542233 56666664 799998777778888877754 599988763
Q ss_pred ---CCCHHHHHHH
Q 008626 118 ---PLSEDKLRNL 127 (559)
Q Consensus 118 ---Pis~eeL~~i 127 (559)
.++.++++..
T Consensus 226 ~~g~~~~~~~~~~ 238 (241)
T PRK14024 226 YAGAFTLPEALAV 238 (241)
T ss_pred HcCCCCHHHHHHH
Confidence 6666665543
No 451
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=29.30 E-value=3.4e+02 Score=30.33 Aligned_cols=54 Identities=24% Similarity=0.373 Sum_probs=31.9
Q ss_pred CcEEEEEeCCHHHHHHH---HHHHhhCCCEEEEEC---CH----HHHHHHhhcCCCCeeEEEEecC
Q 008626 17 GLRVLLLDQDSSAAAEL---KFKLEAMDYIVSTFY---NE----NEALSAFSDKPENFHVAIVEVT 72 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L---~~~L~~~gy~V~ta~---~~----~eAL~~Lre~~~~pDLVIvDv~ 72 (559)
+.+|+||+-|+.-.... +.+-+..+..+.... +. .++++.++. ..+|+||+|.-
T Consensus 128 G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~--~~~DvViIDTa 191 (429)
T TIGR01425 128 GFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKK--ENFDIIIVDTS 191 (429)
T ss_pred CCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHHh--CCCCEEEEECC
Confidence 56899999886443222 222333455444332 21 245666665 57999999984
No 452
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=29.25 E-value=2.8e+02 Score=30.21 Aligned_cols=68 Identities=10% Similarity=0.037 Sum_probs=46.0
Q ss_pred eeEEEEecCCCCCCCHHHHHHHcC-CCcEEEEec-CCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Q 008626 64 FHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSN-IHCLSTMMKCIALGAVEFLRKPLSEDKLRNLWQHV 131 (559)
Q Consensus 64 pDLVIvDv~MPd~mdG~eLLe~Ir-diPVImLSa-~~d~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~v 131 (559)
.+.+|++..-..+.---.++..+. +..||.... .++...+...++.|+++.+++|-+..+|+.....+
T Consensus 89 ~~~viv~~~dW~iIPlEnlIA~~~~~~~l~a~v~~~~eA~~a~~~LE~G~dGVvl~~~d~~ei~~~~~~~ 158 (344)
T PRK02290 89 VDYVIVEGRDWTIIPLENLIADLGQSGKIIAGVADAEEAKLALEILEKGVDGVLLDPDDPNEIKAIVALI 158 (344)
T ss_pred CCEEEEECCCCcEecHHHHHhhhcCCceEEEEeCCHHHHHHHHHHhccCCCeEEECCCCHHHHHHHHHHH
Confidence 477777776544222333555443 355554443 35666788999999999999999999999865543
No 453
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=29.21 E-value=1.2e+02 Score=32.61 Aligned_cols=51 Identities=10% Similarity=0.113 Sum_probs=36.9
Q ss_pred CeeEEEEecCCCCCCC-HHHHHHHcC----CCcEEEEecCCCHHHHHHHHHcCCCEEE
Q 008626 63 NFHVAIVEVTTSNTDG-SFKFLETAK----DLPTIITSNIHCLSTMMKCIALGAVEFL 115 (559)
Q Consensus 63 ~pDLVIvDv~MPd~md-G~eLLe~Ir----diPVImLSa~~d~e~v~kAi~~GA~DYL 115 (559)
.+|+|.+|+..++ .. -.++++.|+ +++||+ -.-.+.+.+..++++||+..+
T Consensus 111 ~~d~i~iD~a~gh-~~~~~e~I~~ir~~~p~~~vi~-g~V~t~e~a~~l~~aGad~i~ 166 (326)
T PRK05458 111 TPEYITIDIAHGH-SDSVINMIQHIKKHLPETFVIA-GNVGTPEAVRELENAGADATK 166 (326)
T ss_pred CCCEEEEECCCCc-hHHHHHHHHHHHhhCCCCeEEE-EecCCHHHHHHHHHcCcCEEE
Confidence 3599999999877 33 456777776 244433 235578899999999999865
No 454
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=29.18 E-value=1.2e+02 Score=32.12 Aligned_cols=55 Identities=15% Similarity=0.247 Sum_probs=41.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEE-------CCHHHHHHHhhcCCCCeeEEEEecCCCC
Q 008626 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTF-------YNENEALSAFSDKPENFHVAIVEVTTSN 75 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~ta-------~~~~eAL~~Lre~~~~pDLVIvDv~MPd 75 (559)
|+|||+.+.-.+-..|...|. .+++|+.. .+.+...+.+++ .+||+||--.-+.+
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~~Ditd~~~v~~~i~~--~~PDvVIn~AAyt~ 62 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GEFEVIATDRAELDITDPDAVLEVIRE--TRPDVVINAAAYTA 62 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CCceEEeccCccccccChHHHHHHHHh--hCCCEEEECccccc
Confidence 459999999999999999998 56777743 355566667777 67888887666655
No 455
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=29.14 E-value=1e+02 Score=31.83 Aligned_cols=55 Identities=13% Similarity=0.137 Sum_probs=33.3
Q ss_pred EEEEEe--CCHHHHHHHHHHHhhCCCEEEEECCHHHHHH------Hh---hcCCCCeeEEEEecCC
Q 008626 19 RVLLLD--QDSSAAAELKFKLEAMDYIVSTFYNENEALS------AF---SDKPENFHVAIVEVTT 73 (559)
Q Consensus 19 rVLIVD--DD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~------~L---re~~~~pDLVIvDv~M 73 (559)
+++|+. ......+.+...+++.||+|..+...+..+. .+ ......+|+||.-.+-
T Consensus 2 ~~~i~~~~~s~~s~~~~~~a~~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~ 67 (300)
T PRK10446 2 KIAILSRDGTLYSCKRLREAAIQRGHLVEILDPLSCYMNINPAASSIHYKGRKLPHFDAVIPRIGT 67 (300)
T ss_pred eEEEEecCCcchhHHHHHHHHHHcCCeEEEEehHHceEecCCCcccEEECCcccCCCCEEEEcCCC
Confidence 455554 5556678888999999999997763332111 11 0001368999985553
No 456
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=29.10 E-value=7.5e+02 Score=26.62 Aligned_cols=96 Identities=13% Similarity=0.056 Sum_probs=0.0
Q ss_pred CcEEEEEeC----CHHHHHHHHHHHhhCCCEEEEEC---CHHHHHHHhhcCCCCeeEEEEecCCCCCCC-----------
Q 008626 17 GLRVLLLDQ----DSSAAAELKFKLEAMDYIVSTFY---NENEALSAFSDKPENFHVAIVEVTTSNTDG----------- 78 (559)
Q Consensus 17 glrVLIVDD----D~~~~~~L~~~L~~~gy~V~ta~---~~~eAL~~Lre~~~~pDLVIvDv~MPd~md----------- 78 (559)
...++++|- ...+.+.++.+-+....-.+.+. +.+.|..++.. ..|.|.+-+.-.. ..
T Consensus 108 ~~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~a---Gad~I~V~~G~G~-~~~tr~~~g~g~~ 183 (321)
T TIGR01306 108 TPEYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENA---GADATKVGIGPGK-VCITKIKTGFGTG 183 (321)
T ss_pred CCCEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHc---CcCEEEECCCCCc-cccceeeeccCCC
Q ss_pred --HHHHHHHcC---CCcEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008626 79 --SFKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (559)
Q Consensus 79 --G~eLLe~Ir---diPVImLSa~~d~e~v~kAi~~GA~DYLv 116 (559)
++..+..++ ++|||.-.+-.....+.+|+.+||+...+
T Consensus 184 ~~~l~ai~ev~~a~~~pVIadGGIr~~~Di~KALa~GAd~Vmi 226 (321)
T TIGR01306 184 GWQLAALRWCAKAARKPIIADGGIRTHGDIAKSIRFGASMVMI 226 (321)
T ss_pred chHHHHHHHHHHhcCCeEEEECCcCcHHHHHHHHHcCCCEEee
No 457
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=29.08 E-value=3.7e+02 Score=28.41 Aligned_cols=62 Identities=18% Similarity=0.186 Sum_probs=39.0
Q ss_pred eeEEEEecCCCCCCCHHHHHHHcC-CCcEEEEecCCCHHHHHHHH-HcCCCEEEeCCCCHHHHHHHHHHHHH
Q 008626 64 FHVAIVEVTTSNTDGSFKFLETAK-DLPTIITSNIHCLSTMMKCI-ALGAVEFLRKPLSEDKLRNLWQHVVH 133 (559)
Q Consensus 64 pDLVIvDv~MPd~mdG~eLLe~Ir-diPVImLSa~~d~e~v~kAi-~~GA~DYLvKPis~eeL~~iIq~vlr 133 (559)
.|++|+=..... +-+..+++.+. .+|||.... .. ..+ ..+-+++++. -+.++|.+.+..++.
T Consensus 298 adv~v~Ps~~~e-G~~~~~lEAma~G~PVV~t~~-~~-----~~i~~~~~~g~lv~-~~~~~la~ai~~ll~ 361 (397)
T TIGR03087 298 AAVAVAPLRIAR-GIQNKVLEAMAMAKPVVASPE-AA-----EGIDALPGAELLVA-ADPADFAAAILALLA 361 (397)
T ss_pred CCEEEecccccC-CcccHHHHHHHcCCCEEecCc-cc-----ccccccCCcceEeC-CCHHHHHHHHHHHHc
Confidence 577776543333 34567888875 899986432 11 111 1233577775 899999999888764
No 458
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=28.73 E-value=2.2e+02 Score=29.12 Aligned_cols=64 Identities=11% Similarity=0.137 Sum_probs=36.5
Q ss_pred HHHHHHHHhhCCCEEEEECC---HH---HHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEEEEec
Q 008626 30 AAELKFKLEAMDYIVSTFYN---EN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSN 96 (559)
Q Consensus 30 ~~~L~~~L~~~gy~V~ta~~---~~---eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVImLSa 96 (559)
...+...++..||++..+.+ .+ +.++.+.. ..+|-||+-..... ..-++.+.....+|+|++-.
T Consensus 78 ~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgiii~~~~~~-~~~~~~l~~~~~iPvV~~d~ 147 (341)
T PRK10703 78 IEAVEKNCYQKGYTLILCNAWNNLEKQRAYLSMLAQ--KRVDGLLVMCSEYP-EPLLAMLEEYRHIPMVVMDW 147 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHH--cCCCEEEEecCCCC-HHHHHHHHhcCCCCEEEEec
Confidence 34556666778999886542 22 45556666 67897776432212 12233333324789998853
No 459
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=28.64 E-value=5.3e+02 Score=25.95 Aligned_cols=98 Identities=18% Similarity=0.127 Sum_probs=0.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC----CHHHHHHHhhcCCCCeeEEEE-------------------ecCC
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFY----NENEALSAFSDKPENFHVAIV-------------------EVTT 73 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~----~~~eAL~~Lre~~~~pDLVIv-------------------Dv~M 73 (559)
++-.+|-.++......+.+.|...|+.++.++ .+.++++.+++ .-++++|- =+..
T Consensus 16 ~~iaV~r~~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~--~~p~~~IGAGTVl~~~~a~~a~~aGA~Fivs 93 (212)
T PRK05718 16 PVVPVIVINKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAK--EVPEALIGAGTVLNPEQLAQAIEAGAQFIVS 93 (212)
T ss_pred CEEEEEEcCCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHH--HCCCCEEEEeeccCHHHHHHHHHcCCCEEEC
Q ss_pred CCCCCHHHHHHHcCCCcEEEEecCCCHHHHHHHHHcCCCEEEeCC
Q 008626 74 SNTDGSFKFLETAKDLPTIITSNIHCLSTMMKCIALGAVEFLRKP 118 (559)
Q Consensus 74 Pd~mdG~eLLe~IrdiPVImLSa~~d~e~v~kAi~~GA~DYLvKP 118 (559)
|. .+- ++++..++.-|.++-+-.+...+..|+++|++-+-+-|
T Consensus 94 P~-~~~-~vi~~a~~~~i~~iPG~~TptEi~~a~~~Ga~~vKlFP 136 (212)
T PRK05718 94 PG-LTP-PLLKAAQEGPIPLIPGVSTPSELMLGMELGLRTFKFFP 136 (212)
T ss_pred CC-CCH-HHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCEEEEcc
No 460
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=28.60 E-value=2.2e+02 Score=28.65 Aligned_cols=53 Identities=21% Similarity=0.193 Sum_probs=27.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhC---C-----CEEEEECC---HHHHHHHhhcCCCCeeEEEEecC
Q 008626 16 KGLRVLLLDQDSSAAAELKFKLEAM---D-----YIVSTFYN---ENEALSAFSDKPENFHVAIVEVT 72 (559)
Q Consensus 16 ~glrVLIVDDD~~~~~~L~~~L~~~---g-----y~V~ta~~---~~eAL~~Lre~~~~pDLVIvDv~ 72 (559)
.|.+|+|||-|+.- .+..++... + +.+..... ..++++.+.. ..||+||+|.-
T Consensus 29 ~G~~VlliD~DpQ~--s~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~yD~iiID~p 92 (231)
T PRK13849 29 DGKRVALFEADENR--PLTRWKENALRSNTWDPACEVYAADELPLLEAAYEDAEL--QGFDYALADTH 92 (231)
T ss_pred CCCcEEEEeCCCCC--CHHHHHHhhccccCCCccceecCCCHHHHHHHHHHHHhh--CCCCEEEEeCC
Confidence 36799999988743 233333321 1 11111111 1223333333 46999999973
No 461
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=28.41 E-value=4.3e+02 Score=25.23 Aligned_cols=68 Identities=12% Similarity=-0.002 Sum_probs=45.7
Q ss_pred EEECCHHHHHHHhhcCCCCeeEEEEecCCCCC------CCHHHHHHHcC---CCcEEEEecCCCHHHHHHHHHcCCCEEE
Q 008626 45 STFYNENEALSAFSDKPENFHVAIVEVTTSNT------DGSFKFLETAK---DLPTIITSNIHCLSTMMKCIALGAVEFL 115 (559)
Q Consensus 45 ~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~------mdG~eLLe~Ir---diPVImLSa~~d~e~v~kAi~~GA~DYL 115 (559)
..|.+.+++.+..+. .+|.|++.--.+.. .-|++.++.+. .+||+.+-+-+ .+.+.++.++||+++-
T Consensus 100 ~S~h~~~e~~~a~~~---g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~~~pv~AlGGI~-~~~i~~l~~~Ga~gvA 175 (180)
T PF02581_consen 100 ASCHSLEEAREAEEL---GADYVFLGPVFPTSSKPGAPPLGLDGLREIARASPIPVYALGGIT-PENIPELREAGADGVA 175 (180)
T ss_dssp EEESSHHHHHHHHHC---TTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHTSSCEEEESS---TTTHHHHHHTT-SEEE
T ss_pred eecCcHHHHHHhhhc---CCCEEEECCccCCCCCccccccCHHHHHHHHHhCCCCEEEEcCCC-HHHHHHHHHcCCCEEE
Confidence 388999996665544 57988887765431 23777776664 79999997753 4557788899999875
Q ss_pred e
Q 008626 116 R 116 (559)
Q Consensus 116 v 116 (559)
+
T Consensus 176 v 176 (180)
T PF02581_consen 176 V 176 (180)
T ss_dssp E
T ss_pred E
Confidence 4
No 462
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=28.38 E-value=4.9e+02 Score=28.39 Aligned_cols=78 Identities=10% Similarity=-0.054 Sum_probs=48.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCC-EEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC---CCcEE
Q 008626 18 LRVLLLDQDSSAAAELKFKLEAMDY-IVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPTI 92 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy-~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir---diPVI 92 (559)
-+|+-||-++...+..+.-+...++ .+. ...+..+.+..+......||+||+|--=.+ -..++++.+. .--+|
T Consensus 315 ~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr~G--~~~~~l~~l~~l~~~~iv 392 (431)
T TIGR00479 315 KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDPPRKG--CAAEVLRTIIELKPERIV 392 (431)
T ss_pred CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECcCCCC--CCHHHHHHHHhcCCCEEE
Confidence 4799999999999888888876665 233 556777665543221146999999863211 1345555543 23455
Q ss_pred EEecC
Q 008626 93 ITSNI 97 (559)
Q Consensus 93 mLSa~ 97 (559)
.+|.+
T Consensus 393 yvsc~ 397 (431)
T TIGR00479 393 YVSCN 397 (431)
T ss_pred EEcCC
Confidence 56654
No 463
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=28.33 E-value=2e+02 Score=36.31 Aligned_cols=110 Identities=12% Similarity=0.145 Sum_probs=68.5
Q ss_pred cEEEEE----eCCHHHHHHHHHHHhhCCCEEEEEC---CHHHHHHHhhcCCCCeeEEEEecCCCCCCCH-HHHHHHcC--
Q 008626 18 LRVLLL----DQDSSAAAELKFKLEAMDYIVSTFY---NENEALSAFSDKPENFHVAIVEVTTSNTDGS-FKFLETAK-- 87 (559)
Q Consensus 18 lrVLIV----DDD~~~~~~L~~~L~~~gy~V~ta~---~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG-~eLLe~Ir-- 87 (559)
-+||+. |-+..=..++..+|+..||+|+-.. ..++.++.+.+ ..+|+|.+-..|...+.. .++++.++
T Consensus 752 gkvvlaTv~GDvHDIGkniV~~~L~~~GfeVIdLG~~vp~e~iv~aa~e--~~~diVgLS~L~t~s~~~m~~~i~~L~~~ 829 (1229)
T PRK09490 752 GKILMATVKGDVHDIGKNIVGVVLQCNNYEVIDLGVMVPAEKILETAKE--ENADIIGLSGLITPSLDEMVHVAKEMERQ 829 (1229)
T ss_pred CeEEEEeCCCCcchHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHH--hCCCEEEEcCcchhhHHHHHHHHHHHHhc
Confidence 477777 6666666777888888899999544 67888888888 789999988877652332 34555553
Q ss_pred --CCcEEEEecCCCHHH-HHH--HHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 008626 88 --DLPTIITSNIHCLST-MMK--CIALGAVEFLRKPLSEDKLRNLWQHVV 132 (559)
Q Consensus 88 --diPVImLSa~~d~e~-v~k--Ai~~GA~DYLvKPis~eeL~~iIq~vl 132 (559)
+++|++=-+.-+... ..+ ..-.||+.|.. +..+-......++
T Consensus 830 g~~v~v~vGGa~~s~~~ta~~i~~~y~gad~y~~---DA~~~v~~~~~l~ 876 (1229)
T PRK09490 830 GFTIPLLIGGATTSKAHTAVKIAPNYSGPVVYVT---DASRAVGVVSSLL 876 (1229)
T ss_pred CCCCeEEEEeeccchhhhhhhhhhcccCCcEEec---CHHHHHHHHHHHh
Confidence 577765544433222 111 11128888875 4444444444444
No 464
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=28.30 E-value=4.1e+02 Score=27.66 Aligned_cols=91 Identities=12% Similarity=0.069 Sum_probs=57.5
Q ss_pred EEEEeCCHHHHHHH--HHHHh----hCC--CEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----
Q 008626 20 VLLLDQDSSAAAEL--KFKLE----AMD--YIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---- 87 (559)
Q Consensus 20 VLIVDDD~~~~~~L--~~~L~----~~g--y~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir---- 87 (559)
|||-|++......+ .+.+. ..+ ...+.|.+.++|.+.+.. ..|+|.+|-.-|. +--++++.++
T Consensus 155 vlikdnH~~~~g~~~~~~av~~~R~~~~~~~IgVev~t~eea~~A~~~---gaD~I~ld~~~p~--~l~~~~~~~~~~~~ 229 (272)
T cd01573 155 ILVFAEHRAFLGGPEPLKALARLRATAPEKKIVVEVDSLEEALAAAEA---GADILQLDKFSPE--ELAELVPKLRSLAP 229 (272)
T ss_pred eEeehhHHHHhCCchHHHHHHHHHHhCCCCeEEEEcCCHHHHHHHHHc---CCCEEEECCCCHH--HHHHHHHHHhccCC
Confidence 77777664443322 22221 122 234488999999988754 6799999964444 2223444454
Q ss_pred CCcEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008626 88 DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (559)
Q Consensus 88 diPVImLSa~~d~e~v~kAi~~GA~DYLv 116 (559)
++|++ .++.-+.+.+.+..+.||+.+.+
T Consensus 230 ~i~i~-AsGGI~~~ni~~~~~~Gvd~I~v 257 (272)
T cd01573 230 PVLLA-AAGGINIENAAAYAAAGADILVT 257 (272)
T ss_pred CceEE-EECCCCHHHHHHHHHcCCcEEEE
Confidence 46654 45556888999999999998754
No 465
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=28.20 E-value=3e+02 Score=31.93 Aligned_cols=89 Identities=17% Similarity=0.203 Sum_probs=46.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC-CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC----CCcE
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAMDYIVSTFY-NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK----DLPT 91 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~-~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir----diPV 91 (559)
+..+.+||.|+...+.++ +.|+.|..-+ +-.+.|+...- ++.|++|+-+.-++ .-..++..++ +++|
T Consensus 423 g~~vvvID~d~~~v~~~~----~~g~~v~~GDat~~~~L~~agi--~~A~~vvv~~~d~~--~n~~i~~~ar~~~p~~~i 494 (621)
T PRK03562 423 GVKMTVLDHDPDHIETLR----KFGMKVFYGDATRMDLLESAGA--AKAEVLINAIDDPQ--TSLQLVELVKEHFPHLQI 494 (621)
T ss_pred CCCEEEEECCHHHHHHHH----hcCCeEEEEeCCCHHHHHhcCC--CcCCEEEEEeCCHH--HHHHHHHHHHHhCCCCeE
Confidence 456667777766544333 3466655322 23334443333 45677777664333 1233333333 6776
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEE
Q 008626 92 IITSNIHCLSTMMKCIALGAVEFL 115 (559)
Q Consensus 92 ImLSa~~d~e~v~kAi~~GA~DYL 115 (559)
|+-+. +.+...+..+.||+..+
T Consensus 495 iaRa~--d~~~~~~L~~~Gad~v~ 516 (621)
T PRK03562 495 IARAR--DVDHYIRLRQAGVEKPE 516 (621)
T ss_pred EEEEC--CHHHHHHHHHCCCCEEe
Confidence 65443 44566677788888653
No 466
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=28.16 E-value=1.7e+02 Score=28.46 Aligned_cols=93 Identities=14% Similarity=0.158 Sum_probs=53.5
Q ss_pred HHHHHHHHHhhCCCEEEEE-C---CHHHH---HHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC--CCcEEEEecCCC
Q 008626 29 AAAELKFKLEAMDYIVSTF-Y---NENEA---LSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNIHC 99 (559)
Q Consensus 29 ~~~~L~~~L~~~gy~V~ta-~---~~~eA---L~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir--diPVImLSa~~d 99 (559)
+...++..++..|+.+..+ . +.++. ++.+.. ..+|.||+...-+. ...++++.+. .+|||.+-..
T Consensus 16 ~~~g~~~~a~~~g~~~~~~~~~~~d~~~q~~~i~~~i~--~~~d~Iiv~~~~~~--~~~~~l~~~~~~gIpvv~~d~~-- 89 (257)
T PF13407_consen 16 VIKGAKAAAKELGYEVEIVFDAQNDPEEQIEQIEQAIS--QGVDGIIVSPVDPD--SLAPFLEKAKAAGIPVVTVDSD-- 89 (257)
T ss_dssp HHHHHHHHHHHHTCEEEEEEESTTTHHHHHHHHHHHHH--TTESEEEEESSSTT--TTHHHHHHHHHTTSEEEEESST--
T ss_pred HHHHHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHH--hcCCEEEecCCCHH--HHHHHHHHHhhcCceEEEEecc--
Confidence 3445666667778887763 2 33333 333344 56999998776555 3557788775 7999987654
Q ss_pred HHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Q 008626 100 LSTMMKCIALGAVEFLRKPLSEDKLRNLWQHVVHK 134 (559)
Q Consensus 100 ~e~v~kAi~~GA~DYLvKPis~eeL~~iIq~vlrr 134 (559)
.........|+. .+..++-..+-..+..
T Consensus 90 -----~~~~~~~~~~v~--~d~~~~G~~~a~~l~~ 117 (257)
T PF13407_consen 90 -----EAPDSPRAAYVG--TDNYEAGKLAAEYLAE 117 (257)
T ss_dssp -----HHTTSTSSEEEE--E-HHHHHHHHHHHHHH
T ss_pred -----ccccccceeeee--ccHHHHHHHHHHHHHH
Confidence 122233344443 3566665554444433
No 467
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=28.12 E-value=2.8e+02 Score=26.97 Aligned_cols=63 Identities=10% Similarity=0.076 Sum_probs=38.7
Q ss_pred HHHHHHHhh-CCCEEEEECC---H---HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC--CCcEEEEecC
Q 008626 31 AELKFKLEA-MDYIVSTFYN---E---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (559)
Q Consensus 31 ~~L~~~L~~-~gy~V~ta~~---~---~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir--diPVImLSa~ 97 (559)
..+...++. .||.+..+.+ . .+.++.+.. ..+|-+|+.-...+ ...++++.+. .+|+|++...
T Consensus 19 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgiii~~~~~~--~~~~~~~~l~~~~iPvv~~~~~ 90 (272)
T cd06301 19 NAMKEHAKVLGGVELQFEDAKNDVATQLSQVENFIA--QGVDAIIVVPVDTA--ATAPIVKAANAAGIPLVYVNRR 90 (272)
T ss_pred HHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHH--cCCCEEEEecCchh--hhHHHHHHHHHCCCeEEEecCC
Confidence 446666777 8999886543 2 244555555 57898887553322 1234555553 7999988653
No 468
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=28.08 E-value=3.2e+02 Score=26.44 Aligned_cols=63 Identities=14% Similarity=0.147 Sum_probs=38.7
Q ss_pred HHHHHHHHHhhCCCEEEEECC---HH---HHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHc--CCCcEEEEecC
Q 008626 29 AAAELKFKLEAMDYIVSTFYN---EN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA--KDLPTIITSNI 97 (559)
Q Consensus 29 ~~~~L~~~L~~~gy~V~ta~~---~~---eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~I--rdiPVImLSa~ 97 (559)
+...+.+.+++.||.+..+.. .. +.++.+.. ..+|-||+.-.... . ..++.+ ..+|+|++-..
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~~---~-~~~~~l~~~~ipvV~~~~~ 87 (265)
T cd06299 17 LATAIQDAASAAGYSTIIGNSDENPETENRYLDNLLS--QRVDGIIVVPHEQS---A-EQLEDLLKRGIPVVFVDRE 87 (265)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHh--cCCCEEEEcCCCCC---h-HHHHHHHhCCCCEEEEecc
Confidence 445667777788999886542 22 33455566 67998888543222 2 234444 37999988653
No 469
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=28.07 E-value=2.1e+02 Score=29.68 Aligned_cols=91 Identities=16% Similarity=0.127 Sum_probs=60.7
Q ss_pred EEEEEeCCHHHHHHHHHHH----hhCC--C-EEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHH-HHHHcC---
Q 008626 19 RVLLLDQDSSAAAELKFKL----EAMD--Y-IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFK-FLETAK--- 87 (559)
Q Consensus 19 rVLIVDDD~~~~~~L~~~L----~~~g--y-~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~e-LLe~Ir--- 87 (559)
.|||-|++......+...+ +..+ . ..+.+.+.+++.+.+.. .+|+|.+|-.-++ .++ +++.++
T Consensus 153 ~ilikdnHi~~~g~~~~~v~~~r~~~~~~~~I~vev~t~eea~~A~~~---gaD~I~ld~~~~e---~l~~~v~~i~~~~ 226 (269)
T cd01568 153 AVLIKDNHIAAAGGITEAVKRARAAAPFEKKIEVEVETLEEAEEALEA---GADIIMLDNMSPE---ELKEAVKLLKGLP 226 (269)
T ss_pred eeeecHhHHHHhCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHc---CCCEEEECCCCHH---HHHHHHHHhccCC
Confidence 5777777755544333222 2233 2 34488999999998866 5899999886554 333 444444
Q ss_pred CCcEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008626 88 DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (559)
Q Consensus 88 diPVImLSa~~d~e~v~kAi~~GA~DYLv 116 (559)
++| |+.++.-+.+.+.+....||+.+-+
T Consensus 227 ~i~-i~asGGIt~~ni~~~a~~Gad~Isv 254 (269)
T cd01568 227 RVL-LEASGGITLENIRAYAETGVDVIST 254 (269)
T ss_pred CeE-EEEECCCCHHHHHHHHHcCCCEEEE
Confidence 444 5567778889999999999987754
No 470
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=28.03 E-value=6.3e+02 Score=27.68 Aligned_cols=63 Identities=16% Similarity=0.268 Sum_probs=43.2
Q ss_pred CHHHHHHHhhcCCCCeeEEEEecCC-------CCCCCHHHHHHHcC--CCcEEEEecCCCHHHHHHHHHcCCCEEE
Q 008626 49 NENEALSAFSDKPENFHVAIVEVTT-------SNTDGSFKFLETAK--DLPTIITSNIHCLSTMMKCIALGAVEFL 115 (559)
Q Consensus 49 ~~~eAL~~Lre~~~~pDLVIvDv~M-------Pd~mdG~eLLe~Ir--diPVImLSa~~d~e~v~kAi~~GA~DYL 115 (559)
+..+..+.+.+ ...|+|.++-+. .. .+-.++.+.+. ++|||+ ..-.+.+.+.++++.||+.++
T Consensus 143 ~~~e~a~~l~e--AGad~I~ihgrt~~q~~~sg~-~~p~~l~~~i~~~~IPVI~-G~V~t~e~A~~~~~aGaDgV~ 214 (369)
T TIGR01304 143 NAREIAPIVVK--AGADLLVIQGTLVSAEHVSTS-GEPLNLKEFIGELDVPVIA-GGVNDYTTALHLMRTGAAGVI 214 (369)
T ss_pred CHHHHHHHHHH--CCCCEEEEeccchhhhccCCC-CCHHHHHHHHHHCCCCEEE-eCCCCHHHHHHHHHcCCCEEE
Confidence 56677777777 678999987432 12 22233333333 789886 566778889999999999987
No 471
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=28.02 E-value=5.9e+02 Score=25.87 Aligned_cols=97 Identities=14% Similarity=0.172 Sum_probs=66.5
Q ss_pred HHHHHHHHHhhCCCEEE--EECCHHHHHHHhhcCCCCeeEEEEecCCCCC----CCHHHHHHHc----C--CCcEEEEec
Q 008626 29 AAAELKFKLEAMDYIVS--TFYNENEALSAFSDKPENFHVAIVEVTTSNT----DGSFKFLETA----K--DLPTIITSN 96 (559)
Q Consensus 29 ~~~~L~~~L~~~gy~V~--ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~----mdG~eLLe~I----r--diPVImLSa 96 (559)
....+-..|+..|+.+. -+.++-.-+..|.. ..||+|=+|-.+-.. .....+++.| + ++.||+ -.
T Consensus 137 ~~~~~l~~L~~~G~~ialDDFGtG~ssl~~L~~--l~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~l~~~vva-EG 213 (256)
T COG2200 137 TALALLRQLRELGVRIALDDFGTGYSSLSYLKR--LPPDILKIDRSFVRDLETDARDQAIVRAIVALAHKLGLTVVA-EG 213 (256)
T ss_pred HHHHHHHHHHHCCCeEEEECCCCCHHHHHHHhh--CCCCeEEECHHHHhhcccCcchHHHHHHHHHHHHHCCCEEEE-ee
Confidence 44456666777888765 78899999999999 889999999765431 1233455554 2 566553 34
Q ss_pred CCCHHHHHHHHHcCCC----EEEeCCCCHHHHHHHH
Q 008626 97 IHCLSTMMKCIALGAV----EFLRKPLSEDKLRNLW 128 (559)
Q Consensus 97 ~~d~e~v~kAi~~GA~----DYLvKPis~eeL~~iI 128 (559)
-++.+......+.|++ .|+.||...+++...+
T Consensus 214 VEt~~ql~~L~~~G~~~~QGylf~~P~~~~~~~~~~ 249 (256)
T COG2200 214 VETEEQLDLLRELGCDYLQGYLFSRPLPADALDALL 249 (256)
T ss_pred cCCHHHHHHHHHcCCCeEeeccccCCCCHHHHHHHH
Confidence 4566667777888876 3477899987776654
No 472
>TIGR00096 probable S-adenosylmethionine-dependent methyltransferase, YraL family. No member of this family is characterized, but Pfam model pfam00590 (tetrapyrrole methylase) demonstrates homology between this family and its other members, which include several methylases for the tetrapyrrole class of compound, as well as the enzyme diphthine synthase.
Probab=28.01 E-value=1.8e+02 Score=30.53 Aligned_cols=87 Identities=5% Similarity=-0.003 Sum_probs=50.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCH----HHHHHHhhcCCCCeeEEEEecCCCCCCC-HHHHHHHcC--CCc
Q 008626 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNE----NEALSAFSDKPENFHVAIVEVTTSNTDG-SFKFLETAK--DLP 90 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~----~eAL~~Lre~~~~pDLVIvDv~MPd~md-G~eLLe~Ir--diP 90 (559)
..|++.||-......|..+--...+.-....+. ...++.+.. ..-=.+++|..||.+.| |+.+++.++ +++
T Consensus 26 ~d~i~~EDTR~t~kLL~~~~I~~~~~~~~~hn~~~~~~~l~~~l~~--g~~valvSDAG~P~ISDPG~~LV~~~~~~~i~ 103 (276)
T TIGR00096 26 VDLFAEEDTRTSKLLLHLGIIATPKAFHIDNEFQEKQNLLAAKLEI--GNNIAVSSDAGPPLISDPGHLLVACREKANII 103 (276)
T ss_pred CCEEEecCchhHHHHHHhcCCCCceEEEecccHhHHHHHHHHHHHc--CCcEEEEecCCCCCcCCccHHHHHHHHHCCCe
Confidence 457888888777666555432222222222233 333344444 44578899999998533 899998886 677
Q ss_pred EEEEecCCCHHHHHHHHHc
Q 008626 91 TIITSNIHCLSTMMKCIAL 109 (559)
Q Consensus 91 VImLSa~~d~e~v~kAi~~ 109 (559)
|+.+-+ ...+..|+..
T Consensus 104 v~~ipG---~sA~~~Al~~ 119 (276)
T TIGR00096 104 VVPLPG---AAALTAALCA 119 (276)
T ss_pred EEcCCh---HHHHHHHHHh
Confidence 766633 3344444443
No 473
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=28.00 E-value=2.3e+02 Score=28.10 Aligned_cols=65 Identities=9% Similarity=0.082 Sum_probs=39.2
Q ss_pred HHHHHHHHHhhCCCEEEEECC------HHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC--CCcEEEEecC
Q 008626 29 AAAELKFKLEAMDYIVSTFYN------ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSNI 97 (559)
Q Consensus 29 ~~~~L~~~L~~~gy~V~ta~~------~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir--diPVImLSa~ 97 (559)
+...+...++..||.+..+.. ..+.++.+.. ..+|-||+...-++ ...+.++.+. .+|||++-..
T Consensus 17 ~~~gi~~~~~~~G~~~~~~~~~~d~~~~~~~i~~~~~--~~vdgiii~~~~~~--~~~~~i~~~~~~~iPvV~~~~~ 89 (272)
T cd06313 17 GKQAADEAGKLLGVDVTWYGGALDAVKQVAAIENMAS--QGWDFIAVDPLGIG--TLTEAVQKAIARGIPVIDMGTL 89 (272)
T ss_pred HHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHH--cCCCEEEEcCCChH--HhHHHHHHHHHCCCcEEEeCCC
Confidence 345567777788999886543 2244555555 67898888532112 1234455543 7999998553
No 474
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=27.88 E-value=2.9e+02 Score=26.80 Aligned_cols=62 Identities=13% Similarity=0.146 Sum_probs=36.8
Q ss_pred HHHHHHHHhhCCCEEEEEC---CHH---HHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHc-CCCcEEEEecC
Q 008626 30 AAELKFKLEAMDYIVSTFY---NEN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETA-KDLPTIITSNI 97 (559)
Q Consensus 30 ~~~L~~~L~~~gy~V~ta~---~~~---eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~I-rdiPVImLSa~ 97 (559)
...+...++..||.+..+. +.+ ++++.+.+ ..+|-||+.-.... . ..++.+ ..+|+|++-..
T Consensus 18 ~~gi~~~~~~~gy~~~~~~~~~~~~~~~~~i~~l~~--~~~dgiii~~~~~~-~---~~~~~~~~~iPvV~i~~~ 86 (265)
T cd06290 18 LKGMERGLNGSGYSPIIATGHWNQSRELEALELLKS--RRVDALILLGGDLP-E---EEILALAEEIPVLAVGRR 86 (265)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHH--CCCCEEEEeCCCCC-h---HHHHHHhcCCCEEEECCC
Confidence 3445666778899987543 222 45666666 67898887643222 1 222233 37999988653
No 475
>PRK10060 RNase II stability modulator; Provisional
Probab=27.87 E-value=4.1e+02 Score=30.85 Aligned_cols=99 Identities=11% Similarity=0.128 Sum_probs=68.3
Q ss_pred HHHHHHHHHHhhCCCEEE--EECCHHHHHHHhhcCCCCeeEEEEecCCC----CCCCHHHHHHHc----C--CCcEEEEe
Q 008626 28 SAAAELKFKLEAMDYIVS--TFYNENEALSAFSDKPENFHVAIVEVTTS----NTDGSFKFLETA----K--DLPTIITS 95 (559)
Q Consensus 28 ~~~~~L~~~L~~~gy~V~--ta~~~~eAL~~Lre~~~~pDLVIvDv~MP----d~mdG~eLLe~I----r--diPVImLS 95 (559)
.....+...|+..|+.+. -+.++-.-+..|.. -.+|.|=+|-.+- .......+++.+ + ++.|| ..
T Consensus 541 ~~~~~~l~~L~~~G~~ialDdfGtg~ssl~~L~~--l~~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~vi-Ae 617 (663)
T PRK10060 541 ELALSVIQQFSQLGAQVHLDDFGTGYSSLSQLAR--FPIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVI-AE 617 (663)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHh--CCCCEEEECHHHHhccccCcchHHHHHHHHHHHHHCCCcEE-Ee
Confidence 344555677788899877 47788899999998 7899999996432 102234455444 1 66665 44
Q ss_pred cCCCHHHHHHHHHcCCC---E-EEeCCCCHHHHHHHHH
Q 008626 96 NIHCLSTMMKCIALGAV---E-FLRKPLSEDKLRNLWQ 129 (559)
Q Consensus 96 a~~d~e~v~kAi~~GA~---D-YLvKPis~eeL~~iIq 129 (559)
+-++.+....+.+.|++ + |+.||+..+++...++
T Consensus 618 GVEt~~q~~~l~~~G~d~~QGy~~~~P~~~~~~~~~l~ 655 (663)
T PRK10060 618 GVETAKEDAFLTKNGVNERQGFLFAKPMPAVAFERWYK 655 (663)
T ss_pred cCCCHHHHHHHHHcCCCEEecCccCCCCCHHHHHHHHH
Confidence 55666777777888884 3 4779999999877553
No 476
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=27.86 E-value=2.4e+02 Score=29.91 Aligned_cols=72 Identities=10% Similarity=0.139 Sum_probs=43.2
Q ss_pred cEEEEEeCCHHH---HHHHHHHHhhCCCEEEEEC---------CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHH
Q 008626 18 LRVLLLDQDSSA---AAELKFKLEAMDYIVSTFY---------NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLET 85 (559)
Q Consensus 18 lrVLIVDDD~~~---~~~L~~~L~~~gy~V~ta~---------~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~ 85 (559)
-|+|||-|.... .+.+...|+..|..+..+. +..++.+..++ ..+|+||. +.+ +.-+++.+.
T Consensus 23 ~r~liv~d~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~--~~~d~iia---vGG-Gs~~D~aK~ 96 (345)
T cd08171 23 KKVVVIGGKTALAAAKDKIKAALEQSGIEITDFIWYGGESTYENVERLKKNPAV--QEADMIFA---VGG-GKAIDTVKV 96 (345)
T ss_pred CEEEEEeCHHHHHHHHHHHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHHhh--cCCCEEEE---eCC-cHHHHHHHH
Confidence 589999886543 3445666666666544222 34455555566 67899886 334 444555554
Q ss_pred c---CCCcEEEEe
Q 008626 86 A---KDLPTIITS 95 (559)
Q Consensus 86 I---rdiPVImLS 95 (559)
+ ..+|+|.+-
T Consensus 97 ia~~~~~p~i~VP 109 (345)
T cd08171 97 LADKLGKPVFTFP 109 (345)
T ss_pred HHHHcCCCEEEec
Confidence 4 367777664
No 477
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=27.79 E-value=3e+02 Score=29.64 Aligned_cols=79 Identities=22% Similarity=0.219 Sum_probs=54.9
Q ss_pred HHHHhhCCCEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCH--------HHHHHHcC---C-CcEEEEecCCCH
Q 008626 34 KFKLEAMDYIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGS--------FKFLETAK---D-LPTIITSNIHCL 100 (559)
Q Consensus 34 ~~~L~~~gy~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG--------~eLLe~Ir---d-iPVImLSa~~d~ 100 (559)
...|...|..|. .+.+..+|.+..+- ..|.||..=.=.+...| +.|+.+++ + +|||.--+-.+-
T Consensus 120 i~~~~~~g~~v~~~v~~~~~A~~~~~~---G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~~~iPViAAGGI~dg 196 (336)
T COG2070 120 VARLKAAGIKVIHSVITVREALKAERA---GADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAVDGIPVIAAGGIADG 196 (336)
T ss_pred HHHHHHcCCeEEEEeCCHHHHHHHHhC---CCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHhcCCCEEEecCccCh
Confidence 344444565544 78888888877665 45777765542221223 66777775 6 899999899999
Q ss_pred HHHHHHHHcCCCEEE
Q 008626 101 STMMKCIALGAVEFL 115 (559)
Q Consensus 101 e~v~kAi~~GA~DYL 115 (559)
..+..|+.+||+..-
T Consensus 197 ~~i~AAlalGA~gVq 211 (336)
T COG2070 197 RGIAAALALGADGVQ 211 (336)
T ss_pred HHHHHHHHhccHHHH
Confidence 999999999998643
No 478
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=27.77 E-value=4.3e+02 Score=25.36 Aligned_cols=77 Identities=19% Similarity=0.166 Sum_probs=48.6
Q ss_pred EEEEE---eCCHHHHHHHHHHHhhCC--CEEEEEC---CHHHHHHHhhcC-CCCeeEEEEecCCCCCCCHHHHHHHcCCC
Q 008626 19 RVLLL---DQDSSAAAELKFKLEAMD--YIVSTFY---NENEALSAFSDK-PENFHVAIVEVTTSNTDGSFKFLETAKDL 89 (559)
Q Consensus 19 rVLIV---DDD~~~~~~L~~~L~~~g--y~V~ta~---~~~eAL~~Lre~-~~~pDLVIvDv~MPd~mdG~eLLe~Irdi 89 (559)
+|.|| +.|..+.+.....|+.+| |++..++ +.++.++++++. ...++++|.-..|.. .---++.-+...
T Consensus 2 ~V~Ii~gs~SD~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~a--~Lpgvva~~t~~ 79 (150)
T PF00731_consen 2 KVAIIMGSTSDLPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEYEARGADVIIAVAGMSA--ALPGVVASLTTL 79 (150)
T ss_dssp EEEEEESSGGGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEEEESS----HHHHHHHHSSS
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEECCCcc--cchhhheeccCC
Confidence 45555 467788889999999987 4555555 677777777652 146899998777654 112345555689
Q ss_pred cEEEEecC
Q 008626 90 PTIITSNI 97 (559)
Q Consensus 90 PVImLSa~ 97 (559)
|||-+-..
T Consensus 80 PVIgvP~~ 87 (150)
T PF00731_consen 80 PVIGVPVS 87 (150)
T ss_dssp -EEEEEE-
T ss_pred CEEEeecC
Confidence 99987543
No 479
>PF09456 RcsC: RcsC Alpha-Beta-Loop (ABL); InterPro: IPR019017 This domain is found in the C terminus of the signal transduction response regulator (phospho-relay) kinase RcsC, between the ATP-binding region (IPR003594 from INTERPRO) and the receiver region (IPR001789 from INTERPRO). This domain forms a discrete alpha/beta/loop structure []. The Rcs signalling pathway controls a variety of physiological functions like capsule synthesis, cell division or motility in prokaryotes. The Rcs regulation cascade, involving a multi-step phosphorelay between the two membrane-bound hybrid sensor kinases RcsC and RcsD and the global regulator RcsB, is, up to now, one of the most complicated regulatory systems in bacteria []. ; GO: 0004673 protein histidine kinase activity, 0004871 signal transducer activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent, 0018106 peptidyl-histidine phosphorylation, 0005886 plasma membrane, 0016021 integral to membrane; PDB: 2AYY_A 2AYX_A.
Probab=27.73 E-value=1.2e+02 Score=27.01 Aligned_cols=88 Identities=14% Similarity=0.052 Sum_probs=44.0
Q ss_pred EEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcCCCcEEEEecCCCH
Q 008626 21 LLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSNIHCL 100 (559)
Q Consensus 21 LIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVImLSa~~d~ 100 (559)
.+.=-+......|.++|+..|++|..+.. ++. ..-|++|+|..... ....-.+|.++...--
T Consensus 3 wL~irNa~Le~yL~~lL~~~G~~v~~y~~-q~~--------~~~DvlItD~~~~~---------~~~~~a~I~~s~~hiG 64 (92)
T PF09456_consen 3 WLAIRNAYLESYLQRLLSYHGFQVQRYEG-QQP--------DADDVLITDYEPQV---------AWPGRAVIRFSRRHIG 64 (92)
T ss_dssp EEE---HHHHHHHHHHHCTTTEEEEE-SS-------------TT-EEEEESS-S-------------SSEEEEEESS-SS
T ss_pred EEEehhHHHHHHHHHHHHHCCcEEEEecC-CCC--------CCCcEEEECCCccc---------CCcceEEEEEchHhCC
Confidence 34445666777889999999999998873 222 23599999997654 1112345666654211
Q ss_pred HHHHHHHHcCCCEEEeCCCCHHHHHHHHHH
Q 008626 101 STMMKCIALGAVEFLRKPLSEDKLRNLWQH 130 (559)
Q Consensus 101 e~v~kAi~~GA~DYLvKPis~eeL~~iIq~ 130 (559)
...+......+.-.....||...+.+
T Consensus 65 ----~p~E~~pg~Wl~sTat~~eL~~LL~r 90 (92)
T PF09456_consen 65 ----PPQERRPGYWLHSTATPHELPALLDR 90 (92)
T ss_dssp ----S--TTSTTEEEEESS-TTHHHHHHHH
T ss_pred ----CccccCCCcEEeccCCHHHHHHHHHH
Confidence 12233344445445555555554443
No 480
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=27.68 E-value=3.8e+02 Score=31.11 Aligned_cols=55 Identities=11% Similarity=0.178 Sum_probs=34.9
Q ss_pred CcEEEEEeCCHHH---HHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecC
Q 008626 17 GLRVLLLDQDSSA---AAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVT 72 (559)
Q Consensus 17 glrVLIVDDD~~~---~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~ 72 (559)
+.+|.+|+-|... .+.+..+-...|+.+..+.+..+....|... ..+|+||+|.-
T Consensus 380 gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l-~~~DLVLIDTa 437 (559)
T PRK12727 380 PRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERL-RDYKLVLIDTA 437 (559)
T ss_pred CCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHh-ccCCEEEecCC
Confidence 3578888877522 2233333344567777777766666666553 35899999984
No 481
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=27.68 E-value=2.8e+02 Score=28.17 Aligned_cols=66 Identities=5% Similarity=0.055 Sum_probs=46.4
Q ss_pred CHHHHHHHhhcCCCCe-eEEEEecCCCCCCCH--HHHHHHcC--CCcEEEEecCCCHHHHHHHHHcCCCEEEe
Q 008626 49 NENEALSAFSDKPENF-HVAIVEVTTSNTDGS--FKFLETAK--DLPTIITSNIHCLSTMMKCIALGAVEFLR 116 (559)
Q Consensus 49 ~~~eAL~~Lre~~~~p-DLVIvDv~MPd~mdG--~eLLe~Ir--diPVImLSa~~d~e~v~kAi~~GA~DYLv 116 (559)
+..++++.+.+ ..+ .++++|+.--+.+.| +++++.+. ..++|+--.-.+.+.+.++.+.|+++.++
T Consensus 147 ~~~e~~~~l~~--~g~~~ii~tdI~~dGt~~G~d~el~~~~~~~~~~viasGGv~s~~Dl~~l~~~G~~gviv 217 (232)
T PRK13586 147 EVIDGIKKVNE--LELLGIIFTYISNEGTTKGIDYNVKDYARLIRGLKEYAGGVSSDADLEYLKNVGFDYIIV 217 (232)
T ss_pred CHHHHHHHHHh--cCCCEEEEecccccccCcCcCHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 45677777766 344 799999987663455 56777764 34455544456778888888999999886
No 482
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=27.57 E-value=2.1e+02 Score=29.16 Aligned_cols=66 Identities=9% Similarity=0.146 Sum_probs=48.7
Q ss_pred CHHHHHHHhhcCCCC-eeEEEEecCCCCCCCH--HHHHHHcC---CCcEEEEecCCCHHHHHHHHHc-----C-CCEEEe
Q 008626 49 NENEALSAFSDKPEN-FHVAIVEVTTSNTDGS--FKFLETAK---DLPTIITSNIHCLSTMMKCIAL-----G-AVEFLR 116 (559)
Q Consensus 49 ~~~eAL~~Lre~~~~-pDLVIvDv~MPd~mdG--~eLLe~Ir---diPVImLSa~~d~e~v~kAi~~-----G-A~DYLv 116 (559)
+..++++.+.+ .. =.+|++|+.--+.+.| +++++.+. ++|||.--+-.+.+.+.++... | +.+.|+
T Consensus 145 ~~~e~~~~~~~--~g~~~ii~tdI~rdGt~~G~d~el~~~l~~~~~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~gviv 222 (241)
T PRK14114 145 DPVSLLKRLKE--YGLEEIVHTEIEKDGTLQEHDFSLTRKIAIEAEVKVFAAGGISSENSLKTAQRVHRETNGLLKGVIV 222 (241)
T ss_pred CHHHHHHHHHh--cCCCEEEEEeechhhcCCCcCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhcccccCCcEEEEEE
Confidence 45666666665 33 3899999987663455 56777764 7999988888898998888876 5 887776
No 483
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=27.38 E-value=2.3e+02 Score=29.51 Aligned_cols=64 Identities=9% Similarity=0.048 Sum_probs=38.7
Q ss_pred HHHHHHHHHhhCCCEEEEECC------HHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC--CCcEEEEec
Q 008626 29 AAAELKFKLEAMDYIVSTFYN------ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (559)
Q Consensus 29 ~~~~L~~~L~~~gy~V~ta~~------~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir--diPVImLSa 96 (559)
+...++..+...||.+..+.. ..++++.+.+ ..+|-||+.-.... .-.+.++.+. .+|||++-.
T Consensus 43 ~~~gi~~~a~~~g~~l~i~~~~~~~~~~~~~i~~l~~--~~vDGiIi~~~~~~--~~~~~l~~~~~~~iPvV~id~ 114 (330)
T PRK10355 43 DRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMIN--RGVDVLVIIPYNGQ--VLSNVIKEAKQEGIKVLAYDR 114 (330)
T ss_pred HHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHH--cCCCEEEEeCCChh--hHHHHHHHHHHCCCeEEEECC
Confidence 334556666778999886654 3355666666 67998887432111 1124455553 689998843
No 484
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=27.35 E-value=54 Score=34.92 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=11.5
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCE
Q 008626 19 RVLLLDQDSSAAAELKFKLEAMDYI 43 (559)
Q Consensus 19 rVLIVDDD~~~~~~L~~~L~~~gy~ 43 (559)
+|+|||=|.-+...+.+..+..||.
T Consensus 177 ~iaVvDIDERli~fi~k~aee~g~~ 201 (354)
T COG1568 177 RIAVVDIDERLIKFIEKVAEELGYN 201 (354)
T ss_pred eEEEEechHHHHHHHHHHHHHhCcc
Confidence 4444444444444444444444443
No 485
>PRK06101 short chain dehydrogenase; Provisional
Probab=27.26 E-value=2.6e+02 Score=27.18 Aligned_cols=68 Identities=16% Similarity=0.198 Sum_probs=44.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC
Q 008626 18 LRVLLLDQDSSAAAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK 87 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir 87 (559)
-.|||.....-+-..+...|...|++|+.+....+.++.+.........+-+|+.-.+ +--++++.+.
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~--~~~~~~~~~~ 69 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQSANIFTLAFDVTDHP--GTKAALSQLP 69 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCCCeEEEeeCCCHH--HHHHHHHhcc
Confidence 3688888888888889988988899988665545555555442234566777775433 2234555543
No 486
>PRK07206 hypothetical protein; Provisional
Probab=27.21 E-value=5.7e+02 Score=27.41 Aligned_cols=27 Identities=19% Similarity=0.059 Sum_probs=17.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCEEE
Q 008626 18 LRVLLLDQDSSAAAELKFKLEAMDYIVS 45 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~gy~V~ 45 (559)
.+||||+-... ...+...+++.||.++
T Consensus 3 k~~liv~~~~~-~~~~~~a~~~~G~~~v 29 (416)
T PRK07206 3 KKVVIVDPFSS-GKFLAPAFKKRGIEPI 29 (416)
T ss_pred CeEEEEcCCch-HHHHHHHHHHcCCeEE
Confidence 47788887533 4456666777788655
No 487
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=27.18 E-value=2.8e+02 Score=27.02 Aligned_cols=61 Identities=23% Similarity=0.303 Sum_probs=35.0
Q ss_pred HHHHHHHhhCCCEEEEECC---H---HHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC--CCcEEEEe
Q 008626 31 AELKFKLEAMDYIVSTFYN---E---NEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITS 95 (559)
Q Consensus 31 ~~L~~~L~~~gy~V~ta~~---~---~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir--diPVImLS 95 (559)
..++..+++.||++..+.+ . .+++..+.. ..+|.||+.-..++ ...+.++.+. .+|||++-
T Consensus 19 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~--~~~dgiii~~~~~~--~~~~~l~~~~~~~ipvV~~~ 87 (277)
T cd06319 19 RGVKSKAKALGYDAVELSAENSAKKELENLRTAID--KGVSGIIISPTNSS--AAVTLLKLAAQAKIPVVIAD 87 (277)
T ss_pred HHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHh--cCCCEEEEcCCchh--hhHHHHHHHHHCCCCEEEEe
Confidence 4455566678999876543 2 234444445 57998877432221 1223455443 78998874
No 488
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=27.17 E-value=2.9e+02 Score=27.63 Aligned_cols=63 Identities=11% Similarity=0.158 Sum_probs=37.9
Q ss_pred HHHHHHHHhhCCCEEEEECC---HH---HHHHHhhcCCCCeeEEEEecCCCCCCC-HHHHHHHcC--CCcEEEEecC
Q 008626 30 AAELKFKLEAMDYIVSTFYN---EN---EALSAFSDKPENFHVAIVEVTTSNTDG-SFKFLETAK--DLPTIITSNI 97 (559)
Q Consensus 30 ~~~L~~~L~~~gy~V~ta~~---~~---eAL~~Lre~~~~pDLVIvDv~MPd~md-G~eLLe~Ir--diPVImLSa~ 97 (559)
...++..++..||.+..+.. .+ ++++.+.. ..+|-||+--. + .+ ..+.++.+. .+|||++-..
T Consensus 18 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~--~~vdgiii~~~--~-~~~~~~~l~~l~~~~ipvV~~~~~ 89 (288)
T cd01538 18 RPNFEAALKELGAEVIVQNANGDPAKQISQIENMIA--KGVDVLVIAPV--D-GEALASAVEKAADAGIPVIAYDRL 89 (288)
T ss_pred HHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHH--cCCCEEEEecC--C-hhhHHHHHHHHHHCCCCEEEECCC
Confidence 34566666778999885543 22 44555555 57998887432 2 22 234555553 7999988543
No 489
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=27.12 E-value=3.5e+02 Score=32.60 Aligned_cols=98 Identities=9% Similarity=0.051 Sum_probs=55.8
Q ss_pred cEEEEEeCCHHH---HHHHHHHHhhCCCEEEEECCHHHHHHHhhcCCCCeeEEEEecC--CCCCCCHHHHHHHcC-----
Q 008626 18 LRVLLLDQDSSA---AAELKFKLEAMDYIVSTFYNENEALSAFSDKPENFHVAIVEVT--TSNTDGSFKFLETAK----- 87 (559)
Q Consensus 18 lrVLIVDDD~~~---~~~L~~~L~~~gy~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~--MPd~mdG~eLLe~Ir----- 87 (559)
.+|.+|+-|..- .+.|..+-+..|..+..+.+..++.+.+... ..+|+||+|.- ++....-.+.+..+.
T Consensus 216 kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~-~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p 294 (767)
T PRK14723 216 DQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAAL-GDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRP 294 (767)
T ss_pred CeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHh-cCCCEEEEeCCCCCccCHHHHHHHHHHhccCCC
Confidence 478888877543 2445555556677777677888877777653 35799999983 111011233333332
Q ss_pred CCcEEEEecCCCHHH---HHHHHHc----CCCEEEe
Q 008626 88 DLPTIITSNIHCLST---MMKCIAL----GAVEFLR 116 (559)
Q Consensus 88 diPVImLSa~~d~e~---v~kAi~~----GA~DYLv 116 (559)
.-.++++++....+. +.+.+.. +.+++|.
T Consensus 295 ~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glIl 330 (767)
T PRK14723 295 VRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCII 330 (767)
T ss_pred CeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEEEE
Confidence 345667766654443 3344543 4555543
No 490
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=26.97 E-value=3.9e+02 Score=29.54 Aligned_cols=73 Identities=14% Similarity=0.111 Sum_probs=48.3
Q ss_pred CHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CCc---EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHH
Q 008626 49 NENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLP---TIITSNIHCLSTMMKCIALGAVEFLRKPLSEDKL 124 (559)
Q Consensus 49 ~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-diP---VImLSa~~d~e~v~kAi~~GA~DYLvKPis~eeL 124 (559)
+.++..++++. .|++++=- .-+ .-|+-+++.+. ..| +|++|........ |..++++.|.+.++|
T Consensus 350 ~~~el~~~y~~----aDv~v~pS-~~E-g~~lv~lEAma~g~p~~g~vV~S~~~G~~~~------~~~g~lv~p~d~~~l 417 (460)
T cd03788 350 PREELAALYRA----ADVALVTP-LRD-GMNLVAKEYVACQDDDPGVLILSEFAGAAEE------LSGALLVNPYDIDEV 417 (460)
T ss_pred CHHHHHHHHHh----ccEEEeCc-ccc-ccCcccceeEEEecCCCceEEEeccccchhh------cCCCEEECCCCHHHH
Confidence 56777777766 58887733 233 33555566664 677 5566654332211 567899999999999
Q ss_pred HHHHHHHHH
Q 008626 125 RNLWQHVVH 133 (559)
Q Consensus 125 ~~iIq~vlr 133 (559)
.++|..++.
T Consensus 418 a~ai~~~l~ 426 (460)
T cd03788 418 ADAIHRALT 426 (460)
T ss_pred HHHHHHHHc
Confidence 999888774
No 491
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=26.94 E-value=6.4e+02 Score=28.22 Aligned_cols=55 Identities=22% Similarity=0.181 Sum_probs=30.4
Q ss_pred CcEEEEEeCCHHH---HHHHHHHHhhCCCEEEEE---CCHHHHH-HHhhcCCCCeeEEEEecC
Q 008626 17 GLRVLLLDQDSSA---AAELKFKLEAMDYIVSTF---YNENEAL-SAFSDKPENFHVAIVEVT 72 (559)
Q Consensus 17 glrVLIVDDD~~~---~~~L~~~L~~~gy~V~ta---~~~~eAL-~~Lre~~~~pDLVIvDv~ 72 (559)
+.+|++|+.|... .+.|..+....+..+... .+..+.+ +.+... ...|+||+|.-
T Consensus 123 g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~-~~~DvVIIDTA 184 (437)
T PRK00771 123 GLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF-KKADVIIVDTA 184 (437)
T ss_pred CCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh-hcCCEEEEECC
Confidence 5789999988532 233445555566665533 2322222 222221 22599999985
No 492
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=26.81 E-value=2.4e+02 Score=27.21 Aligned_cols=62 Identities=18% Similarity=0.203 Sum_probs=37.3
Q ss_pred HHHHHHHHHhhCCCEEEEEC---CHH---HHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC--CCcEEEEec
Q 008626 29 AAAELKFKLEAMDYIVSTFY---NEN---EALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (559)
Q Consensus 29 ~~~~L~~~L~~~gy~V~ta~---~~~---eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir--diPVImLSa 96 (559)
+...++..++..||.+.... +.+ +.++.+.. ..+|.+|+...... ..+++.+. .+|||++-.
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~--~~~dgii~~~~~~~----~~~~~~~~~~~ipvv~~~~ 86 (259)
T cd01542 17 TVKGILAALYENGYQMLLMNTNFSIEKEIEALELLAR--QKVDGIILLATTIT----DEHREAIKKLNVPVVVVGQ 86 (259)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHh--cCCCEEEEeCCCCC----HHHHHHHhcCCCCEEEEec
Confidence 45566677778899987543 222 33444555 67998888533222 23444443 689998853
No 493
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=26.60 E-value=2.9e+02 Score=27.37 Aligned_cols=62 Identities=13% Similarity=0.051 Sum_probs=40.0
Q ss_pred HHHHHHHHHhhCCCEEEEECC--HHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC--CCcEEEEec
Q 008626 29 AAAELKFKLEAMDYIVSTFYN--ENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK--DLPTIITSN 96 (559)
Q Consensus 29 ~~~~L~~~L~~~gy~V~ta~~--~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir--diPVImLSa 96 (559)
+...+.+.++..||.+..+.. ..++++.+.. ..+|-||+-..... ...++.++ .+|||++-.
T Consensus 22 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~--~~~dgiii~~~~~~----~~~~~~~~~~~ipvV~~~~ 87 (283)
T cd06279 22 FLAGVAEVLDAAGVNLLLLPASSEDSDSALVVS--ALVDGFIVYGVPRD----DPLVAALLRRGLPVVVVDQ 87 (283)
T ss_pred HHHHHHHHHHHCCCEEEEecCccHHHHHHHHHh--cCCCEEEEeCCCCC----hHHHHHHHHcCCCEEEEec
Confidence 456677888888999886554 3466776766 67897777432212 13444443 789998854
No 494
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=26.54 E-value=3.3e+02 Score=28.63 Aligned_cols=91 Identities=9% Similarity=-0.003 Sum_probs=55.2
Q ss_pred EEEEeCCHHHHHHHHHHHh----hC-CC-EEEEECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC-CCcEE
Q 008626 20 VLLLDQDSSAAAELKFKLE----AM-DY-IVSTFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK-DLPTI 92 (559)
Q Consensus 20 VLIVDDD~~~~~~L~~~L~----~~-gy-~V~ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir-diPVI 92 (559)
|||-|.+-.....+...+. .. +. .-+.+.+.+++.+.+.. .+|+|.+|-.-++ +--++++.++ ++|++
T Consensus 163 ilikdnHi~~~g~v~~av~~~r~~~~~~~I~VEv~tleea~eA~~~---gaD~I~LD~~~~e--~l~~~v~~~~~~i~le 237 (277)
T PRK05742 163 FLIKENHIAACGGIAQAVAAAHRIAPGKPVEVEVESLDELRQALAA---GADIVMLDELSLD--DMREAVRLTAGRAKLE 237 (277)
T ss_pred EEecHHHHHHhCCHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHc---CCCEEEECCCCHH--HHHHHHHHhCCCCcEE
Confidence 5655555444433333332 12 22 33478999999888865 5899999843222 2222333343 56654
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEe
Q 008626 93 ITSNIHCLSTMMKCIALGAVEFLR 116 (559)
Q Consensus 93 mLSa~~d~e~v~kAi~~GA~DYLv 116 (559)
.++.-+.+.+.+....|++.+-+
T Consensus 238 -AsGGIt~~ni~~~a~tGvD~Isv 260 (277)
T PRK05742 238 -ASGGINESTLRVIAETGVDYISI 260 (277)
T ss_pred -EECCCCHHHHHHHHHcCCCEEEE
Confidence 55667888899999999987654
No 495
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=26.47 E-value=4e+02 Score=27.93 Aligned_cols=78 Identities=12% Similarity=0.038 Sum_probs=48.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhCCCE-EE-EECCHHHHHHHhhcCCCCeeEEEEecCCCCCCCHHHHHHHcC---CCcE
Q 008626 17 GLRVLLLDQDSSAAAELKFKLEAMDYI-VS-TFYNENEALSAFSDKPENFHVAIVEVTTSNTDGSFKFLETAK---DLPT 91 (559)
Q Consensus 17 glrVLIVDDD~~~~~~L~~~L~~~gy~-V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~Ir---diPV 91 (559)
+.+|+-||-++...+..+.-++..+.. +. .+.+..+.+... . ..||+||+|- |...-+-++++.+. --.|
T Consensus 195 ~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~-~--~~~D~Vv~dP--Pr~G~~~~~~~~l~~~~~~~i 269 (315)
T PRK03522 195 GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQ-G--EVPDLVLVNP--PRRGIGKELCDYLSQMAPRFI 269 (315)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhc-C--CCCeEEEECC--CCCCccHHHHHHHHHcCCCeE
Confidence 358999999999998888888776653 33 556666654321 2 3699999993 33011234555543 2345
Q ss_pred EEEecCCC
Q 008626 92 IITSNIHC 99 (559)
Q Consensus 92 ImLSa~~d 99 (559)
|.+|....
T Consensus 270 vyvsc~p~ 277 (315)
T PRK03522 270 LYSSCNAQ 277 (315)
T ss_pred EEEECCcc
Confidence 55665443
No 496
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=26.42 E-value=1.6e+02 Score=31.00 Aligned_cols=55 Identities=22% Similarity=0.208 Sum_probs=38.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCC--C---EEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCC
Q 008626 18 LRVLLLDQDSSAAAELKFKLEAMD--Y---IVS-TFYNENEALSAFSDKPENFHVAIVEVTTSN 75 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~g--y---~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd 75 (559)
-+|.+||=|+.+.+.-++.|.... . +|. ...|+.+. +++....||+||+|..-|.
T Consensus 101 e~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~---v~~~~~~fDvIi~D~tdp~ 161 (282)
T COG0421 101 ERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEF---LRDCEEKFDVIIVDSTDPV 161 (282)
T ss_pred ceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHH---HHhCCCcCCEEEEcCCCCC
Confidence 478889999999999999987542 2 233 45555554 4443237999999998884
No 497
>PRK10481 hypothetical protein; Provisional
Probab=26.39 E-value=3.2e+02 Score=27.88 Aligned_cols=76 Identities=16% Similarity=0.190 Sum_probs=46.1
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhCCCEEEEEC------CHHHHH---HHhhcCCCCeeEEEEecCCCCCCCHHHHHHH
Q 008626 15 PKGLRVLLLDQDSSAAAELKFKLEAMDYIVSTFY------NENEAL---SAFSDKPENFHVAIVEVTTSNTDGSFKFLET 85 (559)
Q Consensus 15 p~glrVLIVDDD~~~~~~L~~~L~~~gy~V~ta~------~~~eAL---~~Lre~~~~pDLVIvDv~MPd~mdG~eLLe~ 85 (559)
..+-||-|+--.+.......+.+...||.+.... +..... +.|.. ...|+|++|..-=. +...+.++.
T Consensus 127 ~~g~riGVitP~~~qi~~~~~kw~~~G~~v~~~~aspy~~~~~~l~~aa~~L~~--~gaD~Ivl~C~G~~-~~~~~~le~ 203 (224)
T PRK10481 127 VGGHQVGVIVPVEEQLAQQAQKWQVLQKPPVFALASPYHGSEEELIDAGKELLD--QGADVIVLDCLGYH-QRHRDLLQK 203 (224)
T ss_pred cCCCeEEEEEeCHHHHHHHHHHHHhcCCceeEeecCCCCCCHHHHHHHHHHhhc--CCCCEEEEeCCCcC-HHHHHHHHH
Confidence 4456788888777777666666666698876322 222333 33334 57899999884222 223445555
Q ss_pred cCCCcEEE
Q 008626 86 AKDLPTII 93 (559)
Q Consensus 86 IrdiPVIm 93 (559)
.-++|||.
T Consensus 204 ~lg~PVI~ 211 (224)
T PRK10481 204 ALDVPVLL 211 (224)
T ss_pred HHCcCEEc
Confidence 55888873
No 498
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=26.38 E-value=5.3e+02 Score=26.04 Aligned_cols=67 Identities=13% Similarity=0.124 Sum_probs=41.3
Q ss_pred eeEEEEecCCCCC-CCHH---------------HHHHHcC---CCcEEEEe-----cCCCHHHHHHHHHcCCCEEEeC--
Q 008626 64 FHVAIVEVTTSNT-DGSF---------------KFLETAK---DLPTIITS-----NIHCLSTMMKCIALGAVEFLRK-- 117 (559)
Q Consensus 64 pDLVIvDv~MPd~-mdG~---------------eLLe~Ir---diPVImLS-----a~~d~e~v~kAi~~GA~DYLvK-- 117 (559)
.|++=+++-.++. .||- ++++.++ ++|+++|+ ..+-...+..+.++||+.+++.
T Consensus 31 ad~iElgip~sdp~adG~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dl 110 (244)
T PRK13125 31 VDILELGIPPKYPKYDGPVIRKSHRKVKGLDIWPLLEEVRKDVSVPIILMTYLEDYVDSLDNFLNMARDVGADGVLFPDL 110 (244)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHcCcHHHHHHHhccCCCCEEEEEecchhhhCHHHHHHHHHHcCCCEEEECCC
Confidence 6766666655552 2442 3566665 68987764 2334445788999999999996
Q ss_pred CCC-HHHHHHHHHH
Q 008626 118 PLS-EDKLRNLWQH 130 (559)
Q Consensus 118 Pis-~eeL~~iIq~ 130 (559)
|++ .+++...++.
T Consensus 111 p~e~~~~~~~~~~~ 124 (244)
T PRK13125 111 LIDYPDDLEKYVEI 124 (244)
T ss_pred CCCcHHHHHHHHHH
Confidence 343 3555444333
No 499
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=26.33 E-value=1.6e+02 Score=29.08 Aligned_cols=35 Identities=11% Similarity=0.047 Sum_probs=19.3
Q ss_pred CCeeEEEEecCCCCCCCHHHHHHHcCCCcEEEEecC
Q 008626 62 ENFHVAIVEVTTSNTDGSFKFLETAKDLPTIITSNI 97 (559)
Q Consensus 62 ~~pDLVIvDv~MPd~mdG~eLLe~IrdiPVImLSa~ 97 (559)
..|||||....... ..-++.++.+..+|++++...
T Consensus 73 l~PDLIi~~~~~~~-~~~~~~l~~~~gipvv~~~~~ 107 (262)
T cd01147 73 LKPDVVIDVGSDDP-TSIADDLQKKTGIPVVVLDGG 107 (262)
T ss_pred cCCCEEEEecCCcc-chhHHHHHHhhCCCEEEEecC
Confidence 46888887644322 112344444445788777644
No 500
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=26.26 E-value=1.8e+02 Score=29.86 Aligned_cols=55 Identities=22% Similarity=0.169 Sum_probs=34.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhCC-----CEEE-EECCHHHHHHHhhcCCCCeeEEEEecCCCC
Q 008626 18 LRVLLLDQDSSAAAELKFKLEAMD-----YIVS-TFYNENEALSAFSDKPENFHVAIVEVTTSN 75 (559)
Q Consensus 18 lrVLIVDDD~~~~~~L~~~L~~~g-----y~V~-ta~~~~eAL~~Lre~~~~pDLVIvDv~MPd 75 (559)
.+|.+||-|+.+.+..++.+...+ -++. ...++.+.++.. ...||+||+|..-+.
T Consensus 97 ~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~---~~~yDvIi~D~~~~~ 157 (270)
T TIGR00417 97 EKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT---ENTFDVIIVDSTDPV 157 (270)
T ss_pred ceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC---CCCccEEEEeCCCCC
Confidence 468888888888887777764421 1222 335555555433 257999999876443
Done!